Query 010117
Match_columns 518
No_of_seqs 355 out of 2823
Neff 8.8
Searched_HMMs 46136
Date Thu Mar 28 21:15:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010117.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010117hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 6.2E-66 1.4E-70 567.5 32.2 472 23-518 7-590 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 1.4E-40 3E-45 330.0 11.0 234 172-410 1-284 (287)
3 PLN03210 Resistant to P. syrin 100.0 2.8E-32 6.1E-37 315.4 27.9 256 172-463 189-506 (1153)
4 PRK04841 transcriptional regul 99.1 8.1E-09 1.8E-13 118.7 21.4 259 176-460 19-333 (903)
5 TIGR03015 pepcterm_ATPase puta 98.6 7.2E-07 1.6E-11 87.4 15.3 97 190-294 43-145 (269)
6 PF13401 AAA_22: AAA domain; P 98.6 1.7E-07 3.6E-12 81.1 9.3 114 190-311 4-125 (131)
7 cd01128 rho_factor Transcripti 98.6 1.1E-07 2.4E-12 91.4 7.5 94 190-284 16-114 (249)
8 COG2909 MalT ATP-dependent tra 98.6 4.5E-06 9.8E-11 90.0 19.6 262 176-461 24-340 (894)
9 PF05729 NACHT: NACHT domain 98.5 2.4E-07 5.2E-12 83.4 8.2 114 191-314 1-132 (166)
10 PRK00411 cdc6 cell division co 98.5 1.2E-06 2.6E-11 90.9 14.0 111 172-284 35-149 (394)
11 PRK09376 rho transcription ter 98.4 3.8E-07 8.2E-12 91.6 7.1 101 178-284 158-267 (416)
12 PF13173 AAA_14: AAA domain 98.4 5.1E-07 1.1E-11 78.0 6.1 101 190-315 2-102 (128)
13 TIGR02928 orc1/cdc6 family rep 98.4 4.9E-06 1.1E-10 85.4 14.2 108 172-284 20-140 (365)
14 cd00009 AAA The AAA+ (ATPases 98.3 6.3E-06 1.4E-10 71.9 11.9 122 172-313 3-131 (151)
15 TIGR00767 rho transcription te 98.2 5.6E-06 1.2E-10 83.7 9.2 94 190-284 168-266 (415)
16 PF13191 AAA_16: AAA ATPase do 98.0 1.1E-05 2.3E-10 74.2 6.7 42 172-213 5-47 (185)
17 PRK06893 DNA replication initi 97.9 1.8E-05 4E-10 75.6 5.6 38 190-229 39-76 (229)
18 PTZ00202 tuzin; Provisional 97.8 0.00026 5.7E-09 72.0 13.3 149 160-322 258-411 (550)
19 TIGR00635 ruvB Holliday juncti 97.8 0.00033 7.3E-09 69.9 14.4 129 172-314 9-142 (305)
20 PRK00080 ruvB Holliday junctio 97.8 0.00066 1.4E-08 68.6 16.1 42 172-213 30-74 (328)
21 COG1474 CDC6 Cdc6-related prot 97.8 0.00017 3.6E-09 73.5 11.7 107 172-284 22-134 (366)
22 PF01637 Arch_ATPase: Archaeal 97.8 8.2E-05 1.8E-09 70.7 8.6 56 172-231 4-59 (234)
23 PRK11331 5-methylcytosine-spec 97.7 0.00019 4.1E-09 74.0 10.0 116 172-298 180-299 (459)
24 smart00382 AAA ATPases associa 97.7 0.00024 5.1E-09 61.3 9.2 86 191-284 3-89 (148)
25 KOG2543 Origin recognition com 97.7 0.00049 1.1E-08 68.2 12.1 108 172-284 11-126 (438)
26 PRK05564 DNA polymerase III su 97.7 0.0007 1.5E-08 67.9 13.4 119 173-313 10-134 (313)
27 TIGR03420 DnaA_homol_Hda DnaA 97.7 9.7E-05 2.1E-09 70.3 6.8 53 173-229 23-75 (226)
28 PRK08116 hypothetical protein; 97.6 0.00031 6.7E-09 68.6 9.8 102 191-311 115-220 (268)
29 PRK08118 topology modulation p 97.6 3.3E-05 7.2E-10 69.9 2.7 35 191-225 2-37 (167)
30 TIGR02903 spore_lon_C ATP-depe 97.6 0.00024 5.1E-09 77.6 9.7 138 172-312 159-334 (615)
31 PRK13342 recombination factor 97.6 0.00028 6E-09 73.6 9.2 96 179-307 27-124 (413)
32 PF00004 AAA: ATPase family as 97.6 0.00043 9.2E-09 59.5 8.8 68 193-284 1-69 (132)
33 PTZ00112 origin recognition co 97.5 0.00072 1.6E-08 74.2 12.1 110 172-284 760-880 (1164)
34 PRK12402 replication factor C 97.5 0.00052 1.1E-08 69.5 10.7 39 172-212 20-58 (337)
35 PF05621 TniB: Bacterial TniB 97.5 0.0011 2.5E-08 64.6 11.8 108 173-284 43-156 (302)
36 COG2256 MGS1 ATPase related to 97.5 0.00037 8.1E-09 69.6 8.6 93 189-312 47-143 (436)
37 PF04665 Pox_A32: Poxvirus A32 97.5 0.00053 1.1E-08 65.2 9.1 38 191-230 14-51 (241)
38 PLN03025 replication factor C 97.5 0.0051 1.1E-07 61.9 16.7 117 173-311 19-138 (319)
39 PRK07003 DNA polymerase III su 97.4 0.0014 3.1E-08 71.4 12.5 133 172-312 21-159 (830)
40 COG3903 Predicted ATPase [Gene 97.4 0.00013 2.8E-09 73.2 3.6 249 189-462 13-317 (414)
41 KOG2028 ATPase related to the 97.4 0.00064 1.4E-08 66.9 8.1 99 188-312 160-261 (554)
42 PRK08727 hypothetical protein; 97.4 0.00031 6.7E-09 67.3 6.0 37 190-228 41-77 (233)
43 PRK13341 recombination factor 97.3 0.001 2.2E-08 73.6 10.2 98 178-308 42-142 (725)
44 TIGR02640 gas_vesic_GvpN gas v 97.3 0.0039 8.5E-08 60.8 12.8 58 172-238 7-64 (262)
45 PRK14961 DNA polymerase III su 97.3 0.0033 7.1E-08 64.4 12.6 131 172-311 21-158 (363)
46 PHA02544 44 clamp loader, smal 97.2 0.0022 4.7E-08 64.4 10.9 114 172-312 26-141 (316)
47 cd01393 recA_like RecA is a b 97.2 0.003 6.5E-08 60.1 11.1 128 183-313 12-170 (226)
48 PRK14957 DNA polymerase III su 97.2 0.0029 6.3E-08 67.6 12.0 113 172-309 21-156 (546)
49 PRK08181 transposase; Validate 97.2 0.00057 1.2E-08 66.6 5.9 99 191-311 107-208 (269)
50 PRK00440 rfc replication facto 97.2 0.0042 9.2E-08 62.3 12.4 40 172-213 22-61 (319)
51 TIGR00678 holB DNA polymerase 97.2 0.0053 1.2E-07 56.6 12.1 40 272-311 95-135 (188)
52 PRK12323 DNA polymerase III su 97.2 0.0043 9.3E-08 66.8 12.5 136 172-314 21-167 (700)
53 PF05496 RuvB_N: Holliday junc 97.2 0.0016 3.5E-08 60.8 8.3 57 162-220 22-78 (233)
54 PRK10536 hypothetical protein; 97.2 0.002 4.3E-08 61.7 9.1 38 172-213 60-97 (262)
55 PRK14960 DNA polymerase III su 97.2 0.026 5.6E-07 61.1 18.4 132 172-311 20-157 (702)
56 TIGR01242 26Sp45 26S proteasom 97.2 0.0013 2.9E-08 67.4 8.6 47 172-220 127-184 (364)
57 COG1373 Predicted ATPase (AAA+ 97.2 0.003 6.5E-08 65.4 11.0 96 192-315 39-134 (398)
58 PRK14963 DNA polymerase III su 97.2 0.00063 1.4E-08 72.3 6.1 134 172-310 19-154 (504)
59 PRK06645 DNA polymerase III su 97.1 0.034 7.3E-07 59.2 18.8 139 172-315 26-172 (507)
60 PRK04195 replication factor C 97.1 0.0025 5.4E-08 67.9 10.3 114 172-311 19-139 (482)
61 PRK14949 DNA polymerase III su 97.1 0.0042 9E-08 69.1 11.7 129 172-311 21-158 (944)
62 PRK06526 transposase; Provisio 97.1 0.00061 1.3E-08 65.9 4.6 23 191-213 99-121 (254)
63 PRK12377 putative replication 97.0 0.0033 7.1E-08 60.5 9.2 101 190-311 101-205 (248)
64 PRK08084 DNA replication initi 97.0 0.002 4.3E-08 61.8 7.8 38 190-229 45-82 (235)
65 PF00308 Bac_DnaA: Bacterial d 97.0 0.0019 4.2E-08 61.1 7.5 101 187-311 31-139 (219)
66 PRK05642 DNA replication initi 97.0 0.0011 2.3E-08 63.6 5.8 37 190-228 45-81 (234)
67 PRK12608 transcription termina 97.0 0.0022 4.9E-08 64.7 8.0 107 175-284 119-231 (380)
68 PRK09183 transposase/IS protei 97.0 0.0011 2.4E-08 64.4 5.7 22 191-212 103-124 (259)
69 PRK07261 topology modulation p 97.0 0.0024 5.2E-08 58.0 7.4 66 192-284 2-68 (171)
70 PRK14958 DNA polymerase III su 96.9 0.0088 1.9E-07 63.8 12.4 132 172-311 21-158 (509)
71 PRK06921 hypothetical protein; 96.9 0.0014 3.1E-08 63.9 5.9 37 190-228 117-154 (266)
72 cd01123 Rad51_DMC1_radA Rad51_ 96.9 0.0038 8.3E-08 59.7 8.8 98 186-284 15-126 (235)
73 PHA00729 NTP-binding motif con 96.9 0.0043 9.3E-08 58.4 8.7 33 178-212 7-39 (226)
74 PRK08691 DNA polymerase III su 96.9 0.01 2.2E-07 64.7 12.5 40 172-212 21-60 (709)
75 PRK09087 hypothetical protein; 96.9 0.0032 6.9E-08 59.9 7.9 24 190-213 44-67 (226)
76 TIGR00763 lon ATP-dependent pr 96.9 0.027 5.9E-07 63.6 16.5 47 172-220 325-375 (775)
77 cd01133 F1-ATPase_beta F1 ATP 96.9 0.0027 5.8E-08 61.7 7.2 92 191-284 70-174 (274)
78 PRK07952 DNA replication prote 96.9 0.0053 1.1E-07 58.9 9.2 117 175-311 84-204 (244)
79 PRK09361 radB DNA repair and r 96.9 0.0043 9.3E-08 59.0 8.5 98 182-283 15-117 (225)
80 PRK06835 DNA replication prote 96.9 0.004 8.7E-08 62.5 8.6 53 174-228 167-219 (329)
81 PRK14962 DNA polymerase III su 96.9 0.0089 1.9E-07 63.1 11.5 41 172-213 19-59 (472)
82 PRK14088 dnaA chromosomal repl 96.9 0.0035 7.6E-08 65.8 8.4 100 190-310 130-235 (440)
83 PRK05541 adenylylsulfate kinas 96.8 0.0046 9.9E-08 56.4 8.2 36 189-226 6-41 (176)
84 cd03247 ABCC_cytochrome_bd The 96.8 0.011 2.5E-07 53.9 10.7 120 191-316 29-161 (178)
85 TIGR02237 recomb_radB DNA repa 96.8 0.0047 1E-07 58.0 8.3 97 183-283 5-107 (209)
86 PRK14969 DNA polymerase III su 96.8 0.019 4.2E-07 61.6 13.8 40 172-212 21-60 (527)
87 cd01120 RecA-like_NTPases RecA 96.8 0.0094 2E-07 52.9 9.7 40 192-233 1-40 (165)
88 PF07728 AAA_5: AAA domain (dy 96.8 0.0017 3.6E-08 56.7 4.4 87 193-296 2-89 (139)
89 PF01695 IstB_IS21: IstB-like 96.8 0.00085 1.8E-08 61.3 2.6 73 190-284 47-119 (178)
90 TIGR00362 DnaA chromosomal rep 96.7 0.0048 1E-07 64.3 8.4 100 190-311 136-241 (405)
91 cd03238 ABC_UvrA The excision 96.7 0.014 3E-07 53.2 10.3 119 190-318 21-155 (176)
92 PRK11889 flhF flagellar biosyn 96.7 0.021 4.6E-07 58.1 12.4 102 189-297 240-347 (436)
93 PRK14956 DNA polymerase III su 96.7 0.0093 2E-07 62.4 10.1 139 172-314 23-164 (484)
94 PF13207 AAA_17: AAA domain; P 96.7 0.0012 2.6E-08 56.0 3.0 21 192-212 1-21 (121)
95 PF13504 LRR_7: Leucine rich r 96.7 0.00083 1.8E-08 35.8 1.3 17 500-516 1-17 (17)
96 cd03214 ABC_Iron-Siderophores_ 96.7 0.017 3.6E-07 52.9 10.8 121 191-315 26-161 (180)
97 cd01131 PilT Pilus retraction 96.7 0.005 1.1E-07 57.3 7.4 110 191-317 2-114 (198)
98 PF02562 PhoH: PhoH-like prote 96.7 0.0097 2.1E-07 55.3 9.1 129 173-313 6-157 (205)
99 PRK14951 DNA polymerase III su 96.7 0.018 4E-07 62.5 12.5 134 172-310 21-162 (618)
100 PRK07940 DNA polymerase III su 96.7 0.018 3.9E-07 59.4 11.9 41 172-212 10-58 (394)
101 PRK14955 DNA polymerase III su 96.7 0.02 4.3E-07 59.5 12.4 136 172-309 21-164 (397)
102 CHL00181 cbbX CbbX; Provisiona 96.7 0.0078 1.7E-07 59.5 8.9 22 191-212 60-81 (287)
103 PRK08939 primosomal protein Dn 96.7 0.0074 1.6E-07 60.1 8.7 117 172-310 136-259 (306)
104 PRK00149 dnaA chromosomal repl 96.7 0.004 8.7E-08 65.8 7.2 87 176-284 134-222 (450)
105 cd03223 ABCD_peroxisomal_ALDP 96.7 0.024 5.3E-07 51.1 11.3 115 191-316 28-152 (166)
106 COG1136 SalX ABC-type antimicr 96.6 0.024 5.1E-07 53.4 11.3 126 191-318 32-209 (226)
107 TIGR02880 cbbX_cfxQ probable R 96.6 0.0072 1.6E-07 59.6 8.4 101 192-312 60-170 (284)
108 PF13671 AAA_33: AAA domain; P 96.6 0.0095 2.1E-07 52.0 8.3 21 192-212 1-21 (143)
109 PRK03992 proteasome-activating 96.6 0.023 5E-07 58.8 12.4 42 172-213 136-188 (389)
110 PF08423 Rad51: Rad51; InterP 96.6 0.0064 1.4E-07 59.0 7.7 95 189-284 37-144 (256)
111 TIGR02397 dnaX_nterm DNA polym 96.6 0.032 6.8E-07 56.9 13.3 40 172-212 19-58 (355)
112 PRK07994 DNA polymerase III su 96.6 0.013 2.9E-07 63.8 10.8 131 172-311 21-158 (647)
113 PRK04296 thymidine kinase; Pro 96.6 0.0058 1.3E-07 56.5 7.0 114 191-313 3-117 (190)
114 PRK06696 uridine kinase; Valid 96.6 0.0029 6.2E-08 60.2 5.2 41 172-212 3-44 (223)
115 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.6 0.023 5E-07 49.9 10.2 102 191-315 27-130 (144)
116 TIGR03345 VI_ClpV1 type VI sec 96.5 0.0096 2.1E-07 67.5 9.6 129 172-311 571-718 (852)
117 TIGR02639 ClpA ATP-dependent C 96.5 0.018 3.9E-07 64.6 11.7 94 190-298 484-579 (731)
118 CHL00095 clpC Clp protease ATP 96.5 0.017 3.6E-07 65.7 11.2 110 190-311 539-661 (821)
119 KOG0924 mRNA splicing factor A 96.5 0.018 4E-07 61.1 10.4 141 173-323 358-524 (1042)
120 COG1484 DnaC DNA replication p 96.5 0.0081 1.8E-07 58.2 7.5 75 189-284 104-178 (254)
121 PRK14970 DNA polymerase III su 96.5 0.031 6.7E-07 57.4 12.2 40 172-212 22-61 (367)
122 PRK14087 dnaA chromosomal repl 96.5 0.0084 1.8E-07 63.1 8.0 103 189-311 140-248 (450)
123 PRK14964 DNA polymerase III su 96.5 0.033 7.1E-07 58.9 12.3 135 172-314 18-159 (491)
124 PF13177 DNA_pol3_delta2: DNA 96.5 0.059 1.3E-06 48.4 12.4 117 175-313 5-143 (162)
125 TIGR02858 spore_III_AA stage I 96.5 0.023 5E-07 55.5 10.4 134 175-317 97-234 (270)
126 KOG2004 Mitochondrial ATP-depe 96.5 0.023 5.1E-07 60.9 11.0 111 122-237 352-480 (906)
127 PRK07667 uridine kinase; Provi 96.5 0.0041 8.8E-08 57.7 5.0 37 176-212 3-39 (193)
128 PRK12422 chromosomal replicati 96.4 0.0075 1.6E-07 63.3 7.5 73 190-284 141-213 (445)
129 PRK08903 DnaA regulatory inact 96.4 0.0074 1.6E-07 57.5 6.8 25 189-213 41-65 (227)
130 cd03216 ABC_Carb_Monos_I This 96.4 0.014 3E-07 52.6 8.2 113 191-314 27-144 (163)
131 cd03222 ABC_RNaseL_inhibitor T 96.4 0.027 5.8E-07 51.4 10.0 101 191-316 26-136 (177)
132 COG0466 Lon ATP-dependent Lon 96.4 0.096 2.1E-06 56.6 15.3 97 172-284 328-428 (782)
133 KOG2227 Pre-initiation complex 96.4 0.017 3.7E-07 59.1 9.2 109 172-284 155-267 (529)
134 cd03228 ABCC_MRP_Like The MRP 96.4 0.023 4.9E-07 51.5 9.4 120 191-316 29-159 (171)
135 PRK04301 radA DNA repair and r 96.4 0.023 5E-07 57.1 10.3 103 181-284 93-209 (317)
136 TIGR00602 rad24 checkpoint pro 96.4 0.012 2.7E-07 64.0 8.7 42 172-213 89-133 (637)
137 PRK05896 DNA polymerase III su 96.4 0.018 4E-07 61.9 9.9 130 172-309 21-156 (605)
138 PF00485 PRK: Phosphoribulokin 96.4 0.019 4.1E-07 53.3 8.9 83 192-277 1-87 (194)
139 TIGR03346 chaperone_ClpB ATP-d 96.3 0.029 6.2E-07 64.0 11.9 110 190-311 595-717 (852)
140 cd03281 ABC_MSH5_euk MutS5 hom 96.3 0.045 9.8E-07 51.5 11.4 123 190-318 29-160 (213)
141 PRK10865 protein disaggregatio 96.3 0.025 5.5E-07 64.4 11.3 110 190-311 598-720 (857)
142 cd03246 ABCC_Protease_Secretio 96.3 0.028 6E-07 51.1 9.6 123 191-317 29-161 (173)
143 PRK06620 hypothetical protein; 96.3 0.0086 1.9E-07 56.5 6.3 23 191-213 45-67 (214)
144 cd01394 radB RadB. The archaea 96.3 0.018 3.9E-07 54.4 8.6 99 182-284 11-114 (218)
145 PRK14952 DNA polymerase III su 96.3 0.05 1.1E-06 58.9 12.8 134 172-314 18-161 (584)
146 PRK14950 DNA polymerase III su 96.3 0.023 5E-07 62.0 10.5 132 172-310 21-158 (585)
147 TIGR02238 recomb_DMC1 meiotic 96.3 0.02 4.3E-07 57.2 9.1 102 182-284 88-202 (313)
148 COG4608 AppF ABC-type oligopep 96.3 0.027 5.8E-07 54.1 9.5 126 190-318 39-176 (268)
149 PLN03187 meiotic recombination 96.3 0.02 4.3E-07 57.8 9.2 102 182-284 118-232 (344)
150 PRK09270 nucleoside triphospha 96.3 0.021 4.6E-07 54.4 9.0 26 187-212 30-55 (229)
151 COG0470 HolB ATPase involved i 96.3 0.04 8.8E-07 55.2 11.4 117 173-311 7-148 (325)
152 PF00448 SRP54: SRP54-type pro 96.3 0.0091 2E-07 55.5 6.1 57 190-248 1-58 (196)
153 PF05673 DUF815: Protein of un 96.2 0.075 1.6E-06 50.5 12.1 97 172-298 32-133 (249)
154 PRK14971 DNA polymerase III su 96.2 0.38 8.1E-06 52.7 19.3 40 172-212 22-61 (614)
155 TIGR03499 FlhF flagellar biosy 96.2 0.016 3.6E-07 57.1 8.0 87 189-282 193-281 (282)
156 TIGR02881 spore_V_K stage V sp 96.2 0.014 3.1E-07 56.8 7.6 24 189-212 41-64 (261)
157 COG3899 Predicted ATPase [Gene 96.2 0.081 1.7E-06 60.2 14.5 46 172-219 5-51 (849)
158 COG0572 Udk Uridine kinase [Nu 96.2 0.0083 1.8E-07 55.9 5.4 80 188-274 6-85 (218)
159 PRK10787 DNA-binding ATP-depen 96.2 0.13 2.8E-06 57.9 15.8 41 172-212 327-371 (784)
160 PRK13695 putative NTPase; Prov 96.2 0.0054 1.2E-07 55.8 4.2 22 192-213 2-23 (174)
161 PRK14974 cell division protein 96.2 0.075 1.6E-06 53.5 12.6 114 189-307 139-259 (336)
162 PRK14954 DNA polymerase III su 96.2 0.07 1.5E-06 58.2 13.2 142 172-314 21-170 (620)
163 cd03230 ABC_DR_subfamily_A Thi 96.1 0.028 6.1E-07 51.0 8.7 120 191-316 27-159 (173)
164 PF13604 AAA_30: AAA domain; P 96.1 0.024 5.2E-07 52.7 8.3 112 177-309 7-128 (196)
165 TIGR02239 recomb_RAD51 DNA rep 96.1 0.026 5.7E-07 56.5 9.1 103 181-284 87-202 (316)
166 PTZ00454 26S protease regulato 96.1 0.015 3.3E-07 60.0 7.6 25 189-213 178-202 (398)
167 PF07693 KAP_NTPase: KAP famil 96.1 0.04 8.7E-07 55.4 10.6 72 173-246 2-81 (325)
168 COG1124 DppF ABC-type dipeptid 96.1 0.043 9.4E-07 51.7 9.7 126 191-318 34-208 (252)
169 PF00560 LRR_1: Leucine Rich R 96.1 0.0021 4.6E-08 36.8 0.7 18 501-518 1-18 (22)
170 PRK08451 DNA polymerase III su 96.1 0.52 1.1E-05 50.5 19.1 130 172-311 19-156 (535)
171 PRK12723 flagellar biosynthesi 96.1 0.096 2.1E-06 53.8 13.1 102 189-297 173-281 (388)
172 PRK14959 DNA polymerase III su 96.1 0.055 1.2E-06 58.6 11.8 133 173-314 22-162 (624)
173 PRK14086 dnaA chromosomal repl 96.1 0.023 4.9E-07 61.3 8.8 98 190-311 314-419 (617)
174 PRK09112 DNA polymerase III su 96.1 0.11 2.3E-06 52.9 13.3 132 172-310 28-179 (351)
175 PRK14953 DNA polymerase III su 96.0 0.083 1.8E-06 56.1 12.8 40 172-212 21-60 (486)
176 CHL00176 ftsH cell division pr 96.0 0.054 1.2E-06 59.4 11.6 89 172-284 191-286 (638)
177 cd00267 ABC_ATPase ABC (ATP-bi 96.0 0.029 6.4E-07 49.9 8.1 115 191-317 26-145 (157)
178 cd00983 recA RecA is a bacter 96.0 0.026 5.6E-07 56.4 8.4 92 186-284 51-144 (325)
179 PRK10247 putative ABC transpor 96.0 0.062 1.3E-06 51.1 10.8 53 265-317 147-203 (225)
180 PRK07764 DNA polymerase III su 96.0 0.069 1.5E-06 60.2 12.6 135 172-314 20-163 (824)
181 cd03278 ABC_SMC_barmotin Barmo 96.0 0.087 1.9E-06 49.0 11.4 20 192-211 24-43 (197)
182 cd03217 ABC_FeS_Assembly ABC-t 96.0 0.042 9.2E-07 51.2 9.4 118 191-316 27-168 (200)
183 TIGR00959 ffh signal recogniti 96.0 0.079 1.7E-06 55.2 12.1 41 172-212 74-121 (428)
184 PRK07471 DNA polymerase III su 96.0 0.1 2.3E-06 53.3 12.9 41 272-312 140-181 (365)
185 cd03269 ABC_putative_ATPase Th 96.0 0.079 1.7E-06 49.7 11.2 52 265-316 138-192 (210)
186 PRK14722 flhF flagellar biosyn 96.0 0.053 1.1E-06 55.3 10.4 86 190-284 137-226 (374)
187 cd03369 ABCC_NFT1 Domain 2 of 96.0 0.12 2.6E-06 48.3 12.3 52 265-316 135-188 (207)
188 COG1121 ZnuC ABC-type Mn/Zn tr 96.0 0.076 1.6E-06 50.9 10.9 124 191-316 31-203 (254)
189 cd03283 ABC_MutS-like MutS-lik 96.0 0.042 9E-07 51.2 9.1 22 191-212 26-47 (199)
190 PRK00771 signal recognition pa 96.0 0.088 1.9E-06 55.0 12.3 109 172-284 71-186 (437)
191 COG1875 NYN ribonuclease and A 96.0 0.016 3.5E-07 57.5 6.4 37 172-210 229-265 (436)
192 COG1126 GlnQ ABC-type polar am 95.9 0.11 2.5E-06 48.1 11.4 126 190-318 28-202 (240)
193 TIGR02012 tigrfam_recA protein 95.9 0.023 5.1E-07 56.6 7.6 92 186-284 51-144 (321)
194 PTZ00301 uridine kinase; Provi 95.9 0.0073 1.6E-07 56.7 3.8 23 190-212 3-25 (210)
195 cd03115 SRP The signal recogni 95.9 0.048 1E-06 49.4 9.1 21 192-212 2-22 (173)
196 TIGR00064 ftsY signal recognit 95.9 0.1 2.2E-06 51.2 11.9 93 188-284 70-165 (272)
197 PRK06067 flagellar accessory p 95.9 0.053 1.1E-06 51.8 9.8 97 182-283 17-130 (234)
198 cd03229 ABC_Class3 This class 95.9 0.042 9E-07 50.2 8.7 122 191-316 27-165 (178)
199 PRK09111 DNA polymerase III su 95.9 0.087 1.9E-06 57.3 12.4 40 172-212 29-68 (598)
200 cd03263 ABC_subfamily_A The AB 95.9 0.096 2.1E-06 49.5 11.3 52 265-316 143-196 (220)
201 PHA02244 ATPase-like protein 95.9 0.068 1.5E-06 54.0 10.5 38 172-213 105-142 (383)
202 PRK13540 cytochrome c biogenes 95.9 0.11 2.4E-06 48.3 11.5 55 264-318 136-193 (200)
203 COG1618 Predicted nucleotide k 95.8 0.0073 1.6E-07 53.1 3.1 31 190-222 5-36 (179)
204 PRK10867 signal recognition pa 95.8 0.054 1.2E-06 56.4 10.0 41 172-212 75-122 (433)
205 COG2884 FtsE Predicted ATPase 95.8 0.12 2.5E-06 47.0 10.7 126 190-318 28-203 (223)
206 PRK13543 cytochrome c biogenes 95.8 0.13 2.8E-06 48.4 11.9 53 264-316 146-201 (214)
207 PRK09354 recA recombinase A; P 95.8 0.04 8.6E-07 55.5 8.5 92 186-284 56-149 (349)
208 cd03235 ABC_Metallic_Cations A 95.8 0.074 1.6E-06 50.0 10.1 23 191-213 26-48 (213)
209 TIGR01241 FtsH_fam ATP-depende 95.8 0.1 2.2E-06 55.9 12.3 24 190-213 88-111 (495)
210 cd02025 PanK Pantothenate kina 95.8 0.034 7.4E-07 52.7 7.7 74 192-271 1-76 (220)
211 PRK11034 clpA ATP-dependent Cl 95.8 0.03 6.4E-07 62.5 8.3 93 190-297 488-582 (758)
212 cd03215 ABC_Carb_Monos_II This 95.7 0.067 1.4E-06 49.0 9.4 50 265-314 114-166 (182)
213 TIGR03864 PQQ_ABC_ATP ABC tran 95.7 0.13 2.8E-06 49.2 11.8 54 265-318 142-199 (236)
214 TIGR00554 panK_bact pantothena 95.7 0.071 1.5E-06 52.5 10.0 80 188-273 60-141 (290)
215 smart00534 MUTSac ATPase domai 95.7 0.078 1.7E-06 48.7 9.7 121 192-319 1-129 (185)
216 PRK05480 uridine/cytidine kina 95.7 0.0088 1.9E-07 56.2 3.5 25 189-213 5-29 (209)
217 PF13238 AAA_18: AAA domain; P 95.7 0.0079 1.7E-07 51.2 2.8 20 193-212 1-20 (129)
218 PTZ00035 Rad51 protein; Provis 95.7 0.073 1.6E-06 53.8 10.1 103 181-284 109-224 (337)
219 cd03259 ABC_Carb_Solutes_like 95.7 0.11 2.4E-06 48.7 10.9 52 264-315 139-194 (213)
220 PLN03186 DNA repair protein RA 95.7 0.074 1.6E-06 53.7 10.1 103 181-284 114-229 (342)
221 PRK08233 hypothetical protein; 95.7 0.0094 2E-07 54.4 3.4 24 190-213 3-26 (182)
222 PRK14965 DNA polymerase III su 95.7 0.12 2.7E-06 56.2 12.4 40 172-212 21-60 (576)
223 cd03266 ABC_NatA_sodium_export 95.6 0.12 2.6E-06 48.8 10.9 23 191-213 32-54 (218)
224 cd03265 ABC_DrrA DrrA is the A 95.6 0.17 3.8E-06 47.7 12.1 23 191-213 27-49 (220)
225 CHL00095 clpC Clp protease ATP 95.6 0.033 7.2E-07 63.3 8.2 39 172-212 184-222 (821)
226 cd03240 ABC_Rad50 The catalyti 95.6 0.045 9.7E-07 51.2 7.8 54 265-318 131-189 (204)
227 PRK11247 ssuB aliphatic sulfon 95.6 0.16 3.4E-06 49.4 11.9 125 191-315 39-197 (257)
228 TIGR01359 UMP_CMP_kin_fam UMP- 95.6 0.089 1.9E-06 48.0 9.7 21 192-212 1-21 (183)
229 PRK05707 DNA polymerase III su 95.6 0.14 3E-06 51.6 11.7 41 272-312 105-146 (328)
230 TIGR02236 recomb_radA DNA repa 95.6 0.069 1.5E-06 53.4 9.6 103 181-284 86-203 (310)
231 PRK05703 flhF flagellar biosyn 95.6 0.13 2.7E-06 53.8 11.8 88 190-284 221-310 (424)
232 PRK11248 tauB taurine transpor 95.6 0.16 3.4E-06 49.4 11.8 52 265-316 138-193 (255)
233 TIGR03740 galliderm_ABC gallid 95.6 0.13 2.8E-06 48.7 11.0 52 265-316 134-188 (223)
234 PRK00889 adenylylsulfate kinas 95.6 0.094 2E-06 47.6 9.7 24 189-212 3-26 (175)
235 COG0593 DnaA ATPase involved i 95.6 0.057 1.2E-06 55.4 8.8 100 189-311 112-217 (408)
236 cd03293 ABC_NrtD_SsuB_transpor 95.6 0.17 3.7E-06 47.8 11.7 23 191-213 31-53 (220)
237 cd03244 ABCC_MRP_domain2 Domai 95.5 0.13 2.9E-06 48.5 10.9 54 265-318 149-204 (221)
238 TIGR00235 udk uridine kinase. 95.5 0.011 2.4E-07 55.4 3.4 25 189-213 5-29 (207)
239 cd03237 ABC_RNaseL_inhibitor_d 95.5 0.1 2.3E-06 50.3 10.2 127 191-317 26-181 (246)
240 cd03213 ABCG_EPDR ABCG transpo 95.5 0.11 2.4E-06 48.1 10.0 117 190-313 35-172 (194)
241 TIGR02324 CP_lyasePhnL phospho 95.5 0.2 4.3E-06 47.5 12.0 52 265-316 159-213 (224)
242 PF14532 Sigma54_activ_2: Sigm 95.5 0.025 5.3E-07 49.3 5.3 85 191-311 22-109 (138)
243 COG1419 FlhF Flagellar GTP-bin 95.5 0.22 4.8E-06 50.7 12.6 104 189-299 202-310 (407)
244 PLN00020 ribulose bisphosphate 95.5 0.026 5.7E-07 56.7 5.9 42 172-213 128-171 (413)
245 cd03267 ABC_NatA_like Similar 95.5 0.21 4.5E-06 47.8 12.1 52 265-316 163-218 (236)
246 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.5 0.13 2.9E-06 48.8 10.6 24 190-213 48-71 (224)
247 cd03264 ABC_drug_resistance_li 95.5 0.047 1E-06 51.2 7.4 21 192-212 27-47 (211)
248 PRK08972 fliI flagellum-specif 95.5 0.046 9.9E-07 56.6 7.7 91 190-284 162-263 (444)
249 PRK14723 flhF flagellar biosyn 95.4 0.12 2.7E-06 57.1 11.5 23 190-212 185-207 (767)
250 cd03282 ABC_MSH4_euk MutS4 hom 95.4 0.032 6.9E-07 52.2 6.1 125 190-322 29-161 (204)
251 TIGR03771 anch_rpt_ABC anchore 95.4 0.18 3.9E-06 47.8 11.4 51 265-315 123-176 (223)
252 TIGR03877 thermo_KaiC_1 KaiC d 95.4 0.1 2.2E-06 50.1 9.7 99 181-284 12-137 (237)
253 COG0468 RecA RecA/RadA recombi 95.4 0.087 1.9E-06 51.4 9.3 97 182-284 52-152 (279)
254 cd03301 ABC_MalK_N The N-termi 95.4 0.13 2.8E-06 48.3 10.3 23 191-213 27-49 (213)
255 TIGR01188 drrA daunorubicin re 95.4 0.19 4.1E-06 50.1 12.1 53 264-316 133-188 (302)
256 TIGR03689 pup_AAA proteasome A 95.4 0.026 5.7E-07 59.8 6.1 25 189-213 215-239 (512)
257 cd03226 ABC_cobalt_CbiO_domain 95.4 0.19 4E-06 47.0 11.3 52 265-316 136-190 (205)
258 PRK12726 flagellar biosynthesi 95.4 0.18 4E-06 51.2 11.7 101 189-295 205-310 (407)
259 TIGR01277 thiQ thiamine ABC tr 95.4 0.15 3.2E-06 48.0 10.6 51 265-315 138-192 (213)
260 PRK09544 znuC high-affinity zi 95.4 0.11 2.5E-06 50.2 10.1 125 191-315 31-184 (251)
261 cd03245 ABCC_bacteriocin_expor 95.4 0.16 3.4E-06 47.9 10.9 24 190-213 30-53 (220)
262 PF00158 Sigma54_activat: Sigm 95.4 0.1 2.3E-06 47.1 9.1 23 191-213 23-45 (168)
263 PRK06305 DNA polymerase III su 95.4 0.15 3.2E-06 53.8 11.5 40 172-212 22-61 (451)
264 cd03231 ABC_CcmA_heme_exporter 95.4 0.16 3.4E-06 47.3 10.5 24 190-213 26-49 (201)
265 PRK12727 flagellar biosynthesi 95.3 0.049 1.1E-06 57.6 7.6 88 190-284 350-439 (559)
266 TIGR03608 L_ocin_972_ABC putat 95.3 0.19 4.1E-06 46.9 11.1 53 264-316 143-198 (206)
267 cd03258 ABC_MetN_methionine_tr 95.3 0.14 3.1E-06 48.8 10.4 52 265-316 150-205 (233)
268 PRK15056 manganese/iron transp 95.3 0.18 3.9E-06 49.4 11.3 51 265-315 152-205 (272)
269 PRK04040 adenylate kinase; Pro 95.3 0.039 8.4E-07 50.9 6.2 23 190-212 2-24 (188)
270 cd03254 ABCC_Glucan_exporter_l 95.3 0.23 4.9E-06 47.2 11.7 54 265-318 149-204 (229)
271 COG4618 ArpD ABC-type protease 95.3 0.091 2E-06 54.6 9.2 54 265-318 482-538 (580)
272 COG2255 RuvB Holliday junction 95.3 0.027 5.7E-07 54.2 5.0 31 187-219 49-79 (332)
273 cd02027 APSK Adenosine 5'-phos 95.3 0.15 3.1E-06 45.1 9.5 21 192-212 1-21 (149)
274 cd03243 ABC_MutS_homologs The 95.3 0.13 2.8E-06 47.9 9.8 122 191-320 30-159 (202)
275 PRK10865 protein disaggregatio 95.3 0.056 1.2E-06 61.6 8.5 39 172-212 183-221 (857)
276 PRK08533 flagellar accessory p 95.3 0.12 2.5E-06 49.4 9.5 49 189-241 23-71 (230)
277 PRK13647 cbiO cobalt transport 95.3 0.14 3E-06 50.3 10.3 53 264-316 147-202 (274)
278 PRK08058 DNA polymerase III su 95.3 0.26 5.7E-06 49.7 12.5 40 272-311 109-149 (329)
279 cd00561 CobA_CobO_BtuR ATP:cor 95.3 0.054 1.2E-06 48.2 6.6 119 191-312 3-138 (159)
280 smart00763 AAA_PrkA PrkA AAA d 95.3 0.023 4.9E-07 57.3 4.7 42 172-213 56-101 (361)
281 PRK12724 flagellar biosynthesi 95.3 0.043 9.3E-07 56.5 6.7 23 190-212 223-245 (432)
282 TIGR02868 CydC thiol reductant 95.2 0.14 3E-06 55.4 11.2 25 189-213 360-384 (529)
283 cd02019 NK Nucleoside/nucleoti 95.2 0.014 3E-07 44.2 2.5 22 192-213 1-22 (69)
284 TIGR02788 VirB11 P-type DNA tr 95.2 0.074 1.6E-06 53.2 8.4 115 190-317 144-258 (308)
285 PRK14721 flhF flagellar biosyn 95.2 0.16 3.5E-06 52.6 11.0 23 190-212 191-213 (420)
286 PRK06547 hypothetical protein; 95.2 0.027 5.9E-07 51.1 4.8 26 188-213 13-38 (172)
287 cd03236 ABC_RNaseL_inhibitor_d 95.2 0.21 4.5E-06 48.5 11.2 24 190-213 26-49 (255)
288 PRK06002 fliI flagellum-specif 95.2 0.083 1.8E-06 55.0 8.8 92 190-284 165-265 (450)
289 cd01135 V_A-ATPase_B V/A-type 95.2 0.064 1.4E-06 52.1 7.5 94 191-284 70-177 (276)
290 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.2 0.17 3.8E-06 48.4 10.7 53 266-318 150-204 (238)
291 PRK08927 fliI flagellum-specif 95.2 0.062 1.3E-06 55.8 7.9 92 189-284 157-259 (442)
292 cd03253 ABCC_ATM1_transporter 95.2 0.24 5.2E-06 47.3 11.6 54 265-318 147-202 (236)
293 PRK11701 phnK phosphonate C-P 95.2 0.17 3.8E-06 49.1 10.6 53 264-316 160-216 (258)
294 cd03232 ABC_PDR_domain2 The pl 95.2 0.11 2.3E-06 48.1 8.7 23 190-212 33-55 (192)
295 PRK06762 hypothetical protein; 95.2 0.017 3.6E-07 52.0 3.2 23 190-212 2-24 (166)
296 PRK13650 cbiO cobalt transport 95.2 0.12 2.5E-06 50.9 9.4 55 264-318 149-207 (279)
297 PRK12597 F0F1 ATP synthase sub 95.2 0.05 1.1E-06 56.9 7.0 92 191-283 144-247 (461)
298 PRK10619 histidine/lysine/argi 95.1 0.23 4.9E-06 48.2 11.4 54 264-317 161-217 (257)
299 PRK06647 DNA polymerase III su 95.1 0.27 5.9E-06 53.2 12.9 131 172-310 21-157 (563)
300 PRK15064 ABC transporter ATP-b 95.1 0.27 5.9E-06 53.1 13.0 51 264-316 164-216 (530)
301 PRK13538 cytochrome c biogenes 95.1 0.21 4.5E-06 46.6 10.6 54 265-318 139-195 (204)
302 PRK05439 pantothenate kinase; 95.1 0.14 3.1E-06 50.9 9.8 82 187-274 83-166 (311)
303 cd03280 ABC_MutS2 MutS2 homolo 95.1 0.034 7.3E-07 51.8 5.2 22 190-211 28-49 (200)
304 KOG0735 AAA+-type ATPase [Post 95.1 0.049 1.1E-06 58.5 6.8 71 190-284 431-505 (952)
305 TIGR02639 ClpA ATP-dependent C 95.1 0.076 1.7E-06 59.6 8.8 39 172-212 187-225 (731)
306 KOG0741 AAA+-type ATPase [Post 95.1 0.14 3E-06 53.4 9.7 118 177-318 524-657 (744)
307 cd03268 ABC_BcrA_bacitracin_re 95.1 0.19 4.2E-06 46.9 10.3 52 265-316 136-190 (208)
308 TIGR03522 GldA_ABC_ATP gliding 95.1 0.33 7.2E-06 48.3 12.5 23 191-213 29-51 (301)
309 KOG0733 Nuclear AAA ATPase (VC 95.1 0.085 1.8E-06 55.8 8.2 89 172-284 195-293 (802)
310 PRK13640 cbiO cobalt transport 95.1 0.15 3.3E-06 50.2 10.0 55 264-318 152-210 (282)
311 PRK08149 ATP synthase SpaL; Va 95.1 0.088 1.9E-06 54.6 8.4 91 190-284 151-252 (428)
312 PF12775 AAA_7: P-loop contain 95.0 0.047 1E-06 53.4 6.2 88 177-284 23-111 (272)
313 cd03252 ABCC_Hemolysin The ABC 95.0 0.27 5.8E-06 47.0 11.4 53 266-318 149-203 (237)
314 PRK13634 cbiO cobalt transport 95.0 0.2 4.4E-06 49.6 10.8 53 264-316 154-210 (290)
315 cd02028 UMPK_like Uridine mono 95.0 0.045 9.7E-07 50.1 5.6 21 192-212 1-21 (179)
316 PRK14948 DNA polymerase III su 95.0 0.33 7.1E-06 53.2 13.2 133 172-310 21-159 (620)
317 cd03285 ABC_MSH2_euk MutS2 hom 95.0 0.03 6.4E-07 53.2 4.6 126 189-322 29-163 (222)
318 TIGR01360 aden_kin_iso1 adenyl 95.0 0.019 4.2E-07 52.6 3.2 24 189-212 2-25 (188)
319 PRK13545 tagH teichoic acids e 95.0 0.24 5.3E-06 52.7 11.6 126 191-316 51-207 (549)
320 cd03250 ABCC_MRP_domain1 Domai 95.0 0.66 1.4E-05 43.2 13.6 55 262-316 134-192 (204)
321 PRK13643 cbiO cobalt transport 95.0 0.33 7.2E-06 48.0 12.1 53 264-316 153-208 (288)
322 PRK13648 cbiO cobalt transport 95.0 0.2 4.3E-06 49.0 10.4 23 191-213 36-58 (269)
323 TIGR03345 VI_ClpV1 type VI sec 95.0 0.069 1.5E-06 60.7 8.0 39 172-212 192-230 (852)
324 PRK07133 DNA polymerase III su 95.0 0.26 5.6E-06 54.4 12.1 40 172-212 23-62 (725)
325 PRK14269 phosphate ABC transpo 95.0 0.36 7.9E-06 46.4 12.1 52 264-315 151-204 (246)
326 cd03287 ABC_MSH3_euk MutS3 hom 94.9 0.18 3.9E-06 47.7 9.6 122 190-318 31-160 (222)
327 COG0396 sufC Cysteine desulfur 94.9 0.38 8.2E-06 45.1 11.3 128 191-318 31-210 (251)
328 TIGR03346 chaperone_ClpB ATP-d 94.9 0.075 1.6E-06 60.7 8.3 39 172-212 178-216 (852)
329 PRK10418 nikD nickel transport 94.9 0.29 6.3E-06 47.4 11.4 23 191-213 30-52 (254)
330 TIGR03411 urea_trans_UrtD urea 94.9 0.28 6E-06 47.1 11.2 53 264-316 152-206 (242)
331 cd03298 ABC_ThiQ_thiamine_tran 94.9 0.084 1.8E-06 49.5 7.4 51 265-315 138-192 (211)
332 KOG1969 DNA replication checkp 94.9 0.058 1.3E-06 58.2 6.7 73 188-284 324-398 (877)
333 TIGR01425 SRP54_euk signal rec 94.9 0.38 8.3E-06 50.0 12.6 41 172-212 75-122 (429)
334 COG1131 CcmA ABC-type multidru 94.9 0.26 5.7E-06 48.8 11.1 126 191-318 32-203 (293)
335 TIGR01420 pilT_fam pilus retra 94.9 0.096 2.1E-06 53.2 8.2 114 190-317 122-235 (343)
336 cd02023 UMPK Uridine monophosp 94.9 0.017 3.6E-07 53.7 2.5 21 192-212 1-21 (198)
337 PRK11153 metN DL-methionine tr 94.9 0.25 5.5E-06 50.2 11.2 54 264-317 149-206 (343)
338 cd03289 ABCC_CFTR2 The CFTR su 94.9 0.18 3.8E-06 49.5 9.8 54 265-318 148-203 (275)
339 COG1120 FepC ABC-type cobalami 94.9 0.2 4.4E-06 48.2 9.8 127 190-318 28-205 (258)
340 PRK03839 putative kinase; Prov 94.9 0.02 4.3E-07 52.3 2.9 22 192-213 2-23 (180)
341 COG0542 clpA ATP-binding subun 94.9 0.067 1.5E-06 59.0 7.3 94 188-298 519-619 (786)
342 PRK09280 F0F1 ATP synthase sub 94.9 0.094 2E-06 54.8 8.1 93 191-284 145-249 (463)
343 PF00154 RecA: recA bacterial 94.9 0.052 1.1E-06 54.0 6.0 89 189-284 52-142 (322)
344 TIGR00150 HI0065_YjeE ATPase, 94.9 0.043 9.3E-07 47.3 4.7 24 190-213 22-45 (133)
345 PTZ00088 adenylate kinase 1; P 94.9 0.051 1.1E-06 51.7 5.7 22 192-213 8-29 (229)
346 cd02021 GntK Gluconate kinase 94.9 0.29 6.4E-06 43.0 10.3 22 192-213 1-22 (150)
347 TIGR02314 ABC_MetN D-methionin 94.8 0.26 5.7E-06 50.0 11.1 54 264-317 149-206 (343)
348 PF00006 ATP-synt_ab: ATP synt 94.8 0.058 1.3E-06 50.8 5.9 90 191-284 16-116 (215)
349 PRK05563 DNA polymerase III su 94.8 0.49 1.1E-05 51.3 13.7 40 172-212 21-60 (559)
350 PRK06936 type III secretion sy 94.8 0.1 2.3E-06 54.1 8.1 91 190-284 162-263 (439)
351 PRK14738 gmk guanylate kinase; 94.8 0.026 5.7E-07 52.9 3.5 32 182-213 5-36 (206)
352 PRK13537 nodulation ABC transp 94.8 0.26 5.7E-06 49.2 10.8 49 265-316 148-202 (306)
353 PTZ00361 26 proteosome regulat 94.8 0.036 7.7E-07 57.9 4.7 47 172-220 188-245 (438)
354 cd01132 F1_ATPase_alpha F1 ATP 94.7 0.1 2.2E-06 50.8 7.4 102 191-296 70-184 (274)
355 PRK15439 autoinducer 2 ABC tra 94.7 0.32 6.8E-06 52.4 12.1 126 191-316 38-204 (510)
356 TIGR03881 KaiC_arch_4 KaiC dom 94.7 0.26 5.7E-06 46.8 10.4 98 182-284 12-132 (229)
357 PRK09099 type III secretion sy 94.7 0.13 2.7E-06 53.7 8.5 92 190-284 163-264 (441)
358 PRK09580 sufC cysteine desulfu 94.7 0.35 7.5E-06 46.6 11.2 23 191-213 28-50 (248)
359 PF00625 Guanylate_kin: Guanyl 94.7 0.04 8.6E-07 50.5 4.4 37 190-228 2-38 (183)
360 TIGR02322 phosphon_PhnN phosph 94.7 0.025 5.5E-07 51.5 3.0 23 191-213 2-24 (179)
361 TIGR03263 guanyl_kin guanylate 94.7 0.026 5.6E-07 51.5 3.0 22 191-212 2-23 (180)
362 TIGR01288 nodI ATP-binding ABC 94.6 0.39 8.4E-06 47.9 11.7 23 191-213 31-53 (303)
363 COG0563 Adk Adenylate kinase a 94.6 0.1 2.3E-06 47.5 6.9 22 192-213 2-23 (178)
364 PRK13409 putative ATPase RIL; 94.6 0.26 5.6E-06 53.9 11.1 126 191-317 366-519 (590)
365 PRK13652 cbiO cobalt transport 94.6 0.33 7.3E-06 47.6 11.0 53 263-315 145-201 (277)
366 PRK13637 cbiO cobalt transport 94.6 0.4 8.7E-06 47.4 11.6 53 263-315 152-208 (287)
367 cd01125 repA Hexameric Replica 94.6 0.21 4.5E-06 47.9 9.3 21 192-212 3-23 (239)
368 PF03205 MobB: Molybdopterin g 94.6 0.029 6.2E-07 49.1 3.0 38 191-230 1-39 (140)
369 PLN02318 phosphoribulokinase/u 94.6 0.043 9.3E-07 58.6 4.8 33 180-212 55-87 (656)
370 cd03251 ABCC_MsbA MsbA is an e 94.6 0.33 7.2E-06 46.2 10.7 54 265-318 148-203 (234)
371 COG1428 Deoxynucleoside kinase 94.6 0.027 5.8E-07 52.0 2.9 24 190-213 4-27 (216)
372 PRK14264 phosphate ABC transpo 94.6 0.5 1.1E-05 47.1 12.3 24 190-213 71-94 (305)
373 PRK11034 clpA ATP-dependent Cl 94.6 0.12 2.5E-06 57.9 8.4 39 172-212 191-229 (758)
374 cd03227 ABC_Class2 ABC-type Cl 94.5 0.15 3.3E-06 45.7 7.7 46 273-318 99-147 (162)
375 PRK00409 recombination and DNA 94.5 0.045 9.8E-07 61.6 5.1 123 189-318 326-456 (782)
376 PRK14249 phosphate ABC transpo 94.5 0.42 9E-06 46.2 11.3 23 191-213 31-53 (251)
377 TIGR01069 mutS2 MutS2 family p 94.5 0.033 7.2E-07 62.5 4.0 123 189-318 321-451 (771)
378 PRK11144 modC molybdate transp 94.5 0.5 1.1E-05 48.2 12.3 124 191-316 25-193 (352)
379 TIGR01040 V-ATPase_V1_B V-type 94.5 0.12 2.5E-06 53.8 7.6 95 190-284 141-258 (466)
380 PRK07594 type III secretion sy 94.5 0.12 2.6E-06 53.7 7.7 91 190-284 155-256 (433)
381 cd03233 ABC_PDR_domain1 The pl 94.5 0.41 8.9E-06 44.6 10.8 23 191-213 34-56 (202)
382 KOG3347 Predicted nucleotide k 94.5 0.07 1.5E-06 46.3 5.0 37 190-233 7-43 (176)
383 cd02024 NRK1 Nicotinamide ribo 94.5 0.024 5.3E-07 52.1 2.4 22 192-213 1-22 (187)
384 KOG0734 AAA+-type ATPase conta 94.5 0.19 4.1E-06 52.5 8.9 45 172-216 312-363 (752)
385 PRK11147 ABC transporter ATPas 94.5 0.48 1E-05 52.4 13.0 53 263-317 164-218 (635)
386 TIGR03574 selen_PSTK L-seryl-t 94.5 0.12 2.5E-06 50.0 7.3 21 192-212 1-21 (249)
387 cd03300 ABC_PotA_N PotA is an 94.5 0.42 9E-06 45.6 11.1 52 264-315 139-194 (232)
388 PRK13531 regulatory ATPase Rav 94.5 0.095 2.1E-06 54.9 6.9 38 172-213 25-62 (498)
389 PRK13639 cbiO cobalt transport 94.5 0.31 6.8E-06 47.8 10.4 53 264-316 146-201 (275)
390 PRK00131 aroK shikimate kinase 94.4 0.032 6.9E-07 50.4 3.1 23 190-212 4-26 (175)
391 PRK00279 adk adenylate kinase; 94.4 0.24 5.2E-06 46.7 9.2 21 192-212 2-22 (215)
392 PRK11819 putative ABC transpor 94.4 0.53 1.1E-05 51.2 13.0 23 191-213 34-56 (556)
393 TIGR03498 FliI_clade3 flagella 94.4 0.16 3.5E-06 52.6 8.5 91 190-284 140-241 (418)
394 PRK10463 hydrogenase nickel in 94.4 0.27 5.9E-06 48.2 9.6 91 188-284 102-195 (290)
395 PRK11174 cysteine/glutathione 94.4 0.38 8.2E-06 52.8 12.0 24 190-213 376-399 (588)
396 PRK09519 recA DNA recombinatio 94.4 0.15 3.2E-06 56.8 8.6 97 181-284 50-149 (790)
397 PF08433 KTI12: Chromatin asso 94.4 0.064 1.4E-06 52.4 5.3 22 191-212 2-23 (270)
398 TIGR03878 thermo_KaiC_2 KaiC d 94.4 0.076 1.6E-06 51.7 5.8 41 188-230 34-74 (259)
399 CHL00195 ycf46 Ycf46; Provisio 94.4 0.2 4.4E-06 53.2 9.3 25 189-213 258-282 (489)
400 TIGR02142 modC_ABC molybdenum 94.4 0.42 9.1E-06 48.8 11.4 23 191-213 24-46 (354)
401 COG1102 Cmk Cytidylate kinase 94.4 0.05 1.1E-06 47.9 4.0 44 192-248 2-45 (179)
402 cd01122 GP4d_helicase GP4d_hel 94.4 0.48 1E-05 46.2 11.6 52 190-244 30-81 (271)
403 PRK00625 shikimate kinase; Pro 94.4 0.03 6.6E-07 50.8 2.8 21 192-212 2-22 (173)
404 PRK11000 maltose/maltodextrin 94.4 0.36 7.9E-06 49.5 11.0 23 191-213 30-52 (369)
405 PRK11160 cysteine/glutathione 94.3 0.4 8.7E-06 52.4 11.9 24 190-213 366-389 (574)
406 PRK15429 formate hydrogenlyase 94.3 0.2 4.2E-06 56.0 9.6 23 191-213 400-422 (686)
407 cd03284 ABC_MutS1 MutS1 homolo 94.3 0.3 6.5E-06 46.1 9.5 126 191-323 31-164 (216)
408 PRK10751 molybdopterin-guanine 94.3 0.041 8.8E-07 49.8 3.4 24 189-212 5-28 (173)
409 KOG0989 Replication factor C, 94.3 0.26 5.7E-06 48.0 9.0 122 172-310 41-168 (346)
410 cd01130 VirB11-like_ATPase Typ 94.3 0.13 2.9E-06 47.2 7.0 125 174-315 12-138 (186)
411 PTZ00185 ATPase alpha subunit; 94.3 0.17 3.7E-06 53.2 8.3 94 191-284 190-300 (574)
412 cd00071 GMPK Guanosine monopho 94.3 0.037 8E-07 48.2 3.0 22 192-213 1-22 (137)
413 PRK06995 flhF flagellar biosyn 94.3 0.14 3.1E-06 53.9 7.8 23 190-212 256-278 (484)
414 cd03248 ABCC_TAP TAP, the Tran 94.2 0.49 1.1E-05 44.8 10.9 52 265-316 160-213 (226)
415 TIGR03305 alt_F1F0_F1_bet alte 94.2 0.12 2.7E-06 53.7 7.2 93 191-284 139-243 (449)
416 PRK13947 shikimate kinase; Pro 94.2 0.034 7.3E-07 50.2 2.8 21 192-212 3-23 (171)
417 PF07724 AAA_2: AAA domain (Cd 94.2 0.055 1.2E-06 49.0 4.1 40 190-231 3-43 (171)
418 PHA02774 E1; Provisional 94.2 0.25 5.3E-06 52.8 9.4 38 174-212 419-456 (613)
419 TIGR01041 ATP_syn_B_arch ATP s 94.2 0.12 2.7E-06 54.0 7.2 94 191-284 142-249 (458)
420 KOG0744 AAA+-type ATPase [Post 94.2 0.13 2.9E-06 50.4 6.8 81 190-284 177-261 (423)
421 PRK13657 cyclic beta-1,2-gluca 94.2 0.34 7.3E-06 53.1 11.1 23 190-212 361-383 (588)
422 PRK10938 putative molybdenum t 94.2 0.42 9E-06 51.2 11.5 23 191-213 30-52 (490)
423 PRK06217 hypothetical protein; 94.2 0.034 7.4E-07 51.0 2.7 24 191-214 2-25 (183)
424 PF07726 AAA_3: ATPase family 94.2 0.052 1.1E-06 46.2 3.5 27 193-221 2-28 (131)
425 PRK05688 fliI flagellum-specif 94.2 0.17 3.7E-06 52.8 8.0 91 190-284 168-269 (451)
426 PRK13651 cobalt transporter AT 94.1 0.52 1.1E-05 47.0 11.3 22 191-212 34-55 (305)
427 PF01583 APS_kinase: Adenylyls 94.1 0.051 1.1E-06 48.2 3.6 34 191-226 3-36 (156)
428 cd02020 CMPK Cytidine monophos 94.1 0.034 7.3E-07 48.6 2.5 21 192-212 1-21 (147)
429 PRK00300 gmk guanylate kinase; 94.1 0.038 8.2E-07 51.6 3.0 24 190-213 5-28 (205)
430 cd01136 ATPase_flagellum-secre 94.1 0.25 5.5E-06 49.4 8.9 91 190-284 69-170 (326)
431 COG2607 Predicted ATPase (AAA+ 94.1 0.22 4.7E-06 46.9 7.7 79 190-299 85-167 (287)
432 PF03308 ArgK: ArgK protein; 94.1 0.076 1.7E-06 50.8 4.9 64 175-238 14-77 (266)
433 COG0467 RAD55 RecA-superfamily 94.1 0.061 1.3E-06 52.3 4.4 45 186-232 19-63 (260)
434 COG0194 Gmk Guanylate kinase [ 94.1 0.056 1.2E-06 48.9 3.7 24 191-214 5-28 (191)
435 PRK03846 adenylylsulfate kinas 94.1 0.047 1E-06 50.8 3.4 25 188-212 22-46 (198)
436 PRK15453 phosphoribulokinase; 94.1 0.26 5.6E-06 48.1 8.5 82 189-273 4-90 (290)
437 cd00227 CPT Chloramphenicol (C 94.0 0.04 8.7E-07 50.1 2.9 23 191-213 3-25 (175)
438 PRK04328 hypothetical protein; 94.0 0.23 5E-06 48.0 8.3 122 182-310 15-171 (249)
439 PF02463 SMC_N: RecF/RecN/SMC 94.0 0.26 5.7E-06 46.4 8.6 46 273-318 158-205 (220)
440 PRK06793 fliI flagellum-specif 94.0 0.52 1.1E-05 49.0 11.2 126 190-320 156-294 (432)
441 TIGR01192 chvA glucan exporter 94.0 0.39 8.5E-06 52.6 11.0 54 265-318 481-536 (585)
442 PRK12678 transcription termina 94.0 0.098 2.1E-06 55.6 5.9 104 178-284 405-514 (672)
443 TIGR00455 apsK adenylylsulfate 94.0 0.32 7E-06 44.5 8.9 24 189-212 17-40 (184)
444 PRK15455 PrkA family serine pr 94.0 0.066 1.4E-06 57.0 4.6 41 172-212 81-125 (644)
445 PRK11432 fbpC ferric transport 94.0 0.68 1.5E-05 47.1 11.9 54 264-317 145-202 (351)
446 PF08477 Miro: Miro-like prote 93.9 0.05 1.1E-06 45.6 3.1 23 193-215 2-24 (119)
447 PF13481 AAA_25: AAA domain; P 93.9 0.16 3.6E-06 46.6 6.8 42 191-232 33-82 (193)
448 PRK10078 ribose 1,5-bisphospho 93.9 0.046 1E-06 50.2 3.1 23 191-213 3-25 (186)
449 cd01672 TMPK Thymidine monopho 93.9 0.095 2.1E-06 48.3 5.2 22 192-213 2-23 (200)
450 PRK11608 pspF phage shock prot 93.9 0.19 4.2E-06 50.6 7.7 23 191-213 30-52 (326)
451 cd01129 PulE-GspE PulE/GspE Th 93.9 0.17 3.6E-06 49.4 7.0 123 173-316 66-188 (264)
452 PF00910 RNA_helicase: RNA hel 93.9 0.034 7.4E-07 46.1 1.9 20 193-212 1-20 (107)
453 TIGR00176 mobB molybdopterin-g 93.9 0.05 1.1E-06 48.5 3.1 33 192-226 1-34 (155)
454 PRK07721 fliI flagellum-specif 93.9 0.2 4.3E-06 52.4 8.0 93 189-284 157-259 (438)
455 TIGR03375 type_I_sec_LssB type 93.9 0.24 5.2E-06 55.5 9.2 23 190-212 491-513 (694)
456 PRK13642 cbiO cobalt transport 93.8 0.33 7.1E-06 47.7 9.2 54 265-318 150-207 (277)
457 PRK05922 type III secretion sy 93.8 0.25 5.4E-06 51.4 8.4 90 191-284 158-258 (434)
458 PRK13536 nodulation factor exp 93.8 0.56 1.2E-05 47.6 11.0 23 191-213 68-90 (340)
459 COG1936 Predicted nucleotide k 93.8 0.045 9.8E-07 48.8 2.6 20 192-211 2-21 (180)
460 PRK13975 thymidylate kinase; P 93.8 0.05 1.1E-06 50.3 3.1 23 191-213 3-25 (196)
461 cd01121 Sms Sms (bacterial rad 93.8 0.18 3.9E-06 51.6 7.4 100 177-284 69-169 (372)
462 TIGR02857 CydD thiol reductant 93.8 0.72 1.6E-05 49.9 12.5 24 190-213 348-371 (529)
463 PRK10070 glycine betaine trans 93.8 0.74 1.6E-05 47.7 11.9 54 264-317 173-230 (400)
