BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010117
         (518 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1TE4|A Chain A, Solution Structure Of Mth187. Ontario Centre For
           Structural Proteomics Target Mth0187_1_111; Northeast
           Structural Genomics Target Tt740
          Length = 131

 Score = 32.0 bits (71), Expect = 0.76,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 6/82 (7%)

Query: 387 FPPSIEISTRQLCQLWIAEGLIPGNYNSERMVEEYLKELS-NSGFIQVGKIRAGGTIKAC 445
           F P +E  + +  ++  A   I GN+  ER VE  +K L  +SGF++ G  R+   I   
Sbjct: 44  FEPLLESLSNEDWRIRGAAAWIIGNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQIGG- 102

Query: 446 YVPSYVYAALRWVAEK-MGFVR 466
                V AA+  +AE   GF R
Sbjct: 103 ---ERVRAAMEKLAETGTGFAR 121


>pdb|2XQV|A Chain A, The X-Ray Structure Of The Zn(Ii) Bound Znua From
           Salmonella Enterica
 pdb|2XY4|A Chain A, X-Ray Structure Of Znua-Wt From Salmonella Enterica
          Length = 288

 Score = 32.0 bits (71), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 5/99 (5%)

Query: 288 IWHDLVEFLPDNQNGSRVLITLLWFELQ---KGEKIQPDSVLVGGPMIRIKHEAWQFFIL 344
           I   LVE +P  Q+ +++   L  FE Q     +++  +   + G    + H+A+ ++  
Sbjct: 136 IHEKLVELMP--QSRAKLDANLKDFEAQLAATDKQVGNELAPLKGKGYFVFHDAYGYYEK 193

Query: 345 HYGNTPLENYIGQKAIPTILSQIHSVWELPFHLKVCCIY 383
           HYG TPL ++     I     ++H +       K  C++
Sbjct: 194 HYGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVF 232


>pdb|2XH8|A Chain A, X-Ray Structure Of  119-141 Znua Deletion Mutant  From
           Salmonella Enterica
          Length = 291

 Score = 30.4 bits (67), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 5/99 (5%)

Query: 288 IWHDLVEFLPDNQNGSRVLITLLWFELQ---KGEKIQPDSVLVGGPMIRIKHEAWQFFIL 344
           I   LVE +P  Q+ +++   L  FE Q     +++  +   + G    + H+A+ ++  
Sbjct: 139 IHEKLVELMP--QSRAKLDANLKDFEAQLAATDKQVGNELAPLKGKGYFVFHDAYGYYEK 196

Query: 345 HYGNTPLENYIGQKAIPTILSQIHSVWELPFHLKVCCIY 383
           HYG TPL ++     I     ++H +       K  C++
Sbjct: 197 HYGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVF 235


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.140    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,660,387
Number of Sequences: 62578
Number of extensions: 668441
Number of successful extensions: 1215
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1205
Number of HSP's gapped (non-prelim): 12
length of query: 518
length of database: 14,973,337
effective HSP length: 103
effective length of query: 415
effective length of database: 8,527,803
effective search space: 3539038245
effective search space used: 3539038245
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)