Query 010115
Match_columns 518
No_of_seqs 427 out of 3440
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 20:13:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010115.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010115hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xn4_A Kelch-like protein 2; s 100.0 2.4E-45 8.3E-50 363.7 37.3 292 33-360 7-299 (302)
2 1zgk_A Kelch-like ECH-associat 100.0 3.1E-45 1.1E-49 364.3 35.0 294 28-359 11-308 (308)
3 1zgk_A Kelch-like ECH-associat 100.0 2.8E-45 9.6E-50 364.6 33.1 281 83-394 9-293 (308)
4 3ii7_A Kelch-like protein 7; p 100.0 1.9E-44 6.5E-49 358.0 35.9 282 41-361 11-295 (306)
5 2vpj_A Kelch-like protein 12; 100.0 5.1E-44 1.7E-48 353.9 35.4 286 39-360 12-300 (301)
6 2xn4_A Kelch-like protein 2; s 100.0 7.4E-43 2.5E-47 345.8 36.8 269 94-394 11-282 (302)
7 3ii7_A Kelch-like protein 7; p 100.0 7.4E-43 2.5E-47 346.5 35.8 263 98-394 11-278 (306)
8 2woz_A Kelch repeat and BTB do 100.0 8.3E-44 2.8E-48 355.5 28.1 293 33-372 7-315 (318)
9 4asc_A Kelch repeat and BTB do 100.0 6.4E-44 2.2E-48 355.9 26.1 286 41-373 4-306 (315)
10 2vpj_A Kelch-like protein 12; 100.0 1.6E-42 5.4E-47 343.2 33.6 268 96-394 12-284 (301)
11 4asc_A Kelch repeat and BTB do 100.0 3.7E-42 1.3E-46 343.1 27.2 261 98-394 4-283 (315)
12 2uvk_A YJHT; unknown function, 100.0 7.9E-42 2.7E-46 346.6 28.9 281 84-394 5-348 (357)
13 2woz_A Kelch repeat and BTB do 100.0 1.4E-40 4.6E-45 332.2 30.5 270 87-394 7-293 (318)
14 2uvk_A YJHT; unknown function, 100.0 7.9E-40 2.7E-44 331.9 29.4 276 36-341 14-349 (357)
15 2zwa_A Leucine carboxyl methyl 100.0 4.5E-38 1.5E-42 345.5 28.8 283 84-388 384-694 (695)
16 2zwa_A Leucine carboxyl methyl 100.0 4.9E-35 1.7E-39 321.3 26.4 268 40-334 396-694 (695)
17 1k3i_A Galactose oxidase precu 100.0 1.2E-34 4.2E-39 317.3 19.5 339 16-387 167-548 (656)
18 1k3i_A Galactose oxidase precu 100.0 1.2E-33 4E-38 309.5 21.9 314 70-413 172-531 (656)
19 3dsm_A Uncharacterized protein 98.3 0.0011 3.7E-08 65.2 31.0 250 87-387 42-301 (328)
20 3mbr_X Glutamine cyclotransfer 98.0 0.0029 1E-07 59.0 25.1 163 148-340 22-185 (243)
21 3dsm_A Uncharacterized protein 98.0 0.017 5.7E-07 56.5 31.3 233 113-391 16-256 (328)
22 3nol_A Glutamine cyclotransfer 97.8 0.0086 2.9E-07 56.4 23.4 163 148-341 44-208 (262)
23 3q7m_A Lipoprotein YFGL, BAMB; 97.7 0.054 1.8E-06 53.6 30.6 233 93-390 48-298 (376)
24 3mbr_X Glutamine cyclotransfer 97.6 0.02 6.9E-07 53.3 23.6 162 89-289 21-184 (243)
25 1l0q_A Surface layer protein; 97.6 0.0098 3.4E-07 59.0 22.5 227 99-390 2-235 (391)
26 2ovr_B FBW7, F-BOX/WD repeat p 97.6 0.03 1E-06 56.8 26.3 198 154-389 246-443 (445)
27 1l0q_A Surface layer protein; 97.4 0.023 8E-07 56.2 22.8 227 99-390 44-277 (391)
28 1k8k_C P40, ARP2/3 complex 41 97.3 0.067 2.3E-06 52.2 24.5 198 98-341 63-283 (372)
29 3q7m_A Lipoprotein YFGL, BAMB; 97.3 0.15 5.1E-06 50.3 30.2 227 90-390 95-339 (376)
30 4ery_A WD repeat-containing pr 97.3 0.12 4.2E-06 49.2 25.7 233 98-390 34-270 (312)
31 3nol_A Glutamine cyclotransfer 97.3 0.064 2.2E-06 50.4 22.3 189 90-317 44-244 (262)
32 2iwa_A Glutamine cyclotransfer 97.3 0.12 4.3E-06 48.7 27.1 205 150-389 24-238 (266)
33 3bws_A Protein LP49; two-domai 97.3 0.04 1.4E-06 55.3 22.8 240 98-390 133-392 (433)
34 3jrp_A Fusion protein of prote 97.2 0.059 2E-06 52.6 22.4 237 98-389 22-288 (379)
35 3bws_A Protein LP49; two-domai 97.2 0.024 8.4E-07 56.9 20.0 227 115-390 102-336 (433)
36 2iwa_A Glutamine cyclotransfer 97.1 0.15 5.2E-06 48.1 23.5 202 91-334 23-237 (266)
37 1k8k_C P40, ARP2/3 complex 41 97.1 0.11 3.8E-06 50.6 23.6 241 98-393 19-281 (372)
38 1p22_A F-BOX/WD-repeat protein 97.1 0.066 2.2E-06 54.1 22.5 229 95-390 139-367 (435)
39 1gxr_A ESG1, transducin-like e 97.1 0.09 3.1E-06 50.2 22.4 187 156-390 108-298 (337)
40 1gxr_A ESG1, transducin-like e 97.1 0.063 2.2E-06 51.4 21.2 225 98-386 108-335 (337)
41 3nok_A Glutaminyl cyclase; bet 97.1 0.048 1.6E-06 51.4 19.2 158 90-289 56-215 (268)
42 3ow8_A WD repeat-containing pr 97.0 0.23 7.8E-06 48.0 24.7 189 156-390 91-281 (321)
43 2ovr_B FBW7, F-BOX/WD repeat p 97.0 0.21 7.2E-06 50.4 25.4 226 95-390 125-350 (445)
44 4ery_A WD repeat-containing pr 97.0 0.23 8E-06 47.2 27.0 193 98-338 76-272 (312)
45 3nok_A Glutaminyl cyclase; bet 96.9 0.034 1.2E-06 52.4 16.1 159 148-339 56-215 (268)
46 3vgz_A Uncharacterized protein 96.8 0.41 1.4E-05 46.0 29.8 242 98-391 52-306 (353)
47 3v7d_B Cell division control p 96.8 0.55 1.9E-05 47.4 26.6 147 206-391 278-424 (464)
48 3e5z_A Putative gluconolactona 96.8 0.38 1.3E-05 45.5 23.4 255 72-391 16-289 (296)
49 2z2n_A Virginiamycin B lyase; 96.8 0.36 1.2E-05 45.2 25.8 227 98-390 67-297 (299)
50 2hqs_A Protein TOLB; TOLB, PAL 96.7 0.19 6.4E-06 50.7 21.7 225 114-390 159-389 (415)
51 4aez_A CDC20, WD repeat-contai 96.7 0.24 8.3E-06 49.2 22.2 233 98-390 145-382 (401)
52 4aez_A CDC20, WD repeat-contai 96.6 0.57 2E-05 46.4 24.6 220 114-390 113-338 (401)
53 1ri6_A Putative isomerase YBHE 96.6 0.25 8.4E-06 47.3 21.0 261 99-412 50-333 (343)
54 2xbg_A YCF48-like protein; pho 96.6 0.57 1.9E-05 45.4 25.7 251 72-386 64-320 (327)
55 3ow8_A WD repeat-containing pr 96.6 0.57 1.9E-05 45.1 25.8 225 99-386 92-319 (321)
56 3v9f_A Two-component system se 96.6 0.077 2.6E-06 58.4 19.0 224 115-389 428-657 (781)
57 1r5m_A SIR4-interacting protei 96.6 0.39 1.3E-05 47.3 22.5 229 98-390 119-363 (425)
58 1rwi_B Serine/threonine-protei 96.5 0.36 1.2E-05 44.6 20.6 229 98-390 34-266 (270)
59 2xbg_A YCF48-like protein; pho 96.5 0.69 2.4E-05 44.8 24.5 242 72-373 23-269 (327)
60 3vgz_A Uncharacterized protein 96.4 0.71 2.4E-05 44.3 29.1 201 99-340 101-309 (353)
61 3u4y_A Uncharacterized protein 96.4 0.44 1.5E-05 45.5 21.2 236 98-391 9-255 (331)
62 3jro_A Fusion protein of prote 96.4 0.11 3.8E-06 56.9 18.5 235 99-388 21-285 (753)
63 1p22_A F-BOX/WD-repeat protein 96.4 0.27 9.2E-06 49.5 20.2 189 152-390 138-327 (435)
64 2ojh_A Uncharacterized protein 96.3 0.12 4.1E-06 48.1 16.4 228 113-391 21-261 (297)
65 1got_B GT-beta; complex (GTP-b 96.3 0.82 2.8E-05 44.2 23.0 147 156-336 154-303 (340)
66 3jrp_A Fusion protein of prote 96.3 0.35 1.2E-05 46.9 20.3 195 156-390 22-242 (379)
67 1kb0_A Quinohemoprotein alcoho 96.3 0.58 2E-05 50.5 23.6 132 92-240 71-208 (677)
68 1sq9_A Antiviral protein SKI8; 96.3 0.91 3.1E-05 44.4 23.6 204 158-390 82-324 (397)
69 1jmx_B Amine dehydrogenase; ox 96.3 0.59 2E-05 44.7 21.4 160 98-289 10-180 (349)
70 1r5m_A SIR4-interacting protei 96.3 0.098 3.4E-06 51.8 16.1 145 157-336 217-363 (425)
71 3mkq_A Coatomer beta'-subunit; 96.3 0.44 1.5E-05 52.0 22.7 231 98-390 24-261 (814)
72 3v7d_B Cell division control p 96.3 1.1 3.9E-05 45.0 27.5 234 95-390 128-383 (464)
73 3mkq_A Coatomer beta'-subunit; 96.2 0.65 2.2E-05 50.7 23.8 191 98-339 66-264 (814)
74 3zwl_B Eukaryotic translation 96.2 0.86 2.9E-05 43.7 22.4 200 98-340 43-255 (369)
75 3g4e_A Regucalcin; six bladed 96.2 0.4 1.4E-05 45.6 19.3 237 89-374 13-263 (297)
76 3fm0_A Protein CIAO1; WDR39,SG 96.2 1 3.5E-05 43.6 22.9 190 98-331 27-222 (345)
77 4gqb_B Methylosome protein 50; 96.1 0.85 2.9E-05 44.5 21.7 189 156-389 138-332 (344)
78 2z2n_A Virginiamycin B lyase; 96.1 0.93 3.2E-05 42.2 26.6 226 98-387 25-254 (299)
79 4a2l_A BT_4663, two-component 96.0 0.43 1.5E-05 52.4 21.3 225 115-390 428-661 (795)
80 2z3z_A Dipeptidyl aminopeptida 96.0 1.1 3.6E-05 48.2 24.1 158 172-341 234-398 (706)
81 2qc5_A Streptogramin B lactona 96.0 0.97 3.3E-05 42.1 24.1 226 98-387 30-259 (300)
82 1got_B GT-beta; complex (GTP-b 96.0 1.2 4.1E-05 43.0 26.4 234 98-390 66-303 (340)
83 1q7f_A NHL, brain tumor CG1071 96.0 1 3.6E-05 41.9 27.3 237 98-388 40-280 (286)
84 3dwl_C Actin-related protein 2 95.9 0.2 6.8E-06 49.0 16.2 151 98-284 22-177 (377)
85 3vl1_A 26S proteasome regulato 95.9 1.5 5.1E-05 43.3 27.3 105 207-334 258-365 (420)
86 3hfq_A Uncharacterized protein 95.9 0.91 3.1E-05 43.7 20.8 235 115-388 19-271 (347)
87 1sq9_A Antiviral protein SKI8; 95.9 1.1 3.8E-05 43.7 21.8 116 207-339 197-327 (397)
88 1kb0_A Quinohemoprotein alcoho 95.9 1.8 6.2E-05 46.6 24.7 125 152-291 73-208 (677)
89 2ojh_A Uncharacterized protein 95.8 0.44 1.5E-05 44.0 17.6 202 98-341 52-265 (297)
90 2ad6_A Methanol dehydrogenase 95.8 1.8 6.1E-05 45.6 23.6 128 92-239 56-193 (571)
91 3u4y_A Uncharacterized protein 95.7 0.74 2.5E-05 43.9 19.1 237 99-390 52-306 (331)
92 2hqs_A Protein TOLB; TOLB, PAL 95.7 0.3 1E-05 49.1 16.8 200 98-341 189-394 (415)
93 3k26_A Polycomb protein EED; W 95.7 1.3 4.3E-05 42.5 20.8 105 99-234 85-193 (366)
94 4gga_A P55CDC, cell division c 95.7 1.8 6.3E-05 43.0 22.5 224 114-390 125-355 (420)
95 4g56_B MGC81050 protein; prote 95.6 0.85 2.9E-05 44.6 19.5 188 156-389 150-344 (357)
96 3azo_A Aminopeptidase; POP fam 95.6 2.5 8.7E-05 44.8 24.8 152 172-342 216-377 (662)
97 1vyh_C Platelet-activating fac 95.6 1.9 6.4E-05 42.9 22.4 187 98-336 161-371 (410)
98 4aow_A Guanine nucleotide-bind 95.6 1.1 3.7E-05 42.6 19.8 236 98-390 97-339 (340)
99 2dg1_A DRP35, lactonase; beta 95.5 1.7 6E-05 41.4 22.5 208 98-341 55-270 (333)
100 1ri6_A Putative isomerase YBHE 95.5 1.3 4.3E-05 42.1 19.9 197 156-387 49-261 (343)
101 2hes_X YDR267CP; beta-propelle 95.5 1.9 6.4E-05 41.4 21.8 199 156-388 118-328 (330)
102 3scy_A Hypothetical bacterial 95.4 2 6.9E-05 41.5 22.5 246 101-387 15-290 (361)
103 4e54_B DNA damage-binding prot 95.4 0.32 1.1E-05 49.0 15.7 192 98-336 131-329 (435)
104 1pjx_A Dfpase, DIISOPROPYLFLUO 95.4 1.8 6.3E-05 40.6 23.7 249 98-390 28-301 (314)
105 2xdw_A Prolyl endopeptidase; a 95.4 2.7 9.1E-05 45.3 23.9 212 98-340 135-375 (710)
106 3vl1_A 26S proteasome regulato 95.4 2.4 8.1E-05 41.7 25.2 231 98-389 108-366 (420)
107 3dwl_C Actin-related protein 2 95.3 0.73 2.5E-05 44.8 17.9 199 98-341 66-288 (377)
108 2ynn_A Coatomer subunit beta'; 95.3 2 6.7E-05 40.6 23.1 233 98-390 24-261 (304)
109 1yiq_A Quinohemoprotein alcoho 95.3 4 0.00014 44.0 26.0 131 92-239 64-200 (689)
110 3scy_A Hypothetical bacterial 95.3 2.3 7.8E-05 41.1 27.2 80 254-342 216-301 (361)
111 3pe7_A Oligogalacturonate lyas 95.2 2.4 8.2E-05 41.2 21.7 208 172-391 167-387 (388)
112 4gqb_B Methylosome protein 50; 95.2 0.71 2.4E-05 45.1 17.2 195 156-390 92-291 (344)
113 1qhu_A Protein (hemopexin); be 95.2 3.1 0.00011 42.4 22.1 189 156-389 158-386 (460)
114 3jro_A Fusion protein of prote 95.2 0.36 1.2E-05 52.7 16.5 195 156-389 20-239 (753)
115 2qc5_A Streptogramin B lactona 95.2 1.9 6.6E-05 40.0 24.8 190 98-340 72-265 (300)
116 4a11_B DNA excision repair pro 95.2 0.8 2.7E-05 44.8 17.5 153 156-337 111-279 (408)
117 1nir_A Nitrite reductase; hemo 95.2 0.65 2.2E-05 48.6 17.6 193 174-390 249-460 (543)
118 1yfq_A Cell cycle arrest prote 95.1 2.3 7.8E-05 40.4 21.1 185 98-334 22-225 (342)
119 3odt_A Protein DOA1; ubiquitin 95.1 2.1 7.3E-05 39.8 23.2 147 207-393 154-301 (313)
120 2z3z_A Dipeptidyl aminopeptida 95.1 2.4 8.3E-05 45.4 22.4 154 223-390 234-393 (706)
121 2ghs_A AGR_C_1268P; regucalcin 95.1 2.6 8.7E-05 40.5 21.7 195 99-340 61-266 (326)
122 2ecf_A Dipeptidyl peptidase IV 95.0 1.2 4E-05 48.2 19.8 110 225-341 264-375 (741)
123 3v9f_A Two-component system se 95.0 1.5 5.1E-05 48.0 20.7 192 98-334 460-656 (781)
124 2ecf_A Dipeptidyl peptidase IV 95.0 0.64 2.2E-05 50.3 17.5 106 276-389 264-370 (741)
125 3pe7_A Oligogalacturonate lyas 95.0 2.3 7.9E-05 41.4 20.2 199 114-342 60-281 (388)
126 3ei3_B DNA damage-binding prot 94.9 2.2 7.5E-05 41.5 19.9 189 158-390 87-284 (383)
127 3mmy_A MRNA export factor; mRN 94.9 2.8 9.5E-05 40.0 20.3 105 99-235 54-162 (368)
128 4a11_B DNA excision repair pro 94.9 1.4 4.7E-05 43.0 18.4 237 98-390 111-367 (408)
129 3dr2_A Exported gluconolactona 94.8 2.8 9.5E-05 39.7 21.0 223 99-371 57-295 (305)
130 3zwl_B Eukaryotic translation 94.8 1.8 6.1E-05 41.4 18.7 197 156-390 43-251 (369)
131 1yiq_A Quinohemoprotein alcoho 94.8 5.4 0.00018 42.9 26.6 123 152-290 66-200 (689)
132 3fm0_A Protein CIAO1; WDR39,SG 94.8 0.6 2.1E-05 45.3 15.2 193 156-387 27-224 (345)
133 1qks_A Cytochrome CD1 nitrite 94.7 2.2 7.5E-05 44.9 20.2 205 156-389 255-478 (567)
134 1vyh_C Platelet-activating fac 94.7 1.6 5.5E-05 43.4 18.5 148 156-339 119-270 (410)
135 1pby_B Quinohemoprotein amine 94.7 2.9 0.0001 39.4 21.1 145 114-290 11-169 (337)
136 2aq5_A Coronin-1A; WD40 repeat 94.7 2.6 8.9E-05 41.5 19.8 200 156-390 93-301 (402)
137 2pbi_B Guanine nucleotide-bind 94.6 3.5 0.00012 40.0 23.2 229 98-390 75-317 (354)
138 1pby_B Quinohemoprotein amine 94.6 3 0.0001 39.2 21.7 235 99-390 46-312 (337)
139 1rwi_B Serine/threonine-protei 94.6 1.3 4.3E-05 40.8 16.4 190 93-334 71-264 (270)
140 4a2l_A BT_4663, two-component 94.6 6.6 0.00022 42.9 28.9 196 98-342 98-299 (795)
141 2vdu_B TRNA (guanine-N(7)-)-me 94.6 4.3 0.00015 40.7 24.1 111 156-288 160-275 (450)
142 2pm9_A Protein WEB1, protein t 94.5 1.7 5.7E-05 42.7 18.1 196 157-390 126-339 (416)
143 3hfq_A Uncharacterized protein 94.5 2.2 7.5E-05 40.9 18.6 201 161-388 6-218 (347)
144 2xdw_A Prolyl endopeptidase; a 94.5 4.5 0.00015 43.5 22.8 262 96-389 81-369 (710)
145 2aq5_A Coronin-1A; WD40 repeat 94.5 1.2 4.2E-05 43.9 17.0 208 98-341 93-308 (402)
146 2ynn_A Coatomer subunit beta'; 94.4 2.6 9E-05 39.7 18.5 194 156-390 24-219 (304)
147 1w6s_A Methanol dehydrogenase 94.4 5.4 0.00018 42.2 22.3 130 92-240 56-200 (599)
148 2pm9_A Protein WEB1, protein t 94.4 2 7E-05 42.1 18.3 203 156-390 78-296 (416)
149 3c5m_A Oligogalacturonate lyas 94.3 1.9 6.4E-05 42.0 17.8 203 172-393 167-389 (396)
150 1q7f_A NHL, brain tumor CG1071 94.3 3.3 0.00011 38.4 23.1 195 156-388 40-238 (286)
151 4g56_B MGC81050 protein; prote 94.3 0.28 9.6E-06 48.1 11.4 186 98-334 150-343 (357)
152 3odt_A Protein DOA1; ubiquitin 94.2 3.5 0.00012 38.3 22.2 226 97-390 27-257 (313)
153 3bg1_A Protein SEC13 homolog; 94.2 1.7 5.9E-05 41.4 16.7 112 98-239 24-143 (316)
154 1kv9_A Type II quinohemoprotei 94.0 7.1 0.00024 41.8 22.8 130 92-239 60-195 (668)
155 2ad6_A Methanol dehydrogenase 94.0 7.1 0.00024 40.9 23.9 125 151-291 57-194 (571)
156 3i2n_A WD repeat-containing pr 93.9 1.7 5.8E-05 41.5 16.2 234 99-390 31-293 (357)
157 2pm7_B Protein transport prote 93.9 3.8 0.00013 38.4 18.4 114 208-341 170-293 (297)
158 1pgu_A Actin interacting prote 93.8 3.5 0.00012 42.8 19.6 151 210-389 175-329 (615)
159 2pm7_B Protein transport prote 93.8 4.4 0.00015 38.0 21.7 107 98-234 20-133 (297)
160 4e54_B DNA damage-binding prot 93.8 0.71 2.4E-05 46.4 13.6 193 156-389 131-328 (435)
161 3iz6_a 40S ribosomal protein R 93.8 5.4 0.00019 38.9 24.5 197 157-389 170-376 (380)
162 1w6s_A Methanol dehydrogenase 93.7 7.7 0.00026 41.0 21.9 125 151-291 57-200 (599)
163 1pjx_A Dfpase, DIISOPROPYLFLUO 93.6 2.3 7.8E-05 40.0 16.3 195 99-335 83-300 (314)
164 2hes_X YDR267CP; beta-propelle 93.6 3 0.0001 39.9 17.3 191 98-334 118-328 (330)
165 1nir_A Nitrite reductase; hemo 93.6 8 0.00027 40.2 22.5 235 98-388 148-402 (543)
166 3lrv_A PRE-mRNA-splicing facto 93.5 5.4 0.00018 38.2 20.7 105 207-336 138-246 (343)
167 3azo_A Aminopeptidase; POP fam 93.5 5.8 0.0002 41.9 21.0 199 173-390 102-327 (662)
168 3ei3_B DNA damage-binding prot 93.5 4.3 0.00015 39.4 18.7 188 100-336 87-284 (383)
169 3no2_A Uncharacterized protein 93.5 4.1 0.00014 38.1 17.7 187 157-390 5-197 (276)
170 3gre_A Serine/threonine-protei 93.5 3.7 0.00013 40.7 18.4 110 207-338 181-296 (437)
171 3iuj_A Prolyl endopeptidase; h 93.4 7 0.00024 41.9 21.6 195 114-341 155-366 (693)
172 3c5m_A Oligogalacturonate lyas 93.4 1.1 3.8E-05 43.7 14.0 200 114-341 168-391 (396)
173 3dm0_A Maltose-binding peripla 93.2 7.4 0.00025 41.6 21.4 191 98-338 441-636 (694)
174 1erj_A Transcriptional repress 93.2 6.8 0.00023 38.4 23.0 148 98-284 134-287 (393)
175 4aow_A Guanine nucleotide-bind 93.2 5.6 0.00019 37.4 21.4 188 156-390 97-288 (340)
176 3g4e_A Regucalcin; six bladed 93.1 2.5 8.7E-05 39.8 15.6 213 156-412 24-251 (297)
177 2vdu_B TRNA (guanine-N(7)-)-me 93.1 7.8 0.00027 38.7 20.4 160 157-339 210-398 (450)
178 1kv9_A Type II quinohemoprotei 93.1 11 0.00037 40.3 24.2 123 152-290 62-195 (668)
179 2bkl_A Prolyl endopeptidase; m 93.0 1.9 6.3E-05 46.5 16.1 212 98-340 131-357 (695)
180 1npe_A Nidogen, entactin; glyc 92.9 5.6 0.00019 36.6 24.4 198 92-339 39-243 (267)
181 1yr2_A Prolyl oligopeptidase; 92.9 8.1 0.00028 41.7 21.2 150 173-340 243-401 (741)
182 3f3f_A Nucleoporin SEH1; struc 92.9 6.1 0.00021 36.9 25.0 194 98-334 22-249 (351)
183 3e5z_A Putative gluconolactona 92.9 4.1 0.00014 38.0 16.7 192 156-389 39-247 (296)
184 1yr2_A Prolyl oligopeptidase; 92.6 9.5 0.00032 41.2 21.3 223 97-341 117-359 (741)
185 3sfz_A APAF-1, apoptotic pepti 92.6 0.72 2.5E-05 53.2 13.0 188 98-337 972-1161(1249)
186 1qhu_A Protein (hemopexin); be 92.6 8.8 0.0003 39.0 19.3 101 156-285 107-216 (460)
187 3dm0_A Maltose-binding peripla 92.6 12 0.00042 39.7 22.0 189 156-390 441-634 (694)
188 3sfz_A APAF-1, apoptotic pepti 92.4 17 0.00058 41.6 24.2 145 98-285 626-775 (1249)
189 2dg1_A DRP35, lactonase; beta 92.4 1.8 6.3E-05 41.2 13.7 155 156-334 55-213 (333)
190 3lrv_A PRE-mRNA-splicing facto 92.4 7.9 0.00027 36.9 20.4 192 156-390 47-246 (343)
191 1jmx_B Amine dehydrogenase; ox 92.3 0.65 2.2E-05 44.4 10.4 159 156-339 10-180 (349)
192 3ott_A Two-component system se 92.3 10 0.00035 41.0 21.1 224 115-389 393-627 (758)
193 3frx_A Guanine nucleotide-bind 92.0 8.4 0.00029 36.4 21.8 146 98-286 76-229 (319)
194 2pbi_B Guanine nucleotide-bind 92.0 9.2 0.00032 36.9 24.4 148 156-336 165-317 (354)
195 4gga_A P55CDC, cell division c 91.7 11 0.00038 37.1 25.7 233 98-389 158-396 (420)
196 2ymu_A WD-40 repeat protein; u 91.5 14 0.00047 37.9 20.3 182 156-387 355-538 (577)
197 3i2n_A WD repeat-containing pr 91.5 3.1 0.0001 39.6 14.2 194 157-390 31-245 (357)
198 3no2_A Uncharacterized protein 91.3 9.4 0.00032 35.6 23.1 188 98-340 4-203 (276)
199 3b7f_A Glycosyl hydrolase, BNR 91.2 12 0.00041 36.8 23.7 234 74-341 43-329 (394)
200 2ymu_A WD-40 repeat protein; u 91.2 10 0.00034 39.0 18.8 148 156-340 396-545 (577)
201 3f3f_A Nucleoporin SEH1; struc 90.6 11 0.00037 35.1 19.1 28 309-341 317-345 (351)
202 3fvz_A Peptidyl-glycine alpha- 90.6 12 0.00041 35.6 29.0 238 114-389 69-323 (329)
203 1itv_A MMP9; adaptive molecula 90.6 8.2 0.00028 34.2 14.8 153 150-338 10-178 (195)
204 3bg1_A Protein SEC13 homolog; 90.5 4 0.00014 38.7 13.8 195 99-342 71-302 (316)
205 1yfq_A Cell cycle arrest prote 90.2 12 0.0004 35.2 17.0 188 156-389 22-226 (342)
206 1pex_A Collagenase-3, MMP-13; 90.1 10 0.00034 34.0 15.9 153 150-339 27-197 (207)
207 3iuj_A Prolyl endopeptidase; h 90.0 23 0.00078 37.9 24.5 148 173-343 259-414 (693)
208 2xyi_A Probable histone-bindin 89.7 11 0.00037 37.5 16.9 146 210-389 196-354 (430)
209 3b7f_A Glycosyl hydrolase, BNR 89.6 15 0.0005 36.1 17.6 196 175-394 33-268 (394)
210 1flg_A Protein (quinoprotein e 89.6 22 0.00076 37.2 24.2 124 92-239 62-201 (582)
211 3iz6_a 40S ribosomal protein R 89.5 16 0.00055 35.4 22.0 150 156-334 217-375 (380)
212 1erj_A Transcriptional repress 89.3 17 0.00058 35.5 20.1 153 207-390 134-289 (393)
213 1flg_A Protein (quinoprotein e 89.3 23 0.0008 37.0 23.8 121 151-289 63-200 (582)
214 2bkl_A Prolyl endopeptidase; m 89.0 21 0.00071 38.1 19.5 151 171-342 250-405 (695)
215 2fp8_A Strictosidine synthase; 89.0 16 0.00053 34.6 19.3 207 92-335 83-314 (322)
216 4ggc_A P55CDC, cell division c 89.0 14 0.00048 34.1 22.1 224 114-390 45-275 (318)
217 2oiz_A Aromatic amine dehydrog 88.8 18 0.00061 35.0 22.1 66 309-389 265-335 (361)
218 2xyi_A Probable histone-bindin 88.8 8.7 0.0003 38.2 15.3 143 159-334 196-353 (430)
219 3ju4_A Endo-N-acetylneuraminid 88.6 20 0.00069 35.3 19.3 198 71-283 267-513 (670)
220 3mmy_A MRNA export factor; mRN 88.4 17 0.00058 34.2 18.4 143 157-335 54-200 (368)
221 3ott_A Two-component system se 88.3 31 0.0011 37.2 24.0 190 98-341 73-267 (758)
222 2mad_H Methylamine dehydrogena 88.1 21 0.00071 34.9 29.0 71 309-391 278-353 (373)
223 1itv_A MMP9; adaptive molecula 87.9 14 0.00047 32.7 15.9 153 93-286 11-176 (195)
224 2ghs_A AGR_C_1268P; regucalcin 87.3 20 0.00069 34.0 17.1 145 156-333 60-209 (326)
225 3k26_A Polycomb protein EED; W 87.1 17 0.00057 34.3 15.7 107 208-336 85-194 (366)
226 3c75_H MADH, methylamine dehyd 87.0 27 0.00091 35.0 18.5 89 309-410 330-422 (426)
227 1pgu_A Actin interacting prote 87.0 30 0.001 35.5 22.5 143 157-334 456-614 (615)
228 3fvz_A Peptidyl-glycine alpha- 86.9 21 0.00072 33.8 25.1 208 98-334 101-322 (329)
229 2cn3_A Xyloglucanase, beta-1,4 86.7 38 0.0013 36.5 29.9 267 72-373 9-322 (737)
230 3gre_A Serine/threonine-protei 86.7 20 0.00067 35.2 16.5 156 156-339 181-364 (437)
231 1qks_A Cytochrome CD1 nitrite 86.6 33 0.0011 35.7 25.3 235 98-388 166-421 (567)
232 1pex_A Collagenase-3, MMP-13; 86.5 17 0.00059 32.4 15.8 154 202-390 28-194 (207)
233 2p4o_A Hypothetical protein; p 86.0 23 0.00077 33.2 26.2 243 74-372 20-277 (306)
234 3hrp_A Uncharacterized protein 85.2 31 0.0011 34.1 27.4 201 98-341 141-361 (409)
235 3c7x_A Matrix metalloproteinas 84.5 15 0.00051 32.5 12.7 154 93-286 10-177 (196)
236 1nr0_A Actin interacting prote 83.2 47 0.0016 34.6 23.0 104 262-389 462-568 (611)
237 1su3_A Interstitial collagenas 83.1 39 0.0013 34.1 16.5 157 150-340 266-438 (450)
238 3o4h_A Acylamino-acid-releasin 82.3 22 0.00074 36.8 15.0 110 156-288 121-231 (582)
239 2gop_A Trilobed protease; beta 80.6 38 0.0013 31.8 16.0 141 172-340 151-297 (347)
240 3c7x_A Matrix metalloproteinas 80.0 23 0.00078 31.3 12.1 153 151-336 10-177 (196)
241 2xzm_R RACK1; ribosome, transl 80.0 41 0.0014 31.8 23.5 63 156-234 87-150 (343)
242 3dr2_A Exported gluconolactona 79.9 12 0.00041 35.1 11.0 155 156-336 56-226 (305)
243 3hrp_A Uncharacterized protein 79.7 50 0.0017 32.6 19.7 151 156-335 141-299 (409)
244 1gen_A Gelatinase A; hydrolase 78.3 38 0.0013 30.4 15.3 156 202-390 35-204 (218)
245 1sqj_A OXG-RCBH, oligoxylogluc 77.9 83 0.0028 34.2 28.8 269 73-373 3-316 (789)
246 3c75_H MADH, methylamine dehyd 77.8 51 0.0018 32.9 15.3 120 156-287 84-212 (426)
247 1nr0_A Actin interacting prote 77.3 72 0.0025 33.1 21.3 192 159-390 162-357 (611)
248 4h5i_A Guanine nucleotide-exch 77.2 53 0.0018 31.5 20.8 181 114-333 157-342 (365)
249 3oyo_A Hemopexin fold protein 77.0 42 0.0014 30.2 13.4 106 155-283 69-197 (225)
250 2fp8_A Strictosidine synthase; 75.5 53 0.0018 30.7 22.4 208 150-390 83-315 (322)
251 2hz6_A Endoplasmic reticulum t 74.5 0.42 1.4E-05 47.3 -1.3 142 154-339 7-156 (369)
252 4ggc_A P55CDC, cell division c 74.4 52 0.0018 30.0 24.8 232 98-388 78-315 (318)
253 3o4h_A Acylamino-acid-releasin 73.8 82 0.0028 32.3 16.3 140 172-338 89-231 (582)
254 1xfd_A DIP, dipeptidyl aminope 73.5 32 0.0011 36.5 13.4 110 174-292 38-151 (723)
255 3ba0_A Macrophage metalloelast 72.8 70 0.0024 31.2 14.4 157 150-340 184-356 (365)
256 1n7d_A LDL receptor, low-densi 72.4 61 0.0021 34.7 15.1 154 155-339 463-619 (699)
257 2p9w_A MAL S 1 allergenic prot 71.5 36 0.0012 32.8 11.6 142 156-319 147-305 (334)
258 2ece_A 462AA long hypothetical 70.3 95 0.0032 31.3 14.9 181 98-292 95-297 (462)
259 1k32_A Tricorn protease; prote 70.1 1.4E+02 0.0049 33.3 22.2 76 156-240 389-468 (1045)
260 1su3_A Interstitial collagenas 69.5 90 0.0031 31.4 14.7 151 202-390 267-434 (450)
261 3ju4_A Endo-N-acetylneuraminid 69.0 94 0.0032 30.7 16.4 203 180-391 267-517 (670)
262 2xzm_R RACK1; ribosome, transl 68.9 77 0.0026 29.7 19.4 63 207-285 87-150 (343)
263 1xfd_A DIP, dipeptidyl aminope 67.6 1.3E+02 0.0043 31.7 17.1 66 224-291 228-296 (723)
264 1gen_A Gelatinase A; hydrolase 66.9 71 0.0024 28.6 16.4 153 150-336 34-204 (218)
265 3hxj_A Pyrrolo-quinoline quino 66.4 81 0.0028 29.0 17.6 178 96-339 105-290 (330)
266 3ba0_A Macrophage metalloelast 66.3 1E+02 0.0034 30.0 15.3 155 93-289 185-355 (365)
267 1hxn_A Hemopexin, HPX; heme, b 64.7 62 0.0021 29.0 11.2 106 151-284 67-197 (219)
268 2p4o_A Hypothetical protein; p 64.5 90 0.0031 28.9 18.5 218 150-411 35-264 (306)
269 2gop_A Trilobed protease; beta 64.0 93 0.0032 28.9 17.4 185 113-341 42-258 (347)
270 1n7d_A LDL receptor, low-densi 63.8 73 0.0025 34.1 13.5 219 115-390 387-616 (699)
271 2xe4_A Oligopeptidase B; hydro 62.7 86 0.003 33.7 14.0 151 113-293 294-467 (751)
272 3frx_A Guanine nucleotide-bind 61.6 1E+02 0.0035 28.6 20.6 147 156-337 76-230 (319)
273 3a0f_A Xyloglucanase; beta-pro 59.9 1.9E+02 0.0065 31.1 27.1 242 72-342 8-292 (763)
274 4d9s_A UVB-resistance protein 59.4 1.4E+02 0.0046 29.3 23.7 20 249-268 233-252 (406)
275 1npe_A Nidogen, entactin; glyc 59.3 1E+02 0.0034 27.7 24.5 195 150-390 39-240 (267)
276 3v65_B Low-density lipoprotein 59.0 1.3E+02 0.0046 29.1 24.0 194 92-335 119-319 (386)
277 1ijq_A LDL receptor, low-densi 58.2 1.2E+02 0.0041 28.3 25.5 197 92-336 33-240 (316)
278 2mad_H Methylamine dehydrogena 56.9 1.4E+02 0.0049 28.7 25.3 118 156-288 32-160 (373)
279 2ece_A 462AA long hypothetical 56.4 1.7E+02 0.0058 29.4 25.6 215 156-387 95-351 (462)
280 1sqj_A OXG-RCBH, oligoxylogluc 56.0 2.2E+02 0.0076 30.7 27.3 246 72-341 45-340 (789)
281 3k6s_A Integrin alpha-X; cell 55.1 2.7E+02 0.0093 31.4 17.2 189 197-389 333-542 (1095)
282 4d9s_A UVB-resistance protein 52.4 1.8E+02 0.006 28.4 14.9 19 249-267 337-355 (406)
283 2p9w_A MAL S 1 allergenic prot 51.9 1.7E+02 0.0057 28.1 15.8 164 207-390 147-325 (334)
284 1ck7_A Protein (gelatinase A); 51.9 70 0.0024 33.7 10.4 158 202-389 448-616 (631)
285 1z68_A Fibroblast activation p 50.9 59 0.002 34.4 10.1 241 114-390 36-348 (719)
286 3m0c_C LDL receptor, low-densi 50.3 2.8E+02 0.0094 30.1 26.5 218 115-389 405-633 (791)
287 3oyo_A Hemopexin fold protein 49.5 1.4E+02 0.0049 26.6 17.2 149 155-334 12-198 (225)
288 3v65_B Low-density lipoprotein 48.7 1.9E+02 0.0066 27.9 27.5 218 114-390 96-320 (386)
289 4a5s_A Dipeptidyl peptidase 4 48.1 2E+02 0.0068 30.5 13.9 107 174-292 37-149 (740)
290 3v64_C Agrin; beta propeller, 47.4 1.9E+02 0.0066 27.4 24.8 194 92-335 76-276 (349)
291 1k32_A Tricorn protease; prote 47.1 3.4E+02 0.012 30.2 28.9 196 114-341 33-242 (1045)
292 3dw8_B Serine/threonine-protei 46.7 2E+02 0.007 27.5 14.5 71 309-390 188-260 (447)
293 3sjl_D Methylamine dehydrogena 46.1 2.2E+02 0.0076 27.8 20.4 73 309-392 291-367 (386)
294 1ijq_A LDL receptor, low-densi 46.1 1.9E+02 0.0064 26.9 28.1 220 114-390 10-240 (316)
295 2oaj_A Protein SNI1; WD40 repe 44.8 3.5E+02 0.012 29.6 22.1 196 156-390 28-244 (902)
296 2xe4_A Oligopeptidase B; hydro 43.6 3.3E+02 0.011 29.0 23.0 142 173-332 247-398 (751)
297 3tc9_A Hypothetical hydrolase; 43.5 2.5E+02 0.0085 27.6 13.3 144 156-333 149-300 (430)
298 1ck7_A Protein (gelatinase A); 42.3 1.6E+02 0.0055 31.0 11.3 154 150-336 447-617 (631)
299 3a0f_A Xyloglucanase; beta-pro 41.3 3.6E+02 0.012 28.9 22.3 216 99-340 88-351 (763)
300 3v64_C Agrin; beta propeller, 40.5 2.4E+02 0.0083 26.7 27.8 218 114-390 53-277 (349)
301 1hxn_A Hemopexin, HPX; heme, b 39.3 1.3E+02 0.0046 26.7 9.0 107 257-388 27-144 (219)
302 3qhy_B Beta-lactamase inhibito 38.3 2.4E+02 0.0082 25.9 15.3 173 90-319 72-246 (282)
303 3lp9_A LS-24; SEED albumin, pl 38.2 41 0.0014 30.4 5.4 61 156-234 129-202 (227)
304 3m0c_C LDL receptor, low-densi 37.5 4.2E+02 0.015 28.6 25.8 189 98-335 435-633 (791)
305 2hz6_A Endoplasmic reticulum t 36.5 7.7 0.00026 37.9 0.1 66 204-289 6-75 (369)
306 3k6s_A Integrin alpha-X; cell 35.4 1.3E+02 0.0046 34.0 10.1 137 249-388 334-480 (1095)
307 3tc9_A Hypothetical hydrolase; 34.2 3.4E+02 0.012 26.5 12.1 144 98-283 149-300 (430)
308 2oaj_A Protein SNI1; WD40 repe 33.6 5E+02 0.017 28.3 26.7 155 157-339 69-247 (902)
309 3p5b_L Low density lipoprotein 33.0 3.4E+02 0.012 26.2 27.1 220 114-390 92-322 (400)
310 3hxj_A Pyrrolo-quinoline quino 32.0 2.9E+02 0.0099 25.0 17.8 140 154-339 105-250 (330)
311 2j04_A TAU60, YPL007P, hypothe 30.2 4.8E+02 0.017 27.0 19.4 181 156-376 96-290 (588)
312 3sre_A PON1, serum paraoxonase 29.8 3.8E+02 0.013 25.7 15.0 148 172-334 82-252 (355)
313 3v4v_A Integrin alpha-4; cell 29.7 96 0.0033 32.5 7.2 134 249-386 166-311 (597)
314 2j04_A TAU60, YPL007P, hypothe 29.1 5E+02 0.017 26.9 15.4 109 207-336 96-213 (588)
315 2oiz_A Aromatic amine dehydrog 28.3 3.8E+02 0.013 25.2 18.0 120 157-287 16-143 (361)
316 2cn3_A Xyloglucanase, beta-1,4 25.6 6.2E+02 0.021 26.8 25.8 104 233-340 231-343 (737)
317 3dw8_B Serine/threonine-protei 23.5 4.8E+02 0.016 24.7 20.6 22 311-337 240-261 (447)
318 4h5i_A Guanine nucleotide-exch 22.8 4.7E+02 0.016 24.4 29.4 144 224-390 157-302 (365)
319 3vu4_A KMHSV2; beta-propeller 22.5 4.7E+02 0.016 24.3 25.8 68 256-335 203-272 (355)
320 1fwx_A Nitrous oxide reductase 21.5 6.9E+02 0.024 25.9 12.0 157 156-335 101-309 (595)
No 1
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=2.4e-45 Score=363.72 Aligned_cols=292 Identities=16% Similarity=0.211 Sum_probs=248.6
Q ss_pred CCCccCCCCCceEeccCCCCCCcceecccccccccCCCCCCCCeEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCC
Q 010115 33 PKRNSNPNSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGL 112 (518)
Q Consensus 33 ~~r~~~~~~~~i~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~~~~p~~R~~~~~~~~~~~lyv~GG~~~~~~ 112 (518)
.+|..+..++.||++||..... ......|++ .+++|..++ ++|.+|.+|++++++++|||+||......
T Consensus 7 ~~r~~~~~~~~i~v~GG~~~~~--~~~~~~~d~------~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~ 75 (302)
T 2xn4_A 7 RLRTPMNLPKLMVVVGGQAPKA--IRSVECYDF------KEERWHQVA---ELPSRRCRAGMVYMAGLVFAVGGFNGSLR 75 (302)
T ss_dssp --------CEEEEEECCBSSSB--CCCEEEEET------TTTEEEEEC---CCSSCCBSCEEEEETTEEEEESCBCSSSB
T ss_pred cCCcccCCCCEEEEECCCCCCC--CCcEEEEcC------cCCcEeEcc---cCCcccccceEEEECCEEEEEeCcCCCcc
Confidence 4566777788899999965421 112223444 888999997 89999999999999999999999987778
Q ss_pred CCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecC
Q 010115 113 LDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 192 (518)
Q Consensus 113 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~ 192 (518)
.+++++||+.+++|+.++++ +.+|..|++++++++||++||... ....+++|+||+.+++|+.+++
T Consensus 76 ~~~~~~~d~~~~~W~~~~~~-----------p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~d~~~~~W~~~~~-- 141 (302)
T 2xn4_A 76 VRTVDSYDPVKDQWTSVANM-----------RDRRSTLGAAVLNGLLYAVGGFDG-STGLSSVEAYNIKSNEWFHVAP-- 141 (302)
T ss_dssp CCCEEEEETTTTEEEEECCC-----------SSCCBSCEEEEETTEEEEEEEECS-SCEEEEEEEEETTTTEEEEECC--
T ss_pred ccceEEECCCCCceeeCCCC-----------CccccceEEEEECCEEEEEcCCCC-CccCceEEEEeCCCCeEeecCC--
Confidence 89999999999999999863 346788999999999999999865 3456899999999999999986
Q ss_pred CCCCCCcceEEEEECCEEEEEcccCCCC-cccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCC
Q 010115 193 DIPVARSGHTVVRASSVLILFGGEDGKR-RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKS 271 (518)
Q Consensus 193 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~ 271 (518)
+|.+|.+|++++++++||++||.+... ..++++++||+.+++|+.+. ++|.+|..|++++++++ |||+||.+..
T Consensus 142 -~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~-iyv~GG~~~~ 216 (302)
T 2xn4_A 142 -MNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIA---EMSTRRSGAGVGVLNNL-LYAVGGHDGP 216 (302)
T ss_dssp -CSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTE-EEEECCBSSS
T ss_pred -CCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECC---CCccccccccEEEECCE-EEEECCCCCC
Confidence 999999999999999999999997653 45889999999999999997 89999999999999988 9999999877
Q ss_pred CCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCC
Q 010115 272 KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSN 351 (518)
Q Consensus 272 ~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r 351 (518)
...+++++||+++++|+.+..+ |.+|..|+++.++++|||+||.+.....+++++||+++++|+.++ ..++.+|
T Consensus 217 ~~~~~~~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~~r 290 (302)
T 2xn4_A 217 LVRKSVEVYDPTTNAWRQVADM---NMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVS---SCMSTGR 290 (302)
T ss_dssp SBCCCEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECS---SCCSSCC
T ss_pred cccceEEEEeCCCCCEeeCCCC---CCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCeEEECC---cccCccc
Confidence 7789999999999999999765 889999999999999999999887777889999999999999975 2346788
Q ss_pred CCceEEEEe
Q 010115 352 KGFTLVLVQ 360 (518)
Q Consensus 352 ~~~s~~~~~ 360 (518)
.+|+++++.
T Consensus 291 ~~~~~~~~~ 299 (302)
T 2xn4_A 291 SYAGVTVID 299 (302)
T ss_dssp BSCEEEEEE
T ss_pred ccceEEEec
Confidence 999999886
No 2
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=3.1e-45 Score=364.30 Aligned_cols=294 Identities=19% Similarity=0.280 Sum_probs=247.4
Q ss_pred CCCCCCCCccCCCCCceEeccCCCCCCcceecccccccccCCCCCCCCeEEeccCCCCCCCccceEEEEECCEEEEEcCc
Q 010115 28 SPIRPPKRNSNPNSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGE 107 (518)
Q Consensus 28 ~p~~~~~r~~~~~~~~i~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~~~~p~~R~~~~~~~~~~~lyv~GG~ 107 (518)
+|..+..+.++..++.||++||.. . ........|++ .+++|..++ ++|.+|.+|++++++++|||+||.
T Consensus 11 ~~~~~~~~~~~~~~~~i~v~GG~~-~-~~~~~~~~~d~------~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~ 79 (308)
T 1zgk_A 11 SGLVPRGSHAPKVGRLIYTAGGYF-R-QSLSYLEAYNP------SNGTWLRLA---DLQVPRSGLAGCVVGGLLYAVGGR 79 (308)
T ss_dssp ----------CCCCCCEEEECCBS-S-SBCCCEEEEET------TTTEEEECC---CCSSCCBSCEEEEETTEEEEECCE
T ss_pred CCeeeCCccccCCCCEEEEEeCcC-C-CCcceEEEEcC------CCCeEeECC---CCCcccccceEEEECCEEEEECCC
Confidence 344445568888899999999972 2 12222223443 899999996 899999999999999999999998
Q ss_pred ----CCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCCCceeEEEEECCCC
Q 010115 108 ----SGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETE 183 (518)
Q Consensus 108 ----~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 183 (518)
......+++++||+.+++|+++++ + +.+|..|++++++++||++||.... ...+++++||+.++
T Consensus 80 ~~~~~~~~~~~~~~~~d~~~~~W~~~~~----------~-p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 80 NNSPDGNTDSSALDCYNPMTNQWSPCAP----------M-SVPRNRIGVGVIDGHIYAVGGSHGC-IHHNSVERYEPERD 147 (308)
T ss_dssp EEETTEEEECCCEEEEETTTTEEEECCC----------C-SSCCBTCEEEEETTEEEEECCEETT-EECCCEEEEETTTT
T ss_pred cCCCCCCeecceEEEECCCCCeEeECCC----------C-CcCccccEEEEECCEEEEEcCCCCC-cccccEEEECCCCC
Confidence 555668999999999999999986 3 3367889999999999999998653 34678999999999
Q ss_pred cEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEE
Q 010115 184 CWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLL 263 (518)
Q Consensus 184 ~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~ly 263 (518)
+|+.+++ +|.+|.+|++++++++||++||.+... .++++++||+.+++|+.++ ++|.+|..|++++++++ ||
T Consensus 148 ~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~-iy 219 (308)
T 1zgk_A 148 EWHLVAP---MLTRRIGVGVAVLNRLLYAVGGFDGTN-RLNSAECYYPERNEWRMIT---AMNTIRSGAGVCVLHNC-IY 219 (308)
T ss_dssp EEEECCC---CSSCCBSCEEEEETTEEEEECCBCSSC-BCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTE-EE
T ss_pred eEeECCC---CCccccceEEEEECCEEEEEeCCCCCC-cCceEEEEeCCCCeEeeCC---CCCCccccceEEEECCE-EE
Confidence 9999986 999999999999999999999998764 4899999999999999997 89999999999999888 99
Q ss_pred EEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEeecC
Q 010115 264 IFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITS 343 (518)
Q Consensus 264 v~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 343 (518)
|+||.+.....+++++||+++++|+.+..+ |.+|..|++++++++|||+||.+.....+++++||+++++|+.++.
T Consensus 220 v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~- 295 (308)
T 1zgk_A 220 AAGGYDGQDQLNSVERYDVETETWTFVAPM---KHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTR- 295 (308)
T ss_dssp EECCBCSSSBCCCEEEEETTTTEEEECCCC---SSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEE-
T ss_pred EEeCCCCCCccceEEEEeCCCCcEEECCCC---CCCccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEEeecCC-
Confidence 999998777789999999999999999765 8899999999999999999999887778999999999999999864
Q ss_pred CCCCCCCCCCceEEEE
Q 010115 344 PSSSVTSNKGFTLVLV 359 (518)
Q Consensus 344 ~~~~~~~r~~~s~~~~ 359 (518)
++.+|.+|+++++
T Consensus 296 ---~p~~r~~~~~~~l 308 (308)
T 1zgk_A 296 ---MTSGRSGVGVAVT 308 (308)
T ss_dssp ---CSSCCBSCEEEEC
T ss_pred ---CCCCcccceeEeC
Confidence 3567888888753
No 3
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=2.8e-45 Score=364.60 Aligned_cols=281 Identities=18% Similarity=0.226 Sum_probs=239.9
Q ss_pred CCCCCCccceEEEEECCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEE
Q 010115 83 GDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLV 162 (518)
Q Consensus 83 ~~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~ 162 (518)
++.|.+|..|+++.++++||++||. ....++++++||+.+++|+.++. + +.+|.+|++++.+++||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~i~v~GG~-~~~~~~~~~~~d~~~~~W~~~~~----------~-p~~r~~~~~~~~~~~lyv~ 76 (308)
T 1zgk_A 9 HSSGLVPRGSHAPKVGRLIYTAGGY-FRQSLSYLEAYNPSNGTWLRLAD----------L-QVPRSGLAGCVVGGLLYAV 76 (308)
T ss_dssp ------------CCCCCCEEEECCB-SSSBCCCEEEEETTTTEEEECCC----------C-SSCCBSCEEEEETTEEEEE
T ss_pred ccCCeeeCCccccCCCCEEEEEeCc-CCCCcceEEEEcCCCCeEeECCC----------C-CcccccceEEEECCEEEEE
Confidence 3567789999999999999999998 45678999999999999999975 2 3467889999999999999
Q ss_pred cCcC---CCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEe
Q 010115 163 GGKT---DSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPL 239 (518)
Q Consensus 163 GG~~---~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 239 (518)
||.. ......+++++||+.+++|+.+++ +|.+|..|++++++++||++||.+.. ..++++++||+.+++|+.+
T Consensus 77 GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~~~W~~~ 152 (308)
T 1zgk_A 77 GGRNNSPDGNTDSSALDCYNPMTNQWSPCAP---MSVPRNRIGVGVIDGHIYAVGGSHGC-IHHNSVERYEPERDEWHLV 152 (308)
T ss_dssp CCEEEETTEEEECCCEEEEETTTTEEEECCC---CSSCCBTCEEEEETTEEEEECCEETT-EECCCEEEEETTTTEEEEC
T ss_pred CCCcCCCCCCeecceEEEECCCCCeEeECCC---CCcCccccEEEEECCEEEEEcCCCCC-cccccEEEECCCCCeEeEC
Confidence 9984 223346789999999999999986 99999999999999999999999775 5689999999999999999
Q ss_pred ecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccC
Q 010115 240 HCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGS 319 (518)
Q Consensus 240 ~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 319 (518)
+ ++|.+|..|++++++++ |||+||.+....++++++||+.+++|+.++.+ |.+|..|++++++++|||+||.+
T Consensus 153 ~---~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~ 225 (308)
T 1zgk_A 153 A---PMLTRRIGVGVAVLNRL-LYAVGGFDGTNRLNSAECYYPERNEWRMITAM---NTIRSGAGVCVLHNCIYAAGGYD 225 (308)
T ss_dssp C---CCSSCCBSCEEEEETTE-EEEECCBCSSCBCCCEEEEETTTTEEEECCCC---SSCCBSCEEEEETTEEEEECCBC
T ss_pred C---CCCccccceEEEEECCE-EEEEeCCCCCCcCceEEEEeCCCCeEeeCCCC---CCccccceEEEECCEEEEEeCCC
Confidence 7 89999999999999888 99999998777789999999999999999765 88999999999999999999998
Q ss_pred CCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCC-CCcEEEEEcccCCcccc
Q 010115 320 RKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNESSMG 394 (518)
Q Consensus 320 ~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~-~~~v~~yd~~~~~w~~~ 394 (518)
.....+++++||+.+++|+.+.. ++.+|.+++++.++ ++||++||.++.. .+++++||+++++|...
T Consensus 226 ~~~~~~~v~~yd~~~~~W~~~~~----~p~~r~~~~~~~~~----~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 293 (308)
T 1zgk_A 226 GQDQLNSVERYDVETETWTFVAP----MKHRRSALGITVHQ----GRIYVLGGYDGHTFLDSVECYDPDTDTWSEV 293 (308)
T ss_dssp SSSBCCCEEEEETTTTEEEECCC----CSSCCBSCEEEEET----TEEEEECCBCSSCBCCEEEEEETTTTEEEEE
T ss_pred CCCccceEEEEeCCCCcEEECCC----CCCCccceEEEEEC----CEEEEEcCcCCCcccceEEEEcCCCCEEeec
Confidence 77778999999999999999863 35678889998885 7899999987654 88999999999998865
No 4
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=1.9e-44 Score=357.98 Aligned_cols=282 Identities=18% Similarity=0.217 Sum_probs=247.8
Q ss_pred CCceEeccCCCCCCcceecccccccccCCCCCCCCeEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCCcEEEEE
Q 010115 41 SECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLN 120 (518)
Q Consensus 41 ~~~i~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~~~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd 120 (518)
.+.||++||... . .....|++ .+++|..++ ++|.+|.+|++++++++|||+||.. ...++++++||
T Consensus 11 ~~~l~~~GG~~~-~---~~~~~~d~------~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~-~~~~~~~~~~d 76 (306)
T 3ii7_A 11 HDYRIALFGGSQ-P---QSCRYFNP------KDYSWTDIR---CPFEKRRDAACVFWDNVVYILGGSQ-LFPIKRMDCYN 76 (306)
T ss_dssp CCEEEEEECCSS-T---TSEEEEET------TTTEEEECC---CCSCCCBSCEEEEETTEEEEECCBS-SSBCCEEEEEE
T ss_pred cceEEEEeCCCC-C---ceEEEecC------CCCCEecCC---CCCcccceeEEEEECCEEEEEeCCC-CCCcceEEEEe
Confidence 467999999554 1 11222444 899999997 7899999999999999999999988 66789999999
Q ss_pred cCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcc
Q 010115 121 FDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSG 200 (518)
Q Consensus 121 ~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~ 200 (518)
+.+++|+.+++ + +.+|.+|++++++++||++||........+++++||+.+++|+.+++ +|.+|..
T Consensus 77 ~~~~~W~~~~~----------~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~---~p~~r~~ 142 (306)
T 3ii7_A 77 VVKDSWYSKLG----------P-PTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPS---MLTQRCS 142 (306)
T ss_dssp TTTTEEEEEEC----------C-SSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECC---CSSCCBS
T ss_pred CCCCeEEECCC----------C-CccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCC---CcCCcce
Confidence 99999999976 2 35678899999999999999997556667899999999999999976 9999999
Q ss_pred eEEEEECCEEEEEcccCCCCc---ccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcE
Q 010115 201 HTVVRASSVLILFGGEDGKRR---KLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDL 277 (518)
Q Consensus 201 ~~~~~~~~~iyv~GG~~~~~~---~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v 277 (518)
|+++.++++||++||.+.... .++++++||+.+++|+.++ ++|.+|..|++++++++ |||+||.+.....+++
T Consensus 143 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~-i~v~GG~~~~~~~~~~ 218 (306)
T 3ii7_A 143 HGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELC---PMIEARKNHGLVFVKDK-IFAVGGQNGLGGLDNV 218 (306)
T ss_dssp CEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTE-EEEECCEETTEEBCCE
T ss_pred eEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECC---CccchhhcceEEEECCE-EEEEeCCCCCCCCceE
Confidence 999999999999999876533 2899999999999999997 89999999999999888 9999999877778999
Q ss_pred EEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEE
Q 010115 278 YSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLV 357 (518)
Q Consensus 278 ~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~ 357 (518)
++||+++++|+.+..+ |.+|..|++++++++|||+||.+.....+++++||+.+++|+.++.. +.+|.+|+++
T Consensus 219 ~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~----~~~r~~~~~~ 291 (306)
T 3ii7_A 219 EYYDIKLNEWKMVSPM---PWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKV----RAFPVTSCLI 291 (306)
T ss_dssp EEEETTTTEEEECCCC---SCCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTEEEEEEEE----ECCSCTTCEE
T ss_pred EEeeCCCCcEEECCCC---CCCccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCc----ccccceeEEE
Confidence 9999999999999765 88999999999999999999998877889999999999999998743 4678889998
Q ss_pred EEee
Q 010115 358 LVQH 361 (518)
Q Consensus 358 ~~~~ 361 (518)
++..
T Consensus 292 ~~~~ 295 (306)
T 3ii7_A 292 CVVD 295 (306)
T ss_dssp EEEE
T ss_pred EECC
Confidence 8863
No 5
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=5.1e-44 Score=353.93 Aligned_cols=286 Identities=19% Similarity=0.327 Sum_probs=248.0
Q ss_pred CCCCceEeccCCCCCCcceecccccccccCCCCCCCCeEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCCcEEE
Q 010115 39 PNSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQV 118 (518)
Q Consensus 39 ~~~~~i~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~~~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~ 118 (518)
..++.||++||..+... ...+++.++. .+++|..++ .+|.+|.+|+++.++++||++||..+....+++++
T Consensus 12 ~~~~~i~~~GG~~~~~~--~~~~~~~~d~----~~~~W~~~~---~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~ 82 (301)
T 2vpj_A 12 GANEVLLVVGGFGSQQS--PIDVVEKYDP----KTQEWSFLP---SITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVEC 82 (301)
T ss_dssp -CCEEEEEECCEETTTE--ECCCEEEEET----TTTEEEECC---CCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEE
T ss_pred cCCCEEEEEeCccCCCc--ceeEEEEEcC----CCCeEEeCC---CCChhhccccEEEECCEEEEEcCCCCCccCceEEE
Confidence 35677999999333322 2233333333 889999997 78899999999999999999999987778899999
Q ss_pred EEcCCCc---EEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCC
Q 010115 119 LNFDRFS---WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIP 195 (518)
Q Consensus 119 yd~~~~~---W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p 195 (518)
||+.+++ |+.+++ + +.+|..|++++++++||++||.... ...+++++||+.+++|+.+++ +|
T Consensus 83 ~d~~~~~~~~W~~~~~----------~-p~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~~~~d~~~~~W~~~~~---~p 147 (301)
T 2vpj_A 83 LDYTADEDGVWYSVAP----------M-NVRRGLAGATTLGDMIYVSGGFDGS-RRHTSMERYDPNIDQWSMLGD---MQ 147 (301)
T ss_dssp EETTCCTTCCCEEECC----------C-SSCCBSCEEEEETTEEEEECCBCSS-CBCCEEEEEETTTTEEEEEEE---CS
T ss_pred EECCCCCCCeeEECCC----------C-CCCccceeEEEECCEEEEEcccCCC-cccceEEEEcCCCCeEEECCC---CC
Confidence 9999999 999976 3 3467889999999999999999753 346789999999999999987 99
Q ss_pred CCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCC
Q 010115 196 VARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLN 275 (518)
Q Consensus 196 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~ 275 (518)
.+|.+|++++++++||++||.+.. ..++++++||+.+++|+.+. ++|.+|..|++++++++ |||+||.+.....+
T Consensus 148 ~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~-i~v~GG~~~~~~~~ 222 (301)
T 2vpj_A 148 TAREGAGLVVASGVIYCLGGYDGL-NILNSVEKYDPHTGHWTNVT---PMATKRSGAGVALLNDH-IYVVGGFDGTAHLS 222 (301)
T ss_dssp SCCBSCEEEEETTEEEEECCBCSS-CBCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTE-EEEECCBCSSSBCC
T ss_pred CCcccceEEEECCEEEEECCCCCC-cccceEEEEeCCCCcEEeCC---CCCcccccceEEEECCE-EEEEeCCCCCcccc
Confidence 999999999999999999998876 46899999999999999997 89999999999999988 99999998777789
Q ss_pred cEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCce
Q 010115 276 DLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFT 355 (518)
Q Consensus 276 ~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s 355 (518)
++++||+++++|+.+..+ |.+|..|++++++++|||+||.+.....+++++||+++++|+.++. ++.+|.+|+
T Consensus 223 ~v~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~----~~~~r~~~~ 295 (301)
T 2vpj_A 223 SVEAYNIRTDSWTTVTSM---TTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTS----MGTQRCDAG 295 (301)
T ss_dssp CEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEEEEEEE----EEEEEESCE
T ss_pred eEEEEeCCCCcEEECCCC---CCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeEEEcCC----CCcccccce
Confidence 999999999999999765 8899999999999999999998877777899999999999999874 356788899
Q ss_pred EEEEe
Q 010115 356 LVLVQ 360 (518)
Q Consensus 356 ~~~~~ 360 (518)
++++.
T Consensus 296 ~~~~~ 300 (301)
T 2vpj_A 296 VCVLR 300 (301)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 88874
No 6
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=7.4e-43 Score=345.83 Aligned_cols=269 Identities=19% Similarity=0.283 Sum_probs=234.0
Q ss_pred EEEECCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCCCce
Q 010115 94 AAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRV 173 (518)
Q Consensus 94 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 173 (518)
.+.+++.||++||... ...+++++||+.+++|..++. + +.+|.+|++++++++||++||.... ...+
T Consensus 11 ~~~~~~~i~v~GG~~~-~~~~~~~~~d~~~~~W~~~~~----------~-p~~r~~~~~~~~~~~lyv~GG~~~~-~~~~ 77 (302)
T 2xn4_A 11 PMNLPKLMVVVGGQAP-KAIRSVECYDFKEERWHQVAE----------L-PSRRCRAGMVYMAGLVFAVGGFNGS-LRVR 77 (302)
T ss_dssp ----CEEEEEECCBSS-SBCCCEEEEETTTTEEEEECC----------C-SSCCBSCEEEEETTEEEEESCBCSS-SBCC
T ss_pred ccCCCCEEEEECCCCC-CCCCcEEEEcCcCCcEeEccc----------C-CcccccceEEEECCEEEEEeCcCCC-cccc
Confidence 4456889999999765 467899999999999999975 3 3467889999999999999998653 3467
Q ss_pred eEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcE
Q 010115 174 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV 253 (518)
Q Consensus 174 ~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~ 253 (518)
++++||+.+++|+.+++ +|.+|.+|++++++++||++||.+.. ..++++++||+.+++|+.++ ++|.+|..|+
T Consensus 78 ~~~~~d~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~ 150 (302)
T 2xn4_A 78 TVDSYDPVKDQWTSVAN---MRDRRSTLGAAVLNGLLYAVGGFDGS-TGLSSVEAYNIKSNEWFHVA---PMNTRRSSVG 150 (302)
T ss_dssp CEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEEEEECSS-CEEEEEEEEETTTTEEEEEC---CCSSCCBSCE
T ss_pred ceEEECCCCCceeeCCC---CCccccceEEEEECCEEEEEcCCCCC-ccCceEEEEeCCCCeEeecC---CCCCcccCce
Confidence 89999999999999986 99999999999999999999999765 46889999999999999997 8899999999
Q ss_pred EEEECCcEEEEEcCCCCC--CCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCCCcCeEEEEE
Q 010115 254 AALYDDKNLLIFGGSSKS--KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFD 331 (518)
Q Consensus 254 ~~~~~~~~lyv~GG~~~~--~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd 331 (518)
+++++++ ||++||.+.. ...+++++||+.+++|+.+..+ |.+|..|++++++++|||+||.+.....+++++||
T Consensus 151 ~~~~~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd 226 (302)
T 2xn4_A 151 VGVVGGL-LYAVGGYDVASRQCLSTVECYNATTNEWTYIAEM---STRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYD 226 (302)
T ss_dssp EEEETTE-EEEECCEETTTTEECCCEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEE
T ss_pred EEEECCE-EEEEeCCCCCCCccccEEEEEeCCCCcEEECCCC---ccccccccEEEECCEEEEECCCCCCcccceEEEEe
Confidence 9999988 9999998654 3578999999999999999765 88999999999999999999998777788999999
Q ss_pred CCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCC-CCcEEEEEcccCCcccc
Q 010115 332 ILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNESSMG 394 (518)
Q Consensus 332 ~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~-~~~v~~yd~~~~~w~~~ 394 (518)
+.+++|+.+.. ++.+|.+|+++.++ ++||++||.++.. .+++++||+++++|...
T Consensus 227 ~~~~~W~~~~~----~~~~r~~~~~~~~~----~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 282 (302)
T 2xn4_A 227 PTTNAWRQVAD----MNMCRRNAGVCAVN----GLLYVVGGDDGSCNLASVEYYNPTTDKWTVV 282 (302)
T ss_dssp TTTTEEEEECC----CSSCCBSCEEEEET----TEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred CCCCCEeeCCC----CCCccccCeEEEEC----CEEEEECCcCCCcccccEEEEcCCCCeEEEC
Confidence 99999999873 34678888888875 7899999987654 78999999999998764
No 7
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=7.4e-43 Score=346.51 Aligned_cols=263 Identities=17% Similarity=0.225 Sum_probs=235.2
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCCCceeEEE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWT 177 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 177 (518)
.+.||++||... .+++++||+.+++|+.+++ + +.+|.+|++++++++||++||.. ....+++++
T Consensus 11 ~~~l~~~GG~~~---~~~~~~~d~~~~~W~~~~~----------~-p~~r~~~~~~~~~~~lyv~GG~~--~~~~~~~~~ 74 (306)
T 3ii7_A 11 HDYRIALFGGSQ---PQSCRYFNPKDYSWTDIRC----------P-FEKRRDAACVFWDNVVYILGGSQ--LFPIKRMDC 74 (306)
T ss_dssp CCEEEEEECCSS---TTSEEEEETTTTEEEECCC----------C-SCCCBSCEEEEETTEEEEECCBS--SSBCCEEEE
T ss_pred cceEEEEeCCCC---CceEEEecCCCCCEecCCC----------C-CcccceeEEEEECCEEEEEeCCC--CCCcceEEE
Confidence 378999999765 7899999999999999976 2 34678899999999999999987 456789999
Q ss_pred EECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEE
Q 010115 178 FDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY 257 (518)
Q Consensus 178 yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~ 257 (518)
||+.+++|+.+++ +|.+|.+|+++.++++||++||.+.....++++++||+.+++|+.++ ++|.+|..|+++++
T Consensus 75 ~d~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~ 148 (306)
T 3ii7_A 75 YNVVKDSWYSKLG---PPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP---SMLTQRCSHGMVEA 148 (306)
T ss_dssp EETTTTEEEEEEC---CSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEE
T ss_pred EeCCCCeEEECCC---CCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC---CCcCCcceeEEEEE
Confidence 9999999999986 99999999999999999999999855567899999999999999997 89999999999999
Q ss_pred CCcEEEEEcCCCCCCC----CCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCCCcCeEEEEECC
Q 010115 258 DDKNLLIFGGSSKSKT----LNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDIL 333 (518)
Q Consensus 258 ~~~~lyv~GG~~~~~~----~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~ 333 (518)
+++ |||+||...... .+++++||+++++|+.++.+ |.+|..|++++++++|||+||.+.....+++++||+.
T Consensus 149 ~~~-iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~ 224 (306)
T 3ii7_A 149 NGL-IYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPM---IEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIK 224 (306)
T ss_dssp TTE-EEEECCEESCTTTCEECCCEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETT
T ss_pred CCE-EEEECCCCCCCCcccccceEEEeCCCCCeEEECCCc---cchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCC
Confidence 888 999999876555 89999999999999999765 8899999999999999999998877778899999999
Q ss_pred CCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCC-CCcEEEEEcccCCcccc
Q 010115 334 KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNESSMG 394 (518)
Q Consensus 334 ~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~-~~~v~~yd~~~~~w~~~ 394 (518)
+++|+.+.. ++.+|.+++++.++ ++||++||.++.. .+++++||+++++|...
T Consensus 225 ~~~W~~~~~----~p~~r~~~~~~~~~----~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~ 278 (306)
T 3ii7_A 225 LNEWKMVSP----MPWKGVTVKCAAVG----SIVYVLAGFQGVGRLGHILEYNTETDKWVAN 278 (306)
T ss_dssp TTEEEECCC----CSCCBSCCEEEEET----TEEEEEECBCSSSBCCEEEEEETTTTEEEEE
T ss_pred CCcEEECCC----CCCCccceeEEEEC----CEEEEEeCcCCCeeeeeEEEEcCCCCeEEeC
Confidence 999999863 35678889998885 7899999987654 88999999999999874
No 8
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=8.3e-44 Score=355.53 Aligned_cols=293 Identities=19% Similarity=0.251 Sum_probs=247.2
Q ss_pred CCCccCCCCCceEeccCCCCCCcceecccccccccCCCCCCCCeEEeccCCCCCCCccceEEEEECCEEEEEcCcCC--C
Q 010115 33 PKRNSNPNSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESG--N 110 (518)
Q Consensus 33 ~~r~~~~~~~~i~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~~~~p~~R~~~~~~~~~~~lyv~GG~~~--~ 110 (518)
.+|......+.||++||.. ...|++ .+++|...+. +.|.+|.+|++++++++|||+||... .
T Consensus 7 ~~r~~~~~~~~i~~~GG~~--------~~~yd~------~~~~W~~~~~--~~~~~r~~~~~~~~~~~lyv~GG~~~~~~ 70 (318)
T 2woz_A 7 IPRHGMFVKDLILLVNDTA--------AVAYDP------MENECYLTAL--AEQIPRNHSSIVTQQNQVYVVGGLYVDEE 70 (318)
T ss_dssp SCCCCCSEEEEEEEECSSE--------EEEEET------TTTEEEEEEE--CTTSCSSEEEEECSSSCEEEEESSCC---
T ss_pred cccccceecchhhhccccc--------eEEECC------CCCceecccC--CccCCccceEEEEECCEEEEECCcccCcc
Confidence 4556655667899999932 123555 8999998542 34578999999999999999999531 1
Q ss_pred ----CCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCC-CCCCceeEEEEECCCCcE
Q 010115 111 ----GLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTD-SGSDRVSVWTFDTETECW 185 (518)
Q Consensus 111 ----~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~v~~yd~~t~~W 185 (518)
...+++++||+.+++|+.++++ + .+|..|++++++++||++||... .....+++|+||+.+++|
T Consensus 71 ~~~~~~~~~~~~~d~~~~~W~~~~~~----------p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W 139 (318)
T 2woz_A 71 NKDQPLQSYFFQLDNVSSEWVGLPPL----------P-SARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKW 139 (318)
T ss_dssp ----CCCBEEEEEETTTTEEEECSCB----------S-SCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEE
T ss_pred ccCCCccccEEEEeCCCCcEEECCCC----------C-ccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCE
Confidence 1234599999999999999763 3 35788999999999999999874 345578999999999999
Q ss_pred EEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEE
Q 010115 186 SVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIF 265 (518)
Q Consensus 186 ~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~ 265 (518)
+.+++ +|.+|.+|++++++++||++||.+.....++++++||+.+++|+.++ ++|.+|..|++++++++ |||+
T Consensus 140 ~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~-iyv~ 212 (318)
T 2woz_A 140 SEVKN---LPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLA---PMKTPRSMFGVAIHKGK-IVIA 212 (318)
T ss_dssp EEECC---CSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTE-EEEE
T ss_pred eECCC---CCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECC---CCCCCcccceEEEECCE-EEEE
Confidence 99986 99999999999999999999999766567899999999999999997 89999999999999988 9999
Q ss_pred cCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCC---------CCcCeEEEEECCCCc
Q 010115 266 GGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK---------KRHAETLIFDILKGE 336 (518)
Q Consensus 266 GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~---------~~~~~v~~yd~~~~~ 336 (518)
||.+.....+++++||+++++|+.+..+ |.+|..|++++++++|||+||.... ...+++++||+.+++
T Consensus 213 GG~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 213 GGVTEDGLSASVEAFDLKTNKWEVMTEF---PQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp EEEETTEEEEEEEEEETTTCCEEECCCC---SSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred cCcCCCCccceEEEEECCCCeEEECCCC---CCcccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 9998777788999999999999999765 8899999999999999999998642 346899999999999
Q ss_pred eEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcC
Q 010115 337 WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGG 372 (518)
Q Consensus 337 W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG 372 (518)
|+++. +.+|.+|+++++. ++||++.-
T Consensus 290 W~~~~------~~~r~~~~~~~~~----~~iyi~~~ 315 (318)
T 2woz_A 290 WAGML------KEIRYASGASCLA----TRLNLFKL 315 (318)
T ss_dssp EEEEE------SCCGGGTTCEEEE----EEEEGGGC
T ss_pred ehhhc------ccccccccceeeC----CEEEEEEe
Confidence 99982 4678889999887 78888753
No 9
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=6.4e-44 Score=355.87 Aligned_cols=286 Identities=15% Similarity=0.203 Sum_probs=242.2
Q ss_pred CCceEeccCCCCCCcceecccccccccCCCCCCCCeEEeccCCCCCCCccceEEEEECCEEEEEcCcC-----C-CCCCC
Q 010115 41 SECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGES-----G-NGLLD 114 (518)
Q Consensus 41 ~~~i~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~~~~p~~R~~~~~~~~~~~lyv~GG~~-----~-~~~~~ 114 (518)
.+.|+++|| ++ ...|++ .+++|...+ .+.|.+|.+|++++++++|||+||.. . ....+
T Consensus 4 ~~~l~~~GG--~~------~~~yd~------~~~~W~~~~--~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 67 (315)
T 4asc_A 4 QDLIFMISE--EG------AVAYDP------AANECYCAS--LSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSA 67 (315)
T ss_dssp EEEEEEEET--TE------EEEEET------TTTEEEEEE--CCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEE
T ss_pred ceEEEEEcC--Cc------eEEECC------CCCeEecCC--CCCCCCccceEEEEECCEEEEEcCcccCCCCCcccccc
Confidence 456899999 11 122555 889998732 23366899999999999999999962 1 22345
Q ss_pred cEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCC--CCCCceeEEEEECCCCcEEEeeecC
Q 010115 115 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTD--SGSDRVSVWTFDTETECWSVVEAKG 192 (518)
Q Consensus 115 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~~v~~yd~~t~~W~~~~~~~ 192 (518)
++++||+.+++|+.++++ +.+|.+|++++++++||++||... .....+++++||+.+++|+.+++
T Consensus 68 ~~~~~d~~~~~W~~~~~~-----------p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~-- 134 (315)
T 4asc_A 68 YFLQFDHLDSEWLGMPPL-----------PSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDP-- 134 (315)
T ss_dssp EEEEEETTTTEEEECCCB-----------SSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCC--
T ss_pred ceEEecCCCCeEEECCCC-----------CcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCC--
Confidence 699999999999999763 346788999999999999999763 34567899999999999999986
Q ss_pred CCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCC
Q 010115 193 DIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK 272 (518)
Q Consensus 193 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~ 272 (518)
+|.+|.+|+++.++++||++||.+.....++++++||+.+++|+.++ ++|.+|..|++++++++ |||+||.+...
T Consensus 135 -~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~-iyv~GG~~~~~ 209 (315)
T 4asc_A 135 -LPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELA---PMQTARSLFGATVHDGR-IIVAAGVTDTG 209 (315)
T ss_dssp -CSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTE-EEEEEEECSSS
T ss_pred -CCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECC---CCCCchhceEEEEECCE-EEEEeccCCCC
Confidence 99999999999999999999999666678999999999999999997 89999999999999988 99999998777
Q ss_pred CCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCC---------CCcCeEEEEECCCCceEEeecC
Q 010115 273 TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK---------KRHAETLIFDILKGEWSVAITS 343 (518)
Q Consensus 273 ~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~---------~~~~~v~~yd~~~~~W~~~~~~ 343 (518)
..+++++||+++++|+.++.+ |.+|..|++++++++|||+||.+.. ...+++++||+++++|+.+.
T Consensus 210 ~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-- 284 (315)
T 4asc_A 210 LTSSAEVYSITDNKWAPFEAF---PQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVL-- 284 (315)
T ss_dssp EEEEEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEEE--
T ss_pred ccceEEEEECCCCeEEECCCC---CCcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhhc--
Confidence 788999999999999999765 8999999999999999999998531 34678999999999999983
Q ss_pred CCCCCCCCCCceEEEEeeCCccEEEEEcCC
Q 010115 344 PSSSVTSNKGFTLVLVQHKEKDFLVAFGGI 373 (518)
Q Consensus 344 ~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~ 373 (518)
+.+|.++++++++ ++||++...
T Consensus 285 ----~~~r~~~~~~~~~----~~l~v~~~~ 306 (315)
T 4asc_A 285 ----REIAYAAGATFLP----VRLNVLRLT 306 (315)
T ss_dssp ----SCSSCCSSCEEEE----EEECGGGSE
T ss_pred ----cCCcCccceEEeC----CEEEEEEeh
Confidence 4568888998887 778887653
No 10
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.6e-42 Score=343.18 Aligned_cols=268 Identities=19% Similarity=0.271 Sum_probs=237.5
Q ss_pred EECCEEEEEcC-cCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcee
Q 010115 96 VIGNKMIVVGG-ESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVS 174 (518)
Q Consensus 96 ~~~~~lyv~GG-~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 174 (518)
.+++.||++|| .......+++++||+.+++|+.++. ++ .+|.+|+++..+++||++||... ....++
T Consensus 12 ~~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~----------~p-~~r~~~~~~~~~~~l~v~GG~~~-~~~~~~ 79 (301)
T 2vpj_A 12 GANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPS----------IT-RKRRYVASVSLHDRIYVIGGYDG-RSRLSS 79 (301)
T ss_dssp -CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCC----------CS-SCCBSCEEEEETTEEEEECCBCS-SCBCCC
T ss_pred cCCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCC----------CC-hhhccccEEEECCEEEEEcCCCC-CccCce
Confidence 36789999999 5656678999999999999999986 33 36788999999999999999873 445678
Q ss_pred EEEEECCCCc---EEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCC
Q 010115 175 VWTFDTETEC---WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 251 (518)
Q Consensus 175 v~~yd~~t~~---W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~ 251 (518)
+++||+.+++ |+.+++ +|.+|..|+++.++++||++||.+.. ..++++++||+.+++|+.++ ++|.+|..
T Consensus 80 ~~~~d~~~~~~~~W~~~~~---~p~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~~~~d~~~~~W~~~~---~~p~~r~~ 152 (301)
T 2vpj_A 80 VECLDYTADEDGVWYSVAP---MNVRRGLAGATTLGDMIYVSGGFDGS-RRHTSMERYDPNIDQWSMLG---DMQTAREG 152 (301)
T ss_dssp EEEEETTCCTTCCCEEECC---CSSCCBSCEEEEETTEEEEECCBCSS-CBCCEEEEEETTTTEEEEEE---ECSSCCBS
T ss_pred EEEEECCCCCCCeeEECCC---CCCCccceeEEEECCEEEEEcccCCC-cccceEEEEcCCCCeEEECC---CCCCCccc
Confidence 9999999999 999976 99999999999999999999999865 45899999999999999997 78999999
Q ss_pred cEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCCCcCeEEEEE
Q 010115 252 HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFD 331 (518)
Q Consensus 252 ~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd 331 (518)
|++++++++ ||++||.+.....+++++||+++++|+.++.+ |.+|..|++++++++|||+||.+.....+++++||
T Consensus 153 ~~~~~~~~~-iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~---p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd 228 (301)
T 2vpj_A 153 AGLVVASGV-IYCLGGYDGLNILNSVEKYDPHTGHWTNVTPM---ATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYN 228 (301)
T ss_dssp CEEEEETTE-EEEECCBCSSCBCCCEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEE
T ss_pred ceEEEECCE-EEEECCCCCCcccceEEEEeCCCCcEEeCCCC---CcccccceEEEECCEEEEEeCCCCCcccceEEEEe
Confidence 999999888 99999998877889999999999999999765 88999999999999999999998777789999999
Q ss_pred CCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCC-CCcEEEEEcccCCcccc
Q 010115 332 ILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNESSMG 394 (518)
Q Consensus 332 ~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~-~~~v~~yd~~~~~w~~~ 394 (518)
+.+++|+.++. ++.+|.+|+++.++ ++||++||.++.. .+++++||+++++|...
T Consensus 229 ~~~~~W~~~~~----~p~~r~~~~~~~~~----~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 284 (301)
T 2vpj_A 229 IRTDSWTTVTS----MTTPRCYVGATVLR----GRLYAIAGYDGNSLLSSIECYDPIIDSWEVV 284 (301)
T ss_dssp TTTTEEEEECC----CSSCCBSCEEEEET----TEEEEECCBCSSSBEEEEEEEETTTTEEEEE
T ss_pred CCCCcEEECCC----CCCcccceeEEEEC----CEEEEEcCcCCCcccccEEEEcCCCCeEEEc
Confidence 99999999863 35678889988885 7799999987654 68999999999998764
No 11
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=3.7e-42 Score=343.10 Aligned_cols=261 Identities=17% Similarity=0.227 Sum_probs=227.1
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCC-CCCccceEEEEECCEEEEEcCcC----C-CCCC
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLK-IPACRGHSLISWGKKVLLVGGKT----D-SGSD 171 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~iyv~GG~~----~-~~~~ 171 (518)
++.||++|| +++++||+.+++|+. ++ ++ +.+|.+|++++.+++||++||.. . ....
T Consensus 4 ~~~l~~~GG-------~~~~~yd~~~~~W~~-~~----------~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 65 (315)
T 4asc_A 4 QDLIFMISE-------EGAVAYDPAANECYC-AS----------LSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPM 65 (315)
T ss_dssp EEEEEEEET-------TEEEEEETTTTEEEE-EE----------CCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCE
T ss_pred ceEEEEEcC-------CceEEECCCCCeEec-CC----------CCCCCCccceEEEEECCEEEEEcCcccCCCCCcccc
Confidence 467999999 679999999999987 44 23 34788999999999999999973 1 2223
Q ss_pred ceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCC--CCcccCcEEEEEcCCCcEEEeecCCCCCCCC
Q 010115 172 RVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDG--KRRKLNDLHMFDLKSLTWLPLHCTGTGPSPR 249 (518)
Q Consensus 172 ~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r 249 (518)
.+++++||+.+++|+.+++ +|.+|.+|+++.++++||++||.+. ....++++++||+.+++|++++ ++|.+|
T Consensus 66 ~~~~~~~d~~~~~W~~~~~---~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r 139 (315)
T 4asc_A 66 SAYFLQFDHLDSEWLGMPP---LPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD---PLPYVV 139 (315)
T ss_dssp EEEEEEEETTTTEEEECCC---BSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECC---CCSSCC
T ss_pred ccceEEecCCCCeEEECCC---CCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECC---CCCCcc
Confidence 4569999999999999976 9999999999999999999999762 3467899999999999999997 899999
Q ss_pred CCcEEEEECCcEEEEEcCC-CCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCCCcCeEE
Q 010115 250 SNHVAALYDDKNLLIFGGS-SKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETL 328 (518)
Q Consensus 250 ~~~~~~~~~~~~lyv~GG~-~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~ 328 (518)
..|++++++++ |||+||. .....++++++||+.+++|+.++++ |.+|..|++++++++|||+||.+.....++++
T Consensus 140 ~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 215 (315)
T 4asc_A 140 YGHTVLSHMDL-VYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPM---QTARSLFGATVHDGRIIVAAGVTDTGLTSSAE 215 (315)
T ss_dssp BSCEEEEETTE-EEEECCBCTTSCBCCCEEEEETTTTEEEECCCC---SSCCBSCEEEEETTEEEEEEEECSSSEEEEEE
T ss_pred cceeEEEECCE-EEEEeCCCCCCcccceEEEEeCCCCeEEECCCC---CCchhceEEEEECCEEEEEeccCCCCccceEE
Confidence 99999999998 9999999 5567789999999999999999766 88999999999999999999998777788999
Q ss_pred EEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCC----------CCCCcEEEEEcccCCcccc
Q 010115 329 IFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK----------EPSNQVEVLSIEKNESSMG 394 (518)
Q Consensus 329 ~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~----------~~~~~v~~yd~~~~~w~~~ 394 (518)
+||+.+++|+.++. ++.+|.+|+++.++ ++||++||.+. ...+++|+||+++++|+..
T Consensus 216 ~yd~~~~~W~~~~~----~p~~r~~~~~~~~~----~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 216 VYSITDNKWAPFEA----FPQERSSLSLVSLV----GTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EEETTTTEEEEECC----CSSCCBSCEEEEET----TEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred EEECCCCeEEECCC----CCCcccceeEEEEC----CEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 99999999999863 45778899999885 68999999853 2267899999999999875
No 12
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=7.9e-42 Score=346.61 Aligned_cols=281 Identities=17% Similarity=0.229 Sum_probs=228.5
Q ss_pred CCCCCccceEEEEECCEEEEEcCcCCCCCCCcEEEEEcC--CCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEE
Q 010115 84 DKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFD--RFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLL 161 (518)
Q Consensus 84 ~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv 161 (518)
++|.+|.+|++++++++|||+||... +++++||+. +++|+.+++ +|..+|.+|++++++++|||
T Consensus 5 ~lP~~r~~~~~~~~~~~iyv~GG~~~----~~~~~~d~~~~~~~W~~~~~----------~p~~~R~~~~~~~~~~~lyv 70 (357)
T 2uvk_A 5 ETPVPFKSGTGAIDNDTVYIGLGSAG----TAWYKLDTQAKDKKWTALAA----------FPGGPRDQATSAFIDGNLYV 70 (357)
T ss_dssp CCSSCCCSCEEEEETTEEEEECGGGT----TCEEEEETTSSSCCEEECCC----------CTTCCCBSCEEEEETTEEEE
T ss_pred CCCccccceEEEEECCEEEEEeCcCC----CeEEEEccccCCCCeeECCC----------CCCCcCccceEEEECCEEEE
Confidence 78999999999999999999999764 589999998 489999987 44457899999999999999
Q ss_pred EcCc-C---CCCCCceeEEEEECCCCcEEEeeecCCCC-CCCcceEEEEECCEEEEEcccCCCC----------------
Q 010115 162 VGGK-T---DSGSDRVSVWTFDTETECWSVVEAKGDIP-VARSGHTVVRASSVLILFGGEDGKR---------------- 220 (518)
Q Consensus 162 ~GG~-~---~~~~~~~~v~~yd~~t~~W~~~~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~---------------- 220 (518)
+||. . ......+++|+||+.+++|+.+++ ++ .+|.+|++++.+++||++||.+...
T Consensus 71 ~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~ 147 (357)
T 2uvk_A 71 FGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMS---HAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDST 147 (357)
T ss_dssp ECCEEECTTSCEEECCCEEEEETTTTEEEECSC---CCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHH
T ss_pred EcCCCCCCCccceeeccEEEEeCCCCcEEECCC---CCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCccc
Confidence 9998 2 122346789999999999999987 55 9999999999999999999986431
Q ss_pred -----------------cccCcEEEEEcCCCcEEEeecCCCCCCCCCC-cEEEEECCcEEEEEcCCCCC-CCCCcEEEEE
Q 010115 221 -----------------RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN-HVAALYDDKNLLIFGGSSKS-KTLNDLYSLD 281 (518)
Q Consensus 221 -----------------~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~-~~~~~~~~~~lyv~GG~~~~-~~~~~v~~yd 281 (518)
..++++++||+.+++|+.+. ++|.+|.. |++++++++ |||+||.+.. ...++++.||
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~v~~~d 223 (357)
T 2uvk_A 148 AIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAG---ESPWYGTAGAAVVNKGDK-TWLINGEAKPGLRTDAVFELD 223 (357)
T ss_dssp HHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEE---ECSSCCCBSCEEEEETTE-EEEECCEEETTEECCCEEEEE
T ss_pred chhhhhhhhccccccccCCcccEEEEeCCCCcEEECC---CCCCCCcccccEEEECCE-EEEEeeecCCCcccCceEEEE
Confidence 24689999999999999997 78876555 899999888 9999998543 3568899998
Q ss_pred c--CCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCC-----------------CCcCeEEEEECCCCceEEeec
Q 010115 282 F--ETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK-----------------KRHAETLIFDILKGEWSVAIT 342 (518)
Q Consensus 282 ~--~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-----------------~~~~~v~~yd~~~~~W~~~~~ 342 (518)
+ ++++|+.+..+ ..|.+|..|++++++++|||+||.+.. ....++++||+.+++|+.+..
T Consensus 224 ~d~~~~~W~~~~~~-~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~ 302 (357)
T 2uvk_A 224 FTGNNLKWNKLAPV-SSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGE 302 (357)
T ss_dssp CC---CEEEECCCS-STTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEE
T ss_pred ecCCCCcEEecCCC-CCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCC
Confidence 7 99999999876 234557788899999999999996432 234678999999999999874
Q ss_pred CCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCC--CCcEEEEEcccCCcccc
Q 010115 343 SPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP--SNQVEVLSIEKNESSMG 394 (518)
Q Consensus 343 ~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~--~~~v~~yd~~~~~w~~~ 394 (518)
. +.+|.+|+++.+. ++||||||.+... .+++++|++++++|...
T Consensus 303 ~----p~~r~~~~~~~~~----~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 303 L----SQGRAYGVSLPWN----NSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp C----SSCCBSSEEEEET----TEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred C----CCCcccceeEEeC----CEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence 3 4678889988875 7899999987543 68999999999998653
No 13
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=1.4e-40 Score=332.23 Aligned_cols=270 Identities=17% Similarity=0.231 Sum_probs=228.6
Q ss_pred CCccceEEEEECCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcC
Q 010115 87 IPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKT 166 (518)
Q Consensus 87 ~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~ 166 (518)
.+|.++.. ++.||++||. ++++||+.+++|...+. ..+.+|.+|++++.+++||++||..
T Consensus 7 ~~r~~~~~---~~~i~~~GG~-------~~~~yd~~~~~W~~~~~----------~~~~~r~~~~~~~~~~~lyv~GG~~ 66 (318)
T 2woz_A 7 IPRHGMFV---KDLILLVNDT-------AAVAYDPMENECYLTAL----------AEQIPRNHSSIVTQQNQVYVVGGLY 66 (318)
T ss_dssp SCCCCCSE---EEEEEEECSS-------EEEEEETTTTEEEEEEE----------CTTSCSSEEEEECSSSCEEEEESSC
T ss_pred ccccccee---cchhhhcccc-------ceEEECCCCCceecccC----------CccCCccceEEEEECCEEEEECCcc
Confidence 45665543 4689999993 48999999999998432 2234678899999999999999964
Q ss_pred CC-----CCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCC-CCcccCcEEEEEcCCCcEEEee
Q 010115 167 DS-----GSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDG-KRRKLNDLHMFDLKSLTWLPLH 240 (518)
Q Consensus 167 ~~-----~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~yd~~t~~W~~~~ 240 (518)
.. ....+++++||+.+++|+.+++ +|.+|.+|++++++++||++||.+. ....++++++||+.+++|+.++
T Consensus 67 ~~~~~~~~~~~~~~~~~d~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~ 143 (318)
T 2woz_A 67 VDEENKDQPLQSYFFQLDNVSSEWVGLPP---LPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK 143 (318)
T ss_dssp C-------CCCBEEEEEETTTTEEEECSC---BSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC
T ss_pred cCccccCCCccccEEEEeCCCCcEEECCC---CCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC
Confidence 21 1223469999999999999975 9999999999999999999999873 3457899999999999999997
Q ss_pred cCCCCCCCCCCcEEEEECCcEEEEEcCCC-CCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccC
Q 010115 241 CTGTGPSPRSNHVAALYDDKNLLIFGGSS-KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGS 319 (518)
Q Consensus 241 ~~g~~p~~r~~~~~~~~~~~~lyv~GG~~-~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 319 (518)
++|.+|..|++++++++ |||+||.. ....++++++||+.+++|+.++.+ |.+|..|++++++++|||+||..
T Consensus 144 ---~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~ 216 (318)
T 2woz_A 144 ---NLPIKVYGHNVISHNGM-IYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPM---KTPRSMFGVAIHKGKIVIAGGVT 216 (318)
T ss_dssp ---CCSSCEESCEEEEETTE-EEEECCEESSSCBCCCEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEEEEEE
T ss_pred ---CCCCcccccEEEEECCE-EEEEcCCCCCCCccceEEEEcCCCCEEEECCCC---CCCcccceEEEECCEEEEEcCcC
Confidence 89999999999999888 99999984 445688999999999999999765 88999999999999999999988
Q ss_pred CCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCC----------CCCCcEEEEEcccC
Q 010115 320 RKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK----------EPSNQVEVLSIEKN 389 (518)
Q Consensus 320 ~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~----------~~~~~v~~yd~~~~ 389 (518)
.....+++++||+.+++|+.+.. .+.+|.+|+++.++ ++||++||... ...+++|+||++++
T Consensus 217 ~~~~~~~~~~yd~~~~~W~~~~~----~p~~r~~~~~~~~~----~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 217 EDGLSASVEAFDLKTNKWEVMTE----FPQERSSISLVSLA----GSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp TTEEEEEEEEEETTTCCEEECCC----CSSCCBSCEEEEET----TEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred CCCccceEEEEECCCCeEEECCC----CCCcccceEEEEEC----CEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 77677899999999999999863 35678889998886 78999999864 23789999999999
Q ss_pred Ccccc
Q 010115 390 ESSMG 394 (518)
Q Consensus 390 ~w~~~ 394 (518)
+|...
T Consensus 289 ~W~~~ 293 (318)
T 2woz_A 289 EWAGM 293 (318)
T ss_dssp EEEEE
T ss_pred Eehhh
Confidence 99865
No 14
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=7.9e-40 Score=331.87 Aligned_cols=276 Identities=19% Similarity=0.256 Sum_probs=219.5
Q ss_pred ccCCCCCceEeccCCCCCCcceecccccccccCCCCCCCCeEEeccCCCCC-CCccceEEEEECCEEEEEcCc-C----C
Q 010115 36 NSNPNSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKP-IPRFNHAAAVIGNKMIVVGGE-S----G 109 (518)
Q Consensus 36 ~~~~~~~~i~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~~~~p-~~R~~~~~~~~~~~lyv~GG~-~----~ 109 (518)
+++..++.||++||...+ +++.++.. ..+++|+.++ ++| .+|.+|++++++++|||+||. . .
T Consensus 14 ~~~~~~~~iyv~GG~~~~-------~~~~~d~~--~~~~~W~~~~---~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~ 81 (357)
T 2uvk_A 14 TGAIDNDTVYIGLGSAGT-------AWYKLDTQ--AKDKKWTALA---AFPGGPRDQATSAFIDGNLYVFGGIGKNSEGL 81 (357)
T ss_dssp EEEEETTEEEEECGGGTT-------CEEEEETT--SSSCCEEECC---CCTTCCCBSCEEEEETTEEEEECCEEECTTSC
T ss_pred EEEEECCEEEEEeCcCCC-------eEEEEccc--cCCCCeeECC---CCCCCcCccceEEEECCEEEEEcCCCCCCCcc
Confidence 444558889999995532 22333220 1368999997 788 899999999999999999998 2 2
Q ss_pred CCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCC--------------------
Q 010115 110 NGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG-------------------- 169 (518)
Q Consensus 110 ~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~-------------------- 169 (518)
...++++++||+.+++|++++++ ++.+|.+|++++.+++|||+||.....
T Consensus 82 ~~~~~~v~~yd~~~~~W~~~~~~----------~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (357)
T 2uvk_A 82 TQVFNDVHKYNPKTNSWVKLMSH----------APMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDK 151 (357)
T ss_dssp EEECCCEEEEETTTTEEEECSCC----------CSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ceeeccEEEEeCCCCcEEECCCC----------CCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhh
Confidence 24579999999999999999873 446788999999999999999986421
Q ss_pred -------------CCceeEEEEECCCCcEEEeeecCCCCCCCcc-eEEEEECCEEEEEcccCCCCcccCcEEEEEc--CC
Q 010115 170 -------------SDRVSVWTFDTETECWSVVEAKGDIPVARSG-HTVVRASSVLILFGGEDGKRRKLNDLHMFDL--KS 233 (518)
Q Consensus 170 -------------~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~--~t 233 (518)
...+++++||+.+++|+.+.+ +|.+|.. |++++++++|||+||.+..+...+++++||+ .+
T Consensus 152 ~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~---~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~ 228 (357)
T 2uvk_A 152 INAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGE---SPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNN 228 (357)
T ss_dssp HHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEE---CSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---
T ss_pred hhhhhccccccccCCcccEEEEeCCCCcEEECCC---CCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCC
Confidence 235789999999999999986 8876554 9999999999999999766566889999987 89
Q ss_pred CcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCC-----------------CCCCCcEEEEEcCCCeEEEeecCCCC
Q 010115 234 LTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSK-----------------SKTLNDLYSLDFETMIWTRIKIRGFH 296 (518)
Q Consensus 234 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~-----------------~~~~~~v~~yd~~~~~W~~v~~~~~~ 296 (518)
++|+.+... +.|.+|..|++++++++ |||+||.+. ...++++++||+++++|+++..+
T Consensus 229 ~~W~~~~~~-~~~~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~--- 303 (357)
T 2uvk_A 229 LKWNKLAPV-SSPDGVAGGFAGISNDS-LIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL--- 303 (357)
T ss_dssp CEEEECCCS-STTTCCBSCEEEEETTE-EEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEEC---
T ss_pred CcEEecCCC-CCCcccccceEEEECCE-EEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCC---
Confidence 999999732 23445668889999998 999999642 22346899999999999999876
Q ss_pred CCCCcceEEEEECCEEEEEcccCCCC-CcCeEEEEECCCCceEEee
Q 010115 297 PSPRAGCCGVLCGTKWYIAGGGSRKK-RHAETLIFDILKGEWSVAI 341 (518)
Q Consensus 297 p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~ 341 (518)
|.+|..|+++.++++|||+||.+... ..+++++|++++++|.++.
T Consensus 304 p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 304 SQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp SSCCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred CCCcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 88999999999999999999987644 4689999999999999875
No 15
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=4.5e-38 Score=345.47 Aligned_cols=283 Identities=16% Similarity=0.193 Sum_probs=231.5
Q ss_pred CCCCCccceEEEEECCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcc-cccccCCCCCCCCCCCccceEEEEE--CCEEE
Q 010115 84 DKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAAS-SKLYLSPSSLPLKIPACRGHSLISW--GKKVL 160 (518)
Q Consensus 84 ~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iy 160 (518)
..|.+|++++++ ++++|||+||... ..++++++||+.+++|+.++ ++.. ...+.+|.+|+++++ +++||
T Consensus 384 ~~p~rr~g~~~~-~~~~iyv~GG~~~-~~~~~v~~yd~~~~~W~~~~~~~p~------~~~p~~R~~hs~~~~~~~~~ly 455 (695)
T 2zwa_A 384 CPINRKFGDVDV-AGNDVFYMGGSNP-YRVNEILQLSIHYDKIDMKNIEVSS------SEVPVARMCHTFTTISRNNQLL 455 (695)
T ss_dssp CTTCCBSCEEEE-CSSCEEEECCBSS-SBCCCEEEEEECSSCEEEEECCCCC------SCCCCCCBSCEEEEETTTTEEE
T ss_pred CCCCCceeEEEE-ECCEEEEECCCCC-CCcCcEEEEECCCCeEEEeccCCCC------CCCCccccceEEEEEccCCEEE
Confidence 556667765544 8999999999877 77899999999999999998 4210 013557889999999 99999
Q ss_pred EEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEe
Q 010115 161 LVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPL 239 (518)
Q Consensus 161 v~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 239 (518)
|+||........+++|+||+.+++|+.+++ +|.+|.+|+++++ +++|||+||.+... ++++||+.+++|+.+
T Consensus 456 v~GG~~~~~~~~~dv~~yd~~t~~W~~~~~---~p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~W~~~ 528 (695)
T 2zwa_A 456 LIGGRKAPHQGLSDNWIFDMKTREWSMIKS---LSHTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEEIFKDV 528 (695)
T ss_dssp EECCBSSTTCBCCCCEEEETTTTEEEECCC---CSBCCBSCEEEECTTSCEEEECCBCSSC----SEEEEETTTTEEEEC
T ss_pred EEcCCCCCCCccccEEEEeCCCCcEEECCC---CCCCcccceEEEEcCCEEEEECCCCCCC----CEEEEECCCCceEEc
Confidence 999998766567899999999999999976 9999999999996 99999999998763 899999999999999
Q ss_pred ecCCCCCCCCCCcEEEEEC---CcEEEEEcCCCC--CCCCCcEEEEEcCCCe------EEEeecCCCCCCCCcceEEEEE
Q 010115 240 HCTGTGPSPRSNHVAALYD---DKNLLIFGGSSK--SKTLNDLYSLDFETMI------WTRIKIRGFHPSPRAGCCGVLC 308 (518)
Q Consensus 240 ~~~g~~p~~r~~~~~~~~~---~~~lyv~GG~~~--~~~~~~v~~yd~~~~~------W~~v~~~~~~p~~r~~~~~~~~ 308 (518)
...+.+|.+|..|++++++ ++ |||+||... ...++++++||+.+++ |+.+..+ ++.+|.+|+++++
T Consensus 529 ~~~g~~p~~r~~~~a~v~~~~~~~-iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~--p~~~R~~~~~~~~ 605 (695)
T 2zwa_A 529 TPKDEFFQNSLVSAGLEFDPVSKQ-GIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQH--PLFQRYGSQIKYI 605 (695)
T ss_dssp CCSSGGGGSCCBSCEEEEETTTTE-EEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEEC--GGGCCBSCEEEEE
T ss_pred cCCCCCCCcccceeEEEEeCCCCE-EEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCC--CCCCcccceEEEe
Confidence 8777799999999988876 55 999999854 3567999999999999 9999874 2588999999999
Q ss_pred C-CEEEEEcccCCCC---CcCeEEEEECCCCceEEeecCCCC----CCCCCCCceEEEEeeCCccEEEEEcCCCC-----
Q 010115 309 G-TKWYIAGGGSRKK---RHAETLIFDILKGEWSVAITSPSS----SVTSNKGFTLVLVQHKEKDFLVAFGGIKK----- 375 (518)
Q Consensus 309 ~-~~iyv~GG~~~~~---~~~~v~~yd~~~~~W~~~~~~~~~----~~~~r~~~s~~~~~~~~~~~l~v~GG~~~----- 375 (518)
+ ++|||+||.+... ..+++++||+.+++|+.+.. |.. ....+.+|+++.+. .++|||+||...
T Consensus 606 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~-p~~~~~~~~p~~~gh~~~~~~---~g~i~v~GGg~~cfsfG 681 (695)
T 2zwa_A 606 TPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPI-SRRIWEDHSLMLAGFSLVSTS---MGTIHIIGGGATCYGFG 681 (695)
T ss_dssp ETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEEECCC-CHHHHHHSCCCCSSCEEECC------CEEEECCEEECTTSC
T ss_pred CCCEEEEECCccCCCCCCCCCeEEEEECCCCeEEEeec-cccccCCCCccceeeeEEEeC---CCEEEEEeCCccCcCcc
Confidence 8 9999999987543 57899999999999996542 211 12356788888776 237999999632
Q ss_pred CCCCcEEEEEccc
Q 010115 376 EPSNQVEVLSIEK 388 (518)
Q Consensus 376 ~~~~~v~~yd~~~ 388 (518)
...|++|.+|+..
T Consensus 682 t~~n~i~~ldl~~ 694 (695)
T 2zwa_A 682 SVTNVGLKLIAIA 694 (695)
T ss_dssp EEECCCEEEEECC
T ss_pred ccccceEEEEEEc
Confidence 2256888888764
No 16
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=4.9e-35 Score=321.32 Aligned_cols=268 Identities=20% Similarity=0.202 Sum_probs=216.0
Q ss_pred CCCceEeccCCCCCCcceecccccccccCCCCCCCCeEEec-c--CCCCCCCccceEEEEE--CCEEEEEcCcCCCC-CC
Q 010115 40 NSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLS-I--AGDKPIPRFNHAAAVI--GNKMIVVGGESGNG-LL 113 (518)
Q Consensus 40 ~~~~i~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~-~--~~~~p~~R~~~~~~~~--~~~lyv~GG~~~~~-~~ 113 (518)
.++.||++||... . ..++++.++. .+++|..++ . .+.+|.+|.+|+++++ +++|||+||..... .+
T Consensus 396 ~~~~iyv~GG~~~--~--~~~~v~~yd~----~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~ 467 (695)
T 2zwa_A 396 AGNDVFYMGGSNP--Y--RVNEILQLSI----HYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGL 467 (695)
T ss_dssp CSSCEEEECCBSS--S--BCCCEEEEEE----CSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBC
T ss_pred ECCEEEEECCCCC--C--CcCcEEEEEC----CCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCcc
Confidence 5788999999654 2 2233333333 889999997 3 3568999999999999 99999999987654 68
Q ss_pred CcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecC
Q 010115 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 192 (518)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~ 192 (518)
+++|+||+.+++|+.+++ + +.+|.+|+++++ +++|||+||..... ++++||+.+++|+.+++.+
T Consensus 468 ~dv~~yd~~t~~W~~~~~----------~-p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~W~~~~~~g 532 (695)
T 2zwa_A 468 SDNWIFDMKTREWSMIKS----------L-SHTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEEIFKDVTPKD 532 (695)
T ss_dssp CCCEEEETTTTEEEECCC----------C-SBCCBSCEEEECTTSCEEEECCBCSSC----SEEEEETTTTEEEECCCSS
T ss_pred ccEEEEeCCCCcEEECCC----------C-CCCcccceEEEEcCCEEEEECCCCCCC----CEEEEECCCCceEEccCCC
Confidence 999999999999999976 2 346788999997 99999999997644 8999999999999999877
Q ss_pred CCCCCCcceEEEEEC---CEEEEEcccCCCC-cccCcEEEEEcCCCc------EEEeecCCCC-CCCCCCcEEEEEC-Cc
Q 010115 193 DIPVARSGHTVVRAS---SVLILFGGEDGKR-RKLNDLHMFDLKSLT------WLPLHCTGTG-PSPRSNHVAALYD-DK 260 (518)
Q Consensus 193 ~~p~~r~~~~~~~~~---~~iyv~GG~~~~~-~~~~~~~~yd~~t~~------W~~~~~~g~~-p~~r~~~~~~~~~-~~ 260 (518)
++|.+|.+|++++++ ++|||+||....+ ..++++++||+.+++ |+.+. .+ +.+|..|++++++ ++
T Consensus 533 ~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~---~~p~~~R~~~~~~~~~~~~ 609 (695)
T 2zwa_A 533 EFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKL---QHPLFQRYGSQIKYITPRK 609 (695)
T ss_dssp GGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEE---ECGGGCCBSCEEEEEETTE
T ss_pred CCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcC---CCCCCCcccceEEEeCCCE
Confidence 799999999988877 8999999996553 568999999999999 99987 44 5899999999999 66
Q ss_pred EEEEEcCCCCCC---CCCcEEEEEcCCCeEEEeecCCC----CCCCCcceEEEEECC-EEEEEcccCC----CCCcCeEE
Q 010115 261 NLLIFGGSSKSK---TLNDLYSLDFETMIWTRIKIRGF----HPSPRAGCCGVLCGT-KWYIAGGGSR----KKRHAETL 328 (518)
Q Consensus 261 ~lyv~GG~~~~~---~~~~v~~yd~~~~~W~~v~~~~~----~p~~r~~~~~~~~~~-~iyv~GG~~~----~~~~~~v~ 328 (518)
|||+||.+... ..+++++||+++++|+.+..... +++.+.+|+++.+++ +|||+||... ....+++|
T Consensus 610 -iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~~cfsfGt~~n~i~ 688 (695)
T 2zwa_A 610 -LLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGATCYGFGSVTNVGL 688 (695)
T ss_dssp -EEEECCBCSSCCCCTTTSEEEEETTTTEEEECCCCHHHHHHSCCCCSSCEEECC---CEEEECCEEECTTSCEEECCCE
T ss_pred -EEEECCccCCCCCCCCCeEEEEECCCCeEEEeeccccccCCCCccceeeeEEEeCCCEEEEEeCCccCcCccccccceE
Confidence 99999986543 58899999999999996543211 123577888888766 9999999642 23456888
Q ss_pred EEECCC
Q 010115 329 IFDILK 334 (518)
Q Consensus 329 ~yd~~~ 334 (518)
.+|+..
T Consensus 689 ~ldl~~ 694 (695)
T 2zwa_A 689 KLIAIA 694 (695)
T ss_dssp EEEECC
T ss_pred EEEEEc
Confidence 888754
No 17
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=100.00 E-value=1.2e-34 Score=317.31 Aligned_cols=339 Identities=13% Similarity=0.057 Sum_probs=244.3
Q ss_pred eeeeccccccccCCCCCCCC----ccCCC-CCceEeccCCCCCCc-----ceecccccccccCCCCCCCCeEEeccCCCC
Q 010115 16 KVQLSDSAQAIRSPIRPPKR----NSNPN-SECVAPSSNHADDRD-----CECTIAGPEVSNGTSGNSENWMVLSIAGDK 85 (518)
Q Consensus 16 ~~~~~d~~~~~~~p~~~~~r----~~~~~-~~~i~~~GG~~~~~~-----~~~~~~~~~~~~~~~~~~~~W~~l~~~~~~ 85 (518)
.++.||+..+.|.++.+.++ .++.. +.+||++||...+.. .......|++ .+++|+.++ .+
T Consensus 167 ~~~~~dp~~~~W~~~~~~P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~------~t~~w~~~~---~~ 237 (656)
T 1k3i_A 167 SYTAPQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDP------STGIVSDRT---VT 237 (656)
T ss_dssp CCCCCCTTSCEEEEEEECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECT------TTCCBCCCE---EE
T ss_pred ccccCCCCCCeeeeeccCCCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeC------CCCcEEeCc---cc
Confidence 47789999999986544333 22222 677999999544310 0112223444 899999997 56
Q ss_pred CCCccceE--EEE-ECCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEE
Q 010115 86 PIPRFNHA--AAV-IGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLL 161 (518)
Q Consensus 86 p~~R~~~~--~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv 161 (518)
|.+|..++ +++ .+++||++||... .++++||+.+++|++++++ +.+|..|+++++ +++||+
T Consensus 238 ~~~~~~~~~~~~~~~~g~lyv~GG~~~----~~v~~yd~~t~~W~~~~~~-----------~~~R~~~s~~~~~dg~iyv 302 (656)
T 1k3i_A 238 VTKHDMFCPGISMDGNGQIVVTGGNDA----KKTSLYDSSSDSWIPGPDM-----------QVARGYQSSATMSDGRVFT 302 (656)
T ss_dssp ECSCCCSSCEEEECTTSCEEEECSSST----TCEEEEEGGGTEEEECCCC-----------SSCCSSCEEEECTTSCEEE
T ss_pred CCCCCCccccccCCCCCCEEEeCCCCC----CceEEecCcCCceeECCCC-----------CccccccceEEecCCeEEE
Confidence 77776554 333 5899999999764 3799999999999999763 336788999998 999999
Q ss_pred EcCcCCCCCCceeEEEEECCCCcEEEeeecC--CCCCCCcceEEEEECCEEEEEcccCCCC---cccCcEEEEEcCCCcE
Q 010115 162 VGGKTDSGSDRVSVWTFDTETECWSVVEAKG--DIPVARSGHTVVRASSVLILFGGEDGKR---RKLNDLHMFDLKSLTW 236 (518)
Q Consensus 162 ~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~~yd~~t~~W 236 (518)
+||........+++++||+.+++|+.++..+ +++..|.. +++..++++|++||.++.. ...++++.||+.+++|
T Consensus 303 ~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~-~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w 381 (656)
T 1k3i_A 303 IGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ-GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD 381 (656)
T ss_dssp ECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT-GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE
T ss_pred EeCcccCCcccccceEeCCCCCcceeCCCcccccccccccc-ceeecCCceEEEECCCCcEEEecCccceeeeecCCcce
Confidence 9996554556778999999999999984221 25555553 5556789999999987531 2367899999999998
Q ss_pred EEeecCCCC----CCCCCCcEEEE---ECCcEEEEEcCCCC---CCCCC---cEEEEEcCCCeEEEeecCCCCCCCCcce
Q 010115 237 LPLHCTGTG----PSPRSNHVAAL---YDDKNLLIFGGSSK---SKTLN---DLYSLDFETMIWTRIKIRGFHPSPRAGC 303 (518)
Q Consensus 237 ~~~~~~g~~----p~~r~~~~~~~---~~~~~lyv~GG~~~---~~~~~---~v~~yd~~~~~W~~v~~~~~~p~~r~~~ 303 (518)
......... +.++..+++++ ++++ |||+||... ...++ .+++||+++++|+.+. .+..|.+|..|
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~-i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~mp~~R~~~ 459 (656)
T 1k3i_A 382 VKSAGKRQSNRGVAPDAMCGNAVMYDAVKGK-ILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA-SNGLYFARTFH 459 (656)
T ss_dssp EEEEEECEETTEECCCCBTCEEEEEETTTTE-EEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC-TTCCSSCCBSC
T ss_pred eecCCccccccccCCCCCCCceEeccCCCCe-EEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc-cCCCCCCcccC
Confidence 765421111 22344555554 3566 999999642 33445 7899999999999987 12348999999
Q ss_pred EEEEE-CCEEEEEcccCC------CCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCC
Q 010115 304 CGVLC-GTKWYIAGGGSR------KKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE 376 (518)
Q Consensus 304 ~~~~~-~~~iyv~GG~~~------~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~ 376 (518)
+++++ +++|||+||... .....++++||+.+++|+.+.. ++.+|.+|+++++.. +++||++||....
T Consensus 460 ~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~----~~~~R~~hs~a~ll~--dg~v~v~GG~~~~ 533 (656)
T 1k3i_A 460 TSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNP----NSIVRVYHSISLLLP--DGRVFNGGGGLCG 533 (656)
T ss_dssp EEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCC----CSSCCCTTEEEEECT--TSCEEEEECCCCT
T ss_pred CeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCC----CCCccccccHhhcCC--CcEEEecCCCCCC
Confidence 99988 999999999753 2456789999999999999763 357899999887742 2569999996322
Q ss_pred C----CCcEEEEEcc
Q 010115 377 P----SNQVEVLSIE 387 (518)
Q Consensus 377 ~----~~~v~~yd~~ 387 (518)
. .-++++|.|.
T Consensus 534 ~~~~~~~~~e~~~Pp 548 (656)
T 1k3i_A 534 DCTTNHFDAQIFTPN 548 (656)
T ss_dssp TCSCCCCEEEEEECG
T ss_pred CCCCCeeEEEEEeCh
Confidence 1 3456777664
No 18
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=100.00 E-value=1.2e-33 Score=309.55 Aligned_cols=314 Identities=11% Similarity=0.034 Sum_probs=232.4
Q ss_pred CCCCCCeEEeccCCCCCCCccceEEEEE--CCEEEEEcCcCCCC------CCCcEEEEEcCCCcEEEcccccccCCCCCC
Q 010115 70 SGNSENWMVLSIAGDKPIPRFNHAAAVI--GNKMIVVGGESGNG------LLDDVQVLNFDRFSWTAASSKLYLSPSSLP 141 (518)
Q Consensus 70 ~~~~~~W~~l~~~~~~p~~R~~~~~~~~--~~~lyv~GG~~~~~------~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~ 141 (518)
.+.+++|..++ ++ ||..++++++ +++||++||..... ..+++++||+.+++|+.++.+
T Consensus 172 dp~~~~W~~~~---~~--P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~--------- 237 (656)
T 1k3i_A 172 QPGLGRWGPTI---DL--PIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT--------- 237 (656)
T ss_dssp CTTSCEEEEEE---EC--SSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE---------
T ss_pred CCCCCeeeeec---cC--CCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCccc---------
Confidence 35889999986 34 4566677777 89999999975432 245799999999999998873
Q ss_pred CCCCCc-cceEEEE-ECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCC
Q 010115 142 LKIPAC-RGHSLIS-WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDG 218 (518)
Q Consensus 142 ~~~~~r-~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~ 218 (518)
+.++. ..+++++ .+++||++||.... ++++||+.+++|+.+++ ||.+|..|+++++ +++||++||...
T Consensus 238 -~~~~~~~~~~~~~~~~g~lyv~GG~~~~-----~v~~yd~~t~~W~~~~~---~~~~R~~~s~~~~~dg~iyv~GG~~~ 308 (656)
T 1k3i_A 238 -VTKHDMFCPGISMDGNGQIVVTGGNDAK-----KTSLYDSSSDSWIPGPD---MQVARGYQSSATMSDGRVFTIGGSWS 308 (656)
T ss_dssp -ECSCCCSSCEEEECTTSCEEEECSSSTT-----CEEEEEGGGTEEEECCC---CSSCCSSCEEEECTTSCEEEECCCCC
T ss_pred -CCCCCCccccccCCCCCCEEEeCCCCCC-----ceEEecCcCCceeECCC---CCccccccceEEecCCeEEEEeCccc
Confidence 33322 2233443 58999999998642 69999999999999975 9999999999998 999999999644
Q ss_pred CCcccCcEEEEEcCCCcEEEeecCC--CCCCCCCCcEEEEECCcEEEEEcCCCCC----CCCCcEEEEEcCCCeEEEeec
Q 010115 219 KRRKLNDLHMFDLKSLTWLPLHCTG--TGPSPRSNHVAALYDDKNLLIFGGSSKS----KTLNDLYSLDFETMIWTRIKI 292 (518)
Q Consensus 219 ~~~~~~~~~~yd~~t~~W~~~~~~g--~~p~~r~~~~~~~~~~~~lyv~GG~~~~----~~~~~v~~yd~~~~~W~~v~~ 292 (518)
....++++++||+.+++|+.++..+ +++..|.. +++..+++ +|++||.++. ...++++.||++++.|.....
T Consensus 309 ~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~-~~~~~~~~-iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~ 386 (656)
T 1k3i_A 309 GGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ-GLYRSDNH-AWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAG 386 (656)
T ss_dssp SSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT-GGGTTTCS-CCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEE
T ss_pred CCcccccceEeCCCCCcceeCCCcccccccccccc-ceeecCCc-eEEEECCCCcEEEecCccceeeeecCCcceeecCC
Confidence 4457899999999999999984321 45555543 44556777 9999998653 346789999999999876543
Q ss_pred CCCC----CCCCcceEEEE---ECCEEEEEcccCC---CCCcC---eEEEEECCCCceEEeecCCCCCCCCCCCceEEEE
Q 010115 293 RGFH----PSPRAGCCGVL---CGTKWYIAGGGSR---KKRHA---ETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLV 359 (518)
Q Consensus 293 ~~~~----p~~r~~~~~~~---~~~~iyv~GG~~~---~~~~~---~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~ 359 (518)
.... +.++..+++++ .+++|||+||... ...++ .+++||+.+++|+.+. ...++.+|..|+++++
T Consensus 387 ~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~mp~~R~~~~~~~l 464 (656)
T 1k3i_A 387 KRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA--SNGLYFARTFHTSVVL 464 (656)
T ss_dssp ECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC--TTCCSSCCBSCEEEEC
T ss_pred ccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc--cCCCCCCcccCCeEEC
Confidence 2111 11344455554 4899999999643 22334 7899999999999875 2345678889998887
Q ss_pred eeCCccEEEEEcCCCC-------CCCCcEEEEEcccCCcccc--------ccCCC-CCCCCceEeecCCC
Q 010115 360 QHKEKDFLVAFGGIKK-------EPSNQVEVLSIEKNESSMG--------RRSTP-NAKGPGQLLFEKRS 413 (518)
Q Consensus 360 ~~~~~~~l~v~GG~~~-------~~~~~v~~yd~~~~~w~~~--------~~~~~-~~~~~~~~vfgG~~ 413 (518)
. +++|||+||.+. ...+++++||+.+++|... ++.++ ...+.+++++||..
T Consensus 465 ~---~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~ 531 (656)
T 1k3i_A 465 P---DGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGL 531 (656)
T ss_dssp T---TSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCC
T ss_pred C---CCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCCC
Confidence 3 267999999752 2378999999999999653 23222 22477899999963
No 19
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.34 E-value=0.0011 Score=65.15 Aligned_cols=250 Identities=9% Similarity=-0.001 Sum_probs=141.3
Q ss_pred CCccceEEEEECCEEEEEcCcCCCCCCCcEEEEEcCCCcEE-EcccccccCCCCCCCCCCCccceEEEE-ECCEEEEEcC
Q 010115 87 IPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWT-AASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGG 164 (518)
Q Consensus 87 ~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG 164 (518)
.....+.++..++++|+.... .+.+.++|+.+.+-. .++. . ..-+.++. .++++|+...
T Consensus 42 lg~~~~~i~~~~~~lyv~~~~-----~~~v~viD~~t~~~~~~i~~----------~----~~p~~i~~~~~g~lyv~~~ 102 (328)
T 3dsm_A 42 LGDVAQSMVIRDGIGWIVVNN-----SHVIFAIDINTFKEVGRITG----------F----TSPRYIHFLSDEKAYVTQI 102 (328)
T ss_dssp CBSCEEEEEEETTEEEEEEGG-----GTEEEEEETTTCCEEEEEEC----------C----SSEEEEEEEETTEEEEEEB
T ss_pred cCccceEEEEECCEEEEEEcC-----CCEEEEEECcccEEEEEcCC----------C----CCCcEEEEeCCCeEEEEEC
Confidence 334456677789999998753 257899999987653 3321 1 11233444 6789999874
Q ss_pred cCCCCCCceeEEEEECCCCcEEEeeecCCCC-CCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCC
Q 010115 165 KTDSGSDRVSVWTFDTETECWSVVEAKGDIP-VARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTG 243 (518)
Q Consensus 165 ~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g 243 (518)
. ...+.++|+.+.+-...-+.+... ....-+.++..++++|+..-. ..+.+.++|+.+.+....-..+
T Consensus 103 ~------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~-----~~~~v~viD~~t~~~~~~i~~g 171 (328)
T 3dsm_A 103 W------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWS-----YQNRILKIDTETDKVVDELTIG 171 (328)
T ss_dssp S------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECT-----TCCEEEEEETTTTEEEEEEECS
T ss_pred C------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCC-----CCCEEEEEECCCCeEEEEEEcC
Confidence 3 236999999998755332212100 000223445578999998420 1356999999998765443222
Q ss_pred CCCCCCCCcEEEEECCcEEEEEcCCCCCCC-----CCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEc
Q 010115 244 TGPSPRSNHVAALYDDKNLLIFGGSSKSKT-----LNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAG 316 (518)
Q Consensus 244 ~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~-----~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~--~~~iyv~G 316 (518)
..| +.++...+..+|+......... .+.++++|+++.+....-.. +....-..++.. ++.+|+..
T Consensus 172 ~~p-----~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~---~~g~~p~~la~~~d~~~lyv~~ 243 (328)
T 3dsm_A 172 IQP-----TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF---KLGDWPSEVQLNGTRDTLYWIN 243 (328)
T ss_dssp SCB-----CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC---CTTCCCEEEEECTTSCEEEEES
T ss_pred CCc-----cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEec---CCCCCceeEEEecCCCEEEEEc
Confidence 222 2334444444777653221111 36799999998876643332 222222344444 56788875
Q ss_pred ccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcc
Q 010115 317 GGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIE 387 (518)
Q Consensus 317 G~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~ 387 (518)
+ .++++|+.+.+.......+ ........+++. ++.+.||+....+-...+.|.+||++
T Consensus 244 ~--------~v~~~d~~t~~~~~~~~~~----~~~~~p~gi~vd-p~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 244 N--------DIWRMPVEADRVPVRPFLE----FRDTKYYGLTVN-PNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp S--------SEEEEETTCSSCCSSCSBC----CCSSCEEEEEEC-TTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred c--------EEEEEECCCCceeeeeeec----CCCCceEEEEEc-CCCCeEEEEcccccccCCEEEEECCC
Confidence 4 5999999887753211111 001122334443 23466888763222224589999987
No 20
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.04 E-value=0.0029 Score=59.02 Aligned_cols=163 Identities=17% Similarity=0.027 Sum_probs=108.0
Q ss_pred cceEEEEECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEE
Q 010115 148 RGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLH 227 (518)
Q Consensus 148 ~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 227 (518)
+-+++...++.+|+..|..+ .+.+.++|+++++-..... +|..-++.+++..+++||+.... .+.++
T Consensus 22 ftqGL~~~~~~LyestG~~g----~S~v~~vD~~tgkv~~~~~---l~~~~fgeGi~~~~~~ly~ltw~------~~~v~ 88 (243)
T 3mbr_X 22 FTEGLFYLRGHLYESTGETG----RSSVRKVDLETGRILQRAE---VPPPYFGAGIVAWRDRLIQLTWR------NHEGF 88 (243)
T ss_dssp CEEEEEEETTEEEEEECCTT----SCEEEEEETTTCCEEEEEE---CCTTCCEEEEEEETTEEEEEESS------SSEEE
T ss_pred ccccEEEECCEEEEECCCCC----CceEEEEECCCCCEEEEEe---CCCCcceeEEEEeCCEEEEEEee------CCEEE
Confidence 44677778999999999754 2468999999998766554 77777888889999999998543 35699
Q ss_pred EEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCc-ceEEE
Q 010115 228 MFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRA-GCCGV 306 (518)
Q Consensus 228 ~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~-~~~~~ 306 (518)
+||+++.+-..- .+.+..+.+++.- ++.||+.-| .+.++.+|+++.+-..--..+..+.+.. --.+.
T Consensus 89 v~D~~tl~~~~t-----i~~~~~Gwglt~d-g~~L~vSdg------s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe 156 (243)
T 3mbr_X 89 VYDLATLTPRAR-----FRYPGEGWALTSD-DSHLYMSDG------TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELE 156 (243)
T ss_dssp EEETTTTEEEEE-----EECSSCCCEEEEC-SSCEEEECS------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EEECCcCcEEEE-----EeCCCCceEEeeC-CCEEEEECC------CCeEEEEeCCCCeEEEEEEEccCCcccccceeeE
Confidence 999988664432 2223345556544 444888755 2479999999865433222111122211 12344
Q ss_pred EECCEEEEEcccCCCCCcCeEEEEECCCCceEEe
Q 010115 307 LCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 340 (518)
Q Consensus 307 ~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 340 (518)
..+++||+--- ..+++.+.|+.+++-...
T Consensus 157 ~~~G~lyanvw-----~s~~I~vIDp~tG~V~~~ 185 (243)
T 3mbr_X 157 WVNGELLANVW-----LTSRIARIDPASGKVVAW 185 (243)
T ss_dssp EETTEEEEEET-----TTTEEEEECTTTCBEEEE
T ss_pred EeCCEEEEEEC-----CCCeEEEEECCCCCEEEE
Confidence 55899886432 235799999999875443
No 21
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.96 E-value=0.017 Score=56.45 Aligned_cols=233 Identities=9% Similarity=-0.082 Sum_probs=132.8
Q ss_pred CCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecC
Q 010115 113 LDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 192 (518)
Q Consensus 113 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~ 192 (518)
.+.+..||+.+.++...-..... ........+.++..++++|+..... +.+.++|+.+.+-...-+.
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n------~~~lg~~~~~i~~~~~~lyv~~~~~------~~v~viD~~t~~~~~~i~~- 82 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRAN------GFKLGDVAQSMVIRDGIGWIVVNNS------HVIFAIDINTFKEVGRITG- 82 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHH------SSCCBSCEEEEEEETTEEEEEEGGG------TEEEEEETTTCCEEEEEEC-
T ss_pred CceEEEEECCCCEEhhhhHhhhc------CcccCccceEEEEECCEEEEEEcCC------CEEEEEECcccEEEEEcCC-
Confidence 46789999999887653211000 0011223456777899999987532 3699999998876332221
Q ss_pred CCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCC-CCCCcEEEEECCcEEEEEcCCCC
Q 010115 193 DIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPS-PRSNHVAALYDDKNLLIFGGSSK 270 (518)
Q Consensus 193 ~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~~lyv~GG~~~ 270 (518)
. ..-+.++. .++++|+.... .+.+.++|+.+.+-...-..+.... ...-..++. .++.+|+..-
T Consensus 83 -~---~~p~~i~~~~~g~lyv~~~~------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~--- 148 (328)
T 3dsm_A 83 -F---TSPRYIHFLSDEKAYVTQIW------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCW--- 148 (328)
T ss_dssp -C---SSEEEEEEEETTEEEEEEBS------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEEC---
T ss_pred -C---CCCcEEEEeCCCeEEEEECC------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcC---
Confidence 2 22234444 67899998642 2569999999887653221122000 001123444 4444888742
Q ss_pred CCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCCC-----cCeEEEEECCCCceEEeecCC
Q 010115 271 SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKR-----HAETLIFDILKGEWSVAITSP 344 (518)
Q Consensus 271 ~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~-----~~~v~~yd~~~~~W~~~~~~~ 344 (518)
...+.|.++|+++++....-..+..| +.++.. ++++|+..-...... .+.++++|+.+.+.......+
T Consensus 149 -~~~~~v~viD~~t~~~~~~i~~g~~p-----~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~ 222 (328)
T 3dsm_A 149 -SYQNRILKIDTETDKVVDELTIGIQP-----TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFK 222 (328)
T ss_dssp -TTCCEEEEEETTTTEEEEEEECSSCB-----CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECC
T ss_pred -CCCCEEEEEECCCCeEEEEEEcCCCc-----cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecC
Confidence 01347999999988765543333222 222332 688888763321111 367999999998766432211
Q ss_pred CCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCCc
Q 010115 345 SSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 391 (518)
Q Consensus 345 ~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~w 391 (518)
. .. ....+++. .+...||+..+ .++++|+.+.+.
T Consensus 223 ~----g~-~p~~la~~-~d~~~lyv~~~-------~v~~~d~~t~~~ 256 (328)
T 3dsm_A 223 L----GD-WPSEVQLN-GTRDTLYWINN-------DIWRMPVEADRV 256 (328)
T ss_dssp T----TC-CCEEEEEC-TTSCEEEEESS-------SEEEEETTCSSC
T ss_pred C----CC-CceeEEEe-cCCCEEEEEcc-------EEEEEECCCCce
Confidence 1 11 12233332 34567888654 799999987764
No 22
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.78 E-value=0.0086 Score=56.40 Aligned_cols=163 Identities=12% Similarity=-0.001 Sum_probs=104.2
Q ss_pred cceEEEEECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEE
Q 010115 148 RGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLH 227 (518)
Q Consensus 148 ~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 227 (518)
+-.++...++.||+..|..+ .+.+.++|+++++-....+ ++..-++.+++..+++||+.... .+.++
T Consensus 44 ftqGL~~~~~~LyestG~~g----~S~v~~vD~~Tgkv~~~~~---l~~~~FgeGit~~g~~ly~ltw~------~~~v~ 110 (262)
T 3nol_A 44 FTEGFFYRNGYFYESTGLNG----RSSIRKVDIESGKTLQQIE---LGKRYFGEGISDWKDKIVGLTWK------NGLGF 110 (262)
T ss_dssp EEEEEEEETTEEEEEEEETT----EEEEEEECTTTCCEEEEEE---CCTTCCEEEEEEETTEEEEEESS------SSEEE
T ss_pred ccceEEEECCEEEEECCCCC----CceEEEEECCCCcEEEEEe---cCCccceeEEEEeCCEEEEEEee------CCEEE
Confidence 34566666899999998753 3468999999998655544 66666677788899999998543 35699
Q ss_pred EEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEE-EeecCCCCCCCCcc-eEE
Q 010115 228 MFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWT-RIKIRGFHPSPRAG-CCG 305 (518)
Q Consensus 228 ~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~-~v~~~~~~p~~r~~-~~~ 305 (518)
+||+++.+-..- .+.+-.+.+.+. +++.||+.-| .+.++.+|+++.+-. .+... ....+... -.+
T Consensus 111 v~D~~t~~~~~t-----i~~~~eG~glt~-dg~~L~~SdG------s~~i~~iDp~T~~v~~~I~V~-~~g~~~~~lNEL 177 (262)
T 3nol_A 111 VWNIRNLRQVRS-----FNYDGEGWGLTH-NDQYLIMSDG------TPVLRFLDPESLTPVRTITVT-AHGEELPELNEL 177 (262)
T ss_dssp EEETTTCCEEEE-----EECSSCCCCEEE-CSSCEEECCS------SSEEEEECTTTCSEEEEEECE-ETTEECCCEEEE
T ss_pred EEECccCcEEEE-----EECCCCceEEec-CCCEEEEECC------CCeEEEEcCCCCeEEEEEEec-cCCcccccccee
Confidence 999988765432 122224445554 4454888654 257999999986533 33321 11111111 123
Q ss_pred EEECCEEEEEcccCCCCCcCeEEEEECCCCceEEee
Q 010115 306 VLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAI 341 (518)
Q Consensus 306 ~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 341 (518)
...+++||+--- ..++|.+.|+++++-...-
T Consensus 178 e~~~G~lyan~w-----~~~~I~vIDp~tG~V~~~I 208 (262)
T 3nol_A 178 EWVDGEIFANVW-----QTNKIVRIDPETGKVTGII 208 (262)
T ss_dssp EEETTEEEEEET-----TSSEEEEECTTTCBEEEEE
T ss_pred EEECCEEEEEEc-----cCCeEEEEECCCCcEEEEE
Confidence 445889986421 2367999999998765543
No 23
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.67 E-value=0.054 Score=53.59 Aligned_cols=233 Identities=15% Similarity=0.179 Sum_probs=127.6
Q ss_pred EEEEECCEEEEEcCcCCCCCCCcEEEEEcCCC--cEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCC
Q 010115 93 AAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGS 170 (518)
Q Consensus 93 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~ 170 (518)
+.++.++.||+.... ..++.||..+. .|+.-........ .........+.+..++.||+....
T Consensus 48 ~p~v~~~~v~~~~~~------g~v~a~d~~tG~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~v~v~~~~----- 112 (376)
T 3q7m_A 48 HPALADNVVYAADRA------GLVKALNADDGKEIWSVSLAEKDGWF----SKEPALLSGGVTVSGGHVYIGSEK----- 112 (376)
T ss_dssp CCEEETTEEEEECTT------SEEEEEETTTCCEEEEEECCC---CC----SCCCCCEEEEEEEETTEEEEEETT-----
T ss_pred ccEEECCEEEEEcCC------CeEEEEEccCCceeeeecCccccccc----cccCcccccCceEeCCEEEEEcCC-----
Confidence 556678999987642 36899999765 6876543110000 000122234456678899986432
Q ss_pred CceeEEEEECCCCc--EEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCc--EEEeecCCCCC
Q 010115 171 DRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGP 246 (518)
Q Consensus 171 ~~~~v~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p 246 (518)
..++.+|.++++ |+.... .. ...+.+..++.+|+... -..++.||+.+.+ |+..... ...
T Consensus 113 --g~l~a~d~~tG~~~W~~~~~-----~~-~~~~p~~~~~~v~v~~~-------~g~l~~~d~~tG~~~W~~~~~~-~~~ 176 (376)
T 3q7m_A 113 --AQVYALNTSDGTVAWQTKVA-----GE-ALSRPVVSDGLVLIHTS-------NGQLQALNEADGAVKWTVNLDM-PSL 176 (376)
T ss_dssp --SEEEEEETTTCCEEEEEECS-----SC-CCSCCEEETTEEEEECT-------TSEEEEEETTTCCEEEEEECCC----
T ss_pred --CEEEEEECCCCCEEEEEeCC-----Cc-eEcCCEEECCEEEEEcC-------CCeEEEEECCCCcEEEEEeCCC-Cce
Confidence 369999998875 766432 11 12233456888887532 2368999997765 8765311 111
Q ss_pred CCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC--eEEEeecCCCCCCCC--------cceEEEEECCEEEEEc
Q 010115 247 SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM--IWTRIKIRGFHPSPR--------AGCCGVLCGTKWYIAG 316 (518)
Q Consensus 247 ~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~v~~~~~~p~~r--------~~~~~~~~~~~iyv~G 316 (518)
..+...+.++.++. +|+ |..+ ..++.||+++. .|+.-... |... .....+..++.+|+.+
T Consensus 177 ~~~~~~~~~~~~~~-v~~-g~~~-----g~l~~~d~~tG~~~w~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~v~~~~ 246 (376)
T 3q7m_A 177 SLRGESAPTTAFGA-AVV-GGDN-----GRVSAVLMEQGQMIWQQRISQ---ATGSTEIDRLSDVDTTPVVVNGVVFALA 246 (376)
T ss_dssp --CCCCCCEEETTE-EEE-CCTT-----TEEEEEETTTCCEEEEEECCC--------------CCCCCCEEETTEEEEEC
T ss_pred eecCCCCcEEECCE-EEE-EcCC-----CEEEEEECCCCcEEEEEeccc---CCCCcccccccccCCCcEEECCEEEEEe
Confidence 11112233344444 554 4332 35999998754 57654322 1111 1223345588888865
Q ss_pred ccCCCCCcCeEEEEECCCC--ceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 317 GGSRKKRHAETLIFDILKG--EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 317 G~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
. . ..++++|+.++ .|+.-. . ......+. .+.||+.... ..+.++|+.+.+
T Consensus 247 ~-~-----g~l~~~d~~tG~~~w~~~~----~------~~~~~~~~---~~~l~~~~~~-----g~l~~~d~~tG~ 298 (376)
T 3q7m_A 247 Y-N-----GNLTALDLRSGQIMWKREL----G------SVNDFIVD---GNRIYLVDQN-----DRVMALTIDGGV 298 (376)
T ss_dssp T-T-----SCEEEEETTTCCEEEEECC----C------CEEEEEEE---TTEEEEEETT-----CCEEEEETTTCC
T ss_pred c-C-----cEEEEEECCCCcEEeeccC----C------CCCCceEE---CCEEEEEcCC-----CeEEEEECCCCc
Confidence 2 1 35899999876 476521 1 11222232 3567765432 268999988765
No 24
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.64 E-value=0.02 Score=53.32 Aligned_cols=162 Identities=14% Similarity=0.179 Sum_probs=106.0
Q ss_pred ccceEEEEECCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCC
Q 010115 89 RFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDS 168 (518)
Q Consensus 89 R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~ 168 (518)
-+-+++...++.||+-.|..+ .+.+.++|+.+.+=..... + ....++.+++..+++||+.....