464 PRK13949 shikimate kinase; Pro 93.8 0.048 1E-06 49.3 2.9 22 192-213 3-24 (169)
465 TIGR01243 CDC48 AAA family ATP 93.8 0.46 9.9E-06 53.5 11.2 24 190-213 487-510 (733)
466 PF06745 KaiC: KaiC; InterPro 93.8 0.098 2.1E-06 49.7 5.1 91 189-283 18-125 (226)
467 PRK14246 phosphate ABC transpo 93.7 0.64 1.4E-05 45.1 10.9 52 265-316 163-216 (257)
468 PRK14257 phosphate ABC transpo 93.7 0.74 1.6E-05 46.4 11.6 23 191-213 109-131 (329)
469 PRK13409 putative ATPase RIL; 93.7 0.41 8.9E-06 52.3 10.4 23 191-213 100-122 (590)
470 cd03288 ABCC_SUR2 The SUR doma 93.7 0.91 2E-05 44.0 11.8 55 264-318 165-221 (257)
471 PRK08769 DNA polymerase III su 93.7 0.36 7.8E-06 48.3 9.1 132 173-312 10-153 (319)
472 TIGR00954 3a01203 Peroxysomal 93.7 0.62 1.3E-05 51.8 11.9 52 265-318 592-645 (659)
473 COG3640 CooC CO dehydrogenase 93.6 0.1 2.2E-06 49.0 4.7 42 192-235 2-44 (255)
474 TIGR03497 FliI_clade2 flagella 93.6 0.22 4.7E-06 51.7 7.7 92 189-284 136-238 (413)
475 TIGR01193 bacteriocin_ABC ABC- 93.6 0.72 1.6E-05 51.8 12.4 24 190-213 500-523 (708)
476 cd00820 PEPCK_HprK Phosphoenol 93.6 0.064 1.4E-06 44.3 3.0 21 191-211 16-36 (107)
477 COG2274 SunT ABC-type bacterio 93.6 0.39 8.6E-06 53.3 10.0 22 191-212 500-521 (709)
478 TIGR03265 PhnT2 putative 2-ami 93.6 0.95 2.1E-05 46.1 12.2 127 191-317 31-200 (353)
479 TIGR01313 therm_gnt_kin carboh 93.6 0.045 9.7E-07 49.0 2.3 21 193-213 1-21 (163)
480 KOG0927 Predicted transporter 93.5 2.5 5.4E-05 44.6 14.9 134 178-313 404-567 (614)
481 TIGR03496 FliI_clade1 flagella 93.5 0.22 4.8E-06 51.6 7.6 91 190-284 137-238 (411)
482 cd02029 PRK_like Phosphoribulo 93.5 0.22 4.7E-06 48.2 6.9 81 192-274 1-85 (277)
483 PRK14530 adenylate kinase; Pro 93.5 0.055 1.2E-06 51.0 2.9 22 191-212 4-25 (215)
484 cd01428 ADK Adenylate kinase ( 93.5 0.42 9E-06 43.9 8.8 21 193-213 2-22 (194)
485 COG1643 HrpA HrpA-like helicas 93.5 0.49 1.1E-05 53.2 10.7 150 172-328 51-224 (845)
486 PRK10982 galactose/methyl gala 93.5 0.77 1.7E-05 49.1 12.0 23 191-213 25-47 (491)
487 cd00464 SK Shikimate kinase (S 93.5 0.055 1.2E-06 47.8 2.7 20 193-212 2-21 (154)
488 PRK10416 signal recognition pa 93.5 0.29 6.3E-06 49.0 8.1 24 189-212 113-136 (318)
489 TIGR02203 MsbA_lipidA lipid A 93.5 0.63 1.4E-05 50.8 11.5 53 266-318 480-534 (571)
490 TIGR00958 3a01208 Conjugate Tr 93.5 0.94 2E-05 50.9 13.0 24 190-213 507-530 (711)
491 PRK10636 putative ABC transpor 93.5 0.94 2E-05 50.2 12.8 52 263-316 157-210 (638)
492 PRK05057 aroK shikimate kinase 93.4 0.068 1.5E-06 48.5 3.3 24 190-213 4-27 (172)
493 PRK07196 fliI flagellum-specif 93.4 0.25 5.4E-06 51.4 7.7 91 190-284 155-256 (434)
494 TIGR01842 type_I_sec_PrtD type 93.4 0.87 1.9E-05 49.4 12.4 24 190-213 344-367 (544)
495 TIGR02782 TrbB_P P-type conjug 93.4 0.48 1E-05 47.1 9.5 91 191-294 133-224 (299)
496 PRK11819 putative ABC transpor 93.4 1.1 2.3E-05 48.9 13.0 123 191-317 351-507 (556)
497 COG0003 ArsA Predicted ATPase 93.4 0.1 2.2E-06 52.2 4.6 48 190-239 2-49 (322)
498 COG4133 CcmA ABC-type transpor 93.4 1 2.3E-05 40.9 10.5 54 260-313 135-191 (209)
499 PRK06761 hypothetical protein; 93.4 0.13 2.8E-06 50.4 5.3 23 191-213 4-26 (282)
500 cd03299 ABC_ModC_like Archeal 93.4 0.83 1.8E-05 43.6 10.9 24 190-213 25-48 (235)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=6.2e-66 Score=567.49 Aligned_cols=472 Identities=22% Similarity=0.274 Sum_probs=363.3
Q ss_pred chHHHHHHHHHHHHHHhhccccCch----hhHHHHHHHHHHHHHhhcccchhhccchhhcCChhHHHHHHHHHHHhhhhH
Q 010117 23 NLTPLFQDLLTESEIITTGNYEGDL----SLHLIQLFREHFDKARISLPFWQLLDSEENVNRPDILEILEDINYFVQESE 98 (518)
Q Consensus 23 ~l~~~l~~ll~~~~~~~~g~~~~~~----~l~~i~~~~~~~e~l~~~l~~l~~~d~e~~~~~~~v~~Wl~~lr~~ayd~e 98 (518)
-.++++.+++.++.....|+.+.+. .+..++.+.++++..+ .....+..|...+++++|++|
T Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~--------------~~~~~~~~~~e~~~~~~~~~e 72 (889)
T KOG4658|consen 7 FGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKR--------------DDLERRVNWEEDVGDLVYLAE 72 (889)
T ss_pred EehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhc--------------chHHHHHHHHHHHHHHHHHHH
Confidence 4566788888888888888777542 2233444444444332 255678899999999999999
Q ss_pred HHHHHHHHHHhcccCCCCcc------chh----chHHHHHHHHHHHHHhhccCCCCCCCCccC----Ccc-cccccccCC
Q 010117 99 EAIDAFFINIMQQQNSESTT------CKA----HLVELHSKIIDIRNRMEQLPPSDNDFDISE----RRD-KLIHLLIEG 163 (518)
Q Consensus 99 D~lD~~~~~~~~~~~~~~~~------~~~----~r~~~~~~i~~l~~~l~~i~~~~~~~~~~~----~~~-~~~~~~~~~ 163 (518)
|.++.|.......+...... .++ ++++.+..+..+.+++..+.+....++... ... ..+...+++
T Consensus 73 ~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~ 152 (889)
T KOG4658|consen 73 DIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVET 152 (889)
T ss_pred HHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhccc
Confidence 99999988766543321111 011 444555555555555544444444443222 000 112222344
Q ss_pred CCCCChh-h-hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCC-cccccceEEEEEcCCCCCHHHHHHH
Q 010117 164 QPRVDES-E-FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNH-VKFYFDCHAWVRVSIAYDFGKILDD 240 (518)
Q Consensus 164 ~~~~~~~-~-r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~-~~~~F~~~~wv~vs~~~~~~~i~~~ 240 (518)
.+...+. . .+..++++++.|.+++. .+++|+||||+||||||++++|+.. ++.+|+.++||+||+.|+...++++
T Consensus 153 ~~~~~~~~VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~ 230 (889)
T KOG4658|consen 153 RPIQSESDVGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQT 230 (889)
T ss_pred CCCCccccccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHH
Confidence 4444443 3 99999999999998764 8999999999999999999999987 9999999999999999999999999
Q ss_pred HHhhcCCCCCCCccccCCHHHHHHHHHHHhccCcEEEEEcCCCCChHHHHHHhhhcCCCCCCcEEEEEecchhhhhh-c-
Q 010117 241 IINPVMPPSRVSVIIGEDYQLKKSILQDYLTAKKYFIVLDDVFDDSEIWHDLVEFLPDNQNGSRVLITLLWFELQKG-E- 318 (518)
Q Consensus 241 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~va~~-~- 318 (518)
|+..++..... ....+.++++..|.+.|++|||||||||||+ ..+|+.++.++|...+||||++|||++.||.. |
T Consensus 231 Il~~l~~~~~~--~~~~~~~~~~~~i~~~L~~krfllvLDDIW~-~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~ 307 (889)
T KOG4658|consen 231 ILERLGLLDEE--WEDKEEDELASKLLNLLEGKRFLLVLDDIWE-EVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMG 307 (889)
T ss_pred HHHHhccCCcc--cchhhHHHHHHHHHHHhccCceEEEEecccc-cccHHhcCCCCCCccCCeEEEEEeccHhhhhcccc
Confidence 99998875431 1333457899999999999999999999999 88999999999999889999999999999998 4
Q ss_pred ---------------------------------------------cCCCc-hhhhcccccCCChH-HHHHHHHHhCCCCC
Q 010117 319 ---------------------------------------------KIQPD-SVLVGGPMIRIKHE-AWQFFILHYGNTPL 351 (518)
Q Consensus 319 ---------------------------------------------~~~Pl-i~~vg~~L~~~~~~-~W~~~~~~l~~~~~ 351 (518)
+|+|+ +.++|++|+.|... +|+.+.+.+.+ .+
T Consensus 308 ~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s-~~ 386 (889)
T KOG4658|consen 308 VDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKS-SL 386 (889)
T ss_pred CCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccc-cc
Confidence 78899 99999999999999 99999999977 42
Q ss_pred cC-C-CCCCchHHhhhhhcccCCccHhHHHHHhhhhcCCCCcccchhhHHHHhhhCCCCCC---CCChHHHHHHHHHHHH
Q 010117 352 EN-Y-IGQKAIPTILSQIHSVWELPFHLKVCCIYLCVFPPSIEISTRQLCQLWIAEGLIPG---NYNSERMVEEYLKELS 426 (518)
Q Consensus 352 ~~-~-~~~~~i~~~l~~~~sy~~Lp~~lk~cfly~s~FP~~~~i~~~~Li~~Wiaeg~i~~---~~~~e~~~~~~~~~Lv 426 (518)
.. . ...+.+.++|. +||+.||+++|.||+|||+||+||.|+++.||.+||||||+.+ +.++++.|+.|+.+|+
T Consensus 387 ~~~~~~~~~~i~~iLk--lSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV 464 (889)
T KOG4658|consen 387 AADFSGMEESILPILK--LSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELV 464 (889)
T ss_pred cCCCCchhhhhHHhhh--ccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHH
Confidence 22 2 23568999999 9999999999999999999999999999999999999999988 7789999999999999
Q ss_pred HcCceeeeeecCCCceeEEEeCHHHHHHHHHHhh-----hcCeEEEcCCCce-e------------eEecCCccccc---
Q 010117 427 NSGFIQVGKIRAGGTIKACYVPSYVYAALRWVAE-----KMGFVRLYSNLEE-I------------SLGTAKRSKSE--- 485 (518)
Q Consensus 427 ~rsll~~~~~~~~g~~~~~~mHdlv~d~a~~~s~-----~e~~~~~~~~~~~-~------------si~~~~~~~~~--- 485 (518)
++||++..... ++..+|+|||+|||+|.++|+ +|+++.....+.. . |++++......
T Consensus 465 ~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~ 542 (889)
T KOG4658|consen 465 RASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSS 542 (889)
T ss_pred HHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCC
Confidence 99999987643 667899999999999999999 7776665431110 0 44444332111
Q ss_pred -----c---cccc---c---CCCccCCCcceeEEEecCC-CCCcCCCC
Q 010117 486 -----H---LALT---D---CENFWKKFKHLRVLNMGFA-VLDNIHPD 518 (518)
Q Consensus 486 -----~---f~~~---~---~~~~~~~~~~LrVLdL~~~-~i~~LP~s 518 (518)
+ |... . +..||..|++||||||++| ++.+||++
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~ 590 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS 590 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH
Confidence 1 1111 1 4567999999999999976 48899975
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.4e-40 Score=329.98 Aligned_cols=234 Identities=27% Similarity=0.398 Sum_probs=193.3
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRV 251 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~ 251 (518)
||.++++|.+.|.....+.++|+|+||||+||||||..++++..++.+|+.++|+.+++..+...++..|+.+++.....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999999667899999999999999999999999766999999999999999999999999999999988541
Q ss_pred CccccCCHHHHHHHHHHHhccCcEEEEEcCCCCChHHHHHHhhhcCCCCCCcEEEEEecchhhhhhc-------------
Q 010117 252 SVIIGEDYQLKKSILQDYLTAKKYFIVLDDVFDDSEIWHDLVEFLPDNQNGSRVLITLLWFELQKGE------------- 318 (518)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~va~~~------------- 318 (518)
. ....+.++....+++.|.++++||||||||+ ...|+.+...++....||+||||||+..++..+
T Consensus 81 ~-~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~-~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 81 I-SDPKDIEELQDQLRELLKDKRCLLVLDDVWD-EEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLS 158 (287)
T ss_dssp S-SCCSSHHHHHHHHHHHHCCTSEEEEEEEE-S-HHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--
T ss_pred c-ccccccccccccchhhhccccceeeeeeecc-cccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1 1456788899999999999999999999999 999999999888877899999999999887644
Q ss_pred ----------------------------------cCCCc-hhhhcccccCCChH-HHHHHHHHhCCCCCcC-CCCCCchH
Q 010117 319 ----------------------------------KIQPD-SVLVGGPMIRIKHE-AWQFFILHYGNTPLEN-YIGQKAIP 361 (518)
Q Consensus 319 ----------------------------------~~~Pl-i~~vg~~L~~~~~~-~W~~~~~~l~~~~~~~-~~~~~~i~ 361 (518)
+|+|+ ++.+|++|+.+... +|..+++.+.+ .... ......+.
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~-~~~~~~~~~~~~~ 237 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELEN-SLRESRDYDRSVF 237 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHH-CHTCSSGSCHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc
Confidence 78888 89999999766544 99999988876 3322 22356899
Q ss_pred HhhhhhcccCCccHhHHHHHhhhhcCCCCcccchhhHHHHhhhCCCCCC
Q 010117 362 TILSQIHSVWELPFHLKVCCIYLCVFPPSIEISTRQLCQLWIAEGLIPG 410 (518)
Q Consensus 362 ~~l~~~~sy~~Lp~~lk~cfly~s~FP~~~~i~~~~Li~~Wiaeg~i~~ 410 (518)
.++. +||+.||+++|+||+|||+||+++.|+++.|+++|+|||||.+
T Consensus 238 ~~l~--~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 238 SALE--LSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHH--HHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccce--echhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 9999 9999999999999999999999999999999999999999975
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.8e-32 Score=315.38 Aligned_cols=256 Identities=17% Similarity=0.168 Sum_probs=201.6
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEc---CCC-----------CC-HHH
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRV---SIA-----------YD-FGK 236 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~v---s~~-----------~~-~~~ 236 (518)
|+..++++..+|.-+...+++|+|+||||+||||||+.+|+ ++..+|+..+|+.- +.. ++ ...
T Consensus 189 ~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~ 266 (1153)
T PLN03210 189 IEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLH 266 (1153)
T ss_pred hHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccchhHH
Confidence 89999999998876666799999999999999999999999 78889998887642 111 11 123
Q ss_pred HHHHHHhhcCCCCCCCccccCCHHHHHHHHHHHhccCcEEEEEcCCCCChHHHHHHhhhcCCCCCCcEEEEEecchhhhh
Q 010117 237 ILDDIINPVMPPSRVSVIIGEDYQLKKSILQDYLTAKKYFIVLDDVFDDSEIWHDLVEFLPDNQNGSRVLITLLWFELQK 316 (518)
Q Consensus 237 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~va~ 316 (518)
++++++..+...... .... ...+++.|.+||+||||||||+ ...|+.+.......++||+||||||++.++.
T Consensus 267 l~~~~l~~il~~~~~---~~~~----~~~~~~~L~~krvLLVLDdv~~-~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~ 338 (1153)
T PLN03210 267 LQRAFLSEILDKKDI---KIYH----LGAMEERLKHRKVLIFIDDLDD-QDVLDALAGQTQWFGSGSRIIVITKDKHFLR 338 (1153)
T ss_pred HHHHHHHHHhCCCCc---ccCC----HHHHHHHHhCCeEEEEEeCCCC-HHHHHHHHhhCccCCCCcEEEEEeCcHHHHH
Confidence 445555544332210 1111 1457788999999999999999 9999999887766678999999999998875
Q ss_pred hc---------------------------------------------cCCCc-hhhhcccccCCChHHHHHHHHHhCCCC
Q 010117 317 GE---------------------------------------------KIQPD-SVLVGGPMIRIKHEAWQFFILHYGNTP 350 (518)
Q Consensus 317 ~~---------------------------------------------~~~Pl-i~~vg~~L~~~~~~~W~~~~~~l~~~~ 350 (518)
.+ +|+|+ ++++|+.|+.+...+|+.+++++.. .
T Consensus 339 ~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~-~ 417 (1153)
T PLN03210 339 AHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRN-G 417 (1153)
T ss_pred hcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHh-C
Confidence 43 78999 9999999999866699999999876 3
Q ss_pred CcCCCCCCchHHhhhhhcccCCccHh-HHHHHhhhhcCCCCcccchhhHHHHhhhCCCCCCCCChHHHHHHHHHHHHHcC
Q 010117 351 LENYIGQKAIPTILSQIHSVWELPFH-LKVCCIYLCVFPPSIEISTRQLCQLWIAEGLIPGNYNSERMVEEYLKELSNSG 429 (518)
Q Consensus 351 ~~~~~~~~~i~~~l~~~~sy~~Lp~~-lk~cfly~s~FP~~~~i~~~~Li~~Wiaeg~i~~~~~~e~~~~~~~~~Lv~rs 429 (518)
. ...|.++|+ +||++||++ .|.||++||.||.+..++ .+..|++++.... +.-++.|+++|
T Consensus 418 ~-----~~~I~~~L~--~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~--------~~~l~~L~~ks 479 (1153)
T PLN03210 418 L-----DGKIEKTLR--VSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV--------NIGLKNLVDKS 479 (1153)
T ss_pred c-----cHHHHHHHH--HhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc--------hhChHHHHhcC
Confidence 2 247999999 999999874 999999999999987664 4777888875432 22388999999
Q ss_pred ceeeeeecCCCceeEEEeCHHHHHHHHHHhhhcC
Q 010117 430 FIQVGKIRAGGTIKACYVPSYVYAALRWVAEKMG 463 (518)
Q Consensus 430 ll~~~~~~~~g~~~~~~mHdlv~d~a~~~s~~e~ 463 (518)
|++... .+++|||++|++|+.++.++.
T Consensus 480 Li~~~~-------~~~~MHdLl~~~~r~i~~~~~ 506 (1153)
T PLN03210 480 LIHVRE-------DIVEMHSLLQEMGKEIVRAQS 506 (1153)
T ss_pred CEEEcC-------CeEEhhhHHHHHHHHHHHhhc
Confidence 998643 259999999999999987663
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.07 E-value=8.1e-09 Score=118.71 Aligned_cols=259 Identities=12% Similarity=0.122 Sum_probs=142.5
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCC-CCHHHHHHHHHhhcCCCCCCC--
Q 010117 176 REELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIA-YDFGKILDDIINPVMPPSRVS-- 252 (518)
Q Consensus 176 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~~~~~~-- 252 (518)
+.+|.+.|... ...+++.|.|++|.||||++....+. ++.++|+++... .++..+...++..+.......
T Consensus 19 R~rl~~~l~~~-~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~ 91 (903)
T PRK04841 19 RERLLAKLSGA-NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQQATNGHCS 91 (903)
T ss_pred chHHHHHHhcc-cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccc
Confidence 34555555543 35789999999999999999988752 236899999644 466677777777764221100
Q ss_pred -------ccccCCHHHHHHHHHHHhc--cCcEEEEEcCCCC-C-hHHHHHHhhhcCCCCCCcEEEEEecchh-h--hhhc
Q 010117 253 -------VIIGEDYQLKKSILQDYLT--AKKYFIVLDDVFD-D-SEIWHDLVEFLPDNQNGSRVLITLLWFE-L--QKGE 318 (518)
Q Consensus 253 -------~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdvw~-~-~~~~~~l~~~l~~~~~gskIivTTR~~~-v--a~~~ 318 (518)
.....+...+...+-..+. +.+++|||||+.. + ....+.+...++....+.++|||||... . +..-
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~ 171 (903)
T PRK04841 92 KSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLR 171 (903)
T ss_pred hhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHH
Confidence 0011233334444444443 5789999999976 3 3223344443444445678889999841 1 1100
Q ss_pred ----------cCCCc----h-hhhcccccCCChH-----------HHHHHHH----HhCCCC--CcC----CC--CCCch
Q 010117 319 ----------KIQPD----S-VLVGGPMIRIKHE-----------AWQFFIL----HYGNTP--LEN----YI--GQKAI 360 (518)
Q Consensus 319 ----------~~~Pl----i-~~vg~~L~~~~~~-----------~W~~~~~----~l~~~~--~~~----~~--~~~~i 360 (518)
..+|+ + ..+...+...... -|-..+. .+.... ... .. ....+
T Consensus 172 ~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (903)
T PRK04841 172 VRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIEAAESSRLCDDVEGWATALQLIALSARQNNSSLHDSARRLAGINASHL 251 (903)
T ss_pred hcCcceecCHHhCCCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhhhHhhcCCCchhH
Confidence 11122 1 1111111100000 1221111 111000 000 00 11235
Q ss_pred HHhhhhhcc-cCCccHhHHHHHhhhhcCCCCcccchhhHHHHhhhCCCCCCCCChHHHHHHHHHHHHHcCceeeeeecCC
Q 010117 361 PTILSQIHS-VWELPFHLKVCCIYLCVFPPSIEISTRQLCQLWIAEGLIPGNYNSERMVEEYLKELSNSGFIQVGKIRAG 439 (518)
Q Consensus 361 ~~~l~~~~s-y~~Lp~~lk~cfly~s~FP~~~~i~~~~Li~~Wiaeg~i~~~~~~e~~~~~~~~~Lv~rsll~~~~~~~~ 439 (518)
...+. -. ++.||++.+..+...|+++ .|+.+.+-.+. | .+.+...+++|.++++|..... .+
T Consensus 252 ~~~l~--~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~l~---~--------~~~~~~~L~~l~~~~l~~~~~~-~~ 314 (903)
T PRK04841 252 SDYLV--EEVLDNVDLETRHFLLRCSVLR---SMNDALIVRVT---G--------EENGQMRLEELERQGLFIQRMD-DS 314 (903)
T ss_pred HHHHH--HHHHhcCCHHHHHHHHHhcccc---cCCHHHHHHHc---C--------CCcHHHHHHHHHHCCCeeEeec-CC
Confidence 55444 33 7899999999999999997 34433222211 1 1235788999999999754221 11
Q ss_pred CceeEEEeCHHHHHHHHHHhh
Q 010117 440 GTIKACYVPSYVYAALRWVAE 460 (518)
Q Consensus 440 g~~~~~~mHdlv~d~a~~~s~ 460 (518)
+ ..|+.|++++++++....
T Consensus 315 ~--~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 315 G--EWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred C--CEEehhHHHHHHHHHHHH
Confidence 2 358889999999998764
No 5
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.64 E-value=7.2e-07 Score=87.44 Aligned_cols=97 Identities=15% Similarity=0.182 Sum_probs=64.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHH--
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQ-- 267 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~-- 267 (518)
..++.|+|++|+|||||++.+++..... .+ ...|+ +....+..+++..|...++.+.. ..+...+...+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~-----~~~~~~~~~~l~~~ 114 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETE-----GRDKAALLRELEDF 114 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCC-----CCCHHHHHHHHHHH
Confidence 4689999999999999999999853321 11 12333 33446788899999988876542 122223333333
Q ss_pred --HHh-ccCcEEEEEcCCCC-ChHHHHHHhh
Q 010117 268 --DYL-TAKKYFIVLDDVFD-DSEIWHDLVE 294 (518)
Q Consensus 268 --~~L-~~kr~LlVLDdvw~-~~~~~~~l~~ 294 (518)
... .+++++||+||++. ....++.++.
T Consensus 115 l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~ 145 (269)
T TIGR03015 115 LIEQFAAGKRALLVVDEAQNLTPELLEELRM 145 (269)
T ss_pred HHHHHhCCCCeEEEEECcccCCHHHHHHHHH
Confidence 322 67889999999998 4556776654
No 6
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.63 E-value=1.7e-07 Score=81.15 Aligned_cols=114 Identities=14% Similarity=0.144 Sum_probs=81.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccc-----cceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFY-----FDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKS 264 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~-----F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~ 264 (518)
-+.+.|+|.+|+|||++++.+.++ .... -..++|+.++...+...+...|+..++.... ...+...+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~l~~ 77 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK----SRQTSDELRS 77 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS----STS-HHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc----ccCCHHHHHH
Confidence 478999999999999999999884 2221 3446799999888999999999999998865 3457778888
Q ss_pred HHHHHhccCcE-EEEEcCCCCC--hHHHHHHhhhcCCCCCCcEEEEEecc
Q 010117 265 ILQDYLTAKKY-FIVLDDVFDD--SEIWHDLVEFLPDNQNGSRVLITLLW 311 (518)
Q Consensus 265 ~l~~~L~~kr~-LlVLDdvw~~--~~~~~~l~~~l~~~~~gskIivTTR~ 311 (518)
.+.+.+...+. +||+|++..- ...++.++.... ..+.++|+.-+.
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 88888877554 9999998651 344455544433 556777777654
No 7
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.59 E-value=1.1e-07 Score=91.37 Aligned_cols=94 Identities=10% Similarity=-0.053 Sum_probs=63.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCC--CCHHHHHHHHHhhcCCCCCCCcc-c-cCCHHHHHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIA--YDFGKILDDIINPVMPPSRVSVI-I-GEDYQLKKSI 265 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~--~~~~~i~~~i~~~l~~~~~~~~~-~-~~~~~~~~~~ 265 (518)
-..++|+|++|+|||||++.+|++.... +|+.++|++++++ +++.++++.+...+-.......+ . ..-.......
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 3689999999999999999999975444 8999999998877 89999999994333222210000 0 0011122222
Q ss_pred HHHH-hccCcEEEEEcCCCC
Q 010117 266 LQDY-LTAKKYFIVLDDVFD 284 (518)
Q Consensus 266 l~~~-L~~kr~LlVLDdvw~ 284 (518)
.... -.|++.+|++|++-.
T Consensus 95 a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 95 AKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHCCCCEEEEEECHHH
Confidence 2222 247999999999865
No 8
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.57 E-value=4.5e-06 Score=90.04 Aligned_cols=262 Identities=18% Similarity=0.145 Sum_probs=154.3
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCC-CCHHHHHHHHHhhcCCCCCC---
Q 010117 176 REELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIA-YDFGKILDDIINPVMPPSRV--- 251 (518)
Q Consensus 176 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~~~~~--- 251 (518)
+.++++.|..+ ...+.+.|..++|.|||||+.+... ... .=..+.|.+.+.. .++..+...++..++.-.+.
T Consensus 24 R~rL~~~L~~~-~~~RL~li~APAGfGKttl~aq~~~--~~~-~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~ 99 (894)
T COG2909 24 RPRLLDRLRRA-NDYRLILISAPAGFGKTTLLAQWRE--LAA-DGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGD 99 (894)
T ss_pred cHHHHHHHhcC-CCceEEEEeCCCCCcHHHHHHHHHH--hcC-cccceeEeecCCccCCHHHHHHHHHHHHHHhCccccH
Confidence 45677777665 3589999999999999999998864 111 1234899999765 56788888888887743321
Q ss_pred ------CccccCCHHHHHHHHHHHhcc--CcEEEEEcCCCC--ChHHHHHHhhhcCCCCCCcEEEEEecch---hhhhhc
Q 010117 252 ------SVIIGEDYQLKKSILQDYLTA--KKYFIVLDDVFD--DSEIWHDLVEFLPDNQNGSRVLITLLWF---ELQKGE 318 (518)
Q Consensus 252 ------~~~~~~~~~~~~~~l~~~L~~--kr~LlVLDdvw~--~~~~~~~l~~~l~~~~~gskIivTTR~~---~va~~~ 318 (518)
......+...+...+..-+.. ++.++||||--- ++..-..+...+.....+-..+||||+. .+|+.-
T Consensus 100 ~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lR 179 (894)
T COG2909 100 EAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLR 179 (894)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCccccee
Confidence 011334455566666665543 689999999654 2433344444444445577899999986 122111
Q ss_pred ---------------------------cCCCc-hhhhcccccCCChHHHHHHHHHhCCCCCc-CC------CCCCchHHh
Q 010117 319 ---------------------------KIQPD-SVLVGGPMIRIKHEAWQFFILHYGNTPLE-NY------IGQKAIPTI 363 (518)
Q Consensus 319 ---------------------------~~~Pl-i~~vg~~L~~~~~~~W~~~~~~l~~~~~~-~~------~~~~~i~~~ 363 (518)
++.|+ -..+..+. .... -|-..++-..- ... ++ +...+....
T Consensus 180 lr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~~~~~L~-~~te-GW~~al~L~aL-a~~~~~~~~q~~~~LsG~~~~ 256 (894)
T COG2909 180 LRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAADLKALY-DRTE-GWAAALQLIAL-ALRNNTSAEQSLRGLSGAASH 256 (894)
T ss_pred ehhhHHhcChHhhcCChHHHHHHHHHcCCCCCChHHHHHHH-hhcc-cHHHHHHHHHH-HccCCCcHHHHhhhccchHHH
Confidence 45665 11111111 1110 34333221110 001 00 111111111
Q ss_pred hhhh---cccCCccHhHHHHHhhhhcCCCCcccchhhHHHHhhhCCCCCCCCChHHHHHHHHHHHHHcCceeeeeecCCC
Q 010117 364 LSQI---HSVWELPFHLKVCCIYLCVFPPSIEISTRQLCQLWIAEGLIPGNYNSERMVEEYLKELSNSGFIQVGKIRAGG 440 (518)
Q Consensus 364 l~~~---~sy~~Lp~~lk~cfly~s~FP~~~~i~~~~Li~~Wiaeg~i~~~~~~e~~~~~~~~~Lv~rsll~~~~~~~~g 440 (518)
+..- --++.||+++|.-++-||+++.-. ..|+..- +-++.|...+++|-+++||-..-.+ +
T Consensus 257 l~dYL~eeVld~Lp~~l~~FLl~~svl~~f~----~eL~~~L----------tg~~ng~amLe~L~~~gLFl~~Ldd-~- 320 (894)
T COG2909 257 LSDYLVEEVLDRLPPELRDFLLQTSVLSRFN----DELCNAL----------TGEENGQAMLEELERRGLFLQRLDD-E- 320 (894)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhHHHhh----HHHHHHH----------hcCCcHHHHHHHHHhCCCceeeecC-C-
Confidence 1100 224689999999999999987522 2333322 2245678899999999998643212 2
Q ss_pred ceeEEEeCHHHHHHHHHHhhh
Q 010117 441 TIKACYVPSYVYAALRWVAEK 461 (518)
Q Consensus 441 ~~~~~~mHdlv~d~a~~~s~~ 461 (518)
...|+.|.++.||.+...+.
T Consensus 321 -~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 321 -GQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred -CceeehhHHHHHHHHhhhcc
Confidence 24799999999999987765
No 9
>PF05729 NACHT: NACHT domain
Probab=98.55 E-value=2.4e-07 Score=83.41 Aligned_cols=114 Identities=17% Similarity=0.178 Sum_probs=67.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcccc----cceEEEEEcCCCCCHH---HHHHHHHhhcCCCCCCCccccCCHHHHH
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKFY----FDCHAWVRVSIAYDFG---KILDDIINPVMPPSRVSVIIGEDYQLKK 263 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~~----F~~~~wv~vs~~~~~~---~i~~~i~~~l~~~~~~~~~~~~~~~~~~ 263 (518)
+++.|+|.+|+||||+++.++.+-..... +...+|++.....+.. .+...|..+...... ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-------~~~~-- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA-------PIEE-- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh-------hhHH--
Confidence 57899999999999999998875322222 4567777776554432 343444333332211 1111
Q ss_pred HHHHHHh-ccCcEEEEEcCCCCC---hH-----HHHH-HhhhcCC-CCCCcEEEEEecchhh
Q 010117 264 SILQDYL-TAKKYFIVLDDVFDD---SE-----IWHD-LVEFLPD-NQNGSRVLITLLWFEL 314 (518)
Q Consensus 264 ~~l~~~L-~~kr~LlVLDdvw~~---~~-----~~~~-l~~~l~~-~~~gskIivTTR~~~v 314 (518)
.+...+ ..++++||+|++.+- .. .+.. +...++. ..++++++||||....
T Consensus 72 -~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~ 132 (166)
T PF05729_consen 72 -LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAF 132 (166)
T ss_pred -HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChH
Confidence 222222 568999999999771 11 1222 2233332 3568999999997655
No 10
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.53 E-value=1.2e-06 Score=90.89 Aligned_cols=111 Identities=18% Similarity=0.130 Sum_probs=79.6
Q ss_pred hhhhHHHHHHHHhcC--CCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCC
Q 010117 172 FERGREELFDLLIEG--PPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPS 249 (518)
Q Consensus 172 r~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~ 249 (518)
|+++.++|...|... ......+.|+|++|+|||++++.++++.......-..++++.....+...++..|+.++....
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~ 114 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHP 114 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCC
Confidence 999999998888543 233456789999999999999999984322221223566666666788899999999987632
Q ss_pred CCCccccCCHHHHHHHHHHHhc--cCcEEEEEcCCCC
Q 010117 250 RVSVIIGEDYQLKKSILQDYLT--AKKYFIVLDDVFD 284 (518)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdvw~ 284 (518)
.. ....+..++...+.+.+. ++..+||||+++.
T Consensus 115 ~~--~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~ 149 (394)
T PRK00411 115 PP--SSGLSFDELFDKIAEYLDERDRVLIVALDDINY 149 (394)
T ss_pred CC--CCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhH
Confidence 10 123356677777777775 3568999999986
No 11
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.44 E-value=3.8e-07 Score=91.58 Aligned_cols=101 Identities=12% Similarity=0.038 Sum_probs=67.4
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCC--CHHHHHHHHHhhcCCCCCCCccc
Q 010117 178 ELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAY--DFGKILDDIINPVMPPSRVSVII 255 (518)
Q Consensus 178 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~--~~~~i~~~i~~~l~~~~~~~~~~ 255 (518)
++++++..= ..=+...|+|++|+||||||+.+|++.... +|+.++||.+++.+ ++.+++++|...+-.... +
T Consensus 158 rvID~l~PI-GkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~----d 231 (416)
T PRK09376 158 RIIDLIAPI-GKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTF----D 231 (416)
T ss_pred eeeeeeccc-ccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECC----C
Confidence 455555432 123578999999999999999999964444 89999999999998 888888888743222221 1
Q ss_pred cCCHHH------HHHHHHHH-hccCcEEEEEcCCCC
Q 010117 256 GEDYQL------KKSILQDY-LTAKKYFIVLDDVFD 284 (518)
Q Consensus 256 ~~~~~~------~~~~l~~~-L~~kr~LlVLDdvw~ 284 (518)
...... ....-..+ -.|++.||++|++-.
T Consensus 232 ~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 232 EPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 111111 11111111 267999999999865
No 12
>PF13173 AAA_14: AAA domain
Probab=98.40 E-value=5.1e-07 Score=78.00 Aligned_cols=101 Identities=15% Similarity=0.179 Sum_probs=67.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDY 269 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 269 (518)
-+++.|.|+.|+|||||+++++.+.. .....++++..+....... +.+ +.+.+.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~--------------------~~~-~~~~~~~~ 57 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA--------------------DPD-LLEYFLEL 57 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh--------------------hhh-hHHHHHHh
Confidence 36899999999999999999987422 2234566655444221100 000 23334444
Q ss_pred hccCcEEEEEcCCCCChHHHHHHhhhcCCCCCCcEEEEEecchhhh
Q 010117 270 LTAKKYFIVLDDVFDDSEIWHDLVEFLPDNQNGSRVLITLLWFELQ 315 (518)
Q Consensus 270 L~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~va 315 (518)
...+..+|+||++.. ...|......+.+..+..+|++|+.+....
T Consensus 58 ~~~~~~~i~iDEiq~-~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l 102 (128)
T PF13173_consen 58 IKPGKKYIFIDEIQY-LPDWEDALKFLVDNGPNIKIILTGSSSSLL 102 (128)
T ss_pred hccCCcEEEEehhhh-hccHHHHHHHHHHhccCceEEEEccchHHH
Confidence 444778899999999 777877777777655678999999876554
No 13
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.39 E-value=4.9e-06 Score=85.39 Aligned_cols=108 Identities=20% Similarity=0.120 Sum_probs=77.1
Q ss_pred hhhhHHHHHHHHhcC--CCCceEEEEEcCCCccHHHHHHHHHcCCCccccc------ceEEEEEcCCCCCHHHHHHHHHh
Q 010117 172 FERGREELFDLLIEG--PPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYF------DCHAWVRVSIAYDFGKILDDIIN 243 (518)
Q Consensus 172 r~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F------~~~~wv~vs~~~~~~~i~~~i~~ 243 (518)
|+++.++|...|... ......+.|+|++|+|||++++.+++. ..... -..+|+......+...++..|+.
T Consensus 20 Re~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~--l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 97 (365)
T TIGR02928 20 RDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKE--LEEAAEDRDVRVVTVYVNCQILDTLYQVLVELAN 97 (365)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhccCCceEEEEEECCCCCCHHHHHHHHHH
Confidence 999999999988652 233457899999999999999999984 22111 13567777777778889999999
Q ss_pred hcC---CCCCCCccccCCHHHHHHHHHHHhc--cCcEEEEEcCCCC
Q 010117 244 PVM---PPSRVSVIIGEDYQLKKSILQDYLT--AKKYFIVLDDVFD 284 (518)
Q Consensus 244 ~l~---~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdvw~ 284 (518)
++. .... ....+..++...+.+.+. +++++||||+++.
T Consensus 98 ~l~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~ 140 (365)
T TIGR02928 98 QLRGSGEEVP---TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDY 140 (365)
T ss_pred HHhhcCCCCC---CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhh
Confidence 884 2211 122344556666666663 5678999999987
No 14
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.34 E-value=6.3e-06 Score=71.95 Aligned_cols=122 Identities=15% Similarity=0.006 Sum_probs=67.9
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRV 251 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~ 251 (518)
++.....+...+... ..+.+.|+|.+|+||||+++.+++. ....-..++++..++..........+...
T Consensus 3 ~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------- 71 (151)
T cd00009 3 QEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDLLEGLVVAELFGHF------- 71 (151)
T ss_pred hHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEehhhhhhhhHHHHHhhhh-------
Confidence 455666777666543 3468899999999999999999984 32222345666655443322211111000
Q ss_pred CccccCCHHHHHHHHHHHhccCcEEEEEcCCCC-C---hHHHHHHhhhcCCC---CCCcEEEEEecchh
Q 010117 252 SVIIGEDYQLKKSILQDYLTAKKYFIVLDDVFD-D---SEIWHDLVEFLPDN---QNGSRVLITLLWFE 313 (518)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~-~---~~~~~~l~~~l~~~---~~gskIivTTR~~~ 313 (518)
............+..+||+||++. . ...+..+...+... ..+..||+||....
T Consensus 72 ---------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ---------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ---------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 001111222345678999999985 1 12222222222221 35788888887643
No 15
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.20 E-value=5.6e-06 Score=83.67 Aligned_cols=94 Identities=9% Similarity=-0.047 Sum_probs=63.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCC--CCHHHHHHHHHhhcCCCCCCCcccc-CC-HHHHHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIA--YDFGKILDDIINPVMPPSRVSVIIG-ED-YQLKKSI 265 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~--~~~~~i~~~i~~~l~~~~~~~~~~~-~~-~~~~~~~ 265 (518)
-..++|+|++|+|||||++.+++..... +|+..+||.+++. .++.++++.|...+-....+..+.. .. .+...+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 3679999999999999999999954333 7999999999976 7999999999654433332110000 00 1111222
Q ss_pred HHHH-hccCcEEEEEcCCCC
Q 010117 266 LQDY-LTAKKYFIVLDDVFD 284 (518)
Q Consensus 266 l~~~-L~~kr~LlVLDdvw~ 284 (518)
.... -.|++.+|++|++-.
T Consensus 247 Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHcCCCeEEEEEChhH
Confidence 2222 257999999999865
No 16
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.03 E-value=1.1e-05 Score=74.16 Aligned_cols=42 Identities=21% Similarity=0.139 Sum_probs=29.5
Q ss_pred hhhhHHHHHHHHhc-CCCCceEEEEEcCCCccHHHHHHHHHcC
Q 010117 172 FERGREELFDLLIE-GPPRLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 172 r~~~~~~l~~~L~~-~~~~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
|+++.+++...|.. .....+.+.|+|.+|+|||+|.+.++..
T Consensus 5 R~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 5 REEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp -HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 89999999999942 2445799999999999999999999883
No 17
>PRK06893 DNA replication initiation factor; Validated
Probab=97.88 E-value=1.8e-05 Score=75.56 Aligned_cols=38 Identities=8% Similarity=0.019 Sum_probs=28.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVS 229 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs 229 (518)
.+.+.|+|+.|+|||+|++.+.+. .......+.+++++
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~ 76 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLS 76 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHH
Confidence 357899999999999999999983 33333445676653
No 18
>PTZ00202 tuzin; Provisional
Probab=97.85 E-value=0.00026 Score=72.00 Aligned_cols=149 Identities=13% Similarity=0.108 Sum_probs=85.8
Q ss_pred ccCCCCCCChhhhhhhHHHHHHHHhcCC-CCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHH
Q 010117 160 LIEGQPRVDESEFERGREELFDLLIEGP-PRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKIL 238 (518)
Q Consensus 160 ~~~~~~~~~~~~r~~~~~~l~~~L~~~~-~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~ 238 (518)
|..+..++. |+.+...+...|...+ ...+++.|+|++|+|||||++.+... .. + ....+... +..+++
T Consensus 258 Pa~~~~FVG---ReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~--l~--~-~qL~vNpr---g~eElL 326 (550)
T PTZ00202 258 PAVIRQFVS---REAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRK--EG--M-PAVFVDVR---GTEDTL 326 (550)
T ss_pred CCCccCCCC---cHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhc--CC--c-eEEEECCC---CHHHHH
Confidence 333444444 9999999999886542 23469999999999999999999973 22 1 12222222 679999
Q ss_pred HHHHhhcCCCCCCCccccCCHHHHHHHHHHHh-c-cCcEEEEEcCCCCC--hHHHHHHhhhcCCCCCCcEEEEEecchhh
Q 010117 239 DDIINPVMPPSRVSVIIGEDYQLKKSILQDYL-T-AKKYFIVLDDVFDD--SEIWHDLVEFLPDNQNGSRVLITLLWFEL 314 (518)
Q Consensus 239 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L-~-~kr~LlVLDdvw~~--~~~~~~l~~~l~~~~~gskIivTTR~~~v 314 (518)
+.|+.+|+.+... ....-...+++.+.+.- . |++.+||+-=-.-+ ...+++.. +|.+...-|.|++.--.+.+
T Consensus 327 r~LL~ALGV~p~~--~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evplesl 403 (550)
T PTZ00202 327 RSVVKALGVPNVE--ACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESL 403 (550)
T ss_pred HHHHHHcCCCCcc--cHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhc
Confidence 9999999974321 01112233344443332 2 56677776422110 22232222 33444556777776555544
Q ss_pred hhhccCCC
Q 010117 315 QKGEKIQP 322 (518)
Q Consensus 315 a~~~~~~P 322 (518)
.-..-.+|
T Consensus 404 t~~~~~lp 411 (550)
T PTZ00202 404 TIANTLLP 411 (550)
T ss_pred chhcccCc
Confidence 43333333
No 19
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.84 E-value=0.00033 Score=69.94 Aligned_cols=129 Identities=16% Similarity=0.037 Sum_probs=66.2
Q ss_pred hhhhHHHHHHHHhcC---CCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCC
Q 010117 172 FERGREELFDLLIEG---PPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPP 248 (518)
Q Consensus 172 r~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 248 (518)
++..++.|..++... ......+.++|++|+|||+||+.+.+. ....|. .+..+....... +...+..++..
T Consensus 9 ~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~~---~~~~~~~~~~~~-l~~~l~~~~~~ 82 (305)
T TIGR00635 9 QEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANE--MGVNLK---ITSGPALEKPGD-LAAILTNLEEG 82 (305)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCEE---EeccchhcCchh-HHHHHHhcccC
Confidence 667777777777532 234566889999999999999999983 333221 122111111222 22223333221
Q ss_pred CCC--CccccCCHHHHHHHHHHHhccCcEEEEEcCCCCChHHHHHHhhhcCCCCCCcEEEEEecchhh
Q 010117 249 SRV--SVIIGEDYQLKKSILQDYLTAKKYFIVLDDVFDDSEIWHDLVEFLPDNQNGSRVLITLLWFEL 314 (518)
Q Consensus 249 ~~~--~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~v 314 (518)
.-- ...+..+ ......+...+.+.+..+|+++..+ ...|. ..+| +.+-|..||+...+
T Consensus 83 ~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~-~~~~~---~~~~---~~~li~~t~~~~~l 142 (305)
T TIGR00635 83 DVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPS-ARSVR---LDLP---PFTLVGATTRAGML 142 (305)
T ss_pred CEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCcc-cccee---ecCC---CeEEEEecCCcccc
Confidence 100 0001111 1234456666677777777777665 33332 1222 24556667776433
No 20
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.82 E-value=0.00066 Score=68.59 Aligned_cols=42 Identities=21% Similarity=0.182 Sum_probs=32.9
Q ss_pred hhhhHHHHHHHHhc---CCCCceEEEEEcCCCccHHHHHHHHHcC
Q 010117 172 FERGREELFDLLIE---GPPRLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 172 r~~~~~~l~~~L~~---~~~~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
+++.++.+..++.. .......+.|+|++|+||||||+.+.+.
T Consensus 30 ~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~ 74 (328)
T PRK00080 30 QEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANE 74 (328)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHH
Confidence 77777777666653 2334667889999999999999999984
No 21
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00017 Score=73.47 Aligned_cols=107 Identities=19% Similarity=0.135 Sum_probs=81.8
Q ss_pred hhhhHHHHHHHHhcC--CCCceEEEEEcCCCccHHHHHHHHHcCCCcccccce--EEEEEcCCCCCHHHHHHHHHhhcCC
Q 010117 172 FERGREELFDLLIEG--PPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDC--HAWVRVSIAYDFGKILDDIINPVMP 247 (518)
Q Consensus 172 r~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~--~~wv~vs~~~~~~~i~~~i~~~l~~ 247 (518)
|+++.+++...|... .....-+.|+|..|+|||+.++.+.. ++++.... .+.|+.-...+..+++..|+++++.
T Consensus 22 Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~ 99 (366)
T COG1474 22 REEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKILNKLGK 99 (366)
T ss_pred cHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCC
Confidence 999999988887653 22223389999999999999999998 55554322 6788888888999999999999974
Q ss_pred CCCCCccccCCHHHHHHHHHHHhc--cCcEEEEEcCCCC
Q 010117 248 PSRVSVIIGEDYQLKKSILQDYLT--AKKYFIVLDDVFD 284 (518)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdvw~ 284 (518)
... ......+..+.+.+.+. ++.+++|||++..