T Consensus 21 ~ftqGL~~~~~~LyestG~~g---~S~v~~vD~~tgkv~~~~~----------l-~~~~fgeGi~~~~~~ly~ltw~~-- 84 (243)
T 3mbr_X 21 AFTEGLFYLRGHLYESTGETG---RSSVRKVDLETGRILQRAE----------V-PPPYFGAGIVAWRDRLIQLTWRN-- 84 (243)
T ss_dssp CCEEEEEEETTEEEEEECCTT---SCEEEEEETTTCCEEEEEE----------C-CTTCCEEEEEEETTEEEEEESSS--
T ss_pred cccccEEEECCEEEEECCCCC---CceEEEEECCCCCEEEEEe----------C-CCCcceeEEEEeCCEEEEEEeeC--
Confidence 355677888999999999654 2568999999986554433 1 12335677888899999986543
Q ss_pred CCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEE-eecCCCCCC
Q 010115 169 GSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP-LHCTGTGPS 247 (518)
Q Consensus 169 ~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~g~~p~ 247 (518)
+.+++||+.+.+-..-- +.+..+.+++..+++||+.-| .+.++.+|+++.+-.. +.. +..+.
T Consensus 85 ----~~v~v~D~~tl~~~~ti-----~~~~~Gwglt~dg~~L~vSdg-------s~~l~~iDp~t~~~~~~I~V-~~~g~ 147 (243)
T 3mbr_X 85 ----HEGFVYDLATLTPRARF-----RYPGEGWALTSDDSHLYMSDG-------TAVIRKLDPDTLQQVGSIKV-TAGGR 147 (243)
T ss_dssp ----SEEEEEETTTTEEEEEE-----ECSSCCCEEEECSSCEEEECS-------SSEEEEECTTTCCEEEEEEC-EETTE
T ss_pred ----CEEEEEECCcCcEEEEE-----eCCCCceEEeeCCCEEEEECC-------CCeEEEEeCCCCeEEEEEEE-ccCCc
Confidence 47999999987754432 233466777777788999743 3569999999876543 322 12222
Q ss_pred CCCC-cEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEE
Q 010115 248 PRSN-HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR 289 (518)
Q Consensus 248 ~r~~-~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 289 (518)
+... -.+...+++ ||+--- ..++|.+.|+++++=..
T Consensus 148 ~~~~lNeLe~~~G~-lyanvw-----~s~~I~vIDp~tG~V~~ 184 (243)
T 3mbr_X 148 PLDNLNELEWVNGE-LLANVW-----LTSRIARIDPASGKVVA 184 (243)
T ss_dssp ECCCEEEEEEETTE-EEEEET-----TTTEEEEECTTTCBEEE
T ss_pred ccccceeeEEeCCE-EEEEEC-----CCCeEEEEECCCCCEEE
Confidence 2222 123345565 775431 14689999999876443
No 25
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.59 E-value=0.0098 Score=59.01 Aligned_cols=227 Identities=18% Similarity=0.099 Sum_probs=123.6
Q ss_pred CEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCceeEE
Q 010115 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVW 176 (518)
Q Consensus 99 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~ 176 (518)
+.+|+.|+.+ ..+.++|+.+++-...-.. .. .-.+++.. +..||+.|+... .+.
T Consensus 2 ~~l~vs~~~d-----~~v~v~d~~~~~~~~~~~~------------~~-~~~~~~~s~dg~~l~~~~~~d~------~i~ 57 (391)
T 1l0q_A 2 TFAYIANSES-----DNISVIDVTSNKVTATIPV------------GS-NPMGAVISPDGTKVYVANAHSN------DVS 57 (391)
T ss_dssp EEEEEEETTT-----TEEEEEETTTTEEEEEEEC------------SS-SEEEEEECTTSSEEEEEEGGGT------EEE
T ss_pred CEEEEEcCCC-----CEEEEEECCCCeEEEEeec------------CC-CcceEEECCCCCEEEEECCCCC------eEE
Confidence 3577777654 4689999988754433221 11 11233332 356777776542 689
Q ss_pred EEECCCCcEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEE
Q 010115 177 TFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (518)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~ 254 (518)
.+|+.+++...... .+. .-.+++.. +..||+.+..+ ..+.+||+.+.+....... ......+
T Consensus 58 v~d~~~~~~~~~~~---~~~--~v~~~~~spdg~~l~~~~~~~------~~v~v~d~~~~~~~~~~~~-----~~~~~~~ 121 (391)
T 1l0q_A 58 IIDTATNNVIATVP---AGS--SPQGVAVSPDGKQVYVTNMAS------STLSVIDTTSNTVAGTVKT-----GKSPLGL 121 (391)
T ss_dssp EEETTTTEEEEEEE---CSS--SEEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEEEC-----SSSEEEE
T ss_pred EEECCCCeEEEEEE---CCC--CccceEECCCCCEEEEEECCC------CEEEEEECCCCeEEEEEeC-----CCCcceE
Confidence 99999887655433 222 22333332 34566664332 4589999998876544311 1112334
Q ss_pred EEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEcccCCCCCcCeEEEEE
Q 010115 255 ALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFD 331 (518)
Q Consensus 255 ~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd 331 (518)
+.. +++.+|+.++.+ +.++.||+.+.+.......+. ....++.. +..+|+.++.. ..+.++|
T Consensus 122 ~~s~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~~~dg~~l~~~~~~~-----~~v~~~d 186 (391)
T 1l0q_A 122 ALSPDGKKLYVTNNGD-----KTVSVINTVTKAVINTVSVGR-----SPKGIAVTPDGTKVYVANFDS-----MSISVID 186 (391)
T ss_dssp EECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEECCS-----SEEEEEECTTSSEEEEEETTT-----TEEEEEE
T ss_pred EECCCCCEEEEEeCCC-----CEEEEEECCCCcEEEEEecCC-----CcceEEECCCCCEEEEEeCCC-----CEEEEEE
Confidence 443 345566776543 369999998887665543321 11233332 34677776543 3599999
Q ss_pred CCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 332 ILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 332 ~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
+.+.+........ .....+.+. .+...|++.+... ....+.+||+.+.+
T Consensus 187 ~~~~~~~~~~~~~-------~~~~~~~~~-~~g~~l~~~~~~~--~~~~v~~~d~~~~~ 235 (391)
T 1l0q_A 187 TVTNSVIDTVKVE-------AAPSGIAVN-PEGTKAYVTNVDK--YFNTVSMIDTGTNK 235 (391)
T ss_dssp TTTTEEEEEEECS-------SEEEEEEEC-TTSSEEEEEEECS--SCCEEEEEETTTTE
T ss_pred CCCCeEEEEEecC-------CCccceEEC-CCCCEEEEEecCc--CCCcEEEEECCCCe
Confidence 9887665443211 112233333 2334555554211 13478889987654
No 26
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.57 E-value=0.03 Score=56.75 Aligned_cols=198 Identities=13% Similarity=0.169 Sum_probs=107.1
Q ss_pred EECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCC
Q 010115 154 SWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKS 233 (518)
Q Consensus 154 ~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t 233 (518)
..++..++.|+.+. .+..||+.+.+-...- ......-.....++..++.|+.++ .+.+||+.+
T Consensus 246 ~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~l~~~~~d~------~i~i~d~~~ 308 (445)
T 2ovr_B 246 QYDGRRVVSGAYDF------MVKVWDPETETCLHTL-----QGHTNRVYSLQFDGIHVVSGSLDT------SIRVWDVET 308 (445)
T ss_dssp EECSSCEEEEETTS------CEEEEEGGGTEEEEEE-----CCCSSCEEEEEECSSEEEEEETTS------CEEEEETTT
T ss_pred EECCCEEEEEcCCC------EEEEEECCCCcEeEEe-----cCCCCceEEEEECCCEEEEEeCCC------eEEEEECCC
Confidence 34666666666543 5778888776533221 111111222334666777776653 488999987
Q ss_pred CcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEE
Q 010115 234 LTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWY 313 (518)
Q Consensus 234 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iy 313 (518)
.+-...- . .......+...++. +++.|+.++ .+..||+.+.+-...-.. .........++..++.++
T Consensus 309 ~~~~~~~---~--~~~~~v~~~~~~~~-~l~~~~~dg-----~i~vwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~l 375 (445)
T 2ovr_B 309 GNCIHTL---T--GHQSLTSGMELKDN-ILVSGNADS-----TVKIWDIKTGQCLQTLQG--PNKHQSAVTCLQFNKNFV 375 (445)
T ss_dssp CCEEEEE---C--CCCSCEEEEEEETT-EEEEEETTS-----CEEEEETTTCCEEEEECS--TTSCSSCEEEEEECSSEE
T ss_pred CCEEEEE---c--CCcccEEEEEEeCC-EEEEEeCCC-----eEEEEECCCCcEEEEEcc--CCCCCCCEEEEEECCCEE
Confidence 6643321 1 11112233445666 667776554 489999876553222111 011122223444577778
Q ss_pred EEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccC
Q 010115 314 IAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (518)
Q Consensus 314 v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~ 389 (518)
+.|+.++ .+.+||+.+.+.......... . .....+..+.....+.+++.|+.++.....+.+||.+.+
T Consensus 376 ~s~~~dg-----~v~iwd~~~~~~~~~~~~~~~-~--~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 376 ITSSDDG-----TVKLWDLKTGEFIRNLVTLES-G--GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEETTS-----EEEEEETTTCCEEEEEEECTT-G--GGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred EEEeCCC-----eEEEEECCCCceeeeeecccc-C--CCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 8887654 489999988765442210100 0 111122223333456778888888766667888887654
No 27
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.43 E-value=0.023 Score=56.20 Aligned_cols=227 Identities=14% Similarity=0.084 Sum_probs=122.6
Q ss_pred CEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCceeEE
Q 010115 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVW 176 (518)
Q Consensus 99 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~ 176 (518)
..||+.|+.+ ..+.++|+.+.+....-.. .. .-.+++.. ++.||+.|... ..+.
T Consensus 44 ~~l~~~~~~d-----~~i~v~d~~~~~~~~~~~~------------~~-~v~~~~~spdg~~l~~~~~~~------~~v~ 99 (391)
T 1l0q_A 44 TKVYVANAHS-----NDVSIIDTATNNVIATVPA------------GS-SPQGVAVSPDGKQVYVTNMAS------STLS 99 (391)
T ss_dssp SEEEEEEGGG-----TEEEEEETTTTEEEEEEEC------------SS-SEEEEEECTTSSEEEEEETTT------TEEE
T ss_pred CEEEEECCCC-----CeEEEEECCCCeEEEEEEC------------CC-CccceEECCCCCEEEEEECCC------CEEE
Confidence 4577777543 4689999988765443321 11 11233332 45677665432 3699
Q ss_pred EEECCCCcEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEE
Q 010115 177 TFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (518)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~ 254 (518)
+||+.+++...... .. ..-.+++.. +..+|+.++.+ +.+.+||+.+.+....-..+. .-..+
T Consensus 100 v~d~~~~~~~~~~~---~~--~~~~~~~~s~dg~~l~~~~~~~------~~v~~~d~~~~~~~~~~~~~~-----~~~~~ 163 (391)
T 1l0q_A 100 VIDTTSNTVAGTVK---TG--KSPLGLALSPDGKKLYVTNNGD------KTVSVINTVTKAVINTVSVGR-----SPKGI 163 (391)
T ss_dssp EEETTTTEEEEEEE---CS--SSEEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEEECCS-----SEEEE
T ss_pred EEECCCCeEEEEEe---CC--CCcceEEECCCCCEEEEEeCCC------CEEEEEECCCCcEEEEEecCC-----CcceE
Confidence 99999987654433 11 122334433 34677776543 358999998887655432111 11233
Q ss_pred EEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CC-EEEEEcccCCCCCcCeEEEEE
Q 010115 255 ALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GT-KWYIAGGGSRKKRHAETLIFD 331 (518)
Q Consensus 255 ~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd 331 (518)
+.. +++.+|+.++.+ +.+..||+.+.+....... .....+++.. ++ .+|+.+... ....+.+||
T Consensus 164 ~~~~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~g~~l~~~~~~~---~~~~v~~~d 230 (391)
T 1l0q_A 164 AVTPDGTKVYVANFDS-----MSISVIDTVTNSVIDTVKV-----EAAPSGIAVNPEGTKAYVTNVDK---YFNTVSMID 230 (391)
T ss_dssp EECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEEC-----SSEEEEEEECTTSSEEEEEEECS---SCCEEEEEE
T ss_pred EECCCCCEEEEEeCCC-----CEEEEEECCCCeEEEEEec-----CCCccceEECCCCCEEEEEecCc---CCCcEEEEE
Confidence 333 344566766543 3599999988765544332 1111222222 34 455544211 125689999
Q ss_pred CCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 332 ILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 332 ~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
+.+.+-...... . .....+.+. .+...||+.++.+ +.+.+||+.+.+
T Consensus 231 ~~~~~~~~~~~~--~-----~~~~~~~~s-~dg~~l~~s~~~d----~~v~v~d~~~~~ 277 (391)
T 1l0q_A 231 TGTNKITARIPV--G-----PDPAGIAVT-PDGKKVYVALSFX----NTVSVIDTATNT 277 (391)
T ss_dssp TTTTEEEEEEEC--C-----SSEEEEEEC-TTSSEEEEEETTT----TEEEEEETTTTE
T ss_pred CCCCeEEEEEec--C-----CCccEEEEc-cCCCEEEEEcCCC----CEEEEEECCCCc
Confidence 988754432211 1 112233333 3345677766544 368999988765
No 28
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=97.33 E-value=0.067 Score=52.16 Aligned_cols=198 Identities=14% Similarity=0.073 Sum_probs=93.4
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCceeEE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~ 176 (518)
++.+++.|+.+ ..+.+||..+.++...... ......-.+++.. ++..++.|+... .+.
T Consensus 63 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~l~~~~~d~------~v~ 121 (372)
T 1k8k_C 63 DSNRIVTCGTD-----RNAYVWTLKGRTWKPTLVI----------LRINRAARCVRWAPNEKKFAVGSGSR------VIS 121 (372)
T ss_dssp TTTEEEEEETT-----SCEEEEEEETTEEEEEEEC----------CCCSSCEEEEEECTTSSEEEEEETTS------SEE
T ss_pred CCCEEEEEcCC-----CeEEEEECCCCeeeeeEEe----------ecCCCceeEEEECCCCCEEEEEeCCC------EEE
Confidence 45666777644 3588999988877655431 0111111222222 456666666532 355
Q ss_pred EEECCCCc-EEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCcccCcEEEEEcCCC----------------cEEE
Q 010115 177 TFDTETEC-WSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL----------------TWLP 238 (518)
Q Consensus 177 ~yd~~t~~-W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~----------------~W~~ 238 (518)
.||..+.. |...... ..+....-.++... ++.+++.|+.++ .+.+||+... .-..
T Consensus 122 i~d~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 194 (372)
T 1k8k_C 122 ICYFEQENDWWVCKHI-KKPIRSTVLSLDWHPNSVLLAAGSCDF------KCRIFSAYIKEVEERPAPTPWGSKMPFGEL 194 (372)
T ss_dssp EEEEETTTTEEEEEEE-CTTCCSCEEEEEECTTSSEEEEEETTS------CEEEEECCCTTTSCCCCCBTTBSCCCTTCE
T ss_pred EEEecCCCcceeeeee-ecccCCCeeEEEEcCCCCEEEEEcCCC------CEEEEEcccccccccccccccccccchhhh
Confidence 55554443 3332220 01111112222322 456777776543 4778885311 1111
Q ss_pred eecCCCCC-CCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEE-ECCEEEEEc
Q 010115 239 LHCTGTGP-SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGTKWYIAG 316 (518)
Q Consensus 239 ~~~~g~~p-~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~-~~~~iyv~G 316 (518)
+. .+. ....-.+++...+..+++.|+.++ .+..||+.+.+-...-.. .... ..+++. -++++++.|
T Consensus 195 ~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~---~~~~-v~~~~~~~~~~~l~~~ 262 (372)
T 1k8k_C 195 MF---ESSSSCGWVHGVCFSANGSRVAWVSHDS-----TVCLADADKKMAVATLAS---ETLP-LLAVTFITESSLVAAG 262 (372)
T ss_dssp EE---ECCCCSSCEEEEEECSSSSEEEEEETTT-----EEEEEEGGGTTEEEEEEC---SSCC-EEEEEEEETTEEEEEE
T ss_pred eE---ecCCCCCeEEEEEECCCCCEEEEEeCCC-----EEEEEECCCCceeEEEcc---CCCC-eEEEEEecCCCEEEEE
Confidence 11 111 111122333333332566666443 589999876653322221 1111 122222 367766655
Q ss_pred ccCCCCCcCeEEEEECCC--CceEEee
Q 010115 317 GGSRKKRHAETLIFDILK--GEWSVAI 341 (518)
Q Consensus 317 G~~~~~~~~~v~~yd~~~--~~W~~~~ 341 (518)
.++ .+.+||+.+ ++|..+.
T Consensus 263 -~d~-----~i~i~~~~~~~~~~~~~~ 283 (372)
T 1k8k_C 263 -HDC-----FPVLFTYDSAAGKLSFGG 283 (372)
T ss_dssp -TTS-----SCEEEEEETTTTEEEECC
T ss_pred -eCC-----eEEEEEccCcCceEEEee
Confidence 332 367777777 8887764
No 29
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.33 E-value=0.15 Score=50.31 Aligned_cols=227 Identities=14% Similarity=0.182 Sum_probs=124.3
Q ss_pred cceEEEEECCEEEEEcCcCCCCCCCcEEEEEcCCC--cEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCC
Q 010115 90 FNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTD 167 (518)
Q Consensus 90 ~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~ 167 (518)
.....+..++.||+.... ..++.||..+. .|+.-... ....+.+..++.+|+....
T Consensus 95 ~~~~~~~~~~~v~v~~~~------g~l~a~d~~tG~~~W~~~~~~--------------~~~~~p~~~~~~v~v~~~~-- 152 (376)
T 3q7m_A 95 LSGGVTVSGGHVYIGSEK------AQVYALNTSDGTVAWQTKVAG--------------EALSRPVVSDGLVLIHTSN-- 152 (376)
T ss_dssp EEEEEEEETTEEEEEETT------SEEEEEETTTCCEEEEEECSS--------------CCCSCCEEETTEEEEECTT--
T ss_pred cccCceEeCCEEEEEcCC------CEEEEEECCCCCEEEEEeCCC--------------ceEcCCEEECCEEEEEcCC--
Confidence 334556678888886531 46899999865 57664321 1122334558888875432
Q ss_pred CCCCceeEEEEECCCCc--EEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCC--cEEEeecCC
Q 010115 168 SGSDRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL--TWLPLHCTG 243 (518)
Q Consensus 168 ~~~~~~~v~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~g 243 (518)
..++.||+.+++ |+...... ....+...+.+..++.+|+ |.. -..+..||+.+. .|+...
T Consensus 153 -----g~l~~~d~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~~~v~~-g~~------~g~l~~~d~~tG~~~w~~~~--- 216 (376)
T 3q7m_A 153 -----GQLQALNEADGAVKWTVNLDMP-SLSLRGESAPTTAFGAAVV-GGD------NGRVSAVLMEQGQMIWQQRI--- 216 (376)
T ss_dssp -----SEEEEEETTTCCEEEEEECCC------CCCCCCEEETTEEEE-CCT------TTEEEEEETTTCCEEEEEEC---
T ss_pred -----CeEEEEECCCCcEEEEEeCCCC-ceeecCCCCcEEECCEEEE-EcC------CCEEEEEECCCCcEEEEEec---
Confidence 269999998876 87654311 1111222344556787776 322 135889998765 477643
Q ss_pred CCCCCC--------CCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC--eEEEeecCCCCCCCCcceEEEEECCEEE
Q 010115 244 TGPSPR--------SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM--IWTRIKIRGFHPSPRAGCCGVLCGTKWY 313 (518)
Q Consensus 244 ~~p~~r--------~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~v~~~~~~p~~r~~~~~~~~~~~iy 313 (518)
..|... .....++.++. +|+.+ .+ ..++.+|+++. .|+.-. +. ..+.+..++.||
T Consensus 217 ~~~~~~~~~~~~~~~~~~p~~~~~~-v~~~~-~~-----g~l~~~d~~tG~~~w~~~~-----~~---~~~~~~~~~~l~ 281 (376)
T 3q7m_A 217 SQATGSTEIDRLSDVDTTPVVVNGV-VFALA-YN-----GNLTALDLRSGQIMWKREL-----GS---VNDFIVDGNRIY 281 (376)
T ss_dssp CC-----------CCCCCCEEETTE-EEEEC-TT-----SCEEEEETTTCCEEEEECC-----CC---EEEEEEETTEEE
T ss_pred ccCCCCcccccccccCCCcEEECCE-EEEEe-cC-----cEEEEEECCCCcEEeeccC-----CC---CCCceEECCEEE
Confidence 111111 11223344444 66653 22 35999999765 476431 11 224455688999
Q ss_pred EEcccCCCCCcCeEEEEECCCCc--eEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 314 IAGGGSRKKRHAETLIFDILKGE--WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 314 v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
+.... ..+++||+.+++ |+.-. .. .....+.+.. .+.||+... + ..+++||+.+.+
T Consensus 282 ~~~~~------g~l~~~d~~tG~~~w~~~~-~~-----~~~~~~~~~~----~~~l~v~~~-~----g~l~~~d~~tG~ 339 (376)
T 3q7m_A 282 LVDQN------DRVMALTIDGGVTLWTQSD-LL-----HRLLTSPVLY----NGNLVVGDS-E----GYLHWINVEDGR 339 (376)
T ss_dssp EEETT------CCEEEEETTTCCEEEEECT-TT-----TSCCCCCEEE----TTEEEEECT-T----SEEEEEETTTCC
T ss_pred EEcCC------CeEEEEECCCCcEEEeecc-cC-----CCcccCCEEE----CCEEEEEeC-C----CeEEEEECCCCc
Confidence 87531 349999998765 76521 00 1111222222 255665432 1 268889887765
No 30
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.31 E-value=0.12 Score=49.19 Aligned_cols=233 Identities=11% Similarity=0.046 Sum_probs=116.7
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCceeEE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~ 176 (518)
++..++.|+.+ ..+.+++..+......-.. ....-.+++.. ++++++.|+.+. .+.
T Consensus 34 ~~~~l~s~~~d-----g~i~iw~~~~~~~~~~~~~------------h~~~v~~~~~~~~~~~l~s~~~d~------~i~ 90 (312)
T 4ery_A 34 NGEWLASSSAD-----KLIKIWGAYDGKFEKTISG------------HKLGISDVAWSSDSNLLVSASDDK------TLK 90 (312)
T ss_dssp TSSEEEEEETT-----SCEEEEETTTCCEEEEECC------------CSSCEEEEEECTTSSEEEEEETTS------EEE
T ss_pred CCCEEEEeeCC-----CeEEEEeCCCcccchhhcc------------CCCceEEEEEcCCCCEEEEECCCC------EEE
Confidence 35566667654 3578888877665443220 01111222222 466777777643 688
Q ss_pred EEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEE
Q 010115 177 TFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 255 (518)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~ 255 (518)
.||..+.+-...-. ...... .++.. -++.+++.|+.+. .+.+||+.+.+-...- ... ...-.+++
T Consensus 91 vwd~~~~~~~~~~~---~~~~~v-~~~~~~~~~~~l~s~~~d~------~i~iwd~~~~~~~~~~---~~~-~~~v~~~~ 156 (312)
T 4ery_A 91 IWDVSSGKCLKTLK---GHSNYV-FCCNFNPQSNLIVSGSFDE------SVRIWDVKTGKCLKTL---PAH-SDPVSAVH 156 (312)
T ss_dssp EEETTTCCEEEEEE---CCSSCE-EEEEECSSSSEEEEEETTS------CEEEEETTTCCEEEEE---CCC-SSCEEEEE
T ss_pred EEECCCCcEEEEEc---CCCCCE-EEEEEcCCCCEEEEEeCCC------cEEEEECCCCEEEEEe---cCC-CCcEEEEE
Confidence 89988876433221 111111 12222 2456677777654 3888999876543321 111 11111223
Q ss_pred EECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEcccCCCCCcCeEEEEECC
Q 010115 256 LYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDIL 333 (518)
Q Consensus 256 ~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 333 (518)
...+..+++.|+.++ .+..||+.+.+-....... ..+. ...+.+ +++.++.|+.++ .+.+||+.
T Consensus 157 ~~~~~~~l~~~~~d~-----~i~~wd~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~l~~~~~d~-----~i~iwd~~ 222 (312)
T 4ery_A 157 FNRDGSLIVSSSYDG-----LCRIWDTASGQCLKTLIDD--DNPP--VSFVKFSPNGKYILAATLDN-----TLKLWDYS 222 (312)
T ss_dssp ECTTSSEEEEEETTS-----CEEEEETTTCCEEEEECCS--SCCC--EEEEEECTTSSEEEEEETTT-----EEEEEETT
T ss_pred EcCCCCEEEEEeCCC-----cEEEEECCCCceeeEEecc--CCCc--eEEEEECCCCCEEEEEcCCC-----eEEEEECC
Confidence 333333677776654 4899998876543322110 1111 122222 566677776543 48899998
Q ss_pred CCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 334 KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 334 ~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
+.+-......... ....... .... ..+.+++.|+.++ .+.+||+.+.+
T Consensus 223 ~~~~~~~~~~~~~---~~~~~~~-~~~~-~~~~~l~sg~~dg----~i~vwd~~~~~ 270 (312)
T 4ery_A 223 KGKCLKTYTGHKN---EKYCIFA-NFSV-TGGKWIVSGSEDN----LVYIWNLQTKE 270 (312)
T ss_dssp TTEEEEEECSSCC---SSSCCCE-EEEC-SSSCEEEECCTTS----CEEEEETTTCC
T ss_pred CCcEEEEEEecCC---ceEEEEE-EEEe-CCCcEEEEECCCC----EEEEEECCCch
Confidence 8764432211111 1111111 1211 2244667777654 58888887665
No 31
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.30 E-value=0.064 Score=50.39 Aligned_cols=189 Identities=14% Similarity=0.050 Sum_probs=114.0
Q ss_pred cceEEEEECCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCC
Q 010115 90 FNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG 169 (518)
Q Consensus 90 ~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~ 169 (518)
+..+....++.||+-.|..+ .+.+.++|+.+.+=....+ + .+..++.+++..+++||+.....
T Consensus 44 ftqGL~~~~~~LyestG~~g---~S~v~~vD~~Tgkv~~~~~----------l-~~~~FgeGit~~g~~ly~ltw~~--- 106 (262)
T 3nol_A 44 FTEGFFYRNGYFYESTGLNG---RSSIRKVDIESGKTLQQIE----------L-GKRYFGEGISDWKDKIVGLTWKN--- 106 (262)
T ss_dssp EEEEEEEETTEEEEEEEETT---EEEEEEECTTTCCEEEEEE----------C-CTTCCEEEEEEETTEEEEEESSS---
T ss_pred ccceEEEECCEEEEECCCCC---CceEEEEECCCCcEEEEEe----------c-CCccceeEEEEeCCEEEEEEeeC---
Confidence 34566667899999998654 2468899999876544333 1 12335567888899999995543
Q ss_pred CCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEE-eecCCCCCCC
Q 010115 170 SDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP-LHCTGTGPSP 248 (518)
Q Consensus 170 ~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~g~~p~~ 248 (518)
+.+++||+++.+-..-- +.+-.+.+++..++.||+.-| .+.++.+|+++.+-.. +... ..+.+
T Consensus 107 ---~~v~v~D~~t~~~~~ti-----~~~~eG~glt~dg~~L~~SdG-------s~~i~~iDp~T~~v~~~I~V~-~~g~~ 170 (262)
T 3nol_A 107 ---GLGFVWNIRNLRQVRSF-----NYDGEGWGLTHNDQYLIMSDG-------TPVLRFLDPESLTPVRTITVT-AHGEE 170 (262)
T ss_dssp ---SEEEEEETTTCCEEEEE-----ECSSCCCCEEECSSCEEECCS-------SSEEEEECTTTCSEEEEEECE-ETTEE
T ss_pred ---CEEEEEECccCcEEEEE-----ECCCCceEEecCCCEEEEECC-------CCeEEEEcCCCCeEEEEEEec-cCCcc
Confidence 37999999988754332 223366677777788888643 2569999999876433 3221 11112
Q ss_pred CCCc-EEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCC-CCC-------CCcceEEEEE--CCEEEEEcc
Q 010115 249 RSNH-VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGF-HPS-------PRAGCCGVLC--GTKWYIAGG 317 (518)
Q Consensus 249 r~~~-~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~-~p~-------~r~~~~~~~~--~~~iyv~GG 317 (518)
.... .+...+++ ||+--- ..++|.+.|+++++=...-.... .|. .-.-.+.+.. .+++||.|-
T Consensus 171 ~~~lNELe~~~G~-lyan~w-----~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 171 LPELNELEWVDGE-IFANVW-----QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp CCCEEEEEEETTE-EEEEET-----TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred ccccceeEEECCE-EEEEEc-----cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 1111 23344665 776421 24689999999887544433321 111 1111233443 578888874
No 32
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.29 E-value=0.12 Score=48.73 Aligned_cols=205 Identities=12% Similarity=-0.013 Sum_probs=118.9
Q ss_pred eEEEEEC-CEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEE
Q 010115 150 HSLISWG-KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHM 228 (518)
Q Consensus 150 ~~~~~~~-~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 228 (518)
+.++..+ +.+|+..|... .+.+.++|+.+++=...-+ ++....+..++..+++||+..- ..+.+++
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~----~s~v~~iD~~tg~v~~~i~---l~~~~fgeGi~~~g~~lyv~t~------~~~~v~v 90 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYG----RSSVRQVALQTGKVENIHK---MDDSYFGEGLTLLNEKLYQVVW------LKNIGFI 90 (266)
T ss_dssp EEEEECSTTEEEEEECSTT----TCEEEEEETTTCCEEEEEE---CCTTCCEEEEEEETTEEEEEET------TCSEEEE
T ss_pred ccEEEeCCCeEEEECCCCC----CCEEEEEECCCCCEEEEEe---cCCCcceEEEEEeCCEEEEEEe------cCCEEEE
Confidence 6666665 89999877532 2469999999998655443 4544566677888999999843 2356999
Q ss_pred EEcCCCcEEE-eecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCC-cceEEE
Q 010115 229 FDLKSLTWLP-LHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPR-AGCCGV 306 (518)
Q Consensus 229 yd~~t~~W~~-~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r-~~~~~~ 306 (518)
||+.+.+=.. ++ .+ .| .+.+.+. +++.+|+.-| .+.++.+|+++.+-..--..+..+.+. .-..+.
T Consensus 91 iD~~t~~v~~~i~-~g-~~---~g~glt~-Dg~~l~vs~g------s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele 158 (266)
T 2iwa_A 91 YDRRTLSNIKNFT-HQ-MK---DGWGLAT-DGKILYGSDG------TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELE 158 (266)
T ss_dssp EETTTTEEEEEEE-CC-SS---SCCEEEE-CSSSEEEECS------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EECCCCcEEEEEE-CC-CC---CeEEEEE-CCCEEEEECC------CCeEEEEECCCCcEEEEEEECCCCcccccceeEE
Confidence 9998765332 22 12 12 2333433 5555888754 357999999886533322222111221 111333
Q ss_pred EECCEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCC------CC-CCCCCceEEEEeeCCccEEEEEcCCCCCCCC
Q 010115 307 LCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSS------SV-TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSN 379 (518)
Q Consensus 307 ~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~------~~-~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~ 379 (518)
..++++|+--.. .+++.+.|+++++-...-..+.- .. ........+++. .+.+.+||.|+.. +
T Consensus 159 ~~dg~lyvn~~~-----~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~-~~~~~lfVTgk~~----~ 228 (266)
T 2iwa_A 159 YINGEVWANIWQ-----TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWD-QENKRIFVTGKLW----P 228 (266)
T ss_dssp EETTEEEEEETT-----SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEE-TTTTEEEEEETTC----S
T ss_pred EECCEEEEecCC-----CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEc-CCCCEEEEECCCC----C
Confidence 448899876432 35799999998764332211100 00 000111223332 3456899998864 3
Q ss_pred cEEEEEcccC
Q 010115 380 QVEVLSIEKN 389 (518)
Q Consensus 380 ~v~~yd~~~~ 389 (518)
.+++.++...
T Consensus 229 ~v~~i~l~~~ 238 (266)
T 2iwa_A 229 KLFEIKLHLV 238 (266)
T ss_dssp EEEEEEEEEC
T ss_pred eEEEEEEecc
Confidence 6777776654
No 33
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=97.29 E-value=0.04 Score=55.32 Aligned_cols=240 Identities=13% Similarity=0.044 Sum_probs=123.2
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCceeE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSV 175 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v 175 (518)
++.+++.++.+ ..+.+||+.+.+......... ..... .....+.+ ++.+|+.|+... .+
T Consensus 133 ~~~~~~~~~~~-----~~i~~~d~~~g~~~~~~~~~~-------~~~~~-~~v~~~~~~~~~~~~~s~~~d~------~v 193 (433)
T 3bws_A 133 NTRLAIPLLED-----EGMDVLDINSGQTVRLSPPEK-------YKKKL-GFVETISIPEHNELWVSQMQAN------AV 193 (433)
T ss_dssp SSEEEEEBTTS-----SSEEEEETTTCCEEEECCCHH-------HHTTC-CEEEEEEEGGGTEEEEEEGGGT------EE
T ss_pred CCeEEEEeCCC-----CeEEEEECCCCeEeeecCccc-------ccccC-CceeEEEEcCCCEEEEEECCCC------EE
Confidence 67788877643 358999999877654322100 00001 11112233 678888887543 68
Q ss_pred EEEECCCCcEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcE
Q 010115 176 WTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV 253 (518)
Q Consensus 176 ~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~ 253 (518)
.+||+.+.+....-. .....-.+++.. +..+|+.++.+ ..+.+||+.+.+....- +....-..
T Consensus 194 ~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~------~~i~~~d~~~~~~~~~~-----~~~~~~~~ 258 (433)
T 3bws_A 194 HVFDLKTLAYKATVD----LTGKWSKILLYDPIRDLVYCSNWIS------EDISVIDRKTKLEIRKT-----DKIGLPRG 258 (433)
T ss_dssp EEEETTTCCEEEEEE----CSSSSEEEEEEETTTTEEEEEETTT------TEEEEEETTTTEEEEEC-----CCCSEEEE
T ss_pred EEEECCCceEEEEEc----CCCCCeeEEEEcCCCCEEEEEecCC------CcEEEEECCCCcEEEEe-----cCCCCceE
Confidence 999998876443322 111122233333 35677766543 35899999887664432 11111223
Q ss_pred EEEE-CCcEEEEEcCCCCCC---CCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEcccCCCCCcCeE
Q 010115 254 AALY-DDKNLLIFGGSSKSK---TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAET 327 (518)
Q Consensus 254 ~~~~-~~~~lyv~GG~~~~~---~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v 327 (518)
++.. +++ .+++++..... .-..+..||+.+.+-...... +. ...+++.. ++.+|+.++.+ ..+
T Consensus 259 ~~~~~~g~-~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~---~~--~~~~~~~~~~g~~l~~~~~~~-----~~v 327 (433)
T 3bws_A 259 LLLSKDGK-ELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP---PG--NKRHIVSGNTENKIYVSDMCC-----SKI 327 (433)
T ss_dssp EEECTTSS-EEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE---EE--CEEEEEECSSTTEEEEEETTT-----TEE
T ss_pred EEEcCCCC-EEEEEECCCCccccCCCeEEEEECCCCcEEeeccC---CC--CcceEEECCCCCEEEEEecCC-----CEE
Confidence 3333 344 44444432211 124699999987754443221 11 11122222 34688876644 358
Q ss_pred EEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCC----------CCCcEEEEEcccCC
Q 010115 328 LIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE----------PSNQVEVLSIEKNE 390 (518)
Q Consensus 328 ~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~----------~~~~v~~yd~~~~~ 390 (518)
.+||+.+.+-...... ......+.+.. +...|++.+..... ....+.+||+.+.+
T Consensus 328 ~v~d~~~~~~~~~~~~-------~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 328 EVYDLKEKKVQKSIPV-------FDKPNTIALSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp EEEETTTTEEEEEEEC-------SSSEEEEEECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred EEEECCCCcEEEEecC-------CCCCCeEEEcC-CCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence 9999987665443211 11123344432 33445544432211 02478999987755
No 34
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.059 Score=52.55 Aligned_cols=237 Identities=10% Similarity=0.082 Sum_probs=119.2
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-C--CEEEEEcCcCCCCCCcee
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-G--KKVLLVGGKTDSGSDRVS 174 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~ 174 (518)
++..++.|+.+ ..+.+||....++..+... ......-.+++.. + +.+++.|+.+. .
T Consensus 22 ~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~----------~~h~~~v~~~~~~~~~~~~~l~s~~~dg------~ 80 (379)
T 3jrp_A 22 YGKRLATCSSD-----KTIKIFEVEGETHKLIDTL----------TGHEGPVWRVDWAHPKFGTILASCSYDG------K 80 (379)
T ss_dssp SSSEEEEEETT-----SCEEEEEEETTEEEEEEEE----------CCCSSCEEEEEECCGGGCSEEEEEETTS------C
T ss_pred CCCEEEEEECC-----CcEEEEecCCCcceeeeEe----------cCCCCcEEEEEeCCCCCCCEEEEeccCC------E
Confidence 35566667644 3588899887777665542 1111111222222 2 56777777643 5
Q ss_pred EEEEECCCCcEEEeeecCCCCCCCcc-eEEEEE-C--CEEEEEcccCCCCcccCcEEEEEcCCCcE-EEeecCCCCCCCC
Q 010115 175 VWTFDTETECWSVVEAKGDIPVARSG-HTVVRA-S--SVLILFGGEDGKRRKLNDLHMFDLKSLTW-LPLHCTGTGPSPR 249 (518)
Q Consensus 175 v~~yd~~t~~W~~~~~~~~~p~~r~~-~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~yd~~t~~W-~~~~~~g~~p~~r 249 (518)
+..||..+.+|..+.. ....... .++... + +.+++.|+.+. .+.+||+.+..- ...... . ...
T Consensus 81 v~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~d~------~i~v~d~~~~~~~~~~~~~-~--~~~ 148 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAV---HAVHSASVNSVQWAPHEYGPLLLVASSDG------KVSVVEFKENGTTSPIIID-A--HAI 148 (379)
T ss_dssp EEEEEEETTEEEEEEE---ECCCSSCEEEEEECCGGGCSEEEEEETTS------EEEEEECCTTSCCCEEEEE-C--CTT
T ss_pred EEEEEcCCCceeEeee---ecCCCcceEEEEeCCCCCCCEEEEecCCC------cEEEEecCCCCceeeEEec-C--CCC
Confidence 8888999998877664 2221122 222222 2 56777776543 477888876521 111100 0 111
Q ss_pred CCcEEEEEC--------------CcEEEEEcCCCCCCCCCcEEEEEcCC--CeEEEeecCCCCCCCCcceEEEEE-C---
Q 010115 250 SNHVAALYD--------------DKNLLIFGGSSKSKTLNDLYSLDFET--MIWTRIKIRGFHPSPRAGCCGVLC-G--- 309 (518)
Q Consensus 250 ~~~~~~~~~--------------~~~lyv~GG~~~~~~~~~v~~yd~~~--~~W~~v~~~~~~p~~r~~~~~~~~-~--- 309 (518)
.-.+++... +. +++.|+.++ .+..||+.+ ..|..+..... ....-.+++.. +
T Consensus 149 ~v~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~ 220 (379)
T 3jrp_A 149 GVNSASWAPATIEEDGEHNGTKESR-KFVTGGADN-----LVKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLL 220 (379)
T ss_dssp CEEEEEECCCC----------CTTC-EEEEEETTS-----CEEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSS
T ss_pred ceEEEEEcCccccccccccCCCCCC-EEEEEeCCC-----eEEEEEecCCCcceeeEEEEec--ccCcEeEEEECCCCCC
Confidence 112222332 45 677776654 478888754 34555443311 11111222222 4
Q ss_pred CEEEEEcccCCCCCcCeEEEEECCCCc--eEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcc
Q 010115 310 TKWYIAGGGSRKKRHAETLIFDILKGE--WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIE 387 (518)
Q Consensus 310 ~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~ 387 (518)
+++++.|+.++. +.+||+.+.. +....... .........+.+.. ++.+++.|+.++ .+.+|++.
T Consensus 221 ~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~--~g~~l~~~~~dg----~i~iw~~~ 286 (379)
T 3jrp_A 221 RSYLASVSQDRT-----CIIWTQDNEQGPWKKTLLKE---EKFPDVLWRASWSL--SGNVLALSGGDN----KVTLWKEN 286 (379)
T ss_dssp SEEEEEEETTSC-----EEEEEESSTTSCCEEEESSS---SCCSSCEEEEEECS--SSCCEEEEESSS----SEEEEEEE
T ss_pred CCeEEEEeCCCE-----EEEEeCCCCCccceeeeecc---ccCCCcEEEEEEcC--CCCEEEEecCCC----cEEEEeCC
Confidence 688888886654 7888877653 22211100 01112223334432 233566666643 58888887
Q ss_pred cC
Q 010115 388 KN 389 (518)
Q Consensus 388 ~~ 389 (518)
..
T Consensus 287 ~~ 288 (379)
T 3jrp_A 287 LE 288 (379)
T ss_dssp ET
T ss_pred CC
Confidence 43
No 35
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=97.19 E-value=0.024 Score=56.95 Aligned_cols=227 Identities=12% Similarity=0.025 Sum_probs=117.6
Q ss_pred cEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCC
Q 010115 115 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 193 (518)
Q Consensus 115 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~ 193 (518)
.++.+|+.+..++.+... +..... .+++.. ++.+++.++... .+..||+.+.+.........
T Consensus 102 ~l~~~d~~~~~~~~~~~~----------~~~~~~-~~~~~s~~~~~~~~~~~~~------~i~~~d~~~g~~~~~~~~~~ 164 (433)
T 3bws_A 102 KLIALDKEGITHRFISRF----------KTGFQP-KSVRFIDNTRLAIPLLEDE------GMDVLDINSGQTVRLSPPEK 164 (433)
T ss_dssp CEEECCBTTCSEEEEEEE----------ECSSCB-CCCEESSSSEEEEEBTTSS------SEEEEETTTCCEEEECCCHH
T ss_pred EEEEECCCCCcceEEEEE----------cCCCCc-eEEEEeCCCeEEEEeCCCC------eEEEEECCCCeEeeecCccc
Confidence 678888877766655442 111111 122222 678888876542 58999999888665432100
Q ss_pred CCCCCcc-eEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEE-CCcEEEEEcCCCC
Q 010115 194 IPVARSG-HTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSK 270 (518)
Q Consensus 194 ~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~~~ 270 (518)
....... .+++. .++.+|+.|+.+ ..+.+||+.+.+....- .. ....-.+++.. +++.+|+.++.+
T Consensus 165 ~~~~~~~v~~~~~~~~~~~~~s~~~d------~~v~~~d~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~l~~~~~~~- 233 (433)
T 3bws_A 165 YKKKLGFVETISIPEHNELWVSQMQA------NAVHVFDLKTLAYKATV---DL-TGKWSKILLYDPIRDLVYCSNWIS- 233 (433)
T ss_dssp HHTTCCEEEEEEEGGGTEEEEEEGGG------TEEEEEETTTCCEEEEE---EC-SSSSEEEEEEETTTTEEEEEETTT-
T ss_pred ccccCCceeEEEEcCCCEEEEEECCC------CEEEEEECCCceEEEEE---cC-CCCCeeEEEEcCCCCEEEEEecCC-
Confidence 1111111 11222 257888887654 35889999876544322 11 11112233333 345566666443
Q ss_pred CCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCC---CcCeEEEEECCCCceEEeecCCCC
Q 010115 271 SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKK---RHAETLIFDILKGEWSVAITSPSS 346 (518)
Q Consensus 271 ~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~---~~~~v~~yd~~~~~W~~~~~~~~~ 346 (518)
+.+..||+.+.+....... ...-.+++.. +++.+++++..... .-..+++||+.+.+-......+
T Consensus 234 ----~~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~-- 302 (433)
T 3bws_A 234 ----EDISVIDRKTKLEIRKTDK-----IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPP-- 302 (433)
T ss_dssp ----TEEEEEETTTTEEEEECCC-----CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEE--
T ss_pred ----CcEEEEECCCCcEEEEecC-----CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCC--
Confidence 3699999988765443221 1112233332 45444444432211 1246899999887654432111
Q ss_pred CCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 347 SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 347 ~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
.....+.+. .+...+|+.++.++ .+.+||+.+.+
T Consensus 303 -----~~~~~~~~~-~~g~~l~~~~~~~~----~v~v~d~~~~~ 336 (433)
T 3bws_A 303 -----GNKRHIVSG-NTENKIYVSDMCCS----KIEVYDLKEKK 336 (433)
T ss_dssp -----ECEEEEEEC-SSTTEEEEEETTTT----EEEEEETTTTE
T ss_pred -----CCcceEEEC-CCCCEEEEEecCCC----EEEEEECCCCc
Confidence 011223333 33346777765543 68899987654
No 36
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.14 E-value=0.15 Score=48.11 Aligned_cols=202 Identities=8% Similarity=-0.025 Sum_probs=116.4
Q ss_pred ceEEEEEC-CEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCC
Q 010115 91 NHAAAVIG-NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG 169 (518)
Q Consensus 91 ~~~~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~ 169 (518)
-+++++.+ +.||+..|..+ .+.+.++|+.+++=...-+ + ....++.+++..+++||+..-.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~---~s~v~~iD~~tg~v~~~i~----------l-~~~~fgeGi~~~g~~lyv~t~~---- 84 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYG---RSSVRQVALQTGKVENIHK----------M-DDSYFGEGLTLLNEKLYQVVWL---- 84 (266)
T ss_dssp EEEEEECSTTEEEEEECSTT---TCEEEEEETTTCCEEEEEE----------C-CTTCCEEEEEEETTEEEEEETT----
T ss_pred cccEEEeCCCeEEEECCCCC---CCEEEEEECCCCCEEEEEe----------c-CCCcceEEEEEeCCEEEEEEec----
Confidence 36666665 78999877432 3679999999886544322 1 1122456777789999998543
Q ss_pred CCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCC
Q 010115 170 SDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPR 249 (518)
Q Consensus 170 ~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r 249 (518)
.+.+++||+.+.+=..--+ .+ .-.+.+++..++++|+.-| .+.++.+|+++.+-...-..+..+.+.
T Consensus 85 --~~~v~viD~~t~~v~~~i~---~g-~~~g~glt~Dg~~l~vs~g-------s~~l~viD~~t~~v~~~I~Vg~~~~p~ 151 (266)
T 2iwa_A 85 --KNIGFIYDRRTLSNIKNFT---HQ-MKDGWGLATDGKILYGSDG-------TSILYEIDPHTFKLIKKHNVKYNGHRV 151 (266)
T ss_dssp --CSEEEEEETTTTEEEEEEE---CC-SSSCCEEEECSSSEEEECS-------SSEEEEECTTTCCEEEEEECEETTEEC
T ss_pred --CCEEEEEECCCCcEEEEEE---CC-CCCeEEEEECCCEEEEECC-------CCeEEEEECCCCcEEEEEEECCCCccc
Confidence 2479999999876433222 12 1234556666778998643 367999999887643322111222221
Q ss_pred CC-cEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCC-C--------CCCCCcceEEEEE--CCEEEEEcc
Q 010115 250 SN-HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRG-F--------HPSPRAGCCGVLC--GTKWYIAGG 317 (518)
Q Consensus 250 ~~-~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~-~--------~p~~r~~~~~~~~--~~~iyv~GG 317 (518)
.. ..+...++. +|+--.. .++|.+.|+++++=...-..+ . .+..-.-.+.+.. ++++||.|+
T Consensus 152 ~~~nele~~dg~-lyvn~~~-----~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk 225 (266)
T 2iwa_A 152 IRLNELEYINGE-VWANIWQ-----TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK 225 (266)
T ss_dssp CCEEEEEEETTE-EEEEETT-----SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET
T ss_pred ccceeEEEECCE-EEEecCC-----CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC
Confidence 11 123344554 7765322 468999999887533322221 0 0100111334444 468999987
Q ss_pred cCCCCCcCeEEEEECCC
Q 010115 318 GSRKKRHAETLIFDILK 334 (518)
Q Consensus 318 ~~~~~~~~~v~~yd~~~ 334 (518)
.. +.+++.++..
T Consensus 226 ~~-----~~v~~i~l~~ 237 (266)
T 2iwa_A 226 LW-----PKLFEIKLHL 237 (266)
T ss_dssp TC-----SEEEEEEEEE
T ss_pred CC-----CeEEEEEEec
Confidence 65 3477766544
No 37
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=97.13 E-value=0.11 Score=50.56 Aligned_cols=241 Identities=10% Similarity=0.040 Sum_probs=118.6
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCceeEE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~ 176 (518)
++++++.|+.+ ..+.+||..+..|..+... ......-.+++.. ++.+++.|+.+. .+.
T Consensus 19 ~~~~l~~~~~d-----~~v~i~~~~~~~~~~~~~~----------~~h~~~v~~~~~~~~~~~l~~~~~dg------~i~ 77 (372)
T 1k8k_C 19 DRTQIAICPNN-----HEVHIYEKSGNKWVQVHEL----------KEHNGQVTGVDWAPDSNRIVTCGTDR------NAY 77 (372)
T ss_dssp TSSEEEEECSS-----SEEEEEEEETTEEEEEEEE----------ECCSSCEEEEEEETTTTEEEEEETTS------CEE
T ss_pred CCCEEEEEeCC-----CEEEEEeCCCCcEEeeeee----------cCCCCcccEEEEeCCCCEEEEEcCCC------eEE
Confidence 45567777654 4689999999877665542 1111111223332 566667776542 478
Q ss_pred EEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCcccCcEEEEEcCCCc-EEEeecCCCCCCCCCCcEE
Q 010115 177 TFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLT-WLPLHCTGTGPSPRSNHVA 254 (518)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~g~~p~~r~~~~~ 254 (518)
.||..+.++...... ......-.++... ++.+++.|+.++ .+.+||+.+.. |...... ..+....-.++
T Consensus 78 vwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~------~v~i~d~~~~~~~~~~~~~-~~~~~~~i~~~ 148 (372)
T 1k8k_C 78 VWTLKGRTWKPTLVI--LRINRAARCVRWAPNEKKFAVGSGSR------VISICYFEQENDWWVCKHI-KKPIRSTVLSL 148 (372)
T ss_dssp EEEEETTEEEEEEEC--CCCSSCEEEEEECTTSSEEEEEETTS------SEEEEEEETTTTEEEEEEE-CTTCCSCEEEE
T ss_pred EEECCCCeeeeeEEe--ecCCCceeEEEECCCCCEEEEEeCCC------EEEEEEecCCCcceeeeee-ecccCCCeeEE
Confidence 888888887655431 1111112222222 456677776543 36666665543 3332211 11112222233
Q ss_pred EEECCcEEEEEcCCCCCCCCCcEEEEEcCCC----------------eEEEeecCCCCCCCCcceEEEEE-CCEEEEEcc
Q 010115 255 ALYDDKNLLIFGGSSKSKTLNDLYSLDFETM----------------IWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGG 317 (518)
Q Consensus 255 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~----------------~W~~v~~~~~~p~~r~~~~~~~~-~~~iyv~GG 317 (518)
+...+..+++.|+.++ .+..||+... .-+.+.... .....-.+++.. +++.++.|+
T Consensus 149 ~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~ 221 (372)
T 1k8k_C 149 DWHPNSVLLAAGSCDF-----KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS--SSCGWVHGVCFSANGSRVAWVS 221 (372)
T ss_dssp EECTTSSEEEEEETTS-----CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC--CCSSCEEEEEECSSSSEEEEEE
T ss_pred EEcCCCCEEEEEcCCC-----CEEEEEcccccccccccccccccccchhhheEecC--CCCCeEEEEEECCCCCEEEEEe
Confidence 3443333677776543 4888885311 111121110 011111222222 556777776
Q ss_pred cCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEccc--CCccc
Q 010115 318 GSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK--NESSM 393 (518)
Q Consensus 318 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~--~~w~~ 393 (518)
.++ .+.+||+.+.+-....... ......+.+... +.+++.| .++ .+.+|++.. .+|..
T Consensus 222 ~d~-----~i~i~d~~~~~~~~~~~~~------~~~v~~~~~~~~--~~~l~~~-~d~----~i~i~~~~~~~~~~~~ 281 (372)
T 1k8k_C 222 HDS-----TVCLADADKKMAVATLASE------TLPLLAVTFITE--SSLVAAG-HDC----FPVLFTYDSAAGKLSF 281 (372)
T ss_dssp TTT-----EEEEEEGGGTTEEEEEECS------SCCEEEEEEEET--TEEEEEE-TTS----SCEEEEEETTTTEEEE
T ss_pred CCC-----EEEEEECCCCceeEEEccC------CCCeEEEEEecC--CCEEEEE-eCC----eEEEEEccCcCceEEE
Confidence 543 4889998776543322111 112233444332 3455555 332 678888887 66654
No 38
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.12 E-value=0.066 Score=54.13 Aligned_cols=229 Identities=12% Similarity=0.157 Sum_probs=121.5
Q ss_pred EEECCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcee
Q 010115 95 AVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVS 174 (518)
Q Consensus 95 ~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 174 (518)
...++..++.|+.+ ..+.+||..+.+-...-. ... ..-.++..++.+++.|+.++ .
T Consensus 139 ~~~d~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~------------~h~-~~v~~l~~~~~~l~sg~~dg------~ 194 (435)
T 1p22_A 139 LQYDDQKIVSGLRD-----NTIKIWDKNTLECKRILT------------GHT-GSVLCLQYDERVIITGSSDS------T 194 (435)
T ss_dssp EECCSSEEEEEESS-----SCEEEEESSSCCEEEEEC------------CCS-SCEEEEECCSSEEEEEETTS------C
T ss_pred EEECCCEEEEEeCC-----CeEEEEeCCCCeEEEEEc------------CCC-CcEEEEEECCCEEEEEcCCC------e
Confidence 33467777778755 468999988765433221 001 11233344777788887653 5
Q ss_pred EEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEE
Q 010115 175 VWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (518)
Q Consensus 175 v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~ 254 (518)
+..||..+.+-...-. .....-..+...+..++.|+.++ .+.+||+.+..-..... ..........+
T Consensus 195 i~vwd~~~~~~~~~~~-----~h~~~v~~l~~~~~~l~s~s~dg------~i~vwd~~~~~~~~~~~--~~~~~~~~v~~ 261 (435)
T 1p22_A 195 VRVWDVNTGEMLNTLI-----HHCEAVLHLRFNNGMMVTCSKDR------SIAVWDMASPTDITLRR--VLVGHRAAVNV 261 (435)
T ss_dssp EEEEESSSCCEEEEEC-----CCCSCEEEEECCTTEEEEEETTS------CEEEEECSSSSCCEEEE--EECCCSSCEEE
T ss_pred EEEEECCCCcEEEEEc-----CCCCcEEEEEEcCCEEEEeeCCC------cEEEEeCCCCCCceeee--EecCCCCcEEE
Confidence 8889998876433221 11112223334555677776554 47888887654221100 01111122233
Q ss_pred EEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCCCcCeEEEEECCC
Q 010115 255 ALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILK 334 (518)
Q Consensus 255 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~ 334 (518)
...++. .++.|+.++ .+..||+.+.+-...-.. ......++..++.+++.|+.++. +.+||+.+
T Consensus 262 ~~~~~~-~l~s~~~dg-----~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~l~~g~~dg~-----i~iwd~~~ 325 (435)
T 1p22_A 262 VDFDDK-YIVSASGDR-----TIKVWNTSTCEFVRTLNG-----HKRGIACLQYRDRLVVSGSSDNT-----IRLWDIEC 325 (435)
T ss_dssp EEEETT-EEEEEETTS-----EEEEEETTTCCEEEEEEC-----CSSCEEEEEEETTEEEEEETTSC-----EEEEETTT
T ss_pred EEeCCC-EEEEEeCCC-----eEEEEECCcCcEEEEEcC-----CCCcEEEEEeCCCEEEEEeCCCe-----EEEEECCC
Confidence 444677 566666543 589999887653322211 11112333446677777776543 89999987
Q ss_pred CceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 335 GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 335 ~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
.+-..... .. ......+.+ . +..++.|+.++ .+.+||+.+.+
T Consensus 326 ~~~~~~~~--~h----~~~v~~~~~--~--~~~l~sg~~dg----~i~vwd~~~~~ 367 (435)
T 1p22_A 326 GACLRVLE--GH----EELVRCIRF--D--NKRIVSGAYDG----KIKVWDLVAAL 367 (435)
T ss_dssp CCEEEEEC--CC----SSCEEEEEC--C--SSEEEEEETTS----CEEEEEHHHHT
T ss_pred CCEEEEEe--CC----cCcEEEEEe--c--CCEEEEEeCCC----cEEEEECCCCC
Confidence 65433221 11 111222222 1 33567777654 68899987654
No 39
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.11 E-value=0.09 Score=50.24 Aligned_cols=187 Identities=14% Similarity=0.122 Sum_probs=97.9
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCc-ceEEEEE-CCEEEEEcccCCCCcccCcEEEEEcCC
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARS-GHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKS 233 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~-~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t 233 (518)
+++.++.|+.+. .+..||..+.+...... +..... -.+++.. ++..++.|+.++ .+.+||+.+
T Consensus 108 ~~~~l~~~~~d~------~i~~~d~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~dg------~v~~~d~~~ 172 (337)
T 1gxr_A 108 DGCTLIVGGEAS------TLSIWDLAAPTPRIKAE---LTSSAPACYALAISPDSKVCFSCCSDG------NIAVWDLHN 172 (337)
T ss_dssp TSSEEEEEESSS------EEEEEECCCC--EEEEE---EECSSSCEEEEEECTTSSEEEEEETTS------CEEEEETTT
T ss_pred CCCEEEEEcCCC------cEEEEECCCCCcceeee---cccCCCceEEEEECCCCCEEEEEeCCC------cEEEEeCCC
Confidence 456666666532 68899999887544432 111111 1222232 456666766543 488999988
Q ss_pred CcEEEeecCCCCCCCCCCcEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCE
Q 010115 234 LTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK 311 (518)
Q Consensus 234 ~~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~ 311 (518)
.+....- ..... .-.+++.. ++. +++.|+.+ ..+..||+.+.+-...... +. ...+++.. +++
T Consensus 173 ~~~~~~~---~~~~~-~i~~~~~~~~~~-~l~~~~~d-----g~i~~~d~~~~~~~~~~~~---~~--~v~~~~~s~~~~ 237 (337)
T 1gxr_A 173 QTLVRQF---QGHTD-GASCIDISNDGT-KLWTGGLD-----NTVRSWDLREGRQLQQHDF---TS--QIFSLGYCPTGE 237 (337)
T ss_dssp TEEEEEE---CCCSS-CEEEEEECTTSS-EEEEEETT-----SEEEEEETTTTEEEEEEEC---SS--CEEEEEECTTSS
T ss_pred Cceeeee---ecccC-ceEEEEECCCCC-EEEEEecC-----CcEEEEECCCCceEeeecC---CC--ceEEEEECCCCC
Confidence 7654432 11111 12233333 344 66666644 3599999987654333221 11 11222222 566
Q ss_pred EEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 312 WYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 312 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
++++|+.++ .+.+||+.+..-..+... ......+.+.. ++.+++.|+.++ .+.+||+.+.+
T Consensus 238 ~l~~~~~~~-----~i~~~~~~~~~~~~~~~~-------~~~v~~~~~~~--~~~~l~~~~~dg----~i~~~~~~~~~ 298 (337)
T 1gxr_A 238 WLAVGMESS-----NVEVLHVNKPDKYQLHLH-------ESCVLSLKFAY--CGKWFVSTGKDN----LLNAWRTPYGA 298 (337)
T ss_dssp EEEEEETTS-----CEEEEETTSSCEEEECCC-------SSCEEEEEECT--TSSEEEEEETTS----EEEEEETTTCC
T ss_pred EEEEEcCCC-----cEEEEECCCCCeEEEcCC-------ccceeEEEECC--CCCEEEEecCCC----cEEEEECCCCe
Confidence 777776543 388999887664433211 11223333332 233556666543 68888887665
No 40
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.11 E-value=0.063 Score=51.36 Aligned_cols=225 Identities=13% Similarity=0.103 Sum_probs=114.3
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCceeEE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~ 176 (518)
+++.++.|+.+ ..+.+||..+.+....... ......-.+++.. +++.++.|+... .+.
T Consensus 108 ~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~----------~~~~~~i~~~~~~~~~~~l~~~~~dg------~v~ 166 (337)
T 1gxr_A 108 DGCTLIVGGEA-----STLSIWDLAAPTPRIKAEL----------TSSAPACYALAISPDSKVCFSCCSDG------NIA 166 (337)
T ss_dssp TSSEEEEEESS-----SEEEEEECCCC--EEEEEE----------ECSSSCEEEEEECTTSSEEEEEETTS------CEE
T ss_pred CCCEEEEEcCC-----CcEEEEECCCCCcceeeec----------ccCCCceEEEEECCCCCEEEEEeCCC------cEE
Confidence 45566666644 4688999988775443321 0111111222222 456666666543 588
Q ss_pred EEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEE
Q 010115 177 TFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 255 (518)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~ 255 (518)
.||+.+.+....-. .... .-.++... ++..++.|+.+ ..+.+||+.+.+-.... ..+ ..-.+++
T Consensus 167 ~~d~~~~~~~~~~~---~~~~-~i~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~---~~~--~~v~~~~ 231 (337)
T 1gxr_A 167 VWDLHNQTLVRQFQ---GHTD-GASCIDISNDGTKLWTGGLD------NTVRSWDLREGRQLQQH---DFT--SQIFSLG 231 (337)
T ss_dssp EEETTTTEEEEEEC---CCSS-CEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEE---ECS--SCEEEEE
T ss_pred EEeCCCCceeeeee---cccC-ceEEEEECCCCCEEEEEecC------CcEEEEECCCCceEeee---cCC--CceEEEE
Confidence 99998876544321 1111 11222332 45666666644 34889999876544332 111 1122333
Q ss_pred EECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCCCcCeEEEEECCC
Q 010115 256 LYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILK 334 (518)
Q Consensus 256 ~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~ 334 (518)
...+..+++.|+.++ .+..||+.+..-..+... ...-.++... ++++++.|+.+ ..+.+||+.+
T Consensus 232 ~s~~~~~l~~~~~~~-----~i~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~~~~~ 296 (337)
T 1gxr_A 232 YCPTGEWLAVGMESS-----NVEVLHVNKPDKYQLHLH-----ESCVLSLKFAYCGKWFVSTGKD-----NLLNAWRTPY 296 (337)
T ss_dssp ECTTSSEEEEEETTS-----CEEEEETTSSCEEEECCC-----SSCEEEEEECTTSSEEEEEETT-----SEEEEEETTT
T ss_pred ECCCCCEEEEEcCCC-----cEEEEECCCCCeEEEcCC-----ccceeEEEECCCCCEEEEecCC-----CcEEEEECCC
Confidence 433333666666543 589999987654333221 1111222222 56777777754 3488999888
Q ss_pred CceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEc
Q 010115 335 GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSI 386 (518)
Q Consensus 335 ~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~ 386 (518)
.+-...... ......+.+.. ++..++.|+.++ .+.+|++
T Consensus 297 ~~~~~~~~~-------~~~v~~~~~s~--~~~~l~~~~~dg----~i~iw~~ 335 (337)
T 1gxr_A 297 GASIFQSKE-------SSSVLSCDISV--DDKYIVTGSGDK----KATVYEV 335 (337)
T ss_dssp CCEEEEEEC-------SSCEEEEEECT--TSCEEEEEETTS----CEEEEEE
T ss_pred CeEEEEecC-------CCcEEEEEECC--CCCEEEEecCCC----eEEEEEE
Confidence 765533211 11123333332 233556666543 4666664
No 41
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.10 E-value=0.048 Score=51.37 Aligned_cols=158 Identities=10% Similarity=0.047 Sum_probs=100.1
Q ss_pred cceEEEEECCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCC
Q 010115 90 FNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG 169 (518)
Q Consensus 90 ~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~ 169 (518)
+..+....++.||+-.|..+. +.++|+.+.+=..... .+..++.+++..+++||+.....
T Consensus 56 ftqGL~~~~~~Ly~stG~~g~-----v~~iD~~Tgkv~~~~l------------~~~~FgeGit~~g~~Ly~ltw~~--- 115 (268)
T 3nok_A 56 FTQGLVFHQGHFFESTGHQGT-----LRQLSLESAQPVWMER------------LGNIFAEGLASDGERLYQLTWTE--- 115 (268)
T ss_dssp CEEEEEEETTEEEEEETTTTE-----EEECCSSCSSCSEEEE------------CTTCCEEEEEECSSCEEEEESSS---
T ss_pred ccceEEEECCEEEEEcCCCCE-----EEEEECCCCcEEeEEC------------CCCcceeEEEEeCCEEEEEEccC---
Confidence 446777778999999996643 8889998864322111 11224566888899999985543
Q ss_pred CCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEE-eecCCCCCCC
Q 010115 170 SDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP-LHCTGTGPSP 248 (518)
Q Consensus 170 ~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~g~~p~~ 248 (518)
+.+++||+++.+-..--+ .+-.+.+++..++.||+.-| .+.++.+|+++.+-.. +.. +.-+.+
T Consensus 116 ---~~v~V~D~~Tl~~~~ti~-----~~~eGwGLt~Dg~~L~vSdG-------s~~l~~iDp~T~~v~~~I~V-~~~g~~ 179 (268)
T 3nok_A 116 ---GLLFTWSGMPPQRERTTR-----YSGEGWGLCYWNGKLVRSDG-------GTMLTFHEPDGFALVGAVQV-KLRGQP 179 (268)
T ss_dssp ---CEEEEEETTTTEEEEEEE-----CSSCCCCEEEETTEEEEECS-------SSEEEEECTTTCCEEEEEEC-EETTEE
T ss_pred ---CEEEEEECCcCcEEEEEe-----CCCceeEEecCCCEEEEECC-------CCEEEEEcCCCCeEEEEEEe-CCCCcc
Confidence 479999999887554322 23456677778899999854 3569999999876543 221 122222
Q ss_pred CCC-cEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEE
Q 010115 249 RSN-HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR 289 (518)
Q Consensus 249 r~~-~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 289 (518)
... -.+...+++ ||+--- ..++|.+.|+++++=..
T Consensus 180 v~~lNeLe~~dG~-lyanvw-----~s~~I~vIDp~TG~V~~ 215 (268)
T 3nok_A 180 VELINELECANGV-IYANIW-----HSSDVLEIDPATGTVVG 215 (268)
T ss_dssp CCCEEEEEEETTE-EEEEET-----TCSEEEEECTTTCBEEE
T ss_pred cccccccEEeCCE-EEEEEC-----CCCeEEEEeCCCCcEEE
Confidence 111 123344565 776321 24689999999876433
No 42
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=97.05 E-value=0.23 Score=47.95 Aligned_cols=189 Identities=13% Similarity=0.045 Sum_probs=97.9
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCC
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~ 234 (518)
++.+++.|+.+. .+..+|+.+.+-...-.. .+. .. .+++. -++..++.|+.++ .+.+||..+.
T Consensus 91 ~~~~l~s~s~D~------~i~lWd~~~~~~~~~~~~--~~~-~~-~~~~~spdg~~l~~g~~dg------~v~i~~~~~~ 154 (321)
T 3ow8_A 91 TLPIAASSSLDA------HIRLWDLENGKQIKSIDA--GPV-DA-WTLAFSPDSQYLATGTHVG------KVNIFGVESG 154 (321)
T ss_dssp SSSEEEEEETTS------EEEEEETTTTEEEEEEEC--CTT-CC-CCEEECTTSSEEEEECTTS------EEEEEETTTC
T ss_pred CCCEEEEEeCCC------cEEEEECCCCCEEEEEeC--CCc-cE-EEEEECCCCCEEEEEcCCC------cEEEEEcCCC
Confidence 455666776643 688899988764433221 111 11 12222 3456667766543 4778888776
Q ss_pred cEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCEEE
Q 010115 235 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWY 313 (518)
Q Consensus 235 ~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~iy 313 (518)
+-...- .. ......+++...+..+++.|+.++ .+..||+.+.+-...-.. ... .-.+++.. +++++
T Consensus 155 ~~~~~~---~~-~~~~v~~~~~spdg~~lasg~~dg-----~i~iwd~~~~~~~~~~~~--h~~--~v~~l~~spd~~~l 221 (321)
T 3ow8_A 155 KKEYSL---DT-RGKFILSIAYSPDGKYLASGAIDG-----IINIFDIATGKLLHTLEG--HAM--PIRSLTFSPDSQLL 221 (321)
T ss_dssp SEEEEE---EC-SSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEECC--CSS--CCCEEEECTTSCEE
T ss_pred ceeEEe---cC-CCceEEEEEECCCCCEEEEEcCCC-----eEEEEECCCCcEEEEEcc--cCC--ceeEEEEcCCCCEE
Confidence 543321 11 111122333434433677776654 489999987753322111 011 11122222 66777
Q ss_pred EEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 314 IAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 314 v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
+.|+.++. +.+||+.+........ . -......+.+.. + +..++.|+.++ .+.+||+.+.+
T Consensus 222 ~s~s~dg~-----i~iwd~~~~~~~~~~~--~----h~~~v~~~~~sp-~-~~~l~s~s~D~----~v~iwd~~~~~ 281 (321)
T 3ow8_A 222 VTASDDGY-----IKIYDVQHANLAGTLS--G----HASWVLNVAFCP-D-DTHFVSSSSDK----SVKVWDVGTRT 281 (321)
T ss_dssp EEECTTSC-----EEEEETTTCCEEEEEC--C----CSSCEEEEEECT-T-SSEEEEEETTS----CEEEEETTTTE
T ss_pred EEEcCCCe-----EEEEECCCcceeEEEc--C----CCCceEEEEECC-C-CCEEEEEeCCC----cEEEEeCCCCE
Confidence 88876543 8899988766543221 0 011123333332 2 33566777654 57888877654
No 43
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.05 E-value=0.21 Score=50.41 Aligned_cols=226 Identities=12% Similarity=0.101 Sum_probs=117.2
Q ss_pred EEECCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcee
Q 010115 95 AVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVS 174 (518)
Q Consensus 95 ~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 174 (518)
...++..++.|+.+ ..+.+||..+.+-...-. .....-.++ ...+.+++.|+.+. .
T Consensus 125 ~~~~g~~l~sg~~d-----g~i~vwd~~~~~~~~~~~------------~h~~~v~~~-~~~~~~l~s~~~dg------~ 180 (445)
T 2ovr_B 125 LQFCGNRIVSGSDD-----NTLKVWSAVTGKCLRTLV------------GHTGGVWSS-QMRDNIIISGSTDR------T 180 (445)
T ss_dssp EEEETTEEEEEETT-----SCEEEEETTTCCEEEECC------------CCSSCEEEE-EEETTEEEEEETTS------C
T ss_pred EEEcCCEEEEEECC-----CcEEEEECCCCcEEEEEc------------CCCCCEEEE-EecCCEEEEEeCCC------e
Confidence 33455566667654 468899988764322111 111111223 33455666676643 5
Q ss_pred EEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEE
Q 010115 175 VWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (518)
Q Consensus 175 v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~ 254 (518)
+..||..+++-...-. .....-.....++..++.|+.++ .+.+||+.+.+-...-. .......+
T Consensus 181 i~vwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~l~s~s~dg------~i~~wd~~~~~~~~~~~-----~~~~~v~~ 244 (445)
T 2ovr_B 181 LKVWNAETGECIHTLY-----GHTSTVRCMHLHEKRVVSGSRDA------TLRVWDIETGQCLHVLM-----GHVAAVRC 244 (445)
T ss_dssp EEEEETTTTEEEEEEC-----CCSSCEEEEEEETTEEEEEETTS------EEEEEESSSCCEEEEEE-----CCSSCEEE
T ss_pred EEEEECCcCcEEEEEC-----CCCCcEEEEEecCCEEEEEeCCC------EEEEEECCCCcEEEEEc-----CCcccEEE
Confidence 8889998876433221 11111122233445566666543 48889988765433211 11112223
Q ss_pred EEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCCCcCeEEEEECCC
Q 010115 255 ALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILK 334 (518)
Q Consensus 255 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~ 334 (518)
+..++. +++.|+.++ .+..||+.+.+-...-. .......++..++..++.|+.++. +.+||+.+
T Consensus 245 ~~~~~~-~l~~~~~dg-----~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~l~~~~~d~~-----i~i~d~~~ 308 (445)
T 2ovr_B 245 VQYDGR-RVVSGAYDF-----MVKVWDPETETCLHTLQ-----GHTNRVYSLQFDGIHVVSGSLDTS-----IRVWDVET 308 (445)
T ss_dssp EEECSS-CEEEEETTS-----CEEEEEGGGTEEEEEEC-----CCSSCEEEEEECSSEEEEEETTSC-----EEEEETTT
T ss_pred EEECCC-EEEEEcCCC-----EEEEEECCCCcEeEEec-----CCCCceEEEEECCCEEEEEeCCCe-----EEEEECCC
Confidence 344666 667776544 48899987765322211 111112333447777788776544 89999987
Q ss_pred CceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 335 GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 335 ~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
.+-..... .. .......... + .+++.|+.++ .+.+||+.+.+
T Consensus 309 ~~~~~~~~--~~----~~~v~~~~~~--~--~~l~~~~~dg----~i~vwd~~~~~ 350 (445)
T 2ovr_B 309 GNCIHTLT--GH----QSLTSGMELK--D--NILVSGNADS----TVKIWDIKTGQ 350 (445)
T ss_dssp CCEEEEEC--CC----CSCEEEEEEE--T--TEEEEEETTS----CEEEEETTTCC
T ss_pred CCEEEEEc--CC----cccEEEEEEe--C--CEEEEEeCCC----eEEEEECCCCc
Confidence 66443221 11 1111222222 2 2566676553 68889887654
No 44
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.04 E-value=0.23 Score=47.19 Aligned_cols=193 Identities=12% Similarity=0.104 Sum_probs=98.0
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCceeEE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~ 176 (518)
++++++.|+.+ ..+.+||..+.+-...-. .....-.++... ++.+++.|+.+. .+.
T Consensus 76 ~~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~l~s~~~d~------~i~ 132 (312)
T 4ery_A 76 DSNLLVSASDD-----KTLKIWDVSSGKCLKTLK------------GHSNYVFCCNFNPQSNLIVSGSFDE------SVR 132 (312)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTCCEEEEEE------------CCSSCEEEEEECSSSSEEEEEETTS------CEE
T ss_pred CCCEEEEECCC-----CEEEEEECCCCcEEEEEc------------CCCCCEEEEEEcCCCCEEEEEeCCC------cEE
Confidence 45677777754 468889988765332211 000011122221 456667777643 588
Q ss_pred EEECCCCcEEEeeecCCCCCCCcc-eEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEE
Q 010115 177 TFDTETECWSVVEAKGDIPVARSG-HTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (518)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~ 254 (518)
.||+.+.+-...- +..... .++.. -++.+++.|+.++ .+.+||+.+.+....-. . ........+
T Consensus 133 iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~~wd~~~~~~~~~~~--~-~~~~~~~~~ 198 (312)
T 4ery_A 133 IWDVKTGKCLKTL-----PAHSDPVSAVHFNRDGSLIVSSSYDG------LCRIWDTASGQCLKTLI--D-DDNPPVSFV 198 (312)
T ss_dssp EEETTTCCEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTCCEEEEEC--C-SSCCCEEEE
T ss_pred EEECCCCEEEEEe-----cCCCCcEEEEEEcCCCCEEEEEeCCC------cEEEEECCCCceeeEEe--c-cCCCceEEE
Confidence 8999877643322 111111 12222 2456777777654 48889998776543221 1 111111122
Q ss_pred EEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEE-ECCEEEEEcccCCCCCcCeEEEEECC
Q 010115 255 ALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGTKWYIAGGGSRKKRHAETLIFDIL 333 (518)
Q Consensus 255 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~ 333 (518)
+...+..+++.|+.++ .+..||..+.+-...-.. ............. .++.+++.|+.++. +.+||+.
T Consensus 199 ~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~sg~~dg~-----i~vwd~~ 267 (312)
T 4ery_A 199 KFSPNGKYILAATLDN-----TLKLWDYSKGKCLKTYTG-HKNEKYCIFANFSVTGGKWIVSGSEDNL-----VYIWNLQ 267 (312)
T ss_dssp EECTTSSEEEEEETTT-----EEEEEETTTTEEEEEECS-SCCSSSCCCEEEECSSSCEEEECCTTSC-----EEEEETT
T ss_pred EECCCCCEEEEEcCCC-----eEEEEECCCCcEEEEEEe-cCCceEEEEEEEEeCCCcEEEEECCCCE-----EEEEECC
Confidence 3333332566665543 589999887653332211 1111111112222 25677777776544 8899998
Q ss_pred CCceE
Q 010115 334 KGEWS 338 (518)
Q Consensus 334 ~~~W~ 338 (518)
+.+-.
T Consensus 268 ~~~~~ 272 (312)
T 4ery_A 268 TKEIV 272 (312)
T ss_dssp TCCEE
T ss_pred Cchhh
Confidence 76543
No 45
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.90 E-value=0.034 Score=52.38 Aligned_cols=159 Identities=9% Similarity=-0.107 Sum_probs=99.6
Q ss_pred cceEEEEECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEE
Q 010115 148 RGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLH 227 (518)
Q Consensus 148 ~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 227 (518)
+..++...++.||+..|..+ .+.++|+++++-.... ++..-++.+++..+++||+.... .+.++
T Consensus 56 ftqGL~~~~~~Ly~stG~~g------~v~~iD~~Tgkv~~~~----l~~~~FgeGit~~g~~Ly~ltw~------~~~v~ 119 (268)
T 3nok_A 56 FTQGLVFHQGHFFESTGHQG------TLRQLSLESAQPVWME----RLGNIFAEGLASDGERLYQLTWT------EGLLF 119 (268)
T ss_dssp CEEEEEEETTEEEEEETTTT------EEEECCSSCSSCSEEE----ECTTCCEEEEEECSSCEEEEESS------SCEEE
T ss_pred ccceEEEECCEEEEEcCCCC------EEEEEECCCCcEEeEE----CCCCcceeEEEEeCCEEEEEEcc------CCEEE
Confidence 34667777999999999754 3889999998743322 33344566788889999998543 35699
Q ss_pred EEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcc-eEEE
Q 010115 228 MFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG-CCGV 306 (518)
Q Consensus 228 ~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~-~~~~ 306 (518)
+||+++.+-..-- +.+-.+.+++. +++.||+.-| .+.++.+|+++.+-..--..+..+.+... -.+.
T Consensus 120 V~D~~Tl~~~~ti-----~~~~eGwGLt~-Dg~~L~vSdG------s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe 187 (268)
T 3nok_A 120 TWSGMPPQRERTT-----RYSGEGWGLCY-WNGKLVRSDG------GTMLTFHEPDGFALVGAVQVKLRGQPVELINELE 187 (268)
T ss_dssp EEETTTTEEEEEE-----ECSSCCCCEEE-ETTEEEEECS------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EEECCcCcEEEEE-----eCCCceeEEec-CCCEEEEECC------CCEEEEEcCCCCeEEEEEEeCCCCcccccccccE
Confidence 9999887654321 11223444554 4555888765 34799999998654332221111222111 1234
Q ss_pred EECCEEEEEcccCCCCCcCeEEEEECCCCceEE
Q 010115 307 LCGTKWYIAGGGSRKKRHAETLIFDILKGEWSV 339 (518)
Q Consensus 307 ~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 339 (518)
..+++||+--- ..++|.+.|+++++-..
T Consensus 188 ~~dG~lyanvw-----~s~~I~vIDp~TG~V~~ 215 (268)
T 3nok_A 188 CANGVIYANIW-----HSSDVLEIDPATGTVVG 215 (268)
T ss_dssp EETTEEEEEET-----TCSEEEEECTTTCBEEE
T ss_pred EeCCEEEEEEC-----CCCeEEEEeCCCCcEEE
Confidence 45889886321 23679999999986544
No 46
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=96.79 E-value=0.41 Score=46.03 Aligned_cols=242 Identities=14% Similarity=0.022 Sum_probs=124.0
Q ss_pred CCEEEEEcCcCC-CCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcee
Q 010115 98 GNKMIVVGGESG-NGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVS 174 (518)
Q Consensus 98 ~~~lyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 174 (518)
++.+|+...... ......++++|+.+.+-...-.. ... -+.++.. ++.+|+.+... ..
T Consensus 52 g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~------------~~~-~~~~~~s~dg~~l~v~~~~~------~~ 112 (353)
T 3vgz_A 52 ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN------------DLK-PFGATINNTTQTLWFGNTVN------SA 112 (353)
T ss_dssp TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE------------SSC-CCSEEEETTTTEEEEEETTT------TE
T ss_pred CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec------------CCC-cceEEECCCCCEEEEEecCC------CE
Confidence 356777653211 11245789999988754433221 011 1223332 45688876643 26
Q ss_pred EEEEECCCCcEEEeeecCCCCC-----CCcceEEEEE--CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCC
Q 010115 175 VWTFDTETECWSVVEAKGDIPV-----ARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPS 247 (518)
Q Consensus 175 v~~yd~~t~~W~~~~~~~~~p~-----~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~ 247 (518)
++.+|+.+.+-......+.... +..-+.++.. ++.+|+.+... -..++++|+.+.+-...- ...
T Consensus 113 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~~i~~~d~~~~~~~~~~---~~~- 183 (353)
T 3vgz_A 113 VTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK-----ESVIWVVDGGNIKLKTAI---QNT- 183 (353)
T ss_dssp EEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS-----SCEEEEEETTTTEEEEEE---CCC-
T ss_pred EEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC-----CceEEEEcCCCCceEEEe---cCC-
Confidence 9999999887433322111110 1112334443 35677765322 145999999877654432 111
Q ss_pred CCCCcEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEcccCCCCCc
Q 010115 248 PRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRH 324 (518)
Q Consensus 248 ~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~ 324 (518)
...-+.++.. +++.+|+... .+.++.+|+.+.+-......+.........+++.. ++.+|+.... .
T Consensus 184 ~~~~~~~~~s~dg~~l~~~~~------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-----~ 252 (353)
T 3vgz_A 184 GKMSTGLALDSEGKRLYTTNA------DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK-----A 252 (353)
T ss_dssp CTTCCCCEEETTTTEEEEECT------TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS-----S
T ss_pred CCccceEEECCCCCEEEEEcC------CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC-----C
Confidence 1111223333 4565666543 24799999988764433322111111112223333 4567776532 2
Q ss_pred CeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCCc
Q 010115 325 AETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 391 (518)
Q Consensus 325 ~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~w 391 (518)
+.+++||+.+.+.......+ .+ .. +.+. .+...+|+.+..+ +.+.++|+.+.+.
T Consensus 253 ~~v~~~d~~~~~~~~~~~~~----~~---~~-~~~s-~dg~~l~v~~~~~----~~v~~~d~~~~~~ 306 (353)
T 3vgz_A 253 AEVLVVDTRNGNILAKVAAP----ES---LA-VLFN-PARNEAYVTHRQA----GKVSVIDAKSYKV 306 (353)
T ss_dssp SEEEEEETTTCCEEEEEECS----SC---CC-EEEE-TTTTEEEEEETTT----TEEEEEETTTTEE
T ss_pred CEEEEEECCCCcEEEEEEcC----CC---ce-EEEC-CCCCEEEEEECCC----CeEEEEECCCCeE
Confidence 56999999887765433211 11 22 3332 3445677765433 3789999877653
No 47
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=96.78 E-value=0.55 Score=47.40 Aligned_cols=147 Identities=10% Similarity=0.090 Sum_probs=78.9
Q ss_pred ECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC
Q 010115 206 ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM 285 (518)
Q Consensus 206 ~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~ 285 (518)
.++.+++.|+.++ .+.+||+.+.+-...- .... ..-.+++...+...++.|+.++ .+..||+.+.
T Consensus 278 ~~~~~l~~~~~d~------~i~vwd~~~~~~~~~~---~~~~-~~v~~~~~~~~~~~l~sg~~dg-----~i~vwd~~~~ 342 (464)
T 3v7d_B 278 GHGNIVVSGSYDN------TLIVWDVAQMKCLYIL---SGHT-DRIYSTIYDHERKRCISASMDT-----TIRIWDLENG 342 (464)
T ss_dssp EETTEEEEEETTS------CEEEEETTTTEEEEEE---CCCS-SCEEEEEEETTTTEEEEEETTS-----CEEEEETTTT
T ss_pred CCCCEEEEEeCCC------eEEEEECCCCcEEEEe---cCCC-CCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCC
Confidence 3455666666543 4889999876644332 1111 1122333443332667776554 4999999876
Q ss_pred eEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCcc
Q 010115 286 IWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKD 365 (518)
Q Consensus 286 ~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~ 365 (518)
+-...-. .......++..++..++.|+.++ .+.+||+.+..-...... ......+.+...+
T Consensus 343 ~~~~~~~-----~h~~~v~~~~~~~~~l~s~s~dg-----~v~vwd~~~~~~~~~~~~-------~~~~~~~~~~~~~-- 403 (464)
T 3v7d_B 343 ELMYTLQ-----GHTALVGLLRLSDKFLVSAAADG-----SIRGWDANDYSRKFSYHH-------TNLSAITTFYVSD-- 403 (464)
T ss_dssp EEEEEEC-----CCSSCEEEEEECSSEEEEEETTS-----EEEEEETTTCCEEEEEEC-------TTCCCEEEEEECS--
T ss_pred cEEEEEe-----CCCCcEEEEEEcCCEEEEEeCCC-----cEEEEECCCCceeeeecC-------CCCccEEEEEeCC--
Confidence 5332211 11122234445677777777654 488999987653332211 1112333343333
Q ss_pred EEEEEcCCCCCCCCcEEEEEcccCCc
Q 010115 366 FLVAFGGIKKEPSNQVEVLSIEKNES 391 (518)
Q Consensus 366 ~l~v~GG~~~~~~~~v~~yd~~~~~w 391 (518)
.+++.|+ + +.+.+||+.+.+-
T Consensus 404 ~~l~~~~-d----g~i~iwd~~~g~~ 424 (464)
T 3v7d_B 404 NILVSGS-E----NQFNIYNLRSGKL 424 (464)
T ss_dssp SEEEEEE-T----TEEEEEETTTCCE
T ss_pred CEEEEec-C----CeEEEEECCCCcE
Confidence 3566666 2 2799999988763
No 48
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=96.77 E-value=0.38 Score=45.46 Aligned_cols=255 Identities=7% Similarity=-0.057 Sum_probs=131.9
Q ss_pred CCCCeEEeccCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccc
Q 010115 72 NSENWMVLSIAGDKPIPRFNHAAAVI--GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRG 149 (518)
Q Consensus 72 ~~~~W~~l~~~~~~p~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~ 149 (518)
...+.+.+... .....+.+.. ++.||+.+... ..+++||+.+. .+..... ...-
T Consensus 16 ~~~~~~~l~~~-----~~~~eg~~~d~~g~~l~~~~~~~-----~~i~~~~~~~~-~~~~~~~-------------~~~~ 71 (296)
T 3e5z_A 16 AGAEARRLADG-----FTWTEGPVYVPARSAVIFSDVRQ-----NRTWAWSDDGQ-LSPEMHP-------------SHHQ 71 (296)
T ss_dssp TTCCCEEEECC-----CSSEEEEEEEGGGTEEEEEEGGG-----TEEEEEETTSC-EEEEESS-------------CSSE
T ss_pred CCCcEEEEecC-----CccccCCeEeCCCCEEEEEeCCC-----CEEEEEECCCC-eEEEECC-------------CCCc
Confidence 45566666521 2333445544 34588877543 46899999987 5554321 1112
Q ss_pred eEEEEE-CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeec-CCCCCCCcceEEEEECCEEEEE----cccCC-----
Q 010115 150 HSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK-GDIPVARSGHTVVRASSVLILF----GGEDG----- 218 (518)
Q Consensus 150 ~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~-~~~p~~r~~~~~~~~~~~iyv~----GG~~~----- 218 (518)
.+++.. ++++|+..... ..+++||+.+++.+.+... ...+..+....++.-++.+|+. |....
T Consensus 72 ~~l~~~~dg~l~v~~~~~------~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~ 145 (296)
T 3e5z_A 72 NGHCLNKQGHLIACSHGL------RRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYG 145 (296)
T ss_dssp EEEEECTTCCEEEEETTT------TEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSC
T ss_pred ceeeECCCCcEEEEecCC------CeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccccc
Confidence 344443 56787764321 2589999988887766421 0111111122222235788886 43210
Q ss_pred --CCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcC-CCeE-EEeecC
Q 010115 219 --KRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFE-TMIW-TRIKIR 293 (518)
Q Consensus 219 --~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~-~~~W-~~v~~~ 293 (518)
.......++++|+. .+...+.. ....+ ...+.. +++ +++.... .+.+++||+. +.+. ......
T Consensus 146 ~~~~~~~~~l~~~~~~-g~~~~~~~--~~~~~---~gi~~s~dg~-~lv~~~~-----~~~i~~~~~~~~g~~~~~~~~~ 213 (296)
T 3e5z_A 146 GEMELPGRWVFRLAPD-GTLSAPIR--DRVKP---NGLAFLPSGN-LLVSDTG-----DNATHRYCLNARGETEYQGVHF 213 (296)
T ss_dssp CCCCSSSCEEEEECTT-SCEEEEEC--CCSSE---EEEEECTTSC-EEEEETT-----TTEEEEEEECSSSCEEEEEEEE
T ss_pred ccccCCCcEEEEECCC-CCEEEeec--CCCCC---ccEEECCCCC-EEEEeCC-----CCeEEEEEECCCCcCcCCCeEe
Confidence 01113479999987 55555531 22111 233443 344 4454432 2469999986 4555 211111
Q ss_pred CCCCCCCcceEEEEE-CCEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcC
Q 010115 294 GFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGG 372 (518)
Q Consensus 294 ~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG 372 (518)
....... .+++.. +++||+..+ ..+.+||++......+.. + .. -..+++...+...||+...
T Consensus 214 -~~~~~~p-~~i~~d~~G~l~v~~~-------~~v~~~~~~g~~~~~~~~-~----~~---~~~~~f~~~d~~~L~v~t~ 276 (296)
T 3e5z_A 214 -TVEPGKT-DGLRVDAGGLIWASAG-------DGVHVLTPDGDELGRVLT-P----QT---TSNLCFGGPEGRTLYMTVS 276 (296)
T ss_dssp -CCSSSCC-CSEEEBTTSCEEEEET-------TEEEEECTTSCEEEEEEC-S----SC---CCEEEEESTTSCEEEEEET
T ss_pred -eCCCCCC-CeEEECCCCCEEEEcC-------CeEEEECCCCCEEEEEEC-C----CC---ceeEEEECCCCCEEEEEcC
Confidence 0011111 123333 678888761 459999998666555542 1 11 2334443334456776543
Q ss_pred CCCCCCCcEEEEEcccCCc
Q 010115 373 IKKEPSNQVEVLSIEKNES 391 (518)
Q Consensus 373 ~~~~~~~~v~~yd~~~~~w 391 (518)
+.++.+++++..-
T Consensus 277 ------~~l~~~~~~~~~~ 289 (296)
T 3e5z_A 277 ------TEFWSIETNVRGL 289 (296)
T ss_dssp ------TEEEEEECSCCBC
T ss_pred ------CeEEEEEcccccc
Confidence 2689999887763
No 49
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=96.77 E-value=0.36 Score=45.16 Aligned_cols=227 Identities=7% Similarity=-0.038 Sum_probs=115.9
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCceeEE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~ 176 (518)
++.+|+..... ..+++||+. ........ +.....-++++.. ++.+|+..... ..++
T Consensus 67 ~g~l~v~~~~~-----~~i~~~~~~-g~~~~~~~-----------~~~~~~~~~i~~~~~g~l~v~~~~~------~~i~ 123 (299)
T 2z2n_A 67 DGEVWFTENAA-----NKIGRITKK-GIIKEYTL-----------PNPDSAPYGITEGPNGDIWFTEMNG------NRIG 123 (299)
T ss_dssp TSCEEEEETTT-----TEEEEECTT-SCEEEEEC-----------SSTTCCEEEEEECTTSCEEEEETTT------TEEE
T ss_pred CCCEEEeCCCC-----CeEEEECCC-CcEEEEeC-----------CCcCCCceeeEECCCCCEEEEecCC------ceEE
Confidence 46788765322 358888886 44444332 1111122444444 57888875332 2589
Q ss_pred EEECCCCcEEEeeecCCCCC-CCcceEEEEE-CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEE
Q 010115 177 TFDTETECWSVVEAKGDIPV-ARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (518)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~-~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~ 254 (518)
++|+ +.+...... +. ...-..++.. ++.+|+.... ...+++||+ +.+.......... ..-..+
T Consensus 124 ~~d~-~g~~~~~~~----~~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~~~~~~---~~~~~i 188 (299)
T 2z2n_A 124 RITD-DGKIREYEL----PNKGSYPSFITLGSDNALWFTENQ------NNAIGRITE-SGDITEFKIPTPA---SGPVGI 188 (299)
T ss_dssp EECT-TCCEEEEEC----SSTTCCEEEEEECTTSCEEEEETT------TTEEEEECT-TCCEEEEECSSTT---CCEEEE
T ss_pred EECC-CCCEEEecC----CCCCCCCceEEEcCCCCEEEEeCC------CCEEEEEcC-CCcEEEeeCCCCC---CcceeE
Confidence 9998 666665542 21 1222344443 4688886421 246899999 7777765321111 111234
Q ss_pred EEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCCCcCeEEEEECC
Q 010115 255 ALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDIL 333 (518)
Q Consensus 255 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~ 333 (518)
+...+..+|+.... .+.+.+||+ +.++..+.... ....-.+++.. ++++|+..... +.+.+||+
T Consensus 189 ~~~~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~d~- 253 (299)
T 2z2n_A 189 TKGNDDALWFVEII-----GNKIGRITT-SGEITEFKIPT---PNARPHAITAGAGIDLWFTEWGA-----NKIGRLTS- 253 (299)
T ss_dssp EECTTSSEEEEETT-----TTEEEEECT-TCCEEEEECSS---TTCCEEEEEECSTTCEEEEETTT-----TEEEEEET-
T ss_pred EECCCCCEEEEccC-----CceEEEECC-CCcEEEEECCC---CCCCceeEEECCCCCEEEeccCC-----ceEEEECC-
Confidence 44333337776432 246999999 77776653221 11111233332 56888875221 45899999
Q ss_pred CCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 334 KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 334 ~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
+.+...... +.. ...-.+++. . ++.||+.... +.+.+|++.+.+
T Consensus 254 ~g~~~~~~~-~~~---~~~~~~i~~--~--~g~l~v~~~~-----~~l~~~~~~~~~ 297 (299)
T 2z2n_A 254 NNIIEEYPI-QIK---SAEPHGICF--D--GETIWFAMEC-----DKIGKLTLIKDN 297 (299)
T ss_dssp TTEEEEEEC-SSS---SCCEEEEEE--C--SSCEEEEETT-----TEEEEEEEC---
T ss_pred CCceEEEeC-CCC---CCccceEEe--c--CCCEEEEecC-----CcEEEEEcCccc
Confidence 455554431 111 111123332 2 3557665431 378889887653
No 50
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=96.72 E-value=0.19 Score=50.68 Aligned_cols=225 Identities=12% Similarity=0.113 Sum_probs=115.6
Q ss_pred CcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeec
Q 010115 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 191 (518)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 191 (518)
..++++|.....-..+... .. ....+.+ +++.+++++.... ...++.+|+.+++...+..
T Consensus 159 ~~i~i~d~~g~~~~~l~~~------------~~--~v~~~~~Spdg~~la~~s~~~~---~~~i~~~d~~tg~~~~l~~- 220 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRS------------PQ--PLMSPAWSPDGSKLAYVTFESG---RSALVIQTLANGAVRQVAS- 220 (415)
T ss_dssp EEEEEEETTSCSCEEEEEE------------SS--CEEEEEECTTSSEEEEEECTTS---SCEEEEEETTTCCEEEEEC-
T ss_pred ceEEEEcCCCCCCEEEeCC------------CC--cceeeEEcCCCCEEEEEEecCC---CcEEEEEECCCCcEEEeec-
Confidence 5789999876554444321 00 1112222 4555555554321 2479999999998776653
Q ss_pred CCCCCCCcceEEEEE-CC-EEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEE-CCcEEEEEcCC
Q 010115 192 GDIPVARSGHTVVRA-SS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGS 268 (518)
Q Consensus 192 ~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~ 268 (518)
.+. ...+.+.. ++ .|++.+..+. ...++++|+.+.+...+. ..+ ......+.. +++ .+++++.
T Consensus 221 --~~~--~~~~~~~spdg~~la~~~~~~g----~~~i~~~d~~~~~~~~l~---~~~--~~~~~~~~spdg~-~l~~~s~ 286 (415)
T 2hqs_A 221 --FPR--HNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVT---DGR--SNNTEPTWFPDSQ-NLAFTSD 286 (415)
T ss_dssp --CSS--CEEEEEECTTSSEEEEEECTTS----SCEEEEEETTTCCEEECC---CCS--SCEEEEEECTTSS-EEEEEEC
T ss_pred --CCC--cccCEEEcCCCCEEEEEEecCC----CceEEEEECCCCCEEeCc---CCC--CcccceEECCCCC-EEEEEEC
Confidence 221 22223332 34 4554544333 246999999988876664 111 111223333 345 3444432
Q ss_pred CCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCC
Q 010115 269 SKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSS 347 (518)
Q Consensus 269 ~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~ 347 (518)
... ...+|.+|+.+.+-..+... .....+.+.. +++.+++++.... ...++++|+.+.+...+...
T Consensus 287 ~~g--~~~i~~~d~~~~~~~~l~~~-----~~~~~~~~~spdG~~l~~~~~~~g--~~~i~~~d~~~~~~~~l~~~---- 353 (415)
T 2hqs_A 287 QAG--RPQVYKVNINGGAPQRITWE-----GSQNQDADVSSDGKFMVMVSSNGG--QQHIAKQDLATGGVQVLSST---- 353 (415)
T ss_dssp TTS--SCEEEEEETTSSCCEECCCS-----SSEEEEEEECTTSSEEEEEEECSS--CEEEEEEETTTCCEEECCCS----
T ss_pred CCC--CcEEEEEECCCCCEEEEecC-----CCcccCeEECCCCCEEEEEECcCC--ceEEEEEECCCCCEEEecCC----
Confidence 111 24799999988765544322 1122222222 5555555443221 35689999999888765421
Q ss_pred CCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 348 VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 348 ~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
. ......+..++ . .+++++..+. ...++++|+....
T Consensus 354 --~--~~~~~~~spdg-~-~l~~~s~~~~-~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 354 --F--LDETPSLAPNG-T-MVIYSSSQGM-GSVLNLVSTDGRF 389 (415)
T ss_dssp --S--SCEEEEECTTS-S-EEEEEEEETT-EEEEEEEETTSCC
T ss_pred --C--CcCCeEEcCCC-C-EEEEEEcCCC-ccEEEEEECCCCc
Confidence 1 22334443323 3 4445543221 2368888887654
No 51
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.69 E-value=0.24 Score=49.22 Aligned_cols=233 Identities=11% Similarity=0.127 Sum_probs=115.5
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCCCceeEEE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWT 177 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 177 (518)
++.+++.|+.+ ..+.+||..+.+....-. ... ..-..+.+++.+++.|+.+. .+..
T Consensus 145 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~------------~~~-~~v~~~~~~~~~l~~~~~dg------~i~i 200 (401)
T 4aez_A 145 DGSFLSVGLGN-----GLVDIYDVESQTKLRTMA------------GHQ-ARVGCLSWNRHVLSSGSRSG------AIHH 200 (401)
T ss_dssp TSSEEEEEETT-----SCEEEEETTTCCEEEEEC------------CCS-SCEEEEEEETTEEEEEETTS------EEEE
T ss_pred CCCEEEEECCC-----CeEEEEECcCCeEEEEec------------CCC-CceEEEEECCCEEEEEcCCC------CEEE
Confidence 45566666644 368899988765433221 011 11223344666777777643 6888
Q ss_pred EECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEE
Q 010115 178 FDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAAL 256 (518)
Q Consensus 178 yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~ 256 (518)
||..+..-...... .....-.++... ++.+++.|+.++ .+.+||+.+.+-...- . .....-.+++.
T Consensus 201 ~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~d~------~v~iwd~~~~~~~~~~---~-~~~~~v~~~~~ 267 (401)
T 4aez_A 201 HDVRIANHQIGTLQ---GHSSEVCGLAWRSDGLQLASGGNDN------VVQIWDARSSIPKFTK---T-NHNAAVKAVAW 267 (401)
T ss_dssp EETTSSSCEEEEEE---CCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTCSSEEEEE---C-CCSSCCCEEEE
T ss_pred EecccCcceeeEEc---CCCCCeeEEEEcCCCCEEEEEeCCC------eEEEccCCCCCccEEe---c-CCcceEEEEEE
Confidence 99874332211110 111111222222 566777777654 4889999876543321 1 11112223444
Q ss_pred EC-CcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE--CC-EEEEEcccCCCCCcCeEEEEEC
Q 010115 257 YD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GT-KWYIAGGGSRKKRHAETLIFDI 332 (518)
Q Consensus 257 ~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~ 332 (518)
.. +..+++.||-.. -..+..||..+.+-...-.. .. . ...+.+ ++ .+++.+|... ..+.+||.
T Consensus 268 ~p~~~~ll~~~~gs~---d~~i~i~d~~~~~~~~~~~~---~~--~-v~~~~~s~~~~~l~~~~g~~d----g~i~v~~~ 334 (401)
T 4aez_A 268 CPWQSNLLATGGGTM---DKQIHFWNAATGARVNTVDA---GS--Q-VTSLIWSPHSKEIMSTHGFPD----NNLSIWSY 334 (401)
T ss_dssp CTTSTTEEEEECCTT---TCEEEEEETTTCCEEEEEEC---SS--C-EEEEEECSSSSEEEEEECTTT----CEEEEEEE
T ss_pred CCCCCCEEEEecCCC---CCEEEEEECCCCCEEEEEeC---CC--c-EEEEEECCCCCeEEEEeecCC----CcEEEEec
Confidence 43 333677664111 13599999887654433222 11 1 222222 34 4554444332 35889998
Q ss_pred CCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 333 LKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 333 ~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
.+.....+...... ......+.+.. + +.+++.||.++ .+.+|++.+.+
T Consensus 335 ~~~~~~~~~~~~~h----~~~v~~~~~s~-d-g~~l~s~~~dg----~i~iw~~~~~~ 382 (401)
T 4aez_A 335 SSSGLTKQVDIPAH----DTRVLYSALSP-D-GRILSTAASDE----NLKFWRVYDGD 382 (401)
T ss_dssp ETTEEEEEEEEECC----SSCCCEEEECT-T-SSEEEEECTTS----EEEEEECCC--
T ss_pred CCccceeEEEecCC----CCCEEEEEECC-C-CCEEEEEeCCC----cEEEEECCCCc
Confidence 88776665321111 11122333332 2 33566666543 68888887765
No 52
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.65 E-value=0.57 Score=46.44 Aligned_cols=220 Identities=17% Similarity=0.158 Sum_probs=112.3
Q ss_pred CcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeec
Q 010115 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 191 (518)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 191 (518)
..+++||..+......... . ....-..+.+ ++.+++.|+.++ .+..||+.+.+....-.
T Consensus 113 ~~v~lw~~~~~~~~~~~~~----------~--~~~~v~~v~~s~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~- 173 (401)
T 4aez_A 113 RNVYVWNADSGSVSALAET----------D--ESTYVASVKWSHDGSFLSVGLGNG------LVDIYDVESQTKLRTMA- 173 (401)
T ss_dssp TEEEEEETTTCCEEEEEEC----------C--TTCCEEEEEECTTSSEEEEEETTS------CEEEEETTTCCEEEEEC-
T ss_pred CeEEEeeCCCCcEeEeeec----------C--CCCCEEEEEECCCCCEEEEECCCC------eEEEEECcCCeEEEEec-
Confidence 4689999988876655431 1 1111222233 556667766543 58889998876443321
Q ss_pred CCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCc--EEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCC
Q 010115 192 GDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSS 269 (518)
Q Consensus 192 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~ 269 (518)
.....-..+..++.+++.|+.++ .+.+||+.... -..+. . ....-.+++...+..+++.|+.+
T Consensus 174 ----~~~~~v~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~---~--~~~~v~~~~~~~~~~~l~s~~~d 238 (401)
T 4aez_A 174 ----GHQARVGCLSWNRHVLSSGSRSG------AIHHHDVRIANHQIGTLQ---G--HSSEVCGLAWRSDGLQLASGGND 238 (401)
T ss_dssp ----CCSSCEEEEEEETTEEEEEETTS------EEEEEETTSSSCEEEEEE---C--CSSCEEEEEECTTSSEEEEEETT
T ss_pred ----CCCCceEEEEECCCEEEEEcCCC------CEEEEecccCcceeeEEc---C--CCCCeeEEEEcCCCCEEEEEeCC
Confidence 11112222333566777776553 47888987432 22221 1 11112233333333367777765
Q ss_pred CCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCC
Q 010115 270 KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSS 347 (518)
Q Consensus 270 ~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~ 347 (518)
+ .+..||+.+..-...-. .....-.+++.. +..+++.||.+.+ ..+.+||+.+.+-......
T Consensus 239 ~-----~v~iwd~~~~~~~~~~~----~~~~~v~~~~~~p~~~~ll~~~~gs~d---~~i~i~d~~~~~~~~~~~~---- 302 (401)
T 4aez_A 239 N-----VVQIWDARSSIPKFTKT----NHNAAVKAVAWCPWQSNLLATGGGTMD---KQIHFWNAATGARVNTVDA---- 302 (401)
T ss_dssp S-----CEEEEETTCSSEEEEEC----CCSSCCCEEEECTTSTTEEEEECCTTT---CEEEEEETTTCCEEEEEEC----
T ss_pred C-----eEEEccCCCCCccEEec----CCcceEEEEEECCCCCCEEEEecCCCC---CEEEEEECCCCCEEEEEeC----
Confidence 4 58999987754322211 111112233333 4567777752221 4589999987765443221
Q ss_pred CCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 348 VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 348 ~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
......+.+.. +...|++.+|... +.+.+||+.+.+
T Consensus 303 ---~~~v~~~~~s~-~~~~l~~~~g~~d---g~i~v~~~~~~~ 338 (401)
T 4aez_A 303 ---GSQVTSLIWSP-HSKEIMSTHGFPD---NNLSIWSYSSSG 338 (401)
T ss_dssp ---SSCEEEEEECS-SSSEEEEEECTTT---CEEEEEEEETTE
T ss_pred ---CCcEEEEEECC-CCCeEEEEeecCC---CcEEEEecCCcc
Confidence 11233444432 3345555545332 268888887654
No 53
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=96.62 E-value=0.25 Score=47.29 Aligned_cols=261 Identities=11% Similarity=0.058 Sum_probs=119.5
Q ss_pred CEEEEEcCcCCCCCCCcEEEEEcC--CCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcee
Q 010115 99 NKMIVVGGESGNGLLDDVQVLNFD--RFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVS 174 (518)
Q Consensus 99 ~~lyv~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 174 (518)
+.||+.+..+ ..+.+|++. +.+++.+... +... .-..++.. ++.+|+.+... ..
T Consensus 50 ~~l~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~----------~~~~-~~~~~~~s~dg~~l~~~~~~~------~~ 107 (343)
T 1ri6_A 50 RYLYVGVRPE-----FRVLAYRIAPDDGALTFAAES----------ALPG-SLTHISTDHQGQFVFVGSYNA------GN 107 (343)
T ss_dssp SEEEEEETTT-----TEEEEEEECTTTCCEEEEEEE----------ECSS-CCSEEEECTTSSEEEEEETTT------TE
T ss_pred CEEEEeecCC-----CeEEEEEecCCCCceeecccc----------ccCC-CCcEEEEcCCCCEEEEEecCC------Ce
Confidence 4466655421 467777776 6677765442 1111 11222222 34566654322 24
Q ss_pred EEEEECCCC-cEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCcccCcEEEEEcCC-CcEEEee--cCCCCCCC
Q 010115 175 VWTFDTETE-CWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS-LTWLPLH--CTGTGPSP 248 (518)
Q Consensus 175 v~~yd~~t~-~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t-~~W~~~~--~~g~~p~~ 248 (518)
+..||+... ....+.. .+....-+.++.. +..||+.+..+ ..+.+||+.+ .+...+. .. ..+..
T Consensus 108 i~~~d~~~~~~~~~~~~---~~~~~~~~~~~~s~dg~~l~~~~~~~------~~v~~~d~~~~~~~~~~~~~~~-~~~~~ 177 (343)
T 1ri6_A 108 VSVTRLEDGLPVGVVDV---VEGLDGCHSANISPDNRTLWVPALKQ------DRICLFTVSDDGHLVAQDPAEV-TTVEG 177 (343)
T ss_dssp EEEEEEETTEEEEEEEE---ECCCTTBCCCEECTTSSEEEEEEGGG------TEEEEEEECTTSCEEEEEEEEE-ECSTT
T ss_pred EEEEECCCCcccccccc---ccCCCCceEEEECCCCCEEEEecCCC------CEEEEEEecCCCceeeeccccc-ccCCC
Confidence 777776332 2222222 1111122333332 34677664222 3588999987 6665332 10 11111
Q ss_pred CCCcEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcC--CCeEEEeecCCCCCCC---CcceEEEEE--C-CEEEEEcccC
Q 010115 249 RSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFE--TMIWTRIKIRGFHPSP---RAGCCGVLC--G-TKWYIAGGGS 319 (518)
Q Consensus 249 r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~--~~~W~~v~~~~~~p~~---r~~~~~~~~--~-~~iyv~GG~~ 319 (518)
..-..++.. +++.+|+.+..+ +.+..||+. +.+++.+......+.. ......+.+ + ..||+.+...
T Consensus 178 ~~~~~~~~~pdg~~l~~~~~~~-----~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~ 252 (343)
T 1ri6_A 178 AGPRHMVFHPNEQYAYCVNELN-----SSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA 252 (343)
T ss_dssp CCEEEEEECTTSSEEEEEETTT-----TEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT
T ss_pred CCcceEEECCCCCEEEEEeCCC-----CEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCC
Confidence 111123333 344466665332 368888884 4554433221111221 111222333 3 3676655322
Q ss_pred CCCCcCeEEEEECC--CCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEE--EcccCCccccc
Q 010115 320 RKKRHAETLIFDIL--KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVL--SIEKNESSMGR 395 (518)
Q Consensus 320 ~~~~~~~v~~yd~~--~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~y--d~~~~~w~~~~ 395 (518)
+.+.+||+. +.+++.+...+... . ...+.+. .+...||+.++.+ +.+.+| |+++.++....
T Consensus 253 -----~~i~v~d~~~~~~~~~~~~~~~~~~----~-~~~~~~s-~dg~~l~~~~~~~----~~v~v~~~d~~~g~~~~~~ 317 (343)
T 1ri6_A 253 -----SLITVFSVSEDGSVLSKEGFQPTET----Q-PRGFNVD-HSGKYLIAAGQKS----HHISVYEIVGEQGLLHEKG 317 (343)
T ss_dssp -----TEEEEEEECTTSCCEEEEEEEECSS----S-CCCEEEC-TTSSEEEEECTTT----CEEEEEEEETTTTEEEEEE
T ss_pred -----CEEEEEEEcCCCCceEEeeeecCCC----c-cceEEEC-CCCCEEEEecCCC----CeEEEEEEcCCCceeeEcc
Confidence 358888887 56666654322111 1 1223333 2335566655433 245566 55555554331
Q ss_pred cCCCCCCCCceEeecCC
Q 010115 396 RSTPNAKGPGQLLFEKR 412 (518)
Q Consensus 396 ~~~~~~~~~~~~vfgG~ 412 (518)
....+..|..+.|...
T Consensus 318 -~~~~g~~p~~i~~~~~ 333 (343)
T 1ri6_A 318 -RYAVGQGPMWVVVNAH 333 (343)
T ss_dssp -EEECSSSCCEEEEEEE
T ss_pred -ccccCCCCeeEEEEcc
Confidence 2223356666666653
No 54
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.61 E-value=0.57 Score=45.43 Aligned_cols=251 Identities=12% Similarity=0.144 Sum_probs=127.7
Q ss_pred CCCCeEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCCcEEEEEcC-CCcEEEcccccccCCCCCCCCCCCccce
Q 010115 72 NSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFD-RFSWTAASSKLYLSPSSLPLKIPACRGH 150 (518)
Q Consensus 72 ~~~~W~~l~~~~~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~-~~~W~~~~~~~~~~~~~~~~~~~~r~~~ 150 (518)
...+|+.+......+ .....+++..++.+|+.|- . ..+++ ..+ ..+|+.+... ...+.. ..
T Consensus 64 gG~tW~~~~~~~~~~-~~~~~~i~~~~~~~~~~g~-~-----g~i~~-S~DgG~tW~~~~~~---------~~~~~~-~~ 125 (327)
T 2xbg_A 64 GGQTWEPRTLVLDHS-DYRFNSVSFQGNEGWIVGE-P-----PIMLH-TTDGGQSWSQIPLD---------PKLPGS-PR 125 (327)
T ss_dssp TTSSCEECCCCCSCC-CCEEEEEEEETTEEEEEEE-T-----TEEEE-ESSTTSSCEECCCC---------TTCSSC-EE
T ss_pred CCCCCeECCCCCCCC-CccEEEEEecCCeEEEEEC-C-----CeEEE-ECCCCCCceECccc---------cCCCCC-eE
Confidence 346899985211111 1223344455778888753 1 12333 333 4699998652 111222 23
Q ss_pred EEEE-ECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCcccCcEEE
Q 010115 151 SLIS-WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHM 228 (518)
Q Consensus 151 ~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~ 228 (518)
.++. -++.+|+.|... .+++-+-.-.+|+.+.. +....-+.++.. ++.+|++|- . ..+++
T Consensus 126 ~i~~~~~~~~~~~~~~g-------~v~~S~DgG~tW~~~~~----~~~~~~~~~~~~~~~~~~~~g~-~------G~~~~ 187 (327)
T 2xbg_A 126 LIKALGNGSAEMITNVG-------AIYRTKDSGKNWQALVQ----EAIGVMRNLNRSPSGEYVAVSS-R------GSFYS 187 (327)
T ss_dssp EEEEEETTEEEEEETTC-------CEEEESSTTSSEEEEEC----SCCCCEEEEEECTTSCEEEEET-T------SSEEE
T ss_pred EEEEECCCCEEEEeCCc-------cEEEEcCCCCCCEEeec----CCCcceEEEEEcCCCcEEEEEC-C------CcEEE
Confidence 3433 468888877421 36665444678999874 222333444443 456666652 2 22444
Q ss_pred EEcC-CCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcC-CCeEEEeecCCCCCCCCcceEEE
Q 010115 229 FDLK-SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFE-TMIWTRIKIRGFHPSPRAGCCGV 306 (518)
Q Consensus 229 yd~~-t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~-~~~W~~v~~~~~~p~~r~~~~~~ 306 (518)
-+-. -.+|+.+. .+.+...+.++...+..+|+.+.. ..+++.+.+ ..+|+.+... ..+.....++++
T Consensus 188 S~d~gG~tW~~~~----~~~~~~~~~~~~~~~g~~~~~~~~------G~~~~s~~D~G~tW~~~~~~-~~~~~~~~~~v~ 256 (327)
T 2xbg_A 188 TWEPGQTAWEPHN----RTTSRRLHNMGFTPDGRLWMIVNG------GKIAFSDPDNSENWGELLSP-LRRNSVGFLDLA 256 (327)
T ss_dssp EECTTCSSCEEEE----CCSSSCEEEEEECTTSCEEEEETT------TEEEEEETTEEEEECCCBCT-TSSCCSCEEEEE
T ss_pred EeCCCCCceeECC----CCCCCccceeEECCCCCEEEEeCC------ceEEEecCCCCCeeEeccCC-cccCCcceEEEE
Confidence 4322 57899985 233444555555444447776632 135555433 6789887531 112212223333
Q ss_pred EE-CCEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEE
Q 010115 307 LC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLS 385 (518)
Q Consensus 307 ~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd 385 (518)
.. ++.+|++|+. ..+++-.-...+|+.+.... . .+...+.++... .+.+++.|..+ .++.++
T Consensus 257 ~~~~~~~~~~g~~------g~i~~S~DgG~tW~~~~~~~-~--~~~~~~~v~~~~---~~~~~~~G~~G-----~i~~~~ 319 (327)
T 2xbg_A 257 YRTPNEVWLAGGA------GALLCSQDGGQTWQQDVDVK-K--VPSNFYKILFFS---PDQGFILGQKG-----ILLRYV 319 (327)
T ss_dssp ESSSSCEEEEEST------TCEEEESSTTSSCEECGGGT-T--SSSCCCEEEEEE---TTEEEEECSTT-----EEEEEC
T ss_pred ecCCCEEEEEeCC------CeEEEeCCCCcccEEcCccC-C--CCCCeEEEEEEC---CCceEEEcCCc-----eEEEEc
Confidence 33 5688888763 22555444568999876321 1 111223443332 34566666533 456554
Q ss_pred c
Q 010115 386 I 386 (518)
Q Consensus 386 ~ 386 (518)
.
T Consensus 320 ~ 320 (327)
T 2xbg_A 320 T 320 (327)
T ss_dssp C
T ss_pred C
Confidence 3
No 55
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=96.59 E-value=0.57 Score=45.09 Aligned_cols=225 Identities=10% Similarity=0.077 Sum_probs=113.7
Q ss_pred CEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEE-ECCEEEEEcCcCCCCCCceeEEE
Q 010115 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSGSDRVSVWT 177 (518)
Q Consensus 99 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~ 177 (518)
+.+++.|+.+ ..+.++|+.+.+-...-.. .+. .-.+++. -+++.++.|+... .+..
T Consensus 92 ~~~l~s~s~D-----~~i~lWd~~~~~~~~~~~~-----------~~~-~~~~~~~spdg~~l~~g~~dg------~v~i 148 (321)
T 3ow8_A 92 LPIAASSSLD-----AHIRLWDLENGKQIKSIDA-----------GPV-DAWTLAFSPDSQYLATGTHVG------KVNI 148 (321)
T ss_dssp SSEEEEEETT-----SEEEEEETTTTEEEEEEEC-----------CTT-CCCCEEECTTSSEEEEECTTS------EEEE
T ss_pred CCEEEEEeCC-----CcEEEEECCCCCEEEEEeC-----------CCc-cEEEEEECCCCCEEEEEcCCC------cEEE
Confidence 4466666654 4688899887654332210 000 1112222 2556667776543 5788
Q ss_pred EECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEE
Q 010115 178 FDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAAL 256 (518)
Q Consensus 178 yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~ 256 (518)
||..+.+-..... . ....-.+++. -+++.++.|+.++ .+.+||+.+.+-...- ..... .-.+++.
T Consensus 149 ~~~~~~~~~~~~~---~-~~~~v~~~~~spdg~~lasg~~dg------~i~iwd~~~~~~~~~~---~~h~~-~v~~l~~ 214 (321)
T 3ow8_A 149 FGVESGKKEYSLD---T-RGKFILSIAYSPDGKYLASGAIDG------IINIFDIATGKLLHTL---EGHAM-PIRSLTF 214 (321)
T ss_dssp EETTTCSEEEEEE---C-SSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEEEE---CCCSS-CCCEEEE
T ss_pred EEcCCCceeEEec---C-CCceEEEEEECCCCCEEEEEcCCC------eEEEEECCCCcEEEEE---cccCC-ceeEEEE
Confidence 8888776433221 1 1111122222 2466777777654 4889999877643321 11111 1123444
Q ss_pred ECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCCCcCeEEEEECCCC
Q 010115 257 YDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKG 335 (518)
Q Consensus 257 ~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~ 335 (518)
..+..+++.|+.++ .+..||+.+......-.. ....-.+++.. +++.++.|+.++. +.++|+.+.
T Consensus 215 spd~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~----h~~~v~~~~~sp~~~~l~s~s~D~~-----v~iwd~~~~ 280 (321)
T 3ow8_A 215 SPDSQLLVTASDDG-----YIKIYDVQHANLAGTLSG----HASWVLNVAFCPDDTHFVSSSSDKS-----VKVWDVGTR 280 (321)
T ss_dssp CTTSCEEEEECTTS-----CEEEEETTTCCEEEEECC----CSSCEEEEEECTTSSEEEEEETTSC-----EEEEETTTT
T ss_pred cCCCCEEEEEcCCC-----eEEEEECCCcceeEEEcC----CCCceEEEEECCCCCEEEEEeCCCc-----EEEEeCCCC
Confidence 44443777777654 488999877654332111 11111122222 5677777776543 889998876
Q ss_pred ceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEc
Q 010115 336 EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSI 386 (518)
Q Consensus 336 ~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~ 386 (518)
+-..... . .......+.+. .++..++.||.++ .|.+||.
T Consensus 281 ~~~~~~~--~----h~~~v~~v~~s--~~g~~l~s~~~d~----~i~vwd~ 319 (321)
T 3ow8_A 281 TCVHTFF--D----HQDQVWGVKYN--GNGSKIVSVGDDQ----EIHIYDC 319 (321)
T ss_dssp EEEEEEC--C----CSSCEEEEEEC--TTSSEEEEEETTC----CEEEEEC
T ss_pred EEEEEEc--C----CCCcEEEEEEC--CCCCEEEEEeCCC----eEEEEeC
Confidence 5433221 0 11122333333 2233556677654 4666663
No 56
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.59 E-value=0.077 Score=58.39 Aligned_cols=224 Identities=7% Similarity=-0.049 Sum_probs=118.9
Q ss_pred cEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecC-
Q 010115 115 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG- 192 (518)
Q Consensus 115 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~- 192 (518)
.+++||+.+.+++..... ..+...-.+++.. ++.|++... .-+++||+.+++|+......
T Consensus 428 Gl~~~~~~~~~~~~~~~~----------~~~~~~v~~i~~d~~g~lwigt~--------~Gl~~~~~~~~~~~~~~~~~~ 489 (781)
T 3v9f_A 428 NISYYNTRLKKFQIIELE----------KNELLDVRVFYEDKNKKIWIGTH--------AGVFVIDLASKKVIHHYDTSN 489 (781)
T ss_dssp EEEEECSSSCEEEECCST----------TTCCCCEEEEEECTTSEEEEEET--------TEEEEEESSSSSCCEEECTTT
T ss_pred CEEEEcCCCCcEEEeccC----------CCCCCeEEEEEECCCCCEEEEEC--------CceEEEeCCCCeEEecccCcc
Confidence 355566666665554321 1111122344444 467777432 24899999999988765311
Q ss_pred -CCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCC
Q 010115 193 -DIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSK 270 (518)
Q Consensus 193 -~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~ 270 (518)
.++... -.+++. .++.||+.. .. ..+++||+.+.+++.......+|.... .+.+.-.+..|++...
T Consensus 490 ~~~~~~~-i~~i~~d~~g~lWigt-~~------~Gl~~~~~~~~~~~~~~~~~~l~~~~i-~~i~~d~~g~lWi~T~--- 557 (781)
T 3v9f_A 490 SQLLENF-VRSIAQDSEGRFWIGT-FG------GGVGIYTPDMQLVRKFNQYEGFCSNTI-NQIYRSSKGQMWLATG--- 557 (781)
T ss_dssp SSCSCSC-EEEEEECTTCCEEEEE-SS------SCEEEECTTCCEEEEECTTTTCSCSCE-EEEEECTTSCEEEEET---
T ss_pred cccccce-eEEEEEcCCCCEEEEE-cC------CCEEEEeCCCCeEEEccCCCCCCCCee-EEEEECCCCCEEEEEC---
Confidence 111111 122222 246777742 11 348899999999988753222332221 1222222333666432
Q ss_pred CCCCCcE-EEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCC
Q 010115 271 SKTLNDL-YSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSV 348 (518)
Q Consensus 271 ~~~~~~v-~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~ 348 (518)
+-+ ++||+++++++.......+|.... .+++.. ++.|++.+. .-+.+||+.+.+++....... .+
T Consensus 558 ----~Glv~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lW~~t~-------~Gl~~~~~~~~~~~~~~~~dG-l~ 624 (781)
T 3v9f_A 558 ----EGLVCFPSARNFDYQVFQRKEGLPNTHI-RAISEDKNGNIWASTN-------TGISCYITSKKCFYTYDHSNN-IP 624 (781)
T ss_dssp ----TEEEEESCTTTCCCEEECGGGTCSCCCC-CEEEECSSSCEEEECS-------SCEEEEETTTTEEEEECGGGT-CC
T ss_pred ----CCceEEECCCCCcEEEccccCCCCCceE-EEEEECCCCCEEEEcC-------CceEEEECCCCceEEecccCC-cc
Confidence 246 999999988887754322233222 344333 578888752 238999999999888653221 11
Q ss_pred CCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccC
Q 010115 349 TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (518)
Q Consensus 349 ~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~ 389 (518)
.......++... .++.| .|||.+ .+..|+|+..
T Consensus 625 ~~~f~~~~~~~~--~~G~l-~~g~~~-----Gl~~f~p~~~ 657 (781)
T 3v9f_A 625 QGSFISGCVTKD--HNGLI-YFGSIN-----GLCFFNPDIA 657 (781)
T ss_dssp SSCEEEEEEEEC--TTSCE-EEEETT-----EEEEECSCCG
T ss_pred ccccccCceEEC--CCCEE-EEECCC-----ceEEEChhhc
Confidence 111112233332 22344 577765 5788887654
No 57
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=96.55 E-value=0.39 Score=47.34 Aligned_cols=229 Identities=10% Similarity=-0.014 Sum_probs=112.6
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCceeEE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~ 176 (518)
++.+++.|+.+ ..+.+||.....-..+.. ....-.+++.. ++..++.|+... .+.
T Consensus 119 ~~~~l~~~~~d-----g~i~i~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~~~~d~------~i~ 174 (425)
T 1r5m_A 119 DGNSIVTGVEN-----GELRLWNKTGALLNVLNF-------------HRAPIVSVKWNKDGTHIISMDVEN------VTI 174 (425)
T ss_dssp TSSEEEEEETT-----SCEEEEETTSCEEEEECC-------------CCSCEEEEEECTTSSEEEEEETTC------CEE
T ss_pred CCCEEEEEeCC-----CeEEEEeCCCCeeeeccC-------------CCccEEEEEECCCCCEEEEEecCC------eEE
Confidence 45677777654 358888854443333322 01111222222 455556666532 588
Q ss_pred EEECCCCcEEEeeecCCCCCCC--------------cceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecC
Q 010115 177 TFDTETECWSVVEAKGDIPVAR--------------SGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT 242 (518)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~~r--------------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 242 (518)
.||..+.+...... .+... .-.++....+..++.|+.+ ..+.+||+.+.+-...-
T Consensus 175 iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~i~~~d~~~~~~~~~~-- 243 (425)
T 1r5m_A 175 LWNVISGTVMQHFE---LKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK------GAIFVYQITEKTPTGKL-- 243 (425)
T ss_dssp EEETTTTEEEEEEC---CC---------------CCCBSCCEEEETTEEEEECGG------GCEEEEETTCSSCSEEE--
T ss_pred EEECCCCcEEEEee---ccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCC------CeEEEEEcCCCceeeee--
Confidence 89988876544322 11111 0222333334446666654 34889998875432221
Q ss_pred CCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCC
Q 010115 243 GTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRK 321 (518)
Q Consensus 243 g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~ 321 (518)
... ...-.+++...+..+++.|+.++ .+..||+.+.+-...-. .......+++.. ++ +++.|+.++
T Consensus 244 -~~~-~~~i~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~----~~~~~i~~~~~~~~~-~l~~~~~d~- 310 (425)
T 1r5m_A 244 -IGH-HGPISVLEFNDTNKLLLSASDDG-----TLRIWHGGNGNSQNCFY----GHSQSIVSASWVGDD-KVISCSMDG- 310 (425)
T ss_dssp -CCC-SSCEEEEEEETTTTEEEEEETTS-----CEEEECSSSBSCSEEEC----CCSSCEEEEEEETTT-EEEEEETTS-
T ss_pred -ccC-CCceEEEEECCCCCEEEEEcCCC-----EEEEEECCCCccceEec----CCCccEEEEEECCCC-EEEEEeCCC-
Confidence 111 11122333443332666666543 48889887654322211 111122233333 45 666666543
Q ss_pred CCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 322 KRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 322 ~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
.+.+||+.+.+-....... ......+.+.. .+.+++.|+.++ .+.+||+.+.+
T Consensus 311 ----~i~i~d~~~~~~~~~~~~~------~~~i~~~~~s~--~~~~l~~~~~dg----~i~i~~~~~~~ 363 (425)
T 1r5m_A 311 ----SVRLWSLKQNTLLALSIVD------GVPIFAGRISQ--DGQKYAVAFMDG----QVNVYDLKKLN 363 (425)
T ss_dssp ----EEEEEETTTTEEEEEEECT------TCCEEEEEECT--TSSEEEEEETTS----CEEEEECHHHH
T ss_pred ----cEEEEECCCCcEeEecccC------CccEEEEEEcC--CCCEEEEEECCC----eEEEEECCCCc
Confidence 5899999876644332211 11223333332 234666776543 68899987654
No 58
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=96.49 E-value=0.36 Score=44.59 Aligned_cols=229 Identities=12% Similarity=-0.024 Sum_probs=114.3
Q ss_pred CCEEEE-EcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCceeE
Q 010115 98 GNKMIV-VGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSV 175 (518)
Q Consensus 98 ~~~lyv-~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v 175 (518)
++.+|+ .... .+.+.+||+.+......... . ...-++++.. ++.+|+... . ..+
T Consensus 34 ~g~l~v~~~~~-----~~~i~~~~~~~~~~~~~~~~----------~--~~~p~~i~~~~~g~l~v~~~-~------~~i 89 (270)
T 1rwi_B 34 AGNVYVTSEGM-----YGRVVKLATGSTGTTVLPFN----------G--LYQPQGLAVDGAGTVYVTDF-N------NRV 89 (270)
T ss_dssp TCCEEEEECSS-----SCEEEEECC-----EECCCC----------S--CCSCCCEEECTTCCEEEEET-T------TEE
T ss_pred CCCEEEEccCC-----CCcEEEecCCCcccceEeeC----------C--cCCcceeEECCCCCEEEEcC-C------CEE
Confidence 456888 4332 24678888876654443221 0 0112344444 467888754 2 268
Q ss_pred EEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEE
Q 010115 176 WTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (518)
Q Consensus 176 ~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~ 254 (518)
++||+.+........ .....-+.++.. ++++|+.... ...+++||..+......... ... .-..+
T Consensus 90 ~~~d~~~~~~~~~~~----~~~~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~~~~~~~~~~~-~~~---~p~~i 155 (270)
T 1rwi_B 90 VTLAAGSNNQTVLPF----DGLNYPEGLAVDTQGAVYVADRG------NNRVVKLAAGSKTQTVLPFT-GLN---DPDGV 155 (270)
T ss_dssp EEECTTCSCCEECCC----CSCSSEEEEEECTTCCEEEEEGG------GTEEEEECTTCCSCEECCCC-SCC---SCCCE
T ss_pred EEEeCCCceEeeeec----CCcCCCcceEECCCCCEEEEECC------CCEEEEEECCCceeEeeccc-cCC---CceeE
Confidence 999998876544331 111222344443 5678887432 24588887766554433211 111 11234
Q ss_pred EEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCCCcCeEEEEECC
Q 010115 255 ALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDIL 333 (518)
Q Consensus 255 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~ 333 (518)
++..+..+|+.... .+.+.+||+.+..-...... .. ..-.+.+.. ++.+|+..... ..+.+||+.
T Consensus 156 ~~~~~g~l~v~~~~-----~~~i~~~~~~~~~~~~~~~~---~~-~~p~~i~~d~~g~l~v~~~~~-----~~v~~~~~~ 221 (270)
T 1rwi_B 156 AVDNSGNVYVTDTD-----NNRVVKLEAESNNQVVLPFT---DI-TAPWGIAVDEAGTVYVTEHNT-----NQVVKLLAG 221 (270)
T ss_dssp EECTTCCEEEEEGG-----GTEEEEECTTTCCEEECCCS---SC-CSEEEEEECTTCCEEEEETTT-----SCEEEECTT
T ss_pred EEeCCCCEEEEECC-----CCEEEEEecCCCceEeeccc---CC-CCceEEEECCCCCEEEEECCC-----CcEEEEcCC
Confidence 44433338876532 24699999887654333211 11 111233333 45888876432 348999987
Q ss_pred CCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 334 KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 334 ~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
+..-..... . .......+.+.. ++.||+....+ +.|.+|++...+
T Consensus 222 ~~~~~~~~~---~---~~~~p~~i~~~~--~g~l~v~~~~~----~~v~~~~~~~~~ 266 (270)
T 1rwi_B 222 STTSTVLPF---T---GLNTPLAVAVDS--DRTVYVADRGN----DRVVKLTSLEHH 266 (270)
T ss_dssp CSCCEECCC---C---SCSCEEEEEECT--TCCEEEEEGGG----TEEEEECCCGGG
T ss_pred CCcceeecc---C---CCCCceeEEECC--CCCEEEEECCC----CEEEEEcCCCcc
Confidence 765433221 1 111223344432 23477665432 368888876554
No 59
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.48 E-value=0.69 Score=44.83 Aligned_cols=242 Identities=12% Similarity=0.117 Sum_probs=124.5
Q ss_pred CCCCeEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccce
Q 010115 72 NSENWMVLSIAGDKPIPRFNHAAAVI-GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGH 150 (518)
Q Consensus 72 ~~~~W~~l~~~~~~p~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~ 150 (518)
...+|+.+. .|....-.++... .+.+|++|- . ..+++-.-...+|+.+... .+.+.....
T Consensus 23 ~g~~W~~~~----~~~~~~~~~v~~~~~~~~~~~G~-~-----g~i~~s~DgG~tW~~~~~~---------~~~~~~~~~ 83 (327)
T 2xbg_A 23 DYNPWEAIQ----LPTTATILDMSFIDRHHGWLVGV-N-----ATLMETRDGGQTWEPRTLV---------LDHSDYRFN 83 (327)
T ss_dssp SSCCEEEEE----CSCSSCEEEEEESSSSCEEEEET-T-----TEEEEESSTTSSCEECCCC---------CSCCCCEEE
T ss_pred CCCCceEee----cCCCCcEEEEEECCCCcEEEEcC-C-----CeEEEeCCCCCCCeECCCC---------CCCCCccEE
Confidence 567899986 2322222333333 466888663 1 1244332234689998642 111222334
Q ss_pred EEEEECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEE-EECCEEEEEcccCCCCcccCcEEEE
Q 010115 151 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVV-RASSVLILFGGEDGKRRKLNDLHMF 229 (518)
Q Consensus 151 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~y 229 (518)
++....+.+|+.|-. ..+++-+-.-.+|+.+.....+|.. ...++ .-++.+|+.|.. ..+++-
T Consensus 84 ~i~~~~~~~~~~g~~-------g~i~~S~DgG~tW~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~-------g~v~~S 147 (327)
T 2xbg_A 84 SVSFQGNEGWIVGEP-------PIMLHTTDGGQSWSQIPLDPKLPGS--PRLIKALGNGSAEMITNV-------GAIYRT 147 (327)
T ss_dssp EEEEETTEEEEEEET-------TEEEEESSTTSSCEECCCCTTCSSC--EEEEEEEETTEEEEEETT-------CCEEEE
T ss_pred EEEecCCeEEEEECC-------CeEEEECCCCCCceECccccCCCCC--eEEEEEECCCCEEEEeCC-------ccEEEE
Confidence 455557888887532 1355543345789998642112221 23333 346788887641 124443
Q ss_pred EcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcC-CCeEEEeecCCCCCCCCcceEEEEE
Q 010115 230 DLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFE-TMIWTRIKIRGFHPSPRAGCCGVLC 308 (518)
Q Consensus 230 d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~-~~~W~~v~~~~~~p~~r~~~~~~~~ 308 (518)
+-.-.+|+.+.. +.+...+.++...+..+++.|-. ..+++-+-. ..+|+.+.. +.+...+.++..
T Consensus 148 ~DgG~tW~~~~~----~~~~~~~~~~~~~~~~~~~~g~~------G~~~~S~d~gG~tW~~~~~----~~~~~~~~~~~~ 213 (327)
T 2xbg_A 148 KDSGKNWQALVQ----EAIGVMRNLNRSPSGEYVAVSSR------GSFYSTWEPGQTAWEPHNR----TTSRRLHNMGFT 213 (327)
T ss_dssp SSTTSSEEEEEC----SCCCCEEEEEECTTSCEEEEETT------SSEEEEECTTCSSCEEEEC----CSSSCEEEEEEC
T ss_pred cCCCCCCEEeec----CCCcceEEEEEcCCCcEEEEECC------CcEEEEeCCCCCceeECCC----CCCCccceeEEC
Confidence 333568999862 22233445555545446666532 246665533 678999854 233334444433
Q ss_pred -CCEEEEEcccCCCCCcCeEEEEECC-CCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCC
Q 010115 309 -GTKWYIAGGGSRKKRHAETLIFDIL-KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGI 373 (518)
Q Consensus 309 -~~~iyv~GG~~~~~~~~~v~~yd~~-~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~ 373 (518)
++.+|+++.. ..+++.+.+ ..+|+.+...+. + ...+...+... ..+.+|+.|+.
T Consensus 214 ~~g~~~~~~~~------G~~~~s~~D~G~tW~~~~~~~~--~-~~~~~~~v~~~--~~~~~~~~g~~ 269 (327)
T 2xbg_A 214 PDGRLWMIVNG------GKIAFSDPDNSENWGELLSPLR--R-NSVGFLDLAYR--TPNEVWLAGGA 269 (327)
T ss_dssp TTSCEEEEETT------TEEEEEETTEEEEECCCBCTTS--S-CCSCEEEEEES--SSSCEEEEEST
T ss_pred CCCCEEEEeCC------ceEEEecCCCCCeeEeccCCcc--c-CCcceEEEEec--CCCEEEEEeCC
Confidence 6688877642 125555433 678988653101 1 11223333332 23568888764
No 60
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=96.43 E-value=0.71 Score=44.30 Aligned_cols=201 Identities=8% Similarity=-0.009 Sum_probs=103.1
Q ss_pred CEEEEEcCcCCCCCCCcEEEEEcCCCcEEEccccc-ccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCceeE
Q 010115 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKL-YLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSV 175 (518)
Q Consensus 99 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v 175 (518)
+.+|+.+..+ +.++++|+.+.+-...-... ...+. ...+..-+.++.. ++.+|+.+... ...+
T Consensus 101 ~~l~v~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~~i 166 (353)
T 3vgz_A 101 QTLWFGNTVN-----SAVTAIDAKTGEVKGRLVLDDRKRTE----EVRPLQPRELVADDATNTVYISGIGK-----ESVI 166 (353)
T ss_dssp TEEEEEETTT-----TEEEEEETTTCCEEEEEESCCCCCCS----SCCCCEEEEEEEETTTTEEEEEEESS-----SCEE
T ss_pred CEEEEEecCC-----CEEEEEeCCCCeeEEEEecCCCcccc----ccCCCCCceEEECCCCCEEEEEecCC-----CceE
Confidence 4588876633 47899999887543222210 00000 0001112333333 46788776321 1369
Q ss_pred EEEECCCCcEEEeeecCCCCCCCcceEEEE--ECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcE
Q 010115 176 WTFDTETECWSVVEAKGDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV 253 (518)
Q Consensus 176 ~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~ 253 (518)
+.+|+.+.+-..... . ....-+.++. .++.+|+... -+.+.++|+.+.+-......+..........
T Consensus 167 ~~~d~~~~~~~~~~~---~-~~~~~~~~~~s~dg~~l~~~~~-------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 235 (353)
T 3vgz_A 167 WVVDGGNIKLKTAIQ---N-TGKMSTGLALDSEGKRLYTTNA-------DGELITIDTADNKILSRKKLLDDGKEHFFIN 235 (353)
T ss_dssp EEEETTTTEEEEEEC---C-CCTTCCCCEEETTTTEEEEECT-------TSEEEEEETTTTEEEEEEECCCSSSCCCEEE
T ss_pred EEEcCCCCceEEEec---C-CCCccceEEECCCCCEEEEEcC-------CCeEEEEECCCCeEEEEEEcCCCCCCcccce
Confidence 999998876443322 0 1111222333 3456777533 2468899998876543321111111111222
Q ss_pred EEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEcccCCCCCcCeEEEE
Q 010115 254 AALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIF 330 (518)
Q Consensus 254 ~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~y 330 (518)
++.. +++.+|+.... .+.++.||+.+.+....... +.+ ...+.. ++.+|+.+... +.+.++
T Consensus 236 ~~~s~dg~~l~~~~~~-----~~~v~~~d~~~~~~~~~~~~---~~~---~~~~~s~dg~~l~v~~~~~-----~~v~~~ 299 (353)
T 3vgz_A 236 ISLDTARQRAFITDSK-----AAEVLVVDTRNGNILAKVAA---PES---LAVLFNPARNEAYVTHRQA-----GKVSVI 299 (353)
T ss_dssp EEEETTTTEEEEEESS-----SSEEEEEETTTCCEEEEEEC---SSC---CCEEEETTTTEEEEEETTT-----TEEEEE
T ss_pred EEECCCCCEEEEEeCC-----CCEEEEEECCCCcEEEEEEc---CCC---ceEEECCCCCEEEEEECCC-----CeEEEE
Confidence 3343 35556665432 25799999988776544433 222 123332 44578776433 459999
Q ss_pred ECCCCceEEe
Q 010115 331 DILKGEWSVA 340 (518)
Q Consensus 331 d~~~~~W~~~ 340 (518)
|+.+.+....
T Consensus 300 d~~~~~~~~~ 309 (353)
T 3vgz_A 300 DAKSYKVVKT 309 (353)
T ss_dssp ETTTTEEEEE
T ss_pred ECCCCeEEEE
Confidence 9988776543
No 61
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=96.40 E-value=0.44 Score=45.49 Aligned_cols=236 Identities=9% Similarity=-0.023 Sum_probs=116.5
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCceeE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSV 175 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v 175 (518)
.+.+|+....+ +.+.+||+.+.+....... + . ....++.. ++.+|+.+... ..+
T Consensus 9 ~~~~~v~~~~~-----~~v~~~d~~~~~~~~~~~~----------~--~-~~~~~~~s~dg~~l~~~~~~~------~~i 64 (331)
T 3u4y_A 9 SNFGIVVEQHL-----RRISFFSTDTLEILNQITL----------G--Y-DFVDTAITSDCSNVVVTSDFC------QTL 64 (331)
T ss_dssp CCEEEEEEGGG-----TEEEEEETTTCCEEEEEEC----------C--C-CEEEEEECSSSCEEEEEESTT------CEE
T ss_pred CCEEEEEecCC-----CeEEEEeCcccceeeeEEc----------c--C-CcceEEEcCCCCEEEEEeCCC------CeE
Confidence 46678877543 5789999998877655431 1 1 11222222 34577776532 279
Q ss_pred EEEECCCCcE-EEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCc
Q 010115 176 WTFDTETECW-SVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 252 (518)
Q Consensus 176 ~~yd~~t~~W-~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~ 252 (518)
+++|+.+.+. ......+ ..++ ++++.. +..+| .+..... ...+++||+.+.+....-..+. ..+
T Consensus 65 ~~~d~~~~~~~~~~~~~~--~~~~--~~~~~s~dg~~l~-~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~-----~~~ 131 (331)
T 3u4y_A 65 VQIETQLEPPKVVAIQEG--QSSM--ADVDITPDDQFAV-TVTGLNH---PFNMQSYSFLKNKFISTIPIPY-----DAV 131 (331)
T ss_dssp EEEECSSSSCEEEEEEEC--SSCC--CCEEECTTSSEEE-ECCCSSS---SCEEEEEETTTTEEEEEEECCT-----TEE
T ss_pred EEEECCCCceeEEecccC--CCCc--cceEECCCCCEEE-EecCCCC---cccEEEEECCCCCeEEEEECCC-----Ccc
Confidence 9999998875 3222211 1122 213332 34566 3322211 1379999998887655432111 124
Q ss_pred EEEEECC-cEEEEEcCCCCCCCCCc-EEEEEcCCCe-EEEeecCCCCCCCCcceEEEEE-CC-EEEEEcccCCCCCcCeE
Q 010115 253 VAALYDD-KNLLIFGGSSKSKTLND-LYSLDFETMI-WTRIKIRGFHPSPRAGCCGVLC-GT-KWYIAGGGSRKKRHAET 327 (518)
Q Consensus 253 ~~~~~~~-~~lyv~GG~~~~~~~~~-v~~yd~~~~~-W~~v~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~v 327 (518)
.++...+ +.+|+.+... +. +..|++.... ....... ..+....-..++.. ++ .+|+.+... +.+
T Consensus 132 ~~~~spdg~~l~~~~~~~-----~~~i~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~spdg~~l~v~~~~~-----~~v 200 (331)
T 3u4y_A 132 GIAISPNGNGLILIDRSS-----ANTVRRFKIDADGVLFDTGQE-FISGGTRPFNITFTPDGNFAFVANLIG-----NSI 200 (331)
T ss_dssp EEEECTTSSCEEEEEETT-----TTEEEEEEECTTCCEEEEEEE-EECSSSSEEEEEECTTSSEEEEEETTT-----TEE
T ss_pred ceEECCCCCEEEEEecCC-----CceEEEEEECCCCcEeecCCc-cccCCCCccceEECCCCCEEEEEeCCC-----CeE
Confidence 4555444 3467665422 34 7777764321 1111000 00111111233332 44 577765432 458
Q ss_pred EEEECCCCce-EEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCCc
Q 010115 328 LIFDILKGEW-SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 391 (518)
Q Consensus 328 ~~yd~~~~~W-~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~w 391 (518)
.+||+.+.+. +.+...+.. .....+.+. ++...||+..... +.+.++|+.+.+.
T Consensus 201 ~v~d~~~~~~~~~~~~~~~~-----~~~~~~~~s-pdg~~l~v~~~~~----~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 201 GILETQNPENITLLNAVGTN-----NLPGTIVVS-RDGSTVYVLTEST----VDVFNFNQLSGTL 255 (331)
T ss_dssp EEEECSSTTSCEEEEEEECS-----SCCCCEEEC-TTSSEEEEECSSE----EEEEEEETTTTEE
T ss_pred EEEECCCCcccceeeeccCC-----CCCceEEEC-CCCCEEEEEEcCC----CEEEEEECCCCce
Confidence 9999988775 111111111 111223333 3345576655422 3588899877654
No 62
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.11 Score=56.85 Aligned_cols=235 Identities=10% Similarity=0.078 Sum_probs=116.9
Q ss_pred CEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEE-EC--CEEEEEcCcCCCCCCceeE
Q 010115 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WG--KKVLLVGGKTDSGSDRVSV 175 (518)
Q Consensus 99 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~--~~iyv~GG~~~~~~~~~~v 175 (518)
+..++.||.+ ..+.+||..+.++..+... ......-.+++. .+ +..++.|+.++ .+
T Consensus 21 g~~latg~~d-----g~I~vwd~~~~~~~~~~~l----------~~h~~~V~~l~~s~~~~~~~l~s~s~Dg------~I 79 (753)
T 3jro_A 21 GKRLATCSSD-----KTIKIFEVEGETHKLIDTL----------TGHEGPVWRVDWAHPKFGTILASCSYDG------KV 79 (753)
T ss_dssp SCCEEEEETT-----TEEEEEEEETTEEEEEEEE----------CCCSSCEEEEEECCTTSCSEEEEEETTS------CE
T ss_pred CCeEEEEECC-----CcEEEEecCCCCCccceec----------cCCcCceEEEEecCCCCCCEEEEEeCCC------eE
Confidence 4566666644 3588888887777766542 111111122222 22 56777777643 58
Q ss_pred EEEECCCCcEEEeeecCCCCCCCcc-eEEEEE-C--CEEEEEcccCCCCcccCcEEEEEcCCCcEEEe-ecCCCCCCCCC
Q 010115 176 WTFDTETECWSVVEAKGDIPVARSG-HTVVRA-S--SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPL-HCTGTGPSPRS 250 (518)
Q Consensus 176 ~~yd~~t~~W~~~~~~~~~p~~r~~-~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~-~~~g~~p~~r~ 250 (518)
..||..+++|..+.. ....... .++... + +.+++.|+.++ .+.+||+.+..-... ... ..+ ..
T Consensus 80 ~vwd~~~~~~~~~~~---~~~h~~~V~~v~~sp~~~~~~l~sgs~dg------~I~vwdl~~~~~~~~~~~~-~~~--~~ 147 (753)
T 3jro_A 80 LIWKEENGRWSQIAV---HAVHSASVNSVQWAPHEYGPLLLVASSDG------KVSVVEFKENGTTSPIIID-AHA--IG 147 (753)
T ss_dssp EEEEEETTEEEEEEE---ECCCSSCEEEEEECCGGGCSEEEEEETTS------EEEEEECCSSSCCCCEEEE-CCS--SC
T ss_pred EEEECCCCccccccc---ccCCCCCeEEEEECCCCCCCEEEEEeCCC------cEEEEEeecCCCcceeEee-cCC--Cc
Confidence 888988888876654 2211222 222222 2 56777777654 477888766521111 000 111 11
Q ss_pred CcEEEEE--------------CCcEEEEEcCCCCCCCCCcEEEEEcCC--CeEEEeecCCCCCCCCcceEEEEE-C---C
Q 010115 251 NHVAALY--------------DDKNLLIFGGSSKSKTLNDLYSLDFET--MIWTRIKIRGFHPSPRAGCCGVLC-G---T 310 (518)
Q Consensus 251 ~~~~~~~--------------~~~~lyv~GG~~~~~~~~~v~~yd~~~--~~W~~v~~~~~~p~~r~~~~~~~~-~---~ 310 (518)
-.+++.. ++. +++.|+.++ .+..||..+ ..+..+..... ....-.+++.. + +
T Consensus 148 v~~l~~~p~~~~~~~~~~~~~d~~-~l~sgs~dg-----~I~iwd~~~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~~ 219 (753)
T 3jro_A 148 VNSASWAPATIEEDGEHNGTKESR-KFVTGGADN-----LVKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLR 219 (753)
T ss_dssp EEEEEECCCC---------CGGGC-CEEEEETTS-----CEEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSS
T ss_pred eEEEEecCcccccccccccCCCCC-EEEEEECCC-----eEEEEeccCCcccceeeeeecC--CCCcEEEEEeccCCCCC
Confidence 1122222 234 667776554 377777754 34444443211 11112222222 4 6
Q ss_pred EEEEEcccCCCCCcCeEEEEECCCCc--eEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEccc
Q 010115 311 KWYIAGGGSRKKRHAETLIFDILKGE--WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (518)
Q Consensus 311 ~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~ 388 (518)
++++.||.++. +.+||+.+.. +....... .........+.+.. ++.+++.||.++ .|.+|++.+
T Consensus 220 ~~l~s~s~Dg~-----I~iwd~~~~~~~~~~~~~~~---~~~~~~v~~l~~sp--dg~~l~s~s~Dg----~I~vwd~~~ 285 (753)
T 3jro_A 220 SYLASVSQDRT-----CIIWTQDNEQGPWKKTLLKE---EKFPDVLWRASWSL--SGNVLALSGGDN----KVTLWKENL 285 (753)
T ss_dssp EEEEEEESSSC-----EEEEEESSSSSCCBCCBSSS---SCCSSCCCCEEECT--TTCCEEEECSSS----CEECCBCCS
T ss_pred CEEEEEecCCE-----EEEecCCCCCCcceeEEecc---CCCCCceEEEEEcC--CCCEEEEEcCCC----EEEEEecCC
Confidence 88888887654 8888877642 21111000 01111122333332 234566776643 578888774
No 63
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.36 E-value=0.27 Score=49.52 Aligned_cols=189 Identities=12% Similarity=0.216 Sum_probs=103.0
Q ss_pred EEEECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEc
Q 010115 152 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDL 231 (518)
Q Consensus 152 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~ 231 (518)
++..++..++.|+.++ .+..||..+.+-...-. .....-.+...++.+++.|+.++ .+.+||+
T Consensus 138 ~~~~d~~~l~~g~~dg------~i~iwd~~~~~~~~~~~-----~h~~~v~~l~~~~~~l~sg~~dg------~i~vwd~ 200 (435)
T 1p22_A 138 CLQYDDQKIVSGLRDN------TIKIWDKNTLECKRILT-----GHTGSVLCLQYDERVIITGSSDS------TVRVWDV 200 (435)
T ss_dssp EEECCSSEEEEEESSS------CEEEEESSSCCEEEEEC-----CCSSCEEEEECCSSEEEEEETTS------CEEEEES
T ss_pred EEEECCCEEEEEeCCC------eEEEEeCCCCeEEEEEc-----CCCCcEEEEEECCCEEEEEcCCC------eEEEEEC
Confidence 3344677777777653 58889988876443321 11112223334777888887654 3888999
Q ss_pred CCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEe-ecCCCCCCCCcceEEEEECC
Q 010115 232 KSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRI-KIRGFHPSPRAGCCGVLCGT 310 (518)
Q Consensus 232 ~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v-~~~~~~p~~r~~~~~~~~~~ 310 (518)
.+.+-...- . .......+..+.+. +++.|+.++ .+..||+.+..-... ... ........++..++
T Consensus 201 ~~~~~~~~~---~--~h~~~v~~l~~~~~-~l~s~s~dg-----~i~vwd~~~~~~~~~~~~~---~~~~~~v~~~~~~~ 266 (435)
T 1p22_A 201 NTGEMLNTL---I--HHCEAVLHLRFNNG-MMVTCSKDR-----SIAVWDMASPTDITLRRVL---VGHRAAVNVVDFDD 266 (435)
T ss_dssp SSCCEEEEE---C--CCCSCEEEEECCTT-EEEEEETTS-----CEEEEECSSSSCCEEEEEE---CCCSSCEEEEEEET
T ss_pred CCCcEEEEE---c--CCCCcEEEEEEcCC-EEEEeeCCC-----cEEEEeCCCCCCceeeeEe---cCCCCcEEEEEeCC
Confidence 887654332 1 11122234445666 677776654 488999876542211 111 11111223333466
Q ss_pred EEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 311 KWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 311 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
+.++.|+.++ .+.+||+.+.+-....... ......+... +.+++.|+.++ .+.+||+.+.+
T Consensus 267 ~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~------~~~v~~~~~~----~~~l~~g~~dg----~i~iwd~~~~~ 327 (435)
T 1p22_A 267 KYIVSASGDR-----TIKVWNTSTCEFVRTLNGH------KRGIACLQYR----DRLVVSGSSDN----TIRLWDIECGA 327 (435)
T ss_dssp TEEEEEETTS-----EEEEEETTTCCEEEEEECC------SSCEEEEEEE----TTEEEEEETTS----CEEEEETTTCC
T ss_pred CEEEEEeCCC-----eEEEEECCcCcEEEEEcCC------CCcEEEEEeC----CCEEEEEeCCC----eEEEEECCCCC
Confidence 6677776543 4889999886544322111 1112233332 23567777654 58889887654
No 64
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=96.35 E-value=0.12 Score=48.07 Aligned_cols=228 Identities=11% Similarity=0.055 Sum_probs=115.4
Q ss_pred CCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEE-ECCEEEEEcCcCCCCCCceeEEEEECCC-CcEEEeee
Q 010115 113 LDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSGSDRVSVWTFDTET-ECWSVVEA 190 (518)
Q Consensus 113 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t-~~W~~~~~ 190 (518)
...++++|+.+.....+... .. .-.+++. -+++.+++++. ..++++|+.+ .+...+..
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~------------~~-~v~~~~~spdg~~l~~~~~-------~~i~~~d~~~~~~~~~~~~ 80 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQT------------PE-LFEAPNWSPDGKYLLLNSE-------GLLYRLSLAGDPSPEKVDT 80 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEE------------SS-CCEEEEECTTSSEEEEEET-------TEEEEEESSSCCSCEECCC
T ss_pred ceeEEEEeCCCCceeeeccC------------Cc-ceEeeEECCCCCEEEEEcC-------CeEEEEeCCCCCCceEecc
Confidence 45789999998877655431 01 1122222 24555555542 2699999998 77665542
Q ss_pred cCCCCC-CCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEE-CCcEEEEEcCC
Q 010115 191 KGDIPV-ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGS 268 (518)
Q Consensus 191 ~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~ 268 (518)
... .........-+++.+++++.... ....+|.+|..+.....+.. .. . ....+.. +++.|++.++.
T Consensus 81 ---~~~~~~~~~~~~spdg~~l~~~~~~~~--~~~~l~~~~~~~~~~~~~~~---~~-~--~~~~~~spdg~~l~~~~~~ 149 (297)
T 2ojh_A 81 ---GFATICNNDHGISPDGALYAISDKVEF--GKSAIYLLPSTGGTPRLMTK---NL-P--SYWHGWSPDGKSFTYCGIR 149 (297)
T ss_dssp ---TTCCCBCSCCEECTTSSEEEEEECTTT--SSCEEEEEETTCCCCEECCS---SS-S--EEEEEECTTSSEEEEEEEE
T ss_pred ---ccccccccceEECCCCCEEEEEEeCCC--CcceEEEEECCCCceEEeec---CC-C--ccceEECCCCCEEEEEECC
Confidence 121 12122222234555666554332 24679999988777655531 11 1 2223333 34544444443
Q ss_pred CCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCE-EEEEcccCCCCCcCeEEEEECCCCceEEeecCCCC
Q 010115 269 SKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK-WYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSS 346 (518)
Q Consensus 269 ~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~ 346 (518)
++. ..+|.++..+.....+... + ... ...... +++ |++.+.... ...+|.+++.+.....+....
T Consensus 150 ~~~---~~l~~~~~~~~~~~~~~~~---~-~~~-~~~~~s~dg~~l~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~-- 216 (297)
T 2ojh_A 150 DQV---FDIYSMDIDSGVETRLTHG---E-GRN-DGPDYSPDGRWIYFNSSRTG---QMQIWRVRVDGSSVERITDSA-- 216 (297)
T ss_dssp TTE---EEEEEEETTTCCEEECCCS---S-SCE-EEEEECTTSSEEEEEECTTS---SCEEEEEETTSSCEEECCCCS--
T ss_pred CCc---eEEEEEECCCCcceEcccC---C-Ccc-ccceECCCCCEEEEEecCCC---CccEEEECCCCCCcEEEecCC--
Confidence 321 3688888887776665432 1 111 222222 454 444433232 356888888777776654211
Q ss_pred CCCCCCCceEEEEeeCCccEEEEEcCCCCC-------CCCcEEEEEcccCCc
Q 010115 347 SVTSNKGFTLVLVQHKEKDFLVAFGGIKKE-------PSNQVEVLSIEKNES 391 (518)
Q Consensus 347 ~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~-------~~~~v~~yd~~~~~w 391 (518)
.....+.+. .+...|+ +++..+. ....++++|+.+.+.
T Consensus 217 -----~~~~~~~~s-~dg~~l~-~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 217 -----YGDWFPHPS-PSGDKVV-FVSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp -----EEEEEEEEC-TTSSEEE-EEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred -----cccCCeEEC-CCCCEEE-EEEcCCCCCcccccCceEEEEEecCCCCc
Confidence 112223333 2333444 4433221 124688888877653
No 65
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=96.34 E-value=0.82 Score=44.18 Aligned_cols=147 Identities=13% Similarity=0.128 Sum_probs=76.7
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCC
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~ 234 (518)
++. ++.|+.+. .+..||+.+.+-...-. ... ..-.+++. -++.+++.|+.+. .+.+||+.+.
T Consensus 154 ~~~-l~s~s~d~------~i~~wd~~~~~~~~~~~---~h~-~~v~~~~~~~~~~~l~sg~~d~------~v~~wd~~~~ 216 (340)
T 1got_B 154 DNQ-IVTSSGDT------TCALWDIETGQQTTTFT---GHT-GDVMSLSLAPDTRLFVSGACDA------SAKLWDVREG 216 (340)
T ss_dssp TTE-EEEEETTS------CEEEEETTTTEEEEEEC---CCS-SCEEEEEECTTSSEEEEEETTS------CEEEEETTTC
T ss_pred CCc-EEEEECCC------cEEEEECCCCcEEEEEc---CCC-CceEEEEECCCCCEEEEEeCCC------cEEEEECCCC
Confidence 555 44554432 58889998876443221 111 11122222 2466777877654 3788998776
Q ss_pred cEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE--CCEE
Q 010115 235 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKW 312 (518)
Q Consensus 235 ~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~--~~~i 312 (518)
.-...- ... ...-.+++...+..+++.|+.++ .+..||+.+..-...-.. +........+.+ ++++
T Consensus 217 ~~~~~~---~~h-~~~v~~v~~~p~~~~l~s~s~d~-----~v~iwd~~~~~~~~~~~~---~~~~~~v~~~~~s~~g~~ 284 (340)
T 1got_B 217 MCRQTF---TGH-ESDINAICFFPNGNAFATGSDDA-----TCRLFDLRADQELMTYSH---DNIICGITSVSFSKSGRL 284 (340)
T ss_dssp SEEEEE---CCC-SSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEECC---TTCCSCEEEEEECTTSSE
T ss_pred eeEEEE---cCC-cCCEEEEEEcCCCCEEEEEcCCC-----cEEEEECCCCcEEEEEcc---CCcccceEEEEECCCCCE
Confidence 543321 111 11122333443333677777654 488999877653222111 111112233333 6677
Q ss_pred EEEcccCCCCCcCeEEEEECCCCc
Q 010115 313 YIAGGGSRKKRHAETLIFDILKGE 336 (518)
Q Consensus 313 yv~GG~~~~~~~~~v~~yd~~~~~ 336 (518)
++.|+.++ .+.+||..+..
T Consensus 285 l~~g~~d~-----~i~vwd~~~~~ 303 (340)
T 1got_B 285 LLAGYDDF-----NCNVWDALKAD 303 (340)
T ss_dssp EEEEETTS-----EEEEEETTTCC
T ss_pred EEEECCCC-----eEEEEEcccCc
Confidence 78877553 48899987654
No 66
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=96.33 E-value=0.35 Score=46.89 Aligned_cols=195 Identities=12% Similarity=0.128 Sum_probs=100.7
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcc-eEEEEE-C--CEEEEEcccCCCCcccCcEEEEEc
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSG-HTVVRA-S--SVLILFGGEDGKRRKLNDLHMFDL 231 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~-~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~yd~ 231 (518)
++..++.|+.+. .+..||....++..+.. +...... .++... + +.+++.|+.++ .+.+||+
T Consensus 22 ~~~~l~~~~~dg------~i~iw~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~~l~s~~~dg------~v~iwd~ 86 (379)
T 3jrp_A 22 YGKRLATCSSDK------TIKIFEVEGETHKLIDT---LTGHEGPVWRVDWAHPKFGTILASCSYDG------KVLIWKE 86 (379)
T ss_dssp SSSEEEEEETTS------CEEEEEEETTEEEEEEE---ECCCSSCEEEEEECCGGGCSEEEEEETTS------CEEEEEE
T ss_pred CCCEEEEEECCC------cEEEEecCCCcceeeeE---ecCCCCcEEEEEeCCCCCCCEEEEeccCC------EEEEEEc
Confidence 456666776543 47777777667766543 2211111 222332 2 56777777654 4888999
Q ss_pred CCCcEEEeecCCCCCCCCCCcEEEEEC---CcEEEEEcCCCCCCCCCcEEEEEcCCCeE-EEeecCCCCCCCCcceEEEE
Q 010115 232 KSLTWLPLHCTGTGPSPRSNHVAALYD---DKNLLIFGGSSKSKTLNDLYSLDFETMIW-TRIKIRGFHPSPRAGCCGVL 307 (518)
Q Consensus 232 ~t~~W~~~~~~g~~p~~r~~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~W-~~v~~~~~~p~~r~~~~~~~ 307 (518)
.+.+|..+..... ....-.+++... +. +++.|+.++ .+..||+.+..- ...... .....-.+...
T Consensus 87 ~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~-~l~~~~~d~-----~i~v~d~~~~~~~~~~~~~---~~~~~v~~~~~ 155 (379)
T 3jrp_A 87 ENGRWSQIAVHAV--HSASVNSVQWAPHEYGP-LLLVASSDG-----KVSVVEFKENGTTSPIIID---AHAIGVNSASW 155 (379)
T ss_dssp ETTEEEEEEEECC--CSSCEEEEEECCGGGCS-EEEEEETTS-----EEEEEECCTTSCCCEEEEE---CCTTCEEEEEE
T ss_pred CCCceeEeeeecC--CCcceEEEEeCCCCCCC-EEEEecCCC-----cEEEEecCCCCceeeEEec---CCCCceEEEEE
Confidence 9998877652211 111222333333 44 677776543 588888876521 111111 01111112222
Q ss_pred E--------------CCEEEEEcccCCCCCcCeEEEEECCCC--ceEEeecCCCCCCCCCCCceEEEEeeCCc--cEEEE
Q 010115 308 C--------------GTKWYIAGGGSRKKRHAETLIFDILKG--EWSVAITSPSSSVTSNKGFTLVLVQHKEK--DFLVA 369 (518)
Q Consensus 308 ~--------------~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~r~~~s~~~~~~~~~--~~l~v 369 (518)
. ++.+++.|+.++. +.+||+.+. .|..+..... .......+.+.. +. ..+++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~~----h~~~v~~~~~sp-~~~~~~~l~ 225 (379)
T 3jrp_A 156 APATIEEDGEHNGTKESRKFVTGGADNL-----VKIWKYNSDAQTYVLESTLEG----HSDWVRDVAWSP-TVLLRSYLA 225 (379)
T ss_dssp CCCC----------CTTCEEEEEETTSC-----EEEEEEETTTTEEEEEEEECC----CSSCEEEEEECC-CCSSSEEEE
T ss_pred cCccccccccccCCCCCCEEEEEeCCCe-----EEEEEecCCCcceeeEEEEec----ccCcEeEEEECC-CCCCCCeEE
Confidence 2 3677888876543 778887554 3544432211 111223333332 21 45777
Q ss_pred EcCCCCCCCCcEEEEEcccCC
Q 010115 370 FGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 370 ~GG~~~~~~~~v~~yd~~~~~ 390 (518)
.|+.++ .+.+||+.+.+
T Consensus 226 s~~~dg----~i~iwd~~~~~ 242 (379)
T 3jrp_A 226 SVSQDR----TCIIWTQDNEQ 242 (379)
T ss_dssp EEETTS----CEEEEEESSTT
T ss_pred EEeCCC----EEEEEeCCCCC
Confidence 777654 57888887653
No 67
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.32 E-value=0.58 Score=50.49 Aligned_cols=132 Identities=13% Similarity=0.083 Sum_probs=74.4
Q ss_pred eEEEEECCEEEEEcCcCCCCCCCcEEEEEcCCC--cEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCC
Q 010115 92 HAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG 169 (518)
Q Consensus 92 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~ 169 (518)
.+-++.++.||+... .+.++.+|..+. .|+.-........ +.........+.++.+++||+....
T Consensus 71 ~~P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~v~v~~~d---- 137 (677)
T 1kb0_A 71 ATPVVVDGIMYVSAS------WSVVHAIDTRTGNRIWTYDPQIDRSTG---FKGCCDVVNRGVALWKGKVYVGAWD---- 137 (677)
T ss_dssp CCCEEETTEEEEECG------GGCEEEEETTTTEEEEEECCCCCGGGG---GGSSSCSCCCCCEEETTEEEEECTT----
T ss_pred eCCEEECCEEEEECC------CCeEEEEECCCCcEEEEEcCCCCcccc---ccccccCCCCCceEECCEEEEEcCC----
Confidence 344667999999865 256899999875 6887543110000 0000001123455678899886432
Q ss_pred CCceeEEEEECCCCc--EEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCc--EEEee
Q 010115 170 SDRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLH 240 (518)
Q Consensus 170 ~~~~~v~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~ 240 (518)
..++.+|.+|++ |+.-.............+-++.++.+|+..+.... ..-..++.||.++.+ |+.-.
T Consensus 138 ---g~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~-~~~g~v~a~D~~tG~~~W~~~~ 208 (677)
T 1kb0_A 138 ---GRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEY-GVRGYITAYDAETGERKWRWFS 208 (677)
T ss_dssp ---SEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTT-CCBCEEEEEETTTCCEEEEEES
T ss_pred ---CEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEeccccc-CCCCEEEEEECCCCcEEEEecc
Confidence 369999998876 87643200000011222335568888875433221 124579999998765 87653
No 68
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=96.32 E-value=0.91 Score=44.41 Aligned_cols=204 Identities=7% Similarity=0.033 Sum_probs=96.8
Q ss_pred EEEEEcCcCCCCCCceeEEEEECCCCc------EEEeeecCCCCC---CCcceEEEEE-----CCEE-EEEcccCCCCcc
Q 010115 158 KVLLVGGKTDSGSDRVSVWTFDTETEC------WSVVEAKGDIPV---ARSGHTVVRA-----SSVL-ILFGGEDGKRRK 222 (518)
Q Consensus 158 ~iyv~GG~~~~~~~~~~v~~yd~~t~~------W~~~~~~~~~p~---~r~~~~~~~~-----~~~i-yv~GG~~~~~~~ 222 (518)
.+++.|+.+. .+..||..+.. +..+.. .+. ...-.++... ++.. ++.|+.++
T Consensus 82 ~~l~s~~~dg------~i~iw~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg---- 148 (397)
T 1sq9_A 82 CLVATTSFSG------DLLFYRITREDETKKVIFEKLDL---LDSDMKKHSFWALKWGASNDRLLSHRLVATDVKG---- 148 (397)
T ss_dssp EEEEEEETTS------CEEEEEEEECTTTCCEEEEEECC---SCTTGGGSCEEEEEEECCC----CEEEEEEETTS----
T ss_pred cEEEEEcCCC------CEEEEEccCCcccccccceeecc---cccccCCCcEEEEEEeeccCCCCceEEEEEeCCC----
Confidence 7777777643 47777777666 666543 210 1122233333 4555 77776553
Q ss_pred cCcEEEEEcCC------Cc---EE---Eeec--CCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEE
Q 010115 223 LNDLHMFDLKS------LT---WL---PLHC--TGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWT 288 (518)
Q Consensus 223 ~~~~~~yd~~t------~~---W~---~~~~--~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 288 (518)
.+.+||+.+ .+ |. .+.. .........-.+++...+. +++.|+.++ .+..||+.+.+-.
T Consensus 149 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg-----~i~i~d~~~~~~~ 220 (397)
T 1sq9_A 149 --TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNG-----TVQISELSTLRPL 220 (397)
T ss_dssp --CEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTS-----EEEEEETTTTEEE
T ss_pred --cEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCC-----cEEEEECCCCcee
Confidence 377777765 21 11 1110 0001112223345556666 777776543 5999999876543
Q ss_pred EeecCC-CC-CCCCcceEEEEE-CCEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCC-------CCCCceEEE
Q 010115 289 RIKIRG-FH-PSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVT-------SNKGFTLVL 358 (518)
Q Consensus 289 ~v~~~~-~~-p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~-------~r~~~s~~~ 358 (518)
..-... .. +....-.+++.. ++++++.|+.++ ....+.+||+.+.+-......+..... .......+.
T Consensus 221 ~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~--~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 298 (397)
T 1sq9_A 221 YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN--SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 298 (397)
T ss_dssp EEEECCC---CCCCCEEEEEECSSTTEEEEEEEET--TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEE
T ss_pred EEEeccccccccCCccceEEECCCCCEEEEEecCC--CCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEE
Confidence 322210 00 001111222222 566777776541 113588999887653332211000000 112223333
Q ss_pred EeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 359 VQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 359 ~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
+.. + +.+++.|+.++ .+.+||+.+.+
T Consensus 299 ~~~-~-~~~l~~~~~dg----~i~iwd~~~~~ 324 (397)
T 1sq9_A 299 FND-S-GETLCSAGWDG----KLRFWDVKTKE 324 (397)
T ss_dssp ECS-S-SSEEEEEETTS----EEEEEETTTTE
T ss_pred ECC-C-CCEEEEEeCCC----eEEEEEcCCCc
Confidence 332 2 33566666543 68888887654
No 69
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=96.28 E-value=0.59 Score=44.74 Aligned_cols=160 Identities=15% Similarity=0.133 Sum_probs=78.0
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCceeE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSV 175 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v 175 (518)
++.+|+.++.+ +.++++|+.+.+....-.. +. ...-+.++.. ++.+|+.+... ..+
T Consensus 10 ~~~~~v~~~~~-----~~v~~~d~~~~~~~~~~~~----------~~-~~~~~~~~~s~dg~~~~v~~~~~------~~i 67 (349)
T 1jmx_B 10 GHEYMIVTNYP-----NNLHVVDVASDTVYKSCVM----------PD-KFGPGTAMMAPDNRTAYVLNNHY------GDI 67 (349)
T ss_dssp TCEEEEEEETT-----TEEEEEETTTTEEEEEEEC----------SS-CCSSCEEEECTTSSEEEEEETTT------TEE
T ss_pred CCEEEEEeCCC-----CeEEEEECCCCcEEEEEec----------CC-CCCCceeEECCCCCEEEEEeCCC------CcE
Confidence 56777777643 5789999988765443221 11 0011233332 34678776432 369
Q ss_pred EEEECCCCcEEEeeecCCCCC--CCcceEEEEE-CC-EEEEEccc--CCCCc---ccCcEEEEEcCCCcEEEeecCCCCC
Q 010115 176 WTFDTETECWSVVEAKGDIPV--ARSGHTVVRA-SS-VLILFGGE--DGKRR---KLNDLHMFDLKSLTWLPLHCTGTGP 246 (518)
Q Consensus 176 ~~yd~~t~~W~~~~~~~~~p~--~r~~~~~~~~-~~-~iyv~GG~--~~~~~---~~~~~~~yd~~t~~W~~~~~~g~~p 246 (518)
++||+.+.+-......+..+. ...-+.++.. ++ .+|+.+.. ..... ..+.+++||+.+.+-..... ..+
T Consensus 68 ~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--~~~ 145 (349)
T 1jmx_B 68 YGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR--TFP 145 (349)
T ss_dssp EEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE--EEE
T ss_pred EEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceee--ecc
Confidence 999999887554332111110 1111233332 33 55554421 00000 12579999987743211100 111
Q ss_pred CCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEE
Q 010115 247 SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR 289 (518)
Q Consensus 247 ~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 289 (518)
.++.-.+++...+..+|+.++ +++++|+.+.+-..
T Consensus 146 ~~~~~~~~~~s~dg~l~~~~~--------~i~~~d~~~~~~~~ 180 (349)
T 1jmx_B 146 MPRQVYLMRAADDGSLYVAGP--------DIYKMDVKTGKYTV 180 (349)
T ss_dssp CCSSCCCEEECTTSCEEEESS--------SEEEECTTTCCEEE
T ss_pred CCCcccceeECCCCcEEEccC--------cEEEEeCCCCceec
Confidence 122233344443333777532 48899987766443
No 70
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=96.26 E-value=0.098 Score=51.78 Aligned_cols=145 Identities=10% Similarity=0.054 Sum_probs=74.8
Q ss_pred CEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCcccCcEEEEEcCCCc
Q 010115 157 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLT 235 (518)
Q Consensus 157 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 235 (518)
+..++.|+... .+..||..+.+-..... ... ..-.+++.. ++.+++.|+.++ .+.+||+.+.+
T Consensus 217 ~~~~~~~~~~g------~i~~~d~~~~~~~~~~~---~~~-~~i~~~~~~~~~~~l~~~~~d~------~i~i~d~~~~~ 280 (425)
T 1r5m_A 217 DDKFVIPGPKG------AIFVYQITEKTPTGKLI---GHH-GPISVLEFNDTNKLLLSASDDG------TLRIWHGGNGN 280 (425)
T ss_dssp TTEEEEECGGG------CEEEEETTCSSCSEEEC---CCS-SCEEEEEEETTTTEEEEEETTS------CEEEECSSSBS
T ss_pred CCEEEEEcCCC------eEEEEEcCCCceeeeec---cCC-CceEEEEECCCCCEEEEEcCCC------EEEEEECCCCc
Confidence 34456666532 58899988765322211 111 111223332 455666666543 47888887654
Q ss_pred EEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEE
Q 010115 236 WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYI 314 (518)
Q Consensus 236 W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~iyv 314 (518)
....- . .....-.+++...+. +++.|+.++ .+..||+.+.+-...... .. ....+++.. ++++++
T Consensus 281 ~~~~~---~-~~~~~i~~~~~~~~~-~l~~~~~d~-----~i~i~d~~~~~~~~~~~~---~~-~~i~~~~~s~~~~~l~ 346 (425)
T 1r5m_A 281 SQNCF---Y-GHSQSIVSASWVGDD-KVISCSMDG-----SVRLWSLKQNTLLALSIV---DG-VPIFAGRISQDGQKYA 346 (425)
T ss_dssp CSEEE---C-CCSSCEEEEEEETTT-EEEEEETTS-----EEEEEETTTTEEEEEEEC---TT-CCEEEEEECTTSSEEE
T ss_pred cceEe---c-CCCccEEEEEECCCC-EEEEEeCCC-----cEEEEECCCCcEeEeccc---CC-ccEEEEEEcCCCCEEE
Confidence 32221 1 111222345555666 666666543 589999877653333221 11 111222222 567777
Q ss_pred EcccCCCCCcCeEEEEECCCCc
Q 010115 315 AGGGSRKKRHAETLIFDILKGE 336 (518)
Q Consensus 315 ~GG~~~~~~~~~v~~yd~~~~~ 336 (518)
.|+.++ .+.+||+.+..
T Consensus 347 ~~~~dg-----~i~i~~~~~~~ 363 (425)
T 1r5m_A 347 VAFMDG-----QVNVYDLKKLN 363 (425)
T ss_dssp EEETTS-----CEEEEECHHHH
T ss_pred EEECCC-----eEEEEECCCCc
Confidence 777553 38888887654
No 71
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.26 E-value=0.44 Score=52.02 Aligned_cols=231 Identities=9% Similarity=0.024 Sum_probs=115.0
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEE-ECCEEEEEcCcCCCCCCceeEE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSGSDRVSVW 176 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~ 176 (518)
++..+++|+.+ ..+.+||..+......-.. ....-.+++. -++..+++|+.++ .+.
T Consensus 24 ~~~~la~~~~~-----g~v~iwd~~~~~~~~~~~~------------~~~~v~~~~~s~~~~~l~~~~~dg------~i~ 80 (814)
T 3mkq_A 24 TEPWVLTTLYS-----GRVEIWNYETQVEVRSIQV------------TETPVRAGKFIARKNWIIVGSDDF------RIR 80 (814)
T ss_dssp SSSEEEEEETT-----SEEEEEETTTTEEEEEEEC------------CSSCEEEEEEEGGGTEEEEEETTS------EEE
T ss_pred CCCEEEEEeCC-----CEEEEEECCCCceEEEEec------------CCCcEEEEEEeCCCCEEEEEeCCC------eEE
Confidence 34566666643 4688999887654332220 0111122222 2456666766532 688
Q ss_pred EEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCC-cEEEeecCCCCCCCCCCcEE
Q 010115 177 TFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL-TWLPLHCTGTGPSPRSNHVA 254 (518)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~~~g~~p~~r~~~~~ 254 (518)
.||..+++....-. ... ..-.+++. -++..++.|+.+ ..+.+||+.+. .....-. .....-.++
T Consensus 81 vw~~~~~~~~~~~~---~~~-~~v~~~~~s~~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~~----~~~~~v~~~ 146 (814)
T 3mkq_A 81 VFNYNTGEKVVDFE---AHP-DYIRSIAVHPTKPYVLSGSDD------LTVKLWNWENNWALEQTFE----GHEHFVMCV 146 (814)
T ss_dssp EEETTTCCEEEEEE---CCS-SCEEEEEECSSSSEEEEEETT------SEEEEEEGGGTSEEEEEEE----CCSSCEEEE
T ss_pred EEECCCCcEEEEEe---cCC-CCEEEEEEeCCCCEEEEEcCC------CEEEEEECCCCceEEEEEc----CCCCcEEEE
Confidence 89998887654332 111 11122222 245556666644 34788998765 3333211 111112233
Q ss_pred EEEC-CcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE---CCEEEEEcccCCCCCcCeEEEE
Q 010115 255 ALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC---GTKWYIAGGGSRKKRHAETLIF 330 (518)
Q Consensus 255 ~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~y 330 (518)
+... +..+++.|+.++ .+..||+.+..-...... ............ ++.+++.|+.++ .+.+|
T Consensus 147 ~~~p~~~~~l~~~~~dg-----~v~vwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg-----~i~~~ 213 (814)
T 3mkq_A 147 AFNPKDPSTFASGCLDR-----TVKVWSLGQSTPNFTLTT---GQERGVNYVDYYPLPDKPYMITASDDL-----TIKIW 213 (814)
T ss_dssp EEETTEEEEEEEEETTS-----EEEEEETTCSSCSEEEEC---CCTTCCCEEEECCSTTCCEEEEECTTS-----EEEEE
T ss_pred EEEcCCCCEEEEEeCCC-----eEEEEECCCCcceeEEec---CCCCCEEEEEEEECCCCCEEEEEeCCC-----EEEEE
Confidence 3443 333677776543 588999865442222211 111112222222 566777777543 48899
Q ss_pred ECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 331 DILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 331 d~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
|+.+.+-...... .......+.+.. ++.+++.|+.++ .+.+||+.+.+
T Consensus 214 d~~~~~~~~~~~~------~~~~v~~~~~~~--~~~~l~~~~~dg----~v~vwd~~~~~ 261 (814)
T 3mkq_A 214 DYQTKSCVATLEG------HMSNVSFAVFHP--TLPIIISGSEDG----TLKIWNSSTYK 261 (814)
T ss_dssp ETTTTEEEEEEEC------CSSCEEEEEECS--SSSEEEEEETTS----CEEEEETTTCS
T ss_pred ECCCCcEEEEEcC------CCCCEEEEEEcC--CCCEEEEEeCCC----eEEEEECCCCc
Confidence 9887654332211 111233344432 233666777643 57778876543
No 72
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=96.25 E-value=1.1 Score=44.96 Aligned_cols=234 Identities=13% Similarity=0.109 Sum_probs=115.0
Q ss_pred EEECCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcee
Q 010115 95 AVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVS 174 (518)
Q Consensus 95 ~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 174 (518)
...++.+++.|+.+ ..+.+||..+.+-...-. .....-.+++...+.+++.|+.+. .
T Consensus 128 ~~~~~~~l~sgs~d-----g~i~vwd~~~~~~~~~~~------------~h~~~V~~l~~~~~~~l~s~s~dg------~ 184 (464)
T 3v7d_B 128 LQFEDNYVITGADD-----KMIRVYDSINKKFLLQLS------------GHDGGVWALKYAHGGILVSGSTDR------T 184 (464)
T ss_dssp EEEETTEEEEEETT-----SCEEEEETTTTEEEEEEC------------CCSSCEEEEEECSTTEEEEEETTS------C
T ss_pred EEECCCEEEEEcCC-----CcEEEEECCCCcEEEEEe------------CCCcCEEEEEEcCCCEEEEEeCCC------C
Confidence 33455566667654 468899987764322111 011111223333333667776643 5
Q ss_pred EEEEECCCCcEEEeeecCCCCCCCcceEEEEE---CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecC-C-------
Q 010115 175 VWTFDTETECWSVVEAKGDIPVARSGHTVVRA---SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT-G------- 243 (518)
Q Consensus 175 v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~-g------- 243 (518)
+..+|+.+.+-...-. .... .-.++... ++.+++.|+.++ .+.+||+.+..-...... .
T Consensus 185 i~vwd~~~~~~~~~~~---~h~~-~v~~l~~~~~~~~~~l~s~s~d~------~i~vwd~~~~~~~~~~~~~~~~~~~~~ 254 (464)
T 3v7d_B 185 VRVWDIKKGCCTHVFE---GHNS-TVRCLDIVEYKNIKYIVTGSRDN------TLHVWKLPKESSVPDHGEEHDYPLVFH 254 (464)
T ss_dssp EEEEETTTTEEEEEEC---CCSS-CEEEEEEEESSSCEEEEEEETTS------CEEEEECCCCCCC------CCSSEEES
T ss_pred EEEEECCCCcEEEEEC---CCCC-ccEEEEEecCCCCCEEEEEcCCC------cEEEeeCCCCcccccccccCCcceEee
Confidence 8889998876433221 1111 11222222 457777777654 367778765432110000 0
Q ss_pred ----------CCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCEE
Q 010115 244 ----------TGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKW 312 (518)
Q Consensus 244 ----------~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~i 312 (518)
..........+...++. +++.|+.++ .+..||+.+.+-...-.. ....-.+++.. +++.
T Consensus 255 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~d~-----~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~ 324 (464)
T 3v7d_B 255 TPEENPYFVGVLRGHMASVRTVSGHGN-IVVSGSYDN-----TLIVWDVAQMKCLYILSG----HTDRIYSTIYDHERKR 324 (464)
T ss_dssp CGGGCTTEEEEECCCSSCEEEEEEETT-EEEEEETTS-----CEEEEETTTTEEEEEECC----CSSCEEEEEEETTTTE
T ss_pred ccCCCeEEEEEccCccceEEEEcCCCC-EEEEEeCCC-----eEEEEECCCCcEEEEecC----CCCCEEEEEEcCCCCE
Confidence 00001111122234455 666676554 499999887654332211 11112223333 5667
Q ss_pred EEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 313 YIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 313 yv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
++.|+.++. +.+||+.+.+-..... . .......+.+. + ..++.|+.++ .+.+||+.+.+
T Consensus 325 l~sg~~dg~-----i~vwd~~~~~~~~~~~--~----h~~~v~~~~~~--~--~~l~s~s~dg----~v~vwd~~~~~ 383 (464)
T 3v7d_B 325 CISASMDTT-----IRIWDLENGELMYTLQ--G----HTALVGLLRLS--D--KFLVSAAADG----SIRGWDANDYS 383 (464)
T ss_dssp EEEEETTSC-----EEEEETTTTEEEEEEC--C----CSSCEEEEEEC--S--SEEEEEETTS----EEEEEETTTCC
T ss_pred EEEEeCCCc-----EEEEECCCCcEEEEEe--C----CCCcEEEEEEc--C--CEEEEEeCCC----cEEEEECCCCc
Confidence 777776543 8999998765433221 1 11112333332 2 3556666653 58888887654
No 73
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.23 E-value=0.65 Score=50.68 Aligned_cols=191 Identities=14% Similarity=0.062 Sum_probs=96.6
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCceeEE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~ 176 (518)
++..++.|+.+ ..+.+||..+......-.. ....-.+++.. ++..++.|+.+. .+.
T Consensus 66 ~~~~l~~~~~d-----g~i~vw~~~~~~~~~~~~~------------~~~~v~~~~~s~~~~~l~~~~~dg------~i~ 122 (814)
T 3mkq_A 66 RKNWIIVGSDD-----FRIRVFNYNTGEKVVDFEA------------HPDYIRSIAVHPTKPYVLSGSDDL------TVK 122 (814)
T ss_dssp GGTEEEEEETT-----SEEEEEETTTCCEEEEEEC------------CSSCEEEEEECSSSSEEEEEETTS------EEE
T ss_pred CCCEEEEEeCC-----CeEEEEECCCCcEEEEEec------------CCCCEEEEEEeCCCCEEEEEcCCC------EEE
Confidence 45566777653 4688999888765433220 01111122222 455556666532 578
Q ss_pred EEECCCC-cEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcE
Q 010115 177 TFDTETE-CWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV 253 (518)
Q Consensus 177 ~yd~~t~-~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~ 253 (518)
.||..++ ....... .....-.+++.. ++.+++.|+.++ .+.+||+.+.+-.... ..........
T Consensus 123 vw~~~~~~~~~~~~~----~~~~~v~~~~~~p~~~~~l~~~~~dg------~v~vwd~~~~~~~~~~---~~~~~~~v~~ 189 (814)
T 3mkq_A 123 LWNWENNWALEQTFE----GHEHFVMCVAFNPKDPSTFASGCLDR------TVKVWSLGQSTPNFTL---TTGQERGVNY 189 (814)
T ss_dssp EEEGGGTSEEEEEEE----CCSSCEEEEEEETTEEEEEEEEETTS------EEEEEETTCSSCSEEE---ECCCTTCCCE
T ss_pred EEECCCCceEEEEEc----CCCCcEEEEEEEcCCCCEEEEEeCCC------eEEEEECCCCcceeEE---ecCCCCCEEE
Confidence 8888776 3322221 111112233333 456777776553 4888998654422221 1111122223
Q ss_pred EEEE---CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCCCcCeEEE
Q 010115 254 AALY---DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLI 329 (518)
Q Consensus 254 ~~~~---~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~ 329 (518)
++.. ++. +++.|+.++ .+..||..+..-...-.. ... ...+++.. ++.+++.|+.++. +.+
T Consensus 190 ~~~~~~~~~~-~l~~~~~dg-----~i~~~d~~~~~~~~~~~~---~~~-~v~~~~~~~~~~~l~~~~~dg~-----v~v 254 (814)
T 3mkq_A 190 VDYYPLPDKP-YMITASDDL-----TIKIWDYQTKSCVATLEG---HMS-NVSFAVFHPTLPIIISGSEDGT-----LKI 254 (814)
T ss_dssp EEECCSTTCC-EEEEECTTS-----EEEEEETTTTEEEEEEEC---CSS-CEEEEEECSSSSEEEEEETTSC-----EEE
T ss_pred EEEEECCCCC-EEEEEeCCC-----EEEEEECCCCcEEEEEcC---CCC-CEEEEEEcCCCCEEEEEeCCCe-----EEE
Confidence 3333 445 677776543 589999877653322111 111 11122222 5667777776543 888
Q ss_pred EECCCCceEE
Q 010115 330 FDILKGEWSV 339 (518)
Q Consensus 330 yd~~~~~W~~ 339 (518)
||+.+.+-..
T Consensus 255 wd~~~~~~~~ 264 (814)
T 3mkq_A 255 WNSSTYKVEK 264 (814)
T ss_dssp EETTTCSEEE
T ss_pred EECCCCcEEE
Confidence 8988765433
No 74
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.86 Score=43.73 Aligned_cols=200 Identities=9% Similarity=0.010 Sum_probs=95.2
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCceeEE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~ 176 (518)
++++++.|+.+ ..+.+||..+..-...-. .....-.+++.. +++.++.|+.+. .+.
T Consensus 43 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~------------~h~~~v~~~~~~~~~~~l~s~~~dg------~i~ 99 (369)
T 3zwl_B 43 EGDLLFSCSKD-----SSASVWYSLNGERLGTLD------------GHTGTIWSIDVDCFTKYCVTGSADY------SIK 99 (369)
T ss_dssp TSCEEEEEESS-----SCEEEEETTTCCEEEEEC------------CCSSCEEEEEECTTSSEEEEEETTT------EEE
T ss_pred CCCEEEEEeCC-----CEEEEEeCCCchhhhhhh------------hcCCcEEEEEEcCCCCEEEEEeCCC------eEE
Confidence 45566666644 368889987764332211 011111222222 456666776543 688
Q ss_pred EEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCCc----EEEeecCC-----CCC
Q 010115 177 TFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLT----WLPLHCTG-----TGP 246 (518)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~----W~~~~~~g-----~~p 246 (518)
.||+.+.+-..... .+. .-.++.. -++..++.++.+.. .....+.+||+.+.. +....... ...
T Consensus 100 iwd~~~~~~~~~~~---~~~--~v~~~~~~~~~~~l~~~~~~~~-~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (369)
T 3zwl_B 100 LWDVSNGQCVATWK---SPV--PVKRVEFSPCGNYFLAILDNVM-KNPGSINIYEIERDSATHELTKVSEEPIHKIITHE 173 (369)
T ss_dssp EEETTTCCEEEEEE---CSS--CEEEEEECTTSSEEEEEECCBT-TBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCT
T ss_pred EEECCCCcEEEEee---cCC--CeEEEEEccCCCEEEEecCCcc-CCCCEEEEEEecCCccceeecccccceeeeccCCc
Confidence 89998877544432 111 1122222 24555555554311 123457777775432 22211000 000
Q ss_pred CCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCC-CeEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCCCc
Q 010115 247 SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET-MIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRH 324 (518)
Q Consensus 247 ~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~-~~W~~v~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~ 324 (518)
......+++...+..+++.|+.++ .+..||+.+ ..-...-.. ....-.+++.. ++.+++.|+.++
T Consensus 174 ~~~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~---- 240 (369)
T 3zwl_B 174 GLDAATVAGWSTKGKYIIAGHKDG-----KISKYDVSNNYEYVDSIDL----HEKSISDMQFSPDLTYFITSSRDT---- 240 (369)
T ss_dssp TCCCEEEEEECGGGCEEEEEETTS-----EEEEEETTTTTEEEEEEEC----CSSCEEEEEECTTSSEEEEEETTS----
T ss_pred CccceeEEEEcCCCCEEEEEcCCC-----EEEEEECCCCcEeEEEEec----CCCceeEEEECCCCCEEEEecCCc----
Confidence 000122233333333666665543 599999987 332222111 11111222222 566677776543
Q ss_pred CeEEEEECCCCceEEe
Q 010115 325 AETLIFDILKGEWSVA 340 (518)
Q Consensus 325 ~~v~~yd~~~~~W~~~ 340 (518)
.+.+||+.+.+....
T Consensus 241 -~i~v~d~~~~~~~~~ 255 (369)
T 3zwl_B 241 -NSFLVDVSTLQVLKK 255 (369)
T ss_dssp -EEEEEETTTCCEEEE
T ss_pred -eEEEEECCCCceeee
Confidence 489999988765543
No 75
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=96.18 E-value=0.4 Score=45.58 Aligned_cols=237 Identities=10% Similarity=-0.045 Sum_probs=117.4
Q ss_pred ccceEEEEE--CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcCc
Q 010115 89 RFNHAAAVI--GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGK 165 (518)
Q Consensus 89 R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~ 165 (518)
..+.+.+.. ++.||+..-.. ..+++||+.+..-..... +.. -.+++.. ++++|+..+
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~-----~~i~~~d~~~~~~~~~~~-------------~~~-~~~i~~~~dG~l~v~~~- 72 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPA-----KKVCRWDSFTKQVQRVTM-------------DAP-VSSVALRQSGGYVATIG- 72 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTT-----TEEEEEETTTCCEEEEEC-------------SSC-EEEEEEBTTSSEEEEET-
T ss_pred ccccCCeEECCCCEEEEEECCC-----CEEEEEECCCCcEEEEeC-------------CCc-eEEEEECCCCCEEEEEC-
Confidence 344455555 36788876532 568999999876544332 111 1233332 456666431
Q ss_pred CCCCCCceeEEEEECCCCcEEEeeecCC-CCCCCcceEEEEECCEEEEEcccCCC-----CcccCcEEEEEcCCCcEEEe
Q 010115 166 TDSGSDRVSVWTFDTETECWSVVEAKGD-IPVARSGHTVVRASSVLILFGGEDGK-----RRKLNDLHMFDLKSLTWLPL 239 (518)
Q Consensus 166 ~~~~~~~~~v~~yd~~t~~W~~~~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~-----~~~~~~~~~yd~~t~~W~~~ 239 (518)
..+++||+.+++++.+..... .+..+.....+--++++|+-.-.... ......++++|+. .+...+
T Consensus 73 -------~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~ 144 (297)
T 3g4e_A 73 -------TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKY 144 (297)
T ss_dssp -------TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEE
T ss_pred -------CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEE
Confidence 269999999999887764211 11112222222225677764211110 0123468888875 333333
Q ss_pred ecCCCCCCCCCCcEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEc--CCCeEEEeecCCCCCC-CCcceEEEEE-CCEEEE
Q 010115 240 HCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDF--ETMIWTRIKIRGFHPS-PRAGCCGVLC-GTKWYI 314 (518)
Q Consensus 240 ~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~--~~~~W~~v~~~~~~p~-~r~~~~~~~~-~~~iyv 314 (518)
.. ....+ ...+.. +++.+|+.... .+.|++||. ++............+. ...-.++++. +++||+
T Consensus 145 ~~--~~~~p---ngi~~spdg~~lyv~~~~-----~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwv 214 (297)
T 3g4e_A 145 FD--QVDIS---NGLDWSLDHKIFYYIDSL-----SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWV 214 (297)
T ss_dssp EE--EESBE---EEEEECTTSCEEEEEEGG-----GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEE
T ss_pred ee--ccccc---cceEEcCCCCEEEEecCC-----CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEE
Confidence 21 11111 233443 34457776532 246899986 4544322111000011 1111233333 678888
Q ss_pred EcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCC
Q 010115 315 AGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK 374 (518)
Q Consensus 315 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~ 374 (518)
..-.. ..+++||+++.+.......| ...-..+++..++.+.|||.....
T Consensus 215 a~~~~-----~~v~~~d~~tG~~~~~i~~p------~~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 215 ACYNG-----GRVIRLDPVTGKRLQTVKLP------VDKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp EEETT-----TEEEEECTTTCCEEEEEECS------SSBEEEEEEESGGGCEEEEEEBCT
T ss_pred EEcCC-----CEEEEEcCCCceEEEEEECC------CCCceEEEEeCCCCCEEEEEcCCc
Confidence 75322 34999999976654433222 122344555433446788766543
No 76
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=96.17 E-value=1 Score=43.62 Aligned_cols=190 Identities=9% Similarity=0.089 Sum_probs=96.3
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCceeE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSV 175 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v 175 (518)
++++++.||.+ ..+.++|..++.|....... ......-..+.+ ++..++.|+.+. .+
T Consensus 27 ~g~~las~~~D-----~~i~iw~~~~~~~~~~~~~~----------~~h~~~v~~~~~sp~g~~l~s~s~D~------~v 85 (345)
T 3fm0_A 27 AGTLLASCGGD-----RRIRIWGTEGDSWICKSVLS----------EGHQRTVRKVAWSPCGNYLASASFDA------TT 85 (345)
T ss_dssp TSSCEEEEETT-----SCEEEEEEETTEEEEEEEEC----------SSCSSCEEEEEECTTSSEEEEEETTS------CE
T ss_pred CCCEEEEEcCC-----CeEEEEEcCCCcceeeeeec----------cccCCcEEEEEECCCCCEEEEEECCC------cE
Confidence 45677777755 35888898888876433210 000111222333 566777777643 46
Q ss_pred EEEECCCCcEEEeeecCCCCCCCc-ceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCC-cEEEeecCCCCCCCCCCc
Q 010115 176 WTFDTETECWSVVEAKGDIPVARS-GHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL-TWLPLHCTGTGPSPRSNH 252 (518)
Q Consensus 176 ~~yd~~t~~W~~~~~~~~~p~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~~~g~~p~~r~~~ 252 (518)
..+|..+..+..+.. +..... -.+++. -++.+++.|+.+. .+.++|+.+. .+..+... ... ...-.
T Consensus 86 ~iw~~~~~~~~~~~~---~~~h~~~v~~v~~sp~~~~l~s~s~D~------~v~iwd~~~~~~~~~~~~~-~~h-~~~v~ 154 (345)
T 3fm0_A 86 CIWKKNQDDFECVTT---LEGHENEVKSVAWAPSGNLLATCSRDK------SVWVWEVDEEDEYECVSVL-NSH-TQDVK 154 (345)
T ss_dssp EEEEECCC-EEEEEE---ECCCSSCEEEEEECTTSSEEEEEETTS------CEEEEEECTTSCEEEEEEE-CCC-CSCEE
T ss_pred EEEEccCCCeEEEEE---ccCCCCCceEEEEeCCCCEEEEEECCC------eEEEEECCCCCCeEEEEEe-cCc-CCCeE
Confidence 677777776655443 211111 122222 2467777777654 3778887654 33333211 111 11111
Q ss_pred EEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCCCcCeEEEEE
Q 010115 253 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFD 331 (518)
Q Consensus 253 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd 331 (518)
+++...+..+++.|+.++ .+..||..+..|..+..... ....-.+++.. +++.++.|+.++. +.++|
T Consensus 155 ~~~~~p~~~~l~s~s~d~-----~i~~w~~~~~~~~~~~~~~~--h~~~v~~l~~sp~g~~l~s~s~D~~-----v~iW~ 222 (345)
T 3fm0_A 155 HVVWHPSQELLASASYDD-----TVKLYREEEDDWVCCATLEG--HESTVWSLAFDPSGQRLASCSDDRT-----VRIWR 222 (345)
T ss_dssp EEEECSSSSCEEEEETTS-----CEEEEEEETTEEEEEEEECC--CSSCEEEEEECTTSSEEEEEETTSC-----EEEEE
T ss_pred EEEECCCCCEEEEEeCCC-----cEEEEEecCCCEEEEEEecC--CCCceEEEEECCCCCEEEEEeCCCe-----EEEec
Confidence 233333333677776654 48888988888876544311 11111222222 5677777776543 55555
No 77
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=96.11 E-value=0.85 Score=44.48 Aligned_cols=189 Identities=11% Similarity=0.045 Sum_probs=92.1
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCcccCcEEEEEcCC
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS 233 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t 233 (518)
+++.++.|+.+. .+..+|+.+++-...-. -..... .+++.. +..+++.|+.+. .+.+||+.+
T Consensus 138 dg~~l~sgs~d~------~i~iwd~~~~~~~~~~~---~h~~~V-~~~~~~~~~~~~l~s~s~D~------~v~iwd~~~ 201 (344)
T 4gqb_B 138 SGTQAVSGSKDI------CIKVWDLAQQVVLSSYR---AHAAQV-TCVAASPHKDSVFLSCSEDN------RILLWDTRC 201 (344)
T ss_dssp TSSEEEEEETTS------CEEEEETTTTEEEEEEC---CCSSCE-EEEEECSSCTTEEEEEETTS------CEEEEETTS
T ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEEEEc---CcCCce-EEEEecCCCCCceeeecccc------ccccccccc
Confidence 567777777643 58888998876432211 011111 122222 235777777654 378899887
Q ss_pred CcEEEeecCCCCCCCCCCc-EEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CC
Q 010115 234 LTWLPLHCTGTGPSPRSNH-VAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GT 310 (518)
Q Consensus 234 ~~W~~~~~~g~~p~~r~~~-~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~ 310 (518)
.+-...- ......... +++.. .+..+++.|+.++ .|..||+.+.+- +.... .....-.+++.. ++
T Consensus 202 ~~~~~~~---~~~~~~~~~~~~~~~p~~~~~l~sg~~dg-----~v~~wd~~~~~~--~~~~~--~h~~~v~~v~fsp~g 269 (344)
T 4gqb_B 202 PKPASQI---GCSAPGYLPTSLAWHPQQSEVFVFGDENG-----TVSLVDTKSTSC--VLSSA--VHSQCVTGLVFSPHS 269 (344)
T ss_dssp SSCEEEC---C----CCCEEEEEECSSCTTEEEEEETTS-----EEEEEESCC--C--CEEEE--CCSSCEEEEEECSSS
T ss_pred cceeeee---ecceeeccceeeeecCCCCcceEEeccCC-----cEEEEECCCCcE--EEEEc--CCCCCEEEEEEccCC
Confidence 6543321 111111111 22222 2333777776554 488899876431 11110 011111222222 33
Q ss_pred -EEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccC
Q 010115 311 -KWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (518)
Q Consensus 311 -~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~ 389 (518)
++++.|+.++. +.+||..+.+-..+... ......+.+. ++...|++.||.++ .|.++++.+.
T Consensus 270 ~~~lasgs~D~~-----i~vwd~~~~~~~~~~~H-------~~~V~~v~~s-p~~~~llas~s~D~----~v~~w~v~~~ 332 (344)
T 4gqb_B 270 VPFLASLSEDCS-----LAVLDSSLSELFRSQAH-------RDFVRDATWS-PLNHSLLTTVGWDH----QVVHHVVPTE 332 (344)
T ss_dssp SCCEEEEETTSC-----EEEECTTCCEEEEECCC-------SSCEEEEEEC-SSSTTEEEEEETTS----CEEEEECCC-
T ss_pred CeEEEEEeCCCe-----EEEEECCCCcEEEEcCC-------CCCEEEEEEe-CCCCeEEEEEcCCC----eEEEEECCCC
Confidence 56667776543 88899888764432210 1112233332 23345777788764 4666666543
No 78
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=96.07 E-value=0.93 Score=42.22 Aligned_cols=226 Identities=11% Similarity=-0.024 Sum_probs=118.4
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCceeEE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~ 176 (518)
++.+|+.... ...+.+||+. ..+...... .....-++++.. ++.+|+..... ..++
T Consensus 25 ~g~l~v~~~~-----~~~v~~~d~~-~~~~~~~~~-----------~~~~~~~~i~~~~~g~l~v~~~~~------~~i~ 81 (299)
T 2z2n_A 25 KGKVWITQHK-----ANMISCINLD-GKITEYPLP-----------TPDAKVMCLTISSDGEVWFTENAA------NKIG 81 (299)
T ss_dssp TSCEEEEETT-----TTEEEEECTT-CCEEEEECS-----------STTCCEEEEEECTTSCEEEEETTT------TEEE
T ss_pred CCCEEEEecC-----CCcEEEEcCC-CCeEEecCC-----------cccCceeeEEECCCCCEEEeCCCC------CeEE
Confidence 4678875431 2468899988 666655421 011122344443 56788875422 2588
Q ss_pred EEECCCCcEEEeeecCCCC-CCCcceEEEEE-CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEE
Q 010115 177 TFDTETECWSVVEAKGDIP-VARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (518)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p-~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~ 254 (518)
+||+. .+.+... +| ....-+.++.. ++.+|+.... ...++++|+ +.+........ ....-..+
T Consensus 82 ~~~~~-g~~~~~~----~~~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~d~-~g~~~~~~~~~---~~~~~~~i 146 (299)
T 2z2n_A 82 RITKK-GIIKEYT----LPNPDSAPYGITEGPNGDIWFTEMN------GNRIGRITD-DGKIREYELPN---KGSYPSFI 146 (299)
T ss_dssp EECTT-SCEEEEE----CSSTTCCEEEEEECTTSCEEEEETT------TTEEEEECT-TCCEEEEECSS---TTCCEEEE
T ss_pred EECCC-CcEEEEe----CCCcCCCceeeEECCCCCEEEEecC------CceEEEECC-CCCEEEecCCC---CCCCCceE
Confidence 99986 5555554 22 12223344443 4788886432 245888998 66666553211 11122334
Q ss_pred EEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCCCcCeEEEEECC
Q 010115 255 ALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDIL 333 (518)
Q Consensus 255 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~ 333 (518)
+...+..+|+.... .+.+++||+ +.+...+.... ....-.+.+.. ++++|+..... +.+.+||+
T Consensus 147 ~~~~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~~~- 211 (299)
T 2z2n_A 147 TLGSDNALWFTENQ-----NNAIGRITE-SGDITEFKIPT---PASGPVGITKGNDDALWFVEIIG-----NKIGRITT- 211 (299)
T ss_dssp EECTTSCEEEEETT-----TTEEEEECT-TCCEEEEECSS---TTCCEEEEEECTTSSEEEEETTT-----TEEEEECT-
T ss_pred EEcCCCCEEEEeCC-----CCEEEEEcC-CCcEEEeeCCC---CCCcceeEEECCCCCEEEEccCC-----ceEEEECC-
Confidence 44434347775421 246999999 77776653221 11111233333 56788875322 45899999
Q ss_pred CCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcc
Q 010115 334 KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIE 387 (518)
Q Consensus 334 ~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~ 387 (518)
+.++..... + ........+.+.. ++.||+.... .+.+.+||+.
T Consensus 212 ~g~~~~~~~-~----~~~~~~~~i~~~~--~g~l~v~~~~----~~~i~~~d~~ 254 (299)
T 2z2n_A 212 SGEITEFKI-P----TPNARPHAITAGA--GIDLWFTEWG----ANKIGRLTSN 254 (299)
T ss_dssp TCCEEEEEC-S----STTCCEEEEEECS--TTCEEEEETT----TTEEEEEETT
T ss_pred CCcEEEEEC-C----CCCCCceeEEECC--CCCEEEeccC----CceEEEECCC
Confidence 777765432 1 1111122333332 2457765422 2368888873
No 79
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.05 E-value=0.43 Score=52.42 Aligned_cols=225 Identities=10% Similarity=0.044 Sum_probs=118.0
Q ss_pred cEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecC-
Q 010115 115 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG- 192 (518)
Q Consensus 115 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~- 192 (518)
.+++||+.+.++....... ...+...-.+++.. ++.|++-.. . -+++||+.+++|+......
T Consensus 428 Gl~~~d~~~~~~~~~~~~~--------~~l~~~~v~~i~~d~~g~lwigt~-~-------Gl~~~~~~~~~~~~~~~~~~ 491 (795)
T 4a2l_A 428 GLSILHRNSGQVENFNQRN--------SQLVNENVYAILPDGEGNLWLGTL-S-------ALVRFNPEQRSFTTIEKEKD 491 (795)
T ss_dssp EEEEEETTTCCEEEECTTT--------SCCSCSCEEEEEECSSSCEEEEES-S-------CEEEEETTTTEEEECCBCTT
T ss_pred ceeEEeCCCCcEEEeecCC--------CCcCCCeeEEEEECCCCCEEEEec-C-------ceeEEeCCCCeEEEcccccc
Confidence 3666777766666554310 01111122333333 466776532 2 3899999999998875320
Q ss_pred --CCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecC---CCCCCCCCCcEEEEECCcEEEEEc
Q 010115 193 --DIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT---GTGPSPRSNHVAALYDDKNLLIFG 266 (518)
Q Consensus 193 --~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~---g~~p~~r~~~~~~~~~~~~lyv~G 266 (518)
.++.... .++.. -++.||+... ..+++||+.+.++ ..... ..++.. .-.+.+...+..|++..
T Consensus 492 ~~~~~~~~i-~~i~~d~~g~lWigt~--------~Gl~~~~~~~~~~-~~~~~~~~~~l~~~-~i~~i~~d~~g~lWigT 560 (795)
T 4a2l_A 492 GTPVVSKQI-TTLFRDSHKRLWIGGE--------EGLSVFKQEGLDI-QKASILPVSNVTKL-FTNCIYEASNGIIWVGT 560 (795)
T ss_dssp CCBCCCCCE-EEEEECTTCCEEEEES--------SCEEEEEEETTEE-EECCCSCSCGGGGS-CEEEEEECTTSCEEEEE
T ss_pred ccccCCceE-EEEEECCCCCEEEEeC--------CceEEEeCCCCeE-EEecCCCCCCCCCC-eeEEEEECCCCCEEEEe
Confidence 1111111 22222 2467887532 2488999999888 54310 011111 11122222333366643
Q ss_pred CCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCC
Q 010115 267 GSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPS 345 (518)
Q Consensus 267 G~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 345 (518)
. +.+++||+++++++........|... ..+++.. ++.|++.+. .-+.+||+.+.+++.......
T Consensus 561 ~-------~Gl~~~d~~~~~~~~~~~~~gl~~~~-i~~i~~d~~g~lWi~t~-------~Gl~~~~~~~~~~~~~~~~dG 625 (795)
T 4a2l_A 561 R-------EGFYCFNEKDKQIKRYNTTNGLPNNV-VYGILEDSFGRLWLSTN-------RGISCFNPETEKFRNFTESDG 625 (795)
T ss_dssp S-------SCEEEEETTTTEEEEECGGGTCSCSC-EEEEEECTTSCEEEEET-------TEEEEEETTTTEEEEECGGGT
T ss_pred C-------CCceeECCCCCcEEEeCCCCCCchhh-eEEEEECCCCCEEEEcC-------CceEEEcCCCCcEEEcCCcCC
Confidence 2 14999999999998875432223322 2333333 578888753 248899999999887653221
Q ss_pred CCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 346 SSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 346 ~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
.+.......++... .++.| .|||.+ .+..|+++...
T Consensus 626 -l~~~~f~~~~~~~~--~~G~l-~~g~~~-----Gl~~~~p~~~~ 661 (795)
T 4a2l_A 626 -LQSNQFNTASYCRT--SVGQM-YFGGIN-----GITTFRPELLL 661 (795)
T ss_dssp -CSCSCEEEEEEEEC--TTSCE-EEEETT-----EEEEECGGGCC
T ss_pred -CccccCccCceeEC--CCCeE-EEecCC-----ceEEEcHHHcc
Confidence 11111111233332 23444 467765 57889887644
No 80
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=96.04 E-value=1.1 Score=48.20 Aligned_cols=158 Identities=9% Similarity=0.027 Sum_probs=80.6
Q ss_pred ceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCC-cEEEeecCCCCCCCC
Q 010115 172 RVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL-TWLPLHCTGTGPSPR 249 (518)
Q Consensus 172 ~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~~~g~~p~~r 249 (518)
...++++|+.+.+-..+.. .......-..++. -+++.++++..+.. .....++.+|+.+. .+..+.........-
T Consensus 234 ~~~l~~~d~~~~~~~~~~~--~~~~~~~~~~~~~spdg~~l~~~~~~~~-~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~ 310 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQT--GEPKEKFLTNLSWSPDENILYVAEVNRA-QNECKVNAYDAETGRFVRTLFVETDKHYVE 310 (706)
T ss_dssp EEEEEEEETTTTEEEECCC--CSCTTCEEEEEEECTTSSEEEEEEECTT-SCEEEEEEEETTTCCEEEEEEEEECSSCCC
T ss_pred eeEEEEEECCCCceEeecc--CCCCceeEeeEEEECCCCEEEEEEeCCC-CCeeEEEEEECCCCceeeEEEEccCCCeEC
Confidence 4579999999987655442 0011111122222 24544444443332 23457999999988 676653211100000
Q ss_pred CCcEEEEEC--CcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE--CC-EEEEEcccCCCCCc
Q 010115 250 SNHVAALYD--DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GT-KWYIAGGGSRKKRH 324 (518)
Q Consensus 250 ~~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~ 324 (518)
....++... +..+++.+..++ ...+|.+|........+... ... ....+.+ ++ .||+.+.. .....
T Consensus 311 ~~~~~~~sp~~dg~~l~~~~~~g---~~~l~~~~~~~~~~~~l~~~---~~~--v~~~~~~spdg~~l~~~~~~-~~~~~ 381 (706)
T 2z3z_A 311 PLHPLTFLPGSNNQFIWQSRRDG---WNHLYLYDTTGRLIRQVTKG---EWE--VTNFAGFDPKGTRLYFESTE-ASPLE 381 (706)
T ss_dssp CCSCCEECTTCSSEEEEEECTTS---SCEEEEEETTSCEEEECCCS---SSC--EEEEEEECTTSSEEEEEESS-SCTTC
T ss_pred ccCCceeecCCCCEEEEEEccCC---ccEEEEEECCCCEEEecCCC---CeE--EEeeeEEcCCCCEEEEEecC-CCCce
Confidence 011233433 333555554432 35799999877777766431 111 1121233 34 56655543 22223
Q ss_pred CeEEEEECCCCceEEee
Q 010115 325 AETLIFDILKGEWSVAI 341 (518)
Q Consensus 325 ~~v~~yd~~~~~W~~~~ 341 (518)
..+|.+|+.+...+.+.
T Consensus 382 ~~l~~~d~~~~~~~~l~ 398 (706)
T 2z3z_A 382 RHFYCIDIKGGKTKDLT 398 (706)
T ss_dssp BEEEEEETTCCCCEESC
T ss_pred EEEEEEEcCCCCceecc
Confidence 57899999888766654
No 81
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=96.04 E-value=0.97 Score=42.12 Aligned_cols=226 Identities=9% Similarity=-0.023 Sum_probs=117.1
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCceeEE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~ 176 (518)
++.||+.... .+.+.+||+. .+....... .....-++++.. ++.+|+..... ..++
T Consensus 30 ~g~l~v~~~~-----~~~v~~~~~~-~~~~~~~~~-----------~~~~~~~~i~~~~~g~l~v~~~~~------~~v~ 86 (300)
T 2qc5_A 30 DGKVWFTQHK-----ANKISSLDQS-GRIKEFEVP-----------TPDAKVMCLIVSSLGDIWFTENGA------NKIG 86 (300)
T ss_dssp TSCEEEEETT-----TTEEEEECTT-SCEEEEECS-----------STTCCEEEEEECTTSCEEEEETTT------TEEE
T ss_pred CCCEEEEcCC-----CCeEEEECCC-CceEEEECC-----------CCCCcceeEEECCCCCEEEEecCC------CeEE
Confidence 4678886532 2468889988 666554321 111122344443 46788864321 2589
Q ss_pred EEECCCCcEEEeeecCCCCC-CCcceEEEEE-CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEE
Q 010115 177 TFDTETECWSVVEAKGDIPV-ARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (518)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~-~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~ 254 (518)
+||+. .++..... +. ...-+.++.. ++.+|+.... ...+.+||+. .+........ ....-..+
T Consensus 87 ~~d~~-g~~~~~~~----~~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~-g~~~~~~~~~---~~~~~~~i 151 (300)
T 2qc5_A 87 KLSKK-GGFTEYPL----PQPDSGPYGITEGLNGDIWFTQLN------GDRIGKLTAD-GTIYEYDLPN---KGSYPAFI 151 (300)
T ss_dssp EECTT-SCEEEEEC----SSTTCCEEEEEECSTTCEEEEETT------TTEEEEECTT-SCEEEEECSS---TTCCEEEE
T ss_pred EECCC-CCeEEecC----CCCCCCCccceECCCCCEEEEccC------CCeEEEECCC-CCEEEccCCC---CCCCceeE
Confidence 99988 77765542 21 1223344443 5788886432 2358889987 6665543111 11122233
Q ss_pred EEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCCCcCeEEEEECC
Q 010115 255 ALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDIL 333 (518)
Q Consensus 255 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~ 333 (518)
+...+..+|+.... .+.+++||+ +.+...+.... ....-.+.+.. ++.||+..... ..+++||+
T Consensus 152 ~~d~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~~~~---~~~~~~~i~~d~~g~l~v~~~~~-----~~i~~~~~- 216 (300)
T 2qc5_A 152 TLGSDNALWFTENQ-----NNSIGRITN-TGKLEEYPLPT---NAAAPVGITSGNDGALWFVEIMG-----NKIGRITT- 216 (300)
T ss_dssp EECTTSSEEEEETT-----TTEEEEECT-TCCEEEEECSS---TTCCEEEEEECTTSSEEEEETTT-----TEEEEECT-
T ss_pred EECCCCCEEEEecC-----CCeEEEECC-CCcEEEeeCCC---CCCCcceEEECCCCCEEEEccCC-----CEEEEEcC-
Confidence 34333337776432 236999998 66666553211 11111233332 56888865322 35899998
Q ss_pred CCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcc
Q 010115 334 KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIE 387 (518)
Q Consensus 334 ~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~ 387 (518)
+.++..... +. .......+.+.. ++.||+.... .+.+.+||+.
T Consensus 217 ~g~~~~~~~-~~----~~~~~~~i~~d~--~g~l~v~~~~----~~~i~~~~~~ 259 (300)
T 2qc5_A 217 TGEISEYDI-PT----PNARPHAITAGK--NSEIWFTEWG----ANQIGRITND 259 (300)
T ss_dssp TCCEEEEEC-SS----TTCCEEEEEECS--TTCEEEEETT----TTEEEEECTT
T ss_pred CCcEEEEEC-CC----CCCCceEEEECC--CCCEEEeccC----CCeEEEECCC
Confidence 566665432 11 111122333332 3447765422 2367788773
No 82
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=96.01 E-value=1.2 Score=42.97 Aligned_cols=234 Identities=11% Similarity=0.053 Sum_probs=113.8
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEE-ECCEEEEEcCcCCCCCCceeEE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSGSDRVSVW 176 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~ 176 (518)
++.+++.|+.+ ..+.++|..+..-...-. .....-.+++. -++..++.||.+. .+.
T Consensus 66 d~~~l~s~s~D-----g~v~iWd~~~~~~~~~~~------------~~~~~v~~~~~s~~~~~l~s~~~d~------~v~ 122 (340)
T 1got_B 66 DSRLLLSASQD-----GKLIIWDSYTTNKVHAIP------------LRSSWVMTCAYAPSGNYVACGGLDN------ICS 122 (340)
T ss_dssp TSSEEEEEETT-----TEEEEEETTTCCEEEEEE------------CSSSCEEEEEECTTSSEEEEEETTC------EEE
T ss_pred CCCEEEEEeCC-----CcEEEEECCCCCcceEee------------cCCccEEEEEECCCCCEEEEEeCCC------eEE
Confidence 45566667654 357888877654322211 00111112222 2466777777643 577
Q ss_pred EEECCCCc--EEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEE
Q 010115 177 TFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (518)
Q Consensus 177 ~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~ 254 (518)
.||+.+.. ........ ............-++. ++.|+.+ ..+.+||+.+.+-...- ... ...-.++
T Consensus 123 iw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~-l~s~s~d------~~i~~wd~~~~~~~~~~---~~h-~~~v~~~ 190 (340)
T 1got_B 123 IYNLKTREGNVRVSRELA-GHTGYLSCCRFLDDNQ-IVTSSGD------TTCALWDIETGQQTTTF---TGH-TGDVMSL 190 (340)
T ss_dssp EEETTTCSBSCEEEEEEE-CCSSCEEEEEEEETTE-EEEEETT------SCEEEEETTTTEEEEEE---CCC-SSCEEEE
T ss_pred EEECccCCCcceeEEEec-CCCccEEEEEECCCCc-EEEEECC------CcEEEEECCCCcEEEEE---cCC-CCceEEE
Confidence 88877653 22111100 0111111111223455 4555543 34888999877654332 111 1112233
Q ss_pred EEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCCCcCeEEEEECC
Q 010115 255 ALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDIL 333 (518)
Q Consensus 255 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~ 333 (518)
+...+..+++.|+.++ .+..||+.+..-...-.. ....-.+++.. ++++++.|+.++. +.+||+.
T Consensus 191 ~~~~~~~~l~sg~~d~-----~v~~wd~~~~~~~~~~~~----h~~~v~~v~~~p~~~~l~s~s~d~~-----v~iwd~~ 256 (340)
T 1got_B 191 SLAPDTRLFVSGACDA-----SAKLWDVREGMCRQTFTG----HESDINAICFFPNGNAFATGSDDAT-----CRLFDLR 256 (340)
T ss_dssp EECTTSSEEEEEETTS-----CEEEEETTTCSEEEEECC----CSSCEEEEEECTTSSEEEEEETTSC-----EEEEETT
T ss_pred EECCCCCEEEEEeCCC-----cEEEEECCCCeeEEEEcC----CcCCEEEEEEcCCCCEEEEEcCCCc-----EEEEECC
Confidence 3444433777777654 488899877643222111 11111222222 5677888876544 8899988
Q ss_pred CCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 334 KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 334 ~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
+..-...... .....+...+.+.. .+.+++.|+.++ .+.+||..+.+
T Consensus 257 ~~~~~~~~~~----~~~~~~v~~~~~s~--~g~~l~~g~~d~----~i~vwd~~~~~ 303 (340)
T 1got_B 257 ADQELMTYSH----DNIICGITSVSFSK--SGRLLLAGYDDF----NCNVWDALKAD 303 (340)
T ss_dssp TTEEEEEECC----TTCCSCEEEEEECT--TSSEEEEEETTS----EEEEEETTTCC
T ss_pred CCcEEEEEcc----CCcccceEEEEECC--CCCEEEEECCCC----eEEEEEcccCc
Confidence 7653322111 11112233444432 344667777653 58888876543
No 83
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=95.97 E-value=1 Score=41.94 Aligned_cols=237 Identities=9% Similarity=0.030 Sum_probs=120.1
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCceeE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSV 175 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v 175 (518)
++.+|+..... ..+.+||+....-..+..... .......-+.++.. ++.+|+.+... ...+
T Consensus 40 ~g~l~v~~~~~-----~~i~~~d~~g~~~~~~~~~~~-------~~~~~~~p~~i~~~~~~g~l~v~~~~~-----~~~i 102 (286)
T 1q7f_A 40 QNDIIVADTNN-----HRIQIFDKEGRFKFQFGECGK-------RDSQLLYPNRVAVVRNSGDIIVTERSP-----THQI 102 (286)
T ss_dssp TCCEEEEEGGG-----TEEEEECTTSCEEEEECCBSS-------STTCBSSEEEEEEETTTTEEEEEECGG-----GCEE
T ss_pred CCCEEEEECCC-----CEEEEECCCCcEEEEecccCC-------CcccccCceEEEEEcCCCeEEEEcCCC-----CCEE
Confidence 45688775422 458889887554333332100 00001122344442 68899886421 1368
Q ss_pred EEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEE
Q 010115 176 WTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (518)
Q Consensus 176 ~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~ 254 (518)
.+||.....-..+.. +....-+.+++. ++.+|+.... ...+.+||+.......+...+.... -..+
T Consensus 103 ~~~d~~g~~~~~~~~----~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~g~~~~~~~~~~~~~~---p~~i 169 (286)
T 1q7f_A 103 QIYNQYGQFVRKFGA----TILQHPRGVTVDNKGRIIVVECK------VMRVIIFDQNGNVLHKFGCSKHLEF---PNGV 169 (286)
T ss_dssp EEECTTSCEEEEECT----TTCSCEEEEEECTTSCEEEEETT------TTEEEEECTTSCEEEEEECTTTCSS---EEEE
T ss_pred EEECCCCcEEEEecC----ccCCCceEEEEeCCCCEEEEECC------CCEEEEEcCCCCEEEEeCCCCccCC---cEEE
Confidence 899965544333321 111122344443 5678887432 2458899986655544432111111 1234
Q ss_pred EEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCCCcCeEEEEECC
Q 010115 255 ALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDIL 333 (518)
Q Consensus 255 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~ 333 (518)
++..+..+|+.... .+.|.+||++......+...+... .-.+++.. ++++|+...... ..+.+||++
T Consensus 170 ~~~~~g~l~v~~~~-----~~~i~~~~~~g~~~~~~~~~g~~~---~p~~i~~d~~G~l~v~~~~~~----~~i~~~~~~ 237 (286)
T 1q7f_A 170 VVNDKQEIFISDNR-----AHCVKVFNYEGQYLRQIGGEGITN---YPIGVGINSNGEILIADNHNN----FNLTIFTQD 237 (286)
T ss_dssp EECSSSEEEEEEGG-----GTEEEEEETTCCEEEEESCTTTSC---SEEEEEECTTCCEEEEECSSS----CEEEEECTT
T ss_pred EECCCCCEEEEECC-----CCEEEEEcCCCCEEEEEccCCccC---CCcEEEECCCCCEEEEeCCCC----EEEEEECCC
Confidence 44444458886533 246999998776555553322111 11233332 678888864332 158999987
Q ss_pred CCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEccc
Q 010115 334 KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (518)
Q Consensus 334 ~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~ 388 (518)
...-..+.... .......+++.. ++.||+.. .+ +.|.+|+...
T Consensus 238 g~~~~~~~~~~-----~~~~~~~i~~~~--~g~l~vs~-~~----~~v~v~~~~~ 280 (286)
T 1q7f_A 238 GQLISALESKV-----KHAQCFDVALMD--DGSVVLAS-KD----YRLYIYRYVQ 280 (286)
T ss_dssp SCEEEEEEESS-----CCSCEEEEEEET--TTEEEEEE-TT----TEEEEEECSC
T ss_pred CCEEEEEcccC-----CCCcceeEEECC--CCcEEEEC-CC----CeEEEEEccc
Confidence 65544443211 111122334432 35688774 22 4788887644
No 84
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=95.92 E-value=0.2 Score=49.00 Aligned_cols=151 Identities=11% Similarity=0.116 Sum_probs=71.0
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCceeEE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~ 176 (518)
++++++.|+.+ ..+.+||..+..|..+... ......-.+++.. ++.+++.|+.+. .+.
T Consensus 22 ~g~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~----------~~h~~~v~~~~~s~~~~~l~s~s~d~------~v~ 80 (377)
T 3dwl_C 22 QRTEFVTTTAT-----NQVELYEQDGNGWKHARTF----------SDHDKIVTCVDWAPKSNRIVTCSQDR------NAY 80 (377)
T ss_dssp SSSEEECCCSS-----SCBCEEEEETTEEEECCCB----------CCCSSCEEEEEECTTTCCEEEEETTS------SEE
T ss_pred CCCEEEEecCC-----CEEEEEEccCCceEEEEEE----------ecCCceEEEEEEeCCCCEEEEEeCCC------eEE
Confidence 45566777654 4578899988888776652 1111111222222 456777777543 478
Q ss_pred EEECCCCc-EEEeeecCCCCCC-CcceEEEEE-CCEEEEEcccCCCCcccCcEEEEEcCCCc-EEEeecCCCCCCCCCCc
Q 010115 177 TFDTETEC-WSVVEAKGDIPVA-RSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLT-WLPLHCTGTGPSPRSNH 252 (518)
Q Consensus 177 ~yd~~t~~-W~~~~~~~~~p~~-r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~g~~p~~r~~~ 252 (518)
.||..+.. |..... +... ..-.++... ++.+++.|+.+. .+.+||+.+.+ |..+... ..+....-.
T Consensus 81 vwd~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~-~~~h~~~v~ 150 (377)
T 3dwl_C 81 VYEKRPDGTWKQTLV---LLRLNRAATFVRWSPNEDKFAVGSGAR------VISVCYFEQENDWWVSKHL-KRPLRSTIL 150 (377)
T ss_dssp EC------CCCCEEE---CCCCSSCEEEEECCTTSSCCEEEESSS------CEEECCC-----CCCCEEE-CSSCCSCEE
T ss_pred EEEcCCCCceeeeeE---ecccCCceEEEEECCCCCEEEEEecCC------eEEEEEECCcccceeeeEe-ecccCCCeE
Confidence 88888776 544432 1111 111222222 456677776543 36777776654 3222210 111122222
Q ss_pred EEEEECCcEEEEEcCCCCCCCCCcEEEEEcCC
Q 010115 253 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFET 284 (518)
Q Consensus 253 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~ 284 (518)
+++...+..+++.|+.++ .+..||+.+
T Consensus 151 ~~~~~~~~~~l~~~~~d~-----~i~iwd~~~ 177 (377)
T 3dwl_C 151 SLDWHPNNVLLAAGCADR-----KAYVLSAYV 177 (377)
T ss_dssp EEEECTTSSEEEEEESSS-----CEEEEEECC
T ss_pred EEEEcCCCCEEEEEeCCC-----EEEEEEEEe
Confidence 334444433677776653 488888754
No 85
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=95.91 E-value=1.5 Score=43.25 Aligned_cols=105 Identities=10% Similarity=-0.010 Sum_probs=56.1
Q ss_pred CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcE-EEEEcCCCCCCCCCcEEEEEcCCC
Q 010115 207 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKN-LLIFGGSSKSKTLNDLYSLDFETM 285 (518)
Q Consensus 207 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~-lyv~GG~~~~~~~~~v~~yd~~~~ 285 (518)
++.+++.|+.++ .+.+||+.+.+-.... .......-.+++...+.. +++.|+.++ .+..||+.+.
T Consensus 258 ~~~~l~~~~~dg------~i~i~d~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~~g~~dg-----~i~vwd~~~~ 323 (420)
T 3vl1_A 258 YGKYVIAGHVSG------VITVHNVFSKEQTIQL---PSKFTCSCNSLTVDGNNANYIYAGYENG-----MLAQWDLRSP 323 (420)
T ss_dssp TTEEEEEEETTS------CEEEEETTTCCEEEEE---CCTTSSCEEEEEECSSCTTEEEEEETTS-----EEEEEETTCT
T ss_pred CCCEEEEEcCCC------eEEEEECCCCceeEEc---ccccCCCceeEEEeCCCCCEEEEEeCCC-----eEEEEEcCCC
Confidence 456777776543 3889999876543322 111111222333443332 566666543 5899998765
Q ss_pred e--EEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCCCcCeEEEEECCC
Q 010115 286 I--WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILK 334 (518)
Q Consensus 286 ~--W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~ 334 (518)
. -..+... ....-.++...++++++.|+.++ .+.+||+..
T Consensus 324 ~~~~~~~~~~----~~~~v~~~~~~~~~~l~s~~~d~-----~v~iw~~~~ 365 (420)
T 3vl1_A 324 ECPVGEFLIN----EGTPINNVYFAAGALFVSSGFDT-----SIKLDIISD 365 (420)
T ss_dssp TSCSEEEEES----TTSCEEEEEEETTEEEEEETTTE-----EEEEEEECC
T ss_pred cCchhhhhcc----CCCCceEEEeCCCCEEEEecCCc-----cEEEEeccC
Confidence 3 2333221 11112233344788888887553 377777654
No 86
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=95.90 E-value=0.91 Score=43.73 Aligned_cols=235 Identities=11% Similarity=0.090 Sum_probs=109.2
Q ss_pred cEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEE-ECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCC
Q 010115 115 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 193 (518)
Q Consensus 115 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~ 193 (518)
.+|.+|..+.+++.+..... . . .-..++. -+++||+.+... ....++.||+.+.+++.+....
T Consensus 19 ~v~~~d~~tg~~~~~~~~~~-------~---~-~p~~~a~spdg~l~~~~~~~----~~~~v~~~~~~~g~~~~~~~~~- 82 (347)
T 3hfq_A 19 YQGTLDTTAKTLTNDGLLAA-------T---Q-NPTYLALSAKDCLYSVDKED----DEGGIAAWQIDGQTAHKLNTVV- 82 (347)
T ss_dssp EEEEEETTTTEEEEEEEEEE-------C---S-CCCCEEECTTCEEEEEEEET----TEEEEEEEEEETTEEEEEEEEE-
T ss_pred EEEEEcCCCCeEEEeeeeec-------c---C-CcceEEEccCCeEEEEEecC----CCceEEEEEecCCcEEEeeeee-
Confidence 46677777787776543110 0 0 1112222 256777765431 1246899999888877655310
Q ss_pred CCCCCcceEEEEE-C-CEEEEEcccCCCCcccCcEEEEEcC-CCcEEEee---cCCCCCCCC----CCcEEEEECCcEEE
Q 010115 194 IPVARSGHTVVRA-S-SVLILFGGEDGKRRKLNDLHMFDLK-SLTWLPLH---CTGTGPSPR----SNHVAALYDDKNLL 263 (518)
Q Consensus 194 ~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~yd~~-t~~W~~~~---~~g~~p~~r----~~~~~~~~~~~~ly 263 (518)
.....-..++.. + ..||+.+..+ ..+.+||+. +.+.+.+. ..+..|.+| .-+.++...+..+|
T Consensus 83 -~~~~~p~~~a~spdg~~l~~~~~~~------~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~ 155 (347)
T 3hfq_A 83 -APGTPPAYVAVDEARQLVYSANYHK------GTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLA 155 (347)
T ss_dssp -EESCCCSEEEEETTTTEEEEEETTT------TEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEE
T ss_pred -cCCCCCEEEEECCCCCEEEEEeCCC------CEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEE
Confidence 001111223332 3 4566654221 347778874 33443332 122222222 12234444333377
Q ss_pred EEcCCCCCCCCCcEEEEEcC-CCeEEEeecCCCCCCCCcceEEEEE-CC-EEEEEcccCCCCCcCeEEEEE--CCCCceE
Q 010115 264 IFGGSSKSKTLNDLYSLDFE-TMIWTRIKIRGFHPSPRAGCCGVLC-GT-KWYIAGGGSRKKRHAETLIFD--ILKGEWS 338 (518)
Q Consensus 264 v~GG~~~~~~~~~v~~yd~~-~~~W~~v~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd--~~~~~W~ 338 (518)
+.+..+ +.++.||+. +.+...+......+..... .++.. ++ .+|+.+... +.+.+|+ ..+.+++
T Consensus 156 v~~~~~-----~~v~~~~~~~~g~~~~~~~~~~~~g~~p~-~~~~spdg~~l~v~~~~~-----~~v~v~~~~~~~g~~~ 224 (347)
T 3hfq_A 156 VIDLGS-----DKVYVYNVSDAGQLSEQSVLTMEAGFGPR-HLVFSPDGQYAFLAGELS-----SQIASLKYDTQTGAFT 224 (347)
T ss_dssp EEETTT-----TEEEEEEECTTSCEEEEEEEECCTTCCEE-EEEECTTSSEEEEEETTT-----TEEEEEEEETTTTEEE
T ss_pred EEeCCC-----CEEEEEEECCCCcEEEeeeEEcCCCCCCc-eEEECCCCCEEEEEeCCC-----CEEEEEEecCCCCceE
Confidence 765332 368899987 5655544321111111111 22222 44 477765433 2355555 4457765
Q ss_pred EeecCCCCCC--CCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEccc
Q 010115 339 VAITSPSSSV--TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (518)
Q Consensus 339 ~~~~~~~~~~--~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~ 388 (518)
.+........ ........+.+. ++..+||+.+..+ +.+.+|++..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~i~~s-pdG~~l~v~~~~~----~~v~v~~~~~ 271 (347)
T 3hfq_A 225 QLGIVKTIPADYTAHNGAAAIRLS-HDGHFLYVSNRGY----NTLAVFAVTA 271 (347)
T ss_dssp EEEEEESSCTTCCSCCEEEEEEEC-TTSCEEEEEEETT----TEEEEEEECG
T ss_pred EeeeeeecCCCCCCCCcceeEEEC-CCCCEEEEEeCCC----CEEEEEEECC
Confidence 5432111100 111223334444 3335677665432 3688888763
No 87
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=95.90 E-value=1.1 Score=43.73 Aligned_cols=116 Identities=14% Similarity=0.045 Sum_probs=56.8
Q ss_pred CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCC--C--CCCCCcEEEEE-CCcEEEEEcCCCCCCCCCcEEEEE
Q 010115 207 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTG--P--SPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLD 281 (518)
Q Consensus 207 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~--p--~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd 281 (518)
++ +++.|+.+ ..+.+||+.+.+-...-. .. . ....-.+++.. ++. +++.|+.++ ....+..||
T Consensus 197 ~~-~l~~~~~d------g~i~i~d~~~~~~~~~~~--~~~~h~~~~~~i~~i~~~~~~~-~l~~~~~d~--~~g~i~i~d 264 (397)
T 1sq9_A 197 RG-LIATGFNN------GTVQISELSTLRPLYNFE--SQHSMINNSNSIRSVKFSPQGS-LLAIAHDSN--SFGCITLYE 264 (397)
T ss_dssp TS-EEEEECTT------SEEEEEETTTTEEEEEEE--CCC---CCCCCEEEEEECSSTT-EEEEEEEET--TEEEEEEEE
T ss_pred Cc-eEEEEeCC------CcEEEEECCCCceeEEEe--ccccccccCCccceEEECCCCC-EEEEEecCC--CCceEEEEE
Confidence 45 66666644 348899998765443321 10 1 01112233333 345 666666431 013589999
Q ss_pred cCCCeEEEeecCCCCCC--------CCcceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCCCceEE
Q 010115 282 FETMIWTRIKIRGFHPS--------PRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSV 339 (518)
Q Consensus 282 ~~~~~W~~v~~~~~~p~--------~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 339 (518)
+.+.+-...-.....+. .......+.+ ++++++.|+.++ .+.+||+.+.+-..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~ 327 (397)
T 1sq9_A 265 TEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG-----KLRFWDVKTKERIT 327 (397)
T ss_dssp TTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS-----EEEEEETTTTEEEE
T ss_pred CCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCC-----eEEEEEcCCCceeE
Confidence 87654222211100000 1111122233 567777777543 48999998765433
No 88
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=95.87 E-value=1.8 Score=46.59 Aligned_cols=125 Identities=14% Similarity=0.087 Sum_probs=69.4
Q ss_pred EEEECCEEEEEcCcCCCCCCceeEEEEECCCCc--EEEeeecCC--CCC---CCcceEEEEECCEEEEEcccCCCCcccC
Q 010115 152 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGD--IPV---ARSGHTVVRASSVLILFGGEDGKRRKLN 224 (518)
Q Consensus 152 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~--~p~---~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 224 (518)
-++.++.||+.... ..|+.+|..|++ |+.-..... .+. .....+.++.+++||+... -.
T Consensus 73 P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~-------dg 138 (677)
T 1kb0_A 73 PVVVDGIMYVSASW-------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-------DG 138 (677)
T ss_dssp CEEETTEEEEECGG-------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-------TS
T ss_pred CEEECCEEEEECCC-------CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC-------CC
Confidence 35679999998653 358999999876 886543110 000 0122345667889888632 24
Q ss_pred cEEEEEcCCCc--EEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCe--EEEee
Q 010115 225 DLHMFDLKSLT--WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIK 291 (518)
Q Consensus 225 ~~~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~v~ 291 (518)
.++.+|.++.+ |+.-.............+.++.++. +|+..+......-..|+.||.++.+ |+.-.
T Consensus 139 ~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~-v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 208 (677)
T 1kb0_A 139 RLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGK-VIIGNGGAEYGVRGYITAYDAETGERKWRWFS 208 (677)
T ss_dssp EEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred EEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCE-EEEEecccccCCCCEEEEEECCCCcEEEEecc
Confidence 58999998764 8765310000001112223344554 5553322212234579999997654 87654
No 89
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=95.84 E-value=0.44 Score=44.05 Aligned_cols=202 Identities=11% Similarity=0.046 Sum_probs=102.4
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCC-CcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCCCceeEE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDR-FSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVW 176 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~-~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~ 176 (518)
+++.+++++ . ..++++|+.+ .....+... ............-+++.+++++.... ....+|
T Consensus 52 dg~~l~~~~-~-----~~i~~~d~~~~~~~~~~~~~----------~~~~~~~~~~~spdg~~l~~~~~~~~--~~~~l~ 113 (297)
T 2ojh_A 52 DGKYLLLNS-E-----GLLYRLSLAGDPSPEKVDTG----------FATICNNDHGISPDGALYAISDKVEF--GKSAIY 113 (297)
T ss_dssp TSSEEEEEE-T-----TEEEEEESSSCCSCEECCCT----------TCCCBCSCCEECTTSSEEEEEECTTT--SSCEEE
T ss_pred CCCEEEEEc-C-----CeEEEEeCCCCCCceEeccc----------cccccccceEECCCCCEEEEEEeCCC--CcceEE
Confidence 455555554 1 3689999988 766655431 11111111222224555555543221 234799
Q ss_pred EEECCCCcEEEeeecCCCCCCCcceEEEEE-C-CEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEE
Q 010115 177 TFDTETECWSVVEAKGDIPVARSGHTVVRA-S-SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (518)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~ 254 (518)
.++..+.+...+.. ... ...+... + ..|++.++.+.. ..+|.+|..+.....+. ..+ .. ...+
T Consensus 114 ~~~~~~~~~~~~~~----~~~--~~~~~~spdg~~l~~~~~~~~~----~~l~~~~~~~~~~~~~~---~~~-~~-~~~~ 178 (297)
T 2ojh_A 114 LLPSTGGTPRLMTK----NLP--SYWHGWSPDGKSFTYCGIRDQV----FDIYSMDIDSGVETRLT---HGE-GR-NDGP 178 (297)
T ss_dssp EEETTCCCCEECCS----SSS--EEEEEECTTSSEEEEEEEETTE----EEEEEEETTTCCEEECC---CSS-SC-EEEE
T ss_pred EEECCCCceEEeec----CCC--ccceEECCCCCEEEEEECCCCc----eEEEEEECCCCcceEcc---cCC-Cc-cccc
Confidence 99998877555442 111 2222332 3 345555544322 36888888877776654 111 11 1223
Q ss_pred EEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEcccCCCC------CcC
Q 010115 255 ALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKK------RHA 325 (518)
Q Consensus 255 ~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~------~~~ 325 (518)
+.. +++.|++.+..++ ...+|.+++.+.....+... . .....+.+ +++.+++++..... ...
T Consensus 179 ~~s~dg~~l~~~~~~~~---~~~i~~~~~~~~~~~~~~~~---~---~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 249 (297)
T 2ojh_A 179 DYSPDGRWIYFNSSRTG---QMQIWRVRVDGSSVERITDS---A---YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDV 249 (297)
T ss_dssp EECTTSSEEEEEECTTS---SCEEEEEETTSSCEEECCCC---S---EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEE
T ss_pred eECCCCCEEEEEecCCC---CccEEEECCCCCCcEEEecC---C---cccCCeEECCCCCEEEEEEcCCCCCcccccCce
Confidence 333 4453444443232 35688888877776665432 1 11222223 45544444433211 225
Q ss_pred eEEEEECCCCceEEee
Q 010115 326 ETLIFDILKGEWSVAI 341 (518)
Q Consensus 326 ~v~~yd~~~~~W~~~~ 341 (518)
.++++|+.+.+...+.
T Consensus 250 ~l~~~d~~~~~~~~~~ 265 (297)
T 2ojh_A 250 RVQLMDMDGGNVETLF 265 (297)
T ss_dssp EEEEEETTSCSCEEEE
T ss_pred EEEEEecCCCCceeee
Confidence 6899999988776654
No 90
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=95.76 E-value=1.8 Score=45.59 Aligned_cols=128 Identities=18% Similarity=0.205 Sum_probs=72.7
Q ss_pred eEEEEECCEEEEEcCcCCCCCCCcEEEEEc-CCC--cEEEcccccccCCCCCCCCCCC--ccceEEEEECCEEEEEcCcC
Q 010115 92 HAAAVIGNKMIVVGGESGNGLLDDVQVLNF-DRF--SWTAASSKLYLSPSSLPLKIPA--CRGHSLISWGKKVLLVGGKT 166 (518)
Q Consensus 92 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~-~~~--~W~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~iyv~GG~~ 166 (518)
.+-++.++.||+.... ...++.+|. .+. .|+.-....... .+... ....+.++.+++||+....
T Consensus 56 ~~P~v~~g~vyv~~~~-----~~~v~AlD~~~tG~~~W~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~v~~~d- 124 (571)
T 2ad6_A 56 GAPLVIGDMMYVHSAF-----PNNTYALNLNDPGKIVWQHKPKQDAST-----KAVMCCDVVDRGLAYGAGQIVKKQAN- 124 (571)
T ss_dssp SCCEEETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGGG-----GGGCTTCSCCCCCEEETTEEEEECTT-
T ss_pred cccEEECCEEEEEeCC-----CCEEEEEeCCCCccEEEEEcCCCCccc-----cccccccccccccEEECCEEEEEeCC-
Confidence 4446679999998753 246899998 664 698754311000 00000 0122345678999987432
Q ss_pred CCCCCceeEEEEECCCCc--EEEeeecCCCCCC-CcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCC--cEEEe
Q 010115 167 DSGSDRVSVWTFDTETEC--WSVVEAKGDIPVA-RSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL--TWLPL 239 (518)
Q Consensus 167 ~~~~~~~~v~~yd~~t~~--W~~~~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~ 239 (518)
..++.+|.++++ |+.-.. ..+.. ....+-++.++.+|+-.+.... ..-..++.||.++. .|+.-
T Consensus 125 ------g~l~alD~~tG~~~W~~~~~--~~~~~~~~~~~P~v~~g~v~vg~~~~~~-~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 125 ------GHLLALDAKTGKINWEVEVC--DPKVGSTLTQAPFVAKDTVLMGCSGAEL-GVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp ------SEEEEEETTTCCEEEEEECC--CGGGTCBCCSCCEEETTEEEEECBCGGG-TCCCEEEEEETTTCCEEEEEE
T ss_pred ------CEEEEEECCCCCEEEEecCC--CCCccceeccCCEEECCEEEEEecCCcc-CCCCEEEEEECCCCcEEEEEc
Confidence 269999998875 876432 11100 1122334568888875432111 11356899999875 48764
No 91
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=95.72 E-value=0.74 Score=43.87 Aligned_cols=237 Identities=8% Similarity=0.009 Sum_probs=115.2
Q ss_pred CEEEEEcCcCCCCCCCcEEEEEcCCCcE--EEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcee
Q 010115 99 NKMIVVGGESGNGLLDDVQVLNFDRFSW--TAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVS 174 (518)
Q Consensus 99 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W--~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 174 (518)
+.+|+.+... +.++++|+.+.+- ..+... ..+ .++++.. ++.+| .+.... ....
T Consensus 52 ~~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~~~-----------~~~--~~~~~~s~dg~~l~-~~~~~~---~~~~ 109 (331)
T 3u4y_A 52 SNVVVTSDFC-----QTLVQIETQLEPPKVVAIQEG-----------QSS--MADVDITPDDQFAV-TVTGLN---HPFN 109 (331)
T ss_dssp CEEEEEESTT-----CEEEEEECSSSSCEEEEEEEC-----------SSC--CCCEEECTTSSEEE-ECCCSS---SSCE
T ss_pred CEEEEEeCCC-----CeEEEEECCCCceeEEecccC-----------CCC--ccceEECCCCCEEE-EecCCC---Cccc
Confidence 4577766533 3789999988764 222220 111 1212222 45666 332211 1126
Q ss_pred EEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CC-EEEEEcccCCCCcccCc-EEEEEcCCCc-EEEeecCCCCCCCCC
Q 010115 175 VWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SS-VLILFGGEDGKRRKLND-LHMFDLKSLT-WLPLHCTGTGPSPRS 250 (518)
Q Consensus 175 v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~-~~~yd~~t~~-W~~~~~~g~~p~~r~ 250 (518)
++.||+.+.+.......+ ..-+.++.. ++ .+|+.+..+ +. +.+|++.... ...... ...+....
T Consensus 110 i~v~d~~~~~~~~~~~~~-----~~~~~~~~spdg~~l~~~~~~~------~~~i~~~~~~~~g~~~~~~~-~~~~~~~~ 177 (331)
T 3u4y_A 110 MQSYSFLKNKFISTIPIP-----YDAVGIAISPNGNGLILIDRSS------ANTVRRFKIDADGVLFDTGQ-EFISGGTR 177 (331)
T ss_dssp EEEEETTTTEEEEEEECC-----TTEEEEEECTTSSCEEEEEETT------TTEEEEEEECTTCCEEEEEE-EEECSSSS
T ss_pred EEEEECCCCCeEEEEECC-----CCccceEECCCCCEEEEEecCC------CceEEEEEECCCCcEeecCC-ccccCCCC
Confidence 999999988765543311 122444443 33 577765432 34 6677765422 111100 01111111
Q ss_pred CcEEEEEC-CcEEEEEcCCCCCCCCCcEEEEEcCCCeE----EEeecCCCCCCCCcceEEEEE-CC-EEEEEcccCCCCC
Q 010115 251 NHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIW----TRIKIRGFHPSPRAGCCGVLC-GT-KWYIAGGGSRKKR 323 (518)
Q Consensus 251 ~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W----~~v~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~ 323 (518)
-..++... ++.+|+.+.. .+.+.+||+++.+. ..+.. + .....++.. ++ .+|+....
T Consensus 178 ~~~~~~spdg~~l~v~~~~-----~~~v~v~d~~~~~~~~~~~~~~~-~-----~~~~~~~~spdg~~l~v~~~~----- 241 (331)
T 3u4y_A 178 PFNITFTPDGNFAFVANLI-----GNSIGILETQNPENITLLNAVGT-N-----NLPGTIVVSRDGSTVYVLTES----- 241 (331)
T ss_dssp EEEEEECTTSSEEEEEETT-----TTEEEEEECSSTTSCEEEEEEEC-S-----SCCCCEEECTTSSEEEEECSS-----
T ss_pred ccceEECCCCCEEEEEeCC-----CCeEEEEECCCCcccceeeeccC-C-----CCCceEEECCCCCEEEEEEcC-----
Confidence 23344443 4456776533 24699999987664 22221 1 111223332 44 47776542
Q ss_pred cCeEEEEECCCCceEEeecCCCC---CCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 324 HAETLIFDILKGEWSVAITSPSS---SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 324 ~~~v~~yd~~~~~W~~~~~~~~~---~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
.+.++++|+.+.+.+.+...+.. .+..........+. .+...||+.+..+ +.+.+||+.+..
T Consensus 242 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-pdg~~l~v~~~~~----~~v~v~d~~~~~ 306 (331)
T 3u4y_A 242 TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALN-KTETKLFISANIS----RELKVFTISGKV 306 (331)
T ss_dssp EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEEC-TTSSEEEEEETTT----TEEEEEETTSCE
T ss_pred CCEEEEEECCCCceeeecccccccccCCCCcccccceEEC-CCCCEEEEecCCC----CcEEEEEecCCc
Confidence 24589999999887555432211 01111111223333 2345676655432 368999987654
No 92
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=95.72 E-value=0.3 Score=49.12 Aligned_cols=200 Identities=9% Similarity=-0.014 Sum_probs=105.6
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--C-CEEEEEcCcCCCCCCcee
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--G-KKVLLVGGKTDSGSDRVS 174 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~ 174 (518)
+++.+++++.+. ....++++|+.+.+...+... +. ....+.+ + ..|++.+.... ...
T Consensus 189 dg~~la~~s~~~--~~~~i~~~d~~tg~~~~l~~~------------~~--~~~~~~~spdg~~la~~~~~~g----~~~ 248 (415)
T 2hqs_A 189 DGSKLAYVTFES--GRSALVIQTLANGAVRQVASF------------PR--HNGAPAFSPDGSKLAFALSKTG----SLN 248 (415)
T ss_dssp TSSEEEEEECTT--SSCEEEEEETTTCCEEEEECC------------SS--CEEEEEECTTSSEEEEEECTTS----SCE
T ss_pred CCCEEEEEEecC--CCcEEEEEECCCCcEEEeecC------------CC--cccCEEEcCCCCEEEEEEecCC----Cce
Confidence 344444444332 125789999988877655431 11 1222222 3 45665554322 236
Q ss_pred EEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcE
Q 010115 175 VWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV 253 (518)
Q Consensus 175 v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~ 253 (518)
++.+|+.+.+...+.. .+ ......+. -+++.+++++.... ...++.+|+.+.+-..+.. . ......
T Consensus 249 i~~~d~~~~~~~~l~~---~~--~~~~~~~~spdg~~l~~~s~~~g---~~~i~~~d~~~~~~~~l~~----~-~~~~~~ 315 (415)
T 2hqs_A 249 LYVMDLASGQIRQVTD---GR--SNNTEPTWFPDSQNLAFTSDQAG---RPQVYKVNINGGAPQRITW----E-GSQNQD 315 (415)
T ss_dssp EEEEETTTCCEEECCC---CS--SCEEEEEECTTSSEEEEEECTTS---SCEEEEEETTSSCCEECCC----S-SSEEEE
T ss_pred EEEEECCCCCEEeCcC---CC--CcccceEECCCCCEEEEEECCCC---CcEEEEEECCCCCEEEEec----C-CCcccC
Confidence 9999999988765542 11 11122222 24554444443221 2469999998877555431 1 112222
Q ss_pred EEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCCCcCeEEEEE
Q 010115 254 AALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFD 331 (518)
Q Consensus 254 ~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd 331 (518)
.+.. +++ .+++++.... ...++.+|+++.+...+... . ...+.+.. +++.+++++.... ...++.+|
T Consensus 316 ~~~spdG~-~l~~~~~~~g--~~~i~~~d~~~~~~~~l~~~---~---~~~~~~~spdg~~l~~~s~~~~--~~~l~~~d 384 (415)
T 2hqs_A 316 ADVSSDGK-FMVMVSSNGG--QQHIAKQDLATGGVQVLSST---F---LDETPSLAPNGTMVIYSSSQGM--GSVLNLVS 384 (415)
T ss_dssp EEECTTSS-EEEEEEECSS--CEEEEEEETTTCCEEECCCS---S---SCEEEEECTTSSEEEEEEEETT--EEEEEEEE
T ss_pred eEECCCCC-EEEEEECcCC--ceEEEEEECCCCCEEEecCC---C---CcCCeEEcCCCCEEEEEEcCCC--ccEEEEEE
Confidence 3333 445 4445443221 34799999999887665432 1 11222222 5666666654332 24689999
Q ss_pred CCCCceEEee
Q 010115 332 ILKGEWSVAI 341 (518)
Q Consensus 332 ~~~~~W~~~~ 341 (518)
+.+.....+.
T Consensus 385 ~~g~~~~~l~ 394 (415)
T 2hqs_A 385 TDGRFKARLP 394 (415)
T ss_dssp TTSCCEEECC
T ss_pred CCCCcEEEee
Confidence 9888777764
No 93
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=95.68 E-value=1.3 Score=42.54 Aligned_cols=105 Identities=13% Similarity=0.125 Sum_probs=55.2
Q ss_pred CEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCceeEE
Q 010115 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVW 176 (518)
Q Consensus 99 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~ 176 (518)
+.+++.|+.+ ..+.+||+.+.+-...-. .....-.+++.. ++.+++.|+.+. .+.
T Consensus 85 ~~~l~~~~~d-----g~i~v~d~~~~~~~~~~~------------~~~~~i~~~~~~~~~~~~l~s~~~dg------~i~ 141 (366)
T 3k26_A 85 HPLLAVAGSR-----GIIRIINPITMQCIKHYV------------GHGNAINELKFHPRDPNLLLSVSKDH------ALR 141 (366)
T ss_dssp CEEEEEEETT-----CEEEEECTTTCCEEEEEE------------SCCSCEEEEEECSSCTTEEEEEETTS------CEE
T ss_pred CCEEEEecCC-----CEEEEEEchhceEeeeec------------CCCCcEEEEEECCCCCCEEEEEeCCC------eEE
Confidence 5677777754 368889887654322211 001111222222 556777777643 588
Q ss_pred EEECCCCcEEEeeecCCCCCCCcc-eEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCC
Q 010115 177 TFDTETECWSVVEAKGDIPVARSG-HTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (518)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~ 234 (518)
.||+.+.+-..... .+...... .+++. -++..++.|+.++ .+.+||+.+.
T Consensus 142 iwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~ 193 (366)
T 3k26_A 142 LWNIQTDTLVAIFG--GVEGHRDEVLSADYDLLGEKIMSCGMDH------SLKLWRINSK 193 (366)
T ss_dssp EEETTTTEEEEEEC--STTSCSSCEEEEEECTTSSEEEEEETTS------CEEEEESCSH
T ss_pred EEEeecCeEEEEec--ccccccCceeEEEECCCCCEEEEecCCC------CEEEEECCCC
Confidence 89998876443321 01111111 22222 2356667776543 4788888754
No 94
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=95.66 E-value=1.8 Score=43.02 Aligned_cols=224 Identities=15% Similarity=0.155 Sum_probs=107.0
Q ss_pred CcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeec
Q 010115 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 191 (518)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 191 (518)
+.|+++|..+.+...+-.. ..... .-.++.+ ++..++.|+.+. .|..||..+.+-.....
T Consensus 125 ~tV~lWd~~tg~~~~~~~~----------~~~~~-~V~sv~fspdg~~lasgs~Dg------~v~iWd~~~~~~~~~~~- 186 (420)
T 4gga_A 125 NSVYLWSASSGDILQLLQM----------EQPGE-YISSVAWIKEGNYLAVGTSSA------EVQLWDVQQQKRLRNMT- 186 (420)
T ss_dssp TEEEEEETTTCCEEEEEEC----------CSTTC-CEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEEEEC-
T ss_pred CEEEEEECCCCCEEEEEEe----------cCCCC-cEEEEEECCCCCEEEEEECCC------eEEEEEcCCCcEEEEEe-
Confidence 4689999998876654331 11111 1122333 567777777653 58889998876433221
Q ss_pred CCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEE-CCcEEEEEcCCCC
Q 010115 192 GDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSK 270 (518)
Q Consensus 192 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~~~ 270 (518)
.... ...+...++.+++.|+.+. .+..+|............+. .......... .+. .++.|+.++
T Consensus 187 --~h~~--~v~~~s~~~~~l~sgs~d~------~i~~~d~~~~~~~~~~~~~h---~~~~~~~~~~~~g~-~l~s~~~D~ 252 (420)
T 4gga_A 187 --SHSA--RVGSLSWNSYILSSGSRSG------HIHHHDVRVAEHHVATLSGH---SQEVCGLRWAPDGR-HLASGGNDN 252 (420)
T ss_dssp --CCSS--CEEEEEEETTEEEEEETTS------EEEEEETTSSSCEEEEEECC---SSCEEEEEECTTSS-EEEEEETTS
T ss_pred --CCCC--ceEEEeeCCCEEEEEeCCC------ceeEeeecccceeeEEeccc---ccceeeeeecCCCC-eeeeeeccc
Confidence 1112 2233445667777776553 36677765543322211111 1111122222 344 556665543
Q ss_pred CCCCCcEEEEEcCCCe--EEEeecCCCCCCCCcceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCC
Q 010115 271 SKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSS 346 (518)
Q Consensus 271 ~~~~~~v~~yd~~~~~--W~~v~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~ 346 (518)
.+..+|..+.. +..+.... .......+.+.. +..+++.+|.+.+ ..+.+||+.+..-.......
T Consensus 253 -----~v~i~~~~~~~~~~~~~~~~~--~~~~~V~~~~~~p~~~~~la~~~gs~D---~~I~iwd~~t~~~~~~~~~~-- 320 (420)
T 4gga_A 253 -----LVNVWPSAPGEGGWVPLQTFT--QHQGAVKAVAWCPWQSNVLATGGGTSD---RHIRIWNVCSGACLSAVDAH-- 320 (420)
T ss_dssp -----CEEEEESSCCSSCSCCSEEEC--CCSSCEEEEEECTTCTTEEEEEECTTT---CEEEEEETTTTEEEEEEECS--
T ss_pred -----cceEEeeccccccceeeeeec--ccCCceeeeeeCCCcccEEEEEeecCC---CEEEEEeCCccccceeeccc--
Confidence 36777765432 11111110 011111122222 4445555433222 34889999887655433211
Q ss_pred CCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 347 SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 347 ~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
.......+ ..+...+++.+|..+ +.+.+||..+.+
T Consensus 321 -----~~v~~~~~-~~~~~~lv~~sg~~d---~~I~iwd~~~~~ 355 (420)
T 4gga_A 321 -----SQVCSILW-SPHYKELISGHGFAQ---NQLVIWKYPTMA 355 (420)
T ss_dssp -----SCEEEEEE-ETTTTEEEEEECTTT---CCEEEEETTTCC
T ss_pred -----cceeeeee-cCCCCeEEEEEecCC---CEEEEEECCCCc
Confidence 11222223 234456666656433 268888876654
No 95
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=95.65 E-value=0.85 Score=44.58 Aligned_cols=188 Identities=11% Similarity=0.031 Sum_probs=92.4
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCcccCcEEEEEcCC
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS 233 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t 233 (518)
+++.++.|+... .|..||..+++-...-. .... .-.+++.. ++.+++.||.+. .+.+||+.+
T Consensus 150 dg~~l~sgs~dg------~v~iwd~~~~~~~~~~~---~h~~-~v~~v~~s~~~~~~~~s~~~dg------~v~~wd~~~ 213 (357)
T 4g56_B 150 DGTQAVSGGKDF------SVKVWDLSQKAVLKSYN---AHSS-EVNCVAACPGKDTIFLSCGEDG------RILLWDTRK 213 (357)
T ss_dssp SSSEEEEEETTS------CEEEEETTTTEEEEEEC---CCSS-CEEEEEECTTCSSCEEEEETTS------CEEECCTTS
T ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEEEEc---CCCC-CEEEEEEccCCCceeeeeccCC------ceEEEECCC
Confidence 566777777643 58888998876443321 1111 11222222 235777777654 377888876
Q ss_pred CcEEEeecCCCCCCCCCCcEEEEE---CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-C
Q 010115 234 LTWLPLHCTGTGPSPRSNHVAALY---DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-G 309 (518)
Q Consensus 234 ~~W~~~~~~g~~p~~r~~~~~~~~---~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~ 309 (518)
.+-.... ..........++.+ ++. +++.|+.++ .+..||+.+.+=...-. .....-.+++.. +
T Consensus 214 ~~~~~~~---~~~~~~~~v~~v~~sp~~~~-~la~g~~d~-----~i~~wd~~~~~~~~~~~----~~~~~v~~l~~sp~ 280 (357)
T 4g56_B 214 PKPATRI---DFCASDTIPTSVTWHPEKDD-TFACGDETG-----NVSLVNIKNPDSAQTSA----VHSQNITGLAYSYH 280 (357)
T ss_dssp SSCBCBC---CCTTCCSCEEEEEECTTSTT-EEEEEESSS-----CEEEEESSCGGGCEEEC----CCSSCEEEEEECSS
T ss_pred Cceeeee---eeccccccccchhhhhcccc-eEEEeeccc-----ceeEEECCCCcEeEEEe----ccceeEEEEEEcCC
Confidence 5432221 11111111222222 234 677776544 48899987653211111 011111222222 3
Q ss_pred -CEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEccc
Q 010115 310 -TKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (518)
Q Consensus 310 -~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~ 388 (518)
.++++.|+.++. +.+||..+.+....... ......+.+...+ ..+++.||.++ .|.++++.+
T Consensus 281 ~~~~lasgs~D~~-----i~iwd~~~~~~~~~~~H-------~~~V~~vafsP~d-~~~l~s~s~Dg----~v~iW~~~~ 343 (357)
T 4g56_B 281 SSPFLASISEDCT-----VAVLDADFSEVFRDLSH-------RDFVTGVAWSPLD-HSKFTTVGWDH----KVLHHHLPS 343 (357)
T ss_dssp SSCCEEEEETTSC-----EEEECTTSCEEEEECCC-------SSCEEEEEECSSS-TTEEEEEETTS----CEEEEECC-
T ss_pred CCCEEEEEeCCCE-----EEEEECCCCcEeEECCC-------CCCEEEEEEeCCC-CCEEEEEcCCC----eEEEEECCC
Confidence 356666765543 88999988765432210 1112333343212 34667777754 577888754
Q ss_pred C
Q 010115 389 N 389 (518)
Q Consensus 389 ~ 389 (518)
.
T Consensus 344 ~ 344 (357)
T 4g56_B 344 E 344 (357)
T ss_dssp -
T ss_pred C
Confidence 3
No 96
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=95.64 E-value=2.5 Score=44.77 Aligned_cols=152 Identities=14% Similarity=0.002 Sum_probs=84.8
Q ss_pred ceeEEEEECC-CC---cEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCC-CC
Q 010115 172 RVSVWTFDTE-TE---CWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTG-TG 245 (518)
Q Consensus 172 ~~~v~~yd~~-t~---~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g-~~ 245 (518)
..++|.+|+. ++ +...+... . .......+. -++++|+.+..++ ...++++|+.+.+++.+.... ..
T Consensus 216 ~~~i~~~d~~~~g~~~~~~~l~~~---~-~~~~~~~~~spdg~l~~~~~~~~----~~~l~~~~~~~~~~~~l~~~~~~~ 287 (662)
T 3azo_A 216 GTELKTARVTEDGRFADTRTLLGG---P-EEAIAQAEWAPDGSLIVATDRTG----WWNLHRVDPATGAATQLCRREEEF 287 (662)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEEE---T-TBCEEEEEECTTSCEEEEECTTS----SCEEEEECTTTCCEEESSCCSSBS
T ss_pred CcEEEEEEECCCCcccccEEeCCC---C-CceEcceEECCCCeEEEEECCCC----CeEEEEEECCCCceeecccccccc
Confidence 3579999998 56 44444321 1 111122222 2566777665443 246999999888998875210 01
Q ss_pred CCCCC---CcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEE-EEECCEEEEEcccCCC
Q 010115 246 PSPRS---NHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCG-VLCGTKWYIAGGGSRK 321 (518)
Q Consensus 246 p~~r~---~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~~ 321 (518)
-.+.. ....+...++.+++.+.. + ...+|.+|+++...+.+... . ...... ...++.+++..+...
T Consensus 288 ~~p~w~~~~~~~~~~~~~~~~~~~~~-~---~~~l~~~d~~~~~~~~l~~~----~-~~~~~~~s~~~~~~~~~~~~~~- 357 (662)
T 3azo_A 288 AGPLWTPGMRWFAPLANGLIAVVHGK-G---AAVLGILDPESGELVDAAGP----W-TEWAATLTVSGTRAVGVAASPR- 357 (662)
T ss_dssp SCCCCSTTCCSEEECTTSCEEEEEBS-S---SCEEEEEETTTTEEEECCSS----C-CEEEEEEEEETTEEEEEEEETT-
T ss_pred cCccccccCceEeEeCCCEEEEEEEc-C---ccEEEEEECCCCcEEEecCC----C-CeEEEEEecCCCEEEEEEcCCC-
Confidence 00111 112344433336655543 2 35799999988887776432 1 111222 334667766654322
Q ss_pred CCcCeEEEEECCCCceEEeec
Q 010115 322 KRHAETLIFDILKGEWSVAIT 342 (518)
Q Consensus 322 ~~~~~v~~yd~~~~~W~~~~~ 342 (518)
...++|.+|+.+.+.+.+..
T Consensus 358 -~~~~i~~~d~~~g~~~~l~~ 377 (662)
T 3azo_A 358 -TAYEVVELDTVTGRARTIGA 377 (662)
T ss_dssp -EEEEEEEEETTTCCEEEEES
T ss_pred -CCCEEEEEECCCCceEEeec
Confidence 23568999999998888753
No 97
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=95.63 E-value=1.9 Score=42.95 Aligned_cols=187 Identities=10% Similarity=0.071 Sum_probs=90.2
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCceeEE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~ 176 (518)
++.+++.|+.+ ..+.+||+.+..-...-. .....-.+++.. ++..++.|+.+. .+.
T Consensus 161 ~~~~l~sgs~D-----~~i~iwd~~~~~~~~~~~------------~h~~~V~~v~~~p~~~~l~s~s~D~------~i~ 217 (410)
T 1vyh_C 161 SGKLLASCSAD-----MTIKLWDFQGFECIRTMH------------GHDHNVSSVSIMPNGDHIVSASRDK------TIK 217 (410)
T ss_dssp TSSEEEEEETT-----SCCCEEETTSSCEEECCC------------CCSSCEEEEEECSSSSEEEEEETTS------EEE
T ss_pred CCCEEEEEeCC-----CeEEEEeCCCCceeEEEc------------CCCCCEEEEEEeCCCCEEEEEeCCC------eEE
Confidence 45677777755 346778887654322111 001111122222 456667777643 688
Q ss_pred EEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEE
Q 010115 177 TFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 255 (518)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~ 255 (518)
.||..+..-...-. .... .-..+.. .++.+++.|+.+. .+.+||+.+......- ... ...-.+++
T Consensus 218 ~wd~~~~~~~~~~~---~h~~-~v~~~~~~~~g~~l~s~s~D~------~v~vwd~~~~~~~~~~---~~h-~~~v~~~~ 283 (410)
T 1vyh_C 218 MWEVQTGYCVKTFT---GHRE-WVRMVRPNQDGTLIASCSNDQ------TVRVWVVATKECKAEL---REH-RHVVECIS 283 (410)
T ss_dssp EEETTTCCEEEEEE---CCSS-CEEEEEECTTSSEEEEEETTS------CEEEEETTTCCEEEEE---CCC-SSCEEEEE
T ss_pred EEECCCCcEEEEEe---CCCc-cEEEEEECCCCCEEEEEcCCC------eEEEEECCCCceeeEe---cCC-CceEEEEE
Confidence 89998876433221 0111 1111222 2466777777654 3777888776543321 000 00000111
Q ss_pred EE---------------------CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCEEE
Q 010115 256 LY---------------------DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWY 313 (518)
Q Consensus 256 ~~---------------------~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~iy 313 (518)
.. .+. +++.|+.++ .+..||+.+..=...-. + .. ..-.+++.. +++.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~sgs~D~-----~i~iwd~~~~~~~~~~~-~--h~-~~v~~v~~~~~g~~l 353 (410)
T 1vyh_C 284 WAPESSYSSISEATGSETKKSGKPGP-FLLSGSRDK-----TIKMWDVSTGMCLMTLV-G--HD-NWVRGVLFHSGGKFI 353 (410)
T ss_dssp ECCSCGGGGGGGCCSCC-------CC-EEEEEETTS-----EEEEEETTTTEEEEEEE-C--CS-SCEEEEEECSSSSCE
T ss_pred EcCcccccchhhhccccccccCCCCC-EEEEEeCCC-----eEEEEECCCCceEEEEE-C--CC-CcEEEEEEcCCCCEE
Confidence 11 134 566666543 48899987764221111 1 01 111122222 56667
Q ss_pred EEcccCCCCCcCeEEEEECCCCc
Q 010115 314 IAGGGSRKKRHAETLIFDILKGE 336 (518)
Q Consensus 314 v~GG~~~~~~~~~v~~yd~~~~~ 336 (518)
+.||.++ .+.++|..+.+
T Consensus 354 ~s~s~D~-----~i~vwd~~~~~ 371 (410)
T 1vyh_C 354 LSCADDK-----TLRVWDYKNKR 371 (410)
T ss_dssp EEEETTT-----EEEEECCTTSC
T ss_pred EEEeCCC-----eEEEEECCCCc
Confidence 7777553 48888886654
No 98
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=95.60 E-value=1.1 Score=42.65 Aligned_cols=236 Identities=12% Similarity=0.067 Sum_probs=110.1
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCCCceeEEE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWT 177 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 177 (518)
++.+++.|+.+ ..+..++............ .............+..++.|+.+. .+..
T Consensus 97 dg~~l~s~~~d-----~~i~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~s~s~d~------~~~~ 154 (340)
T 4aow_A 97 DGQFALSGSWD-----GTLRLWDLTTGTTTRRFVG-----------HTKDVLSVAFSSDNRQIVSGSRDK------TIKL 154 (340)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTTEEEEEEEC-----------CSSCEEEEEECTTSSCEEEEETTS------CEEE
T ss_pred CCCEEEEEccc-----ccceEEeecccceeeeecC-----------CCCceeEEEEeecCccceeecCCC------eEEE
Confidence 45666677654 3467778777655444331 011111111122455566666532 4666
Q ss_pred EECCCCcEEEeeecCCCCCCCcceEEEEE----CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcE
Q 010115 178 FDTETECWSVVEAKGDIPVARSGHTVVRA----SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV 253 (518)
Q Consensus 178 yd~~t~~W~~~~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~ 253 (518)
+|.....-..... ......-..+.+ .+.+++.|+.+. .+.+||+.+.+....- ... ...-.+
T Consensus 155 ~d~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~s~~~d~------~i~i~d~~~~~~~~~~---~~h-~~~v~~ 220 (340)
T 4aow_A 155 WNTLGVCKYTVQD----ESHSEWVSCVRFSPNSSNPIIVSCGWDK------LVKVWNLANCKLKTNH---IGH-TGYLNT 220 (340)
T ss_dssp ECTTSCEEEEECS----SSCSSCEEEEEECSCSSSCEEEEEETTS------CEEEEETTTTEEEEEE---CCC-SSCEEE
T ss_pred EEeCCCceEEEEe----ccccCcccceEEccCCCCcEEEEEcCCC------EEEEEECCCCceeeEe---cCC-CCcEEE
Confidence 7776554333221 111111111221 234566666543 3788998877654432 111 111223
Q ss_pred EEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCCCcCeEEEEECC
Q 010115 254 AALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDIL 333 (518)
Q Consensus 254 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~ 333 (518)
++...+..+++.|+.++ .+..||+.+..-...... .....+++...+..++.++.+ ..+.+||+.
T Consensus 221 ~~~s~~~~~l~s~s~Dg-----~i~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~d-----~~i~iwd~~ 285 (340)
T 4aow_A 221 VTVSPDGSLCASGGKDG-----QAMLWDLNEGKHLYTLDG-----GDIINALCFSPNRYWLCAATG-----PSIKIWDLE 285 (340)
T ss_dssp EEECTTSSEEEEEETTC-----EEEEEETTTTEEEEEEEC-----SSCEEEEEECSSSSEEEEEET-----TEEEEEETT
T ss_pred EEECCCCCEEEEEeCCC-----eEEEEEeccCceeeeecC-----CceEEeeecCCCCceeeccCC-----CEEEEEECC
Confidence 33443333777777654 488899876543322221 111222333344455566543 347888888
Q ss_pred CCceEEeecCCCCC--C-CCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 334 KGEWSVAITSPSSS--V-TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 334 ~~~W~~~~~~~~~~--~-~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
+..-.......... . .-......+.+.. + +.+++.||.++ .|.+||+++.+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-d-g~~l~sgs~Dg----~v~iW~~~tGt 339 (340)
T 4aow_A 286 GKIIVDELKQEVISTSSKAEPPQCTSLAWSA-D-GQTLFAGYTDN----LVRVWQVTIGT 339 (340)
T ss_dssp TTEEEEEECCC-------CCCCCEEEEEECT-T-SSEEEEEETTS----CEEEEEEEC--
T ss_pred CCeEEEeccccceeeeccCCCCCEEEEEECC-C-CCEEEEEeCCC----EEEEEeCCCcC
Confidence 76543322111000 0 0111223333332 2 33566777654 58888887653
No 99
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=95.54 E-value=1.7 Score=41.36 Aligned_cols=208 Identities=9% Similarity=0.014 Sum_probs=105.8
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCceeEE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~ 176 (518)
++.||+.+... ..+++||+.+.+...+... . ...-++++.. ++++|+...... .....++
T Consensus 55 ~g~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~-----------~-~~~~~~i~~~~dg~l~v~~~~~~--~~~~~i~ 115 (333)
T 2dg1_A 55 QGQLFLLDVFE-----GNIFKINPETKEIKRPFVS-----------H-KANPAAIKIHKDGRLFVCYLGDF--KSTGGIF 115 (333)
T ss_dssp TSCEEEEETTT-----CEEEEECTTTCCEEEEEEC-----------S-SSSEEEEEECTTSCEEEEECTTS--SSCCEEE
T ss_pred CCCEEEEECCC-----CEEEEEeCCCCcEEEEeeC-----------C-CCCcceEEECCCCcEEEEeCCCC--CCCceEE
Confidence 46688876533 4689999998887765421 0 1122344443 567887754321 1124699
Q ss_pred EEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEE
Q 010115 177 TFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 255 (518)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~ 255 (518)
+||+.+.....+... ......-..++.. ++.+|+.............++++|+.+.+...+.. ... .....+
T Consensus 116 ~~d~~~~~~~~~~~~--~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~---~~~~i~ 188 (333)
T 2dg1_A 116 AATENGDNLQDIIED--LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ--NIS---VANGIA 188 (333)
T ss_dssp EECTTSCSCEEEECS--SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE--EES---SEEEEE
T ss_pred EEeCCCCEEEEEEcc--CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec--CCC---cccceE
Confidence 999998876643221 1111222233332 56788754322111223568999988777665531 111 112333
Q ss_pred EEC-CcEEEEEcCCCCCCCCCcEEEEEcCC--CeEEEeecC--CCCCCCCcceEEEEE-CCEEEEEcccCCCCCcCeEEE
Q 010115 256 LYD-DKNLLIFGGSSKSKTLNDLYSLDFET--MIWTRIKIR--GFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLI 329 (518)
Q Consensus 256 ~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~--~~W~~v~~~--~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~ 329 (518)
... ++.+|+.... .+.+++||+.+ .....+... ...+....-.+++.. ++++|+..... ..+.+
T Consensus 189 ~~~dg~~l~v~~~~-----~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~-----~~v~~ 258 (333)
T 2dg1_A 189 LSTDEKVLWVTETT-----ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQ-----GRVLV 258 (333)
T ss_dssp ECTTSSEEEEEEGG-----GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETT-----TEEEE
T ss_pred ECCCCCEEEEEeCC-----CCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCC-----CEEEE
Confidence 333 3447776422 24699999853 233322100 000111111223332 57788875322 35899
Q ss_pred EECCCCceEEee
Q 010115 330 FDILKGEWSVAI 341 (518)
Q Consensus 330 yd~~~~~W~~~~ 341 (518)
||++...-..+.
T Consensus 259 ~d~~g~~~~~~~ 270 (333)
T 2dg1_A 259 FNKRGYPIGQIL 270 (333)
T ss_dssp ECTTSCEEEEEE
T ss_pred ECCCCCEEEEEE
Confidence 999665544443
No 100
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=95.51 E-value=1.3 Score=42.11 Aligned_cols=197 Identities=8% Similarity=0.039 Sum_probs=89.4
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECC--CCcEEEeeecCCCCCCCcceEEEEE-C-CEEEEEcccCCCCcccCcEEEEEc
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTE--TECWSVVEAKGDIPVARSGHTVVRA-S-SVLILFGGEDGKRRKLNDLHMFDL 231 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~--t~~W~~~~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~yd~ 231 (518)
++.||+.+... ..+..|++. +++++.+.. .+....-..++.. + ..||+.+..+ ..+.+||+
T Consensus 49 g~~l~~~~~~~------~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~dg~~l~~~~~~~------~~i~~~d~ 113 (343)
T 1ri6_A 49 KRYLYVGVRPE------FRVLAYRIAPDDGALTFAAE---SALPGSLTHISTDHQGQFVFVGSYNA------GNVSVTRL 113 (343)
T ss_dssp SSEEEEEETTT------TEEEEEEECTTTCCEEEEEE---EECSSCCSEEEECTTSSEEEEEETTT------TEEEEEEE
T ss_pred CCEEEEeecCC------CeEEEEEecCCCCceeeccc---cccCCCCcEEEEcCCCCEEEEEecCC------CeEEEEEC
Confidence 34566654431 245555554 778776643 2211122333332 3 3566654322 34788887
Q ss_pred CCC-cEEEeecCCCCCCCCCCcEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCC-CeEEEee--cCCCCCCCCcceEEE
Q 010115 232 KSL-TWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFET-MIWTRIK--IRGFHPSPRAGCCGV 306 (518)
Q Consensus 232 ~t~-~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~-~~W~~v~--~~~~~p~~r~~~~~~ 306 (518)
... ....+.. .+....-+.++.. +++.+|+.+..+ +.+..||+.+ .+...+. .... +....-..++
T Consensus 114 ~~~~~~~~~~~---~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 184 (343)
T 1ri6_A 114 EDGLPVGVVDV---VEGLDGCHSANISPDNRTLWVPALKQ-----DRICLFTVSDDGHLVAQDPAEVTT-VEGAGPRHMV 184 (343)
T ss_dssp ETTEEEEEEEE---ECCCTTBCCCEECTTSSEEEEEEGGG-----TEEEEEEECTTSCEEEEEEEEEEC-STTCCEEEEE
T ss_pred CCCcccccccc---ccCCCCceEEEECCCCCEEEEecCCC-----CEEEEEEecCCCceeeeccccccc-CCCCCcceEE
Confidence 422 2222221 1111112233343 344566654222 3599999987 6665433 1100 1111111222
Q ss_pred EE-CC-EEEEEcccCCCCCcCeEEEEECC--CCceEEeec---CCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCC
Q 010115 307 LC-GT-KWYIAGGGSRKKRHAETLIFDIL--KGEWSVAIT---SPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSN 379 (518)
Q Consensus 307 ~~-~~-~iyv~GG~~~~~~~~~v~~yd~~--~~~W~~~~~---~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~ 379 (518)
.. ++ .+|+.+... +.+.+||+. +.++..+.. .+.. .........+.+. ++...||+.+..+ +
T Consensus 185 ~~pdg~~l~~~~~~~-----~~i~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~i~~s-~dg~~l~v~~~~~----~ 253 (343)
T 1ri6_A 185 FHPNEQYAYCVNELN-----SSVDVWELKDPHGNIECVQTLDMMPEN-FSDTRWAADIHIT-PDGRHLYACDRTA----S 253 (343)
T ss_dssp ECTTSSEEEEEETTT-----TEEEEEESSCTTSCCEEEEEEECSCTT-CCSCCCEEEEEEC-TTSSEEEEEETTT----T
T ss_pred ECCCCCEEEEEeCCC-----CEEEEEEecCCCCcEEEEeeccccCcc-ccccCCccceEEC-CCCCEEEEEecCC----C
Confidence 22 34 577765432 358888884 455543321 1111 0111122234443 3334676655332 3
Q ss_pred cEEEEEcc
Q 010115 380 QVEVLSIE 387 (518)
Q Consensus 380 ~v~~yd~~ 387 (518)
.+.+||+.