T Consensus 100 ~p~----~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~ 134 (366)
T COG1474 100 VPL----TGDSSLEILKRLYDNLSKKGKTVIVILDEVDA 134 (366)
T ss_pred CCC----CCCchHHHHHHHHHHHHhcCCeEEEEEcchhh
Confidence 332 34555667777777775 4789999999976
No 22
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.79 E-value=8.2e-05 Score=70.73 Aligned_cols=56 Identities=18% Similarity=0.123 Sum_probs=39.2
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIA 231 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~ 231 (518)
|+.+.++|.+++..+ ..+.+.|+|+.|+|||+|.+.+.+ ..++.-...+|+...+.
T Consensus 4 R~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~--~~~~~~~~~~y~~~~~~ 59 (234)
T PF01637_consen 4 REKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFIN--ELKEKGYKVVYIDFLEE 59 (234)
T ss_dssp -HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHH--HCT--EECCCHHCCTTB
T ss_pred HHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHH--HhhhcCCcEEEEecccc
Confidence 889999999988765 357899999999999999999998 44332223445444444
No 23
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.70 E-value=0.00019 Score=73.97 Aligned_cols=116 Identities=11% Similarity=0.082 Sum_probs=74.5
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRV 251 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~ 251 (518)
.++..+.++..|..+ +.|.++|++|+|||++|+.+++.......|+.+.||++++.++..+++..+.-. +...
T Consensus 180 ~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~vgy-- 252 (459)
T PRK11331 180 PETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GVGF-- 252 (459)
T ss_pred CHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-CCCe--
Confidence 577788888888754 468889999999999999999854444578889999999999877766433110 0000
Q ss_pred CccccCCHHHHHHHHHHHhc--cCcEEEEEcCCCC-Ch-HHHHHHhhhcCC
Q 010117 252 SVIIGEDYQLKKSILQDYLT--AKKYFIVLDDVFD-DS-EIWHDLVEFLPD 298 (518)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdvw~-~~-~~~~~l~~~l~~ 298 (518)
.....-..+.+..... +++++||+|++.. +. ..+..+...+..
T Consensus 253 ----~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~ 299 (459)
T PRK11331 253 ----RRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEH 299 (459)
T ss_pred ----EecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccc
Confidence 0000111222223222 4689999999987 32 335555554443
No 24
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.69 E-value=0.00024 Score=61.26 Aligned_cols=86 Identities=9% Similarity=-0.026 Sum_probs=48.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHHh
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDYL 270 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L 270 (518)
..+.|+|++|+||||+++.+.+. ........+.+..+........... ........ ...........+.+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLL--LIIVGGKK----ASGSGELRLRLALALA 74 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHH--hhhhhccC----CCCCHHHHHHHHHHHH
Confidence 57899999999999999999984 3333233455554444322222111 00111111 2222333334444444
Q ss_pred ccC-cEEEEEcCCCC
Q 010117 271 TAK-KYFIVLDDVFD 284 (518)
Q Consensus 271 ~~k-r~LlVLDdvw~ 284 (518)
... ..+|++|++..
T Consensus 75 ~~~~~~viiiDei~~ 89 (148)
T smart00382 75 RKLKPDVLILDEITS 89 (148)
T ss_pred HhcCCCEEEEECCcc
Confidence 444 48999999988
No 25
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.69 E-value=0.00049 Score=68.23 Aligned_cols=108 Identities=19% Similarity=0.256 Sum_probs=76.5
Q ss_pred hhhhHHHHHHHHhcCCCC-ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCC
Q 010117 172 FERGREELFDLLIEGPPR-LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSR 250 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~-~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~ 250 (518)
|+.....+..++.+.+.. .+.|-|.|-.|.|||.+.+++++.. .. ..+|+++-..|+..-++..|+.+.+....
T Consensus 11 Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~---~~vw~n~~ecft~~~lle~IL~~~~~~d~ 85 (438)
T KOG2543|consen 11 RESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL--NL---ENVWLNCVECFTYAILLEKILNKSQLADK 85 (438)
T ss_pred hHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc--CC---cceeeehHHhccHHHHHHHHHHHhccCCC
Confidence 899999999988877543 4455899999999999999999954 22 25899999999999999999999963222
Q ss_pred CCccccC---CHHHHHHHHHHH--hc--cCcEEEEEcCCCC
Q 010117 251 VSVIIGE---DYQLKKSILQDY--LT--AKKYFIVLDDVFD 284 (518)
Q Consensus 251 ~~~~~~~---~~~~~~~~l~~~--L~--~kr~LlVLDdvw~ 284 (518)
++..... +..+....+.++ .. ++.++||||++..
T Consensus 86 dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~ 126 (438)
T KOG2543|consen 86 DGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADA 126 (438)
T ss_pred chhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHh
Confidence 1111111 222223333331 11 4589999999976
No 26
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.66 E-value=0.0007 Score=67.94 Aligned_cols=119 Identities=12% Similarity=0.178 Sum_probs=72.7
Q ss_pred hhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcC----CCcccccceEEEEEc-CCCCCHHHHHHHHHhhcCC
Q 010117 173 ERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNN----NHVKFYFDCHAWVRV-SIAYDFGKILDDIINPVMP 247 (518)
Q Consensus 173 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d----~~~~~~F~~~~wv~v-s~~~~~~~i~~~i~~~l~~ 247 (518)
+..++.+.+.+..+. -.....++|+.|+||||+|+.+++. .....|+|...|... +....+.+ ++++.+.+..
T Consensus 10 ~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~~~~~~ 87 (313)
T PRK05564 10 ENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNIIEEVNK 87 (313)
T ss_pred HHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHHHHHhc
Confidence 445566777776542 3457789999999999999988872 122345665555442 22233333 2223332221
Q ss_pred CCCCCccccCCHHHHHHHHHHHhccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEEecchh
Q 010117 248 PSRVSVIIGEDYQLKKSILQDYLTAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLITLLWFE 313 (518)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~~ 313 (518)
.. ..+++-++|+|++.. ....++.+...+.....++.+|++|.+.+
T Consensus 88 ~p--------------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~ 134 (313)
T PRK05564 88 KP--------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLE 134 (313)
T ss_pred Cc--------------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 11 123444555565543 38899999999987777899998886653
No 27
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.66 E-value=9.7e-05 Score=70.29 Aligned_cols=53 Identities=9% Similarity=-0.022 Sum_probs=35.0
Q ss_pred hhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcC
Q 010117 173 ERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVS 229 (518)
Q Consensus 173 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs 229 (518)
+...+.+.+++.. .....|.|+|..|+|||+||+.+++. ........++++++
T Consensus 23 ~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~ 75 (226)
T TIGR03420 23 AELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLA 75 (226)
T ss_pred HHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHH
Confidence 4455566665543 23568899999999999999999983 32233344555443
No 28
>PRK08116 hypothetical protein; Validated
Probab=97.62 E-value=0.00031 Score=68.63 Aligned_cols=102 Identities=19% Similarity=0.189 Sum_probs=58.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHHh
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDYL 270 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L 270 (518)
.-+.++|..|+|||.||..+++ .+..+-..+++++ ..+++..|........ ..+..+ +.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~--~l~~~~~~v~~~~------~~~ll~~i~~~~~~~~------~~~~~~----~~~~l 176 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIAN--ELIEKGVPVIFVN------FPQLLNRIKSTYKSSG------KEDENE----IIRSL 176 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEE------HHHHHHHHHHHHhccc------cccHHH----HHHHh
Confidence 3588999999999999999999 4433333456664 4455666654443221 112222 23334
Q ss_pred ccCcEEEEEcCCCC-ChHHHHH--HhhhcCC-CCCCcEEEEEecc
Q 010117 271 TAKKYFIVLDDVFD-DSEIWHD--LVEFLPD-NQNGSRVLITLLW 311 (518)
Q Consensus 271 ~~kr~LlVLDdvw~-~~~~~~~--l~~~l~~-~~~gskIivTTR~ 311 (518)
.+-. ||||||+.. ....|.. +...+.. -..|..+||||..
T Consensus 177 ~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 177 VNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred cCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 4333 899999953 1333432 2222221 1245679999874
No 29
>PRK08118 topology modulation protein; Reviewed
Probab=97.62 E-value=3.3e-05 Score=69.89 Aligned_cols=35 Identities=14% Similarity=0.271 Sum_probs=28.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcc-cccceEEE
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVK-FYFDCHAW 225 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~-~~F~~~~w 225 (518)
+.|.|+|++|+||||||+.+++...+. -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 468999999999999999999865444 45777775
No 30
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.61 E-value=0.00024 Score=77.59 Aligned_cols=138 Identities=16% Similarity=0.072 Sum_probs=81.6
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCccccc---ceEEEEEcCCC---CCHHHHHHHHH---
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYF---DCHAWVRVSIA---YDFGKILDDII--- 242 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F---~~~~wv~vs~~---~~~~~i~~~i~--- 242 (518)
.+..+..+.+.+... ....+.|+|++|+||||||+.+++.......+ ...-|+.+... .+...+...++
T Consensus 159 qs~~~~~l~~~ia~~--~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~ 236 (615)
T TIGR02903 159 QERAIKALLAKVASP--FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSV 236 (615)
T ss_pred CcHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCc
Confidence 444555566665433 34579999999999999999998854333333 12345555421 23333222111
Q ss_pred ------------hhcCCCCC---------C-----CccccCCHHHHHHHHHHHhccCcEEEEEcCCCC-ChHHHHHHhhh
Q 010117 243 ------------NPVMPPSR---------V-----SVIIGEDYQLKKSILQDYLTAKKYFIVLDDVFD-DSEIWHDLVEF 295 (518)
Q Consensus 243 ------------~~l~~~~~---------~-----~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~-~~~~~~~l~~~ 295 (518)
...+.... . ......+ ...+..|.+.++.++++++.|+.|. +...|+.++..
T Consensus 237 ~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~ 315 (615)
T TIGR02903 237 HDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-PLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKL 315 (615)
T ss_pred cHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-HHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhh
Confidence 11111000 0 0012222 3357889999999999999888776 45678888887
Q ss_pred cCCCCCCcEEEE--Eecch
Q 010117 296 LPDNQNGSRVLI--TLLWF 312 (518)
Q Consensus 296 l~~~~~gskIiv--TTR~~ 312 (518)
+....+...|+| ||++.
T Consensus 316 ~~~~~~~~~VLI~aTt~~~ 334 (615)
T TIGR02903 316 FEEGAPADFVLIGATTRDP 334 (615)
T ss_pred cccCccceEEEEEeccccc
Confidence 776666665666 56654
No 31
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.57 E-value=0.00028 Score=73.65 Aligned_cols=96 Identities=19% Similarity=0.210 Sum_probs=55.5
Q ss_pred HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCC
Q 010117 179 LFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGED 258 (518)
Q Consensus 179 l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~ 258 (518)
+.+++..+ ....+.++|++|+||||||+.+.+. ....| +.++....-..-++.
T Consensus 27 L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~~--~~~~~-----~~l~a~~~~~~~ir~------------------ 79 (413)
T PRK13342 27 LRRMIEAG--RLSSMILWGPPGTGKTTLARIIAGA--TDAPF-----EALSAVTSGVKDLRE------------------ 79 (413)
T ss_pred HHHHHHcC--CCceEEEECCCCCCHHHHHHHHHHH--hCCCE-----EEEecccccHHHHHH------------------
Confidence 55555443 3557888999999999999999983 33333 333222111111111
Q ss_pred HHHHHHHHHHH-hccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEE
Q 010117 259 YQLKKSILQDY-LTAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLI 307 (518)
Q Consensus 259 ~~~~~~~l~~~-L~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIiv 307 (518)
+....... ..+++.+|++|+++. .....+.+...+.. |..++|
T Consensus 80 ---ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI 124 (413)
T PRK13342 80 ---VIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLI 124 (413)
T ss_pred ---HHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEE
Confidence 22222211 245788999999987 45566666655543 455555
No 32
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.55 E-value=0.00043 Score=59.50 Aligned_cols=68 Identities=12% Similarity=0.107 Sum_probs=40.6
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHHhcc
Q 010117 193 VAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDYLTA 272 (518)
Q Consensus 193 i~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~ 272 (518)
|.|+|+.|+||||+|+.+.+. ...+ .+.+..+.-.+. . .......+...+.+.-..
T Consensus 1 ill~G~~G~GKT~l~~~la~~--l~~~---~~~i~~~~~~~~--------------~-----~~~~~~~i~~~~~~~~~~ 56 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY--LGFP---FIEIDGSELISS--------------Y-----AGDSEQKIRDFFKKAKKS 56 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH--TTSE---EEEEETTHHHTS--------------S-----TTHHHHHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhh--cccc---cccccccccccc--------------c-----cccccccccccccccccc
Confidence 578999999999999999994 3322 233333221100 0 122333344444443333
Q ss_pred C-cEEEEEcCCCC
Q 010117 273 K-KYFIVLDDVFD 284 (518)
Q Consensus 273 k-r~LlVLDdvw~ 284 (518)
. +.+|++||+..
T Consensus 57 ~~~~vl~iDe~d~ 69 (132)
T PF00004_consen 57 AKPCVLFIDEIDK 69 (132)
T ss_dssp STSEEEEEETGGG
T ss_pred ccceeeeeccchh
Confidence 4 89999999976
No 33
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.55 E-value=0.00072 Score=74.23 Aligned_cols=110 Identities=9% Similarity=-0.037 Sum_probs=72.6
Q ss_pred hhhhHHHHHHHHhcC---CCCceEEEEEcCCCccHHHHHHHHHcCCC---cccccc--eEEEEEcCCCCCHHHHHHHHHh
Q 010117 172 FERGREELFDLLIEG---PPRLSVVAILDSSGFEMTAFAADAFNNNH---VKFYFD--CHAWVRVSIAYDFGKILDDIIN 243 (518)
Q Consensus 172 r~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLA~~v~~d~~---~~~~F~--~~~wv~vs~~~~~~~i~~~i~~ 243 (518)
||++.++|...|... ...-.++-|.|++|.|||+.++.|.+.-. .+...+ ..++|....-.+...++..|..
T Consensus 760 REeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~q 839 (1164)
T PTZ00112 760 REKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYK 839 (1164)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHH
Confidence 999999998888652 33346788999999999999999987311 011122 2456666666678888899998
Q ss_pred hcCCCCCCCccccCCHHHHHHHHHHHhcc---CcEEEEEcCCCC
Q 010117 244 PVMPPSRVSVIIGEDYQLKKSILQDYLTA---KKYFIVLDDVFD 284 (518)
Q Consensus 244 ~l~~~~~~~~~~~~~~~~~~~~l~~~L~~---kr~LlVLDdvw~ 284 (518)
++..... ............+...+.. ...+||||+|..
T Consensus 840 qL~g~~P---~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~ 880 (1164)
T PTZ00112 840 QLFNKKP---PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDY 880 (1164)
T ss_pred HHcCCCC---CccccHHHHHHHHHhhhhcccccceEEEeehHhh
Confidence 8854432 1223333444455554422 245999999976
No 34
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.55 E-value=0.00052 Score=69.50 Aligned_cols=39 Identities=15% Similarity=0.015 Sum_probs=31.2
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
++..++.+.+++..+ ..+.+.++|+.|+||||+|+.+.+
T Consensus 20 ~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~ 58 (337)
T PRK12402 20 QDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALAR 58 (337)
T ss_pred CHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHH
Confidence 666777777777654 345678999999999999999887
No 35
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.51 E-value=0.0011 Score=64.60 Aligned_cols=108 Identities=13% Similarity=0.088 Sum_probs=79.2
Q ss_pred hhhHHHHHHHHhcC-CCCceEEEEEcCCCccHHHHHHHHHcCCCcccc----cceEEEEEcCCCCCHHHHHHHHHhhcCC
Q 010117 173 ERGREELFDLLIEG-PPRLSVVAILDSSGFEMTAFAADAFNNNHVKFY----FDCHAWVRVSIAYDFGKILDDIINPVMP 247 (518)
Q Consensus 173 ~~~~~~l~~~L~~~-~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~----F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 247 (518)
.+..+++.++|..+ ....+-+.|||.+|.|||++++......-.... --.++-|.....++...+...|+.+++.
T Consensus 43 ~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 43 KEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred HHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 44556666666554 345677999999999999999998865322111 1147778888999999999999999999
Q ss_pred CCCCCccccCCHHHHHHHHHHHhcc-CcEEEEEcCCCC
Q 010117 248 PSRVSVIIGEDYQLKKSILQDYLTA-KKYFIVLDDVFD 284 (518)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVLDdvw~ 284 (518)
+.. .......+.......++. +--+||+|.+.+
T Consensus 123 P~~----~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~ 156 (302)
T PF05621_consen 123 PYR----PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHN 156 (302)
T ss_pred ccC----CCCCHHHHHHHHHHHHHHcCCcEEEeechHH
Confidence 876 445556666666667755 455899999966
No 36
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.51 E-value=0.00037 Score=69.64 Aligned_cols=93 Identities=19% Similarity=0.204 Sum_probs=57.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHH-H
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSIL-Q 267 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l-~ 267 (518)
++.-.-.||++|+||||||+.+.. .....|. .+|-..+-. .+.....+.- +
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~-----~~sAv~~gv---------------------kdlr~i~e~a~~ 98 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAG--TTNAAFE-----ALSAVTSGV---------------------KDLREIIEEARK 98 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHH--hhCCceE-----EeccccccH---------------------HHHHHHHHHHHH
Confidence 577788999999999999999998 5555552 333332211 1222222222 2
Q ss_pred HHhccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEE--Eecch
Q 010117 268 DYLTAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLI--TLLWF 312 (518)
Q Consensus 268 ~~L~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIiv--TTR~~ 312 (518)
....|++.+|.+|.|.. +..+-+.+ ||.-.+|.-|+| ||-++
T Consensus 99 ~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENP 143 (436)
T COG2256 99 NRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENP 143 (436)
T ss_pred HHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCC
Confidence 22348999999999976 34444433 444556777776 45544
No 37
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.49 E-value=0.00053 Score=65.18 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=31.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSI 230 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~ 230 (518)
-.++|+|..|.|||||...+.. .....|+++++++-..
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~~~ 51 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITPEY 51 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEecCC
Confidence 4688999999999999999988 5777898877775533
No 38
>PLN03025 replication factor C subunit; Provisional
Probab=97.48 E-value=0.0051 Score=61.89 Aligned_cols=117 Identities=11% Similarity=0.056 Sum_probs=59.6
Q ss_pred hhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcc-cccce-EEEEEcCCCCCHHHHHHHHHhhcCCCCC
Q 010117 173 ERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVK-FYFDC-HAWVRVSIAYDFGKILDDIINPVMPPSR 250 (518)
Q Consensus 173 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~-~~F~~-~~wv~vs~~~~~~~i~~~i~~~l~~~~~ 250 (518)
++.++.|.+++..+ +.+-+-++|+.|+||||+|+.+.+. .. ..|.. .+-+..|...... .++++++.......
T Consensus 19 ~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~--l~~~~~~~~~~eln~sd~~~~~-~vr~~i~~~~~~~~ 93 (319)
T PLN03025 19 EDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHE--LLGPNYKEAVLELNASDDRGID-VVRNKIKMFAQKKV 93 (319)
T ss_pred HHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHH--HhcccCccceeeecccccccHH-HHHHHHHHHHhccc
Confidence 44455566555543 3445779999999999999998873 21 12211 1111222221111 12222211110000
Q ss_pred CCccccCCHHHHHHHHHHHhccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEEecc
Q 010117 251 VSVIIGEDYQLKKSILQDYLTAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLITLLW 311 (518)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~ 311 (518)
..-.++.-+++||++.. .....+.+...+..-...++++++|..
T Consensus 94 -----------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~ 138 (319)
T PLN03025 94 -----------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNT 138 (319)
T ss_pred -----------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCC
Confidence 00013466999999987 344555555555433345677776653
No 39
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.43 E-value=0.0014 Score=71.36 Aligned_cols=133 Identities=10% Similarity=0.020 Sum_probs=69.4
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRV 251 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~ 251 (518)
.+..++.|.+++..+. -...+.++|..|+||||+|+.+.+.-.....++ +..+..-...+.|...-......
T Consensus 21 Qe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~I~~G~h~DviE 92 (830)
T PRK07003 21 QEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACREIDEGRFVDYVE 92 (830)
T ss_pred cHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHHHhcCCCceEEE
Confidence 5666677777776553 234556999999999999998877321111110 01111111122221110000000
Q ss_pred -CccccCCHHHHHHHHHHH----hccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEEecch
Q 010117 252 -SVIIGEDYQLKKSILQDY----LTAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLITLLWF 312 (518)
Q Consensus 252 -~~~~~~~~~~~~~~l~~~----L~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~ 312 (518)
........+++.+.+... ..++.-++|||++.. ....|+.+...+..-....++|+||.+.
T Consensus 93 IDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~ 159 (830)
T PRK07003 93 MDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDP 159 (830)
T ss_pred ecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 000112223333333221 124555889999987 5677888888776555577777777653
No 40
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.37 E-value=0.00013 Score=73.22 Aligned_cols=249 Identities=13% Similarity=0.041 Sum_probs=140.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEE-EcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHH
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWV-RVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQ 267 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv-~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 267 (518)
..+.+.++|.|||||||++-.+.. ++..|..-.|. ...+-.|...+.-.....++.... +-+.....+.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~-------~g~~~~~~~~ 82 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ-------PGDSAVDTLV 82 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc-------cchHHHHHHH
Confidence 468999999999999999998877 66677655544 444444444444444444555543 2233455677
Q ss_pred HHhccCcEEEEEcCCCCChHHHHHHhhhcCCCCCCcEEEEEecch-----------------------------------
Q 010117 268 DYLTAKKYFIVLDDVFDDSEIWHDLVEFLPDNQNGSRVLITLLWF----------------------------------- 312 (518)
Q Consensus 268 ~~L~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~----------------------------------- 312 (518)
..+.++|.++|+||..+-.+.-..+.-.+..+...-.|+.|+|..
T Consensus 83 ~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 83 RRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred HHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 888899999999998651111122222222333333455555544
Q ss_pred -----------hhhhhccCCCc-hhhhcccccCCChH--------HHHHHHHHhCCCCCcCCCCCCchHHhhhhhcccCC
Q 010117 313 -----------ELQKGEKIQPD-SVLVGGPMIRIKHE--------AWQFFILHYGNTPLENYIGQKAIPTILSQIHSVWE 372 (518)
Q Consensus 313 -----------~va~~~~~~Pl-i~~vg~~L~~~~~~--------~W~~~~~~l~~~~~~~~~~~~~i~~~l~~~~sy~~ 372 (518)
+++....|.|+ |...++..+.-... .|..+..- . .+. ........+.+. +||.-
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~--r~a-~~~~qtl~asl~--ws~~l 236 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-A--RLA-VLRQQTLRASLD--WSYAL 236 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-c--ccc-hhHHHhccchhh--hhhHh
Confidence 11112256666 22222222211111 12111111 0 000 122346788899 99999
Q ss_pred ccHhHHHHHhhhhcCCCCcccchhhHHHHhhhCCCCCCCCChHHHHHHHHHHHHHcCceeeeeecCCCceeEEEeCHHHH
Q 010117 373 LPFHLKVCCIYLCVFPPSIEISTRQLCQLWIAEGLIPGNYNSERMVEEYLKELSNSGFIQVGKIRAGGTIKACYVPSYVY 452 (518)
Q Consensus 373 Lp~~lk~cfly~s~FP~~~~i~~~~Li~~Wiaeg~i~~~~~~e~~~~~~~~~Lv~rsll~~~~~~~~g~~~~~~mHdlv~ 452 (518)
|...-+--|..++.|...+.-. ...|.+-|=... .+.-..-.-+..|++.|++...+.. | ...|+.-+-+|
T Consensus 237 Ltgwe~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~--~~~y~~~~a~~ll~~kslv~a~~~~--~-~a~~Rl~eT~r 307 (414)
T COG3903 237 LTGWERALFGRLAVFVGGFDLG----LALAVAAGADVD--VPRYLVLLALTLLVDKSLVVALDLL--G-RARYRLLETGR 307 (414)
T ss_pred hhhHHHHHhcchhhhhhhhccc----HHHHHhcCCccc--cchHHHHHHHHHHhhccchhhhhhh--h-HHHHHHHHHHH
Confidence 9988888899999999887654 344545442110 0122333446678888888654422 1 13477778888
Q ss_pred HHHHHHhhhc
Q 010117 453 AALRWVAEKM 462 (518)
Q Consensus 453 d~a~~~s~~e 462 (518)
.|+..+-.+.
T Consensus 308 ~YalaeL~r~ 317 (414)
T COG3903 308 RYALAELHRS 317 (414)
T ss_pred HHHHHHHHhh
Confidence 8887776543
No 41
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.37 E-value=0.00064 Score=66.93 Aligned_cols=99 Identities=20% Similarity=0.232 Sum_probs=63.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHH
Q 010117 188 PRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQ 267 (518)
Q Consensus 188 ~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 267 (518)
..+..+.+||++|+||||||+.+.+..+-.. ..||..|-...-..-.+.|+++... .
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~-------------------~ 216 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN-------------------E 216 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH-------------------H
Confidence 3578889999999999999999998644443 4467766554333333334332211 1
Q ss_pred HHhccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEE--Eecch
Q 010117 268 DYLTAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLI--TLLWF 312 (518)
Q Consensus 268 ~~L~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIiv--TTR~~ 312 (518)
..+.++|-.|.+|.|.. +..+- -..||.-.+|+-++| ||-++
T Consensus 217 ~~l~krkTilFiDEiHRFNksQQ---D~fLP~VE~G~I~lIGATTENP 261 (554)
T KOG2028|consen 217 KSLTKRKTILFIDEIHRFNKSQQ---DTFLPHVENGDITLIGATTENP 261 (554)
T ss_pred HhhhcceeEEEeHHhhhhhhhhh---hcccceeccCceEEEecccCCC
Confidence 22456889999999965 22222 234666677887766 56655
No 42
>PRK08727 hypothetical protein; Validated
Probab=97.36 E-value=0.00031 Score=67.27 Aligned_cols=37 Identities=11% Similarity=0.016 Sum_probs=27.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRV 228 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~v 228 (518)
...+.|+|..|+|||+|++.+++ ...+....+.++++
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~--~~~~~~~~~~y~~~ 77 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCA--AAEQAGRSSAYLPL 77 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEeH
Confidence 35699999999999999999988 33333334566654
No 43
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.33 E-value=0.001 Score=73.64 Aligned_cols=98 Identities=18% Similarity=0.261 Sum_probs=55.1
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccC
Q 010117 178 ELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGE 257 (518)
Q Consensus 178 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~ 257 (518)
.+.+.+..+ ....+.++|++|+||||||+.+++ .....|. .++.... ...
T Consensus 42 ~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f~-----~lna~~~---------------------~i~ 91 (725)
T PRK13341 42 LLRRAIKAD--RVGSLILYGPPGVGKTTLARIIAN--HTRAHFS-----SLNAVLA---------------------GVK 91 (725)
T ss_pred HHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHH--HhcCcce-----eehhhhh---------------------hhH
Confidence 344444433 456678999999999999999998 4444441 1111000 000
Q ss_pred CHHHHHHHHHHHh--ccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEE
Q 010117 258 DYQLKKSILQDYL--TAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLIT 308 (518)
Q Consensus 258 ~~~~~~~~l~~~L--~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivT 308 (518)
+..+......+.+ .+++.+|+|||++. +...++.+...+. .|+.++|+
T Consensus 92 dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~ 142 (725)
T PRK13341 92 DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIG 142 (725)
T ss_pred HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEE
Confidence 1111122222222 24677999999976 3666666665443 35556654
No 44
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.29 E-value=0.0039 Score=60.82 Aligned_cols=58 Identities=12% Similarity=0.079 Sum_probs=39.3
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHH
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKIL 238 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~ 238 (518)
+..-++++...+..+ .-|-+.|..|+|||+||+.+.+ ..... .+.++.+...+..+++
T Consensus 7 ~~~l~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~--~lg~~---~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 7 VKRVTSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVAR--KRDRP---VMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHH--HhCCC---EEEEeCCccCCHHHHh
Confidence 555666777777654 3456899999999999999987 33222 3456666665555554
No 45
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.27 E-value=0.0033 Score=64.43 Aligned_cols=131 Identities=10% Similarity=-0.003 Sum_probs=64.9
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRV 251 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~ 251 (518)
-+..++.+.+.+..+. -...+.++|+.|+||||+|+.+.+.-....... ..++..-..-.++..........
T Consensus 21 q~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~~~~~~d~~~ 92 (363)
T PRK14961 21 QKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIEKGLCLDLIE 92 (363)
T ss_pred hHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHhcCCCCceEE
Confidence 4555566666666542 345678999999999999999987321111000 00000001111111110000000
Q ss_pred Ccc-ccCCHHHHHHHHHHHh-----ccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEEecc
Q 010117 252 SVI-IGEDYQLKKSILQDYL-----TAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLITLLW 311 (518)
Q Consensus 252 ~~~-~~~~~~~~~~~l~~~L-----~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~ 311 (518)
... .....++... +.+.+ .+++-++|+|++.. ....++.+...+.......++|++|.+
T Consensus 93 ~~~~~~~~v~~ir~-i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~ 158 (363)
T PRK14961 93 IDAASRTKVEEMRE-ILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTD 158 (363)
T ss_pred ecccccCCHHHHHH-HHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 000 0112222222 11221 23556999999987 455677787777655556677776644
No 46
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.25 E-value=0.0022 Score=64.44 Aligned_cols=114 Identities=16% Similarity=0.111 Sum_probs=63.4
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRV 251 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~ 251 (518)
.+..++.+..++..+. ...++.++|+.|+||||+|+.+++. .... ...++.+. ... ..+++.+.......
T Consensus 26 ~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~--~~~~---~~~i~~~~-~~~-~~i~~~l~~~~~~~-- 95 (316)
T PHA02544 26 PAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNE--VGAE---VLFVNGSD-CRI-DFVRNRLTRFASTV-- 95 (316)
T ss_pred cHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHH--hCcc---ceEeccCc-ccH-HHHHHHHHHHHHhh--
Confidence 6667777888777543 3467777999999999999999883 2222 22333332 111 11111111100000
Q ss_pred CccccCCHHHHHHHHHHHhccCcEEEEEcCCCCC--hHHHHHHhhhcCCCCCCcEEEEEecch
Q 010117 252 SVIIGEDYQLKKSILQDYLTAKKYFIVLDDVFDD--SEIWHDLVEFLPDNQNGSRVLITLLWF 312 (518)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~~--~~~~~~l~~~l~~~~~gskIivTTR~~ 312 (518)
.+.+.+-+||+||+... ....+.+...+.....++++|+||...
T Consensus 96 -----------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 96 -----------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred -----------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 01134558899999751 233344444444444577888888643
No 47
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.23 E-value=0.003 Score=60.06 Aligned_cols=128 Identities=12% Similarity=0.058 Sum_probs=74.1
Q ss_pred HhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCccccc------ceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC--C--
Q 010117 183 LIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYF------DCHAWVRVSIAYDFGKILDDIINPVMPPSRV--S-- 252 (518)
Q Consensus 183 L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F------~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~--~-- 252 (518)
|..+=..-.++.|+|.+|+|||+||.++... ....- ..++|++....++...+. ++.+..+..... .
T Consensus 12 l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i 88 (226)
T cd01393 12 LGGGIPTGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNI 88 (226)
T ss_pred hCCCCcCCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccE
Confidence 3334345579999999999999999988763 22222 457899988877765554 333332221110 0
Q ss_pred -ccccCCHHHHHHHHHHHhc---c-CcEEEEEcCCCC-C------h-------HHHHHHhhhcC--CCCCCcEEEEEecc
Q 010117 253 -VIIGEDYQLKKSILQDYLT---A-KKYFIVLDDVFD-D------S-------EIWHDLVEFLP--DNQNGSRVLITLLW 311 (518)
Q Consensus 253 -~~~~~~~~~~~~~l~~~L~---~-kr~LlVLDdvw~-~------~-------~~~~~l~~~l~--~~~~gskIivTTR~ 311 (518)
-....+.+++...+...+. . +--|+|+|.+.. . . .....+...|. ....++.||+|+..
T Consensus 89 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq~ 168 (226)
T cd01393 89 YVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTNQV 168 (226)
T ss_pred EEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEEE
Confidence 0123456666666666653 3 455999999854 0 0 11122222222 23457889999865
Q ss_pred hh
Q 010117 312 FE 313 (518)
Q Consensus 312 ~~ 313 (518)
..
T Consensus 169 ~~ 170 (226)
T cd01393 169 RA 170 (226)
T ss_pred ee
Confidence 43
No 48
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.23 E-value=0.0029 Score=67.60 Aligned_cols=113 Identities=10% Similarity=0.028 Sum_probs=64.2
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccc---------------------cceEEEEEcCC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFY---------------------FDCHAWVRVSI 230 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~---------------------F~~~~wv~vs~ 230 (518)
-+..++.|...+..+. -...+.++|+.|+||||+|+.+.+. +... |...+++....
T Consensus 21 q~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~--L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas 97 (546)
T PRK14957 21 QQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKC--LNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAAS 97 (546)
T ss_pred cHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH--hCCCCCCCCCCCcccHHHHHHhcCCCCceEEeeccc
Confidence 4555566777666542 3355788999999999999998862 2110 11111111111
Q ss_pred CCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHH-hccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEE
Q 010117 231 AYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDY-LTAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLIT 308 (518)
Q Consensus 231 ~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivT 308 (518)
.. ...+..++.+.+... ..+++-++|+|++.. ....++.+...+......+.+|++
T Consensus 98 ~~----------------------gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~ 155 (546)
T PRK14957 98 RT----------------------GVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILA 155 (546)
T ss_pred cc----------------------CHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEE
Confidence 11 111222333333221 245677999999976 467788888877765456665544
Q ss_pred e
Q 010117 309 L 309 (518)
Q Consensus 309 T 309 (518)
|
T Consensus 156 T 156 (546)
T PRK14957 156 T 156 (546)
T ss_pred E
Confidence 4
No 49
>PRK08181 transposase; Validated
Probab=97.20 E-value=0.00057 Score=66.57 Aligned_cols=99 Identities=14% Similarity=0.052 Sum_probs=53.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHHh
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDYL 270 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L 270 (518)
.-+.++|+.|+|||.||..+.+ ........+++++ ..+++..+..... ..+.... +. .+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~~------~~~L~~~l~~a~~---------~~~~~~~---l~-~l 165 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFTR------TTDLVQKLQVARR---------ELQLESA---IA-KL 165 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHH--HHHHcCCceeeee------HHHHHHHHHHHHh---------CCcHHHH---HH-HH
Confidence 3589999999999999999987 3333333455554 3455555543211 1122222 22 22
Q ss_pred ccCcEEEEEcCCCC-C-hHHH-HHHhhhcCCCCCCcEEEEEecc
Q 010117 271 TAKKYFIVLDDVFD-D-SEIW-HDLVEFLPDNQNGSRVLITLLW 311 (518)
Q Consensus 271 ~~kr~LlVLDdvw~-~-~~~~-~~l~~~l~~~~~gskIivTTR~ 311 (518)
. +-=||||||+.. . ...+ ..+...+.....+..+||||..
T Consensus 166 ~-~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~ 208 (269)
T PRK08181 166 D-KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQ 208 (269)
T ss_pred h-cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 1 334999999965 1 1222 2232222211112358888874
No 50
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.20 E-value=0.0042 Score=62.29 Aligned_cols=40 Identities=18% Similarity=0.058 Sum_probs=32.2
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
+++.++.+..++..+ ..+.+.++|..|+||||+|+.+.+.
T Consensus 22 ~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~ 61 (319)
T PRK00440 22 QEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARE 61 (319)
T ss_pred cHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 667777888887654 3445799999999999999999874
No 51
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.19 E-value=0.0053 Score=56.61 Aligned_cols=40 Identities=8% Similarity=0.161 Sum_probs=28.7
Q ss_pred cCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEEecc
Q 010117 272 AKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLITLLW 311 (518)
Q Consensus 272 ~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~ 311 (518)
+.+-++|+|++.. ....++.+...+......+.+|++|++
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~ 135 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPS 135 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 4566899999876 466778888777655556667777764
No 52
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.18 E-value=0.0043 Score=66.81 Aligned_cols=136 Identities=10% Similarity=0.019 Sum_probs=68.2
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhh-----cC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINP-----VM 246 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~-----l~ 246 (518)
-+..++.|.+.+..+. -...+.++|..|+||||+|+.+.+.-.-... +..--+ .+..+......+.|... +.
T Consensus 21 Qe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p-~~~~g~-~~~PCG~C~sC~~I~aG~hpDviE 97 (700)
T PRK12323 21 QEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGA-DGEGGI-TAQPCGQCRACTEIDAGRFVDYIE 97 (700)
T ss_pred cHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCc-cccccC-CCCCCcccHHHHHHHcCCCCcceE
Confidence 4555666777776553 3356788999999999999988763211000 000000 00011111111111110 00
Q ss_pred CCCCCCccccCCHHHHHHHHHHH----hccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEE-EEEecchhh
Q 010117 247 PPSRVSVIIGEDYQLKKSILQDY----LTAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRV-LITLLWFEL 314 (518)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskI-ivTTR~~~v 314 (518)
.... .....+++.+.+... ..++.-++|+|++.. ....++.|...+..-..++++ ++||...++
T Consensus 98 IdAa----s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kL 167 (700)
T PRK12323 98 MDAA----SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKI 167 (700)
T ss_pred eccc----ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhh
Confidence 0000 112233333333222 245667999999987 567888888877654445554 555544444
No 53
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.18 E-value=0.0016 Score=60.78 Aligned_cols=57 Identities=12% Similarity=0.101 Sum_probs=32.4
Q ss_pred CCCCCCChhhhhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCccccc
Q 010117 162 EGQPRVDESEFERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYF 220 (518)
Q Consensus 162 ~~~~~~~~~~r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F 220 (518)
.-..++.....-+...-+++........+.-+-.+|++|+||||||..+.+ +....|
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~ 78 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNF 78 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--E
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCe
Confidence 333444433322233333444444445688899999999999999999999 555555
No 54
>PRK10536 hypothetical protein; Provisional
Probab=97.18 E-value=0.002 Score=61.70 Aligned_cols=38 Identities=8% Similarity=0.070 Sum_probs=31.0
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
+......++.+|.+. .+|.+.|..|+|||+||..+..+
T Consensus 60 ~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 60 RNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHH
Confidence 666777777777653 49999999999999999987764
No 55
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.17 E-value=0.026 Score=61.10 Aligned_cols=132 Identities=10% Similarity=0.031 Sum_probs=69.8
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRV 251 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~ 251 (518)
.+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+. +.. .-|+.. .++..-..-+.|...-....-.
T Consensus 20 Qe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~--LnC----~~~~~~-~pCg~C~sC~~I~~g~hpDviE 91 (702)
T PRK14960 20 QNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKC--LNC----ETGVTS-TPCEVCATCKAVNEGRFIDLIE 91 (702)
T ss_pred cHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH--hCC----CcCCCC-CCCccCHHHHHHhcCCCCceEE
Confidence 5566777777777553 2467789999999999999998873 211 111111 1111111111111100000000
Q ss_pred Cc-cccCCHHHHHHHHHHH----hccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEEecc
Q 010117 252 SV-IIGEDYQLKKSILQDY----LTAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLITLLW 311 (518)
Q Consensus 252 ~~-~~~~~~~~~~~~l~~~----L~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~ 311 (518)
-. ......+++.+.+... ..++.-++|+|++.. .....+.+...+.....+.++|++|.+
T Consensus 92 IDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd 157 (702)
T PRK14960 92 IDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTD 157 (702)
T ss_pred ecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECC
Confidence 00 0112233332222211 235667899999987 467778888777655556677777755
No 56
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.17 E-value=0.0013 Score=67.39 Aligned_cols=47 Identities=15% Similarity=0.066 Sum_probs=34.4
Q ss_pred hhhhHHHHHHHHhcC-----------CCCceEEEEEcCCCccHHHHHHHHHcCCCccccc
Q 010117 172 FERGREELFDLLIEG-----------PPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYF 220 (518)
Q Consensus 172 r~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F 220 (518)
+++.+++|.+.+... -...+-+.++|++|+|||+||+.+++ .....|
T Consensus 127 l~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~ 184 (364)
T TIGR01242 127 LEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF 184 (364)
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE
Confidence 777888887766421 12345689999999999999999998 444443
No 57
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.16 E-value=0.003 Score=65.38 Aligned_cols=96 Identities=17% Similarity=0.107 Sum_probs=61.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHHhc
Q 010117 192 VVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDYLT 271 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~ 271 (518)
++.|.|+.++|||||++.+... ..+. .+.+..-+... ......+....+.+.-.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~---------------------~~~~l~d~~~~~~~~~~ 92 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRL---------------------DRIELLDLLRAYIELKE 92 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhc---------------------chhhHHHHHHHHHHhhc
Confidence 9999999999999999777663 2222 34443222211 00011111122222222
Q ss_pred cCcEEEEEcCCCCChHHHHHHhhhcCCCCCCcEEEEEecchhhh
Q 010117 272 AKKYFIVLDDVFDDSEIWHDLVEFLPDNQNGSRVLITLLWFELQ 315 (518)
Q Consensus 272 ~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~va 315 (518)
.++.+|+||.|.. ...|......+.+..+. +|++|+-+..+-
T Consensus 93 ~~~~yifLDEIq~-v~~W~~~lk~l~d~~~~-~v~itgsss~ll 134 (398)
T COG1373 93 REKSYIFLDEIQN-VPDWERALKYLYDRGNL-DVLITGSSSSLL 134 (398)
T ss_pred cCCceEEEecccC-chhHHHHHHHHHccccc-eEEEECCchhhh
Confidence 2778999999999 99999999888877666 899998876543
No 58
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.15 E-value=0.00063 Score=72.31 Aligned_cols=134 Identities=13% Similarity=-0.028 Sum_probs=66.5
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRV 251 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~ 251 (518)
-+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+.-.....+....|.|.+... +..-....+..+.....
T Consensus 19 q~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv~el~~~~~- 95 (504)
T PRK14963 19 QEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDVLEIDAASN- 95 (504)
T ss_pred hHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCceEEeccccc-
Confidence 3445566666665542 33557999999999999999988742222222222333321110 00000000001111100
Q ss_pred CccccCCHHHHHHHHHHH-hccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEEec
Q 010117 252 SVIIGEDYQLKKSILQDY-LTAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLITLL 310 (518)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR 310 (518)
....+..++...+... ..+++-++|+|+++. ....++.+...+......+.+|++|.
T Consensus 96 --~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~ 154 (504)
T PRK14963 96 --NSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATT 154 (504)
T ss_pred --CCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcC
Confidence 0111122222222211 234667999999987 46678888887765544555555554
No 59
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.13 E-value=0.034 Score=59.16 Aligned_cols=139 Identities=11% Similarity=-0.011 Sum_probs=68.0
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccce-EEEEEcCCCCCHHHHHHHHHhhcCCCCC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDC-HAWVRVSIAYDFGKILDDIINPVMPPSR 250 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~-~~wv~vs~~~~~~~i~~~i~~~l~~~~~ 250 (518)
-+..+..|...+..+. -..-+-++|+.|+||||+|+.+++.-.....+.. ..+. .+..-.....|.........
T Consensus 26 q~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~----~C~~C~~C~~i~~~~h~Dv~ 100 (507)
T PRK06645 26 QEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIK----TCEQCTNCISFNNHNHPDII 100 (507)
T ss_pred cHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcC----CCCCChHHHHHhcCCCCcEE
Confidence 4444555555555442 3357889999999999999999873211111000 0000 00000001111110000000
Q ss_pred C-CccccCCHHHHHHHHHHH----hccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEE-EEecchhhh
Q 010117 251 V-SVIIGEDYQLKKSILQDY----LTAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVL-ITLLWFELQ 315 (518)
Q Consensus 251 ~-~~~~~~~~~~~~~~l~~~----L~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIi-vTTR~~~va 315 (518)
. ........+++...+... +.+++-++|+|+++. ....|+.+...+......+.+| +||+...+.
T Consensus 101 eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~ 172 (507)
T PRK06645 101 EIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIP 172 (507)
T ss_pred EeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhh
Confidence 0 000112233333322222 245677999999988 5677888888877655566655 455544443
No 60
>PRK04195 replication factor C large subunit; Provisional
Probab=97.12 E-value=0.0025 Score=67.90 Aligned_cols=114 Identities=13% Similarity=0.170 Sum_probs=65.0
Q ss_pred hhhhHHHHHHHHhcC--CCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCC
Q 010117 172 FERGREELFDLLIEG--PPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPS 249 (518)
Q Consensus 172 r~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~ 249 (518)
.++.++.+.+|+..- ....+.+.|+|+.|+||||+|+.+.++ .. |+ .+-++.|...+. ..+..++.......
T Consensus 19 ~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e--l~--~~-~ielnasd~r~~-~~i~~~i~~~~~~~ 92 (482)
T PRK04195 19 NEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND--YG--WE-VIELNASDQRTA-DVIERVAGEAATSG 92 (482)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--cC--CC-EEEEcccccccH-HHHHHHHHHhhccC
Confidence 667777787777642 123678999999999999999999994 32 22 222344433222 22333332221111
Q ss_pred CCCccccCCHHHHHHHHHHHhccCcEEEEEcCCCC-C----hHHHHHHhhhcCCCCCCcEEEEEecc
Q 010117 250 RVSVIIGEDYQLKKSILQDYLTAKKYFIVLDDVFD-D----SEIWHDLVEFLPDNQNGSRVLITLLW 311 (518)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~-~----~~~~~~l~~~l~~~~~gskIivTTR~ 311 (518)
. ....++-+||+|++.. . ...+..+...+... +..||+||.+
T Consensus 93 s------------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~--~~~iIli~n~ 139 (482)
T PRK04195 93 S------------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIKKA--KQPIILTAND 139 (482)
T ss_pred c------------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHHcC--CCCEEEeccC
Confidence 0 0013677999999976 1 13456666555422 3446666643
No 61
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.09 E-value=0.0042 Score=69.11 Aligned_cols=129 Identities=13% Similarity=0.047 Sum_probs=65.0
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhh-------
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINP------- 244 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~------- 244 (518)
-+..++.|.+.+..+. -...+.++|+.|+||||+|+.+.+. +...-. +... .+..-..-..|...
T Consensus 21 Qe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~--Lnce~~----~~~~-pCg~C~sC~~i~~g~~~DviE 92 (944)
T PRK14949 21 QSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKG--LNCEQG----VTAT-PCGVCSSCVEIAQGRFVDLIE 92 (944)
T ss_pred cHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHh--ccCccC----CCCC-CCCCchHHHHHhcCCCceEEE
Confidence 3445556666665542 2344689999999999999999873 322100 0000 00000000011100
Q ss_pred cCCCCCCCccccCCHHHHHHHHHHH-hccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEEecc
Q 010117 245 VMPPSRVSVIIGEDYQLKKSILQDY-LTAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLITLLW 311 (518)
Q Consensus 245 l~~~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~ 311 (518)
+..... ....+..++...+... ..+++-++|+|++.. ....++.|+..+-.-....++|++|.+
T Consensus 93 idAas~---~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe 158 (944)
T PRK14949 93 VDAASR---TKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTD 158 (944)
T ss_pred eccccc---cCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCC
Confidence 000000 0111222233222211 246777999999987 577888888777654445666555443
No 62
>PRK06526 transposase; Provisional
Probab=97.07 E-value=0.00061 Score=65.93 Aligned_cols=23 Identities=22% Similarity=0.091 Sum_probs=20.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.-+.|+|++|+|||+||..+.+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHH
Confidence 46899999999999999998773
No 63
>PRK12377 putative replication protein; Provisional
Probab=97.04 E-value=0.0033 Score=60.54 Aligned_cols=101 Identities=13% Similarity=0.003 Sum_probs=55.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDY 269 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 269 (518)
...+.++|..|+|||+||..+.+ .+......++++++. +++..|-...... ..... +.+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~--~l~~~g~~v~~i~~~------~l~~~l~~~~~~~--------~~~~~----~l~~ 160 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGN--RLLAKGRSVIVVTVP------DVMSRLHESYDNG--------QSGEK----FLQE 160 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEEEHH------HHHHHHHHHHhcc--------chHHH----HHHH
Confidence 46789999999999999999999 444444445666543 4444443332111 01111 2222
Q ss_pred hccCcEEEEEcCCCCC-hHHH--HHHhhhcCCC-CCCcEEEEEecc
Q 010117 270 LTAKKYFIVLDDVFDD-SEIW--HDLVEFLPDN-QNGSRVLITLLW 311 (518)
Q Consensus 270 L~~kr~LlVLDdvw~~-~~~~--~~l~~~l~~~-~~gskIivTTR~ 311 (518)
+ .+-=||||||+... ...| +.+...+... .+.--+||||..
T Consensus 161 l-~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 161 L-CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred h-cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 2 34569999999441 2223 2233322211 112347888763
No 64
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.03 E-value=0.002 Score=61.76 Aligned_cols=38 Identities=8% Similarity=0.046 Sum_probs=27.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVS 229 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs 229 (518)
...+.|+|+.|+|||+|++.+++. ....-..+.++++.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~ 82 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLD 82 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHH
Confidence 457899999999999999999883 33222335566553
No 65
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.03 E-value=0.0019 Score=61.10 Aligned_cols=101 Identities=12% Similarity=0.169 Sum_probs=59.9
Q ss_pred CCCceEEEEEcCCCccHHHHHHHHHcCCCcccccc--eEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHH
Q 010117 187 PPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFD--CHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKS 264 (518)
Q Consensus 187 ~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~--~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~ 264 (518)
+.....+-|+|..|+|||.|.+.+++ ++.+... .++++ +..++...+...+... . ..
T Consensus 31 ~~~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~------~~~~f~~~~~~~~~~~---------~----~~ 89 (219)
T PF00308_consen 31 GERYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYL------SAEEFIREFADALRDG---------E----IE 89 (219)
T ss_dssp TTSSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEE------EHHHHHHHHHHHHHTT---------S----HH
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHH--HHHhccccccceee------cHHHHHHHHHHHHHcc---------c----ch
Confidence 33456688999999999999999998 5444322 24444 4455566665554332 1 12
Q ss_pred HHHHHhccCcEEEEEcCCCC--ChHHHHHH----hhhcCCCCCCcEEEEEecc
Q 010117 265 ILQDYLTAKKYFIVLDDVFD--DSEIWHDL----VEFLPDNQNGSRVLITLLW 311 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~--~~~~~~~l----~~~l~~~~~gskIivTTR~ 311 (518)
.+.+.+++ -=+|++||+.. ....|... ...+. ..|.+||+|++.
T Consensus 90 ~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~--~~~k~li~ts~~ 139 (219)
T PF00308_consen 90 EFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLI--ESGKQLILTSDR 139 (219)
T ss_dssp HHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHH--HTTSEEEEEESS
T ss_pred hhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHH--hhCCeEEEEeCC
Confidence 34444443 33788999976 23333322 22222 236789999963
No 66
>PRK05642 DNA replication initiation factor; Validated
Probab=97.02 E-value=0.0011 Score=63.56 Aligned_cols=37 Identities=8% Similarity=0.063 Sum_probs=26.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRV 228 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~v 228 (518)
...+.|+|..|+|||.|++.+.+ .....-..+++++.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~--~~~~~~~~v~y~~~ 81 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACL--RFEQRGEPAVYLPL 81 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEEeeH
Confidence 36789999999999999999987 33222234566654
No 67
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.00 E-value=0.0022 Score=64.67 Aligned_cols=107 Identities=10% Similarity=-0.056 Sum_probs=65.8
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCccccc-ce-EEEEEcCCCC-CHHHHHHHHHhhcCCCCCC
Q 010117 175 GREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYF-DC-HAWVRVSIAY-DFGKILDDIINPVMPPSRV 251 (518)
Q Consensus 175 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F-~~-~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~ 251 (518)
...++++.+..-. .-+.+.|+|..|+|||||++.+.+ .+...- +. ++|+.+.+.. ++.++++.+...+.....+
T Consensus 119 ~~~RvID~l~PiG-kGQR~LIvG~pGtGKTTLl~~la~--~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~d 195 (380)
T PRK12608 119 LSMRVVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQIAA--AVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFD 195 (380)
T ss_pred hhHhhhhheeecC-CCceEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCC
Confidence 3445777776522 224679999999999999999887 333222 33 4777777664 6788888888776654431
Q ss_pred Ccc-ccCCHHHHHHHHHHHh--ccCcEEEEEcCCCC
Q 010117 252 SVI-IGEDYQLKKSILQDYL--TAKKYFIVLDDVFD 284 (518)
Q Consensus 252 ~~~-~~~~~~~~~~~l~~~L--~~kr~LlVLDdvw~ 284 (518)
..+ ...........+.+++ .|++.+||+|++-.
T Consensus 196 e~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 196 RPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 100 0011111222233333 57999999999854
No 68
>PRK09183 transposase/IS protein; Provisional
Probab=96.99 E-value=0.0011 Score=64.41 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=19.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
..+.|+|+.|+|||+||..+.+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4677999999999999999976
No 69
>PRK07261 topology modulation protein; Provisional
Probab=96.98 E-value=0.0024 Score=58.01 Aligned_cols=66 Identities=14% Similarity=0.161 Sum_probs=42.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCcc-cccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHHh
Q 010117 192 VVAILDSSGFEMTAFAADAFNNNHVK-FYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDYL 270 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~d~~~~-~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L 270 (518)
.|.|+|++|+||||||+.+.....+. -+.|...|-... ...+.++....+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~-------------------------~~~~~~~~~~~~~~~~ 56 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW-------------------------QERDDDDMIADISNFL 56 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc-------------------------ccCCHHHHHHHHHHHH
Confidence 58999999999999999987642221 123444442110 2223455666677777
Q ss_pred ccCcEEEEEcCCCC
Q 010117 271 TAKKYFIVLDDVFD 284 (518)
Q Consensus 271 ~~kr~LlVLDdvw~ 284 (518)
.+.+ .|+|+...
T Consensus 57 ~~~~--wIidg~~~ 68 (171)
T PRK07261 57 LKHD--WIIDGNYS 68 (171)
T ss_pred hCCC--EEEcCcch
Confidence 7666 57788755
No 70
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.94 E-value=0.0088 Score=63.82 Aligned_cols=132 Identities=8% Similarity=-0.004 Sum_probs=65.9
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRV 251 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~ 251 (518)
-+..++.|.+++..+. -...+-++|+.|+||||+|+.+.+.-.-...+. ..+++.-...+.|...-......
T Consensus 21 q~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-------~~pCg~C~~C~~i~~g~~~d~~e 92 (509)
T PRK14958 21 QAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVS-------ANPCNDCENCREIDEGRFPDLFE 92 (509)
T ss_pred CHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------cccCCCCHHHHHHhcCCCceEEE
Confidence 4555667777776552 234578999999999999998877321111110 00111111111111100000000
Q ss_pred -CccccCCHHHHHHHHHH----HhccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEEecc
Q 010117 252 -SVIIGEDYQLKKSILQD----YLTAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLITLLW 311 (518)
Q Consensus 252 -~~~~~~~~~~~~~~l~~----~L~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~ 311 (518)
........+++.+.+.. -..++.-++|+|+|.. .....+.+...+..-...+++|++|.+
T Consensus 93 idaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd 158 (509)
T PRK14958 93 VDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTD 158 (509)
T ss_pred EcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 00011222222222211 1135666899999987 567778787777655456766665543
No 71
>PRK06921 hypothetical protein; Provisional
Probab=96.94 E-value=0.0014 Score=63.92 Aligned_cols=37 Identities=16% Similarity=0.035 Sum_probs=28.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccc-cceEEEEEc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFY-FDCHAWVRV 228 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~-F~~~~wv~v 228 (518)
..-+.++|..|+|||+||..+.+ .+... -..+++++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHhhhcCceEEEEEH
Confidence 46789999999999999999998 44433 334566654
No 72
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.93 E-value=0.0038 Score=59.70 Aligned_cols=98 Identities=10% Similarity=0.060 Sum_probs=58.2
Q ss_pred CCCCceEEEEEcCCCccHHHHHHHHHcCCCcccc----cceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC--Cc---ccc
Q 010117 186 GPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFY----FDCHAWVRVSIAYDFGKILDDIINPVMPPSRV--SV---IIG 256 (518)
Q Consensus 186 ~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~----F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~--~~---~~~ 256 (518)
+=..-.++.|+|.+|+|||+||.++.-....... -..++|++....++..++.. +++..+..... .. ...