T Consensus 254 ~i~v~d~~ 261 (343)
T 1ri6_A 254 LITVFSVS 261 (343)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEc
Confidence 68888887
No 101
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=95.49 E-value=1.9 Score=41.40 Aligned_cols=199 Identities=15% Similarity=0.171 Sum_probs=94.4
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCC--CcEEEeeecCCCCCCCcc-eEEEE-ECCEEEEEcccCCCCcccCcEEEEEc
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTET--ECWSVVEAKGDIPVARSG-HTVVR-ASSVLILFGGEDGKRRKLNDLHMFDL 231 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t--~~W~~~~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~ 231 (518)
+++.++.|+.+. .+..||+.. ..++.+.. +...... .++.. -++.+++.|+.+. .+.++|.
T Consensus 118 ~g~~las~s~D~------~v~iwd~~~~~~~~~~~~~---~~~h~~~v~~v~~~p~~~~l~s~s~D~------~i~iW~~ 182 (330)
T 2hes_X 118 DGYYLATCSRDK------SVWIWETDESGEEYECISV---LQEHSQDVKHVIWHPSEALLASSSYDD------TVRIWKD 182 (330)
T ss_dssp TSCEEEEEETTS------CEEEEECCTTCCCCEEEEE---ECCCSSCEEEEEECSSSSEEEEEETTS------CEEEEEE
T ss_pred CCCEEEEEeCCC------EEEEEeccCCCCCeEEEEE---eccCCCceEEEEECCCCCEEEEEcCCC------eEEEEEC
Confidence 466777777643 477788743 34544432 1111111 12222 2456777777654 3777888
Q ss_pred CCCcEEEeecCCCCCCCCCCcEEEEECC--cEEEEEcCCCCCCCCCcEEEEEcCC------CeEEEeecCCCCCCCCcce
Q 010115 232 KSLTWLPLHCTGTGPSPRSNHVAALYDD--KNLLIFGGSSKSKTLNDLYSLDFET------MIWTRIKIRGFHPSPRAGC 303 (518)
Q Consensus 232 ~t~~W~~~~~~g~~p~~r~~~~~~~~~~--~~lyv~GG~~~~~~~~~v~~yd~~~------~~W~~v~~~~~~p~~r~~~ 303 (518)
.+..|..+.... .. ...-.++....+ ..+++.|+.++ .+..||+.+ ..|..+..... .....-.
T Consensus 183 ~~~~~~~~~~~~-~h-~~~v~~~~~~~~~~~~~l~s~s~D~-----~v~iw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~ 254 (330)
T 2hes_X 183 YDDDWECVAVLN-GH-EGTVWSSDFDKTEGVFRLCSGSDDS-----TVRVWKYMGDDEDDQQEWVCEAILPD-VHKRQVY 254 (330)
T ss_dssp ETTEEEEEEEEC-CC-SSCEEEEEECCSSSSCEEEEEETTS-----CEEEEEEEEECTTSCEEEEEEEECCS-CCSSCEE
T ss_pred CCCCeeEEEEcc-CC-CCcEEEEEecCCCCeeEEEEEeCCC-----eEEEEEecCCCccccceeEEeeeccc-ccccceE
Confidence 777776654210 01 111112223332 32566666554 355565532 34655544311 0112222
Q ss_pred EEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEE
Q 010115 304 CGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEV 383 (518)
Q Consensus 304 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~ 383 (518)
+++...+.+++.||.++. +.+||..+..|..+...... ........+.+...+.+.+++.||.++ .|.+
T Consensus 255 ~v~~s~~~~l~s~~~dg~-----v~iw~~~~~~~~~~~~~~~~--h~~~~v~~v~~~~~~~~~~las~s~Dg----~v~~ 323 (330)
T 2hes_X 255 NVAWGFNGLIASVGADGV-----LAVYEEVDGEWKVFAKRALC--HGVYEINVVKWLELNGKTILATGGDDG----IVNF 323 (330)
T ss_dssp EEEECTTSCEEEEETTSC-----EEEEEEETTEEEEEEEESCT--TTTSCEEEEEEC-----CCEEEEETTS----EEEE
T ss_pred EEEEcCCCEEEEEeCCCE-----EEEEEcCCCceEEEeccccc--cccceEEEEEEecCCCceEEEEecCCC----cEEE
Confidence 333334556677775543 88899888888665421100 111122333333211244677787764 4677
Q ss_pred EEccc
Q 010115 384 LSIEK 388 (518)
Q Consensus 384 yd~~~ 388 (518)
+|+++
T Consensus 324 W~~~~ 328 (330)
T 2hes_X 324 WSLEK 328 (330)
T ss_dssp EEC--
T ss_pred EEecc
Confidence 76543
No 102
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=95.44 E-value=2 Score=41.49 Aligned_cols=246 Identities=13% Similarity=0.140 Sum_probs=110.2
Q ss_pred EEEEcCcCCCCCCCcE--EEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCceeEE
Q 010115 101 MIVVGGESGNGLLDDV--QVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVW 176 (518)
Q Consensus 101 lyv~GG~~~~~~~~~v--~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~ 176 (518)
.+++|.+... ....+ |.+|..+.+++.+... . ...-..++.. +..||+.+.... ....-.+|
T Consensus 15 ~~~vg~y~~~-~~~~i~~~~~d~~~g~~~~~~~~-~-----------~~~p~~l~~spdg~~l~~~~~~~~-~~~~v~~~ 80 (361)
T 3scy_A 15 TMLVGTYTSG-NSKGIYTFRFNEETGESLPLSDA-E-----------VANPSYLIPSADGKFVYSVNEFSK-DQAAVSAF 80 (361)
T ss_dssp EEEEEECCSS-SCCEEEEEEEETTTCCEEEEEEE-E-----------CSCCCSEEECTTSSEEEEEECCSS-TTCEEEEE
T ss_pred EEEEEeccCC-CCCCEEEEEEeCCCCCEEEeecc-c-----------CCCCceEEECCCCCEEEEEEccCC-CCCcEEEE
Confidence 3445655432 12334 5556677777776542 0 0011112222 345776655321 12233467
Q ss_pred EEECCCCcEEEeeecCCCCC-CCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCc-EE----EeecCCCCCCC--
Q 010115 177 TFDTETECWSVVEAKGDIPV-ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT-WL----PLHCTGTGPSP-- 248 (518)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~----~~~~~g~~p~~-- 248 (518)
.++..+++.+.+.. .+. ...-..++..++.||+....+ ..+.+|++.+.. .. .+...+..|.+
T Consensus 81 ~~~~~~g~~~~~~~---~~~~~~~p~~~~~dg~~l~~~~~~~------~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~ 151 (361)
T 3scy_A 81 AFDKEKGTLHLLNT---QKTMGADPCYLTTNGKNIVTANYSG------GSITVFPIGQDGALLPASDVIEFKGSGPDKER 151 (361)
T ss_dssp EEETTTTEEEEEEE---EECSSSCEEEEEECSSEEEEEETTT------TEEEEEEBCTTSCBCSCSEEEECCCCCSCTTT
T ss_pred EEeCCCCcEEEeeE---eccCCCCcEEEEECCCEEEEEECCC------CEEEEEEeCCCCcCcccceeEEccCCCCCccc
Confidence 77777788776654 221 112222333344566654221 357788876432 11 11111122211
Q ss_pred ---CCCcEEEEEC-CcEEEEEcCCCCCCCCCcEEEEEcCCCe-------EEEe-----ecCCCCCCCCcceEEEEE-CC-
Q 010115 249 ---RSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMI-------WTRI-----KIRGFHPSPRAGCCGVLC-GT- 310 (518)
Q Consensus 249 ---r~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~-------W~~v-----~~~~~~p~~r~~~~~~~~-~~- 310 (518)
...|.++... ++.+|+.+.. .+.+++|++.... .... ... +....-..++.. ++
T Consensus 152 ~~~~~~~~~~~spdg~~l~~~~~~-----~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~spdg~ 223 (361)
T 3scy_A 152 QTMPHLHCVRITPDGKYLLADDLG-----TDQIHKFNINPNANADNKEKFLTKGTPEAFKV---APGSGPRHLIFNSDGK 223 (361)
T ss_dssp CSSCCEEEEEECTTSSEEEEEETT-----TTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC---CTTCCEEEEEECTTSS
T ss_pred cCCCcceEEEECCCCCEEEEEeCC-----CCEEEEEEEcCCCCcccccceeecccccceec---CCCCCCeEEEEcCCCC
Confidence 1124444544 4446665422 2357777765433 2111 111 111111122332 44
Q ss_pred EEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcc
Q 010115 311 KWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIE 387 (518)
Q Consensus 311 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~ 387 (518)
.+|+.+... +.+.+||+.+++++.+...+.. +....+...+.+.. +..+||+..... .+.+.+|++.
T Consensus 224 ~l~v~~~~~-----~~v~v~~~~~g~~~~~~~~~~~-~~~~~~~~~i~~sp-dg~~l~v~~~~~---~~~i~v~~~~ 290 (361)
T 3scy_A 224 FAYLINEIG-----GTVIAFRYADGMLDEIQTVAAD-TVNAQGSGDIHLSP-DGKYLYASNRLK---ADGVAIFKVD 290 (361)
T ss_dssp EEEEEETTT-----CEEEEEEEETTEEEEEEEEESC-SSCCCCEEEEEECT-TSSEEEEEECSS---SCEEEEEEEC
T ss_pred EEEEEcCCC-----CeEEEEEecCCceEEeEEEecC-CCCCCCcccEEECC-CCCEEEEECCCC---CCEEEEEEEc
Confidence 577765322 4588899888877655432211 11112233444543 334566544320 2367777775
No 103
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=95.39 E-value=0.32 Score=49.05 Aligned_cols=192 Identities=10% Similarity=0.044 Sum_probs=93.9
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEE--ECCEEEEEcCcCCCCCCceeE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS--WGKKVLLVGGKTDSGSDRVSV 175 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v 175 (518)
++.+++.|+.+ ..|.+||..+..-...... ......-.+++. .++.+++.|+.+. .|
T Consensus 131 ~~~~lasGs~d-----g~i~lWd~~~~~~~~~~~~----------~gH~~~V~~l~f~p~~~~~l~s~s~D~------~v 189 (435)
T 4e54_B 131 HPSTVAVGSKG-----GDIMLWNFGIKDKPTFIKG----------IGAGGSITGLKFNPLNTNQFYASSMEG------TT 189 (435)
T ss_dssp CTTCEEEEETT-----SCEEEECSSCCSCCEEECC----------CSSSCCCCEEEECSSCTTEEEEECSSS------CE
T ss_pred CCCEEEEEeCC-----CEEEEEECCCCCceeEEEc----------cCCCCCEEEEEEeCCCCCEEEEEeCCC------EE
Confidence 45678888765 3588888876543322210 000111122332 2456677777643 47
Q ss_pred EEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCC-cE
Q 010115 176 WTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN-HV 253 (518)
Q Consensus 176 ~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~-~~ 253 (518)
..+|++++............ ....++.. -++.+++.|+.++ .+.++|+....-..+. .-... .+
T Consensus 190 ~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~g~~dg------~i~~wd~~~~~~~~~~------~h~~~v~~ 255 (435)
T 4e54_B 190 RLQDFKGNILRVFASSDTIN--IWFCSLDVSASSRMVVTGDNVG------NVILLNMDGKELWNLR------MHKKKVTH 255 (435)
T ss_dssp EEEETTSCEEEEEECCSSCS--CCCCCEEEETTTTEEEEECSSS------BEEEEESSSCBCCCSB------CCSSCEEE
T ss_pred EEeeccCCceeEEeccCCCC--ccEEEEEECCCCCEEEEEeCCC------cEeeeccCcceeEEEe------cccceEEe
Confidence 78899888766554311111 11122333 3567777777554 4788888654321111 11111 12
Q ss_pred EEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEcccCCCCCcCeEEEE
Q 010115 254 AALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIF 330 (518)
Q Consensus 254 ~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~y 330 (518)
++.. .+..+++.|+.++ .|..||+.+..-...... ...-.....++.+ +++.++.|+.++. +.+|
T Consensus 256 v~~~p~~~~~~~s~s~d~-----~v~iwd~~~~~~~~~~~~--~~~h~~~v~~~~~spdg~~l~s~~~D~~-----i~iw 323 (435)
T 4e54_B 256 VALNPCCDWFLATASVDQ-----TVKIWDLRQVRGKASFLY--SLPHRHPVNAACFSPDGARLLTTDQKSE-----IRVY 323 (435)
T ss_dssp EEECTTCSSEEEEEETTS-----BCCEEETTTCCSSSCCSB--CCBCSSCEEECCBCTTSSEEEEEESSSC-----EEEE
T ss_pred eeecCCCceEEEEecCcc-----eeeEEecccccccceEEE--eeeccccccceeECCCCCeeEEEcCCCE-----EEEE
Confidence 2222 2333666676544 367788765431110000 0000111112222 5667777776544 8889
Q ss_pred ECCCCc
Q 010115 331 DILKGE 336 (518)
Q Consensus 331 d~~~~~ 336 (518)
|+.+..
T Consensus 324 d~~~~~ 329 (435)
T 4e54_B 324 SASQWD 329 (435)
T ss_dssp ESSSSS
T ss_pred ECCCCc
Confidence 987654
No 104
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=95.38 E-value=1.8 Score=40.63 Aligned_cols=249 Identities=10% Similarity=0.063 Sum_probs=120.8
Q ss_pred CCEEEEEcCcC--CCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-C-CEEEEEcCcCCCCCCce
Q 010115 98 GNKMIVVGGES--GNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-G-KKVLLVGGKTDSGSDRV 173 (518)
Q Consensus 98 ~~~lyv~GG~~--~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~ 173 (518)
++.+|+..... .......+++||+.+.++..+.... .......-++++.. + +.+|+.... +
T Consensus 28 ~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~--------~~~~~~~~~~i~~~~~~g~l~v~~~~-------~ 92 (314)
T 1pjx_A 28 NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPE--------VNGYGGIPAGCQCDRDANQLFVADMR-------L 92 (314)
T ss_dssp TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCE--------ETTEECCEEEEEECSSSSEEEEEETT-------T
T ss_pred CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecc--------cCCCCCCCceEEEecCCCcEEEEECC-------C
Confidence 46788871100 0011246899998888876653200 00000112344443 4 688887542 1
Q ss_pred eEEEEECCCCcEEEe-eecCCCCCCCcceEEEE-ECCEEEEEcccCC---------CCcccCcEEEEEcCCCcEEEeecC
Q 010115 174 SVWTFDTETECWSVV-EAKGDIPVARSGHTVVR-ASSVLILFGGEDG---------KRRKLNDLHMFDLKSLTWLPLHCT 242 (518)
Q Consensus 174 ~v~~yd~~t~~W~~~-~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~---------~~~~~~~~~~yd~~t~~W~~~~~~ 242 (518)
.+++||+. ++...+ ...........-+.++. -++.+|+...... .......+++||+. .+...+..
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~- 169 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT- 169 (314)
T ss_dssp EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-
T ss_pred CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc-
Confidence 58999998 776655 32110011111233333 3578887654321 11123568999986 55555421
Q ss_pred CCCCCCCCCcEEEEE----CCc-EEEEEcCCCCCCCCCcEEEEEcC-CCeEEEeecCCCCCCC--CcceEEEEE-CCEEE
Q 010115 243 GTGPSPRSNHVAALY----DDK-NLLIFGGSSKSKTLNDLYSLDFE-TMIWTRIKIRGFHPSP--RAGCCGVLC-GTKWY 313 (518)
Q Consensus 243 g~~p~~r~~~~~~~~----~~~-~lyv~GG~~~~~~~~~v~~yd~~-~~~W~~v~~~~~~p~~--r~~~~~~~~-~~~iy 313 (518)
....+ ...+.. .+. .+|+.... .+.+++||++ +.++.........+.. ..-..++.. ++.+|
T Consensus 170 -~~~~~---~~i~~~~~~d~dg~~l~v~~~~-----~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~ 240 (314)
T 1pjx_A 170 -AFQFP---NGIAVRHMNDGRPYQLIVAETP-----TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLL 240 (314)
T ss_dssp -EESSE---EEEEEEECTTSCEEEEEEEETT-----TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEE
T ss_pred -CCCCc---ceEEEecccCCCCCEEEEEECC-----CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEE
Confidence 11111 233444 343 46776432 2469999976 4444322111001111 111223332 57888
Q ss_pred EEcccCCCCCcCeEEEEECCCCce-EEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 314 IAGGGSRKKRHAETLIFDILKGEW-SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 314 v~GG~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
+..... +.+.+||+.+.+. ..+. .+. .....+.+. .+...||+....+ +.+++|++...-
T Consensus 241 v~~~~~-----~~i~~~d~~~g~~~~~~~-~~~------~~~~~i~~~-~dg~~l~v~~~~~----~~l~~~~~~~~g 301 (314)
T 1pjx_A 241 VANWGS-----SHIEVFGPDGGQPKMRIR-CPF------EKPSNLHFK-PQTKTIFVTEHEN----NAVWKFEWQRNG 301 (314)
T ss_dssp EEEETT-----TEEEEECTTCBSCSEEEE-CSS------SCEEEEEEC-TTSSEEEEEETTT----TEEEEEECSSCB
T ss_pred EEEcCC-----CEEEEEcCCCCcEeEEEe-CCC------CCceeEEEC-CCCCEEEEEeCCC----CeEEEEeCCCCC
Confidence 875322 3589999985443 2222 111 122333442 3334577655432 478999987643
No 105
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=95.37 E-value=2.7 Score=45.33 Aligned_cols=212 Identities=8% Similarity=-0.017 Sum_probs=107.0
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CC-EEEEEcCcCCCC------
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GK-KVLLVGGKTDSG------ 169 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~------ 169 (518)
+++.++++..........++++|+.+.+........ . ....++-. ++ .||+.. .....
T Consensus 135 Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~------------~-~~~~~~wspDg~~l~~~~-~~~~~~~~~~~ 200 (710)
T 2xdw_A 135 DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER------------V-KFSCMAWTHDGKGMFYNA-YPQQDGKSDGT 200 (710)
T ss_dssp TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE------------E-CSCCEEECTTSSEEEEEE-CCCCSSCCSSS
T ss_pred CCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC------------c-ccceEEEEeCCCEEEEEE-ECCcccccccc
Confidence 455444443221112237899999998876643210 0 11112221 44 454443 22210
Q ss_pred ----CCceeEEEEECCCCcEE--EeeecCCCCCCCcceEEEE-ECC-EEEEEcccCCCCcccCcEEEEEcCC------C-
Q 010115 170 ----SDRVSVWTFDTETECWS--VVEAKGDIPVARSGHTVVR-ASS-VLILFGGEDGKRRKLNDLHMFDLKS------L- 234 (518)
Q Consensus 170 ----~~~~~v~~yd~~t~~W~--~~~~~~~~p~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~t------~- 234 (518)
.....|+++++.+.+.+ .+.. ....+........ -++ .|++....... ..++++++|+.+ .
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~--~~~~~~~~~~~~~SpDg~~l~~~~~~~~~--~~~~l~~~d~~~~~~~~~~~ 276 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAE--FPDEPKWMGGAELSDDGRYVLLSIREGCD--PVNRLWYCDLQQESNGITGI 276 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEEC--CTTCTTCEEEEEECTTSCEEEEEEECSSS--SCCEEEEEEGGGSSSSSCSS
T ss_pred ccccCCCCEEEEEECCCCcccceEEec--cCCCCeEEEEEEEcCCCCEEEEEEEccCC--CccEEEEEECcccccccCCc
Confidence 12346999999887642 2221 1111222223333 234 44444332221 246899999976 4
Q ss_pred -cEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC---eEEEeecCCCCCCCCcceEEEEE-C
Q 010115 235 -TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM---IWTRIKIRGFHPSPRAGCCGVLC-G 309 (518)
Q Consensus 235 -~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~---~W~~v~~~~~~p~~r~~~~~~~~-~ 309 (518)
.+..+... ... .......+++.||+.+..+. ....|+.+|+.+. .|+.+... .....-...... +
T Consensus 277 ~~~~~l~~~---~~~--~~~~~s~dg~~l~~~s~~~~--~~~~l~~~d~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~ 346 (710)
T 2xdw_A 277 LKWVKLIDN---FEG--EYDYVTNEGTVFTFKTNRHS--PNYRLINIDFTDPEESKWKVLVPE---HEKDVLEWVACVRS 346 (710)
T ss_dssp CCCEEEECS---SSS--CEEEEEEETTEEEEEECTTC--TTCEEEEEETTSCCGGGCEEEECC---CSSCEEEEEEEETT
T ss_pred cceEEeeCC---CCc--EEEEEeccCCEEEEEECCCC--CCCEEEEEeCCCCCcccceeccCC---CCCCeEEEEEEEcC
Confidence 57777521 111 12233445565777765432 2457999999775 58888653 111122233444 6
Q ss_pred CEEEEEcccCCCCCcCeEEEEECCCCc-eEEe
Q 010115 310 TKWYIAGGGSRKKRHAETLIFDILKGE-WSVA 340 (518)
Q Consensus 310 ~~iyv~GG~~~~~~~~~v~~yd~~~~~-W~~~ 340 (518)
+.+++...... ...++++|+.+++ ...+
T Consensus 347 ~~lv~~~~~~g---~~~l~~~~~~~g~~~~~l 375 (710)
T 2xdw_A 347 NFLVLCYLHDV---KNTLQLHDLATGALLKIF 375 (710)
T ss_dssp TEEEEEEEETT---EEEEEEEETTTCCEEEEE
T ss_pred CEEEEEEEECC---EEEEEEEECCCCCEEEec
Confidence 77777765432 2568999985554 4444
No 106
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=95.36 E-value=2.4 Score=41.75 Aligned_cols=231 Identities=11% Similarity=0.044 Sum_probs=113.1
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCceeEE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~ 176 (518)
++.+++.|+.+ ..+.+||+.+..-...-. .....-.+++.. ++.+++.|+.+. .+.
T Consensus 108 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~------------~h~~~v~~~~~~~~~~~l~s~s~d~------~i~ 164 (420)
T 3vl1_A 108 QMRRFILGTTE-----GDIKVLDSNFNLQREIDQ------------AHVSEITKLKFFPSGEALISSSQDM------QLK 164 (420)
T ss_dssp SSCEEEEEETT-----SCEEEECTTSCEEEEETT------------SSSSCEEEEEECTTSSEEEEEETTS------EEE
T ss_pred CCCEEEEEECC-----CCEEEEeCCCcceeeecc------------cccCccEEEEECCCCCEEEEEeCCC------eEE
Confidence 56677777754 468889887665433211 111111223322 456667776543 688
Q ss_pred EEECCCCcEE-EeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEE
Q 010115 177 TFDTETECWS-VVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (518)
Q Consensus 177 ~yd~~t~~W~-~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~ 254 (518)
.||+.+.+-. .+.. . ...-.+++.. ++..++.|+.+. .+.+||+.+.+-...-.....+. ....+.
T Consensus 165 iwd~~~~~~~~~~~~----h-~~~v~~~~~~~~~~~l~s~~~d~------~v~iwd~~~~~~~~~~~~~~~~~-~~v~~~ 232 (420)
T 3vl1_A 165 IWSVKDGSNPRTLIG----H-RATVTDIAIIDRGRNVLSASLDG------TIRLWECGTGTTIHTFNRKENPH-DGVNSI 232 (420)
T ss_dssp EEETTTCCCCEEEEC----C-SSCEEEEEEETTTTEEEEEETTS------CEEEEETTTTEEEEEECBTTBTT-CCEEEE
T ss_pred EEeCCCCcCceEEcC----C-CCcEEEEEEcCCCCEEEEEcCCC------cEEEeECCCCceeEEeecCCCCC-CCccEE
Confidence 8998876422 2211 1 1111223333 456666776554 37888988765433221000010 001111
Q ss_pred EE---------------------ECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCE-
Q 010115 255 AL---------------------YDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK- 311 (518)
Q Consensus 255 ~~---------------------~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~- 311 (518)
+. ..+..+++.|+.++ .+..||+.+..-...... .......+++.. ++.
T Consensus 233 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~ 304 (420)
T 3vl1_A 233 ALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG-----VITVHNVFSKEQTIQLPS---KFTCSCNSLTVDGNNAN 304 (420)
T ss_dssp EEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS-----CEEEEETTTCCEEEEECC---TTSSCEEEEEECSSCTT
T ss_pred EEecCCcceeeecccCcccceEEcCCCCEEEEEcCCC-----eEEEEECCCCceeEEccc---ccCCCceeEEEeCCCCC
Confidence 11 12333666666543 489999877653222211 111111222222 444
Q ss_pred EEEEcccCCCCCcCeEEEEECCCCce--EEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccC
Q 010115 312 WYIAGGGSRKKRHAETLIFDILKGEW--SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (518)
Q Consensus 312 iyv~GG~~~~~~~~~v~~yd~~~~~W--~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~ 389 (518)
+++.|+.++ .+.+||+.+..- ..+... .......+... .+.+++.|+.++ .+.+||+...
T Consensus 305 ~l~~g~~dg-----~i~vwd~~~~~~~~~~~~~~------~~~~v~~~~~~---~~~~l~s~~~d~----~v~iw~~~~~ 366 (420)
T 3vl1_A 305 YIYAGYENG-----MLAQWDLRSPECPVGEFLIN------EGTPINNVYFA---AGALFVSSGFDT----SIKLDIISDP 366 (420)
T ss_dssp EEEEEETTS-----EEEEEETTCTTSCSEEEEES------TTSCEEEEEEE---TTEEEEEETTTE----EEEEEEECCT
T ss_pred EEEEEeCCC-----eEEEEEcCCCcCchhhhhcc------CCCCceEEEeC---CCCEEEEecCCc----cEEEEeccCC
Confidence 777777553 489999987532 332211 11122333333 244677777653 5788887663
No 107
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=95.35 E-value=0.73 Score=44.83 Aligned_cols=199 Identities=14% Similarity=0.091 Sum_probs=83.0
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCc-EEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcee
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFS-WTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVS 174 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 174 (518)
++.+++.|+.+ ..+.+||..+.. |...... .... ..-..+.+ +++.++.|+.+. .
T Consensus 66 ~~~~l~s~s~d-----~~v~vwd~~~~~~~~~~~~~----------~~~~-~~v~~~~~~~~~~~l~~~~~d~------~ 123 (377)
T 3dwl_C 66 KSNRIVTCSQD-----RNAYVYEKRPDGTWKQTLVL----------LRLN-RAATFVRWSPNEDKFAVGSGAR------V 123 (377)
T ss_dssp TTCCEEEEETT-----SSEEEC------CCCCEEEC----------CCCS-SCEEEEECCTTSSCCEEEESSS------C
T ss_pred CCCEEEEEeCC-----CeEEEEEcCCCCceeeeeEe----------cccC-CceEEEEECCCCCEEEEEecCC------e
Confidence 45677777754 358888888765 4433321 1111 11122222 456666766543 4
Q ss_pred EEEEECCCCc-EEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCcccCcEEEEEcCCCc----------------E
Q 010115 175 VWTFDTETEC-WSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLT----------------W 236 (518)
Q Consensus 175 v~~yd~~t~~-W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~----------------W 236 (518)
+..||..+.+ |....... .+....-.+++.. ++.+++.|+.+. .+.+||+.+.. -
T Consensus 124 i~iwd~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 196 (377)
T 3dwl_C 124 ISVCYFEQENDWWVSKHLK-RPLRSTILSLDWHPNNVLLAAGCADR------KAYVLSAYVRDVDAKPEASVWGSRLPFN 196 (377)
T ss_dssp EEECCC-----CCCCEEEC-SSCCSCEEEEEECTTSSEEEEEESSS------CEEEEEECCSSCC-CCCSCSSCSCCCEE
T ss_pred EEEEEECCcccceeeeEee-cccCCCeEEEEEcCCCCEEEEEeCCC------EEEEEEEEecccCCCccccccccccchh
Confidence 7777877664 33222200 1111222223332 456777777653 37778875432 1
Q ss_pred EEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeE--EEeecCCCCCCCCcceEEEE-ECCEEE
Q 010115 237 LPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIW--TRIKIRGFHPSPRAGCCGVL-CGTKWY 313 (518)
Q Consensus 237 ~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W--~~v~~~~~~p~~r~~~~~~~-~~~~iy 313 (518)
..+. .+.....-.+++...+..+++.|+.++ .+..||+.+.+- ..+.... .....-.+++. -+++++
T Consensus 197 ~~~~---~~~~~~~v~~~~~sp~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l 266 (377)
T 3dwl_C 197 TVCA---EYPSGGWVHAVGFSPSGNALAYAGHDS-----SVTIAYPSAPEQPPRALITVK--LSQLPLRSLLWANESAIV 266 (377)
T ss_dssp EEEE---CCCCSSSEEEEEECTTSSCEEEEETTT-----EEC-CEECSTTSCEEECCCEE--CSSSCEEEEEEEETTEEE
T ss_pred hhhh---cccCCceEEEEEECCCCCEEEEEeCCC-----cEEEEECCCCCCcceeeEeec--CCCCceEEEEEcCCCCEE
Confidence 2222 121111122333333333666666543 477778766542 1111110 01111122222 377777
Q ss_pred EEcccCCCCCcCeEEEEECCCCceEEee
Q 010115 314 IAGGGSRKKRHAETLIFDILKGEWSVAI 341 (518)
Q Consensus 314 v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 341 (518)
+.|+. +.+.+|+.....|....
T Consensus 267 ~~~~~------~~~~~~~~~~~~~~~~~ 288 (377)
T 3dwl_C 267 AAGYN------YSPILLQGNESGWAHTR 288 (377)
T ss_dssp EEESS------SSEEEECCCC---CCSB
T ss_pred EEEcC------CcEEEEEeCCCceEEEe
Confidence 66642 22567777766665543
No 108
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=95.33 E-value=2 Score=40.64 Aligned_cols=233 Identities=9% Similarity=0.041 Sum_probs=111.0
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCCCceeEEE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWT 177 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 177 (518)
++.+++.|+.+ ..+.++|..+..-...-.. ...+ ........+++.++.|+.+. .+..
T Consensus 24 ~~~~l~s~~~d-----g~v~lWd~~~~~~~~~~~~----------~~~~-v~~~~~~~~~~~l~s~s~d~------~i~v 81 (304)
T 2ynn_A 24 TEPWVLTTLYS-----GRVELWNYETQVEVRSIQV----------TETP-VRAGKFIARKNWIIVGSDDF------RIRV 81 (304)
T ss_dssp SSSEEEEEETT-----SEEEEEETTTTEEEEEEEC----------CSSC-EEEEEEEGGGTEEEEEETTS------EEEE
T ss_pred CCCEEEEEcCC-----CcEEEEECCCCceeEEeec----------cCCc-EEEEEEeCCCCEEEEECCCC------EEEE
Confidence 45566667654 4588889887653322110 0001 11112222556666776543 5888
Q ss_pred EECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEE
Q 010115 178 FDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAAL 256 (518)
Q Consensus 178 yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~ 256 (518)
||..+.+-...-. .....-.+++. -++.+++.|+.+. .+.++|+.+..=......+ ....-.+++.
T Consensus 82 wd~~~~~~~~~~~----~h~~~v~~~~~~~~~~~l~sgs~D~------~v~lWd~~~~~~~~~~~~~---h~~~v~~v~~ 148 (304)
T 2ynn_A 82 FNYNTGEKVVDFE----AHPDYIRSIAVHPTKPYVLSGSDDL------TVKLWNWENNWALEQTFEG---HEHFVMCVAF 148 (304)
T ss_dssp EETTTCCEEEEEE----CCSSCEEEEEECSSSSEEEEEETTS------CEEEEEGGGTTEEEEEECC---CCSCEEEEEE
T ss_pred EECCCCcEEEEEe----CCCCcEEEEEEcCCCCEEEEECCCC------eEEEEECCCCcchhhhhcc---cCCcEEEEEE
Confidence 8988876332211 01111122333 2456667777654 3778888765211111111 1111122333
Q ss_pred EC-CcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE---CCEEEEEcccCCCCCcCeEEEEEC
Q 010115 257 YD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC---GTKWYIAGGGSRKKRHAETLIFDI 332 (518)
Q Consensus 257 ~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~ 332 (518)
.. +..+++.|+.++ .+..||+.+..=...... ...+........ ++.+++.|+.++ .+.++|+
T Consensus 149 ~p~~~~~l~sgs~D~-----~v~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~s~s~D~-----~i~iWd~ 215 (304)
T 2ynn_A 149 NPKDPSTFASGCLDR-----TVKVWSLGQSTPNFTLTT---GQERGVNYVDYYPLPDKPYMITASDDL-----TIKIWDY 215 (304)
T ss_dssp CTTCTTEEEEEETTS-----EEEEEETTCSSCSEEEEC---CCTTCEEEEEECCSTTCCEEEEEETTS-----EEEEEET
T ss_pred CCCCCCEEEEEeCCC-----eEEEEECCCCCccceecc---CCcCcEEEEEEEEcCCCCEEEEEcCCC-----eEEEEeC
Confidence 32 322677777654 488888754321111111 111111111111 445667776543 4889998
Q ss_pred CCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 333 LKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 333 ~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
.+.+-...... -......+.+.. + ..+++.|+.++ .+.++|+.+.+
T Consensus 216 ~~~~~~~~~~~------h~~~v~~~~~~p-~-~~~l~s~s~Dg----~i~iWd~~~~~ 261 (304)
T 2ynn_A 216 QTKSCVATLEG------HMSNVSFAVFHP-T-LPIIISGSEDG----TLKIWNSSTYK 261 (304)
T ss_dssp TTTEEEEEEEC------CSSCEEEEEECS-S-SSEEEEEETTS----CEEEEETTTCC
T ss_pred CCCccceeeCC------CCCCEEEEEECC-C-CCEEEEEcCCC----eEEEEECCCCc
Confidence 87654332211 011223333432 2 33667777654 57888877654
No 109
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=95.29 E-value=4 Score=43.97 Aligned_cols=131 Identities=13% Similarity=0.086 Sum_probs=73.2
Q ss_pred eEEEEECCEEEEEcCcCCCCCCCcEEEEEcCCC--cEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCC
Q 010115 92 HAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG 169 (518)
Q Consensus 92 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~ 169 (518)
.+-++.++.||+... .+.++.+|..+. .|+.-......... .........+.++.+++||+....
T Consensus 64 ~~P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~v~v~~~d---- 130 (689)
T 1yiq_A 64 ATPIVVDGVMYTTGP------FSVVYALDARDGRLIWKYDPQSDRHRAG---EACCDAVNRGVAVWKGKVYVGVLD---- 130 (689)
T ss_dssp CCCEEETTEEEEECG------GGCEEEEETTTCCEEEEECCCCCGGGGG---GCTTCSCCCCCEEETTEEEEECTT----
T ss_pred ecCEEECCEEEEEcC------CCeEEEEECCCCceeEEEcCCCCccccc---cccccCCCCccEEECCEEEEEccC----
Confidence 344567999999765 246899998765 69865431100000 000000122345678898886421
Q ss_pred CCceeEEEEECCCCc--EEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCc--EEEe
Q 010115 170 SDRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPL 239 (518)
Q Consensus 170 ~~~~~v~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~ 239 (518)
..++.+|.+|++ |+...............+-++.++.+|+-.+.... ..-..++.||.++.+ |+.-
T Consensus 131 ---g~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~-~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 131 ---GRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEF-GVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp ---SEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTT-CCBCEEEEEETTTCCEEEEEE
T ss_pred ---CEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCcc-CCCCEEEEEECCCCcEEEEec
Confidence 268999999876 88654201001112222335578888874332111 124579999998865 8764
No 110
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=95.28 E-value=2.3 Score=41.11 Aligned_cols=80 Identities=10% Similarity=0.089 Sum_probs=41.2
Q ss_pred EEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE--CC-EEEEEcccCCCCCcCeEEE
Q 010115 254 AALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GT-KWYIAGGGSRKKRHAETLI 329 (518)
Q Consensus 254 ~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~ 329 (518)
++.. +++.+|+.+.. .+.+.+||+.+.+++.+......+........+.+ ++ .||+..... .+.+.+
T Consensus 216 ~~~spdg~~l~v~~~~-----~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~----~~~i~v 286 (361)
T 3scy_A 216 LIFNSDGKFAYLINEI-----GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK----ADGVAI 286 (361)
T ss_dssp EEECTTSSEEEEEETT-----TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS----SCEEEE
T ss_pred EEEcCCCCEEEEEcCC-----CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC----CCEEEE
Confidence 3443 34556766532 24688999888877665543222222222233333 44 466654320 134666
Q ss_pred EEC--CCCceEEeec
Q 010115 330 FDI--LKGEWSVAIT 342 (518)
Q Consensus 330 yd~--~~~~W~~~~~ 342 (518)
|++ .+++++.+..
T Consensus 287 ~~~~~~~g~~~~~~~ 301 (361)
T 3scy_A 287 FKVDETNGTLTKVGY 301 (361)
T ss_dssp EEECTTTCCEEEEEE
T ss_pred EEEcCCCCcEEEeeE
Confidence 665 5677776654
No 111
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=95.25 E-value=2.4 Score=41.22 Aligned_cols=208 Identities=12% Similarity=0.039 Sum_probs=97.9
Q ss_pred ceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCC
Q 010115 172 RVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 250 (518)
Q Consensus 172 ~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~ 250 (518)
...++.+|+.+.+-+.+... .....+....- +++.+++............++.+|+.+.....+. .......
T Consensus 167 ~~~l~~~d~~~g~~~~l~~~----~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~---~~~~~~~ 239 (388)
T 3pe7_A 167 CCRLMRVDLKTGESTVILQE----NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVK---THAEGES 239 (388)
T ss_dssp CEEEEEEETTTCCEEEEEEE----SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESC---CCCTTEE
T ss_pred cceEEEEECCCCceEEeecC----CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEee---eCCCCcc
Confidence 35799999999887666531 12223333333 4554444333222223468999999877766664 2111111
Q ss_pred CcEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCC---CCCcceEEEEECCEEEEEc----ccCCCC
Q 010115 251 NHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHP---SPRAGCCGVLCGTKWYIAG----GGSRKK 322 (518)
Q Consensus 251 ~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p---~~r~~~~~~~~~~~iyv~G----G~~~~~ 322 (518)
....+.. +++.|+......+ .....++.+|+++.+-+.+....... ....+......+..|++.. |.. ..
T Consensus 240 ~~~~~~spdg~~l~~~~~~~~-~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~-~~ 317 (388)
T 3pe7_A 240 CTHEFWVPDGSALVYVSYLKG-SPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYK-IE 317 (388)
T ss_dssp EEEEEECTTSSCEEEEEEETT-CCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-------------C
T ss_pred cccceECCCCCEEEEEecCCC-CCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccc-cC
Confidence 1122232 4443433322111 11124999999988877665431100 0000011111233333321 111 11
Q ss_pred CcCeEEEEECCCCceEEeecCCCCCCC----CCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCCc
Q 010115 323 RHAETLIFDILKGEWSVAITSPSSSVT----SNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 391 (518)
Q Consensus 323 ~~~~v~~yd~~~~~W~~~~~~~~~~~~----~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~w 391 (518)
....++++|+.+++-+.+......... .........+.. +...|+......+ ...+|.+++...+|
T Consensus 318 ~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sp-Dg~~l~~~s~~~g--~~~l~~~~l~~~~~ 387 (388)
T 3pe7_A 318 NDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTP-DDKQILFTSDVHG--KPALYLATLPESVW 387 (388)
T ss_dssp CCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECT-TSSEEEEEECTTS--SCEEEEEECCGGGG
T ss_pred CCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCC-CCCEEEEEecCCC--ceeEEEEECChhcc
Confidence 235799999999888777643221000 000112223332 3345554444333 34799998887665
No 112
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=95.24 E-value=0.71 Score=45.05 Aligned_cols=195 Identities=12% Similarity=0.053 Sum_probs=91.6
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCC
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~ 234 (518)
.+..++.|+.++ .|..||+.+++-..............-.+++. -+++.++.|+.+. .+.++|+.+.
T Consensus 92 ~d~~l~~~s~dg------~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~------~i~iwd~~~~ 159 (344)
T 4gqb_B 92 GERGILVASDSG------AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDI------CIKVWDLAQQ 159 (344)
T ss_dssp TTTEEEEEETTS------EEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTT
T ss_pred CCCeEEEEECCC------EEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCC------eEEEEECCCC
Confidence 444455665533 57778887765221110000000111122222 2567777777654 3788999877
Q ss_pred cEEEeecCCCCCCCCCCcEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE---CC
Q 010115 235 TWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC---GT 310 (518)
Q Consensus 235 ~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~---~~ 310 (518)
+-...- ...... -.+++.. ++..+++.|+.++ .|..||+.+.+-...-.. ........++.+ ++
T Consensus 160 ~~~~~~---~~h~~~-V~~~~~~~~~~~~l~s~s~D~-----~v~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~ 227 (344)
T 4gqb_B 160 VVLSSY---RAHAAQ-VTCVAASPHKDSVFLSCSEDN-----RILLWDTRCPKPASQIGC---SAPGYLPTSLAWHPQQS 227 (344)
T ss_dssp EEEEEE---CCCSSC-EEEEEECSSCTTEEEEEETTS-----CEEEEETTSSSCEEECC-------CCCEEEEEECSSCT
T ss_pred cEEEEE---cCcCCc-eEEEEecCCCCCceeeecccc-----ccccccccccceeeeeec---ceeeccceeeeecCCCC
Confidence 543322 111111 1122222 2333677777654 488899877653322111 111111122222 45
Q ss_pred EEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 311 KWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 311 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
++++.|+.++ .+.+||+.+.+-..... . -......+.+.. +...+++.|+.++ .|.+||..+.+
T Consensus 228 ~~l~sg~~dg-----~v~~wd~~~~~~~~~~~--~----h~~~v~~v~fsp-~g~~~lasgs~D~----~i~vwd~~~~~ 291 (344)
T 4gqb_B 228 EVFVFGDENG-----TVSLVDTKSTSCVLSSA--V----HSQCVTGLVFSP-HSVPFLASLSEDC----SLAVLDSSLSE 291 (344)
T ss_dssp TEEEEEETTS-----EEEEEESCC--CCEEEE--C----CSSCEEEEEECS-SSSCCEEEEETTS----CEEEECTTCCE
T ss_pred cceEEeccCC-----cEEEEECCCCcEEEEEc--C----CCCCEEEEEEcc-CCCeEEEEEeCCC----eEEEEECCCCc
Confidence 6888887653 48889987654322111 0 011123333332 2234666777654 47777776554
No 113
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=95.23 E-value=3.1 Score=42.36 Aligned_cols=189 Identities=16% Similarity=0.190 Sum_probs=99.3
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCc
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 235 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 235 (518)
++++|+|-|. ..|+||..+++.....- ..+| . --++....+++|+|-|. ..|+||..+.+
T Consensus 158 ~~~~yfFkG~--------~yw~yd~~~~~~~~~~w-~gi~--~-iDAA~~~~g~~YfFkG~--------~y~rfd~~~~~ 217 (460)
T 1qhu_A 158 DEGILFFQGN--------RKWFWDLTTGTKKERSW-PAVG--N-CTSALRWLGRYYCFQGN--------QFLRFNPVSGE 217 (460)
T ss_dssp SSEEEEEETT--------EEEEEETTTTEEEEECC-TTSC--C-CSEEEEETTEEEEEETT--------EEEEECTTTCC
T ss_pred CCeEEEEecc--------cEEEEecccceeecccC-CCCC--c-cchheeeCCceEEEECC--------EEEEEcCccCc
Confidence 6788998774 58999999887653221 1233 2 24555567999999663 46677765432
Q ss_pred ------------EEEeecCC------------CCC---C-CCCCcEEEE-ECCcEEEEEcCCCCCCCCCcEEEEEcCCCe
Q 010115 236 ------------WLPLHCTG------------TGP---S-PRSNHVAAL-YDDKNLLIFGGSSKSKTLNDLYSLDFETMI 286 (518)
Q Consensus 236 ------------W~~~~~~g------------~~p---~-~r~~~~~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 286 (518)
|..++..| ..| . ....-++.. .+++ +|+|-|. ..|++|.....
T Consensus 218 v~~gyPk~is~~w~~c~~~g~~~~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~-tYFFKg~-------~yWR~~~~~~~ 289 (460)
T 1qhu_A 218 VPPGYPLDVRDYFLSCPGRGHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGA-TYVFSGS-------HYWRLDTNRDG 289 (460)
T ss_dssp CCTTCCEEHHHHTSCCTTCCSCC-------CCCTTTTTCTTCCCCEEEECTTCC-EEEEETT-------EEEECTTGGGC
T ss_pred ccCCCCcchhhcccCCCCCCCccccccCCccccccccccCCCCcCEEEecCCCe-EEEEeCC-------EEEEEecCCCC
Confidence 21111000 000 1 111223333 3456 8888763 57777765433
Q ss_pred EEEeec---CCCCCCCCcceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCC------CCCC--CCCce
Q 010115 287 WTRIKI---RGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSS------SVTS--NKGFT 355 (518)
Q Consensus 287 W~~v~~---~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~------~~~~--r~~~s 355 (518)
+..... -+..|. .--++...++++|+|=| +.+|+|+..+. .+.+.-.|.. .+.. ...--
T Consensus 290 ~~p~~Is~~WpglP~--~IDAAf~~~~~~yfFkG-------~~yw~f~~~~g-~~~~~GyPK~I~~~lGlp~~~~~~~ID 359 (460)
T 1qhu_A 290 WHSWPIAHQWPQGPS--TVDAAFSWEDKLYLIQD-------TKVYVFLTKGG-YTLVNGYPKRLEKELGSPPVISLEAVD 359 (460)
T ss_dssp CCCEEGGGTCTTSCS--SCSEEEEETTEEEEEET-------TEEEEEECSBS-CEECTTCCEEHHHHHCCCSSCCCSCCC
T ss_pred cCccchhhhccCCCC--CCcEEEEECCeEEEEeC-------CEEEEEeCCCC-ceecCCCCeEHHHhccCCCccccCccc
Confidence 321111 111232 23455556899999976 45888886531 2222111110 0111 11223
Q ss_pred EEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccC
Q 010115 356 LVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (518)
Q Consensus 356 ~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~ 389 (518)
++.. ..+.+++|+|-|. ..|.||....
T Consensus 360 AA~~-~~~~~ktyfFkG~------~ywryd~~~~ 386 (460)
T 1qhu_A 360 AAFV-CPGSSRLHIMAGR------RLWWLDLKSG 386 (460)
T ss_dssp EEEC-CTTCCEEEEEETT------EEEEEEGGGG
T ss_pred EEEE-eCCCCEEEEEECC------EEEEEECCCC
Confidence 3332 2245678888885 7899998743
No 114
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=95.23 E-value=0.36 Score=52.75 Aligned_cols=195 Identities=12% Similarity=0.112 Sum_probs=100.5
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcc-eEEEE-EC--CEEEEEcccCCCCcccCcEEEEEc
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSG-HTVVR-AS--SVLILFGGEDGKRRKLNDLHMFDL 231 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~-~~~~~-~~--~~iyv~GG~~~~~~~~~~~~~yd~ 231 (518)
++..++.||.++ .+..||..+.++..+.. +...... .++.. .+ +.+++.|+.++ .+.+||+
T Consensus 20 dg~~latg~~dg------~I~vwd~~~~~~~~~~~---l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg------~I~vwd~ 84 (753)
T 3jro_A 20 YGKRLATCSSDK------TIKIFEVEGETHKLIDT---LTGHEGPVWRVDWAHPKFGTILASCSYDG------KVLIWKE 84 (753)
T ss_dssp SSCCEEEEETTT------EEEEEEEETTEEEEEEE---ECCCSSCEEEEEECCTTSCSEEEEEETTS------CEEEEEE
T ss_pred CCCeEEEEECCC------cEEEEecCCCCCcccee---ccCCcCceEEEEecCCCCCCEEEEEeCCC------eEEEEEC
Confidence 456666776543 57788887777776654 2222222 22222 22 66777777654 3888999
Q ss_pred CCCcEEEeecCCCCCCCCCCcEEEEEC---CcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE
Q 010115 232 KSLTWLPLHCTGTGPSPRSNHVAALYD---DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC 308 (518)
Q Consensus 232 ~t~~W~~~~~~g~~p~~r~~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~ 308 (518)
.+.+|..+... ......-.+++... +. +++.|+.++ .+..||+.+..-.........+. ...++...
T Consensus 85 ~~~~~~~~~~~--~~h~~~V~~v~~sp~~~~~-~l~sgs~dg-----~I~vwdl~~~~~~~~~~~~~~~~--~v~~l~~~ 154 (753)
T 3jro_A 85 ENGRWSQIAVH--AVHSASVNSVQWAPHEYGP-LLLVASSDG-----KVSVVEFKENGTTSPIIIDAHAI--GVNSASWA 154 (753)
T ss_dssp ETTEEEEEEEE--CCCSSCEEEEEECCGGGCS-EEEEEETTS-----EEEEEECCSSSCCCCEEEECCSS--CEEEEEEC
T ss_pred CCCcccccccc--cCCCCCeEEEEECCCCCCC-EEEEEeCCC-----cEEEEEeecCCCcceeEeecCCC--ceEEEEec
Confidence 99988776521 11111222333333 45 677776654 58888886652111110000011 11112221
Q ss_pred --------------CCEEEEEcccCCCCCcCeEEEEECCCC--ceEEeecCCCCCCCCCCCceEEEEeeCCc--cEEEEE
Q 010115 309 --------------GTKWYIAGGGSRKKRHAETLIFDILKG--EWSVAITSPSSSVTSNKGFTLVLVQHKEK--DFLVAF 370 (518)
Q Consensus 309 --------------~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~r~~~s~~~~~~~~~--~~l~v~ 370 (518)
++.+++.|+.++. +.+||+.+. .+..+..... .......+.+.. +. +.+++.
T Consensus 155 p~~~~~~~~~~~~~d~~~l~sgs~dg~-----I~iwd~~~~~~~~~~~~~~~~----h~~~V~~l~~sp-~~~~~~~l~s 224 (753)
T 3jro_A 155 PATIEEDGEHNGTKESRKFVTGGADNL-----VKIWKYNSDAQTYVLESTLEG----HSDWVRDVAWSP-TVLLRSYLAS 224 (753)
T ss_dssp CCC---------CGGGCCEEEEETTSC-----EEEEEEETTTTEEEEEEEECC----CSSCEEEEEECC-CCSSSEEEEE
T ss_pred CcccccccccccCCCCCEEEEEECCCe-----EEEEeccCCcccceeeeeecC----CCCcEEEEEecc-CCCCCCEEEE
Confidence 2567777776543 777776554 3444332111 111223333332 21 457777
Q ss_pred cCCCCCCCCcEEEEEcccC
Q 010115 371 GGIKKEPSNQVEVLSIEKN 389 (518)
Q Consensus 371 GG~~~~~~~~v~~yd~~~~ 389 (518)
||.++ .+.+||+.+.
T Consensus 225 ~s~Dg----~I~iwd~~~~ 239 (753)
T 3jro_A 225 VSQDR----TCIIWTQDNE 239 (753)
T ss_dssp EESSS----CEEEEEESSS
T ss_pred EecCC----EEEEecCCCC
Confidence 77654 5888888775
No 115
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=95.22 E-value=1.9 Score=39.96 Aligned_cols=190 Identities=6% Similarity=-0.063 Sum_probs=100.4
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCceeEE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~ 176 (518)
++.+|+.... ...+++||+. .++..... +.....-++++.. ++.+|+..... ..++
T Consensus 72 ~g~l~v~~~~-----~~~v~~~d~~-g~~~~~~~-----------~~~~~~~~~i~~~~~g~l~v~~~~~------~~i~ 128 (300)
T 2qc5_A 72 LGDIWFTENG-----ANKIGKLSKK-GGFTEYPL-----------PQPDSGPYGITEGLNGDIWFTQLNG------DRIG 128 (300)
T ss_dssp TSCEEEEETT-----TTEEEEECTT-SCEEEEEC-----------SSTTCCEEEEEECSTTCEEEEETTT------TEEE
T ss_pred CCCEEEEecC-----CCeEEEECCC-CCeEEecC-----------CCCCCCCccceECCCCCEEEEccCC------CeEE
Confidence 4668886532 2458899988 66654432 1111223444444 57888875322 2588
Q ss_pred EEECCCCcEEEeeecCCCCC-CCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEE
Q 010115 177 TFDTETECWSVVEAKGDIPV-ARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (518)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~-~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~ 254 (518)
+||+. .+..... ++. ...-+.++. -++++|+.... ...+++||+ +.+........... .-..+
T Consensus 129 ~~~~~-g~~~~~~----~~~~~~~~~~i~~d~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~~~~~~~---~~~~i 193 (300)
T 2qc5_A 129 KLTAD-GTIYEYD----LPNKGSYPAFITLGSDNALWFTENQ------NNSIGRITN-TGKLEEYPLPTNAA---APVGI 193 (300)
T ss_dssp EECTT-SCEEEEE----CSSTTCCEEEEEECTTSSEEEEETT------TTEEEEECT-TCCEEEEECSSTTC---CEEEE
T ss_pred EECCC-CCEEEcc----CCCCCCCceeEEECCCCCEEEEecC------CCeEEEECC-CCcEEEeeCCCCCC---CcceE
Confidence 99988 6665443 221 122233343 24678876421 245899998 66776654211111 11233
Q ss_pred EEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCCCcCeEEEEECC
Q 010115 255 ALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDIL 333 (518)
Q Consensus 255 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~ 333 (518)
+...+..+|+.... .+.+++||+ +.++....... ....-.+.+.. +++||+.... .+.+.+||+
T Consensus 194 ~~d~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~~~~---~~~~~~~i~~d~~g~l~v~~~~-----~~~i~~~~~- 258 (300)
T 2qc5_A 194 TSGNDGALWFVEIM-----GNKIGRITT-TGEISEYDIPT---PNARPHAITAGKNSEIWFTEWG-----ANQIGRITN- 258 (300)
T ss_dssp EECTTSSEEEEETT-----TTEEEEECT-TCCEEEEECSS---TTCCEEEEEECSTTCEEEEETT-----TTEEEEECT-
T ss_pred EECCCCCEEEEccC-----CCEEEEEcC-CCcEEEEECCC---CCCCceEEEECCCCCEEEeccC-----CCeEEEECC-
Confidence 33333337776422 235999998 55666553221 11111233332 5678887532 245889998
Q ss_pred CCceEEe
Q 010115 334 KGEWSVA 340 (518)
Q Consensus 334 ~~~W~~~ 340 (518)
+.+....
T Consensus 259 ~g~~~~~ 265 (300)
T 2qc5_A 259 DNTIQEY 265 (300)
T ss_dssp TSCEEEE
T ss_pred CCcEEEE
Confidence 4566554
No 116
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=95.16 E-value=0.8 Score=44.78 Aligned_cols=153 Identities=12% Similarity=0.101 Sum_probs=75.7
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCcccCcEEEEEcCC
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS 233 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t 233 (518)
++.+++.|+... .+..||..+.+-..... .+........... ++.+++.|+.++ .+.+||+.+
T Consensus 111 ~~~~l~s~~~d~------~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~d~~~ 175 (408)
T 4a11_B 111 DTGMFTSSSFDK------TLKVWDTNTLQTADVFN---FEETVYSHHMSPVSTKHCLVAVGTRGP------KVQLCDLKS 175 (408)
T ss_dssp CTTCEEEEETTS------EEEEEETTTTEEEEEEE---CSSCEEEEEECSSCSSCCEEEEEESSS------SEEEEESSS
T ss_pred CCcEEEEEeCCC------eEEEeeCCCCccceecc---CCCceeeeEeecCCCCCcEEEEEcCCC------eEEEEeCCC
Confidence 445677776543 68889998877554433 2222111111111 344677776543 488899876
Q ss_pred CcEEEeecCCCCCCCCCCcEEEEECC-cEEEEEcCCCCCCCCCcEEEEEcCCCe--EEEeecCC-----CC----CCCCc
Q 010115 234 LTWLPLHCTGTGPSPRSNHVAALYDD-KNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRG-----FH----PSPRA 301 (518)
Q Consensus 234 ~~W~~~~~~g~~p~~r~~~~~~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~v~~~~-----~~----p~~r~ 301 (518)
.+-...- ... ...-.+++...+ ..+++.|+.++ .+..||+.+.. ...+.... .. .....
T Consensus 176 ~~~~~~~---~~~-~~~v~~~~~~~~~~~ll~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (408)
T 4a11_B 176 GSCSHIL---QGH-RQEILAVSWSPRYDYILATASADS-----RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNG 246 (408)
T ss_dssp SCCCEEE---CCC-CSCEEEEEECSSCTTEEEEEETTS-----CEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSS
T ss_pred cceeeee---cCC-CCcEEEEEECCCCCcEEEEEcCCC-----cEEEEECCCCCcccccccccccccceeeccccccccC
Confidence 5432221 111 111122333333 32566776554 48888886542 22221100 00 01111
Q ss_pred ceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCCCce
Q 010115 302 GCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEW 337 (518)
Q Consensus 302 ~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 337 (518)
....+.+ +++.++.|+.++. +.+||+.+..-
T Consensus 247 ~v~~~~~~~~~~~l~~~~~dg~-----i~vwd~~~~~~ 279 (408)
T 4a11_B 247 KVNGLCFTSDGLHLLTVGTDNR-----MRLWNSSNGEN 279 (408)
T ss_dssp CEEEEEECTTSSEEEEEETTSC-----EEEEETTTCCB
T ss_pred ceeEEEEcCCCCEEEEecCCCe-----EEEEECCCCcc
Confidence 1122223 5667777776543 88999887654
No 117
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=95.16 E-value=0.65 Score=48.63 Aligned_cols=193 Identities=11% Similarity=0.106 Sum_probs=95.7
Q ss_pred eEEEEECCCCcEEEeeecCCC--------CCCCcceEEEEE-CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCC
Q 010115 174 SVWTFDTETECWSVVEAKGDI--------PVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGT 244 (518)
Q Consensus 174 ~v~~yd~~t~~W~~~~~~~~~--------p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~ 244 (518)
.+..+|..+.+-...-+...+ |.+|..+..... +..+|+.... .+.++++|..+.+-..+. .
T Consensus 249 ~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~------~g~i~vvd~~~~~~l~~~---~ 319 (543)
T 1nir_A 249 QFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE------TGKVLLVNYKDIDNLTVT---S 319 (543)
T ss_dssp EEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT------TTEEEEEECTTSSSCEEE---E
T ss_pred eEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC------CCeEEEEEecCCCcceeE---E
Confidence 577889888764333221101 222332222222 3455554322 356899998764321111 1
Q ss_pred CCCCCCCcEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEcccCCC
Q 010115 245 GPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRK 321 (518)
Q Consensus 245 ~p~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~ 321 (518)
.+..+.-+..+.. +++.+|+.+.. .+.|.++|.++++-...-..+..|.+-.+.. ... ++.+|+.+....
T Consensus 320 i~~~~~~~~~~~spdg~~l~va~~~-----~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~-~~~p~~g~~~~s~~~~d- 392 (543)
T 1nir_A 320 IGAAPFLHDGGWDSSHRYFMTAANN-----SNKVAVIDSKDRRLSALVDVGKTPHPGRGAN-FVHPKYGPVWSTSHLGD- 392 (543)
T ss_dssp EECCSSCCCEEECTTSCEEEEEEGG-----GTEEEEEETTTTEEEEEEECSSSBCCTTCEE-EEETTTEEEEEEEBSSS-
T ss_pred eccCcCccCceECCCCCEEEEEecC-----CCeEEEEECCCCeEEEeeccCCCCCCCCCcc-cCCCCCccEEEeccCCC-
Confidence 1123333344444 34445554322 2468899999887555433333333322222 223 367888764332
Q ss_pred CCcCeEEEEECCCC-----ceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCC--CCCcEEEEEcccCC
Q 010115 322 KRHAETLIFDILKG-----EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE--PSNQVEVLSIEKNE 390 (518)
Q Consensus 322 ~~~~~v~~yd~~~~-----~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~--~~~~v~~yd~~~~~ 390 (518)
+.|-++|.++. .|+.+...+... ..... +. .+++...||+-.-.+.+ ..+.|.+||+.+.+
T Consensus 393 ---~~V~v~d~~~~~~~~~~~~~v~~l~~~g---~~~~~-v~-~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 393 ---GSISLIGTDPKNHPQYAWKKVAELQGQG---GGSLF-IK-THPKSSHLYVDTTFNPDARISQSVAVFDLKNLD 460 (543)
T ss_dssp ---SEEEEEECCTTTCTTTBTSEEEEEECSC---SCCCC-EE-CCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred ---ceEEEEEeCCCCCchhcCeEEEEEEcCC---CCceE-EE-cCCCCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence 34788888762 377765433211 11112 22 24455667654311211 25689999998876
No 118
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=95.15 E-value=2.3 Score=40.37 Aligned_cols=185 Identities=9% Similarity=-0.010 Sum_probs=88.2
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCc----EEEcccccccCCCCCCCCCCCccceEEEE-ECCE-EEEEcCcCCCCCC
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFS----WTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKK-VLLVGGKTDSGSD 171 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~----W~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~-iyv~GG~~~~~~~ 171 (518)
++.+++.|+.+ ..+.+||..+.. -..... ... .-.+++. -++. .++.|+.+.
T Consensus 22 ~~~~l~~~~~d-----~~v~iw~~~~~~~~~~~~~~~~------------~~~-~v~~~~~~~~~~~~l~~~~~dg---- 79 (342)
T 1yfq_A 22 SKSLLLITSWD-----GSLTVYKFDIQAKNVDLLQSLR------------YKH-PLLCCNFIDNTDLQIYVGTVQG---- 79 (342)
T ss_dssp GGTEEEEEETT-----SEEEEEEEETTTTEEEEEEEEE------------CSS-CEEEEEEEESSSEEEEEEETTS----
T ss_pred CCCEEEEEcCC-----CeEEEEEeCCCCccccceeeee------------cCC-ceEEEEECCCCCcEEEEEcCCC----
Confidence 44555666543 457888887665 222221 001 1122222 2566 677777543
Q ss_pred ceeEEEEEC-CCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCc-------EEEeecCC
Q 010115 172 RVSVWTFDT-ETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT-------WLPLHCTG 243 (518)
Q Consensus 172 ~~~v~~yd~-~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-------W~~~~~~g 243 (518)
.+..||+ .+.+...+.. .+....-.++....+.+++.|+.+. .+.+||+.+.. .+.+.
T Consensus 80 --~i~~wd~~~~~~~~~~~~---~~~~~~v~~l~~~~~~~l~s~~~d~------~i~iwd~~~~~~~~~~~~~~~~~--- 145 (342)
T 1yfq_A 80 --EILKVDLIGSPSFQALTN---NEANLGICRICKYGDDKLIAASWDG------LIEVIDPRNYGDGVIAVKNLNSN--- 145 (342)
T ss_dssp --CEEEECSSSSSSEEECBS---CCCCSCEEEEEEETTTEEEEEETTS------EEEEECHHHHTTBCEEEEESCSS---
T ss_pred --eEEEEEeccCCceEeccc---cCCCCceEEEEeCCCCEEEEEcCCC------eEEEEcccccccccccccCCeee---
Confidence 5889999 8877654432 1111222233333355666666543 47778775300 21221
Q ss_pred CCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCC-Ce--EEEeecCCCCCCCCcceEEEEE--CCEEEEEccc
Q 010115 244 TGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET-MI--WTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGG 318 (518)
Q Consensus 244 ~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~-~~--W~~v~~~~~~p~~r~~~~~~~~--~~~iyv~GG~ 318 (518)
.......-.+++...+. ++.|+.+ ..+..||+.+ .. ....... ....-.+++.. ++++++.|+.
T Consensus 146 ~~~~~~~v~~~~~~~~~--l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~----~~~~i~~i~~~~~~~~~l~~~~~ 214 (342)
T 1yfq_A 146 NTKVKNKIFTMDTNSSR--LIVGMNN-----SQVQWFRLPLCEDDNGTIEESG----LKYQIRDVALLPKEQEGYACSSI 214 (342)
T ss_dssp SSSSCCCEEEEEECSSE--EEEEEST-----TEEEEEESSCCTTCCCEEEECS----CSSCEEEEEECSGGGCEEEEEET
T ss_pred EEeeCCceEEEEecCCc--EEEEeCC-----CeEEEEECCccccccceeeecC----CCCceeEEEECCCCCCEEEEEec
Confidence 22222222233333343 4555443 3589999877 33 3222221 11112233333 4677777775
Q ss_pred CCCCCcCeEEEEECCC
Q 010115 319 SRKKRHAETLIFDILK 334 (518)
Q Consensus 319 ~~~~~~~~v~~yd~~~ 334 (518)
++ .+.++|...
T Consensus 215 dg-----~i~i~~~~~ 225 (342)
T 1yfq_A 215 DG-----RVAVEFFDD 225 (342)
T ss_dssp TS-----EEEEEECCT
T ss_pred CC-----cEEEEEEcC
Confidence 43 355555543
No 119
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=95.11 E-value=2.1 Score=39.85 Aligned_cols=147 Identities=17% Similarity=0.107 Sum_probs=75.1
Q ss_pred CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCe
Q 010115 207 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI 286 (518)
Q Consensus 207 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 286 (518)
++..++.|+.++ .+..||... .-..+ ..+....-.+++...+.. ++.|+.++ .+..||+.+.+
T Consensus 154 ~~~~l~~~~~d~------~i~i~d~~~-~~~~~----~~~~~~~i~~~~~~~~~~-~~~~~~dg-----~i~i~d~~~~~ 216 (313)
T 3odt_A 154 SENKFLTASADK------TIKLWQNDK-VIKTF----SGIHNDVVRHLAVVDDGH-FISCSNDG-----LIKLVDMHTGD 216 (313)
T ss_dssp TTTEEEEEETTS------CEEEEETTE-EEEEE----CSSCSSCEEEEEEEETTE-EEEEETTS-----EEEEEETTTCC
T ss_pred CCCEEEEEECCC------CEEEEecCc-eEEEE----eccCcccEEEEEEcCCCe-EEEccCCC-----eEEEEECCchh
Confidence 566667776553 377788322 12222 121222233445555664 56665543 58999987654
Q ss_pred EEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCcc
Q 010115 287 WTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKD 365 (518)
Q Consensus 287 W~~v~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~ 365 (518)
-...-.. ....-.+++.. ++ .++.|+.+ ..+.+||+.+.+.......+ ......+.+...+
T Consensus 217 ~~~~~~~----~~~~i~~~~~~~~~-~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~------~~~i~~~~~~~~~-- 278 (313)
T 3odt_A 217 VLRTYEG----HESFVYCIKLLPNG-DIVSCGED-----RTVRIWSKENGSLKQVITLP------AISIWSVDCMSNG-- 278 (313)
T ss_dssp EEEEEEC----CSSCEEEEEECTTS-CEEEEETT-----SEEEEECTTTCCEEEEEECS------SSCEEEEEECTTS--
T ss_pred hhhhhhc----CCceEEEEEEecCC-CEEEEecC-----CEEEEEECCCCceeEEEecc------CceEEEEEEccCC--
Confidence 3222111 11111223333 44 35566644 34899999887655443211 1122333343222
Q ss_pred EEEEEcCCCCCCCCcEEEEEcccCCccc
Q 010115 366 FLVAFGGIKKEPSNQVEVLSIEKNESSM 393 (518)
Q Consensus 366 ~l~v~GG~~~~~~~~v~~yd~~~~~w~~ 393 (518)
. ++.|+.++ .+.+||+.+.++..
T Consensus 279 ~-~~~~~~dg----~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 279 D-IIVGSSDN----LVRIFSQEKSRWAS 301 (313)
T ss_dssp C-EEEEETTS----CEEEEESCGGGCCC
T ss_pred C-EEEEeCCC----cEEEEeCCCCceee
Confidence 3 44566543 68999998877554
No 120
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=95.08 E-value=2.4 Score=45.35 Aligned_cols=154 Identities=8% Similarity=0.004 Sum_probs=79.1
Q ss_pred cCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCC-eEEEeecCCCCCC-C
Q 010115 223 LNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETM-IWTRIKIRGFHPS-P 299 (518)
Q Consensus 223 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~-~W~~v~~~~~~p~-~ 299 (518)
...++++|+.+.+-..+.. ..........++.. +++ .++++..+.......++.+|+.+. .+..+........ .
T Consensus 234 ~~~l~~~d~~~~~~~~~~~--~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~ 310 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQT--GEPKEKFLTNLSWSPDEN-ILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVE 310 (706)
T ss_dssp EEEEEEEETTTTEEEECCC--CSCTTCEEEEEEECTTSS-EEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCC
T ss_pred eeEEEEEECCCCceEeecc--CCCCceeEeeEEEECCCC-EEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeEC
Confidence 3579999998887666531 01111111223333 445 444444433333457999999988 7776653211000 0
Q ss_pred CcceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCc-eEEEEeeCCccEEEEEcCCCCC
Q 010115 300 RAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGF-TLVLVQHKEKDFLVAFGGIKKE 376 (518)
Q Consensus 300 r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~-s~~~~~~~~~~~l~v~GG~~~~ 376 (518)
.....+..- ++++++.+..++ ...+|.+|........+... .... ....+. ++...|++.+..++.
T Consensus 311 ~~~~~~~sp~~dg~~l~~~~~~g---~~~l~~~~~~~~~~~~l~~~-------~~~v~~~~~~s-pdg~~l~~~~~~~~~ 379 (706)
T 2z3z_A 311 PLHPLTFLPGSNNQFIWQSRRDG---WNHLYLYDTTGRLIRQVTKG-------EWEVTNFAGFD-PKGTRLYFESTEASP 379 (706)
T ss_dssp CCSCCEECTTCSSEEEEEECTTS---SCEEEEEETTSCEEEECCCS-------SSCEEEEEEEC-TTSSEEEEEESSSCT
T ss_pred ccCCceeecCCCCEEEEEEccCC---ccEEEEEECCCCEEEecCCC-------CeEEEeeeEEc-CCCCEEEEEecCCCC
Confidence 001112222 677665554332 36789999877777766421 1111 223343 334456655544332
Q ss_pred CCCcEEEEEcccCC
Q 010115 377 PSNQVEVLSIEKNE 390 (518)
Q Consensus 377 ~~~~v~~yd~~~~~ 390 (518)
....++.+|+.+.+
T Consensus 380 ~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 380 LERHFYCIDIKGGK 393 (706)
T ss_dssp TCBEEEEEETTCCC
T ss_pred ceEEEEEEEcCCCC
Confidence 24578888876654
No 121
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=95.07 E-value=2.6 Score=40.52 Aligned_cols=195 Identities=13% Similarity=-0.014 Sum_probs=97.8
Q ss_pred CEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEE-EECCEEEEEcCcCCCCCCceeEEE
Q 010115 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLI-SWGKKVLLVGGKTDSGSDRVSVWT 177 (518)
Q Consensus 99 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~v~~ 177 (518)
+.+|+++... ..+++||+.++....... +. .-.+++ .-++++|+... ..+++
T Consensus 61 ~~l~~~d~~~-----~~i~~~d~~~~~~~~~~~-------------~~-~v~~i~~~~dg~l~v~~~--------~gl~~ 113 (326)
T 2ghs_A 61 GTAWWFNILE-----RELHELHLASGRKTVHAL-------------PF-MGSALAKISDSKQLIASD--------DGLFL 113 (326)
T ss_dssp TEEEEEEGGG-----TEEEEEETTTTEEEEEEC-------------SS-CEEEEEEEETTEEEEEET--------TEEEE
T ss_pred CEEEEEECCC-----CEEEEEECCCCcEEEEEC-------------CC-cceEEEEeCCCeEEEEEC--------CCEEE
Confidence 6788876432 468999998876554432 11 112233 34678877541 24999
Q ss_pred EECCCCcEEEeeecC-CCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEE
Q 010115 178 FDTETECWSVVEAKG-DIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 255 (518)
Q Consensus 178 yd~~t~~W~~~~~~~-~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~ 255 (518)
||+.+++.+.+.... ..+..+.. .++. -++++|+.............++++| +.+.+.+.. ... .....+
T Consensus 114 ~d~~~g~~~~~~~~~~~~~~~~~~-~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~--~~~---~~~~i~ 185 (326)
T 2ghs_A 114 RDTATGVLTLHAELESDLPGNRSN-DGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA--DIS---IPNSIC 185 (326)
T ss_dssp EETTTCCEEEEECSSTTCTTEEEE-EEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE--EES---SEEEEE
T ss_pred EECCCCcEEEEeeCCCCCCCCCCC-CEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC--CCc---ccCCeE
Confidence 999999987765311 01111111 2222 2467776432111112245789998 466655431 111 111333
Q ss_pred EE-CCcEEEEEcCCCCCCCCCcEEEEEcC--CC-eEE---EeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCCCcCeE
Q 010115 256 LY-DDKNLLIFGGSSKSKTLNDLYSLDFE--TM-IWT---RIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAET 327 (518)
Q Consensus 256 ~~-~~~~lyv~GG~~~~~~~~~v~~yd~~--~~-~W~---~v~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v 327 (518)
.. +++.+|+.... .+.|++||.. +. ... .+.... .....-.+++.. ++.+|+..-.. ..+
T Consensus 186 ~s~dg~~lyv~~~~-----~~~I~~~d~~~~~Gl~~~~~~~~~~~~--~~~~~p~gi~~d~~G~lwva~~~~-----~~v 253 (326)
T 2ghs_A 186 FSPDGTTGYFVDTK-----VNRLMRVPLDARTGLPTGKAEVFIDST--GIKGGMDGSVCDAEGHIWNARWGE-----GAV 253 (326)
T ss_dssp ECTTSCEEEEEETT-----TCEEEEEEBCTTTCCBSSCCEEEEECT--TSSSEEEEEEECTTSCEEEEEETT-----TEE
T ss_pred EcCCCCEEEEEECC-----CCEEEEEEcccccCCcccCceEEEECC--CCCCCCCeeEECCCCCEEEEEeCC-----CEE
Confidence 33 34457776432 2479999975 43 211 111110 001111223332 56788764211 358
Q ss_pred EEEECCCCceEEe
Q 010115 328 LIFDILKGEWSVA 340 (518)
Q Consensus 328 ~~yd~~~~~W~~~ 340 (518)
.+||++...-..+
T Consensus 254 ~~~d~~g~~~~~i 266 (326)
T 2ghs_A 254 DRYDTDGNHIARY 266 (326)
T ss_dssp EEECTTCCEEEEE
T ss_pred EEECCCCCEEEEE
Confidence 9999965544444
No 122
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=95.04 E-value=1.2 Score=48.18 Aligned_cols=110 Identities=9% Similarity=-0.062 Sum_probs=55.6
Q ss_pred cEEEEEcCC-CcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCC-CCcc
Q 010115 225 DLHMFDLKS-LTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPS-PRAG 302 (518)
Q Consensus 225 ~~~~yd~~t-~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~-~r~~ 302 (518)
.++++|+.+ .+-..+... .........++.-+++ .++++..+......+++.+|+.+.+...+........ ....
T Consensus 264 ~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~pDg~-~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 340 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLG--KEQDIYLARVNWRDPQ-HLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHN 340 (741)
T ss_dssp EEEEECSSTTCCCEEECCC--SCSSEEEEEEEEEETT-EEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred EEEEEECCCCCceEEecCC--CCcceEEEEEEeCCCC-EEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence 788899887 765555311 0111111122224455 3444333222234579999999888776654211000 0111
Q ss_pred eEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEee
Q 010115 303 CCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAI 341 (518)
Q Consensus 303 ~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 341 (518)
..+..-++++++.+..++ ...+|.+|.... ...+.
T Consensus 341 ~~~~spdg~~~~~~~~~g---~~~l~~~~~~~~-~~~l~ 375 (741)
T 2ecf_A 341 SLRFLDDGSILWSSERTG---FQHLYRIDSKGK-AAALT 375 (741)
T ss_dssp CCEECTTSCEEEEECTTS---SCEEEEECSSSC-EEESC
T ss_pred ceEECCCCeEEEEecCCC---ccEEEEEcCCCC-eeeee
Confidence 112222667666654432 357889987766 55543
No 123
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=95.00 E-value=1.5 Score=48.00 Aligned_cols=192 Identities=8% Similarity=-0.016 Sum_probs=106.5
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCceeEE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~ 176 (518)
++.||+-.. +.+++||+.+.+|........ ...+...-.+++.. ++.|++..-.. -++
T Consensus 460 ~g~lwigt~-------~Gl~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~i~~d~~g~lWigt~~~-------Gl~ 518 (781)
T 3v9f_A 460 NKKIWIGTH-------AGVFVIDLASKKVIHHYDTSN-------SQLLENFVRSIAQDSEGRFWIGTFGG-------GVG 518 (781)
T ss_dssp TSEEEEEET-------TEEEEEESSSSSCCEEECTTT-------SSCSCSCEEEEEECTTCCEEEEESSS-------CEE
T ss_pred CCCEEEEEC-------CceEEEeCCCCeEEecccCcc-------cccccceeEEEEEcCCCCEEEEEcCC-------CEE
Confidence 356666331 358999999988876653110 01111122334333 46677643211 388
Q ss_pred EEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcE-EEEEcCCCcEEEeecCCCCCCCCCCcEE
Q 010115 177 TFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDL-HMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (518)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~-~~yd~~t~~W~~~~~~g~~p~~r~~~~~ 254 (518)
+||+.+++++.......++.... .+++. .++.||+... ..+ .+||+++.+++.......+|.... .++
T Consensus 519 ~~~~~~~~~~~~~~~~~l~~~~i-~~i~~d~~g~lWi~T~--------~Glv~~~d~~~~~~~~~~~~~gl~~~~i-~~i 588 (781)
T 3v9f_A 519 IYTPDMQLVRKFNQYEGFCSNTI-NQIYRSSKGQMWLATG--------EGLVCFPSARNFDYQVFQRKEGLPNTHI-RAI 588 (781)
T ss_dssp EECTTCCEEEEECTTTTCSCSCE-EEEEECTTSCEEEEET--------TEEEEESCTTTCCCEEECGGGTCSCCCC-CEE
T ss_pred EEeCCCCeEEEccCCCCCCCCee-EEEEECCCCCEEEEEC--------CCceEEECCCCCcEEEccccCCCCCceE-EEE
Confidence 99999999988764223332222 22222 2467887521 236 889999888877753323444333 344
Q ss_pred EEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEcccCCCCCcCeEEEEEC
Q 010115 255 ALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDI 332 (518)
Q Consensus 255 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~ 332 (518)
+...+..|++.+. +.+.+||+++.+++......-.+...+...++.. +++||+ ||.. -+..|||
T Consensus 589 ~~d~~g~lW~~t~-------~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~------Gl~~f~p 654 (781)
T 3v9f_A 589 SEDKNGNIWASTN-------TGISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYF-GSIN------GLCFFNP 654 (781)
T ss_dssp EECSSSCEEEECS-------SCEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSCEEE-EETT------EEEEECS
T ss_pred EECCCCCEEEEcC-------CceEEEECCCCceEEecccCCccccccccCceEECCCCEEEE-ECCC------ceEEECh
Confidence 4444443776542 3499999999998887653223444333333333 566665 4432 2666776
Q ss_pred CC
Q 010115 333 LK 334 (518)
Q Consensus 333 ~~ 334 (518)
..
T Consensus 655 ~~ 656 (781)
T 3v9f_A 655 DI 656 (781)
T ss_dssp CC
T ss_pred hh
Confidence 54
No 124
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=94.98 E-value=0.64 Score=50.27 Aligned_cols=106 Identities=6% Similarity=-0.085 Sum_probs=50.2
Q ss_pred cEEEEEcCC-CeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCc
Q 010115 276 DLYSLDFET-MIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGF 354 (518)
Q Consensus 276 ~v~~yd~~~-~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~ 354 (518)
.++.+|+.+ .+-..+..... ........+. -+++.+++..........+++++|+.+.+...+....... .....
T Consensus 264 ~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~--~~~~~ 339 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLGKE-QDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPT--WVPLH 339 (741)
T ss_dssp EEEEECSSTTCCCEEECCCSC-SSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSS--CCCCC
T ss_pred EEEEEECCCCCceEEecCCCC-cceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCC--cCCcC
Confidence 688899887 76555432100 0111111222 3444444433322234467999999998887764321110 00001
Q ss_pred eEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccC
Q 010115 355 TLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (518)
Q Consensus 355 s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~ 389 (518)
....+..+++ +++.+..++ ...+|.+|....
T Consensus 340 ~~~~~spdg~--~~~~~~~~g--~~~l~~~~~~~~ 370 (741)
T 2ecf_A 340 NSLRFLDDGS--ILWSSERTG--FQHLYRIDSKGK 370 (741)
T ss_dssp SCCEECTTSC--EEEEECTTS--SCEEEEECSSSC
T ss_pred CceEECCCCe--EEEEecCCC--ccEEEEEcCCCC
Confidence 1223332233 555554433 346777775543
No 125
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=94.96 E-value=2.3 Score=41.35 Aligned_cols=199 Identities=11% Similarity=-0.023 Sum_probs=97.6
Q ss_pred CcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCC
Q 010115 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 193 (518)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~ 193 (518)
..+|++|+.+..-..+... +............+..|++.... ..++++|+.+.+-..+..
T Consensus 60 ~~l~~~d~~~g~~~~lt~~----------~~~~~~~~~~spdg~~l~~~~~~-------~~l~~~d~~~g~~~~~~~--- 119 (388)
T 3pe7_A 60 WNYYLLDLNTQVATQLTEG----------RGDNTFGGFLSPDDDALFYVKDG-------RNLMRVDLATLEENVVYQ--- 119 (388)
T ss_dssp CEEEEEETTTCEEEECCCS----------SCBCSSSCEECTTSSEEEEEETT-------TEEEEEETTTCCEEEEEE---
T ss_pred ceEEEEeCCCCceEEeeeC----------CCCCccceEEcCCCCEEEEEeCC-------CeEEEEECCCCcceeeee---
Confidence 4689999998887776541 11111111111123455544321 269999999988666554
Q ss_pred CCCCCcceEEEE--ECCEEEEEc---ccCC-------------CCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEE
Q 010115 194 IPVARSGHTVVR--ASSVLILFG---GEDG-------------KRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 255 (518)
Q Consensus 194 ~p~~r~~~~~~~--~~~~iyv~G---G~~~-------------~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~ 255 (518)
.+.......... -++++++.- +... .......++++|+.+.+-+.+... + .... ...
T Consensus 120 ~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~---~-~~~~-~~~ 194 (388)
T 3pe7_A 120 VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQE---N-QWLG-HPI 194 (388)
T ss_dssp CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE---S-SCEE-EEE
T ss_pred chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecC---C-cccc-ccE
Confidence 343322222221 123333210 0000 001236799999998877666421 1 1122 233
Q ss_pred EEC--CcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE--CCE-EEEEcccCCCCCcCeEEEE
Q 010115 256 LYD--DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTK-WYIAGGGSRKKRHAETLIF 330 (518)
Q Consensus 256 ~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~y 330 (518)
... ++.|+.............+|.+|+++...+.+... .... ......+ +++ |+..... .......++++
T Consensus 195 ~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~---~~~~-~~~~~~~spdg~~l~~~~~~-~~~~~~~l~~~ 269 (388)
T 3pe7_A 195 YRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTH---AEGE-SCTHEFWVPDGSALVYVSYL-KGSPDRFIYSA 269 (388)
T ss_dssp EETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCC---CTTE-EEEEEEECTTSSCEEEEEEE-TTCCCEEEEEE
T ss_pred ECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeC---CCCc-ccccceECCCCCEEEEEecC-CCCCcceEEEE
Confidence 333 44333322211122245899999988776666432 1111 1112223 454 5443322 22112359999
Q ss_pred ECCCCceEEeec
Q 010115 331 DILKGEWSVAIT 342 (518)
Q Consensus 331 d~~~~~W~~~~~ 342 (518)
|+.+++-+.+..
T Consensus 270 d~~~g~~~~l~~ 281 (388)
T 3pe7_A 270 DPETLENRQLTS 281 (388)
T ss_dssp CTTTCCEEEEEE
T ss_pred ecCCCceEEEEc
Confidence 999988776653
No 126
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=94.91 E-value=2.2 Score=41.54 Aligned_cols=189 Identities=9% Similarity=0.039 Sum_probs=101.0
Q ss_pred EEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCC-CCCCcceEEEEEC--CEEEEEcccCCCCcccCcEEEEEcCCC
Q 010115 158 KVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDI-PVARSGHTVVRAS--SVLILFGGEDGKRRKLNDLHMFDLKSL 234 (518)
Q Consensus 158 ~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~-p~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~yd~~t~ 234 (518)
.+++.|+.+. .+..||..+.+...... . .....-.++.... +.+++.|+.+. .+.++|+.+.
T Consensus 87 ~~l~s~~~dg------~i~iwd~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~l~s~~~d~------~i~iwd~~~~ 151 (383)
T 3ei3_B 87 TTVAVGSKGG------DIILWDYDVQNKTSFIQ---GMGPGDAITGMKFNQFNTNQLFVSSIRG------ATTLRDFSGS 151 (383)
T ss_dssp TEEEEEEBTS------CEEEEETTSTTCEEEEC---CCSTTCBEEEEEEETTEEEEEEEEETTT------EEEEEETTSC
T ss_pred CEEEEEcCCC------eEEEEeCCCcccceeee---cCCcCCceeEEEeCCCCCCEEEEEeCCC------EEEEEECCCC
Confidence 5777777643 58889999887665542 1 1112222333333 46777776543 4888999887
Q ss_pred cEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCE-E
Q 010115 235 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK-W 312 (518)
Q Consensus 235 ~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~-i 312 (518)
....+... ........+++...+..+++.|+.++ .+..||+....-..+... ...-.+++.. +++ +
T Consensus 152 ~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~ 219 (383)
T 3ei3_B 152 VIQVFAKT--DSWDYWYCCVDVSVSRQMLATGDSTG-----RLLLLGLDGHEIFKEKLH-----KAKVTHAEFNPRCDWL 219 (383)
T ss_dssp EEEEEECC--CCSSCCEEEEEEETTTTEEEEEETTS-----EEEEEETTSCEEEEEECS-----SSCEEEEEECSSCTTE
T ss_pred ceEEEecc--CCCCCCeEEEEECCCCCEEEEECCCC-----CEEEEECCCCEEEEeccC-----CCcEEEEEECCCCCCE
Confidence 77666421 11111222333444433677776543 689999865554444321 1111222222 344 7
Q ss_pred EEEcccCCCCCcCeEEEEECCC----CceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEccc
Q 010115 313 YIAGGGSRKKRHAETLIFDILK----GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (518)
Q Consensus 313 yv~GG~~~~~~~~~v~~yd~~~----~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~ 388 (518)
++.|+.++ .+.+||+.+ ........ .......+.+.. .++.+++.|+.++ .+.+||+.+
T Consensus 220 l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~-------~~~~v~~~~~s~-~~~~~l~~~~~d~----~i~iwd~~~ 282 (383)
T 3ei3_B 220 MATSSVDA-----TVKLWDLRNIKDKNSYIAEMP-------HEKPVNAAYFNP-TDSTKLLTTDQRN----EIRVYSSYD 282 (383)
T ss_dssp EEEEETTS-----EEEEEEGGGCCSTTCEEEEEE-------CSSCEEEEEECT-TTSCEEEEEESSS----EEEEEETTB
T ss_pred EEEEeCCC-----EEEEEeCCCCCcccceEEEec-------CCCceEEEEEcC-CCCCEEEEEcCCC----cEEEEECCC
Confidence 77777653 488999876 33322211 111223334432 0234566666543 689999876
Q ss_pred CC
Q 010115 389 NE 390 (518)
Q Consensus 389 ~~ 390 (518)
.+
T Consensus 283 ~~ 284 (383)
T 3ei3_B 283 WS 284 (383)
T ss_dssp TT
T ss_pred Cc
Confidence 54
No 127
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=94.88 E-value=2.8 Score=40.00 Aligned_cols=105 Identities=10% Similarity=0.113 Sum_probs=57.0
Q ss_pred CEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCceeEEE
Q 010115 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWT 177 (518)
Q Consensus 99 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~ 177 (518)
+.+++.|+.+ ..+.+||..+......... ......-.+++.. ++..++.|+.+. .+..
T Consensus 54 g~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~----------~~h~~~v~~~~~~~~~~~l~s~~~dg------~v~i 112 (368)
T 3mmy_A 54 GNFLIAGSWA-----NDVRCWEVQDSGQTIPKAQ----------QMHTGPVLDVCWSDDGSKVFTASCDK------TAKM 112 (368)
T ss_dssp SEEEEEEETT-----SEEEEEEECTTSCEEEEEE----------EECSSCEEEEEECTTSSEEEEEETTS------EEEE
T ss_pred ceEEEEECCC-----CcEEEEEcCCCCceeEEEe----------ccccCCEEEEEECcCCCEEEEEcCCC------cEEE
Confidence 3788888755 3588888886332221110 0001011222222 456666666543 6888
Q ss_pred EECCCCcEEEeeecCCCCCCCcceEEEE---ECCEEEEEcccCCCCcccCcEEEEEcCCCc
Q 010115 178 FDTETECWSVVEAKGDIPVARSGHTVVR---ASSVLILFGGEDGKRRKLNDLHMFDLKSLT 235 (518)
Q Consensus 178 yd~~t~~W~~~~~~~~~p~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 235 (518)
||..+.+...... .. ..-.++.. .++.+++.|+.++ .+.+||+.+.+
T Consensus 113 wd~~~~~~~~~~~---~~--~~v~~~~~~~~~~~~~l~~~~~dg------~i~vwd~~~~~ 162 (368)
T 3mmy_A 113 WDLSSNQAIQIAQ---HD--APVKTIHWIKAPNYSCVMTGSWDK------TLKFWDTRSSN 162 (368)
T ss_dssp EETTTTEEEEEEE---CS--SCEEEEEEEECSSCEEEEEEETTS------EEEEECSSCSS
T ss_pred EEcCCCCceeecc---cc--CceEEEEEEeCCCCCEEEEccCCC------cEEEEECCCCc
Confidence 9999888665443 11 11122222 2467777777653 48888887654
No 128
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=94.88 E-value=1.4 Score=43.00 Aligned_cols=237 Identities=10% Similarity=0.018 Sum_probs=108.4
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE----CCEEEEEcCcCCCCCCce
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW----GKKVLLVGGKTDSGSDRV 173 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~ 173 (518)
++.+++.|+.+ ..+.+||..+..-...... .. ...++... ++.+++.|+...
T Consensus 111 ~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~------------~~-~~~~~~~~~~~~~~~~~~~~~~~~------ 166 (408)
T 4a11_B 111 DTGMFTSSSFD-----KTLKVWDTNTLQTADVFNF------------EE-TVYSHHMSPVSTKHCLVAVGTRGP------ 166 (408)
T ss_dssp CTTCEEEEETT-----SEEEEEETTTTEEEEEEEC------------SS-CEEEEEECSSCSSCCEEEEEESSS------
T ss_pred CCcEEEEEeCC-----CeEEEeeCCCCccceeccC------------CC-ceeeeEeecCCCCCcEEEEEcCCC------
Confidence 34466777644 4688899888654443321 01 11122221 334666666543
Q ss_pred eEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-C-CEEEEEcccCCCCcccCcEEEEEcCCCc--EEEeecC-C----C
Q 010115 174 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-S-SVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCT-G----T 244 (518)
Q Consensus 174 ~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~-g----~ 244 (518)
.+..||+.+.+-...-. . ....-.+++.. + ..+++.|+.++ .+.+||+.+.. ...+... + .
T Consensus 167 ~v~~~d~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~ll~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~~ 236 (408)
T 4a11_B 167 KVQLCDLKSGSCSHILQ---G-HRQEILAVSWSPRYDYILATASADS------RVKLWDVRRASGCLITLDQHNGKKSQA 236 (408)
T ss_dssp SEEEEESSSSCCCEEEC---C-CCSCEEEEEECSSCTTEEEEEETTS------CEEEEETTCSSCCSEECCTTTTCSCCC
T ss_pred eEEEEeCCCcceeeeec---C-CCCcEEEEEECCCCCcEEEEEcCCC------cEEEEECCCCCccccccccccccccee
Confidence 58888988765322211 0 11111222232 2 33777777654 37888886543 2222100 0 0
Q ss_pred -----CCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCC--CcceEEEEECCEEEEEcc
Q 010115 245 -----GPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSP--RAGCCGVLCGTKWYIAGG 317 (518)
Q Consensus 245 -----~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~--r~~~~~~~~~~~iyv~GG 317 (518)
......-.+++...+..+++.|+.++ .+..||+.+..-............ ..........+..+++++
T Consensus 237 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (408)
T 4a11_B 237 VESANTAHNGKVNGLCFTSDGLHLLTVGTDN-----RMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVP 311 (408)
T ss_dssp TTTSSCSCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEE
T ss_pred eccccccccCceeEEEEcCCCCEEEEecCCC-----eEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEe
Confidence 01111112233333333566666543 489999877543222111000111 111111111233344443
Q ss_pred cCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 318 GSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 318 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
.. ..+.+||..+.+-...... .......+.+.. + +.+++.|+.++ .+.+||+.+.+
T Consensus 312 ~~-----~~i~v~d~~~~~~~~~~~~------~~~~v~~~~~s~-~-~~~l~s~~~dg----~i~iw~~~~~~ 367 (408)
T 4a11_B 312 YG-----STIAVYTVYSGEQITMLKG------HYKTVDCCVFQS-N-FQELYSGSRDC----NILAWVPSLYE 367 (408)
T ss_dssp ET-----TEEEEEETTTCCEEEEECC------CSSCEEEEEEET-T-TTEEEEEETTS----CEEEEEECC--
T ss_pred cC-----CEEEEEECcCCcceeeecc------CCCeEEEEEEcC-C-CCEEEEECCCC----eEEEEeCCCCC
Confidence 33 3588999887654432211 111223344432 2 33566777654 58888887765
No 129
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=94.81 E-value=2.8 Score=39.66 Aligned_cols=223 Identities=7% Similarity=-0.024 Sum_probs=109.5
Q ss_pred CEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCceeEEE
Q 010115 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWT 177 (518)
Q Consensus 99 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~ 177 (518)
+.||+.+-.. +.+++|++. ...+..... ...-.+++.. ++++|+..... ..+.+
T Consensus 57 ~~l~~~d~~~-----~~i~~~~~~-g~~~~~~~~-------------~~~~~gl~~d~dG~l~v~~~~~------~~v~~ 111 (305)
T 3dr2_A 57 RTLVWSDLVG-----RRVLGWRED-GTVDVLLDA-------------TAFTNGNAVDAQQRLVHCEHGR------RAITR 111 (305)
T ss_dssp TEEEEEETTT-----TEEEEEETT-SCEEEEEES-------------CSCEEEEEECTTSCEEEEETTT------TEEEE
T ss_pred CEEEEEECCC-----CEEEEEeCC-CCEEEEeCC-------------CCccceeeECCCCCEEEEECCC------CEEEE
Confidence 4577776432 458889884 444433220 1112333333 56787763211 25889
Q ss_pred EECCCCcEEEeeecC-CCCCCCcceEEEE-ECCEEEEE----cccCC-------CCcccCcEEEEEcCCCcEEEeecCCC
Q 010115 178 FDTETECWSVVEAKG-DIPVARSGHTVVR-ASSVLILF----GGEDG-------KRRKLNDLHMFDLKSLTWLPLHCTGT 244 (518)
Q Consensus 178 yd~~t~~W~~~~~~~-~~p~~r~~~~~~~-~~~~iyv~----GG~~~-------~~~~~~~~~~yd~~t~~W~~~~~~g~ 244 (518)
||+. ++.+.+.... ..+..+- ..+++ -++.||+. |-... .......+++||+++.+++.+. ...
T Consensus 112 ~~~~-g~~~~~~~~~~~~~~~~~-~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~ 188 (305)
T 3dr2_A 112 SDAD-GQAHLLVGRYAGKRLNSP-NDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLD 188 (305)
T ss_dssp ECTT-SCEEEEECEETTEECSCC-CCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EES
T ss_pred ECCC-CCEEEEEeccCCCccCCC-CCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCC
Confidence 9986 6666554211 1111111 22333 35788885 43210 0112356999999888877664 111
Q ss_pred CCCCCCCcEEEEEC-CcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCC
Q 010115 245 GPSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKK 322 (518)
Q Consensus 245 ~p~~r~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~ 322 (518)
.| ...+... ++.||+..........+.+++|++..............+... -.+++.. +++||+..+
T Consensus 189 ~p-----~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~-pdgi~~d~~G~lwv~~~----- 257 (305)
T 3dr2_A 189 HP-----NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGL-PDGFCVDRGGWLWSSSG----- 257 (305)
T ss_dssp SE-----EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSC-CCSEEECTTSCEEECCS-----
T ss_pred CC-----cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCC-CCeEEECCCCCEEEecC-----
Confidence 11 2334443 445777643221111357999998765432211110001111 1123332 567887652
Q ss_pred CcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEc
Q 010115 323 RHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFG 371 (518)
Q Consensus 323 ~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~G 371 (518)
..+++||++......+.. + . ....+.+. .+.+.||+..
T Consensus 258 --~gv~~~~~~g~~~~~~~~-~----~---~~~~~~f~-~d~~~L~it~ 295 (305)
T 3dr2_A 258 --TGVCVFDSDGQLLGHIPT-P----G---TASNCTFD-QAQQRLFITG 295 (305)
T ss_dssp --SEEEEECTTSCEEEEEEC-S----S---CCCEEEEC-TTSCEEEEEE
T ss_pred --CcEEEECCCCCEEEEEEC-C----C---ceeEEEEe-CCCCEEEEEc
Confidence 349999998776666542 1 1 13344444 3445677654
No 130
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=94.80 E-value=1.8 Score=41.40 Aligned_cols=197 Identities=10% Similarity=0.020 Sum_probs=93.6
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCcccCcEEEEEcCCC
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~ 234 (518)
++++++.|+.+. .+..||..+.+-...-. ... ..-.+++.. ++..++.|+.++ .+.+||+.+.
T Consensus 43 ~~~~l~~~~~dg------~i~vwd~~~~~~~~~~~---~h~-~~v~~~~~~~~~~~l~s~~~dg------~i~iwd~~~~ 106 (369)
T 3zwl_B 43 EGDLLFSCSKDS------SASVWYSLNGERLGTLD---GHT-GTIWSIDVDCFTKYCVTGSADY------SIKLWDVSNG 106 (369)
T ss_dssp TSCEEEEEESSS------CEEEEETTTCCEEEEEC---CCS-SCEEEEEECTTSSEEEEEETTT------EEEEEETTTC
T ss_pred CCCEEEEEeCCC------EEEEEeCCCchhhhhhh---hcC-CcEEEEEEcCCCCEEEEEeCCC------eEEEEECCCC
Confidence 455666666543 58888988776443221 111 111222222 456666766543 4888999877
Q ss_pred cEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCe----EEEeecCCC----CCCCCcceEEE
Q 010115 235 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI----WTRIKIRGF----HPSPRAGCCGV 306 (518)
Q Consensus 235 ~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~----W~~v~~~~~----~p~~r~~~~~~ 306 (518)
+....- . ......+++...+..+++.++.+.......+..||+.+.. +........ ..........+
T Consensus 107 ~~~~~~---~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (369)
T 3zwl_B 107 QCVATW---K--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA 181 (369)
T ss_dssp CEEEEE---E--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred cEEEEe---e--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence 654443 1 1111223334333335555554322222467777764331 221111000 00000012222
Q ss_pred EE--CCEEEEEcccCCCCCcCeEEEEECCC-CceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEE
Q 010115 307 LC--GTKWYIAGGGSRKKRHAETLIFDILK-GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEV 383 (518)
Q Consensus 307 ~~--~~~iyv~GG~~~~~~~~~v~~yd~~~-~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~ 383 (518)
.+ +++.++.|+.++ .+.+||+.+ ..-...... .......+.+.. + +.+++.|+.++ .+.+
T Consensus 182 ~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~------~~~~v~~~~~~~-~-~~~l~~~~~d~----~i~v 244 (369)
T 3zwl_B 182 GWSTKGKYIIAGHKDG-----KISKYDVSNNYEYVDSIDL------HEKSISDMQFSP-D-LTYFITSSRDT----NSFL 244 (369)
T ss_dssp EECGGGCEEEEEETTS-----EEEEEETTTTTEEEEEEEC------CSSCEEEEEECT-T-SSEEEEEETTS----EEEE
T ss_pred EEcCCCCEEEEEcCCC-----EEEEEECCCCcEeEEEEec------CCCceeEEEECC-C-CCEEEEecCCc----eEEE
Confidence 22 556677776543 489999987 333322211 111223333332 2 33556666543 6888
Q ss_pred EEcccCC
Q 010115 384 LSIEKNE 390 (518)
Q Consensus 384 yd~~~~~ 390 (518)
||+.+.+
T Consensus 245 ~d~~~~~ 251 (369)
T 3zwl_B 245 VDVSTLQ 251 (369)
T ss_dssp EETTTCC
T ss_pred EECCCCc
Confidence 8887755
No 131
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=94.80 E-value=5.4 Score=42.93 Aligned_cols=123 Identities=15% Similarity=0.078 Sum_probs=68.6
Q ss_pred EEEECCEEEEEcCcCCCCCCceeEEEEECCCCc--EEEeeecCCC--CC---CCcceEEEEECCEEEEEcccCCCCcccC
Q 010115 152 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDI--PV---ARSGHTVVRASSVLILFGGEDGKRRKLN 224 (518)
Q Consensus 152 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~--p~---~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 224 (518)
-++.++.||+.... ..++.+|..|++ |+.-...... +. .....+.++.+++||+... -.
T Consensus 66 P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~-------dg 131 (689)
T 1yiq_A 66 PIVVDGVMYTTGPF-------SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL-------DG 131 (689)
T ss_dssp CEEETTEEEEECGG-------GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------TS
T ss_pred CEEECCEEEEEcCC-------CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc-------CC
Confidence 34679999997653 258999998876 8864321100 00 0112234567888888532 24
Q ss_pred cEEEEEcCCCc--EEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCC-CCCCCCcEEEEEcCCCe--EEEe
Q 010115 225 DLHMFDLKSLT--WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSS-KSKTLNDLYSLDFETMI--WTRI 290 (518)
Q Consensus 225 ~~~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~-~~~~~~~v~~yd~~~~~--W~~v 290 (518)
.++.+|.++.+ |+.-.............+.++.++. +|+ |... ....-..++.||.++.+ |+.-
T Consensus 132 ~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~v-g~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 132 RLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGK-VVI-GNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp EEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTE-EEE-CCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCE-EEE-EeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 58999998764 8765410010111122233455655 555 3221 11234579999998765 8764
No 132
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=94.77 E-value=0.6 Score=45.30 Aligned_cols=193 Identities=9% Similarity=0.080 Sum_probs=98.9
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCC
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~ 234 (518)
++++++.||.+. .+..||..++.|........ .....-.+++. -++.+++.|+.+.. +.++|..+.
T Consensus 27 ~g~~las~~~D~------~i~iw~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~s~D~~------v~iw~~~~~ 93 (345)
T 3fm0_A 27 AGTLLASCGGDR------RIRIWGTEGDSWICKSVLSE-GHQRTVRKVAWSPCGNYLASASFDAT------TCIWKKNQD 93 (345)
T ss_dssp TSSCEEEEETTS------CEEEEEEETTEEEEEEEECS-SCSSCEEEEEECTTSSEEEEEETTSC------EEEEEECCC
T ss_pred CCCEEEEEcCCC------eEEEEEcCCCcceeeeeecc-ccCCcEEEEEECCCCCEEEEEECCCc------EEEEEccCC
Confidence 567777777643 47778888888764432100 11111122222 24667777776543 667787777
Q ss_pred cEEEeecCCCCCC-CCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC-eEEEeecCCCCCCCCcceEEEEE--CC
Q 010115 235 TWLPLHCTGTGPS-PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM-IWTRIKIRGFHPSPRAGCCGVLC--GT 310 (518)
Q Consensus 235 ~W~~~~~~g~~p~-~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~-~W~~v~~~~~~p~~r~~~~~~~~--~~ 310 (518)
.+..+.. +.. ...-.+++...+..+++.|+.++ .+..||+.+. .+..+..... .......+.+ ++
T Consensus 94 ~~~~~~~---~~~h~~~v~~v~~sp~~~~l~s~s~D~-----~v~iwd~~~~~~~~~~~~~~~---h~~~v~~~~~~p~~ 162 (345)
T 3fm0_A 94 DFECVTT---LEGHENEVKSVAWAPSGNLLATCSRDK-----SVWVWEVDEEDEYECVSVLNS---HTQDVKHVVWHPSQ 162 (345)
T ss_dssp -EEEEEE---ECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEEECTTSCEEEEEEECC---CCSCEEEEEECSSS
T ss_pred CeEEEEE---ccCCCCCceEEEEeCCCCEEEEEECCC-----eEEEEECCCCCCeEEEEEecC---cCCCeEEEEECCCC
Confidence 6655431 111 11122333333333677777654 4888887654 3433332211 1111222223 56
Q ss_pred EEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcc
Q 010115 311 KWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIE 387 (518)
Q Consensus 311 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~ 387 (518)
++++.|+.++. +.+||..+..|..+...... ......+.+.. ++.+++.|+.++ .|.++|..
T Consensus 163 ~~l~s~s~d~~-----i~~w~~~~~~~~~~~~~~~h----~~~v~~l~~sp--~g~~l~s~s~D~----~v~iW~~~ 224 (345)
T 3fm0_A 163 ELLASASYDDT-----VKLYREEEDDWVCCATLEGH----ESTVWSLAFDP--SGQRLASCSDDR----TVRIWRQY 224 (345)
T ss_dssp SCEEEEETTSC-----EEEEEEETTEEEEEEEECCC----SSCEEEEEECT--TSSEEEEEETTS----CEEEEEEE
T ss_pred CEEEEEeCCCc-----EEEEEecCCCEEEEEEecCC----CCceEEEEECC--CCCEEEEEeCCC----eEEEeccc
Confidence 77777776543 88899888888754432111 11123333332 234567777654 46666653
No 133
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=94.72 E-value=2.2 Score=44.88 Aligned_cols=205 Identities=15% Similarity=0.145 Sum_probs=108.3
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCC--------CCCCcceEEEEECCEEEEEcccCCCCcccCcEE
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDI--------PVARSGHTVVRASSVLILFGGEDGKRRKLNDLH 227 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~--------p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 227 (518)
+..+|+..-.. +.+.++|..+.+=...-+.+.+ |.+|.....+..++..+++-= .....++
T Consensus 255 Gk~l~v~n~~~------~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~-----~~~g~v~ 323 (567)
T 1qks_A 255 DKYAIAGAYWP------PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV-----KETGKIL 323 (567)
T ss_dssp TTEEEEEEEET------TEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE-----TTTTEEE
T ss_pred CCEEEEEEccC------CeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe-----cCCCeEE
Confidence 45677764332 3577889887664332221111 233433322222333333311 1246788
Q ss_pred EEEcCCCcEEEeecCCCCCCCCCCcEEEEEC-CcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecC-CCCCCCCcceEE
Q 010115 228 MFDLKSLTWLPLHCTGTGPSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIR-GFHPSPRAGCCG 305 (518)
Q Consensus 228 ~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~-~~~p~~r~~~~~ 305 (518)
+.|..+.+...+. ..+.++.-|...... ++++|+.... .+.|.++|.++++=...-.. +..|.+..+..
T Consensus 324 ~vd~~~~~~~~v~---~i~~~~~~~d~~~~pdgr~~~va~~~-----sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~- 394 (567)
T 1qks_A 324 LVDYTDLNNLKTT---EISAERFLHDGGLDGSHRYFITAANA-----RNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN- 394 (567)
T ss_dssp EEETTCSSEEEEE---EEECCSSEEEEEECTTSCEEEEEEGG-----GTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-
T ss_pred EEecCCCccceee---eeeccccccCceECCCCCEEEEEeCC-----CCeEEEEECCCCcEEEEEeccCcCCCCcccee-
Confidence 9998877655554 344556666555544 4444444321 36799999998865444344 44454433332
Q ss_pred EEE--CCEEEEEcccCCCCCcCeEEEEECCCCc-----eEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCC--
Q 010115 306 VLC--GTKWYIAGGGSRKKRHAETLIFDILKGE-----WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE-- 376 (518)
Q Consensus 306 ~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~-----W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~-- 376 (518)
... .+.+|+.+-... +.|-++|..+.. |+.+...+.. . +.++.+..+.+..++|+---.+.+
T Consensus 395 ~~~p~~g~v~~t~~~g~----~~Vsvid~~~~~~~~~~~kvv~~i~~~---g--~g~~~i~~~p~~~~l~v~~~~~~~~~ 465 (567)
T 1qks_A 395 FVHPTFGPVWATSHMGD----DSVALIGTDPEGHPDNAWKILDSFPAL---G--GGSLFIKTHPNSQYLYVDATLNPEAE 465 (567)
T ss_dssp EEETTTEEEEEEEBSSS----SEEEEEECCTTTCTTTBTSEEEEEECS---C--SCCCCEECCTTCSEEEEECTTCSSHH
T ss_pred eECCCCCcEEEeCCCCC----CeEEEecCCCCCCccccCEEEEEEecC---C--CCCEEEEeCCCCCeEEEecCCCCCcc
Confidence 233 356777653221 348888877633 8877653321 1 112222234566788874422222
Q ss_pred CCCcEEEEEcccC
Q 010115 377 PSNQVEVLSIEKN 389 (518)
Q Consensus 377 ~~~~v~~yd~~~~ 389 (518)
..+.|.+||+.+.
T Consensus 466 ~~~~v~v~d~~~~ 478 (567)
T 1qks_A 466 ISGSVAVFDIKAM 478 (567)
T ss_dssp HHTCEEEEEGGGC
T ss_pred cCceEEEEECCcc
Confidence 2568999999876
No 134
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=94.69 E-value=1.6 Score=43.43 Aligned_cols=148 Identities=9% Similarity=0.061 Sum_probs=77.8
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCC
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~ 234 (518)
++.+++.|+.+. .+..||..+.+-...-. ... ..-.+++. -++.+++.|+.+.. +.+||+.+.
T Consensus 119 ~~~~l~s~s~Dg------~i~vwd~~~~~~~~~l~---~h~-~~V~~v~~~~~~~~l~sgs~D~~------i~iwd~~~~ 182 (410)
T 1vyh_C 119 VFSVMVSASEDA------TIKVWDYETGDFERTLK---GHT-DSVQDISFDHSGKLLASCSADMT------IKLWDFQGF 182 (410)
T ss_dssp SSSEEEEEESSS------CEEEEETTTCCCCEEEC---CCS-SCEEEEEECTTSSEEEEEETTSC------CCEEETTSS
T ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEEEEe---ccC-CcEEEEEEcCCCCEEEEEeCCCe------EEEEeCCCC
Confidence 356777777643 58888988876433221 111 11122222 24677778876643 567787665
Q ss_pred cEEEeecCCCCCC-CCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE--CCE
Q 010115 235 TWLPLHCTGTGPS-PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTK 311 (518)
Q Consensus 235 ~W~~~~~~g~~p~-~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~--~~~ 311 (518)
+-... +.. ...-.+++...+...++.|+.++ .+..||+.+..-...-.. . ......+.. ++.
T Consensus 183 ~~~~~-----~~~h~~~V~~v~~~p~~~~l~s~s~D~-----~i~~wd~~~~~~~~~~~~----h-~~~v~~~~~~~~g~ 247 (410)
T 1vyh_C 183 ECIRT-----MHGHDHNVSSVSIMPNGDHIVSASRDK-----TIKMWEVQTGYCVKTFTG----H-REWVRMVRPNQDGT 247 (410)
T ss_dssp CEEEC-----CCCCSSCEEEEEECSSSSEEEEEETTS-----EEEEEETTTCCEEEEEEC----C-SSCEEEEEECTTSS
T ss_pred ceeEE-----EcCCCCCEEEEEEeCCCCEEEEEeCCC-----eEEEEECCCCcEEEEEeC----C-CccEEEEEECCCCC
Confidence 43221 111 11122333333332667776654 588999887653322111 1 111122222 567
Q ss_pred EEEEcccCCCCCcCeEEEEECCCCceEE
Q 010115 312 WYIAGGGSRKKRHAETLIFDILKGEWSV 339 (518)
Q Consensus 312 iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 339 (518)
+++.|+.++. +.++|+.+.....
T Consensus 248 ~l~s~s~D~~-----v~vwd~~~~~~~~ 270 (410)
T 1vyh_C 248 LIASCSNDQT-----VRVWVVATKECKA 270 (410)
T ss_dssp EEEEEETTSC-----EEEEETTTCCEEE
T ss_pred EEEEEcCCCe-----EEEEECCCCceee
Confidence 7778776543 7888887766543
No 135
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=94.69 E-value=2.9 Score=39.35 Aligned_cols=145 Identities=13% Similarity=0.056 Sum_probs=73.3
Q ss_pred CcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeec
Q 010115 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 191 (518)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 191 (518)
+.++++|+.+.+-...-.. +...-.-+.++.. ++.+|+.+... ..++.+|+.+.+-...-.
T Consensus 11 ~~v~~~d~~~~~~~~~~~~----------~~~~~~~~~~~~s~dg~~l~v~~~~~------~~v~~~d~~~~~~~~~~~- 73 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITI----------ADAGPTPMVPMVAPGGRIAYATVNKS------ESLVKIDLVTGETLGRID- 73 (337)
T ss_dssp TEEEEEETTTTEEEEEEEC----------TTCTTCCCCEEECTTSSEEEEEETTT------TEEEEEETTTCCEEEEEE-
T ss_pred CeEEEEECCCCcEEEEEEc----------CCCCCCccceEEcCCCCEEEEEeCCC------CeEEEEECCCCCeEeeEE-
Confidence 4689999988654432221 1100001223322 34788776532 369999999887543222
Q ss_pred CCCCCC----CcceEEEEE--CCEEEEEcccC---CCCc--ccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEE-CC
Q 010115 192 GDIPVA----RSGHTVVRA--SSVLILFGGED---GKRR--KLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DD 259 (518)
Q Consensus 192 ~~~p~~----r~~~~~~~~--~~~iyv~GG~~---~~~~--~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~ 259 (518)
.+.+ ..-+.++.. ++.+|+..... .... .-..+++||+.+.+....-..+. .-..++.. ++
T Consensus 74 --~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-----~~~~~~~s~dg 146 (337)
T 1pby_B 74 --LSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR-----QITMLAWARDG 146 (337)
T ss_dssp --CCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS-----SCCCEEECTTS
T ss_pred --cCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC-----CcceeEECCCC
Confidence 1110 011223332 34677764211 0000 13679999998877654321111 12233443 34
Q ss_pred cEEEEEcCCCCCCCCCcEEEEEcCCCeEEEe
Q 010115 260 KNLLIFGGSSKSKTLNDLYSLDFETMIWTRI 290 (518)
Q Consensus 260 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v 290 (518)
+.+|+.+ ++++.+|+.+.+-...
T Consensus 147 ~~l~~~~--------~~i~~~d~~~~~~~~~ 169 (337)
T 1pby_B 147 SKLYGLG--------RDLHVMDPEAGTLVED 169 (337)
T ss_dssp SCEEEES--------SSEEEEETTTTEEEEE
T ss_pred CEEEEeC--------CeEEEEECCCCcEeee
Confidence 4466652 4699999988765443
No 136
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=94.65 E-value=2.6 Score=41.46 Aligned_cols=200 Identities=13% Similarity=0.094 Sum_probs=98.9
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEE-----EeeecCCCC-CCCcceEEEEE-CC-EEEEEcccCCCCcccCcEE
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWS-----VVEAKGDIP-VARSGHTVVRA-SS-VLILFGGEDGKRRKLNDLH 227 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~-----~~~~~~~~p-~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~ 227 (518)
++.+++.|+.+. .+..||..+.... .+.. +. ....-.++... ++ .+++.|+.++ .+.
T Consensus 93 ~~~~l~s~s~dg------~v~vw~~~~~~~~~~~~~~~~~---~~~h~~~v~~~~~~p~~~~~l~s~~~dg------~i~ 157 (402)
T 2aq5_A 93 NDNVIASGSEDC------TVMVWEIPDGGLVLPLREPVIT---LEGHTKRVGIVAWHPTAQNVLLSAGCDN------VIL 157 (402)
T ss_dssp CTTEEEEEETTS------EEEEEECCTTCCSSCBCSCSEE---EECCSSCEEEEEECSSBTTEEEEEETTS------CEE
T ss_pred CCCEEEEEeCCC------eEEEEEccCCCCccccCCceEE---ecCCCCeEEEEEECcCCCCEEEEEcCCC------EEE
Confidence 567777777643 5788888876431 1110 00 11111222232 22 5777777653 488
Q ss_pred EEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEE
Q 010115 228 MFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL 307 (518)
Q Consensus 228 ~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~ 307 (518)
+||+.+.+....-. .......-.+++...+..+++.|+.++ .+..||+.+.+-......+ ....+....+..
T Consensus 158 iwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~ 229 (402)
T 2aq5_A 158 VWDVGTGAAVLTLG--PDVHPDTIYSVDWSRDGALICTSCRDK-----RVRVIEPRKGTVVAEKDRP-HEGTRPVHAVFV 229 (402)
T ss_dssp EEETTTTEEEEEEC--TTTCCSCEEEEEECTTSSCEEEEETTS-----EEEEEETTTTEEEEEEECS-SCSSSCCEEEEC
T ss_pred EEECCCCCccEEEe--cCCCCCceEEEEECCCCCEEEEEecCC-----cEEEEeCCCCceeeeeccC-CCCCcceEEEEc
Confidence 99998876544320 011122222333333332666666543 5999999887644332111 111112222222
Q ss_pred ECCEEEEEcccCCCCCcCeEEEEECCCCce-EEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEc
Q 010115 308 CGTKWYIAGGGSRKKRHAETLIFDILKGEW-SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSI 386 (518)
Q Consensus 308 ~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~ 386 (518)
-++++++.|.... .-..+.+||+.+..- ....... .......+.+. .+...|++.|+.++ .+.+||+
T Consensus 230 ~~~~~l~~g~~~~--~d~~i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~s-~~~~~l~~~g~~dg----~i~i~d~ 297 (402)
T 2aq5_A 230 SEGKILTTGFSRM--SERQVALWDTKHLEEPLSLQELD-----TSSGVLLPFFD-PDTNIVYLCGKGDS----SIRYFEI 297 (402)
T ss_dssp STTEEEEEEECTT--CCEEEEEEETTBCSSCSEEEECC-----CCSSCEEEEEE-TTTTEEEEEETTCS----CEEEEEE
T ss_pred CCCcEEEEeccCC--CCceEEEEcCccccCCceEEecc-----CCCceeEEEEc-CCCCEEEEEEcCCC----eEEEEEe
Confidence 3677777763211 124588999877442 1111101 11223333443 34456666775443 6888888
Q ss_pred ccCC
Q 010115 387 EKNE 390 (518)
Q Consensus 387 ~~~~ 390 (518)
.+.+
T Consensus 298 ~~~~ 301 (402)
T 2aq5_A 298 TSEA 301 (402)
T ss_dssp CSST
T ss_pred cCCC
Confidence 7765
No 137
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=94.63 E-value=3.5 Score=39.97 Aligned_cols=229 Identities=14% Similarity=0.074 Sum_probs=110.9
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEE-ECCEEEEEcCcCCCCCCceeEE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSGSDRVSVW 176 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~ 176 (518)
++..++.||.+ ..+.++|..+......-.. +...-.+++. -++..++.||.+. .+.
T Consensus 75 d~~~l~s~s~D-----g~v~vWd~~~~~~~~~~~~------------~~~~v~~~~~sp~g~~lasg~~d~------~i~ 131 (354)
T 2pbi_B 75 DKRRIVSSSQD-----GKVIVWDSFTTNKEHAVTM------------PCTWVMACAYAPSGCAIACGGLDN------KCS 131 (354)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTCCEEEEEEC------------SSSCCCEEEECTTSSEEEEESTTS------EEE
T ss_pred CCCEEEEEeCC-----CeEEEEECCCCCcceEEec------------CCCCEEEEEECCCCCEEEEeeCCC------CEE
Confidence 34566667654 3577888776554332221 1111112222 2567777887653 466
Q ss_pred EEECCCCcE-------EEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCC
Q 010115 177 TFDTETECW-------SVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSP 248 (518)
Q Consensus 177 ~yd~~t~~W-------~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~ 248 (518)
.|+.....- ..+.. .. ..-.++... ++..++.|+.+ ..+.++|+.+.+-...- .....
T Consensus 132 v~~~~~~~~~~~~~~~~~~~~----h~-~~v~~~~~~~~~~~l~t~s~D------~~v~lwd~~~~~~~~~~---~~h~~ 197 (354)
T 2pbi_B 132 VYPLTFDKNENMAAKKKSVAM----HT-NYLSACSFTNSDMQILTASGD------GTCALWDVESGQLLQSF---HGHGA 197 (354)
T ss_dssp EEECCCCTTCCSGGGCEEEEE----CS-SCEEEEEECSSSSEEEEEETT------SEEEEEETTTCCEEEEE---ECCSS
T ss_pred EEEEeccccccccccceeeec----cC-CcEEEEEEeCCCCEEEEEeCC------CcEEEEeCCCCeEEEEE---cCCCC
Confidence 666543210 11110 00 011112222 34445555544 34788898877654321 11111
Q ss_pred CCCcEEEEE---CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEcccCCCCC
Q 010115 249 RSNHVAALY---DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKR 323 (518)
Q Consensus 249 r~~~~~~~~---~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~ 323 (518)
. -.+.... ++. +++.|+.++ .+..||+.+.+....-.. ... ...++.+ ++..++.|+.++.
T Consensus 198 ~-v~~~~~~~~~~g~-~l~sgs~Dg-----~v~~wd~~~~~~~~~~~~----h~~-~v~~v~~~p~~~~l~s~s~D~~-- 263 (354)
T 2pbi_B 198 D-VLCLDLAPSETGN-TFVSGGCDK-----KAMVWDMRSGQCVQAFET----HES-DVNSVRYYPSGDAFASGSDDAT-- 263 (354)
T ss_dssp C-EEEEEECCCSSCC-EEEEEETTS-----CEEEEETTTCCEEEEECC----CSS-CEEEEEECTTSSEEEEEETTSC--
T ss_pred C-eEEEEEEeCCCCC-EEEEEeCCC-----eEEEEECCCCcEEEEecC----CCC-CeEEEEEeCCCCEEEEEeCCCe--
Confidence 1 1112222 234 677777654 489999988765433211 111 1122333 5677778876544
Q ss_pred cCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 324 HAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 324 ~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
+.+||+.+..-...... .....+...+.+.. .+.+++.|+.++ .+.+||+.+.+
T Consensus 264 ---v~lwd~~~~~~~~~~~~----~~~~~~~~~~~~s~--~g~~l~~g~~d~----~i~vwd~~~~~ 317 (354)
T 2pbi_B 264 ---CRLYDLRADREVAIYSK----ESIIFGASSVDFSL--SGRLLFAGYNDY----TINVWDVLKGS 317 (354)
T ss_dssp ---EEEEETTTTEEEEEECC----TTCCSCEEEEEECT--TSSEEEEEETTS----CEEEEETTTCS
T ss_pred ---EEEEECCCCcEEEEEcC----CCcccceeEEEEeC--CCCEEEEEECCC----cEEEEECCCCc
Confidence 88999887653332211 11122334444432 234666666543 68888876543
No 138
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=94.61 E-value=3 Score=39.22 Aligned_cols=235 Identities=16% Similarity=0.050 Sum_probs=111.4
Q ss_pred CEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCC---ccceEEEEE--CCEEEEEcCcC---CCCC
Q 010115 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPA---CRGHSLISW--GKKVLLVGGKT---DSGS 170 (518)
Q Consensus 99 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~--~~~iyv~GG~~---~~~~ 170 (518)
+.+|+.+... ..++++|+.+.+-...-.. ..+. ..-+.++.. ++.+|+..... ....
T Consensus 46 ~~l~v~~~~~-----~~v~~~d~~~~~~~~~~~~----------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~ 110 (337)
T 1pby_B 46 RIAYATVNKS-----ESLVKIDLVTGETLGRIDL----------STPEERVKSLFGAALSPDGKTLAIYESPVRLELTHF 110 (337)
T ss_dssp SEEEEEETTT-----TEEEEEETTTCCEEEEEEC----------CBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred CEEEEEeCCC-----CeEEEEECCCCCeEeeEEc----------CCcccccccccceEECCCCCEEEEEecccccccccc
Confidence 4677776532 4689999988754332211 0000 011222322 34777764210 0000
Q ss_pred --CceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-C-CEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCC
Q 010115 171 --DRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-S-SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGP 246 (518)
Q Consensus 171 --~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p 246 (518)
....+++||+.+.+...... .. ..-+.++.. + ..||+.+ +.++++|+.+.+-...-..+..+
T Consensus 111 ~~~~~~i~v~d~~~~~~~~~~~---~~--~~~~~~~~s~dg~~l~~~~---------~~i~~~d~~~~~~~~~~~~~~~~ 176 (337)
T 1pby_B 111 EVQPTRVALYDAETLSRRKAFE---AP--RQITMLAWARDGSKLYGLG---------RDLHVMDPEAGTLVEDKPIQSWE 176 (337)
T ss_dssp EECCCEEEEEETTTTEEEEEEE---CC--SSCCCEEECTTSSCEEEES---------SSEEEEETTTTEEEEEECSTTTT
T ss_pred cccCceEEEEECCCCcEEEEEe---CC--CCcceeEECCCCCEEEEeC---------CeEEEEECCCCcEeeeeeccccC
Confidence 12479999999887654433 11 112233332 3 3466651 45999999887754432211211
Q ss_pred CCCCCcEEEEECCcEEEEEcCCCCC------------------CCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE
Q 010115 247 SPRSNHVAALYDDKNLLIFGGSSKS------------------KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC 308 (518)
Q Consensus 247 ~~r~~~~~~~~~~~~lyv~GG~~~~------------------~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~ 308 (518)
.+. ...-+++.+|+.+..... .....++.+|+.+.+-..+... +......+++..
T Consensus 177 ~~~----~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~~~s 249 (337)
T 1pby_B 177 AET----YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR---IMDVFYFSTAVN 249 (337)
T ss_dssp TTT----BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE---ECSSCEEEEEEC
T ss_pred CCc----eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecC---CCCCceeeEEEC
Confidence 221 111122223322211100 0011588999988765433322 111112223332
Q ss_pred -CC-EEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEc
Q 010115 309 -GT-KWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSI 386 (518)
Q Consensus 309 -~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~ 386 (518)
++ .+|+. ...+++||+.+.+-......+ ..-.+ +.+. .+...||+.++ .+.+.+||+
T Consensus 250 ~dg~~l~~~--------~~~v~~~d~~~~~~~~~~~~~------~~~~~-~~~s-~dg~~l~~~~~-----~~~i~v~d~ 308 (337)
T 1pby_B 250 PAKTRAFGA--------YNVLESFDLEKNASIKRVPLP------HSYYS-VNVS-TDGSTVWLGGA-----LGDLAAYDA 308 (337)
T ss_dssp TTSSEEEEE--------ESEEEEEETTTTEEEEEEECS------SCCCE-EEEC-TTSCEEEEESB-----SSEEEEEET
T ss_pred CCCCEEEEe--------CCeEEEEECCCCcCcceecCC------Cceee-EEEC-CCCCEEEEEcC-----CCcEEEEEC
Confidence 33 55555 156999999887654432211 11122 3333 23345666432 247999998
Q ss_pred ccCC
Q 010115 387 EKNE 390 (518)
Q Consensus 387 ~~~~ 390 (518)
.+.+
T Consensus 309 ~~~~ 312 (337)
T 1pby_B 309 ETLE 312 (337)
T ss_dssp TTCC
T ss_pred cCCc
Confidence 8765
No 139
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=94.59 E-value=1.3 Score=40.77 Aligned_cols=190 Identities=13% Similarity=0.027 Sum_probs=98.5
Q ss_pred EEEEE-CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcCcCCCCC
Q 010115 93 AAAVI-GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGS 170 (518)
Q Consensus 93 ~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~ 170 (518)
+++.. ++.+|+... . +.+++||+........... ....-++++.. ++++|+.....
T Consensus 71 ~i~~~~~g~l~v~~~-~-----~~i~~~d~~~~~~~~~~~~------------~~~~p~~i~~~~~g~l~v~~~~~---- 128 (270)
T 1rwi_B 71 GLAVDGAGTVYVTDF-N-----NRVVTLAAGSNNQTVLPFD------------GLNYPEGLAVDTQGAVYVADRGN---- 128 (270)
T ss_dssp CEEECTTCCEEEEET-T-----TEEEEECTTCSCCEECCCC------------SCSSEEEEEECTTCCEEEEEGGG----
T ss_pred eeEECCCCCEEEEcC-C-----CEEEEEeCCCceEeeeecC------------CcCCCcceEECCCCCEEEEECCC----
Confidence 34443 456888764 2 4688999887654443220 00122344444 56788875432
Q ss_pred CceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCC
Q 010115 171 DRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPR 249 (518)
Q Consensus 171 ~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r 249 (518)
..+++++..+........ .....-..++.. ++++|+.... .+.+.+||+.+..-...... .+ .
T Consensus 129 --~~i~~~~~~~~~~~~~~~----~~~~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~~~~~~~~~~~-~~---~ 192 (270)
T 1rwi_B 129 --NRVVKLAAGSKTQTVLPF----TGLNDPDGVAVDNSGNVYVTDTD------NNRVVKLEAESNNQVVLPFT-DI---T 192 (270)
T ss_dssp --TEEEEECTTCCSCEECCC----CSCCSCCCEEECTTCCEEEEEGG------GTEEEEECTTTCCEEECCCS-SC---C
T ss_pred --CEEEEEECCCceeEeecc----ccCCCceeEEEeCCCCEEEEECC------CCEEEEEecCCCceEeeccc-CC---C
Confidence 258888877665443321 111112334443 4678887432 24588999887664443211 11 1
Q ss_pred CCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCCCcCeEE
Q 010115 250 SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETL 328 (518)
Q Consensus 250 ~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~ 328 (518)
.-..+++..+..+|+....+ +.+.+||+.+..-...... ....-.+++.. +++||+....+ +.|.
T Consensus 193 ~p~~i~~d~~g~l~v~~~~~-----~~v~~~~~~~~~~~~~~~~----~~~~p~~i~~~~~g~l~v~~~~~-----~~v~ 258 (270)
T 1rwi_B 193 APWGIAVDEAGTVYVTEHNT-----NQVVKLLAGSTTSTVLPFT----GLNTPLAVAVDSDRTVYVADRGN-----DRVV 258 (270)
T ss_dssp SEEEEEECTTCCEEEEETTT-----SCEEEECTTCSCCEECCCC----SCSCEEEEEECTTCCEEEEEGGG-----TEEE
T ss_pred CceEEEECCCCCEEEEECCC-----CcEEEEcCCCCcceeeccC----CCCCceeEEECCCCCEEEEECCC-----CEEE
Confidence 12234444443478765332 3599999876543332211 11111233332 56788886543 3477
Q ss_pred EEECCC
Q 010115 329 IFDILK 334 (518)
Q Consensus 329 ~yd~~~ 334 (518)
+|++..
T Consensus 259 ~~~~~~ 264 (270)
T 1rwi_B 259 KLTSLE 264 (270)
T ss_dssp EECCCG
T ss_pred EEcCCC
Confidence 877654
No 140
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=94.57 E-value=6.6 Score=42.87 Aligned_cols=196 Identities=6% Similarity=-0.003 Sum_probs=107.8
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEE-ECCEEEEEcCcCCCCCCceeEE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSGSDRVSVW 176 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~ 176 (518)
++.|||-.. +.+.+||+.+++......... .+...-.+++. -++.|++... ..++
T Consensus 98 ~g~lWigT~-------~Gl~~yd~~~~~f~~~~~~~~---------~~~~~i~~i~~d~~g~lwi~t~--------~gl~ 153 (795)
T 4a2l_A 98 QGRVWIGTR-------DGLSRYDEEKDIFQNFFYEKN---------GKHLQVNGIEEISPEQLLISTP--------EGLI 153 (795)
T ss_dssp TSCEEEEES-------SCEEEEETTTTEEEEECCEET---------TEECCCCEEEEEETTEEEEEET--------TEEE
T ss_pred CCCEEEEeC-------CchheeCCCCCeEEecccccc---------CCCceEEEEEECCCCCEEEEEC--------CceE
Confidence 356887432 358999999988877653210 00000123333 3678887532 2489
Q ss_pred EEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEE
Q 010115 177 TFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 255 (518)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~ 255 (518)
+||..++++..... ..+....-.++.. .++.||+. ... ..+++||+.+.+++... ..+....-.+..
T Consensus 154 ~~~~~~~~~~~~~~--~~~~~~~i~~i~~d~~g~lwig--t~~-----~Gl~~~~~~~~~~~~~~---~~~~~~~i~~i~ 221 (795)
T 4a2l_A 154 MFDIKESKFIDDSF--STAMHKTIASTLYRQGDQIYIG--TST-----DGLYTYSITQKTFEKVI---PILGTKQIQAIL 221 (795)
T ss_dssp EEETTTTEEECSSS--CHHHHTCCEEEEEEETTEEEEE--ESS-----SCEEEEETTTCCEEECC-------CCCEEEEE
T ss_pred EEECCCCEEEeccC--CCCCCcceEEEEECCCCCEEEE--ECC-----CCEEEEeCCCCeEEEec---CCCCCCeeEEEE
Confidence 99999988765432 1111110122333 47888883 211 24889999999988763 111111122233
Q ss_pred EECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCC---CCcceEEEEE-CCEEEEEcccCCCCCcCeEEEEE
Q 010115 256 LYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPS---PRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFD 331 (518)
Q Consensus 256 ~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~---~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd 331 (518)
...+..|+|.. .. +.+++||+.+++++........+. ...-.+++.. ++.|+|.. .. -+.+||
T Consensus 222 ~d~~g~lwigt-~~-----~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~~------Gl~~~~ 288 (795)
T 4a2l_A 222 QQSPTRIWVAT-EG-----AGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGT-FN------DLNIYH 288 (795)
T ss_dssp EEETTEEEEEE-BS-----SCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEE-SS------CEEEEE
T ss_pred EcCCCCEEEEE-CC-----CCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEe-CC------hhheEc
Confidence 33344466642 11 249999999998887754311111 1122233333 56777643 11 288999
Q ss_pred CCCCceEEeec
Q 010115 332 ILKGEWSVAIT 342 (518)
Q Consensus 332 ~~~~~W~~~~~ 342 (518)
+.+.+++.+..
T Consensus 289 ~~~~~~~~~~~ 299 (795)
T 4a2l_A 289 EGTDSFASYSS 299 (795)
T ss_dssp TTTTEEEEECC
T ss_pred CCCCeEEEEec
Confidence 99999988754
No 141
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=94.56 E-value=4.3 Score=40.69 Aligned_cols=111 Identities=13% Similarity=0.098 Sum_probs=56.5
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCC-CCCcceEEE-EEC---CEEEEEcccCCCCcccCcEEEEE
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIP-VARSGHTVV-RAS---SVLILFGGEDGKRRKLNDLHMFD 230 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p-~~r~~~~~~-~~~---~~iyv~GG~~~~~~~~~~~~~yd 230 (518)
+++.++.|+... .++.++..+........ ..+. ....-.+++ .-+ +.+++.|+.+. .+.+||
T Consensus 160 ~~~~l~~~~~~g------~v~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~------~i~vwd 226 (450)
T 2vdu_B 160 DDTTVIIADKFG------DVYSIDINSIPEEKFTQ-EPILGHVSMLTDVHLIKDSDGHQFIITSDRDE------HIKISH 226 (450)
T ss_dssp TSSEEEEEETTS------EEEEEETTSCCCSSCCC-CCSEECSSCEEEEEEEECTTSCEEEEEEETTS------CEEEEE
T ss_pred CCCEEEEEeCCC------cEEEEecCCcccccccc-eeeecccCceEEEEEcCCCCCCcEEEEEcCCC------cEEEEE
Confidence 456666665432 58888887655321000 0011 011112222 235 67788877653 488899
Q ss_pred cCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEE
Q 010115 231 LKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWT 288 (518)
Q Consensus 231 ~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 288 (518)
+.+.+....-..+ ..... .+++..+++ +++.|+.++ .|..||+.+.+..
T Consensus 227 ~~~~~~~~~~~~~--h~~~v-~~~~~sd~~-~l~s~~~d~-----~v~vwd~~~~~~~ 275 (450)
T 2vdu_B 227 YPQCFIVDKWLFG--HKHFV-SSICCGKDY-LLLSAGGDD-----KIFAWDWKTGKNL 275 (450)
T ss_dssp ESCTTCEEEECCC--CSSCE-EEEEECSTT-EEEEEESSS-----EEEEEETTTCCEE
T ss_pred CCCCceeeeeecC--CCCce-EEEEECCCC-EEEEEeCCC-----eEEEEECCCCcEe
Confidence 8776543321111 11111 122233566 666776543 5899998876643
No 142
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=94.55 E-value=1.7 Score=42.72 Aligned_cols=196 Identities=11% Similarity=0.105 Sum_probs=96.6
Q ss_pred CEEEEEcCcCCCCCCceeEEEEECCCCc------EEEeeecCCCCCCCcceEEEEE-C-CEEEEEcccCCCCcccCcEEE
Q 010115 157 KKVLLVGGKTDSGSDRVSVWTFDTETEC------WSVVEAKGDIPVARSGHTVVRA-S-SVLILFGGEDGKRRKLNDLHM 228 (518)
Q Consensus 157 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~------W~~~~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~ 228 (518)
+.+++.|+.+. .+..||..+.+ -..... ........-.+++.. + +.+++.|+.+. .+.+
T Consensus 126 ~~~l~s~~~dg------~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~v~i 192 (416)
T 2pm9_A 126 DNVLASGGNNG------EIFIWDMNKCTESPSNYTPLTPG-QSMSSVDEVISLAWNQSLAHVFASAGSSN------FASI 192 (416)
T ss_dssp TTBEEEECSSS------CEEBCBTTTTSSCTTTCCCBCCC-CSCCSSCCCCEEEECSSCTTEEEEESSSS------CEEE
T ss_pred CCEEEEEcCCC------eEEEEECCCCccccccccccccc-cccCCCCCeeEEEeCCCCCcEEEEEcCCC------CEEE
Confidence 66777777643 57888887764 111100 000111112233332 2 56777777653 4889
Q ss_pred EEcCCCcEEEeecCCCCCC-----CCCCcEEEEECC-cEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCC-CCCc
Q 010115 229 FDLKSLTWLPLHCTGTGPS-----PRSNHVAALYDD-KNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHP-SPRA 301 (518)
Q Consensus 229 yd~~t~~W~~~~~~g~~p~-----~r~~~~~~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p-~~r~ 301 (518)
||+.+.+-...- ..+. ...-.+++...+ ..+++.|+.++. ...+..||+.+..- .+... . ....
T Consensus 193 wd~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--~~~i~~~d~~~~~~-~~~~~---~~~~~~ 263 (416)
T 2pm9_A 193 WDLKAKKEVIHL---SYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN--DPSILIWDLRNANT-PLQTL---NQGHQK 263 (416)
T ss_dssp EETTTTEEEEEE---CCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS--SCCCCEEETTSTTS-CSBCC---CSCCSS
T ss_pred EECCCCCcceEE---eccccccccCCceEEEEECCCCCCEEEEEECCCC--CceEEEEeCCCCCC-CcEEe---ecCccC
Confidence 999887654432 2221 112223333333 236666665431 12588888876421 11111 1 1111
Q ss_pred ceEEEEE---CCEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCC
Q 010115 302 GCCGVLC---GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPS 378 (518)
Q Consensus 302 ~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~ 378 (518)
....+.+ ++++++.|+.++ .+.+||+.+.+-........ .....+.+...+ ..+++.|+.++
T Consensus 264 ~v~~~~~s~~~~~~l~s~~~dg-----~v~~wd~~~~~~~~~~~~~~------~~v~~~~~s~~~-~~~l~s~~~d~--- 328 (416)
T 2pm9_A 264 GILSLDWCHQDEHLLLSSGRDN-----TVLLWNPESAEQLSQFPARG------NWCFKTKFAPEA-PDLFACASFDN--- 328 (416)
T ss_dssp CEEEEEECSSCSSCEEEEESSS-----EEEEECSSSCCEEEEEECSS------SCCCCEEECTTC-TTEEEECCSSS---
T ss_pred ceeEEEeCCCCCCeEEEEeCCC-----CEEEeeCCCCccceeecCCC------CceEEEEECCCC-CCEEEEEecCC---
Confidence 1122333 567788877653 48899988765433221111 111223333222 24677777653
Q ss_pred CcEEEEEcccCC
Q 010115 379 NQVEVLSIEKNE 390 (518)
Q Consensus 379 ~~v~~yd~~~~~ 390 (518)
.+.+||+.+..
T Consensus 329 -~i~iw~~~~~~ 339 (416)
T 2pm9_A 329 -KIEVQTLQNLT 339 (416)
T ss_dssp -EEEEEESCCCC
T ss_pred -cEEEEEccCCC
Confidence 58889887655
No 143
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=94.55 E-value=2.2 Score=40.91 Aligned_cols=201 Identities=14% Similarity=0.135 Sum_probs=98.2
Q ss_pred EEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEe
Q 010115 161 LVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPL 239 (518)
Q Consensus 161 v~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 239 (518)
++|.+.........+|.+|.++++++.+........+ ..++. -+++||+.+.... -..+++||+.+.+++.+
T Consensus 6 ~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p---~~~a~spdg~l~~~~~~~~----~~~v~~~~~~~g~~~~~ 78 (347)
T 3hfq_A 6 LFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNP---TYLALSAKDCLYSVDKEDD----EGGIAAWQIDGQTAHKL 78 (347)
T ss_dssp EEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCC---CCEEECTTCEEEEEEEETT----EEEEEEEEEETTEEEEE
T ss_pred EEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCc---ceEEEccCCeEEEEEecCC----CceEEEEEecCCcEEEe
Confidence 4454443333344688899999988775431111111 22333 3567777654321 24689999988887766
Q ss_pred ecCCCCCCCCCCcEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcC-CCeEEEeec---CCCCCCCCc----ceEEEEE-C
Q 010115 240 HCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFE-TMIWTRIKI---RGFHPSPRA----GCCGVLC-G 309 (518)
Q Consensus 240 ~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~-~~~W~~v~~---~~~~p~~r~----~~~~~~~-~ 309 (518)
... ....... ..++.. +++.||+.+..+ +.+..|++. +...+.+.. .+..|.+|. -++++.. +
T Consensus 79 ~~~-~~~~~~p-~~~a~spdg~~l~~~~~~~-----~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spd 151 (347)
T 3hfq_A 79 NTV-VAPGTPP-AYVAVDEARQLVYSANYHK-----GTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPD 151 (347)
T ss_dssp EEE-EEESCCC-SEEEEETTTTEEEEEETTT-----TEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTT
T ss_pred eee-ecCCCCC-EEEEECCCCCEEEEEeCCC-----CEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCC
Confidence 421 0011111 233343 455566654222 357888874 334443332 222222221 2223332 5
Q ss_pred CEEEEEcccCCCCCcCeEEEEECC-CCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEccc
Q 010115 310 TKWYIAGGGSRKKRHAETLIFDIL-KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (518)
Q Consensus 310 ~~iyv~GG~~~~~~~~~v~~yd~~-~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~ 388 (518)
+++|+.+... +.+++||+. +++...+...... ...+-..+.+. ++...||+.+... +.+.+|++..
T Consensus 152 g~l~v~~~~~-----~~v~~~~~~~~g~~~~~~~~~~~---~g~~p~~~~~s-pdg~~l~v~~~~~----~~v~v~~~~~ 218 (347)
T 3hfq_A 152 NRLAVIDLGS-----DKVYVYNVSDAGQLSEQSVLTME---AGFGPRHLVFS-PDGQYAFLAGELS----SQIASLKYDT 218 (347)
T ss_dssp SCEEEEETTT-----TEEEEEEECTTSCEEEEEEEECC---TTCCEEEEEEC-TTSSEEEEEETTT----TEEEEEEEET
T ss_pred CcEEEEeCCC-----CEEEEEEECCCCcEEEeeeEEcC---CCCCCceEEEC-CCCCEEEEEeCCC----CEEEEEEecC
Confidence 6677765332 358889987 5666544321111 11112234443 3334677665432 3567776653
No 144
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=94.54 E-value=4.5 Score=43.53 Aligned_cols=262 Identities=11% Similarity=0.031 Sum_probs=125.4
Q ss_pred EECCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCce
Q 010115 96 VIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRV 173 (518)
Q Consensus 96 ~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~ 173 (518)
-.++.+|.+-- ........+|+.+.....|+.+-.... +............+ +++.++++.... +....
T Consensus 81 ~dG~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~lld~~~-------l~~~~~~~~~~~~~SPDg~~la~~~~~~-G~~~~ 151 (710)
T 2xdw_A 81 KKGKRYFYFYN-TGLQNQRVLYVQDSLEGEARVFLDPNI-------LSDDGTVALRGYAFSEDGEYFAYGLSAS-GSDWV 151 (710)
T ss_dssp EETTEEEEEEE-CSSCSSCEEEEESSTTSCCEEEECGGG-------GCTTSCEEEEEEEECTTSSEEEEEEEET-TCSCE
T ss_pred EECCEEEEEEE-cCCceEEEEEEEcCCCCCcEEEECHHH-------hccCCCEEEEEEEECCCCCEEEEEEcCC-CCceE
Confidence 34555554422 111223467777776667765533110 00000011112222 455444443221 22334
Q ss_pred eEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCC----------cccCcEEEEEcCCCcEE--Eee
Q 010115 174 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKR----------RKLNDLHMFDLKSLTWL--PLH 240 (518)
Q Consensus 174 ~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~----------~~~~~~~~yd~~t~~W~--~~~ 240 (518)
.++++|+.+++...... +.... ...+.. +++.++++..+... .....++++++.+.+.+ .+.
T Consensus 152 ~i~v~d~~tg~~~~~~~----~~~~~-~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~ 226 (710)
T 2xdw_A 152 TIKFMKVDGAKELPDVL----ERVKF-SCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCA 226 (710)
T ss_dssp EEEEEETTTTEEEEEEE----EEECS-CCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEE
T ss_pred EEEEEECCCCCCCcccc----cCccc-ceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEe
Confidence 79999999998876432 11111 223332 44444444333220 12356999999877632 221
Q ss_pred cCCCCCCCCCCcEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCC------C--eEEEeecCCCCCCCCcceEEEEECCE
Q 010115 241 CTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFET------M--IWTRIKIRGFHPSPRAGCCGVLCGTK 311 (518)
Q Consensus 241 ~~g~~p~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~------~--~W~~v~~~~~~p~~r~~~~~~~~~~~ 311 (518)
. ....+......... +++ .+++.........++++.+|+.+ . .++.+... .... .......++.
T Consensus 227 -~-~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~---~~~~-~~~~s~dg~~ 299 (710)
T 2xdw_A 227 -E-FPDEPKWMGGAELSDDGR-YVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN---FEGE-YDYVTNEGTV 299 (710)
T ss_dssp -C-CTTCTTCEEEEEECTTSC-EEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS---SSSC-EEEEEEETTE
T ss_pred -c-cCCCCeEEEEEEEcCCCC-EEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCC---CCcE-EEEEeccCCE
Confidence 0 11112222333343 345 34443322222256899999976 4 68887643 1111 1122234778
Q ss_pred EEEEcccCCCCCcCeEEEEECCCC---ceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEccc
Q 010115 312 WYIAGGGSRKKRHAETLIFDILKG---EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (518)
Q Consensus 312 iyv~GG~~~~~~~~~v~~yd~~~~---~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~ 388 (518)
||+.+.... ....++.+|+.+. .|+.+.... .......+.+. +++.|++....++ ...++++++.+
T Consensus 300 l~~~s~~~~--~~~~l~~~d~~~~~~~~~~~l~~~~-----~~~~~~~~~~~--~~~~lv~~~~~~g--~~~l~~~~~~~ 368 (710)
T 2xdw_A 300 FTFKTNRHS--PNYRLINIDFTDPEESKWKVLVPEH-----EKDVLEWVACV--RSNFLVLCYLHDV--KNTLQLHDLAT 368 (710)
T ss_dssp EEEEECTTC--TTCEEEEEETTSCCGGGCEEEECCC-----SSCEEEEEEEE--TTTEEEEEEEETT--EEEEEEEETTT
T ss_pred EEEEECCCC--CCCEEEEEeCCCCCcccceeccCCC-----CCCeEEEEEEE--cCCEEEEEEEECC--EEEEEEEECCC
Confidence 888865432 2367999999876 588876321 10111222222 2355665554433 23678888744
Q ss_pred C
Q 010115 389 N 389 (518)
Q Consensus 389 ~ 389 (518)
.
T Consensus 369 g 369 (710)
T 2xdw_A 369 G 369 (710)
T ss_dssp C
T ss_pred C
Confidence 3
No 145
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=94.52 E-value=1.2 Score=43.91 Aligned_cols=208 Identities=13% Similarity=0.070 Sum_probs=98.5
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CC-EEEEEcCcCCCCCCceeE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GK-KVLLVGGKTDSGSDRVSV 175 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v 175 (518)
++.+++.|+.+ ..+.+||..+............ . +......-.+++.. ++ .+++.|+.+. .+
T Consensus 93 ~~~~l~s~s~d-----g~v~vw~~~~~~~~~~~~~~~~--~---~~~h~~~v~~~~~~p~~~~~l~s~~~dg------~i 156 (402)
T 2aq5_A 93 NDNVIASGSED-----CTVMVWEIPDGGLVLPLREPVI--T---LEGHTKRVGIVAWHPTAQNVLLSAGCDN------VI 156 (402)
T ss_dssp CTTEEEEEETT-----SEEEEEECCTTCCSSCBCSCSE--E---EECCSSCEEEEEECSSBTTEEEEEETTS------CE
T ss_pred CCCEEEEEeCC-----CeEEEEEccCCCCccccCCceE--E---ecCCCCeEEEEEECcCCCCEEEEEcCCC------EE
Confidence 45677777754 3588888877643110000000 0 00001111122222 22 5777777643 58
Q ss_pred EEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEE
Q 010115 176 WTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (518)
Q Consensus 176 ~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~ 254 (518)
..||+.+.+....-... .....-.+++.. ++.+++.|+.+ ..+.+||+.+.+-...-. ..........+
T Consensus 157 ~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~ 226 (402)
T 2aq5_A 157 LVWDVGTGAAVLTLGPD--VHPDTIYSVDWSRDGALICTSCRD------KRVRVIEPRKGTVVAEKD--RPHEGTRPVHA 226 (402)
T ss_dssp EEEETTTTEEEEEECTT--TCCSCEEEEEECTTSSCEEEEETT------SEEEEEETTTTEEEEEEE--CSSCSSSCCEE
T ss_pred EEEECCCCCccEEEecC--CCCCceEEEEECCCCCEEEEEecC------CcEEEEeCCCCceeeeec--cCCCCCcceEE
Confidence 89999988654332100 011111222322 46667777654 348899998776443210 11111112334
Q ss_pred EEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeE-EEeecCCCCCCCCcceEEEEE--CCEEEEEcccCCCCCcCeEEEEE
Q 010115 255 ALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIW-TRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFD 331 (518)
Q Consensus 255 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W-~~v~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd 331 (518)
+...+..+++.|.... .-..+..||+.+..- ...... .......+.+.. +..+++.|+.++ .+.+||
T Consensus 227 ~~~~~~~~l~~g~~~~--~d~~i~iwd~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~g~~dg-----~i~i~d 296 (402)
T 2aq5_A 227 VFVSEGKILTTGFSRM--SERQVALWDTKHLEEPLSLQEL---DTSSGVLLPFFDPDTNIVYLCGKGDS-----SIRYFE 296 (402)
T ss_dssp EECSTTEEEEEEECTT--CCEEEEEEETTBCSSCSEEEEC---CCCSSCEEEEEETTTTEEEEEETTCS-----CEEEEE
T ss_pred EEcCCCcEEEEeccCC--CCceEEEEcCccccCCceEEec---cCCCceeEEEEcCCCCEEEEEEcCCC-----eEEEEE
Confidence 4555554666662100 124689999876431 111111 111112223333 345666665443 388899
Q ss_pred CCCCc--eEEee
Q 010115 332 ILKGE--WSVAI 341 (518)
Q Consensus 332 ~~~~~--W~~~~ 341 (518)
+.+.+ ...+.
T Consensus 297 ~~~~~~~~~~l~ 308 (402)
T 2aq5_A 297 ITSEAPFLHYLS 308 (402)
T ss_dssp ECSSTTCEEEEE
T ss_pred ecCCCcceEeec
Confidence 88766 44443
No 146
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=94.42 E-value=2.6 Score=39.73 Aligned_cols=194 Identities=10% Similarity=0.063 Sum_probs=94.3
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCc
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 235 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 235 (518)
++.+++.|+.++ .+..||..+..-...-. .............++.+++.|+.+. .+.+||+.+.+
T Consensus 24 ~~~~l~s~~~dg------~v~lWd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~s~d~------~i~vwd~~~~~ 88 (304)
T 2ynn_A 24 TEPWVLTTLYSG------RVELWNYETQVEVRSIQ---VTETPVRAGKFIARKNWIIVGSDDF------RIRVFNYNTGE 88 (304)
T ss_dssp SSSEEEEEETTS------EEEEEETTTTEEEEEEE---CCSSCEEEEEEEGGGTEEEEEETTS------EEEEEETTTCC
T ss_pred CCCEEEEEcCCC------cEEEEECCCCceeEEee---ccCCcEEEEEEeCCCCEEEEECCCC------EEEEEECCCCc
Confidence 456667777543 57888988876433221 1111111222223456667776543 47888987765
Q ss_pred EEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE--CCEEE
Q 010115 236 WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWY 313 (518)
Q Consensus 236 W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~--~~~iy 313 (518)
-...- .. ....-.+++...+..+++.|+.++ .+..||.++.. ....... .....-.+++.. ++.++
T Consensus 89 ~~~~~---~~-h~~~v~~~~~~~~~~~l~sgs~D~-----~v~lWd~~~~~-~~~~~~~--~h~~~v~~v~~~p~~~~~l 156 (304)
T 2ynn_A 89 KVVDF---EA-HPDYIRSIAVHPTKPYVLSGSDDL-----TVKLWNWENNW-ALEQTFE--GHEHFVMCVAFNPKDPSTF 156 (304)
T ss_dssp EEEEE---EC-CSSCEEEEEECSSSSEEEEEETTS-----CEEEEEGGGTT-EEEEEEC--CCCSCEEEEEECTTCTTEE
T ss_pred EEEEE---eC-CCCcEEEEEEcCCCCEEEEECCCC-----eEEEEECCCCc-chhhhhc--ccCCcEEEEEECCCCCCEE
Confidence 33221 00 111122344444443677777654 48888886542 2211110 111111222222 35677
Q ss_pred EEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 314 IAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 314 v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
+.|+.++ .+.++|+.+..-....... .......+.+....+..+++.|+.++ .+.++|+.+.+
T Consensus 157 ~sgs~D~-----~v~iwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~l~s~s~D~----~i~iWd~~~~~ 219 (304)
T 2ynn_A 157 ASGCLDR-----TVKVWSLGQSTPNFTLTTG-----QERGVNYVDYYPLPDKPYMITASDDL----TIKIWDYQTKS 219 (304)
T ss_dssp EEEETTS-----EEEEEETTCSSCSEEEECC-----CTTCEEEEEECCSTTCCEEEEEETTS----EEEEEETTTTE
T ss_pred EEEeCCC-----eEEEEECCCCCccceeccC-----CcCcEEEEEEEEcCCCCEEEEEcCCC----eEEEEeCCCCc
Confidence 8887654 3888887654321111100 11122233332222334566676653 57888876654
No 147
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=94.38 E-value=5.4 Score=42.18 Aligned_cols=130 Identities=15% Similarity=0.117 Sum_probs=71.0
Q ss_pred eEEEEECCEEEEEcCcCCCCCCCcEEEEEc-CCC--cEEEcccccccCCCCCCCCCCC--ccceEEEE--ECCE----EE
Q 010115 92 HAAAVIGNKMIVVGGESGNGLLDDVQVLNF-DRF--SWTAASSKLYLSPSSLPLKIPA--CRGHSLIS--WGKK----VL 160 (518)
Q Consensus 92 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~-~~~--~W~~~~~~~~~~~~~~~~~~~~--r~~~~~~~--~~~~----iy 160 (518)
.+-++.++.||+.... .+.++.+|. .+. .|+.-....... .+... ....+.++ .+++ ||
T Consensus 56 ~tP~v~~g~vyv~~~~-----~~~v~AlD~~~tG~~lW~~~~~~~~~~-----~~~~~~~~~~~g~av~p~~g~~~~rV~ 125 (599)
T 1w6s_A 56 GAPLVVDGKMYIHTSF-----PNNTFALGLDDPGTILWQDKPKQNPAA-----RAVACCDLVNRGLAYWPGDGKTPALIL 125 (599)
T ss_dssp SCCEEETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGGG-----GGGCSSCSCCCCCEEECCCSSSCCEEE
T ss_pred eccEEECCEEEEEeCC-----CCEEEEEeCCCCCcEEEEECCCCCccc-----cccccccccccceEEEecCCcceeEEE
Confidence 4456679999998753 246899999 664 698754321000 00000 01123344 5666 87
Q ss_pred EEcCcCCCCCCceeEEEEECCCCc--EEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCc--E
Q 010115 161 LVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--W 236 (518)
Q Consensus 161 v~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W 236 (518)
+.... ..++.+|.+|.+ |+.-..... .......+-++.++.||+-.+.... ..-..++.||.++.+ |
T Consensus 126 v~t~d-------g~l~AlDa~TG~~~W~~~~~~~~-~~~~~~ssP~v~~g~V~vg~~g~e~-g~~g~v~A~D~~TG~~~W 196 (599)
T 1w6s_A 126 KTQLD-------GNVAALNAETGETVWKVENSDIK-VGSTLTIAPYVVKDKVIIGSSGAEL-GVRGYLTAYDVKTGEQVW 196 (599)
T ss_dssp EECTT-------SEEEEEETTTCCEEEEEECCCGG-GTCBCCSCCEEETTEEEECCBCGGG-TCCCEEEEEETTTCCEEE
T ss_pred EEcCC-------CEEEEEECCCCCEEEeecCCCCC-ccceeecCCEEECCEEEEEeccccc-CCCCeEEEEECCCCcEEE
Confidence 75321 268999998876 886432100 0001122334568888764322111 123568999998764 8
Q ss_pred EEee
Q 010115 237 LPLH 240 (518)
Q Consensus 237 ~~~~ 240 (518)
+.-.
T Consensus 197 ~~~~ 200 (599)
T 1w6s_A 197 RAYA 200 (599)
T ss_dssp EEES
T ss_pred EEcC
Confidence 7653
No 148
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=94.37 E-value=2 Score=42.06 Aligned_cols=203 Identities=16% Similarity=0.100 Sum_probs=93.7
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCC--cEEEeeecCCCC-CCCcceEEEEE--CCEEEEEcccCCCCcccCcEEEEE
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETE--CWSVVEAKGDIP-VARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFD 230 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~p-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd 230 (518)
++.+++.|+.+. .+..||..+. ....+.. +. ....-.++... ++.+++.|+.+. .+.+||
T Consensus 78 ~~~~l~~~~~dg------~v~vw~~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~l~s~~~dg------~v~iwd 142 (416)
T 2pm9_A 78 NNKIIAGALDNG------SLELYSTNEANNAINSMAR---FSNHSSSVKTVKFNAKQDNVLASGGNNG------EIFIWD 142 (416)
T ss_dssp SSSCEEEEESSS------CEEEECCSSTTSCCCEEEE---CCCSSSCCCEEEECSSSTTBEEEECSSS------CEEBCB
T ss_pred CCCeEEEEccCC------eEEEeecccccccccchhh---ccCCccceEEEEEcCCCCCEEEEEcCCC------eEEEEE
Confidence 456666766543 4778888761 1212221 11 11112233332 256777777553 377888
Q ss_pred cCCCc------EEEeecCCCCCCCCCCcEEEEECC-cEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCC--CCc
Q 010115 231 LKSLT------WLPLHCTGTGPSPRSNHVAALYDD-KNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPS--PRA 301 (518)
Q Consensus 231 ~~t~~------W~~~~~~g~~p~~r~~~~~~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~--~r~ 301 (518)
+.+.+ -.... .........-.+++...+ ..+++.|+.++ .+..||+.+.+-...-....... ...
T Consensus 143 ~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 216 (416)
T 2pm9_A 143 MNKCTESPSNYTPLTP-GQSMSSVDEVISLAWNQSLAHVFASAGSSN-----FASIWDLKAKKEVIHLSYTSPNSGIKQQ 216 (416)
T ss_dssp TTTTSSCTTTCCCBCC-CCSCCSSCCCCEEEECSSCTTEEEEESSSS-----CEEEEETTTTEEEEEECCCCCSSCCCCC
T ss_pred CCCCcccccccccccc-ccccCCCCCeeEEEeCCCCCcEEEEEcCCC-----CEEEEECCCCCcceEEeccccccccCCc
Confidence 87654 11110 000111112223444433 33777777654 49999998876544332210000 111
Q ss_pred ceEEEEE-C-CEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCC
Q 010115 302 GCCGVLC-G-TKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSN 379 (518)
Q Consensus 302 ~~~~~~~-~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~ 379 (518)
-.+++.. + ..+++.|+.++. ...+.+||+.+..-.. .... .........+.+.. ....+++.|+.++
T Consensus 217 v~~~~~~~~~~~~l~~~~~d~~--~~~i~~~d~~~~~~~~-~~~~---~~~~~~v~~~~~s~-~~~~~l~s~~~dg---- 285 (416)
T 2pm9_A 217 LSVVEWHPKNSTRVATATGSDN--DPSILIWDLRNANTPL-QTLN---QGHQKGILSLDWCH-QDEHLLLSSGRDN---- 285 (416)
T ss_dssp EEEEEECSSCTTEEEEEECCSS--SCCCCEEETTSTTSCS-BCCC---SCCSSCEEEEEECS-SCSSCEEEEESSS----
T ss_pred eEEEEECCCCCCEEEEEECCCC--CceEEEEeCCCCCCCc-EEee---cCccCceeEEEeCC-CCCCeEEEEeCCC----
Confidence 2222222 3 357777765431 1247888987643110 0000 00111223333332 1234566776643
Q ss_pred cEEEEEcccCC
Q 010115 380 QVEVLSIEKNE 390 (518)
Q Consensus 380 ~v~~yd~~~~~ 390 (518)
.+.+||+.+.+
T Consensus 286 ~v~~wd~~~~~ 296 (416)
T 2pm9_A 286 TVLLWNPESAE 296 (416)
T ss_dssp EEEEECSSSCC
T ss_pred CEEEeeCCCCc
Confidence 57888876654
No 149
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.33 E-value=1.9 Score=42.01 Aligned_cols=203 Identities=10% Similarity=0.033 Sum_probs=99.7
Q ss_pred ceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCE-EEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCC
Q 010115 172 RVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSV-LILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPR 249 (518)
Q Consensus 172 ~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r 249 (518)
...++.+|+.+.+...+.. .+ ....+....- ++. |++.. ..........++.+|+.+.++..+. . ..+.
T Consensus 167 ~~~l~~~d~~~g~~~~~~~---~~-~~~~~~~~sp~dg~~l~~~~-~~~~~~~~~~l~~~d~~~~~~~~l~---~-~~~~ 237 (396)
T 3c5m_A 167 TCRLIKVDIETGELEVIHQ---DT-AWLGHPIYRPFDDSTVGFCH-EGPHDLVDARMWLVNEDGSNVRKIK---E-HAEG 237 (396)
T ss_dssp CEEEEEEETTTCCEEEEEE---ES-SCEEEEEEETTEEEEEEEEE-CSCSSSCSCCCEEEETTSCCCEESS---C-CCTT
T ss_pred cceEEEEECCCCcEEeecc---CC-cccccceECCCCCCEEEEEe-cCCCCCCCceEEEEECCCCceeEee---c-cCCC
Confidence 3579999999988777653 11 1222222222 244 44443 2221112357999999888777764 2 1111
Q ss_pred -CCcEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCC------
Q 010115 250 -SNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSR------ 320 (518)
Q Consensus 250 -~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~------ 320 (518)
.....+.. +++.|++ ...........++++|+.+.+.+.+... +. .. .+..- +++++++.+...
T Consensus 238 ~~~~~~~~spdg~~l~~-~~~~~~~~~~~l~~~d~~~g~~~~l~~~---~~--~~-~~~s~~dg~~l~~~~~~~p~~~~~ 310 (396)
T 3c5m_A 238 ESCTHEFWIPDGSAMAY-VSYFKGQTDRVIYKANPETLENEEVMVM---PP--CS-HLMSNFDGSLMVGDGCDAPVDVAD 310 (396)
T ss_dssp EEEEEEEECTTSSCEEE-EEEETTTCCEEEEEECTTTCCEEEEEEC---CS--EE-EEEECSSSSEEEEEECCC------
T ss_pred ccccceEECCCCCEEEE-EecCCCCccceEEEEECCCCCeEEeeeC---CC--CC-CCccCCCCceEEEecCCcceeecc
Confidence 11122333 3443333 3222111123499999998887777543 21 11 22223 666666654220
Q ss_pred -----CCCcCeEEEEECCCCceEEeecCCCCCC----CCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCCc
Q 010115 321 -----KKRHAETLIFDILKGEWSVAITSPSSSV----TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 391 (518)
Q Consensus 321 -----~~~~~~v~~yd~~~~~W~~~~~~~~~~~----~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~w 391 (518)
......++++|+.+.+...+........ ..........+.. +...|+......+ ...++.+++.+.++
T Consensus 311 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~s~~~~--~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 311 ADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTP-NDDGVLFTSDFEG--VPAIYIADVPESYK 387 (396)
T ss_dssp ----CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECT-TSSEEEEEECTTS--SCEEEEEECCTTCC
T ss_pred ccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEcc-CCCeEEEEecCCC--CceEEEEEEccccc
Confidence 1123579999999888777654321100 0000011122222 3344544443332 34788888877665
Q ss_pred cc
Q 010115 392 SM 393 (518)
Q Consensus 392 ~~ 393 (518)
..
T Consensus 388 ~~ 389 (396)
T 3c5m_A 388 HL 389 (396)
T ss_dssp --
T ss_pred cc
Confidence 43
No 150
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=94.31 E-value=3.3 Score=38.37 Aligned_cols=195 Identities=6% Similarity=-0.005 Sum_probs=98.7
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCC-CCcceEEEEE--CCEEEEEcccCCCCcccCcEEEEEcC
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPV-ARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLK 232 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~ 232 (518)
++.+|+..... ..+.+||+.......+...+..+. ...-+.+++. ++.+|+.+... ...+.+||..
T Consensus 40 ~g~l~v~~~~~------~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~-----~~~i~~~d~~ 108 (286)
T 1q7f_A 40 QNDIIVADTNN------HRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP-----THQIQIYNQY 108 (286)
T ss_dssp TCCEEEEEGGG------TEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG-----GCEEEEECTT
T ss_pred CCCEEEEECCC------CEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC-----CCEEEEECCC
Confidence 46788875432 258899988554444332111111 1122344442 57899886321 2458889965
Q ss_pred CCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCE
Q 010115 233 SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK 311 (518)
Q Consensus 233 t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~ 311 (518)
...-..+.. +....-..+++..+..+|+....+ +.+++||++......+...+... .-.+.+.. +++
T Consensus 109 g~~~~~~~~----~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~~~~g~~~~~~~~~~~~~---~p~~i~~~~~g~ 176 (286)
T 1q7f_A 109 GQFVRKFGA----TILQHPRGVTVDNKGRIIVVECKV-----MRVIIFDQNGNVLHKFGCSKHLE---FPNGVVVNDKQE 176 (286)
T ss_dssp SCEEEEECT----TTCSCEEEEEECTTSCEEEEETTT-----TEEEEECTTSCEEEEEECTTTCS---SEEEEEECSSSE
T ss_pred CcEEEEecC----ccCCCceEEEEeCCCCEEEEECCC-----CEEEEEcCCCCEEEEeCCCCccC---CcEEEEECCCCC
Confidence 444433321 111112334444343488875432 46999998766555553221111 11233332 578
Q ss_pred EEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEccc
Q 010115 312 WYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (518)
Q Consensus 312 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~ 388 (518)
+|+..... ..+++||+.......+.... . ...-..+++.. ++.||+....+. ..|.+||+..
T Consensus 177 l~v~~~~~-----~~i~~~~~~g~~~~~~~~~g-~----~~~p~~i~~d~--~G~l~v~~~~~~---~~i~~~~~~g 238 (286)
T 1q7f_A 177 IFISDNRA-----HCVKVFNYEGQYLRQIGGEG-I----TNYPIGVGINS--NGEILIADNHNN---FNLTIFTQDG 238 (286)
T ss_dssp EEEEEGGG-----TEEEEEETTCCEEEEESCTT-T----SCSEEEEEECT--TCCEEEEECSSS---CEEEEECTTS
T ss_pred EEEEECCC-----CEEEEEcCCCCEEEEEccCC-c----cCCCcEEEECC--CCCEEEEeCCCC---EEEEEECCCC
Confidence 99876432 45899998766544443210 0 01122333432 345777654321 1688888654
No 151
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=94.25 E-value=0.28 Score=48.11 Aligned_cols=186 Identities=12% Similarity=0.050 Sum_probs=92.0
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCceeE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSV 175 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v 175 (518)
+++.++.|+.+ ..+.+||..+.+-...-. .....-.+++.. ++.+++.||.+. .+
T Consensus 150 dg~~l~sgs~d-----g~v~iwd~~~~~~~~~~~------------~h~~~v~~v~~s~~~~~~~~s~~~dg------~v 206 (357)
T 4g56_B 150 DGTQAVSGGKD-----FSVKVWDLSQKAVLKSYN------------AHSSEVNCVAACPGKDTIFLSCGEDG------RI 206 (357)
T ss_dssp SSSEEEEEETT-----SCEEEEETTTTEEEEEEC------------CCSSCEEEEEECTTCSSCEEEEETTS------CE
T ss_pred CCCEEEEEeCC-----CeEEEEECCCCcEEEEEc------------CCCCCEEEEEEccCCCceeeeeccCC------ce
Confidence 45566667654 357888988765433211 101111222222 345677777643 47
Q ss_pred EEEECCCCcEEEeeecCCCCCCCcc-eEEEEE--CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCc
Q 010115 176 WTFDTETECWSVVEAKGDIPVARSG-HTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 252 (518)
Q Consensus 176 ~~yd~~t~~W~~~~~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~ 252 (518)
..||+.+.+-..... ....... .+++.. ++.+++.|+.+. .+.+||+.+.+-...- ..... .-.
T Consensus 207 ~~wd~~~~~~~~~~~---~~~~~~~v~~v~~sp~~~~~la~g~~d~------~i~~wd~~~~~~~~~~---~~~~~-~v~ 273 (357)
T 4g56_B 207 LLWDTRKPKPATRID---FCASDTIPTSVTWHPEKDDTFACGDETG------NVSLVNIKNPDSAQTS---AVHSQ-NIT 273 (357)
T ss_dssp EECCTTSSSCBCBCC---CTTCCSCEEEEEECTTSTTEEEEEESSS------CEEEEESSCGGGCEEE---CCCSS-CEE
T ss_pred EEEECCCCceeeeee---eccccccccchhhhhcccceEEEeeccc------ceeEEECCCCcEeEEE---eccce-eEE
Confidence 788887765322211 1111111 222222 356777776554 3788998765422111 11111 111
Q ss_pred EEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEE--ECCEEEEEcccCCCCCcCeEEE
Q 010115 253 VAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL--CGTKWYIAGGGSRKKRHAETLI 329 (518)
Q Consensus 253 ~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~ 329 (518)
+++.. ++..+++.|+.++ .|..||.++.+-... .+ ....-.+++. .++++++.||.++. +.+
T Consensus 274 ~l~~sp~~~~~lasgs~D~-----~i~iwd~~~~~~~~~--~~---H~~~V~~vafsP~d~~~l~s~s~Dg~-----v~i 338 (357)
T 4g56_B 274 GLAYSYHSSPFLASISEDC-----TVAVLDADFSEVFRD--LS---HRDFVTGVAWSPLDHSKFTTVGWDHK-----VLH 338 (357)
T ss_dssp EEEECSSSSCCEEEEETTS-----CEEEECTTSCEEEEE--CC---CSSCEEEEEECSSSTTEEEEEETTSC-----EEE
T ss_pred EEEEcCCCCCEEEEEeCCC-----EEEEEECCCCcEeEE--CC---CCCCEEEEEEeCCCCCEEEEEcCCCe-----EEE
Confidence 22332 3433666676544 488999887754433 21 1111122222 25678888887654 777
Q ss_pred EECCC
Q 010115 330 FDILK 334 (518)
Q Consensus 330 yd~~~ 334 (518)
+|+.+
T Consensus 339 W~~~~ 343 (357)
T 4g56_B 339 HHLPS 343 (357)
T ss_dssp EECC-
T ss_pred EECCC
Confidence 77643
No 152
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=94.23 E-value=3.5 Score=38.31 Aligned_cols=226 Identities=10% Similarity=0.023 Sum_probs=103.7
Q ss_pred ECCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCceeE
Q 010115 97 IGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSV 175 (518)
Q Consensus 97 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v 175 (518)
.++..++.|+.+ ..+.+||..+..-...... . ...-.+++.. ++.+++.|+.+. .+
T Consensus 27 ~~~~~l~s~~~d-----g~v~vw~~~~~~~~~~~~~-----------~-~~~v~~~~~~~~~~~l~~~~~dg------~i 83 (313)
T 3odt_A 27 VDDSKVASVSRD-----GTVRLWSKDDQWLGTVVYT-----------G-QGFLNSVCYDSEKELLLFGGKDT------MI 83 (313)
T ss_dssp EETTEEEEEETT-----SEEEEEEESSSEEEEEEEE-----------C-SSCEEEEEEETTTTEEEEEETTS------CE
T ss_pred cCCCEEEEEEcC-----CcEEEEECCCCEEEEEeec-----------C-CccEEEEEECCCCCEEEEecCCC------eE
Confidence 445556666644 4688899877654333221 0 1111222222 566677776643 46
Q ss_pred EEEECCCCc-EEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEE
Q 010115 176 WTFDTETEC-WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (518)
Q Consensus 176 ~~yd~~t~~-W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~ 254 (518)
..|+..... ...+.. +......-.....++.+++.|+.++ .+.+||.......... ... ...++
T Consensus 84 ~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~l~~~~~d~------~i~~~d~~~~~~~~~~-----~~~-~v~~~ 148 (313)
T 3odt_A 84 NGVPLFATSGEDPLYT---LIGHQGNVCSLSFQDGVVISGSWDK------TAKVWKEGSLVYNLQA-----HNA-SVWDA 148 (313)
T ss_dssp EEEETTCCTTSCC-CE---ECCCSSCEEEEEEETTEEEEEETTS------EEEEEETTEEEEEEEC-----CSS-CEEEE
T ss_pred EEEEeeecCCCCcccc---hhhcccCEEEEEecCCEEEEEeCCC------CEEEEcCCcEEEeccc-----CCC-ceeEE
Confidence 666665432 111111 1111111122223555666666543 3777773222222211 111 11122
Q ss_pred EEE--CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEE-ECCEEEEEcccCCCCCcCeEEEEE
Q 010115 255 ALY--DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGTKWYIAGGGSRKKRHAETLIFD 331 (518)
Q Consensus 255 ~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd 331 (518)
+.. ++. +++.|+.++ .+..||.... -..+.. +......+++. -++. ++.|+.++ .+.+||
T Consensus 149 ~~~~~~~~-~l~~~~~d~-----~i~i~d~~~~-~~~~~~----~~~~~i~~~~~~~~~~-~~~~~~dg-----~i~i~d 211 (313)
T 3odt_A 149 KVVSFSEN-KFLTASADK-----TIKLWQNDKV-IKTFSG----IHNDVVRHLAVVDDGH-FISCSNDG-----LIKLVD 211 (313)
T ss_dssp EEEETTTT-EEEEEETTS-----CEEEEETTEE-EEEECS----SCSSCEEEEEEEETTE-EEEEETTS-----EEEEEE
T ss_pred EEccCCCC-EEEEEECCC-----CEEEEecCce-EEEEec----cCcccEEEEEEcCCCe-EEEccCCC-----eEEEEE
Confidence 222 456 666666543 4888883322 222221 11111222333 3667 66666543 489999
Q ss_pred CCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 332 ILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 332 ~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
+.+.+-....... ......+.+... +. ++.|+.++ .+.+||+.+.+
T Consensus 212 ~~~~~~~~~~~~~------~~~i~~~~~~~~--~~-l~~~~~dg----~v~iwd~~~~~ 257 (313)
T 3odt_A 212 MHTGDVLRTYEGH------ESFVYCIKLLPN--GD-IVSCGEDR----TVRIWSKENGS 257 (313)
T ss_dssp TTTCCEEEEEECC------SSCEEEEEECTT--SC-EEEEETTS----EEEEECTTTCC
T ss_pred CCchhhhhhhhcC------CceEEEEEEecC--CC-EEEEecCC----EEEEEECCCCc
Confidence 8876543322111 112233334322 23 55666543 68888877665
No 153
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=94.18 E-value=1.7 Score=41.38 Aligned_cols=112 Identities=11% Similarity=0.106 Sum_probs=58.1
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE---CCEEEEEcCcCCCCCCcee
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW---GKKVLLVGGKTDSGSDRVS 174 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~ 174 (518)
+++.++.|+.+ ..+.+||+.+.....+... ......-.+++.. ++.+++.|+.+. .
T Consensus 24 ~g~~lasgs~D-----~~v~lwd~~~~~~~~~~~l----------~gH~~~V~~v~~~~~~~~~~l~s~s~D~------~ 82 (316)
T 3bg1_A 24 YGTRLATCSSD-----RSVKIFDVRNGGQILIADL----------RGHEGPVWQVAWAHPMYGNILASCSYDR------K 82 (316)
T ss_dssp GGCEEEEEETT-----TEEEEEEEETTEEEEEEEE----------ECCSSCEEEEEECCGGGSSCEEEEETTS------C
T ss_pred CCCEEEEEeCC-----CeEEEEEecCCCcEEEEEE----------cCCCccEEEEEeCCCCCCCEEEEEECCC------E
Confidence 45666777654 3578888877654333221 0000011222221 256777777643 5
Q ss_pred EEEEECCCCcEEEeeecCCCCCC-CcceEEEEE-C--CEEEEEcccCCCCcccCcEEEEEcCCC-cEEEe
Q 010115 175 VWTFDTETECWSVVEAKGDIPVA-RSGHTVVRA-S--SVLILFGGEDGKRRKLNDLHMFDLKSL-TWLPL 239 (518)
Q Consensus 175 v~~yd~~t~~W~~~~~~~~~p~~-r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~ 239 (518)
+..+|+.+.+|..... +... ..-.+++.. + +.+++.|+.+. .+.++|..+. .|...
T Consensus 83 v~iWd~~~~~~~~~~~---~~~h~~~V~~v~~~p~~~g~~lasgs~D~------~i~lwd~~~~~~~~~~ 143 (316)
T 3bg1_A 83 VIIWREENGTWEKSHE---HAGHDSSVNSVCWAPHDYGLILACGSSDG------AISLLTYTGEGQWEVK 143 (316)
T ss_dssp EEEECCSSSCCCEEEE---ECCCSSCCCEEEECCTTTCSCEEEECSSS------CEEEEEECSSSCEEEC
T ss_pred EEEEECCCCcceEEEE---ccCCCCceEEEEECCCCCCcEEEEEcCCC------CEEEEecCCCCCccee
Confidence 7888998887765443 1111 111223332 2 45677777654 3677777664 57543
No 154
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=94.02 E-value=7.1 Score=41.79 Aligned_cols=130 Identities=11% Similarity=0.069 Sum_probs=73.1
Q ss_pred eEEEEECCEEEEEcCcCCCCCCCcEEEEEcCCC--cEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCC
Q 010115 92 HAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG 169 (518)
Q Consensus 92 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~ 169 (518)
.+-++.++.||+... ...++.+|..+. .|+.-......... .........+.++.+++||+....
T Consensus 60 ~~P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~v~~~d---- 126 (668)
T 1kv9_A 60 ATPLFHDGVIYTSMS------WSRVIAVDAASGKELWRYDPEVAKVKAR---TSCCDAVNRGVALWGDKVYVGTLD---- 126 (668)
T ss_dssp CCCEEETTEEEEEEG------GGEEEEEETTTCCEEEEECCCCCGGGGG---GCTTCSCCCCCEEEBTEEEEECTT----
T ss_pred cCCEEECCEEEEECC------CCeEEEEECCCChhceEECCCCCccccc---cccccCCccceEEECCEEEEEcCC----
Confidence 344668999999765 246899998765 68875431100000 000000122345578898886421
Q ss_pred CCceeEEEEECCCCc--EEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCc--EEEe
Q 010115 170 SDRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPL 239 (518)
Q Consensus 170 ~~~~~v~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~ 239 (518)
..++.+|.+|++ |+...... ........+-++.++.+|+-.+.... ..-..++.||.++.+ |+.-
T Consensus 127 ---g~l~alD~~tG~~~W~~~~~~~-~~~~~~~~~P~v~~~~v~vg~~~~~~-~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 127 ---GRLIALDAKTGKAIWSQQTTDP-AKPYSITGAPRVVKGKVIIGNGGAEY-GVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp ---SEEEEEETTTCCEEEEEECSCT-TSSCBCCSCCEEETTEEEECCBCTTT-CCBCEEEEEETTTCCEEEEEE
T ss_pred ---CEEEEEECCCCCEeeeeccCCC-CCcceecCCCEEECCEEEEeCCCCCc-CCCCEEEEEECCCCcEEEEec
Confidence 369999999876 88754211 01112223345678888874332111 123579999998764 8764
No 155
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=93.98 E-value=7.1 Score=40.95 Aligned_cols=125 Identities=10% Similarity=0.159 Sum_probs=69.0
Q ss_pred EEEEECCEEEEEcCcCCCCCCceeEEEEEC-CCCc--EEEeeecCC--CCCC---CcceEEEEECCEEEEEcccCCCCcc
Q 010115 151 SLISWGKKVLLVGGKTDSGSDRVSVWTFDT-ETEC--WSVVEAKGD--IPVA---RSGHTVVRASSVLILFGGEDGKRRK 222 (518)
Q Consensus 151 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~-~t~~--W~~~~~~~~--~p~~---r~~~~~~~~~~~iyv~GG~~~~~~~ 222 (518)
+-++.++.||+..... ..++.+|. .+.+ |+.-..... .+.. ....+.++.+++||+...
T Consensus 57 ~P~v~~g~vyv~~~~~------~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------- 123 (571)
T 2ad6_A 57 APLVIGDMMYVHSAFP------NNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA------- 123 (571)
T ss_dssp CCEEETTEEEEECSTT------TCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------
T ss_pred ccEEECCEEEEEeCCC------CEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC-------
Confidence 3356799999986621 25999999 7765 987432110 0000 112345667899988632
Q ss_pred cCcEEEEEcCCC--cEEEeecCCCCCCC-CCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC--eEEEee
Q 010115 223 LNDLHMFDLKSL--TWLPLHCTGTGPSP-RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM--IWTRIK 291 (518)
Q Consensus 223 ~~~~~~yd~~t~--~W~~~~~~g~~p~~-r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~v~ 291 (518)
-..++.+|.++. .|+.-.. ..+.. ....+.++.++. +|+-.+......-..++.||.++. .|+.-.
T Consensus 124 dg~l~alD~~tG~~~W~~~~~--~~~~~~~~~~~P~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 124 NGHLLALDAKTGKINWEVEVC--DPKVGSTLTQAPFVAKDT-VLMGCSGAELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp TSEEEEEETTTCCEEEEEECC--CGGGTCBCCSCCEEETTE-EEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEECCCCCEEEEecCC--CCCccceeccCCEEECCE-EEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence 245899999876 4876421 11100 111223345555 665432211112357999999765 487543
No 156
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=93.92 E-value=1.7 Score=41.49 Aligned_cols=234 Identities=12% Similarity=0.087 Sum_probs=112.0
Q ss_pred CEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--C---CEEEEEcCcCCCCCCce
Q 010115 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--G---KKVLLVGGKTDSGSDRV 173 (518)
Q Consensus 99 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~---~~iyv~GG~~~~~~~~~ 173 (518)
..+++.|+... .-..+.+||..+.......... ....-..+.+ + +.+++.|+.+.
T Consensus 31 ~~l~~~~s~~~--~d~~v~iw~~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~~~l~~~~~dg------ 90 (357)
T 3i2n_A 31 AKFVTMGNFAR--GTGVIQLYEIQHGDLKLLREIE------------KAKPIKCGTFGATSLQQRYLATGDFGG------ 90 (357)
T ss_dssp SEEEEEEC--C--CCEEEEEEEECSSSEEEEEEEE------------ESSCEEEEECTTCCTTTCCEEEEETTS------
T ss_pred ceEEEecCccC--CCcEEEEEeCCCCcccceeeec------------ccCcEEEEEEcCCCCCCceEEEecCCC------
Confidence 35666776421 1246888999887765443210 0011122222 2 36777776543
Q ss_pred eEEEEECCCCc--EEEeeecCCCCCCCcceEEEE-------ECCEEEEEcccCCCCcccCcEEEEEcCCCc--EEEeecC
Q 010115 174 SVWTFDTETEC--WSVVEAKGDIPVARSGHTVVR-------ASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCT 242 (518)
Q Consensus 174 ~v~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~-------~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~ 242 (518)
.+..||..+.+ -..+.. ... .-.++.. -++.+++.|+.++ .+.+||+.+.. ...+...
T Consensus 91 ~i~iwd~~~~~~~~~~~~~---~~~--~v~~~~~~~~~~~s~~~~~l~~~~~d~------~i~vwd~~~~~~~~~~~~~~ 159 (357)
T 3i2n_A 91 NLHIWNLEAPEMPVYSVKG---HKE--IINAIDGIGGLGIGEGAPEIVTGSRDG------TVKVWDPRQKDDPVANMEPV 159 (357)
T ss_dssp CEEEECTTSCSSCSEEECC---CSS--CEEEEEEESGGGCC-CCCEEEEEETTS------CEEEECTTSCSSCSEEECCC
T ss_pred eEEEEeCCCCCccEEEEEe---ccc--ceEEEeeccccccCCCccEEEEEeCCC------eEEEEeCCCCCCcceecccc
Confidence 57888887765 222221 111 1111111 2455667776543 47888887654 3333210
Q ss_pred CCCCCCCCCcEEEE-----ECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE----CCEEE
Q 010115 243 GTGPSPRSNHVAAL-----YDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC----GTKWY 313 (518)
Q Consensus 243 g~~p~~r~~~~~~~-----~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~----~~~iy 313 (518)
.....+...+++. -++. +++.|+.++ .+..||+.+.+-...... .....++... ++..+
T Consensus 160 -~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~d~-----~i~i~d~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~l 227 (357)
T 3i2n_A 160 -QGENKRDCWTVAFGNAYNQEER-VVCAGYDNG-----DIKLFDLRNMALRWETNI-----KNGVCSLEFDRKDISMNKL 227 (357)
T ss_dssp -TTSCCCCEEEEEEECCCC-CCC-EEEEEETTS-----EEEEEETTTTEEEEEEEC-----SSCEEEEEESCSSSSCCEE
T ss_pred -CCCCCCceEEEEEEeccCCCCC-EEEEEccCC-----eEEEEECccCceeeecCC-----CCceEEEEcCCCCCCCCEE
Confidence 1111112222221 2445 666665543 599999988764333222 1112233333 45677
Q ss_pred EEcccCCCCCcCeEEEEECCCCc----eEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccC
Q 010115 314 IAGGGSRKKRHAETLIFDILKGE----WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (518)
Q Consensus 314 v~GG~~~~~~~~~v~~yd~~~~~----W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~ 389 (518)
+.|+.++ .+.+||+.+.. +..... .........+.+. ++...+++.|+.++ .+.+||+.+.
T Consensus 228 ~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~-~~~~~~l~~~~~dg----~i~iwd~~~~ 292 (357)
T 3i2n_A 228 VATSLEG-----KFHVFDMRTQHPTKGFASVSE-----KAHKSTVWQVRHL-PQNRELFLTAGGAG----GLHLWKYEYP 292 (357)
T ss_dssp EEEESTT-----EEEEEEEEEEETTTEEEEEEE-----ECCSSCEEEEEEE-TTEEEEEEEEETTS----EEEEEEEECC
T ss_pred EEECCCC-----eEEEEeCcCCCcccceeeecc-----CCCcCCEEEEEEC-CCCCcEEEEEeCCC----cEEEeecCCC
Confidence 7776543 47778765432 110000 0111122333333 23333777777654 6888888765
Q ss_pred C
Q 010115 390 E 390 (518)
Q Consensus 390 ~ 390 (518)
.
T Consensus 293 ~ 293 (357)
T 3i2n_A 293 I 293 (357)
T ss_dssp S
T ss_pred c
Confidence 5
No 157
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=93.88 E-value=3.8 Score=38.42 Aligned_cols=114 Identities=14% Similarity=0.144 Sum_probs=55.4
Q ss_pred CEEEEEcccCCCCcccCcEEEEEcCCC--cEEEeecCCCCCCCC-CCcEEEEECC---cEEEEEcCCCCCCCCCcEEEEE
Q 010115 208 SVLILFGGEDGKRRKLNDLHMFDLKSL--TWLPLHCTGTGPSPR-SNHVAALYDD---KNLLIFGGSSKSKTLNDLYSLD 281 (518)
Q Consensus 208 ~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~g~~p~~r-~~~~~~~~~~---~~lyv~GG~~~~~~~~~v~~yd 281 (518)
+.+++.|+.+.. +.+||+.+. .|.... .+..-. .-.+++...+ ..+++.|+.++ .+..+|
T Consensus 170 ~~~l~sgs~D~~------v~lwd~~~~~~~~~~~~---~l~~H~~~V~~v~~sp~~~~~~~las~s~D~-----~v~iWd 235 (297)
T 2pm7_B 170 SRKFVTGGADNL------VKIWKYNSDAQTYVLES---TLEGHSDWVRDVAWSPTVLLRSYMASVSQDR-----TCIIWT 235 (297)
T ss_dssp CCEEEEEETTSC------EEEEEEETTTTEEEEEE---EECCCSSCEEEEEECCCCSSSEEEEEEETTS-----CEEEEE
T ss_pred cceEEEEcCCCc------EEEEEEcCCCceEEEEE---EecCCCCceEEEEECCCCCCceEEEEEECCC-----cEEEEE
Confidence 356777776543 566666543 354443 111111 1122233332 23677777654 377777
Q ss_pred cCC--CeEEEeecCCCCCCCCcceEEEE-ECCEEEEEcccCCCCCcCeEEEEECC-CCceEEee
Q 010115 282 FET--MIWTRIKIRGFHPSPRAGCCGVL-CGTKWYIAGGGSRKKRHAETLIFDIL-KGEWSVAI 341 (518)
Q Consensus 282 ~~~--~~W~~v~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~-~~~W~~~~ 341 (518)
+++ ..|........ .......+++. -++++++.||.++. +.+++.. .+.|..+.
T Consensus 236 ~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~las~~~D~~-----v~lw~~~~~g~w~~~~ 293 (297)
T 2pm7_B 236 QDNEQGPWKKTLLKEE-KFPDVLWRASWSLSGNVLALSGGDNK-----VTLWKENLEGKWEPAG 293 (297)
T ss_dssp ESSTTSCCEEEESSSS-CCSSCEEEEEECSSSCCEEEEETTSC-----EEEEEECTTSCEEEC-
T ss_pred eCCCCCccceeeeecc-cCCCcEEEEEECCCCCEEEEEcCCCc-----EEEEEECCCCcEEecc
Confidence 755 34654322100 11111222222 26777777776543 6666654 46788764
No 158
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=93.80 E-value=3.5 Score=42.82 Aligned_cols=151 Identities=8% Similarity=0.035 Sum_probs=74.3
Q ss_pred EEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCC--CCCcEEEEECC-cEEEEEcCCCCCCCCCcEEEEEcCCCe
Q 010115 210 LILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSP--RSNHVAALYDD-KNLLIFGGSSKSKTLNDLYSLDFETMI 286 (518)
Q Consensus 210 iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~--r~~~~~~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~~~~ 286 (518)
+++.|+.+ ..+.+||..+.+-...- ..... ..-.+++...+ ..+++.|+.++ .+..||+.+.+
T Consensus 175 ~l~~~~~d------~~v~vwd~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~ 240 (615)
T 1pgu_A 175 RSMTVGDD------GSVVFYQGPPFKFSASD---RTHHKQGSFVRDVEFSPDSGEFVITVGSDR-----KISCFDGKSGE 240 (615)
T ss_dssp EEEEEETT------TEEEEEETTTBEEEEEE---CSSSCTTCCEEEEEECSTTCCEEEEEETTC-----CEEEEETTTCC
T ss_pred EEEEEeCC------CcEEEEeCCCcceeeee---cccCCCCceEEEEEECCCCCCEEEEEeCCC-----eEEEEECCCCC
Confidence 67776654 34788888765543321 11111 02223444444 33667676544 59999988766
Q ss_pred EEEeecCCC-CCCCCcceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCcc
Q 010115 287 WTRIKIRGF-HPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKD 365 (518)
Q Consensus 287 W~~v~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~ 365 (518)
....-.... ...... .++...+++.++.++.+ ..+.+||+.+.+.......+.. . .......+... + +
T Consensus 241 ~~~~~~~~~~~~~~~v-~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~~~~~~~~~-~-~~~~~~~~~~~--~-~ 309 (615)
T 1pgu_A 241 FLKYIEDDQEPVQGGI-FALSWLDSQKFATVGAD-----ATIRVWDVTTSKCVQKWTLDKQ-Q-LGNQQVGVVAT--G-N 309 (615)
T ss_dssp EEEECCBTTBCCCSCE-EEEEESSSSEEEEEETT-----SEEEEEETTTTEEEEEEECCTT-C-GGGCEEEEEEE--E-T
T ss_pred EeEEecccccccCCce-EEEEEcCCCEEEEEcCC-----CcEEEEECCCCcEEEEEcCCCC-c-ccCceeEEEeC--C-C
Confidence 443321000 011111 12222277777777754 3488999987765443322111 0 11112222222 2 2
Q ss_pred EEEEEcCCCCCCCCcEEEEEcccC
Q 010115 366 FLVAFGGIKKEPSNQVEVLSIEKN 389 (518)
Q Consensus 366 ~l~v~GG~~~~~~~~v~~yd~~~~ 389 (518)
..++.|+.++ .+.+||+.+.
T Consensus 310 ~~l~~~~~~g----~i~~~d~~~~ 329 (615)
T 1pgu_A 310 GRIISLSLDG----TLNFYELGHD 329 (615)
T ss_dssp TEEEEEETTS----CEEEEETTEE
T ss_pred CeEEEEECCC----CEEEEECCCC
Confidence 3456666543 5778887653
No 159
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=93.80 E-value=4.4 Score=37.96 Aligned_cols=107 Identities=12% Similarity=0.126 Sum_probs=53.0
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE---CCEEEEEcCcCCCCCCcee
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW---GKKVLLVGGKTDSGSDRVS 174 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~ 174 (518)
+++.++.|+.+ ..+.+||......+.+... ......-.+++.. ++.+++.|+.+. .
T Consensus 20 ~g~~las~s~D-----~~v~iw~~~~~~~~~~~~l----------~gH~~~V~~v~~s~~~~g~~l~s~s~D~------~ 78 (297)
T 2pm7_B 20 YGKRMATCSSD-----KTIKIFEVEGETHKLIDTL----------TGHEGPVWRVDWAHPKFGTILASCSYDG------K 78 (297)
T ss_dssp TSSEEEEEETT-----SCEEEEEBCSSCBCCCEEE----------CCCSSCEEEEEECCGGGCSEEEEEETTT------E
T ss_pred CCCEEEEEeCC-----CEEEEEecCCCCcEEEEEE----------ccccCCeEEEEecCCCcCCEEEEEcCCC------E
Confidence 45566777754 3578888765433222221 0001011122221 256777777653 5
Q ss_pred EEEEECCCCcEEEeeecCCCCCCCc-ceEEEEEC---CEEEEEcccCCCCcccCcEEEEEcCCC
Q 010115 175 VWTFDTETECWSVVEAKGDIPVARS-GHTVVRAS---SVLILFGGEDGKRRKLNDLHMFDLKSL 234 (518)
Q Consensus 175 v~~yd~~t~~W~~~~~~~~~p~~r~-~~~~~~~~---~~iyv~GG~~~~~~~~~~~~~yd~~t~ 234 (518)
+..+|+.+.+|..+.. +..... -.+++... +.+++.|+.+. .+.+||+.+.
T Consensus 79 v~iWd~~~~~~~~~~~---~~~h~~~v~~v~~~p~~~g~~l~s~s~d~------~v~~wd~~~~ 133 (297)
T 2pm7_B 79 VMIWKEENGRWSQIAV---HAVHSASVNSVQWAPHEYGPMLLVASSDG------KVSVVEFKEN 133 (297)
T ss_dssp EEEEEBSSSCBCCCEE---ECCCSSCEEEEEECCGGGCSEEEEEETTS------EEEEEEBCSS
T ss_pred EEEEEcCCCceEEEEE---eecCCCceeEEEeCcCCCCcEEEEEECCC------cEEEEEecCC
Confidence 7888988877755432 111111 11222221 45666666543 3667777654
No 160
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=93.77 E-value=0.71 Score=46.40 Aligned_cols=193 Identities=9% Similarity=0.043 Sum_probs=95.1
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCcccCcEEEEEcCC
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS 233 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t 233 (518)
++.+++.|+.++ .|..||..+..-..... .......-.+++.. ++.+++.|+.++ .+.++|+++
T Consensus 131 ~~~~lasGs~dg------~i~lWd~~~~~~~~~~~--~~gH~~~V~~l~f~p~~~~~l~s~s~D~------~v~iwd~~~ 196 (435)
T 4e54_B 131 HPSTVAVGSKGG------DIMLWNFGIKDKPTFIK--GIGAGGSITGLKFNPLNTNQFYASSMEG------TTRLQDFKG 196 (435)
T ss_dssp CTTCEEEEETTS------CEEEECSSCCSCCEEEC--CCSSSCCCCEEEECSSCTTEEEEECSSS------CEEEEETTS
T ss_pred CCCEEEEEeCCC------EEEEEECCCCCceeEEE--ccCCCCCEEEEEEeCCCCCEEEEEeCCC------EEEEeeccC
Confidence 456777887654 57888887765433321 01111112233332 456677777654 377889988
Q ss_pred CcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE---CC
Q 010115 234 LTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC---GT 310 (518)
Q Consensus 234 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~---~~ 310 (518)
.....+... -.......++....+..+++.|+.++ .|..+|++...-..+.. ......++.+ +.
T Consensus 197 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~g~~dg-----~i~~wd~~~~~~~~~~~------h~~~v~~v~~~p~~~ 263 (435)
T 4e54_B 197 NILRVFASS--DTINIWFCSLDVSASSRMVVTGDNVG-----NVILLNMDGKELWNLRM------HKKKVTHVALNPCCD 263 (435)
T ss_dssp CEEEEEECC--SSCSCCCCCEEEETTTTEEEEECSSS-----BEEEEESSSCBCCCSBC------CSSCEEEEEECTTCS
T ss_pred CceeEEecc--CCCCccEEEEEECCCCCEEEEEeCCC-----cEeeeccCcceeEEEec------ccceEEeeeecCCCc
Confidence 776655421 11122222344444433777887654 58889986543211111 0111122333 34
Q ss_pred EEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccC
Q 010115 311 KWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (518)
Q Consensus 311 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~ 389 (518)
.+++.|+.++. +.+||+.+..-..... ....-......+.+. . ++..++.|+.++ .|.+||+.+.
T Consensus 264 ~~~~s~s~d~~-----v~iwd~~~~~~~~~~~---~~~~h~~~v~~~~~s-p-dg~~l~s~~~D~----~i~iwd~~~~ 328 (435)
T 4e54_B 264 WFLATASVDQT-----VKIWDLRQVRGKASFL---YSLPHRHPVNAACFS-P-DGARLLTTDQKS----EIRVYSASQW 328 (435)
T ss_dssp SEEEEEETTSB-----CCEEETTTCCSSSCCS---BCCBCSSCEEECCBC-T-TSSEEEEEESSS----CEEEEESSSS
T ss_pred eEEEEecCcce-----eeEEecccccccceEE---EeeeccccccceeEC-C-CCCeeEEEcCCC----EEEEEECCCC
Confidence 56777765543 6678876643221100 000001111222222 2 233556676654 5788887654
No 161
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=93.77 E-value=5.4 Score=38.92 Aligned_cols=197 Identities=12% Similarity=0.164 Sum_probs=96.1
Q ss_pred CEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcce--EEEE--ECCEEEEEcccCCCCcccCcEEEEEcC
Q 010115 157 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGH--TVVR--ASSVLILFGGEDGKRRKLNDLHMFDLK 232 (518)
Q Consensus 157 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~--~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~ 232 (518)
+..++.|+.+. .+..||+.+.+-..... ...+...... ++.. .++.+++.|+.+.. +.+||+.
T Consensus 170 ~~~l~s~s~D~------~i~~wd~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~------v~~wd~~ 236 (380)
T 3iz6_a 170 ETRLITGSGDQ------TCVLWDVTTGQRISIFG-SEFPSGHTADVLSLSINSLNANMFISGSCDTT------VRLWDLR 236 (380)
T ss_dssp SSCEEEECTTS------CEEEECTTTCCEEEEEC-CCSSSSCCSCEEEEEECSSSCCEEEEEETTSC------EEEEETT
T ss_pred CCEEEEECCCC------cEEEEEcCCCcEEEEee-cccCCCCccCeEEEEeecCCCCEEEEEECCCe------EEEEECC
Confidence 34455555432 57888998877543321 0122211111 1222 25678888887653 7788876
Q ss_pred CC--cEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCC--CCC-cceEEEE
Q 010115 233 SL--TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHP--SPR-AGCCGVL 307 (518)
Q Consensus 233 t~--~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p--~~r-~~~~~~~ 307 (518)
.. .-..+. .... .-.+++...+...++.|+.++ .+..||+.+..-...-...... ... ...+++.
T Consensus 237 ~~~~~~~~~~----~h~~-~v~~v~~~p~~~~l~s~s~D~-----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 306 (380)
T 3iz6_a 237 ITSRAVRTYH----GHEG-DINSVKFFPDGQRFGTGSDDG-----TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAF 306 (380)
T ss_dssp TTCCCCEEEC----CCSS-CCCEEEECTTSSEEEEECSSS-----CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEE
T ss_pred CCCcceEEEC----CcCC-CeEEEEEecCCCeEEEEcCCC-----eEEEEECCCCcEEEEecccccccccccCceEEEEE
Confidence 32 122221 1111 112344444433777887665 4889999876543332211000 001 1122222
Q ss_pred -ECCEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEc
Q 010115 308 -CGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSI 386 (518)
Q Consensus 308 -~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~ 386 (518)
.++++++.|+.++ .+.+||..+.+-......... . -......+.+.. ++..++.|+.++ .+.++++
T Consensus 307 s~~g~~l~~g~~dg-----~i~vwd~~~~~~~~~~~~~~~-~-h~~~v~~l~~s~--dg~~l~sgs~D~----~i~iW~~ 373 (380)
T 3iz6_a 307 SISGRLLFAGYSNG-----DCYVWDTLLAEMVLNLGTLQN-S-HEGRISCLGLSS--DGSALCTGSWDK----NLKIWAF 373 (380)
T ss_dssp CSSSSEEEEECTTS-----CEEEEETTTCCEEEEECCSCS-S-CCCCCCEEEECS--SSSEEEEECTTS----CEEEEEC
T ss_pred CCCCCEEEEEECCC-----CEEEEECCCCceEEEEecccC-C-CCCceEEEEECC--CCCEEEEeeCCC----CEEEEec
Confidence 2677777776554 489999877654332110000 0 011123334432 234677787765 4677776
Q ss_pred ccC
Q 010115 387 EKN 389 (518)
Q Consensus 387 ~~~ 389 (518)
...
T Consensus 374 ~~~ 376 (380)
T 3iz6_a 374 SGH 376 (380)
T ss_dssp CSS
T ss_pred CCC
Confidence 543
No 162
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=93.70 E-value=7.7 Score=40.96 Aligned_cols=125 Identities=11% Similarity=0.130 Sum_probs=66.7
Q ss_pred EEEEECCEEEEEcCcCCCCCCceeEEEEEC-CCCc--EEEeeecCC--CCCC---CcceEEEE--ECCE----EEEEccc
Q 010115 151 SLISWGKKVLLVGGKTDSGSDRVSVWTFDT-ETEC--WSVVEAKGD--IPVA---RSGHTVVR--ASSV----LILFGGE 216 (518)
Q Consensus 151 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~-~t~~--W~~~~~~~~--~p~~---r~~~~~~~--~~~~----iyv~GG~ 216 (518)
+-++.++.||+.... ...++.+|. .+.+ |+.-..... .+.. ....+.++ .+++ ||+...
T Consensus 57 tP~v~~g~vyv~~~~------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~- 129 (599)
T 1w6s_A 57 APLVVDGKMYIHTSF------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL- 129 (599)
T ss_dssp CCEEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT-
T ss_pred ccEEECCEEEEEeCC------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC-
Confidence 345669999998663 125899999 7775 987543110 0001 11223445 5666 877522
Q ss_pred CCCCcccCcEEEEEcCCCc--EEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCC-CCCCCCcEEEEEcCCCe--EEEee
Q 010115 217 DGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSS-KSKTLNDLYSLDFETMI--WTRIK 291 (518)
Q Consensus 217 ~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~-~~~~~~~v~~yd~~~~~--W~~v~ 291 (518)
-..++.+|.++.+ |+.-... ..+......+-++.++. +|+ |... .......|+.||.++.+ |+.-.
T Consensus 130 ------dg~l~AlDa~TG~~~W~~~~~~-~~~~~~~~ssP~v~~g~-V~v-g~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 130 ------DGNVAALNAETGETVWKVENSD-IKVGSTLTIAPYVVKDK-VII-GSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp ------TSEEEEEETTTCCEEEEEECCC-GGGTCBCCSCCEEETTE-EEE-CCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred ------CCEEEEEECCCCCEEEeecCCC-CCccceeecCCEEECCE-EEE-EecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 1458899987764 8764210 00000111223445555 555 4321 11123579999998654 87654
No 163
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=93.60 E-value=2.3 Score=39.96 Aligned_cols=195 Identities=13% Similarity=0.074 Sum_probs=95.5
Q ss_pred CEEEEEcCcCCCCCCCcEEEEEcCCCcEEEc-ccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcCcC---------C
Q 010115 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAA-SSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKT---------D 167 (518)
Q Consensus 99 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~---------~ 167 (518)
+.+|+.... +.+++||+. .+...+ .... ...+...-+.++.. ++.+|+..... .
T Consensus 83 g~l~v~~~~------~~l~~~d~~-g~~~~~~~~~~--------~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~ 147 (314)
T 1pjx_A 83 NQLFVADMR------LGLLVVQTD-GTFEEIAKKDS--------EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRS 147 (314)
T ss_dssp SEEEEEETT------TEEEEEETT-SCEEECCSBCT--------TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBT
T ss_pred CcEEEEECC------CCEEEEeCC-CCEEEEEeccC--------CCccccCCcCEEECCCCCEEEEecCccccccccccc
Confidence 678887641 358999998 766655 3210 00111112334443 57788765432 1
Q ss_pred CCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE----C-C-EEEEEcccCCCCcccCcEEEEEcC-CCcEEEee
Q 010115 168 SGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA----S-S-VLILFGGEDGKRRKLNDLHMFDLK-SLTWLPLH 240 (518)
Q Consensus 168 ~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~----~-~-~iyv~GG~~~~~~~~~~~~~yd~~-t~~W~~~~ 240 (518)
.......+++||+. .+...+... ... ...++.. . + .||+.... .+.+++||+. +.++....
T Consensus 148 ~~~~~~~l~~~~~~-g~~~~~~~~--~~~---~~~i~~~~~~d~dg~~l~v~~~~------~~~i~~~~~~~~g~~~~~~ 215 (314)
T 1pjx_A 148 MQEKFGSIYCFTTD-GQMIQVDTA--FQF---PNGIAVRHMNDGRPYQLIVAETP------TKKLWSYDIKGPAKIENKK 215 (314)
T ss_dssp TSSSCEEEEEECTT-SCEEEEEEE--ESS---EEEEEEEECTTSCEEEEEEEETT------TTEEEEEEEEETTEEEEEE
T ss_pred ccCCCCeEEEECCC-CCEEEeccC--CCC---cceEEEecccCCCCCEEEEEECC------CCeEEEEECCCCCccccce
Confidence 11123579999987 665554321 111 1233444 3 3 57776432 2468889876 44443221
Q ss_pred cCCCCCCC--CCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeE-EEeecCCCCCCCCcceEEEEE-CCE-EEEE
Q 010115 241 CTGTGPSP--RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIW-TRIKIRGFHPSPRAGCCGVLC-GTK-WYIA 315 (518)
Q Consensus 241 ~~g~~p~~--r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W-~~v~~~~~~p~~r~~~~~~~~-~~~-iyv~ 315 (518)
.....+.. ..-..++...+..+|+.... .+.|.+||+++.+. ..+. . +. ..-.+++.. +++ ||+.
T Consensus 216 ~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~-----~~~i~~~d~~~g~~~~~~~-~---~~-~~~~~i~~~~dg~~l~v~ 285 (314)
T 1pjx_A 216 VWGHIPGTHEGGADGMDFDEDNNLLVANWG-----SSHIEVFGPDGGQPKMRIR-C---PF-EKPSNLHFKPQTKTIFVT 285 (314)
T ss_dssp EEEECCCCSSCEEEEEEEBTTCCEEEEEET-----TTEEEEECTTCBSCSEEEE-C---SS-SCEEEEEECTTSSEEEEE
T ss_pred EEEECCCCCCCCCCceEECCCCCEEEEEcC-----CCEEEEEcCCCCcEeEEEe-C---CC-CCceeEEECCCCCEEEEE
Confidence 10012211 11123344444447776421 13699999985432 2222 1 21 112233322 444 8876
Q ss_pred cccCCCCCcCeEEEEECCCC
Q 010115 316 GGGSRKKRHAETLIFDILKG 335 (518)
Q Consensus 316 GG~~~~~~~~~v~~yd~~~~ 335 (518)
.... +.+++|++...
T Consensus 286 ~~~~-----~~l~~~~~~~~ 300 (314)
T 1pjx_A 286 EHEN-----NAVWKFEWQRN 300 (314)
T ss_dssp ETTT-----TEEEEEECSSC
T ss_pred eCCC-----CeEEEEeCCCC
Confidence 5432 45899998764
No 164
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=93.59 E-value=3 Score=39.90 Aligned_cols=191 Identities=13% Similarity=0.137 Sum_probs=92.8
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCC--CcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCce
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDR--FSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRV 173 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~--~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~ 173 (518)
+++.++.|+.+ ..+.++|... ..++.+... .... ..-..+.+ ++.+++.|+.+.
T Consensus 118 ~g~~las~s~D-----~~v~iwd~~~~~~~~~~~~~~----------~~h~-~~v~~v~~~p~~~~l~s~s~D~------ 175 (330)
T 2hes_X 118 DGYYLATCSRD-----KSVWIWETDESGEEYECISVL----------QEHS-QDVKHVIWHPSEALLASSSYDD------ 175 (330)
T ss_dssp TSCEEEEEETT-----SCEEEEECCTTCCCCEEEEEE----------CCCS-SCEEEEEECSSSSEEEEEETTS------
T ss_pred CCCEEEEEeCC-----CEEEEEeccCCCCCeEEEEEe----------ccCC-CceEEEEECCCCCEEEEEcCCC------
Confidence 45666777654 3578888843 344443321 0001 11122222 466777777643
Q ss_pred eEEEEECCCCcEEEeeecCCCCCCC-cceEEEEEC---CEEEEEcccCCCCcccCcEEEEEcCC------CcEEEeecCC
Q 010115 174 SVWTFDTETECWSVVEAKGDIPVAR-SGHTVVRAS---SVLILFGGEDGKRRKLNDLHMFDLKS------LTWLPLHCTG 243 (518)
Q Consensus 174 ~v~~yd~~t~~W~~~~~~~~~p~~r-~~~~~~~~~---~~iyv~GG~~~~~~~~~~~~~yd~~t------~~W~~~~~~g 243 (518)
.+..+|..+..|+.+.. +.... .-.++.... +..++.|+.+.. +.+||+.+ ..|....
T Consensus 176 ~i~iW~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~------v~iw~~~~~~~~~~~~~~~~~--- 243 (330)
T 2hes_X 176 TVRIWKDYDDDWECVAV---LNGHEGTVWSSDFDKTEGVFRLCSGSDDST------VRVWKYMGDDEDDQQEWVCEA--- 243 (330)
T ss_dssp CEEEEEEETTEEEEEEE---ECCCSSCEEEEEECCSSSSCEEEEEETTSC------EEEEEEEEECTTSCEEEEEEE---
T ss_pred eEEEEECCCCCeeEEEE---ccCCCCcEEEEEecCCCCeeEEEEEeCCCe------EEEEEecCCCccccceeEEee---
Confidence 46677777777766553 21111 111222222 345566665543 55555532 2455543
Q ss_pred CCC--CCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE----CCEEEEEcc
Q 010115 244 TGP--SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC----GTKWYIAGG 317 (518)
Q Consensus 244 ~~p--~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~----~~~iyv~GG 317 (518)
.++ ....-.+++...+. +++.||.++ .+..||..+..|+.+..... ........++.+ ++++++.||
T Consensus 244 ~~~~~h~~~v~~v~~s~~~-~l~s~~~dg-----~v~iw~~~~~~~~~~~~~~~-~h~~~~v~~v~~~~~~~~~~las~s 316 (330)
T 2hes_X 244 ILPDVHKRQVYNVAWGFNG-LIASVGADG-----VLAVYEEVDGEWKVFAKRAL-CHGVYEINVVKWLELNGKTILATGG 316 (330)
T ss_dssp ECCSCCSSCEEEEEECTTS-CEEEEETTS-----CEEEEEEETTEEEEEEEESC-TTTTSCEEEEEEC-----CCEEEEE
T ss_pred ecccccccceEEEEEcCCC-EEEEEeCCC-----EEEEEEcCCCceEEEecccc-ccccceEEEEEEecCCCceEEEEec
Confidence 222 12222333344555 667777654 48888988888876643210 111101122222 356777787
Q ss_pred cCCCCCcCeEEEEECCC
Q 010115 318 GSRKKRHAETLIFDILK 334 (518)
Q Consensus 318 ~~~~~~~~~v~~yd~~~ 334 (518)
.++. +.++|+++
T Consensus 317 ~Dg~-----v~~W~~~~ 328 (330)
T 2hes_X 317 DDGI-----VNFWSLEK 328 (330)
T ss_dssp TTSE-----EEEEEC--
T ss_pred CCCc-----EEEEEecc
Confidence 6543 67777643
No 165
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=93.58 E-value=8 Score=40.20 Aligned_cols=235 Identities=11% Similarity=0.092 Sum_probs=116.0
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCceeE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSV 175 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v 175 (518)
++.+|+.+..+ +.+.++|..+.+-...-.. .. .-|.++.. +..+|+.+.- +.|
T Consensus 148 ~~~~~vs~~~d-----~~V~v~D~~t~~~~~~i~~------------g~-~~~~v~~spdg~~l~v~~~d-------~~V 202 (543)
T 1nir_A 148 PNLFSVTLRDA-----GQIALVDGDSKKIVKVIDT------------GY-AVHISRMSASGRYLLVIGRD-------ARI 202 (543)
T ss_dssp GGEEEEEEGGG-----TEEEEEETTTCCEEEEEEC------------ST-TEEEEEECTTSCEEEEEETT-------SEE
T ss_pred CCEEEEEEcCC-----CeEEEEECCCceEEEEEec------------Cc-ccceEEECCCCCEEEEECCC-------CeE
Confidence 57788877543 4688899988754332221 01 13444333 4566666431 469
Q ss_pred EEEEC--CCCcEEEeeecCCCCCCCcceEEEEE-----CC-EEEEEcccCCCCcccCcEEEEEcCCCcEEEe-ecCCC--
Q 010115 176 WTFDT--ETECWSVVEAKGDIPVARSGHTVVRA-----SS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPL-HCTGT-- 244 (518)
Q Consensus 176 ~~yd~--~t~~W~~~~~~~~~p~~r~~~~~~~~-----~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~-~~~g~-- 244 (518)
..||+ .+.+-... ++....-..+++. ++ .+|+. .+. -+.+.++|..+.+-... ...+.
T Consensus 203 ~v~D~~~~t~~~~~~-----i~~g~~p~~va~sp~~~~dg~~l~v~-~~~-----~~~v~v~D~~t~~~~~~i~~~g~~~ 271 (543)
T 1nir_A 203 DMIDLWAKEPTKVAE-----IKIGIEARSVESSKFKGYEDRYTIAG-AYW-----PPQFAIMDGETLEPKQIVSTRGMTV 271 (543)
T ss_dssp EEEETTSSSCEEEEE-----EECCSEEEEEEECCSTTCTTTEEEEE-EEE-----SSEEEEEETTTCCEEEEEECCEECS
T ss_pred EEEECcCCCCcEEEE-----EecCCCcceEEeCCCcCCCCCEEEEE-Ecc-----CCeEEEEeccccccceeecccCccc
Confidence 99999 66553222 2222222334443 44 55554 322 24578889887654332 21110
Q ss_pred -----CCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCE-EEEEcc
Q 010115 245 -----GPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK-WYIAGG 317 (518)
Q Consensus 245 -----~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~-iyv~GG 317 (518)
.|.+|....+...++..+|+.... .+.++.+|..+..-..+... +..+.-+..+.. +++ +|+.+.
T Consensus 272 ~~~~~~~~~~v~~i~~s~~~~~~~vs~~~-----~g~i~vvd~~~~~~l~~~~i---~~~~~~~~~~~spdg~~l~va~~ 343 (543)
T 1nir_A 272 DTQTYHPEPRVAAIIASHEHPEFIVNVKE-----TGKVLLVNYKDIDNLTVTSI---GAAPFLHDGGWDSSHRYFMTAAN 343 (543)
T ss_dssp SSCCEESCCCEEEEEECSSSSEEEEEETT-----TTEEEEEECTTSSSCEEEEE---ECCSSCCCEEECTTSCEEEEEEG
T ss_pred CccccccCCceEEEEECCCCCEEEEEECC-----CCeEEEEEecCCCcceeEEe---ccCcCccCceECCCCCEEEEEec
Confidence 122233322223335545555432 24699999876432111111 112222333333 444 555443
Q ss_pred cCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEccc
Q 010115 318 GSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (518)
Q Consensus 318 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~ 388 (518)
.+ +.+.++|+.+++-...... ...|.+.. .+... +.+.+.+|+.+..+. +.|-++|..+
T Consensus 344 ~~-----~~v~v~D~~tg~l~~~i~~-g~~ph~g~--g~~~~-~p~~g~~~~s~~~~d---~~V~v~d~~~ 402 (543)
T 1nir_A 344 NS-----NKVAVIDSKDRRLSALVDV-GKTPHPGR--GANFV-HPKYGPVWSTSHLGD---GSISLIGTDP 402 (543)
T ss_dssp GG-----TEEEEEETTTTEEEEEEEC-SSSBCCTT--CEEEE-ETTTEEEEEEEBSSS---SEEEEEECCT
T ss_pred CC-----CeEEEEECCCCeEEEeecc-CCCCCCCC--CcccC-CCCCccEEEeccCCC---ceEEEEEeCC
Confidence 22 4588899999876553321 11222222 22222 334466787765432 2688888876
No 166
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=93.55 E-value=5.4 Score=38.17 Aligned_cols=105 Identities=13% Similarity=0.161 Sum_probs=59.1
Q ss_pred CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCe
Q 010115 207 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI 286 (518)
Q Consensus 207 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 286 (518)
++.+++.|+.++ .+.+||+.+.+-..+. .........+++...+..+++.|+.++ .|..||+.+.+
T Consensus 138 ~~~~l~s~s~dg------~i~~wd~~~~~~~~~~---~~~~~~~i~~~~~~pdg~~lasg~~dg-----~i~iwd~~~~~ 203 (343)
T 3lrv_A 138 NTEYFIWADNRG------TIGFQSYEDDSQYIVH---SAKSDVEYSSGVLHKDSLLLALYSPDG-----ILDVYNLSSPD 203 (343)
T ss_dssp -CCEEEEEETTC------CEEEEESSSSCEEEEE---CCCSSCCCCEEEECTTSCEEEEECTTS-----CEEEEESSCTT
T ss_pred CCCEEEEEeCCC------cEEEEECCCCcEEEEE---ecCCCCceEEEEECCCCCEEEEEcCCC-----EEEEEECCCCC
Confidence 456777777654 3889999887765443 122222233455555554777777654 59999998765
Q ss_pred EE--EeecCCCCCCCCcceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCCCc
Q 010115 287 WT--RIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGE 336 (518)
Q Consensus 287 W~--~v~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 336 (518)
-. .+.. .... .-..+.+ ++..++.|+ .+ .+.++|+.+..
T Consensus 204 ~~~~~~~~----~h~~-~v~~l~fs~~g~~l~s~~-~~-----~v~iwd~~~~~ 246 (343)
T 3lrv_A 204 QASSRFPV----DEEA-KIKEVKFADNGYWMVVEC-DQ-----TVVCFDLRKDV 246 (343)
T ss_dssp SCCEECCC----CTTS-CEEEEEECTTSSEEEEEE-SS-----BEEEEETTSST
T ss_pred CCccEEec----cCCC-CEEEEEEeCCCCEEEEEe-CC-----eEEEEEcCCCC
Confidence 32 2211 0111 1122233 556666666 22 48899987754
No 167
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=93.54 E-value=5.8 Score=41.94 Aligned_cols=199 Identities=10% Similarity=-0.012 Sum_probs=94.9
Q ss_pred eeEEEEECC--C-CcEEEeeecCCCC----CCCcceEEEEECCEEEEEcccCC----CCcccCcEEEEEcCC------Cc
Q 010115 173 VSVWTFDTE--T-ECWSVVEAKGDIP----VARSGHTVVRASSVLILFGGEDG----KRRKLNDLHMFDLKS------LT 235 (518)
Q Consensus 173 ~~v~~yd~~--t-~~W~~~~~~~~~p----~~r~~~~~~~~~~~iyv~GG~~~----~~~~~~~~~~yd~~t------~~ 235 (518)
..+|.++.. + ..-..+.. .+ ..+....+..-+++.+++...+. ......+++++|+.+ .+
T Consensus 102 ~~l~~~~~~~~g~~~~~~l~~---~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 178 (662)
T 3azo_A 102 QRLYAFEPDAPGGAVPRPLTP---VSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA 178 (662)
T ss_dssp CCEEEECTTSTTCCCCEECSC---CCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG
T ss_pred CeEEEEcCCCCCCCCCEeccC---CccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc
Confidence 469999987 4 55555543 22 11222222223454444444331 012236799999988 66
Q ss_pred EEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCC---CCCcEEEEEcC-CC---eEEEeecCCCCCCCCcceEEEEE
Q 010115 236 WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK---TLNDLYSLDFE-TM---IWTRIKIRGFHPSPRAGCCGVLC 308 (518)
Q Consensus 236 W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~---~~~~v~~yd~~-~~---~W~~v~~~~~~p~~r~~~~~~~~ 308 (518)
.+.+.. .........+..-+++. +++...+... ...+|+.+|++ +. ....+... .. ......+..
T Consensus 179 ~~~l~~---~~~~~~~~~~~SpDG~~-la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~---~~-~~~~~~~~s 250 (662)
T 3azo_A 179 VRELSD---DAHRFVTGPRLSPDGRQ-AVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG---PE-EAIAQAEWA 250 (662)
T ss_dssp SEESSC---SCSSEECCCEECTTSSE-EEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE---TT-BCEEEEEEC
T ss_pred eeEEEe---cCCCcccCceECCCCCE-EEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC---CC-ceEcceEEC
Confidence 655530 10111111122234553 4443322211 12579999998 56 45554331 11 111222222
Q ss_pred -CCEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCC--CCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEE
Q 010115 309 -GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSS--VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLS 385 (518)
Q Consensus 309 -~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~--~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd 385 (518)
++++|+.+..++ ...+|.+|+.+.+++.+....... +....+...+.+.. ++.+++.+.. ....+|.+|
T Consensus 251 pdg~l~~~~~~~~---~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~--~~~~~~~~~~---~~~~l~~~d 322 (662)
T 3azo_A 251 PDGSLIVATDRTG---WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLA--NGLIAVVHGK---GAAVLGILD 322 (662)
T ss_dssp TTSCEEEEECTTS---SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECT--TSCEEEEEBS---SSCEEEEEE
T ss_pred CCCeEEEEECCCC---CeEEEEEECCCCceeecccccccccCccccccCceEeEeC--CCEEEEEEEc---CccEEEEEE
Confidence 677777665432 247999999899998875322111 11111111122221 2345555543 334777778
Q ss_pred cccCC
Q 010115 386 IEKNE 390 (518)
Q Consensus 386 ~~~~~ 390 (518)
+.+.+
T Consensus 323 ~~~~~ 327 (662)
T 3azo_A 323 PESGE 327 (662)
T ss_dssp TTTTE
T ss_pred CCCCc
Confidence 76554
No 168
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=93.54 E-value=4.3 Score=39.36 Aligned_cols=188 Identities=10% Similarity=0.030 Sum_probs=98.5
Q ss_pred EEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCceeEEE
Q 010115 100 KMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWT 177 (518)
Q Consensus 100 ~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~ 177 (518)
.+++.|+.+ ..+.+||..+......... ......-.+++.. ++.+++.|+.+. .+..
T Consensus 87 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~----------~~h~~~v~~~~~~~~~~~~l~s~~~d~------~i~i 145 (383)
T 3ei3_B 87 TTVAVGSKG-----GDIILWDYDVQNKTSFIQG----------MGPGDAITGMKFNQFNTNQLFVSSIRG------ATTL 145 (383)
T ss_dssp TEEEEEEBT-----SCEEEEETTSTTCEEEECC----------CSTTCBEEEEEEETTEEEEEEEEETTT------EEEE
T ss_pred CEEEEEcCC-----CeEEEEeCCCcccceeeec----------CCcCCceeEEEeCCCCCCEEEEEeCCC------EEEE
Confidence 577777754 4689999988766554321 0011111233333 346777776543 5888
Q ss_pred EECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEE
Q 010115 178 FDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAAL 256 (518)
Q Consensus 178 yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~ 256 (518)
||..+.....+.... .....-.+++. -++.+++.|+.+ ..+.+||+....-..+.. . ...-.+++.
T Consensus 146 wd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~----h-~~~v~~~~~ 212 (383)
T 3ei3_B 146 RDFSGSVIQVFAKTD--SWDYWYCCVDVSVSRQMLATGDST------GRLLLLGLDGHEIFKEKL----H-KAKVTHAEF 212 (383)
T ss_dssp EETTSCEEEEEECCC--CSSCCEEEEEEETTTTEEEEEETT------SEEEEEETTSCEEEEEEC----S-SSCEEEEEE
T ss_pred EECCCCceEEEeccC--CCCCCeEEEEECCCCCEEEEECCC------CCEEEEECCCCEEEEecc----C-CCcEEEEEE
Confidence 999987766665311 11111122222 245666777654 358889986554444431 1 111223333
Q ss_pred ECCcE-EEEEcCCCCCCCCCcEEEEEcCC----CeEEEeecCCCCCCCCcceEEEEE--CCEEEEEcccCCCCCcCeEEE
Q 010115 257 YDDKN-LLIFGGSSKSKTLNDLYSLDFET----MIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLI 329 (518)
Q Consensus 257 ~~~~~-lyv~GG~~~~~~~~~v~~yd~~~----~~W~~v~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~ 329 (518)
..+.. +++.|+.++ .+..||+.+ ......... ...-.++... ++++++.|+.+ ..+.+
T Consensus 213 ~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~~l~~~~~d-----~~i~i 277 (383)
T 3ei3_B 213 NPRCDWLMATSSVDA-----TVKLWDLRNIKDKNSYIAEMPH-----EKPVNAAYFNPTDSTKLLTTDQR-----NEIRV 277 (383)
T ss_dssp CSSCTTEEEEEETTS-----EEEEEEGGGCCSTTCEEEEEEC-----SSCEEEEEECTTTSCEEEEEESS-----SEEEE
T ss_pred CCCCCCEEEEEeCCC-----EEEEEeCCCCCcccceEEEecC-----CCceEEEEEcCCCCCEEEEEcCC-----CcEEE
Confidence 33332 566666543 588999876 333222211 1111222222 45677777654 34888
Q ss_pred EECCCCc
Q 010115 330 FDILKGE 336 (518)
Q Consensus 330 yd~~~~~ 336 (518)
||+.+..
T Consensus 278 wd~~~~~ 284 (383)
T 3ei3_B 278 YSSYDWS 284 (383)
T ss_dssp EETTBTT
T ss_pred EECCCCc
Confidence 9987644
No 169
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=93.53 E-value=4.1 Score=38.15 Aligned_cols=187 Identities=12% Similarity=0.086 Sum_probs=92.1
Q ss_pred CEEEEEcCcCCCCCCceeEEEEECCCCc--EEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCC
Q 010115 157 KKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (518)
Q Consensus 157 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~ 234 (518)
+++++.|... ..+..+|.++++ |+.-... . ....+..+.-++.+++.+ -+.+..||++..
T Consensus 5 ~~~lv~~~~~------~~v~~~d~~tG~~~w~~~~~~---~-~~~~~~~~~pdG~ilvs~--------~~~V~~~d~~G~ 66 (276)
T 3no2_A 5 QHLLVGGSGW------NKIAIINKDTKEIVWEYPLEK---G-WECNSVAATKAGEILFSY--------SKGAKMITRDGR 66 (276)
T ss_dssp CEEEEECTTC------SEEEEEETTTTEEEEEEECCT---T-CCCCEEEECTTSCEEEEC--------BSEEEEECTTSC
T ss_pred CcEEEeeCCC------CEEEEEECCCCeEEEEeCCCc---c-CCCcCeEECCCCCEEEeC--------CCCEEEECCCCC
Confidence 5677776543 368899998876 7654320 0 122233333467888732 135888998322
Q ss_pred -cEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCe-EEEeecCCC-CCCCCcceEEEEECCE
Q 010115 235 -TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI-WTRIKIRGF-HPSPRAGCCGVLCGTK 311 (518)
Q Consensus 235 -~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~-W~~v~~~~~-~p~~r~~~~~~~~~~~ 311 (518)
.|+.-. +.....+++....+..+++..... ...++.+|++.+. |+.-...+. .+...........++.
T Consensus 67 ~~W~~~~-----~~~~~~~~~~~~~dG~~lv~~~~~----~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~ 137 (276)
T 3no2_A 67 ELWNIAA-----PAGCEMQTARILPDGNALVAWCGH----PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGN 137 (276)
T ss_dssp EEEEEEC-----CTTCEEEEEEECTTSCEEEEEEST----TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSC
T ss_pred EEEEEcC-----CCCccccccEECCCCCEEEEecCC----CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCC
Confidence 365432 111122344444444355543221 2368888886543 443211110 0111111222333666
Q ss_pred EEEEcccCCCCCcCeEEEEECCCC-ceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 312 WYIAGGGSRKKRHAETLIFDILKG-EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 312 iyv~GG~~~~~~~~~v~~yd~~~~-~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
+++..... ..+.+||++.+ .|+.-. + ..-+++..+. .+.+++.+..+ ..+..+|+++.+
T Consensus 138 ~lv~~~~~-----~~v~~~d~~G~~~w~~~~--~------~~~~~~~~~~---~g~~~v~~~~~----~~v~~~d~~tG~ 197 (276)
T 3no2_A 138 YLVPLFAT-----SEVREIAPNGQLLNSVKL--S------GTPFSSAFLD---NGDCLVACGDA----HCFVQLNLESNR 197 (276)
T ss_dssp EEEEETTT-----TEEEEECTTSCEEEEEEC--S------SCCCEEEECT---TSCEEEECBTT----SEEEEECTTTCC
T ss_pred EEEEecCC-----CEEEEECCCCCEEEEEEC--C------CCccceeEcC---CCCEEEEeCCC----CeEEEEeCcCCc
Confidence 66654322 45899998743 355422 1 1123333332 24466665543 258888887554
No 170
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=93.50 E-value=3.7 Score=40.70 Aligned_cols=110 Identities=14% Similarity=0.164 Sum_probs=57.5
Q ss_pred CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCC-CCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC
Q 010115 207 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGP-SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM 285 (518)
Q Consensus 207 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p-~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~ 285 (518)
++.+++.|+.++ .+.+||+.+.+-...- ..+ ....-.+++...+..+++.|+.++ .+..||+.+.
T Consensus 181 ~~~~l~~~~~d~------~i~iwd~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~~l~s~~~dg-----~i~iwd~~~~ 246 (437)
T 3gre_A 181 EKSLLVALTNLS------RVIIFDIRTLERLQII---ENSPRHGAVSSICIDEECCVLILGTTRG-----IIDIWDIRFN 246 (437)
T ss_dssp SCEEEEEEETTS------EEEEEETTTCCEEEEE---ECCGGGCCEEEEEECTTSCEEEEEETTS-----CEEEEETTTT
T ss_pred CCCEEEEEeCCC------eEEEEeCCCCeeeEEE---ccCCCCCceEEEEECCCCCEEEEEcCCC-----eEEEEEcCCc
Confidence 367777777653 4889999876643322 111 112222333333443677776654 4999999876
Q ss_pred eEEEeecCCCCCCCCcceEEEEE-----CCEEEEEcccCCCCCcCeEEEEECCCCceE
Q 010115 286 IWTRIKIRGFHPSPRAGCCGVLC-----GTKWYIAGGGSRKKRHAETLIFDILKGEWS 338 (518)
Q Consensus 286 ~W~~v~~~~~~p~~r~~~~~~~~-----~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 338 (518)
+....-.. +....-.+++.. ++++++.|+.++ .+.+||+.+.+-.
T Consensus 247 ~~~~~~~~---~~~~~v~~~~~~~~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~~ 296 (437)
T 3gre_A 247 VLIRSWSF---GDHAPITHVEVCQFYGKNSVIVVGGSSKT-----FLTIWNFVKGHCQ 296 (437)
T ss_dssp EEEEEEBC---TTCEEEEEEEECTTTCTTEEEEEEESTTE-----EEEEEETTTTEEE
T ss_pred cEEEEEec---CCCCceEEEEeccccCCCccEEEEEcCCC-----cEEEEEcCCCcEE
Confidence 54332221 111111111111 244566665443 4889998876543
No 171
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=93.43 E-value=7 Score=41.92 Aligned_cols=195 Identities=9% Similarity=-0.025 Sum_probs=100.7
Q ss_pred CcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCC------CCCceeEEEEECCCCcE--
Q 010115 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDS------GSDRVSVWTFDTETECW-- 185 (518)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~------~~~~~~v~~yd~~t~~W-- 185 (518)
..++++|+.+.+....... ..+.....-..++.||+..-.... ......||++++.+..=
T Consensus 155 ~~i~v~dl~tg~~~~~~~~------------~~k~~~~~WsDg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~ 222 (693)
T 3iuj_A 155 REIHLMDVESKQPLETPLK------------DVKFSGISWLGNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDD 222 (693)
T ss_dssp EEEEEEETTTCSEEEEEEE------------EEESCCCEEETTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGC
T ss_pred EEEEEEECCCCCCCccccC------------CceeccEEEeCCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccc
Confidence 5789999999887554321 011122223334455554322110 02234689998877652
Q ss_pred EEeeecCCCCC--CCcceEEEE-ECC-EEEEEcccCCCCcccCcEEEEEcCCC--cEEEeecCCCCCCCCCCcEEEEECC
Q 010115 186 SVVEAKGDIPV--ARSGHTVVR-ASS-VLILFGGEDGKRRKLNDLHMFDLKSL--TWLPLHCTGTGPSPRSNHVAALYDD 259 (518)
Q Consensus 186 ~~~~~~~~~p~--~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~g~~p~~r~~~~~~~~~~ 259 (518)
..+.. .+. +........ -++ .|++....... .++++++|+.+. .|..+.. +.. .........+
T Consensus 223 ~~v~~---~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~---~~~i~~~d~~~~~~~~~~l~~----~~~-~~~~~~~~~g 291 (693)
T 3iuj_A 223 RLVFG---AIPAQHHRYVGATVTEDDRFLLISAANSTS---GNRLYVKDLSQENAPLLTVQG----DLD-ADVSLVDNKG 291 (693)
T ss_dssp EEEES---CSGGGCCSEEEEEECTTSCEEEEEEESSSS---CCEEEEEETTSTTCCCEEEEC----SSS-SCEEEEEEET
T ss_pred eEEEe---cCCCCCeEEEEEEEcCCCCEEEEEEccCCC---CcEEEEEECCCCCCceEEEeC----CCC-ceEEEEeccC
Confidence 22221 121 222222222 234 44443332221 368999998765 6887752 111 1222233445
Q ss_pred cEEEEEcCCCCCCCCCcEEEEEcCC---CeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCc
Q 010115 260 KNLLIFGGSSKSKTLNDLYSLDFET---MIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE 336 (518)
Q Consensus 260 ~~lyv~GG~~~~~~~~~v~~yd~~~---~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 336 (518)
+.||+....+. ....|+.+|+.+ ..|+.+.+.. .. . . .....++.|++..-... ...++++|+++..
T Consensus 292 ~~l~~~t~~~~--~~~~l~~~d~~~~~~~~~~~l~~~~--~~-~-~-~~s~~g~~lv~~~~~~g---~~~l~~~d~~g~~ 361 (693)
T 3iuj_A 292 STLYLLTNRDA--PNRRLVTVDAANPGPAHWRDLIPER--QQ-V-L-TVHSGSGYLFAEYMVDA---TARVEQFDYEGKR 361 (693)
T ss_dssp TEEEEEECTTC--TTCEEEEEETTSCCGGGCEEEECCC--SS-C-E-EEEEETTEEEEEEEETT---EEEEEEECTTSCE
T ss_pred CEEEEEECCCC--CCCEEEEEeCCCCCccccEEEecCC--CC-E-E-EEEEECCEEEEEEEECC---eeEEEEEECCCCe
Confidence 55888765432 245799999876 3488876531 11 1 1 34445677766543222 2468899988776
Q ss_pred eEEee
Q 010115 337 WSVAI 341 (518)
Q Consensus 337 W~~~~ 341 (518)
...+.
T Consensus 362 ~~~l~ 366 (693)
T 3iuj_A 362 VREVA 366 (693)
T ss_dssp EEEEC
T ss_pred eEEee
Confidence 66554
No 172
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.38 E-value=1.1 Score=43.68 Aligned_cols=200 Identities=8% Similarity=-0.015 Sum_probs=96.6
Q ss_pred CcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CC-EEEEEcCcCCCCCCceeEEEEECCCCcEEEeeec
Q 010115 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GK-KVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 191 (518)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 191 (518)
..++++|+.+.....+... .....+....- ++ .|++... .........+|.+|+.+.++..+..
T Consensus 168 ~~l~~~d~~~g~~~~~~~~------------~~~~~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~~~~l~~- 233 (396)
T 3c5m_A 168 CRLIKVDIETGELEVIHQD------------TAWLGHPIYRPFDDSTVGFCHE-GPHDLVDARMWLVNEDGSNVRKIKE- 233 (396)
T ss_dssp EEEEEEETTTCCEEEEEEE------------SSCEEEEEEETTEEEEEEEEEC-SCSSSCSCCCEEEETTSCCCEESSC-
T ss_pred ceEEEEECCCCcEEeeccC------------CcccccceECCCCCCEEEEEec-CCCCCCCceEEEEECCCCceeEeec-
Confidence 4688899988777665531 11112222222 23 3544432 1111112469999998888776643
Q ss_pred CCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEE--CCcEEEEEcCC
Q 010115 192 GDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY--DDKNLLIFGGS 268 (518)
Q Consensus 192 ~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~~lyv~GG~ 268 (518)
..+ .......+. -+++.+++...... .....++++|+.+.+...+. ..+. +..+.. +++ ++++.+.
T Consensus 234 -~~~-~~~~~~~~~spdg~~l~~~~~~~~-~~~~~l~~~d~~~g~~~~l~---~~~~----~~~~~s~~dg~-~l~~~~~ 302 (396)
T 3c5m_A 234 -HAE-GESCTHEFWIPDGSAMAYVSYFKG-QTDRVIYKANPETLENEEVM---VMPP----CSHLMSNFDGS-LMVGDGC 302 (396)
T ss_dssp -CCT-TEEEEEEEECTTSSCEEEEEEETT-TCCEEEEEECTTTCCEEEEE---ECCS----EEEEEECSSSS-EEEEEEC
T ss_pred -cCC-CccccceEECCCCCEEEEEecCCC-CccceEEEEECCCCCeEEee---eCCC----CCCCccCCCCc-eEEEecC
Confidence 111 111111222 23443333333221 11234999999988877765 2221 113333 566 5555432
Q ss_pred CC-----------CCCCCcEEEEEcCCCeEEEeecCCCCC-----C-C-CcceEEEEECC-EEEEEcccCCCCCcCeEEE
Q 010115 269 SK-----------SKTLNDLYSLDFETMIWTRIKIRGFHP-----S-P-RAGCCGVLCGT-KWYIAGGGSRKKRHAETLI 329 (518)
Q Consensus 269 ~~-----------~~~~~~v~~yd~~~~~W~~v~~~~~~p-----~-~-r~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~ 329 (518)
.. ......++.+|+.+.+.+.+....... . . .....+..-++ .|++.....+ ...+|.
T Consensus 303 ~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~---~~~l~~ 379 (396)
T 3c5m_A 303 DAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEG---VPAIYI 379 (396)
T ss_dssp CC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTS---SCEEEE
T ss_pred CcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCC---CceEEE
Confidence 10 112357999999888777665431100 0 0 01111111244 4554443222 356999
Q ss_pred EECCCCceEEee
Q 010115 330 FDILKGEWSVAI 341 (518)
Q Consensus 330 yd~~~~~W~~~~ 341 (518)
+|+.+..++.+.
T Consensus 380 ~~~~~~~~~~~~ 391 (396)
T 3c5m_A 380 ADVPESYKHLEH 391 (396)
T ss_dssp EECCTTCC----
T ss_pred EEEccccccccc
Confidence 999888887654
No 173
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=93.24 E-value=7.4 Score=41.56 Aligned_cols=191 Identities=11% Similarity=0.074 Sum_probs=92.5
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEE-ECCEEEEEcCcCCCCCCceeEE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSGSDRVSVW 176 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~ 176 (518)
++.+++.|+.+ ..+.++|..+..-...-. .....-.+++. .++..++.|+.+. .+.
T Consensus 441 ~g~~l~sgs~D-----g~v~vwd~~~~~~~~~~~------------~h~~~v~~~~~s~~~~~l~s~s~D~------~i~ 497 (694)
T 3dm0_A 441 DGQFALSGSWD-----GELRLWDLAAGVSTRRFV------------GHTKDVLSVAFSLDNRQIVSASRDR------TIK 497 (694)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTTEEEEEEE------------CCSSCEEEEEECTTSSCEEEEETTS------CEE
T ss_pred CCCEEEEEeCC-----CcEEEEECCCCcceeEEe------------CCCCCEEEEEEeCCCCEEEEEeCCC------EEE
Confidence 46677777755 468889988764332211 00001112222 2456666776543 477
Q ss_pred EEECCCCcEEEeeecCCCCCCCcceEEEEE-C---CEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCc
Q 010115 177 TFDTETECWSVVEAKGDIPVARSGHTVVRA-S---SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 252 (518)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~---~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~ 252 (518)
.+|.....-..+... ....+..-.++.+ . ..+++.|+.+. .+.+||+.+.+-...- ... ...-.
T Consensus 498 iwd~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~d~------~v~vwd~~~~~~~~~~---~~h-~~~v~ 565 (694)
T 3dm0_A 498 LWNTLGECKYTISEG--GEGHRDWVSCVRFSPNTLQPTIVSASWDK------TVKVWNLSNCKLRSTL---AGH-TGYVS 565 (694)
T ss_dssp EECTTSCEEEEECSS--TTSCSSCEEEEEECSCSSSCEEEEEETTS------CEEEEETTTCCEEEEE---CCC-SSCEE
T ss_pred EEECCCCcceeeccC--CCCCCCcEEEEEEeCCCCcceEEEEeCCC------eEEEEECCCCcEEEEE---cCC-CCCEE
Confidence 777765432222210 1111111122222 2 24566666553 4888998876654332 111 11122
Q ss_pred EEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCCCcCeEEEEEC
Q 010115 253 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDI 332 (518)
Q Consensus 253 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~ 332 (518)
+++...+..+++.|+.++ .|..||+.+.+- +... .......+++...+..+++++.. ..+.+||+
T Consensus 566 ~v~~spdg~~l~sg~~Dg-----~i~iwd~~~~~~--~~~~---~~~~~v~~~~~sp~~~~l~~~~~-----~~i~iwd~ 630 (694)
T 3dm0_A 566 TVAVSPDGSLCASGGKDG-----VVLLWDLAEGKK--LYSL---EANSVIHALCFSPNRYWLCAATE-----HGIKIWDL 630 (694)
T ss_dssp EEEECTTSSEEEEEETTS-----BCEEEETTTTEE--EECC---BCSSCEEEEEECSSSSEEEEEET-----TEEEEEET
T ss_pred EEEEeCCCCEEEEEeCCC-----eEEEEECCCCce--EEEe---cCCCcEEEEEEcCCCcEEEEEcC-----CCEEEEEC
Confidence 333444433777777654 488899877652 2222 11112233333334444444433 23888998
Q ss_pred CCCceE
Q 010115 333 LKGEWS 338 (518)
Q Consensus 333 ~~~~W~ 338 (518)
.+..-.
T Consensus 631 ~~~~~~ 636 (694)
T 3dm0_A 631 ESKSIV 636 (694)
T ss_dssp TTTEEE
T ss_pred CCCCCh
Confidence 876543
No 174
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=93.24 E-value=6.8 Score=38.41 Aligned_cols=148 Identities=14% Similarity=0.114 Sum_probs=74.2
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCceeEE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~ 176 (518)
+++.++.|+.+ ..+.+||..+.+-...-. .....-.+++.. ++..++.|+.+. .+.
T Consensus 134 dg~~l~s~~~d-----~~i~iwd~~~~~~~~~~~------------~h~~~v~~~~~~p~~~~l~s~s~d~------~v~ 190 (393)
T 1erj_A 134 DGKFLATGAED-----RLIRIWDIENRKIVMILQ------------GHEQDIYSLDYFPSGDKLVSGSGDR------TVR 190 (393)
T ss_dssp TSSEEEEEETT-----SCEEEEETTTTEEEEEEC------------CCSSCEEEEEECTTSSEEEEEETTS------EEE
T ss_pred CCCEEEEEcCC-----CeEEEEECCCCcEEEEEc------------cCCCCEEEEEEcCCCCEEEEecCCC------cEE
Confidence 46677777754 468899988765433211 001111222222 455566666543 688
Q ss_pred EEECCCCcEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCC-C--CCCCCC
Q 010115 177 TFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGT-G--PSPRSN 251 (518)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~-~--p~~r~~ 251 (518)
.||+.+.+...... ... .-.+++.. ++.+++.|+.+. .+.+||+.+..-...-.... . .....-
T Consensus 191 iwd~~~~~~~~~~~---~~~--~v~~~~~~~~~~~~l~~~s~d~------~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v 259 (393)
T 1erj_A 191 IWDLRTGQCSLTLS---IED--GVTTVAVSPGDGKYIAAGSLDR------AVRVWDSETGFLVERLDSENESGTGHKDSV 259 (393)
T ss_dssp EEETTTTEEEEEEE---CSS--CEEEEEECSTTCCEEEEEETTS------CEEEEETTTCCEEEEEC------CCCSSCE
T ss_pred EEECCCCeeEEEEE---cCC--CcEEEEEECCCCCEEEEEcCCC------cEEEEECCCCcEEEeecccccCCCCCCCCE
Confidence 88998887544332 111 11222332 567778877654 37888988765433210000 0 001111
Q ss_pred cEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCC
Q 010115 252 HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET 284 (518)
Q Consensus 252 ~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~ 284 (518)
.+++...+..+++.|+.++ .+..||+.+
T Consensus 260 ~~v~~~~~g~~l~s~s~d~-----~v~~wd~~~ 287 (393)
T 1erj_A 260 YSVVFTRDGQSVVSGSLDR-----SVKLWNLQN 287 (393)
T ss_dssp EEEEECTTSSEEEEEETTS-----EEEEEEC--
T ss_pred EEEEECCCCCEEEEEeCCC-----EEEEEECCC
Confidence 2233333333667776554 477888754
No 175
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=93.21 E-value=5.6 Score=37.40 Aligned_cols=188 Identities=9% Similarity=0.086 Sum_probs=91.3
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCc
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 235 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 235 (518)
++++++.|+.+. .+..++........... ..............+..++.|+.+. .+..+|.....
T Consensus 97 dg~~l~s~~~d~------~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~s~s~d~------~~~~~d~~~~~ 161 (340)
T 4aow_A 97 DGQFALSGSWDG------TLRLWDLTTGTTTRRFV---GHTKDVLSVAFSSDNRQIVSGSRDK------TIKLWNTLGVC 161 (340)
T ss_dssp TSSEEEEEETTS------EEEEEETTTTEEEEEEE---CCSSCEEEEEECTTSSCEEEEETTS------CEEEECTTSCE
T ss_pred CCCEEEEEcccc------cceEEeecccceeeeec---CCCCceeEEEEeecCccceeecCCC------eEEEEEeCCCc
Confidence 466777777643 57778888777555443 2222222222223455666666554 35667765543
Q ss_pred EEEeecCCCCCCCCCCcEEEEE---CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCE
Q 010115 236 WLPLHCTGTGPSPRSNHVAALY---DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK 311 (518)
Q Consensus 236 W~~~~~~g~~p~~r~~~~~~~~---~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~ 311 (518)
-..... .........+.+ ....+++.|+.+. .+..||..+.+-...... ....-.+++.. +++
T Consensus 162 ~~~~~~----~~~~~~v~~~~~~~~~~~~~~~s~~~d~-----~i~i~d~~~~~~~~~~~~----h~~~v~~~~~s~~~~ 228 (340)
T 4aow_A 162 KYTVQD----ESHSEWVSCVRFSPNSSNPIIVSCGWDK-----LVKVWNLANCKLKTNHIG----HTGYLNTVTVSPDGS 228 (340)
T ss_dssp EEEECS----SSCSSCEEEEEECSCSSSCEEEEEETTS-----CEEEEETTTTEEEEEECC----CSSCEEEEEECTTSS
T ss_pred eEEEEe----ccccCcccceEEccCCCCcEEEEEcCCC-----EEEEEECCCCceeeEecC----CCCcEEEEEECCCCC
Confidence 333221 111111112221 2223556665543 488899887764433221 11111222222 567
Q ss_pred EEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 312 WYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 312 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
+++.|+.++ .+.+||+.+..-...... ......+.+.. + .. ++.|+.+ ..+.+||+++..
T Consensus 229 ~l~s~s~Dg-----~i~iwd~~~~~~~~~~~~-------~~~v~~~~~~~-~-~~-~~~~~~d----~~i~iwd~~~~~ 288 (340)
T 4aow_A 229 LCASGGKDG-----QAMLWDLNEGKHLYTLDG-------GDIINALCFSP-N-RY-WLCAATG----PSIKIWDLEGKI 288 (340)
T ss_dssp EEEEEETTC-----EEEEEETTTTEEEEEEEC-------SSCEEEEEECS-S-SS-EEEEEET----TEEEEEETTTTE
T ss_pred EEEEEeCCC-----eEEEEEeccCceeeeecC-------CceEEeeecCC-C-Cc-eeeccCC----CEEEEEECCCCe
Confidence 788887654 488899887654332211 11123333332 2 22 3445543 257788876543
No 176
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=93.09 E-value=2.5 Score=39.81 Aligned_cols=213 Identities=13% Similarity=-0.016 Sum_probs=105.3
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCC
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~ 234 (518)
++.||+..-.. ..+++||+.+++...... +. +. .+++. -++.+|+.. .+.+++||+++.
T Consensus 24 ~~~l~~~d~~~------~~i~~~d~~~~~~~~~~~----~~-~~-~~i~~~~dG~l~v~~--------~~~l~~~d~~~g 83 (297)
T 3g4e_A 24 SNSLLFVDIPA------KKVCRWDSFTKQVQRVTM----DA-PV-SSVALRQSGGYVATI--------GTKFCALNWKEQ 83 (297)
T ss_dssp TTEEEEEETTT------TEEEEEETTTCCEEEEEC----SS-CE-EEEEEBTTSSEEEEE--------TTEEEEEETTTT
T ss_pred CCEEEEEECCC------CEEEEEECCCCcEEEEeC----CC-ce-EEEEECCCCCEEEEE--------CCeEEEEECCCC
Confidence 47888876543 369999999887655432 21 12 22333 345666642 146899999999
Q ss_pred cEEEeecCCC-CCCCCCCcEEEEECCcEEEEEcCCCC------CCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEE
Q 010115 235 TWLPLHCTGT-GPSPRSNHVAALYDDKNLLIFGGSSK------SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL 307 (518)
Q Consensus 235 ~W~~~~~~g~-~p~~r~~~~~~~~~~~~lyv~GG~~~------~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~ 307 (518)
+++.+..... .+..+.. ..++..+..+|+..-... ......++++|+.. +...+.... .. ..+.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~-di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~--~~---pngi~~ 156 (297)
T 3g4e_A 84 SAVVLATVDNDKKNNRFN-DGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQV--DI---SNGLDW 156 (297)
T ss_dssp EEEEEEECCTTCSSEEEE-EEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEE--SB---EEEEEE
T ss_pred cEEEEEecCCCCCCCCCC-CEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeecc--cc---ccceEE
Confidence 9887753211 1222222 233333333666321111 11234689998763 333332210 11 123333
Q ss_pred E--CCEEEEEcccCCCCCcCeEEEEEC--CCCceEE---eecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCc
Q 010115 308 C--GTKWYIAGGGSRKKRHAETLIFDI--LKGEWSV---AITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQ 380 (518)
Q Consensus 308 ~--~~~iyv~GG~~~~~~~~~v~~yd~--~~~~W~~---~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~ 380 (518)
. +..+|+..... ..+++||. .+..... +...+.. .. ....+.+. .++.||+....+ +.
T Consensus 157 spdg~~lyv~~~~~-----~~i~~~~~d~~~G~~~~~~~~~~~~~~---~~-~p~g~~~d--~~G~lwva~~~~----~~ 221 (297)
T 3g4e_A 157 SLDHKIFYYIDSLS-----YSVDAFDYDLQTGQISNRRSVYKLEKE---EQ-IPDGMCID--AEGKLWVACYNG----GR 221 (297)
T ss_dssp CTTSCEEEEEEGGG-----TEEEEEEECTTTCCEEEEEEEEECCGG---GC-EEEEEEEB--TTSCEEEEEETT----TE
T ss_pred cCCCCEEEEecCCC-----CcEEEEeccCCCCcccCcEEEEECCCC---CC-CCCeeEEC--CCCCEEEEEcCC----CE
Confidence 2 34688876433 45888876 4554432 1111100 00 11122333 234577654221 25
Q ss_pred EEEEEcccCCccccccCCCCCCCCceEeecCC
Q 010115 381 VEVLSIEKNESSMGRRSTPNAKGPGQLLFEKR 412 (518)
Q Consensus 381 v~~yd~~~~~w~~~~~~~~~~~~~~~~vfgG~ 412 (518)
|.+||+++.+..... ..+ ...+..+.|+|.
T Consensus 222 v~~~d~~tG~~~~~i-~~p-~~~~t~~~f~g~ 251 (297)
T 3g4e_A 222 VIRLDPVTGKRLQTV-KLP-VDKTTSCCFGGK 251 (297)
T ss_dssp EEEECTTTCCEEEEE-ECS-SSBEEEEEEESG
T ss_pred EEEEcCCCceEEEEE-ECC-CCCceEEEEeCC
Confidence 999999866532221 112 144566778764
No 177
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=93.09 E-value=7.8 Score=38.70 Aligned_cols=160 Identities=9% Similarity=0.012 Sum_probs=80.5
Q ss_pred CEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcE
Q 010115 157 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTW 236 (518)
Q Consensus 157 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W 236 (518)
+++++.|+.+. .+..||+.+.+.......+ ........... ++.+++.|+.+ ..+.+||+.+.+.
T Consensus 210 ~~~l~s~~~d~------~i~vwd~~~~~~~~~~~~~--h~~~v~~~~~s-d~~~l~s~~~d------~~v~vwd~~~~~~ 274 (450)
T 2vdu_B 210 HQFIITSDRDE------HIKISHYPQCFIVDKWLFG--HKHFVSSICCG-KDYLLLSAGGD------DKIFAWDWKTGKN 274 (450)
T ss_dssp CEEEEEEETTS------CEEEEEESCTTCEEEECCC--CSSCEEEEEEC-STTEEEEEESS------SEEEEEETTTCCE
T ss_pred CcEEEEEcCCC------cEEEEECCCCceeeeeecC--CCCceEEEEEC-CCCEEEEEeCC------CeEEEEECCCCcE
Confidence 77888887643 5788888776643321101 11111222222 66777777744 3588899888764
Q ss_pred EEeecCCC----------C-----------CCCCCCcEEEEEC-CcEEEEEcCCCCCCCCCcEEEEEc--C-CCeEEEee
Q 010115 237 LPLHCTGT----------G-----------PSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDF--E-TMIWTRIK 291 (518)
Q Consensus 237 ~~~~~~g~----------~-----------p~~r~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~--~-~~~W~~v~ 291 (518)
...-.... . +.......++... ++.|++.++.+ +.+..||+ . ...+..+.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d-----~~i~iw~~~~~~~~~l~~~~ 349 (450)
T 2vdu_B 275 LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEAT-----KCIIILEMSEKQKGDLALKQ 349 (450)
T ss_dssp EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTC-----SEEEEEEECSSSTTCEEEEE
T ss_pred eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCC-----CeEEEEEeccCCCCceeecc
Confidence 33221000 0 1111112223333 44344433222 35888888 3 34455554
Q ss_pred cCCCCCCCCcceEEEEECCEEEEEcccCCC----CCcCeEEEEECCCCceEE
Q 010115 292 IRGFHPSPRAGCCGVLCGTKWYIAGGGSRK----KRHAETLIFDILKGEWSV 339 (518)
Q Consensus 292 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~----~~~~~v~~yd~~~~~W~~ 339 (518)
.. +......+.+...+.+++..+.... ...-++|.++..++.|+.
T Consensus 350 ~~---~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~~~ 398 (450)
T 2vdu_B 350 II---TFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSFVV 398 (450)
T ss_dssp EE---ECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTTEEEE
T ss_pred Ee---ccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCCeEEE
Confidence 43 1112223444456777777654321 223367888888888863
No 178
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=93.08 E-value=11 Score=40.33 Aligned_cols=123 Identities=11% Similarity=0.048 Sum_probs=68.3
Q ss_pred EEEECCEEEEEcCcCCCCCCceeEEEEECCCCc--EEEeeecCCC-----CCCCcceEEEEECCEEEEEcccCCCCcccC
Q 010115 152 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDI-----PVARSGHTVVRASSVLILFGGEDGKRRKLN 224 (518)
Q Consensus 152 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 224 (518)
-++.++.||+.... ..++.+|..|++ |+.-...... .......+.++.+++||+... -.
T Consensus 62 P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------dg 127 (668)
T 1kv9_A 62 PLFHDGVIYTSMSW-------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-------DG 127 (668)
T ss_dssp CEEETTEEEEEEGG-------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-------TS
T ss_pred CEEECCEEEEECCC-------CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC-------CC
Confidence 35679999998653 358999998876 8864321100 000112334567888887531 14
Q ss_pred cEEEEEcCCCc--EEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCe--EEEe
Q 010115 225 DLHMFDLKSLT--WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRI 290 (518)
Q Consensus 225 ~~~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~v 290 (518)
.++.+|.++.+ |+.-... .........+.++.++. +|+..+.........++.||+++.+ |+.-
T Consensus 128 ~l~alD~~tG~~~W~~~~~~-~~~~~~~~~~P~v~~~~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 128 RLIALDAKTGKAIWSQQTTD-PAKPYSITGAPRVVKGK-VIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp EEEEEETTTCCEEEEEECSC-TTSSCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEEEECCCCCEeeeeccCC-CCCcceecCCCEEECCE-EEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 58999988764 8765311 10111122233445555 5553221111234579999997654 8764
No 179
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=92.99 E-value=1.9 Score=46.47 Aligned_cols=212 Identities=9% Similarity=0.017 Sum_probs=106.8
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCcc-ceEEEEECCEEEEEcCcCCCC-------
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACR-GHSLISWGKKVLLVGGKTDSG------- 169 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~~iyv~GG~~~~~------- 169 (518)
+++.++|.-.........++++|+.+.+... .. ..+... ......-+++.++++......
T Consensus 131 DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-~~-----------~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~ 198 (695)
T 2bkl_A 131 DGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-VD-----------VIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDER 198 (695)
T ss_dssp TSSEEEEEEEETTCSCCEEEEEETTTCCBCS-SC-----------CBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGG
T ss_pred CCCEEEEEECCCCCceEEEEEEECCCCCCcC-Cc-----------ccCcccccceEEecCCCEEEEEEecCCCCCccccC
Confidence 4554444322111223578999999877531 10 011111 111222255555555443211
Q ss_pred CCceeEEEEECCCCcE--EEeeecCCCCC-CCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCC
Q 010115 170 SDRVSVWTFDTETECW--SVVEAKGDIPV-ARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTG 245 (518)
Q Consensus 170 ~~~~~v~~yd~~t~~W--~~~~~~~~~p~-~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~ 245 (518)
.....++++++.+..- ..+.. .+. ......... -+++.+++...... ..+++|.+|..+..|..+...
T Consensus 199 ~~~~~v~~~~l~t~~~~~~lv~~---~~~~~~~~~~~~~SpDG~~l~~~~~~~~--~~~~l~~~~~~~~~~~~l~~~--- 270 (695)
T 2bkl_A 199 PGYTTIRYHTLGTEPSKDTVVHE---RTGDPTTFLQSDLSRDGKYLFVYILRGW--SENDVYWKRPGEKDFRLLVKG--- 270 (695)
T ss_dssp GGGCEEEEEETTSCGGGCEEEEC---CCCCTTCEEEEEECTTSCCEEEEEEETT--TEEEEEEECTTCSSCEEEEEC---
T ss_pred CCCCEEEEEECCCCchhceEEEe---cCCCCEEEEEEEECCCCCEEEEEEeCCC--CceEEEEEcCCCCceEEeecC---
Confidence 1234699999988763 23322 111 122222222 23444444433321 245788888777788887521
Q ss_pred CCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCe---EEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCC
Q 010115 246 PSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI---WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKK 322 (518)
Q Consensus 246 p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~---W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 322 (518)
.. .....+..+++ +|+....+ .....|+++|+++.. |+.+.... + ...-......++++++....+.
T Consensus 271 -~~-~~~~~~~~~g~-l~~~s~~~--~~~~~l~~~d~~~~~~~~~~~l~~~~--~-~~~l~~~~~~~~~lv~~~~~dg-- 340 (695)
T 2bkl_A 271 -VG-AKYEVHAWKDR-FYVLTDEG--APRQRVFEVDPAKPARASWKEIVPED--S-SASLLSVSIVGGHLSLEYLKDA-- 340 (695)
T ss_dssp -SS-CCEEEEEETTE-EEEEECTT--CTTCEEEEEBTTBCSGGGCEEEECCC--S-SCEEEEEEEETTEEEEEEEETT--
T ss_pred -CC-ceEEEEecCCc-EEEEECCC--CCCCEEEEEeCCCCCccCCeEEecCC--C-CCeEEEEEEECCEEEEEEEECC--
Confidence 11 11222335667 77775432 224579999987654 88876431 1 1112233334888888765433
Q ss_pred CcCeEEEEECCCCceEEe
Q 010115 323 RHAETLIFDILKGEWSVA 340 (518)
Q Consensus 323 ~~~~v~~yd~~~~~W~~~ 340 (518)
...++.+++....-..+
T Consensus 341 -~~~l~~~~~~g~~~~~l 357 (695)
T 2bkl_A 341 -TSEVRVATLKGKPVRTV 357 (695)
T ss_dssp -EEEEEEEETTCCEEEEC
T ss_pred -EEEEEEEeCCCCeeEEe
Confidence 25688898866544444
No 180
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=92.92 E-value=5.6 Score=36.58 Aligned_cols=198 Identities=7% Similarity=-0.059 Sum_probs=108.8
Q ss_pred eEEEEE--CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCC
Q 010115 92 HAAAVI--GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTD 167 (518)
Q Consensus 92 ~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~ 167 (518)
++.++. ++.||+.-.. .+.++++++....-..+... ....-+.++.. ++.||+.-..
T Consensus 39 ~gi~~d~~~~~ly~~d~~-----~~~I~~~~~~g~~~~~~~~~------------~~~~p~~ia~d~~~~~lyv~d~~-- 99 (267)
T 1npe_A 39 IGLAFDCVDKVVYWTDIS-----EPSIGRASLHGGEPTTIIRQ------------DLGSPEGIALDHLGRTIFWTDSQ-- 99 (267)
T ss_dssp EEEEEETTTTEEEEEETT-----TTEEEEEESSSCCCEEEECT------------TCCCEEEEEEETTTTEEEEEETT--
T ss_pred EEEEEecCCCEEEEEECC-----CCEEEEEecCCCCcEEEEEC------------CCCCccEEEEEecCCeEEEEECC--
Confidence 455554 4689987542 25689999987543332210 00122455554 5799998543
Q ss_pred CCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCC
Q 010115 168 SGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTG 245 (518)
Q Consensus 168 ~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~ 245 (518)
...++++++....-+.+...+ +. .-..+++. ++.||+..... ....++++++....-+.+... .+
T Consensus 100 ----~~~I~~~~~~g~~~~~~~~~~-~~---~P~~i~vd~~~g~lyv~~~~~----~~~~I~~~~~dg~~~~~~~~~-~~ 166 (267)
T 1npe_A 100 ----LDRIEVAKMDGTQRRVLFDTG-LV---NPRGIVTDPVRGNLYWTDWNR----DNPKIETSHMDGTNRRILAQD-NL 166 (267)
T ss_dssp ----TTEEEEEETTSCSCEEEECSS-CS---SEEEEEEETTTTEEEEEECCS----SSCEEEEEETTSCCCEEEECT-TC
T ss_pred ----CCEEEEEEcCCCCEEEEEECC-CC---CccEEEEeeCCCEEEEEECCC----CCcEEEEEecCCCCcEEEEEC-CC
Confidence 236889998765434333211 11 12344443 58999975321 125688888865443333211 11
Q ss_pred CCCCCCcEEEEEC-CcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCCCc
Q 010115 246 PSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRH 324 (518)
Q Consensus 246 p~~r~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 324 (518)
. .-..+++-. ++.||+.-.. .+.|+++|+.+..-..+.... ..| .+++..++.+|+.....
T Consensus 167 ~---~P~gia~d~~~~~lyv~d~~-----~~~I~~~~~~g~~~~~~~~~~--~~P---~gi~~d~~~lyva~~~~----- 228 (267)
T 1npe_A 167 G---LPNGLTFDAFSSQLCWVDAG-----THRAECLNPAQPGRRKVLEGL--QYP---FAVTSYGKNLYYTDWKT----- 228 (267)
T ss_dssp S---CEEEEEEETTTTEEEEEETT-----TTEEEEEETTEEEEEEEEECC--CSE---EEEEEETTEEEEEETTT-----
T ss_pred C---CCcEEEEcCCCCEEEEEECC-----CCEEEEEecCCCceEEEecCC--CCc---eEEEEeCCEEEEEECCC-----
Confidence 1 112334433 4558887532 357999999765433332221 222 34455688999975432
Q ss_pred CeEEEEECCCCceEE
Q 010115 325 AETLIFDILKGEWSV 339 (518)
Q Consensus 325 ~~v~~yd~~~~~W~~ 339 (518)
+.++++|+.+.+-..
T Consensus 229 ~~v~~~d~~~g~~~~ 243 (267)
T 1npe_A 229 NSVIAMDLAISKEMD 243 (267)
T ss_dssp TEEEEEETTTTEEEE
T ss_pred CeEEEEeCCCCCceE
Confidence 459999998876544
No 181
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=92.91 E-value=8.1 Score=41.75 Aligned_cols=150 Identities=13% Similarity=0.105 Sum_probs=80.4
Q ss_pred eeEEEEECCCCcE--EEeeecCCCCCCCcceEEEE-ECC-EEEEEcccCCCCcccCcEEEEEcCCC--c-EEEeecCCCC
Q 010115 173 VSVWTFDTETECW--SVVEAKGDIPVARSGHTVVR-ASS-VLILFGGEDGKRRKLNDLHMFDLKSL--T-WLPLHCTGTG 245 (518)
Q Consensus 173 ~~v~~yd~~t~~W--~~~~~~~~~p~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~--~-W~~~~~~g~~ 245 (518)
..+|++++.+..- ..+.. ....+........ -++ .|++....... ..++++++|+.+. . |..+.. .
T Consensus 243 ~~v~~~~lgt~~~~~~lv~~--~~~~~~~~~~~~~SpDG~~l~~~~~~~~~--~~~~l~~~d~~~~~~~~~~~l~~---~ 315 (741)
T 1yr2_A 243 QTVWLHRLGTPQSADQPVFA--TPELPKRGHGASVSSDGRWVVITSSEGTD--PVNTVHVARVTNGKIGPVTALIP---D 315 (741)
T ss_dssp CEEEEEETTSCGGGCEEEEC--CTTCTTCEEEEEECTTSCEEEEEEECTTC--SCCEEEEEEEETTEECCCEEEEC---S
T ss_pred CEEEEEECCCCchhCEEEec--cCCCCeEEEEEEECCCCCEEEEEEEccCC--CcceEEEEECCCCCCcccEEecC---C
Confidence 4688999877652 22221 1111222222222 244 44444332211 2468999999877 6 888752 1
Q ss_pred CCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCC--CeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCCC
Q 010115 246 PSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET--MIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKR 323 (518)
Q Consensus 246 p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~--~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 323 (518)
... ....+..+++.||+....+ .....|+.+|+++ ..|+.+.+.. .. .-......++++++....+.
T Consensus 316 ~~~--~~~~~~~dg~~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~l~~~~--~~--~l~~~~~~~~~lv~~~~~dg--- 384 (741)
T 1yr2_A 316 LKA--QWDFVDGVGDQLWFVSGDG--APLKKIVRVDLSGSTPRFDTVVPES--KD--NLESVGIAGNRLFASYIHDA--- 384 (741)
T ss_dssp SSS--CEEEEEEETTEEEEEECTT--CTTCEEEEEECSSSSCEEEEEECCC--SS--EEEEEEEEBTEEEEEEEETT---
T ss_pred CCc--eEEEEeccCCEEEEEECCC--CCCCEEEEEeCCCCccccEEEecCC--CC--eEEEEEEECCEEEEEEEECC---
Confidence 111 1222234556577765432 2245799999987 5799886431 11 11223334788877765433
Q ss_pred cCeEEEEECCCCceEEe
Q 010115 324 HAETLIFDILKGEWSVA 340 (518)
Q Consensus 324 ~~~v~~yd~~~~~W~~~ 340 (518)
...++++|+....-..+
T Consensus 385 ~~~l~~~~~~g~~~~~l 401 (741)
T 1yr2_A 385 KSQVLAFDLDGKPAGAV 401 (741)
T ss_dssp EEEEEEEETTSCEEEEC
T ss_pred EEEEEEEeCCCCceeec
Confidence 25688898866544444
No 182
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=92.87 E-value=6.1 Score=36.90 Aligned_cols=194 Identities=11% Similarity=0.117 Sum_probs=89.1
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCC--cEEEcccccccCCCCCCCCCCCccceEEEEE---CCEEEEEcCcCCCCCCc
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISW---GKKVLLVGGKTDSGSDR 172 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~ 172 (518)
++.+++.|+.+ ..+.+||..+. .++..... ......-.+++.. ++.+++.|+.+.
T Consensus 22 ~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~d~~~l~s~~~dg----- 81 (351)
T 3f3f_A 22 YGRHVATCSSD-----QHIKVFKLDKDTSNWELSDSW----------RAHDSSIVAIDWASPEYGRIIASASYDK----- 81 (351)
T ss_dssp SSSEEEEEETT-----SEEEEEEECSSSCCEEEEEEE----------ECCSSCEEEEEECCGGGCSEEEEEETTS-----
T ss_pred CCCEEEEeeCC-----CeEEEEECCCCCCcceeccee----------ccCCCcEEEEEEcCCCCCCEEEEEcCCC-----
Confidence 45566666644 35778887643 44443321 0111111222222 266777777643
Q ss_pred eeEEEEECCCC-------cEEEeeecCCCCCCCc-ceEEEEE-C--CEEEEEcccCCCCcccCcEEEEEcCCCc----EE
Q 010115 173 VSVWTFDTETE-------CWSVVEAKGDIPVARS-GHTVVRA-S--SVLILFGGEDGKRRKLNDLHMFDLKSLT----WL 237 (518)
Q Consensus 173 ~~v~~yd~~t~-------~W~~~~~~~~~p~~r~-~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~yd~~t~~----W~ 237 (518)
.+..||+.+. .|..+.. +..... -.+++.. + +.+++.|+.++ .+.+||+.+.+ |.
T Consensus 82 -~v~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~dg------~v~iwd~~~~~~~~~~~ 151 (351)
T 3f3f_A 82 -TVKLWEEDPDQEECSGRRWNKLCT---LNDSKGSLYSVKFAPAHLGLKLACLGNDG------ILRLYDALEPSDLRSWT 151 (351)
T ss_dssp -CEEEEEECTTSCTTSSCSEEEEEE---ECCCSSCEEEEEECCGGGCSEEEEEETTC------EEEEEECSSTTCTTCCE
T ss_pred -eEEEEecCCCcccccccCcceeee---ecccCCceeEEEEcCCCCCcEEEEecCCC------cEEEecCCChHHhcccc
Confidence 4666776653 3454443 111111 1222222 2 56666766543 47888876543 32
Q ss_pred Ee---ecCCCCC--CCCCCcEEEEEC----CcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE
Q 010115 238 PL---HCTGTGP--SPRSNHVAALYD----DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC 308 (518)
Q Consensus 238 ~~---~~~g~~p--~~r~~~~~~~~~----~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~ 308 (518)
.. ......+ ......+.+... +. +++.|+.++ .+..++........+...... ...-.+++..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~h--~~~i~~~~~~ 223 (351)
T 3f3f_A 152 LTSEMKVLSIPPANHLQSDFCLSWCPSRFSPE-KLAVSALEQ-----AIIYQRGKDGKLHVAAKLPGH--KSLIRSISWA 223 (351)
T ss_dssp EEEEEESCSCCCSSCSCCCEEEEECCCSSSCC-EEEEEETTE-----EEEEEECTTSCEEEEEECCCC--CSCEEEEEEC
T ss_pred ccccccccccccCCcccceeEEEeccCCCCCc-EEEEecCCC-----cEEEEccCCCceeeeeecCCC--CcceeEEEEC
Confidence 21 1000111 111112222222 45 666666543 345555566665555443111 1111223333
Q ss_pred -CC----EEEEEcccCCCCCcCeEEEEECCC
Q 010115 309 -GT----KWYIAGGGSRKKRHAETLIFDILK 334 (518)
Q Consensus 309 -~~----~iyv~GG~~~~~~~~~v~~yd~~~ 334 (518)
++ ++++.|+.++. +.+||+.+
T Consensus 224 p~~~~~~~~l~s~~~dg~-----i~iwd~~~ 249 (351)
T 3f3f_A 224 PSIGRWYQLIATGCKDGR-----IRIFKITE 249 (351)
T ss_dssp CCSSCSSEEEEEEETTSC-----EEEEEEEE
T ss_pred CCCCCcceEEEEEcCCCe-----EEEEeCCC
Confidence 33 78888876544 66666654
No 183
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=92.86 E-value=4.1 Score=38.01 Aligned_cols=192 Identities=14% Similarity=0.103 Sum_probs=97.4
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCC
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~ 234 (518)
++.+|+.+.... .+++||+.+. .+.... +.. .-.+++. -++.+|+.... ...+.+||+.+.
T Consensus 39 g~~l~~~~~~~~------~i~~~~~~~~-~~~~~~----~~~-~~~~l~~~~dg~l~v~~~~------~~~i~~~d~~~g 100 (296)
T 3e5z_A 39 RSAVIFSDVRQN------RTWAWSDDGQ-LSPEMH----PSH-HQNGHCLNKQGHLIACSHG------LRRLERQREPGG 100 (296)
T ss_dssp GTEEEEEEGGGT------EEEEEETTSC-EEEEES----SCS-SEEEEEECTTCCEEEEETT------TTEEEEECSTTC
T ss_pred CCEEEEEeCCCC------EEEEEECCCC-eEEEEC----CCC-CcceeeECCCCcEEEEecC------CCeEEEEcCCCC
Confidence 345888876532 6999999988 655542 221 1233443 35678776421 145899999888
Q ss_pred cEEEeecC-CCCCCCCCCcEEEEECCcEEEEE----cCCC--------CCCCCCcEEEEEcCCCeEEEeecCCCCCCCCc
Q 010115 235 TWLPLHCT-GTGPSPRSNHVAALYDDKNLLIF----GGSS--------KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRA 301 (518)
Q Consensus 235 ~W~~~~~~-g~~p~~r~~~~~~~~~~~~lyv~----GG~~--------~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~ 301 (518)
+.+.+... ...+..+.. .+++..+..+|+. |... .......++++++. .+...+.... ..+
T Consensus 101 ~~~~~~~~~~~~~~~~~~-~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~--~~~-- 174 (296)
T 3e5z_A 101 EWESIADSFEGKKLNSPN-DVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDR--VKP-- 174 (296)
T ss_dssp CEEEEECEETTEECCCCC-CEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCC--SSE--
T ss_pred cEEEEeeccCCCCCCCCC-CEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCC--CCC--
Confidence 87766421 011111122 2334444447875 3211 01113479999987 5555543221 111
Q ss_pred ceEEEEE-CCEEEEEcccCCCCCcCeEEEEECC-CCce-EEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCC
Q 010115 302 GCCGVLC-GTKWYIAGGGSRKKRHAETLIFDIL-KGEW-SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPS 378 (518)
Q Consensus 302 ~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~-~~~W-~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~ 378 (518)
.+.+.. ++++++..... ..+++||+. +++. ............+ .+ +++.. ++.||+..+
T Consensus 175 -~gi~~s~dg~~lv~~~~~-----~~i~~~~~~~~g~~~~~~~~~~~~~~~p---~~-i~~d~--~G~l~v~~~------ 236 (296)
T 3e5z_A 175 -NGLAFLPSGNLLVSDTGD-----NATHRYCLNARGETEYQGVHFTVEPGKT---DG-LRVDA--GGLIWASAG------ 236 (296)
T ss_dssp -EEEEECTTSCEEEEETTT-----TEEEEEEECSSSCEEEEEEEECCSSSCC---CS-EEEBT--TSCEEEEET------
T ss_pred -ccEEECCCCCEEEEeCCC-----CeEEEEEECCCCcCcCCCeEeeCCCCCC---Ce-EEECC--CCCEEEEcC------
Confidence 223332 56666544322 358999986 5555 2211111110111 12 23332 345777661
Q ss_pred CcEEEEEcccC
Q 010115 379 NQVEVLSIEKN 389 (518)
Q Consensus 379 ~~v~~yd~~~~ 389 (518)
+.|.+||++..
T Consensus 237 ~~v~~~~~~g~ 247 (296)
T 3e5z_A 237 DGVHVLTPDGD 247 (296)
T ss_dssp TEEEEECTTSC
T ss_pred CeEEEECCCCC
Confidence 36899998744
No 184
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=92.65 E-value=9.5 Score=41.20 Aligned_cols=223 Identities=11% Similarity=0.017 Sum_probs=107.7
Q ss_pred ECCEEEEEcCcCCCCCCCcEEEEEcC---CCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCC
Q 010115 97 IGNKMIVVGGESGNGLLDDVQVLNFD---RFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSD 171 (518)
Q Consensus 97 ~~~~lyv~GG~~~~~~~~~v~~yd~~---~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~ 171 (518)
.++.+|.+-- ........+|+.+.. ...|+.+-..... ............+ +++.++++.... +..
T Consensus 117 dG~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l-------~~~~~~~~~~~~~SPDG~~la~~~~~~-G~e 187 (741)
T 1yr2_A 117 RGASVFYSWN-SGLMNQSQLLVRPADAPVGTKGRVLLDPNTW-------AKDGATALDAWAASDDGRLLAYSVQDG-GSD 187 (741)
T ss_dssp ETTEEEEEEE-CSSCSSCEEEEEETTSCTTCCCEEEECGGGC-------C----EEEEEEEECTTSSEEEEEEEET-TCS
T ss_pred ECCEEEEEEE-cCCCeEEEEEEEcCCccCCCCCEEEECHHHh-------ccCCCEEEEeEEECCCCCEEEEEEcCC-CCc
Confidence 4555554432 111224567888876 6677775331100 0000011112222 455555543321 223
Q ss_pred ceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCC--------CcccCcEEEEEcCCCcE--EEeec
Q 010115 172 RVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGK--------RRKLNDLHMFDLKSLTW--LPLHC 241 (518)
Q Consensus 172 ~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~--------~~~~~~~~~yd~~t~~W--~~~~~ 241 (518)
...++++|+.+++...... +.... ...+...++-++++..+.. ......++++++.+..- ..+..
T Consensus 188 ~~~i~v~dl~tg~~~~~~~----~~~~~-~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~ 262 (741)
T 1yr2_A 188 WRTVKFVGVADGKPLADEL----KWVKF-SGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFA 262 (741)
T ss_dssp EEEEEEEETTTCCEEEEEE----EEEES-CCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEEC
T ss_pred eEEEEEEECCCCCCCCccC----CCcee-ccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEec
Confidence 3579999999998765432 11111 1122222233333333221 01245688899876542 12220
Q ss_pred CCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC--e-EEEeecCCCCCCCCcceEEEEECCEEEEEccc
Q 010115 242 TGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM--I-WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGG 318 (518)
Q Consensus 242 ~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~-W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 318 (518)
....+..........+...+++.........++++.+|+++. . |+.+... ..... ......++.||+....