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~ 93 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARA 93 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEec
Confidence 3344589999999999999999998753222221 35789999888877655543 33333321110 00 011
Q ss_pred CCHH---HHHHHHHHHhc-c-CcEEEEEcCCCC
Q 010117 257 EDYQ---LKKSILQDYLT-A-KKYFIVLDDVFD 284 (518)
Q Consensus 257 ~~~~---~~~~~l~~~L~-~-kr~LlVLDdvw~ 284 (518)
.+.+ .....+...+. . +--|||+|.+..
T Consensus 94 ~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 94 YNSDHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred CCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 2223 33344555553 3 567999999853
No 73
>PHA00729 NTP-binding motif containing protein
Probab=96.92 E-value=0.0043 Score=58.39 Aligned_cols=33 Identities=12% Similarity=0.175 Sum_probs=25.8
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 178 ELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 178 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
++++-+..+ ...-|.|.|.+|+||||||..+.+
T Consensus 7 ~~~~~l~~~--~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 7 KIVSAYNNN--GFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred HHHHHHhcC--CeEEEEEECCCCCCHHHHHHHHHH
Confidence 345555444 356789999999999999999988
No 74
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.91 E-value=0.01 Score=64.65 Aligned_cols=40 Identities=20% Similarity=0.083 Sum_probs=31.4
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+..++.|.+++..+. -...+.++|..|+||||+|+.+.+
T Consensus 21 Qe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk 60 (709)
T PRK08691 21 QEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAK 60 (709)
T ss_pred cHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHH
Confidence 5666777777777552 235688999999999999998877
No 75
>PRK09087 hypothetical protein; Validated
Probab=96.90 E-value=0.0032 Score=59.91 Aligned_cols=24 Identities=21% Similarity=0.088 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
-+.+.|+|..|+|||+|++.+++.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 467899999999999999998874
No 76
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.90 E-value=0.027 Score=63.58 Aligned_cols=47 Identities=13% Similarity=0.308 Sum_probs=32.7
Q ss_pred hhhhHHHHHHHHhc----CCCCceEEEEEcCCCccHHHHHHHHHcCCCccccc
Q 010117 172 FERGREELFDLLIE----GPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYF 220 (518)
Q Consensus 172 r~~~~~~l~~~L~~----~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F 220 (518)
.++.++.|.+++.. +..+-.++.++|++|+|||++|+.+.+ .....|
T Consensus 325 ~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~--~l~~~~ 375 (775)
T TIGR00763 325 LKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK--ALNRKF 375 (775)
T ss_pred hHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH--HhcCCe
Confidence 45556666665432 222345899999999999999999998 444444
No 77
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.89 E-value=0.0027 Score=61.65 Aligned_cols=92 Identities=9% Similarity=0.211 Sum_probs=57.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCccccc-ceEEEEEcCCCC-CHHHHHHHHHhhcCCCCCC---CccccCCHH-----
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKFYF-DCHAWVRVSIAY-DFGKILDDIINPVMPPSRV---SVIIGEDYQ----- 260 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F-~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~---~~~~~~~~~----- 260 (518)
+.++|+|..|+|||||++.+++ .++.+| +.++++-+++.. ++.++..++...-...... ...+.....
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 5799999999999999999999 555455 446677777765 4556666665431111000 000111111
Q ss_pred HHHHHHHHHh--c-cCcEEEEEcCCCC
Q 010117 261 LKKSILQDYL--T-AKKYFIVLDDVFD 284 (518)
Q Consensus 261 ~~~~~l~~~L--~-~kr~LlVLDdvw~ 284 (518)
...-.+.+++ + |+..||++||+-.
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 1223455666 3 8999999999855
No 78
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.88 E-value=0.0053 Score=58.93 Aligned_cols=117 Identities=9% Similarity=0.045 Sum_probs=61.3
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCcc
Q 010117 175 GREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVI 254 (518)
Q Consensus 175 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~ 254 (518)
.+..+.+....-......+.++|.+|+|||+||..+.+. ....-..+++++ ..+++..+-.....
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it------~~~l~~~l~~~~~~------- 148 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIIT------VADIMSAMKDTFSN------- 148 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEE------HHHHHHHHHHHHhh-------
Confidence 344444444332223457889999999999999999984 333223455553 44555544433321
Q ss_pred ccCCHHHHHHHHHHHhccCcEEEEEcCCCC-ChHHHHH--HhhhcCC-CCCCcEEEEEecc
Q 010117 255 IGEDYQLKKSILQDYLTAKKYFIVLDDVFD-DSEIWHD--LVEFLPD-NQNGSRVLITLLW 311 (518)
Q Consensus 255 ~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~-~~~~~~~--l~~~l~~-~~~gskIivTTR~ 311 (518)
...+.+. +.+.+. +.=|||+||+.. ....|.. +...+.. -...-.+||||..
T Consensus 149 ~~~~~~~----~l~~l~-~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 149 SETSEEQ----LLNDLS-NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred ccccHHH----HHHHhc-cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 1112222 223344 344888899966 2344442 2222221 1113347777764
No 79
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.87 E-value=0.0043 Score=59.02 Aligned_cols=98 Identities=12% Similarity=0.050 Sum_probs=56.3
Q ss_pred HHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhh-cCCCCC-CCccccCCH
Q 010117 182 LLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINP-VMPPSR-VSVIIGEDY 259 (518)
Q Consensus 182 ~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~-l~~~~~-~~~~~~~~~ 259 (518)
+|..+=..-.++.|+|.+|+|||++|.++... ....-..++|++.- .++...+. ++... ...... .......+.
T Consensus 15 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~ 90 (225)
T PRK09361 15 LLGGGFERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSF 90 (225)
T ss_pred HhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCH
Confidence 33334344679999999999999999998863 32334568899887 66655543 23222 000000 000012223
Q ss_pred HH---HHHHHHHHhccCcEEEEEcCCC
Q 010117 260 QL---KKSILQDYLTAKKYFIVLDDVF 283 (518)
Q Consensus 260 ~~---~~~~l~~~L~~kr~LlVLDdvw 283 (518)
.+ ....+...+..+--++|+|.+-
T Consensus 91 ~~~~~~i~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 91 EEQSEAIRKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred HHHHHHHHHHHHHHHhcccEEEEeCcH
Confidence 22 3344444554667799999984
No 80
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.87 E-value=0.004 Score=62.51 Aligned_cols=53 Identities=6% Similarity=-0.106 Sum_probs=33.1
Q ss_pred hhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEc
Q 010117 174 RGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRV 228 (518)
Q Consensus 174 ~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~v 228 (518)
...+...+++..-+....-+.++|..|+|||+||..+.+. +...-..++++++
T Consensus 167 ~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~ 219 (329)
T PRK06835 167 KILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTA 219 (329)
T ss_pred HHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEH
Confidence 3444444444421112367999999999999999999983 3332234566644
No 81
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.87 E-value=0.0089 Score=63.13 Aligned_cols=41 Identities=10% Similarity=0.022 Sum_probs=28.8
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.+...+.|...+..+. -...+-++|+.|+||||+|+.+.+.
T Consensus 19 q~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~ 59 (472)
T PRK14962 19 QDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKS 59 (472)
T ss_pred cHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3444555555555442 2356789999999999999999873
No 82
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.85 E-value=0.0035 Score=65.78 Aligned_cols=100 Identities=16% Similarity=0.190 Sum_probs=56.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCccccc-c-eEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYF-D-CHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQ 267 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F-~-~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 267 (518)
..-+.|+|..|+|||+|++.+.+ .+.+.. . .++|++. .++..++...+... ..+ .+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~---------~~~----~f~ 188 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDLVDSMKEG---------KLN----EFR 188 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc---------cHH----HHH
Confidence 45699999999999999999999 444433 2 3455543 45566665555322 111 233
Q ss_pred HHhccCcEEEEEcCCCC--ChHHH-HHHhhhcCC-CCCCcEEEEEec
Q 010117 268 DYLTAKKYFIVLDDVFD--DSEIW-HDLVEFLPD-NQNGSRVLITLL 310 (518)
Q Consensus 268 ~~L~~kr~LlVLDdvw~--~~~~~-~~l~~~l~~-~~~gskIivTTR 310 (518)
+.+..+.-+|++||+.. +...+ ..+...+.. ...|..||+||.
T Consensus 189 ~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd 235 (440)
T PRK14088 189 EKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_pred HHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECC
Confidence 33333455899999975 11111 122222210 112456888875
No 83
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.85 E-value=0.0046 Score=56.36 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=28.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEE
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWV 226 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv 226 (518)
+..+|.|+|+.|+||||+|+.+++ .....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 456999999999999999999998 555555555555
No 84
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.83 E-value=0.011 Score=53.89 Aligned_cols=120 Identities=8% Similarity=-0.014 Sum_probs=61.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCc----------cccCC-H
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSV----------IIGED-Y 259 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~----------~~~~~-~ 259 (518)
.+++|+|..|.|||||++.+..-... -...+++.-. ++......+-..++.-..... +...+ -
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G 102 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKP---QQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGG 102 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCC---CCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHH
Confidence 58999999999999999999874221 1222222110 111110011111100000000 01112 2
Q ss_pred HHHHHHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCCCCCCcEEEEEecchhhhh
Q 010117 260 QLKKSILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPDNQNGSRVLITLLWFELQK 316 (518)
Q Consensus 260 ~~~~~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~~~gskIivTTR~~~va~ 316 (518)
+...-.+...+-.+.=+++||+... |....+.+...+..-..+..||++|.+.....
T Consensus 103 ~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 103 ERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 2233345666667788999999876 44444444433332223677888888876554
No 85
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.83 E-value=0.0047 Score=57.99 Aligned_cols=97 Identities=11% Similarity=-0.017 Sum_probs=56.8
Q ss_pred HhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhc-CCCCCC-CccccCC--
Q 010117 183 LIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPV-MPPSRV-SVIIGED-- 258 (518)
Q Consensus 183 L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l-~~~~~~-~~~~~~~-- 258 (518)
|..+=..-+++-|+|.+|+|||+++.++... ....-..++|++... ++..++.+. .+.. ...... ......+
T Consensus 5 l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~~-~~~~~~~~~~~i~~~~~~~~~ 80 (209)
T TIGR02237 5 LGGGVERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQI-AEDRPERALSNFIVFEVFDFD 80 (209)
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHHH-HHhChHHHhcCEEEEECCCHH
Confidence 3333345689999999999999999988763 333346789998875 666655543 2221 000000 0001112
Q ss_pred -HHHHHHHHHHHhcc-CcEEEEEcCCC
Q 010117 259 -YQLKKSILQDYLTA-KKYFIVLDDVF 283 (518)
Q Consensus 259 -~~~~~~~l~~~L~~-kr~LlVLDdvw 283 (518)
.......+.+.+.. +.-+||+|.+-
T Consensus 81 ~~~~~~~~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 81 EQGVAIQKTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHHHHHHHHhhcCccEEEEeCcH
Confidence 22335555555544 45589999985
No 86
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.82 E-value=0.019 Score=61.60 Aligned_cols=40 Identities=15% Similarity=0.003 Sum_probs=29.1
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
-+..++.+.+++..+. -...+.++|+.|+||||+|+.+.+
T Consensus 21 q~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk 60 (527)
T PRK14969 21 QEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAK 60 (527)
T ss_pred cHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHH
Confidence 3455556666666542 234568899999999999999876
No 87
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.79 E-value=0.0094 Score=52.88 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=29.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCC
Q 010117 192 VVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYD 233 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~ 233 (518)
++.|+|.+|+||||++..+... ....-..++|+.....+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 4689999999999999999773 333335577887766544
No 88
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.76 E-value=0.0017 Score=56.71 Aligned_cols=87 Identities=14% Similarity=0.101 Sum_probs=49.8
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHHhcc
Q 010117 193 VAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDYLTA 272 (518)
Q Consensus 193 i~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~ 272 (518)
|.++|..|+|||+||+.+.. ..... ..-+.++...+..+++...--. ..... ..... +...+ .
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~~~~---~~~i~~~~~~~~~dl~g~~~~~-~~~~~---~~~~~---l~~a~-----~ 64 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LLGRP---VIRINCSSDTTEEDLIGSYDPS-NGQFE---FKDGP---LVRAM-----R 64 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HHTCE---EEEEE-TTTSTHHHHHCEEET--TTTTC---EEE-C---CCTTH-----H
T ss_pred EEEECCCCCCHHHHHHHHHH--Hhhcc---eEEEEeccccccccceeeeeec-ccccc---ccccc---ccccc-----c
Confidence 67899999999999999987 33222 2346777877877766433222 11100 00000 00000 1
Q ss_pred CcEEEEEcCCCC-ChHHHHHHhhhc
Q 010117 273 KKYFIVLDDVFD-DSEIWHDLVEFL 296 (518)
Q Consensus 273 kr~LlVLDdvw~-~~~~~~~l~~~l 296 (518)
+..++|||++.. .+..+..+...+
T Consensus 65 ~~~il~lDEin~a~~~v~~~L~~ll 89 (139)
T PF07728_consen 65 KGGILVLDEINRAPPEVLESLLSLL 89 (139)
T ss_dssp EEEEEEESSCGG--HHHHHTTHHHH
T ss_pred ceeEEEECCcccCCHHHHHHHHHHH
Confidence 788999999985 356666665444
No 89
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.75 E-value=0.00085 Score=61.33 Aligned_cols=73 Identities=16% Similarity=0.145 Sum_probs=41.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDY 269 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 269 (518)
-.-+.++|..|+|||.||..+.+. ....=..+.|++ ..+++..+-..- .....+.. + +.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~--~~~~g~~v~f~~------~~~L~~~l~~~~---------~~~~~~~~---~-~~ 105 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANE--AIRKGYSVLFIT------ASDLLDELKQSR---------SDGSYEEL---L-KR 105 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEE------HHHHHHHHHCCH---------CCTTHCHH---H-HH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHH--hccCCcceeEee------cCceeccccccc---------cccchhhh---c-Cc
Confidence 356999999999999999999873 222222355563 455665554321 11112222 2 22
Q ss_pred hccCcEEEEEcCCCC
Q 010117 270 LTAKKYFIVLDDVFD 284 (518)
Q Consensus 270 L~~kr~LlVLDdvw~ 284 (518)
+. +-=||||||+..
T Consensus 106 l~-~~dlLilDDlG~ 119 (178)
T PF01695_consen 106 LK-RVDLLILDDLGY 119 (178)
T ss_dssp HH-TSSCEEEETCTS
T ss_pred cc-cccEecccccce
Confidence 32 234788999976
No 90
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.75 E-value=0.0048 Score=64.26 Aligned_cols=100 Identities=14% Similarity=0.167 Sum_probs=54.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccc--eEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFD--CHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQ 267 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~--~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 267 (518)
...+.|+|..|+|||+|++.+++ .+.+... .+++++ ..++...+...+... ..+ .+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~--~l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~---------~~~----~~~ 194 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGN--EILENNPNAKVVYVS------SEKFTNDFVNALRNN---------KME----EFK 194 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHHHhCCCCcEEEEE------HHHHHHHHHHHHHcC---------CHH----HHH
Confidence 45688999999999999999998 4443332 245553 334444454444321 112 223
Q ss_pred HHhccCcEEEEEcCCCC--ChHHH-HHHhhhcCC-CCCCcEEEEEecc
Q 010117 268 DYLTAKKYFIVLDDVFD--DSEIW-HDLVEFLPD-NQNGSRVLITLLW 311 (518)
Q Consensus 268 ~~L~~kr~LlVLDdvw~--~~~~~-~~l~~~l~~-~~~gskIivTTR~ 311 (518)
+.+.+ .-+|+|||+.. ....+ +.+...+.. ...|..+|+||..
T Consensus 195 ~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~ 241 (405)
T TIGR00362 195 EKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDR 241 (405)
T ss_pred HHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCC
Confidence 33332 23889999975 11111 222222211 1135568888763
No 91
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.74 E-value=0.014 Score=53.24 Aligned_cols=119 Identities=11% Similarity=0.071 Sum_probs=66.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCC-Cc--cc---ccc--eEEEEEcCCCCCHHHHHHHHHhhcCCCCC--CCccccCCH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNN-HV--KF---YFD--CHAWVRVSIAYDFGKILDDIINPVMPPSR--VSVIIGEDY 259 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~-~~--~~---~F~--~~~wv~vs~~~~~~~i~~~i~~~l~~~~~--~~~~~~~~~ 259 (518)
-.+++|+|+.|+|||||.+.+..+. ++ .. .|. ...|+ .+ .+.+..++.... ...+...+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 3689999999999999999986421 11 11 111 12232 22 345555554321 111122222
Q ss_pred HH-HHHHHHHHhccC--cEEEEEcCCCC--ChHHHHHHhhhcCC-CCCCcEEEEEecchhhhhhc
Q 010117 260 QL-KKSILQDYLTAK--KYFIVLDDVFD--DSEIWHDLVEFLPD-NQNGSRVLITLLWFELQKGE 318 (518)
Q Consensus 260 ~~-~~~~l~~~L~~k--r~LlVLDdvw~--~~~~~~~l~~~l~~-~~~gskIivTTR~~~va~~~ 318 (518)
.+ ..-.+...+..+ .=+++||+--. +......+...+.. ...|..||++|.+...+..+
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~ 155 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSA 155 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhC
Confidence 22 233455556566 67888899765 45555555544432 12467799999887765433
No 92
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.74 E-value=0.021 Score=58.07 Aligned_cols=102 Identities=13% Similarity=0.109 Sum_probs=53.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCC--HHHHHHHHHhhcCCCCCCCccccCCHHHHHHHH
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYD--FGKILDDIINPVMPPSRVSVIIGEDYQLKKSIL 266 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~--~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 266 (518)
+.++|+++|++|+||||++..+... ....=..+..++.. ++. ..+-++...+.++.+.. ...+...+...+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~--L~~~GkkVglI~aD-t~RiaAvEQLk~yae~lgipv~----v~~d~~~L~~aL 312 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTD-HSRIGTVQQLQDYVKTIGFEVI----AVRDEAAMTRAL 312 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH--HHHcCCcEEEEecC-CcchHHHHHHHHHhhhcCCcEE----ecCCHHHHHHHH
Confidence 4579999999999999999888762 22111123344432 232 22233333334443322 233555555555
Q ss_pred HHHhcc-CcEEEEEcCCCC---ChHHHHHHhhhcC
Q 010117 267 QDYLTA-KKYFIVLDDVFD---DSEIWHDLVEFLP 297 (518)
Q Consensus 267 ~~~L~~-kr~LlVLDdvw~---~~~~~~~l~~~l~ 297 (518)
...-.. +.=+|++|-.-. +......+...+.
T Consensus 313 ~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk 347 (436)
T PRK11889 313 TYFKEEARVDYILIDTAGKNYRASETVEEMIETMG 347 (436)
T ss_pred HHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHh
Confidence 444321 233667777654 2344555554443
No 93
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.72 E-value=0.0093 Score=62.38 Aligned_cols=139 Identities=12% Similarity=0.030 Sum_probs=67.5
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRV 251 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~ 251 (518)
-+..+..|..++..+. -...+.++|+.|+||||+|+.+.+. +...-... ........+...+...+...+..-...
T Consensus 23 Qe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~--Lnce~~~~-~~pCg~C~sC~~i~~g~~~dviEIdaa 98 (484)
T PRK14956 23 QDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKR--LNCENPIG-NEPCNECTSCLEITKGISSDVLEIDAA 98 (484)
T ss_pred hHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHh--cCcccccC-ccccCCCcHHHHHHccCCccceeechh
Confidence 4445566677666553 2245789999999999999999873 22210000 000011111111111110000000000
Q ss_pred CccccCCHHHHHHHHHHH-hccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEE-EEecchhh
Q 010117 252 SVIIGEDYQLKKSILQDY-LTAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVL-ITLLWFEL 314 (518)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIi-vTTR~~~v 314 (518)
......+..++.+.+... ..++.-++|+|++.. ....++.+...+........+| .||....+
T Consensus 99 s~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI 164 (484)
T PRK14956 99 SNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKI 164 (484)
T ss_pred hcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhc
Confidence 000111222333333222 235666999999987 5778888877775443445544 45544444
No 94
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.72 E-value=0.0012 Score=56.03 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 010117 192 VVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~ 212 (518)
||.|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 95
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.72 E-value=0.00083 Score=35.80 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=11.9
Q ss_pred cceeEEEecCCCCCcCC
Q 010117 500 KHLRVLNMGFAVLDNIH 516 (518)
Q Consensus 500 ~~LrVLdL~~~~i~~LP 516 (518)
.+||+|||++|+|++||
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47999999999999998
No 96
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.70 E-value=0.017 Score=52.89 Aligned_cols=121 Identities=13% Similarity=0.113 Sum_probs=68.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEE---cCCCCCHHHHH------HHHHhhcCCCCCC-CccccCC-H
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVR---VSIAYDFGKIL------DDIINPVMPPSRV-SVIIGED-Y 259 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~---vs~~~~~~~i~------~~i~~~l~~~~~~-~~~~~~~-~ 259 (518)
.+++|+|..|.|||||.+.+.... ......+++. +. ..+..... -++++.++..... ..+...+ -
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 589999999999999999998732 1233334332 22 11222221 1244444433210 1112222 2
Q ss_pred HHHHHHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCCC-CC-CcEEEEEecchhhh
Q 010117 260 QLKKSILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPDN-QN-GSRVLITLLWFELQ 315 (518)
Q Consensus 260 ~~~~~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~-~~-gskIivTTR~~~va 315 (518)
+...-.+...+....-+++||+--. |......+...+..- .. |..||++|.+....
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 3333456666777888999999876 455555555544321 12 66788888876554
No 97
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.70 E-value=0.005 Score=57.34 Aligned_cols=110 Identities=17% Similarity=0.141 Sum_probs=63.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHH---HHHhhcCCCCCCCccccCCHHHHHHHHH
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILD---DIINPVMPPSRVSVIIGEDYQLKKSILQ 267 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~---~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 267 (518)
.+|.|+|+.|.||||++..+.. .+.......+++-- .+... ... .++.+-. ...+.......++
T Consensus 2 GlilI~GptGSGKTTll~~ll~--~~~~~~~~~i~t~e-~~~E~--~~~~~~~~i~q~~--------vg~~~~~~~~~i~ 68 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID--YINKNKTHHILTIE-DPIEF--VHESKRSLINQRE--------VGLDTLSFENALK 68 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HhhhcCCcEEEEEc-CCccc--cccCccceeeecc--------cCCCccCHHHHHH
Confidence 3789999999999999998776 33333333444322 22110 000 0111100 0112233456677
Q ss_pred HHhccCcEEEEEcCCCCChHHHHHHhhhcCCCCCCcEEEEEecchhhhhh
Q 010117 268 DYLTAKKYFIVLDDVFDDSEIWHDLVEFLPDNQNGSRVLITLLWFELQKG 317 (518)
Q Consensus 268 ~~L~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~va~~ 317 (518)
..+....=.|++|.+.+ .+.+..+.... ..|..++.|+...+++..
T Consensus 69 ~aLr~~pd~ii~gEird-~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~~ 114 (198)
T cd01131 69 AALRQDPDVILVGEMRD-LETIRLALTAA---ETGHLVMSTLHTNSAAKT 114 (198)
T ss_pred HHhcCCcCEEEEcCCCC-HHHHHHHHHHH---HcCCEEEEEecCCcHHHH
Confidence 77776677999999988 66655544432 235668888887766543
No 98
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.70 E-value=0.0097 Score=55.34 Aligned_cols=129 Identities=16% Similarity=0.146 Sum_probs=61.0
Q ss_pred hhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCC------C---CHHH----HHH
Q 010117 173 ERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIA------Y---DFGK----ILD 239 (518)
Q Consensus 173 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~------~---~~~~----i~~ 239 (518)
.......++.|.. ..++.+.|++|.|||.||....-+.-..+.|+..+++.-.-+ | +..+ .+.
T Consensus 6 ~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~ 81 (205)
T PF02562_consen 6 NEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLR 81 (205)
T ss_dssp SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTH
T ss_pred CHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHH
Confidence 3445566677763 469999999999999999887765333467777666632211 0 1000 011
Q ss_pred HHHhhcCCCCCCCccccCCHHHHHHH------HHHHhccC---cEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEEe
Q 010117 240 DIINPVMPPSRVSVIIGEDYQLKKSI------LQDYLTAK---KYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLITL 309 (518)
Q Consensus 240 ~i~~~l~~~~~~~~~~~~~~~~~~~~------l~~~L~~k---r~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTT 309 (518)
.+...+..-. .....+.+.+. --.+++|+ ..+||+|++.+ .+.++..+.. ..+.|||||++=
T Consensus 82 p~~d~l~~~~-----~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilT---R~g~~skii~~G 153 (205)
T PF02562_consen 82 PIYDALEELF-----GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILT---RIGEGSKIIITG 153 (205)
T ss_dssp HHHHHHTTTS------TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHT---TB-TT-EEEEEE
T ss_pred HHHHHHHHHh-----ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHc---ccCCCcEEEEec
Confidence 1111111110 11122222211 01234553 56999999987 3556655544 445699999985
Q ss_pred cchh
Q 010117 310 LWFE 313 (518)
Q Consensus 310 R~~~ 313 (518)
-..+
T Consensus 154 D~~Q 157 (205)
T PF02562_consen 154 DPSQ 157 (205)
T ss_dssp ----
T ss_pred Ccee
Confidence 4433
No 99
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.69 E-value=0.018 Score=62.48 Aligned_cols=134 Identities=8% Similarity=0.010 Sum_probs=65.7
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCccccc--ceEEEEEcCCCCCHHHHHHHHHhhcCCCC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYF--DCHAWVRVSIAYDFGKILDDIINPVMPPS 249 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F--~~~~wv~vs~~~~~~~i~~~i~~~l~~~~ 249 (518)
-+..++.|.+++..+. -...+-++|..|+||||+|+.+.+.-...... .... +.++..-..-+.|...-....
T Consensus 21 Qe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~----~~pCg~C~~C~~i~~g~h~D~ 95 (618)
T PRK14951 21 QEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT----ATPCGVCQACRDIDSGRFVDY 95 (618)
T ss_pred cHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC----CCCCCccHHHHHHHcCCCCce
Confidence 3455566677666552 34567899999999999999886521110000 0000 011111111222211000000
Q ss_pred CCCc-cccCCHHHHHHHHHHH----hccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEEec
Q 010117 250 RVSV-IIGEDYQLKKSILQDY----LTAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLITLL 310 (518)
Q Consensus 250 ~~~~-~~~~~~~~~~~~l~~~----L~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR 310 (518)
..-+ ......+++.+.+... ..++.-++|+|+|.. ....++.+...+..-....++|++|.
T Consensus 96 ~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Tt 162 (618)
T PRK14951 96 TELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATT 162 (618)
T ss_pred eecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEEC
Confidence 0000 0112233333322221 123455899999987 56778888887765545666665553
No 100
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.69 E-value=0.018 Score=59.39 Aligned_cols=41 Identities=12% Similarity=-0.117 Sum_probs=28.9
Q ss_pred hhhhHHHHHHHHhcCCC--------CceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEGPP--------RLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~--------~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
-+..++.|.+.+..+.. -..-+-++|+.|+||||+|..+.+
T Consensus 10 q~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~ 58 (394)
T PRK07940 10 QEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAA 58 (394)
T ss_pred hHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 34455566666655421 245688999999999999998865
No 101
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.68 E-value=0.02 Score=59.47 Aligned_cols=136 Identities=10% Similarity=-0.003 Sum_probs=66.4
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEE-cCCCCCHHHHHHHHHhhcCCCCC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVR-VSIAYDFGKILDDIINPVMPPSR 250 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~-vs~~~~~~~i~~~i~~~l~~~~~ 250 (518)
-+..++.|.+++..+. -...+-++|+.|+||||+|..+.+.-.-....+...|.. +..++..-..-+.+.........
T Consensus 21 q~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~ 99 (397)
T PRK14955 21 QEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNIS 99 (397)
T ss_pred hHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeE
Confidence 3455556666665542 234578899999999999998876321111111111110 01111111111122111100000
Q ss_pred CCcc-ccCCHHHHHHHHHHHh-----ccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEEe
Q 010117 251 VSVI-IGEDYQLKKSILQDYL-----TAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLITL 309 (518)
Q Consensus 251 ~~~~-~~~~~~~~~~~l~~~L-----~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTT 309 (518)
.-.. .....+++.+ +.+.+ .+++-++|+|++.. ....++.+...+......+.+|++|
T Consensus 100 ~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t 164 (397)
T PRK14955 100 EFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFAT 164 (397)
T ss_pred eecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 0000 1112333333 22333 34566889999876 3567888888877655566666555
No 102
>CHL00181 cbbX CbbX; Provisional
Probab=96.68 E-value=0.0078 Score=59.45 Aligned_cols=22 Identities=18% Similarity=0.113 Sum_probs=19.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
..+.++|.+|+||||+|+.+++
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3478899999999999999976
No 103
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.67 E-value=0.0074 Score=60.10 Aligned_cols=117 Identities=12% Similarity=0.134 Sum_probs=64.6
Q ss_pred hhhhHHHHHHHHhcCC--CCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCC
Q 010117 172 FERGREELFDLLIEGP--PRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPS 249 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~--~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~ 249 (518)
+....+...+++..-. ...+-+-++|..|+|||.||..+.+. ....=..+.+++++ +++..+-......
T Consensus 136 ~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~--l~~~g~~v~~~~~~------~l~~~lk~~~~~~- 206 (306)
T PRK08939 136 RLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANE--LAKKGVSSTLLHFP------EFIRELKNSISDG- 206 (306)
T ss_pred HHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEEHH------HHHHHHHHHHhcC-
Confidence 3344444555554321 23467899999999999999999994 33322235566543 4555554433211
Q ss_pred CCCccccCCHHHHHHHHHHHhccCcEEEEEcCCCC-ChHHHHH--Hhhhc-CCC-CCCcEEEEEec
Q 010117 250 RVSVIIGEDYQLKKSILQDYLTAKKYFIVLDDVFD-DSEIWHD--LVEFL-PDN-QNGSRVLITLL 310 (518)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~-~~~~~~~--l~~~l-~~~-~~gskIivTTR 310 (518)
+. ...+.. +. +-=||||||+.. ....|.. +...+ ... ..+-.+|+||.
T Consensus 207 --------~~---~~~l~~-l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 207 --------SV---KEKIDA-VK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred --------cH---HHHHHH-hc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 11 122222 22 455899999975 2445643 43333 211 23456888886
No 104
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.66 E-value=0.004 Score=65.75 Aligned_cols=87 Identities=11% Similarity=0.075 Sum_probs=49.1
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccc--eEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCc
Q 010117 176 REELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFD--CHAWVRVSIAYDFGKILDDIINPVMPPSRVSV 253 (518)
Q Consensus 176 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~--~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~ 253 (518)
...+..+....+....-+.|+|..|+|||+|++.+.+ ++...+. .+++++. .++...+...+...
T Consensus 134 ~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~----- 200 (450)
T PRK00149 134 HAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVTS------EKFTNDFVNALRNN----- 200 (450)
T ss_pred HHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHHHHHcC-----
Confidence 3333333333233446689999999999999999999 5554442 2445533 33344444443211
Q ss_pred cccCCHHHHHHHHHHHhccCcEEEEEcCCCC
Q 010117 254 IIGEDYQLKKSILQDYLTAKKYFIVLDDVFD 284 (518)
Q Consensus 254 ~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~ 284 (518)
.. ..+.+.++ +.-+|||||+..
T Consensus 201 ----~~----~~~~~~~~-~~dlLiiDDi~~ 222 (450)
T PRK00149 201 ----TM----EEFKEKYR-SVDVLLIDDIQF 222 (450)
T ss_pred ----cH----HHHHHHHh-cCCEEEEehhhh
Confidence 11 22333333 234899999965
No 105
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.65 E-value=0.024 Score=51.08 Aligned_cols=115 Identities=17% Similarity=0.105 Sum_probs=63.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCc-ccc--cce---EEEEEcCCCCC--HHHHHHHHHhhcCCCCCCCccccCCHHHH
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHV-KFY--FDC---HAWVRVSIAYD--FGKILDDIINPVMPPSRVSVIIGEDYQLK 262 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~-~~~--F~~---~~wv~vs~~~~--~~~i~~~i~~~l~~~~~~~~~~~~~~~~~ 262 (518)
.+++|+|..|.|||||++.+..-... ... |+. ..+ +.+.+. ...+...+.-. ... .-..-+..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~--~~q~~~~~~~tv~~nl~~~---~~~----~LS~G~~~ 98 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF--LPQRPYLPLGTLREQLIYP---WDD----VLSGGEQQ 98 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEE--ECCCCccccccHHHHhhcc---CCC----CCCHHHHH
Confidence 58999999999999999999874221 111 111 112 233321 11333333211 111 22223333
Q ss_pred HHHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCCCCCCcEEEEEecchhhhh
Q 010117 263 KSILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPDNQNGSRVLITLLWFELQK 316 (518)
Q Consensus 263 ~~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~~~gskIivTTR~~~va~ 316 (518)
.-.+...+..+.=+++||+--. |......+...+... +..||++|.+.....
T Consensus 99 rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 99 RLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 4456666667777889998765 444444444444322 456888888876554
No 106
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.64 E-value=0.024 Score=53.42 Aligned_cols=126 Identities=15% Similarity=0.148 Sum_probs=73.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCccc-------------------ccc--eEEEEEcCCCCC----------------
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKF-------------------YFD--CHAWVRVSIAYD---------------- 233 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~-------------------~F~--~~~wv~vs~~~~---------------- 233 (518)
.+++|+|+.|+|||||...+.--.+-.. .|. .+-+| .|.|+
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfv--FQ~~nLl~~ltv~ENv~lpl~ 109 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFV--FQNFNLLPDLTVLENVELPLL 109 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEE--CccCCCCCCCCHHHHHHhHHH
Confidence 5899999999999999988864211110 111 11222 12221
Q ss_pred --------HHHHHHHHHhhcCCCCCC--Ccccc-CCHHHHHHHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC--
Q 010117 234 --------FGKILDDIINPVMPPSRV--SVIIG-EDYQLKKSILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD-- 298 (518)
Q Consensus 234 --------~~~i~~~i~~~l~~~~~~--~~~~~-~~~~~~~~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~-- 298 (518)
..+....+++.++..... ..|.. +.-++..-.+.+.|..+.-+|+.|+=-. |...-+.+...+..
T Consensus 110 ~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~ 189 (226)
T COG1136 110 IAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELN 189 (226)
T ss_pred HcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHH
Confidence 233345555555554221 11223 3334445568888888888999998533 33444444444432
Q ss_pred CCCCcEEEEEecchhhhhhc
Q 010117 299 NQNGSRVLITLLWFELQKGE 318 (518)
Q Consensus 299 ~~~gskIivTTR~~~va~~~ 318 (518)
...|..||+.|.+..+|..+
T Consensus 190 ~~~g~tii~VTHd~~lA~~~ 209 (226)
T COG1136 190 KERGKTIIMVTHDPELAKYA 209 (226)
T ss_pred HhcCCEEEEEcCCHHHHHhC
Confidence 23478899999999999977
No 107
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.64 E-value=0.0072 Score=59.65 Aligned_cols=101 Identities=14% Similarity=0.110 Sum_probs=51.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHHhc
Q 010117 192 VVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDYLT 271 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~ 271 (518)
-+.++|++|+||||+|+.+.+--.-.......-|+.++. .++. ..+.+.. .......+.+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l~----~~~~g~~---------~~~~~~~~~~a-- 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDLV----GQYIGHT---------APKTKEILKRA-- 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHHh----Hhhcccc---------hHHHHHHHHHc--
Confidence 578999999999999976665211111111123455542 1222 2221111 11222222222
Q ss_pred cCcEEEEEcCCCC----------ChHHHHHHhhhcCCCCCCcEEEEEecch
Q 010117 272 AKKYFIVLDDVFD----------DSEIWHDLVEFLPDNQNGSRVLITLLWF 312 (518)
Q Consensus 272 ~kr~LlVLDdvw~----------~~~~~~~l~~~l~~~~~gskIivTTR~~ 312 (518)
..-+|+||++.. ..+.++.+...+.....+.+||++|...
T Consensus 121 -~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~ 170 (284)
T TIGR02880 121 -MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKD 170 (284)
T ss_pred -cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcH
Confidence 336899999852 0334555666665554456677766543
No 108
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.63 E-value=0.0095 Score=51.99 Aligned_cols=21 Identities=10% Similarity=0.176 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 010117 192 VVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~ 212 (518)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999986
No 109
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.63 E-value=0.023 Score=58.77 Aligned_cols=42 Identities=14% Similarity=0.041 Sum_probs=32.1
Q ss_pred hhhhHHHHHHHHhcC-----------CCCceEEEEEcCCCccHHHHHHHHHcC
Q 010117 172 FERGREELFDLLIEG-----------PPRLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 172 r~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
+++.+++|.+.+... -...+-|.++|++|+|||++|+.+++.
T Consensus 136 l~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 136 LEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred cHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH
Confidence 777777777765321 134566899999999999999999983
No 110
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.61 E-value=0.0064 Score=58.99 Aligned_cols=95 Identities=16% Similarity=0.090 Sum_probs=57.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCccccc----ceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC--Cc---cccCCH
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVKFYF----DCHAWVRVSIAYDFGKILDDIINPVMPPSRV--SV---IIGEDY 259 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F----~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~--~~---~~~~~~ 259 (518)
.-.+.=|+|.+|+|||.|+.++.-...+.... ..++|++-...|+..++. +|++..+..... .. ....+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 34689999999999999998876543333222 348999999999988875 466654322110 00 022234
Q ss_pred HHHH---HHHHHHhcc-CcEEEEEcCCCC
Q 010117 260 QLKK---SILQDYLTA-KKYFIVLDDVFD 284 (518)
Q Consensus 260 ~~~~---~~l~~~L~~-kr~LlVLDdvw~ 284 (518)
+++. ..+...+.+ +=-|||+|.+-.
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSIaa 144 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSIAA 144 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSH
T ss_pred HHHHHHHHHHHhhccccceEEEEecchHH
Confidence 4443 334444433 445999999853
No 111
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.61 E-value=0.032 Score=56.94 Aligned_cols=40 Identities=15% Similarity=0.002 Sum_probs=31.3
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+..++.+.+.+..+. -...+-++|+.|+||||+|+.+..
T Consensus 19 ~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~ 58 (355)
T TIGR02397 19 QEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAK 58 (355)
T ss_pred cHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 5667778888776653 235678999999999999988875
No 112
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.61 E-value=0.013 Score=63.75 Aligned_cols=131 Identities=13% Similarity=0.013 Sum_probs=66.4
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCC----
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMP---- 247 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~---- 247 (518)
-+..++.|.+.+..+. -...+-++|..|+||||+|+.+.+. +... ..+ .+.++..-...+.|...-..
T Consensus 21 Qe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~--L~c~----~~~-~~~pCg~C~~C~~i~~g~~~D~ie 92 (647)
T PRK07994 21 QEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKG--LNCE----TGI-TATPCGECDNCREIEQGRFVDLIE 92 (647)
T ss_pred cHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHh--hhhc----cCC-CCCCCCCCHHHHHHHcCCCCCcee
Confidence 4455566666665542 2345789999999999999998873 2211 000 01111111222222211000
Q ss_pred -CCCCCccccCCHHHHHHHHHHH-hccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEEecc
Q 010117 248 -PSRVSVIIGEDYQLKKSILQDY-LTAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLITLLW 311 (518)
Q Consensus 248 -~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~ 311 (518)
... ......+..++...+... ..+++-++|+|++.. .....+.|...+-.-....++|++|.+
T Consensus 93 idaa-s~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~ 158 (647)
T PRK07994 93 IDAA-SRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 158 (647)
T ss_pred eccc-ccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCC
Confidence 000 000111222233322221 345677999999987 567788887777654445555554443
No 113
>PRK04296 thymidine kinase; Provisional
Probab=96.61 E-value=0.0058 Score=56.53 Aligned_cols=114 Identities=12% Similarity=-0.064 Sum_probs=63.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHHh
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDYL 270 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L 270 (518)
.++.|+|..|.||||+|..... +...+-..++.+ ...++.......+.+.++..... .......++...+.+ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~--k~~~d~~~~~~~i~~~lg~~~~~--~~~~~~~~~~~~~~~-~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVF--KPAIDDRYGEGKVVSRIGLSREA--IPVSSDTDIFELIEE-E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEE--eccccccccCCcEecCCCCcccc--eEeCChHHHHHHHHh-h
Confidence 4778999999999999988877 333332223333 12223333344556666543221 012334455555555 3
Q ss_pred ccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEEecchh
Q 010117 271 TAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLITLLWFE 313 (518)
Q Consensus 271 ~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~~ 313 (518)
.++.-+||+|.+.- +.++...+...+ ...|..||+|.++..
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 33445999999965 233233333332 234788999998744
No 114
>PRK06696 uridine kinase; Validated
Probab=96.61 E-value=0.0029 Score=60.18 Aligned_cols=41 Identities=22% Similarity=0.127 Sum_probs=33.4
Q ss_pred hhhhHHHHHHHHhc-CCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIE-GPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~-~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
|.+-+++|.+.+.. ......+|+|.|.+|+||||||+.+..
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 55667777777764 244678999999999999999999987
No 115
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.55 E-value=0.023 Score=49.94 Aligned_cols=102 Identities=11% Similarity=-0.033 Sum_probs=58.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHHh
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDYL 270 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L 270 (518)
.+++|+|..|.|||||++.+..... .....+|+.-. ..+.-- ++-..-+...-.+...+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~-------------~~i~~~-----~~lS~G~~~rv~laral 85 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGST-------------VKIGYF-----EQLSGGEKMRLALAKLL 85 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCe-------------EEEEEE-----ccCCHHHHHHHHHHHHH
Confidence 6899999999999999999987422 12333433210 000000 00111122333456666
Q ss_pred ccCcEEEEEcCCCC--ChHHHHHHhhhcCCCCCCcEEEEEecchhhh
Q 010117 271 TAKKYFIVLDDVFD--DSEIWHDLVEFLPDNQNGSRVLITLLWFELQ 315 (518)
Q Consensus 271 ~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~~~gskIivTTR~~~va 315 (518)
..+.-++++|+--. |......+...+... +..||++|.+...+
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~ 130 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFL 130 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHH
Confidence 66777899999866 455555555544432 24688888776554
No 116
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.55 E-value=0.0096 Score=67.55 Aligned_cols=129 Identities=11% Similarity=0.029 Sum_probs=65.0
Q ss_pred hhhhHHHHHHHHhc-------CCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhh
Q 010117 172 FERGREELFDLLIE-------GPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINP 244 (518)
Q Consensus 172 r~~~~~~l~~~L~~-------~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 244 (518)
.+..++.|.+.+.. +.....++.++|+.|+|||.||+.+... +-......+-+.+|.-.+. ..+..-
T Consensus 571 Q~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~----~~~~~l 644 (852)
T TIGR03345 571 QDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEA----HTVSRL 644 (852)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhh----hhhccc
Confidence 33445555555532 2234568899999999999999887652 2111111122222221111 111111
Q ss_pred cCCCCCCCccccCCHHHHHHHHHHHhccCcEEEEEcCCCC-ChHHHHHHhhhcCCCC-----------CCcEEEEEecc
Q 010117 245 VMPPSRVSVIIGEDYQLKKSILQDYLTAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQ-----------NGSRVLITLLW 311 (518)
Q Consensus 245 l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~-----------~gskIivTTR~ 311 (518)
++.+..- ........+...+++ ...-+|+||++.. ++..++.+...+..+. ..+-||+||..
T Consensus 645 ~g~~~gy--vg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNl 718 (852)
T TIGR03345 645 KGSPPGY--VGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNA 718 (852)
T ss_pred cCCCCCc--ccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCC
Confidence 2221110 011111223333332 3456999999977 6788888877665432 34556777653
No 117
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.53 E-value=0.018 Score=64.57 Aligned_cols=94 Identities=12% Similarity=0.140 Sum_probs=53.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDY 269 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 269 (518)
..++.++|+.|+|||+||+.+.. ... ...+.+..|.-.+... +...++..... ....... .+.+.
T Consensus 484 ~~~~lf~Gp~GvGKT~lA~~la~--~l~---~~~~~~d~se~~~~~~----~~~lig~~~gy--vg~~~~~----~l~~~ 548 (731)
T TIGR02639 484 VGSFLFTGPTGVGKTELAKQLAE--ALG---VHLERFDMSEYMEKHT----VSRLIGAPPGY--VGFEQGG----LLTEA 548 (731)
T ss_pred ceeEEEECCCCccHHHHHHHHHH--Hhc---CCeEEEeCchhhhccc----HHHHhcCCCCC--cccchhh----HHHHH
Confidence 45688999999999999999987 332 2334555444222111 11112221110 0111112 23334
Q ss_pred hccC-cEEEEEcCCCC-ChHHHHHHhhhcCC
Q 010117 270 LTAK-KYFIVLDDVFD-DSEIWHDLVEFLPD 298 (518)
Q Consensus 270 L~~k-r~LlVLDdvw~-~~~~~~~l~~~l~~ 298 (518)
++.+ .-+++||++.. .++.++.+...+..
T Consensus 549 ~~~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 549 VRKHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred HHhCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 4333 45999999987 67888888776653
No 118
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.50 E-value=0.017 Score=65.69 Aligned_cols=110 Identities=12% Similarity=0.116 Sum_probs=59.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDY 269 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 269 (518)
...+.++|+.|+|||+||+.+.+ .+-..-...+-+..+.-.+...+.+ -++.+.. -....... .+.+.
T Consensus 539 ~~~~lf~Gp~GvGKt~lA~~LA~--~l~~~~~~~~~~d~s~~~~~~~~~~----l~g~~~g--yvg~~~~~----~l~~~ 606 (821)
T CHL00095 539 IASFLFSGPTGVGKTELTKALAS--YFFGSEDAMIRLDMSEYMEKHTVSK----LIGSPPG--YVGYNEGG----QLTEA 606 (821)
T ss_pred ceEEEEECCCCCcHHHHHHHHHH--HhcCCccceEEEEchhccccccHHH----hcCCCCc--ccCcCccc----hHHHH
Confidence 45677899999999999998876 2211112223333333222111111 1121110 00111112 24445
Q ss_pred hccCc-EEEEEcCCCC-ChHHHHHHhhhcCCC-----------CCCcEEEEEecc
Q 010117 270 LTAKK-YFIVLDDVFD-DSEIWHDLVEFLPDN-----------QNGSRVLITLLW 311 (518)
Q Consensus 270 L~~kr-~LlVLDdvw~-~~~~~~~l~~~l~~~-----------~~gskIivTTR~ 311 (518)
++.++ -+++||++.. .++.++.+...+..+ ...+-||+||..
T Consensus 607 ~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~ 661 (821)
T CHL00095 607 VRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNL 661 (821)
T ss_pred HHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCc
Confidence 55554 5899999987 678888888776643 134556777664
No 119
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.49 E-value=0.018 Score=61.07 Aligned_cols=141 Identities=16% Similarity=0.158 Sum_probs=80.7
Q ss_pred hhhHHHHHHHHhcCCCCceEEEEEcCCCccHHH-HHHHHHcCCCcccccceEEEEEcCCCCC--HHHHHHHHHhhcCCCC
Q 010117 173 ERGREELFDLLIEGPPRLSVVAILDSSGFEMTA-FAADAFNNNHVKFYFDCHAWVRVSIAYD--FGKILDDIINPVMPPS 249 (518)
Q Consensus 173 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTt-LA~~v~~d~~~~~~F~~~~wv~vs~~~~--~~~i~~~i~~~l~~~~ 249 (518)
-.-+++|++.+.+. .||.|||..|.|||| |||.+|.+--... -.|.+.|+-- ...+.+.+.+..+..-
T Consensus 358 f~~R~~ll~~ir~n----~vvvivgETGSGKTTQl~QyL~edGY~~~-----GmIGcTQPRRvAAiSVAkrVa~EM~~~l 428 (1042)
T KOG0924|consen 358 FACRDQLLSVIREN----QVVVIVGETGSGKTTQLAQYLYEDGYADN-----GMIGCTQPRRVAAISVAKRVAEEMGVTL 428 (1042)
T ss_pred HHHHHHHHHHHhhC----cEEEEEecCCCCchhhhHHHHHhcccccC-----CeeeecCchHHHHHHHHHHHHHHhCCcc
Confidence 33466677766654 699999999999999 8999998632221 2344455533 3344555666554332
Q ss_pred CCC---------------ccc-cCCHHHHHHHHHHHhccCcEEEEEcCCCC---ChHHH-HHHhhhcCCCCCCcEEEEEe
Q 010117 250 RVS---------------VII-GEDYQLKKSILQDYLTAKKYFIVLDDVFD---DSEIW-HDLVEFLPDNQNGSRVLITL 309 (518)
Q Consensus 250 ~~~---------------~~~-~~~~~~~~~~l~~~L~~kr~LlVLDdvw~---~~~~~-~~l~~~l~~~~~gskIivTT 309 (518)
... .+. ..+.--+.+.|.+..-.|=-.||+|...+ +.+.. .-++..+. ....-|+|||+
T Consensus 429 G~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~la-rRrdlKliVtS 507 (1042)
T KOG0924|consen 429 GDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLA-RRRDLKLIVTS 507 (1042)
T ss_pred ccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHH-hhccceEEEee
Confidence 210 000 11222333444444444555899999876 22332 33333333 23367999998
Q ss_pred cch---hhhhhccCCCc
Q 010117 310 LWF---ELQKGEKIQPD 323 (518)
Q Consensus 310 R~~---~va~~~~~~Pl 323 (518)
-.. +.+..+|+||.
T Consensus 508 ATm~a~kf~nfFgn~p~ 524 (1042)
T KOG0924|consen 508 ATMDAQKFSNFFGNCPQ 524 (1042)
T ss_pred ccccHHHHHHHhCCCce
Confidence 764 45566688887
No 120
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.49 E-value=0.0081 Score=58.18 Aligned_cols=75 Identities=17% Similarity=0.116 Sum_probs=45.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHH
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQD 268 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 268 (518)
+..-+.++|.+|+|||.||..+.+.-- +..+. +.++ +..+++.++....... .....|.+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~s-v~f~------~~~el~~~Lk~~~~~~------------~~~~~l~~ 163 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGIS-VLFI------TAPDLLSKLKAAFDEG------------RLEEKLLR 163 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCe-EEEE------EHHHHHHHHHHHHhcC------------chHHHHHH
Confidence 456789999999999999999999432 22233 4444 4455565655444321 11222333
Q ss_pred HhccCcEEEEEcCCCC
Q 010117 269 YLTAKKYFIVLDDVFD 284 (518)
Q Consensus 269 ~L~~kr~LlVLDdvw~ 284 (518)
.+. +-=||||||+-.
T Consensus 164 ~l~-~~dlLIiDDlG~ 178 (254)
T COG1484 164 ELK-KVDLLIIDDIGY 178 (254)
T ss_pred Hhh-cCCEEEEecccC
Confidence 222 223899999976
No 121
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.48 E-value=0.031 Score=57.40 Aligned_cols=40 Identities=10% Similarity=0.007 Sum_probs=31.2
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+...+.+.+.+..+. -.+.+-++|+.|+||||+|..+.+
T Consensus 22 ~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~ 61 (367)
T PRK14970 22 QSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILAR 61 (367)
T ss_pred cHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4556677777776542 345788999999999999999877
No 122
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.47 E-value=0.0084 Score=63.08 Aligned_cols=103 Identities=12% Similarity=0.128 Sum_probs=57.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCcccccc--eEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHH
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVKFYFD--CHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSIL 266 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~--~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 266 (518)
...-+.|+|..|+|||+|++.+.+ .+..... .++++ +..++...+...+.... .....+
T Consensus 140 ~~npl~i~G~~G~GKTHLl~Ai~~--~l~~~~~~~~v~yv------~~~~f~~~~~~~l~~~~-----------~~~~~~ 200 (450)
T PRK14087 140 SYNPLFIYGESGMGKTHLLKAAKN--YIESNFSDLKVSYM------SGDEFARKAVDILQKTH-----------KEIEQF 200 (450)
T ss_pred ccCceEEECCCCCcHHHHHHHHHH--HHHHhCCCCeEEEE------EHHHHHHHHHHHHHHhh-----------hHHHHH
Confidence 345689999999999999999988 3332221 23333 34566666666554211 112233
Q ss_pred HHHhccCcEEEEEcCCCC-C-hHHH-HHHhhhcCC-CCCCcEEEEEecc
Q 010117 267 QDYLTAKKYFIVLDDVFD-D-SEIW-HDLVEFLPD-NQNGSRVLITLLW 311 (518)
Q Consensus 267 ~~~L~~kr~LlVLDdvw~-~-~~~~-~~l~~~l~~-~~~gskIivTTR~ 311 (518)
.+.+. +.-+||+||+.. . ...+ +.+...+.. ...|..||+|+..
T Consensus 201 ~~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~ 248 (450)
T PRK14087 201 KNEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDK 248 (450)
T ss_pred HHHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCC
Confidence 33333 334889999965 1 1222 333333321 1235578888763
No 123
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.47 E-value=0.033 Score=58.85 Aligned_cols=135 Identities=13% Similarity=0.018 Sum_probs=63.7
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRV 251 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~ 251 (518)
-+..++.+.+.+..+. -..-+-++|+.|+||||+|+.+.+ .+...+.. . ..++..-..-..|...-....-.
T Consensus 18 Qe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk--~LnC~~~~----~-~~pCg~C~~C~~i~~~~~~Dv~e 89 (491)
T PRK14964 18 QDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISL--CLNCSNGP----T-SDPCGTCHNCISIKNSNHPDVIE 89 (491)
T ss_pred cHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHH--HHcCcCCC----C-CCCccccHHHHHHhccCCCCEEE
Confidence 3444445555554442 234788999999999999998875 11110000 0 00111111111111110000000
Q ss_pred Cc-cccCCHHHHHHHHHHH----hccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEEe-cchhh
Q 010117 252 SV-IIGEDYQLKKSILQDY----LTAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLITL-LWFEL 314 (518)
Q Consensus 252 ~~-~~~~~~~~~~~~l~~~----L~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTT-R~~~v 314 (518)
-+ .+....+++...+... ..++.-++|+|++.. .....+.+...+..-...+++|++| ...++
T Consensus 90 idaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl 159 (491)
T PRK14964 90 IDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKI 159 (491)
T ss_pred EecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHH
Confidence 00 0111222222221111 134566899999976 4667788887777655566666555 33443
No 124
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.46 E-value=0.059 Score=48.37 Aligned_cols=117 Identities=15% Similarity=0.075 Sum_probs=65.6
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcC----CCcc--------------cccceEEEEEcCCC---CC
Q 010117 175 GREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNN----NHVK--------------FYFDCHAWVRVSIA---YD 233 (518)
Q Consensus 175 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d----~~~~--------------~~F~~~~wv~vs~~---~~ 233 (518)
..+.|.+.+..+ .-...+-++|..|+||+|+|..+.+. .... ....-..|+.-... ..