T Consensus 263 --~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~---~~~~~-~~~~~dg~~l~~~s~~ 336 (741)
T 1yr2_A 263 --TPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD---LKAQW-DFVDGVGDQLWFVSGD 336 (741)
T ss_dssp --CTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS---SSSCE-EEEEEETTEEEEEECT
T ss_pred --cCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC---CCceE-EEEeccCCEEEEEECC
Confidence 111122233333333332344433322223568999999877 6 8888653 11211 1222347788877543
Q ss_pred CCCCCcCeEEEEECCC--CceEEee
Q 010115 319 SRKKRHAETLIFDILK--GEWSVAI 341 (518)
Q Consensus 319 ~~~~~~~~v~~yd~~~--~~W~~~~ 341 (518)
. .....++.+|+++ ..|+.+.
T Consensus 337 ~--~~~~~l~~~d~~~~~~~~~~l~ 359 (741)
T 1yr2_A 337 G--APLKKIVRVDLSGSTPRFDTVV 359 (741)
T ss_dssp T--CTTCEEEEEECSSSSCEEEEEE
T ss_pred C--CCCCEEEEEeCCCCccccEEEe
Confidence 2 2236799999988 5798876
No 185
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=92.65 E-value=0.72 Score=53.21 Aligned_cols=188 Identities=10% Similarity=0.068 Sum_probs=93.5
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCCCceeEEE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWT 177 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 177 (518)
++..+++|+.+ ..+.+||..+........ . ...........-+++.++.|+.++ .+..
T Consensus 972 ~g~~l~~g~~~-----g~i~i~d~~~~~~~~~~~----------~-h~~~v~~l~~s~dg~~l~s~~~dg------~i~v 1029 (1249)
T 3sfz_A 972 HLEYVAFGDED-----GAIKIIELPNNRVFSSGV----------G-HKKAVRHIQFTADGKTLISSSEDS------VIQV 1029 (1249)
T ss_dssp TSSEEEEEETT-----SCCEEEETTTTSCEEECC----------C-CSSCCCCEEECSSSSCEEEECSSS------BEEE
T ss_pred CCCEEEEEcCC-----CCEEEEEcCCCceeeecc----------c-CCCceEEEEECCCCCEEEEEcCCC------EEEE
Confidence 44566666543 357888887764332211 0 001111112222566667776543 5888
Q ss_pred EECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEE
Q 010115 178 FDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY 257 (518)
Q Consensus 178 yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~ 257 (518)
||..+.+...... ....-.++....+..++.|+.++ .+.+||+.+.+-...- ........ +++..
T Consensus 1030 wd~~~~~~~~~~~-----~~~~v~~~~~~~~~~l~~~~~dg------~v~vwd~~~~~~~~~~---~~~~~~v~-~~~~s 1094 (1249)
T 3sfz_A 1030 WNWQTGDYVFLQA-----HQETVKDFRLLQDSRLLSWSFDG------TVKVWNVITGRIERDF---TCHQGTVL-SCAIS 1094 (1249)
T ss_dssp EETTTTEEECCBC-----CSSCEEEEEECSSSEEEEEESSS------EEEEEETTTTCCCEEE---ECCSSCCC-CEEEC
T ss_pred EECCCCceEEEec-----CCCcEEEEEEcCCCcEEEEECCC------cEEEEECCCCceeEEE---cccCCcEE-EEEEC
Confidence 9999887654331 11122233333444455555443 4888998776533221 11112222 23333
Q ss_pred CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCCC
Q 010115 258 DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKG 335 (518)
Q Consensus 258 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 335 (518)
.+..+++.|+.++ .+..||..+.. .+... ........++.+ ++++++.|+.++. +.+||+.+.
T Consensus 1095 ~d~~~l~s~s~d~-----~v~iwd~~~~~--~~~~l---~~h~~~v~~~~~s~dg~~lat~~~dg~-----i~vwd~~~~ 1159 (1249)
T 3sfz_A 1095 SDATKFSSTSADK-----TAKIWSFDLLS--PLHEL---KGHNGCVRCSAFSLDGILLATGDDNGE-----IRIWNVSDG 1159 (1249)
T ss_dssp SSSSSCEEECCSS-----CCCEECSSSSS--CSBCC---CCCSSCEEEEEECSSSSEEEEEETTSC-----CCEEESSSS
T ss_pred CCCCEEEEEcCCC-----cEEEEECCCcc--eeeee---ccCCCcEEEEEECCCCCEEEEEeCCCE-----EEEEECCCC
Confidence 3332677776654 36777776543 11111 111111122233 6778888876544 778888775
Q ss_pred ce
Q 010115 336 EW 337 (518)
Q Consensus 336 ~W 337 (518)
+.
T Consensus 1160 ~~ 1161 (1249)
T 3sfz_A 1160 QL 1161 (1249)
T ss_dssp CC
T ss_pred ce
Confidence 54
No 186
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=92.59 E-value=8.8 Score=38.98 Aligned_cols=101 Identities=18% Similarity=0.284 Sum_probs=55.8
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCc--E-EEeeec-CCCCCCCcceEEEE-----ECCEEEEEcccCCCCcccCcE
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETEC--W-SVVEAK-GDIPVARSGHTVVR-----ASSVLILFGGEDGKRRKLNDL 226 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W-~~~~~~-~~~p~~r~~~~~~~-----~~~~iyv~GG~~~~~~~~~~~ 226 (518)
++++|+|=|. .+|+|+-.... . +.+... ..+|. ....+... .++++|+|-| +..
T Consensus 107 ~g~~yfFkG~--------~yW~~~~~~~~~GYPk~I~~~fpGlp~-~IDAA~~~~~~~~~~~~~yfFkG--------~~y 169 (460)
T 1qhu_A 107 HTSVYLIKGD--------KVWVYTSEKNEKVYPKSLQDEFPGIPF-PLDAAVECHRGECQDEGILFFQG--------NRK 169 (460)
T ss_dssp TTEEEEEETT--------EEEEECC-------CEEHHHHSTTCCS-SCCEEEEECBBTBSSSEEEEEET--------TEE
T ss_pred CCcEEEEecc--------EEEEEeCCcccCCCCeEhhhccCCCCC-CeeEEEECCccCCCCCeEEEEec--------ccE
Confidence 5899999664 58888643211 0 111110 12443 23322221 2678898866 347
Q ss_pred EEEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC
Q 010115 227 HMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM 285 (518)
Q Consensus 227 ~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~ 285 (518)
|+||..+.+...-.-. .+| .. -++....++ +|+|-|. ..|+||..+.
T Consensus 170 w~yd~~~~~~~~~~w~-gi~--~i-DAA~~~~g~-~YfFkG~-------~y~rfd~~~~ 216 (460)
T 1qhu_A 170 WFWDLTTGTKKERSWP-AVG--NC-TSALRWLGR-YYCFQGN-------QFLRFNPVSG 216 (460)
T ss_dssp EEEETTTTEEEEECCT-TSC--CC-SEEEEETTE-EEEEETT-------EEEEECTTTC
T ss_pred EEEecccceeecccCC-CCC--cc-chheeeCCc-eEEEECC-------EEEEEcCccC
Confidence 9999988766543211 222 22 344455665 8999773 6888887654
No 187
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=92.58 E-value=12 Score=39.75 Aligned_cols=189 Identities=8% Similarity=0.083 Sum_probs=92.2
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCC
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~ 234 (518)
++++++.|+.+. .+..+|+.+.+-...-. -.. ..-.+++. .++..++.|+.+. .+.++|....
T Consensus 441 ~g~~l~sgs~Dg------~v~vwd~~~~~~~~~~~---~h~-~~v~~~~~s~~~~~l~s~s~D~------~i~iwd~~~~ 504 (694)
T 3dm0_A 441 DGQFALSGSWDG------ELRLWDLAAGVSTRRFV---GHT-KDVLSVAFSLDNRQIVSASRDR------TIKLWNTLGE 504 (694)
T ss_dssp TSSEEEEEETTS------EEEEEETTTTEEEEEEE---CCS-SCEEEEEECTTSSCEEEEETTS------CEEEECTTSC
T ss_pred CCCEEEEEeCCC------cEEEEECCCCcceeEEe---CCC-CCEEEEEEeCCCCEEEEEeCCC------EEEEEECCCC
Confidence 567777777653 68889988875433221 011 11122222 2456667776654 3667776544
Q ss_pred cEEEeecCCCCCCCCCCc-EEEEECC--cEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CC
Q 010115 235 TWLPLHCTGTGPSPRSNH-VAALYDD--KNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GT 310 (518)
Q Consensus 235 ~W~~~~~~g~~p~~r~~~-~~~~~~~--~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~ 310 (518)
.-..+.. .....+... +++...+ ..+++.|+.++ .|..||+.+..-...-.. .. ..-.+++.. ++
T Consensus 505 ~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~-----~v~vwd~~~~~~~~~~~~---h~-~~v~~v~~spdg 573 (694)
T 3dm0_A 505 CKYTISE--GGEGHRDWVSCVRFSPNTLQPTIVSASWDK-----TVKVWNLSNCKLRSTLAG---HT-GYVSTVAVSPDG 573 (694)
T ss_dssp EEEEECS--STTSCSSCEEEEEECSCSSSCEEEEEETTS-----CEEEEETTTCCEEEEECC---CS-SCEEEEEECTTS
T ss_pred cceeecc--CCCCCCCcEEEEEEeCCCCcceEEEEeCCC-----eEEEEECCCCcEEEEEcC---CC-CCEEEEEEeCCC
Confidence 3222221 111111111 2222222 12566666554 488999877653322111 11 111122222 67
Q ss_pred EEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 311 KWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 311 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
++++.|+.++. +.++|+.+.+-.... . .......+.+.. + ..+++.+.. +.+.+||+++.+
T Consensus 574 ~~l~sg~~Dg~-----i~iwd~~~~~~~~~~--~-----~~~~v~~~~~sp-~-~~~l~~~~~-----~~i~iwd~~~~~ 634 (694)
T 3dm0_A 574 SLCASGGKDGV-----VLLWDLAEGKKLYSL--E-----ANSVIHALCFSP-N-RYWLCAATE-----HGIKIWDLESKS 634 (694)
T ss_dssp SEEEEEETTSB-----CEEEETTTTEEEECC--B-----CSSCEEEEEECS-S-SSEEEEEET-----TEEEEEETTTTE
T ss_pred CEEEEEeCCCe-----EEEEECCCCceEEEe--c-----CCCcEEEEEEcC-C-CcEEEEEcC-----CCEEEEECCCCC
Confidence 78888876543 888998877533211 1 111223333432 2 334444432 258888887764
No 188
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=92.43 E-value=17 Score=41.60 Aligned_cols=145 Identities=14% Similarity=0.069 Sum_probs=71.8
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCceeE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSV 175 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v 175 (518)
++++++.||.+ ..+.+||..+..-...-. ... ..-.++.+ +++.++.|+.+. .+
T Consensus 626 ~~~~l~s~~~d-----~~i~vw~~~~~~~~~~~~------------~h~-~~v~~~~~s~~~~~l~s~~~d~------~v 681 (1249)
T 3sfz_A 626 DGQRIASCGAD-----KTLQVFKAETGEKLLDIK------------AHE-DEVLCCAFSSDDSYIATCSADK------KV 681 (1249)
T ss_dssp TSSEEEEEETT-----SCEEEEETTTCCEEEEEC------------CCS-SCEEEEEECTTSSEEEEEETTS------EE
T ss_pred CCCEEEEEeCC-----CeEEEEECCCCCEEEEec------------cCC-CCEEEEEEecCCCEEEEEeCCC------eE
Confidence 56677777754 368899998765332211 001 11122222 566677776533 58
Q ss_pred EEEECCCCcEEEeeecCCCCCCCcceEEEEE---CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCc
Q 010115 176 WTFDTETECWSVVEAKGDIPVARSGHTVVRA---SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 252 (518)
Q Consensus 176 ~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~ 252 (518)
..||..+.+-...-. .... .-.++... ++.+++.|+.+. .+.+||+.+.+....- ..... .-.
T Consensus 682 ~vwd~~~~~~~~~~~---~~~~-~v~~~~~~~~~~~~~l~sg~~d~------~v~vwd~~~~~~~~~~---~~h~~-~v~ 747 (1249)
T 3sfz_A 682 KIWDSATGKLVHTYD---EHSE-QVNCCHFTNKSNHLLLATGSNDF------FLKLWDLNQKECRNTM---FGHTN-SVN 747 (1249)
T ss_dssp EEEETTTCCEEEEEE---CCSS-CEEEEEECSSSSCCEEEEEETTS------CEEEEETTSSSEEEEE---CCCSS-CEE
T ss_pred EEEECCCCceEEEEc---CCCC-cEEEEEEecCCCceEEEEEeCCC------eEEEEECCCcchhhee---cCCCC-CEE
Confidence 889998877543322 1111 11222222 234555555443 3788998877654332 11111 111
Q ss_pred EEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC
Q 010115 253 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM 285 (518)
Q Consensus 253 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~ 285 (518)
+++...+..+++.|+.++ .+..||+.+.
T Consensus 748 ~~~~sp~~~~l~s~s~dg-----~v~vwd~~~~ 775 (1249)
T 3sfz_A 748 HCRFSPDDELLASCSADG-----TLRLWDVRSA 775 (1249)
T ss_dssp EEEECSSTTEEEEEESSS-----EEEEEEGGGT
T ss_pred EEEEecCCCEEEEEECCC-----eEEEEeCCCC
Confidence 223333322556665443 3666666544
No 189
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=92.40 E-value=1.8 Score=41.20 Aligned_cols=155 Identities=7% Similarity=-0.057 Sum_probs=83.4
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCcccCcEEEEEcCCC
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~ 234 (518)
+++||+.+... ..+++||+.+++...+.. .+ ...-++++.. ++++|+....+.. ....+++||+++.
T Consensus 55 ~g~l~~~~~~~------~~i~~~d~~~~~~~~~~~---~~-~~~~~~i~~~~dg~l~v~~~~~~~--~~~~i~~~d~~~~ 122 (333)
T 2dg1_A 55 QGQLFLLDVFE------GNIFKINPETKEIKRPFV---SH-KANPAAIKIHKDGRLFVCYLGDFK--STGGIFAATENGD 122 (333)
T ss_dssp TSCEEEEETTT------CEEEEECTTTCCEEEEEE---CS-SSSEEEEEECTTSCEEEEECTTSS--SCCEEEEECTTSC
T ss_pred CCCEEEEECCC------CEEEEEeCCCCcEEEEee---CC-CCCcceEEECCCCcEEEEeCCCCC--CCceEEEEeCCCC
Confidence 56788876543 269999999998877643 11 1222334443 5678887543311 1256999999887
Q ss_pred cEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCC-CCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CC-E
Q 010115 235 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSS-KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GT-K 311 (518)
Q Consensus 235 ~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~-~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~-~ 311 (518)
..+.+.. .......-..++...+..+|+..... .......++++|+++.+...+.... .. ..+.+.. ++ .
T Consensus 123 ~~~~~~~--~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~---~~~i~~~~dg~~ 195 (333)
T 2dg1_A 123 NLQDIIE--DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNI--SV---ANGIALSTDEKV 195 (333)
T ss_dssp SCEEEEC--SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEE--SS---EEEEEECTTSSE
T ss_pred EEEEEEc--cCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCC--Cc---ccceEECCCCCE
Confidence 7653321 11111222233344344477754321 1112356999999877666553210 11 1223332 33 5
Q ss_pred EEEEcccCCCCCcCeEEEEECCC
Q 010115 312 WYIAGGGSRKKRHAETLIFDILK 334 (518)
Q Consensus 312 iyv~GG~~~~~~~~~v~~yd~~~ 334 (518)
||+..... ..+++||+.+
T Consensus 196 l~v~~~~~-----~~i~~~d~~~ 213 (333)
T 2dg1_A 196 LWVTETTA-----NRLHRIALED 213 (333)
T ss_dssp EEEEEGGG-----TEEEEEEECT
T ss_pred EEEEeCCC-----CeEEEEEecC
Confidence 88765322 4589999853
No 190
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=92.36 E-value=7.9 Score=36.95 Aligned_cols=192 Identities=9% Similarity=0.002 Sum_probs=94.4
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcc--eEEEEECCEEEEEcccCCCCcccCcEEEEEcCC
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSG--HTVVRASSVLILFGGEDGKRRKLNDLHMFDLKS 233 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~--~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t 233 (518)
++.+++.||.++ .+..||..+++-...-..+....-... ...+..++.+.+.- ....+..||..+
T Consensus 47 d~~~l~sg~~Dg------~v~iwd~~~~~~~~~~~~~~v~~~~~~~~~~s~s~D~~i~~w~-------~~~~~~~~~~~~ 113 (343)
T 3lrv_A 47 DKWVCMCRCEDG------ALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLY-------PGNQITILDSKT 113 (343)
T ss_dssp EEEEEEEEEETT------EEEEEEESSSSCEEEEEEECCCTTCCCCSEEEECSTTEEEEEE-------TTTEEEEEETTT
T ss_pred CCCEEEEECCCC------cEEEEECCCCcEEEEEecCCceeeeeCCceEEecCCCeEEEEE-------ccCceEEeecCC
Confidence 566777787754 577788776652211111111111111 11111234444442 123566778777
Q ss_pred Cc-EEEeecCCCCCCCCCCcEEEEEC--CcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-C
Q 010115 234 LT-WLPLHCTGTGPSPRSNHVAALYD--DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-G 309 (518)
Q Consensus 234 ~~-W~~~~~~g~~p~~r~~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~ 309 (518)
.+ ..... .+....-.+++... +..+++.|+.++ .+..||+++.+-..+... .......+++.. +
T Consensus 114 ~~~~~~~~----~~~~~~v~~~~~~~~~~~~~l~s~s~dg-----~i~~wd~~~~~~~~~~~~---~~~~~i~~~~~~pd 181 (343)
T 3lrv_A 114 NKVLREIE----VDSANEIIYMYGHNEVNTEYFIWADNRG-----TIGFQSYEDDSQYIVHSA---KSDVEYSSGVLHKD 181 (343)
T ss_dssp CCEEEEEE----CCCSSCEEEEECCC---CCEEEEEETTC-----CEEEEESSSSCEEEEECC---CSSCCCCEEEECTT
T ss_pred cceeEEee----cCCCCCEEEEEcCCCCCCCEEEEEeCCC-----cEEEEECCCCcEEEEEec---CCCCceEEEEECCC
Confidence 66 33332 11111112233333 233677777654 489999988766444322 111112233333 6
Q ss_pred CEEEEEcccCCCCCcCeEEEEECCCCceE--EeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcc
Q 010115 310 TKWYIAGGGSRKKRHAETLIFDILKGEWS--VAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIE 387 (518)
Q Consensus 310 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~--~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~ 387 (518)
+.+++.|+.++. +.+||+.+.+-. .+. . .-......+.+. ..+..++.|+.+ .+.+||+.
T Consensus 182 g~~lasg~~dg~-----i~iwd~~~~~~~~~~~~---~---~h~~~v~~l~fs--~~g~~l~s~~~~-----~v~iwd~~ 243 (343)
T 3lrv_A 182 SLLLALYSPDGI-----LDVYNLSSPDQASSRFP---V---DEEAKIKEVKFA--DNGYWMVVECDQ-----TVVCFDLR 243 (343)
T ss_dssp SCEEEEECTTSC-----EEEEESSCTTSCCEECC---C---CTTSCEEEEEEC--TTSSEEEEEESS-----BEEEEETT
T ss_pred CCEEEEEcCCCE-----EEEEECCCCCCCccEEe---c---cCCCCEEEEEEe--CCCCEEEEEeCC-----eEEEEEcC
Confidence 778888876544 899999887643 221 1 001222333443 233455666622 79999988
Q ss_pred cCC
Q 010115 388 KNE 390 (518)
Q Consensus 388 ~~~ 390 (518)
+.+
T Consensus 244 ~~~ 246 (343)
T 3lrv_A 244 KDV 246 (343)
T ss_dssp SST
T ss_pred CCC
Confidence 765
No 191
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=92.35 E-value=0.65 Score=44.42 Aligned_cols=159 Identities=16% Similarity=0.129 Sum_probs=79.9
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-C-CEEEEEcccCCCCcccCcEEEEEcCC
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-S-SVLILFGGEDGKRRKLNDLHMFDLKS 233 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~yd~~t 233 (518)
++++|+.++.. ..++++|+.+++....-. .+....-+.++.. + +.+|+.+.. ...+++||+.+
T Consensus 10 ~~~~~v~~~~~------~~v~~~d~~~~~~~~~~~---~~~~~~~~~~~~s~dg~~~~v~~~~------~~~i~~~d~~t 74 (349)
T 1jmx_B 10 GHEYMIVTNYP------NNLHVVDVASDTVYKSCV---MPDKFGPGTAMMAPDNRTAYVLNNH------YGDIYGIDLDT 74 (349)
T ss_dssp TCEEEEEEETT------TEEEEEETTTTEEEEEEE---CSSCCSSCEEEECTTSSEEEEEETT------TTEEEEEETTT
T ss_pred CCEEEEEeCCC------CeEEEEECCCCcEEEEEe---cCCCCCCceeEECCCCCEEEEEeCC------CCcEEEEeCCC
Confidence 67788877653 369999999987654433 2221112334433 3 467777532 24699999988
Q ss_pred CcEEEeecCCCCCC--CCCCcEEEEE-CCcEEEEEcCC---CCC---CCCCcEEEEEcCCCeEEEeecCCCCCCCCcceE
Q 010115 234 LTWLPLHCTGTGPS--PRSNHVAALY-DDKNLLIFGGS---SKS---KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCC 304 (518)
Q Consensus 234 ~~W~~~~~~g~~p~--~r~~~~~~~~-~~~~lyv~GG~---~~~---~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~ 304 (518)
.+-...-..+..+. ...-+.++.. +++.+|+.+.. ... ...+.++.||+++++-.+..... +.++...+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~ 152 (349)
T 1jmx_B 75 CKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF--PMPRQVYL 152 (349)
T ss_dssp TEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE--ECCSSCCC
T ss_pred CcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec--cCCCcccc
Confidence 77554321111110 1112233443 45545554411 000 01247999998763321110000 11222223
Q ss_pred EEEE-CCEEEEEcccCCCCCcCeEEEEECCCCceEE
Q 010115 305 GVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSV 339 (518)
Q Consensus 305 ~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 339 (518)
++.. ++++|+.++ +++++|+.+.+-..
T Consensus 153 ~~~s~dg~l~~~~~--------~i~~~d~~~~~~~~ 180 (349)
T 1jmx_B 153 MRAADDGSLYVAGP--------DIYKMDVKTGKYTV 180 (349)
T ss_dssp EEECTTSCEEEESS--------SEEEECTTTCCEEE
T ss_pred eeECCCCcEEEccC--------cEEEEeCCCCceec
Confidence 3332 566777432 38999998876544
No 192
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=92.28 E-value=10 Score=41.03 Aligned_cols=224 Identities=6% Similarity=-0.008 Sum_probs=110.5
Q ss_pred cEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCceeEEEEECCC------CcEE-
Q 010115 115 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTET------ECWS- 186 (518)
Q Consensus 115 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t------~~W~- 186 (518)
.+.+||+.+++++........ ...+...-++++.. ++.|++- .... -+++||+.+ ..+.
T Consensus 393 GL~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~i~~d~~g~lWig-T~~~------Gl~~~~~~~~~~~~~~~~~~ 459 (758)
T 3ott_A 393 SINRYDYATRQFIHYNIVDNT------GTYNTNWTYYIFEDTAGQLWIS-TCLG------GIFVVDKHKLMQSTSGQYIA 459 (758)
T ss_dssp EEEEEETTTTEEEEEEEECCC--------CBSSSEEEEEECTTSEEEEE-ESSS------CEEEEEHHHHHHCCSSEEEC
T ss_pred cHhhcCcCCCcEEEeecCCCc------CCCCCceEEEEEEcCCCCEEEE-ECCC------ceEEEccccccccCCcceec
Confidence 478889888888776431000 00111122344443 4677773 2211 277888653 2232
Q ss_pred --EeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEE
Q 010115 187 --VVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLL 263 (518)
Q Consensus 187 --~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~ly 263 (518)
.......++... -.++.. -++.||++||.. ..+.+||+++.+++.+... .++......++..-.+..|+
T Consensus 460 ~~~~~~~~~l~~~~-i~~i~~d~~g~lWi~~~t~------~Gl~~~d~~~~~~~~~~~~-~~~~~~~~~~i~~d~~g~lW 531 (758)
T 3ott_A 460 EQNYSVHNGLSGMF-INQIIPDNEGNVWVLLYNN------KGIDKINPRTREVTKLFAD-ELTGEKSPNYLLCDEDGLLW 531 (758)
T ss_dssp SEEECGGGTCSCSC-EEEEEECTTSCEEEEETTC------SSEEEEETTTTEEEEECTT-TSCGGGCEEEEEECTTSCEE
T ss_pred ccccccccccccce-eeeEEEcCCCCEEEEccCC------CCcEEEeCCCCceEEecCC-CcCCCcccceEEECCCCCEE
Confidence 111111122211 122222 247899876653 2389999999999887421 11111111223333333366
Q ss_pred EEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEeecC
Q 010115 264 IFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITS 343 (518)
Q Consensus 264 v~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 343 (518)
+.. . +-+.+||+++++++.....+ .|. ....+.+..++.|++... .-+.+||+.+.+......
T Consensus 532 igt-~------~Gl~~~~~~~~~~~~~~~~g-l~~-~~i~~i~~~~g~lWi~t~-------~Gl~~~~~~~~~~~~~~~- 594 (758)
T 3ott_A 532 VGF-H------GGVMRINPKDESQQSISFGS-FSN-NEILSMTCVKNSIWVSTT-------NGLWIIDRKTMDARQQNM- 594 (758)
T ss_dssp EEE-T------TEEEEECC--CCCCBCCCCC-----CCEEEEEEETTEEEEEES-------SCEEEEETTTCCEEEC---
T ss_pred EEe-c------CceEEEecCCCceEEecccC-CCc-cceEEEEECCCCEEEECC-------CCeEEEcCCCceeEEecC-
Confidence 532 2 24999999888776653221 222 223344445788888652 238999999988766431
Q ss_pred CCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccC
Q 010115 344 PSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (518)
Q Consensus 344 ~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~ 389 (518)
+ .... ...... ..++.| .|||.+ .+-.|+|+.-
T Consensus 595 ~----~~~~--~~~~~~-~~~G~l-~fG~~~-----Gl~~f~p~~~ 627 (758)
T 3ott_A 595 T----NKRF--TSLLFD-PKEDCV-YLGGAD-----GFGISHSNLE 627 (758)
T ss_dssp C----CCCC--SEEEEE-TTTTEE-EEECBS-----EEEEEEC---
T ss_pred C----CCce--eeeEEE-CCCCcE-EEecCC-----ceEEEChhhc
Confidence 1 1111 222222 123444 578765 5788888753
No 193
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=92.01 E-value=8.4 Score=36.45 Aligned_cols=146 Identities=10% Similarity=0.081 Sum_probs=72.4
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCceeEE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~ 176 (518)
++..++.|+.+ ..+.+||..+.+-...-. .....-.+++.. ++.+++.|+.+. .+.
T Consensus 76 dg~~l~s~s~D-----~~v~~wd~~~~~~~~~~~------------~h~~~v~~~~~~~~~~~l~s~s~D~------~i~ 132 (319)
T 3frx_A 76 DGAYALSASWD-----KTLRLWDVATGETYQRFV------------GHKSDVMSVDIDKKASMIISGSRDK------TIK 132 (319)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTTEEEEEEE------------CCSSCEEEEEECTTSCEEEEEETTS------CEE
T ss_pred CCCEEEEEeCC-----CEEEEEECCCCCeeEEEc------------cCCCcEEEEEEcCCCCEEEEEeCCC------eEE
Confidence 45566677654 468889988765322111 000011122222 466777777643 477
Q ss_pred EEECCCCcEEEeeecCCCCCCCcceEEEEE-------CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCC
Q 010115 177 TFDTETECWSVVEAKGDIPVARSGHTVVRA-------SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPR 249 (518)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r 249 (518)
.||.....-..+.. ....-.++... ++.+++.|+.+. .+..+|+.+.+-...- .. ...
T Consensus 133 vwd~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~------~i~~wd~~~~~~~~~~---~~-h~~ 197 (319)
T 3frx_A 133 VWTIKGQCLATLLG-----HNDWVSQVRVVPNEKADDDSVTIISAGNDK------MVKAWNLNQFQIEADF---IG-HNS 197 (319)
T ss_dssp EEETTSCEEEEECC-----CSSCEEEEEECCC------CCEEEEEETTS------CEEEEETTTTEEEEEE---CC-CCS
T ss_pred EEECCCCeEEEEec-----cCCcEEEEEEccCCCCCCCccEEEEEeCCC------EEEEEECCcchhheee---cC-CCC
Confidence 77877654333321 01111112221 233566666543 3788888776543321 11 111
Q ss_pred CCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCe
Q 010115 250 SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI 286 (518)
Q Consensus 250 ~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 286 (518)
.-.+++...+..+++.|+.++ .+..||+.+.+
T Consensus 198 ~v~~~~~sp~g~~l~s~~~dg-----~i~iwd~~~~~ 229 (319)
T 3frx_A 198 NINTLTASPDGTLIASAGKDG-----EIMLWNLAAKK 229 (319)
T ss_dssp CEEEEEECTTSSEEEEEETTC-----EEEEEETTTTE
T ss_pred cEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCc
Confidence 112333444433677777654 58899987764
No 194
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=91.97 E-value=9.2 Score=36.85 Aligned_cols=148 Identities=16% Similarity=0.111 Sum_probs=77.7
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE---CCEEEEEcccCCCCcccCcEEEEEcC
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA---SSVLILFGGEDGKRRKLNDLHMFDLK 232 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~ 232 (518)
++..++.|+.+. .+..||+.+.+-...-. ...... .++... ++.+++.|+.+. .+.+||+.
T Consensus 165 ~~~~l~t~s~D~------~v~lwd~~~~~~~~~~~---~h~~~v-~~~~~~~~~~g~~l~sgs~Dg------~v~~wd~~ 228 (354)
T 2pbi_B 165 SDMQILTASGDG------TCALWDVESGQLLQSFH---GHGADV-LCLDLAPSETGNTFVSGGCDK------KAMVWDMR 228 (354)
T ss_dssp SSSEEEEEETTS------EEEEEETTTCCEEEEEE---CCSSCE-EEEEECCCSSCCEEEEEETTS------CEEEEETT
T ss_pred CCCEEEEEeCCC------cEEEEeCCCCeEEEEEc---CCCCCe-EEEEEEeCCCCCEEEEEeCCC------eEEEEECC
Confidence 344455555432 58889998876443221 011111 112221 346777887654 38889998
Q ss_pred CCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE--CC
Q 010115 233 SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GT 310 (518)
Q Consensus 233 t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~--~~ 310 (518)
+.+....- ... ...-.+++...+..+++.|+.++ .+..||+.+..-..+-.. .........+.+ ++
T Consensus 229 ~~~~~~~~---~~h-~~~v~~v~~~p~~~~l~s~s~D~-----~v~lwd~~~~~~~~~~~~---~~~~~~~~~~~~s~~g 296 (354)
T 2pbi_B 229 SGQCVQAF---ETH-ESDVNSVRYYPSGDAFASGSDDA-----TCRLYDLRADREVAIYSK---ESIIFGASSVDFSLSG 296 (354)
T ss_dssp TCCEEEEE---CCC-SSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEECC---TTCCSCEEEEEECTTS
T ss_pred CCcEEEEe---cCC-CCCeEEEEEeCCCCEEEEEeCCC-----eEEEEECCCCcEEEEEcC---CCcccceeEEEEeCCC
Confidence 87754432 111 11112233333333677777654 488899877643332221 111222233333 57
Q ss_pred EEEEEcccCCCCCcCeEEEEECCCCc
Q 010115 311 KWYIAGGGSRKKRHAETLIFDILKGE 336 (518)
Q Consensus 311 ~iyv~GG~~~~~~~~~v~~yd~~~~~ 336 (518)
++++.|+.++ .+.+||+.+..
T Consensus 297 ~~l~~g~~d~-----~i~vwd~~~~~ 317 (354)
T 2pbi_B 297 RLLFAGYNDY-----TINVWDVLKGS 317 (354)
T ss_dssp SEEEEEETTS-----CEEEEETTTCS
T ss_pred CEEEEEECCC-----cEEEEECCCCc
Confidence 7777777554 38899987654
No 195
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=91.65 E-value=11 Score=37.13 Aligned_cols=233 Identities=12% Similarity=0.113 Sum_probs=108.5
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCCCceeEEE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWT 177 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 177 (518)
++.+++.|+.+ ..+.+||..+.+-..... ... ....++..++.+++.|+... .+..
T Consensus 158 dg~~lasgs~D-----g~v~iWd~~~~~~~~~~~------------~h~-~~v~~~s~~~~~l~sgs~d~------~i~~ 213 (420)
T 4gga_A 158 EGNYLAVGTSS-----AEVQLWDVQQQKRLRNMT------------SHS-ARVGSLSWNSYILSSGSRSG------HIHH 213 (420)
T ss_dssp TSSEEEEEETT-----SCEEEEETTTTEEEEEEC------------CCS-SCEEEEEEETTEEEEEETTS------EEEE
T ss_pred CCCEEEEEECC-----CeEEEEEcCCCcEEEEEe------------CCC-CceEEEeeCCCEEEEEeCCC------ceeE
Confidence 45677777755 458889988765332221 001 12234455677777777643 5777
Q ss_pred EECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCc--EEEeecCCCCCCCCCCcEEE
Q 010115 178 FDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSPRSNHVAA 255 (518)
Q Consensus 178 yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~ 255 (518)
+|..+.........+ ............++..++.|+.++ .+.++|..+.+ +..+.. .......-.+.+
T Consensus 214 ~d~~~~~~~~~~~~~--h~~~~~~~~~~~~g~~l~s~~~D~------~v~i~~~~~~~~~~~~~~~--~~~~~~~V~~~~ 283 (420)
T 4gga_A 214 HDVRVAEHHVATLSG--HSQEVCGLRWAPDGRHLASGGNDN------LVNVWPSAPGEGGWVPLQT--FTQHQGAVKAVA 283 (420)
T ss_dssp EETTSSSCEEEEEEC--CSSCEEEEEECTTSSEEEEEETTS------CEEEEESSCCSSCSCCSEE--ECCCSSCEEEEE
T ss_pred eeecccceeeEEecc--cccceeeeeecCCCCeeeeeeccc------cceEEeeccccccceeeee--ecccCCceeeee
Confidence 787765533222111 111111111122455666666543 36667765432 111110 000011111122
Q ss_pred EE--CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEcccCCCCCcCeEEEEE
Q 010115 256 LY--DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFD 331 (518)
Q Consensus 256 ~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd 331 (518)
.. +...+.+.||... ..|..||+.+..-...... . ....+.+.. ++.+++..|... +.+.+||
T Consensus 284 ~~p~~~~~la~~~gs~D----~~I~iwd~~t~~~~~~~~~---~--~~v~~~~~~~~~~~lv~~sg~~d----~~I~iwd 350 (420)
T 4gga_A 284 WCPWQSNVLATGGGTSD----RHIRIWNVCSGACLSAVDA---H--SQVCSILWSPHYKELISGHGFAQ----NQLVIWK 350 (420)
T ss_dssp ECTTCTTEEEEEECTTT----CEEEEEETTTTEEEEEEEC---S--SCEEEEEEETTTTEEEEEECTTT----CCEEEEE
T ss_pred eCCCcccEEEEEeecCC----CEEEEEeCCccccceeecc---c--cceeeeeecCCCCeEEEEEecCC----CEEEEEE
Confidence 22 3443344444322 2588899988764443322 1 112222222 455665555433 3488999
Q ss_pred CCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccC
Q 010115 332 ILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (518)
Q Consensus 332 ~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~ 389 (518)
..+.+- +...... ......+.+.. ++.+++.||.++ .|-++|+...
T Consensus 351 ~~~~~~--v~~l~gH----~~~V~~l~~sp--dg~~l~S~s~D~----tvriWdv~~~ 396 (420)
T 4gga_A 351 YPTMAK--VAELKGH----TSRVLSLTMSP--DGATVASAAADE----TLRLWRCFEL 396 (420)
T ss_dssp TTTCCE--EEEECCC----SSCEEEEEECT--TSSCEEEEETTT----EEEEECCSCS
T ss_pred CCCCcE--EEEEcCC----CCCEEEEEEcC--CCCEEEEEecCC----eEEEEECCCC
Confidence 876543 2221111 01122333332 233566777654 5777776543
No 196
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=91.48 E-value=14 Score=37.92 Aligned_cols=182 Identities=8% Similarity=0.028 Sum_probs=87.3
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCC
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~ 234 (518)
+++.++.|+... .+..||.....-..+.. ..... .+++. -+++.++.|+.+. .+.+||....
T Consensus 355 ~g~~l~~~~~dg------~v~~~~~~~~~~~~~~~----~~~~v-~~~~~s~dg~~l~~~~~d~------~v~~~~~~~~ 417 (577)
T 2ymu_A 355 DGQTIASASDDK------TVKLWNRNGQLLQTLTG----HSSSV-RGVAFSPDGQTIASASDDK------TVKLWNRNGQ 417 (577)
T ss_dssp TSSEEEEEETTS------EEEEEETTCCEEEEEEC----CSSCE-EEEEECTTSSCEEEEETTS------EEEEECTTCC
T ss_pred CCCEEEEEeCCC------EEEEEcCCCCEEEEecC----CCCCe-EEEEECCCCCEEEEEeCCC------EEEEEeCCCC
Confidence 456666666532 46777865554444332 11111 12222 2456666666543 3677776544
Q ss_pred cEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCEEE
Q 010115 235 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWY 313 (518)
Q Consensus 235 ~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~iy 313 (518)
.-..+. . .... -.+++...+..+++.++.++ .+..||.....-..+... . ..-.+++.. +++++
T Consensus 418 ~~~~~~---~-~~~~-v~~~~~s~d~~~l~~~~~d~-----~v~~w~~~~~~~~~~~~~----~-~~v~~~~~spd~~~l 482 (577)
T 2ymu_A 418 LLQTLT---G-HSSS-VWGVAFSPDDQTIASASDDK-----TVKLWNRNGQLLQTLTGH----S-SSVRGVAFSPDGQTI 482 (577)
T ss_dssp EEEEEE---C-CSSC-EEEEEECTTSSEEEEEETTS-----EEEEEETTSCEEEEEECC----S-SCEEEEEECTTSCEE
T ss_pred EEEEec---C-CCCC-eEEEEECCCCCEEEEEcCCC-----EEEEEECCCCEEEEEcCC----C-CCEEEEEEcCCCCEE
Confidence 333332 1 1111 11233333332666665543 478888766554444322 1 111222222 67777
Q ss_pred EEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcc
Q 010115 314 IAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIE 387 (518)
Q Consensus 314 v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~ 387 (518)
+.|+.+. .+.++|.....-..+... ......+.+.. ++.+++.|+.++ .|.+||..
T Consensus 483 as~~~d~-----~i~iw~~~~~~~~~~~~h-------~~~v~~l~~s~--dg~~l~s~~~dg----~v~lwd~~ 538 (577)
T 2ymu_A 483 ASASDDK-----TVKLWNRNGQLLQTLTGH-------SSSVRGVAFSP--DGQTIASASDDK----TVKLWNRN 538 (577)
T ss_dssp EEEETTS-----EEEEEETTSCEEEEEECC-------SSCEEEEEECT--TSSCEEEEETTS----EEEEECTT
T ss_pred EEEeCCC-----EEEEEcCCCCEEEEEeCC-------CCCEEEEEEcC--CCCEEEEEECcC----EEEEEeCC
Confidence 7777543 378888655443333211 01123333432 233566676543 57777743
No 197
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=91.48 E-value=3.1 Score=39.60 Aligned_cols=194 Identities=10% Similarity=0.076 Sum_probs=95.1
Q ss_pred CEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEEC----CEEEEEcccCCCCcccCcEEEEEcC
Q 010115 157 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRAS----SVLILFGGEDGKRRKLNDLHMFDLK 232 (518)
Q Consensus 157 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~----~~iyv~GG~~~~~~~~~~~~~yd~~ 232 (518)
..+++.|+... ....+..||..+.+...... ......-.++.... +.+++.|+.++ .+.+||+.
T Consensus 31 ~~l~~~~s~~~---~d~~v~iw~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~l~~~~~dg------~i~iwd~~ 98 (357)
T 3i2n_A 31 AKFVTMGNFAR---GTGVIQLYEIQHGDLKLLRE---IEKAKPIKCGTFGATSLQQRYLATGDFGG------NLHIWNLE 98 (357)
T ss_dssp SEEEEEEC--C---CCEEEEEEEECSSSEEEEEE---EEESSCEEEEECTTCCTTTCCEEEEETTS------CEEEECTT
T ss_pred ceEEEecCccC---CCcEEEEEeCCCCcccceee---ecccCcEEEEEEcCCCCCCceEEEecCCC------eEEEEeCC
Confidence 36666766421 12368888988887654432 11111112233322 36777776553 37788887
Q ss_pred CCc--EEEeecCCCCCCCCCCcEEEE-------ECCcEEEEEcCCCCCCCCCcEEEEEcCCCe--EEEeecCCCCCCCCc
Q 010115 233 SLT--WLPLHCTGTGPSPRSNHVAAL-------YDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRA 301 (518)
Q Consensus 233 t~~--W~~~~~~g~~p~~r~~~~~~~-------~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~v~~~~~~p~~r~ 301 (518)
+.+ -..+. . . ...-.++.. -++. +++.|+.++ .+..||+.+.. ...+..... ...+.
T Consensus 99 ~~~~~~~~~~---~-~-~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~-----~i~vwd~~~~~~~~~~~~~~~~-~~~~~ 166 (357)
T 3i2n_A 99 APEMPVYSVK---G-H-KEIINAIDGIGGLGIGEGAP-EIVTGSRDG-----TVKVWDPRQKDDPVANMEPVQG-ENKRD 166 (357)
T ss_dssp SCSSCSEEEC---C-C-SSCEEEEEEESGGGCC-CCC-EEEEEETTS-----CEEEECTTSCSSCSEEECCCTT-SCCCC
T ss_pred CCCccEEEEE---e-c-ccceEEEeeccccccCCCcc-EEEEEeCCC-----eEEEEeCCCCCCcceeccccCC-CCCCc
Confidence 654 22221 0 0 011111111 1344 566666544 48889987654 333332110 11112
Q ss_pred ceEEEE-----ECCEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCC-ccEEEEEcCCCC
Q 010115 302 GCCGVL-----CGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKE-KDFLVAFGGIKK 375 (518)
Q Consensus 302 ~~~~~~-----~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~-~~~l~v~GG~~~ 375 (518)
..+.+. -++.+++.|+.++ .+.+||+.+..-...... ......+.+...+ .+..++.|+.++
T Consensus 167 v~~~~~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~l~~~~~dg 234 (357)
T 3i2n_A 167 CWTVAFGNAYNQEERVVCAGYDNG-----DIKLFDLRNMALRWETNI-------KNGVCSLEFDRKDISMNKLVATSLEG 234 (357)
T ss_dssp EEEEEEECCCC-CCCEEEEEETTS-----EEEEEETTTTEEEEEEEC-------SSCEEEEEESCSSSSCCEEEEEESTT
T ss_pred eEEEEEEeccCCCCCEEEEEccCC-----eEEEEECccCceeeecCC-------CCceEEEEcCCCCCCCCEEEEECCCC
Confidence 222221 3667777776543 489999988765433211 1123333443210 233556666543
Q ss_pred CCCCcEEEEEcccCC
Q 010115 376 EPSNQVEVLSIEKNE 390 (518)
Q Consensus 376 ~~~~~v~~yd~~~~~ 390 (518)
.+.+||+.+.+
T Consensus 235 ----~i~i~d~~~~~ 245 (357)
T 3i2n_A 235 ----KFHVFDMRTQH 245 (357)
T ss_dssp ----EEEEEEEEEEE
T ss_pred ----eEEEEeCcCCC
Confidence 68888887654
No 198
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=91.30 E-value=9.4 Score=35.60 Aligned_cols=188 Identities=9% Similarity=0.026 Sum_probs=96.4
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCC--cEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCCCceeE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSV 175 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v 175 (518)
.+++++.|..+ +.++++|..+. .|+.-... .....+..+.-++++|+.+. +.+
T Consensus 4 ~~~~lv~~~~~-----~~v~~~d~~tG~~~w~~~~~~------------~~~~~~~~~~pdG~ilvs~~--------~~V 58 (276)
T 3no2_A 4 PQHLLVGGSGW-----NKIAIINKDTKEIVWEYPLEK------------GWECNSVAATKAGEILFSYS--------KGA 58 (276)
T ss_dssp CCEEEEECTTC-----SEEEEEETTTTEEEEEEECCT------------TCCCCEEEECTTSCEEEECB--------SEE
T ss_pred CCcEEEeeCCC-----CEEEEEECCCCeEEEEeCCCc------------cCCCcCeEECCCCCEEEeCC--------CCE
Confidence 35677776543 56889998665 57654321 01122333334778887321 258
Q ss_pred EEEECCCCc--EEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCCc-EEEeecCCCC--CCCC
Q 010115 176 WTFDTETEC--WSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLT-WLPLHCTGTG--PSPR 249 (518)
Q Consensus 176 ~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~g~~--p~~r 249 (518)
+.||+ +++ |+.-. +....-+++.. .++.+++....+ ...++.+|++... |+.... +.. +...
T Consensus 59 ~~~d~-~G~~~W~~~~-----~~~~~~~~~~~~~dG~~lv~~~~~-----~~~v~~vd~~Gk~l~~~~~~-~~~~~~~~~ 126 (276)
T 3no2_A 59 KMITR-DGRELWNIAA-----PAGCEMQTARILPDGNALVAWCGH-----PSTILEVNMKGEVLSKTEFE-TGIERPHAQ 126 (276)
T ss_dssp EEECT-TSCEEEEEEC-----CTTCEEEEEEECTTSCEEEEEEST-----TEEEEEECTTSCEEEEEEEC-CSCSSGGGS
T ss_pred EEECC-CCCEEEEEcC-----CCCccccccEECCCCCEEEEecCC-----CCEEEEEeCCCCEEEEEecc-CCCCccccc
Confidence 99999 443 76543 21112233333 355666553321 1357778875442 443211 111 1111
Q ss_pred CCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC-eEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCCCcCeE
Q 010115 250 SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM-IWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAET 327 (518)
Q Consensus 250 ~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~-~W~~v~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v 327 (518)
........++. +++.... .+.+..||++.+ .|+.-.. . . .+++... ++.++|.+... ..+
T Consensus 127 ~~~v~~~~~G~-~lv~~~~-----~~~v~~~d~~G~~~w~~~~~--~--~---~~~~~~~~~g~~~v~~~~~-----~~v 188 (276)
T 3no2_A 127 FRQINKNKKGN-YLVPLFA-----TSEVREIAPNGQLLNSVKLS--G--T---PFSSAFLDNGDCLVACGDA-----HCF 188 (276)
T ss_dssp CSCCEECTTSC-EEEEETT-----TTEEEEECTTSCEEEEEECS--S--C---CCEEEECTTSCEEEECBTT-----SEE
T ss_pred ccCceECCCCC-EEEEecC-----CCEEEEECCCCCEEEEEECC--C--C---ccceeEcCCCCEEEEeCCC-----CeE
Confidence 22223334555 5554432 246999998733 3554321 1 1 1233444 67888877543 359
Q ss_pred EEEECCCC--ceEEe
Q 010115 328 LIFDILKG--EWSVA 340 (518)
Q Consensus 328 ~~yd~~~~--~W~~~ 340 (518)
+.+|++++ .|+.-
T Consensus 189 ~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 189 VQLNLESNRIVRRVN 203 (276)
T ss_dssp EEECTTTCCEEEEEE
T ss_pred EEEeCcCCcEEEEec
Confidence 99999954 46653
No 199
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=91.25 E-value=12 Score=36.75 Aligned_cols=234 Identities=14% Similarity=0.130 Sum_probs=117.4
Q ss_pred CCeEEeccCCCCCCCccceEEEEE---CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCc---
Q 010115 74 ENWMVLSIAGDKPIPRFNHAAAVI---GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPAC--- 147 (518)
Q Consensus 74 ~~W~~l~~~~~~p~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r--- 147 (518)
.+|+.+.. .+....-++++.. .+.||+.+.... .-..+++.+-...+|+.+...... + ..+.+
T Consensus 43 ~~W~~~~~---~~~~~~v~~i~~dp~~~~~l~~g~~~g~--~g~gl~~s~D~G~tW~~~~~~~~~-~-----~~~~~~~~ 111 (394)
T 3b7f_A 43 RTWELRGP---VFLGHTIHHIVQDPREPERMLMAARTGH--LGPTVFRSDDGGGNWTEATRPPAF-N-----KAPEGETG 111 (394)
T ss_dssp CSEEEEEE---ESTTSEEEEEEECSSSTTCEEEEEEC----CCEEEEEESSTTSCCEECSBCCCC-C-----CCC----C
T ss_pred CCceECCc---cCCCCceEEEEECCCCCCeEEEEecCCC--CCccEEEeCCCCCCceECCccccC-C-----Cccccccc
Confidence 68988741 1222223444444 456887653211 112467766667899998642100 0 00111
Q ss_pred ----cceEEEEE----CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCC--------------CCcceEEEE
Q 010115 148 ----RGHSLISW----GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPV--------------ARSGHTVVR 205 (518)
Q Consensus 148 ----~~~~~~~~----~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~--------------~r~~~~~~~ 205 (518)
.-.+++.. .+.||+.+-. .-+++.+-...+|+.+......|. ...-+++++
T Consensus 112 ~~~~~i~~l~~~~~~~~~~l~~g~~~-------ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~ 184 (394)
T 3b7f_A 112 RVVDHVFWLTPGHASEPGTWYAGTSP-------QGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILV 184 (394)
T ss_dssp CCCCEEEEEEECCTTSTTCEEEEEET-------TEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEE
T ss_pred ccccceeEEEeCCCCCCCEEEEEecC-------CcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEE
Confidence 11233443 4677765421 248888888889998753111121 112234444
Q ss_pred E---CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecC---CCCCCC-----CCCcEEEEECC--cEEEEEcCCCCCC
Q 010115 206 A---SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT---GTGPSP-----RSNHVAALYDD--KNLLIFGGSSKSK 272 (518)
Q Consensus 206 ~---~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~---g~~p~~-----r~~~~~~~~~~--~~lyv~GG~~~~~ 272 (518)
. .+.||+.... ..+++.+-...+|+.+... ..+|.+ ...+.++.... ..||+...
T Consensus 185 d~~~~~~l~vg~~~-------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~----- 252 (394)
T 3b7f_A 185 DPRDPKHLYIGMSS-------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH----- 252 (394)
T ss_dssp CTTCTTCEEEEEET-------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET-----
T ss_pred CCCCCCEEEEEECC-------CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC-----
Confidence 3 3567775321 2377777677899988521 012221 22344444432 54666421
Q ss_pred CCCcEEEEEcCCCeEEEeecCCCCCCC--CcceEEEEE---CCEEEEEcccCCC-------CCcCeEEEEECCCCceEEe
Q 010115 273 TLNDLYSLDFETMIWTRIKIRGFHPSP--RAGCCGVLC---GTKWYIAGGGSRK-------KRHAETLIFDILKGEWSVA 340 (518)
Q Consensus 273 ~~~~v~~yd~~~~~W~~v~~~~~~p~~--r~~~~~~~~---~~~iyv~GG~~~~-------~~~~~v~~yd~~~~~W~~~ 340 (518)
..|++.+-...+|+.+... .|.. ....+.++. .+.||+....... .....+++-.-...+|+.+
T Consensus 253 --~gl~~s~D~G~tW~~~~~~--l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~ 328 (394)
T 3b7f_A 253 --CGIYRMDRREGVWKRIGDA--MPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQ 328 (394)
T ss_dssp --TEEEEEETTTTEEECGGGG--SCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEE
T ss_pred --CeEEEeCCCCCcceECCCC--CCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceEC
Confidence 3489999889999998641 1221 233333332 4678876311110 1112344443344799997
Q ss_pred e
Q 010115 341 I 341 (518)
Q Consensus 341 ~ 341 (518)
.
T Consensus 329 ~ 329 (394)
T 3b7f_A 329 D 329 (394)
T ss_dssp C
T ss_pred C
Confidence 5
No 200
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=91.19 E-value=10 Score=39.02 Aligned_cols=148 Identities=7% Similarity=0.025 Sum_probs=72.7
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCC
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~ 234 (518)
+++.++.|+.+. .+..||.....-..+.. ..... .+++. -++++++.|+.+. .+.+||....
T Consensus 396 dg~~l~~~~~d~------~v~~~~~~~~~~~~~~~----~~~~v-~~~~~s~d~~~l~~~~~d~------~v~~w~~~~~ 458 (577)
T 2ymu_A 396 DGQTIASASDDK------TVKLWNRNGQLLQTLTG----HSSSV-WGVAFSPDDQTIASASDDK------TVKLWNRNGQ 458 (577)
T ss_dssp TSSCEEEEETTS------EEEEECTTCCEEEEEEC----CSSCE-EEEEECTTSSEEEEEETTS------EEEEEETTSC
T ss_pred CCCEEEEEeCCC------EEEEEeCCCCEEEEecC----CCCCe-EEEEECCCCCEEEEEcCCC------EEEEEECCCC
Confidence 456666666532 57777755443333321 11111 12222 2456666666543 3777887655
Q ss_pred cEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCEEE
Q 010115 235 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWY 313 (518)
Q Consensus 235 ~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~iy 313 (518)
.-..+.. ....-.+++...+..+++.|+.++ .+..||.....-..+... ... -.+++.. +++++
T Consensus 459 ~~~~~~~-----~~~~v~~~~~spd~~~las~~~d~-----~i~iw~~~~~~~~~~~~h----~~~-v~~l~~s~dg~~l 523 (577)
T 2ymu_A 459 LLQTLTG-----HSSSVRGVAFSPDGQTIASASDDK-----TVKLWNRNGQLLQTLTGH----SSS-VRGVAFSPDGQTI 523 (577)
T ss_dssp EEEEEEC-----CSSCEEEEEECTTSCEEEEEETTS-----EEEEEETTSCEEEEEECC----SSC-EEEEEECTTSSCE
T ss_pred EEEEEcC-----CCCCEEEEEEcCCCCEEEEEeCCC-----EEEEEcCCCCEEEEEeCC----CCC-EEEEEEcCCCCEE
Confidence 4444431 111122334444443667766543 478888655443333321 111 1122222 66777
Q ss_pred EEcccCCCCCcCeEEEEECCCCceEEe
Q 010115 314 IAGGGSRKKRHAETLIFDILKGEWSVA 340 (518)
Q Consensus 314 v~GG~~~~~~~~~v~~yd~~~~~W~~~ 340 (518)
+.|+.++ .+.+||........+
T Consensus 524 ~s~~~dg-----~v~lwd~~~~~~~~~ 545 (577)
T 2ymu_A 524 ASASDDK-----TVKLWNRNGQLLQTL 545 (577)
T ss_dssp EEEETTS-----EEEEECTTSCEEEEE
T ss_pred EEEECcC-----EEEEEeCCCCEEEEE
Confidence 7777543 378888765544443
No 201
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=90.62 E-value=11 Score=35.13 Aligned_cols=28 Identities=11% Similarity=0.133 Sum_probs=18.6
Q ss_pred CCEEEEEcccCCCCCcCeEEEEECCC-CceEEee
Q 010115 309 GTKWYIAGGGSRKKRHAETLIFDILK-GEWSVAI 341 (518)
Q Consensus 309 ~~~iyv~GG~~~~~~~~~v~~yd~~~-~~W~~~~ 341 (518)
++++++.||.++. +.+||+.+ ..|..+.
T Consensus 317 ~~~~l~s~~~dg~-----v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 317 TGTILSSAGDDGK-----VRLWKATYSNEFKCMS 345 (351)
T ss_dssp SSCCEEEEETTSC-----EEEEEECTTSCEEEEE
T ss_pred CCCEEEEecCCCc-----EEEEecCcCcchhhee
Confidence 5667777776543 77888765 4676655
No 202
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=90.59 E-value=12 Score=35.59 Aligned_cols=238 Identities=11% Similarity=0.039 Sum_probs=121.3
Q ss_pred CcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCceeEEEEECCCC--cEEEeee
Q 010115 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETE--CWSVVEA 190 (518)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~ 190 (518)
+.++++|+.+.+....... .....-+.+++. ++.||+..... ..|.+||+... .-..+..
T Consensus 69 ~~i~~~d~~~g~~~~~~~~-----------~~~~~p~gia~d~~g~l~v~d~~~------~~v~~~~~~g~~~~~~~~~~ 131 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGK-----------NLFYLPHGLSIDTDGNYWVTDVAL------HQVFKLDPHSKEGPLLILGR 131 (329)
T ss_dssp CCEEEECTTTCCEEEEECT-----------TTCSSEEEEEECTTSCEEEEETTT------TEEEEECTTCSSCCSEEESB
T ss_pred CcEEEEECCCCeEEeccCC-----------CccCCceEEEECCCCCEEEEECCC------CEEEEEeCCCCeEEEEEecc
Confidence 4689999987665432210 001112344443 56799876532 36899998765 2222221
Q ss_pred cC---CCCCCC-cceEEEEE--CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCC----CCCCC-CcEEEEECC
Q 010115 191 KG---DIPVAR-SGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTG----PSPRS-NHVAALYDD 259 (518)
Q Consensus 191 ~~---~~p~~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~----p~~r~-~~~~~~~~~ 259 (518)
.+ .-.... .-..+++. ++.||+..+.. .+.+.+||.....-..+...+.. +.... -+.+++..+
T Consensus 132 ~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~-----~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~ 206 (329)
T 3fvz_A 132 SMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC-----NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH 206 (329)
T ss_dssp TTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS-----CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETT
T ss_pred cCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC-----CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC
Confidence 00 001111 12234443 57999987521 24588999655444444321211 11111 123444443
Q ss_pred -cEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCC--CCCcCeEEEEECCCCc
Q 010115 260 -KNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSR--KKRHAETLIFDILKGE 336 (518)
Q Consensus 260 -~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~v~~yd~~~~~ 336 (518)
+.|||....+ +.|.+||+++.+....-... .....-.+.+...+.+|+..|... ......+.++|+.+.+
T Consensus 207 ~g~l~v~d~~~-----~~I~~~~~~~G~~~~~~~~~--~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~ 279 (329)
T 3fvz_A 207 LDQLCVADREN-----GRIQCFKTDTKEFVREIKHA--SFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGE 279 (329)
T ss_dssp TTEEEEEETTT-----TEEEEEETTTCCEEEEECCT--TTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCC
T ss_pred CCEEEEEECCC-----CEEEEEECCCCcEEEEEecc--ccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCe
Confidence 5588886432 46999999866654433221 111222233334577777766432 2233568999988877
Q ss_pred eEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccC
Q 010115 337 WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (518)
Q Consensus 337 W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~ 389 (518)
....-.. . ......-..+++. .++.|||....+ +.|.+|+++..
T Consensus 280 ~~~~~~~--~-~~~~~~p~~ia~~--~dG~lyvad~~~----~~I~~~~~~~~ 323 (329)
T 3fvz_A 280 IIDVFKP--V-RKHFDMPHDIVAS--EDGTVYIGDAHT----NTVWKFTLTEK 323 (329)
T ss_dssp EEEEECC--S-SSCCSSEEEEEEC--TTSEEEEEESSS----CCEEEEEEEEC
T ss_pred EEEEEcC--C-CCccCCeeEEEEC--CCCCEEEEECCC----CEEEEEeCCcc
Confidence 6554211 1 0111112333443 234788876543 37999998764
No 203
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=90.56 E-value=8.2 Score=34.19 Aligned_cols=153 Identities=13% Similarity=0.137 Sum_probs=83.3
Q ss_pred eEEEEECCEEEEEcCcCCCCCCceeEEEEECCCC--cEEEeeec---CCCCCCCcceEEEEE--CCEEEEEcccCCCCcc
Q 010115 150 HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETE--CWSVVEAK---GDIPVARSGHTVVRA--SSVLILFGGEDGKRRK 222 (518)
Q Consensus 150 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~---~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~ 222 (518)
-+++..++++|+|=|. .+|+++.... ........ ..+|.. .. ++... ++++|+|-|
T Consensus 10 DAi~~~~g~~yfFkg~--------~~Wr~~~~~~~~~~~p~~Is~~w~glP~~-ID-Aa~~~~~~~~~yfFkG------- 72 (195)
T 1itv_A 10 DAIAEIGNQLYLFKDG--------KYWRFSEGRGSRPQGPFLIADKWPALPRK-LD-SVFEEPLSKKLFFFSG------- 72 (195)
T ss_dssp SEEEEETTEEEEEETT--------EEEEECCSSSCCCEEEEEHHHHCTTSCSS-CS-EEEECTTTCCEEEEET-------
T ss_pred CEEEEeCCEEEEEECC--------EEEEEECCccccCCCcEEhhhccCCCCCC-cc-EEEEECCCCeEEEEeC-------
Confidence 3456679999999764 5899987652 33222111 135532 22 22222 678999966
Q ss_pred cCcEEEEEcCCCcE-EEeecCCCCCC--CCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEE-----Eee-cC
Q 010115 223 LNDLHMFDLKSLTW-LPLHCTGTGPS--PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWT-----RIK-IR 293 (518)
Q Consensus 223 ~~~~~~yd~~t~~W-~~~~~~g~~p~--~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~-----~v~-~~ 293 (518)
+..|+|+..+..- ..+... -+|. .....+.. ..+..+|+|-| +..|+||..+++=. .+. .-
T Consensus 73 -~~yw~~~~~~~~~Pk~i~~~-G~p~~~~~iDAA~~-~~~g~~yfFkg-------~~ywr~d~~~~~~~~gyPr~i~~~w 142 (195)
T 1itv_A 73 -RQVWVYTGASVLGPRRLDKL-GLGADVAQVTGALR-SGRGKMLLFSG-------RRLWRFDVKAQMVDPRSASEVDRMF 142 (195)
T ss_dssp -TEEEEEETTEEEEEEEGGGG-TCCTTCCCCCEEEE-CSTTEEEEEET-------TEEEEEETTTTEECGGGCEEHHHHS
T ss_pred -CEEEEEcCCccCCCEEeeec-ccCCCccceeEEEE-cCCCeEEEEeC-------CEEEEEeCCcccccCCCccChhhcC
Confidence 3477887542111 112111 1332 13333333 33445898866 36899998765311 111 00
Q ss_pred CCCCCCCcceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceE
Q 010115 294 GFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWS 338 (518)
Q Consensus 294 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 338 (518)
+ ..|..-.++...++.+|++-| +..|+||..+.+-.
T Consensus 143 ~--Gvp~~idaa~~~~g~~Yffkg-------~~y~~~~~~~~~v~ 178 (195)
T 1itv_A 143 P--GVPLDTHDVFQFREKAYFCQD-------RFYWRVSSRSELNQ 178 (195)
T ss_dssp T--TSCSSCSEEEEETTEEEEEET-------TEEEEEECCTTCCE
T ss_pred C--CCCCCCCEEEEeCCeEEEEeC-------CEEEEEECCccEEe
Confidence 0 112223455566899999987 45889998776543
No 204
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=90.54 E-value=4 Score=38.73 Aligned_cols=195 Identities=11% Similarity=0.133 Sum_probs=92.1
Q ss_pred CEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-C--CEEEEEcCcCCCCCCceeE
Q 010115 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-G--KKVLLVGGKTDSGSDRVSV 175 (518)
Q Consensus 99 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~v 175 (518)
+.+++.|+.+ ..+.++|+.+..|...... ......-.+++.. + +.+++.|+.+. .+
T Consensus 71 ~~~l~s~s~D-----~~v~iWd~~~~~~~~~~~~----------~~h~~~V~~v~~~p~~~g~~lasgs~D~------~i 129 (316)
T 3bg1_A 71 GNILASCSYD-----RKVIIWREENGTWEKSHEH----------AGHDSSVNSVCWAPHDYGLILACGSSDG------AI 129 (316)
T ss_dssp SSCEEEEETT-----SCEEEECCSSSCCCEEEEE----------CCCSSCCCEEEECCTTTCSCEEEECSSS------CE
T ss_pred CCEEEEEECC-----CEEEEEECCCCcceEEEEc----------cCCCCceEEEEECCCCCCcEEEEEcCCC------CE
Confidence 4566777655 3588889887766544321 0001011122222 2 45677776643 46
Q ss_pred EEEECCCC-cEEEeeecCCCCCCCcc-eEEEEE------------------CCEEEEEcccCCCCcccCcEEEEEcCC-C
Q 010115 176 WTFDTETE-CWSVVEAKGDIPVARSG-HTVVRA------------------SSVLILFGGEDGKRRKLNDLHMFDLKS-L 234 (518)
Q Consensus 176 ~~yd~~t~-~W~~~~~~~~~p~~r~~-~~~~~~------------------~~~iyv~GG~~~~~~~~~~~~~yd~~t-~ 234 (518)
..+|..+. .|..... ....... .++... .+.+++.||.+.. +.++|..+ .
T Consensus 130 ~lwd~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~------v~lWd~~~~~ 200 (316)
T 3bg1_A 130 SLLTYTGEGQWEVKKI---NNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNL------IKLWKEEEDG 200 (316)
T ss_dssp EEEEECSSSCEEECCB---TTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSB------CCEEEECTTS
T ss_pred EEEecCCCCCcceeee---eccccCCcceEEEccccCCccccccccccCccccceEEEecCCCe------EEEEEeCCCC
Confidence 66776665 4654332 1100000 001110 0245666665532 55666653 4
Q ss_pred cEEEeecCCCCCCCCCC-cEEEEECC-----cEEEEEcCCCCCCCCCcEEEEEcCC---CeEEE--eecCCCCCCCCcce
Q 010115 235 TWLPLHCTGTGPSPRSN-HVAALYDD-----KNLLIFGGSSKSKTLNDLYSLDFET---MIWTR--IKIRGFHPSPRAGC 303 (518)
Q Consensus 235 ~W~~~~~~g~~p~~r~~-~~~~~~~~-----~~lyv~GG~~~~~~~~~v~~yd~~~---~~W~~--v~~~~~~p~~r~~~ 303 (518)
.|..+. .+..-... .+++...+ . +++.|+.++ .+..+|+.+ ..|.. +... ...-.
T Consensus 201 ~~~~~~---~l~~h~~~V~~v~~sp~~~~~~~-~las~s~D~-----~v~iw~~~~~~~~~~~~~~~~~~-----~~~v~ 266 (316)
T 3bg1_A 201 QWKEEQ---KLEAHSDWVRDVAWAPSIGLPTS-TIASCSQDG-----RVFIWTCDDASSNTWSPKLLHKF-----NDVVW 266 (316)
T ss_dssp CEEEEE---CCBCCSSCEEEEECCCCSSCSCC-EEEEEETTC-----EEEEEECSSTTCCCCBCCEEEEC-----SSCEE
T ss_pred ccceee---ecccCCCceEEEEecCCCCCCCc-eEEEEcCCC-----eEEEEEccCccccchhhhhhhcC-----CCcEE
Confidence 576654 22211111 12222222 4 667776654 477787765 23321 1111 11111
Q ss_pred EEEEE-CCEEEEEcccCCCCCcCeEEEEECC-CCceEEeec
Q 010115 304 CGVLC-GTKWYIAGGGSRKKRHAETLIFDIL-KGEWSVAIT 342 (518)
Q Consensus 304 ~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~-~~~W~~~~~ 342 (518)
+++.. ++++++.||.++. +.+++.. .+.|..+..
T Consensus 267 ~v~~sp~g~~las~~~D~~-----v~lw~~~~~g~~~~~~~ 302 (316)
T 3bg1_A 267 HVSWSITANILAVSGGDNK-----VTLWKESVDGQWVCISD 302 (316)
T ss_dssp EEEECTTTCCEEEEESSSC-----EEEEEECTTSCEEEEEE
T ss_pred EEEEcCCCCEEEEEcCCCe-----EEEEEECCCCcEEEeee
Confidence 22222 5677788876544 6677754 567887764
No 205
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=90.23 E-value=12 Score=35.18 Aligned_cols=188 Identities=13% Similarity=0.040 Sum_probs=90.7
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCc----EEEeeecCCCCCCCcceEEEE-ECCE-EEEEcccCCCCcccCcEEEE
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETEC----WSVVEAKGDIPVARSGHTVVR-ASSV-LILFGGEDGKRRKLNDLHMF 229 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~----W~~~~~~~~~p~~r~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~~y 229 (518)
++.+++.|+.+. .+..||..+.. ...... . ...-.+++. -++. +++.|+.++ .+.+|
T Consensus 22 ~~~~l~~~~~d~------~v~iw~~~~~~~~~~~~~~~~---~--~~~v~~~~~~~~~~~~l~~~~~dg------~i~~w 84 (342)
T 1yfq_A 22 SKSLLLITSWDG------SLTVYKFDIQAKNVDLLQSLR---Y--KHPLLCCNFIDNTDLQIYVGTVQG------EILKV 84 (342)
T ss_dssp GGTEEEEEETTS------EEEEEEEETTTTEEEEEEEEE---C--SSCEEEEEEEESSSEEEEEEETTS------CEEEE
T ss_pred CCCEEEEEcCCC------eEEEEEeCCCCccccceeeee---c--CCceEEEEECCCCCcEEEEEcCCC------eEEEE
Confidence 455556666432 56777766655 332221 1 111222333 3566 677777543 48899
Q ss_pred Ec-CCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCe-------EEEeecCCCCCCCCc
Q 010115 230 DL-KSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI-------WTRIKIRGFHPSPRA 301 (518)
Q Consensus 230 d~-~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~-------W~~v~~~~~~p~~r~ 301 (518)
|+ .+.+...+. ..+....-.+++...+. +++.|+.++ .+..||+.+.. .+.+... .....
T Consensus 85 d~~~~~~~~~~~---~~~~~~~v~~l~~~~~~-~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~ 152 (342)
T 1yfq_A 85 DLIGSPSFQALT---NNEANLGICRICKYGDD-KLIAASWDG-----LIEVIDPRNYGDGVIAVKNLNSNNT---KVKNK 152 (342)
T ss_dssp CSSSSSSEEECB---SCCCCSCEEEEEEETTT-EEEEEETTS-----EEEEECHHHHTTBCEEEEESCSSSS---SSCCC
T ss_pred EeccCCceEecc---ccCCCCceEEEEeCCCC-EEEEEcCCC-----eEEEEcccccccccccccCCeeeEE---eeCCc
Confidence 99 888775554 11112222234444455 666666543 58888875400 1112111 11222
Q ss_pred ceEEEEECCEEEEEcccCCCCCcCeEEEEECCC-Cc--eEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCC
Q 010115 302 GCCGVLCGTKWYIAGGGSRKKRHAETLIFDILK-GE--WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPS 378 (518)
Q Consensus 302 ~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~-~~--W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~ 378 (518)
-.++....+. ++.|+.+ ..+.+||+.+ .. ...... + .......+.+. +..+.+++.|+.++
T Consensus 153 v~~~~~~~~~-l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~-~-----~~~~i~~i~~~-~~~~~~l~~~~~dg--- 216 (342)
T 1yfq_A 153 IFTMDTNSSR-LIVGMNN-----SQVQWFRLPLCEDDNGTIEES-G-----LKYQIRDVALL-PKEQEGYACSSIDG--- 216 (342)
T ss_dssp EEEEEECSSE-EEEEEST-----TEEEEEESSCCTTCCCEEEEC-S-----CSSCEEEEEEC-SGGGCEEEEEETTS---
T ss_pred eEEEEecCCc-EEEEeCC-----CeEEEEECCccccccceeeec-C-----CCCceeEEEEC-CCCCCEEEEEecCC---
Confidence 2233333555 5555544 3489999887 33 332221 1 11122333333 10234667777643
Q ss_pred CcEEEEEcccC
Q 010115 379 NQVEVLSIEKN 389 (518)
Q Consensus 379 ~~v~~yd~~~~ 389 (518)
.+.+|+....
T Consensus 217 -~i~i~~~~~~ 226 (342)
T 1yfq_A 217 -RVAVEFFDDQ 226 (342)
T ss_dssp -EEEEEECCTT
T ss_pred -cEEEEEEcCC
Confidence 4666665543
No 206
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=90.14 E-value=10 Score=33.99 Aligned_cols=153 Identities=12% Similarity=0.189 Sum_probs=82.5
Q ss_pred eEEEEECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeec---CCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCc
Q 010115 150 HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK---GDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLND 225 (518)
Q Consensus 150 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~---~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~ 225 (518)
-+++..++++|+|=|. .+|+++.....+...... ..+|. ....+... .++++|+|-| +.
T Consensus 27 DAi~~~~g~~y~Fkg~--------~~wr~~~~~~~~~p~~I~~~wp~Lp~-~iDAa~~~~~~~~iyfFkG--------~~ 89 (207)
T 1pex_A 27 DAITSLRGETMIFKDR--------FFWRLHPQQVDAELFLTKSFWPELPN-RIDAAYEHPSHDLIFIFRG--------RK 89 (207)
T ss_dssp SEEEEETTEEEEEETT--------EEEEECSSSSCCEEEEHHHHCTTSCS-SCCEEEEETTTTEEEEEET--------TE
T ss_pred eEEEeCCCcEEEEECC--------EEEEEeCCCcCCCceehhHhccCCCC-CccEEEEeccCCcEEEEcc--------CE
Confidence 3555679999999664 488888765444322211 13453 23322222 2589999965 34
Q ss_pred EEEEEcCCCcE---EEeecCCCCCC--CCCCcEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCC---
Q 010115 226 LHMFDLKSLTW---LPLHCTGTGPS--PRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFH--- 296 (518)
Q Consensus 226 ~~~yd~~t~~W---~~~~~~g~~p~--~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~--- 296 (518)
+|+|+-.+..- ..+... -+|. ..... |... ++..+|+|-| +..|+||..+++ +.. +.+
T Consensus 90 ~w~~~~~~~~~gyPk~I~~~-GlP~~~~~IDA-A~~~~~~gk~yfFkG-------~~ywr~d~~~~~---~d~-gyPr~i 156 (207)
T 1pex_A 90 FWALNGYDILEGYPKKISEL-GLPKEVKKISA-AVHFEDTGKTLLFSG-------NQVWRYDDTNHI---MDK-DYPRLI 156 (207)
T ss_dssp EEEESTTCCCTTCSEESTTT-TCCTTCCCCCE-EEECTTTSEEEEEET-------TEEEEEETTTTE---ECS-SCCCBH
T ss_pred EEEEeCCeeccCCceecccc-CCCCCCccccE-EEEeCCCCEEEEEeC-------CEEEEEeCcCcc---ccC-CCCccH
Confidence 66775322110 122211 1332 12332 3233 3345888876 479999987653 221 000
Q ss_pred -----CCCCcceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEE
Q 010115 297 -----PSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSV 339 (518)
Q Consensus 297 -----p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 339 (518)
-.+..-.+|...++++|++-| +..|+||..+.+-..
T Consensus 157 ~~~~~Gip~~iDaAf~~~g~~YfFkg-------~~y~rf~~~~~~v~~ 197 (207)
T 1pex_A 157 EEDFPGIGDKVDAVYEKNGYIYFFNG-------PIQFEYSIWSNRIVR 197 (207)
T ss_dssp HHHSTTSCSCCSEEEEETTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred HHcCCCCCCCccEEEEcCCcEEEEEC-------CEEEEEeCCccEEec
Confidence 112223345556999999977 458999988766544
No 207
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=90.00 E-value=23 Score=37.87 Aligned_cols=148 Identities=15% Similarity=0.084 Sum_probs=82.0
Q ss_pred eeEEEEECCCC--cEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCC---cEEEeecCCCCCC
Q 010115 173 VSVWTFDTETE--CWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL---TWLPLHCTGTGPS 247 (518)
Q Consensus 173 ~~v~~yd~~t~--~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~---~W~~~~~~g~~p~ 247 (518)
+++|.+|+.+. +|..+.. +...........++.||+....+. ....++.+|+.+. .|+.+... ..
T Consensus 259 ~~i~~~d~~~~~~~~~~l~~----~~~~~~~~~~~~g~~l~~~t~~~~---~~~~l~~~d~~~~~~~~~~~l~~~---~~ 328 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLLTVQG----DLDADVSLVDNKGSTLYLLTNRDA---PNRRLVTVDAANPGPAHWRDLIPE---RQ 328 (693)
T ss_dssp CEEEEEETTSTTCCCEEEEC----SSSSCEEEEEEETTEEEEEECTTC---TTCEEEEEETTSCCGGGCEEEECC---CS
T ss_pred cEEEEEECCCCCCceEEEeC----CCCceEEEEeccCCEEEEEECCCC---CCCEEEEEeCCCCCccccEEEecC---CC
Confidence 58999998776 7888764 221121223446789999876543 2357999998763 48877521 11
Q ss_pred CCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE---CCEEEEEcccCCCCCc
Q 010115 248 PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC---GTKWYIAGGGSRKKRH 324 (518)
Q Consensus 248 ~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~ 324 (518)
. .. ..... ++.|++..-.++ ...++.+|+++...+.+.. |.... ...+.. ++.+++... +...-
T Consensus 329 ~-~~-~~s~~-g~~lv~~~~~~g---~~~l~~~d~~g~~~~~l~~----p~~~~-~~~~~~~~d~~~l~~~~s--s~~tP 395 (693)
T 3iuj_A 329 Q-VL-TVHSG-SGYLFAEYMVDA---TARVEQFDYEGKRVREVAL----PGLGS-VSGFNGKHDDPALYFGFE--NYAQP 395 (693)
T ss_dssp S-CE-EEEEE-TTEEEEEEEETT---EEEEEEECTTSCEEEEECC----SSSSE-EEECCCCTTCSCEEEEEE--CSSSC
T ss_pred C-EE-EEEEE-CCEEEEEEEECC---eeEEEEEECCCCeeEEeec----CCCce-EEeeecCCCCCEEEEEec--CCCCC
Confidence 1 11 33333 443444332221 3468999988766665532 22111 111111 234444322 11233
Q ss_pred CeEEEEECCCCceEEeecC
Q 010115 325 AETLIFDILKGEWSVAITS 343 (518)
Q Consensus 325 ~~v~~yd~~~~~W~~~~~~ 343 (518)
..++.||+.+++++.+...
T Consensus 396 ~~l~~~d~~~g~~~~l~~~ 414 (693)
T 3iuj_A 396 PTLYRFEPKSGAISLYRAS 414 (693)
T ss_dssp CEEEEECTTTCCEEEEECC
T ss_pred CEEEEEECCCCeEEEEEeC
Confidence 6799999999988887643
No 208
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=89.74 E-value=11 Score=37.48 Aligned_cols=146 Identities=10% Similarity=0.056 Sum_probs=70.1
Q ss_pred EEEEcccCCCCcccCcEEEEEcCCC---cEEEeecCCCCCCCCCCcEEEEEC-CcEEEEEcCCCCCCCCCcEEEEEcCCC
Q 010115 210 LILFGGEDGKRRKLNDLHMFDLKSL---TWLPLHCTGTGPSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETM 285 (518)
Q Consensus 210 iyv~GG~~~~~~~~~~~~~yd~~t~---~W~~~~~~g~~p~~r~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~ 285 (518)
+++.|+.++ .+.+||+.+. .+..............-.+++... +..+++.|+.+ ..|..||+.+.
T Consensus 196 ~l~s~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d-----g~i~i~d~~~~ 264 (430)
T 2xyi_A 196 YLLSASDDH------TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD-----QKLMIWDTRNN 264 (430)
T ss_dssp EEEEECTTS------CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETT-----SEEEEEETTCS
T ss_pred eEEEEeCCC------eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCC-----CeEEEEECCCC
Confidence 677776554 3788888762 121110000001111222333332 33366666554 35899998764
Q ss_pred e----EEEeecCCCCCCCCcceEEEEE---CCEEEEEcccCCCCCcCeEEEEECCCCc--eEEeecCCCCCCCCCCCceE
Q 010115 286 I----WTRIKIRGFHPSPRAGCCGVLC---GTKWYIAGGGSRKKRHAETLIFDILKGE--WSVAITSPSSSVTSNKGFTL 356 (518)
Q Consensus 286 ~----W~~v~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~r~~~s~ 356 (518)
. -..+... . ....++.+ +..+++.|+.++ .+.+||+.+.. -..+.. .......
T Consensus 265 ~~~~~~~~~~~~-----~-~~v~~i~~~p~~~~~l~tg~~dg-----~v~vwd~~~~~~~~~~~~~-------h~~~v~~ 326 (430)
T 2xyi_A 265 NTSKPSHTVDAH-----T-AEVNCLSFNPYSEFILATGSADK-----TVALWDLRNLKLKLHSFES-------HKDEIFQ 326 (430)
T ss_dssp CSSSCSEEEECC-----S-SCEEEEEECSSCTTEEEEEETTS-----EEEEEETTCTTSCSEEEEC-------CSSCEEE
T ss_pred CCCcceeEeecC-----C-CCeEEEEeCCCCCCEEEEEeCCC-----eEEEEeCCCCCCCeEEeec-------CCCCEEE
Confidence 2 1122111 1 11122233 334788887654 48899987632 222211 1112233
Q ss_pred EEEeeCCccEEEEEcCCCCCCCCcEEEEEcccC
Q 010115 357 VLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (518)
Q Consensus 357 ~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~ 389 (518)
+.+.. +...+++.||.++ .+.+||+...
T Consensus 327 i~~sp-~~~~~l~s~~~d~----~i~iwd~~~~ 354 (430)
T 2xyi_A 327 VQWSP-HNETILASSGTDR----RLHVWDLSKI 354 (430)
T ss_dssp EEECS-SCTTEEEEEETTS----CCEEEEGGGT
T ss_pred EEECC-CCCCEEEEEeCCC----cEEEEeCCCC
Confidence 33432 2335677777653 5888888763
No 209
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=89.65 E-value=15 Score=36.11 Aligned_cols=196 Identities=9% Similarity=0.042 Sum_probs=100.5
Q ss_pred EEEEECCC--CcEEEeeecCCCCCCCcceEEEEE---CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCC-
Q 010115 175 VWTFDTET--ECWSVVEAKGDIPVARSGHTVVRA---SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSP- 248 (518)
Q Consensus 175 v~~yd~~t--~~W~~~~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~- 248 (518)
+++++... .+|+...+ .+....-++++.. .+.||+.+..... -..+++.+-...+|+.+.....++..
T Consensus 33 l~~~~~~~~g~~W~~~~~---~~~~~~v~~i~~dp~~~~~l~~g~~~g~~---g~gl~~s~D~G~tW~~~~~~~~~~~~~ 106 (394)
T 3b7f_A 33 AWFLASDPARRTWELRGP---VFLGHTIHHIVQDPREPERMLMAARTGHL---GPTVFRSDDGGGNWTEATRPPAFNKAP 106 (394)
T ss_dssp EEEEEECTTSCSEEEEEE---ESTTSEEEEEEECSSSTTCEEEEEEC--C---CEEEEEESSTTSCCEECSBCCCCCCCC
T ss_pred eEEEECCCCCCCceECCc---cCCCCceEEEEECCCCCCeEEEEecCCCC---CccEEEeCCCCCCceECCccccCCCcc
Confidence 67777655 68998753 1222333455554 4678876532211 12477776667899998632112211
Q ss_pred -C-----CCc--EEEEE--C-CcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCC--------------CCcce
Q 010115 249 -R-----SNH--VAALY--D-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPS--------------PRAGC 303 (518)
Q Consensus 249 -r-----~~~--~~~~~--~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~--------------~r~~~ 303 (518)
+ ... ++++. + ...||+.+. ...|++.+-...+|+.+......|. ....+
T Consensus 107 ~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~ 180 (394)
T 3b7f_A 107 EGETGRVVDHVFWLTPGHASEPGTWYAGTS------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMH 180 (394)
T ss_dssp ----CCCCCEEEEEEECCTTSTTCEEEEEE------TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEE
T ss_pred cccccccccceeEEEeCCCCCCCEEEEEec------CCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCcee
Confidence 1 111 22332 1 343666532 1358888888899999864211121 11223
Q ss_pred EEEEE---CCEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCC--CCCC--CCC--ceEEEEeeCCccEEEEEcCCC
Q 010115 304 CGVLC---GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSS--SVTS--NKG--FTLVLVQHKEKDFLVAFGGIK 374 (518)
Q Consensus 304 ~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~--~~~~--r~~--~s~~~~~~~~~~~l~v~GG~~ 374 (518)
++++. .+.||+.... ..+++.+-...+|+.+...... .+.. ..+ ...+.+...+.+.||+..+
T Consensus 181 ~i~~d~~~~~~l~vg~~~------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~-- 252 (394)
T 3b7f_A 181 SILVDPRDPKHLYIGMSS------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH-- 252 (394)
T ss_dssp EEEECTTCTTCEEEEEET------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET--
T ss_pred EEEECCCCCCEEEEEECC------CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC--
Confidence 33332 2567776432 2388888888999987531111 1111 111 2233333223356766332
Q ss_pred CCCCCcEEEEEcccCCcccc
Q 010115 375 KEPSNQVEVLSIEKNESSMG 394 (518)
Q Consensus 375 ~~~~~~v~~yd~~~~~w~~~ 394 (518)
..+++.+-...+|...
T Consensus 253 ----~gl~~s~D~G~tW~~~ 268 (394)
T 3b7f_A 253 ----CGIYRMDRREGVWKRI 268 (394)
T ss_dssp ----TEEEEEETTTTEEECG
T ss_pred ----CeEEEeCCCCCcceEC
Confidence 2477777777777654
No 210
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=89.59 E-value=22 Score=37.20 Aligned_cols=124 Identities=19% Similarity=0.156 Sum_probs=68.7
Q ss_pred eEEEEECCEEEEEcCcCCCCCCCcEEEEEcCCC--cEEEcccccccCCCCCCCCCCCc--cceEEEEECCEEEEEcCcCC
Q 010115 92 HAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPAC--RGHSLISWGKKVLLVGGKTD 167 (518)
Q Consensus 92 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~iyv~GG~~~ 167 (518)
.+.++.++.||+.... +.++.+|..+. .|+.-..... ...+.+ ...+.++.+++||+...
T Consensus 62 ~~P~v~~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~-------~~~~~~~~~~~g~a~~~~~v~~~t~--- 125 (582)
T 1flg_A 62 SQAIVSDGVIYVTASY------SRLFALDAKTGKRLWTYNHRLPD-------DIRPCCDVVNRGAAIYGDKVFFGTL--- 125 (582)
T ss_dssp CCCEEETTEEEEEETT------TEEEEEESSSCCEEEEEECCCCT-------TCCCSSCSCCCCCEEETTEEEEEET---
T ss_pred eccEEECCEEEEEcCC------CCEEEEECCCCcEEEEEcCCCCc-------ccccccccCCCccEEECCEEEEEeC---
Confidence 3446689999998763 23899999765 6987543210 000000 11334567899988532
Q ss_pred CCCCceeEEEEECCCCc--EEEeeecCCCCCCC--cceEEEEECC------EEEEEcccCCCCcccCcEEEEEcCCCc--
Q 010115 168 SGSDRVSVWTFDTETEC--WSVVEAKGDIPVAR--SGHTVVRASS------VLILFGGEDGKRRKLNDLHMFDLKSLT-- 235 (518)
Q Consensus 168 ~~~~~~~v~~yd~~t~~--W~~~~~~~~~p~~r--~~~~~~~~~~------~iyv~GG~~~~~~~~~~~~~yd~~t~~-- 235 (518)
...++.+|.+|.+ |+.-.. .+... ...+-++.++ .||+ |........-..++.||.++.+
T Consensus 126 ----dg~l~AlD~~TG~~~W~~~~~---~~~~~~~~~~sP~v~~~~~~G~~~v~v-g~~~~e~~~~g~v~alD~~tG~~~ 197 (582)
T 1flg_A 126 ----DASVVALNKNTGKVVWKKKFA---DHGAGYTMTGAPTIVKDGKTGKVLLIH-GSSGDEFGVVGRLFARDPDTGEEI 197 (582)
T ss_dssp ----TTEEEEEESSSCCEEEEEECS---CGGGTCBCCSCCEEEECTTTCCEEEEE-CCBCGGGCCBCEEEEECTTTCCEE
T ss_pred ----CCEEEEEECCCCCEEeeecCC---CCCcCcccccCCEEeCCCcCCcEEEEE-eccccccCCCCEEEEEECCCCCEE
Confidence 1269999999876 886432 11111 1112234455 5655 3321111123568999998754
Q ss_pred EEEe
Q 010115 236 WLPL 239 (518)
Q Consensus 236 W~~~ 239 (518)
|+.-
T Consensus 198 W~~~ 201 (582)
T 1flg_A 198 WMRP 201 (582)
T ss_dssp EEEE
T ss_pred eecC
Confidence 8653
No 211
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=89.48 E-value=16 Score=35.42 Aligned_cols=150 Identities=15% Similarity=0.135 Sum_probs=75.1
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCC--cEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcC
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETE--CWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLK 232 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~ 232 (518)
++.+++.|+.+. .+..||+... .-..+.. ..... .+++. -++..++.|+.++ .+.+||+.
T Consensus 217 ~~~~l~sgs~D~------~v~~wd~~~~~~~~~~~~~----h~~~v-~~v~~~p~~~~l~s~s~D~------~i~lwd~~ 279 (380)
T 3iz6_a 217 NANMFISGSCDT------TVRLWDLRITSRAVRTYHG----HEGDI-NSVKFFPDGQRFGTGSDDG------TCRLFDMR 279 (380)
T ss_dssp SCCEEEEEETTS------CEEEEETTTTCCCCEEECC----CSSCC-CEEEECTTSSEEEEECSSS------CEEEEETT
T ss_pred CCCEEEEEECCC------eEEEEECCCCCcceEEECC----cCCCe-EEEEEecCCCeEEEEcCCC------eEEEEECC
Confidence 567888888754 5778887632 2222211 11111 12222 2466777777654 37889998
Q ss_pred CCcEEEeecCCCC--CCC-CCCcEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEE-eecCCCCCCCCcceEEEE
Q 010115 233 SLTWLPLHCTGTG--PSP-RSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR-IKIRGFHPSPRAGCCGVL 307 (518)
Q Consensus 233 t~~W~~~~~~g~~--p~~-r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~-v~~~~~~p~~r~~~~~~~ 307 (518)
+..-...-..... ... ....+++.. +++ +++.|+.++ .+..||..+.+-.. +.........+. .+++.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg-----~i~vwd~~~~~~~~~~~~~~~~h~~~v-~~l~~ 352 (380)
T 3iz6_a 280 TGHQLQVYNREPDRNDNELPIVTSVAFSISGR-LLFAGYSNG-----DCYVWDTLLAEMVLNLGTLQNSHEGRI-SCLGL 352 (380)
T ss_dssp TTEEEEEECCCCSSSCCSSCSCSEEEECSSSS-EEEEECTTS-----CEEEEETTTCCEEEEECCSCSSCCCCC-CEEEE
T ss_pred CCcEEEEecccccccccccCceEEEEECCCCC-EEEEEECCC-----CEEEEECCCCceEEEEecccCCCCCce-EEEEE
Confidence 7754433211000 000 012233443 455 677776544 59999987655332 211100011111 12222
Q ss_pred -ECCEEEEEcccCCCCCcCeEEEEECCC
Q 010115 308 -CGTKWYIAGGGSRKKRHAETLIFDILK 334 (518)
Q Consensus 308 -~~~~iyv~GG~~~~~~~~~v~~yd~~~ 334 (518)
-+++.++.|+.++. +.++++..
T Consensus 353 s~dg~~l~sgs~D~~-----i~iW~~~~ 375 (380)
T 3iz6_a 353 SSDGSALCTGSWDKN-----LKIWAFSG 375 (380)
T ss_dssp CSSSSEEEEECTTSC-----EEEEECCS
T ss_pred CCCCCEEEEeeCCCC-----EEEEecCC
Confidence 26778888887654 66776654
No 212
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=89.32 E-value=17 Score=35.45 Aligned_cols=153 Identities=14% Similarity=0.185 Sum_probs=76.7
Q ss_pred CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCe
Q 010115 207 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI 286 (518)
Q Consensus 207 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 286 (518)
+++.++.|+.+. .+.+||+.+.+-...- ... ...-.+++...+...++.|+.++ .+..||+.+.+
T Consensus 134 dg~~l~s~~~d~------~i~iwd~~~~~~~~~~---~~h-~~~v~~~~~~p~~~~l~s~s~d~-----~v~iwd~~~~~ 198 (393)
T 1erj_A 134 DGKFLATGAEDR------LIRIWDIENRKIVMIL---QGH-EQDIYSLDYFPSGDKLVSGSGDR-----TVRIWDLRTGQ 198 (393)
T ss_dssp TSSEEEEEETTS------CEEEEETTTTEEEEEE---CCC-SSCEEEEEECTTSSEEEEEETTS-----EEEEEETTTTE
T ss_pred CCCEEEEEcCCC------eEEEEECCCCcEEEEE---ccC-CCCEEEEEEcCCCCEEEEecCCC-----cEEEEECCCCe
Confidence 466777777653 4888999887654432 111 11122333333332566666543 58899998876
Q ss_pred EEEeecCCCCCCCCcceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCC-CCCceEEEEeeCC
Q 010115 287 WTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTS-NKGFTLVLVQHKE 363 (518)
Q Consensus 287 W~~v~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~-r~~~s~~~~~~~~ 363 (518)
....... .. ...+++.. ++++++.|+.++. +.+||+.+..-............. ......+.+. .
T Consensus 199 ~~~~~~~---~~--~v~~~~~~~~~~~~l~~~s~d~~-----v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~--~ 266 (393)
T 1erj_A 199 CSLTLSI---ED--GVTTVAVSPGDGKYIAAGSLDRA-----VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT--R 266 (393)
T ss_dssp EEEEEEC---SS--CEEEEEECSTTCCEEEEEETTSC-----EEEEETTTCCEEEEEC------CCCSSCEEEEEEC--T
T ss_pred eEEEEEc---CC--CcEEEEEECCCCCEEEEEcCCCc-----EEEEECCCCcEEEeecccccCCCCCCCCEEEEEEC--C
Confidence 5433221 11 11222222 5678888876644 889998877643322111110011 1112233333 2
Q ss_pred ccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 364 KDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 364 ~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
.+.+++.|+.++ .+.+||+.+..
T Consensus 267 ~g~~l~s~s~d~----~v~~wd~~~~~ 289 (393)
T 1erj_A 267 DGQSVVSGSLDR----SVKLWNLQNAN 289 (393)
T ss_dssp TSSEEEEEETTS----EEEEEEC----
T ss_pred CCCEEEEEeCCC----EEEEEECCCCC
Confidence 234566777654 57888876543
No 213
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=89.27 E-value=23 Score=37.02 Aligned_cols=121 Identities=14% Similarity=0.169 Sum_probs=66.7
Q ss_pred EEEEECCEEEEEcCcCCCCCCceeEEEEECCCCc--EEEeeecCCCCCC---CcceEEEEECCEEEEEcccCCCCcccCc
Q 010115 151 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDIPVA---RSGHTVVRASSVLILFGGEDGKRRKLND 225 (518)
Q Consensus 151 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~p~~---r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 225 (518)
+-++.++.||+..... .++.+|.+|.+ |+.-........+ ....+.++.+++||+... -..
T Consensus 63 ~P~v~~g~vyv~~~~~-------~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~-------dg~ 128 (582)
T 1flg_A 63 QAIVSDGVIYVTASYS-------RLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL-------DAS 128 (582)
T ss_dssp CCEEETTEEEEEETTT-------EEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET-------TTE
T ss_pred ccEEECCEEEEEcCCC-------CEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC-------CCE
Confidence 3456799999986531 38999998876 9875431110000 112334567889888521 245
Q ss_pred EEEEEcCCCc--EEEeecCCCCCCCC--CCcEEEEECC----c-EEEEEcCCCC-CCCCCcEEEEEcCCC--eEEE
Q 010115 226 LHMFDLKSLT--WLPLHCTGTGPSPR--SNHVAALYDD----K-NLLIFGGSSK-SKTLNDLYSLDFETM--IWTR 289 (518)
Q Consensus 226 ~~~yd~~t~~--W~~~~~~g~~p~~r--~~~~~~~~~~----~-~lyv~GG~~~-~~~~~~v~~yd~~~~--~W~~ 289 (518)
++.+|.++.+ |+.-.. .+... ...+-++.++ + .+|+ |.... ......++.||+++. .|+.
T Consensus 129 l~AlD~~TG~~~W~~~~~---~~~~~~~~~~sP~v~~~~~~G~~~v~v-g~~~~e~~~~g~v~alD~~tG~~~W~~ 200 (582)
T 1flg_A 129 VVALNKNTGKVVWKKKFA---DHGAGYTMTGAPTIVKDGKTGKVLLIH-GSSGDEFGVVGRLFARDPDTGEEIWMR 200 (582)
T ss_dssp EEEEESSSCCEEEEEECS---CGGGTCBCCSCCEEEECTTTCCEEEEE-CCBCGGGCCBCEEEEECTTTCCEEEEE
T ss_pred EEEEECCCCCEEeeecCC---CCCcCcccccCCEEeCCCcCCcEEEEE-eccccccCCCCEEEEEECCCCCEEeec
Confidence 8999998764 876431 11110 1112234444 2 2444 43211 112357999999765 4865
No 214
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=89.04 E-value=21 Score=38.10 Aligned_cols=151 Identities=8% Similarity=-0.020 Sum_probs=78.3
Q ss_pred CceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCc---EEEeecCCCCCC
Q 010115 171 DRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT---WLPLHCTGTGPS 247 (518)
Q Consensus 171 ~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~---W~~~~~~g~~p~ 247 (518)
..+++|.+|..+..|+.+... .. .. ...+..++.+|+....+. ....++.+|+.+.. |+.+... .+
T Consensus 250 ~~~~l~~~~~~~~~~~~l~~~---~~-~~-~~~~~~~g~l~~~s~~~~---~~~~l~~~d~~~~~~~~~~~l~~~--~~- 318 (695)
T 2bkl_A 250 SENDVYWKRPGEKDFRLLVKG---VG-AK-YEVHAWKDRFYVLTDEGA---PRQRVFEVDPAKPARASWKEIVPE--DS- 318 (695)
T ss_dssp TEEEEEEECTTCSSCEEEEEC---SS-CC-EEEEEETTEEEEEECTTC---TTCEEEEEBTTBCSGGGCEEEECC--CS-
T ss_pred CceEEEEEcCCCCceEEeecC---CC-ce-EEEEecCCcEEEEECCCC---CCCEEEEEeCCCCCccCCeEEecC--CC-
Confidence 356789998888889888751 11 11 222234556666543321 23578999987654 8887521 11
Q ss_pred CCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEE-ECC-EEEEEcccCCCCCcC
Q 010115 248 PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGT-KWYIAGGGSRKKRHA 325 (518)
Q Consensus 248 ~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~ 325 (518)
.......+..++. +++....++ ...++.+++....-+.+.. |.......... -++ .+++... + ...-.
T Consensus 319 ~~~l~~~~~~~~~-lv~~~~~dg---~~~l~~~~~~g~~~~~l~~----~~~~~v~~~~~s~d~~~l~~~~s-s-~~~P~ 388 (695)
T 2bkl_A 319 SASLLSVSIVGGH-LSLEYLKDA---TSEVRVATLKGKPVRTVQL----PGVGAASNLMGLEDLDDAYYVFT-S-FTTPR 388 (695)
T ss_dssp SCEEEEEEEETTE-EEEEEEETT---EEEEEEEETTCCEEEECCC----SSSSEECCCBSCTTCSEEEEEEE-E-TTEEE
T ss_pred CCeEEEEEEECCE-EEEEEEECC---EEEEEEEeCCCCeeEEecC----CCCeEEEEeecCCCCCEEEEEEc-C-CCCCC
Confidence 1111223344555 666654333 3468899976554444421 11111111111 123 4443321 1 12235
Q ss_pred eEEEEECCCCceEEeec
Q 010115 326 ETLIFDILKGEWSVAIT 342 (518)
Q Consensus 326 ~v~~yd~~~~~W~~~~~ 342 (518)
.++.||+.+++.+.+..
T Consensus 389 ~v~~~d~~~g~~~~l~~ 405 (695)
T 2bkl_A 389 QIYKTSVSTGKSELWAK 405 (695)
T ss_dssp EEEEEETTTCCEEEEEE
T ss_pred EEEEEECCCCcEEEEec
Confidence 68999999888776653
No 215
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=88.99 E-value=16 Score=34.59 Aligned_cols=207 Identities=11% Similarity=-0.066 Sum_probs=104.3
Q ss_pred eEEEEE--CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCC
Q 010115 92 HAAAVI--GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTD 167 (518)
Q Consensus 92 ~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~ 167 (518)
+++++. ++.|||.-.. ..++++|+.+...+.+..... ..+...-..+++. ++.||+.-....
T Consensus 83 ~gi~~~~~~g~l~v~d~~------~~i~~~d~~~g~~~~~~~~~~--------~~~~~~p~~i~~d~~~G~l~v~d~~~~ 148 (322)
T 2fp8_A 83 YDISYNLQNNQLYIVDCY------YHLSVVGSEGGHATQLATSVD--------GVPFKWLYAVTVDQRTGIVYFTDVSTL 148 (322)
T ss_dssp EEEEEETTTTEEEEEETT------TEEEEECTTCEECEEEESEET--------TEECSCEEEEEECTTTCCEEEEESCSS
T ss_pred ceEEEcCCCCcEEEEECC------CCEEEEeCCCCEEEEecccCC--------CCcccccceEEEecCCCEEEEECCccc
Confidence 455555 5789987431 237888888765554432100 0011122334443 468888642210
Q ss_pred C-----------CCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-C-CEEEEEcccCCCCcccCcEEEEEcCC-
Q 010115 168 S-----------GSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-S-SVLILFGGEDGKRRKLNDLHMFDLKS- 233 (518)
Q Consensus 168 ~-----------~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~yd~~t- 233 (518)
. ......+++||+.+.+.+.+... +. .-..++.. + +.||+.-. ..+.+++|++..
T Consensus 149 ~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~--~~---~p~gia~~~dg~~lyv~d~------~~~~I~~~~~~~~ 217 (322)
T 2fp8_A 149 YDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE--LH---VPGGAEVSADSSFVLVAEF------LSHQIVKYWLEGP 217 (322)
T ss_dssp CCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE--ES---CCCEEEECTTSSEEEEEEG------GGTEEEEEESSST
T ss_pred ccccccceehcccCCCceEEEEeCCCCEEEEeccC--Cc---cCcceEECCCCCEEEEEeC------CCCeEEEEECCCC
Confidence 0 11235799999998876655331 11 11234443 2 46888632 135689999875
Q ss_pred --CcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCC-----CCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEE
Q 010115 234 --LTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKS-----KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGV 306 (518)
Q Consensus 234 --~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~-----~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~ 306 (518)
.+.+.+. ..+.| ..+++-.+..|||....... ...+.+.+||++...-..+......+ .....+++
T Consensus 218 ~~~~~~~~~---~~~gP---~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~-~~~~~~~~ 290 (322)
T 2fp8_A 218 KKGTAEVLV---KIPNP---GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFA-GEHFEQIQ 290 (322)
T ss_dssp TTTCEEEEE---ECSSE---EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTT-TSCCCEEE
T ss_pred cCCccceEE---eCCCC---CCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCc-cccceEEE
Confidence 2444433 12211 23444433347776432100 01245899999766555554321111 12223344
Q ss_pred EECCEEEEEcccCCCCCcCeEEEEECCCC
Q 010115 307 LCGTKWYIAGGGSRKKRHAETLIFDILKG 335 (518)
Q Consensus 307 ~~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 335 (518)
..+++|||..... +.+.+|++..+
T Consensus 291 ~~~g~L~v~~~~~-----~~i~~~~~~~~ 314 (322)
T 2fp8_A 291 EHDGLLYIGTLFH-----GSVGILVYDKK 314 (322)
T ss_dssp EETTEEEEECSSC-----SEEEEEEC---
T ss_pred EeCCEEEEeecCC-----CceEEEecccc
Confidence 4588999875432 45888887643
No 216
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=88.96 E-value=14 Score=34.09 Aligned_cols=224 Identities=15% Similarity=0.090 Sum_probs=101.7
Q ss_pred CcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecC
Q 010115 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 192 (518)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~ 192 (518)
+.|.++|..+.+..+.-.. ......-.+++.. +++.++.|+.+. .+..+|..+++-.....
T Consensus 45 ~tV~iWd~~tg~~~~~~~~----------~~~~~~V~~v~~~~~~~~l~sgs~Dg------~v~iw~~~~~~~~~~~~-- 106 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQM----------EQPGEYISSVAWIKEGNYLAVGTSSA------EVQLWDVQQQKRLRNMT-- 106 (318)
T ss_dssp TEEEEEETTTCCEEEEEEC----------CSTTCCEEEEEECTTSSEEEEEETTS------EEEEEETTTTEEEEEEE--
T ss_pred CEEEEEECCCCCEEEEEEe----------cCCCCeEEEEEECCCCCEEEEEECCC------cEEEeecCCceeEEEec--
Confidence 4688899988766554321 1111111222222 567777887653 68889998887443322
Q ss_pred CCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEE-CCcEEEEEcCCCCC
Q 010115 193 DIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKS 271 (518)
Q Consensus 193 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~~~~ 271 (518)
....+ .......+.+.+.|+.+. .+..++..+.........+ . .......... .+. +++.|+.++
T Consensus 107 -~h~~~--~~~~~~~~~~l~s~~~~~------~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~-~l~s~~~d~- 172 (318)
T 4ggc_A 107 -SHSAR--VGSLSWNSYILSSGSRSG------HIHHHDVRVAEHHVATLSG--H-SQEVCGLRWAPDGR-HLASGGNDN- 172 (318)
T ss_dssp -CCSSC--EEEEEEETTEEEEEETTS------EEEEEETTSSSCEEEEEEC--C-SSCEEEEEECTTSS-EEEEEETTS-
T ss_pred -Cccce--EEEeecCCCEEEEEecCC------ceEeeecCCCceeEEEEcC--c-cCceEEEEEcCCCC-EEEEEecCc-
Confidence 11111 222334455556655443 2444555443332221111 1 1111122222 344 566666543
Q ss_pred CCCCcEEEEEcCCCeE--EEeecCCCCCCCCcceEEEEE--CCEE-EEEcccCCCCCcCeEEEEECCCCceEEeecCCCC
Q 010115 272 KTLNDLYSLDFETMIW--TRIKIRGFHPSPRAGCCGVLC--GTKW-YIAGGGSRKKRHAETLIFDILKGEWSVAITSPSS 346 (518)
Q Consensus 272 ~~~~~v~~yd~~~~~W--~~v~~~~~~p~~r~~~~~~~~--~~~i-yv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~ 346 (518)
.+..||..+.+- ..+.... .......+.+.. +..+ ++..|... ..+.++|.....-.......
T Consensus 173 ----~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~----~~i~lwd~~~~~~~~~~~~~-- 240 (318)
T 4ggc_A 173 ----LVNVWPSAPGEGGWVPLQTFT--QHQGAVKAVAWCPWQSNVLATGGGTSD----RHIRIWNVCSGACLSAVDAH-- 240 (318)
T ss_dssp ----CEEEEESSCBTTBSCCSEEEC--CCCSCEEEEEECTTSTTEEEEEECTTT----CEEEEEETTTCCEEEEEECS--
T ss_pred ----ceeEEECCCCcccccceeeec--ccCCceEEEEecCCCCcEEEEEecCCC----CEEEEEecccccccccccce--
Confidence 478888765431 1111110 001111122222 3333 34444322 34778888776655433211
Q ss_pred CCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 347 SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 347 ~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
.......+. .....+++.+|..+ ..+.+||+.+.+
T Consensus 241 -----~~v~~~~~~-~~~~~~~~~sg~~d---~~i~iwd~~~~~ 275 (318)
T 4ggc_A 241 -----SQVCSILWS-PHYKELISGHGFAQ---NQLVIWKYPTMA 275 (318)
T ss_dssp -----SCEEEEEEE-TTTTEEEEEECTTT---CCEEEEETTTCC
T ss_pred -----eeeeeeeec-ccccceEEEEEcCC---CEEEEEECCCCc
Confidence 112233332 33455665555432 268888887654
No 217
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=88.80 E-value=18 Score=35.05 Aligned_cols=66 Identities=15% Similarity=0.321 Sum_probs=39.3
Q ss_pred CCEEEEEcccCC-----CCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEE
Q 010115 309 GTKWYIAGGGSR-----KKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEV 383 (518)
Q Consensus 309 ~~~iyv~GG~~~-----~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~ 383 (518)
++++|+....+. ....+.++++|+++.+-.. ..+.. . ..++ .+...+ .+||+.++ +.|.+
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~--~i~~~----~-p~~i-a~spdg-~~l~v~n~------~~v~v 329 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVA--RIPGR----D-ALSM-TIDQQR-NLMLTLDG------GNVNV 329 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEE--EEECT----T-CCEE-EEETTT-TEEEEECS------SCEEE
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECCCCcEEE--EEecC----C-eeEE-EECCCC-CEEEEeCC------CeEEE
Confidence 578998754111 1234689999998875433 22211 1 2333 343333 47887664 58999
Q ss_pred EEcccC
Q 010115 384 LSIEKN 389 (518)
Q Consensus 384 yd~~~~ 389 (518)
||..+.
T Consensus 330 ~D~~t~ 335 (361)
T 2oiz_A 330 YDISQP 335 (361)
T ss_dssp EECSSS
T ss_pred EECCCC
Confidence 998887
No 218
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=88.76 E-value=8.7 Score=38.15 Aligned_cols=143 Identities=12% Similarity=0.131 Sum_probs=68.2
Q ss_pred EEEEcCcCCCCCCceeEEEEECCCC---cEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCcccCcEEEEEcCC
Q 010115 159 VLLVGGKTDSGSDRVSVWTFDTETE---CWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS 233 (518)
Q Consensus 159 iyv~GG~~~~~~~~~~v~~yd~~t~---~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t 233 (518)
+++.|+..+ .+..||+.+. .+..............-++++.. ++.+++.|+.+ ..+.+||+.+
T Consensus 196 ~l~s~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d------g~i~i~d~~~ 263 (430)
T 2xyi_A 196 YLLSASDDH------TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD------QKLMIWDTRN 263 (430)
T ss_dssp EEEEECTTS------CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETT------SEEEEEETTC
T ss_pred eEEEEeCCC------eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCC------CeEEEEECCC
Confidence 677776643 5788888772 22211000001111122233332 45677776654 3488899876
Q ss_pred Cc----EEEeecCCCCCCCCCCcEEEEEC-CcEEEEEcCCCCCCCCCcEEEEEcCCCe--EEEeecCCCCCCCCcceEEE
Q 010115 234 LT----WLPLHCTGTGPSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGV 306 (518)
Q Consensus 234 ~~----W~~~~~~g~~p~~r~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~v~~~~~~p~~r~~~~~~ 306 (518)
.. -..+. . ....-.+++... +..+++.|+.++ .|..||+.+.. -..+... ......+
T Consensus 264 ~~~~~~~~~~~---~--~~~~v~~i~~~p~~~~~l~tg~~dg-----~v~vwd~~~~~~~~~~~~~h------~~~v~~i 327 (430)
T 2xyi_A 264 NNTSKPSHTVD---A--HTAEVNCLSFNPYSEFILATGSADK-----TVALWDLRNLKLKLHSFESH------KDEIFQV 327 (430)
T ss_dssp SCSSSCSEEEE---C--CSSCEEEEEECSSCTTEEEEEETTS-----EEEEEETTCTTSCSEEEECC------SSCEEEE
T ss_pred CCCCcceeEee---c--CCCCeEEEEeCCCCCCEEEEEeCCC-----eEEEEeCCCCCCCeEEeecC------CCCEEEE
Confidence 42 11111 0 011111223332 333677777654 58899987521 1122111 1111222
Q ss_pred EE---CCEEEEEcccCCCCCcCeEEEEECCC
Q 010115 307 LC---GTKWYIAGGGSRKKRHAETLIFDILK 334 (518)
Q Consensus 307 ~~---~~~iyv~GG~~~~~~~~~v~~yd~~~ 334 (518)
.+ +..+++.|+.++. +.+||+..
T Consensus 328 ~~sp~~~~~l~s~~~d~~-----i~iwd~~~ 353 (430)
T 2xyi_A 328 QWSPHNETILASSGTDRR-----LHVWDLSK 353 (430)
T ss_dssp EECSSCTTEEEEEETTSC-----CEEEEGGG
T ss_pred EECCCCCCEEEEEeCCCc-----EEEEeCCC
Confidence 33 3357888876543 77888765
No 219
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=88.55 E-value=20 Score=35.33 Aligned_cols=198 Identities=17% Similarity=0.243 Sum_probs=108.8
Q ss_pred CCCCCeEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCCcEEEE-EcC------CCcEEEcccccccCCCCCCCC
Q 010115 71 GNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVL-NFD------RFSWTAASSKLYLSPSSLPLK 143 (518)
Q Consensus 71 ~~~~~W~~l~~~~~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~y-d~~------~~~W~~~~~~~~~~~~~~~~~ 143 (518)
.....|+.-.. +..|..-.-|+.+.+++.=|.+|=..+.-....+=.+ -+. ...=++++.. -
T Consensus 267 F~~spW~~t~L-~~i~~vTe~HSFa~i~~~~fa~GyHnGDv~PRe~G~~yfs~~~~sp~~~vrr~i~se----------y 335 (670)
T 3ju4_A 267 FHKSPWRKTDL-GLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSE----------Y 335 (670)
T ss_dssp STTSCCEEEEC-CSCTTCSEEEEEEECSSSCEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECCGG----------G
T ss_pred eccCCceeccc-ccccceeeeeeeeEecCCceEEEeccCCCCcceeeEEEecccccCCcceeeeechhh----------h
Confidence 35567866543 2455556778999998888888744333333333222 111 1122333331 1
Q ss_pred CCCccceEEEEECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcc--eEEEEECCEEEEEcccCCCC-
Q 010115 144 IPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSG--HTVVRASSVLILFGGEDGKR- 220 (518)
Q Consensus 144 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~--~~~~~~~~~iyv~GG~~~~~- 220 (518)
.+.....++-..++.||+.--.......-+.+.+-+.....|+.+.. |..... .-.+..++.||+||-....+
T Consensus 336 ~~~AsEPCvkyYdgvLyLtTRgt~~~~~GS~L~rs~d~Gq~w~slrf----p~nvHhtnlPFakvgD~l~mFgsERA~nE 411 (670)
T 3ju4_A 336 EPDASEPCIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRF----PHNVHHTTLPFAKVGDDLIMFGSERAENE 411 (670)
T ss_dssp CTTEEEEEEEEETTEEEEEEEESCTTSCCCEEEEESSTTSSCEEEEC----TTCCCSSCCCEEEETTEEEEEEECSSTTC
T ss_pred ccccccchhhhhCCEEEEEecCcCCCCCcceeeeecccCCchhheec----cccccccCCCcceeCCEEEEEeccccccc
Confidence 12223456667799999985444333445578888888899999873 432222 22466899999998763211
Q ss_pred --------cc---cCcEEEEEc-------CCCcEEEeec---CCCCCCCCCCcEEEEECCc-EEEEEcCCCC--------
Q 010115 221 --------RK---LNDLHMFDL-------KSLTWLPLHC---TGTGPSPRSNHVAALYDDK-NLLIFGGSSK-------- 270 (518)
Q Consensus 221 --------~~---~~~~~~yd~-------~t~~W~~~~~---~g~~p~~r~~~~~~~~~~~-~lyv~GG~~~-------- 270 (518)
++ ...+++... +.-+|..+.. .|..-..-.+...+++.+. ..|+|||.+.
T Consensus 412 WE~G~pD~RY~a~yPRtF~~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD~~lyyiFGgEd~~np~s~gd 491 (670)
T 3ju4_A 412 WEAGAPDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGEDHFNPWTYGD 491 (670)
T ss_dssp SSTTCCCCCSSCBCCEEEEEEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEETTEEEEEEEEBCSCCCCTTTT
T ss_pred cccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEeCCEEEEEecCcccCCcccccc
Confidence 11 122333222 3345666643 2333333333344445444 6688998642
Q ss_pred ---------CCCCCcEEEEEcC
Q 010115 271 ---------SKTLNDLYSLDFE 283 (518)
Q Consensus 271 ---------~~~~~~v~~yd~~ 283 (518)
.....++|+|.++
T Consensus 492 N~~k~~~~~~Ghp~dlY~~ri~ 513 (670)
T 3ju4_A 492 NSAKDPFKSDGHPSDLYCYKMK 513 (670)
T ss_dssp TTTCCTTSTTCCCCEEEEEEEE
T ss_pred ccccCccccCCCCcceEEEEEE
Confidence 1235678888753
No 220
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=88.37 E-value=17 Score=34.24 Aligned_cols=143 Identities=12% Similarity=0.099 Sum_probs=72.1
Q ss_pred CEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCC-CCCcceEEEEE-CCEEEEEcccCCCCcccCcEEEEEcCCC
Q 010115 157 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIP-VARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (518)
Q Consensus 157 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p-~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~ 234 (518)
+.+++.|+.+. .+..||..+........ +. ....-.+++.. ++..++.|+.++ .+.+||+.+.
T Consensus 54 g~~l~~~~~dg------~i~iw~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~~~dg------~v~iwd~~~~ 118 (368)
T 3mmy_A 54 GNFLIAGSWAN------DVRCWEVQDSGQTIPKA---QQMHTGPVLDVCWSDDGSKVFTASCDK------TAKMWDLSSN 118 (368)
T ss_dssp SEEEEEEETTS------EEEEEEECTTSCEEEEE---EEECSSCEEEEEECTTSSEEEEEETTS------EEEEEETTTT
T ss_pred ceEEEEECCCC------cEEEEEcCCCCceeEEE---eccccCCEEEEEECcCCCEEEEEcCCC------cEEEEEcCCC
Confidence 37888877653 57778877633222111 11 11111222222 456666666543 4888999888
Q ss_pred cEEEeecCCCCCCCCCCcEEEE--ECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEE
Q 010115 235 TWLPLHCTGTGPSPRSNHVAAL--YDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKW 312 (518)
Q Consensus 235 ~W~~~~~~g~~p~~r~~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~i 312 (518)
+...... . ...-.+++. ..+..+++.|+.++ .+..||+.+.+-...-.. + ....+.....+.+
T Consensus 119 ~~~~~~~---~--~~~v~~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~---~--~~~~~~~~~~~~~ 183 (368)
T 3mmy_A 119 QAIQIAQ---H--DAPVKTIHWIKAPNYSCVMTGSWDK-----TLKFWDTRSSNPMMVLQL---P--ERCYCADVIYPMA 183 (368)
T ss_dssp EEEEEEE---C--SSCEEEEEEEECSSCEEEEEEETTS-----EEEEECSSCSSCSEEEEC---S--SCEEEEEEETTEE
T ss_pred Cceeecc---c--cCceEEEEEEeCCCCCEEEEccCCC-----cEEEEECCCCcEEEEEec---C--CCceEEEecCCee
Confidence 7665531 1 111222333 34444677776554 588999876542222111 1 1222333345554
Q ss_pred EEEcccCCCCCcCeEEEEECCCC
Q 010115 313 YIAGGGSRKKRHAETLIFDILKG 335 (518)
Q Consensus 313 yv~GG~~~~~~~~~v~~yd~~~~ 335 (518)
++.++ . ..+.+||+...
T Consensus 184 ~~~~~-~-----~~i~~~~~~~~ 200 (368)
T 3mmy_A 184 VVATA-E-----RGLIVYQLENQ 200 (368)
T ss_dssp EEEEG-G-----GCEEEEECSSS
T ss_pred EEEeC-C-----CcEEEEEeccc
Confidence 44433 2 23778887664
No 221
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=88.27 E-value=31 Score=37.15 Aligned_cols=190 Identities=8% Similarity=0.031 Sum_probs=102.9
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCCCceeEEE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWT 177 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 177 (518)
++.|||-.. +.+++||+.++++..... ..+. .-.+++..++.|+|... ..+++
T Consensus 73 ~g~lWigT~-------~Gl~~yd~~~~~f~~~~~-----------~~~~-~i~~i~~~~g~lWigt~--------~Gl~~ 125 (758)
T 3ott_A 73 NTYLYMGTD-------NGILVYNYRADRYEQPET-----------DFPT-DVRTMALQGDTLWLGAL--------NGLYT 125 (758)
T ss_dssp TTEEEEEET-------TEEEEEETTTTEECCCSC-----------CCCS-CEEEEEEETTEEEEEET--------TEEEE
T ss_pred CCcEEEEeC-------CCeEEEeCCCCEEECccc-----------CCCc-eEEEEEecCCcEEEEcC--------Cccee
Confidence 467877432 357899999887754111 0111 11234445788887422 14899
Q ss_pred EECCCCcEEEeeec-CCCCCCCcceEEEEE-CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCC-CCCCCcEE
Q 010115 178 FDTETECWSVVEAK-GDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGP-SPRSNHVA 254 (518)
Q Consensus 178 yd~~t~~W~~~~~~-~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p-~~r~~~~~ 254 (518)
||+.+++++..... ..++.... .+++.. ++.||+.- . +.+++||+.+.+++......... ....-.++
T Consensus 126 ~~~~~~~~~~~~~~~~~l~~~~i-~~i~~d~~g~lWigt--~------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 196 (758)
T 3ott_A 126 YQLQSRKLTSFDTRRNGLPNNTI-YSIIRTKDNQIYVGT--Y------NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSL 196 (758)
T ss_dssp EETTTCCEEEECHHHHCCSCSCE-EEEEECTTCCEEEEE--T------TEEEEEETTTTEEEEECCCCCTTCSSCCEEEE
T ss_pred EeCCCCeEEEeccCCCCcCCCeE-EEEEEcCCCCEEEEe--C------CCHhhCccCCCceEEecCCCccccccceeEEE
Confidence 99999988876321 11232211 223333 57888831 1 34889999998887664211100 01111222
Q ss_pred EEEC-CcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCCCcCeEEEEEC
Q 010115 255 ALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDI 332 (518)
Q Consensus 255 ~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~ 332 (518)
.... +..|+|.- . ..+++||+.+.+++..... +. ..-.+.+.. ++.|+|.- . .-+++||+
T Consensus 197 ~~d~~~~~lWigt-~------~Gl~~~~~~~~~~~~~~~l---~~-~~i~~i~~d~~g~lWigT--~-----~Gl~~~~~ 258 (758)
T 3ott_A 197 LEDTTRQCVWIGT-E------GYLFQYFPSTGQIKQTEAF---HN-NSIKSLALDGNGDLLAGT--D-----NGLYVYHN 258 (758)
T ss_dssp EEETTTTEEEEEE-E------EEEEEEETTTTEEEEEEEE---EE-EEEEEEEECTTCCEEEEE--T-----TEEEEECC
T ss_pred EEECCCCEEEEEE-C------CCCeEEcCCCCeEEeccCC---CC-CeEEEEEEcCCCCEEEEe--C-----CceeEEec
Confidence 2332 34356631 1 2489999999888766432 11 111222222 56777643 1 23888999
Q ss_pred CCCceEEee
Q 010115 333 LKGEWSVAI 341 (518)
Q Consensus 333 ~~~~W~~~~ 341 (518)
.+..++.+.
T Consensus 259 ~~~~~~~~~ 267 (758)
T 3ott_A 259 DTTPLQHII 267 (758)
T ss_dssp TTSCCEEEC
T ss_pred CCCcEEEEE
Confidence 888887654
No 222
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=88.06 E-value=21 Score=34.92 Aligned_cols=71 Identities=11% Similarity=0.049 Sum_probs=40.2
Q ss_pred CCEEEEEcccCC----CCCcCeEEEEECCCCce-EEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEE
Q 010115 309 GTKWYIAGGGSR----KKRHAETLIFDILKGEW-SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEV 383 (518)
Q Consensus 309 ~~~iyv~GG~~~----~~~~~~v~~yd~~~~~W-~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~ 383 (518)
++++|+...... ....++++++|+.+.+- ..++. ....+++. +..+++..+|+..+. .+.|.+
T Consensus 278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-------g~~p~~i~-~s~Dg~~~l~v~~~~----~~~V~V 345 (373)
T 2mad_H 278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-------GHDVDAIS-VAQDGGPDLYALSAG----TEVLHI 345 (373)
T ss_pred CCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-------CCCcCeEE-ECCCCCeEEEEEcCC----CCeEEE
Confidence 578999754211 12346899999988765 33321 11223333 333333356665432 248999
Q ss_pred EEcccCCc
Q 010115 384 LSIEKNES 391 (518)
Q Consensus 384 yd~~~~~w 391 (518)
+|..+.+-
T Consensus 346 iD~~t~~v 353 (373)
T 2mad_H 346 YDAGAGDQ 353 (373)
T ss_pred EECCCCCE
Confidence 99988763
No 223
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=87.88 E-value=14 Score=32.68 Aligned_cols=153 Identities=16% Similarity=0.195 Sum_probs=81.1
Q ss_pred EEEEECCEEEEEcCcCCCCCCCcEEEEEcCCC--cEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCCC
Q 010115 93 AAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDS 168 (518)
Q Consensus 93 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~ 168 (518)
+++.+++++|+|=| +.+|+++.... ......... . . ..+|... -++... ++++|+|-|.
T Consensus 11 Ai~~~~g~~yfFkg-------~~~Wr~~~~~~~~~~~p~~Is~-~----w-~glP~~I-DAa~~~~~~~~~yfFkG~--- 73 (195)
T 1itv_A 11 AIAEIGNQLYLFKD-------GKYWRFSEGRGSRPQGPFLIAD-K----W-PALPRKL-DSVFEEPLSKKLFFFSGR--- 73 (195)
T ss_dssp EEEEETTEEEEEET-------TEEEEECCSSSCCCEEEEEHHH-H----C-TTSCSSC-SEEEECTTTCCEEEEETT---
T ss_pred EEEEeCCEEEEEEC-------CEEEEEECCccccCCCcEEhhh-c----c-CCCCCCc-cEEEEECCCCeEEEEeCC---
Confidence 44567999999987 45677776542 222111100 0 0 0122222 233333 6889999774
Q ss_pred CCCceeEEEEECCCCcE-EEeeecCCCCCC--CcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEE-----ee
Q 010115 169 GSDRVSVWTFDTETECW-SVVEAKGDIPVA--RSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP-----LH 240 (518)
Q Consensus 169 ~~~~~~v~~yd~~t~~W-~~~~~~~~~p~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~-----~~ 240 (518)
.+|+|+..+..- +.+..- .+|.. ....+....++++|+|-| +..|+||..+++-.. +.
T Consensus 74 -----~yw~~~~~~~~~Pk~i~~~-G~p~~~~~iDAA~~~~~g~~yfFkg--------~~ywr~d~~~~~~~~gyPr~i~ 139 (195)
T 1itv_A 74 -----QVWVYTGASVLGPRRLDKL-GLGADVAQVTGALRSGRGKMLLFSG--------RRLWRFDVKAQMVDPRSASEVD 139 (195)
T ss_dssp -----EEEEEETTEEEEEEEGGGG-TCCTTCCCCCEEEECSTTEEEEEET--------TEEEEEETTTTEECGGGCEEHH
T ss_pred -----EEEEEcCCccCCCEEeeec-ccCCCccceeEEEEcCCCeEEEEeC--------CEEEEEeCCcccccCCCccChh
Confidence 589998653221 011110 23432 344344434689999955 357999987654211 11
Q ss_pred -cCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCe
Q 010115 241 -CTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI 286 (518)
Q Consensus 241 -~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 286 (518)
.-..+|. .-.++...++. +|+|-|. ..|+||..+..
T Consensus 140 ~~w~Gvp~--~idaa~~~~g~-~Yffkg~-------~y~~~~~~~~~ 176 (195)
T 1itv_A 140 RMFPGVPL--DTHDVFQFREK-AYFCQDR-------FYWRVSSRSEL 176 (195)
T ss_dssp HHSTTSCS--SCSEEEEETTE-EEEEETT-------EEEEEECCTTC
T ss_pred hcCCCCCC--CCCEEEEeCCe-EEEEeCC-------EEEEEECCccE
Confidence 0012222 23344455655 8998763 68999987664
No 224
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=87.31 E-value=20 Score=33.97 Aligned_cols=145 Identities=10% Similarity=0.019 Sum_probs=77.5
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEE-EECCEEEEEcccCCCCcccCcEEEEEcCCC
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVV-RASSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~ 234 (518)
++.+|+++... ..+++||+.+++.+... .+. . -.+++ .-++++|+... ..+++||+.+.
T Consensus 60 ~~~l~~~d~~~------~~i~~~d~~~~~~~~~~----~~~-~-v~~i~~~~dg~l~v~~~--------~gl~~~d~~~g 119 (326)
T 2ghs_A 60 SGTAWWFNILE------RELHELHLASGRKTVHA----LPF-M-GSALAKISDSKQLIASD--------DGLFLRDTATG 119 (326)
T ss_dssp TTEEEEEEGGG------TEEEEEETTTTEEEEEE----CSS-C-EEEEEEEETTEEEEEET--------TEEEEEETTTC
T ss_pred CCEEEEEECCC------CEEEEEECCCCcEEEEE----CCC-c-ceEEEEeCCCeEEEEEC--------CCEEEEECCCC
Confidence 36888886542 26999999988766543 222 1 12233 34678887531 24999999999
Q ss_pred cEEEeecCCC-CCCCCCCcEEEEECCcEEEEEcC-CCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CC-
Q 010115 235 TWLPLHCTGT-GPSPRSNHVAALYDDKNLLIFGG-SSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GT- 310 (518)
Q Consensus 235 ~W~~~~~~g~-~p~~r~~~~~~~~~~~~lyv~GG-~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~- 310 (518)
+.+.+..... .+..+.. ..++..+..+|+... .........++++| +.+.+.+... .. ...+.+.. ++
T Consensus 120 ~~~~~~~~~~~~~~~~~~-~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~----~~-~~~~i~~s~dg~ 191 (326)
T 2ghs_A 120 VLTLHAELESDLPGNRSN-DGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFAD----IS-IPNSICFSPDGT 191 (326)
T ss_dssp CEEEEECSSTTCTTEEEE-EEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEE----ES-SEEEEEECTTSC
T ss_pred cEEEEeeCCCCCCCCCCC-CEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCC----Cc-ccCCeEEcCCCC
Confidence 8887752111 1111211 233333333666321 11112345799999 4666555321 01 11122332 34
Q ss_pred EEEEEcccCCCCCcCeEEEEECC
Q 010115 311 KWYIAGGGSRKKRHAETLIFDIL 333 (518)
Q Consensus 311 ~iyv~GG~~~~~~~~~v~~yd~~ 333 (518)
.+|+.... ...+++||+.
T Consensus 192 ~lyv~~~~-----~~~I~~~d~~ 209 (326)
T 2ghs_A 192 TGYFVDTK-----VNRLMRVPLD 209 (326)
T ss_dssp EEEEEETT-----TCEEEEEEBC
T ss_pred EEEEEECC-----CCEEEEEEcc
Confidence 67776432 2468999975
No 225
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=87.06 E-value=17 Score=34.33 Aligned_cols=107 Identities=11% Similarity=0.053 Sum_probs=57.5
Q ss_pred CEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEE--CCcEEEEEcCCCCCCCCCcEEEEEcCCC
Q 010115 208 SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY--DDKNLLIFGGSSKSKTLNDLYSLDFETM 285 (518)
Q Consensus 208 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~ 285 (518)
+.+++.|+.++ .+.+||+.+.+-...- .. ....-.+++.. ++. +++.|+.++ .+..||+.+.
T Consensus 85 ~~~l~~~~~dg------~i~v~d~~~~~~~~~~---~~-~~~~i~~~~~~~~~~~-~l~s~~~dg-----~i~iwd~~~~ 148 (366)
T 3k26_A 85 HPLLAVAGSRG------IIRIINPITMQCIKHY---VG-HGNAINELKFHPRDPN-LLLSVSKDH-----ALRLWNIQTD 148 (366)
T ss_dssp CEEEEEEETTC------EEEEECTTTCCEEEEE---ES-CCSCEEEEEECSSCTT-EEEEEETTS-----CEEEEETTTT
T ss_pred CCEEEEecCCC------EEEEEEchhceEeeee---cC-CCCcEEEEEECCCCCC-EEEEEeCCC-----eEEEEEeecC
Confidence 56777777653 4888888766543321 10 11112233333 345 677777654 4999999877
Q ss_pred eEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCCCcCeEEEEECCCCc
Q 010115 286 IWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGE 336 (518)
Q Consensus 286 ~W~~v~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 336 (518)
+-...-.. .......-.+++.. ++..++.|+.++ .+.+||+.+.+
T Consensus 149 ~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~ 194 (366)
T 3k26_A 149 TLVAIFGG-VEGHRDEVLSADYDLLGEKIMSCGMDH-----SLKLWRINSKR 194 (366)
T ss_dssp EEEEEECS-TTSCSSCEEEEEECTTSSEEEEEETTS-----CEEEEESCSHH
T ss_pred eEEEEecc-cccccCceeEEEECCCCCEEEEecCCC-----CEEEEECCCCc
Confidence 64443210 00111112222222 566777777654 38899987653
No 226
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=87.00 E-value=27 Score=35.02 Aligned_cols=89 Identities=12% Similarity=0.149 Sum_probs=47.9
Q ss_pred CCEEEEEcccCC----CCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEE
Q 010115 309 GTKWYIAGGGSR----KKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVL 384 (518)
Q Consensus 309 ~~~iyv~GG~~~----~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~y 384 (518)
++++|+.-.... ....+++.++|..+.+-..-- + ......++ .+..+++..+|+.-.. .+.|.++
T Consensus 330 g~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I--~----vg~~P~gi-a~spDg~~~lyv~n~~----s~~VsVI 398 (426)
T 3c75_H 330 SDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKI--E----LGHEIDSI-NVSQDAEPLLYALSAG----TQTLHIY 398 (426)
T ss_dssp GTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE--E----EEEEECEE-EECCSSSCEEEEEETT----TTEEEEE
T ss_pred CCEEEEEecccccccccCCCCEEEEEECCCCeEEEEE--E----CCCCcCeE-EEccCCCEEEEEEcCC----CCeEEEE
Confidence 578999743211 123568999999886543311 1 11112233 3333333377776643 3489999
Q ss_pred EcccCCccccccCCCCCCCCceEeec
Q 010115 385 SIEKNESSMGRRSTPNAKGPGQLLFE 410 (518)
Q Consensus 385 d~~~~~w~~~~~~~~~~~~~~~~vfg 410 (518)
|..+.+-.... ...+..|..+++.
T Consensus 399 D~~t~kvv~tI--~~vG~~P~~i~~~ 422 (426)
T 3c75_H 399 DAATGEELRSV--DQLGRGPQIITTH 422 (426)
T ss_dssp ETTTCCEEEEE--CCCSSSCCEEECC
T ss_pred ECCCCCEEEEe--cCCCCCCcEEEcC
Confidence 99887643321 1334555555443
No 227
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=86.97 E-value=30 Score=35.51 Aligned_cols=143 Identities=10% Similarity=0.117 Sum_probs=73.7
Q ss_pred CEEEEEcCc-CCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCcccCcEEEEEcCC
Q 010115 157 KKVLLVGGK-TDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS 233 (518)
Q Consensus 157 ~~iyv~GG~-~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t 233 (518)
++.++.|+. .. .+..||..+.+... .. +......-..+.+ ++.+++.|+.++ .+.+||+.+
T Consensus 456 ~~~l~~~~~~d~------~i~~~~~~~~~~~~-~~---~~~~~~~v~~~~~s~~g~~l~~~~~dg------~i~iw~~~~ 519 (615)
T 1pgu_A 456 QNYVAVGLEEGN------TIQVFKLSDLEVSF-DL---KTPLRAKPSYISISPSETYIAAGDVMG------KILLYDLQS 519 (615)
T ss_dssp SSEEEEEETTTS------CEEEEETTEEEEEE-EC---SSCCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTT
T ss_pred CCEEEEeecCCC------eEEEEECCCccccc-cc---cCCccCceEEEEECCCCCEEEEcCCCC------eEEEeeCCC
Confidence 555666654 32 58889998876543 21 2222222222222 567777777654 388999977
Q ss_pred CcEEEeecCCCCCCCCCCcEEEEE-----------CCcEEEEEcCCCCCCCCCcEEEEEcCCCe--EEEeecCCCCCCCC
Q 010115 234 LTWLPLHCTGTGPSPRSNHVAALY-----------DDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPR 300 (518)
Q Consensus 234 ~~W~~~~~~g~~p~~r~~~~~~~~-----------~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~v~~~~~~p~~r 300 (518)
.+-...- .......-.+++.. +++ +++.|+.++ .+..||+++.. ...+.. ....
T Consensus 520 ~~~~~~~---~~~h~~~v~~~~~sp~~~~~~~~~~~~~-~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~----h~~~ 586 (615)
T 1pgu_A 520 REVKTSR---WAFRTSKINAISWKPAEKGANEEEIEED-LVATGSLDT-----NIFIYSVKRPMKIIKALNA----HKDG 586 (615)
T ss_dssp TEEEECC---SCCCSSCEEEEEECCCC------CCSCC-EEEEEETTS-----CEEEEESSCTTCCEEETTS----STTC
T ss_pred CcceeEe---ecCCCCceeEEEEcCccccccccccCCC-EEEEEcCCC-----cEEEEECCCCceechhhhc----Cccc
Confidence 6543321 11012222233333 345 777776654 59999988752 222211 1111
Q ss_pred cceEEEEECCEEEEEcccCCCCCcCeEEEEECCC
Q 010115 301 AGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILK 334 (518)
Q Consensus 301 ~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~ 334 (518)
....+..-+++ ++.+|.++. +.++|+++
T Consensus 587 v~~l~~s~~~~-l~s~~~d~~-----v~iw~~~~ 614 (615)
T 1pgu_A 587 VNNLLWETPST-LVSSGADAC-----IKRWNVVL 614 (615)
T ss_dssp EEEEEEEETTE-EEEEETTSC-----EEEEEEC-
T ss_pred eEEEEEcCCCC-eEEecCCce-----EEEEeeec
Confidence 11122223778 777776543 66776653
No 228
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=86.92 E-value=21 Score=33.78 Aligned_cols=208 Identities=10% Similarity=0.025 Sum_probs=103.8
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCC--cEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCce
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRV 173 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~ 173 (518)
++.||+..... ..+.+||+... .-..+........ .......-..++.. ++.||+..++. ..
T Consensus 101 ~g~l~v~d~~~-----~~v~~~~~~g~~~~~~~~~~~~~~g~----~~~~~~~P~~ia~~~~~g~lyv~d~~~-----~~ 166 (329)
T 3fvz_A 101 DGNYWVTDVAL-----HQVFKLDPHSKEGPLLILGRSMQPGS----DQNHFCQPTDVAVEPSTGAVFVSDGYC-----NS 166 (329)
T ss_dssp TSCEEEEETTT-----TEEEEECTTCSSCCSEEESBTTBCCC----STTCCSSEEEEEECTTTCCEEEEECSS-----CC
T ss_pred CCCEEEEECCC-----CEEEEEeCCCCeEEEEEecccCCCCC----CccccCCCcEEEEeCCCCeEEEEeCCC-----CC
Confidence 46688876532 46888988765 2222221100000 00001112344444 58899997531 13
Q ss_pred eEEEEECCCCcEEEeeecCCC----CCC-CcceEEEEE-C-CEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCC
Q 010115 174 SVWTFDTETECWSVVEAKGDI----PVA-RSGHTVVRA-S-SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGP 246 (518)
Q Consensus 174 ~v~~yd~~t~~W~~~~~~~~~----p~~-r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p 246 (518)
.|.+||+....-..+...+.- +.. ..-+.+++. + +.||+.... .+.+.+||+.+.+....-. ...
T Consensus 167 ~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~------~~~I~~~~~~~G~~~~~~~--~~~ 238 (329)
T 3fvz_A 167 RIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE------NGRIQCFKTDTKEFVREIK--HAS 238 (329)
T ss_dssp EEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT------TTEEEEEETTTCCEEEEEC--CTT
T ss_pred eEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC------CCEEEEEECCCCcEEEEEe--ccc
Confidence 689999655544444322211 111 112344443 3 799998543 2468999998666654321 111
Q ss_pred CCCCCcEEEEECCcEEEEEcCCCC--CCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCCC
Q 010115 247 SPRSNHVAALYDDKNLLIFGGSSK--SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKR 323 (518)
Q Consensus 247 ~~r~~~~~~~~~~~~lyv~GG~~~--~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~ 323 (518)
....-.+.+... ..+|...|... ......+..+|+.+.+....-.... .....-.+.++. ++.|||....+.
T Consensus 239 ~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~-~~~~~p~~ia~~~dG~lyvad~~~~--- 313 (329)
T 3fvz_A 239 FGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVR-KHFDMPHDIVASEDGTVYIGDAHTN--- 313 (329)
T ss_dssp TTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSS-SCCSSEEEEEECTTSEEEEEESSSC---
T ss_pred cCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCC-CccCCeeEEEECCCCCEEEEECCCC---
Confidence 111122334444 44666666421 2234579999988776555422100 111112233332 568999875443
Q ss_pred cCeEEEEECCC
Q 010115 324 HAETLIFDILK 334 (518)
Q Consensus 324 ~~~v~~yd~~~ 334 (518)
.|++|+++.