T Consensus 5 ~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~ 83 (162)
T PF13177_consen 5 IIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIK 83 (162)
T ss_dssp HHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBS
T ss_pred HHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhh
Confidence 344555555444 23456889999999999999877652 1110 11122333332222 22
Q ss_pred HHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHHhccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEEecch
Q 010117 234 FGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDYLTAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLITLLWF 312 (518)
Q Consensus 234 ~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~ 312 (518)
+.++. ++...+..... .++.=.+|+||+.. ....++.|+..+-.-..++.+|++|.+.
T Consensus 84 i~~ir-~i~~~~~~~~~--------------------~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 84 IDQIR-EIIEFLSLSPS--------------------EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp HHHHH-HHHHHCTSS-T--------------------TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred HHHHH-HHHHHHHHHHh--------------------cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 22221 33322222211 23566899999987 5788888888887666788888888875
Q ss_pred h
Q 010117 313 E 313 (518)
Q Consensus 313 ~ 313 (518)
+
T Consensus 143 ~ 143 (162)
T PF13177_consen 143 S 143 (162)
T ss_dssp G
T ss_pred H
Confidence 4
No 125
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.46 E-value=0.023 Score=55.45 Aligned_cols=134 Identities=17% Similarity=0.069 Sum_probs=72.0
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEE---cCCCCCHHHHHHHHHhhcCCCCCC
Q 010117 175 GREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVR---VSIAYDFGKILDDIINPVMPPSRV 251 (518)
Q Consensus 175 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~---vs~~~~~~~i~~~i~~~l~~~~~~ 251 (518)
..+.++..|... ...+-++|+|..|.|||||.+.+... +.. ....+++. |....+..++...+ ..+....-.
T Consensus 97 ~~~~~l~~l~~~-~~~~~~~i~g~~g~GKttl~~~l~~~--~~~-~~G~i~~~g~~v~~~d~~~ei~~~~-~~~~q~~~~ 171 (270)
T TIGR02858 97 AADKLLPYLVRN-NRVLNTLIISPPQCGKTTLLRDLARI--LST-GISQLGLRGKKVGIVDERSEIAGCV-NGVPQHDVG 171 (270)
T ss_pred cHHHHHHHHHhC-CCeeEEEEEcCCCCCHHHHHHHHhCc--cCC-CCceEEECCEEeecchhHHHHHHHh-ccccccccc
Confidence 444555555543 24678999999999999999999873 322 12233321 11100112222111 111111000
Q ss_pred CccccCCHHHHHHHHHHHhc-cCcEEEEEcCCCCChHHHHHHhhhcCCCCCCcEEEEEecchhhhhh
Q 010117 252 SVIIGEDYQLKKSILQDYLT-AKKYFIVLDDVFDDSEIWHDLVEFLPDNQNGSRVLITLLWFELQKG 317 (518)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~L~-~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~va~~ 317 (518)
...+..+.......+...+. ...=+|++|.+-. .+.+..+...+. .|..||+||.+..+...
T Consensus 172 ~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~-~e~~~~l~~~~~---~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 172 IRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGR-EEDVEALLEALH---AGVSIIATAHGRDVEDL 234 (270)
T ss_pred ccccccccchHHHHHHHHHHhCCCCEEEEeCCCc-HHHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence 00011111111223444443 4778999999988 777777766653 47789999998777554
No 126
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.023 Score=60.92 Aligned_cols=111 Identities=16% Similarity=0.221 Sum_probs=68.6
Q ss_pred chHHHHHHHHHHHHHhhccCCCCCCCCccCCc-----cccc-------ccccCCCCCCChhh--hhhhHHHHHHHHhc--
Q 010117 122 HLVELHSKIIDIRNRMEQLPPSDNDFDISERR-----DKLI-------HLLIEGQPRVDESE--FERGREELFDLLIE-- 185 (518)
Q Consensus 122 ~r~~~~~~i~~l~~~l~~i~~~~~~~~~~~~~-----~~~~-------~~~~~~~~~~~~~~--r~~~~~~l~~~L~~-- 185 (518)
....+-+.+.+=..+++.+......|++...- +-++ .+.....-..++.. .++.+++|++.+--
T Consensus 352 ~P~~v~kv~~eEl~kL~~le~~~sEfnvtrNYLdwlt~LPWgk~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~k 431 (906)
T KOG2004|consen 352 MPDHVLKVIDEELTKLKLLEPSSSEFNVTRNYLDWLTSLPWGKSSTENLDLARAKEILDEDHYGMEDVKERILEFIAVGK 431 (906)
T ss_pred CcHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhCCCCCCChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHHh
Confidence 33445566666667777787777788765311 0000 00000011112222 78889999988853
Q ss_pred --CCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHH
Q 010117 186 --GPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKI 237 (518)
Q Consensus 186 --~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i 237 (518)
+..+-++++.+|++|||||.+|+.+.. .....| +-++|+.-.|+.+|
T Consensus 432 Lrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF---fRfSvGG~tDvAeI 480 (906)
T KOG2004|consen 432 LRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF---FRFSVGGMTDVAEI 480 (906)
T ss_pred hcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce---EEEeccccccHHhh
Confidence 345668999999999999999999998 555555 23566666665544
No 127
>PRK07667 uridine kinase; Provisional
Probab=96.46 E-value=0.0041 Score=57.71 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 176 REELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 176 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+.|.+.+........+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4667777776666678999999999999999999887
No 128
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.45 E-value=0.0075 Score=63.27 Aligned_cols=73 Identities=8% Similarity=0.140 Sum_probs=43.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDY 269 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 269 (518)
..-+.|+|..|+|||+|++.+.+ .+...-..+++++ ...+...+...+... . ...++..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~--~l~~~~~~v~yi~------~~~f~~~~~~~l~~~---------~----~~~f~~~ 199 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVH--ALRESGGKILYVR------SELFTEHLVSAIRSG---------E----MQRFRQF 199 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHH--HHHHcCCCEEEee------HHHHHHHHHHHHhcc---------h----HHHHHHH
Confidence 45688999999999999999998 4433222344443 334444444444321 1 1223333
Q ss_pred hccCcEEEEEcCCCC
Q 010117 270 LTAKKYFIVLDDVFD 284 (518)
Q Consensus 270 L~~kr~LlVLDdvw~ 284 (518)
+. +.-+|++||+..
T Consensus 200 ~~-~~dvLiIDDiq~ 213 (445)
T PRK12422 200 YR-NVDALFIEDIEV 213 (445)
T ss_pred cc-cCCEEEEcchhh
Confidence 33 334888899865
No 129
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.44 E-value=0.0074 Score=57.48 Aligned_cols=25 Identities=4% Similarity=-0.000 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
....+.|+|..|+|||+||+.+++.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3467889999999999999999984
No 130
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.44 E-value=0.014 Score=52.57 Aligned_cols=113 Identities=10% Similarity=-0.043 Sum_probs=63.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCC--CCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHH
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSI--AYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQD 268 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~--~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 268 (518)
.+++|+|..|.|||||.+.+..-. ......+++.-.. ..+..+..+ ..++.- ++-..-+...-.+..
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~-----~qLS~G~~qrl~lar 95 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAMV-----YQLSVGERQMVEIAR 95 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEEE-----EecCHHHHHHHHHHH
Confidence 589999999999999999998732 2233444442111 111111111 111110 011222333445666
Q ss_pred HhccCcEEEEEcCCCC--ChHHHHHHhhhcCC-CCCCcEEEEEecchhh
Q 010117 269 YLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD-NQNGSRVLITLLWFEL 314 (518)
Q Consensus 269 ~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~-~~~gskIivTTR~~~v 314 (518)
.+-.+.-+++||+--. |......+...+.. ...|..||++|.+...
T Consensus 96 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 96 ALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred HHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 6777788899999876 45555555444432 1236678888888653
No 131
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.41 E-value=0.027 Score=51.39 Aligned_cols=101 Identities=12% Similarity=0.021 Sum_probs=58.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEE------cCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHH
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVR------VSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKS 264 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~------vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~ 264 (518)
.+++|+|..|.|||||.+.+..-.. .....+++. +.+... -..-+...-
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~q~~~----------------------LSgGq~qrv 80 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGITPVYKPQYID----------------------LSGGELQRV 80 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEEEEEEcccCC----------------------CCHHHHHHH
Confidence 5899999999999999999987321 122222221 111111 111223334
Q ss_pred HHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC--CCCCcEEEEEecchhhhh
Q 010117 265 ILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD--NQNGSRVLITLLWFELQK 316 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~--~~~gskIivTTR~~~va~ 316 (518)
.+...+..+.-+++||+--. |......+...+.. ...+..||++|.+.....
T Consensus 81 ~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 81 AIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 56666667778999999765 44444444443331 112356888887765444
No 132
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.096 Score=56.56 Aligned_cols=97 Identities=14% Similarity=0.166 Sum_probs=59.1
Q ss_pred hhhhHHHHHHHHhc----CCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCC
Q 010117 172 FERGREELFDLLIE----GPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMP 247 (518)
Q Consensus 172 r~~~~~~l~~~L~~----~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 247 (518)
.++.+++|++.|-- ..-+-++++.||++|+|||.|++.+.. .....| +-++++.--|..+|- +
T Consensus 328 LekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDEAEIR--------G 394 (782)
T COG0466 328 LEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDEAEIR--------G 394 (782)
T ss_pred chhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE---EEEecCccccHHHhc--------c
Confidence 77889999988843 233447999999999999999999998 666666 234444444443321 1
Q ss_pred CCCCCccccCCHHHHHHHHHHHhccCcEEEEEcCCCC
Q 010117 248 PSRVSVIIGEDYQLKKSILQDYLTAKKYFIVLDDVFD 284 (518)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~ 284 (518)
... ..-..=+..+.+.+++. ..+.=+++||.+..
T Consensus 395 HRR--TYIGamPGrIiQ~mkka-~~~NPv~LLDEIDK 428 (782)
T COG0466 395 HRR--TYIGAMPGKIIQGMKKA-GVKNPVFLLDEIDK 428 (782)
T ss_pred ccc--cccccCChHHHHHHHHh-CCcCCeEEeechhh
Confidence 110 00111112233333332 33567899999865
No 133
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.39 E-value=0.017 Score=59.09 Aligned_cols=109 Identities=8% Similarity=0.034 Sum_probs=72.5
Q ss_pred hhhhHHHHHHHHhcC--CCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCC
Q 010117 172 FERGREELFDLLIEG--PPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPS 249 (518)
Q Consensus 172 r~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~ 249 (518)
|+.+++.+.+++... .....-+-|.|-+|.|||.+...++.+..-...=.+++.+..-.-.....++..|...+....
T Consensus 155 Re~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~ 234 (529)
T KOG2227|consen 155 RELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDL 234 (529)
T ss_pred hHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHh
Confidence 999999999988764 345567888999999999999999985322111123455544433456777888877773222
Q ss_pred CCCccccCCHHHHHHHHHHHhccC--cEEEEEcCCCC
Q 010117 250 RVSVIIGEDYQLKKSILQDYLTAK--KYFIVLDDVFD 284 (518)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~L~~k--r~LlVLDdvw~ 284 (518)
. ......+.+..+.....+. .+|+|||.+..
T Consensus 235 ~----s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~ 267 (529)
T KOG2227|consen 235 V----SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDH 267 (529)
T ss_pred c----CCchhHHHHHHHHHHHhcccceEEEEechhhH
Confidence 1 1122256667777777653 58999999865
No 134
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.38 E-value=0.023 Score=51.52 Aligned_cols=120 Identities=16% Similarity=0.106 Sum_probs=61.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCC--CCCHHHHHHHHHhhcCCCCCCCcccc------CC-HHH
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSI--AYDFGKILDDIINPVMPPSRVSVIIG------ED-YQL 261 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~--~~~~~~i~~~i~~~l~~~~~~~~~~~------~~-~~~ 261 (518)
.+++|+|..|.|||||.+.+..-.. .....+++.-.. ....... +..+..+..... .... .+ -+.
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~-~~~i~~~~~~~~--~~~~t~~e~lLS~G~~ 102 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDLRDLDLESL-RKNIAYVPQDPF--LFSGTIRENILSGGQR 102 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhhhcCHHHH-HhhEEEEcCCch--hccchHHHHhhCHHHH
Confidence 5899999999999999999987421 223333321100 0011111 110000000000 0000 11 112
Q ss_pred HHHHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCCCCCCcEEEEEecchhhhh
Q 010117 262 KKSILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPDNQNGSRVLITLLWFELQK 316 (518)
Q Consensus 262 ~~~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~~~gskIivTTR~~~va~ 316 (518)
..-.+...+..+.=+++||+-.. |......+...+..-..+..||++|.+.....
T Consensus 103 ~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 159 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 22335566666778999999876 44444444444432223567888888876554
No 135
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.38 E-value=0.023 Score=57.08 Aligned_cols=103 Identities=10% Similarity=0.052 Sum_probs=61.3
Q ss_pred HHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCccccc----ceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC--Cc-
Q 010117 181 DLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYF----DCHAWVRVSIAYDFGKILDDIINPVMPPSRV--SV- 253 (518)
Q Consensus 181 ~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F----~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~--~~- 253 (518)
++|..+=..-.++-|+|.+|+|||+++.++.-.......+ ..++||+.-..|++.++.+ +++.++..... ..
T Consensus 93 ~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~~~~~~l~~i 171 (317)
T PRK04301 93 ELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGLDPDEVLDNI 171 (317)
T ss_pred HHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCCChHhhhccE
Confidence 3343443456889999999999999999887642222111 3689999999888877654 34444432210 00
Q ss_pred --cccCC---HHHHHHHHHHHhcc--CcEEEEEcCCCC
Q 010117 254 --IIGED---YQLKKSILQDYLTA--KKYFIVLDDVFD 284 (518)
Q Consensus 254 --~~~~~---~~~~~~~l~~~L~~--kr~LlVLDdvw~ 284 (518)
....+ ...+...+...+.. +--|||+|-+-.
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa 209 (317)
T PRK04301 172 HVARAYNSDHQMLLAEKAEELIKEGENIKLVIVDSLTA 209 (317)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhccCceeEEEEECchH
Confidence 01111 12334455555543 334999999854
No 136
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.37 E-value=0.012 Score=63.96 Aligned_cols=42 Identities=14% Similarity=0.059 Sum_probs=31.4
Q ss_pred hhhhHHHHHHHHhcC---CCCceEEEEEcCCCccHHHHHHHHHcC
Q 010117 172 FERGREELFDLLIEG---PPRLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 172 r~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
-+..++++..+|... .....++.|+|+.|+||||+++.+...
T Consensus 89 ~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 89 HKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred cHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 445566677777653 123467999999999999999999873
No 137
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.37 E-value=0.018 Score=61.87 Aligned_cols=130 Identities=10% Similarity=0.063 Sum_probs=65.0
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRV 251 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~ 251 (518)
.+..++.+.+.+..+. -...+-++|+.|+||||+|+.+.+. +. |.-|.... .+......+.+..........
T Consensus 21 Qe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~--L~----C~~~~~~~-~Cg~C~sCr~i~~~~h~Diie 92 (605)
T PRK05896 21 QELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKA--IN----CLNPKDGD-CCNSCSVCESINTNQSVDIVE 92 (605)
T ss_pred cHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHH--hc----CCCCCCCC-CCcccHHHHHHHcCCCCceEE
Confidence 5666677777775542 2356889999999999999998773 21 11122111 111112222222111000000
Q ss_pred Cc-cccCCHHHHH---HHHHHH-hccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEEe
Q 010117 252 SV-IIGEDYQLKK---SILQDY-LTAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLITL 309 (518)
Q Consensus 252 ~~-~~~~~~~~~~---~~l~~~-L~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTT 309 (518)
-. ......+++. ..+... ..+++-++|+|++.. ....++.+...+......+.+|++|
T Consensus 93 Idaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 93 LDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred eccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEEC
Confidence 00 0111222222 222211 123444799999876 4667788877776544455555544
No 138
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.36 E-value=0.019 Score=53.27 Aligned_cols=83 Identities=16% Similarity=0.042 Sum_probs=46.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCcccc-cc---eEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHH
Q 010117 192 VVAILDSSGFEMTAFAADAFNNNHVKFY-FD---CHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQ 267 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~d~~~~~~-F~---~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 267 (518)
||+|.|.+|+||||+|+.+.. ..... +. ....++...-......... -...........+...+.+.+.+.|.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~--~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ--ILNKRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH--HHTTCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH--HhCccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 799999999999999999987 33321 22 1333333333322222222 11111111111246778888888888
Q ss_pred HHhccCcEEE
Q 010117 268 DYLTAKKYFI 277 (518)
Q Consensus 268 ~~L~~kr~Ll 277 (518)
...+++..-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 7777765433
No 139
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.34 E-value=0.029 Score=64.03 Aligned_cols=110 Identities=15% Similarity=0.162 Sum_probs=59.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDY 269 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 269 (518)
..++.++|+.|+|||++|+.+... ....-...+-+..|.-.+... ...+ ++.+..- ........ +.+.
T Consensus 595 ~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~-~~~l---~g~~~g~--~g~~~~g~----l~~~ 662 (852)
T TIGR03346 595 IGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHS-VARL---IGAPPGY--VGYEEGGQ----LTEA 662 (852)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccch-HHHh---cCCCCCc--cCcccccH----HHHH
Confidence 457889999999999999999872 221112233344443222111 1111 1211100 01111122 3333
Q ss_pred hccC-cEEEEEcCCCC-ChHHHHHHhhhcCCC-----------CCCcEEEEEecc
Q 010117 270 LTAK-KYFIVLDDVFD-DSEIWHDLVEFLPDN-----------QNGSRVLITLLW 311 (518)
Q Consensus 270 L~~k-r~LlVLDdvw~-~~~~~~~l~~~l~~~-----------~~gskIivTTR~ 311 (518)
++.+ ..+|+||++.. .+..++.+...+..+ -..+-||+||..
T Consensus 663 v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~ 717 (852)
T TIGR03346 663 VRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 717 (852)
T ss_pred HHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCc
Confidence 3333 34999999987 688888888877533 123447777764
No 140
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.33 E-value=0.045 Score=51.54 Aligned_cols=123 Identities=14% Similarity=0.186 Sum_probs=60.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDY 269 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 269 (518)
.+++.|+|+.|.|||||.+.+...... .+.-.|+... ...+ ....++...+....... ........-.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~l---a~~G~~v~a~-~~~~-~~~d~i~~~l~~~~si~-~~~S~f~~el~~l~~~ 102 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFL---AHIGSFVPAD-SATI-GLVDKIFTRMSSRESVS-SGQSAFMIDLYQVSKA 102 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH---HhCCCeeEcC-CcEE-eeeeeeeeeeCCccChh-hccchHHHHHHHHHHH
Confidence 488999999999999999887632111 0111111111 1100 11222222332221100 0111111112223332
Q ss_pred h--ccCcEEEEEcCCCC--ChHHHH----HHhhhcCCC-CCCcEEEEEecchhhhhhc
Q 010117 270 L--TAKKYFIVLDDVFD--DSEIWH----DLVEFLPDN-QNGSRVLITLLWFELQKGE 318 (518)
Q Consensus 270 L--~~kr~LlVLDdvw~--~~~~~~----~l~~~l~~~-~~gskIivTTR~~~va~~~ 318 (518)
+ ..++-|++||..-. +..... .+...+... ..+..+|+||...+++...
T Consensus 103 l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 103 LRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 2 36789999999976 332211 122233222 2346799999998887754
No 141
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.33 E-value=0.025 Score=64.36 Aligned_cols=110 Identities=17% Similarity=0.194 Sum_probs=57.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDY 269 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 269 (518)
..++.++|+.|+|||+||+.+.+- .-..-...+.+..+.-.+ ......+ ++.+. .....+. ...+.+.
T Consensus 598 ~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~-~~~~~~L---iG~~p-----gy~g~~~-~g~l~~~ 665 (857)
T PRK10865 598 IGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFME-KHSVSRL---VGAPP-----GYVGYEE-GGYLTEA 665 (857)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhh-hhhHHHH---hCCCC-----cccccch-hHHHHHH
Confidence 357889999999999999999872 211112233444432211 1111111 22211 1001110 1123333
Q ss_pred hccC-cEEEEEcCCCC-ChHHHHHHhhhcCCC----C-------CCcEEEEEecc
Q 010117 270 LTAK-KYFIVLDDVFD-DSEIWHDLVEFLPDN----Q-------NGSRVLITLLW 311 (518)
Q Consensus 270 L~~k-r~LlVLDdvw~-~~~~~~~l~~~l~~~----~-------~gskIivTTR~ 311 (518)
++.+ .-+|+||++.. .+..++.+...+..+ + ..+-||+||..
T Consensus 666 v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~ 720 (857)
T PRK10865 666 VRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL 720 (857)
T ss_pred HHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCc
Confidence 3333 35999999986 578888887766432 1 12337777765
No 142
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.32 E-value=0.028 Score=51.08 Aligned_cols=123 Identities=16% Similarity=0.062 Sum_probs=61.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCC--CCCHHHHHHHHHhhcCCCCCC-C-cc-c--cCCHHHHH
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSI--AYDFGKILDDIINPVMPPSRV-S-VI-I--GEDYQLKK 263 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~--~~~~~~i~~~i~~~l~~~~~~-~-~~-~--~~~~~~~~ 263 (518)
.+++|+|..|.|||||.+.+..-.. .....+++.-.. ..+.....+.+. .+...... . .. + -..-+...
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~~~lLS~G~~qr 104 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLR---PTSGRVRLDGADISQWDPNELGDHVG-YLPQDDELFSGSIAENILSGGQRQR 104 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEEcccCCHHHHHhheE-EECCCCccccCcHHHHCcCHHHHHH
Confidence 5899999999999999999987321 122233321100 011111111110 01000000 0 00 0 01122223
Q ss_pred HHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC-CCCCcEEEEEecchhhhhh
Q 010117 264 SILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD-NQNGSRVLITLLWFELQKG 317 (518)
Q Consensus 264 ~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~-~~~gskIivTTR~~~va~~ 317 (518)
-.+...+..+.=+++||+--. |......+...+.. ...|..||++|.+......
T Consensus 105 v~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 161 (173)
T cd03246 105 LGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLAS 161 (173)
T ss_pred HHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 345555666677899999876 44444444444432 1236778888888765543
No 143
>PRK06620 hypothetical protein; Validated
Probab=96.31 E-value=0.0086 Score=56.47 Aligned_cols=23 Identities=17% Similarity=-0.126 Sum_probs=20.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
+.+-|+|+.|+|||+|++.+.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhc
Confidence 67899999999999999998874
No 144
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.30 E-value=0.018 Score=54.42 Aligned_cols=99 Identities=16% Similarity=0.082 Sum_probs=53.3
Q ss_pred HHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCC--ccccCCH
Q 010117 182 LLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVS--VIIGEDY 259 (518)
Q Consensus 182 ~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~--~~~~~~~ 259 (518)
+|..+=..-.++.|.|.+|+||||+|.++... ....=..++|++....++ +-+++++.......... .....+.
T Consensus 11 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (218)
T cd01394 11 LLGGGVERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS--ERFRQIAGDRPERAASSIIVFEPMDF 86 (218)
T ss_pred HhcCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH--HHHHHHHhHChHhhhcCEEEEeCCCH
Confidence 33334345689999999999999999998763 322233577887665554 22333333210000000 0012222
Q ss_pred HHH---HHHHHHHhccCcEEEEEcCCCC
Q 010117 260 QLK---KSILQDYLTAKKYFIVLDDVFD 284 (518)
Q Consensus 260 ~~~---~~~l~~~L~~kr~LlVLDdvw~ 284 (518)
.++ ...+...+..+.-++|+|-+-.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~lvvIDsi~~ 114 (218)
T cd01394 87 NEQGRAIQETETFADEKVDLVVVDSATA 114 (218)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEechHH
Confidence 222 2344444544456899999753
No 145
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.30 E-value=0.05 Score=58.89 Aligned_cols=134 Identities=10% Similarity=-0.081 Sum_probs=66.5
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCC----
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMP---- 247 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~---- 247 (518)
-+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+.-.-....+ ..+++.-..-+.|...-+.
T Consensus 18 q~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-------~~pCg~C~~C~~i~~~~~~~~dv 89 (584)
T PRK14952 18 QEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPT-------ATPCGVCESCVALAPNGPGSIDV 89 (584)
T ss_pred cHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-------CCcccccHHHHHhhcccCCCceE
Confidence 4555666777776542 234578999999999999999887311111100 0011111111111110000
Q ss_pred ---CCCCCccccCCHHHHHHHHHHH-hccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEE-EEecchhh
Q 010117 248 ---PSRVSVIIGEDYQLKKSILQDY-LTAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVL-ITLLWFEL 314 (518)
Q Consensus 248 ---~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIi-vTTR~~~v 314 (518)
... ......+..++...+... ..+++-++|+|++.. .....+.|...+..-.....+| +||....+
T Consensus 90 ieidaa-s~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kl 161 (584)
T PRK14952 90 VELDAA-SHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKV 161 (584)
T ss_pred EEeccc-cccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhh
Confidence 000 000111222222222211 134566899999976 4677888887777544455555 45444443
No 146
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.30 E-value=0.023 Score=61.97 Aligned_cols=132 Identities=11% Similarity=-0.002 Sum_probs=67.1
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRV 251 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~ 251 (518)
-+..++.|..++..+. -...+.++|..|+||||+|+.+.+. +.... +-.....++.....+.|..........
T Consensus 21 q~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~--l~c~~----~~~~~~~c~~c~~c~~i~~~~~~d~~~ 93 (585)
T PRK14950 21 QEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKA--VNCTT----NDPKGRPCGTCEMCRAIAEGSAVDVIE 93 (585)
T ss_pred CHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHH--hcCCC----CCCCCCCCccCHHHHHHhcCCCCeEEE
Confidence 4555666766666542 2345689999999999999998873 21110 000011222223333343322111000
Q ss_pred Ccc-ccCCHHHHH---HHHHHH-hccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEEec
Q 010117 252 SVI-IGEDYQLKK---SILQDY-LTAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLITLL 310 (518)
Q Consensus 252 ~~~-~~~~~~~~~---~~l~~~-L~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR 310 (518)
-.. .....+++. ..+... ..+++-++|+|++.. .....+.|...+......+.+|++|.
T Consensus 94 i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~ 158 (585)
T PRK14950 94 MDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATT 158 (585)
T ss_pred EeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 000 112222222 222211 124566899999876 35667777777665444566666553
No 147
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.29 E-value=0.02 Score=57.23 Aligned_cols=102 Identities=9% Similarity=0.058 Sum_probs=61.6
Q ss_pred HHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCccc----ccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC--Cc--
Q 010117 182 LLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKF----YFDCHAWVRVSIAYDFGKILDDIINPVMPPSRV--SV-- 253 (518)
Q Consensus 182 ~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~--~~-- 253 (518)
+|..+=..-+++-|+|..|+|||+|+.++.-...... .=..++||+.-..|++.++.+ +++.++..... ..
T Consensus 88 lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~ 166 (313)
T TIGR02238 88 ILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNIL 166 (313)
T ss_pred HhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEE
Confidence 4444434558899999999999999988764322221 113589999999999888764 56666543220 00
Q ss_pred -cccCCHHHHH---HHHHHHhc-cCcEEEEEcCCCC
Q 010117 254 -IIGEDYQLKK---SILQDYLT-AKKYFIVLDDVFD 284 (518)
Q Consensus 254 -~~~~~~~~~~---~~l~~~L~-~kr~LlVLDdvw~ 284 (518)
....+.++.. ..+...+. ++--|||+|.+-.
T Consensus 167 ~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSisa 202 (313)
T TIGR02238 167 YARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIMA 202 (313)
T ss_pred EecCCCHHHHHHHHHHHHHHhhccCCCEEEEEcchH
Confidence 0122333333 33333443 3455899999863
No 148
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.29 E-value=0.027 Score=54.07 Aligned_cols=126 Identities=10% Similarity=0.031 Sum_probs=76.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCC-----CCCHHHHHHHHHhhcCCCCCC--CccccCCHHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSI-----AYDFGKILDDIINPVMPPSRV--SVIIGEDYQLK 262 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~-----~~~~~~i~~~i~~~l~~~~~~--~~~~~~~~~~~ 262 (518)
-.+++|||..|+|||||++.+..= ..-. ...++..-.+ .....+-..++++.++..... .-+...+-.+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L--~~pt-~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGL--EEPT-SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcC--cCCC-CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 468999999999999999999872 2222 2223222111 223344566777777644321 11233334444
Q ss_pred HH-HHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcC--CCCCCcEEEEEecchhhhhhc
Q 010117 263 KS-ILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLP--DNQNGSRVLITLLWFELQKGE 318 (518)
Q Consensus 263 ~~-~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~--~~~~gskIivTTR~~~va~~~ 318 (518)
+. .+.+.|.-+.=|||.|.--+ |...-.++...+. ....|-..+.-|.+-.|+..+
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhh
Confidence 43 57788888999999999765 3333333333332 122366788889998888877
No 149
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.29 E-value=0.02 Score=57.75 Aligned_cols=102 Identities=12% Similarity=0.086 Sum_probs=61.8
Q ss_pred HHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCccc----ccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC--C---
Q 010117 182 LLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKF----YFDCHAWVRVSIAYDFGKILDDIINPVMPPSRV--S--- 252 (518)
Q Consensus 182 ~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~--~--- 252 (518)
+|..+=..-+++-|+|..|+|||+|+.+++-...... .-..++||+.-..|++.++.+ +++.++..... .
T Consensus 118 lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~ 196 (344)
T PLN03187 118 LLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNII 196 (344)
T ss_pred hcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEE
Confidence 3433434557888999999999999988864322211 123589999999999888765 55666543211 0
Q ss_pred ccccCCHHHHHHH---HHHHhc-cCcEEEEEcCCCC
Q 010117 253 VIIGEDYQLKKSI---LQDYLT-AKKYFIVLDDVFD 284 (518)
Q Consensus 253 ~~~~~~~~~~~~~---l~~~L~-~kr~LlVLDdvw~ 284 (518)
-....+.+++... +...+. .+--|||+|.+-.
T Consensus 197 ~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSita 232 (344)
T PLN03187 197 YARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIA 232 (344)
T ss_pred EecCCCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 0123344443333 333343 3445899999853
No 150
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.28 E-value=0.021 Score=54.44 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=23.5
Q ss_pred CCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 187 PPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 187 ~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.....+|+|.|..|.|||||++.+..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999999887
No 151
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.26 E-value=0.04 Score=55.24 Aligned_cols=117 Identities=9% Similarity=0.033 Sum_probs=68.3
Q ss_pred hhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccc---------------------cceEEEEEcCCC
Q 010117 173 ERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFY---------------------FDCHAWVRVSIA 231 (518)
Q Consensus 173 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~---------------------F~~~~wv~vs~~ 231 (518)
+....++..+.........-+-+.|+.|+||||+|..+.+. +-.. .+....+.-|..
T Consensus 7 ~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~ 84 (325)
T COG0470 7 QEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKE--LLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDL 84 (325)
T ss_pred hhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHH--HhCCCcccCCcccchhhhhHHhhcCCCceEEeccccc
Confidence 34455666666644323335899999999999999888763 2211 122333443433
Q ss_pred CC---HHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHHhccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEE
Q 010117 232 YD---FGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDYLTAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLI 307 (518)
Q Consensus 232 ~~---~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIiv 307 (518)
.. ..+..+++.+....... .++.-++++|++.. ..+.-+.+...+......+.+|+
T Consensus 85 ~~~~i~~~~vr~~~~~~~~~~~--------------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il 144 (325)
T COG0470 85 RKIDIIVEQVRELAEFLSESPL--------------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFIL 144 (325)
T ss_pred CCCcchHHHHHHHHHHhccCCC--------------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEE
Confidence 33 23333333333222210 25677899999987 45556666666665556778888
Q ss_pred Eecc
Q 010117 308 TLLW 311 (518)
Q Consensus 308 TTR~ 311 (518)
+|..
T Consensus 145 ~~n~ 148 (325)
T COG0470 145 ITND 148 (325)
T ss_pred EcCC
Confidence 7773
No 152
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.26 E-value=0.0091 Score=55.46 Aligned_cols=57 Identities=16% Similarity=0.082 Sum_probs=35.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCC-CCHHHHHHHHHhhcCCC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIA-YDFGKILDDIINPVMPP 248 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~~ 248 (518)
++||.+||+.|+||||.+..+... .+..=..+..++.... ....+-++...+.++.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~--~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAAR--LKLKGKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHH--HhhccccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 379999999999999977666552 2222223555665322 23455566666666654
No 153
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.24 E-value=0.075 Score=50.47 Aligned_cols=97 Identities=19% Similarity=0.208 Sum_probs=57.3
Q ss_pred hhhhHHHHHHHH---hcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCC
Q 010117 172 FERGREELFDLL---IEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPP 248 (518)
Q Consensus 172 r~~~~~~l~~~L---~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 248 (518)
.|..++.|++-. ..+. ...-+-++|..|.|||+|++.+.+...-+. .+ -|.|++.
T Consensus 32 ie~Qk~~l~~Nt~~Fl~G~-pannvLL~G~rGtGKSSlVkall~~y~~~G---LR-lIev~k~----------------- 89 (249)
T PF05673_consen 32 IERQKEALIENTEQFLQGL-PANNVLLWGARGTGKSSLVKALLNEYADQG---LR-LIEVSKE----------------- 89 (249)
T ss_pred HHHHHHHHHHHHHHHHcCC-CCcceEEecCCCCCHHHHHHHHHHHHhhcC---ce-EEEECHH-----------------
Confidence 666666655433 2232 345577799999999999999988322111 11 1223222
Q ss_pred CCCCccccCCHHHHHHHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC
Q 010117 249 SRVSVIIGEDYQLKKSILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD 298 (518)
Q Consensus 249 ~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~ 298 (518)
+-.+...+...|+. ...||+|.+||+.= .......++..|..
T Consensus 90 ------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeG 133 (249)
T PF05673_consen 90 ------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEG 133 (249)
T ss_pred ------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcC
Confidence 22233333333332 34699999999864 35667788877753
No 154
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.23 E-value=0.38 Score=52.75 Aligned_cols=40 Identities=13% Similarity=-0.047 Sum_probs=29.9
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
-+..++.|...+..+. -...+-++|+.|+||||+|+.+.+
T Consensus 22 q~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk 61 (614)
T PRK14971 22 QEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAK 61 (614)
T ss_pred cHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence 4555667777776552 335578999999999999988766
No 155
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.22 E-value=0.016 Score=57.05 Aligned_cols=87 Identities=15% Similarity=0.103 Sum_probs=45.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCcc-cccceEEEEEcCCC-CCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHH
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVK-FYFDCHAWVRVSIA-YDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSIL 266 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~-~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 266 (518)
..+++.|+|++|+||||++..+......+ ..+ .+..|+.... ....+.+....+.++.+.. ...+...+...+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~D~~r~~a~eql~~~~~~~~~p~~----~~~~~~~l~~~l 267 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALITTDTYRIGAVEQLKTYAKILGVPVK----VARDPKELRKAL 267 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEECCccchhHHHHHHHHHHHhCCcee----ccCCHHHHHHHH
Confidence 45799999999999999998887632212 112 3444554321 1123333333444443332 223444554444
Q ss_pred HHHhccCcEEEEEcCC
Q 010117 267 QDYLTAKKYFIVLDDV 282 (518)
Q Consensus 267 ~~~L~~kr~LlVLDdv 282 (518)
... .+ .=+|++|..
T Consensus 268 ~~~-~~-~d~vliDt~ 281 (282)
T TIGR03499 268 DRL-RD-KDLILIDTA 281 (282)
T ss_pred HHc-cC-CCEEEEeCC
Confidence 433 33 346777753
No 156
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.21 E-value=0.014 Score=56.82 Aligned_cols=24 Identities=13% Similarity=-0.024 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
...-+.++|++|+||||+|+.+++
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHH
Confidence 345688999999999999999976
No 157
>COG3899 Predicted ATPase [General function prediction only]
Probab=96.21 E-value=0.081 Score=60.16 Aligned_cols=46 Identities=17% Similarity=0.143 Sum_probs=36.5
Q ss_pred hhhhHHHHHHHHhcC-CCCceEEEEEcCCCccHHHHHHHHHcCCCcccc
Q 010117 172 FERGREELFDLLIEG-PPRLSVVAILDSSGFEMTAFAADAFNNNHVKFY 219 (518)
Q Consensus 172 r~~~~~~l~~~L~~~-~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~ 219 (518)
|+.+.+.|...+..- ...-.++.+.|..|+|||+|++.|.. .+.+.
T Consensus 5 Re~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~ 51 (849)
T COG3899 5 RETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHK--PITQQ 51 (849)
T ss_pred hHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHH--HHhcc
Confidence 778888888877653 34556999999999999999999998 44443
No 158
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.20 E-value=0.0083 Score=55.90 Aligned_cols=80 Identities=14% Similarity=0.012 Sum_probs=46.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHH
Q 010117 188 PRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQ 267 (518)
Q Consensus 188 ~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 267 (518)
.++.+|+|.|.+|.||||+|+.++. .+...+ .+-++...-+...+ .....+..... -..+...|.+-+.+.|.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~--~~~~~~--~~~I~~D~YYk~~~-~~~~~~~~~~n--~d~p~A~D~dLl~~~L~ 78 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE--QLGVEK--VVVISLDDYYKDQS-HLPFEERNKIN--YDHPEAFDLDLLIEHLK 78 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH--HhCcCc--ceEeeccccccchh-hcCHhhcCCcC--ccChhhhcHHHHHHHHH
Confidence 3568999999999999999999998 444331 11122111111000 00010111111 12246778888888899
Q ss_pred HHhccCc
Q 010117 268 DYLTAKK 274 (518)
Q Consensus 268 ~~L~~kr 274 (518)
..+.|+.
T Consensus 79 ~L~~g~~ 85 (218)
T COG0572 79 DLKQGKP 85 (218)
T ss_pred HHHcCCc
Confidence 9888887
No 159
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.19 E-value=0.13 Score=57.93 Aligned_cols=41 Identities=12% Similarity=0.302 Sum_probs=33.2
Q ss_pred hhhhHHHHHHHHhc----CCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIE----GPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~----~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.++.+++|+++|.. +...-.++.++|++|+||||+|+.+..
T Consensus 327 ~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~ 371 (784)
T PRK10787 327 LERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK 371 (784)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 77788888887763 123456899999999999999999997
No 160
>PRK13695 putative NTPase; Provisional
Probab=96.19 E-value=0.0054 Score=55.79 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 010117 192 VVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.|.|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998874
No 161
>PRK14974 cell division protein FtsY; Provisional
Probab=96.17 E-value=0.075 Score=53.50 Aligned_cols=114 Identities=11% Similarity=0.067 Sum_probs=56.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCccc-ccceEEEEEcCCCCC--HHHHHHHHHhhcCCCCCCCccccCCHHHHH-H
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVKF-YFDCHAWVRVSIAYD--FGKILDDIINPVMPPSRVSVIIGEDYQLKK-S 264 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~-~F~~~~wv~vs~~~~--~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~-~ 264 (518)
+..+|.++|+.|+||||++..+.. .... .+. ++.+. .+.+. ..+-++.....++.+.... ....+..... .
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~--~l~~~g~~-V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~-~~g~dp~~v~~~ 213 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY--YLKKNGFS-VVIAA-GDTFRAGAIEQLEEHAERLGVKVIKH-KYGADPAAVAYD 213 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH--HHHHcCCe-EEEec-CCcCcHHHHHHHHHHHHHcCCceecc-cCCCCHHHHHHH
Confidence 468999999999999997777665 2222 232 23333 23332 2334555666666543211 1222333322 2
Q ss_pred HHHHHhccCcEEEEEcCCCC---ChHHHHHHhhhcCCCCCCcEEEE
Q 010117 265 ILQDYLTAKKYFIVLDDVFD---DSEIWHDLVEFLPDNQNGSRVLI 307 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~---~~~~~~~l~~~l~~~~~gskIiv 307 (518)
.+........=+|++|-.-. +...+..+........+...++|
T Consensus 214 ai~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLV 259 (336)
T PRK14974 214 AIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFV 259 (336)
T ss_pred HHHHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEe
Confidence 23322222223888898865 23445555443332233334444
No 162
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.16 E-value=0.07 Score=58.16 Aligned_cols=142 Identities=8% Similarity=-0.020 Sum_probs=66.4
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEE-cCCCCCHHHHHHHHHhhcCCCCC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVR-VSIAYDFGKILDDIINPVMPPSR 250 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~-vs~~~~~~~i~~~i~~~l~~~~~ 250 (518)
-+..++.|.+.+..+. -...+.++|+.|+||||+|..+.+.-.....++.-.|.. +..++..-..-+.+...-.....
T Consensus 21 Qe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~ 99 (620)
T PRK14954 21 QEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNIS 99 (620)
T ss_pred cHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeE
Confidence 3445555666665442 234588999999999999988876321111111001110 00111111111111111000000
Q ss_pred CCcc-ccCCHHHHHHHHHHH----hccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEEe-cchhh
Q 010117 251 VSVI-IGEDYQLKKSILQDY----LTAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLITL-LWFEL 314 (518)
Q Consensus 251 ~~~~-~~~~~~~~~~~l~~~----L~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTT-R~~~v 314 (518)
.-.. .....+++...+... ..+++-++|+|++.. .....+.|...+..-...+.+|++| +...+
T Consensus 100 ~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 100 EFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred EecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 0000 111233443332222 234566889999876 4566777887776544455555444 43333
No 163
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.15 E-value=0.028 Score=51.01 Aligned_cols=120 Identities=14% Similarity=0.114 Sum_probs=62.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCC-CCCCCcccc--------CC-HH
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMP-PSRVSVIIG--------ED-YQ 260 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~-~~~~~~~~~--------~~-~~ 260 (518)
.+++|+|..|.|||||.+.+..... .....+++.-..-.+.. ..+...++. ......... .+ -+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~ 100 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGGM 100 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHHH
Confidence 5899999999999999999987421 12333333110000000 011111110 000000000 11 12
Q ss_pred HHHHHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC-CCCCcEEEEEecchhhhh
Q 010117 261 LKKSILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD-NQNGSRVLITLLWFELQK 316 (518)
Q Consensus 261 ~~~~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~-~~~gskIivTTR~~~va~ 316 (518)
...-.+...+..+.=+++||+--. |......+...+.. ...|..||++|.+...+.
T Consensus 101 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 101 KQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 223356677777888999999876 44444444444432 123677899988876544
No 164
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.15 E-value=0.024 Score=52.70 Aligned_cols=112 Identities=11% Similarity=0.087 Sum_probs=56.6
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCcccc
Q 010117 177 EELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIG 256 (518)
Q Consensus 177 ~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~ 256 (518)
.+.+..++... -++..|.|.+|.||||+...+... .... ...+.+......-...+... .+....
T Consensus 7 ~~a~~~~l~~~--~~~~~l~G~aGtGKT~~l~~~~~~--~~~~-g~~v~~~apT~~Aa~~L~~~----~~~~a~------ 71 (196)
T PF13604_consen 7 REAVRAILTSG--DRVSVLQGPAGTGKTTLLKALAEA--LEAA-GKRVIGLAPTNKAAKELREK----TGIEAQ------ 71 (196)
T ss_dssp HHHHHHHHHCT--CSEEEEEESTTSTHHHHHHHHHHH--HHHT-T--EEEEESSHHHHHHHHHH----HTS-EE------
T ss_pred HHHHHHHHhcC--CeEEEEEECCCCCHHHHHHHHHHH--HHhC-CCeEEEECCcHHHHHHHHHh----hCcchh------
Confidence 33444444332 367888999999999999888762 2222 12333333333222232222 221110
Q ss_pred CCHHHHHHHHHHHh---------ccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEEe
Q 010117 257 EDYQLKKSILQDYL---------TAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLITL 309 (518)
Q Consensus 257 ~~~~~~~~~l~~~L---------~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTT 309 (518)
+... .+...- ..+.-+||+|++.. +...+..+....+. .|+|+|+.=
T Consensus 72 -Ti~~---~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvG 128 (196)
T PF13604_consen 72 -TIHS---FLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVG 128 (196)
T ss_dssp -EHHH---HTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE
T ss_pred -hHHH---HHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEEC
Confidence 0000 000000 12344999999987 56778777777665 467877653
No 165
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.14 E-value=0.026 Score=56.47 Aligned_cols=103 Identities=8% Similarity=-0.001 Sum_probs=60.0
Q ss_pred HHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCccc----ccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC--C--
Q 010117 181 DLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKF----YFDCHAWVRVSIAYDFGKILDDIINPVMPPSRV--S-- 252 (518)
Q Consensus 181 ~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~--~-- 252 (518)
++|..+=..-.++-|+|.+|+|||||+..+........ .-..++|++.-..|+..++ .++++.++..... .
T Consensus 87 ~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~~~~~l~~i 165 (316)
T TIGR02239 87 KLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLNPEDVLDNV 165 (316)
T ss_pred HHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCChHHhhccE
Confidence 34444434578999999999999999998865222211 1135789998888888764 3445554433210 0
Q ss_pred -ccccCCHHHHHHH---HHHHhcc-CcEEEEEcCCCC
Q 010117 253 -VIIGEDYQLKKSI---LQDYLTA-KKYFIVLDDVFD 284 (518)
Q Consensus 253 -~~~~~~~~~~~~~---l~~~L~~-kr~LlVLDdvw~ 284 (518)
-....+.+++... +...+.. +--|||+|.+-.
T Consensus 166 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~a 202 (316)
T TIGR02239 166 AYARAYNTDHQLQLLQQAAAMMSESRFALLIVDSATA 202 (316)
T ss_pred EEEecCChHHHHHHHHHHHHhhccCCccEEEEECcHH
Confidence 0012233333333 3333433 455899999854
No 166
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.13 E-value=0.015 Score=60.01 Aligned_cols=25 Identities=16% Similarity=0.097 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
..+-+.++|++|+|||+||+.+.+.
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 4567889999999999999999983
No 167
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.12 E-value=0.04 Score=55.37 Aligned_cols=72 Identities=11% Similarity=0.140 Sum_probs=46.0
Q ss_pred hhhHHHHHHHHhcCC-CCceEEEEEcCCCccHHHHHHHHHcCCCcccc----c---ceEEEEEcCCCCCHHHHHHHHHhh
Q 010117 173 ERGREELFDLLIEGP-PRLSVVAILDSSGFEMTAFAADAFNNNHVKFY----F---DCHAWVRVSIAYDFGKILDDIINP 244 (518)
Q Consensus 173 ~~~~~~l~~~L~~~~-~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~----F---~~~~wv~vs~~~~~~~i~~~i~~~ 244 (518)
+.-.+.|.+.+.+.+ ....+|+|.|.=|+||||+.+.+.+. .+.. + ..-.|-.-+...-...++.+|..+
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~--L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~ 79 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEE--LKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQ 79 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHH--HhcccccceeeEEEccccCCCcchHHHHHHHHHHHH
Confidence 445567777777653 67889999999999999999998874 3333 2 223344443332244555555555
Q ss_pred cC
Q 010117 245 VM 246 (518)
Q Consensus 245 l~ 246 (518)
+.
T Consensus 80 l~ 81 (325)
T PF07693_consen 80 LE 81 (325)
T ss_pred HH
Confidence 43
No 168
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.12 E-value=0.043 Score=51.69 Aligned_cols=126 Identities=14% Similarity=0.173 Sum_probs=68.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC------------ccc------ccceE--EEEEcCCCC----CHHHH---------
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNH------------VKF------YFDCH--AWVRVSIAY----DFGKI--------- 237 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~------------~~~------~F~~~--~wv~vs~~~----~~~~i--------- 237 (518)
.+++|+|..|+|||||++.+.-=.+ ... .|..+ +|=.--... ++.++
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~ 113 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHG 113 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccCC
Confidence 5899999999999999999863111 000 12211 121111112 23332
Q ss_pred -------HHHHHhhcCCCCCC--CccccCCHHHHHH-HHHHHhccCcEEEEEcCCCC--Ch----HHHHHHhhhcCCCCC
Q 010117 238 -------LDDIINPVMPPSRV--SVIIGEDYQLKKS-ILQDYLTAKKYFIVLDDVFD--DS----EIWHDLVEFLPDNQN 301 (518)
Q Consensus 238 -------~~~i~~~l~~~~~~--~~~~~~~~~~~~~-~l~~~L~~kr~LlVLDdvw~--~~----~~~~~l~~~l~~~~~ 301 (518)
..+++.+++.+..- ..|...+-.+++. .+.+.|.-+.=+||+|..-+ |. ..|+-+...- ...
T Consensus 114 ~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~--~~~ 191 (252)
T COG1124 114 LSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELK--KER 191 (252)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHH--Hhc
Confidence 23344444443220 1123334444443 46777777888999999866 33 3344333221 223
Q ss_pred CcEEEEEecchhhhhhc
Q 010117 302 GSRVLITLLWFELQKGE 318 (518)
Q Consensus 302 gskIivTTR~~~va~~~ 318 (518)
+-.+|+-|.+..++..+
T Consensus 192 ~lt~l~IsHdl~~v~~~ 208 (252)
T COG1124 192 GLTYLFISHDLALVEHM 208 (252)
T ss_pred CceEEEEeCcHHHHHHH
Confidence 55688888888777665
No 169
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.11 E-value=0.0021 Score=36.77 Aligned_cols=18 Identities=22% Similarity=0.277 Sum_probs=16.4
Q ss_pred ceeEEEecCCCCCcCCCC
Q 010117 501 HLRVLNMGFAVLDNIHPD 518 (518)
Q Consensus 501 ~LrVLdL~~~~i~~LP~s 518 (518)
.|++|||++|+|+++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp TESEEEETSSEESEEGTT
T ss_pred CccEEECCCCcCEeCChh
Confidence 489999999999999975
No 170
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.11 E-value=0.52 Score=50.48 Aligned_cols=130 Identities=10% Similarity=-0.044 Sum_probs=63.7
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCc--ccccceEEEEEcCCCCCHHHHHHHHHhhcCCCC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHV--KFYFDCHAWVRVSIAYDFGKILDDIINPVMPPS 249 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~--~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~ 249 (518)
-+..++.+...+..+. -....-++|+.|+||||+|+.+.+.--- ...+. ++..-.--..+........
T Consensus 19 qe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~---------pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 19 QESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSST---------PCDTCIQCQSALENRHIDI 88 (535)
T ss_pred cHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCC---------CCcccHHHHHHhhcCCCeE
Confidence 3445666777766553 3346689999999999999977652100 00000 0000000000000000000
Q ss_pred CC-CccccCCHHHHHHHHHHH----hccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEEecc
Q 010117 250 RV-SVIIGEDYQLKKSILQDY----LTAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLITLLW 311 (518)
Q Consensus 250 ~~-~~~~~~~~~~~~~~l~~~----L~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~ 311 (518)
.. ........+++.+.+... ..+++-++|+|++.. ..+..+.+...+..-...+++|++|.+
T Consensus 89 ~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd 156 (535)
T PRK08451 89 IEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTD 156 (535)
T ss_pred EEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECC
Confidence 00 000111233333333221 124556899999977 567777777777654456777766654
No 171
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.10 E-value=0.096 Score=53.80 Aligned_cols=102 Identities=13% Similarity=0.088 Sum_probs=58.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCcc--cccceEEEEEcCCCCCH--HHHHHHHHhhcCCCCCCCccccCCHHHHHH
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVK--FYFDCHAWVRVSIAYDF--GKILDDIINPVMPPSRVSVIIGEDYQLKKS 264 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~--~~F~~~~wv~vs~~~~~--~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~ 264 (518)
..++|.++|+.|+||||.+..+....... .+=..+.-++.. ++.. ..-++...+.++.+.. ...+...+..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~----~~~~~~~l~~ 247 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVK----AIESFKDLKE 247 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceE----eeCcHHHHHH
Confidence 45799999999999999988877632211 111224444443 3332 3335666666665433 3334555555
Q ss_pred HHHHHhccCcEEEEEcCCCC---ChHHHHHHhhhcC
Q 010117 265 ILQDYLTAKKYFIVLDDVFD---DSEIWHDLVEFLP 297 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~---~~~~~~~l~~~l~ 297 (518)
.+.+. .+.=++++|..-. +......+...+.
T Consensus 248 ~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~ 281 (388)
T PRK12723 248 EITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLN 281 (388)
T ss_pred HHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHH
Confidence 55543 3455888898865 2334455555554
No 172
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.10 E-value=0.055 Score=58.60 Aligned_cols=133 Identities=9% Similarity=0.013 Sum_probs=64.1
Q ss_pred hhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCC
Q 010117 173 ERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVS 252 (518)
Q Consensus 173 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~ 252 (518)
+..++.|.+.+..+ .-...+-++|+.|+||||+|+.+.+.-......+ ...++.-..-+.|..........-
T Consensus 22 e~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-------~~pCg~C~sC~~i~~g~hpDv~eI 93 (624)
T PRK14959 22 ETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPT-------GEPCNTCEQCRKVTQGMHVDVVEI 93 (624)
T ss_pred HHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCC-------CCCCcccHHHHHHhcCCCCceEEE
Confidence 33445555555443 2246788899999999999999887321111000 011111111222211110000000
Q ss_pred c-cccCCHHHHHHHHHHH-----hccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEEecc-hhh
Q 010117 253 V-IIGEDYQLKKSILQDY-----LTAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLITLLW-FEL 314 (518)
Q Consensus 253 ~-~~~~~~~~~~~~l~~~-----L~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~-~~v 314 (518)
. ......+++.. +.+. ..+++-++|+|++.. ....++.|...+..-.....+|++|.. ..+
T Consensus 94 d~a~~~~Id~iR~-L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kl 162 (624)
T PRK14959 94 DGASNRGIDDAKR-LKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKF 162 (624)
T ss_pred ecccccCHHHHHH-HHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhh
Confidence 0 00112222221 2222 235667999999976 467778887777543334555554443 443
No 173
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.09 E-value=0.023 Score=61.28 Aligned_cols=98 Identities=12% Similarity=0.130 Sum_probs=54.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccc--eEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFD--CHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQ 267 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~--~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 267 (518)
...+.|+|..|+|||.|++.+.+ .....+. .++++ +..++..++...+... .. ..++
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~--~a~~~~~g~~V~Yi------taeef~~el~~al~~~---------~~----~~f~ 372 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGH--YARRLYPGTRVRYV------SSEEFTNEFINSIRDG---------KG----DSFR 372 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEe------eHHHHHHHHHHHHHhc---------cH----HHHH
Confidence 34589999999999999999998 4443321 23455 3344554554433211 11 1233
Q ss_pred HHhccCcEEEEEcCCCC--ChHHHH----HHhhhcCCCCCCcEEEEEecc
Q 010117 268 DYLTAKKYFIVLDDVFD--DSEIWH----DLVEFLPDNQNGSRVLITLLW 311 (518)
Q Consensus 268 ~~L~~kr~LlVLDdvw~--~~~~~~----~l~~~l~~~~~gskIivTTR~ 311 (518)
+.+.. -=+|||||+.. ....|. .+...+. ..|..|||||+.