T Consensus 314 --~I~~~~~~~ 322 (329)
T 3fvz_A 314 --TVWKFTLTE 322 (329)
T ss_dssp --CEEEEEEEE
T ss_pred --EEEEEeCCc
Confidence 488887643
No 229
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=86.74 E-value=38 Score=36.52 Aligned_cols=267 Identities=16% Similarity=0.194 Sum_probs=137.6
Q ss_pred CCCCeEEeccCCCCCCC-ccceEEEEE---CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCC--
Q 010115 72 NSENWMVLSIAGDKPIP-RFNHAAAVI---GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIP-- 145 (518)
Q Consensus 72 ~~~~W~~l~~~~~~p~~-R~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~-- 145 (518)
...+|+.+.. .... |. +++++. .+.||+.. .. ..+++.+-...+|+.+.... ...
T Consensus 9 ~~~~w~~~~~---~~~~g~i-~~i~~~p~~~~~~~~~~-~~-----ggv~rS~D~G~tW~~i~~~~---------~~~~~ 69 (737)
T 2cn3_A 9 VPYKWDNVVI---GGGGGFM-PGIVFNETEKDLIYARA-AI-----GGAYRWDPSTETWIPLLDHF---------QMDEY 69 (737)
T ss_dssp CCEEEEEECC---CSBCSCC-CEEEECSSSTTCEEEEC-SS-----SCEEEEETTTTEEEECCTTC---------CGGGG
T ss_pred CCCeeEEccc---CCCccee-eEEEECCCCCCEEEEEe-cC-----CcEEEeCCCCCCEEECcCcc---------Ccccc
Confidence 5678999952 1222 33 333333 25577743 11 35899888889999976520 000
Q ss_pred Ccc-ceEEEEE---CCEEEEEcCcCCC-C-CCceeEEEEECCCCcEEEeeecCC----CCCCCcceEEEEE---CCEEEE
Q 010115 146 ACR-GHSLISW---GKKVLLVGGKTDS-G-SDRVSVWTFDTETECWSVVEAKGD----IPVARSGHTVVRA---SSVLIL 212 (518)
Q Consensus 146 ~r~-~~~~~~~---~~~iyv~GG~~~~-~-~~~~~v~~yd~~t~~W~~~~~~~~----~p~~r~~~~~~~~---~~~iyv 212 (518)
... -+++++. .+.||+..|.... . .....+++-.-.-.+|+.+..... +|.....+.+++. .+.||+
T Consensus 70 ~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~ 149 (737)
T 2cn3_A 70 SYYGVESIATDPVDPNRVYIVAGMYTNDWLPNMGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYL 149 (737)
T ss_dssp GGGCEEEEEECSSSTTCEEEEECSCSSSSSCCCCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEE
T ss_pred cCCCcceEEeCCCCCCEEEEEecccccccccCCccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEE
Confidence 011 2333433 2688887653110 1 112346665555678999864111 1211122455553 256766
Q ss_pred EcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCC--------------CCcEEEEEC--C-------cEEEEEcCCC
Q 010115 213 FGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPR--------------SNHVAALYD--D-------KNLLIFGGSS 269 (518)
Q Consensus 213 ~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r--------------~~~~~~~~~--~-------~~lyv~GG~~ 269 (518)
.. ..+ ..+++=+=.-.+|+++. .+|... .+.....++ + ..||+.-...
T Consensus 150 g~-~~g-----~gl~~S~DgG~tW~~~~---~~~~~~~~~~~p~~~~~~~~~g~~~v~~dp~~~~~~~~~~~v~~~~~~~ 220 (737)
T 2cn3_A 150 GT-RCG-----NGLWRSTDYGVTWSKVE---SFPNPGTYIYDPNFDYTKDIIGVVWVVFDKSSSTPGNPTKTIYVGVADK 220 (737)
T ss_dssp EC-STT-----CCEEEESSTTSSCEECT---TCCCCCCCBSCTTSTTTCSBCCEEEEEECGGGSCTTSCCSCEEEEESCS
T ss_pred ee-ccC-----CcEEEeCCCCcceeccc---CCCCCcccccCcccccccCCCCEEEEEcCCCCcccCCCCCEEEEEecCC
Confidence 42 110 23444333346899886 333211 011222332 1 1366642211
Q ss_pred CCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCC----CCCcCeEEEEECCCCceEEeecCC
Q 010115 270 KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSR----KKRHAETLIFDILKGEWSVAITSP 344 (518)
Q Consensus 270 ~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~----~~~~~~v~~yd~~~~~W~~~~~~~ 344 (518)
. ..+++=.-...+|+.+... |.....+.++.. ++.+|+..+... ......+++++....+|+.+...+
T Consensus 221 ~----~~v~~S~DgG~tW~~~~~~---p~~~~~~~~~~~~~~~l~~~~~d~~g~y~~~~~g~v~~s~d~G~tW~~i~~~~ 293 (737)
T 2cn3_A 221 N----ESIYRSTDGGVTWKAVPGQ---PKGLLPHHGVLASNGMLYITYGDTCGPYDGNGKGQVWKFNTRTGEWIDITPIP 293 (737)
T ss_dssp S----CCEEEESSTTSCCEECTTC---CCSSEEEEEEECTTSEEEEEEESSCCSSCCSCCEEEEEEETTTCCEEECCSSC
T ss_pred C----ccEEEEcCCCCceEECCCC---CCcccceEEEECCCCeEEEEecCCCCccccccCceEEEEeCCCCCEEEccCCC
Confidence 1 1355544456789998733 444444444433 778998764321 113457999999999999987533
Q ss_pred CCCCCCCCCceEEEEeeCCccEEEEEcCC
Q 010115 345 SSSVTSNKGFTLVLVQHKEKDFLVAFGGI 373 (518)
Q Consensus 345 ~~~~~~r~~~s~~~~~~~~~~~l~v~GG~ 373 (518)
......+.+++.+++...+.+.||+.+..
T Consensus 294 ~~~~~~~~~~~~i~v~p~~~~~ly~~~~~ 322 (737)
T 2cn3_A 294 YSSSDNRFCFAGLAVDRQNPDIIMVTSMN 322 (737)
T ss_dssp TTSTTCCSEEEEEEECTTCTTCEEEEEEC
T ss_pred CCCcccccccccEEEcCCCCCEEEEEecc
Confidence 22112345666666665556778877654
No 230
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=86.71 E-value=20 Score=35.23 Aligned_cols=156 Identities=13% Similarity=0.081 Sum_probs=81.9
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCC-CCCcceEEEEE-CCEEEEEcccCCCCcccCcEEEEEcCC
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIP-VARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKS 233 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p-~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t 233 (518)
++.+++.|+.+. .+..||+.+.+-...-. .+ ....-.+++.. ++.+++.|+.++ .+.+||+.+
T Consensus 181 ~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~---~~~h~~~v~~~~~s~~~~~l~s~~~dg------~i~iwd~~~ 245 (437)
T 3gre_A 181 EKSLLVALTNLS------RVIIFDIRTLERLQIIE---NSPRHGAVSSICIDEECCVLILGTTRG------IIDIWDIRF 245 (437)
T ss_dssp SCEEEEEEETTS------EEEEEETTTCCEEEEEE---CCGGGCCEEEEEECTTSCEEEEEETTS------CEEEEETTT
T ss_pred CCCEEEEEeCCC------eEEEEeCCCCeeeEEEc---cCCCCCceEEEEECCCCCEEEEEcCCC------eEEEEEcCC
Confidence 467777777643 68899998876433222 11 11122222222 467777777654 488999987
Q ss_pred CcEEEeecCCCCCCCCCCcEEEEE----CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCC--C------C----
Q 010115 234 LTWLPLHCTGTGPSPRSNHVAALY----DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGF--H------P---- 297 (518)
Q Consensus 234 ~~W~~~~~~g~~p~~r~~~~~~~~----~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~--~------p---- 297 (518)
.+....- ..+....-.+++.. .+..+++.|+.++ .+..||+.+.+-...-.... . |
T Consensus 246 ~~~~~~~---~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (437)
T 3gre_A 246 NVLIRSW---SFGDHAPITHVEVCQFYGKNSVIVVGGSSKT-----FLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKG 317 (437)
T ss_dssp TEEEEEE---BCTTCEEEEEEEECTTTCTTEEEEEEESTTE-----EEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSS
T ss_pred ccEEEEE---ecCCCCceEEEEeccccCCCccEEEEEcCCC-----cEEEEEcCCCcEEEEEEcCCCCCccceecccccc
Confidence 6654321 11111111111111 2343566665543 58899987665332211000 0 1
Q ss_pred ----------CCCcceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEE
Q 010115 298 ----------SPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSV 339 (518)
Q Consensus 298 ----------~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 339 (518)
....-.+++..++++++.||.++ .+.+||+.+.+-..
T Consensus 318 l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~-----~i~~wd~~~~~~~~ 364 (437)
T 3gre_A 318 LEELNFCGIRSLNALSTISVSNDKILLTDEATS-----SIVMFSLNELSSSK 364 (437)
T ss_dssp GGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGT-----EEEEEETTCGGGCE
T ss_pred cccceecccccCCceEEEEECCceEEEecCCCC-----eEEEEECCCcccce
Confidence 11112233444788888888664 48899988766433
No 231
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=86.61 E-value=33 Score=35.73 Aligned_cols=235 Identities=12% Similarity=0.113 Sum_probs=118.1
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEE-cccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcee
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTA-ASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVS 174 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 174 (518)
++.+||.... .+.+.++|+.+.+-.. ++. ...-|.++.. +..+|+.+. ...
T Consensus 166 ~~~~~V~~~~-----~~~V~viD~~t~~v~~~i~~--------------g~~p~~v~~SpDGr~lyv~~~-------dg~ 219 (567)
T 1qks_A 166 ENLFSVTLRD-----AGQIALIDGSTYEIKTVLDT--------------GYAVHISRLSASGRYLFVIGR-------DGK 219 (567)
T ss_dssp GGEEEEEETT-----TTEEEEEETTTCCEEEEEEC--------------SSCEEEEEECTTSCEEEEEET-------TSE
T ss_pred CceEEEEeCC-----CCeEEEEECCCCeEEEEEeC--------------CCCccceEECCCCCEEEEEcC-------CCe
Confidence 4567776543 3579999998875433 222 1122444433 467887642 136
Q ss_pred EEEEECC--CCcEEEeeecCCCCCCCcceEEEEE-----C-CEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCC--
Q 010115 175 VWTFDTE--TECWSVVEAKGDIPVARSGHTVVRA-----S-SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGT-- 244 (518)
Q Consensus 175 v~~yd~~--t~~W~~~~~~~~~p~~r~~~~~~~~-----~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~-- 244 (518)
|..||+. +.+- +.. ++....-..+++. + ..+|+..- ..+.+.++|..+.+=...-..+.
T Consensus 220 V~viD~~~~t~~~--v~~---i~~G~~P~~ia~s~~~~pDGk~l~v~n~------~~~~v~ViD~~t~~~~~~i~~~~~~ 288 (567)
T 1qks_A 220 VNMIDLWMKEPTT--VAE---IKIGSEARSIETSKMEGWEDKYAIAGAY------WPPQYVIMDGETLEPKKIQSTRGMT 288 (567)
T ss_dssp EEEEETTSSSCCE--EEE---EECCSEEEEEEECCSTTCTTTEEEEEEE------ETTEEEEEETTTCCEEEEEECCEEC
T ss_pred EEEEECCCCCCcE--eEE---EecCCCCceeEEccccCCCCCEEEEEEc------cCCeEEEEECCCCcEEEEEeccccc
Confidence 9999995 5432 221 2222222233333 3 46776632 23567888987765433221111
Q ss_pred ------CCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCE-EEEEc
Q 010115 245 ------GPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK-WYIAG 316 (518)
Q Consensus 245 ------~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~-iyv~G 316 (518)
.|.+|.........+..+++.= ...+.++..|........+... +..+.-|..... +++ +|+..
T Consensus 289 ~~~~~~~p~~rva~i~~s~~~~~~vv~~-----~~~g~v~~vd~~~~~~~~v~~i---~~~~~~~d~~~~pdgr~~~va~ 360 (567)
T 1qks_A 289 YDEQEYHPEPRVAAILASHYRPEFIVNV-----KETGKILLVDYTDLNNLKTTEI---SAERFLHDGGLDGSHRYFITAA 360 (567)
T ss_dssp TTTCCEESCCCEEEEEECSSSSEEEEEE-----TTTTEEEEEETTCSSEEEEEEE---ECCSSEEEEEECTTSCEEEEEE
T ss_pred cccccccCCCceEEEEEcCCCCEEEEEe-----cCCCeEEEEecCCCccceeeee---eccccccCceECCCCCEEEEEe
Confidence 1234443333333334233321 1235788999877655555443 344555555443 444 44443
Q ss_pred ccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEccc
Q 010115 317 GGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (518)
Q Consensus 317 G~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~ 388 (518)
.. .+.+.++|..+++-..........|.+.. .+..+ +.+.+.+|+.+-.+. +.|.++|..+
T Consensus 361 ~~-----sn~V~ViD~~t~kl~~~i~vgg~~Phpg~--g~~~~-~p~~g~v~~t~~~g~---~~Vsvid~~~ 421 (567)
T 1qks_A 361 NA-----RNKLVVIDTKEGKLVAIEDTGGQTPHPGR--GANFV-HPTFGPVWATSHMGD---DSVALIGTDP 421 (567)
T ss_dssp GG-----GTEEEEEETTTTEEEEEEECSSSSBCCTT--CEEEE-ETTTEEEEEEEBSSS---SEEEEEECCT
T ss_pred CC-----CCeEEEEECCCCcEEEEEeccCcCCCCcc--ceeeE-CCCCCcEEEeCCCCC---CeEEEecCCC
Confidence 22 35699999998865443321012233322 22222 333356676653221 2688888776
No 232
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=86.53 E-value=17 Score=32.39 Aligned_cols=154 Identities=14% Similarity=0.111 Sum_probs=77.1
Q ss_pred EEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecC---CCCCCCCCCcEEEEEC-CcEEEEEcCCCCCCCCCcE
Q 010115 202 TVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT---GTGPSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDL 277 (518)
Q Consensus 202 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~---g~~p~~r~~~~~~~~~-~~~lyv~GG~~~~~~~~~v 277 (518)
+++..++.+|+|=| ..+|+++.....+...... ..+|. ... ++.... +..+|+|-| +.+
T Consensus 28 Ai~~~~g~~y~Fkg--------~~~wr~~~~~~~~~p~~I~~~wp~Lp~-~iD-Aa~~~~~~~~iyfFkG-------~~~ 90 (207)
T 1pex_A 28 AITSLRGETMIFKD--------RFFWRLHPQQVDAELFLTKSFWPELPN-RID-AAYEHPSHDLIFIFRG-------RKF 90 (207)
T ss_dssp EEEEETTEEEEEET--------TEEEEECSSSSCCEEEEHHHHCTTSCS-SCC-EEEEETTTTEEEEEET-------TEE
T ss_pred EEEeCCCcEEEEEC--------CEEEEEeCCCcCCCceehhHhccCCCC-Ccc-EEEEeccCCcEEEEcc-------CEE
Confidence 44557899999954 3467776544333221110 13442 233 233332 334888876 367
Q ss_pred EEEEcCCCeE---EEeecCCCCCCCCcceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCC----C
Q 010115 278 YSLDFETMIW---TRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSS----V 348 (518)
Q Consensus 278 ~~yd~~~~~W---~~v~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~----~ 348 (518)
|+|+-.+..- +.+...|.+..+..--+|+.. ++++|+|-| +..|+||..+++-.. ..|... +
T Consensus 91 w~~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG-------~~ywr~d~~~~~~d~--gyPr~i~~~~~ 161 (207)
T 1pex_A 91 WALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG-------NQVWRYDDTNHIMDK--DYPRLIEEDFP 161 (207)
T ss_dssp EEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET-------TEEEEEETTTTEECS--SCCCBHHHHST
T ss_pred EEEeCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeC-------CEEEEEeCcCccccC--CCCccHHHcCC
Confidence 8886432111 122222222212222344443 479999987 568999987653211 111100 0
Q ss_pred CCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 349 TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 349 ~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
......-++.. . .+.+|.|-|. ..|.||..+.+
T Consensus 162 Gip~~iDaAf~-~--~g~~YfFkg~------~y~rf~~~~~~ 194 (207)
T 1pex_A 162 GIGDKVDAVYE-K--NGYIYFFNGP------IQFEYSIWSNR 194 (207)
T ss_dssp TSCSCCSEEEE-E--TTEEEEEETT------EEEEEETTTTE
T ss_pred CCCCCccEEEE-c--CCcEEEEECC------EEEEEeCCccE
Confidence 00111222222 2 3678888876 68888876654
No 233
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=86.02 E-value=23 Score=33.23 Aligned_cols=243 Identities=9% Similarity=-0.013 Sum_probs=121.0
Q ss_pred CCeEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEE
Q 010115 74 ENWMVLSIAGDKPIPRFNHAAAVI-GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSL 152 (518)
Q Consensus 74 ~~W~~l~~~~~~p~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~ 152 (518)
...+.+. ..|.+..-.+.++. ++.||+.--. ...+++||+.... ..... .+. .-+++
T Consensus 20 ~~~~~~~---~~p~~~~pegia~~~~g~lyv~d~~-----~~~I~~~d~~g~~-~~~~~------------~~~-~p~gi 77 (306)
T 2p4o_A 20 APAKIIT---SFPVNTFLENLASAPDGTIFVTNHE-----VGEIVSITPDGNQ-QIHAT------------VEG-KVSGL 77 (306)
T ss_dssp CCEEEEE---EECTTCCEEEEEECTTSCEEEEETT-----TTEEEEECTTCCE-EEEEE------------CSS-EEEEE
T ss_pred CCceEeE---eCCCCCCcceEEECCCCCEEEEeCC-----CCeEEEECCCCce-EEEEe------------CCC-CceeE
Confidence 3444444 34444445555553 4668887532 2468999987642 22211 111 22444
Q ss_pred EEE-CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEE
Q 010115 153 ISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFD 230 (518)
Q Consensus 153 ~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd 230 (518)
+.. ++++|+...... ...+++||+.+.+.+.+.. .+..+.....+. .++.+|+.-- ....+|++|
T Consensus 78 a~~~dG~l~vad~~~~----~~~v~~~d~~~g~~~~~~~---~~~~~~~~g~~~~~~~~~~v~d~------~~g~i~~~d 144 (306)
T 2p4o_A 78 AFTSNGDLVATGWNAD----SIPVVSLVKSDGTVETLLT---LPDAIFLNGITPLSDTQYLTADS------YRGAIWLID 144 (306)
T ss_dssp EECTTSCEEEEEECTT----SCEEEEEECTTSCEEEEEE---CTTCSCEEEEEESSSSEEEEEET------TTTEEEEEE
T ss_pred EEcCCCcEEEEeccCC----cceEEEEcCCCCeEEEEEe---CCCccccCcccccCCCcEEEEEC------CCCeEEEEe
Confidence 443 567888753211 1258899999988877664 444454444443 3456777521 135799999
Q ss_pred cCCCcEEE--eecCC--CCCCCC-CCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCC-CeE---EEeecCCCCCCCCc
Q 010115 231 LKSLTWLP--LHCTG--TGPSPR-SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET-MIW---TRIKIRGFHPSPRA 301 (518)
Q Consensus 231 ~~t~~W~~--~~~~g--~~p~~r-~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~-~~W---~~v~~~~~~p~~r~ 301 (518)
+.+.+-+. ..... ..+... ........+++.||+.-- ..+.|++|+++. .+. +.+... ..|
T Consensus 145 ~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~-----~~~~I~~~~~~~~g~~~~~~~~~~~---~~P-- 214 (306)
T 2p4o_A 145 VVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNT-----EKMLLLRIPVDSTDKPGEPEIFVEQ---TNI-- 214 (306)
T ss_dssp TTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEET-----TTTEEEEEEBCTTSCBCCCEEEEES---CCC--
T ss_pred CCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeC-----CCCEEEEEEeCCCCCCCccEEEecc---CCC--
Confidence 87642211 11000 011111 111122344555887642 235799999864 221 111111 111
Q ss_pred ceEEEEE-CCEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEee--CCccEEEEEcC
Q 010115 302 GCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQH--KEKDFLVAFGG 372 (518)
Q Consensus 302 ~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~--~~~~~l~v~GG 372 (518)
..+++. +++||+.-... +.|.+||++ .+...+...+ .+...-..+++.. .+.+.|||.-.
T Consensus 215 -~gi~vd~dG~l~va~~~~-----~~V~~~~~~-G~~~~~~~~~----~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 215 -DDFAFDVEGNLYGATHIY-----NSVVRIAPD-RSTTIIAQAE----QGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp -SSEEEBTTCCEEEECBTT-----CCEEEECTT-CCEEEEECGG----GTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred -CCeEECCCCCEEEEeCCC-----CeEEEECCC-CCEEEEeecc----cccCCceEEEEecccCCCCEEEEECC
Confidence 223333 67888875432 459999987 4443332111 1112234444432 34466777544
No 234
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=85.15 E-value=31 Score=34.08 Aligned_cols=201 Identities=14% Similarity=0.106 Sum_probs=106.7
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCceeE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSV 175 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v 175 (518)
++.||+.... ...+.++|+.++.-..+... ....+ ++.. ++.||+...... ..+
T Consensus 141 ~g~lyv~d~~-----~~~I~~id~~~g~~~~~~~~-------------~~~~~-ia~~~~g~~l~~~d~~~~-----~~I 196 (409)
T 3hrp_A 141 NNTVLAYQRD-----DPRVRLISVDDNKVTTVHPG-------------FKGGK-PAVTKDKQRVYSIGWEGT-----HTV 196 (409)
T ss_dssp TTEEEEEETT-----TTEEEEEETTTTEEEEEEET-------------CCBCB-CEECTTSSEEEEEBSSTT-----CEE
T ss_pred CCCEEEEecC-----CCcEEEEECCCCEEEEeecc-------------CCCCc-eeEecCCCcEEEEecCCC-----ceE
Confidence 5778888652 24689999988766655431 01122 2222 456777644321 168
Q ss_pred EEEECCCCc-EEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCC-
Q 010115 176 WTFDTETEC-WSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN- 251 (518)
Q Consensus 176 ~~yd~~t~~-W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~- 251 (518)
+++++.+.. ...+.... .+....-+.+++. ++.||+.-. ...+++||+.+.....+...+........
T Consensus 197 ~~~d~~~~~~~~~~g~~~-~~~~~~p~~iav~p~~g~lyv~d~-------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P 268 (409)
T 3hrp_A 197 YVYMKASGWAPTRIGQLG-STFSGKIGAVALDETEEWLYFVDS-------NKNFGRFNVKTQEVTLIKQLELSGSLGTNP 268 (409)
T ss_dssp EEEEGGGTTCEEEEEECC-TTSCSCCCBCEECTTSSEEEEECT-------TCEEEEEETTTCCEEEEEECCCCSCCCCSS
T ss_pred EEEEcCCCceeEEeeecc-chhcCCcEEEEEeCCCCeEEEEEC-------CCcEEEEECCCCCEEEEecccccCCCCCCc
Confidence 999987654 23331100 1012222344443 578998421 24699999988876555321111122222
Q ss_pred -cEEEEEC-CcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCC--------CCc--ceEEEEE-CCEEEEEcc-
Q 010115 252 -HVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPS--------PRA--GCCGVLC-GTKWYIAGG- 317 (518)
Q Consensus 252 -~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~--------~r~--~~~~~~~-~~~iyv~GG- 317 (518)
..+++.. ++.||+.... .+.|++|+++.. ...+...+..+. .+. -.++++. +++||+...
T Consensus 269 ~~~ia~~p~~g~lyv~d~~-----~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~ 342 (409)
T 3hrp_A 269 GPYLIYYFVDSNFYMSDQN-----LSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGF 342 (409)
T ss_dssp CCEEEEETTTTEEEEEETT-----TTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETT
T ss_pred cccEEEeCCCCEEEEEeCC-----CCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCC
Confidence 1555555 4568887532 346999998765 333322210000 011 1223332 567999854
Q ss_pred cCCCCCcCeEEEEECCCCceEEee
Q 010115 318 GSRKKRHAETLIFDILKGEWSVAI 341 (518)
Q Consensus 318 ~~~~~~~~~v~~yd~~~~~W~~~~ 341 (518)
.. ..|.++|+.+...+.+.
T Consensus 343 ~~-----~~I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 343 KG-----YCLRKLDILDGYVSTVA 361 (409)
T ss_dssp TT-----CEEEEEETTTTEEEEEE
T ss_pred CC-----CEEEEEECCCCEEEEEe
Confidence 32 45899997777766654
No 235
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=84.54 E-value=15 Score=32.49 Aligned_cols=154 Identities=14% Similarity=0.173 Sum_probs=79.0
Q ss_pred EEEEECCEEEEEcCcCCCCCCCcEEEEEcCCC--c-EEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCC
Q 010115 93 AAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--S-WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG 169 (518)
Q Consensus 93 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~-W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~ 169 (518)
+++.+++++|+|-| +.+|+++...- . =..+... . ..+|.....+....++++|+|-|.
T Consensus 10 A~~~~~g~~~fFkg-------~~~w~~~~~~~~~gyP~~I~~~-------w-~glP~~iDAa~~~~~g~~yfFkg~---- 70 (196)
T 3c7x_A 10 TVAMLRGEMFVFKE-------RWFWRVRNNQVMDGYPMPIGQF-------W-RGLPASINTAYERKDGKFVFFKGD---- 70 (196)
T ss_dssp EEEEETTEEEEEET-------TEEEEEETTEECTTCSEEHHHH-------S-TTCCSSCCEEEECTTSCEEEEETT----
T ss_pred EEEEcCCEEEEEEC-------CEEEEEECCccCCCCceEhhHh-------c-cCCCCCccEEEEeCCCcEEEecCC----
Confidence 34467899999988 45777753210 0 0111110 0 012232333222246889999764
Q ss_pred CCceeEEEEECCCCcE---EEeeecC-CCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCCcEEE-----e
Q 010115 170 SDRVSVWTFDTETECW---SVVEAKG-DIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP-----L 239 (518)
Q Consensus 170 ~~~~~v~~yd~~t~~W---~~~~~~~-~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~-----~ 239 (518)
.+|+|+..+... +.+.... .+|......+... .++++|+|-| +..|+||..+++-.. +
T Consensus 71 ----~yw~~~~~~~~~gyPk~I~~~~~glP~~~IDAA~~~~~~g~~yfFkG--------~~yw~yd~~~~~v~~gyPk~i 138 (196)
T 3c7x_A 71 ----KHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRG--------NKYYRFNEELRAVDSEYPKNI 138 (196)
T ss_dssp ----EEEEEETTEECTTCSEEGGGTCBSCCSSCCSEEEEETTTTEEEEEET--------TEEEEEETTTTEECTTCSEEG
T ss_pred ----EEEEEeCCcccCCCCeEhhhcCCCCCCCcccEEEEEccCCEEEEEEC--------CEEEEEeCCcccccCCCCccH
Confidence 589998542110 1121111 2453344433332 2589999955 357899987654321 1
Q ss_pred ecCCCCCCCCCCcEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCe
Q 010115 240 HCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMI 286 (518)
Q Consensus 240 ~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 286 (518)
..-..+| ..-.++... ++..+|+|-| +..|+||..+.+
T Consensus 139 ~~~~gip--~~idaAf~~~~~~~~YfFkg-------~~y~r~d~~~~~ 177 (196)
T 3c7x_A 139 KVWEGIP--ESPRGSFMGSDEVFTYFYKG-------NKYWKFNNQKLK 177 (196)
T ss_dssp GGSBTCC--SSCSEEEECTTSSEEEEEET-------TEEEEEETTTTE
T ss_pred HHCCCcC--CCcceeEEecCCCEEEEEEC-------CEEEEEECCcce
Confidence 1001222 222344444 3325899876 368999987764
No 236
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=83.24 E-value=47 Score=34.58 Aligned_cols=104 Identities=17% Similarity=0.179 Sum_probs=51.4
Q ss_pred EEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCC-CceE
Q 010115 262 LLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILK-GEWS 338 (518)
Q Consensus 262 lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~-~~W~ 338 (518)
+++.|+.++ .+..||..+.....+...+ .... ...+.+ ++++++.|+.+.. +.+||..+ .+-
T Consensus 462 ~lasgs~D~-----~v~lwd~~~~~~~~~~~~~--h~~~--v~~v~fspdg~~las~s~d~~-----v~~w~~~~~~~~- 526 (611)
T 1nr0_A 462 FVAVGGQDS-----KVHVYKLSGASVSEVKTIV--HPAE--ITSVAFSNNGAFLVATDQSRK-----VIPYSVANNFEL- 526 (611)
T ss_dssp EEEEEETTS-----EEEEEEEETTEEEEEEEEE--CSSC--EEEEEECTTSSEEEEEETTSC-----EEEEEGGGTTEE-
T ss_pred EEEEeCCCC-----eEEEEEccCCceeeeeccC--CCCc--eEEEEECCCCCEEEEEcCCCC-----EEEEEcCCCCce-
Confidence 555555433 4778887776654433211 1111 122223 6677777775543 77888765 322
Q ss_pred EeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccC
Q 010115 339 VAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (518)
Q Consensus 339 ~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~ 389 (518)
+.. . ....-......+.+.. ++.+++.|+.++ .|.++|+++.
T Consensus 527 -~~~-~-~~~~H~~~V~~v~fsp--dg~~lasgs~D~----~v~lW~~~~~ 568 (611)
T 1nr0_A 527 -AHT-N-SWTFHTAKVACVSWSP--DNVRLATGSLDN----SVIVWNMNKP 568 (611)
T ss_dssp -SCC-C-CCCCCSSCEEEEEECT--TSSEEEEEETTS----CEEEEETTCT
T ss_pred -eee-e-eeeecccceeEEEECC--CCCEEEEEECCC----cEEEEECCCc
Confidence 110 0 0000111233444442 344677777754 5788887653
No 237
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=83.10 E-value=39 Score=34.11 Aligned_cols=157 Identities=10% Similarity=0.033 Sum_probs=83.9
Q ss_pred eEEEEECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecC---CCCCCCcceEEEE--ECCEEEEEcccCCCCcccC
Q 010115 150 HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG---DIPVARSGHTVVR--ASSVLILFGGEDGKRRKLN 224 (518)
Q Consensus 150 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~---~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~ 224 (518)
-+++..++++|+|-|. .+|+++.....+....... .+|.. .. ++.. .++++|+|=| +
T Consensus 266 DAi~~~~ge~y~Fkg~--------~~wr~~~~~~~~~p~~I~~~Wp~LP~~-iD-Aa~~~~~~g~~~fFKg--------~ 327 (450)
T 1su3_A 266 DAITTIRGEVMFFKDR--------FYMRTNPFYPEVELNFISVFWPQLPNG-LE-AAYEFADRDEVRFFKG--------N 327 (450)
T ss_dssp SEEEEETTEEEEEETT--------EEEECCTTSSSCEEEEGGGTCTTSCSS-CC-EEEEEGGGTEEEEEET--------T
T ss_pred ceEEecCCeEEEEeCC--------EEEEEcCCCCcccceehhHhccCCCCC-ee-EEEEEcCCCeEEEEeC--------C
Confidence 3566689999999775 4788876655444322211 23432 22 2222 2689999954 3
Q ss_pred cEEEEEcCCC--cE-EEee-cCCCCCC--CCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEE-----EeecC
Q 010115 225 DLHMFDLKSL--TW-LPLH-CTGTGPS--PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWT-----RIKIR 293 (518)
Q Consensus 225 ~~~~yd~~t~--~W-~~~~-~~g~~p~--~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~-----~v~~~ 293 (518)
.+|+|+..+. .+ ..+. .. -+|. .....+...-.++.+|+|-| +..|+||..+.+-. .+..
T Consensus 328 ~~W~~~~~~~~~gyP~~i~~~~-g~P~~~~~IDAA~~~~~~~k~yfFkG-------~~yw~yd~~~~~~~~gYPk~I~~- 398 (450)
T 1su3_A 328 KYWAVQGQNVLHGYPKDIYSSF-GFPRTVKHIDAALSEENTGKTYFFVA-------NKYWRYDEYKRSMDPGYPKMIAH- 398 (450)
T ss_dssp EEEEEETTEECTTCSEEHHHHH-CCCTTCCCCCEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCSEEHHH-
T ss_pred EEEEecCCcccCCCceeeehhh-cCCCCCCccceEEEEcCCCeEEEEeC-------CEEEEEeCCCccccCCCCcchhh-
Confidence 4677764210 00 1111 01 1232 22333322223344888876 47999997654321 1110
Q ss_pred CCCCCCCcceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEe
Q 010115 294 GFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 340 (518)
Q Consensus 294 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 340 (518)
.-+..+..-.+|+..++++|+|-| +..|+||..+.+-...
T Consensus 399 ~fpgip~~iDAA~~~~g~~YFFkg-------~~ywr~d~~~~~v~~~ 438 (450)
T 1su3_A 399 DFPGIGHKVDAVFMKDGFFYFFHG-------TRQYKFDPKTKRILTL 438 (450)
T ss_dssp HSTTSCSCCSEEEEETTEEEEEET-------TEEEEEETTTTEEEEE
T ss_pred cCCCCCCCccEEEEcCCeEEEEeC-------CEEEEEECCcceEecc
Confidence 000112223355556899999977 4589999888766543
No 238
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=82.29 E-value=22 Score=36.77 Aligned_cols=110 Identities=18% Similarity=0.052 Sum_probs=60.5
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCc
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 235 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 235 (518)
++.+++..+..+ .+..||+.+.+-+.+.. .+. ......-+++.+++++.+..+ ...++++|+.+.+
T Consensus 121 g~~~~~~s~~~~------~~~l~d~~~g~~~~l~~---~~~---~~~~~spDG~~la~~~~~~~~--~~~i~~~d~~~g~ 186 (582)
T 3o4h_A 121 GEAVVFTGATED------RVALYALDGGGLRELAR---LPG---FGFVSDIRGDLIAGLGFFGGG--RVSLFTSNLSSGG 186 (582)
T ss_dssp SSCEEEEEECSS------CEEEEEEETTEEEEEEE---ESS---CEEEEEEETTEEEEEEEEETT--EEEEEEEETTTCC
T ss_pred CCeEEEEecCCC------CceEEEccCCcEEEeec---CCC---ceEEECCCCCEEEEEEEcCCC--CeEEEEEcCCCCC
Confidence 455555544322 24477888888777654 222 222223455555555544322 2459999999998
Q ss_pred EEEeecCCCCCCCCCCcEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEE
Q 010115 236 WLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWT 288 (518)
Q Consensus 236 W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 288 (518)
++.+. ..+. .....+.. +++.|+ .+..++ ...++++|+++.+..
T Consensus 187 ~~~l~---~~~~--~~~~~~~SpDG~~l~-~~~~~~---~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 187 LRVFD---SGEG--SFSSASISPGMKVTA-GLETAR---EARLVTVDPRDGSVE 231 (582)
T ss_dssp CEEEC---CSSC--EEEEEEECTTSCEEE-EEECSS---CEEEEEECTTTCCEE
T ss_pred ceEee---cCCC--ccccceECCCCCEEE-EccCCC---eeEEEEEcCCCCcEE
Confidence 88774 1111 11223333 455344 332222 247999999998877
No 239
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=80.61 E-value=38 Score=31.77 Aligned_cols=141 Identities=17% Similarity=0.123 Sum_probs=71.5
Q ss_pred ceeEEEEECCCCcE-EEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCc--c-cCcEEEEEcCCCcEEEeecCCCCCC
Q 010115 172 RVSVWTFDTETECW-SVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRR--K-LNDLHMFDLKSLTWLPLHCTGTGPS 247 (518)
Q Consensus 172 ~~~v~~yd~~t~~W-~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~--~-~~~~~~yd~~t~~W~~~~~~g~~p~ 247 (518)
...++++|+.+++. ..+.. + .....+...+.+++.+..+.... . ...++.+| +.+++.+.. .
T Consensus 151 ~~~l~~~d~~~~~~~~~l~~----~---~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~--~--- 216 (347)
T 2gop_A 151 KTTFWIFDTESEEVIEEFEK----P---RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFE--K--- 216 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEE----E---TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEE--E---
T ss_pred cceEEEEECCCCeEEeeecC----C---CcccccCCCCeEEEEEecccccccccccccEEEeC--CCceEEecc--C---
Confidence 35799999999887 65553 1 22333444444555554332111 2 45788888 777777752 1
Q ss_pred CCCCcEEEEECCcEEEEEcCCCC--CCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCCCcC
Q 010115 248 PRSNHVAALYDDKNLLIFGGSSK--SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHA 325 (518)
Q Consensus 248 ~r~~~~~~~~~~~~lyv~GG~~~--~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 325 (518)
.......-+++.|++.+.... ......++.+| +.++..+... . ...........+.+|+.+...+ ..
T Consensus 217 --~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~---~-~~~~~~~~~~sdg~~~~~~~~~---~~ 285 (347)
T 2gop_A 217 --VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDE---V-DRGVGQAKIKDGKVYFTLFEEG---SV 285 (347)
T ss_dssp --ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTT---C-CSEEEEEEEETTEEEEEEEETT---EE
T ss_pred --cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEecccc---C-CcccCCccEEcCcEEEEEecCC---cE
Confidence 111222445553444442221 12345799999 6666666432 1 1111221223244666665433 24
Q ss_pred eEEEEECCCCceEEe
Q 010115 326 ETLIFDILKGEWSVA 340 (518)
Q Consensus 326 ~v~~yd~~~~~W~~~ 340 (518)
.+| ++ +++...+
T Consensus 286 ~l~-~~--~g~~~~~ 297 (347)
T 2gop_A 286 NLY-IW--DGEIKPI 297 (347)
T ss_dssp EEE-EE--SSSEEEE
T ss_pred EEE-Ec--CCceEEE
Confidence 577 77 3444444
No 240
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=80.03 E-value=23 Score=31.27 Aligned_cols=153 Identities=15% Similarity=0.192 Sum_probs=79.3
Q ss_pred EEEEECCEEEEEcCcCCCCCCceeEEEEECCCCc---EEEeeec-CCCCCCCcceEEEEECCEEEEEcccCCCCcccCcE
Q 010115 151 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC---WSVVEAK-GDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDL 226 (518)
Q Consensus 151 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~---W~~~~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 226 (518)
+++..++++|+|-|. .+|+++..... =..+... ..+|. ....+....++++|+|-| +..
T Consensus 10 A~~~~~g~~~fFkg~--------~~w~~~~~~~~~gyP~~I~~~w~glP~-~iDAa~~~~~g~~yfFkg--------~~y 72 (196)
T 3c7x_A 10 TVAMLRGEMFVFKER--------WFWRVRNNQVMDGYPMPIGQFWRGLPA-SINTAYERKDGKFVFFKG--------DKH 72 (196)
T ss_dssp EEEEETTEEEEEETT--------EEEEEETTEECTTCSEEHHHHSTTCCS-SCCEEEECTTSCEEEEET--------TEE
T ss_pred EEEEcCCEEEEEECC--------EEEEEECCccCCCCceEhhHhccCCCC-CccEEEEeCCCcEEEecC--------CEE
Confidence 455678999999775 48888643210 0111110 13554 333332224688999855 347
Q ss_pred EEEEcCCCcE---EEeecCC-CCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEE-----EeecCCCCC
Q 010115 227 HMFDLKSLTW---LPLHCTG-TGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWT-----RIKIRGFHP 297 (518)
Q Consensus 227 ~~yd~~t~~W---~~~~~~g-~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~-----~v~~~~~~p 297 (518)
|+|+-.+... ..+...+ .+|......+.....++.+|+|-| +..|+||..+++-. .+..-+ .
T Consensus 73 w~~~~~~~~~gyPk~I~~~~~glP~~~IDAA~~~~~~g~~yfFkG-------~~yw~yd~~~~~v~~gyPk~i~~~~--g 143 (196)
T 3c7x_A 73 WVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRG-------NKYYRFNEELRAVDSEYPKNIKVWE--G 143 (196)
T ss_dssp EEEETTEECTTCSEEGGGTCBSCCSSCCSEEEEETTTTEEEEEET-------TEEEEEETTTTEECTTCSEEGGGSB--T
T ss_pred EEEeCCcccCCCCeEhhhcCCCCCCCcccEEEEEccCCEEEEEEC-------CEEEEEeCCcccccCCCCccHHHCC--C
Confidence 8887532110 1222111 144333443332223444888876 36899998765321 111100 1
Q ss_pred CCCcceEEEEE-CC-EEEEEcccCCCCCcCeEEEEECCCCc
Q 010115 298 SPRAGCCGVLC-GT-KWYIAGGGSRKKRHAETLIFDILKGE 336 (518)
Q Consensus 298 ~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~~~~ 336 (518)
.|..-.+|... ++ ++|++-| +..|+||..+.+
T Consensus 144 ip~~idaAf~~~~~~~~YfFkg-------~~y~r~d~~~~~ 177 (196)
T 3c7x_A 144 IPESPRGSFMGSDEVFTYFYKG-------NKYWKFNNQKLK 177 (196)
T ss_dssp CCSSCSEEEECTTSSEEEEEET-------TEEEEEETTTTE
T ss_pred cCCCcceeEEecCCCEEEEEEC-------CEEEEEECCcce
Confidence 11223344444 44 8999977 458999987754
No 241
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=79.98 E-value=41 Score=31.77 Aligned_cols=63 Identities=10% Similarity=0.035 Sum_probs=34.1
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCC
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~ 234 (518)
++.+++.|+.+. .+..||+.+.+....-. ... ..-.+++. -++..++.||.+. .+.+||+...
T Consensus 87 ~~~~l~s~s~D~------~v~lwd~~~~~~~~~~~---~h~-~~v~~v~~sp~~~~l~s~~~d~------~i~~wd~~~~ 150 (343)
T 2xzm_R 87 ENCFAISSSWDK------TLRLWDLRTGTTYKRFV---GHQ-SEVYSVAFSPDNRQILSAGAER------EIKLWNILGE 150 (343)
T ss_dssp STTEEEEEETTS------EEEEEETTSSCEEEEEE---CCC-SCEEEEEECSSTTEEEEEETTS------CEEEEESSSC
T ss_pred CCCEEEEEcCCC------cEEEEECCCCcEEEEEc---CCC-CcEEEEEECCCCCEEEEEcCCC------EEEEEeccCC
Confidence 456666776543 68889998876433221 011 11122222 2456666777553 3777887643
No 242
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=79.93 E-value=12 Score=35.05 Aligned_cols=155 Identities=11% Similarity=0.000 Sum_probs=78.3
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCC
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~ 234 (518)
++.||+.+-.. ..+++|++ +.+.+.... +... -.+++. -++++|+.... ...+.+||+. .
T Consensus 56 g~~l~~~d~~~------~~i~~~~~-~g~~~~~~~----~~~~-~~gl~~d~dG~l~v~~~~------~~~v~~~~~~-g 116 (305)
T 3dr2_A 56 QRTLVWSDLVG------RRVLGWRE-DGTVDVLLD----ATAF-TNGNAVDAQQRLVHCEHG------RRAITRSDAD-G 116 (305)
T ss_dssp GTEEEEEETTT------TEEEEEET-TSCEEEEEE----SCSC-EEEEEECTTSCEEEEETT------TTEEEEECTT-S
T ss_pred CCEEEEEECCC------CEEEEEeC-CCCEEEEeC----CCCc-cceeeECCCCCEEEEECC------CCEEEEECCC-C
Confidence 45677776442 26889998 455554432 1111 223333 25678876321 1358888886 6
Q ss_pred cEEEeecCC-CCCCCCCCcEEEEECCcEEEEE----cCCCC--------CCCCCcEEEEEcCCCeEEEeecCCCCCCCCc
Q 010115 235 TWLPLHCTG-TGPSPRSNHVAALYDDKNLLIF----GGSSK--------SKTLNDLYSLDFETMIWTRIKIRGFHPSPRA 301 (518)
Q Consensus 235 ~W~~~~~~g-~~p~~r~~~~~~~~~~~~lyv~----GG~~~--------~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~ 301 (518)
+.+.+.... ..+..+. ..+++..+..+|+. |-... ......|++||+++.+++.+. .. ..+
T Consensus 117 ~~~~~~~~~~~~~~~~~-~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~--~~p-- 190 (305)
T 3dr2_A 117 QAHLLVGRYAGKRLNSP-NDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DL--DHP-- 190 (305)
T ss_dssp CEEEEECEETTEECSCC-CCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EE--SSE--
T ss_pred CEEEEEeccCCCccCCC-CCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cC--CCC--
Confidence 666553210 1111111 22444444447774 32110 112357999999888877765 21 111
Q ss_pred ceEEEEE-CC-EEEEEcccCCCCCcCeEEEEECCCCc
Q 010115 302 GCCGVLC-GT-KWYIAGGGSRKKRHAETLIFDILKGE 336 (518)
Q Consensus 302 ~~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~~~~ 336 (518)
.+.+.. ++ .||+............+++||+....
T Consensus 191 -~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~ 226 (305)
T 3dr2_A 191 -NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA 226 (305)
T ss_dssp -EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE
T ss_pred -cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC
Confidence 123332 33 58887543211112568999987654
No 243
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=79.67 E-value=50 Score=32.56 Aligned_cols=151 Identities=11% Similarity=0.020 Sum_probs=83.7
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE--ECCEEEEEcccCCCCcccCcEEEEEcCC
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLKS 233 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t 233 (518)
++.||+..... ..+.++|+.+++-..+.... ...+ ++. .++.||+...... ..++++|+.+
T Consensus 141 ~g~lyv~d~~~------~~I~~id~~~g~~~~~~~~~-----~~~~-ia~~~~g~~l~~~d~~~~-----~~I~~~d~~~ 203 (409)
T 3hrp_A 141 NNTVLAYQRDD------PRVRLISVDDNKVTTVHPGF-----KGGK-PAVTKDKQRVYSIGWEGT-----HTVYVYMKAS 203 (409)
T ss_dssp TTEEEEEETTT------TEEEEEETTTTEEEEEEETC-----CBCB-CEECTTSSEEEEEBSSTT-----CEEEEEEGGG
T ss_pred CCCEEEEecCC------CcEEEEECCCCEEEEeeccC-----CCCc-eeEecCCCcEEEEecCCC-----ceEEEEEcCC
Confidence 57899986532 36999999988877665421 1222 333 2356776643221 1689999875
Q ss_pred Cc-EEEeecCCCCCCCCCCcEEEEEC-CcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcc-e-EEEEE-
Q 010115 234 LT-WLPLHCTGTGPSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG-C-CGVLC- 308 (518)
Q Consensus 234 ~~-W~~~~~~g~~p~~r~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~-~-~~~~~- 308 (518)
.. ...+... ..+....-+.+++.. +..||+... .+.+++||+++.....+...+........ . ..++.
T Consensus 204 ~~~~~~~g~~-~~~~~~~p~~iav~p~~g~lyv~d~------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p 276 (409)
T 3hrp_A 204 GWAPTRIGQL-GSTFSGKIGAVALDETEEWLYFVDS------NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYF 276 (409)
T ss_dssp TTCEEEEEEC-CTTSCSCCCBCEECTTSSEEEEECT------TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEET
T ss_pred CceeEEeeec-cchhcCCcEEEEEeCCCCeEEEEEC------CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeC
Confidence 43 2333110 010122223455554 555888432 24699999988776555322111111222 1 44444
Q ss_pred -CCEEEEEcccCCCCCcCeEEEEECCCC
Q 010115 309 -GTKWYIAGGGSRKKRHAETLIFDILKG 335 (518)
Q Consensus 309 -~~~iyv~GG~~~~~~~~~v~~yd~~~~ 335 (518)
++.||+..... ..|++||++..
T Consensus 277 ~~g~lyv~d~~~-----~~I~~~~~~g~ 299 (409)
T 3hrp_A 277 VDSNFYMSDQNL-----SSVYKITPDGE 299 (409)
T ss_dssp TTTEEEEEETTT-----TEEEEECTTCC
T ss_pred CCCEEEEEeCCC-----CEEEEEecCCC
Confidence 58999985432 45899998765
No 244
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=78.32 E-value=38 Score=30.40 Aligned_cols=156 Identities=12% Similarity=0.114 Sum_probs=75.7
Q ss_pred EEEEECCEEEEEcccCCCCcccCcEEEEEcCCCc-EEE--eecC-CCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcE
Q 010115 202 TVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT-WLP--LHCT-GTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDL 277 (518)
Q Consensus 202 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~--~~~~-g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v 277 (518)
+++..++++|+|=|. .+|+++..... ... +... ..+| .....+.....++.+|+|-| +..
T Consensus 35 Ai~~~~g~~~fFkg~--------~~Wr~~~~~~~~~~P~~I~~~wp~lp-~~IDAA~~~~~~~k~yfFkG-------~~y 98 (218)
T 1gen_A 35 GIAQIRGEIFFFKDR--------FIWRTVTPRDKPMGPLLVATFWPELP-EKIDAVYEAPQEEKAVFFAG-------NEY 98 (218)
T ss_dssp EEEEETTEEEEEETT--------EEEEESSTTSCCEEEEEGGGTCTTSC-SCCSEEEEETTTTEEEEEET-------TEE
T ss_pred EEEeCCCcEEEEECC--------EEEEEeCCCCccCCCEEHHHhcCCCC-CCccEEEEECCCCEEEEEeC-------CEE
Confidence 445578999999653 35555443311 111 1111 1233 23333222223344888866 468
Q ss_pred EEEEcCCCe---EEEeecCCCCCCCCcceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCCCceEE-----eecCCCCC
Q 010115 278 YSLDFETMI---WTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSV-----AITSPSSS 347 (518)
Q Consensus 278 ~~yd~~~~~---W~~v~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-----~~~~~~~~ 347 (518)
|+|+-.+.. =+.+...+.+.....-.+|... ++++|+|-| +..|+||..+.+-.. +...=.
T Consensus 99 W~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG-------~~ywr~d~~~~~v~~gyPr~i~~~w~-- 169 (218)
T 1gen_A 99 WIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG-------DKFWRYNEVKKKMDPGFPKLIADAWN-- 169 (218)
T ss_dssp EEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCCEEHHHHSS--
T ss_pred EEEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEEC-------CEEEEEECccccccCCCCcchhhccC--
Confidence 999842110 0112111222222223344443 689999977 458999987754221 110000
Q ss_pred CCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 348 VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 348 ~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
..+.. -- +++...+.+.+|.|-|. ..|.||..+..
T Consensus 170 g~p~~-id-aAf~~~~~g~~YfFkg~------~y~~~~~~~~~ 204 (218)
T 1gen_A 170 AIPDN-LD-AVVDLQGGGHSYFFKGA------YYLKLENQSLK 204 (218)
T ss_dssp SCCSS-CS-EEEECTTTCEEEEEETT------EEEEEETTEEE
T ss_pred CCCCC-CC-EEEEEcCCCcEEEEECC------EEEEEECCcee
Confidence 01111 12 22333334678888775 67888875543
No 245
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=77.93 E-value=83 Score=34.16 Aligned_cols=269 Identities=10% Similarity=0.103 Sum_probs=130.0
Q ss_pred CCCeEEeccCCCCCCCccceEEEEE---CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccc
Q 010115 73 SENWMVLSIAGDKPIPRFNHAAAVI---GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRG 149 (518)
Q Consensus 73 ~~~W~~l~~~~~~p~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~ 149 (518)
..+|+.+. . .....-.++++. .+.+|+ |+.. ..+++-+-...+|+.+...... .....+..
T Consensus 3 ~~~W~~~~---~-~~~g~i~~i~~~p~~~~~~~a-~~~~-----ggv~rS~DgG~tW~~~~~~~~~------~~~~~~~i 66 (789)
T 1sqj_A 3 HYEFKNVA---I-GGGGYITGIVAHPKTKDLLYA-RTDI-----GGAYRWDAGTSKWIPLNDFIEA------QDMNIMGT 66 (789)
T ss_dssp -CEEEECC---C-CBCSCEEEEEECSSSTTCEEE-EESS-----SCEEEEETTTTEEEESCTTCCG------GGGGGCSE
T ss_pred cccceEcc---C-CCCCcEEEEEECCCCCCEEEE-EecC-----CCEEEecCCCCCeeECccCCCc------ccccCCce
Confidence 46799985 2 222222333333 244655 3322 2477777677899997641000 00011223
Q ss_pred eEEEEEC---CEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCC---CCC-cceEEEEE---CCEEEEEcccCCC
Q 010115 150 HSLISWG---KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIP---VAR-SGHTVVRA---SSVLILFGGEDGK 219 (518)
Q Consensus 150 ~~~~~~~---~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p---~~r-~~~~~~~~---~~~iyv~GG~~~~ 219 (518)
+++++.- +.+|+..|...... ...|++-+-.-.+|+.+...-..+ ..| ..+.+++. .+.+|+ |...
T Consensus 67 ~~ia~dp~~~~~i~~~~g~~~~~~-~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~-g~~~-- 142 (789)
T 1sqj_A 67 ESIALDPNNPDRLYLAQGRYVGDE-WAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWM-GTRT-- 142 (789)
T ss_dssp EEEEEETTEEEEEEEEECSCTTSS-CCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEE-ECSS--
T ss_pred eEEEECCCCCCEEEEEeCccCCCc-ccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEE-Eecc--
Confidence 4455442 57888766421011 135666555567899986411110 122 22345554 346666 3321
Q ss_pred CcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEE---CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCC
Q 010115 220 RRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY---DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFH 296 (518)
Q Consensus 220 ~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~ 296 (518)
..+++=+-.-.+|+++.....+...-.......+ +...+|+..... ..+++=.-...+|+.+...
T Consensus 143 ----~gl~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~-----~~v~~S~DgG~TW~~~~~~--- 210 (789)
T 1sqj_A 143 ----EGIWKSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATAP-----QGMYVTHDGGVSWEPVAGQ--- 210 (789)
T ss_dssp ----SCEEEESSTTSSCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEEESST-----TCEEEESSTTSSCEECTTC---
T ss_pred ----CCEEEECCCCcccCCCccCccccCCCCCeEEEEECCCCCCEEEEEEcCC-----CeEEEEcCCCcCcccCCCC---
Confidence 2354433334789998621111011122222332 233466654321 3455544456789998732
Q ss_pred CCC----------------CcceEEEEE--CCEEEEEcccCCC---CCcCeEEEEECCCCceEEeecCCCC-CCCC----
Q 010115 297 PSP----------------RAGCCGVLC--GTKWYIAGGGSRK---KRHAETLIFDILKGEWSVAITSPSS-SVTS---- 350 (518)
Q Consensus 297 p~~----------------r~~~~~~~~--~~~iyv~GG~~~~---~~~~~v~~yd~~~~~W~~~~~~~~~-~~~~---- 350 (518)
|.. ...+.+++. .+.||+..+.... .....+++.+-...+|+.+...+.. .+..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~p~~g~~g~l~~S~DgG~tW~~~~~~~~~~~p~~~~~~ 290 (789)
T 1sqj_A 211 PSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVTYADYPGPWGVTFGEVWRQNRTSGAWDDITPRVGNSSPAPYNNQ 290 (789)
T ss_dssp CCSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEEEESSCSSSCCCCCCEEEEETTTCCEEECCCCTTTEESCCCSSC
T ss_pred cCccccccccccCcccccccccceeEEcCCCCeEEEEEecCCCCCCCCCceEEEEeCCCCceEECcCCCCcccccccccc
Confidence 221 111444433 7889987432111 1235689999999999998642211 0000
Q ss_pred CC---CceEEEEeeCCccEEEEEcCC
Q 010115 351 NK---GFTLVLVQHKEKDFLVAFGGI 373 (518)
Q Consensus 351 r~---~~s~~~~~~~~~~~l~v~GG~ 373 (518)
.. ++..+.+...+.+.||+.+..
T Consensus 291 ~~~~~g~~~lav~p~~~~~v~~~~~~ 316 (789)
T 1sqj_A 291 TFPAGGFCGLSVDATNPNRLVVITLD 316 (789)
T ss_dssp CSCCCEEEEEEEETTEEEEEEEEEEC
T ss_pred ccccCceEEEEECCCCCCEEEEEEec
Confidence 12 444555543334678877654
No 246
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=77.83 E-value=51 Score=32.91 Aligned_cols=120 Identities=15% Similarity=0.126 Sum_probs=63.0
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE--ECCEEEEEccc---CCCCcccCcEEEEE
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR--ASSVLILFGGE---DGKRRKLNDLHMFD 230 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~---~~~~~~~~~~~~yd 230 (518)
.+.+||.-...... .+.|.++|+.+++-...-+.+ ..- .+++ .+..+|+.--. ...+...+.+.++|
T Consensus 84 ~~~vyV~n~~~~~~--~~~VsVID~~t~~vv~~I~vG-----~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD 155 (426)
T 3c75_H 84 ARRVYIQDPAHFAA--ITQQFVIDGSTGRILGMTDGG-----FLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFD 155 (426)
T ss_dssp TTEEEEEECTTTCS--SEEEEEEETTTTEEEEEEEEC-----SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCEEEEECCCcCCC--CCeEEEEECCCCEEEEEEECC-----CCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEE
Confidence 46778875432111 168999999998754433322 222 2333 34578886311 00111246799999
Q ss_pred cCCCcEEE-eecCCCCC--CCCCCcEEEE-ECCcEEEEEcCCCCCCCCCcEEEEEcCCCeE
Q 010115 231 LKSLTWLP-LHCTGTGP--SPRSNHVAAL-YDDKNLLIFGGSSKSKTLNDLYSLDFETMIW 287 (518)
Q Consensus 231 ~~t~~W~~-~~~~g~~p--~~r~~~~~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 287 (518)
+.+.+-.. +...+... ....-+.+++ -+++.+||..-. ..+.|.++|+.+++=
T Consensus 156 ~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~----~~~~VsVID~~t~kv 212 (426)
T 3c75_H 156 PVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS----PAPAVGVVDLEGKTF 212 (426)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS----SSCEEEEEETTTTEE
T ss_pred CCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC----CCCeEEEEECCCCeE
Confidence 99887543 32110000 0011123333 356668886321 135799999988764
No 247
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=77.28 E-value=72 Score=33.10 Aligned_cols=192 Identities=11% Similarity=0.040 Sum_probs=95.2
Q ss_pred EEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCCcEE
Q 010115 159 VLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWL 237 (518)
Q Consensus 159 iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~ 237 (518)
.++.|+.+. .+..||..+.+....-. .....-.+++. -++.+++.|+.+. .+.++|..+.+-.
T Consensus 162 ~l~s~s~D~------~v~lwd~~~~~~~~~l~----~H~~~V~~v~fspdg~~las~s~D~------~i~lwd~~~g~~~ 225 (611)
T 1nr0_A 162 RIISGSDDN------TVAIFEGPPFKFKSTFG----EHTKFVHSVRYNPDGSLFASTGGDG------TIVLYNGVDGTKT 225 (611)
T ss_dssp EEEEEETTS------CEEEEETTTBEEEEEEC----CCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTCCEE
T ss_pred EEEEEeCCC------eEEEEECCCCeEeeeec----cccCceEEEEECCCCCEEEEEECCC------cEEEEECCCCcEe
Confidence 566666543 47777876654332211 01111122222 2567778887654 3788898776654
Q ss_pred EeecCCCC---CCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEE
Q 010115 238 PLHCTGTG---PSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYI 314 (518)
Q Consensus 238 ~~~~~g~~---p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv 314 (518)
..-..... .....-.+++...+..+++.|+.++ .+..+|+.+.+....-..+. ........+..++..++
T Consensus 226 ~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~-----~v~lWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~ 298 (611)
T 1nr0_A 226 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK-----TIKIWNVATLKVEKTIPVGT--RIEDQQLGIIWTKQALV 298 (611)
T ss_dssp EECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS-----EEEEEETTTTEEEEEEECCS--SGGGCEEEEEECSSCEE
T ss_pred eeeccccccccccCCCEEEEEECCCCCEEEEEeCCC-----eEEEEeCCCCceeeeecCCC--CccceeEEEEEcCCEEE
Confidence 32100000 1111112333333333677776653 58899998877654433211 11112223334666666
Q ss_pred EcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 315 AGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 315 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
.++.++ .+..+|+.+..-..... . -......+.+.. ++..++.|+.++ .+.++|+.+.+
T Consensus 299 s~s~d~-----~i~~~~~~~~~~~~~~~--g----h~~~v~~l~~sp--dg~~l~s~s~D~----~v~~Wd~~~~~ 357 (611)
T 1nr0_A 299 SISANG-----FINFVNPELGSIDQVRY--G----HNKAITALSSSA--DGKTLFSADAEG----HINSWDISTGI 357 (611)
T ss_dssp EEETTC-----CEEEEETTTTEEEEEEC--C----CSSCEEEEEECT--TSSEEEEEETTS----CEEEEETTTCC
T ss_pred EEeCCC-----cEEEEeCCCCCcceEEc--C----CCCCEEEEEEeC--CCCEEEEEeCCC----cEEEEECCCCc
Confidence 666554 37788887765333221 0 011123333332 233556666654 57788876654
No 248
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=77.15 E-value=53 Score=31.50 Aligned_cols=181 Identities=9% Similarity=-0.034 Sum_probs=90.6
Q ss_pred CcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEE-ECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecC
Q 010115 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 192 (518)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~ 192 (518)
..+.++|+.+.+....... .... .+++. -++++++.|+.. .+.+++..+..........
T Consensus 157 ~~i~iwd~~~~~~~~~~~~------------~~~V-~~v~fspdg~~l~s~s~~-------~~~~~~~~~~~~~~~~~~~ 216 (365)
T 4h5i_A 157 AIMRIIDPSDLTEKFEIET------------RGEV-KDLHFSTDGKVVAYITGS-------SLEVISTVTGSCIARKTDF 216 (365)
T ss_dssp CEEEEEETTTTEEEEEEEC------------SSCC-CEEEECTTSSEEEEECSS-------CEEEEETTTCCEEEEECCC
T ss_pred CEEEEeECCCCcEEEEeCC------------CCce-EEEEEccCCceEEeccce-------eEEEEEeccCcceeeeecC
Confidence 4578899988754433210 0101 12222 256666665532 3677787777654433200
Q ss_pred CCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCC-CCCCCcEEEEECCcEEEEEcCCCCC
Q 010115 193 DIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGP-SPRSNHVAALYDDKNLLIFGGSSKS 271 (518)
Q Consensus 193 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p-~~r~~~~~~~~~~~~lyv~GG~~~~ 271 (518)
............-++..++.++.+... ...++.+|............ .+. ....-.+++...+..+++.|+.++
T Consensus 217 -~~~~~v~~v~fspdg~~l~~~s~d~~~--~~~i~~~~~~~~~~~~~~~~-~~~~~~~~V~~~~~Spdg~~lasgs~D~- 291 (365)
T 4h5i_A 217 -DKNWSLSKINFIADDTVLIAASLKKGK--GIVLTKISIKSGNTSVLRSK-QVTNRFKGITSMDVDMKGELAVLASNDN- 291 (365)
T ss_dssp -CTTEEEEEEEEEETTEEEEEEEESSSC--CEEEEEEEEETTEEEEEEEE-EEESSCSCEEEEEECTTSCEEEEEETTS-
T ss_pred -CCCCCEEEEEEcCCCCEEEEEecCCcc--eeEEeecccccceecceeee-eecCCCCCeEeEEECCCCCceEEEcCCC-
Confidence 111111112223467888887766542 23467777776665443210 111 111112333444444778887654
Q ss_pred CCCCcEEEEEcCCCeEEEeecCCCCCCCCcc-eEEEEE--CCEEEEEcccCCCCCcCeEEEEECC
Q 010115 272 KTLNDLYSLDFETMIWTRIKIRGFHPSPRAG-CCGVLC--GTKWYIAGGGSRKKRHAETLIFDIL 333 (518)
Q Consensus 272 ~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 333 (518)
.|..||.++.+- +... ...... -.++.+ ++++++.|+.++. +.++|+.
T Consensus 292 ----~V~iwd~~~~~~--~~~~---~~gH~~~V~~v~fSpdg~~laS~S~D~t-----vrvw~ip 342 (365)
T 4h5i_A 292 ----SIALVKLKDLSM--SKIF---KQAHSFAITEVTISPDSTYVASVSAANT-----IHIIKLP 342 (365)
T ss_dssp ----CEEEEETTTTEE--EEEE---TTSSSSCEEEEEECTTSCEEEEEETTSE-----EEEEECC
T ss_pred ----EEEEEECCCCcE--EEEe---cCcccCCEEEEEECCCCCEEEEEeCCCe-----EEEEEcC
Confidence 489999887652 2221 111111 123333 6788888776543 7777764
No 249
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=76.95 E-value=42 Score=30.25 Aligned_cols=106 Identities=12% Similarity=0.098 Sum_probs=57.2
Q ss_pred ECCEEEEEcCcCCCCCCceeEEEEECCCC----cEEEeee---c--CCCCCC----CcceEEEE-ECCEEEEEcccCCCC
Q 010115 155 WGKKVLLVGGKTDSGSDRVSVWTFDTETE----CWSVVEA---K--GDIPVA----RSGHTVVR-ASSVLILFGGEDGKR 220 (518)
Q Consensus 155 ~~~~iyv~GG~~~~~~~~~~v~~yd~~t~----~W~~~~~---~--~~~p~~----r~~~~~~~-~~~~iyv~GG~~~~~ 220 (518)
.++++|+|=|. .+|+||..++ ....-+. . ..+|.. ....+... .++++|+|-|
T Consensus 69 ~~g~~~fFkg~--------~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~IDAA~~~~~~gk~yfFkG----- 135 (225)
T 3oyo_A 69 EASEAYVFSGN--------HSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSAFRSTKGKEVYLFKG----- 135 (225)
T ss_dssp STTEEEEEETT--------EEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCCEEEECSSTTEEEEEET-----
T ss_pred CCCeEEEEcCC--------EEEEEecccccCCCceecCchhhhhcCCCCCCcccccccceEEEECCCCcEEEEeC-----
Confidence 57999999774 5899986432 2221110 0 123331 23322221 3689999965
Q ss_pred cccCcEEEEEcCCCcEEEe--ecCCCCCC------CCCCcEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcC
Q 010115 221 RKLNDLHMFDLKSLTWLPL--HCTGTGPS------PRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFE 283 (518)
Q Consensus 221 ~~~~~~~~yd~~t~~W~~~--~~~g~~p~------~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~ 283 (518)
+..|+||..+++...- ......|. +..--++... .+..+|+|-| +..|+||..
T Consensus 136 ---~~yw~~d~~~~~~~~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG-------~~ywr~d~~ 197 (225)
T 3oyo_A 136 ---NKYVRIAYDSKQLVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKG-------QNYVRIDFT 197 (225)
T ss_dssp ---TEEEEEETTTTEEEEEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEET-------TEEEEEECC
T ss_pred ---CeEEEEECCCCeecCCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEEC-------CEEEEEeCC
Confidence 3589999776655431 00001221 2222334443 3444899876 368999987
No 250
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=75.53 E-value=53 Score=30.71 Aligned_cols=208 Identities=11% Similarity=-0.005 Sum_probs=104.6
Q ss_pred eEEEEE--CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCC------
Q 010115 150 HSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGK------ 219 (518)
Q Consensus 150 ~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~------ 219 (518)
++++.. ++.|||.-.. ..++++|+.++..+.+.....-.....-..+++. ++.||+.-.....
T Consensus 83 ~gi~~~~~~g~l~v~d~~-------~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~ 155 (322)
T 2fp8_A 83 YDISYNLQNNQLYIVDCY-------YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQ 155 (322)
T ss_dssp EEEEEETTTTEEEEEETT-------TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHH
T ss_pred ceEEEcCCCCcEEEEECC-------CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccc
Confidence 455555 5789987332 1388899887766555321000011122334443 5688886322100
Q ss_pred -----CcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEEC-CcEEEEEcCCCCCCCCCcEEEEEcCC---CeEEEe
Q 010115 220 -----RRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFET---MIWTRI 290 (518)
Q Consensus 220 -----~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~---~~W~~v 290 (518)
......+++||+.+.+.+.+......| ...++.. ++.|||.-.. .+.|++|++.. ...+.+
T Consensus 156 ~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p-----~gia~~~dg~~lyv~d~~-----~~~I~~~~~~~~~~~~~~~~ 225 (322)
T 2fp8_A 156 QIMDTSDKTGRLIKYDPSTKETTLLLKELHVP-----GGAEVSADSSFVLVAEFL-----SHQIVKYWLEGPKKGTAEVL 225 (322)
T ss_dssp HHHHHTCCCEEEEEEETTTTEEEEEEEEESCC-----CEEEECTTSSEEEEEEGG-----GTEEEEEESSSTTTTCEEEE
T ss_pred eehcccCCCceEEEEeCCCCEEEEeccCCccC-----cceEECCCCCEEEEEeCC-----CCeEEEEECCCCcCCccceE
Confidence 011256999999887766543111122 2344443 3457776321 24699999875 344444
Q ss_pred ecCCCCCCCCcceEEEEE-CCEEEEEcccCCC-----CCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCc
Q 010115 291 KIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRK-----KRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEK 364 (518)
Q Consensus 291 ~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~-----~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~ 364 (518)
... +. -..+++. +++|||....... .....+++||++...-..+.... .. .....+.+... .
T Consensus 226 ~~~---~g---P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~-g~--~~~~~~~~~~~---~ 293 (322)
T 2fp8_A 226 VKI---PN---PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPP-PF--AGEHFEQIQEH---D 293 (322)
T ss_dssp EEC---SS---EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCT-TT--TTSCCCEEEEE---T
T ss_pred EeC---CC---CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCC-CC--ccccceEEEEe---C
Confidence 322 21 1233333 5689887543111 01245899999766555554321 11 11122333332 3
Q ss_pred cEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 365 DFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 365 ~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
+.|||..-. .+.|.+|++..+.
T Consensus 294 g~L~v~~~~----~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 294 GLLYIGTLF----HGSVGILVYDKKG 315 (322)
T ss_dssp TEEEEECSS----CSEEEEEEC----
T ss_pred CEEEEeecC----CCceEEEeccccc
Confidence 678876533 2378888876544
No 251
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=74.55 E-value=0.42 Score=47.32 Aligned_cols=142 Identities=15% Similarity=0.101 Sum_probs=55.9
Q ss_pred EECCEEEEEcCcCCCCCCceeEEEEECCCCc--EEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEc
Q 010115 154 SWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDL 231 (518)
Q Consensus 154 ~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~ 231 (518)
+.++.||+.+.. ..++.+|..+++ |+... +.+ ..+.++.++.+|+.++.+ ..++.+|.
T Consensus 7 v~~~~v~~gs~d-------g~v~a~d~~tG~~~W~~~~--~~~-----~s~p~~~~g~~~v~~s~d------g~l~a~d~ 66 (369)
T 2hz6_A 7 LPETLLFVSTLD-------GSLHAVSKRTGSIKWTLKE--DPV-----LQVPTHVEEPAFLPDPND------GSLYTLGS 66 (369)
T ss_dssp -CTTEEEEEETT-------SEEEEEETTTCCEEEEEEC--CCS-----CCCC-----CCEEECTTT------CCEEEC--
T ss_pred eeCCEEEEEcCC-------CEEEEEECCCCCEEEEecC--CCc-----eecceEcCCCEEEEeCCC------CEEEEEEC
Confidence 346677765432 258999988875 87643 111 122234566788776433 34888998
Q ss_pred CCC--cEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCe--EEEeecCCCCCCCCcceEEEE
Q 010115 232 KSL--TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVL 307 (518)
Q Consensus 232 ~t~--~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~v~~~~~~p~~r~~~~~~~ 307 (518)
++. .|+... ..+... ..+.++..+..+| +|+.+ ..++.+|+++++ |+.-... . .+ .+.
T Consensus 67 ~tG~~~w~~~~---~~~~~~-~~sp~~~~~~~v~-~g~~d-----g~v~a~D~~tG~~~w~~~~~~---~-~~----~~p 128 (369)
T 2hz6_A 67 KNNEGLTKLPF---TIPELV-QASPCRSSDGILY-MGKKQ-----DIWYVIDLLTGEKQQTLSSAF---A-DS----LSP 128 (369)
T ss_dssp ---CCSEECSC---CHHHHH-TTCSCC-----CC-CCEEE-----EEEEEECCC--------------------------
T ss_pred CCCceeeeeec---cCcccc-ccCceEecCCEEE-EEeCC-----CEEEEEECCCCcEEEEecCCC---c-cc----ccc
Confidence 654 465321 111000 0111111233244 34322 358889887653 6533211 0 01 111
Q ss_pred ECCEEEEEcccCCCCCcCeEEEEECCCCc--eEE
Q 010115 308 CGTKWYIAGGGSRKKRHAETLIFDILKGE--WSV 339 (518)
Q Consensus 308 ~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~ 339 (518)
.++.+|+ |+.+ ..++.+|+.+++ |+.
T Consensus 129 ~~~~v~~-~~~d-----g~v~a~d~~tG~~~W~~ 156 (369)
T 2hz6_A 129 STSLLYL-GRTE-----YTITMYDTKTRELRWNA 156 (369)
T ss_dssp ----EEE-EEEE-----EEEECCCSSSSSCCCEE
T ss_pred cCCEEEE-EecC-----CEEEEEECCCCCEEEeE
Confidence 3445554 3322 347888887654 775
No 252
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=74.38 E-value=52 Score=30.04 Aligned_cols=232 Identities=12% Similarity=0.099 Sum_probs=104.8
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCCCceeEEE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWT 177 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 177 (518)
+++.++.|+.+ ..+.++|..+.+-...... . . .........+.+++.|+... .+..
T Consensus 78 ~~~~l~sgs~D-----g~v~iw~~~~~~~~~~~~~----------h--~-~~~~~~~~~~~~l~s~~~~~------~~~~ 133 (318)
T 4ggc_A 78 EGNYLAVGTSS-----AEVQLWDVQQQKRLRNMTS----------H--S-ARVGSLSWNSYILSSGSRSG------HIHH 133 (318)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTTEEEEEEEC----------C--S-SCEEEEEEETTEEEEEETTS------EEEE
T ss_pred CCCEEEEEECC-----CcEEEeecCCceeEEEecC----------c--c-ceEEEeecCCCEEEEEecCC------ceEe
Confidence 46677778755 3588899888754332220 0 1 11223334455666665532 3555
Q ss_pred EECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEE--EeecCCCCCCCCCCcEEE
Q 010115 178 FDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWL--PLHCTGTGPSPRSNHVAA 255 (518)
Q Consensus 178 yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~--~~~~~g~~p~~r~~~~~~ 255 (518)
++..+.........+ .............+..++.|+.++ .+.+||+.+.+-. .... .......-.+.+
T Consensus 134 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~s~~~d~------~i~iwd~~~~~~~~~~~~~--~~~~~~~v~~~~ 203 (318)
T 4ggc_A 134 HDVRVAEHHVATLSG--HSQEVCGLRWAPDGRHLASGGNDN------LVNVWPSAPGEGGWVPLQT--FTQHQGAVKAVA 203 (318)
T ss_dssp EETTSSSCEEEEEEC--CSSCEEEEEECTTSSEEEEEETTS------CEEEEESSCBTTBSCCSEE--ECCCCSCEEEEE
T ss_pred eecCCCceeEEEEcC--ccCceEEEEEcCCCCEEEEEecCc------ceeEEECCCCcccccceee--ecccCCceEEEE
Confidence 666555433322211 111111112223456666666553 3778888654311 1100 000000111122
Q ss_pred EE--CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEcccCCCCCcCeEEEEE
Q 010115 256 LY--DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFD 331 (518)
Q Consensus 256 ~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd 331 (518)
.. +...+.+.+|... ..+..+|.....-...... ... ....+.. ++.+++.+|... ..+.+||
T Consensus 204 ~~~~~~~~~~~~~~~~~----~~i~lwd~~~~~~~~~~~~---~~~--v~~~~~~~~~~~~~~~sg~~d----~~i~iwd 270 (318)
T 4ggc_A 204 WCPWQSNVLATGGGTSD----RHIRIWNVCSGACLSAVDA---HSQ--VCSILWSPHYKELISGHGFAQ----NQLVIWK 270 (318)
T ss_dssp ECTTSTTEEEEEECTTT----CEEEEEETTTCCEEEEEEC---SSC--EEEEEEETTTTEEEEEECTTT----CCEEEEE
T ss_pred ecCCCCcEEEEEecCCC----CEEEEEecccccccccccc---eee--eeeeeecccccceEEEEEcCC----CEEEEEE
Confidence 22 2343444444322 3577888877655444332 111 1222222 456666555433 3488999
Q ss_pred CCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEccc
Q 010115 332 ILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (518)
Q Consensus 332 ~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~ 388 (518)
..+.+-...- ... ......+.+.. ++.+++.||.++ .|-++|+..
T Consensus 271 ~~~~~~~~~l--~gH----~~~V~~l~~sp--dg~~l~S~s~D~----~v~iWd~~~ 315 (318)
T 4ggc_A 271 YPTMAKVAEL--KGH----TSRVLSLTMSP--DGATVASAAADE----TLRLWRCFE 315 (318)
T ss_dssp TTTCCEEEEE--CCC----SSCEEEEEECT--TSSCEEEEETTT----EEEEECCSC
T ss_pred CCCCcEEEEE--cCC----CCCEEEEEEcC--CCCEEEEEecCC----eEEEEECCC
Confidence 8876543321 111 11123333432 233567777654 466666543
No 253
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=73.81 E-value=82 Score=32.28 Aligned_cols=140 Identities=14% Similarity=0.088 Sum_probs=71.5
Q ss_pred ceeEEEEEC--CCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCC
Q 010115 172 RVSVWTFDT--ETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPR 249 (518)
Q Consensus 172 ~~~v~~yd~--~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r 249 (518)
...+|..++ ....- .+.. .+..+ ..+....++.+++..+... .+.+||+.+.+-+.+. ..+.
T Consensus 89 ~~~l~~~~~~~~g~~~-~l~~---~~~~~-~~~~s~dg~~~~~~s~~~~------~~~l~d~~~g~~~~l~---~~~~-- 152 (582)
T 3o4h_A 89 QHALFKVNTSRPGEEQ-RLEA---VKPMR-ILSGVDTGEAVVFTGATED------RVALYALDGGGLRELA---RLPG-- 152 (582)
T ss_dssp CEEEEEEETTSTTCCE-ECTT---SCSBE-EEEEEECSSCEEEEEECSS------CEEEEEEETTEEEEEE---EESS--
T ss_pred ceEEEEEeccCCCccc-cccC---CCCce-eeeeCCCCCeEEEEecCCC------CceEEEccCCcEEEee---cCCC--
Confidence 346888887 44332 3321 12111 2222223445555544332 2347799888877775 2222
Q ss_pred CCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCCCcCeEE
Q 010115 250 SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETL 328 (518)
Q Consensus 250 ~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~ 328 (518)
...+..-+++ .+++++.... ....++.+|+++.+++.+... +. .....+.. +++.++.+...+ ...++
T Consensus 153 -~~~~~spDG~-~la~~~~~~~-~~~~i~~~d~~~g~~~~l~~~---~~--~~~~~~~SpDG~~l~~~~~~~---~~~i~ 221 (582)
T 3o4h_A 153 -FGFVSDIRGD-LIAGLGFFGG-GRVSLFTSNLSSGGLRVFDSG---EG--SFSSASISPGMKVTAGLETAR---EARLV 221 (582)
T ss_dssp -CEEEEEEETT-EEEEEEEEET-TEEEEEEEETTTCCCEEECCS---SC--EEEEEEECTTSCEEEEEECSS---CEEEE
T ss_pred -ceEEECCCCC-EEEEEEEcCC-CCeEEEEEcCCCCCceEeecC---CC--ccccceECCCCCEEEEccCCC---eeEEE
Confidence 2223334566 4554443221 123599999999988877432 11 11122222 555444333222 24688
Q ss_pred EEECCCCceE
Q 010115 329 IFDILKGEWS 338 (518)
Q Consensus 329 ~yd~~~~~W~ 338 (518)
++|+++++..
T Consensus 222 ~~d~~~~~~~ 231 (582)
T 3o4h_A 222 TVDPRDGSVE 231 (582)
T ss_dssp EECTTTCCEE
T ss_pred EEcCCCCcEE
Confidence 9998888776
No 254
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=73.55 E-value=32 Score=36.46 Aligned_cols=110 Identities=14% Similarity=-0.007 Sum_probs=56.6
Q ss_pred eEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCC---cccCcEEEEEcCCCcEEEeecCCCCCCCC
Q 010115 174 SVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKR---RKLNDLHMFDLKSLTWLPLHCTGTGPSPR 249 (518)
Q Consensus 174 ~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~---~~~~~~~~yd~~t~~W~~~~~~g~~p~~r 249 (518)
.++.+|+.+++-..+........... ...+. -+++.++++..+... .....++++|+.+.+-..+... .....+
T Consensus 38 ~i~~~d~~~g~~~~~~~~~~~~~~~v-~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~~ 115 (723)
T 1xfd_A 38 TVRLWNVETNTSTVLIEGKKIESLRA-IRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPP-EVSNAK 115 (723)
T ss_dssp CEEEBCGGGCCCEEEECTTTTTTTTC-SEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCT-TCCSCC
T ss_pred CEEEEECCCCcEEEEecccccccccc-ceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCC-cccccc
Confidence 58889998887555443111100011 22222 355655665443221 1247899999998876655421 111111
Q ss_pred CCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeec
Q 010115 250 SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKI 292 (518)
Q Consensus 250 ~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~ 292 (518)
....+..-+++ .++++.. ++++.+|..+.+-.++..
T Consensus 116 ~~~~~~SPdG~-~la~~~~------~~i~~~~~~~g~~~~~~~ 151 (723)
T 1xfd_A 116 LQYAGWGPKGQ-QLIFIFE------NNIYYCAHVGKQAIRVVS 151 (723)
T ss_dssp CSBCCBCSSTT-CEEEEET------TEEEEESSSSSCCEEEEC
T ss_pred ccccEECCCCC-EEEEEEC------CeEEEEECCCCceEEEec
Confidence 12222222454 3444332 379999988877766654
No 255
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=72.79 E-value=70 Score=31.16 Aligned_cols=157 Identities=13% Similarity=0.171 Sum_probs=82.0
Q ss_pred eEEEEECCEEEEEcCcCCCCCCceeEEEEECCCCcE--EEeeec-CCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCc
Q 010115 150 HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECW--SVVEAK-GDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLND 225 (518)
Q Consensus 150 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W--~~~~~~-~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~ 225 (518)
-+++..++++|+|=|. .+|+++.....- ..+... ..+|. ....+... .++++|+|-| +.
T Consensus 184 DAv~~~~g~~~fFkg~--------~~Wr~~~~~~~~~p~~I~~~wpgLP~-~iDAa~~~~~~g~~~fFkg--------~~ 246 (365)
T 3ba0_A 184 DAVTTVGNKIFFFKDR--------FFWLKVSERPKTSVNLISSLWPTLPS-GIEAAYEIEARNQVFLFKD--------DK 246 (365)
T ss_dssp SCEEEETTEEEEEETT--------EEEECCSSCCCCCEEEHHHHCSSCCS-SCCEEEEEGGGTEEEEEET--------TE
T ss_pred eeEEEcCCeEEEEeCC--------EEEEEcCCCccCCccchhhhccCCCC-CccEEEEecCCCEEEEEeC--------CE
Confidence 3455679999999664 478876544321 111110 12452 23322222 2789999955 33
Q ss_pred EEEEEcCCCc--E-EEeecCCCCCCC--CCCcEEEEEC-CcEEEEEcCCCCCCCCCcEEEEEcCCCeEEE-----eecCC
Q 010115 226 LHMFDLKSLT--W-LPLHCTGTGPSP--RSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTR-----IKIRG 294 (518)
Q Consensus 226 ~~~yd~~t~~--W-~~~~~~g~~p~~--r~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~-----v~~~~ 294 (518)
+|+|+..... + ..+... .+|.. ... +|.... ++.+|+|-| +..|+||..+.+-.. +.. +
T Consensus 247 yWr~~~~~~~~gyPk~I~~~-GlP~~~~~ID-AA~~~~~~~~~yfFkG-------~~yw~yd~~~~~v~~gyPk~I~~-~ 316 (365)
T 3ba0_A 247 YWLISNLRPEPNYPKSIHSF-GFPNFVKKID-AAVFNPRFYRTYFFVD-------NQYWRYDERRQMMDPGYPKLITK-N 316 (365)
T ss_dssp EEECSTTSCTTTCSEETTTT-TCCTTCCCCC-EEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCCCCHHH-H
T ss_pred EEEEcCCcccCCCCceeeec-cCCCCCCCcC-EEEEeCCCCEEEEEEC-------CEEEEEeCCcceecCCCCcchhh-c
Confidence 6666543211 1 122211 13331 223 333332 344888866 479999987653211 000 0
Q ss_pred CCCCCCcceEEEEE-CCEEEEEcccCCCCCcCeEEEEECCCCceEEe
Q 010115 295 FHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 340 (518)
Q Consensus 295 ~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 340 (518)
-+..+..-.+++.. ++++|+|-| +..|+||..+.+-...
T Consensus 317 f~g~p~~iDaA~~~~~g~~YfFkg-------~~ywr~d~~~~~v~~~ 356 (365)
T 3ba0_A 317 FQGIGPKIDAVFYSKNKYYYFFQG-------SNQFEYDFLLQRITKT 356 (365)
T ss_dssp STTCCSSCSEEEEETTTEEEEEET-------TEEEEEETTTTEEEEE
T ss_pred CCCCCCccceeeEecCCcEEEEeC-------CEEEEEECCccEEecc
Confidence 01122223455555 889999977 4589999988776653
No 256
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=72.43 E-value=61 Score=34.68 Aligned_cols=154 Identities=10% Similarity=-0.046 Sum_probs=81.5
Q ss_pred ECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE--ECCEEEEEcccCCCCcccCcEEEEEcC
Q 010115 155 WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLK 232 (518)
Q Consensus 155 ~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~ 232 (518)
.++.||+.-.. ...|+++++....-+.+... .+..+ ..+++ .++.||+.--. ....|+++++.
T Consensus 463 ~~g~LY~tD~~------~~~I~v~d~dg~~~~~l~~~-~~~~P---~giavDp~~g~ly~td~~-----~~~~I~~~~~d 527 (699)
T 1n7d_A 463 IHSNIYWTDSV------LGTVSVADTKGVKRKTLFRE-QGSKP---RAIVVDPVHGFMYWTDWG-----TPAKIKKGGLN 527 (699)
T ss_dssp SSSBCEECCTT------TSCEEEEBSSSCCEEEECCC-SSCCC---CCEECCSSSSCCEECCCS-----SSCCEEBCCSS
T ss_pred eCCcEEEEecc------CCeEEEEecCCCceEEEEeC-CCCCc---ceEEEccCCCcEEEcccC-----CCCeEEEEeCC
Confidence 36789886322 23588999887654444321 12222 23333 35778875311 12568888776
Q ss_pred CCcEEEeecCCCCCCCCCCcEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCE
Q 010115 233 SLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTK 311 (518)
Q Consensus 233 t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~ 311 (518)
...-+.+.. ..+..|+ ++++- .++.||+.-.. .+.|+++|+....-+.+.... .......++++.++.
T Consensus 528 G~~~~~l~~-~~l~~Pn---Glavd~~~~~LY~aD~~-----~~~I~~~d~dG~~~~~~~~~~--~~~~~P~glavd~~~ 596 (699)
T 1n7d_A 528 GVDIYSLVT-ENIQWPN---GITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILEDE--KRLAHPFSLAVFEDK 596 (699)
T ss_dssp SCCCCEESC-SSCSSCC---CEEECTTTCCEEEEETT-----TTEEEEECSSSSCCEEECCCS--SSCSSCCCCEEETTE
T ss_pred CCCeeEEEe-CCCCCcc---EEEEeccCCEEEEEecC-----CCeEEEEccCCCceEEEEecC--CcCCCceEeEEECCE
Confidence 443333321 1122221 23343 33448887532 357999998765444443221 111222455667889
Q ss_pred EEEEcccCCCCCcCeEEEEECCCCceEE
Q 010115 312 WYIAGGGSRKKRHAETLIFDILKGEWSV 339 (518)
Q Consensus 312 iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 339 (518)
||+.-... ..|.++|+.+++-..
T Consensus 597 lywtd~~~-----~~V~~~d~~~G~~~~ 619 (699)
T 1n7d_A 597 VFWTDIIN-----EAIFSANRLTGSDVN 619 (699)
T ss_dssp EEEECSTT-----TCEEEEETTTEEEEE
T ss_pred EEEEeCCC-----CeEEEEEccCCCceE
Confidence 99986332 458999987655443
No 257
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=71.48 E-value=36 Score=32.81 Aligned_cols=142 Identities=14% Similarity=0.095 Sum_probs=74.4
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCc---EEEeeecCCCCCCCcceE-EEEE--CCEEEEEcccCCCCcccCcEEEE
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETEC---WSVVEAKGDIPVARSGHT-VVRA--SSVLILFGGEDGKRRKLNDLHMF 229 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~---W~~~~~~~~~p~~r~~~~-~~~~--~~~iyv~GG~~~~~~~~~~~~~y 229 (518)
++.+||.+.... ..|+++++.... |-...+ ....+.+.. ++.. ++.|++..+ . ..+++|
T Consensus 147 ~GnaYVt~s~~~-----~~I~rV~pdG~~~~~~~~~~~---~~~~~~G~nGIv~~pdg~~Liv~~~-~------g~L~~f 211 (334)
T 2p9w_A 147 DGNSYVAFALGM-----PAIARVSADGKTVSTFAWESG---NGGQRPGYSGITFDPHSNKLIAFGG-P------RALTAF 211 (334)
T ss_dssp TSCEEEEEEESS-----CEEEEECTTSCCEEEEEECCC---CSSSCCSCSEEEEETTTTEEEEESS-S------SSEEEE
T ss_pred CCCEEEeCCCCC-----CeEEEEeCCCCEEeeeeecCC---CcccccCcceEEEeCCCCEEEEEcC-C------CeEEEE
Confidence 589999766531 359999998653 533221 223344443 4444 446777654 2 458999
Q ss_pred EcCCCcEEEeecC--CCC-CCCCCCc-EEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCC---CCcc
Q 010115 230 DLKSLTWLPLHCT--GTG-PSPRSNH-VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPS---PRAG 302 (518)
Q Consensus 230 d~~t~~W~~~~~~--g~~-p~~r~~~-~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~---~r~~ 302 (518)
|+.+....+++.. |.. ...-... ...-.+++.++|.-+. +.++.+-...+ |+.....+..|. ++..
T Consensus 212 D~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~------~~~~~l~S~Dg-W~sa~~~g~~~~~~~~~g~ 284 (334)
T 2p9w_A 212 DVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARA------PYAISFRSWDN-WKSANIKKTKRSELQNSGF 284 (334)
T ss_dssp ECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEET------TEEEEEECSST-TSEEEEEEEECGGGGSSCE
T ss_pred cCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcCC------CCEEEEECCCC-cceeEEeeeecCccccCce
Confidence 9875432122211 211 0000011 1223677744554332 34566655555 988776554444 2333
Q ss_pred eEEEE----ECCEEEEEcccC
Q 010115 303 CCGVL----CGTKWYIAGGGS 319 (518)
Q Consensus 303 ~~~~~----~~~~iyv~GG~~ 319 (518)
.++++ .+++||++.+.-
T Consensus 285 tt~t~~~~~~~~~iYvv~~~f 305 (334)
T 2p9w_A 285 TAVADYYQGSEQGLYAVSAFF 305 (334)
T ss_dssp EEEEEEEETTEEEEEEEECCG
T ss_pred eEEEEeccccCCeEEEEeeec
Confidence 34444 478999987643
No 258
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=70.25 E-value=95 Score=31.29 Aligned_cols=181 Identities=13% Similarity=0.020 Sum_probs=82.3
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCC----cEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCc
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRF----SWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDR 172 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~----~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~ 172 (518)
..+||+-|..+ +.++++|..++ +=.+.-...+.. .+.....-|.+... ++ |||..--+..+...
T Consensus 95 r~~l~v~~l~s-----~~I~viD~~t~p~~p~~~k~ie~~~~~-----~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~ 163 (462)
T 2ece_A 95 RRFLIVPGLRS-----SRIYIIDTKPNPREPKIIKVIEPEEVK-----KVSGYSRLHTVHCGPDA-IYISALGNEEGEGP 163 (462)
T ss_dssp SCEEEEEBTTT-----CCEEEEECCSCTTSCEEEEEECHHHHH-----HHHCEEEEEEEEECSSC-EEEEEEEETTSCSC
T ss_pred CCEEEEccCCC-----CeEEEEECCCCCCCceeeeeechhhcc-----cccCCCcccceeECCCe-EEEEcCCCcCCCCC
Confidence 46688777654 68999998765 222211000000 00011122444333 45 77743222223334
Q ss_pred eeEEEEECCCCcEEEeeecCCCCCCCcceEEEE--ECCEEEEEc---------ccCCCC---cccCcEEEEEcCCCcEEE
Q 010115 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVR--ASSVLILFG---------GEDGKR---RKLNDLHMFDLKSLTWLP 238 (518)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~--~~~~iyv~G---------G~~~~~---~~~~~~~~yd~~t~~W~~ 238 (518)
..+..+|.+|.+-...-+.+..|.. .++.... ..+.+|+-- |.+... +..+.+.+||+.+.+-..
T Consensus 164 g~v~vlD~~T~~v~~~~~~~~~~~~-~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~ 242 (462)
T 2ece_A 164 GGILMLDHYSFEPLGKWEIDRGDQY-LAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH 242 (462)
T ss_dssp CEEEEECTTTCCEEEECCSBCTTCC-CCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE
T ss_pred CeEEEEECCCCeEEEEEccCCCCcc-ccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee
Confidence 6799999998764332221112211 1111211 234444431 222221 346889999998764322
Q ss_pred eecCCC-CCCCCCCcEEEEE--CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeec
Q 010115 239 LHCTGT-GPSPRSNHVAALY--DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKI 292 (518)
Q Consensus 239 ~~~~g~-~p~~r~~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~ 292 (518)
.-..+. -..|| +....+ +++.+||..-.+-....+.|++|..+...|+.+..
T Consensus 243 tI~vg~~g~~P~--~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~v 297 (462)
T 2ece_A 243 SLTLGEENRMAL--ELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKV 297 (462)
T ss_dssp EEESCTTEEEEE--EEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEE
T ss_pred EEecCCCCCccc--eeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEE
Confidence 111110 00111 111111 24556766542222234567766665688877653
No 259
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=70.11 E-value=1.4e+02 Score=33.27 Aligned_cols=76 Identities=18% Similarity=0.213 Sum_probs=42.4
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCC----CCcccCcEEEEEc
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDG----KRRKLNDLHMFDL 231 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~----~~~~~~~~~~yd~ 231 (518)
+++.++++... ..++.+|+.+++-..+... ...........-+++.+++++.+. .......++++|+
T Consensus 389 DG~~la~~~~~------~~v~~~d~~tg~~~~~~~~---~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~ 459 (1045)
T 1k32_A 389 NGKFAVVANDR------FEIMTVDLETGKPTVIERS---REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDM 459 (1045)
T ss_dssp TSSEEEEEETT------SEEEEEETTTCCEEEEEEC---SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEET
T ss_pred CCCEEEEECCC------CeEEEEECCCCceEEeccC---CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEEC
Confidence 45555555432 2799999999887766531 111112222223555556655432 0112357999999
Q ss_pred CCCcEEEee
Q 010115 232 KSLTWLPLH 240 (518)
Q Consensus 232 ~t~~W~~~~ 240 (518)
.+.+...+.
T Consensus 460 ~~g~~~~l~ 468 (1045)
T 1k32_A 460 EGRKIFAAT 468 (1045)
T ss_dssp TTTEEEECS
T ss_pred CCCcEEEee
Confidence 988755543
No 260
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=69.52 E-value=90 Score=31.36 Aligned_cols=151 Identities=13% Similarity=0.112 Sum_probs=75.3
Q ss_pred EEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecC---CCCCCCCCCcEEEEE--CCcEEEEEcCCCCCCCCCc
Q 010115 202 TVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT---GTGPSPRSNHVAALY--DDKNLLIFGGSSKSKTLND 276 (518)
Q Consensus 202 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~---g~~p~~r~~~~~~~~--~~~~lyv~GG~~~~~~~~~ 276 (518)
+++..++++|+|-|. .+|+++.....+...... ..+|.. .. ++... +++ +|+|=| +.
T Consensus 267 Ai~~~~ge~y~Fkg~--------~~wr~~~~~~~~~p~~I~~~Wp~LP~~-iD-Aa~~~~~~g~-~~fFKg-------~~ 328 (450)
T 1su3_A 267 AITTIRGEVMFFKDR--------FYMRTNPFYPEVELNFISVFWPQLPNG-LE-AAYEFADRDE-VRFFKG-------NK 328 (450)
T ss_dssp EEEEETTEEEEEETT--------EEEECCTTSSSCEEEEGGGTCTTSCSS-CC-EEEEEGGGTE-EEEEET-------TE
T ss_pred eEEecCCeEEEEeCC--------EEEEEcCCCCcccceehhHhccCCCCC-ee-EEEEEcCCCe-EEEEeC-------CE
Confidence 456689999999653 355555443333222111 123322 22 22232 455 888866 36
Q ss_pred EEEEEcCCCe--E-EEee-cCCCCCCCCcceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCCCceE-----Eeec-CC
Q 010115 277 LYSLDFETMI--W-TRIK-IRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWS-----VAIT-SP 344 (518)
Q Consensus 277 v~~yd~~~~~--W-~~v~-~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~-----~~~~-~~ 344 (518)
+|+|+..+.. + +.+. ..+-+..+..--+|+.. ++++|+|-| +..|+||..+.+-. .+.. -+
T Consensus 329 ~W~~~~~~~~~gyP~~i~~~~g~P~~~~~IDAA~~~~~~~k~yfFkG-------~~yw~yd~~~~~~~~gYPk~I~~~fp 401 (450)
T 1su3_A 329 YWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVA-------NKYWRYDEYKRSMDPGYPKMIAHDFP 401 (450)
T ss_dssp EEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCSEEHHHHST
T ss_pred EEEecCCcccCCCceeeehhhcCCCCCCccceEEEEcCCCeEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCC
Confidence 8888743210 0 1111 11211112222344444 589999977 46999997654321 1110 01
Q ss_pred CCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 345 SSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 345 ~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
. .+..--+++ .. ++++|.|-|. ..|.||..+.+
T Consensus 402 g---ip~~iDAA~--~~--~g~~YFFkg~------~ywr~d~~~~~ 434 (450)
T 1su3_A 402 G---IGHKVDAVF--MK--DGFFYFFHGT------RQYKFDPKTKR 434 (450)
T ss_dssp T---SCSCCSEEE--EE--TTEEEEEETT------EEEEEETTTTE
T ss_pred C---CCCCccEEE--Ec--CCeEEEEeCC------EEEEEECCcce
Confidence 1 111112222 22 3678888876 68889876654
No 261
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=69.00 E-value=94 Score=30.73 Aligned_cols=203 Identities=14% Similarity=0.165 Sum_probs=111.5
Q ss_pred CCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEE-EEcC-----CCc-EEEeecCCCCCCCCCCc
Q 010115 180 TETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHM-FDLK-----SLT-WLPLHCTGTGPSPRSNH 252 (518)
Q Consensus 180 ~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~-yd~~-----t~~-W~~~~~~g~~p~~r~~~ 252 (518)
.....|++-.- +.+|..-.-|+.+.+++.=|++|=.+++- .-..+-. |-+. ... =+.++. .....-...
T Consensus 267 F~~spW~~t~L-~~i~~vTe~HSFa~i~~~~fa~GyHnGDv-~PRe~G~~yfs~~~~sp~~~vrr~i~s--ey~~~AsEP 342 (670)
T 3ju4_A 267 FHKSPWRKTDL-GLIPSVTEVHSFATIDNNGFAMGYHQGDV-APREVGLFYFPDAFNSPSNYVRRQIPS--EYEPDASEP 342 (670)
T ss_dssp STTSCCEEEEC-CSCTTCSEEEEEEECSSSCEEEEEEECSS-SSCEEEEEEETTTTTCTTCCEEEECCG--GGCTTEEEE
T ss_pred eccCCceeccc-ccccceeeeeeeeEecCCceEEEeccCCC-CcceeeEEEecccccCCcceeeeechh--hhccccccc
Confidence 45667876653 34677778899999998888887665542 2233322 2111 111 122221 122222233
Q ss_pred EEEEECCcEEEEEc-CCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCC----------C
Q 010115 253 VAALYDDKNLLIFG-GSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSR----------K 321 (518)
Q Consensus 253 ~~~~~~~~~lyv~G-G~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~----------~ 321 (518)
+.-.+++. ||+.- |......-+.+.+-+.....|+.+.... ..-....--+.+++.|||||-... +
T Consensus 343 CvkyYdgv-LyLtTRgt~~~~~GS~L~rs~d~Gq~w~slrfp~--nvHhtnlPFakvgD~l~mFgsERA~nEWE~G~pD~ 419 (670)
T 3ju4_A 343 CIKYYDGV-LYLITRGTRGDRLGSSLHRSRDIGQTWESLRFPH--NVHHTTLPFAKVGDDLIMFGSERAENEWEAGAPDD 419 (670)
T ss_dssp EEEEETTE-EEEEEEESCTTSCCCEEEEESSTTSSCEEEECTT--CCCSSCCCEEEETTEEEEEEECSSTTCSSTTCCCC
T ss_pred hhhhhCCE-EEEEecCcCCCCCcceeeeecccCCchhheeccc--cccccCCCcceeCCEEEEEeccccccccccCCCcc
Confidence 44456777 66654 5555556677888888899999997531 122223335667999999985321 1
Q ss_pred C---CcCeEEE--EE-----CCCCceEEeecC--CCCCCCCCCCceEEEEeeCCccEEEEEcCCCCC-------------
Q 010115 322 K---RHAETLI--FD-----ILKGEWSVAITS--PSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE------------- 376 (518)
Q Consensus 322 ~---~~~~v~~--yd-----~~~~~W~~~~~~--~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~------------- 376 (518)
. ....++. .+ .+.-+|..+... ........-|.+.+++. +.---|+|||.+-.
T Consensus 420 RY~a~yPRtF~~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vK--D~~lyyiFGgEd~~np~s~gdN~~k~~ 497 (670)
T 3ju4_A 420 RYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVK--DNYIYYMFGGEDHFNPWTYGDNSAKDP 497 (670)
T ss_dssp CSSCBCCEEEEEEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEE--TTEEEEEEEEBCSCCCCTTTTTTTCCT
T ss_pred cccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEe--CCEEEEEecCcccCCccccccccccCc
Confidence 1 1222332 22 334567776542 12222333445555554 44445789996421
Q ss_pred -----CCCcEEEEEcccCCc
Q 010115 377 -----PSNQVEVLSIEKNES 391 (518)
Q Consensus 377 -----~~~~v~~yd~~~~~w 391 (518)
...++++|-+....-
T Consensus 498 ~~~~Ghp~dlY~~ri~i~~~ 517 (670)
T 3ju4_A 498 FKSDGHPSDLYCYKMKIGPD 517 (670)
T ss_dssp TSTTCCCCEEEEEEEECSCC
T ss_pred cccCCCCcceEEEEEEecCC
Confidence 156899998876553
No 262
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=68.91 E-value=77 Score=29.74 Aligned_cols=63 Identities=14% Similarity=0.215 Sum_probs=33.9
Q ss_pred CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCC
Q 010115 207 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETM 285 (518)
Q Consensus 207 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~ 285 (518)
++.+++.|+.+. .+.++|+.+.+....- ... ...-.+++.. +++ .++.||.++ .+..||+...
T Consensus 87 ~~~~l~s~s~D~------~v~lwd~~~~~~~~~~---~~h-~~~v~~v~~sp~~~-~l~s~~~d~-----~i~~wd~~~~ 150 (343)
T 2xzm_R 87 ENCFAISSSWDK------TLRLWDLRTGTTYKRF---VGH-QSEVYSVAFSPDNR-QILSAGAER-----EIKLWNILGE 150 (343)
T ss_dssp STTEEEEEETTS------EEEEEETTSSCEEEEE---ECC-CSCEEEEEECSSTT-EEEEEETTS-----CEEEEESSSC
T ss_pred CCCEEEEEcCCC------cEEEEECCCCcEEEEE---cCC-CCcEEEEEECCCCC-EEEEEcCCC-----EEEEEeccCC
Confidence 455666666543 4788998876543321 011 1112233333 345 666776554 4888887644
No 263
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=67.59 E-value=1.3e+02 Score=31.67 Aligned_cols=66 Identities=15% Similarity=0.095 Sum_probs=33.0
Q ss_pred CcEEEEEcCCCcE-EEeecCCCCCC--CCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEee
Q 010115 224 NDLHMFDLKSLTW-LPLHCTGTGPS--PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIK 291 (518)
Q Consensus 224 ~~~~~yd~~t~~W-~~~~~~g~~p~--~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~ 291 (518)
.+++++|+.+.+- ..+... ..+. .......+...+..++++.... ......++.+|+.+.+...+.
T Consensus 228 ~~l~~~d~~~~~~~~~l~~~-~~~~~~~~~~~~~~~SpDg~~l~~~~~~-~~~~~~i~~~d~~~g~~~~~~ 296 (723)
T 1xfd_A 228 ISLHVIGLNGPTHDLEMMPP-DDPRMREYYITMVKWATSTKVAVTWLNR-AQNVSILTLCDATTGVCTKKH 296 (723)
T ss_dssp EEEEEEESSSSCCCEECCCC-CCGGGSSEEEEEEEESSSSEEEEEEEET-TSCEEEEEEEETTTCCEEEEE
T ss_pred eEEEEEECCCCceeEEeeCC-ccCCCccceeEEEEEeCCCeEEEEEEcC-CCCeEEEEEEeCCCCcceEEE
Confidence 3788899887763 444310 0000 1111223334444355443221 122356899999888766553
No 264
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=66.93 E-value=71 Score=28.56 Aligned_cols=153 Identities=15% Similarity=0.222 Sum_probs=79.0
Q ss_pred eEEEEECCEEEEEcCcCCCCCCceeEEEEECCCCc-EEEeeec---CCCCCCCcceEEEE-ECCEEEEEcccCCCCcccC
Q 010115 150 HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC-WSVVEAK---GDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLN 224 (518)
Q Consensus 150 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~---~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~ 224 (518)
-+++..++++|+|=|. .+|+++..... ....... ..+|. ....+... .++++|+|=| +
T Consensus 34 DAi~~~~g~~~fFkg~--------~~Wr~~~~~~~~~~P~~I~~~wp~lp~-~IDAA~~~~~~~k~yfFkG--------~ 96 (218)
T 1gen_A 34 DGIAQIRGEIFFFKDR--------FIWRTVTPRDKPMGPLLVATFWPELPE-KIDAVYEAPQEEKAVFFAG--------N 96 (218)
T ss_dssp SEEEEETTEEEEEETT--------EEEEESSTTSCCEEEEEGGGTCTTSCS-CCSEEEEETTTTEEEEEET--------T
T ss_pred eEEEeCCCcEEEEECC--------EEEEEeCCCCccCCCEEHHHhcCCCCC-CccEEEEECCCCEEEEEeC--------C
Confidence 4556678999999774 47888765422 2211111 12342 33333222 2589999955 4
Q ss_pred cEEEEEcCCCc--E-EEeecCCCCCCC--CCCcEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEE-----EeecC
Q 010115 225 DLHMFDLKSLT--W-LPLHCTGTGPSP--RSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWT-----RIKIR 293 (518)
Q Consensus 225 ~~~~yd~~t~~--W-~~~~~~g~~p~~--r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~-----~v~~~ 293 (518)
..|+||-.+.. . ..+... .+|.. ... +|... .++.+|+|-| +..|+||..+++-. .+...
T Consensus 97 ~yW~y~~~~~~~gyPk~I~~~-g~p~~~~~ID-AAf~~~~~g~~YfFkG-------~~ywr~d~~~~~v~~gyPr~i~~~ 167 (218)
T 1gen_A 97 EYWIYSASTLERGYPKPLTSL-GLPPDVQRVD-AAFNWSKNKKTYIFAG-------DKFWRYNEVKKKMDPGFPKLIADA 167 (218)
T ss_dssp EEEEEETTEECTTCSEEGGGG-TCCTTCCCCS-EEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCCEEHHHH
T ss_pred EEEEEcCccccCCCCccHhhc-CCCCCcCCcc-EEEEEcCCCeEEEEEC-------CEEEEEECccccccCCCCcchhhc
Confidence 57888842100 0 111111 12221 222 33332 3445898876 36999998765321 11100
Q ss_pred CCCCCCCcceEEEEEC--CEEEEEcccCCCCCcCeEEEEECCCCc
Q 010115 294 GFHPSPRAGCCGVLCG--TKWYIAGGGSRKKRHAETLIFDILKGE 336 (518)
Q Consensus 294 ~~~p~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~v~~yd~~~~~ 336 (518)
-+..+..-.+|...+ +.+|++-| +..|+||..+..
T Consensus 168 -w~g~p~~idaAf~~~~~g~~YfFkg-------~~y~~~~~~~~~ 204 (218)
T 1gen_A 168 -WNAIPDNLDAVVDLQGGGHSYFFKG-------AYYLKLENQSLK 204 (218)
T ss_dssp -SSSCCSSCSEEEECTTTCEEEEEET-------TEEEEEETTEEE
T ss_pred -cCCCCCCCCEEEEEcCCCcEEEEEC-------CEEEEEECCcee
Confidence 001122234555544 89999977 458888876554
No 265
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=66.38 E-value=81 Score=29.04 Aligned_cols=178 Identities=10% Similarity=0.127 Sum_probs=89.5
Q ss_pred EECCEEEEEcCcCCCCCCCcEEEEEcC-CCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCce
Q 010115 96 VIGNKMIVVGGESGNGLLDDVQVLNFD-RFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRV 173 (518)
Q Consensus 96 ~~~~~lyv~GG~~~~~~~~~v~~yd~~-~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~ 173 (518)
+.++.||+... . ..+++||+. ...|...... . ...+.+.. ++.||+.. .. .
T Consensus 105 ~~~~~l~v~t~-~-----~~l~~~d~~g~~~~~~~~~~----------~----~~~~~~~~~~g~l~vgt-~~------~ 157 (330)
T 3hxj_A 105 IFEDILYVTSM-D-----GHLYAINTDGTEKWRFKTKK----------A----IYATPIVSEDGTIYVGS-ND------N 157 (330)
T ss_dssp EETTEEEEECT-T-----SEEEEECTTSCEEEEEECSS----------C----CCSCCEECTTSCEEEEC-TT------S
T ss_pred EECCEEEEEec-C-----CEEEEEcCCCCEEEEEcCCC----------c----eeeeeEEcCCCEEEEEc-CC------C
Confidence 34788887432 1 358889987 3356654321 0 12233444 56777642 21 2
Q ss_pred eEEEEECCCC-cEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCC-CcEEEeecCCCCCCCCC
Q 010115 174 SVWTFDTETE-CWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKS-LTWLPLHCTGTGPSPRS 250 (518)
Q Consensus 174 ~v~~yd~~t~-~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t-~~W~~~~~~g~~p~~r~ 250 (518)
.++.||+... .|.... +.... .+.+. .++.||+.. ..+++||... ..|+... +...
T Consensus 158 ~l~~~d~~g~~~~~~~~-----~~~~~-~~~~~d~~g~l~v~t---------~~l~~~d~~g~~~~~~~~-----~~~~- 216 (330)
T 3hxj_A 158 YLYAINPDGTEKWRFKT-----NDAIT-SAASIGKDGTIYFGS---------DKVYAINPDGTEKWNFYA-----GYWT- 216 (330)
T ss_dssp EEEEECTTSCEEEEEEC-----SSCCC-SCCEECTTCCEEEES---------SSEEEECTTSCEEEEECC-----SSCC-
T ss_pred EEEEECCCCCEeEEEec-----CCCce-eeeEEcCCCEEEEEe---------CEEEEECCCCcEEEEEcc-----CCcc-
Confidence 5899998822 265432 22222 22333 367777753 4588888432 3465542 1111
Q ss_pred CcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCe-EEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCCCcCeEE
Q 010115 251 NHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI-WTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETL 328 (518)
Q Consensus 251 ~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~-W~~v~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~ 328 (518)
..+.+...+..||+.. . -..+++||+.... |+.- ... ... .+.+.. ++.||+... . ..++
T Consensus 217 ~~~~~~~~~g~l~v~t-~-----~~gl~~~~~~g~~~~~~~-~~~----~~~-~~~~~~~~g~l~v~t~-~-----ggl~ 278 (330)
T 3hxj_A 217 VTRPAISEDGTIYVTS-L-----DGHLYAINPDGTEKWRFK-TGK----RIE-SSPVIGNTDTIYFGSY-D-----GHLY 278 (330)
T ss_dssp CSCCEECTTSCEEEEE-T-----TTEEEEECTTSCEEEEEE-CSS----CCC-SCCEECTTSCEEEECT-T-----CEEE
T ss_pred eeceEECCCCeEEEEc-C-----CCeEEEECCCCCEeEEee-CCC----Ccc-ccceEcCCCeEEEecC-C-----CCEE
Confidence 2233444443366643 1 1358888875544 4432 211 111 122333 677887532 1 2488
Q ss_pred EEECCCC-ceEE
Q 010115 329 IFDILKG-EWSV 339 (518)
Q Consensus 329 ~yd~~~~-~W~~ 339 (518)
+||++.. .|..
T Consensus 279 ~~d~~g~~~~~~ 290 (330)
T 3hxj_A 279 AINPDGTEKWNF 290 (330)
T ss_dssp EECTTSCEEEEE
T ss_pred EECCCCcEEEEE
Confidence 9997543 4554
No 266
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=66.32 E-value=1e+02 Score=30.04 Aligned_cols=155 Identities=15% Similarity=0.147 Sum_probs=79.7
Q ss_pred EEEEECCEEEEEcCcCCCCCCCcEEEEEcCCCcE--EEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCCC
Q 010115 93 AAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSW--TAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDS 168 (518)
Q Consensus 93 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W--~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~ 168 (518)
+++.+++++|+|=| +.+|+++.....- ..+...- ..+|... -++... ++++|+|=|.
T Consensus 185 Av~~~~g~~~fFkg-------~~~Wr~~~~~~~~~p~~I~~~w--------pgLP~~i-DAa~~~~~~g~~~fFkg~--- 245 (365)
T 3ba0_A 185 AVTTVGNKIFFFKD-------RFFWLKVSERPKTSVNLISSLW--------PTLPSGI-EAAYEIEARNQVFLFKDD--- 245 (365)
T ss_dssp CEEEETTEEEEEET-------TEEEECCSSCCCCCEEEHHHHC--------SSCCSSC-CEEEEEGGGTEEEEEETT---
T ss_pred eEEEcCCeEEEEeC-------CEEEEEcCCCccCCccchhhhc--------cCCCCCc-cEEEEecCCCEEEEEeCC---
Confidence 45567899999987 3456665433211 1111110 0122222 233333 7899999664
Q ss_pred CCCceeEEEEECCCCc--E-EEeeecCCCCCC--CcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCCcEEE----
Q 010115 169 GSDRVSVWTFDTETEC--W-SVVEAKGDIPVA--RSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP---- 238 (518)
Q Consensus 169 ~~~~~~v~~yd~~t~~--W-~~~~~~~~~p~~--r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~---- 238 (518)
.+|+|+..... + +.+... .+|.. ....+... .++++|+|-| +..|+||..+.+-..
T Consensus 246 -----~yWr~~~~~~~~gyPk~I~~~-GlP~~~~~IDAA~~~~~~~~~yfFkG--------~~yw~yd~~~~~v~~gyPk 311 (365)
T 3ba0_A 246 -----KYWLISNLRPEPNYPKSIHSF-GFPNFVKKIDAAVFNPRFYRTYFFVD--------NQYWRYDERRQMMDPGYPK 311 (365)
T ss_dssp -----EEEECSTTSCTTTCSEETTTT-TCCTTCCCCCEEEEETTTTEEEEEET--------TEEEEEETTTTEECSSCCC
T ss_pred -----EEEEEcCCcccCCCCceeeec-cCCCCCCCcCEEEEeCCCCEEEEEEC--------CEEEEEeCCcceecCCCCc
Confidence 47888754321 1 122211 13432 23322222 2479999955 458999987654321
Q ss_pred -eec-CCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEE
Q 010115 239 -LHC-TGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR 289 (518)
Q Consensus 239 -~~~-~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 289 (518)
+.. -..+| ..--++....+..+|+|-| +..|+||..+.+-..
T Consensus 312 ~I~~~f~g~p--~~iDaA~~~~~g~~YfFkg-------~~ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 312 LITKNFQGIG--PKIDAVFYSKNKYYYFFQG-------SNQFEYDFLLQRITK 355 (365)
T ss_dssp CHHHHSTTCC--SSCSEEEEETTTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred chhhcCCCCC--CccceeeEecCCcEEEEeC-------CEEEEEECCccEEec
Confidence 100 00122 2233444452334888866 369999998876554
No 267
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=64.68 E-value=62 Score=28.99 Aligned_cols=106 Identities=25% Similarity=0.386 Sum_probs=56.0
Q ss_pred EEEEECCEEEEEcCcCCCCCCceeEEEEECCCC-cE-----EEeeecCCCCCC----CcceEEEE-ECCEEEEEcccCCC
Q 010115 151 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTETE-CW-----SVVEAKGDIPVA----RSGHTVVR-ASSVLILFGGEDGK 219 (518)
Q Consensus 151 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~-~W-----~~~~~~~~~p~~----r~~~~~~~-~~~~iyv~GG~~~~ 219 (518)
++...++++|+|=|. .+|+|+..++ +- +.+...-.+|.. +...+... .++++|+|-|
T Consensus 67 AA~~~~~~~yfFkG~--------~yw~~~~~~~~~~~~gyPk~i~~~~G~p~~~~~~~IDAA~~~~~~gk~yfFkG---- 134 (219)
T 1hxn_A 67 AAFSWEDKLYLIQDT--------KVYVFLTKGGYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAG---- 134 (219)
T ss_dssp EEEEETTEEEEEETT--------EEEEEECSSSCEECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEET----
T ss_pred EEEEECCcEEEecCC--------EEEEEeCCCCceecCCCCeehhhccCCCCcccccccceeEEecCCCEEEEEeC----
Confidence 344458999999664 5899987532 11 111100014433 23322222 2579999965
Q ss_pred CcccCcEEEEEcCCC---cEEEeecCCCCCCCCCCcEEEE-----------ECCcEEEEEcCCCCCCCCCcEEEEEcCC
Q 010115 220 RRKLNDLHMFDLKSL---TWLPLHCTGTGPSPRSNHVAAL-----------YDDKNLLIFGGSSKSKTLNDLYSLDFET 284 (518)
Q Consensus 220 ~~~~~~~~~yd~~t~---~W~~~~~~g~~p~~r~~~~~~~-----------~~~~~lyv~GG~~~~~~~~~v~~yd~~~ 284 (518)
+..|+||..+. .|.... .+......+... .++. +|+|-|. ..|+||..+
T Consensus 135 ----~~ywr~d~~~~P~~i~~~~~----g~p~~vdAa~~~~~~~~~~~~~~~~~~-~YFFkg~-------~y~r~~~~~ 197 (219)
T 1hxn_A 135 ----RRLWWLDLKSGAQATWTELP----WPHEKVDGALCMEKPLGPNSCSTSGPN-LYLIHGP-------NLYCYRHVD 197 (219)
T ss_dssp ----TEEEEEEGGGGGGCCCEEEC----CSCSCCSEEEEESSCSSSCCSCSSSCE-EEEEETT-------EEEEESSHH
T ss_pred ----CEEEEEeCCCCceEhhhcCC----CCCCCcCEEEEccccccccceeccCCe-EEEEECC-------EEEEEeCCc
Confidence 35789997542 343332 222333333321 2344 8888763 678887643
No 268
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=64.55 E-value=90 Score=28.90 Aligned_cols=218 Identities=10% Similarity=0.006 Sum_probs=108.5
Q ss_pred eEEEEE-CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCcccCcEE
Q 010115 150 HSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLH 227 (518)
Q Consensus 150 ~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~ 227 (518)
..++.. ++.||+.--. ...|+++|+.+.. ..... .+ ..-+.++.. ++++|+....... ..++
T Consensus 35 egia~~~~g~lyv~d~~------~~~I~~~d~~g~~-~~~~~---~~--~~p~gia~~~dG~l~vad~~~~~----~~v~ 98 (306)
T 2p4o_A 35 ENLASAPDGTIFVTNHE------VGEIVSITPDGNQ-QIHAT---VE--GKVSGLAFTSNGDLVATGWNADS----IPVV 98 (306)
T ss_dssp EEEEECTTSCEEEEETT------TTEEEEECTTCCE-EEEEE---CS--SEEEEEEECTTSCEEEEEECTTS----CEEE
T ss_pred ceEEECCCCCEEEEeCC------CCeEEEECCCCce-EEEEe---CC--CCceeEEEcCCCcEEEEeccCCc----ceEE
Confidence 334432 5678887432 2368999988753 33322 22 123344443 5678886432111 2488
Q ss_pred EEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEE--eecCCC--CCCC--Cc
Q 010115 228 MFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR--IKIRGF--HPSP--RA 301 (518)
Q Consensus 228 ~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~--v~~~~~--~p~~--r~ 301 (518)
+||+.+.+.+.+. ..+..+.....+...+..+|+..- ....+|++|+.+..-+. ...... .+.. ..
T Consensus 99 ~~d~~~g~~~~~~---~~~~~~~~~g~~~~~~~~~~v~d~-----~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~ 170 (306)
T 2p4o_A 99 SLVKSDGTVETLL---TLPDAIFLNGITPLSDTQYLTADS-----YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA 170 (306)
T ss_dssp EEECTTSCEEEEE---ECTTCSCEEEEEESSSSEEEEEET-----TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred EEcCCCCeEEEEE---eCCCccccCcccccCCCcEEEEEC-----CCCeEEEEeCCCCcEeEEEECCccccccccCCCCc
Confidence 8998888887765 334444444555555665777532 13479999987642211 111000 0111 11
Q ss_pred ceEEEEECCEEEEEcccCCCCCcCeEEEEECCC-Cce---EEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCC
Q 010115 302 GCCGVLCGTKWYIAGGGSRKKRHAETLIFDILK-GEW---SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP 377 (518)
Q Consensus 302 ~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~-~~W---~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~ 377 (518)
..+....++.||+.--. .+.+++||++. .+. +.+... ..-..+ ++.. ++.||+.-..
T Consensus 171 pngis~dg~~lyv~d~~-----~~~I~~~~~~~~g~~~~~~~~~~~-------~~P~gi-~vd~--dG~l~va~~~---- 231 (306)
T 2p4o_A 171 ANGLKRFGNFLYVSNTE-----KMLLLRIPVDSTDKPGEPEIFVEQ-------TNIDDF-AFDV--EGNLYGATHI---- 231 (306)
T ss_dssp EEEEEEETTEEEEEETT-----TTEEEEEEBCTTSCBCCCEEEEES-------CCCSSE-EEBT--TCCEEEECBT----
T ss_pred CCCcCcCCCEEEEEeCC-----CCEEEEEEeCCCCCCCccEEEecc-------CCCCCe-EECC--CCCEEEEeCC----
Confidence 12232335688887532 25699999875 222 111110 011122 2222 2346665432
Q ss_pred CCcEEEEEcccCCccccccCCCCCCCCceEeecC
Q 010115 378 SNQVEVLSIEKNESSMGRRSTPNAKGPGQLLFEK 411 (518)
Q Consensus 378 ~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~vfgG 411 (518)
.+.|.+||+.... ............|..+.|+|
T Consensus 232 ~~~V~~~~~~G~~-~~~~~~~~~~~~p~~~a~~g 264 (306)
T 2p4o_A 232 YNSVVRIAPDRST-TIIAQAEQGVIGSTAVAFGQ 264 (306)
T ss_dssp TCCEEEECTTCCE-EEEECGGGTCTTEEEEEECC
T ss_pred CCeEEEECCCCCE-EEEeecccccCCceEEEEec
Confidence 2468899876322 11100111125567777876
No 269
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=64.03 E-value=93 Score=28.91 Aligned_cols=185 Identities=13% Similarity=0.096 Sum_probs=95.2
Q ss_pred CCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-C-CEEEEEcCcCCCCCCceeEEEEECCCCcEEEeee
Q 010115 113 LDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-G-KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEA 190 (518)
Q Consensus 113 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 190 (518)
...++++|..+..-..+.. ....... + ..|++..... +.....+|.+|+.+++...+..
T Consensus 42 ~~~l~~~d~~~~~~~~l~~-----------------~~~~~~SpDg~~la~~~~~~--~~~~~~l~~~~~~~g~~~~l~~ 102 (347)
T 2gop_A 42 ENTIVIENLKNNARRFIEN-----------------ATMPRISPDGKKIAFMRANE--EKKVSEIWVADLETLSSKKILE 102 (347)
T ss_dssp EEEEEEEETTTCCEEEEES-----------------CEEEEECTTSSEEEEEEEET--TTTEEEEEEEETTTTEEEEEEE
T ss_pred cceEEEEeCCCCceEEccc-----------------CCCeEECCCCCEEEEEEecc--CCCcceEEEEECCCCceEEEEc
Confidence 4578889988876544411 1111111 3 3444433221 1123469999999988777664
Q ss_pred cCCCCCCCcceEEEEE-CCEEEEEcccCC----------------CC-----cccCcEEEEEcCCCcE-EEeecCCCCCC
Q 010115 191 KGDIPVARSGHTVVRA-SSVLILFGGEDG----------------KR-----RKLNDLHMFDLKSLTW-LPLHCTGTGPS 247 (518)
Q Consensus 191 ~~~~p~~r~~~~~~~~-~~~iyv~GG~~~----------------~~-----~~~~~~~~yd~~t~~W-~~~~~~g~~p~ 247 (518)
.+. ....... +++.+++..... .+ .....++++|+.+.+. ..+. . +
T Consensus 103 ---~~~---~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~---~-~- 171 (347)
T 2gop_A 103 ---AKN---IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFE---K-P- 171 (347)
T ss_dssp ---ESE---EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEE---E-E-
T ss_pred ---CCC---ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeec---C-C-
Confidence 222 2222222 444333433210 00 0135699999998887 6665 2 2
Q ss_pred CCCCcEEEEECCcEEEEEcCCCCCC---C-CCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCE-EEEEcccCC--
Q 010115 248 PRSNHVAALYDDKNLLIFGGSSKSK---T-LNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTK-WYIAGGGSR-- 320 (518)
Q Consensus 248 ~r~~~~~~~~~~~~lyv~GG~~~~~---~-~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~-iyv~GG~~~-- 320 (518)
.....+...+. +++.+...... . ..++|.+| +.+++.+... .......-+++ |++.+....
T Consensus 172 --~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-------~~~~~~spdg~~l~~~~~~~~~~ 239 (347)
T 2gop_A 172 --RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-------VSFYAVDSDGERILLYGKPEKKY 239 (347)
T ss_dssp --TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-------ESEEEEEECSSCEEEEECCSSSC
T ss_pred --CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEeccC-------cceeeECCCCCEEEEEEccccCC
Confidence 33344555666 55555333211 2 45799999 7777776531 11122233554 444432221
Q ss_pred CCCcCeEEEEECCCCceEEee
Q 010115 321 KKRHAETLIFDILKGEWSVAI 341 (518)
Q Consensus 321 ~~~~~~v~~yd~~~~~W~~~~ 341 (518)
......++.+| +.++..+.
T Consensus 240 ~~~~~~l~~~d--~~~~~~l~ 258 (347)
T 2gop_A 240 MSEHNKLYIYD--GKEVMGIL 258 (347)
T ss_dssp CCSSCEEEEEC--SSCEEESS
T ss_pred ccccceEEEEC--CCceEecc
Confidence 11246789998 66676654
No 270
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=63.78 E-value=73 Score=34.05 Aligned_cols=219 Identities=12% Similarity=0.072 Sum_probs=108.4
Q ss_pred cEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCceeEEEEECCCC----cEEEe
Q 010115 115 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETE----CWSVV 188 (518)
Q Consensus 115 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~----~W~~~ 188 (518)
.+.++++.+.....+... ...-++++.. ++.||+.--. ...|+++++.+. .-..+
T Consensus 387 ~I~~id~~~~~~~~~~~~-------------~~~p~gla~d~~~~~Ly~sD~~------~~~I~~~~~~g~~~~~~~~~~ 447 (699)
T 1n7d_A 387 EVRKMTLDRSEYTSLIPN-------------LRNVVALDTEVASNRIYWSDLS------QRMICSTQLDRAHGVSSYDTV 447 (699)
T ss_dssp C-CEECTTSCCEECCSCC-------------CTTCCCCEEETTTTEEEECCTT------TTSBEEEESCCCCC-CCCCCB
T ss_pred ceEEEeCCCCcceeeecc-------------CcceEEEccccccCeEEEEecC------CCeEEEEecCCCCCCcceEEE
Confidence 566677776665544321 1122344443 5788886322 235888888751 11111
Q ss_pred eecCCCCCCCcceEEEE--ECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEE-CCcEEEEE
Q 010115 189 EAKGDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIF 265 (518)
Q Consensus 189 ~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv~ 265 (518)
.. ..+.. -.++++ .++.||+.-. ..+.|+++++....-+.+... .+..|+ .+++. .++.||+.
T Consensus 448 i~-~~~~~---P~glavD~~~g~LY~tD~------~~~~I~v~d~dg~~~~~l~~~-~~~~P~---giavDp~~g~ly~t 513 (699)
T 1n7d_A 448 IS-RDIQA---PDGLAVDWIHSNIYWTDS------VLGTVSVADTKGVKRKTLFRE-QGSKPR---AIVVDPVHGFMYWT 513 (699)
T ss_dssp CC-SCC-----CCCEECCCSSSBCEECCT------TTSCEEEEBSSSCCEEEECCC-SSCCCC---CEECCSSSSCCEEC
T ss_pred Ee-CCCCC---cceEEEEeeCCcEEEEec------cCCeEEEEecCCCceEEEEeC-CCCCcc---eEEEccCCCcEEEc
Confidence 10 01111 123333 4678888621 235689999877655444311 222232 23332 23337765
Q ss_pred cCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCCCceEEeecC
Q 010115 266 GGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITS 343 (518)
Q Consensus 266 GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 343 (518)
.-. ....|+++++....-+.+... ....| .++++. +++||+.-.. ...|+++|+....-+.+...
T Consensus 514 d~~----~~~~I~~~~~dG~~~~~l~~~-~l~~P---nGlavd~~~~~LY~aD~~-----~~~I~~~d~dG~~~~~~~~~ 580 (699)
T 1n7d_A 514 DWG----TPAKIKKGGLNGVDIYSLVTE-NIQWP---NGITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILED 580 (699)
T ss_dssp CCS----SSCCEEBCCSSSCCCCEESCS-SCSSC---CCEEECTTTCCEEEEETT-----TTEEEEECSSSSCCEEECCC
T ss_pred ccC----CCCeEEEEeCCCCCeeEEEeC-CCCCc---cEEEEeccCCEEEEEecC-----CCeEEEEccCCCceEEEEec
Confidence 311 124688888765443333221 11111 133332 5789998643 25689999876554444321
Q ss_pred CCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 344 PSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 344 ~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
.. .....+++++.. +.||+.-.. .+.|.++|+.+.+
T Consensus 581 ~~---~~~~P~glavd~----~~lywtd~~----~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 581 EK---RLAHPFSLAVFE----DKVFWTDII----NEAIFSANRLTGS 616 (699)
T ss_dssp SS---SCSSCCCCEEET----TEEEEECST----TTCEEEEETTTEE
T ss_pred CC---cCCCceEeEEEC----CEEEEEeCC----CCeEEEEEccCCC
Confidence 11 112234554433 468876532 3478999876543
No 271
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=62.73 E-value=86 Score=33.71 Aligned_cols=151 Identities=13% Similarity=0.144 Sum_probs=79.9
Q ss_pred CCcEEEEEcCCC--cE--EEcccccccCCCCCCCCCCCccceEEE-EECCEEEEEcCcCCCCCCceeEEEEECCC-CcEE
Q 010115 113 LDDVQVLNFDRF--SW--TAASSKLYLSPSSLPLKIPACRGHSLI-SWGKKVLLVGGKTDSGSDRVSVWTFDTET-ECWS 186 (518)
Q Consensus 113 ~~~v~~yd~~~~--~W--~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~v~~yd~~t-~~W~ 186 (518)
.++++++|+.+. .+ +.+... . ....++.. ..++.||+..-... .....++.+|..+ ..|+
T Consensus 294 ~~~l~~~d~~~~~~~~~~~~l~~~----------~--~~~~~s~~~~~g~~l~~~t~~~~--a~~~~L~~~d~~~~~~~~ 359 (751)
T 2xe4_A 294 TAEVHLLDLRKGNAHNTLEIVRPR----------E--KGVRYDVQMHGTSHLVILTNEGG--AVNHKLLIAPRGQPSDWS 359 (751)
T ss_dssp CEEEEEEESSSCTTCCCEEESSCC----------C--TTCCEEEEEETTTEEEEEECTTT--CTTCEEEEEETTSTTCCC
T ss_pred CceEEEEECCCCCCCceeEEeecC----------C--CCceEEEeeeeCCEEEEEeCCCC--CCCcEEEEEcCCCcccce
Confidence 467888888764 45 544331 0 00112222 23788888865431 1234799999886 6887
Q ss_pred E-eeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEc-------CCCc-EEEeecCCCCCCCCCCcEEEE-
Q 010115 187 V-VEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDL-------KSLT-WLPLHCTGTGPSPRSNHVAAL- 256 (518)
Q Consensus 187 ~-~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~-------~t~~-W~~~~~~g~~p~~r~~~~~~~- 256 (518)
. +.+. .....-......++.|++..-.+. ...++++|+ .+.+ -+.+. +|.. .+....
T Consensus 360 ~~li~~---~~~~~l~~~~~~~~~lv~~~~~~g----~~~l~~~dl~~~~~~~~~g~~~~~l~----l~~~--~~~~~~~ 426 (751)
T 2xe4_A 360 HVLVDH---SEDVFMESIAVRSNYLVVAGRRAG----LTRIWTMMADSQDGVFKAGTGLREVV----MEEP--IFTVHLV 426 (751)
T ss_dssp CEEECC---CSSEEEEEEEECSSEEEEEEEETT----EEEEEEEECCTTTSCCCTTTCCEECC----CCCS--SCEEEEC
T ss_pred eeEECC---CCCcEEEEEEEECCEEEEEEEeCC----EEEEEEEecccccccccCCccceEEC----CCCc--eeEEEec
Confidence 6 5431 111111233345677777654443 356889996 3444 44442 3322 222222
Q ss_pred ------ECC-cEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecC
Q 010115 257 ------YDD-KNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIR 293 (518)
Q Consensus 257 ------~~~-~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~ 293 (518)
.++ ..++.+... .....++.||+.+++.+.+...
T Consensus 427 ~~~~~~~~~~~l~~~~ss~---~~P~~~~~~d~~~~~~~~l~~~ 467 (751)
T 2xe4_A 427 ESQMLEYEEPTFRMEYSSL---ATPNTWFDVSPQDHSRTAVKVR 467 (751)
T ss_dssp GGGCCCTTCSCEEEEEEET---TEEEEEEEECTTTCCEEEEEEC
T ss_pred cCcccCCCCCEEEEEEeCC---CCCCEEEEEECCCCcEEEEecc
Confidence 123 333333332 2235799999988887777643
No 272
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=61.62 E-value=1e+02 Score=28.56 Aligned_cols=147 Identities=12% Similarity=0.073 Sum_probs=74.3
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCC
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~ 234 (518)
++..++.|+.+. .+..||+.+++-...-. .... .-.++.. -++.+++.|+.+.. +.+||+...
T Consensus 76 dg~~l~s~s~D~------~v~~wd~~~~~~~~~~~---~h~~-~v~~~~~~~~~~~l~s~s~D~~------i~vwd~~~~ 139 (319)
T 3frx_A 76 DGAYALSASWDK------TLRLWDVATGETYQRFV---GHKS-DVMSVDIDKKASMIISGSRDKT------IKVWTIKGQ 139 (319)
T ss_dssp TSSEEEEEETTS------EEEEEETTTTEEEEEEE---CCSS-CEEEEEECTTSCEEEEEETTSC------EEEEETTSC
T ss_pred CCCEEEEEeCCC------EEEEEECCCCCeeEEEc---cCCC-cEEEEEEcCCCCEEEEEeCCCe------EEEEECCCC
Confidence 566677777643 68889998876332211 0111 1112222 24567777776543 677887655
Q ss_pred cEEEeecCCCCCCCCCCcEEEEEC------CcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE
Q 010115 235 TWLPLHCTGTGPSPRSNHVAALYD------DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC 308 (518)
Q Consensus 235 ~W~~~~~~g~~p~~r~~~~~~~~~------~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~ 308 (518)
.-..+. +. ......+.... +..+++.|+.++ .+..||+.+.+-...-. + ....-.+++..
T Consensus 140 ~~~~~~--~h---~~~v~~~~~~~~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~~~~~~~~-~---h~~~v~~~~~s 205 (319)
T 3frx_A 140 CLATLL--GH---NDWVSQVRVVPNEKADDDSVTIISAGNDK-----MVKAWNLNQFQIEADFI-G---HNSNINTLTAS 205 (319)
T ss_dssp EEEEEC--CC---SSCEEEEEECCC------CCEEEEEETTS-----CEEEEETTTTEEEEEEC-C---CCSCEEEEEEC
T ss_pred eEEEEe--cc---CCcEEEEEEccCCCCCCCccEEEEEeCCC-----EEEEEECCcchhheeec-C---CCCcEEEEEEc
Confidence 433332 11 00111122221 222566666544 48889987765332211 1 11111122222
Q ss_pred -CCEEEEEcccCCCCCcCeEEEEECCCCce
Q 010115 309 -GTKWYIAGGGSRKKRHAETLIFDILKGEW 337 (518)
Q Consensus 309 -~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 337 (518)
++++++.|+.++ .+.++|+.+.+-
T Consensus 206 p~g~~l~s~~~dg-----~i~iwd~~~~~~ 230 (319)
T 3frx_A 206 PDGTLIASAGKDG-----EIMLWNLAAKKA 230 (319)
T ss_dssp TTSSEEEEEETTC-----EEEEEETTTTEE
T ss_pred CCCCEEEEEeCCC-----eEEEEECCCCcE
Confidence 677788887654 488999887653
No 273
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=59.88 E-value=1.9e+02 Score=31.11 Aligned_cols=242 Identities=10% Similarity=0.085 Sum_probs=118.2
Q ss_pred CCCCeEEeccCCCCCCCccce--EEEEE--C-CEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCC-C
Q 010115 72 NSENWMVLSIAGDKPIPRFNH--AAAVI--G-NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKI-P 145 (518)
Q Consensus 72 ~~~~W~~l~~~~~~p~~R~~~--~~~~~--~-~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~ 145 (518)
.+.+|+.+... +.++ ++++. + +.+|+-+- . ..+++-+-...+|+.+...... ...+... .
T Consensus 8 ~~~~~~~~~~g------~~g~i~~i~~~p~~~~~~y~~~~-~-----ggv~~S~DgG~tW~~~~~~~~~--~~~~~~~~~ 73 (763)
T 3a0f_A 8 VTAELKPVTIS------GGGFISGLVAHPTEKDLIYARTD-I-----GGTYRWNAAKWEWEPITDFIIN--NALAGNGAN 73 (763)
T ss_dssp --CEEEECSCC------BCSCEEEEEECSSSTTCEEEEES-S-----SCEEEEETTTTEEEESCTTCBT--TCSSSCCCC
T ss_pred EEEEEEeeEec------CCCceeEEEeCCCCCCEEEEEec-c-----CcEEEECCCCCCeeECccCccc--cccCCCccc
Confidence 56788888632 3333 33332 2 34666542 1 2477777777899998752100 0000000 1
Q ss_pred CccceEEEEE---CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCC---CCCc-ceEEEEE---CCEEEEEcc
Q 010115 146 ACRGHSLISW---GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIP---VARS-GHTVVRA---SSVLILFGG 215 (518)
Q Consensus 146 ~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p---~~r~-~~~~~~~---~~~iyv~GG 215 (518)
....+++++. .+.+|+..|..........+++-+-.-.+|+++......+ ..|. ...+++. .+.+|+.+
T Consensus 74 ~~~~~~ia~dp~~~~~~~~~~g~~~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~- 152 (763)
T 3a0f_A 74 LLGTESIALDPHNPDRLYLAQGDYVQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGS- 152 (763)
T ss_dssp CCSEEEEECCTTCTTCEEEEECSCTTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEEC-
T ss_pred ccceeEEEECCCCCCEEEEEecccccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEe-
Confidence 1122334432 3688887653111111234665544567899987311111 1232 1344443 36777753
Q ss_pred cCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCC---CCcEEEEE---CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEE
Q 010115 216 EDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPR---SNHVAALY---DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR 289 (518)
Q Consensus 216 ~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r---~~~~~~~~---~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 289 (518)
.. ..+++=+=.-.+|+++. .++... .......+ +...+|+.....+ .+++-+-...+|+.