T Consensus 373 ~~y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~--e~gk~IIITSd~ 419 (617)
T PRK14086 373 RRYRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLH--NANKQIVLSSDR 419 (617)
T ss_pred HHhhc-CCEEEEehhccccCCHHHHHHHHHHHHHHH--hcCCCEEEecCC
Confidence 33332 24788999975 122222 2222222 235668888875
No 174
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.09 E-value=0.11 Score=52.94 Aligned_cols=132 Identities=10% Similarity=0.061 Sum_probs=67.6
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccc----cceEEEEEcCCCCCHHHHHHHHHhh---
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFY----FDCHAWVRVSIAYDFGKILDDIINP--- 244 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~----F~~~~wv~vs~~~~~~~i~~~i~~~--- 244 (518)
-+...+.+...+..+. -...+.|+|+.|+||||+|..+.+. +-.+ +... ....++......+.|...
T Consensus 28 h~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~--Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~~hP 101 (351)
T PRK09112 28 HEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANH--ILSHPDPAEAPE---TLADPDPASPVWRQIAQGAHP 101 (351)
T ss_pred cHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHH--HcCCCccccCcc---ccCCCCCCCHHHHHHHcCCCC
Confidence 4556666777666552 3456889999999999999988763 2211 1111 011111111122233221
Q ss_pred ----cCCCCCCC--c-cccCCHHHHHHHHHHHh-----ccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEEec
Q 010117 245 ----VMPPSRVS--V-IIGEDYQLKKSILQDYL-----TAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLITLL 310 (518)
Q Consensus 245 ----l~~~~~~~--~-~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR 310 (518)
+..+.... . ......+++. .+.+++ .+++-++|+|++.. +....+.+...+........+|++|.
T Consensus 102 dl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~ 179 (351)
T PRK09112 102 NLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISH 179 (351)
T ss_pred CEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEEC
Confidence 11100000 0 0112234433 344443 34677999999987 56677777776664333455444443
No 175
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.05 E-value=0.083 Score=56.14 Aligned_cols=40 Identities=13% Similarity=-0.136 Sum_probs=29.6
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
-+..++.+.+.+..+. -...+.++|+.|+||||+|+.+..
T Consensus 21 q~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk 60 (486)
T PRK14953 21 QEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAK 60 (486)
T ss_pred hHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4555667777776542 234567899999999999998876
No 176
>CHL00176 ftsH cell division protein; Validated
Probab=96.03 E-value=0.054 Score=59.37 Aligned_cols=89 Identities=11% Similarity=0.145 Sum_probs=51.6
Q ss_pred hhhhHHHHHHHHhcCC-------CCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhh
Q 010117 172 FERGREELFDLLIEGP-------PRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINP 244 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~-------~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 244 (518)
..++..+++..|.... ...+-|.++|++|+|||+||+.+.+.. ... ++.++.. ++...
T Consensus 191 ~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~~p-----~i~is~s----~f~~~---- 255 (638)
T CHL00176 191 AKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--EVP-----FFSISGS----EFVEM---- 255 (638)
T ss_pred HHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CCC-----eeeccHH----HHHHH----
Confidence 4445556666665432 224568999999999999999998842 222 3333321 11110
Q ss_pred cCCCCCCCccccCCHHHHHHHHHHHhccCcEEEEEcCCCC
Q 010117 245 VMPPSRVSVIIGEDYQLKKSILQDYLTAKKYFIVLDDVFD 284 (518)
Q Consensus 245 l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~ 284 (518)
. .......+...+.....+..++|++||+..
T Consensus 256 ~---------~g~~~~~vr~lF~~A~~~~P~ILfIDEID~ 286 (638)
T CHL00176 256 F---------VGVGAARVRDLFKKAKENSPCIVFIDEIDA 286 (638)
T ss_pred h---------hhhhHHHHHHHHHHHhcCCCcEEEEecchh
Confidence 0 001122344445555567889999999953
No 177
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.03 E-value=0.029 Score=49.94 Aligned_cols=115 Identities=16% Similarity=0.094 Sum_probs=63.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCC--CHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHH
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAY--DFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQD 268 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~--~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 268 (518)
.+++|+|..|.|||||.+.+.... . .....+++.-..-. ....... .+..-. +-..-+...-.+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~--~-~~~G~i~~~~~~~~~~~~~~~~~----~i~~~~-----qlS~G~~~r~~l~~ 93 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL--K-PTSGEILIDGKDIAKLPLEELRR----RIGYVP-----QLSGGQRQRVALAR 93 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--C-CCccEEEECCEEcccCCHHHHHh----ceEEEe-----eCCHHHHHHHHHHH
Confidence 689999999999999999998732 2 23444444321111 1111111 111100 01112233334566
Q ss_pred HhccCcEEEEEcCCCC--ChHHHHHHhhhcCC-CCCCcEEEEEecchhhhhh
Q 010117 269 YLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD-NQNGSRVLITLLWFELQKG 317 (518)
Q Consensus 269 ~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~-~~~gskIivTTR~~~va~~ 317 (518)
.+....=+++||+.-. |......+...+.. ...+..++++|.+......
T Consensus 94 ~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 94 ALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 6666778999999876 44444444444431 1125678888887665543
No 178
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.03 E-value=0.026 Score=56.36 Aligned_cols=92 Identities=15% Similarity=0.091 Sum_probs=58.2
Q ss_pred CCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCC-ccccCCHHHHHH
Q 010117 186 GPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVS-VIIGEDYQLKKS 264 (518)
Q Consensus 186 ~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~-~~~~~~~~~~~~ 264 (518)
+=+.-+++-|+|++|+||||||.++.. .....-..++||..-..++.. .++.++.....- .....+.++...
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~--~~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~ 123 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIA--EAQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALE 123 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHH
Confidence 333557889999999999999999776 333334567888877766653 334444322100 012334566666
Q ss_pred HHHHHhcc-CcEEEEEcCCCC
Q 010117 265 ILQDYLTA-KKYFIVLDDVFD 284 (518)
Q Consensus 265 ~l~~~L~~-kr~LlVLDdvw~ 284 (518)
.+...++. .--|||+|.|-.
T Consensus 124 i~~~li~s~~~~lIVIDSvaa 144 (325)
T cd00983 124 IADSLVRSGAVDLIVVDSVAA 144 (325)
T ss_pred HHHHHHhccCCCEEEEcchHh
Confidence 66666544 566999999753
No 179
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.03 E-value=0.062 Score=51.07 Aligned_cols=53 Identities=17% Similarity=0.107 Sum_probs=34.7
Q ss_pred HHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCCC--CCCcEEEEEecchhhhhh
Q 010117 265 ILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPDN--QNGSRVLITLLWFELQKG 317 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~--~~gskIivTTR~~~va~~ 317 (518)
.+...+..+.=+++||+--. |......+...+..- ..|..||++|.+......
T Consensus 147 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~ 203 (225)
T PRK10247 147 SLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINH 203 (225)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHh
Confidence 45566666777999999866 455555555554421 236779999988776543
No 180
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.02 E-value=0.069 Score=60.19 Aligned_cols=135 Identities=9% Similarity=-0.084 Sum_probs=66.8
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRV 251 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~ 251 (518)
.+..++.|.+.+..+. -...+.++|..|+||||+|+.+.+.-....... ...+..-..-+.|...-......
T Consensus 20 qe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~-------~~pCg~C~sC~~~~~g~~~~~dv 91 (824)
T PRK07764 20 QEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPT-------STPCGECDSCVALAPGGPGSLDV 91 (824)
T ss_pred cHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCC-------CCCCcccHHHHHHHcCCCCCCcE
Confidence 4555666777776553 234678999999999999999877322111110 00011101111111110000000
Q ss_pred ---CccccCCHHHHHH---HHHH-HhccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEEe-cchhh
Q 010117 252 ---SVIIGEDYQLKKS---ILQD-YLTAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLITL-LWFEL 314 (518)
Q Consensus 252 ---~~~~~~~~~~~~~---~l~~-~L~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTT-R~~~v 314 (518)
........+++.+ .+.. -..++.-++|||++.. ....++.|+..+..-...+.+|++| ...++
T Consensus 92 ~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kL 163 (824)
T PRK07764 92 TEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKV 163 (824)
T ss_pred EEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 0001112233322 2111 1234556889999987 5677888888877655566655544 44443
No 181
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=96.01 E-value=0.087 Score=48.96 Aligned_cols=20 Identities=15% Similarity=0.165 Sum_probs=18.8
Q ss_pred EEEEEcCCCccHHHHHHHHH
Q 010117 192 VVAILDSSGFEMTAFAADAF 211 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~ 211 (518)
+++|+|..|.|||||.+.++
T Consensus 24 ~~~i~G~nGsGKStll~al~ 43 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIR 43 (197)
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 88999999999999999876
No 182
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.01 E-value=0.042 Score=51.16 Aligned_cols=118 Identities=16% Similarity=0.123 Sum_probs=62.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC--C-cccc--cce--------------EEEEEcCCCCCH--HHHHHHHHhhcCCCC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNN--H-VKFY--FDC--------------HAWVRVSIAYDF--GKILDDIINPVMPPS 249 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~--~-~~~~--F~~--------------~~wv~vs~~~~~--~~i~~~i~~~l~~~~ 249 (518)
.+++|+|..|.|||||.+.+.... . .... |+. .+++ +.+.+.. .....+++.....
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~-v~q~~~~~~~~~~~~~l~~~~~-- 103 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFL-AFQYPPEIPGVKNADFLRYVNE-- 103 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEE-eecChhhccCccHHHHHhhccc--
Confidence 689999999999999999988752 1 1110 110 0111 1222110 0011111111100
Q ss_pred CCCccccCCHHHHHHHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCCC-CCCcEEEEEecchhhhh
Q 010117 250 RVSVIIGEDYQLKKSILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPDN-QNGSRVLITLLWFELQK 316 (518)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~-~~gskIivTTR~~~va~ 316 (518)
.-..-+...-.+...+..+.=+++||+--. |......+...+..- ..|..||++|.+...+.
T Consensus 104 -----~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 104 -----GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred -----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 111222333456666777778999999866 444444444443321 23667888988877665
No 183
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.01 E-value=0.079 Score=55.17 Aligned_cols=41 Identities=17% Similarity=0.106 Sum_probs=28.6
Q ss_pred hhhhHHHHHHHHhcC-------CCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEG-------PPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
...-.++|+++|... .....++.++|..|+||||.|..+..
T Consensus 74 ~~~v~~eL~~~l~~~~~~~~~~~~~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 74 IKIVHEELVAILGGENASLNLAKKPPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred HHHHHHHHHHHhCCCCcccccCCCCCEEEEEECCCCCcHHHHHHHHHH
Confidence 344455556655432 12367999999999999999877765
No 184
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.00 E-value=0.1 Score=53.27 Aligned_cols=41 Identities=12% Similarity=0.102 Sum_probs=30.3
Q ss_pred cCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEEecch
Q 010117 272 AKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLITLLWF 312 (518)
Q Consensus 272 ~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~ 312 (518)
+.+-++|+|++.. +....+.+...+..-..++.+|++|.+.
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 4567999999987 6777888887776554566677777665
No 185
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.97 E-value=0.079 Score=49.66 Aligned_cols=52 Identities=17% Similarity=0.278 Sum_probs=32.1
Q ss_pred HHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC-CCCCcEEEEEecchhhhh
Q 010117 265 ILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD-NQNGSRVLITLLWFELQK 316 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~-~~~gskIivTTR~~~va~ 316 (518)
.+...+..+.-+++||+--. |...-..+...+.. ...|..||++|.+...+.
T Consensus 138 ~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~ 192 (210)
T cd03269 138 QFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVE 192 (210)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 35555666677999999876 44444444443331 123667888888876543
No 186
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.97 E-value=0.053 Score=55.28 Aligned_cols=86 Identities=17% Similarity=0.076 Sum_probs=49.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCccccc--ceEEEEEcCCCC--CHHHHHHHHHhhcCCCCCCCccccCCHHHHHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYF--DCHAWVRVSIAY--DFGKILDDIINPVMPPSRVSVIIGEDYQLKKSI 265 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F--~~~~wv~vs~~~--~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 265 (518)
-.++.++|+.|+||||++..+... ....+ ..+..++. +.+ ...+-++...+.++.+.. ...+..++...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~--~~~~~G~~~V~lit~-D~~R~ga~EqL~~~a~~~gv~~~----~~~~~~~l~~~ 209 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAAR--CVMRFGASKVALLTT-DSYRIGGHEQLRIFGKILGVPVH----AVKDGGDLQLA 209 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHHhcCCCeEEEEec-ccccccHHHHHHHHHHHcCCceE----ecCCcccHHHH
Confidence 469999999999999999988773 22222 23444543 332 344555555566665443 22223333333
Q ss_pred HHHHhccCcEEEEEcCCCC
Q 010117 266 LQDYLTAKKYFIVLDDVFD 284 (518)
Q Consensus 266 l~~~L~~kr~LlVLDdvw~ 284 (518)
+. .+.++ -+|++|..-.
T Consensus 210 l~-~l~~~-DlVLIDTaG~ 226 (374)
T PRK14722 210 LA-ELRNK-HMVLIDTIGM 226 (374)
T ss_pred HH-HhcCC-CEEEEcCCCC
Confidence 33 34444 4566899865
No 187
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.97 E-value=0.12 Score=48.30 Aligned_cols=52 Identities=15% Similarity=0.097 Sum_probs=33.1
Q ss_pred HHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCCCCCCcEEEEEecchhhhh
Q 010117 265 ILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPDNQNGSRVLITLLWFELQK 316 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~~~gskIivTTR~~~va~ 316 (518)
.+...+..+.=+++||+-.. |....+.+...+.....|..||++|.+...+.
T Consensus 135 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~ 188 (207)
T cd03369 135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTII 188 (207)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence 45555556777899999876 45555555544443233677888888776554
No 188
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.97 E-value=0.076 Score=50.87 Aligned_cols=124 Identities=17% Similarity=0.132 Sum_probs=71.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC-----cc------ccc---ceEEEEEcCCCC------CH----------------
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNH-----VK------FYF---DCHAWVRVSIAY------DF---------------- 234 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~-----~~------~~F---~~~~wv~vs~~~------~~---------------- 234 (518)
.+++|+|+.|.|||||.+.+..--. +. ..+ ..+.||.=...+ ++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 6899999999999999999986211 10 001 124444321111 11
Q ss_pred ------HHHHHHHHhhcCCCCCC-CccccCCHHHHH-HHHHHHhccCcEEEEEcCCCC--ChHH---HHHHhhhcCCCCC
Q 010117 235 ------GKILDDIINPVMPPSRV-SVIIGEDYQLKK-SILQDYLTAKKYFIVLDDVFD--DSEI---WHDLVEFLPDNQN 301 (518)
Q Consensus 235 ------~~i~~~i~~~l~~~~~~-~~~~~~~~~~~~-~~l~~~L~~kr~LlVLDdvw~--~~~~---~~~l~~~l~~~~~ 301 (518)
.+...+.++.++...-. ......+-.+.+ -.|.+.|..+.=||+||.=-. |... .-.+...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 24455566666544321 112344444444 467888999999999998655 3332 33333333332
Q ss_pred CcEEEEEecchhhhh
Q 010117 302 GSRVLITLLWFELQK 316 (518)
Q Consensus 302 gskIivTTR~~~va~ 316 (518)
|+.||++|.+-..+.
T Consensus 189 g~tIl~vtHDL~~v~ 203 (254)
T COG1121 189 GKTVLMVTHDLGLVM 203 (254)
T ss_pred CCEEEEEeCCcHHhH
Confidence 889999999854433
No 189
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.97 E-value=0.042 Score=51.20 Aligned_cols=22 Identities=14% Similarity=-0.058 Sum_probs=20.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
++++|+|+.|.|||||.+.+.-
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999988864
No 190
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.96 E-value=0.088 Score=54.97 Aligned_cols=109 Identities=16% Similarity=-0.029 Sum_probs=54.8
Q ss_pred hhhhHHHHHHHHhcCC------CCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCC-CCCHHHHHHHHHhh
Q 010117 172 FERGREELFDLLIEGP------PRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSI-AYDFGKILDDIINP 244 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~------~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~ 244 (518)
...-.+++++.|.... ....+|.++|..|+||||.|..+... ....-..+.-|+... .+...+.++.+...
T Consensus 71 ~~~v~~~L~~~l~~~~~~~~~~~~p~vI~lvG~~GsGKTTtaakLA~~--L~~~g~kV~lV~~D~~R~aa~eQL~~la~~ 148 (437)
T PRK00771 71 IKIVYEELVKLLGEETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARY--FKKKGLKVGLVAADTYRPAAYDQLKQLAEK 148 (437)
T ss_pred HHHHHHHHHHHhCCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 3444455566554321 34689999999999999999888763 322211233333321 11224445556666
Q ss_pred cCCCCCCCccccCCHHHHHHHHHHHhccCcEEEEEcCCCC
Q 010117 245 VMPPSRVSVIIGEDYQLKKSILQDYLTAKKYFIVLDDVFD 284 (518)
Q Consensus 245 l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~ 284 (518)
++.+.... ....+...+.....+.+.+. =+||+|..-.
T Consensus 149 ~gvp~~~~-~~~~d~~~i~~~al~~~~~~-DvVIIDTAGr 186 (437)
T PRK00771 149 IGVPFYGD-PDNKDAVEIAKEGLEKFKKA-DVIIVDTAGR 186 (437)
T ss_pred cCCcEEec-CCccCHHHHHHHHHHHhhcC-CEEEEECCCc
Confidence 55432210 01223333332222333333 4577777643
No 191
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.95 E-value=0.016 Score=57.48 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=30.8
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHH
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADA 210 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v 210 (518)
|..+..--+++|++++ +..|++.|.+|.|||-||-..
T Consensus 229 rn~eQ~~ALdlLld~d--I~lV~L~G~AGtGKTlLALaA 265 (436)
T COG1875 229 RNAEQRVALDLLLDDD--IDLVSLGGKAGTGKTLLALAA 265 (436)
T ss_pred ccHHHHHHHHHhcCCC--CCeEEeeccCCccHhHHHHHH
Confidence 6666667788888775 899999999999999988654
No 192
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.94 E-value=0.11 Score=48.09 Aligned_cols=126 Identities=12% Similarity=0.107 Sum_probs=74.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEE-------------------cCCCCC-----------------
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVR-------------------VSIAYD----------------- 233 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~-------------------vs~~~~----------------- 233 (518)
-.|++|+|+.|.|||||.+.+..=..... ..+||. |-|.|+
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE~~~~---G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~ 104 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLEEPDS---GSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK 104 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCcCCCC---ceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH
Confidence 35899999999999999998865333222 233332 112222
Q ss_pred --------HHHHHHHHHhhcCCCCCCCc-ccc-CCHHHHHHHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcC-CCC
Q 010117 234 --------FGKILDDIINPVMPPSRVSV-IIG-EDYQLKKSILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLP-DNQ 300 (518)
Q Consensus 234 --------~~~i~~~i~~~l~~~~~~~~-~~~-~~~~~~~~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~-~~~ 300 (518)
.++...++++.++....... |.. +.-++..-.|.+.|.=+.=++.+|..-+ |++.-..+..... -..
T Consensus 105 v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~ 184 (240)
T COG1126 105 VKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE 184 (240)
T ss_pred HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH
Confidence 33445555666555433111 222 2333444567788887888999999977 5555555444333 133
Q ss_pred CCcEEEEEecchhhhhhc
Q 010117 301 NGSRVLITLLWFELQKGE 318 (518)
Q Consensus 301 ~gskIivTTR~~~va~~~ 318 (518)
.|-..||.|..-.-|..+
T Consensus 185 eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 185 EGMTMIIVTHEMGFAREV 202 (240)
T ss_pred cCCeEEEEechhHHHHHh
Confidence 477777778776555443
No 193
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.93 E-value=0.023 Score=56.62 Aligned_cols=92 Identities=17% Similarity=0.095 Sum_probs=57.9
Q ss_pred CCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCC-ccccCCHHHHHH
Q 010117 186 GPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVS-VIIGEDYQLKKS 264 (518)
Q Consensus 186 ~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~-~~~~~~~~~~~~ 264 (518)
+=+.-+++-|+|+.|+||||||.++... ....-..++|+..-..++.. .+++++.....- .....+.++...
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~ 123 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALE 123 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHH
Confidence 4345689999999999999999987763 33333457788776666653 344444332110 012334566666
Q ss_pred HHHHHhc-cCcEEEEEcCCCC
Q 010117 265 ILQDYLT-AKKYFIVLDDVFD 284 (518)
Q Consensus 265 ~l~~~L~-~kr~LlVLDdvw~ 284 (518)
.+...++ +.--+||+|.|-.
T Consensus 124 ~~~~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 124 IAETLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHHHHhhccCCcEEEEcchhh
Confidence 6666554 4566999999863
No 194
>PTZ00301 uridine kinase; Provisional
Probab=95.92 E-value=0.0073 Score=56.67 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
..+|+|.|.+|.||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 57999999999999999998876
No 195
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.92 E-value=0.048 Score=49.41 Aligned_cols=21 Identities=24% Similarity=0.197 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 010117 192 VVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~ 212 (518)
++.++|++|+||||++..+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999988876
No 196
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.92 E-value=0.1 Score=51.15 Aligned_cols=93 Identities=12% Similarity=0.015 Sum_probs=48.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCH--HHHHHHHHhhcCCCCCCCccccCCHHH-HHH
Q 010117 188 PRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDF--GKILDDIINPVMPPSRVSVIIGEDYQL-KKS 264 (518)
Q Consensus 188 ~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~--~~i~~~i~~~l~~~~~~~~~~~~~~~~-~~~ 264 (518)
.+.++|.++|++|+||||++..+... ....-..+.+++.. .+.. .+-+....+..+.+.... ....+... ...
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~-~~~~dp~~~~~~ 145 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQ-KEGADPAAVAFD 145 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeC-CCCCCHHHHHHH
Confidence 35689999999999999988877652 22222234555443 2322 233333444444221100 01122322 223
Q ss_pred HHHHHhccCcEEEEEcCCCC
Q 010117 265 ILQDYLTAKKYFIVLDDVFD 284 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~ 284 (518)
.+........=++++|-.-.
T Consensus 146 ~l~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 146 AIQKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHHHCCCCEEEEeCCCC
Confidence 34444444445788888754
No 197
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.92 E-value=0.053 Score=51.84 Aligned_cols=97 Identities=11% Similarity=0.047 Sum_probs=59.2
Q ss_pred HHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC----------
Q 010117 182 LLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRV---------- 251 (518)
Q Consensus 182 ~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~---------- 251 (518)
+|..+=..-+++.|.|.+|+|||+||.++... .++ .=..++|++...+ ..++++.+ .+++.....
T Consensus 17 ~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~-~~~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~ 91 (234)
T PRK06067 17 KLGGGIPFPSLILIEGDHGTGKSVLSQQFVYG-ALK-QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIF 91 (234)
T ss_pred hhCCCCcCCcEEEEECCCCCChHHHHHHHHHH-HHh-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEE
Confidence 34344345689999999999999999998542 122 2235788888654 34555543 233321110
Q ss_pred ------CccccCCHHHHHHHHHHHhcc-CcEEEEEcCCC
Q 010117 252 ------SVIIGEDYQLKKSILQDYLTA-KKYFIVLDDVF 283 (518)
Q Consensus 252 ------~~~~~~~~~~~~~~l~~~L~~-kr~LlVLDdvw 283 (518)
......+.+++...+.+.+.. +.-++|+|.+-
T Consensus 92 ~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 92 PLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred eccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 001123446677777777764 55589999975
No 198
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.91 E-value=0.042 Score=50.16 Aligned_cols=122 Identities=14% Similarity=0.097 Sum_probs=61.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEE---cCCCC-CHHHHHHHHHhhcCCCCCC-C--cc-c-----cC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVR---VSIAY-DFGKILDDIINPVMPPSRV-S--VI-I-----GE 257 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~---vs~~~-~~~~i~~~i~~~l~~~~~~-~--~~-~-----~~ 257 (518)
.+++|+|..|.|||||++.+..... .....+.+. ++... +.....+.+ .-+...... . .. + -.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~i-~~~~q~~~~~~~~t~~~~l~~~lS 102 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLEE---PDSGSILIDGEDLTDLEDELPPLRRRI-GMVFQDFALFPHLTVLENIALGLS 102 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccchhHHHHhhcE-EEEecCCccCCCCCHHHheeecCC
Confidence 5899999999999999999986321 122333321 11100 011111111 001000000 0 00 0 11
Q ss_pred CHHHHHHHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC--CCCCcEEEEEecchhhhh
Q 010117 258 DYQLKKSILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD--NQNGSRVLITLLWFELQK 316 (518)
Q Consensus 258 ~~~~~~~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~--~~~gskIivTTR~~~va~ 316 (518)
.-+...-.+...+..+.=+++||+--. |......+...+.. ...|..||++|.+.....
T Consensus 103 ~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 103 GGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 112223345666667778999999766 45555555544432 112567888888765543
No 199
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.90 E-value=0.087 Score=57.32 Aligned_cols=40 Identities=15% Similarity=-0.001 Sum_probs=31.3
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+..++.|.+.+..+. -..-+-++|+.|+||||+|+.+.+
T Consensus 29 q~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk 68 (598)
T PRK09111 29 QEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILAR 68 (598)
T ss_pred cHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 6666777777776553 234688899999999999999887
No 200
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.87 E-value=0.096 Score=49.46 Aligned_cols=52 Identities=13% Similarity=0.210 Sum_probs=32.6
Q ss_pred HHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCCCCCCcEEEEEecchhhhh
Q 010117 265 ILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPDNQNGSRVLITLLWFELQK 316 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~~~gskIivTTR~~~va~ 316 (518)
.+...+..+.-+|+||+--. |......+...+..-..+..||++|.+...+.
T Consensus 143 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~ 196 (220)
T cd03263 143 SLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAE 196 (220)
T ss_pred HHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence 35555666778999999876 45544455444432222466888888876554
No 201
>PHA02244 ATPase-like protein
Probab=95.87 E-value=0.068 Score=54.05 Aligned_cols=38 Identities=11% Similarity=0.120 Sum_probs=29.4
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.......+..++..+ .-|.|+|+.|+|||+||+.+.+.
T Consensus 105 ~~~~~~ri~r~l~~~----~PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 105 FHYETADIAKIVNAN----IPVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred HHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHH
Confidence 555666777777654 23677999999999999999983
No 202
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.86 E-value=0.11 Score=48.32 Aligned_cols=55 Identities=16% Similarity=0.116 Sum_probs=34.2
Q ss_pred HHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC-CCCCcEEEEEecchhhhhhc
Q 010117 264 SILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD-NQNGSRVLITLLWFELQKGE 318 (518)
Q Consensus 264 ~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~-~~~gskIivTTR~~~va~~~ 318 (518)
-.+...+..+.-+++||+--. |...-..+...+.. ...|..||+||.+..-...+
T Consensus 136 v~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~ 193 (200)
T PRK13540 136 VALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKA 193 (200)
T ss_pred HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhcccc
Confidence 345556666777999999866 44444444444432 12367799999887655443
No 203
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.84 E-value=0.0073 Score=53.07 Aligned_cols=31 Identities=10% Similarity=0.120 Sum_probs=24.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccc-cce
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFY-FDC 222 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~-F~~ 222 (518)
..-|.|.|++|+|||||++.+.+ ..++. |..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e--~L~~~g~kv 36 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAE--KLREKGYKV 36 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHH--HHHhcCcee
Confidence 35689999999999999999987 44433 543
No 204
>PRK10867 signal recognition particle protein; Provisional
Probab=95.83 E-value=0.054 Score=56.39 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=28.3
Q ss_pred hhhhHHHHHHHHhcC-------CCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEG-------PPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
+.--.+++.+.|... .....+|.++|.+|+||||.+..+..
T Consensus 75 ~~~v~~el~~~l~~~~~~~~~~~~~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 75 IKIVNDELVEILGGENSELNLAAKPPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred HHHHHHHHHHHhCCCcceeeecCCCCEEEEEECCCCCcHHHHHHHHHH
Confidence 444555666666432 23468999999999999997666554
No 205
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.83 E-value=0.12 Score=47.01 Aligned_cols=126 Identities=13% Similarity=0.135 Sum_probs=76.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEE---------------------cCCCC----------------
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVR---------------------VSIAY---------------- 232 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~---------------------vs~~~---------------- 232 (518)
-..+-++|+.|.|||||.+.+|...+-.. ..+|+. |-|+|
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~pt~---G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL 104 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEERPTR---GKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPL 104 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhcCCC---ceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhh
Confidence 35789999999999999999998544322 223331 11111
Q ss_pred --------CHHHHHHHHHhhcCCCCCC-Ccc-ccCCHHHHHHHHHHHhccCcEEEEEcCCCC--C-hHHHHHHhhhcCCC
Q 010117 233 --------DFGKILDDIINPVMPPSRV-SVI-IGEDYQLKKSILQDYLTAKKYFIVLDDVFD--D-SEIWHDLVEFLPDN 299 (518)
Q Consensus 233 --------~~~~i~~~i~~~l~~~~~~-~~~-~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~--~-~~~~~~l~~~l~~~ 299 (518)
++.+-..+.++..+..... ..| .-+.-++..-.+.+.+-++.-+|+-|.=-- | .-.|+-+...-.-+
T Consensus 105 ~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein 184 (223)
T COG2884 105 RVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN 184 (223)
T ss_pred hccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh
Confidence 1222233334444433221 112 334455556678888889999999887433 2 34454443333346
Q ss_pred CCCcEEEEEecchhhhhhc
Q 010117 300 QNGSRVLITLLWFELQKGE 318 (518)
Q Consensus 300 ~~gskIivTTR~~~va~~~ 318 (518)
..|..||++|.+.++...+
T Consensus 185 r~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 185 RLGTTVLMATHDLELVNRM 203 (223)
T ss_pred hcCcEEEEEeccHHHHHhc
Confidence 6799999999999988876
No 206
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.82 E-value=0.13 Score=48.42 Aligned_cols=53 Identities=15% Similarity=0.083 Sum_probs=32.2
Q ss_pred HHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC-CCCCcEEEEEecchhhhh
Q 010117 264 SILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD-NQNGSRVLITLLWFELQK 316 (518)
Q Consensus 264 ~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~-~~~gskIivTTR~~~va~ 316 (518)
-.+...+-.+.-+++||.--. |......+...+.. ...|..||++|.+...+.
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 201 (214)
T PRK13543 146 LALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAP 201 (214)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhh
Confidence 345555556667999999866 44444444444431 123567888988876543
No 207
>PRK09354 recA recombinase A; Provisional
Probab=95.78 E-value=0.04 Score=55.51 Aligned_cols=92 Identities=18% Similarity=0.101 Sum_probs=59.4
Q ss_pred CCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCC-ccccCCHHHHHH
Q 010117 186 GPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVS-VIIGEDYQLKKS 264 (518)
Q Consensus 186 ~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~-~~~~~~~~~~~~ 264 (518)
+=+.-+++-|+|+.|+||||||.++... ....-..++||..-..++.. .++.++.....- .....+.++...
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~ 128 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALE 128 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHH
Confidence 4345679999999999999999988763 33334567899887777753 344444332110 012334566666
Q ss_pred HHHHHhcc-CcEEEEEcCCCC
Q 010117 265 ILQDYLTA-KKYFIVLDDVFD 284 (518)
Q Consensus 265 ~l~~~L~~-kr~LlVLDdvw~ 284 (518)
.+...++. +--|||+|-|-.
T Consensus 129 i~~~li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 129 IADTLVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HHHHHhhcCCCCEEEEeChhh
Confidence 66666543 566999999864
No 208
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.78 E-value=0.074 Score=49.98 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=21.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.+++|+|..|.|||||++.+..-
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 58999999999999999998764
No 209
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.77 E-value=0.1 Score=55.85 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.+-+.++|++|+|||+||+.+.+.
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 345889999999999999999984
No 210
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.77 E-value=0.034 Score=52.67 Aligned_cols=74 Identities=11% Similarity=-0.085 Sum_probs=40.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCcccc-c-ceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHH
Q 010117 192 VVAILDSSGFEMTAFAADAFNNNHVKFY-F-DCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDY 269 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~d~~~~~~-F-~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 269 (518)
+|+|.|..|+||||||+.+.. .+... . ..+..++...-+.....+.... .+... ..+...+.+.+...|...
T Consensus 1 IigI~G~sGSGKTTla~~L~~--~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~-~~~~~---g~p~~~d~~~l~~~L~~l 74 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA--LLSRWPDHPNVELITTDGFLYPNKELIERG-LMDRK---GFPESYDMEALLKFLKDI 74 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH--HHhhcCCCCcEEEEecCcccCcHHHHHHhh-hhhcC---CCcccCCHHHHHHHHHHH
Confidence 589999999999999999987 33210 1 1234454444333333222211 11111 113555666666666666
Q ss_pred hc
Q 010117 270 LT 271 (518)
Q Consensus 270 L~ 271 (518)
..
T Consensus 75 ~~ 76 (220)
T cd02025 75 KS 76 (220)
T ss_pred HC
Confidence 55
No 211
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.76 E-value=0.03 Score=62.54 Aligned_cols=93 Identities=10% Similarity=0.156 Sum_probs=50.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDY 269 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 269 (518)
...+.++|+.|+|||+||+.+... .... .+.+..+.-.+... ...+ ++.+... ...... ..+.+.
T Consensus 488 ~~~~Lf~GP~GvGKT~lAk~LA~~--l~~~---~i~id~se~~~~~~-~~~L---iG~~~gy--vg~~~~----g~L~~~ 552 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVTVQLSKA--LGIE---LLRFDMSEYMERHT-VSRL---IGAPPGY--VGFDQG----GLLTDA 552 (758)
T ss_pred cceEEEECCCCCCHHHHHHHHHHH--hCCC---cEEeechhhccccc-HHHH---cCCCCCc--cccccc----chHHHH
Confidence 457889999999999999999873 3222 23334333221111 1111 2221110 011111 123333
Q ss_pred hcc-CcEEEEEcCCCC-ChHHHHHHhhhcC
Q 010117 270 LTA-KKYFIVLDDVFD-DSEIWHDLVEFLP 297 (518)
Q Consensus 270 L~~-kr~LlVLDdvw~-~~~~~~~l~~~l~ 297 (518)
++. ...+|+||++.. .++.++.+...+.
T Consensus 553 v~~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 553 VIKHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred HHhCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 433 346999999988 5777888877664
No 212
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.75 E-value=0.067 Score=48.98 Aligned_cols=50 Identities=16% Similarity=0.298 Sum_probs=32.3
Q ss_pred HHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC-CCCCcEEEEEecchhh
Q 010117 265 ILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD-NQNGSRVLITLLWFEL 314 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~-~~~gskIivTTR~~~v 314 (518)
.+...+-.+.-+++||+--. |......+...+.. ...|..||++|.+..-
T Consensus 114 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 166 (182)
T cd03215 114 VLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDE 166 (182)
T ss_pred HHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 45566667778999999866 45555555444432 1236778999888643
No 213
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.74 E-value=0.13 Score=49.18 Aligned_cols=54 Identities=15% Similarity=0.158 Sum_probs=34.5
Q ss_pred HHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCCC--CCCcEEEEEecchhhhhhc
Q 010117 265 ILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPDN--QNGSRVLITLLWFELQKGE 318 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~--~~gskIivTTR~~~va~~~ 318 (518)
.+...+..+.-+++||+--. |......+...+..- ..|..||++|.+...+..+
T Consensus 142 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~ 199 (236)
T TIGR03864 142 EIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEAD 199 (236)
T ss_pred HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhC
Confidence 45566666778999999876 455555555544421 2366788888887655433
No 214
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.74 E-value=0.071 Score=52.53 Aligned_cols=80 Identities=10% Similarity=-0.035 Sum_probs=46.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHcCCCccccc--ceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHH
Q 010117 188 PRLSVVAILDSSGFEMTAFAADAFNNNHVKFYF--DCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSI 265 (518)
Q Consensus 188 ~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F--~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 265 (518)
....+|+|.|..|+||||+|+.+.. ...... ..+..++...-......+.. .+.......+...+...+...
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~--ll~~~~~~g~V~vi~~D~f~~~~~~l~~----~g~~~~~g~P~s~D~~~l~~~ 133 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA--LLSRWPEHRKVELITTDGFLHPNQVLKE----RNLMKKKGFPESYDMHRLVKF 133 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHhhcCCCCceEEEecccccccHHHHHH----cCCccccCCChhccHHHHHHH
Confidence 4578999999999999999987654 222111 12344444443333333332 221111123466777888777
Q ss_pred HHHHhccC
Q 010117 266 LQDYLTAK 273 (518)
Q Consensus 266 l~~~L~~k 273 (518)
+.....|+
T Consensus 134 L~~Lk~g~ 141 (290)
T TIGR00554 134 LSDLKSGK 141 (290)
T ss_pred HHHHHCCC
Confidence 77776665
No 215
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.71 E-value=0.078 Score=48.72 Aligned_cols=121 Identities=13% Similarity=0.125 Sum_probs=60.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHHhc
Q 010117 192 VVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDYLT 271 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~ 271 (518)
++.|.|..|.||||+.+.+.-.. +..+-.+ +|.... +. -.....++..++...... ........-...+...+.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~-~la~~G~--~v~a~~-~~-~~~~d~il~~~~~~d~~~-~~~s~fs~~~~~l~~~l~ 74 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIV-IMAQIGS--FVPAES-AE-LPVFDRIFTRIGASDSLA-QGLSTFMVEMKETANILK 74 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHH-HHHHhCC--Ceeehh-eE-ecccceEEEEeCCCCchh-ccccHHHHHHHHHHHHHH
Confidence 46799999999999999887321 1111111 111110 00 001111222222211100 011122222334555555
Q ss_pred c--CcEEEEEcCCCC--ChHHH----HHHhhhcCCCCCCcEEEEEecchhhhhhcc
Q 010117 272 A--KKYFIVLDDVFD--DSEIW----HDLVEFLPDNQNGSRVLITLLWFELQKGEK 319 (518)
Q Consensus 272 ~--kr~LlVLDdvw~--~~~~~----~~l~~~l~~~~~gskIivTTR~~~va~~~~ 319 (518)
. ++-|+++|..-. ++..- ..+...+.. ..|+.+|++|...++...+.
T Consensus 75 ~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~~ 129 (185)
T smart00534 75 NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLAD 129 (185)
T ss_pred hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHhh
Confidence 4 889999999876 33222 222222322 23678999999988877653
No 216
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.71 E-value=0.0088 Score=56.15 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
+..+|+|.|.+|+||||||+.+...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999883
No 217
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.69 E-value=0.0079 Score=51.23 Aligned_cols=20 Identities=20% Similarity=0.202 Sum_probs=18.9
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q 010117 193 VAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 193 i~I~G~gGvGKTtLA~~v~~ 212 (518)
|.|.|..|+||||+|+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAE 20 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999988
No 218
>PTZ00035 Rad51 protein; Provisional
Probab=95.68 E-value=0.073 Score=53.79 Aligned_cols=103 Identities=9% Similarity=0.024 Sum_probs=59.9
Q ss_pred HHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCccc----ccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC--C--
Q 010117 181 DLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKF----YFDCHAWVRVSIAYDFGKILDDIINPVMPPSRV--S-- 252 (518)
Q Consensus 181 ~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~--~-- 252 (518)
++|..+=..-.++.|+|..|+|||||+..+.-...... .=..++|++....|+..++ .++++.++..... .
T Consensus 109 ~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI 187 (337)
T PTZ00035 109 KLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNI 187 (337)
T ss_pred HHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhce
Confidence 34444434568999999999999999998875322211 1124679988887887774 3445554433210 0
Q ss_pred -ccccCCHHHHHHHH---HHHhc-cCcEEEEEcCCCC
Q 010117 253 -VIIGEDYQLKKSIL---QDYLT-AKKYFIVLDDVFD 284 (518)
Q Consensus 253 -~~~~~~~~~~~~~l---~~~L~-~kr~LlVLDdvw~ 284 (518)
-....+.+++...+ ...+. ++--|||+|-+..
T Consensus 188 ~~~~~~~~e~~~~~l~~~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 188 AYARAYNHEHQMQLLSQAAAKMAEERFALLIVDSATA 224 (337)
T ss_pred EEEccCCHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 00223334443333 33332 3556999999864
No 219
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.68 E-value=0.11 Score=48.72 Aligned_cols=52 Identities=19% Similarity=0.207 Sum_probs=32.6
Q ss_pred HHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCCC--CCCcEEEEEecchhhh
Q 010117 264 SILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPDN--QNGSRVLITLLWFELQ 315 (518)
Q Consensus 264 ~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~--~~gskIivTTR~~~va 315 (518)
-.+...|..+.-+++||.--. |...-..+...+..- ..|..||++|.+...+
T Consensus 139 l~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~ 194 (213)
T cd03259 139 VALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEA 194 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHH
Confidence 345566667778999999866 444444454444321 1366788888876543
No 220
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.67 E-value=0.074 Score=53.71 Aligned_cols=103 Identities=8% Similarity=0.047 Sum_probs=62.5
Q ss_pred HHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccc----cceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC--Cc-
Q 010117 181 DLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFY----FDCHAWVRVSIAYDFGKILDDIINPVMPPSRV--SV- 253 (518)
Q Consensus 181 ~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~----F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~--~~- 253 (518)
++|..+=..-.++-|.|.+|+|||+|+..++-....... -..++|++.-..|++.++. +|++.++..... ..
T Consensus 114 ~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~~~~~l~~i 192 (342)
T PLN03186 114 KILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLNGADVLENV 192 (342)
T ss_pred HhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCChhhhccce
Confidence 344444345688899999999999999887743222111 1268999999999988764 556665543211 00
Q ss_pred --cccCCHHHHHHHHH---HHh-ccCcEEEEEcCCCC
Q 010117 254 --IIGEDYQLKKSILQ---DYL-TAKKYFIVLDDVFD 284 (518)
Q Consensus 254 --~~~~~~~~~~~~l~---~~L-~~kr~LlVLDdvw~ 284 (518)
....+.+.+...+. ..+ ..+--|||+|-+-.
T Consensus 193 ~~~~~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~a 229 (342)
T PLN03186 193 AYARAYNTDHQSELLLEAASMMAETRFALMIVDSATA 229 (342)
T ss_pred EEEecCCHHHHHHHHHHHHHHhhccCCCEEEEeCcHH
Confidence 12233444433332 333 33556999999854
No 221
>PRK08233 hypothetical protein; Provisional
Probab=95.67 E-value=0.0094 Score=54.38 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
..+|+|.|.+|+||||||+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999873
No 222
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.66 E-value=0.12 Score=56.18 Aligned_cols=40 Identities=15% Similarity=0.027 Sum_probs=29.9
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
-+..++.|.+.+..+. -...+-++|+.|+||||+|+.+.+
T Consensus 21 q~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak 60 (576)
T PRK14965 21 QEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAK 60 (576)
T ss_pred cHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4555667777776552 235568899999999999998876
No 223
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.64 E-value=0.12 Score=48.76 Aligned_cols=23 Identities=17% Similarity=0.066 Sum_probs=21.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.+++|+|..|.|||||.+.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999864
No 224
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.64 E-value=0.17 Score=47.70 Aligned_cols=23 Identities=13% Similarity=0.075 Sum_probs=21.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.+++|+|..|.|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999863
No 225
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.61 E-value=0.033 Score=63.32 Aligned_cols=39 Identities=18% Similarity=0.171 Sum_probs=33.1
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
|+++.+++++.|.... ..-+.++|++|+|||++|+.+..
T Consensus 184 r~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~ 222 (821)
T CHL00095 184 REKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQ 222 (821)
T ss_pred cHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHH
Confidence 9999999999997653 23456999999999999998877
No 226
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=95.61 E-value=0.045 Score=51.22 Aligned_cols=54 Identities=17% Similarity=0.206 Sum_probs=34.7
Q ss_pred HHHHHhccCcEEEEEcCCCC--ChHHHH-HHhhhcCCCC-C-CcEEEEEecchhhhhhc
Q 010117 265 ILQDYLTAKKYFIVLDDVFD--DSEIWH-DLVEFLPDNQ-N-GSRVLITLLWFELQKGE 318 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~--~~~~~~-~l~~~l~~~~-~-gskIivTTR~~~va~~~ 318 (518)
.+...+..+.-+++||+.-. |..... .+...+..-. . |..||++|.+......+
T Consensus 131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~ 189 (204)
T cd03240 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAA 189 (204)
T ss_pred HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhC
Confidence 35566777888999999876 444444 4544443221 2 56688898887765543
No 227
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.61 E-value=0.16 Score=49.38 Aligned_cols=125 Identities=12% Similarity=0.027 Sum_probs=63.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCc-cc--ccc---------eEEEEEcCCC----CCHH------------HHHHHHH
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHV-KF--YFD---------CHAWVRVSIA----YDFG------------KILDDII 242 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~-~~--~F~---------~~~wv~vs~~----~~~~------------~i~~~i~ 242 (518)
.+++|+|..|.|||||.+.+..-... .. .|+ .+.++.-... .++. .-..+++
T Consensus 39 e~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l 118 (257)
T PRK11247 39 QFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQAL 118 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHH
Confidence 58999999999999999999863211 11 111 1222221110 1111 1123344
Q ss_pred hhcCCCCC-CCccccCCHHH-HHHHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC--CCCCcEEEEEecchhhh
Q 010117 243 NPVMPPSR-VSVIIGEDYQL-KKSILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD--NQNGSRVLITLLWFELQ 315 (518)
Q Consensus 243 ~~l~~~~~-~~~~~~~~~~~-~~~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~--~~~gskIivTTR~~~va 315 (518)
+.++.... ...+...+..+ ..-.+...|..+.=+++||.--. |...-..+...+.. ...|..||++|.+...+
T Consensus 119 ~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~ 197 (257)
T PRK11247 119 AAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEA 197 (257)
T ss_pred HHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 44443221 00112222222 22345555556677899999866 44444444444332 12356788888886654
No 228
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.60 E-value=0.089 Score=48.04 Aligned_cols=21 Identities=24% Similarity=0.234 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 010117 192 VVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~ 212 (518)
||.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999887
No 229
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.60 E-value=0.14 Score=51.60 Aligned_cols=41 Identities=7% Similarity=0.102 Sum_probs=29.1
Q ss_pred cCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEEecch
Q 010117 272 AKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLITLLWF 312 (518)
Q Consensus 272 ~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~ 312 (518)
+++-.+|+|++.. +....+.+...+..-..++.+|+||.+.
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~ 146 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQP 146 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECCh
Confidence 3444557799987 6778888887776555567777777765
No 230
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.60 E-value=0.069 Score=53.45 Aligned_cols=103 Identities=10% Similarity=0.060 Sum_probs=59.9
Q ss_pred HHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccc----cceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC--Cc-
Q 010117 181 DLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFY----FDCHAWVRVSIAYDFGKILDDIINPVMPPSRV--SV- 253 (518)
Q Consensus 181 ~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~----F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~--~~- 253 (518)
.+|..+=..-.++-|+|.+|+||||++.+++........ =..++||+.-..|+..++. ++++.++..... ..
T Consensus 86 ~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl~~~~~~~~i 164 (310)
T TIGR02236 86 ELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGLDPDEVLKNI 164 (310)
T ss_pred HHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhhce
Confidence 334434345688999999999999999988764322111 1268999999888887765 344444432110 00
Q ss_pred --cccCCH---HHHHHHHHHHhccC---cEEEEEcCCCC
Q 010117 254 --IIGEDY---QLKKSILQDYLTAK---KYFIVLDDVFD 284 (518)
Q Consensus 254 --~~~~~~---~~~~~~l~~~L~~k---r~LlVLDdvw~ 284 (518)
....+. ..+...+.+.+... --+||+|.+-.
T Consensus 165 ~i~~~~~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa 203 (310)
T TIGR02236 165 YVARAYNSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTS 203 (310)
T ss_pred EEEecCCHHHHHHHHHHHHHHHHhcCCCceEEEEecchH
Confidence 011111 12334455555432 34899998854
No 231
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.60 E-value=0.13 Score=53.82 Aligned_cols=88 Identities=16% Similarity=0.082 Sum_probs=46.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCC--HHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYD--FGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQ 267 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~--~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 267 (518)
-+++.++|++|+||||++..+.........-..+..|+... +. ..+-++...+.++.+.. ...+..++...+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~-~r~~a~eqL~~~a~~~~vp~~----~~~~~~~l~~~l~ 295 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT-YRIGAVEQLKTYAKIMGIPVE----VVYDPKELAKALE 295 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc-cHHHHHHHHHHHHHHhCCceE----ccCCHHhHHHHHH
Confidence 36999999999999998877765211012223355565432 21 12223333333443332 2233445555554
Q ss_pred HHhccCcEEEEEcCCCC
Q 010117 268 DYLTAKKYFIVLDDVFD 284 (518)
Q Consensus 268 ~~L~~kr~LlVLDdvw~ 284 (518)
+. . ..=+|++|..-.
T Consensus 296 ~~-~-~~DlVlIDt~G~ 310 (424)
T PRK05703 296 QL-R-DCDVILIDTAGR 310 (424)
T ss_pred Hh-C-CCCEEEEeCCCC
Confidence 32 2 245788886633
No 232
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.59 E-value=0.16 Score=49.36 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=32.4
Q ss_pred HHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC--CCCCcEEEEEecchhhhh
Q 010117 265 ILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD--NQNGSRVLITLLWFELQK 316 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~--~~~gskIivTTR~~~va~ 316 (518)
.+...+..+.-+|+||.--. |...-..+...+.. ...|..||++|.+...+.
T Consensus 138 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~ 193 (255)
T PRK11248 138 GIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAV 193 (255)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 45555666778999999866 44444444444332 123667888888876554
No 233
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=95.59 E-value=0.13 Score=48.75 Aligned_cols=52 Identities=15% Similarity=0.195 Sum_probs=32.9
Q ss_pred HHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC-CCCCcEEEEEecchhhhh
Q 010117 265 ILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD-NQNGSRVLITLLWFELQK 316 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~-~~~gskIivTTR~~~va~ 316 (518)
.+...+-.+.-+++||+--. |......+...+.. ...|..||++|.+...+.
T Consensus 134 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~ 188 (223)
T TIGR03740 134 GIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQ 188 (223)
T ss_pred HHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 35555666778999999866 44444444444432 123667999998876554
No 234
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.58 E-value=0.094 Score=47.58 Aligned_cols=24 Identities=25% Similarity=0.059 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.-.+|.|+|++|+||||+|+.+..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~ 26 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAE 26 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999987
No 235
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.57 E-value=0.057 Score=55.35 Aligned_cols=100 Identities=13% Similarity=0.126 Sum_probs=58.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHH
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQD 268 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 268 (518)
....+-|+|..|.|||.|++.+.| ....+.....-++++. .......+..+... -.+.+++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~s----e~f~~~~v~a~~~~-------------~~~~Fk~ 172 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLTS----EDFTNDFVKALRDN-------------EMEKFKE 172 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEeccH----HHHHHHHHHHHHhh-------------hHHHHHH
Confidence 578899999999999999999999 6666655333344333 33333333332221 1233444
Q ss_pred HhccCcEEEEEcCCCC--Ch----HHHHHHhhhcCCCCCCcEEEEEecc
Q 010117 269 YLTAKKYFIVLDDVFD--DS----EIWHDLVEFLPDNQNGSRVLITLLW 311 (518)
Q Consensus 269 ~L~~kr~LlVLDdvw~--~~----~~~~~l~~~l~~~~~gskIivTTR~ 311 (518)
.. .-=++++||++- .. +..-.+...+... |-.||+|++.
T Consensus 173 ~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~--~kqIvltsdr 217 (408)
T COG0593 173 KY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLEN--GKQIVLTSDR 217 (408)
T ss_pred hh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhc--CCEEEEEcCC
Confidence 44 333888999976 11 2222223333333 3388888863
No 236
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.56 E-value=0.17 Score=47.75 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=21.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.+++|+|..|.|||||.+.+..-
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999864
No 237
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.54 E-value=0.13 Score=48.54 Aligned_cols=54 Identities=19% Similarity=0.137 Sum_probs=32.5
Q ss_pred HHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCCCCCCcEEEEEecchhhhhhc
Q 010117 265 ILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPDNQNGSRVLITLLWFELQKGE 318 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~~~gskIivTTR~~~va~~~ 318 (518)
.+...+..+.-+++||+... |......+...+..-..+..||++|.+......+
T Consensus 149 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~ 204 (221)
T cd03244 149 CLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDS 204 (221)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhC
Confidence 34555556667999999876 4444444444443222345688888876554433
No 238
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.53 E-value=0.011 Score=55.39 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.-.+|+|+|++|+||||||+.+...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999873
No 239
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.52 E-value=0.1 Score=50.30 Aligned_cols=127 Identities=12% Similarity=0.059 Sum_probs=66.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcc-c--ccce--EEEEEcC----CCCCHHHHH--------------HHHHhhcCC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVK-F--YFDC--HAWVRVS----IAYDFGKIL--------------DDIINPVMP 247 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~-~--~F~~--~~wv~vs----~~~~~~~i~--------------~~i~~~l~~ 247 (518)
.+++|+|..|+|||||.+.+.....-. . .|+. +.++.-. ...++.+.+ .++++.++.
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l 105 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQI 105 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCC
Confidence 589999999999999999998742111 1 1221 1222110 011232222 223333332
Q ss_pred CCCC-CccccCCHHH-HHHHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC--CCCCcEEEEEecchhhhhh
Q 010117 248 PSRV-SVIIGEDYQL-KKSILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD--NQNGSRVLITLLWFELQKG 317 (518)
Q Consensus 248 ~~~~-~~~~~~~~~~-~~~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~--~~~gskIivTTR~~~va~~ 317 (518)
.... ..+...+..+ ..-.+...|..+.=+++||.--. |...-..+...+.. ...|..||++|.+...+..
T Consensus 106 ~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~ 181 (246)
T cd03237 106 EQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDY 181 (246)
T ss_pred HHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 2110 0112222222 23346666777788999999866 44444444443332 1236678999988765543
No 240
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.51 E-value=0.11 Score=48.10 Aligned_cols=117 Identities=11% Similarity=0.051 Sum_probs=61.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEE---------------EcCCCCC---HHHHHHHHHhhcCCCCCC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWV---------------RVSIAYD---FGKILDDIINPVMPPSRV 251 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv---------------~vs~~~~---~~~i~~~i~~~l~~~~~~ 251 (518)
-.+++|+|..|.|||||.+.+..-.. .......+++ .+.+.+. ...+...+.-.....
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~~-~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~--- 110 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRRT-GLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR--- 110 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC-CCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc---
Confidence 36899999999999999999987320 0111122211 1122211 012222221100000
Q ss_pred CccccCCHHHHHHHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC-CCCCcEEEEEecchh
Q 010117 252 SVIIGEDYQLKKSILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD-NQNGSRVLITLLWFE 313 (518)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~-~~~gskIivTTR~~~ 313 (518)
.-..-+...-.+...+..+.-+++||+--. |......+...+.. ...|..||++|.+..
T Consensus 111 ---~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 111 ---GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred ---cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 011122223345666666778999999876 45555555554442 123777888888753
No 241
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=95.51 E-value=0.2 Score=47.45 Aligned_cols=52 Identities=15% Similarity=0.196 Sum_probs=32.6
Q ss_pred HHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC-CCCCcEEEEEecchhhhh
Q 010117 265 ILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD-NQNGSRVLITLLWFELQK 316 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~-~~~gskIivTTR~~~va~ 316 (518)
.+...+-.+.-+++||+--. |......+...+.. ...|..||++|.+...+.
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~ 213 (224)
T TIGR02324 159 NIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRE 213 (224)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 34455555667999999866 45544555444432 123677899988876554
No 242
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.50 E-value=0.025 Score=49.32 Aligned_cols=85 Identities=16% Similarity=0.122 Sum_probs=49.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCc-ccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHH
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHV-KFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDY 269 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~-~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 269 (518)
.-|.|.|..|+||+++|+.++....- ...|...- . ...+ .+.+..
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~---------~--------------------~~~~----~~~l~~- 67 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANGPFIVID---------C--------------------ASLP----AELLEQ- 67 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCC---------H--------------------HCTC----HHHHHH-
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEec---------h--------------------hhCc----HHHHHH-
Confidence 56789999999999999999985322 12221100 0 0011 111111
Q ss_pred hccCcEEEEEcCCCC-ChHHHHHHhhhcCC-CCCCcEEEEEecc
Q 010117 270 LTAKKYFIVLDDVFD-DSEIWHDLVEFLPD-NQNGSRVLITLLW 311 (518)
Q Consensus 270 L~~kr~LlVLDdvw~-~~~~~~~l~~~l~~-~~~gskIivTTR~ 311 (518)
.+.--|+|+|+.. .......+...+.. .....|+|.||+.
T Consensus 68 --a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 68 --AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp --CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC
T ss_pred --cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 1444577999987 45566666655552 2557899999884
No 243
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.49 E-value=0.22 Score=50.69 Aligned_cols=104 Identities=15% Similarity=0.072 Sum_probs=58.0
Q ss_pred CceEEEEEcCCCccHHH-HHHHHHcCCCcccccceEEEEEcCCC-CCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHH
Q 010117 189 RLSVVAILDSSGFEMTA-FAADAFNNNHVKFYFDCHAWVRVSIA-YDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSIL 266 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTt-LA~~v~~d~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 266 (518)
+-+||.+||+.|+|||| ||+..+.-....+ =.-+..|+...- ....+-++.-.+-++.+-. ...+..++...+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~-~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~----vv~~~~el~~ai 276 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKK-KKKVAIITTDTYRIGAVEQLKTYADIMGVPLE----VVYSPKELAEAI 276 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhcc-CcceEEEEeccchhhHHHHHHHHHHHhCCceE----EecCHHHHHHHH
Confidence 36899999999999987 7777665210111 123555554332 1233334444444555544 444555655555
Q ss_pred HHHhccCcEEEEEcCCCC---ChHHHHHHhhhcCCC
Q 010117 267 QDYLTAKKYFIVLDDVFD---DSEIWHDLVEFLPDN 299 (518)
Q Consensus 267 ~~~L~~kr~LlVLDdvw~---~~~~~~~l~~~l~~~ 299 (518)
... ++. =+|.+|-+.. |......+...+...
T Consensus 277 ~~l-~~~-d~ILVDTaGrs~~D~~~i~el~~~~~~~ 310 (407)
T COG1419 277 EAL-RDC-DVILVDTAGRSQYDKEKIEELKELIDVS 310 (407)
T ss_pred HHh-hcC-CEEEEeCCCCCccCHHHHHHHHHHHhcc
Confidence 443 233 3556677755 356666666666543
No 244
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.48 E-value=0.026 Score=56.70 Aligned_cols=42 Identities=7% Similarity=0.067 Sum_probs=30.0
Q ss_pred hhhhHHHHHHHHhc--CCCCceEEEEEcCCCccHHHHHHHHHcC
Q 010117 172 FERGREELFDLLIE--GPPRLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 172 r~~~~~~l~~~L~~--~~~~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.+...-.|.+-.+. +-.....++|+|+.|+|||.+|+.+++.
T Consensus 128 ~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 128 MDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred HHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 45444444443332 1235688999999999999999999994
No 245
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=95.48 E-value=0.21 Score=47.84 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=34.0
Q ss_pred HHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC--CCCCcEEEEEecchhhhh
Q 010117 265 ILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD--NQNGSRVLITLLWFELQK 316 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~--~~~gskIivTTR~~~va~ 316 (518)
.+...+..+.=+++||+--. |...-..+...+.. ...|..||++|.+...+.
T Consensus 163 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 218 (236)
T cd03267 163 EIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIE 218 (236)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 45566666777999999876 45555555544432 223667999998876544
No 246
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.47 E-value=0.13 Score=48.76 Aligned_cols=24 Identities=4% Similarity=-0.021 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
-.+++|+|..|.|||||++.+...
T Consensus 48 Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 48 GERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999874
No 247
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.46 E-value=0.047 Score=51.25 Aligned_cols=21 Identities=14% Similarity=0.134 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 010117 192 VVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~ 212 (518)
+++|+|..|.|||||++.+..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhC
Confidence 899999999999999999985
No 248
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.45 E-value=0.046 Score=56.61 Aligned_cols=91 Identities=9% Similarity=0.086 Sum_probs=54.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCC-HHHHHHHHHhhcCCCCCC---CccccCCH-----H
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYD-FGKILDDIINPVMPPSRV---SVIIGEDY-----Q 260 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~~l~~~~~~---~~~~~~~~-----~ 260 (518)
-..++|+|..|+|||||++.+.+.. . .+.++.+-+++... +.++..+++..-+..... ...+.... .
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~--~--~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT--T--ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC--C--CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 3679999999999999999998732 1 24566677776654 455666655442211110 00011111 1
Q ss_pred HHHHHHHHHh--ccCcEEEEEcCCCC
Q 010117 261 LKKSILQDYL--TAKKYFIVLDDVFD 284 (518)
Q Consensus 261 ~~~~~l~~~L--~~kr~LlVLDdvw~ 284 (518)
...-.+.+++ +|++.||++||+-.
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 1223355555 57999999999854
No 249
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.45 E-value=0.12 Score=57.11 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
-.||.++|+.|+||||.+..+..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 47999999999999998887776
No 250
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.45 E-value=0.032 Score=52.20 Aligned_cols=125 Identities=9% Similarity=0.020 Sum_probs=63.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDY 269 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 269 (518)
-.++.|.|+.|.||||+.+.+.... +. ..+..+|.... .. -.+...|+..++....... .......-...+...
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~l--a~~G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~-~~S~fs~e~~~~~~i 102 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IM--AQIGCFVPAEY-AT-LPIFNRLLSRLSNDDSMER-NLSTFASEMSETAYI 102 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HH--HHcCCCcchhh-cC-ccChhheeEecCCccccch-hhhHHHHHHHHHHHH
Confidence 3789999999999999988876421 00 11111221111 11 1233344444443321000 111111111122222
Q ss_pred h--ccCcEEEEEcCCCC--ChHH----HHHHhhhcCCCCCCcEEEEEecchhhhhhccCCC
Q 010117 270 L--TAKKYFIVLDDVFD--DSEI----WHDLVEFLPDNQNGSRVLITLLWFELQKGEKIQP 322 (518)
Q Consensus 270 L--~~kr~LlVLDdvw~--~~~~----~~~l~~~l~~~~~gskIivTTR~~~va~~~~~~P 322 (518)
+ ..++-|++||.... ++.+ ...+...+.. .|+.+|+||...+++..+...|
T Consensus 103 l~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~~~~ 161 (204)
T cd03282 103 LDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILGNKS 161 (204)
T ss_pred HHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhhcCC
Confidence 3 35678999999854 2322 1222333322 2789999999999888664333
No 251
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=95.44 E-value=0.18 Score=47.82 Aligned_cols=51 Identities=20% Similarity=0.302 Sum_probs=32.9
Q ss_pred HHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC-CCCCcEEEEEecchhhh
Q 010117 265 ILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD-NQNGSRVLITLLWFELQ 315 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~-~~~gskIivTTR~~~va 315 (518)
.+...+..+.-++++|+--. |......+...+.. ...|..||++|.+...+
T Consensus 123 ~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~ 176 (223)
T TIGR03771 123 LVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQA 176 (223)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 56666667778999999866 44444444444432 12367788888887643
No 252
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.44 E-value=0.1 Score=50.10 Aligned_cols=99 Identities=16% Similarity=0.132 Sum_probs=58.8
Q ss_pred HHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCC----------
Q 010117 181 DLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSR---------- 250 (518)
Q Consensus 181 ~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~---------- 250 (518)
++|..+=..-+++.|.|.+|+|||++|.++... .. ..-..++||+... ++.++.+.+. +++....
T Consensus 12 ~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~-~~-~~ge~~lyvs~ee--~~~~i~~~~~-~~g~~~~~~~~~g~l~~ 86 (237)
T TIGR03877 12 EILHGGIPERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGIYVALEE--HPVQVRRNMA-QFGWDVRKYEEEGKFAI 86 (237)
T ss_pred HHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHH-HH-HcCCcEEEEEeeC--CHHHHHHHHH-HhCCCHHHHhhcCCEEE
Confidence 344444345689999999999999999886542 12 2234678887655 4445555432 2221100
Q ss_pred -------------CC---ccccCCHHHHHHHHHHHhcc-CcEEEEEcCCCC
Q 010117 251 -------------VS---VIIGEDYQLKKSILQDYLTA-KKYFIVLDDVFD 284 (518)
Q Consensus 251 -------------~~---~~~~~~~~~~~~~l~~~L~~-kr~LlVLDdvw~ 284 (518)
.. .....+.+.+...+.+.++. +.-++|+|.+-.
T Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~ 137 (237)
T TIGR03877 87 VDAFTGGIGEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTT 137 (237)
T ss_pred EeccccccccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhH
Confidence 00 00224666777777777654 344799999754
No 253
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.43 E-value=0.087 Score=51.41 Aligned_cols=97 Identities=15% Similarity=0.017 Sum_probs=61.2
Q ss_pred HHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhh-cCCCCCCCccccCCHH
Q 010117 182 LLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINP-VMPPSRVSVIIGEDYQ 260 (518)
Q Consensus 182 ~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~-l~~~~~~~~~~~~~~~ 260 (518)
.|-.+=+.-+++=|+|+.|.||||+|.+++- .++..-..++|++.-..+++..+.. +... +..-.- ....+.+
T Consensus 52 ~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v---~~~~~~e 125 (279)
T COG0468 52 ALGGGLPRGRITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLV---SQPDTGE 125 (279)
T ss_pred HhcCCcccceEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeE---ecCCCHH
Confidence 3334434568999999999999999999887 4444445789999999999877543 3333 211100 0222333
Q ss_pred H---HHHHHHHHhccCcEEEEEcCCCC
Q 010117 261 L---KKSILQDYLTAKKYFIVLDDVFD 284 (518)
Q Consensus 261 ~---~~~~l~~~L~~kr~LlVLDdvw~ 284 (518)
+ +.+.+......+--|+|+|.|-.
T Consensus 126 ~q~~i~~~~~~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 126 QQLEIAEKLARSGAEKIDLLVVDSVAA 152 (279)
T ss_pred HHHHHHHHHHHhccCCCCEEEEecCcc
Confidence 3 33334444433456999999865
No 254
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.43 E-value=0.13 Score=48.31 Aligned_cols=23 Identities=22% Similarity=0.108 Sum_probs=21.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.+++|+|..|.|||||.+.+...
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 27 EFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999864
No 255
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=95.43 E-value=0.19 Score=50.07 Aligned_cols=53 Identities=15% Similarity=0.276 Sum_probs=32.4
Q ss_pred HHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC-CCCCcEEEEEecchhhhh
Q 010117 264 SILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD-NQNGSRVLITLLWFELQK 316 (518)
Q Consensus 264 ~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~-~~~gskIivTTR~~~va~ 316 (518)
-.+...|-.+.-+|+||.--. |+..-..+...+.. ...|..||+||.+...+.
T Consensus 133 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~ 188 (302)
T TIGR01188 133 LDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEAD 188 (302)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHH
Confidence 345666667788999999866 43333333322221 123678999999876554
No 256
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=95.43 E-value=0.026 Score=59.80 Aligned_cols=25 Identities=20% Similarity=0.130 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
..+-+.++|++|+|||++|+.+++.
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHh
Confidence 3456899999999999999999994
No 257
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.42 E-value=0.19 Score=46.96 Aligned_cols=52 Identities=15% Similarity=0.244 Sum_probs=32.6
Q ss_pred HHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCCC-CCCcEEEEEecchhhhh
Q 010117 265 ILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPDN-QNGSRVLITLLWFELQK 316 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~-~~gskIivTTR~~~va~ 316 (518)
.+...+..+.=+++||.--. |...-..+...+..- ..|..||++|.+...+.
T Consensus 136 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~ 190 (205)
T cd03226 136 AIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLA 190 (205)
T ss_pred HHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 45556666778999999866 444444444444321 23667888888865443
No 258
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.42 E-value=0.18 Score=51.19 Aligned_cols=101 Identities=7% Similarity=-0.012 Sum_probs=58.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCC-CCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHH
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIA-YDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQ 267 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 267 (518)
..+++.|+|+.|+||||++..+... ....-..+.+|+...- ....+-++...+.++.+.. ...+..++...+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~----~~~dp~dL~~al~ 278 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI----VATSPAELEEAVQ 278 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE----ecCCHHHHHHHHH
Confidence 4689999999999999998888763 2211123556665432 1234455556665554432 2345666655554
Q ss_pred HHhc-cCcEEEEEcCCCC---ChHHHHHHhhh
Q 010117 268 DYLT-AKKYFIVLDDVFD---DSEIWHDLVEF 295 (518)
Q Consensus 268 ~~L~-~kr~LlVLDdvw~---~~~~~~~l~~~ 295 (518)
..-. +..=+|++|-.-. +......+...
T Consensus 279 ~l~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l 310 (407)
T PRK12726 279 YMTYVNCVDHILIDTVGRNYLAEESVSEISAY 310 (407)
T ss_pred HHHhcCCCCEEEEECCCCCccCHHHHHHHHHH
Confidence 4431 3445788888755 23444444443
No 259
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=95.41 E-value=0.15 Score=47.98 Aligned_cols=51 Identities=14% Similarity=0.292 Sum_probs=31.8
Q ss_pred HHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC--CCCCcEEEEEecchhhh
Q 010117 265 ILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD--NQNGSRVLITLLWFELQ 315 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~--~~~gskIivTTR~~~va 315 (518)
.+...+..+.-+++||+--. |......+...+.. ...|..||++|.+....
T Consensus 138 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~ 192 (213)
T TIGR01277 138 ALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDA 192 (213)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 34455556677999999876 45555555544442 12367788888876543
No 260
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.40 E-value=0.11 Score=50.16 Aligned_cols=125 Identities=11% Similarity=0.090 Sum_probs=62.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcc-cc--cc---eEEEEEcCCCC------CHH-----------HHHHHHHhhcCC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVK-FY--FD---CHAWVRVSIAY------DFG-----------KILDDIINPVMP 247 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~-~~--F~---~~~wv~vs~~~------~~~-----------~i~~~i~~~l~~ 247 (518)
.+++|+|..|.|||||++.++.-.... .. ++ .+.++.-...+ ++. +-...+++.++.
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl 110 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQA 110 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHHHHHcCC
Confidence 589999999999999999998642111 11 11 12222111000 111 112233334333
Q ss_pred CCCC-CccccCCHH-HHHHHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC--CCCCcEEEEEecchhhh
Q 010117 248 PSRV-SVIIGEDYQ-LKKSILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD--NQNGSRVLITLLWFELQ 315 (518)
Q Consensus 248 ~~~~-~~~~~~~~~-~~~~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~--~~~gskIivTTR~~~va 315 (518)
.... ..+...+.. ...-.+...+..+.=+++||+--. |...-..+...+.. ...|..||++|.+...+
T Consensus 111 ~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i 184 (251)
T PRK09544 111 GHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLV 184 (251)
T ss_pred hHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 2110 011222222 223345556666777999999876 44444444443331 11256688888776554
No 261
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.39 E-value=0.16 Score=47.94 Aligned_cols=24 Identities=17% Similarity=-0.003 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
-.+++|+|..|.|||||.+.+..-
T Consensus 30 G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 30 GEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999863
No 262
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.38 E-value=0.1 Score=47.07 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=20.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.-|-|+|..|+||+.+|+.+++.
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHC
T ss_pred CCEEEEcCCCCcHHHHHHHHHHh
Confidence 45669999999999999999984
No 263
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=95.36 E-value=0.15 Score=53.76 Aligned_cols=40 Identities=13% Similarity=-0.118 Sum_probs=30.0
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+..++.+.+.+..+. -...+-++|+.|+||||+|+.+.+
T Consensus 22 q~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk 61 (451)
T PRK06305 22 QDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAK 61 (451)
T ss_pred cHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHH
Confidence 4556667777776542 235678899999999999988876
No 264
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.35 E-value=0.16 Score=47.34 Aligned_cols=24 Identities=8% Similarity=-0.057 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
-.+++|+|..|.|||||.+.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 26 GEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999998753
No 265
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.35 E-value=0.049 Score=57.60 Aligned_cols=88 Identities=11% Similarity=-0.008 Sum_probs=45.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCC--HHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYD--FGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQ 267 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~--~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 267 (518)
-.+|+|+|.+|+||||++..+......+.....+..++.. .+. ..+-++.....++.... ...+...+...+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtD-tyRigA~EQLk~ya~iLgv~v~----~a~d~~~L~~aL~ 424 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTD-TQRVGGREQLHSYGRQLGIAVH----EADSAESLLDLLE 424 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecc-cccccHHHHHHHhhcccCceeE----ecCcHHHHHHHHH
Confidence 4799999999999999998877521111111223444432 222 22223333333333222 2233444554444
Q ss_pred HHhccCcEEEEEcCCCC
Q 010117 268 DYLTAKKYFIVLDDVFD 284 (518)
Q Consensus 268 ~~L~~kr~LlVLDdvw~ 284 (518)
.. .+ .=+|++|..-.
T Consensus 425 ~l-~~-~DLVLIDTaG~ 439 (559)
T PRK12727 425 RL-RD-YKLVLIDTAGM 439 (559)
T ss_pred Hh-cc-CCEEEecCCCc
Confidence 33 33 44788888754
No 266
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.35 E-value=0.19 Score=46.87 Aligned_cols=53 Identities=19% Similarity=0.275 Sum_probs=34.5
Q ss_pred HHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC-CCCCcEEEEEecchhhhh
Q 010117 264 SILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD-NQNGSRVLITLLWFELQK 316 (518)
Q Consensus 264 ~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~-~~~gskIivTTR~~~va~ 316 (518)
-.+...|..+.-+++||+--. |......+...+.. ...|..||++|.+.....
T Consensus 143 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 198 (206)
T TIGR03608 143 VALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAK 198 (206)
T ss_pred HHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh
Confidence 345666667778999999876 45554555444432 123677888888876554
No 267
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.34 E-value=0.14 Score=48.77 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=32.3
Q ss_pred HHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC--CCCCcEEEEEecchhhhh
Q 010117 265 ILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD--NQNGSRVLITLLWFELQK 316 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~--~~~gskIivTTR~~~va~ 316 (518)
.+...+..+.-+++||+--. |...-..+...+.. ...|..||++|.+.+.+.
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~ 205 (233)
T cd03258 150 GIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVK 205 (233)
T ss_pred HHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 45555666677999999876 44444444444432 123677888888876543
No 268
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=95.33 E-value=0.18 Score=49.42 Aligned_cols=51 Identities=18% Similarity=0.322 Sum_probs=31.5
Q ss_pred HHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC-CCCCcEEEEEecchhhh
Q 010117 265 ILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD-NQNGSRVLITLLWFELQ 315 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~-~~~gskIivTTR~~~va 315 (518)
.+...|..+.=+++||+--. |......+...+.. ...|..||++|.+...+
T Consensus 152 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~ 205 (272)
T PRK15056 152 FLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSV 205 (272)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 45555556677999999876 45544555444431 12366788888876543
No 269
>PRK04040 adenylate kinase; Provisional
Probab=95.33 E-value=0.039 Score=50.90 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
..+|.|+|++|+||||+++.+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 270
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.32 E-value=0.23 Score=47.21 Aligned_cols=54 Identities=17% Similarity=0.180 Sum_probs=33.2
Q ss_pred HHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCCCCCCcEEEEEecchhhhhhc
Q 010117 265 ILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPDNQNGSRVLITLLWFELQKGE 318 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~~~gskIivTTR~~~va~~~ 318 (518)
.|...|..+.=+++||+-.. |......+...+..-..|..||++|.+......+
T Consensus 149 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~ 204 (229)
T cd03254 149 AIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNA 204 (229)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhC
Confidence 45555666777999999876 4444444444333222366788888887665433
No 271
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.32 E-value=0.091 Score=54.57 Aligned_cols=54 Identities=20% Similarity=0.179 Sum_probs=33.2
Q ss_pred HHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcC-CCCCCcEEEEEecchhhhhhc
Q 010117 265 ILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLP-DNQNGSRVLITLLWFELQKGE 318 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~-~~~~gskIivTTR~~~va~~~ 318 (518)
.|.+.+-|..+|+|||.=.. |.+-=..+..++. ....|+.+||.|.-..+...+
T Consensus 482 aLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~ 538 (580)
T COG4618 482 ALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASV 538 (580)
T ss_pred HHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhc
Confidence 57788899999999998765 2222222333332 223466677777666666554
No 272
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=95.30 E-value=0.027 Score=54.20 Aligned_cols=31 Identities=19% Similarity=0.190 Sum_probs=26.2
Q ss_pred CCCceEEEEEcCCCccHHHHHHHHHcCCCcccc
Q 010117 187 PPRLSVVAILDSSGFEMTAFAADAFNNNHVKFY 219 (518)
Q Consensus 187 ~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~ 219 (518)
+..+--+-++|++|.||||||..+.+ +....
T Consensus 49 ~e~lDHvLl~GPPGlGKTTLA~IIA~--Emgvn 79 (332)
T COG2255 49 GEALDHVLLFGPPGLGKTTLAHIIAN--ELGVN 79 (332)
T ss_pred CCCcCeEEeeCCCCCcHHHHHHHHHH--HhcCC
Confidence 56788899999999999999999999 44433
No 273
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.29 E-value=0.15 Score=45.13 Aligned_cols=21 Identities=19% Similarity=0.107 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 010117 192 VVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~ 212 (518)
||.|+|.+|+||||||+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999887
No 274
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.29 E-value=0.13 Score=47.93 Aligned_cols=122 Identities=12% Similarity=0.127 Sum_probs=58.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHHh
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDYL 270 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L 270 (518)
.+++|+|..|.|||||.+.+.... +..+. -.|+.... ..+ ....+++..+....... ........-...+...+
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~-~~~~~--g~~~~~~~-~~i-~~~dqi~~~~~~~d~i~-~~~s~~~~e~~~l~~i~ 103 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAV-LLAQI--GCFVPAES-ASI-PLVDRIFTRIGAEDSIS-DGRSTFMAELLELKEIL 103 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHH-HHHHc--CCCccccc-ccc-CCcCEEEEEecCccccc-CCceeHHHHHHHHHHHH
Confidence 799999999999999999987321 10000 01111000 000 00111111222111100 01111111122233333
Q ss_pred --ccCcEEEEEcCCCC--ChHHH----HHHhhhcCCCCCCcEEEEEecchhhhhhccC
Q 010117 271 --TAKKYFIVLDDVFD--DSEIW----HDLVEFLPDNQNGSRVLITLLWFELQKGEKI 320 (518)
Q Consensus 271 --~~kr~LlVLDdvw~--~~~~~----~~l~~~l~~~~~gskIivTTR~~~va~~~~~ 320 (518)
...+-++++|..-. +...- ..+...+. ..++.+|++|.+.+++..+..
T Consensus 104 ~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~--~~~~~vi~~tH~~~~~~~~~~ 159 (202)
T cd03243 104 SLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLL--EKGCRTLFATHFHELADLPEQ 159 (202)
T ss_pred HhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHH--hcCCeEEEECChHHHHHHhhc
Confidence 24788999999865 22211 22222222 236789999999988887643
No 275
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.28 E-value=0.056 Score=61.56 Aligned_cols=39 Identities=10% Similarity=0.092 Sum_probs=33.2
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
|+.+..++++.|.... ..-+.++|.+|+|||++|..+..
T Consensus 183 r~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 183 RDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred CHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHH
Confidence 9999999999997753 33456899999999999998887
No 276
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.28 E-value=0.12 Score=49.42 Aligned_cols=49 Identities=6% Similarity=0.022 Sum_probs=31.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHH
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDI 241 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i 241 (518)
.-.++.|.|..|+||||||.++... -.+.. ..+++++. .-+..++++.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~-~~~~g-~~~~yi~~--e~~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYG-FLQNG-YSVSYVST--QLTTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH-HHhCC-CcEEEEeC--CCCHHHHHHHH
Confidence 3469999999999999998655442 22222 23456653 33456666665
No 277
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.27 E-value=0.14 Score=50.29 Aligned_cols=53 Identities=23% Similarity=0.277 Sum_probs=34.1
Q ss_pred HHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCCC-CCCcEEEEEecchhhhh
Q 010117 264 SILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPDN-QNGSRVLITLLWFELQK 316 (518)
Q Consensus 264 ~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~-~~gskIivTTR~~~va~ 316 (518)
-.+...|..+.=+|+||+.-. |......+...+..- ..|..||++|.+.+.+.
T Consensus 147 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~ 202 (274)
T PRK13647 147 VAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAA 202 (274)
T ss_pred HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 346666777788999999876 455444554444311 23667888888876543
No 278
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=95.26 E-value=0.26 Score=49.74 Aligned_cols=40 Identities=13% Similarity=0.257 Sum_probs=28.9
Q ss_pred cCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEEecc
Q 010117 272 AKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLITLLW 311 (518)
Q Consensus 272 ~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~ 311 (518)
+.+=++|+|++.. .....+.+...+..-..++.+|++|.+
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~ 149 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTEN 149 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCC
Confidence 4455788999876 466777888877765567777777765
No 279
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.26 E-value=0.054 Score=48.24 Aligned_cols=119 Identities=9% Similarity=-0.015 Sum_probs=58.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcccccceEEE---EEcCCCCCHHHHHHHHHhhcCC---CCCCCccccC------C
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAW---VRVSIAYDFGKILDDIINPVMP---PSRVSVIIGE------D 258 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~w---v~vs~~~~~~~i~~~i~~~l~~---~~~~~~~~~~------~ 258 (518)
..|-|++-.|.||||+|....- +...+=..+.+ +.-........+++.+ ..+.. .......... .
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 3677878889999999976654 22222112233 2222233444444443 11100 0000000011 1
Q ss_pred HHHHHHHHHHHhccCc-EEEEEcCCCC----ChHHHHHHhhhcCCCCCCcEEEEEecch
Q 010117 259 YQLKKSILQDYLTAKK-YFIVLDDVFD----DSEIWHDLVEFLPDNQNGSRVLITLLWF 312 (518)
Q Consensus 259 ~~~~~~~l~~~L~~kr-~LlVLDdvw~----~~~~~~~l~~~l~~~~~gskIivTTR~~ 312 (518)
.....+..++.+.... =|||||++-. ..-..+.+...+.....+.-||+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1122334445554444 4999999865 1223344455554444567899999963
No 280
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.25 E-value=0.023 Score=57.26 Aligned_cols=42 Identities=12% Similarity=0.163 Sum_probs=34.0
Q ss_pred hhhhHHHHHHHHhcC----CCCceEEEEEcCCCccHHHHHHHHHcC
Q 010117 172 FERGREELFDLLIEG----PPRLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 172 r~~~~~~l~~~L~~~----~~~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.++.++++++++... ....+++.++|+.|+||||||+.+.+.
T Consensus 56 ~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 56 MEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 667777777777652 345689999999999999999999874
No 281
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.25 E-value=0.043 Score=56.47 Aligned_cols=23 Identities=22% Similarity=0.109 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
..++.++|++|+||||++..+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999998876
No 282
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.25 E-value=0.14 Score=55.40 Aligned_cols=25 Identities=24% Similarity=0.045 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
+-..++|+|+.|.|||||++.+..-
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999753
No 283
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.25 E-value=0.014 Score=44.20 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 010117 192 VVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~d 213 (518)
+|.|.|..|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998873
No 284
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.25 E-value=0.074 Score=53.16 Aligned_cols=115 Identities=12% Similarity=0.059 Sum_probs=61.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDY 269 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 269 (518)
-..+.|+|..|.|||||++.+... +..... .+.+.-........ .....-...... .....-...+.+...
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~--~~~~~~-iv~ied~~El~~~~--~~~~~l~~~~~~----~~~~~~~~~~~l~~~ 214 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDE--IPKDER-IITIEDTREIFLPH--PNYVHLFYSKGG----QGLAKVTPKDLLQSC 214 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcc--CCcccc-EEEEcCccccCCCC--CCEEEEEecCCC----CCcCccCHHHHHHHH
Confidence 368999999999999999988863 322211 22221111111100 000000000000 111122345566677
Q ss_pred hccCcEEEEEcCCCCChHHHHHHhhhcCCCCCCcEEEEEecchhhhhh
Q 010117 270 LTAKKYFIVLDDVFDDSEIWHDLVEFLPDNQNGSRVLITLLWFELQKG 317 (518)
Q Consensus 270 L~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~va~~ 317 (518)
|+...=.|++|.+.. .+.|+-+... ..+.. -++.|+...+++..
T Consensus 215 Lr~~pd~ii~gE~r~-~e~~~~l~a~-~~g~~--~~i~T~Ha~~~~~~ 258 (308)
T TIGR02788 215 LRMRPDRIILGELRG-DEAFDFIRAV-NTGHP--GSITTLHAGSPEEA 258 (308)
T ss_pred hcCCCCeEEEeccCC-HHHHHHHHHH-hcCCC--eEEEEEeCCCHHHH
Confidence 777778899999998 7777654443 23222 25788877665543
No 285
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.24 E-value=0.16 Score=52.59 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
-.+++++|..|+||||+...+..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999887654
No 286
>PRK06547 hypothetical protein; Provisional
Probab=95.24 E-value=0.027 Score=51.11 Aligned_cols=26 Identities=23% Similarity=0.111 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHcC
Q 010117 188 PRLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 188 ~~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
....+|+|.|..|+||||+|+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999874
No 287
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.24 E-value=0.21 Score=48.51 Aligned_cols=24 Identities=8% Similarity=0.072 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
-.+++|+|..|.|||||.+.+..-
T Consensus 26 Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 26 GQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998763
No 288
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.23 E-value=0.083 Score=54.97 Aligned_cols=92 Identities=11% Similarity=0.151 Sum_probs=50.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC--CccccCC-----HHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRV--SVIIGED-----YQLK 262 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~--~~~~~~~-----~~~~ 262 (518)
-..++|+|..|+|||||++.+..... ....++++.--+.-++.++....+.......-. .+.+... ....
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 35799999999999999998876322 223444444334445555544444332110000 0001111 1112
Q ss_pred HHHHHHHh--ccCcEEEEEcCCCC
Q 010117 263 KSILQDYL--TAKKYFIVLDDVFD 284 (518)
Q Consensus 263 ~~~l~~~L--~~kr~LlVLDdvw~ 284 (518)
.-.+.+++ +|+..|+++||+-.
T Consensus 242 a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccchHH
Confidence 23344554 47899999999854
No 289
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.22 E-value=0.064 Score=52.05 Aligned_cols=94 Identities=17% Similarity=0.176 Sum_probs=58.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCc--ccccceEEEEEcCCCC-CHHHHHHHHHhhcCCCCCC---CccccCCHH----
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHV--KFYFDCHAWVRVSIAY-DFGKILDDIINPVMPPSRV---SVIIGEDYQ---- 260 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~--~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~---~~~~~~~~~---- 260 (518)
+.++|.|-.|+|||+|+..+.++..+ +.+-+.++++-+++.. ++.+++.++.+.-...... ...+.....
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 57899999999999999998875431 1234678888888775 4566666665532111110 000111111
Q ss_pred -HHHHHHHHHhc---cCcEEEEEcCCCC
Q 010117 261 -LKKSILQDYLT---AKKYFIVLDDVFD 284 (518)
Q Consensus 261 -~~~~~l~~~L~---~kr~LlVLDdvw~ 284 (518)
...-.+.++++ +|+.|+++||+-.
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 12334566663 6899999999865
No 290
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.22 E-value=0.17 Score=48.36 Aligned_cols=53 Identities=15% Similarity=0.182 Sum_probs=33.2
Q ss_pred HHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCCCCCCcEEEEEecchhhhhhc
Q 010117 266 LQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPDNQNGSRVLITLLWFELQKGE 318 (518)
Q Consensus 266 l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~~~gskIivTTR~~~va~~~ 318 (518)
+...+..+.=+|+||+... |......+...+..-..|..||++|.+...+..|
T Consensus 150 la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~ 204 (238)
T cd03249 150 IARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNA 204 (238)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhC
Confidence 4555556667999999877 4544444444443222467788888887665533
No 291
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.22 E-value=0.062 Score=55.83 Aligned_cols=92 Identities=15% Similarity=0.135 Sum_probs=54.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCC-HHHHHHHHHhhcCCCCCC---CccccCCHH----
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYD-FGKILDDIINPVMPPSRV---SVIIGEDYQ---- 260 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~~l~~~~~~---~~~~~~~~~---- 260 (518)
.-..++|+|..|+|||||++.+.+... -+..+.+-+++... +.++..+.+..-+..... ...+.....
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 346899999999999999999997432 23455666766653 445555554432211110 000111111
Q ss_pred -HHHHHHHHHh--ccCcEEEEEcCCCC
Q 010117 261 -LKKSILQDYL--TAKKYFIVLDDVFD 284 (518)
Q Consensus 261 -~~~~~l~~~L--~~kr~LlVLDdvw~ 284 (518)
...-.+.+++ +|+..|+++||+-.
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 1223355555 57999999999954
No 292
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.21 E-value=0.24 Score=47.25 Aligned_cols=54 Identities=11% Similarity=0.175 Sum_probs=34.7
Q ss_pred HHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCCCCCCcEEEEEecchhhhhhc
Q 010117 265 ILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPDNQNGSRVLITLLWFELQKGE 318 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~~~gskIivTTR~~~va~~~ 318 (518)
.+...|..+.-+|+||+-.. |......+...+..-..|..||++|.+......+
T Consensus 147 ~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~ 202 (236)
T cd03253 147 AIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNA 202 (236)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhC
Confidence 45566667778999999877 4555555554443222266788888877665433
No 293
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=95.17 E-value=0.17 Score=49.06 Aligned_cols=53 Identities=15% Similarity=0.241 Sum_probs=33.6
Q ss_pred HHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC--CCCCcEEEEEecchhhhh
Q 010117 264 SILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD--NQNGSRVLITLLWFELQK 316 (518)
Q Consensus 264 ~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~--~~~gskIivTTR~~~va~ 316 (518)
-.+...+..+.-+|+||+--. |......+...+.. ...|..||++|.+...+.
T Consensus 160 l~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~ 216 (258)
T PRK11701 160 LQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVAR 216 (258)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHH
Confidence 345666667788999999876 44444444443331 122667888888876655
No 294
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.17 E-value=0.11 Score=48.06 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
-.+++|+|..|.|||||.+.+..
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999986
No 295
>PRK06762 hypothetical protein; Provisional
Probab=95.16 E-value=0.017 Score=52.02 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
..+|.|+|+.|+||||+|+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 296
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.16 E-value=0.12 Score=50.94 Aligned_cols=55 Identities=13% Similarity=0.126 Sum_probs=35.9
Q ss_pred HHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC--CCCCcEEEEEecchhhhhhc
Q 010117 264 SILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD--NQNGSRVLITLLWFELQKGE 318 (518)
Q Consensus 264 ~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~--~~~gskIivTTR~~~va~~~ 318 (518)
-.|...|..+.-+|+||+.-. |...-..+...+.. ...|..||++|.+...+..|
T Consensus 149 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~ 207 (279)
T PRK13650 149 VAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALS 207 (279)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhC
Confidence 346666777788999999877 45545555444432 12377899998887665433
No 297
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.15 E-value=0.05 Score=56.94 Aligned_cols=92 Identities=11% Similarity=0.166 Sum_probs=57.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCC-CHHHHHHHHHhhcCCCCCC---CccccCC-----HHH
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAY-DFGKILDDIINPVMPPSRV---SVIIGED-----YQL 261 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~---~~~~~~~-----~~~ 261 (518)
+.++|+|..|+|||||+.++.+.... .+-+.++++-+++.. .+.+++.++...-...... ...+... ...
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~ 222 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVL 222 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHH
Confidence 57999999999999999888874322 255778888887665 4566666665432211110 0001111 112
Q ss_pred HHHHHHHHh---ccCcEEEEEcCCC
Q 010117 262 KKSILQDYL---TAKKYFIVLDDVF 283 (518)
Q Consensus 262 ~~~~l~~~L---~~kr~LlVLDdvw 283 (518)
....+.+++ .|++.||++||+-
T Consensus 223 ~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 223 TGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHhcCCceEEEeccch
Confidence 234466666 3799999999994
No 298
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=95.15 E-value=0.23 Score=48.20 Aligned_cols=54 Identities=9% Similarity=0.249 Sum_probs=33.8
Q ss_pred HHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC-CCCCcEEEEEecchhhhhh
Q 010117 264 SILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD-NQNGSRVLITLLWFELQKG 317 (518)
Q Consensus 264 ~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~-~~~gskIivTTR~~~va~~ 317 (518)
-.+...|..+.=+|+||.--. |......+...+.. ...|..||++|.+...+..
T Consensus 161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~ 217 (257)
T PRK10619 161 VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARH 217 (257)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 345566666677999999866 45555555444332 1236778888887765543
No 299
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=95.15 E-value=0.27 Score=53.18 Aligned_cols=131 Identities=9% Similarity=-0.085 Sum_probs=64.9
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRV 251 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~ 251 (518)
-+..++.+...+..+. -...+-++|+.|+||||+|+.+.+.---..... .......++- +.|...-......
T Consensus 21 qe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~---~~pC~~C~~C----~~i~~~~~~dv~~ 92 (563)
T PRK06647 21 QDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPT---PMPCGECSSC----KSIDNDNSLDVIE 92 (563)
T ss_pred cHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCC---CCCCccchHH----HHHHcCCCCCeEE
Confidence 3455666777776553 345688999999999999999887311110000 0000000011 1111100000000
Q ss_pred Cc-cccCCHHHHHHHH---HHH-hccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEEec
Q 010117 252 SV-IIGEDYQLKKSIL---QDY-LTAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLITLL 310 (518)
Q Consensus 252 ~~-~~~~~~~~~~~~l---~~~-L~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR 310 (518)
-. ......+++.+.. ... ..+++-++|+|++.. ....++.+...+..-...+.+|.+|.
T Consensus 93 idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tt 157 (563)
T PRK06647 93 IDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATT 157 (563)
T ss_pred ecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecC
Confidence 00 0112233332222 111 235666899999876 46678888877765444566655553
No 300
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=95.13 E-value=0.27 Score=53.14 Aligned_cols=51 Identities=18% Similarity=0.178 Sum_probs=33.1
Q ss_pred HHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCCCCCCcEEEEEecchhhhh
Q 010117 264 SILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPDNQNGSRVLITLLWFELQK 316 (518)
Q Consensus 264 ~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~~~gskIivTTR~~~va~ 316 (518)
-.+...|..+.=+|+||.-.. |...-..+...+.. .|..||++|.+...+.
T Consensus 164 v~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~ 216 (530)
T PRK15064 164 VLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLN 216 (530)
T ss_pred HHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHH
Confidence 345556666777999999877 44444445444432 3566888888876543
No 301
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.13 E-value=0.21 Score=46.62 Aligned_cols=54 Identities=19% Similarity=0.203 Sum_probs=33.6
Q ss_pred HHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC-CCCCcEEEEEecchhhhhhc
Q 010117 265 ILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD-NQNGSRVLITLLWFELQKGE 318 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~-~~~gskIivTTR~~~va~~~ 318 (518)
.+...+-.+.-+++||.--. |......+...+.. ...|..||++|.+..-...|
T Consensus 139 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~ 195 (204)
T PRK13538 139 ALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASD 195 (204)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccC
Confidence 45555666777999999866 45555555444432 12356788888886655544
No 302
>PRK05439 pantothenate kinase; Provisional
Probab=95.12 E-value=0.14 Score=50.88 Aligned_cols=82 Identities=12% Similarity=-0.019 Sum_probs=47.1
Q ss_pred CCCceEEEEEcCCCccHHHHHHHHHcCCCccccc--ceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHH
Q 010117 187 PPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYF--DCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKS 264 (518)
Q Consensus 187 ~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F--~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~ 264 (518)
.....+|+|.|..|+||||+|+.+.. ...... ..+.-++...-+-..+.+.. ..+... ...+..-|.+.+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~~--~~l~~~--kg~Pes~D~~~l~~ 156 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLEE--RGLMKR--KGFPESYDMRALLR 156 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHhh--hhcccc--CCCcccccHHHHHH
Confidence 34678999999999999999998876 333221 12333444433333332221 111110 01235667777777
Q ss_pred HHHHHhccCc
Q 010117 265 ILQDYLTAKK 274 (518)
Q Consensus 265 ~l~~~L~~kr 274 (518)
.|.....|+.
T Consensus 157 ~L~~Lk~G~~ 166 (311)
T PRK05439 157 FLSDVKSGKP 166 (311)
T ss_pred HHHHHHcCCC
Confidence 7777777665
No 303
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.11 E-value=0.034 Score=51.84 Aligned_cols=22 Identities=14% Similarity=-0.109 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAF 211 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~ 211 (518)
-+++.|+|+.|.|||||.+.+.
T Consensus 28 ~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 28 KRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ceEEEEECCCCCChHHHHHHHH
Confidence 3799999999999999999877
No 304
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=0.049 Score=58.51 Aligned_cols=71 Identities=18% Similarity=0.116 Sum_probs=45.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHH----
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSI---- 265 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~---- 265 (518)
..-|-|.|..|+|||+||+.+++... +.+.-.+..|+.|.- .....+.++..
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l-----------------------~~~~~e~iQk~l~~v 486 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTL-----------------------DGSSLEKIQKFLNNV 486 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhc-----------------------cchhHHHHHHHHHHH
Confidence 45688999999999999999998533 333333445544432 11122333333
Q ss_pred HHHHhccCcEEEEEcCCCC
Q 010117 266 LQDYLTAKKYFIVLDDVFD 284 (518)
Q Consensus 266 l~~~L~~kr~LlVLDdvw~ 284 (518)
+.+.+....-+|||||+..
T Consensus 487 fse~~~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 487 FSEALWYAPSIIVLDDLDC 505 (952)
T ss_pred HHHHHhhCCcEEEEcchhh
Confidence 3445566788999999853
No 305
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.10 E-value=0.076 Score=59.63 Aligned_cols=39 Identities=18% Similarity=0.092 Sum_probs=32.7
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
|+.+.+++++.|.... ..-+.++|++|+|||++|+.+.+
T Consensus 187 r~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~ 225 (731)
T TIGR02639 187 REDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLAL 225 (731)
T ss_pred cHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHH
Confidence 9999999998887653 23456899999999999999887
No 306
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.14 Score=53.38 Aligned_cols=118 Identities=18% Similarity=0.120 Sum_probs=64.0
Q ss_pred HHHHHHHhcC-CCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccc
Q 010117 177 EELFDLLIEG-PPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVII 255 (518)
Q Consensus 177 ~~l~~~L~~~-~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~ 255 (518)
..+++.+... ...+..+.+.|++|+|||+||..+..+ ..|+.+--+ +++++ ++.+ +
T Consensus 524 ~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKii------Spe~m-------iG~s------E 580 (744)
T KOG0741|consen 524 KLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKII------SPEDM-------IGLS------E 580 (744)
T ss_pred HHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEe------ChHHc-------cCcc------H
Confidence 3344444443 346777888999999999999999873 346533222 11111 0111 1
Q ss_pred cCCHHHHHHHHHHHhccCcEEEEEcCCCCChHHHH------------HHhhhcCC-CCCCcE--EEEEecchhhhhhc
Q 010117 256 GEDYQLKKSILQDYLTAKKYFIVLDDVFDDSEIWH------------DLVEFLPD-NQNGSR--VLITLLWFELQKGE 318 (518)
Q Consensus 256 ~~~~~~~~~~l~~~L~~kr~LlVLDdvw~~~~~~~------------~l~~~l~~-~~~gsk--IivTTR~~~va~~~ 318 (518)
......+.....+.-+..--.||+||+.. --+|- .+.-.|.. ..+|-| |+-||....|...|
T Consensus 581 saKc~~i~k~F~DAYkS~lsiivvDdiEr-LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m 657 (744)
T KOG0741|consen 581 SAKCAHIKKIFEDAYKSPLSIIVVDDIER-LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEM 657 (744)
T ss_pred HHHHHHHHHHHHHhhcCcceEEEEcchhh-hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHc
Confidence 11122233333444455667899999976 44443 22222321 122334 55677777887777
No 307
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.08 E-value=0.19 Score=46.92 Aligned_cols=52 Identities=19% Similarity=0.240 Sum_probs=32.9
Q ss_pred HHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC-CCCCcEEEEEecchhhhh
Q 010117 265 ILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD-NQNGSRVLITLLWFELQK 316 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~-~~~gskIivTTR~~~va~ 316 (518)
.+...+..+.-+++||+--. |......+...+.. ...|..||++|.+...+.
T Consensus 136 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~ 190 (208)
T cd03268 136 GIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQ 190 (208)
T ss_pred HHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 35555666677999999876 44444455444432 123667899998876553
No 308
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.07 E-value=0.33 Score=48.34 Aligned_cols=23 Identities=13% Similarity=0.094 Sum_probs=21.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.+++|+|+.|.|||||.+.+...
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999864
No 309
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.085 Score=55.84 Aligned_cols=89 Identities=15% Similarity=0.231 Sum_probs=57.7
Q ss_pred hhhhHHHHHHHHhc---CC-------CCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHH
Q 010117 172 FERGREELFDLLIE---GP-------PRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDI 241 (518)
Q Consensus 172 r~~~~~~l~~~L~~---~~-------~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i 241 (518)
.+....++.+++.. .+ ...+=|.++|++|+|||.||+.+.+. ..-.| +.++.+ +|
T Consensus 195 ~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge--l~vPf-----~~isAp--------ei 259 (802)
T KOG0733|consen 195 LDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE--LGVPF-----LSISAP--------EI 259 (802)
T ss_pred hHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh--cCCce-----Eeecch--------hh
Confidence 66666666555543 21 24566889999999999999999994 33333 344433 34
Q ss_pred HhhcCCCCCCCccccCCHHHHHHHHHHHhccCcEEEEEcCCCC
Q 010117 242 INPVMPPSRVSVIIGEDYQLKKSILQDYLTAKKYFIVLDDVFD 284 (518)
Q Consensus 242 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~ 284 (518)
++...+. ..+.+.+.+.+....-.+++.+|++.-
T Consensus 260 vSGvSGE---------SEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 260 VSGVSGE---------SEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred hcccCcc---------cHHHHHHHHHHHhccCCeEEEeecccc
Confidence 4444433 334555556666667899999999864
No 310
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.06 E-value=0.15 Score=50.21 Aligned_cols=55 Identities=13% Similarity=0.162 Sum_probs=36.2
Q ss_pred HHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC--CCCCcEEEEEecchhhhhhc
Q 010117 264 SILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD--NQNGSRVLITLLWFELQKGE 318 (518)
Q Consensus 264 ~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~--~~~gskIivTTR~~~va~~~ 318 (518)
-.|...|..+.=+|+||+-.. |......+...+.. ...|..||++|.+......|
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~ 210 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMA 210 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhC
Confidence 345566667778999999877 55555555555542 22367799999887665433
No 311
>PRK08149 ATP synthase SpaL; Validated
Probab=95.05 E-value=0.088 Score=54.56 Aligned_cols=91 Identities=11% Similarity=0.143 Sum_probs=52.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCC-CCHHHHHHHHHhhcCCCCCC---CccccC-----CHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIA-YDFGKILDDIINPVMPPSRV---SVIIGE-----DYQ 260 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~~~~~---~~~~~~-----~~~ 260 (518)
-..++|+|..|+|||||.+.+.+.... +..+...+... -++.++..+........... ...+.. ...
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~~----dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSEA----DVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCCC----CeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 357899999999999999999874322 23333444433 35666666666543221110 000111 111
Q ss_pred HHHHHHHHHh--ccCcEEEEEcCCCC
Q 010117 261 LKKSILQDYL--TAKKYFIVLDDVFD 284 (518)
Q Consensus 261 ~~~~~l~~~L--~~kr~LlVLDdvw~ 284 (518)
.....+.+++ +||+.||++||+-.
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccchHH
Confidence 2233445555 57999999999854
No 312
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.05 E-value=0.047 Score=53.44 Aligned_cols=88 Identities=17% Similarity=0.139 Sum_probs=48.9
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhh-cCCCCCCCccc
Q 010117 177 EELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINP-VMPPSRVSVII 255 (518)
Q Consensus 177 ~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~-l~~~~~~~~~~ 255 (518)
..+++.+.... +-+.++|+.|+|||++++.......- ..| ...-++.|...+...++ .++++ +..... .
T Consensus 23 ~~ll~~l~~~~---~pvLl~G~~GtGKT~li~~~l~~l~~-~~~-~~~~~~~s~~Tts~~~q-~~ie~~l~k~~~----~ 92 (272)
T PF12775_consen 23 SYLLDLLLSNG---RPVLLVGPSGTGKTSLIQNFLSSLDS-DKY-LVITINFSAQTTSNQLQ-KIIESKLEKRRG----R 92 (272)
T ss_dssp HHHHHHHHHCT---EEEEEESSTTSSHHHHHHHHHHCSTT-CCE-EEEEEES-TTHHHHHHH-HCCCTTECECTT----E
T ss_pred HHHHHHHHHcC---CcEEEECCCCCchhHHHHhhhccCCc-ccc-ceeEeeccCCCCHHHHH-HHHhhcEEcCCC----C
Confidence 45667776652 56789999999999999998863211 122 13345555544444433 33322 221111 0
Q ss_pred cCCHHHHHHHHHHHhccCcEEEEEcCCCC
Q 010117 256 GEDYQLKKSILQDYLTAKKYFIVLDDVFD 284 (518)
Q Consensus 256 ~~~~~~~~~~l~~~L~~kr~LlVLDdvw~ 284 (518)
.- .--.+|+.++.+||+--
T Consensus 93 ~~----------gP~~~k~lv~fiDDlN~ 111 (272)
T PF12775_consen 93 VY----------GPPGGKKLVLFIDDLNM 111 (272)
T ss_dssp EE----------EEESSSEEEEEEETTT-
T ss_pred CC----------CCCCCcEEEEEecccCC
Confidence 00 00136899999999965
No 313
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.04 E-value=0.27 Score=47.01 Aligned_cols=53 Identities=19% Similarity=0.244 Sum_probs=33.6
Q ss_pred HHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCCCCCCcEEEEEecchhhhhhc
Q 010117 266 LQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPDNQNGSRVLITLLWFELQKGE 318 (518)
Q Consensus 266 l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~~~gskIivTTR~~~va~~~ 318 (518)
+...+..+.=+|+||+-.. |......+...+..-..|..||++|.+...+..+
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~ 203 (237)
T cd03252 149 IARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNA 203 (237)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhC
Confidence 4455555667999999877 4544444444443222367799999887766533
No 314
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.04 E-value=0.2 Score=49.56 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=33.8
Q ss_pred HHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC--CCCCcEEEEEecchhhhh
Q 010117 264 SILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD--NQNGSRVLITLLWFELQK 316 (518)
Q Consensus 264 ~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~--~~~gskIivTTR~~~va~ 316 (518)
-.|...|..+.-+|+||+--. |...-..+...+.. ...|..||++|.+...+.
T Consensus 154 v~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~ 210 (290)
T PRK13634 154 VAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAA 210 (290)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 456677777888999999876 44444444433331 123667888888866543
No 315
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.02 E-value=0.045 Score=50.06 Aligned_cols=21 Identities=43% Similarity=0.426 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 010117 192 VVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~ 212 (518)
+|+|.|..|+||||||+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 316
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.02 E-value=0.33 Score=53.23 Aligned_cols=133 Identities=10% Similarity=-0.031 Sum_probs=67.1
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRV 251 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~ 251 (518)
.+..++.|..++..+. -..-+-++|..|+||||+|+.+.+.--....... ....+..-...+.|..........
T Consensus 21 q~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-----~~~~Cg~C~~C~~i~~g~h~D~~e 94 (620)
T PRK14948 21 QEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-----TPEPCGKCELCRAIAAGNALDVIE 94 (620)
T ss_pred hHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-----CCCCCcccHHHHHHhcCCCccEEE
Confidence 4556666777776542 2346788999999999999999874211100000 001112122222222221110000
Q ss_pred Ccc-ccCCHHHHHHHHHHH----hccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEEec
Q 010117 252 SVI-IGEDYQLKKSILQDY----LTAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLITLL 310 (518)
Q Consensus 252 ~~~-~~~~~~~~~~~l~~~----L~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR 310 (518)
-.. .....+++.+.+... ..+++-++|+|++.. ....++.|...+..-.....+|++|.
T Consensus 95 i~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~ 159 (620)
T PRK14948 95 IDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATT 159 (620)
T ss_pred EeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeC
Confidence 000 112233333332221 124556899999986 46778888877765444555555554
No 317
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.02 E-value=0.03 Score=53.15 Aligned_cols=126 Identities=14% Similarity=0.088 Sum_probs=64.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHH
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQD 268 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 268 (518)
..+++.|.|+.|.||||+.+.+... .-.+..-.+|..... ...+...|+..++...... ........-...+..
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~---~~la~~g~~vpa~~~--~~~~~~~il~~~~l~d~~~-~~lS~~~~e~~~~a~ 102 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVI---VLMAQIGCFVPCDSA--DIPIVDCILARVGASDSQL-KGVSTFMAEMLETAA 102 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH---HHHHHhCCCcCcccE--EEeccceeEeeeccccchh-cCcChHHHHHHHHHH
Confidence 4579999999999999998886531 001111112222110 0112233333333322100 011122222233333
Q ss_pred Hh--ccCcEEEEEcCCC---C--Ch--HHHHHHhhhcCCCCCCcEEEEEecchhhhhhccCCC
Q 010117 269 YL--TAKKYFIVLDDVF---D--DS--EIWHDLVEFLPDNQNGSRVLITLLWFELQKGEKIQP 322 (518)
Q Consensus 269 ~L--~~kr~LlVLDdvw---~--~~--~~~~~l~~~l~~~~~gskIivTTR~~~va~~~~~~P 322 (518)
.+ ..++-|++||... + |. ..|..+ ..+.. ..|+.+|+||...++...+...+
T Consensus 103 il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il-~~l~~-~~~~~vlisTH~~el~~~~~~~~ 163 (222)
T cd03285 103 ILKSATENSLIIIDELGRGTSTYDGFGLAWAIA-EYIAT-QIKCFCLFATHFHELTALADEVP 163 (222)
T ss_pred HHHhCCCCeEEEEecCcCCCChHHHHHHHHHHH-HHHHh-cCCCeEEEEechHHHHHHhhcCC
Confidence 44 3578899999993 3 11 123222 22322 34788999999888877765444
No 318
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.00 E-value=0.019 Score=52.60 Aligned_cols=24 Identities=8% Similarity=0.163 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
+.++|.|+|+.|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999986
No 319
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=94.99 E-value=0.24 Score=52.65 Aligned_cols=126 Identities=10% Similarity=0.049 Sum_probs=65.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCc-ccc--cceE-EEEE----cCCCCCHHHH------------------HHHHHhh
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHV-KFY--FDCH-AWVR----VSIAYDFGKI------------------LDDIINP 244 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~-~~~--F~~~-~wv~----vs~~~~~~~i------------------~~~i~~~ 244 (518)
.+++|+|..|.|||||.+.+..-... .+. |+.. ..+. .....++.+. ...+++.