T Consensus 153 ~~------~~l~~S~DgG~TW~~~~---~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~g-----~v~~S~DgG~tW~~ 218 (763)
T 3a0f_A 153 RT------QGLWRSTDRAQTWSRMN---QLPDSSTYGIGIISVIFDPKNVGTAYVASHAVG-----GLWVTWDGGANWSQ 218 (763)
T ss_dssp SS------SCEEEESSTTSSCEECT---TSCCCSCTTTCEEEEEECSSSTTCEEEEESSTT-----CEEEESSSSSSCEE
T ss_pred CC------CcEEEECCCCcCccccc---cCcccCCCccceEEEEECCCCCCEEEEEEeCCC-----eEEEECCCCCCccc
Confidence 11 23444333346899986 344321 22222222 2223666543211 35555555678999
Q ss_pred eecCCCCC-----------------CCCcceEEEEE-CCEEEEEcccCC---CCCcCeEEEEECCCCceEEeec
Q 010115 290 IKIRGFHP-----------------SPRAGCCGVLC-GTKWYIAGGGSR---KKRHAETLIFDILKGEWSVAIT 342 (518)
Q Consensus 290 v~~~~~~p-----------------~~r~~~~~~~~-~~~iyv~GG~~~---~~~~~~v~~yd~~~~~W~~~~~ 342 (518)
+...+... .++..+.+++. ++.+|+...... ......+++.+-...+|+.+..
T Consensus 219 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~g~v~rS~D~G~tW~~~~~ 292 (763)
T 3a0f_A 219 VGGQPTQWSDWTKSIVAASGTAIQSSGPLPIKIALGKNGRLYITYSDAPGPWGVLYGEVWSYDPTNGNWKHITP 292 (763)
T ss_dssp CTTCCCSCCHHHHHHHHHHCCCCSSSSCEEEEEEECTTSCEEEEEESSCSSSCCCCEEEEEEETTTTEEEECCT
T ss_pred cCCCccccccccccccccccccccCCCCcceeEEECCCCcEEEEeccCCCCCCCcceeEEEEeCCCCceEECCC
Confidence 86431100 23344444333 678888743211 1123568999999999999763
No 274
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=59.41 E-value=1.4e+02 Score=29.28 Aligned_cols=20 Identities=20% Similarity=0.198 Sum_probs=13.5
Q ss_pred CCCcEEEEECCcEEEEEcCC
Q 010115 249 RSNHVAALYDDKNLLIFGGS 268 (518)
Q Consensus 249 r~~~~~~~~~~~~lyv~GG~ 268 (518)
-..|++++..+..+|.+|-.
T Consensus 233 G~~ht~~l~~~G~v~~wG~n 252 (406)
T 4d9s_A 233 GWRHTISVSYSGALYTYGWS 252 (406)
T ss_dssp CSSEEEEEETTCCEEEEECC
T ss_pred CCCcEEEEcCCCCEEEeeCC
Confidence 34667777666559999843
No 275
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=59.35 E-value=1e+02 Score=27.72 Aligned_cols=195 Identities=9% Similarity=-0.038 Sum_probs=104.9
Q ss_pred eEEEEE--CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCcccCc
Q 010115 150 HSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLND 225 (518)
Q Consensus 150 ~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 225 (518)
++++.. ++.||+.-.. ...++++++.+..-..+... .+ ..-+.+++. ++.||+.-.. .+.
T Consensus 39 ~gi~~d~~~~~ly~~d~~------~~~I~~~~~~g~~~~~~~~~-~~---~~p~~ia~d~~~~~lyv~d~~------~~~ 102 (267)
T 1npe_A 39 IGLAFDCVDKVVYWTDIS------EPSIGRASLHGGEPTTIIRQ-DL---GSPEGIALDHLGRTIFWTDSQ------LDR 102 (267)
T ss_dssp EEEEEETTTTEEEEEETT------TTEEEEEESSSCCCEEEECT-TC---CCEEEEEEETTTTEEEEEETT------TTE
T ss_pred EEEEEecCCCEEEEEECC------CCEEEEEecCCCCcEEEEEC-CC---CCccEEEEEecCCeEEEEECC------CCE
Confidence 455554 5789987543 23699999987654433221 11 122445554 5799987432 356
Q ss_pred EEEEEcCCCcEEEeecCCCCCCCCCCcEEEEEC-CcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceE
Q 010115 226 LHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCC 304 (518)
Q Consensus 226 ~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~ 304 (518)
++++|+....-+.+... .+..| ..+++.. ++.||+..... ..+.|++++++...-+.+... .. ..-.+
T Consensus 103 I~~~~~~g~~~~~~~~~-~~~~P---~~i~vd~~~g~lyv~~~~~---~~~~I~~~~~dg~~~~~~~~~---~~-~~P~g 171 (267)
T 1npe_A 103 IEVAKMDGTQRRVLFDT-GLVNP---RGIVTDPVRGNLYWTDWNR---DNPKIETSHMDGTNRRILAQD---NL-GLPNG 171 (267)
T ss_dssp EEEEETTSCSCEEEECS-SCSSE---EEEEEETTTTEEEEEECCS---SSCEEEEEETTSCCCEEEECT---TC-SCEEE
T ss_pred EEEEEcCCCCEEEEEEC-CCCCc---cEEEEeeCCCEEEEEECCC---CCcEEEEEecCCCCcEEEEEC---CC-CCCcE
Confidence 88999875443333211 11122 2344443 45588875321 135789999876543333321 11 11223
Q ss_pred EEEE--CCEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEE
Q 010115 305 GVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVE 382 (518)
Q Consensus 305 ~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~ 382 (518)
.++. +++||+.--.. +.++++|+.+..-..+.. ... .-++++ +. .+.||+.-.. .+.|.
T Consensus 172 ia~d~~~~~lyv~d~~~-----~~I~~~~~~g~~~~~~~~-~~~-----~P~gi~-~d---~~~lyva~~~----~~~v~ 232 (267)
T 1npe_A 172 LTFDAFSSQLCWVDAGT-----HRAECLNPAQPGRRKVLE-GLQ-----YPFAVT-SY---GKNLYYTDWK----TNSVI 232 (267)
T ss_dssp EEEETTTTEEEEEETTT-----TEEEEEETTEEEEEEEEE-CCC-----SEEEEE-EE---TTEEEEEETT----TTEEE
T ss_pred EEEcCCCCEEEEEECCC-----CEEEEEecCCCceEEEec-CCC-----CceEEE-Ee---CCEEEEEECC----CCeEE
Confidence 3433 56899985432 569999998654333321 111 113333 32 3678875432 24799
Q ss_pred EEEcccCC
Q 010115 383 VLSIEKNE 390 (518)
Q Consensus 383 ~yd~~~~~ 390 (518)
++|+.+.+
T Consensus 233 ~~d~~~g~ 240 (267)
T 1npe_A 233 AMDLAISK 240 (267)
T ss_dssp EEETTTTE
T ss_pred EEeCCCCC
Confidence 99988765
No 276
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=58.99 E-value=1.3e+02 Score=29.06 Aligned_cols=194 Identities=8% Similarity=-0.021 Sum_probs=105.6
Q ss_pred eEEEEE--CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCC
Q 010115 92 HAAAVI--GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTD 167 (518)
Q Consensus 92 ~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~ 167 (518)
.+++.. ++.||+.--. ...++++++.....+.+.... +.. -.++++. ++.||+.-...
T Consensus 119 ~gl~~d~~~~~ly~~D~~-----~~~I~r~~~~g~~~~~~~~~~--------~~~----p~glavd~~~g~lY~~d~~~- 180 (386)
T 3v65_B 119 IALDFHHRRELVFWSDVT-----LDRILRANLNGSNVEEVVSTG--------LES----PGGLAVDWVHDKLYWTDSGT- 180 (386)
T ss_dssp EEEEEETTTTEEEEEETT-----TTEEEEEETTSCCEEEEECSS--------CSC----CCCEEEETTTTEEEEEETTT-
T ss_pred EEEEEecCCCeEEEEeCC-----CCcEEEEecCCCCcEEEEeCC--------CCC----ccEEEEEeCCCeEEEEcCCC-
Confidence 344444 4778887432 256899999887665553311 111 1234443 78999874432
Q ss_pred CCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCC
Q 010115 168 SGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTG 245 (518)
Q Consensus 168 ~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~ 245 (518)
..++++++....-+.+.. ..+..| ..+++. ++.||+.--.. ...++++++....-+.+... .+
T Consensus 181 -----~~I~~~~~dg~~~~~l~~-~~l~~P---~giavdp~~g~ly~td~~~-----~~~I~r~~~dG~~~~~~~~~-~~ 245 (386)
T 3v65_B 181 -----SRIEVANLDGAHRKVLLW-QSLEKP---RAIALHPMEGTIYWTDWGN-----TPRIEASSMDGSGRRIIADT-HL 245 (386)
T ss_dssp -----TEEEECBTTSCSCEEEEC-SSCSCE---EEEEEETTTTEEEEEECSS-----SCEEEEEETTSCSCEEEECS-SC
T ss_pred -----CeEEEEeCCCCceEEeec-CCCCCC---cEEEEEcCCCeEEEeccCC-----CCEEEEEeCCCCCcEEEEEC-CC
Confidence 368888887655443332 122222 334444 67899873211 35699999876544443211 11
Q ss_pred CCCCCCcEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCCCc
Q 010115 246 PSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRH 324 (518)
Q Consensus 246 p~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 324 (518)
..| .+.++- .++.||+.-.. .+.|+++|++...-+.+...+ .+. -.++++.++.||+..-. .
T Consensus 246 ~~P---nGlavd~~~~~lY~aD~~-----~~~I~~~d~dG~~~~~~~~~~-~~~---P~giav~~~~ly~td~~-----~ 308 (386)
T 3v65_B 246 FWP---NGLTIDYAGRRMYWVDAK-----HHVIERANLDGSHRKAVISQG-LPH---PFAITVFEDSLYWTDWH-----T 308 (386)
T ss_dssp SCE---EEEEEEGGGTEEEEEETT-----TTEEEEECTTSCSCEEEECSS-CSS---EEEEEEETTEEEEEETT-----T
T ss_pred CCe---eeEEEeCCCCEEEEEECC-----CCEEEEEeCCCCeeEEEEECC-CCC---ceEEEEECCEEEEeeCC-----C
Confidence 111 134443 35558887432 357999998754433333221 111 24555578899998532 2
Q ss_pred CeEEEEECCCC
Q 010115 325 AETLIFDILKG 335 (518)
Q Consensus 325 ~~v~~yd~~~~ 335 (518)
..|.++|..++
T Consensus 309 ~~V~~~~~~~G 319 (386)
T 3v65_B 309 KSINSANKFTG 319 (386)
T ss_dssp TEEEEEETTTC
T ss_pred CeEEEEECCCC
Confidence 45888885443
No 277
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=58.20 E-value=1.2e+02 Score=28.32 Aligned_cols=197 Identities=12% Similarity=-0.018 Sum_probs=104.7
Q ss_pred eEEEEE--CCEEEEEcCcCCCCCCCcEEEEEcCC----CcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEc
Q 010115 92 HAAAVI--GNKMIVVGGESGNGLLDDVQVLNFDR----FSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVG 163 (518)
Q Consensus 92 ~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~----~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~G 163 (518)
++.+.. ++.||+.-.. ...++++++.. ..-..+... .. ..-.++++. ++.||+.-
T Consensus 33 ~g~~~d~~~~~ly~~D~~-----~~~I~~~~~~g~~~~~~~~~~~~~----------~~--~~p~glavd~~~~~ly~~d 95 (316)
T 1ijq_A 33 VALDTEVASNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTVISR----------DI--QAPDGLAVDWIHSNIYWTD 95 (316)
T ss_dssp EEEEEETTTTEEEEEETT-----TTEEEEEEC--------CEEEECS----------SC--SCCCEEEEETTTTEEEEEE
T ss_pred EEEEEEeCCCEEEEEECC-----CCcEEEEECCCCCCCcccEEEEeC----------CC--CCcCEEEEeecCCeEEEEE
Confidence 455554 5789987643 25688998876 222222110 00 112345543 78999974
Q ss_pred CcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeec
Q 010115 164 GKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHC 241 (518)
Q Consensus 164 G~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 241 (518)
.. ...++++|+....-+.+.. ..+..| ..+++. ++.||+..-.. ...++++++....-+.+..
T Consensus 96 ~~------~~~I~~~~~~g~~~~~~~~-~~~~~P---~~iavdp~~g~ly~~d~~~-----~~~I~~~~~dG~~~~~~~~ 160 (316)
T 1ijq_A 96 SV------LGTVSVADTKGVKRKTLFR-ENGSKP---RAIVVDPVHGFMYWTDWGT-----PAKIKKGGLNGVDIYSLVT 160 (316)
T ss_dssp TT------TTEEEEEETTSSSEEEEEE-CTTCCE---EEEEEETTTTEEEEEECSS-----SCEEEEEETTSCCEEEEEC
T ss_pred CC------CCEEEEEeCCCCceEEEEE-CCCCCc---ceEEeCCCCCEEEEEccCC-----CCeEEEEcCCCCCeEEEEE
Confidence 32 2368899988665444332 112222 344443 68999874211 2569999986554444321
Q ss_pred CCCCCCCCCCcEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCC
Q 010115 242 TGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSR 320 (518)
Q Consensus 242 ~g~~p~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 320 (518)
. .+.. -...++- .++.||+.-.. .+.|+++|++...-+.+.... .....-.++++.++.+|+.--..
T Consensus 161 ~-~~~~---P~gla~d~~~~~lY~~D~~-----~~~I~~~d~dg~~~~~~~~~~--~~~~~P~giav~~~~ly~~d~~~- 228 (316)
T 1ijq_A 161 E-NIQW---PNGITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILEDE--KRLAHPFSLAVFEDKVFWTDIIN- 228 (316)
T ss_dssp S-SCSC---EEEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEEECT--TTTSSEEEEEEETTEEEEEETTT-
T ss_pred C-CCCC---ceEEEEeccCCEEEEEECC-----CCeEEEEecCCCceEEEeecC--CccCCcEEEEEECCEEEEEECCC-
Confidence 1 1111 1234443 35558887532 357999999764434443221 11122245566788999976322
Q ss_pred CCCcCeEEEEECCCCc
Q 010115 321 KKRHAETLIFDILKGE 336 (518)
Q Consensus 321 ~~~~~~v~~yd~~~~~ 336 (518)
..|.++|+.+++
T Consensus 229 ----~~V~~~~~~~g~ 240 (316)
T 1ijq_A 229 ----EAIFSANRLTGS 240 (316)
T ss_dssp ----TEEEEEETTTCC
T ss_pred ----CeEEEEeCCCCc
Confidence 458888876543
No 278
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=56.88 E-value=1.4e+02 Score=28.74 Aligned_cols=118 Identities=14% Similarity=0.134 Sum_probs=59.1
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCC---CCcccCcEEEEEc
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDG---KRRKLNDLHMFDL 231 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~---~~~~~~~~~~yd~ 231 (518)
+..+|+.-+..... ...|.+||+.+.+-. .. +|.....+-+.. .+..+|+..-... .+...+.+.+||+
T Consensus 32 ~~~~yv~~~~~~~~--~~~v~v~D~~t~~~~--~~---i~~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 32 GRRSYINLPAHHSA--IIQQWVLDAGSGSIL--GH---VNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred CCEEEEeCCcccCC--ccEEEEEECCCCeEE--EE---ecCCCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 35677775411111 117899999987743 22 444333322222 3568888742211 1122466889999
Q ss_pred CCCcEE-EeecCCC-----CCCCCCCcEEEE-ECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEE
Q 010115 232 KSLTWL-PLHCTGT-----GPSPRSNHVAAL-YDDKNLLIFGGSSKSKTLNDLYSLDFETMIWT 288 (518)
Q Consensus 232 ~t~~W~-~~~~~g~-----~p~~r~~~~~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 288 (518)
.+.+-. .+...+. ...|+ ..++ -+++.||+..-. ..+.+.++| ++++-.
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~---~~~~spDG~~l~v~n~~----~~~~v~viD-~t~~~~ 160 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSW---MNANTPNNADLLFFQFA----AGPAVGLVV-QGGSSD 160 (373)
T ss_pred CCCcEEEEEECCCccccccCCCcc---ceEECCCCCEEEEEecC----CCCeEEEEE-CCCCEE
Confidence 875432 2221100 01121 2333 356667776321 135699999 877543
No 279
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=56.37 E-value=1.7e+02 Score=29.44 Aligned_cols=215 Identities=14% Similarity=0.046 Sum_probs=99.1
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCC----cEEEeeecCCC----CCCCcceEEEE-ECCEEEEEcccCCCCcccCcE
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETE----CWSVVEAKGDI----PVARSGHTVVR-ASSVLILFGGEDGKRRKLNDL 226 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~----~W~~~~~~~~~----p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~ 226 (518)
.+++|+-|..+ +.|+++|..++ +-.+.-...++ ...+ -|.+.. -++ |||----+..+..-+.+
T Consensus 95 r~~l~v~~l~s------~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~-Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 95 RRFLIVPGLRS------SRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSR-LHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp SCEEEEEBTTT------CCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEE-EEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred CCEEEEccCCC------CeEEEEECCCCCCCceeeeeechhhcccccCCCc-ccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 56777777654 46999999876 33222100001 1112 233333 345 77732222122345789
Q ss_pred EEEEcCCCcEEEeecCCCCCCCCCCcEEEEE-CCcEEEEEc----------CCCCC----CCCCcEEEEEcCCCeEEEee
Q 010115 227 HMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFG----------GSSKS----KTLNDLYSLDFETMIWTRIK 291 (518)
Q Consensus 227 ~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv~G----------G~~~~----~~~~~v~~yd~~~~~W~~v~ 291 (518)
.++|.++.+-...-..+..|... .+-.... +.+ +++.- |.... ...+.|..||..+.+-.+.-
T Consensus 167 ~vlD~~T~~v~~~~~~~~~~~~~-~Yd~~~~p~~~-~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI 244 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEIDRGDQYL-AYDFWWNLPNE-VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSL 244 (462)
T ss_dssp EEECTTTCCEEEECCSBCTTCCC-CCCEEEETTTT-EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEE
T ss_pred EEEECCCCeEEEEEccCCCCccc-cceEEECCCCC-EEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEE
Confidence 99999876643322111222211 1122222 344 34433 22222 34678999999876422221
Q ss_pred cCCCC-CCCCcceEEEEE---CCEEEEEcccCCCCCcCeEEEEECCCCceEEeecC--CCC-----CC-CC------CCC
Q 010115 292 IRGFH-PSPRAGCCGVLC---GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITS--PSS-----SV-TS------NKG 353 (518)
Q Consensus 292 ~~~~~-p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~--~~~-----~~-~~------r~~ 353 (518)
..+.. ..|| +-..++ +...||..-.+.....+.+++|..+.++|+..... +.. .+ .+ ...
T Consensus 245 ~vg~~g~~P~--~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~ 322 (462)
T 2ece_A 245 TLGEENRMAL--ELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPL 322 (462)
T ss_dssp ESCTTEEEEE--EEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCC
T ss_pred ecCCCCCccc--eeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCc
Confidence 12100 0111 111111 34567665422222335566555555778765431 110 00 00 122
Q ss_pred ceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcc
Q 010115 354 FTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIE 387 (518)
Q Consensus 354 ~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~ 387 (518)
.+.+.+. .+..+||+--- ..++|.+||+.
T Consensus 323 pa~I~lS-~DGrfLYVSnr----g~d~VavfdV~ 351 (462)
T 2ece_A 323 VTDIDIS-LDDKFLYLSLW----GIGEVRQYDIS 351 (462)
T ss_dssp CCCEEEC-TTSCEEEEEET----TTTEEEEEECS
T ss_pred eeEEEEC-CCCCEEEEEeC----CCCEEEEEEec
Confidence 3444444 34456775321 23589999986
No 280
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=55.96 E-value=2.2e+02 Score=30.70 Aligned_cols=246 Identities=15% Similarity=0.179 Sum_probs=116.8
Q ss_pred CCCCeEEeccCCCCCC-----CccceEEEEEC---CEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCC
Q 010115 72 NSENWMVLSIAGDKPI-----PRFNHAAAVIG---NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLK 143 (518)
Q Consensus 72 ~~~~W~~l~~~~~~p~-----~R~~~~~~~~~---~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~ 143 (518)
...+|+.+. ..+. .+.-+++++.. +.+|+..|.........+++=+=...+|+++...... + ..
T Consensus 45 gG~tW~~~~---~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~v~~S~DgG~TW~~~~~~~~~-~----~~ 116 (789)
T 1sqj_A 45 GTSKWIPLN---DFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAAFYVSEDRGQSFTIYESPFPM-G----AN 116 (789)
T ss_dssp TTTEEEESC---TTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCEEEEESSTTSEEEEEECSSCC-C----TT
T ss_pred CCCCeeECc---cCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccEEEEECCCCCcceeccCCccc-C----cc
Confidence 567899985 2221 12334444442 4688876643211113344333334699998641100 0 00
Q ss_pred CCCc-cceEEEEE---CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE----CCEEEEEcc
Q 010115 144 IPAC-RGHSLISW---GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA----SSVLILFGG 215 (518)
Q Consensus 144 ~~~r-~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~----~~~iyv~GG 215 (518)
.+.+ ..+.+++. .+.+|+ |... ..+|+=+-.-.+|+.+.....+...-.+...+.+ .+.||+...
T Consensus 117 ~~~~~~~~~iav~p~~~~~v~~-g~~~------~gl~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~ 189 (789)
T 1sqj_A 117 DMGRNNGERLAVNPFNSNEVWM-GTRT------EGIWKSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASAT 189 (789)
T ss_dssp STTTTSCCCEEEETTEEEEEEE-ECSS------SCEEEESSTTSSCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEEES
T ss_pred CCCccceeEEEEcCCCCCEEEE-Eecc------CCEEEECCCCcccCCCccCccccCCCCCeEEEEECCCCCCEEEEEEc
Confidence 1222 22345554 345666 3321 2366654455789988641111111122223332 246777543
Q ss_pred cCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCC----------------CCcEEEEEC-CcEEEEEcCCCC---CCCCC
Q 010115 216 EDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPR----------------SNHVAALYD-DKNLLIFGGSSK---SKTLN 275 (518)
Q Consensus 216 ~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r----------------~~~~~~~~~-~~~lyv~GG~~~---~~~~~ 275 (518)
.. ..+++=.-.-.+|+.+. ..|... ..|.+++.. ...||+..+... .....
T Consensus 190 ~~------~~v~~S~DgG~TW~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~p~~g~~g 260 (789)
T 1sqj_A 190 AP------QGMYVTHDGGVSWEPVA---GQPSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVTYADYPGPWGVTFG 260 (789)
T ss_dssp ST------TCEEEESSTTSSCEECT---TCCCSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEEEESSCSSSCCCCC
T ss_pred CC------CeEEEEcCCCcCcccCC---CCcCccccccccccCcccccccccceeEEcCCCCeEEEEEecCCCCCCCCCc
Confidence 21 22333222345899986 222211 114444432 444777632110 01235
Q ss_pred cEEEEEcCCCeEEEeecCCCC--CCC----Cc---ceEEEEE----CCEEEEEcccCCC-CCcCeEEEEECCCCceEEee
Q 010115 276 DLYSLDFETMIWTRIKIRGFH--PSP----RA---GCCGVLC----GTKWYIAGGGSRK-KRHAETLIFDILKGEWSVAI 341 (518)
Q Consensus 276 ~v~~yd~~~~~W~~v~~~~~~--p~~----r~---~~~~~~~----~~~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~ 341 (518)
.|++.+-...+|+++...+.. |.+ .+ +...+.+ .+.||+.+..... .....+++-+-...+|+.+.
T Consensus 261 ~l~~S~DgG~tW~~~~~~~~~~~p~~~~~~~~~~~g~~~lav~p~~~~~v~~~~~~~~~~~~~~~l~~S~DgG~tW~~~~ 340 (789)
T 1sqj_A 261 EVWRQNRTSGAWDDITPRVGNSSPAPYNNQTFPAGGFCGLSVDATNPNRLVVITLDRDPGPALDSIYLSTDAGATWKDVT 340 (789)
T ss_dssp CEEEEETTTCCEEECCCCTTTEESCCCSSCCSCCCEEEEEEEETTEEEEEEEEEECCCSCSSCCCEEEESSTTSSEEEHH
T ss_pred eEEEEeCCCCceEECcCCCCccccccccccccccCceEEEEECCCCCCEEEEEEeccCCCcccccEEEecCCCCCceeCc
Confidence 699999899999998753110 101 12 3233333 2467877653221 01134666666678999886
No 281
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=55.06 E-value=2.7e+02 Score=31.44 Aligned_cols=189 Identities=10% Similarity=0.065 Sum_probs=101.7
Q ss_pred CCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcE-EEeec-CCCCCCCCCCcEEEEE--CCcEEEEEcCCCCCC
Q 010115 197 ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTW-LPLHC-TGTGPSPRSNHVAALY--DDKNLLIFGGSSKSK 272 (518)
Q Consensus 197 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W-~~~~~-~g~~p~~r~~~~~~~~--~~~~lyv~GG~~~~~ 272 (518)
.-.++++...++.+ ++|.-... .....++.|+.....| ..... .+.......++++++. ++...+|+|-- ...
T Consensus 333 ~q~GfSa~~t~d~~-~~GapG~~-~w~G~v~~~~~~~~~~~~~~~~~~~~~~~sylGySVa~~~~~g~~~~v~GAP-~~~ 409 (1095)
T 3k6s_A 333 AQEGFSAVFTPDGP-VLGAVGSF-TWSGGAFLYPPNMSPTFINMSQENVDMRDSYLGYSTELALWKGVQSLVLGAP-RYQ 409 (1095)
T ss_dssp CCTTSSEECCTTCC-EEEESCST-TTTBEEEECCSSSCCEEECCCSSCCCCCSCCBTSSEECCCCSSSCEEEEEET-TGG
T ss_pred ccccccceecCCcc-eEcccccC-CccceeEEecCCCcceeeccccccccccccccceeeEEeccCCceEEEEEcc-ccc
Confidence 34556666655555 77765443 2445677887655443 32221 1122333345555442 23335666622 112
Q ss_pred CCCcEEEEEcCCCeEEEeec-CCCCCCCCcceEEEEEC------CEEEEEcccCC--CCCcCeEEEEECCC--CceEEee
Q 010115 273 TLNDLYSLDFETMIWTRIKI-RGFHPSPRAGCCGVLCG------TKWYIAGGGSR--KKRHAETLIFDILK--GEWSVAI 341 (518)
Q Consensus 273 ~~~~v~~yd~~~~~W~~v~~-~~~~p~~r~~~~~~~~~------~~iyv~GG~~~--~~~~~~v~~yd~~~--~~W~~~~ 341 (518)
....++.|......|..... .|......++++.++.+ ..++++|.-.. ......+++|.... ..|....
T Consensus 410 ~~G~V~i~~~~~~~~~~~~~~~g~~~gs~fG~sva~~DvngDG~~DllvvGAP~~~~~~~~G~Vyvy~~~~~~~~~~~~~ 489 (1095)
T 3k6s_A 410 HTGKAVIFTQVSRQWRMKAEVTGTQIGSYFGASLCSVDVDSDGSTDLVLIGAPHYYEQTRGGQVSVCPLPRGWRRWWCDA 489 (1095)
T ss_dssp GTCEEEEEECCTTTCCEEEEECCSSTTSCTTSCEEEECSSSSSSCCEEEEECSSCCSSCCCBCEEEEECCSSTTCCCSCS
T ss_pred ccceEEEEEecCCcceEEeecccCcccCcCCceEEEEEeCCCCCccEEEECCccccCcCCCCEEEEEEeCCCCcceeeeE
Confidence 34579999988778887654 33334456677776642 25777774321 23346788886543 4586433
Q ss_pred cCCCCC--CCCCCCceEEEEeeC-C--ccEEEEEcC-CCCCCCCcEEEEEcccC
Q 010115 342 TSPSSS--VTSNKGFTLVLVQHK-E--KDFLVAFGG-IKKEPSNQVEVLSIEKN 389 (518)
Q Consensus 342 ~~~~~~--~~~r~~~s~~~~~~~-~--~~~l~v~GG-~~~~~~~~v~~yd~~~~ 389 (518)
...... +..++|.+++.+++- + ..-| ++|. ..+.....+++|.-..+
T Consensus 490 ~l~g~~~~~~~~FG~sva~~gD~NgDG~~Dl-~VGAP~~~~~~G~vyi~~g~~~ 542 (1095)
T 3k6s_A 490 VLYGEQGHPWGRFGAALTVLGDVNGDKLTDV-VIGAPGEEENRGAVYLFHGVLG 542 (1095)
T ss_dssp SCCCCCSCSSCCBTSCEEEEECSSSSSCCEE-EEECTTTTTSCCBEEEEEBCSS
T ss_pred EeecccCCccccCccceEeecccCCCCCcCE-EEeCCcCCCCCCEEEEecCCCC
Confidence 222221 357889999887552 2 2234 3443 22234668899887665
No 282
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=52.41 E-value=1.8e+02 Score=28.44 Aligned_cols=19 Identities=21% Similarity=0.392 Sum_probs=13.4
Q ss_pred CCCcEEEEECCcEEEEEcC
Q 010115 249 RSNHVAALYDDKNLLIFGG 267 (518)
Q Consensus 249 r~~~~~~~~~~~~lyv~GG 267 (518)
-..|++++..+..+|.+|-
T Consensus 337 G~~hs~alt~~G~v~~wG~ 355 (406)
T 4d9s_A 337 GWRHTLAVTERNNVFAWGR 355 (406)
T ss_dssp CSSEEEEEETTSCEEEEEC
T ss_pred CCCeEEEEeCCCCEEEecC
Confidence 3467777776655999984
No 283
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=51.95 E-value=1.7e+02 Score=28.07 Aligned_cols=164 Identities=13% Similarity=0.112 Sum_probs=82.0
Q ss_pred CCEEEEEcccCCCCcccCcEEEEEcCCCc---EEEeecCCCCCCCCCCc-EEEEE-CCcEEEEEcCCCCCCCCCcEEEEE
Q 010115 207 SSVLILFGGEDGKRRKLNDLHMFDLKSLT---WLPLHCTGTGPSPRSNH-VAALY-DDKNLLIFGGSSKSKTLNDLYSLD 281 (518)
Q Consensus 207 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~---W~~~~~~g~~p~~r~~~-~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd 281 (518)
++.+||.+-... ..|+++++.... |-.-. +....+.+. .++.. ++..|++..+ . ..+++||
T Consensus 147 ~GnaYVt~s~~~-----~~I~rV~pdG~~~~~~~~~~---~~~~~~~G~nGIv~~pdg~~Liv~~~-~-----g~L~~fD 212 (334)
T 2p9w_A 147 DGNSYVAFALGM-----PAIARVSADGKTVSTFAWES---GNGGQRPGYSGITFDPHSNKLIAFGG-P-----RALTAFD 212 (334)
T ss_dssp TSCEEEEEEESS-----CEEEEECTTSCCEEEEEECC---CCSSSCCSCSEEEEETTTTEEEEESS-S-----SSEEEEE
T ss_pred CCCEEEeCCCCC-----CeEEEEeCCCCEEeeeeecC---CCcccccCcceEEEeCCCCEEEEEcC-C-----CeEEEEc
Confidence 479999755431 459999987543 43221 222334444 34445 3555677654 3 4699999
Q ss_pred cCCCeEEEeecC--CCCCCCCcceE--EEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCC-CCCCceE
Q 010115 282 FETMIWTRIKIR--GFHPSPRAGCC--GVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVT-SNKGFTL 356 (518)
Q Consensus 282 ~~~~~W~~v~~~--~~~p~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~-~r~~~s~ 356 (518)
+.+.....++.. |........-. ....+++++++.-.. +.++.+--..+ |+........... ...+++.
T Consensus 213 ~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~-----~~~~~l~S~Dg-W~sa~~~g~~~~~~~~~g~tt 286 (334)
T 2p9w_A 213 VSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARA-----PYAISFRSWDN-WKSANIKKTKRSELQNSGFTA 286 (334)
T ss_dssp CSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEET-----TEEEEEECSST-TSEEEEEEEECGGGGSSCEEE
T ss_pred CCCCcceeecccccCCcccccCcccccccccCCEEEEEEcCC-----CCEEEEECCCC-cceeEEeeeecCccccCceeE
Confidence 875432122211 21101111112 223588885554322 22444444444 8776432211111 1356666
Q ss_pred EEEe-eCCccEEEEEcCCCCCC----CCcEEEEEcccCC
Q 010115 357 VLVQ-HKEKDFLVAFGGIKKEP----SNQVEVLSIEKNE 390 (518)
Q Consensus 357 ~~~~-~~~~~~l~v~GG~~~~~----~~~v~~yd~~~~~ 390 (518)
+++. ....+.||++.+.-.+. ....-++|+....
T Consensus 287 ~t~~~~~~~~~iYvv~~~f~~~~~g~r~~f~~~di~~~~ 325 (334)
T 2p9w_A 287 VADYYQGSEQGLYAVSAFFDNGAHGGRSDYPLYKLDNSI 325 (334)
T ss_dssp EEEEEETTEEEEEEEECCGGGTTTSCCCCEEEEECCGGG
T ss_pred EEEeccccCCeEEEEeeecCCcccCCcceeechhhhhhh
Confidence 6551 12347899987664322 4566666665543
No 284
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=51.90 E-value=70 Score=33.74 Aligned_cols=158 Identities=13% Similarity=0.103 Sum_probs=72.9
Q ss_pred EEEEECCEEEEEcccCCCCcccCcEEEEEcCCC-cEEEeecC---CCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcE
Q 010115 202 TVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL-TWLPLHCT---GTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDL 277 (518)
Q Consensus 202 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~~~---g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v 277 (518)
+++..++++|+|=| +.+|+++.... ........ ..+|. ....+.....++.+|+|=| +..
T Consensus 448 Ait~~rg~~yfFKg--------~~yWr~~~~~~~~~~P~~Is~~wp~LP~-~IDAA~~~~~~~k~yFFkG-------~~y 511 (631)
T 1ck7_A 448 GIAQIRGEIFFFKD--------RFIWRTVTPRDKPMGPLLVATFWPELPE-KIDAVYEAPQEEKAVFFAG-------NEY 511 (631)
T ss_dssp EEEECSSSEEEECS--------SEEEEESCTTSCCEEEEEGGGTCTTSCS-SCSBCCEETTTTEEEEEET-------TEE
T ss_pred eeEecCCcEEEEcC--------CEEEEEcCCCCCCCCceeccccCCCCCc-cceEEEEECCCCEEEEEec-------CEE
Confidence 44557889999955 23666655431 22211111 12332 2333222223344888865 368
Q ss_pred EEEEcCCC--eE-EEeecCCCCCCCCcceEEEE--ECCEEEEEcccCCCCCcCeEEEEECCCCceEEe-ec-CCCCCCCC
Q 010115 278 YSLDFETM--IW-TRIKIRGFHPSPRAGCCGVL--CGTKWYIAGGGSRKKRHAETLIFDILKGEWSVA-IT-SPSSSVTS 350 (518)
Q Consensus 278 ~~yd~~~~--~W-~~v~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~~-~~~~~~~~ 350 (518)
|+|+-.+. .+ +.+...+.+..+..--+|.. .++++|+|-| +..|+||..+.+-..- +. .....+..
T Consensus 512 Wry~~~~l~~GYPk~Is~~G~P~~~~~IDAAf~~~~~gktYFFkG-------~~ywryd~~~~~vd~gYPk~i~~~w~G~ 584 (631)
T 1ck7_A 512 WIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG-------DKFWRYNEVKKKMDPGFPKLIADAWNAI 584 (631)
T ss_dssp EEEETTEECTTCCEEGGGGTCCTTCCCCCBCCCCTTTCEEEEEET-------TEEEEEETTTTEECTTCCEETTTSCSSC
T ss_pred EEECCCccccCCCccchhcCCCCCCCcceeEEEecCCCeEEEEEC-------CEEEEEcCCcccccCCCCcchHhhcCCC
Confidence 99985210 00 11222121111111223333 2689999977 4689999776532110 00 00000000
Q ss_pred CCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccC
Q 010115 351 NKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (518)
Q Consensus 351 r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~ 389 (518)
... .-+++...+.+.+|+|-|. ..|.||..+.
T Consensus 585 p~~-iDAAf~~~~~g~~YFFkG~------~Ywr~d~~~~ 616 (631)
T 1ck7_A 585 PDN-LDAVVDLQGGGHSYFFKGA------YYLKLENQSL 616 (631)
T ss_dssp CTT-CCEEECCTTSCBCEEEETT------EEECCBTTBT
T ss_pred CCC-CcEeEEEcCCCeEEEEECC------EEEEEeCccc
Confidence 111 1222333334567888775 5677776554
No 285
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=50.89 E-value=59 Score=34.41 Aligned_cols=241 Identities=6% Similarity=-0.003 Sum_probs=0.0
Q ss_pred CcEEEEEcCCCcEEEcccccccCCCCCCCCCCCc----cceEEEEECCEEEEEcCc---------CCCCCCceeEEEEEC
Q 010115 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPAC----RGHSLISWGKKVLLVGGK---------TDSGSDRVSVWTFDT 180 (518)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r----~~~~~~~~~~~iyv~GG~---------~~~~~~~~~v~~yd~ 180 (518)
..++++|..+.+-..+.. .... .......-+++.++++.. .. .++.+|.
T Consensus 36 ~~i~~~~~~~g~~~~~~~------------~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~------~i~~~d~ 97 (719)
T 1z68_A 36 NNIVLYNIETGQSYTILS------------NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTA------TYYIYDL 97 (719)
T ss_dssp SCEEEEESSSCCEEEEEC------------HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEE------EEEEEET
T ss_pred CCEEEEEcCCCcEEEEEc------------cccccccceeeEEECCCCCeEEEEecCceeEEeecce------EEEEEEC
Q ss_pred CCCcE---EEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCC-----------
Q 010115 181 ETECW---SVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGP----------- 246 (518)
Q Consensus 181 ~t~~W---~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p----------- 246 (518)
.+++. ..+. .........-+++.++++... +++++|..+.+-..+...+...
T Consensus 98 ~~g~~~~~~~l~-------~~~~~~~~SPDG~~la~~~~~-------~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~ 163 (719)
T 1z68_A 98 SNGEFVRGNELP-------RPIQYLCWSPVGSKLAYVYQN-------NIYLKQRPGDPPFQITFNGRENKIFNGIPDWVY 163 (719)
T ss_dssp TTTEECCSSCCC-------SSBCCEEECSSTTCEEEEETT-------EEEEESSTTSCCEECCCCCBTTTEEESSCCHHH
T ss_pred CCCccccceecC-------cccccceECCCCCEEEEEECC-------eEEEEeCCCCCcEEEecCCCcCCeEccccccee
Q ss_pred ----CCCCCcEEEEECCcEEEEEcCCCCCC-----------------------------CCCcEEEEEcCCCe---EEEe
Q 010115 247 ----SPRSNHVAALYDDKNLLIFGGSSKSK-----------------------------TLNDLYSLDFETMI---WTRI 290 (518)
Q Consensus 247 ----~~r~~~~~~~~~~~~lyv~GG~~~~~-----------------------------~~~~v~~yd~~~~~---W~~v 290 (518)
..+....+..-+++ .++++..+... ...+++.+|+++.+ |.++
T Consensus 164 ~ee~~~~~~~~~wSPDG~-~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~ 242 (719)
T 1z68_A 164 EEEMLATKYALWWSPNGK-FLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEV 242 (719)
T ss_dssp HHHTTCSSCCEEECTTSS-EEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEEC
T ss_pred eeecccCcccEEECCCCC-EEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEc
Q ss_pred ecCCCCCCCCcceEEEEE--CCEEEEEcccCCCCCcCeEEEEE----CCCCceEEeec---CCCCCCCCCCCceEEEEee
Q 010115 291 KIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFD----ILKGEWSVAIT---SPSSSVTSNKGFTLVLVQH 361 (518)
Q Consensus 291 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd----~~~~~W~~~~~---~~~~~~~~r~~~s~~~~~~ 361 (518)
...............+.+ ++++++. .........+++.+| +.++++..+.. ...........+....+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~SpD~~~~~~-~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 321 (719)
T 1z68_A 243 PVPAMIASSDYYFSWLTWVTDERVCLQ-WLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSY 321 (719)
T ss_dssp CCCHHHHTSCEEEEEEEESSSSEEEEE-EEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECT
T ss_pred cCCccCCCCcceEEEeEEeCCCeEEEE-EeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECC
Q ss_pred CCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 362 KEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 362 ~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
+++..+++....++.. .++.+|+.+.+
T Consensus 322 dg~~l~~~~~~~~g~~--~l~~~~~~~~~ 348 (719)
T 1z68_A 322 DAISYYKIFSDKDGYK--HIHYIKDTVEN 348 (719)
T ss_dssp TSSCEEEEEECTTSCE--EEEEESSCSTT
T ss_pred CCCeEEEEEEccCCce--EEEEEECCCCc
No 286
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=50.31 E-value=2.8e+02 Score=30.08 Aligned_cols=218 Identities=12% Similarity=0.081 Sum_probs=114.1
Q ss_pred cEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCceeEEEEECCCC----cEEEe
Q 010115 115 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETE----CWSVV 188 (518)
Q Consensus 115 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~----~W~~~ 188 (518)
.+..+++....+..+... ...-.+++.. +++||+.-... ..|+++++... ....+
T Consensus 405 ~Ir~i~l~~~~~~~l~~~-------------~~~~~gl~~d~~~~~lY~sD~~~------~~I~~~~l~g~~~~~~~~~v 465 (791)
T 3m0c_C 405 EVRKMTLDRSEYTSLIPN-------------LRNVVALDTEVASNRIYWSDLSQ------RMICSTQLDRAHGVSSYDTV 465 (791)
T ss_dssp SEEEECTTSCCCEEEECS-------------CSSEEEEEEETTTTEEEEEETTT------TEEEEEEC--------CEEE
T ss_pred ceeEeeccCCcceeeecC-------------CCceEEEeecccCCeeEEeeccc------eeEEEEeccCCCCCcceeEE
Confidence 456666666666555431 1122344443 58899885432 35888887752 23333
Q ss_pred eecCCCCCCCcceEEEE--ECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEE-CCcEEEEE
Q 010115 189 EAKGDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIF 265 (518)
Q Consensus 189 ~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv~ 265 (518)
... .+.. -.++++ .+++||+.-. ..+.|+++++....-+.+.. ..+..|+ ++++. .++.||+.
T Consensus 466 i~~-~l~~---P~GLAvD~~~~~LY~tD~------~~~~I~v~~ldG~~~~~l~~-~~l~~P~---gIaVDp~~g~LYwt 531 (791)
T 3m0c_C 466 ISR-DIQA---PDGLAVDWIHSNIYWTDS------VLGTVSVADTKGVKRKTLFR-ENGSKPR---AIVVDPVHGFMYWT 531 (791)
T ss_dssp ECS-SCSC---CCEEEEETTTTEEEEEET------TTTEEEEEETTSSSEEEEEE-CTTCCEE---EEEEETTTTEEEEE
T ss_pred Eec-CCCC---cceeeeeecCCcEEEEec------CCCeEEEEeCCCCeEEEEEe-CCCCCcc---eEEEecCCCCEEEe
Confidence 221 1111 123444 3679999732 24579999998766555532 1233332 34443 23458876
Q ss_pred cCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCCCceEEeecC
Q 010115 266 GGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITS 343 (518)
Q Consensus 266 GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 343 (518)
--. ....|++++++...-+.+...+ ...| .+.++. +++||+.-.. ...|+++|++...-+.+...
T Consensus 532 D~g----~~~~I~~~~~dG~~~~~lv~~~-l~~P---~GLavD~~~~~LYwaD~~-----~~~I~~~d~dG~~~~~v~~~ 598 (791)
T 3m0c_C 532 DWG----TPAKIKKGGLNGVDIYSLVTEN-IQWP---NGITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILED 598 (791)
T ss_dssp ECS----SSCEEEEEETTSCCEEEEECSS-CSCE---EEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEEEC
T ss_pred cCC----CCCeEEEEecCCCceEEEEeCC-CCCc---eEEEEecCCCeEEEEeCC-----CCcEEEEecCCCceEEEecC
Confidence 411 1246999999766554443321 1111 233433 6899998532 35699999987655554422
Q ss_pred CCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccC
Q 010115 344 PSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (518)
Q Consensus 344 ~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~ 389 (518)
... ....+++++.. ++||+.--. .+.|+++|..+.
T Consensus 599 ~~~---l~~P~glav~~----~~lYwtD~~----~~~I~~~dk~tG 633 (791)
T 3m0c_C 599 EKR---LAHPFSLAVFE----DKVFWTDII----NEAIFSANRLTG 633 (791)
T ss_dssp TTT---TSSEEEEEEET----TEEEEEETT----TTEEEEEETTTC
T ss_pred CCc---cCCCCEEEEeC----CEEEEEECC----CCEEEEEeCCCC
Confidence 111 22334555533 578876533 246677765443
No 287
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=49.49 E-value=1.4e+02 Score=26.62 Aligned_cols=149 Identities=12% Similarity=0.057 Sum_probs=76.7
Q ss_pred ECCEEEEEcCcCCCCCCceeEEEEEC------CCCcEEEeeec---CCCCC-----CCcceEEEEECCEEEEEcccCCCC
Q 010115 155 WGKKVLLVGGKTDSGSDRVSVWTFDT------ETECWSVVEAK---GDIPV-----ARSGHTVVRASSVLILFGGEDGKR 220 (518)
Q Consensus 155 ~~~~iyv~GG~~~~~~~~~~v~~yd~------~t~~W~~~~~~---~~~p~-----~r~~~~~~~~~~~iyv~GG~~~~~ 220 (518)
.++++|+|-|. .+|+++. ........... ..+|. .....+....++++|+|=|
T Consensus 12 ~~ge~~fFk~~--------~~wr~~~~~~~~~~~~~~~p~~I~~~Wp~LP~~~f~~~~iDAa~~~~~g~~~fFkg----- 78 (225)
T 3oyo_A 12 SEYEVYFFAKN--------KYVRLHYTPGASSDTILTNLRLISSGFPSLAGTPFAEPGIDCSFHTEASEAYVFSG----- 78 (225)
T ss_dssp STTEEEEEETT--------EEEEEECCTTCSCCEEEEEEEEHHHHCGGGTTSTTTTTCCSEEEECSTTEEEEEET-----
T ss_pred CCCEEEEEECC--------EEEEEecccccccCcccCCceehhhhcccCCCccCCCCCEeEEEEcCCCeEEEEcC-----
Confidence 37899999764 4888882 11112111100 12442 2333222225799999965
Q ss_pred cccCcEEEEEcCC----CcEEE----eec-CCCCCCC----CCCcEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCe
Q 010115 221 RKLNDLHMFDLKS----LTWLP----LHC-TGTGPSP----RSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMI 286 (518)
Q Consensus 221 ~~~~~~~~yd~~t----~~W~~----~~~-~g~~p~~----r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 286 (518)
+.+|+||..+ ..... +.. -..+|.. ... ++... .++.+|+|-| +..|+||..+.+
T Consensus 79 ---~~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~ID-AA~~~~~~gk~yfFkG-------~~yw~~d~~~~~ 147 (225)
T 3oyo_A 79 ---NHSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSID-SAFRSTKGKEVYLFKG-------NKYVRIAYDSKQ 147 (225)
T ss_dssp ---TEEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCC-EEEECSSTTEEEEEET-------TEEEEEETTTTE
T ss_pred ---CEEEEEecccccCCCceecCchhhhhcCCCCCCcccccccc-eEEEECCCCcEEEEeC-------CeEEEEECCCCe
Confidence 3588887632 22211 110 0123321 222 22222 2345899977 469999977665
Q ss_pred EEEeec-CC-CCCC------CCcceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCC
Q 010115 287 WTRIKI-RG-FHPS------PRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILK 334 (518)
Q Consensus 287 W~~v~~-~~-~~p~------~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~ 334 (518)
...-+. .. ..|. +..-.+|... ++++|++-| +..|+||..+
T Consensus 148 ~~~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG-------~~ywr~d~~~ 198 (225)
T 3oyo_A 148 LVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKG-------QNYVRIDFTP 198 (225)
T ss_dssp EEEEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEET-------TEEEEEECCT
T ss_pred ecCCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEEC-------CEEEEEeCCc
Confidence 443100 00 0111 2333455553 789999987 4589999873
No 288
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=48.69 E-value=1.9e+02 Score=27.86 Aligned_cols=218 Identities=10% Similarity=-0.017 Sum_probs=117.7
Q ss_pred CcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeec
Q 010115 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 191 (518)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 191 (518)
+.+.++++.......+... ...-.+++.. ++.||+.--. ...|+++++.....+.+...
T Consensus 96 ~~I~~i~~~~~~~~~~~~~-------------~~~~~gl~~d~~~~~ly~~D~~------~~~I~r~~~~g~~~~~~~~~ 156 (386)
T 3v65_B 96 IDIRQVLPHRSEYTLLLNN-------------LENAIALDFHHRRELVFWSDVT------LDRILRANLNGSNVEEVVST 156 (386)
T ss_dssp SCEEEECTTSCCCEEEECS-------------CSCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCCEEEEECS
T ss_pred ccceeeccCCCcEEEEecC-------------CCccEEEEEecCCCeEEEEeCC------CCcEEEEecCCCCcEEEEeC
Confidence 4678888877666554431 1122344443 5889987432 23699999998876665431
Q ss_pred CCCCCCCcceEEEE--ECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEE-CCcEEEEEcCC
Q 010115 192 GDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGS 268 (518)
Q Consensus 192 ~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~ 268 (518)
+ +..+ ..+++ .++.||+.-.. .+.++++++....-+.+.. ..+..|+ ..++. .++.||+.--.
T Consensus 157 ~-~~~p---~glavd~~~g~lY~~d~~------~~~I~~~~~dg~~~~~l~~-~~l~~P~---giavdp~~g~ly~td~~ 222 (386)
T 3v65_B 157 G-LESP---GGLAVDWVHDKLYWTDSG------TSRIEVANLDGAHRKVLLW-QSLEKPR---AIALHPMEGTIYWTDWG 222 (386)
T ss_dssp S-CSCC---CCEEEETTTTEEEEEETT------TTEEEECBTTSCSCEEEEC-SSCSCEE---EEEEETTTTEEEEEECS
T ss_pred C-CCCc---cEEEEEeCCCeEEEEcCC------CCeEEEEeCCCCceEEeec-CCCCCCc---EEEEEcCCCeEEEeccC
Confidence 1 2222 23444 36899987432 3468888886554333321 1222222 33444 24557776421
Q ss_pred CCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCC
Q 010115 269 SKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSS 346 (518)
Q Consensus 269 ~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~ 346 (518)
. ...|++++++...-+.+...+ ...-.+.++. +++||+.-.. ...|+++|++...-..+....
T Consensus 223 ~----~~~I~r~~~dG~~~~~~~~~~----~~~PnGlavd~~~~~lY~aD~~-----~~~I~~~d~dG~~~~~~~~~~-- 287 (386)
T 3v65_B 223 N----TPRIEASSMDGSGRRIIADTH----LFWPNGLTIDYAGRRMYWVDAK-----HHVIERANLDGSHRKAVISQG-- 287 (386)
T ss_dssp S----SCEEEEEETTSCSCEEEECSS----CSCEEEEEEEGGGTEEEEEETT-----TTEEEEECTTSCSCEEEECSS--
T ss_pred C----CCEEEEEeCCCCCcEEEEECC----CCCeeeEEEeCCCCEEEEEECC-----CCEEEEEeCCCCeeEEEEECC--
Confidence 1 357999998765444443221 1111234443 7899998543 256999998765444433211
Q ss_pred CCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 347 SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 347 ~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
...-+++++. .+.||+.--. .+.|.++|..+.+
T Consensus 288 ---~~~P~giav~----~~~ly~td~~----~~~V~~~~~~~G~ 320 (386)
T 3v65_B 288 ---LPHPFAITVF----EDSLYWTDWH----TKSINSANKFTGK 320 (386)
T ss_dssp ---CSSEEEEEEE----TTEEEEEETT----TTEEEEEETTTCC
T ss_pred ---CCCceEEEEE----CCEEEEeeCC----CCeEEEEECCCCc
Confidence 1122455542 2568776432 3478888854443
No 289
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=48.13 E-value=2e+02 Score=30.52 Aligned_cols=107 Identities=15% Similarity=0.104 Sum_probs=51.5
Q ss_pred eEEEEECCCCcEEEeeecCCCCCCCcce--EEEEECCEEEEEcccCCC---CcccCcEEEEEcCCCcEEEeecCCCCCCC
Q 010115 174 SVWTFDTETECWSVVEAKGDIPVARSGH--TVVRASSVLILFGGEDGK---RRKLNDLHMFDLKSLTWLPLHCTGTGPSP 248 (518)
Q Consensus 174 ~v~~yd~~t~~W~~~~~~~~~p~~r~~~--~~~~~~~~iyv~GG~~~~---~~~~~~~~~yd~~t~~W~~~~~~g~~p~~ 248 (518)
.++.||+.+++=..+-.......-.... -...-+++.++++..+.. .....++++||+.+.+...+. ..+.
T Consensus 37 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~---~~~~- 112 (740)
T 4a5s_A 37 NILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEE---RIPN- 112 (740)
T ss_dssp EEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS---CCCT-
T ss_pred cEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcc---cCCC-
Confidence 6899999988754443211111100001 111224444444443211 122367899999998866553 2121
Q ss_pred CCCcEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeec
Q 010115 249 RSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKI 292 (518)
Q Consensus 249 r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~ 292 (518)
. ....+.. +++ .++++- + ++|+..|..+..-.++..
T Consensus 113 ~-~~~~~~SPdG~-~la~~~-~-----~~i~~~~~~~~~~~~lt~ 149 (740)
T 4a5s_A 113 N-TQWVTWSPVGH-KLAYVW-N-----NDIYVKIEPNLPSYRITW 149 (740)
T ss_dssp T-EEEEEECSSTT-CEEEEE-T-----TEEEEESSTTSCCEECCS
T ss_pred c-ceeeEECCCCC-EEEEEE-C-----CeEEEEECCCCceEEEcC
Confidence 1 1222222 334 233331 1 367888777666555543
No 290
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=47.39 E-value=1.9e+02 Score=27.42 Aligned_cols=194 Identities=8% Similarity=-0.021 Sum_probs=105.9
Q ss_pred eEEEEE--CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCC
Q 010115 92 HAAAVI--GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTD 167 (518)
Q Consensus 92 ~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~ 167 (518)
.+++.. ++.||+.--. ...++++++....-+.+.... +. .-.++++. ++.||+.-..
T Consensus 76 ~~l~~d~~~~~ly~~D~~-----~~~I~r~~~~g~~~~~~~~~~--------~~----~p~glavd~~~g~ly~~d~~-- 136 (349)
T 3v64_C 76 IALDFHHRRELVFWSDVT-----LDRILRANLNGSNVEEVVSTG--------LE----SPGGLAVDWVHDKLYWTDSG-- 136 (349)
T ss_dssp EEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEECSS--------CS----CCCEEEEETTTTEEEEEETT--
T ss_pred EEEEEeccccEEEEEecc-----CCceEEEecCCCCceEEEeCC--------CC----CccEEEEecCCCeEEEEcCC--
Confidence 344443 5788887432 246889998876654443210 11 11344443 7899987443
Q ss_pred CCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCC
Q 010115 168 SGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTG 245 (518)
Q Consensus 168 ~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~ 245 (518)
...++++++....-+.+.. ..+..| ..+++. ++.||+.--.. ...++++++....-+.+... .+
T Consensus 137 ----~~~I~~~~~dG~~~~~l~~-~~l~~P---~~iavdp~~g~ly~td~~~-----~~~I~r~~~dG~~~~~~~~~-~~ 202 (349)
T 3v64_C 137 ----TSRIEVANLDGAHRKVLLW-QSLEKP---RAIALHPMEGTIYWTDWGN-----TPRIEASSMDGSGRRIIADT-HL 202 (349)
T ss_dssp ----TTEEEEEETTSCSCEEEEC-TTCSCE---EEEEEETTTTEEEEEECSS-----SCEEEEEETTSCSCEESCCS-SC
T ss_pred ----CCeEEEEcCCCCceEEEEe-CCCCCc---ceEEEecCcCeEEEeccCC-----CCEEEEEeCCCCCcEEEEEC-CC
Confidence 2368899988665444332 122222 334444 67899874221 25699999876544443211 11
Q ss_pred CCCCCCcEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCCCc
Q 010115 246 PSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRH 324 (518)
Q Consensus 246 p~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 324 (518)
..| .+.++- .++.||+.-.. .+.|+++|++...-+.+...+ .. .-.++++.++.||+..-..
T Consensus 203 ~~P---nGla~d~~~~~lY~aD~~-----~~~I~~~~~dG~~~~~~~~~~-~~---~P~giav~~~~ly~td~~~----- 265 (349)
T 3v64_C 203 FWP---NGLTIDYAGRRMYWVDAK-----HHVIERANLDGSHRKAVISQG-LP---HPFAITVFEDSLYWTDWHT----- 265 (349)
T ss_dssp SCE---EEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEECSS-CS---SEEEEEEETTEEEEEETTT-----
T ss_pred CCc---ceEEEeCCCCEEEEEECC-----CCEEEEEeCCCCceEEEEeCC-CC---CceEEEEECCEEEEecCCC-----
Confidence 111 234443 35558887432 357999998764433333221 11 2235555789999985432
Q ss_pred CeEEEEECCCC
Q 010115 325 AETLIFDILKG 335 (518)
Q Consensus 325 ~~v~~yd~~~~ 335 (518)
..|.++|..++
T Consensus 266 ~~V~~~~~~~G 276 (349)
T 3v64_C 266 KSINSANKFTG 276 (349)
T ss_dssp TEEEEEETTTC
T ss_pred CeEEEEEccCC
Confidence 45888885443
No 291
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=47.08 E-value=3.4e+02 Score=30.16 Aligned_cols=196 Identities=11% Similarity=0.067 Sum_probs=100.4
Q ss_pred CcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeec
Q 010115 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 191 (518)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 191 (518)
.++|+++..+..-..+... +. .-..+.+ +++.+++............+|.+|..+.+-..+...
T Consensus 33 ~~l~~~~~~gg~~~~lt~~------------~~--~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~ 98 (1045)
T 1k32_A 33 DDLWEHDLKSGSTRKIVSN------------LG--VINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYF 98 (1045)
T ss_dssp TEEEEEETTTCCEEEEECS------------SS--EEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCC
T ss_pred CcEEEEECCCCcEEEeeeC------------CC--cccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccC
Confidence 3789999988776666531 11 1122222 455444443321111235799999998875554421
Q ss_pred CCCCCCCcc--eEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCC
Q 010115 192 GDIPVARSG--HTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGS 268 (518)
Q Consensus 192 ~~~p~~r~~--~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~ 268 (518)
......|.. ...+. -++++++.+..+........+|.+|+.+.+-..+. ..+. ...+... . +++.|..
T Consensus 99 ~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~---~~~~----~~~~~sp-G-~l~~~~~ 169 (1045)
T 1k32_A 99 SGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN---LGPA----THILFAD-G-RRVIGRN 169 (1045)
T ss_dssp CEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC---SCSC----SEEEEET-T-EEEEEES
T ss_pred CCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEec---CCCc----ceeeeCC-C-EEEEecc
Confidence 100000100 12222 24566666554432223457999999888776664 2111 1233334 3 4455432
Q ss_pred CC---------CCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEE
Q 010115 269 SK---------SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSV 339 (518)
Q Consensus 269 ~~---------~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 339 (518)
.. .....++|.++.. .....+... .....+.+..++++++.+...+ ...+|.+++.+..-..
T Consensus 170 ~~~~~~~~~~~g~~~~~lw~~~~~-~~~~~l~~~-----~~~v~~~~~s~d~l~~~~~~dg---~~~l~~~~~~g~~~~~ 240 (1045)
T 1k32_A 170 TFELPHWKGYRGGTRGKIWIEVNS-GAFKKIVDM-----STHVSSPVIVGHRIYFITDIDG---FGQIYSTDLDGKDLRK 240 (1045)
T ss_dssp CSCCTTSTTCCSTTCCEEEEEEET-TEEEEEECC-----SSCCEEEEEETTEEEEEECTTS---SCEEEEEETTSCSCEE
T ss_pred CCCccccccccCCCcCCEEEECCC-CCeEECcCC-----CCcccceEEeCCEEEEEEeccC---ceEEEEEeCCCCcceE
Confidence 11 1224568877655 677777321 2222333444677777765432 3568888887766665
Q ss_pred ee
Q 010115 340 AI 341 (518)
Q Consensus 340 ~~ 341 (518)
+.
T Consensus 241 l~ 242 (1045)
T 1k32_A 241 HT 242 (1045)
T ss_dssp CC
T ss_pred ec
Confidence 54
No 292
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=46.65 E-value=2e+02 Score=27.51 Aligned_cols=71 Identities=6% Similarity=0.103 Sum_probs=35.7
Q ss_pred CCEEEEEcccCCCCCcCeEEEEECCC--CceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEc
Q 010115 309 GTKWYIAGGGSRKKRHAETLIFDILK--GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSI 386 (518)
Q Consensus 309 ~~~iyv~GG~~~~~~~~~v~~yd~~~--~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~ 386 (518)
++++++.| .+ ..+.++|+.+ ..+..+...+............+.+...+ ..+++.|+.++ .+.+||+
T Consensus 188 ~~~~l~s~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~s~~~dg----~i~iwd~ 256 (447)
T 3dw8_B 188 DYETYLSA-DD-----LRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNS-CNTFVYSSSKG----TIRLCDM 256 (447)
T ss_dssp TSSEEEEE-CS-----SEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSC-TTEEEEEETTS----CEEEEET
T ss_pred CCCEEEEe-CC-----CeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCC-CcEEEEEeCCC----eEEEEEC
Confidence 45666665 32 3588899873 23333221111111112223344443222 14677777654 5888888
Q ss_pred ccCC
Q 010115 387 EKNE 390 (518)
Q Consensus 387 ~~~~ 390 (518)
.+.+
T Consensus 257 ~~~~ 260 (447)
T 3dw8_B 257 RASA 260 (447)
T ss_dssp TTCS
T ss_pred cCCc
Confidence 7765
No 293
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=46.09 E-value=2.2e+02 Score=27.78 Aligned_cols=73 Identities=16% Similarity=0.151 Sum_probs=43.3
Q ss_pred CCEEEEEccc----CCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEE
Q 010115 309 GTKWYIAGGG----SRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVL 384 (518)
Q Consensus 309 ~~~iyv~GG~----~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~y 384 (518)
++++|+.-+. +.+...++++++|+.+.+-..--.. ...-.+ +.+..+++..||+.-+. .++|.+|
T Consensus 291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v------g~~~~~-lavs~D~~~~ly~tn~~----~~~VsVi 359 (386)
T 3sjl_D 291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM------GHEIDS-INVSQDEKPLLYALSTG----DKTLYIH 359 (386)
T ss_dssp TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE------EEEECE-EEECSSSSCEEEEEETT----TTEEEEE
T ss_pred CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC------CCCcce-EEECCCCCeEEEEEcCC----CCeEEEE
Confidence 6799997431 1223457899999998776543211 111123 33443445578875432 3489999
Q ss_pred EcccCCcc
Q 010115 385 SIEKNESS 392 (518)
Q Consensus 385 d~~~~~w~ 392 (518)
|..+.+-.
T Consensus 360 D~~t~k~~ 367 (386)
T 3sjl_D 360 DAESGEEL 367 (386)
T ss_dssp ETTTCCEE
T ss_pred ECCCCcEE
Confidence 99887743
No 294
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=46.05 E-value=1.9e+02 Score=26.94 Aligned_cols=220 Identities=11% Similarity=0.064 Sum_probs=117.0
Q ss_pred CcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCceeEEEEECCC----CcEEE
Q 010115 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTET----ECWSV 187 (518)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t----~~W~~ 187 (518)
+++.++|+.+.....+.+. ...-++++.. ++.||+.-.. ...++++++.+ ..-+.
T Consensus 10 ~~I~~i~~~~~~~~~~~~~-------------~~~p~g~~~d~~~~~ly~~D~~------~~~I~~~~~~g~~~~~~~~~ 70 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPN-------------LRNVVALDTEVASNRIYWSDLS------QRMICSTQLDRAHGVSSYDT 70 (316)
T ss_dssp SSEEEEETTSCCCEEEECS-------------CSSEEEEEEETTTTEEEEEETT------TTEEEEEEC--------CEE
T ss_pred CeEEEEECCCcceEehhcC-------------CCceEEEEEEeCCCEEEEEECC------CCcEEEEECCCCCCCcccEE
Confidence 4688889888766554331 1123455554 5789998543 23689999876 22232
Q ss_pred eeecCCCCCCCcceEEEE--ECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEE-CCcEEEE
Q 010115 188 VEAKGDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLI 264 (518)
Q Consensus 188 ~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv 264 (518)
+.. ..+..+ ..+++ .++.||+.-. ..+.++++|+....-+.+.. ..+..|+ ..++. .++.||+
T Consensus 71 ~~~-~~~~~p---~glavd~~~~~ly~~d~------~~~~I~~~~~~g~~~~~~~~-~~~~~P~---~iavdp~~g~ly~ 136 (316)
T 1ijq_A 71 VIS-RDIQAP---DGLAVDWIHSNIYWTDS------VLGTVSVADTKGVKRKTLFR-ENGSKPR---AIVVDPVHGFMYW 136 (316)
T ss_dssp EEC-SSCSCC---CEEEEETTTTEEEEEET------TTTEEEEEETTSSSEEEEEE-CTTCCEE---EEEEETTTTEEEE
T ss_pred EEe-CCCCCc---CEEEEeecCCeEEEEEC------CCCEEEEEeCCCCceEEEEE-CCCCCcc---eEEeCCCCCEEEE
Confidence 221 112222 34555 3689999732 23568899987654443321 1222232 34444 3555887
Q ss_pred EcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCCCceEEeec
Q 010115 265 FGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAIT 342 (518)
Q Consensus 265 ~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 342 (518)
..-.. ...|++++++...-+.+... . -..-.+.++. +++||+.-.. ...|+++|++...-+.+..
T Consensus 137 ~d~~~----~~~I~~~~~dG~~~~~~~~~---~-~~~P~gla~d~~~~~lY~~D~~-----~~~I~~~d~dg~~~~~~~~ 203 (316)
T 1ijq_A 137 TDWGT----PAKIKKGGLNGVDIYSLVTE---N-IQWPNGITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILE 203 (316)
T ss_dssp EECSS----SCEEEEEETTSCCEEEEECS---S-CSCEEEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEEE
T ss_pred EccCC----CCeEEEEcCCCCCeEEEEEC---C-CCCceEEEEeccCCEEEEEECC-----CCeEEEEecCCCceEEEee
Confidence 75211 24799999876544444321 1 1112244443 6799998543 2569999998654444432
Q ss_pred CCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 343 SPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 343 ~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
.... ...-+++++. .+.||+.--. .+.|.++|+.+.+
T Consensus 204 ~~~~---~~~P~giav~----~~~ly~~d~~----~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 204 DEKR---LAHPFSLAVF----EDKVFWTDII----NEAIFSANRLTGS 240 (316)
T ss_dssp CTTT---TSSEEEEEEE----TTEEEEEETT----TTEEEEEETTTCC
T ss_pred cCCc---cCCcEEEEEE----CCEEEEEECC----CCeEEEEeCCCCc
Confidence 1111 1122344442 2567775532 3478888876554
No 295
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=44.79 E-value=3.5e+02 Score=29.64 Aligned_cols=196 Identities=8% Similarity=0.041 Sum_probs=91.4
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCc
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 235 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 235 (518)
++++++.|+.++ .|..||..+.+-... .+....-.+++...+++++.|+.+ ..+.++|+.+.+
T Consensus 28 dg~~lAsgs~Dg------~I~lw~~~~~~~~~~-----~~~~~~V~~l~fspg~~L~S~s~D------~~v~lWd~~~~~ 90 (902)
T 2oaj_A 28 TQNLLAIATVTG------EVHIYGQQQVEVVIK-----LEDRSAIKEMRFVKGIYLVVINAK------DTVYVLSLYSQK 90 (902)
T ss_dssp TTTEEEEEETTS------EEEEECSTTCEEEEE-----CSSCCCEEEEEEETTTEEEEEETT------CEEEEEETTTCS
T ss_pred CCCEEEEEeCCC------EEEEEeCCCcEEEEE-----cCCCCCEEEEEEcCCCEEEEEECc------CeEEEEECCCCc
Confidence 456667776543 577777665543221 111111123333335555555543 348888988765
Q ss_pred EEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCC-----CCCCCC--cceEEEEE
Q 010115 236 WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRG-----FHPSPR--AGCCGVLC 308 (518)
Q Consensus 236 W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~-----~~p~~r--~~~~~~~~ 308 (518)
-...- ..+ ..-.+++...+..+++.|+.++ .|..||+++..-....... ..+..+ .-.+++..
T Consensus 91 ~~~~~---~~~--~~V~~v~~sp~g~~l~sgs~dg-----~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~s 160 (902)
T 2oaj_A 91 VLTTV---FVP--GKITSIDTDASLDWMLIGLQNG-----SMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWN 160 (902)
T ss_dssp EEEEE---ECS--SCEEEEECCTTCSEEEEEETTS-----CEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEE
T ss_pred EEEEE---cCC--CCEEEEEECCCCCEEEEEcCCC-----cEEEEECCCCccccceeccccccccccccCCCCeEEEEEc
Confidence 43221 111 1112222333332566665543 4899999877643221100 001111 11223333
Q ss_pred C--CEEEEEcccCCCCCcCeEEEEECCCCceEEeecCC--CCCCC---------C-CCCceEEEEeeCCccEEEEEcCCC
Q 010115 309 G--TKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSP--SSSVT---------S-NKGFTLVLVQHKEKDFLVAFGGIK 374 (518)
Q Consensus 309 ~--~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~--~~~~~---------~-r~~~s~~~~~~~~~~~l~v~GG~~ 374 (518)
. ..+++.|+.+ ..+ ++|+.+.+-....... ...+. . ......+.+.. ++..++.|+.+
T Consensus 161 p~~~~~l~~g~~d-----g~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp--dg~~lasgs~D 232 (902)
T 2oaj_A 161 PRDIGTVLISYEY-----VTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP--NSLHIITIHED 232 (902)
T ss_dssp TTEEEEEEEECSS-----CEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT--TSSEEEEEETT
T ss_pred cCCCCEEEEEeCC-----CcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC--CCCEEEEEECC
Confidence 2 3566666543 247 9999887654322111 00000 0 01123333432 24466777765
Q ss_pred CCCCCcEEEEEcccCC
Q 010115 375 KEPSNQVEVLSIEKNE 390 (518)
Q Consensus 375 ~~~~~~v~~yd~~~~~ 390 (518)
+ .+.+||+.+.+
T Consensus 233 g----~i~lWd~~~g~ 244 (902)
T 2oaj_A 233 N----SLVFWDANSGH 244 (902)
T ss_dssp C----CEEEEETTTCC
T ss_pred C----eEEEEECCCCc
Confidence 4 57888876543
No 296
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=43.63 E-value=3.3e+02 Score=29.04 Aligned_cols=142 Identities=9% Similarity=0.007 Sum_probs=71.6
Q ss_pred eeEEEEECCCCcE--EEeeecCCCCCCCcceEEEE-EC-CEEEEEcccCCCCcccCcEEEEEcCCC--cE--EEeecCCC
Q 010115 173 VSVWTFDTETECW--SVVEAKGDIPVARSGHTVVR-AS-SVLILFGGEDGKRRKLNDLHMFDLKSL--TW--LPLHCTGT 244 (518)
Q Consensus 173 ~~v~~yd~~t~~W--~~~~~~~~~p~~r~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W--~~~~~~g~ 244 (518)
..+|+.++.+..= ..+.. -+.......... -+ ..|++..... ..++++++|+.+. .+ +.+...
T Consensus 247 ~~v~~~~lgt~~~~~~lv~~---~~~~~~~~~~~~SpDg~~l~~~~~~~----~~~~l~~~d~~~~~~~~~~~~l~~~-- 317 (751)
T 2xe4_A 247 NKVWRHVMGKLQSEDVCLYE---EHNPLFSAFMYKAADTNTLCIGSQSP----ETAEVHLLDLRKGNAHNTLEIVRPR-- 317 (751)
T ss_dssp EEEEEEETTSCGGGCEEEEE---CCCTTCEEEEEECTTSSEEEEEEECS----SCEEEEEEESSSCTTCCCEEESSCC--
T ss_pred CEEEEEECCCCchhcEEEEe---cCCCceEEEEEECCCCCEEEEEecCC----CCceEEEEECCCCCCCceeEEeecC--
Confidence 4788888877541 12211 122222222222 23 3555544322 2468999999875 46 555311
Q ss_pred CCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCC-CeEEE-eecCCCCCCCCcceEEEEECCEEEEEcccCCCC
Q 010115 245 GPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET-MIWTR-IKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKK 322 (518)
Q Consensus 245 ~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~-~~W~~-v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 322 (518)
...+ .+......++.||+..-.+ ......++.+|..+ ..|+. +-.. ............++.|++..-..+
T Consensus 318 ~~~~--~~s~~~~~g~~l~~~t~~~-~a~~~~L~~~d~~~~~~~~~~li~~---~~~~~l~~~~~~~~~lv~~~~~~g-- 389 (751)
T 2xe4_A 318 EKGV--RYDVQMHGTSHLVILTNEG-GAVNHKLLIAPRGQPSDWSHVLVDH---SEDVFMESIAVRSNYLVVAGRRAG-- 389 (751)
T ss_dssp CTTC--CEEEEEETTTEEEEEECTT-TCTTCEEEEEETTSTTCCCCEEECC---CSSEEEEEEEECSSEEEEEEEETT--
T ss_pred CCCc--eEEEeeeeCCEEEEEeCCC-CCCCcEEEEEcCCCcccceeeEECC---CCCcEEEEEEEECCEEEEEEEeCC--
Confidence 1111 1222213355577776443 11235799999876 68876 5432 111111223334677777654332
Q ss_pred CcCeEEEEEC
Q 010115 323 RHAETLIFDI 332 (518)
Q Consensus 323 ~~~~v~~yd~ 332 (518)
...++++|+
T Consensus 390 -~~~l~~~dl 398 (751)
T 2xe4_A 390 -LTRIWTMMA 398 (751)
T ss_dssp -EEEEEEEEC
T ss_pred -EEEEEEEec
Confidence 356888886
No 297
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=43.53 E-value=2.5e+02 Score=27.62 Aligned_cols=144 Identities=16% Similarity=0.083 Sum_probs=76.3
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCcccCcEEEEEcCC
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS 233 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t 233 (518)
++.||+.--. ..+.++|+.+++.+.+.. ...+ -..+++. ++.||+....+.. ....+..++...
T Consensus 149 ~g~Lyv~d~~-------~~I~~id~~~~~v~~~~~----~~~~-P~~ia~d~~G~~lyvad~~~~~--~~~~v~~~~~~g 214 (430)
T 3tc9_A 149 HNHLYLVGEQ-------HPTRLIDFEKEYVSTVYS----GLSK-VRTICWTHEADSMIITNDQNNN--DRPNNYILTRES 214 (430)
T ss_dssp EEEEEEEEBT-------EEEEEEETTTTEEEEEEC----CCSC-EEEEEECTTSSEEEEEECCSCT--TSEEEEEEEGGG
T ss_pred CCeEEEEeCC-------CcEEEEECCCCEEEEEec----CCCC-cceEEEeCCCCEEEEEeCCCCc--ccceEEEEeCCC
Confidence 4788887321 579999999998887753 1111 1223332 3459988643322 123456666532
Q ss_pred CcEE---EeecCCCCCCCCCCcEEEEEC-CcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-
Q 010115 234 LTWL---PLHCTGTGPSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC- 308 (518)
Q Consensus 234 ~~W~---~~~~~g~~p~~r~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~- 308 (518)
.|. .+. .... -+.+++.. +..||+.--. .+.|++|++++..-..+...+....|+ ..++.
T Consensus 215 -~~~~~~~l~---~~~~---p~giavdp~~g~lyv~d~~-----~~~V~~~~~~~~~~~~~~~~~~~~~P~---gia~~p 279 (430)
T 3tc9_A 215 -GFKVITELT---KGQN---CNGAETHPINGELYFNSWN-----AGQVFRYDFTTQETTPLFTIQDSGWEF---HIQFHP 279 (430)
T ss_dssp -TSCSEEEEE---ECSS---CCCEEECTTTCCEEEEETT-----TTEEEEEETTTTEEEEEEECSSSSCCE---EEEECT
T ss_pred -ceeeeeeec---cCCC---ceEEEEeCCCCEEEEEECC-----CCEEEEEECCCCcEEEEEEcCCCCcce---eEEEcC
Confidence 232 232 2222 23455554 4447876422 246999999877654444332111121 23332
Q ss_pred CC-EEEEEcccCCCCCcCeEEEEECC
Q 010115 309 GT-KWYIAGGGSRKKRHAETLIFDIL 333 (518)
Q Consensus 309 ~~-~iyv~GG~~~~~~~~~v~~yd~~ 333 (518)
++ .||+.--.. ..|++++.+
T Consensus 280 dG~~lyv~d~~~-----~~I~~~~~d 300 (430)
T 3tc9_A 280 SGNYAYIVVVNQ-----HYILRSDYD 300 (430)
T ss_dssp TSSEEEEEETTT-----TEEEEEEEE
T ss_pred CCCEEEEEECCC-----CEEEEEeCC
Confidence 34 599885322 457777654
No 298
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=42.28 E-value=1.6e+02 Score=30.95 Aligned_cols=154 Identities=14% Similarity=0.209 Sum_probs=75.3
Q ss_pred eEEEEECCEEEEEcCcCCCCCCceeEEEEECCCC-cEEEeeec---CCCCCCCcceEEEE-ECCEEEEEcccCCCCcccC
Q 010115 150 HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETE-CWSVVEAK---GDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLN 224 (518)
Q Consensus 150 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~-~W~~~~~~---~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~ 224 (518)
-+++..++++|+|=|. .+|+++.... ........ ..+|. ....+... .++++|+|=| +
T Consensus 447 DAit~~rg~~yfFKg~--------~yWr~~~~~~~~~~P~~Is~~wp~LP~-~IDAA~~~~~~~k~yFFkG--------~ 509 (631)
T 1ck7_A 447 DGIAQIRGEIFFFKDR--------FIWRTVTPRDKPMGPLLVATFWPELPE-KIDAVYEAPQEEKAVFFAG--------N 509 (631)
T ss_dssp SEEEECSSSEEEECSS--------EEEEESCTTSCCEEEEEGGGTCTTSCS-SCSBCCEETTTTEEEEEET--------T
T ss_pred ceeEecCCcEEEEcCC--------EEEEEcCCCCCCCCceeccccCCCCCc-cceEEEEECCCCEEEEEec--------C
Confidence 3455668899999664 4888876552 22222111 12332 23322222 2578999954 3
Q ss_pred cEEEEEcCC--CcE-EEeecCCCCCC--CCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEE-----EeecCC
Q 010115 225 DLHMFDLKS--LTW-LPLHCTGTGPS--PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWT-----RIKIRG 294 (518)
Q Consensus 225 ~~~~yd~~t--~~W-~~~~~~g~~p~--~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~-----~v~~~~ 294 (518)
..|+|+-.+ ..+ ..+...| +|. .+...+...-.++.+|+|-| +..|+||..+++=. .+.. .
T Consensus 510 ~yWry~~~~l~~GYPk~Is~~G-~P~~~~~IDAAf~~~~~gktYFFkG-------~~ywryd~~~~~vd~gYPk~i~~-~ 580 (631)
T 1ck7_A 510 EYWIYSASTLERGYPKPLTSLG-LPPDVQRVDAAFNWSKNKKTYIFAG-------DKFWRYNEVKKKMDPGFPKLIAD-A 580 (631)
T ss_dssp EEEEEETTEECTTCCEEGGGGT-CCTTCCCCCBCCCCTTTCEEEEEET-------TEEEEEETTTTEECTTCCEETTT-S
T ss_pred EEEEECCCccccCCCccchhcC-CCCCCCcceeEEEecCCCeEEEEEC-------CEEEEEcCCcccccCCCCcchHh-h
Confidence 478888521 001 1121111 222 12222221113344888876 37999997665311 1110 0
Q ss_pred CCCCCCcceEEEEEC--CEEEEEcccCCCCCcCeEEEEECCCCc
Q 010115 295 FHPSPRAGCCGVLCG--TKWYIAGGGSRKKRHAETLIFDILKGE 336 (518)
Q Consensus 295 ~~p~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~v~~yd~~~~~ 336 (518)
-+..+..-.++.... +++|++-| +..|+||..+.+
T Consensus 581 w~G~p~~iDAAf~~~~~g~~YFFkG-------~~Ywr~d~~~~~ 617 (631)
T 1ck7_A 581 WNAIPDNLDAVVDLQGGGHSYFFKG-------AYYLKLENQSLK 617 (631)
T ss_dssp CSSCCTTCCEEECCTTSCBCEEEET-------TEEECCBTTBTT
T ss_pred cCCCCCCCcEeEEEcCCCeEEEEEC-------CEEEEEeCccce
Confidence 001122233444443 78999977 346777765543
No 299
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=41.27 E-value=3.6e+02 Score=28.86 Aligned_cols=216 Identities=13% Similarity=0.127 Sum_probs=102.8
Q ss_pred CEEEEEcCcCCC-CCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCc-cceEEEEE---CCEEEEEcCcCCCCCCce
Q 010115 99 NKMIVVGGESGN-GLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPAC-RGHSLISW---GKKVLLVGGKTDSGSDRV 173 (518)
Q Consensus 99 ~~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~---~~~iyv~GG~~~~~~~~~ 173 (518)
+.+|+..|.... .....+++=+=...+|+++..... .+...+.+ ..+.+++. .+.+|+.+-. .
T Consensus 88 ~~~~~~~g~~~~~~~~~~i~~S~DgG~TW~~~~~~~~-----~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~-------~ 155 (763)
T 3a0f_A 88 DRLYLAQGDYVQWDPWAAFLVSDDRGKTFKQYRSPVP-----MGANDMGRNGGERLAVNPHWTDELWFGSRT-------Q 155 (763)
T ss_dssp TCEEEEECSCTTTCSCCEEEEESSTTSSCEEEECSSC-----CCTTSTTTTSBCCEEECTTSTTCEEEECSS-------S
T ss_pred CEEEEEecccccCCCCceEEEECCCCCCceeccCCcc-----cCccccCccccceEEECCCCCCEEEEEeCC-------C
Confidence 678887653111 111233332223468999863100 00001122 12344443 3677775421 2
Q ss_pred eEEEEECCCCcEEEeeecCCCCCCC---cceEEEEE----CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCC
Q 010115 174 SVWTFDTETECWSVVEAKGDIPVAR---SGHTVVRA----SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGP 246 (518)
Q Consensus 174 ~v~~yd~~t~~W~~~~~~~~~p~~r---~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p 246 (518)
.+|+=+-.-.+|+++.. ++... .+...+.+ .+.+|+...... .+++=+-.-.+|+.+. ..|
T Consensus 156 ~l~~S~DgG~TW~~~~~---~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~g------~v~~S~DgG~tW~~~~---~~~ 223 (763)
T 3a0f_A 156 GLWRSTDRAQTWSRMNQ---LPDSSTYGIGIISVIFDPKNVGTAYVASHAVG------GLWVTWDGGANWSQVG---GQP 223 (763)
T ss_dssp CEEEESSTTSSCEECTT---SCCCSCTTTCEEEEEECSSSTTCEEEEESSTT------CEEEESSSSSSCEECT---TCC
T ss_pred cEEEECCCCcCcccccc---CcccCCCccceEEEEECCCCCCEEEEEEeCCC------eEEEECCCCCCccccC---CCc
Confidence 36654444568998863 44321 22222222 246777543211 2443333346899986 223
Q ss_pred --------------------CCCCCcEEEEECCcEEEEEcCCCC---CCCCCcEEEEEcCCCeEEEeecCCCCCC-----
Q 010115 247 --------------------SPRSNHVAALYDDKNLLIFGGSSK---SKTLNDLYSLDFETMIWTRIKIRGFHPS----- 298 (518)
Q Consensus 247 --------------------~~r~~~~~~~~~~~~lyv~GG~~~---~~~~~~v~~yd~~~~~W~~v~~~~~~p~----- 298 (518)
.+...+.+++..+..+|+...... ......+++.+-...+|+.+...+..+.
T Consensus 224 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~g~v~rS~D~G~tW~~~~~~~~~~~~~~~~ 303 (763)
T 3a0f_A 224 TQWSDWTKSIVAASGTAIQSSGPLPIKIALGKNGRLYITYSDAPGPWGVLYGEVWSYDPTNGNWKHITPSREGANTYPAP 303 (763)
T ss_dssp CSCCHHHHHHHHHHCCCCSSSSCEEEEEEECTTSCEEEEEESSCSSSCCCCEEEEEEETTTTEEEECCTTSSSSCEESCC
T ss_pred cccccccccccccccccccCCCCcceeEEECCCCcEEEEeccCCCCCCCcceeEEEEeCCCCceEECCCCCCCCcccccc
Confidence 222333443333333777632100 1123579999989999999875311000
Q ss_pred ------CCcceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCCCceEEe
Q 010115 299 ------PRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 340 (518)
Q Consensus 299 ------~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 340 (518)
+..++..+.+ .+.||+.+.... ....+++-.-...+|+.+
T Consensus 304 ~~~~~~~~gg~~~i~v~~~~~v~~~~~~~~--~~~~l~~S~DgG~tW~~~ 351 (763)
T 3a0f_A 304 TGNKKVVPGGWNGISVGNGDTVVVSTLDAN--GEDSVYLSRDAGNSWKDL 351 (763)
T ss_dssp CCCTTSCCCEEEEEEECSTBCEEEEEESCT--TSCCEEEESBTTSSEEEH
T ss_pred ccccccccCCceeEEEcCCCeEEEEecCCC--CCCCEEEECCCCCCcccC
Confidence 0113333344 356777665211 113355544457889987
No 300
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=40.48 E-value=2.4e+02 Score=26.65 Aligned_cols=218 Identities=10% Similarity=-0.017 Sum_probs=118.4
Q ss_pred CcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeec
Q 010115 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 191 (518)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 191 (518)
+.+.++++.....+.+... ...-.+++.. ++.||+.--. ...++++++.....+.+...
T Consensus 53 ~~I~~i~~~g~~~~~~~~~-------------~~~~~~l~~d~~~~~ly~~D~~------~~~I~r~~~~g~~~~~~~~~ 113 (349)
T 3v64_C 53 IDIRQVLPHRSEYTLLLNN-------------LENAIALDFHHRRELVFWSDVT------LDRILRANLNGSNVEEVVST 113 (349)
T ss_dssp SCEEEECTTSCCEEEEECS-------------CSCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEECS
T ss_pred cceEEEeCCCCeeEEeecC-------------CCceEEEEEeccccEEEEEecc------CCceEEEecCCCCceEEEeC
Confidence 4578888887776655431 1112344433 5889987432 23699999988776555421
Q ss_pred CCCCCCCcceEEEE--ECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEE-CCcEEEEEcCC
Q 010115 192 GDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGS 268 (518)
Q Consensus 192 ~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~ 268 (518)
+ +..+ .++++ .++.||+.-.. .+.++++++....-+.+.. ..+..|+ ..++. .++.||+..-.
T Consensus 114 ~-~~~p---~glavd~~~g~ly~~d~~------~~~I~~~~~dG~~~~~l~~-~~l~~P~---~iavdp~~g~ly~td~~ 179 (349)
T 3v64_C 114 G-LESP---GGLAVDWVHDKLYWTDSG------TSRIEVANLDGAHRKVLLW-QSLEKPR---AIALHPMEGTIYWTDWG 179 (349)
T ss_dssp S-CSCC---CEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEEC-TTCSCEE---EEEEETTTTEEEEEECS
T ss_pred C-CCCc---cEEEEecCCCeEEEEcCC------CCeEEEEcCCCCceEEEEe-CCCCCcc---eEEEecCcCeEEEeccC
Confidence 1 2111 33444 36899987432 3568999987654333321 1233332 33444 24557776422
Q ss_pred CCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCC
Q 010115 269 SKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSS 346 (518)
Q Consensus 269 ~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~ 346 (518)
. ...|++++++...-+.+...+ -..-.+.++. +++||+.-.. ...|+++|++...-+.+.....
T Consensus 180 ~----~~~I~r~~~dG~~~~~~~~~~----~~~PnGla~d~~~~~lY~aD~~-----~~~I~~~~~dG~~~~~~~~~~~- 245 (349)
T 3v64_C 180 N----TPRIEASSMDGSGRRIIADTH----LFWPNGLTIDYAGRRMYWVDAK-----HHVIERANLDGSHRKAVISQGL- 245 (349)
T ss_dssp S----SCEEEEEETTSCSCEESCCSS----CSCEEEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEECSSC-
T ss_pred C----CCEEEEEeCCCCCcEEEEECC----CCCcceEEEeCCCCEEEEEECC-----CCEEEEEeCCCCceEEEEeCCC-
Confidence 1 357999998765444432211 1111234443 7899998542 2569999988654444332111
Q ss_pred CCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 347 SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 347 ~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
..-+++++. .+.||+.--. .+.|..+|..+.+
T Consensus 246 ----~~P~giav~----~~~ly~td~~----~~~V~~~~~~~G~ 277 (349)
T 3v64_C 246 ----PHPFAITVF----EDSLYWTDWH----TKSINSANKFTGK 277 (349)
T ss_dssp ----SSEEEEEEE----TTEEEEEETT----TTEEEEEETTTCC
T ss_pred ----CCceEEEEE----CCEEEEecCC----CCeEEEEEccCCC
Confidence 122455542 3568876432 3468888754443
No 301
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=39.33 E-value=1.3e+02 Score=26.75 Aligned_cols=107 Identities=17% Similarity=0.207 Sum_probs=54.2
Q ss_pred ECCcEEEEEcCCCCCCCCCcEEEEEcCCCeE--EEeecC-CCCCCCCcceEEEEECCEEEEEcccCCCCCcCeEEEEECC
Q 010115 257 YDDKNLLIFGGSSKSKTLNDLYSLDFETMIW--TRIKIR-GFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDIL 333 (518)
Q Consensus 257 ~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W--~~v~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~ 333 (518)
.+++ +|+|=|. .+|+++.....+ ..+... +.+|. .--+|...++++|+|-| +..|+|+..
T Consensus 27 ~~g~-~yfFkg~-------~~Wr~~~~~~~~~p~~Is~~wpgLP~--~IDAA~~~~~~~yfFkG-------~~yw~~~~~ 89 (219)
T 1hxn_A 27 NHGA-TYVFSGS-------HYWRLDTNRDGWHSWPIAHQWPQGPS--TVDAAFSWEDKLYLIQD-------TKVYVFLTK 89 (219)
T ss_dssp TTSC-EEEEETT-------EEEESSSSSCTTCCEEGGGTCTTSCS--SCSEEEEETTEEEEEET-------TEEEEEECS
T ss_pred CCCc-EEEEeCC-------EEEEEcCCCCCCCceEhhhhccCCCC--CccEEEEECCcEEEecC-------CEEEEEeCC
Confidence 4566 8888663 577776543221 112111 11232 22344556899999977 458999865
Q ss_pred CCceEEeecCCC------CCCCC--CCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEccc
Q 010115 334 KGEWSVAITSPS------SSVTS--NKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (518)
Q Consensus 334 ~~~W~~~~~~~~------~~~~~--r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~ 388 (518)
++ .+.....|. ..|.. ...--++. ...+.+++|+|-|. ..|.||..+
T Consensus 90 ~~-~~~~~gyPk~i~~~~G~p~~~~~~~IDAA~-~~~~~gk~yfFkG~------~ywr~d~~~ 144 (219)
T 1hxn_A 90 GG-YTLVNGYPKRLEKELGSPPVISLEAVDAAF-VCPGSSRLHIMAGR------RLWWLDLKS 144 (219)
T ss_dssp SS-CEECTTCCEEHHHHHCCCSSCCCSCCCEEE-CCTTCCEEEEEETT------EEEEEEGGG
T ss_pred CC-ceecCCCCeehhhccCCCCcccccccceeE-EecCCCEEEEEeCC------EEEEEeCCC
Confidence 32 111111010 00111 11122222 22234678888885 689999765
No 302
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=38.28 E-value=2.4e+02 Score=25.92 Aligned_cols=173 Identities=14% Similarity=0.016 Sum_probs=83.4
Q ss_pred cceEEEEECCEEEEEcCcCCCCCCCcEEEEEcC--CCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCC
Q 010115 90 FNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFD--RFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTD 167 (518)
Q Consensus 90 ~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~ 167 (518)
..|+++..++.+|.+|-....+ +.- |. ......+.. -..|+++..+++||.+|-...
T Consensus 72 ~~hs~~l~~G~v~~wG~n~~Gq-lg~-----P~~~~~~v~~ia~---------------G~~hs~al~~G~v~~wG~n~~ 130 (282)
T 3qhy_B 72 NYHSLALKDGEVIAWGGNEDGQ-TTV-----PAEARSGVDAIAA---------------GAWASYALKDGKVIAWGDDSD 130 (282)
T ss_dssp SSEEEEEETTEEEEEECCTTST-TCC-----CGGGSSSEEEEEE---------------ETTEEEEEETTEEEEEECCTT
T ss_pred CCEEEEEECCEEEEeeCCCCCC-CCC-----CcccCCCeEEEEC---------------cCCEEEEEeCCeEEEecCCCC
Confidence 4466666688999999533211 110 00 112333322 134665555999999986432
Q ss_pred CCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCC
Q 010115 168 SGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPS 247 (518)
Q Consensus 168 ~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~ 247 (518)
...... .........+.. -..|+++..++.+|.+|-.... +.-.. .........+.
T Consensus 131 gqlg~~-----~~~~~~i~~i~~-------G~~~~~~l~~G~v~~wG~n~~g-qlg~p----~~~~~~v~~i~------- 186 (282)
T 3qhy_B 131 GQTTVP-----AEAQSGVTALDG-------GVYTALAVKNGGVIAWGDNYFG-QTTVP----AEAQSGVDDVA------- 186 (282)
T ss_dssp STTSCC-----GGGGSSEEEEEE-------CSSEEEEEETTEEEEEECCTTS-TTSCC----GGGGSSEEEEE-------
T ss_pred CcCCCC-----ccCCCCeEEEEc-------ccCEEEEEECCEEEEecCCCCC-CCCCc----eecCCCeEEEE-------
Confidence 111100 001122344432 2446777668999999865332 21100 00123455554
Q ss_pred CCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccC
Q 010115 248 PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGS 319 (518)
Q Consensus 248 ~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 319 (518)
.-..|++++ .+..+|.+|-......-... ........+.. -..|+++..++++|..|-..
T Consensus 187 ~G~~hs~al-~~G~v~~wG~n~~gqlg~p~----~~~~~v~~i~~-------G~~h~~al~~g~v~~wG~n~ 246 (282)
T 3qhy_B 187 GGIFHSLAL-KDGKVIAWGDNRYKQTTVPT----EALSGVSAIAS-------GEWYSLALKNGKVIAWGSSR 246 (282)
T ss_dssp ECSSEEEEE-ETTEEEEEECCTTSTTCCCG----GGGSSCCEEEE-------CSSCEEEEETTEEEEESTTC
T ss_pred ecCCEEEEE-ECCeEEEEECCCCCCCCCCc----ccCCCceEEEc-------CCCEEEEEECCEEEEecCCC
Confidence 234677777 56569999854322110000 00112222321 12344444499999998644
No 303
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A
Probab=38.25 E-value=41 Score=30.38 Aligned_cols=61 Identities=13% Similarity=0.239 Sum_probs=36.9
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEE-----EeeecCCCCCC------CcceEEEE--ECCEEEEEcccCCCCcc
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWS-----VVEAKGDIPVA------RSGHTVVR--ASSVLILFGGEDGKRRK 222 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~-----~~~~~~~~p~~------r~~~~~~~--~~~~iyv~GG~~~~~~~ 222 (518)
++++|+|-|. .+|+||..+++-. .+. . ..|.. ..-.++.. .++++|+|-|
T Consensus 129 ~~k~yfFkG~--------~yw~~d~~~~~~~~gyPk~i~-~-g~p~~~~~g~p~~iDAA~~~~~~g~~YfFkg------- 191 (227)
T 3lp9_A 129 GKEVYLFKGD--------QYARIDYGSNSMVNKEIKSIS-S-GYPCFRNTIFESGADAAFASHKTNEVYFFKD------- 191 (227)
T ss_dssp TTEEEEEETT--------EEEEEETTTTEESSSSCEEHH-H-HCGGGTTSGGGGCCSEEEECSSTTEEEEEET-------
T ss_pred CCEEEEEECC--------EEEEEeCCCccccCCCCeEHH-H-CCCCccccccCCCccEEEEcCCCceEEEEEC-------
Confidence 6899999774 5899998765421 111 0 13321 11223333 3589999955
Q ss_pred cCcEEEEEcCCC
Q 010115 223 LNDLHMFDLKSL 234 (518)
Q Consensus 223 ~~~~~~yd~~t~ 234 (518)
+..|+||..+.
T Consensus 192 -~~Ywr~d~~~~ 202 (227)
T 3lp9_A 192 -DHYARVKVTPX 202 (227)
T ss_dssp -TEEEEEECCSS
T ss_pred -CEEEEEECCcc
Confidence 35788997665
No 304
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=37.45 E-value=4.2e+02 Score=28.57 Aligned_cols=189 Identities=12% Similarity=0.002 Sum_probs=102.2
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCC----cEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCC
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRF----SWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSD 171 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~----~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~ 171 (518)
++.||+.-... +.++++++... ....+... .. ..-.++++. +++||+.-..
T Consensus 435 ~~~lY~sD~~~-----~~I~~~~l~g~~~~~~~~~vi~~----------~l--~~P~GLAvD~~~~~LY~tD~~------ 491 (791)
T 3m0c_C 435 SNRIYWSDLSQ-----RMICSTQLDRAHGVSSYDTVISR----------DI--QAPDGLAVDWIHSNIYWTDSV------ 491 (791)
T ss_dssp TTEEEEEETTT-----TEEEEEEC--------CEEEECS----------SC--SCCCEEEEETTTTEEEEEETT------
T ss_pred CCeeEEeeccc-----eeEEEEeccCCCCCcceeEEEec----------CC--CCcceeeeeecCCcEEEEecC------
Confidence 57788875422 45777777652 22222210 01 111344443 6799998432
Q ss_pred ceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCC
Q 010115 172 RVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPR 249 (518)
Q Consensus 172 ~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r 249 (518)
...|+++++....-+.+.. ..+..| .++++. ++.||+.--. ....|+++++....-+.+... .+..|+
T Consensus 492 ~~~I~v~~ldG~~~~~l~~-~~l~~P---~gIaVDp~~g~LYwtD~g-----~~~~I~~~~~dG~~~~~lv~~-~l~~P~ 561 (791)
T 3m0c_C 492 LGTVSVADTKGVKRKTLFR-ENGSKP---RAIVVDPVHGFMYWTDWG-----TPAKIKKGGLNGVDIYSLVTE-NIQWPN 561 (791)
T ss_dssp TTEEEEEETTSSSEEEEEE-CTTCCE---EEEEEETTTTEEEEEECS-----SSCEEEEEETTSCCEEEEECS-SCSCEE
T ss_pred CCeEEEEeCCCCeEEEEEe-CCCCCc---ceEEEecCCCCEEEecCC-----CCCeEEEEecCCCceEEEEeC-CCCCce
Confidence 2369999998776555543 122222 244553 5899987311 125699999876555444321 222221
Q ss_pred CCcEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecC-CCCCCCCcceEEEEECCEEEEEcccCCCCCcCeE
Q 010115 250 SNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIR-GFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAET 327 (518)
Q Consensus 250 ~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v 327 (518)
++++- .++.||+.-.. .+.|+++++....=+.+... +..+ ...++++.+++||+.--.. ..|
T Consensus 562 ---GLavD~~~~~LYwaD~~-----~~~I~~~d~dG~~~~~v~~~~~~l~---~P~glav~~~~lYwtD~~~-----~~I 625 (791)
T 3m0c_C 562 ---GITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILEDEKRLA---HPFSLAVFEDKVFWTDIIN-----EAI 625 (791)
T ss_dssp ---EEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEEECTTTTS---SEEEEEEETTEEEEEETTT-----TEE
T ss_pred ---EEEEecCCCeEEEEeCC-----CCcEEEEecCCCceEEEecCCCccC---CCCEEEEeCCEEEEEECCC-----CEE
Confidence 23333 35558887432 35799999976544444332 1222 2346666789999986432 457
Q ss_pred EEEECCCC
Q 010115 328 LIFDILKG 335 (518)
Q Consensus 328 ~~yd~~~~ 335 (518)
+++|..++
T Consensus 626 ~~~dk~tG 633 (791)
T 3m0c_C 626 FSANRLTG 633 (791)
T ss_dssp EEEETTTC
T ss_pred EEEeCCCC
Confidence 88876544
No 305
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=36.50 E-value=7.7 Score=37.94 Aligned_cols=66 Identities=14% Similarity=0.193 Sum_probs=30.7
Q ss_pred EEECCEEEEEcccCCCCcccCcEEEEEcCCC--cEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEE
Q 010115 204 VRASSVLILFGGEDGKRRKLNDLHMFDLKSL--TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLD 281 (518)
Q Consensus 204 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd 281 (518)
++.++.||+.+ .+ ..++.+|.++. .|+.-. +. ...+.++.++. +|+.++.++ .++.+|
T Consensus 6 ~v~~~~v~~gs-~d------g~v~a~d~~tG~~~W~~~~--~~-----~~s~p~~~~g~-~~v~~s~dg-----~l~a~d 65 (369)
T 2hz6_A 6 TLPETLLFVST-LD------GSLHAVSKRTGSIKWTLKE--DP-----VLQVPTHVEEP-AFLPDPNDG-----SLYTLG 65 (369)
T ss_dssp --CTTEEEEEE-TT------SEEEEEETTTCCEEEEEEC--CC-----SCCCC-----C-CEEECTTTC-----CEEEC-
T ss_pred eeeCCEEEEEc-CC------CEEEEEECCCCCEEEEecC--CC-----ceecceEcCCC-EEEEeCCCC-----EEEEEE
Confidence 34566776643 22 35889998775 476643 11 11122344555 677764433 599999
Q ss_pred cCCC--eEEE
Q 010115 282 FETM--IWTR 289 (518)
Q Consensus 282 ~~~~--~W~~ 289 (518)
.+++ .|+.
T Consensus 66 ~~tG~~~w~~ 75 (369)
T 2hz6_A 66 SKNNEGLTKL 75 (369)
T ss_dssp ----CCSEEC
T ss_pred CCCCceeeee
Confidence 8654 4653
No 306
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=35.35 E-value=1.3e+02 Score=33.98 Aligned_cols=137 Identities=15% Similarity=0.141 Sum_probs=77.5
Q ss_pred CCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecC--CCCCCCCcceEEEEE---CCEEEEEcccCCCCC
Q 010115 249 RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIR--GFHPSPRAGCCGVLC---GTKWYIAGGGSRKKR 323 (518)
Q Consensus 249 r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~--~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~ 323 (518)
-.++++....+. + ++|.-........++.|+.....|..-... +.....-.++++++. +...+|+|--. ...
T Consensus 334 q~GfSa~~t~d~-~-~~GapG~~~w~G~v~~~~~~~~~~~~~~~~~~~~~~~sylGySVa~~~~~g~~~~v~GAP~-~~~ 410 (1095)
T 3k6s_A 334 QEGFSAVFTPDG-P-VLGAVGSFTWSGGAFLYPPNMSPTFINMSQENVDMRDSYLGYSTELALWKGVQSLVLGAPR-YQH 410 (1095)
T ss_dssp CTTSSEECCTTC-C-EEEESCSTTTTBEEEECCSSSCCEEECCCSSCCCCCSCCBTSSEECCCCSSSCEEEEEETT-GGG
T ss_pred cccccceecCCc-c-eEcccccCCccceeEEecCCCcceeeccccccccccccccceeeEEeccCCceEEEEEccc-ccc
Confidence 345556666666 4 778665555566788888765444322211 111223345555442 33456776432 223
Q ss_pred cCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCC--ccEEEEEcCCCC---CCCCcEEEEEccc
Q 010115 324 HAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKE--KDFLVAFGGIKK---EPSNQVEVLSIEK 388 (518)
Q Consensus 324 ~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~--~~~l~v~GG~~~---~~~~~v~~yd~~~ 388 (518)
...+++|......|+..............|+++++.+.++ ..-|+++|.-.. .....|++|....
T Consensus 411 ~G~V~i~~~~~~~~~~~~~~~g~~~gs~fG~sva~~DvngDG~~DllvvGAP~~~~~~~~G~Vyvy~~~~ 480 (1095)
T 3k6s_A 411 TGKAVIFTQVSRQWRMKAEVTGTQIGSYFGASLCSVDVDSDGSTDLVLIGAPHYYEQTRGGQVSVCPLPR 480 (1095)
T ss_dssp TCEEEEEECCTTTCCEEEEECCSSTTSCTTSCEEEECSSSSSSCCEEEEECSSCCSSCCCBCEEEEECCS
T ss_pred cceEEEEEecCCcceEEeecccCcccCcCCceEEEEEeCCCCCccEEEECCccccCcCCCCEEEEEEeCC
Confidence 5679999988888988765444545667888888754322 234556664322 2245678876543
No 307
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=34.17 E-value=3.4e+02 Score=26.54 Aligned_cols=144 Identities=10% Similarity=0.143 Sum_probs=76.6
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCceeE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSV 175 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v 175 (518)
++.||+.--. ..+.++|+.++....+... ...-..++.. ++.||+...... .....+
T Consensus 149 ~g~Lyv~d~~------~~I~~id~~~~~v~~~~~~-------------~~~P~~ia~d~~G~~lyvad~~~~--~~~~~v 207 (430)
T 3tc9_A 149 HNHLYLVGEQ------HPTRLIDFEKEYVSTVYSG-------------LSKVRTICWTHEADSMIITNDQNN--NDRPNN 207 (430)
T ss_dssp EEEEEEEEBT------EEEEEEETTTTEEEEEECC-------------CSCEEEEEECTTSSEEEEEECCSC--TTSEEE
T ss_pred CCeEEEEeCC------CcEEEEECCCCEEEEEecC-------------CCCcceEEEeCCCCEEEEEeCCCC--cccceE
Confidence 3678887431 6789999999887776431 1111223332 355998864322 222346
Q ss_pred EEEECCCCcEE---EeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCC
Q 010115 176 WTFDTETECWS---VVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 250 (518)
Q Consensus 176 ~~yd~~t~~W~---~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~ 250 (518)
+.++... .|. .+.. . ..-+.+++. ++.||+.-- ..+.+++||+.+..-..+...+....|+
T Consensus 208 ~~~~~~g-~~~~~~~l~~---~---~~p~giavdp~~g~lyv~d~------~~~~V~~~~~~~~~~~~~~~~~~~~~P~- 273 (430)
T 3tc9_A 208 YILTRES-GFKVITELTK---G---QNCNGAETHPINGELYFNSW------NAGQVFRYDFTTQETTPLFTIQDSGWEF- 273 (430)
T ss_dssp EEEEGGG-TSCSEEEEEE---C---SSCCCEEECTTTCCEEEEET------TTTEEEEEETTTTEEEEEEECSSSSCCE-
T ss_pred EEEeCCC-ceeeeeeecc---C---CCceEEEEeCCCCEEEEEEC------CCCEEEEEECCCCcEEEEEEcCCCCcce-
Confidence 6666543 232 2221 2 222445553 578888632 2356999999877654443211211121
Q ss_pred CcEEEEEC-CcEEEEEcCCCCCCCCCcEEEEEcC
Q 010115 251 NHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFE 283 (518)
Q Consensus 251 ~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~ 283 (518)
.+++.. ++.||+.--. .+.|++++.+
T Consensus 274 --gia~~pdG~~lyv~d~~-----~~~I~~~~~d 300 (430)
T 3tc9_A 274 --HIQFHPSGNYAYIVVVN-----QHYILRSDYD 300 (430)
T ss_dssp --EEEECTTSSEEEEEETT-----TTEEEEEEEE
T ss_pred --eEEEcCCCCEEEEEECC-----CCEEEEEeCC
Confidence 344443 4448887432 3468887765
No 308
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=33.57 E-value=5e+02 Score=28.29 Aligned_cols=155 Identities=12% Similarity=0.090 Sum_probs=75.6
Q ss_pred CEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCCc
Q 010115 157 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLT 235 (518)
Q Consensus 157 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 235 (518)
++.++.|+.+ ..+..+|+.+.+-...-. .+ .. -.+++. -++..++.|+.++ .+.+||+.+.+
T Consensus 69 g~~L~S~s~D------~~v~lWd~~~~~~~~~~~---~~-~~-V~~v~~sp~g~~l~sgs~dg------~V~lwd~~~~~ 131 (902)
T 2oaj_A 69 GIYLVVINAK------DTVYVLSLYSQKVLTTVF---VP-GK-ITSIDTDASLDWMLIGLQNG------SMIVYDIDRDQ 131 (902)
T ss_dssp TTEEEEEETT------CEEEEEETTTCSEEEEEE---CS-SC-EEEEECCTTCSEEEEEETTS------CEEEEETTTTE
T ss_pred CCEEEEEECc------CeEEEEECCCCcEEEEEc---CC-CC-EEEEEECCCCCEEEEEcCCC------cEEEEECCCCc
Confidence 4455555543 268888988876432221 11 11 111222 2355566665543 47889998776
Q ss_pred EEEeecCC-----CCCC--CCCCcEEEEECC-cEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCC---CCC------
Q 010115 236 WLPLHCTG-----TGPS--PRSNHVAALYDD-KNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGF---HPS------ 298 (518)
Q Consensus 236 W~~~~~~g-----~~p~--~r~~~~~~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~---~p~------ 298 (518)
-....... ..+. ...-.+++...+ ..+++.|+.++ .+ .||+++.+-...-.... .+.
T Consensus 132 ~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg-----~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~ 205 (902)
T 2oaj_A 132 LSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYV-----TL-TYSLVENEIKQSFIYELPPFAPGGDFSEK 205 (902)
T ss_dssp EEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSC-----EE-EEETTTTEEEEEECCCBCTTCCCSTTCCC
T ss_pred cccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCC-----cE-EEECCCCceEEEEecccCCcCCCcccccc
Confidence 43221100 0000 111123444442 23566666543 47 99998875433221100 000
Q ss_pred ---CC-cceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCCCceEE
Q 010115 299 ---PR-AGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSV 339 (518)
Q Consensus 299 ---~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 339 (518)
.+ .....+.+ +++.++.|+.++. +.+||+.+.+-..
T Consensus 206 ~~~~h~~~V~~v~fspdg~~lasgs~Dg~-----i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 206 TNEKRTPKVIQSLYHPNSLHIITIHEDNS-----LVFWDANSGHMIM 247 (902)
T ss_dssp TTSCBCCCEEEEEECTTSSEEEEEETTCC-----EEEEETTTCCEEE
T ss_pred cccccCCCeEEEEEcCCCCEEEEEECCCe-----EEEEECCCCcEEE
Confidence 00 11222333 6778888876654 8999998876543
No 309
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=33.05 E-value=3.4e+02 Score=26.20 Aligned_cols=220 Identities=11% Similarity=0.071 Sum_probs=116.8
Q ss_pred CcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCceeEEEEECCCC----cEEE
Q 010115 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETE----CWSV 187 (518)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~----~W~~ 187 (518)
+++.++++....+..+... ...-.+++.. ++.||+.--.. ..|+++++... ....
T Consensus 92 ~~I~~i~l~~~~~~~~~~~-------------~~~~~~l~~d~~~~~lywsD~~~------~~I~~~~~~g~~~~~~~~~ 152 (400)
T 3p5b_L 92 HEVRKMTLDRSEYTSLIPN-------------LRNVVALDTEVASNRIYWSDLSQ------RMICSTQLDRAHGVSSYDT 152 (400)
T ss_dssp TEEEEECTTSCSCEEEECS-------------CSCEEEEEEETTTTEEEEEETTT------TEEEEEEC------CCCEE
T ss_pred ceeEEEccCCcceeEeccc-------------cCcceEEeeeeccCceEEEecCC------CeEEEEEcccCCCCCcceE
Confidence 4677788877766665431 1122444444 58999874322 36888988752 2333
Q ss_pred eeecCCCCCCCcceEEEE--ECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEE-CCcEEEE
Q 010115 188 VEAKGDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLI 264 (518)
Q Consensus 188 ~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv 264 (518)
+... .+ ..-.++++ .++.||+.-.. ...++++|++...-+.+... .+..|+ ..++. .++.||+
T Consensus 153 ~~~~-~~---~~p~glavD~~~~~lY~~d~~------~~~I~~~~~~g~~~~~l~~~-~~~~P~---~iavdp~~g~ly~ 218 (400)
T 3p5b_L 153 VISR-DI---QAPDGLAVDWIHSNIYWTDSV------LGTVSVADTKGVKRKTLFRE-NGSKPR---AIVVDPVHGFMYW 218 (400)
T ss_dssp EECS-SC---SCEEEEEEETTTTEEEEEETT------TTEEEEECTTTCSEEEEEEC-SSCCEE---EEEEETTTTEEEE
T ss_pred EEeC-CC---CCcccEEEEecCCceEEEECC------CCeEEEEeCCCCceEEEEeC-CCCCcc---eEEEecccCeEEE
Confidence 3210 11 12234444 36899998432 35688999887665554321 222232 34443 2444777
Q ss_pred EcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCCCceEEeec
Q 010115 265 FGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAIT 342 (518)
Q Consensus 265 ~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 342 (518)
.--. ....|++++++...=+.+...+ .. .-.+.++. +++||+.-.. ...|+++|++...-+.+..
T Consensus 219 td~~----~~~~I~~~~~dG~~~~~~~~~~-l~---~P~glavd~~~~~lY~aD~~-----~~~I~~~d~dG~~~~~~~~ 285 (400)
T 3p5b_L 219 TDWG----TPAKIKKGGLNGVDIYSLVTEN-IQ---WPNGITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILE 285 (400)
T ss_dssp EECS----SSCCEEEEETTSCSCEEEECSS-CS---CEEEEEEETTTTEEEEEETT-----TTEEEEEETTSCCCEEEEE
T ss_pred EeCC----CCCEEEEEeCCCCccEEEEECC-CC---ceEEEEEEeCCCEEEEEECC-----CCEEEEEeCCCCccEEEEe
Confidence 6421 1246999998765433332211 11 11234443 6899998532 3569999998765555443
Q ss_pred CCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 343 SPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 343 ~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
.+.. ....+++++. .+.||+.--. .+.|+++|..+.+
T Consensus 286 ~~~~---l~~P~gl~v~----~~~lywtd~~----~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 286 DEKR---LAHPFSLAVF----EDKVFWTDII----NEAIFSANRLTGS 322 (400)
T ss_dssp CSST---TSSEEEEEEE----TTEEEEEESS----SCSEEEEESSSCC
T ss_pred CCCC---CCCCEEEEEe----CCEEEEecCC----CCeEEEEEcCCCC
Confidence 2111 1233455553 2568876522 3468888865543
No 310
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=31.98 E-value=2.9e+02 Score=25.01 Aligned_cols=140 Identities=11% Similarity=0.135 Sum_probs=70.8
Q ss_pred EECCEEEEEcCcCCCCCCceeEEEEECC-CCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCcccCcEEEEEc
Q 010115 154 SWGKKVLLVGGKTDSGSDRVSVWTFDTE-TECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDL 231 (518)
Q Consensus 154 ~~~~~iyv~GG~~~~~~~~~~v~~yd~~-t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~ 231 (518)
..++.||+.... ..++.||+. ...|+.... ... ..+.+.. ++.||+. .. -..++.||+
T Consensus 105 ~~~~~l~v~t~~-------~~l~~~d~~g~~~~~~~~~-----~~~-~~~~~~~~~g~l~vg-t~------~~~l~~~d~ 164 (330)
T 3hxj_A 105 IFEDILYVTSMD-------GHLYAINTDGTEKWRFKTK-----KAI-YATPIVSEDGTIYVG-SN------DNYLYAINP 164 (330)
T ss_dssp EETTEEEEECTT-------SEEEEECTTSCEEEEEECS-----SCC-CSCCEECTTSCEEEE-CT------TSEEEEECT
T ss_pred EECCEEEEEecC-------CEEEEEcCCCCEEEEEcCC-----Cce-eeeeEEcCCCEEEEE-cC------CCEEEEECC
Confidence 348888875321 258999988 334765432 111 1223344 5677773 21 145888998
Q ss_pred CCC-cEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCC-CeEEEeecCCCCCCCCcceEEEEE-
Q 010115 232 KSL-TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET-MIWTRIKIRGFHPSPRAGCCGVLC- 308 (518)
Q Consensus 232 ~t~-~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~-~~W~~v~~~~~~p~~r~~~~~~~~- 308 (518)
... .|.... +... ..+.+...+..||+.. ..+++||... ..|+..... . ...+.+..
T Consensus 165 ~g~~~~~~~~-----~~~~-~~~~~~d~~g~l~v~t--------~~l~~~d~~g~~~~~~~~~~-----~-~~~~~~~~~ 224 (330)
T 3hxj_A 165 DGTEKWRFKT-----NDAI-TSAASIGKDGTIYFGS--------DKVYAINPDGTEKWNFYAGY-----W-TVTRPAISE 224 (330)
T ss_dssp TSCEEEEEEC-----SSCC-CSCCEECTTCCEEEES--------SSEEEECTTSCEEEEECCSS-----C-CCSCCEECT
T ss_pred CCCEeEEEec-----CCCc-eeeeEEcCCCEEEEEe--------CEEEEECCCCcEEEEEccCC-----c-ceeceEECC
Confidence 722 365432 1111 2223343344366643 4599999542 346544221 1 12233333
Q ss_pred CCEEEEEcccCCCCCcCeEEEEECCCCc-eEE
Q 010115 309 GTKWYIAGGGSRKKRHAETLIFDILKGE-WSV 339 (518)
Q Consensus 309 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~-W~~ 339 (518)
++.||+..- . ..+++||+.... |+.
T Consensus 225 ~g~l~v~t~-~-----~gl~~~~~~g~~~~~~ 250 (330)
T 3hxj_A 225 DGTIYVTSL-D-----GHLYAINPDGTEKWRF 250 (330)
T ss_dssp TSCEEEEET-T-----TEEEEECTTSCEEEEE
T ss_pred CCeEEEEcC-C-----CeEEEECCCCCEeEEe
Confidence 457777531 1 348888875544 443
No 311
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=30.20 E-value=4.8e+02 Score=27.03 Aligned_cols=181 Identities=15% Similarity=0.153 Sum_probs=91.1
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCC-CCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCC
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIP-VARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKS 233 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p-~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t 233 (518)
+++.+..++.++ .|..||.++ .+..+. ..++ ..+..++++. -++++++.||.++ .+.+||+.+
T Consensus 96 dG~~LAs~s~dg------~V~iwd~~~-~l~~l~--~~~~~~~~sv~svafSPDG~~LAsgs~DG------tVkIWd~~~ 160 (588)
T 2j04_A 96 IDDWMAVLSNNG------NVSVFKDNK-MLTNLD--SKGNLSSRTYHCFEWNPIESSIVVGNEDG------ELQFFSIRK 160 (588)
T ss_dssp SSSCEEEEETTS------CEEEEETTE-EEEECC--CSSCSTTTCEEEEEECSSSSCEEEEETTS------EEEEEECCC
T ss_pred CCCEEEEEeCCC------cEEEEeCCc-eeeecc--CCCccccccEEEEEEcCCCCEEEEEcCCC------EEEEEECCC
Confidence 566666666543 466777544 444433 2233 2334555554 4678888888754 377888877
Q ss_pred Cc--------EEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCe----EEEeecCCCCCCCCc
Q 010115 234 LT--------WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI----WTRIKIRGFHPSPRA 301 (518)
Q Consensus 234 ~~--------W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~----W~~v~~~~~~p~~r~ 301 (518)
+. ...+...... ..-.-.+.+...++ ++.++.+ +.+..+|+.++. |+.+... .. ..
T Consensus 161 ~~l~~~~~i~l~ti~~~~~g-h~~~V~sVawSPdg--Laass~D-----~tVrlWd~~~~~~~~~~~tL~~~---h~-~~ 228 (588)
T 2j04_A 161 NSENTPEFYFESSIRLSDAG-SKDWVTHIVWYEDV--LVAALSN-----NSVFSMTVSASSHQPVSRMIQNA---SR-RK 228 (588)
T ss_dssp CTTTCCCCEEEEEEECSCTT-CCCCEEEEEEETTE--EEEEETT-----CCEEEECCCSSSSCCCEEEEECC---CS-SC
T ss_pred Cccccccceeeeeeeccccc-ccccEEEEEEcCCc--EEEEeCC-----CeEEEEECCCCccccceeeeccc---cc-Cc
Confidence 63 2332210000 11122334455666 4455544 348888886654 4444221 11 11
Q ss_pred ceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCC
Q 010115 302 GCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE 376 (518)
Q Consensus 302 ~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~ 376 (518)
-.+++..+ ..++.++ + ..+..||+.+..-...... -......+.+.+..+...++.++.++.
T Consensus 229 V~svaFsg-~~LASa~-~-----~tIkLWd~~~~~~~~~~~g------h~~~V~~va~~~s~d~~~La~a~edG~ 290 (588)
T 2j04_A 229 ITDLKIVD-YKVVLTC-P-----GYVHKIDLKNYSISSLKTG------SLENFHIIPLNHEKESTILLMSNKTSY 290 (588)
T ss_dssp CCCEEEET-TEEEEEC-S-----SEEEEEETTTTEEEEEECS------CCSCCCEEEETTCSSCEEEEECSSCEE
T ss_pred EEEEEEEC-CEEEEEe-C-----CeEEEEECCCCeEEEEEcC------CCceEEEEEeeeCCCCCEEEEEcCCCC
Confidence 12222234 4444444 1 4699999998777544311 112234445522234456777776543
No 312
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=29.83 E-value=3.8e+02 Score=25.70 Aligned_cols=148 Identities=11% Similarity=0.052 Sum_probs=76.1
Q ss_pred ceeEEEEECCC--CcEEEeeecCC-CC-CCCcceEEEEEC---C--EEEEEcccCCCCcccCcEEEEEcCCCcEEEeecC
Q 010115 172 RVSVWTFDTET--ECWSVVEAKGD-IP-VARSGHTVVRAS---S--VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT 242 (518)
Q Consensus 172 ~~~v~~yd~~t--~~W~~~~~~~~-~p-~~r~~~~~~~~~---~--~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 242 (518)
...+++||+.+ .+-+++...+. .. ..-.-|.+.+.. + +|||+--.... ....++.+|+.+...+.+...
T Consensus 82 ~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~--s~ielf~~d~~~~~~~~~~~~ 159 (355)
T 3sre_A 82 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSS--STVEVFKFQEEEKSLLHLKTI 159 (355)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTC--CEEEEEEEETTTTEEEEEEEE
T ss_pred CCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCC--CeEEEEEEECCCCEEEEEecc
Confidence 44699999883 45566654331 11 122335555432 3 68887544221 234577777777766666432
Q ss_pred CCCCCCCCCcEEEEECCcEEEEEcCC--CC----------CCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE--
Q 010115 243 GTGPSPRSNHVAALYDDKNLLIFGGS--SK----------SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-- 308 (518)
Q Consensus 243 g~~p~~r~~~~~~~~~~~~lyv~GG~--~~----------~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-- 308 (518)
...+..+..-.++.-++. +|+-+.. .. ......+++||+. +.+.+... ... .-+.+.-
T Consensus 160 ~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~~--l~~---pNGia~spD 231 (355)
T 3sre_A 160 RHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEG--FDF---ANGINISPD 231 (355)
T ss_dssp CCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEEE--ESS---EEEEEECTT
T ss_pred ccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEeecC--Ccc---cCcceECCC
Confidence 223333334333344444 7775432 11 1234679999984 44444321 011 1122322
Q ss_pred CCEEEEEcccCCCCCcCeEEEEECCC
Q 010115 309 GTKWYIAGGGSRKKRHAETLIFDILK 334 (518)
Q Consensus 309 ~~~iyv~GG~~~~~~~~~v~~yd~~~ 334 (518)
+..+|+.--.. ..+++|+...
T Consensus 232 g~~lYvadt~~-----~~I~~~~~~~ 252 (355)
T 3sre_A 232 GKYVYIAELLA-----HKIHVYEKHA 252 (355)
T ss_dssp SSEEEEEEGGG-----TEEEEEEECT
T ss_pred CCEEEEEeCCC-----CeEEEEEECC
Confidence 34788875432 4689998763
No 313
>3v4v_A Integrin alpha-4; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_A*
Probab=29.74 E-value=96 Score=32.48 Aligned_cols=134 Identities=14% Similarity=0.127 Sum_probs=72.9
Q ss_pred CCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCC--CCCCCCcceEEEEE--C--C-EEEEEcccCCC
Q 010115 249 RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRG--FHPSPRAGCCGVLC--G--T-KWYIAGGGSRK 321 (518)
Q Consensus 249 r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~--~~p~~r~~~~~~~~--~--~-~iyv~GG~~~~ 321 (518)
..++++....+ .+|+|.-........++.|+.....|....... .......++++++. + + .-+|+|.-..
T Consensus 166 q~G~Sa~~~~d--~~v~GApG~~~w~G~v~~~~~~~~~~~~~~~~~~~~~~~sy~GySva~gD~ngDG~~DlvvGAP~~- 242 (597)
T 3v4v_A 166 QAGISSFYTKD--LIVMGAPGSSYWTGSLFVYNITTNKYKAFLDKQNQVKFGSYLGYSVGAGHFRSQHTTEVVGGAPQH- 242 (597)
T ss_dssp CBTSSEEECSS--EEEEEETTHHHHTBEEEEEETTTTBCCBBCCTTCCSCTTCCBTSSEEEECSSCTTSCEEEEEETTG-
T ss_pred cCceeeEecCC--ceEEccccccccccceEEEEccCceeeecccccccccccCcCccEEEEEEECCCCCeEEEEecccc-
Confidence 34555555554 467775432233457889999988887643221 11123455565543 1 2 3466664322
Q ss_pred CCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCc--cEEEEEcCCCC---CCCCcEEEEEc
Q 010115 322 KRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEK--DFLVAFGGIKK---EPSNQVEVLSI 386 (518)
Q Consensus 322 ~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~--~~l~v~GG~~~---~~~~~v~~yd~ 386 (518)
.....+++|......|.............+++.++++...+++ .-| ++|.... .....+++|--
T Consensus 243 ~~~G~V~v~~~~~~~~~~~~~l~G~~~g~~fG~sva~~D~ngDG~~Dl-vVGap~~~~~~~~G~v~vy~~ 311 (597)
T 3v4v_A 243 EQIGKAYIFSIDEKELNILHEMKGKKLGSYFGASVCAVDLNADGFSDL-LVGAPMQSTIREEGRVFVYIN 311 (597)
T ss_dssp GGTCEEEEEEECSSSEEEEEEEECSSTTCCTTSEEEEECTTCSSSCEE-EEEETTCCSSSCCCEEEEEEE
T ss_pred cCCceEEEEecCCCceeEEEEecccccCCCCcceEEEEeeCCCCCceE-EEEcccccCCCcCCeEEEEEE
Confidence 2346789998777889876544333345667788876643332 234 4443211 12446777743
No 314
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=29.07 E-value=5e+02 Score=26.89 Aligned_cols=109 Identities=12% Similarity=0.105 Sum_probs=58.6
Q ss_pred CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCC-CCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC
Q 010115 207 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGP-SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM 285 (518)
Q Consensus 207 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p-~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~ 285 (518)
+++.++.++.++. +.++|.++ .+..+. ...+ ..+..++++...++.+++.||.++ .+..||+.++
T Consensus 96 dG~~LAs~s~dg~------V~iwd~~~-~l~~l~--~~~~~~~~sv~svafSPDG~~LAsgs~DG-----tVkIWd~~~~ 161 (588)
T 2j04_A 96 IDDWMAVLSNNGN------VSVFKDNK-MLTNLD--SKGNLSSRTYHCFEWNPIESSIVVGNEDG-----ELQFFSIRKN 161 (588)
T ss_dssp SSSCEEEEETTSC------EEEEETTE-EEEECC--CSSCSTTTCEEEEEECSSSSCEEEEETTS-----EEEEEECCCC
T ss_pred CCCEEEEEeCCCc------EEEEeCCc-eeeecc--CCCccccccEEEEEEcCCCCEEEEEcCCC-----EEEEEECCCC
Confidence 5666666665543 66777543 444433 1222 234556666655554777787655 4888998776
Q ss_pred e--------EEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCc
Q 010115 286 I--------WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE 336 (518)
Q Consensus 286 ~--------W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 336 (518)
. ...+..... .....-.+.+...+. ++.++.+. .+..+|+.++.
T Consensus 162 ~l~~~~~i~l~ti~~~~~-gh~~~V~sVawSPdg-Laass~D~-----tVrlWd~~~~~ 213 (588)
T 2j04_A 162 SENTPEFYFESSIRLSDA-GSKDWVTHIVWYEDV-LVAALSNN-----SVFSMTVSASS 213 (588)
T ss_dssp TTTCCCCEEEEEEECSCT-TCCCCEEEEEEETTE-EEEEETTC-----CEEEECCCSSS
T ss_pred ccccccceeeeeeecccc-cccccEEEEEEcCCc-EEEEeCCC-----eEEEEECCCCc
Confidence 3 233321100 011122333444555 67776653 37888887755
No 315
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=28.30 E-value=3.8e+02 Score=25.23 Aligned_cols=120 Identities=11% Similarity=0.131 Sum_probs=59.0
Q ss_pred CEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCC---CCcccCcEEEEEc
Q 010115 157 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDG---KRRKLNDLHMFDL 231 (518)
Q Consensus 157 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~---~~~~~~~~~~yd~ 231 (518)
..+|+.-.... ....+.+++||+.+.+-... ++..... .++.. +..+|+..-... .+...+.+..||+
T Consensus 16 ~~~yv~~~~~~-~~~d~~v~v~D~~t~~~~~~-----i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~ 88 (361)
T 2oiz_A 16 NRIYVMDSVFM-HLTESRVHVYDYTNGKFLGM-----VPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDA 88 (361)
T ss_dssp GEEEEEECCGG-GGGGCEEEEEETTTCCEEEE-----EECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred CEEEEECCCCC-ccccCeEEEEECCCCeEEEE-----ecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEEC
Confidence 45666543211 11124789999988875432 2222222 33332 458888752211 1122356899999
Q ss_pred CCCcE-EEeecCCCCC-CCCCCcEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCeE
Q 010115 232 KSLTW-LPLHCTGTGP-SPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIW 287 (518)
Q Consensus 232 ~t~~W-~~~~~~g~~p-~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 287 (518)
.+.+- ..+...+... ....-+.+++. +++.+|+.... ..+.+.++|+++++-
T Consensus 89 ~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~----~~~~v~v~d~~~~~~ 143 (361)
T 2oiz_A 89 DKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNAS----PATSIGIVDVAKGDY 143 (361)
T ss_dssp TTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEES----SSEEEEEEETTTTEE
T ss_pred cCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCC----CCCeEEEEECCCCcE
Confidence 87553 3332110000 01112233333 56667775321 124689999887753
No 316
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=25.58 E-value=6.2e+02 Score=26.78 Aligned_cols=104 Identities=13% Similarity=0.142 Sum_probs=59.0
Q ss_pred CCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCC----CCCCCcEEEEEcCCCeEEEeecCCCC-CCCCcceEEEE
Q 010115 233 SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSK----SKTLNDLYSLDFETMIWTRIKIRGFH-PSPRAGCCGVL 307 (518)
Q Consensus 233 t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~----~~~~~~v~~yd~~~~~W~~v~~~~~~-p~~r~~~~~~~ 307 (518)
-.+|+.+. .+|.....|.+++..+..+|+..+... ......+++++-...+|+.+...+.. +..+++++.+.
T Consensus 231 G~tW~~~~---~~p~~~~~~~~~~~~~~~l~~~~~d~~g~y~~~~~g~v~~s~d~G~tW~~i~~~~~~~~~~~~~~~~i~ 307 (737)
T 2cn3_A 231 GVTWKAVP---GQPKGLLPHHGVLASNGMLYITYGDTCGPYDGNGKGQVWKFNTRTGEWIDITPIPYSSSDNRFCFAGLA 307 (737)
T ss_dssp TSCCEECT---TCCCSSEEEEEEECTTSEEEEEEESSCCSSCCSCCEEEEEEETTTCCEEECCSSCTTSTTCCSEEEEEE
T ss_pred CCceEECC---CCCCcccceEEEECCCCeEEEEecCCCCccccccCceEEEEeCCCCCEEEccCCCCCCcccccccccEE
Confidence 46899986 455443334444432444777643221 11345799999999999999764211 02345555444
Q ss_pred E----CCEEEEEcccCCCCCcCeEEEEECCCCceEEe
Q 010115 308 C----GTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 340 (518)
Q Consensus 308 ~----~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 340 (518)
+ .+.||+.+.... .....+++-.-...+|+.+
T Consensus 308 v~p~~~~~ly~~~~~~~-~~~~~l~~S~DgG~tW~~~ 343 (737)
T 2cn3_A 308 VDRQNPDIIMVTSMNAW-WPDEYIFRSTDGGATWKNI 343 (737)
T ss_dssp ECTTCTTCEEEEEECCC-SSCCCEEEESSTTSSCEES
T ss_pred EcCCCCCEEEEEecccC-CCCccEEEeCCCCccccch
Confidence 4 357888765311 1112355554556788887
No 317
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=23.45 E-value=4.8e+02 Score=24.71 Aligned_cols=22 Identities=5% Similarity=0.108 Sum_probs=16.6
Q ss_pred EEEEEcccCCCCCcCeEEEEECCCCce
Q 010115 311 KWYIAGGGSRKKRHAETLIFDILKGEW 337 (518)
Q Consensus 311 ~iyv~GG~~~~~~~~~v~~yd~~~~~W 337 (518)
.+++.|+.++ .+.+||+.+...
T Consensus 240 ~~l~s~~~dg-----~i~iwd~~~~~~ 261 (447)
T 3dw8_B 240 NTFVYSSSKG-----TIRLCDMRASAL 261 (447)
T ss_dssp TEEEEEETTS-----CEEEEETTTCSS
T ss_pred cEEEEEeCCC-----eEEEEECcCCcc
Confidence 6888887654 388999887664
No 318
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=22.80 E-value=4.7e+02 Score=24.44 Aligned_cols=144 Identities=14% Similarity=0.042 Sum_probs=72.9
Q ss_pred CcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcce
Q 010115 224 NDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGC 303 (518)
Q Consensus 224 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~ 303 (518)
..+.++|+.+.+-...- .. ...-.+++...+..+++.++. +.+.+++..+..-...... .......
T Consensus 157 ~~i~iwd~~~~~~~~~~---~~--~~~V~~v~fspdg~~l~s~s~------~~~~~~~~~~~~~~~~~~~---~~~~~~v 222 (365)
T 4h5i_A 157 AIMRIIDPSDLTEKFEI---ET--RGEVKDLHFSTDGKVVAYITG------SSLEVISTVTGSCIARKTD---FDKNWSL 222 (365)
T ss_dssp CEEEEEETTTTEEEEEE---EC--SSCCCEEEECTTSSEEEEECS------SCEEEEETTTCCEEEEECC---CCTTEEE
T ss_pred CEEEEeECCCCcEEEEe---CC--CCceEEEEEccCCceEEeccc------eeEEEEEeccCcceeeeec---CCCCCCE
Confidence 35888999887654432 11 111223444444435666542 3477888776654433222 1111112
Q ss_pred EEE--EECCEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcE
Q 010115 304 CGV--LCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQV 381 (518)
Q Consensus 304 ~~~--~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v 381 (518)
..+ .-+++.++.++..... ...++.+|.............. .........+.+.. ++.+++.|+.++ .|
T Consensus 223 ~~v~fspdg~~l~~~s~d~~~-~~~i~~~~~~~~~~~~~~~~~~--~~~~~~V~~~~~Sp--dg~~lasgs~D~----~V 293 (365)
T 4h5i_A 223 SKINFIADDTVLIAASLKKGK-GIVLTKISIKSGNTSVLRSKQV--TNRFKGITSMDVDM--KGELAVLASNDN----SI 293 (365)
T ss_dssp EEEEEEETTEEEEEEEESSSC-CEEEEEEEEETTEEEEEEEEEE--ESSCSCEEEEEECT--TSCEEEEEETTS----CE
T ss_pred EEEEEcCCCCEEEEEecCCcc-eeEEeecccccceecceeeeee--cCCCCCeEeEEECC--CCCceEEEcCCC----EE
Confidence 222 2378888877654321 1245677776665544321100 01112233444442 345778888764 58
Q ss_pred EEEEcccCC
Q 010115 382 EVLSIEKNE 390 (518)
Q Consensus 382 ~~yd~~~~~ 390 (518)
.+||.++.+
T Consensus 294 ~iwd~~~~~ 302 (365)
T 4h5i_A 294 ALVKLKDLS 302 (365)
T ss_dssp EEEETTTTE
T ss_pred EEEECCCCc
Confidence 899987654
No 319
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=22.50 E-value=4.7e+02 Score=24.28 Aligned_cols=68 Identities=10% Similarity=0.053 Sum_probs=35.2
Q ss_pred EECCcEEEEEcCCCCCCCCCc-EEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCCCcCeEEEEECC
Q 010115 256 LYDDKNLLIFGGSSKSKTLND-LYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDIL 333 (518)
Q Consensus 256 ~~~~~~lyv~GG~~~~~~~~~-v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~ 333 (518)
...+..+++.|+.++ . +..||..+.+-...-..+... ..-.+++.. ++++++.|+.++ .+.+||+.
T Consensus 203 ~s~~g~~l~s~s~d~-----~~v~iwd~~~~~~~~~~~~g~h~--~~v~~~~~s~~~~~l~s~s~d~-----~v~iw~~~ 270 (355)
T 3vu4_A 203 LNRKSDMVATCSQDG-----TIIRVFKTEDGVLVREFRRGLDR--ADVVDMKWSTDGSKLAVVSDKW-----TLHVFEIF 270 (355)
T ss_dssp ECTTSSEEEEEETTC-----SEEEEEETTTCCEEEEEECTTCC--SCEEEEEECTTSCEEEEEETTC-----EEEEEESS
T ss_pred ECCCCCEEEEEeCCC-----CEEEEEECCCCcEEEEEEcCCCC--CcEEEEEECCCCCEEEEEECCC-----EEEEEEcc
Confidence 333333677776543 4 888998765433221111011 111222222 567777777653 47788876
Q ss_pred CC
Q 010115 334 KG 335 (518)
Q Consensus 334 ~~ 335 (518)
..
T Consensus 271 ~~ 272 (355)
T 3vu4_A 271 ND 272 (355)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 320
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=21.54 E-value=6.9e+02 Score=25.89 Aligned_cols=157 Identities=16% Similarity=0.167 Sum_probs=86.2
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE----CCEEEEEcccCC-----------CC
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA----SSVLILFGGEDG-----------KR 220 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~-----------~~ 220 (518)
+..+||--.. ...|.+.|+.+.+-..+-. +|....-|.++.. .+++|+-+-... ..
T Consensus 101 G~~lfVnd~~------~~rVavIdl~t~~~~~ii~---ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~ 171 (595)
T 1fwx_A 101 GRFLFMNDKA------NTRVARVRCDVMKCDAILE---IPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVA 171 (595)
T ss_dssp EEEEEEEETT------TTEEEEEETTTTEEEEEEE---CSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG
T ss_pred CCEEEEEcCC------CCEEEEEECCCceEeeEEe---CCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccccc
Confidence 4578884322 2369999999988666544 6766667777752 467777753311 12
Q ss_pred cccCcEEEEEcCCCc--EEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCC-----------------------------
Q 010115 221 RKLNDLHMFDLKSLT--WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSS----------------------------- 269 (518)
Q Consensus 221 ~~~~~~~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~----------------------------- 269 (518)
+..+.+-+.|.++.+ |+..- .+ ......+..+++.+|+.--.+
T Consensus 172 ~~~~~vtvID~~t~~v~~qI~V-gg-----~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v 245 (595)
T 1fwx_A 172 NYVNVFTAVDADKWEVAWQVLV-SG-----NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAI 245 (595)
T ss_dssp GEEEEEEEEETTTTEEEEEEEE-SS-----CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHH
T ss_pred ccCceEEEEECCCCeEEEEEEe-CC-----CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEec
Confidence 344578889998764 54332 11 112233333445444443211
Q ss_pred ---CCCCCCcEEEEEcCCCeEEE-eecCCCCCCCCcceEEEEE-C-CEEEEEcccCCCCCcCeEEEEECCCC
Q 010115 270 ---KSKTLNDLYSLDFETMIWTR-IKIRGFHPSPRAGCCGVLC-G-TKWYIAGGGSRKKRHAETLIFDILKG 335 (518)
Q Consensus 270 ---~~~~~~~v~~yd~~~~~W~~-v~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~v~~yd~~~~ 335 (518)
.....+.+-+.|..+.+.+. +... |.+..-|++.+- + ..+|+.+..+ +.+.+||.++.
T Consensus 246 ~~Gk~~~i~~V~VID~~~~~~~~~~~~I---pvg~~PhGv~~sPDGk~v~V~~~~s-----~~VsVid~~~~ 309 (595)
T 1fwx_A 246 AAGDYQELNGVKVVDGRKEASSLFTRYI---PIANNPHGCNMAPDKKHLCVAGKLS-----PTVTVLDVTRF 309 (595)
T ss_dssp HHTCSEEETTEEEEECSGGGCCSSEEEE---EEESSCCCEEECTTSSEEEEECTTS-----SBEEEEEGGGH
T ss_pred cCCCeeEECcEEEEeCcccCCceeEEEE---ecCCCceEEEEcCCCCEEEEeCCCC-----CeEEEEECccc
Confidence 01123568888887632222 1111 333344565554 3 4577766544 45899998865
Done!