T Consensus 51 EivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~ 130 (549)
T PRK13545 51 EIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEF 130 (549)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999874211 111 1110 0111 1111122111 1223333
Q ss_pred cCCCCC-CCccccCCHHHHH-HHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC-CCCCcEEEEEecchhhhh
Q 010117 245 VMPPSR-VSVIIGEDYQLKK-SILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD-NQNGSRVLITLLWFELQK 316 (518)
Q Consensus 245 l~~~~~-~~~~~~~~~~~~~-~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~-~~~gskIivTTR~~~va~ 316 (518)
++.... ...+...+..+.+ -.|...|....-+|+||.--. |......+...+.. ...|..||++|.+...+.
T Consensus 131 lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~ 207 (549)
T PRK13545 131 ADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVK 207 (549)
T ss_pred cCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH
Confidence 333211 0111223333333 346666777788999999866 44444444433321 123667889988865543
No 320
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.99 E-value=0.66 Score=43.16 Aligned_cols=55 Identities=15% Similarity=0.155 Sum_probs=34.9
Q ss_pred HHHHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhh-cC-CCCCCcEEEEEecchhhhh
Q 010117 262 KKSILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEF-LP-DNQNGSRVLITLLWFELQK 316 (518)
Q Consensus 262 ~~~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~-l~-~~~~gskIivTTR~~~va~ 316 (518)
..-.+...+..+.=++++|+--. |....+.+... +. ....|..||++|.+.....
T Consensus 134 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~ 192 (204)
T cd03250 134 QRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLP 192 (204)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHh
Confidence 34456677777888999999766 45544545442 22 1223677888888766554
No 321
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.99 E-value=0.33 Score=47.99 Aligned_cols=53 Identities=15% Similarity=0.277 Sum_probs=34.1
Q ss_pred HHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC-CCCCcEEEEEecchhhhh
Q 010117 264 SILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD-NQNGSRVLITLLWFELQK 316 (518)
Q Consensus 264 ~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~-~~~gskIivTTR~~~va~ 316 (518)
-.|...|..+.=+|+||+--. |......+...+.. ...|..||++|.+...+.
T Consensus 153 vaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~ 208 (288)
T PRK13643 153 VAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVA 208 (288)
T ss_pred HHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 345666666777999999876 45555555444431 123677999999876543
No 322
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.97 E-value=0.2 Score=49.05 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=21.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.+++|+|..|.|||||.+.+..-
T Consensus 36 e~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 36 QWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999863
No 323
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.97 E-value=0.069 Score=60.74 Aligned_cols=39 Identities=13% Similarity=0.133 Sum_probs=33.1
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
|+.++.++++.|.... ..-+.++|.+|+||||+|..+.+
T Consensus 192 r~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~ 230 (852)
T TIGR03345 192 RDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLAL 230 (852)
T ss_pred CHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHH
Confidence 9999999999887653 33456999999999999999887
No 324
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.96 E-value=0.26 Score=54.43 Aligned_cols=40 Identities=13% Similarity=-0.016 Sum_probs=29.6
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
-+..++.|.+.+..+. -...+-++|+.|+||||+|+.+.+
T Consensus 23 Qe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk 62 (725)
T PRK07133 23 QDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFAN 62 (725)
T ss_pred cHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHH
Confidence 4455666777776542 345667899999999999998876
No 325
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.96 E-value=0.36 Score=46.43 Aligned_cols=52 Identities=13% Similarity=0.121 Sum_probs=31.5
Q ss_pred HHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCCCCCCcEEEEEecchhhh
Q 010117 264 SILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPDNQNGSRVLITLLWFELQ 315 (518)
Q Consensus 264 ~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~~~gskIivTTR~~~va 315 (518)
-.+...+..+.=+++||+--. |...-..+...+.....|..||++|.+...+
T Consensus 151 v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~ 204 (246)
T PRK14269 151 LCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQG 204 (246)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence 345666666777999999866 3433334433333212266788888876644
No 326
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.95 E-value=0.18 Score=47.74 Aligned_cols=122 Identities=9% Similarity=0.026 Sum_probs=60.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDY 269 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 269 (518)
-.++.|.|+.|.||||+.+.+.-.. +..+-.+.+|..- .. -....+|+..++..+... ........-...+...
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~-~la~~G~~v~a~~---~~-~~~~~~i~~~~~~~d~~~-~~~StF~~e~~~~~~i 104 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALIT-IMAQIGSFVPASS---AT-LSIFDSVLTRMGASDSIQ-HGMSTFMVELSETSHI 104 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHhCCCEEEcCc---eE-EeccceEEEEecCccccc-cccchHHHHHHHHHHH
Confidence 4688999999999999988876521 0000011111100 00 001112222222221100 0111222222333444
Q ss_pred hc--cCcEEEEEcCCCC--C---hHH-HHHHhhhcCCCCCCcEEEEEecchhhhhhc
Q 010117 270 LT--AKKYFIVLDDVFD--D---SEI-WHDLVEFLPDNQNGSRVLITLLWFELQKGE 318 (518)
Q Consensus 270 L~--~kr~LlVLDdvw~--~---~~~-~~~l~~~l~~~~~gskIivTTR~~~va~~~ 318 (518)
++ +++-|++||.... + ... -..+...+... .++.+|++|...+++...
T Consensus 105 l~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 105 LSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 43 4789999999754 1 111 12233333332 478999999999887654
No 327
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.38 Score=45.13 Aligned_cols=128 Identities=15% Similarity=0.080 Sum_probs=71.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCc--cc---ccce--------------EEEEEcCCCC-----CHHHHHHH------
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHV--KF---YFDC--------------HAWVRVSIAY-----DFGKILDD------ 240 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~--~~---~F~~--------------~~wv~vs~~~-----~~~~i~~~------ 240 (518)
-+-+|.|+.|.||+|||..+.-++.. .+ .|+. -+++....+. ....+++.
T Consensus 31 EvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~ 110 (251)
T COG0396 31 EVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARR 110 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhh
Confidence 57899999999999999999887633 22 1321 2333333222 22333333
Q ss_pred ---------------HHhhcCCCCCC----CccccCCHHHHHHHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcC-C
Q 010117 241 ---------------IINPVMPPSRV----SVIIGEDYQLKKSILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLP-D 298 (518)
Q Consensus 241 ---------------i~~~l~~~~~~----~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~-~ 298 (518)
.+..++.+..- -+..-+.-+.....+.+.+--+.=|.|||.-.+ |.+....+..... -
T Consensus 111 ~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~l 190 (251)
T COG0396 111 GARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINAL 190 (251)
T ss_pred ccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHH
Confidence 23333222100 000122223334445555555667999999988 5555544443332 1
Q ss_pred CCCCcEEEEEecchhhhhhc
Q 010117 299 NQNGSRVLITLLWFELQKGE 318 (518)
Q Consensus 299 ~~~gskIivTTR~~~va~~~ 318 (518)
..+|+-+||.|..+.++...
T Consensus 191 r~~~~~~liITHy~rll~~i 210 (251)
T COG0396 191 REEGRGVLIITHYQRLLDYI 210 (251)
T ss_pred hcCCCeEEEEecHHHHHhhc
Confidence 23377788889999998876
No 328
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.94 E-value=0.075 Score=60.69 Aligned_cols=39 Identities=10% Similarity=0.093 Sum_probs=32.7
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
|+.++.++++.|.... ..-+.++|.+|+|||++|..+..
T Consensus 178 r~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~ 216 (852)
T TIGR03346 178 RDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQ 216 (852)
T ss_pred cHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHH
Confidence 9999999999987653 23445899999999999998887
No 329
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=94.94 E-value=0.29 Score=47.35 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=20.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.+++|+|..|.|||||++.+.--
T Consensus 30 e~~~l~G~nGsGKSTLl~~l~Gl 52 (254)
T PRK10418 30 RVLALVGGSGSGKSLTCAAALGI 52 (254)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998864
No 330
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.94 E-value=0.28 Score=47.06 Aligned_cols=53 Identities=15% Similarity=0.132 Sum_probs=31.7
Q ss_pred HHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCCCCCCcEEEEEecchhhhh
Q 010117 264 SILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPDNQNGSRVLITLLWFELQK 316 (518)
Q Consensus 264 ~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~~~gskIivTTR~~~va~ 316 (518)
-.+...+-.+.=+|+||+--. |......+...+..-..+..||++|.+...+.
T Consensus 152 v~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~ 206 (242)
T TIGR03411 152 LEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVR 206 (242)
T ss_pred HHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHH
Confidence 345556666677999999876 44444444443332112456888888866544
No 331
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.92 E-value=0.084 Score=49.51 Aligned_cols=51 Identities=22% Similarity=0.309 Sum_probs=32.3
Q ss_pred HHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC--CCCCcEEEEEecchhhh
Q 010117 265 ILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD--NQNGSRVLITLLWFELQ 315 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~--~~~gskIivTTR~~~va 315 (518)
.+...+..+.=+++||+--. |......+...+.. ...|..||++|.+...+
T Consensus 138 ~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~ 192 (211)
T cd03298 138 ALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDA 192 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 34455556667999999866 45555555555542 12366788888876544
No 332
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.92 E-value=0.058 Score=58.17 Aligned_cols=73 Identities=16% Similarity=0.193 Sum_probs=50.7
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHH
Q 010117 188 PRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQ 267 (518)
Q Consensus 188 ~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 267 (518)
+.-++.-++|++|+||||||.-+.+..- | .++=|..|+.-+...+-..|...+....-
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~----------------- 381 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHSV----------------- 381 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhccc-----------------
Confidence 4568999999999999999999988422 2 25667777777666666666554433321
Q ss_pred HHh--ccCcEEEEEcCCCC
Q 010117 268 DYL--TAKKYFIVLDDVFD 284 (518)
Q Consensus 268 ~~L--~~kr~LlVLDdvw~ 284 (518)
+ .++..-||+|.+.-
T Consensus 382 --l~adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 382 --LDADSRPVCLVIDEIDG 398 (877)
T ss_pred --cccCCCcceEEEecccC
Confidence 1 14667789999876
No 333
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.91 E-value=0.38 Score=49.96 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=28.8
Q ss_pred hhhhHHHHHHHHhcC-------CCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEG-------PPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
+.--.+.|.++|... .....+|.++|..|+||||++..+..
T Consensus 75 ~~~v~~~L~~~l~~~~~~~~~~~~~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 75 QHAVFKELCNLVDPGVEAFTPKKGKQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred HHHHHHHHHHHhCCCCccccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 444455566655322 12468999999999999998887764
No 334
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=94.90 E-value=0.26 Score=48.83 Aligned_cols=126 Identities=13% Similarity=0.135 Sum_probs=67.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcc-cc---cc------------eEEEEEcCCC----CCHHH--------------
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVK-FY---FD------------CHAWVRVSIA----YDFGK-------------- 236 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~-~~---F~------------~~~wv~vs~~----~~~~~-------------- 236 (518)
.++++.|+.|.|||||.+.+..-.+-. .. +. .+.++.-... .++.+
T Consensus 32 ei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~ 111 (293)
T COG1131 32 EIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKE 111 (293)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChh
Confidence 699999999999999999998632111 00 10 1222211111 12222
Q ss_pred ----HHHHHHhhcCCCCCCC-ccccCCHH-HHHHHHHHHhccCcEEEEEcCCCC--Ch----HHHHHHhhhcCCCCCCcE
Q 010117 237 ----ILDDIINPVMPPSRVS-VIIGEDYQ-LKKSILQDYLTAKKYFIVLDDVFD--DS----EIWHDLVEFLPDNQNGSR 304 (518)
Q Consensus 237 ----i~~~i~~~l~~~~~~~-~~~~~~~~-~~~~~l~~~L~~kr~LlVLDdvw~--~~----~~~~~l~~~l~~~~~gsk 304 (518)
-..++++.++...... ....-+.. ...-.+...|-++.=|++||.--+ |+ ..|+.|+..-..+ |..
T Consensus 112 ~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g--~~t 189 (293)
T COG1131 112 EAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEG--GVT 189 (293)
T ss_pred HHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCC--CcE
Confidence 3334455554443100 01111222 222345566677788999999766 43 3444444332221 367
Q ss_pred EEEEecchhhhhhc
Q 010117 305 VLITLLWFELQKGE 318 (518)
Q Consensus 305 IivTTR~~~va~~~ 318 (518)
|++||...+-+..+
T Consensus 190 vlissH~l~e~~~~ 203 (293)
T COG1131 190 ILLSTHILEEAEEL 203 (293)
T ss_pred EEEeCCcHHHHHHh
Confidence 99999987666654
No 335
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.90 E-value=0.096 Score=53.21 Aligned_cols=114 Identities=12% Similarity=0.089 Sum_probs=66.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDY 269 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 269 (518)
-..|.|.|+.|.||||+...+.+ .+......+++. +.++... ........+... . ...+.......++..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~t-iEdp~E~--~~~~~~~~i~q~-e----vg~~~~~~~~~l~~~ 191 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMID--YINKNAAGHIIT-IEDPIEY--VHRNKRSLINQR-E----VGLDTLSFANALRAA 191 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEE-EcCChhh--hccCccceEEcc-c----cCCCCcCHHHHHHHh
Confidence 36899999999999999998887 444444455543 2222111 000000000000 0 011122356667888
Q ss_pred hccCcEEEEEcCCCCChHHHHHHhhhcCCCCCCcEEEEEecchhhhhh
Q 010117 270 LTAKKYFIVLDDVFDDSEIWHDLVEFLPDNQNGSRVLITLLWFELQKG 317 (518)
Q Consensus 270 L~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~va~~ 317 (518)
|+...=.|++|.+.+ .+.+.....+ ...|-.|+.|+...+++..
T Consensus 192 lr~~pd~i~vgEird-~~~~~~~l~a---a~tGh~v~~T~Ha~~~~~~ 235 (343)
T TIGR01420 192 LREDPDVILIGEMRD-LETVELALTA---AETGHLVFGTLHTNSAAQT 235 (343)
T ss_pred hccCCCEEEEeCCCC-HHHHHHHHHH---HHcCCcEEEEEcCCCHHHH
Confidence 888888999999998 7776653333 2335567777776665543
No 336
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.89 E-value=0.017 Score=53.73 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 010117 192 VVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~ 212 (518)
+|+|.|..|+||||||+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999877
No 337
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=94.89 E-value=0.25 Score=50.16 Aligned_cols=54 Identities=15% Similarity=0.256 Sum_probs=34.6
Q ss_pred HHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC--CCCCcEEEEEecchhhhhh
Q 010117 264 SILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD--NQNGSRVLITLLWFELQKG 317 (518)
Q Consensus 264 ~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~--~~~gskIivTTR~~~va~~ 317 (518)
-.|...|..+.=+|+||.--. |...-..+...+.. ...|..||++|.+.+.+..
T Consensus 149 v~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~ 206 (343)
T PRK11153 149 VAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKR 206 (343)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 345566667778999999866 45554555544442 1236778899888766543
No 338
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=94.89 E-value=0.18 Score=49.54 Aligned_cols=54 Identities=15% Similarity=0.130 Sum_probs=32.3
Q ss_pred HHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCCCCCCcEEEEEecchhhhhhc
Q 010117 265 ILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPDNQNGSRVLITLLWFELQKGE 318 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~~~gskIivTTR~~~va~~~ 318 (518)
.|...+-.+.=+|+||+... |......+...+.....++.||++|........|
T Consensus 148 ~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~ 203 (275)
T cd03289 148 CLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLEC 203 (275)
T ss_pred HHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhC
Confidence 34455555667899999876 4555555544444323466777777765544433
No 339
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.89 E-value=0.2 Score=48.17 Aligned_cols=127 Identities=15% Similarity=0.131 Sum_probs=69.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCccc---ccc--------------eEEEEEc----------------CCC-----
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKF---YFD--------------CHAWVRV----------------SIA----- 231 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~---~F~--------------~~~wv~v----------------s~~----- 231 (518)
-.+++|+|+.|+|||||.+.++.--.... .++ ..++|.= ++.
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~ 107 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGL 107 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCccccc
Confidence 47999999999999999999886321111 000 1222211 111
Q ss_pred -----CCHHHHHHHHHhhcCCCCCCC-cccc-CCHHHHHHHHHHHhccCcEEEEEcCCCC--C----hHHHHHHhhhcCC
Q 010117 232 -----YDFGKILDDIINPVMPPSRVS-VIIG-EDYQLKKSILQDYLTAKKYFIVLDDVFD--D----SEIWHDLVEFLPD 298 (518)
Q Consensus 232 -----~~~~~i~~~i~~~l~~~~~~~-~~~~-~~~~~~~~~l~~~L~~kr~LlVLDdvw~--~----~~~~~~l~~~l~~ 298 (518)
..-.++..+.++.++...-.. .... +.-+...-.+...|..+.=+|.||.=-+ | .+.++.++. +.
T Consensus 108 ~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~-l~- 185 (258)
T COG1120 108 FGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRD-LN- 185 (258)
T ss_pred ccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHH-HH-
Confidence 012224455555555433211 1122 2333334567778888888899998544 2 122222222 21
Q ss_pred CCCCcEEEEEecchhhhhhc
Q 010117 299 NQNGSRVLITLLWFELQKGE 318 (518)
Q Consensus 299 ~~~gskIivTTR~~~va~~~ 318 (518)
...|..||+++.+-+.|...
T Consensus 186 ~~~~~tvv~vlHDlN~A~ry 205 (258)
T COG1120 186 REKGLTVVMVLHDLNLAARY 205 (258)
T ss_pred HhcCCEEEEEecCHHHHHHh
Confidence 23477899999998777654
No 340
>PRK03839 putative kinase; Provisional
Probab=94.88 E-value=0.02 Score=52.33 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 010117 192 VVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.|.|+|++|+||||+|+.+.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999983
No 341
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.88 E-value=0.067 Score=59.00 Aligned_cols=94 Identities=18% Similarity=0.325 Sum_probs=57.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHcCCCccccc---ceEEEEEcCCCCCHHHHH-HHHHhh-cCCCCCCCccccCCHHHH
Q 010117 188 PRLSVVAILDSSGFEMTAFAADAFNNNHVKFYF---DCHAWVRVSIAYDFGKIL-DDIINP-VMPPSRVSVIIGEDYQLK 262 (518)
Q Consensus 188 ~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F---~~~~wv~vs~~~~~~~i~-~~i~~~-l~~~~~~~~~~~~~~~~~ 262 (518)
..+.+...+|+.|||||-||+.+... .| +.-+-+ |+.+.. +.-.+. +|.+. .-...++
T Consensus 519 rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~------DMSEy~EkHsVSrLIGaPP-----GYVGyee- 581 (786)
T COG0542 519 RPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRI------DMSEYMEKHSVSRLIGAPP-----GYVGYEE- 581 (786)
T ss_pred CCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceee------chHHHHHHHHHHHHhCCCC-----CCceecc-
Confidence 45677888999999999999988761 23 222222 333322 111222 23221 1112222
Q ss_pred HHHHHHHhccCcE-EEEEcCCCC-ChHHHHHHhhhcCC
Q 010117 263 KSILQDYLTAKKY-FIVLDDVFD-DSEIWHDLVEFLPD 298 (518)
Q Consensus 263 ~~~l~~~L~~kr~-LlVLDdvw~-~~~~~~~l~~~l~~ 298 (518)
--.|-+.++.+.| .|.||.|.. .++..+-+...|-+
T Consensus 582 GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 582 GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 3346667777877 888999987 58888888887764
No 342
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.88 E-value=0.094 Score=54.76 Aligned_cols=93 Identities=10% Similarity=0.192 Sum_probs=56.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCC-CHHHHHHHHHhhcCCCCCC---CccccCCHH-----H
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAY-DFGKILDDIINPVMPPSRV---SVIIGEDYQ-----L 261 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~---~~~~~~~~~-----~ 261 (518)
+.++|.|..|+|||||+.++..+..... =+.++++-+++.. .+.+++.++...-...... ...+..... .
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~ 223 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVAL 223 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 5799999999999999998765322111 1357777777665 4566777776532211110 000111111 2
Q ss_pred HHHHHHHHh---ccCcEEEEEcCCCC
Q 010117 262 KKSILQDYL---TAKKYFIVLDDVFD 284 (518)
Q Consensus 262 ~~~~l~~~L---~~kr~LlVLDdvw~ 284 (518)
..-.+.+++ +||+.||++||+-.
T Consensus 224 ~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 224 TGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHhcCCceEEEecchHH
Confidence 233466666 67999999999854
No 343
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.88 E-value=0.052 Score=54.03 Aligned_cols=89 Identities=15% Similarity=0.072 Sum_probs=55.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCc-cccCCHHHHHHHHH
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSV-IIGEDYQLKKSILQ 267 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~-~~~~~~~~~~~~l~ 267 (518)
.-+++-|+|..|+||||||..+.. ..+..-..++||.....++.. .++.++.+...-- ......++..+.+.
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHH
Confidence 357999999999999999999887 444445668999998887763 3444554432100 02334566666666
Q ss_pred HHhccC-cEEEEEcCCCC
Q 010117 268 DYLTAK-KYFIVLDDVFD 284 (518)
Q Consensus 268 ~~L~~k-r~LlVLDdvw~ 284 (518)
..++.. --++|+|-|-.
T Consensus 125 ~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHTTSESEEEEE-CTT
T ss_pred HHhhcccccEEEEecCcc
Confidence 666543 45899999865
No 344
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.88 E-value=0.043 Score=47.35 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
-.+|.+.|.-|.||||+++.+...
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999985
No 345
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.87 E-value=0.051 Score=51.74 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 010117 192 VVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.|.|+|++|+||||+|+.+...
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999999773
No 346
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.86 E-value=0.29 Score=42.98 Aligned_cols=22 Identities=9% Similarity=0.226 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 010117 192 VVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~d 213 (518)
+|.|+|+.|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4788999999999999999884
No 347
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=94.84 E-value=0.26 Score=49.95 Aligned_cols=54 Identities=15% Similarity=0.260 Sum_probs=34.5
Q ss_pred HHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC--CCCCcEEEEEecchhhhhh
Q 010117 264 SILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD--NQNGSRVLITLLWFELQKG 317 (518)
Q Consensus 264 ~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~--~~~gskIivTTR~~~va~~ 317 (518)
-.|...|..+.-+|++|.--+ |+..-..+...+.. ...|..||++|.+.+++..
T Consensus 149 V~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~ 206 (343)
T TIGR02314 149 VAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKR 206 (343)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 346666777788999999876 44443444433332 1236779999988777644
No 348
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.82 E-value=0.058 Score=50.75 Aligned_cols=90 Identities=12% Similarity=0.223 Sum_probs=52.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCC-CHHHHHHHHHhhcCCCCCC--CccccCCH-HH-----
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAY-DFGKILDDIINPVMPPSRV--SVIIGEDY-QL----- 261 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~--~~~~~~~~-~~----- 261 (518)
..++|+|..|+|||+|++.+.++.. =+..+++.+++.. ++.++.+++...-..+... ....+... ..
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 5789999999999999999988542 2334888887664 5566666664331110000 00011111 11
Q ss_pred HHHHHHHHh--ccCcEEEEEcCCCC
Q 010117 262 KKSILQDYL--TAKKYFIVLDDVFD 284 (518)
Q Consensus 262 ~~~~l~~~L--~~kr~LlVLDdvw~ 284 (518)
..-.+.+++ +||..|+++||+-.
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dsltr 116 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETHHH
T ss_pred cchhhhHHHhhcCCceeehhhhhHH
Confidence 112233444 58999999999744
No 349
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.80 E-value=0.49 Score=51.30 Aligned_cols=40 Identities=15% Similarity=-0.012 Sum_probs=30.6
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+..++.+.+.+..+. -...+-++|+.|+||||+|+.+.+
T Consensus 21 q~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAk 60 (559)
T PRK05563 21 QEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAK 60 (559)
T ss_pred cHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 5666677777776653 235567899999999999998876
No 350
>PRK06936 type III secretion system ATPase; Provisional
Probab=94.79 E-value=0.1 Score=54.12 Aligned_cols=91 Identities=10% Similarity=0.154 Sum_probs=54.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCC-CHHHHHHHHHhhcCCCCCC--CccccC-CHHH----
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAY-DFGKILDDIINPVMPPSRV--SVIIGE-DYQL---- 261 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~--~~~~~~-~~~~---- 261 (518)
-..++|.|..|+|||||.+.+++... -+.++.+-+++.. .+.++....+..-+..... ....+. ....
T Consensus 162 Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAG 237 (439)
T ss_pred CCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHH
Confidence 46899999999999999999998432 2567777777764 4455554443321111100 000111 1111
Q ss_pred -HHHHHHHHh--ccCcEEEEEcCCCC
Q 010117 262 -KKSILQDYL--TAKKYFIVLDDVFD 284 (518)
Q Consensus 262 -~~~~l~~~L--~~kr~LlVLDdvw~ 284 (518)
..-.+.+++ +||+.||++||+-.
T Consensus 238 ~~a~tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 238 FVATSIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhH
Confidence 122345555 57999999999854
No 351
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.78 E-value=0.026 Score=52.89 Aligned_cols=32 Identities=25% Similarity=0.266 Sum_probs=26.0
Q ss_pred HHhcCCCCceEEEEEcCCCccHHHHHHHHHcC
Q 010117 182 LLIEGPPRLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 182 ~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
|+.+.....++|.|+|+.|+|||||++.+...
T Consensus 5 ~~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 5 WLFNKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred cccCCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 34445556789999999999999999999763
No 352
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=94.76 E-value=0.26 Score=49.17 Aligned_cols=49 Identities=24% Similarity=0.403 Sum_probs=32.1
Q ss_pred HHHHHhccCcEEEEEcCCCC--Ch----HHHHHHhhhcCCCCCCcEEEEEecchhhhh
Q 010117 265 ILQDYLTAKKYFIVLDDVFD--DS----EIWHDLVEFLPDNQNGSRVLITLLWFELQK 316 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~--~~----~~~~~l~~~l~~~~~gskIivTTR~~~va~ 316 (518)
.+...|-.+.=+|+||.--. |+ ..|+.+... . ..|..||+||.+..-+.
T Consensus 148 ~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l-~--~~g~till~sH~l~e~~ 202 (306)
T PRK13537 148 TLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSL-L--ARGKTILLTTHFMEEAE 202 (306)
T ss_pred HHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-H--hCCCEEEEECCCHHHHH
Confidence 35566667778999999766 43 334444432 2 23778999999876544
No 353
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=94.76 E-value=0.036 Score=57.88 Aligned_cols=47 Identities=17% Similarity=0.121 Sum_probs=32.1
Q ss_pred hhhhHHHHHHHHh----cC-------CCCceEEEEEcCCCccHHHHHHHHHcCCCccccc
Q 010117 172 FERGREELFDLLI----EG-------PPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYF 220 (518)
Q Consensus 172 r~~~~~~l~~~L~----~~-------~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F 220 (518)
.+..+++|.+.+. .. -...+-+.++|++|+|||++|+.+.+ +....|
T Consensus 188 l~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f 245 (438)
T PTZ00361 188 LEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF 245 (438)
T ss_pred HHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE
Confidence 5556666655542 11 12345688999999999999999999 444444
No 354
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.75 E-value=0.1 Score=50.75 Aligned_cols=102 Identities=12% Similarity=0.133 Sum_probs=56.9
Q ss_pred eEEEEEcCCCccHHHHH-HHHHcCCCcccccceE-EEEEcCCCC-CHHHHHHHHHhhcCCCCCC---CccccCCHHH---
Q 010117 191 SVVAILDSSGFEMTAFA-ADAFNNNHVKFYFDCH-AWVRVSIAY-DFGKILDDIINPVMPPSRV---SVIIGEDYQL--- 261 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA-~~v~~d~~~~~~F~~~-~wv~vs~~~-~~~~i~~~i~~~l~~~~~~---~~~~~~~~~~--- 261 (518)
+.++|.|..|+|||+|| +.+.+. . +-+.+ +++-+++.. ++.++..++.+.-...... ...+......
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~--~--~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a 145 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQ--K--GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLA 145 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHh--c--CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHH
Confidence 57899999999999996 666652 1 22343 667777764 4566666665432111100 0001111111
Q ss_pred --HHHHHHHHh--ccCcEEEEEcCCCCChHHHHHHhhhc
Q 010117 262 --KKSILQDYL--TAKKYFIVLDDVFDDSEIWHDLVEFL 296 (518)
Q Consensus 262 --~~~~l~~~L--~~kr~LlVLDdvw~~~~~~~~l~~~l 296 (518)
..-.+.+++ +||..||++||+-.-...|.++...+
T Consensus 146 ~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEisl~~ 184 (274)
T cd01132 146 PYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQMSLLL 184 (274)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHHHHhc
Confidence 123334444 47999999999865234555555443
No 355
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=94.73 E-value=0.32 Score=52.37 Aligned_cols=126 Identities=9% Similarity=-0.017 Sum_probs=64.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCc-ccc--cc---------------eEEEEEcCC----CCCHH-------------
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHV-KFY--FD---------------CHAWVRVSI----AYDFG------------- 235 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~-~~~--F~---------------~~~wv~vs~----~~~~~------------- 235 (518)
.+++|+|+.|.|||||.+.+..-..- ... |+ .+.++.=.. ..++.
T Consensus 38 e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 117 (510)
T PRK15439 38 EVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQAS 117 (510)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccchHH
Confidence 58999999999999999999753111 010 11 122322110 01111
Q ss_pred -HHHHHHHhhcCCCCCC-CccccCCH-HHHHHHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC-CCCCcEEEEEe
Q 010117 236 -KILDDIINPVMPPSRV-SVIIGEDY-QLKKSILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD-NQNGSRVLITL 309 (518)
Q Consensus 236 -~i~~~i~~~l~~~~~~-~~~~~~~~-~~~~~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~-~~~gskIivTT 309 (518)
+-..++++.++..... ..+...+. +...-.|...|..+.-+|+||.--. |...-..+...+.. ...|..||++|
T Consensus 118 ~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivt 197 (510)
T PRK15439 118 MQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFIS 197 (510)
T ss_pred HHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 2233445555543211 11122222 2233356666667788999999766 43333333332221 12366789999
Q ss_pred cchhhhh
Q 010117 310 LWFELQK 316 (518)
Q Consensus 310 R~~~va~ 316 (518)
.+...+.
T Consensus 198 Hd~~~~~ 204 (510)
T PRK15439 198 HKLPEIR 204 (510)
T ss_pred CCHHHHH
Confidence 8865443
No 356
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.73 E-value=0.26 Score=46.78 Aligned_cols=98 Identities=15% Similarity=0.034 Sum_probs=55.2
Q ss_pred HHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC----------
Q 010117 182 LLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRV---------- 251 (518)
Q Consensus 182 ~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~---------- 251 (518)
+|..+=..-.++.|.|.+|+||||||.++.... .+ .-..++|++.... ...+... +++++.....
T Consensus 12 ~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~-~~-~g~~~~~is~e~~--~~~i~~~-~~~~g~~~~~~~~~~~l~i~ 86 (229)
T TIGR03881 12 LLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKG-LR-DGDPVIYVTTEES--RESIIRQ-AAQFGMDFEKAIEEGKLVII 86 (229)
T ss_pred hhcCCCcCCeEEEEECCCCCChHHHHHHHHHHH-Hh-cCCeEEEEEccCC--HHHHHHH-HHHhCCCHHHHhhcCCEEEE
Confidence 333342345799999999999999998865421 12 2345778876443 3344332 2222211000
Q ss_pred ----------CccccCCHHHHHHHHHHHhcc---CcEEEEEcCCCC
Q 010117 252 ----------SVIIGEDYQLKKSILQDYLTA---KKYFIVLDDVFD 284 (518)
Q Consensus 252 ----------~~~~~~~~~~~~~~l~~~L~~---kr~LlVLDdvw~ 284 (518)
......+.+++...+.+.++. +.-++|+|.+..
T Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~ 132 (229)
T TIGR03881 87 DALMKEKEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSA 132 (229)
T ss_pred EccccccccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchh
Confidence 000124566777777766643 345788888753
No 357
>PRK09099 type III secretion system ATPase; Provisional
Probab=94.69 E-value=0.13 Score=53.72 Aligned_cols=92 Identities=7% Similarity=0.062 Sum_probs=52.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC---CccccCCH-----HH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRV---SVIIGEDY-----QL 261 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~---~~~~~~~~-----~~ 261 (518)
-..++|.|..|+|||||.+.+....... ..+++..--+..++.++...+...-...... ...+.... ..
T Consensus 163 Gq~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~ 239 (441)
T PRK09099 163 GQRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAY 239 (441)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHH
Confidence 4689999999999999999998743321 1344433333445556656555432211100 00011111 11
Q ss_pred HHHHHHHHh--ccCcEEEEEcCCCC
Q 010117 262 KKSILQDYL--TAKKYFIVLDDVFD 284 (518)
Q Consensus 262 ~~~~l~~~L--~~kr~LlVLDdvw~ 284 (518)
..-.+.+++ +||..|+++||+-.
T Consensus 240 ~a~tiAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 240 VATAIAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhH
Confidence 223355555 47899999999855
No 358
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=94.69 E-value=0.35 Score=46.55 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=21.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.+++|+|..|.|||||.+.+...
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 28 EVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 58999999999999999999874
No 359
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.68 E-value=0.04 Score=50.55 Aligned_cols=37 Identities=11% Similarity=0.047 Sum_probs=29.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRV 228 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~v 228 (518)
.++|.|+|+.|+|||||++.+.. .....|...++.+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeecc
Confidence 47899999999999999999998 66677765555543
No 360
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.67 E-value=0.025 Score=51.54 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=20.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.++.|+|+.|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998774
No 361
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.65 E-value=0.026 Score=51.48 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=20.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
++|.|+|+.|+|||||++.+.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999998
No 362
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=94.65 E-value=0.39 Score=47.88 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=21.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.+++|+|..|.|||||.+.+..-
T Consensus 31 e~~~l~G~NGaGKSTLl~~l~Gl 53 (303)
T TIGR01288 31 ECFGLLGPNGAGKSTIARMLLGM 53 (303)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999763
No 363
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.64 E-value=0.1 Score=47.55 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 010117 192 VVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.|.|.|.+|.||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999984
No 364
>PRK13409 putative ATPase RIL; Provisional
Probab=94.61 E-value=0.26 Score=53.88 Aligned_cols=126 Identities=12% Similarity=0.029 Sum_probs=66.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcc-cc--cceEEEEEcCCCC------CHHHH-------------HHHHHhhcCCC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVK-FY--FDCHAWVRVSIAY------DFGKI-------------LDDIINPVMPP 248 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~-~~--F~~~~wv~vs~~~------~~~~i-------------~~~i~~~l~~~ 248 (518)
.+++|+|..|+|||||++.+.....-. .. |+..+. .+.+.+ ++.+. ..++++.++..
T Consensus 366 eiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~-y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~ 444 (590)
T PRK13409 366 EVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKIS-YKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLE 444 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEE-EecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCH
Confidence 589999999999999999998642111 11 111110 122221 22222 23334444332
Q ss_pred CC-CCccccCCHHHH-HHHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC--CCCCcEEEEEecchhhhhh
Q 010117 249 SR-VSVIIGEDYQLK-KSILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD--NQNGSRVLITLLWFELQKG 317 (518)
Q Consensus 249 ~~-~~~~~~~~~~~~-~~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~--~~~gskIivTTR~~~va~~ 317 (518)
.. ...+...+..+. .-.+...|..+.=+++||.--. |...-..+...+.. ...|..||++|.+...+..
T Consensus 445 ~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~ 519 (590)
T PRK13409 445 RLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDY 519 (590)
T ss_pred HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 11 011223333333 3356677777888999998765 44443444333331 1235668888888765543
No 365
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.61 E-value=0.33 Score=47.65 Aligned_cols=53 Identities=21% Similarity=0.376 Sum_probs=33.6
Q ss_pred HHHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC--CCCCcEEEEEecchhhh
Q 010117 263 KSILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD--NQNGSRVLITLLWFELQ 315 (518)
Q Consensus 263 ~~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~--~~~gskIivTTR~~~va 315 (518)
.-.+...|..+.=+|+||+.-. |...-..+...+.. ...|..||++|.+.+.+
T Consensus 145 rl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~ 201 (277)
T PRK13652 145 RVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLV 201 (277)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 3456666777778999999876 44444555444432 12266788888886544
No 366
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.61 E-value=0.4 Score=47.36 Aligned_cols=53 Identities=8% Similarity=0.179 Sum_probs=33.9
Q ss_pred HHHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC--CCCCcEEEEEecchhhh
Q 010117 263 KSILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD--NQNGSRVLITLLWFELQ 315 (518)
Q Consensus 263 ~~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~--~~~gskIivTTR~~~va 315 (518)
.-.|...|..+.=+|+||+--. |......+...+.. ...|..||++|.+...+
T Consensus 152 rv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~ 208 (287)
T PRK13637 152 RVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDV 208 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 3456677777888999999866 45444444444432 12366788888876544
No 367
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.60 E-value=0.21 Score=47.92 Aligned_cols=21 Identities=14% Similarity=0.080 Sum_probs=18.6
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 010117 192 VVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~ 212 (518)
+..|+|++|+|||+||..+.-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999988875
No 368
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.59 E-value=0.029 Score=49.07 Aligned_cols=38 Identities=13% Similarity=0.120 Sum_probs=26.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcc-cccceEEEEEcCC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVK-FYFDCHAWVRVSI 230 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~-~~F~~~~wv~vs~ 230 (518)
++|.|+|..|+|||||++.+.+ ... ..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~--~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLIN--ELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHhHcCCceEEEEEccC
Confidence 5899999999999999999998 343 3455555555444
No 369
>PLN02318 phosphoribulokinase/uridine kinase
Probab=94.58 E-value=0.043 Score=58.61 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=26.9
Q ss_pred HHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 180 FDLLIEGPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 180 ~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
++.|........+|+|.|..|.||||||+.+..
T Consensus 55 ~qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lag 87 (656)
T PLN02318 55 CQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLN 87 (656)
T ss_pred HHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHh
Confidence 344444545688999999999999999999987
No 370
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.58 E-value=0.33 Score=46.25 Aligned_cols=54 Identities=11% Similarity=0.087 Sum_probs=33.3
Q ss_pred HHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCCCCCCcEEEEEecchhhhhhc
Q 010117 265 ILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPDNQNGSRVLITLLWFELQKGE 318 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~~~gskIivTTR~~~va~~~ 318 (518)
.+...+..+.=+++||+--. |......+...+..-..|..||++|.+......|
T Consensus 148 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~ 203 (234)
T cd03251 148 AIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENA 203 (234)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhC
Confidence 45555556667999999866 4554455544443222366788888877665434
No 371
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.57 E-value=0.027 Score=51.96 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
..+|+|-||=|+||||||+.+.++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 478999999999999999999984
No 372
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.57 E-value=0.5 Score=47.12 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
-.+++|+|..|.|||||.+.+...
T Consensus 71 Ge~~~IvG~nGsGKSTLl~~L~Gl 94 (305)
T PRK14264 71 KSVTALIGPSGCGKSTFLRCLNRM 94 (305)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999999753
No 373
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.56 E-value=0.12 Score=57.89 Aligned_cols=39 Identities=21% Similarity=0.126 Sum_probs=32.4
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
|+++.+++++.|.... ..-+.++|.+|+|||++|+.+.+
T Consensus 191 R~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 191 REKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred CCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 9999999999887753 23345799999999999999886
No 374
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=94.55 E-value=0.15 Score=45.69 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=29.4
Q ss_pred CcEEEEEcCCCC--ChHHHHHHhhhcCC-CCCCcEEEEEecchhhhhhc
Q 010117 273 KKYFIVLDDVFD--DSEIWHDLVEFLPD-NQNGSRVLITLLWFELQKGE 318 (518)
Q Consensus 273 kr~LlVLDdvw~--~~~~~~~l~~~l~~-~~~gskIivTTR~~~va~~~ 318 (518)
++-|+++|+.-. +...-..+...+.. ...|+.+|+||.+..++..+
T Consensus 99 ~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~ 147 (162)
T cd03227 99 PRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELA 147 (162)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhh
Confidence 678999999877 44433333333321 11278899999988876643
No 375
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=94.51 E-value=0.045 Score=61.56 Aligned_cols=123 Identities=12% Similarity=0.089 Sum_probs=62.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHH
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQD 268 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 268 (518)
..+++.|.|+.+.||||+.+.+.-.. -...+..+|++.... ...++..|+..++...... ....+...-...+..
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~---~maq~G~~vpa~~~~-~i~~~~~i~~~ig~~~si~-~~lStfS~~m~~~~~ 400 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAA---LMAKSGLPIPANEPS-EIPVFKEIFADIGDEQSIE-QSLSTFSGHMTNIVR 400 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHH---HHHHhCCCcccCCCc-cccccceEEEecCCccchh-hchhHHHHHHHHHHH
Confidence 45789999999999999988875310 011222233332111 0111222222222221100 011111112222233
Q ss_pred Hhc--cCcEEEEEcCCCC--ChHHHHHH----hhhcCCCCCCcEEEEEecchhhhhhc
Q 010117 269 YLT--AKKYFIVLDDVFD--DSEIWHDL----VEFLPDNQNGSRVLITLLWFELQKGE 318 (518)
Q Consensus 269 ~L~--~kr~LlVLDdvw~--~~~~~~~l----~~~l~~~~~gskIivTTR~~~va~~~ 318 (518)
.+. ..+-|++||..-. ++..-..+ ...+. ..|+.+|+||....++...
T Consensus 401 Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~ 456 (782)
T PRK00409 401 ILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALM 456 (782)
T ss_pred HHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHH
Confidence 332 4778999999986 44433333 22332 2478999999998887655
No 376
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.51 E-value=0.42 Score=46.16 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=20.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.+++|+|..|.|||||.+.+..-
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14249 31 QITAIIGPSGCGKSTLLRALNRM 53 (251)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999999763
No 377
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.50 E-value=0.033 Score=62.45 Aligned_cols=123 Identities=15% Similarity=0.118 Sum_probs=61.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHH
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQD 268 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 268 (518)
+..++.|+|+.|.|||||.+.+.-.. -...+..+|..+.... ..++.++...++...... ....+...-...+..
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~---l~aq~G~~Vpa~~~~~-~~~~d~i~~~i~~~~si~-~~LStfS~~m~~~~~ 395 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLA---LMFQSGIPIPANEHSE-IPYFEEIFADIGDEQSIE-QNLSTFSGHMKNISA 395 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHH---HHHHhCCCccCCcccc-ccchhheeeecChHhHHh-hhhhHHHHHHHHHHH
Confidence 35799999999999999998886420 0011112222222100 011122222221111000 000011111122233
Q ss_pred Hhc--cCcEEEEEcCCCC--ChHHHHHH----hhhcCCCCCCcEEEEEecchhhhhhc
Q 010117 269 YLT--AKKYFIVLDDVFD--DSEIWHDL----VEFLPDNQNGSRVLITLLWFELQKGE 318 (518)
Q Consensus 269 ~L~--~kr~LlVLDdvw~--~~~~~~~l----~~~l~~~~~gskIivTTR~~~va~~~ 318 (518)
.+. .++-|++||..-. ++.....+ ...+. ..|+.+|+||....+....
T Consensus 396 il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~ 451 (771)
T TIGR01069 396 ILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALM 451 (771)
T ss_pred HHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHh
Confidence 332 4789999999987 44444333 22332 3588999999998876543
No 378
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=94.50 E-value=0.5 Score=48.17 Aligned_cols=124 Identities=11% Similarity=0.050 Sum_probs=65.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCccc---ccce------------------EEEEEcCCCC------CHH--------
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKF---YFDC------------------HAWVRVSIAY------DFG-------- 235 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~---~F~~------------------~~wv~vs~~~------~~~-------- 235 (518)
.+++|+|..|.|||||.+.+..-..... .|+. +.+ +.+.+ ++.
T Consensus 25 e~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~--v~q~~~l~~~~tv~enl~~~~~ 102 (352)
T PRK11144 25 GITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGY--VFQDARLFPHYKVRGNLRYGMA 102 (352)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEE--EcCCcccCCCCcHHHHHHhhhh
Confidence 5899999999999999999976321110 0111 111 11211 111
Q ss_pred ----HHHHHHHhhcCCCCC-CCccccCCHHH-HHHHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC--CCCCcEE
Q 010117 236 ----KILDDIINPVMPPSR-VSVIIGEDYQL-KKSILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD--NQNGSRV 305 (518)
Q Consensus 236 ----~i~~~i~~~l~~~~~-~~~~~~~~~~~-~~~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~--~~~gskI 305 (518)
+-..++++.++.... ...+...+..+ ..-.|...|..+.-+|+||+--. |...-..+...+.. ...|..|
T Consensus 103 ~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~ti 182 (352)
T PRK11144 103 KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPI 182 (352)
T ss_pred hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeE
Confidence 122344555544321 01122223333 23356666777778999999766 44433444333331 1225668
Q ss_pred EEEecchhhhh
Q 010117 306 LITLLWFELQK 316 (518)
Q Consensus 306 ivTTR~~~va~ 316 (518)
|++|.+...+.
T Consensus 183 i~vTHd~~~~~ 193 (352)
T PRK11144 183 LYVSHSLDEIL 193 (352)
T ss_pred EEEecCHHHHH
Confidence 88888876443
No 379
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=94.50 E-value=0.12 Score=53.79 Aligned_cols=95 Identities=11% Similarity=0.142 Sum_probs=59.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCccc--ccc---------eEEEEEcCCCCCHHHHHHHHHhhcC-CCCCC---Ccc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKF--YFD---------CHAWVRVSIAYDFGKILDDIINPVM-PPSRV---SVI 254 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~--~F~---------~~~wv~vs~~~~~~~i~~~i~~~l~-~~~~~---~~~ 254 (518)
=+.++|.|-.|+|||||+.++.+..+... ..| .++++-+++..+..+.+.+.+..-+ ..... ...
T Consensus 141 GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~ats 220 (466)
T TIGR01040 141 GQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLA 220 (466)
T ss_pred CCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECC
Confidence 35799999999999999999887543210 012 5678888888777776666666544 11110 000
Q ss_pred ccCCHH-----HHHHHHHHHhc---cCcEEEEEcCCCC
Q 010117 255 IGEDYQ-----LKKSILQDYLT---AKKYFIVLDDVFD 284 (518)
Q Consensus 255 ~~~~~~-----~~~~~l~~~L~---~kr~LlVLDdvw~ 284 (518)
+..... .....+.++++ |++.|+++||+-.
T Consensus 221 d~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 221 NDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 111111 12334667776 5899999999954
No 380
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.50 E-value=0.12 Score=53.72 Aligned_cols=91 Identities=12% Similarity=0.140 Sum_probs=52.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCC-CCHHHHHHHHHhhcCCCCCC---CccccCCHHHH---
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIA-YDFGKILDDIINPVMPPSRV---SVIIGEDYQLK--- 262 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~~~~~---~~~~~~~~~~~--- 262 (518)
-..++|+|..|+|||||.+.+.+.. +.+..+++.+++. ..+.+++.+....-...... ...+....+..
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~ 230 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL 230 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHH
Confidence 4689999999999999999998732 2344566666554 34556666554311000000 00011111121
Q ss_pred --HHHHHHHh--ccCcEEEEEcCCCC
Q 010117 263 --KSILQDYL--TAKKYFIVLDDVFD 284 (518)
Q Consensus 263 --~~~l~~~L--~~kr~LlVLDdvw~ 284 (518)
...+.+++ +||+.||++||+-.
T Consensus 231 ~~a~tiAEyfrd~G~~VLl~~Dsltr 256 (433)
T PRK07594 231 FVATTIAEFFRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCHHH
Confidence 23355555 47899999999854
No 381
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.49 E-value=0.41 Score=44.57 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=21.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.+++|+|..|.|||||++.+..-
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhccc
Confidence 69999999999999999998874
No 382
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.49 E-value=0.07 Score=46.33 Aligned_cols=37 Identities=8% Similarity=0.117 Sum_probs=27.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYD 233 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~ 233 (518)
.+-|.|.|.+|+||||||..+..... .-|+++|+-..
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~-------~~~i~isd~vk 43 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTG-------LEYIEISDLVK 43 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhC-------CceEehhhHHh
Confidence 35588999999999999999886211 23677766543
No 383
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.49 E-value=0.024 Score=52.06 Aligned_cols=22 Identities=18% Similarity=0.028 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 010117 192 VVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~d 213 (518)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999883
No 384
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=0.19 Score=52.48 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=36.1
Q ss_pred hhhhHHHHHHHHhcCC-------CCceEEEEEcCCCccHHHHHHHHHcCCCc
Q 010117 172 FERGREELFDLLIEGP-------PRLSVVAILDSSGFEMTAFAADAFNNNHV 216 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~-------~~~~vi~I~G~gGvGKTtLA~~v~~d~~~ 216 (518)
-..+.++|++.|.++. .-.+=|.++|++|.|||-||++|.-...|
T Consensus 312 AK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V 363 (752)
T KOG0734|consen 312 AKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV 363 (752)
T ss_pred HHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC
Confidence 5567889999998752 23566889999999999999999985544
No 385
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=94.47 E-value=0.48 Score=52.42 Aligned_cols=53 Identities=23% Similarity=0.223 Sum_probs=32.6
Q ss_pred HHHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCCCCCCcEEEEEecchhhhhh
Q 010117 263 KSILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPDNQNGSRVLITLLWFELQKG 317 (518)
Q Consensus 263 ~~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~~~gskIivTTR~~~va~~ 317 (518)
.-.|...|-.+.=+|+||.--+ |...-..+...+..-. + .||++|.+...+..
T Consensus 164 Rv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~-~-tvlivsHd~~~l~~ 218 (635)
T PRK11147 164 KAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ-G-SIIFISHDRSFIRN 218 (635)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC-C-EEEEEeCCHHHHHH
Confidence 3445666666777999999876 4444444444443222 4 58888888765543
No 386
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.47 E-value=0.12 Score=49.99 Aligned_cols=21 Identities=10% Similarity=0.292 Sum_probs=19.0
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 010117 192 VVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.|.++|++|+||||+|+.+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999886
No 387
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.47 E-value=0.42 Score=45.57 Aligned_cols=52 Identities=15% Similarity=0.116 Sum_probs=33.2
Q ss_pred HHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCCC--CCCcEEEEEecchhhh
Q 010117 264 SILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPDN--QNGSRVLITLLWFELQ 315 (518)
Q Consensus 264 ~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~--~~gskIivTTR~~~va 315 (518)
-.+...+..+.=+++||+.-. |......+...+..- ..|..||++|.+....
T Consensus 139 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~ 194 (232)
T cd03300 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEA 194 (232)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 345566666777999999876 455555555544421 2267788888776543
No 388
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.46 E-value=0.095 Score=54.93 Aligned_cols=38 Identities=13% Similarity=0.056 Sum_probs=31.3
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
+++.++.+...+..+ .-|-|.|++|+|||+||+.+...
T Consensus 25 re~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 25 RSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred cHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHH
Confidence 677777777777765 35889999999999999999873
No 389
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.45 E-value=0.31 Score=47.81 Aligned_cols=53 Identities=25% Similarity=0.302 Sum_probs=32.4
Q ss_pred HHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC-CCCCcEEEEEecchhhhh
Q 010117 264 SILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD-NQNGSRVLITLLWFELQK 316 (518)
Q Consensus 264 ~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~-~~~gskIivTTR~~~va~ 316 (518)
-.+...+..+.=+++||+... |......+...+.. ...|..||++|.+...+.
T Consensus 146 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~ 201 (275)
T PRK13639 146 VAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVP 201 (275)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 345555666777999999877 45555455444432 113666888887765443
No 390
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.44 E-value=0.032 Score=50.35 Aligned_cols=23 Identities=4% Similarity=-0.042 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
...|.|+|++|+||||+|+.+..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999988
No 391
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.43 E-value=0.24 Score=46.66 Aligned_cols=21 Identities=14% Similarity=0.018 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 010117 192 VVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998876
No 392
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=94.42 E-value=0.53 Score=51.24 Aligned_cols=23 Identities=9% Similarity=0.072 Sum_probs=21.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.+++|+|..|+|||||.+.+...
T Consensus 34 e~~~iiG~NGsGKSTLlk~i~G~ 56 (556)
T PRK11819 34 AKIGVLGLNGAGKSTLLRIMAGV 56 (556)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 393
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.42 E-value=0.16 Score=52.61 Aligned_cols=91 Identities=14% Similarity=0.155 Sum_probs=50.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCC-CCCHHHHHHHHHhhcCCCCCC---CccccCCHHH----
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSI-AYDFGKILDDIINPVMPPSRV---SVIIGEDYQL---- 261 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~~~---~~~~~~~~~~---- 261 (518)
-..++|+|..|+|||||.+.+..... . +..+.+.+.. .-.+.++..+.+..-+..... ...+......
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~--~--~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTD--A--DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC--C--CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 35799999999999999998887422 1 2222233333 334555665554432211110 0001111111
Q ss_pred -HHHHHHHHh--ccCcEEEEEcCCCC
Q 010117 262 -KKSILQDYL--TAKKYFIVLDDVFD 284 (518)
Q Consensus 262 -~~~~l~~~L--~~kr~LlVLDdvw~ 284 (518)
....+.+++ +|++.||++||+-.
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhH
Confidence 223355665 57899999999855
No 394
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.41 E-value=0.27 Score=48.24 Aligned_cols=91 Identities=12% Similarity=0.083 Sum_probs=49.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC---CccccCCHHHHHH
Q 010117 188 PRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRV---SVIIGEDYQLKKS 264 (518)
Q Consensus 188 ~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~---~~~~~~~~~~~~~ 264 (518)
.+..+|.|+|..|.|||||...+.+ .........+. .....+..+ .+.+...+.+.-+ ...-..+...+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~--~l~~~~~~~VI--~gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~~ 175 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLM--RLKDSVPCAVI--EGDQQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIAD 175 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HhccCCCEEEE--CCCcCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHHH
Confidence 3689999999999999999999988 44433322222 222222222 1122333222110 0012234444555
Q ss_pred HHHHHhccCcEEEEEcCCCC
Q 010117 265 ILQDYLTAKKYFIVLDDVFD 284 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~ 284 (518)
.+........=+|++++|-+
T Consensus 176 Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 176 AAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHHhhcCCcEEEEECCCC
Confidence 55555444456778899865
No 395
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.41 E-value=0.38 Score=52.76 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
-..++|+|..|.|||||++.+..-
T Consensus 376 G~~vaIvG~SGsGKSTL~~lL~g~ 399 (588)
T PRK11174 376 GQRIALVGPSGAGKTSLLNALLGF 399 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999998764
No 396
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.40 E-value=0.15 Score=56.78 Aligned_cols=97 Identities=20% Similarity=0.115 Sum_probs=61.9
Q ss_pred HHHh-cCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCC-ccccCC
Q 010117 181 DLLI-EGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVS-VIIGED 258 (518)
Q Consensus 181 ~~L~-~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~-~~~~~~ 258 (518)
.+|. .+=..-+++-|.|..|+||||||.++... ....=..++|+.....++. ..+++++.....- .....+
T Consensus 50 ~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~ 122 (790)
T PRK09519 50 VALGIGGLPRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDT 122 (790)
T ss_pred HhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCC
Confidence 3443 34345688999999999999999776552 2222345789988777774 3566666543210 012334
Q ss_pred HHHHHHHHHHHhcc-CcEEEEEcCCCC
Q 010117 259 YQLKKSILQDYLTA-KKYFIVLDDVFD 284 (518)
Q Consensus 259 ~~~~~~~l~~~L~~-kr~LlVLDdvw~ 284 (518)
.++....+...++. +--|||+|.+-.
T Consensus 123 ~E~~l~~i~~lv~~~~~~LVVIDSI~a 149 (790)
T PRK09519 123 GEQALEIADMLIRSGALDIVVIDSVAA 149 (790)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEcchhh
Confidence 45666666666644 566899999863
No 397
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.40 E-value=0.064 Score=52.38 Aligned_cols=22 Identities=9% Similarity=-0.026 Sum_probs=17.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
+.|.|+|.+|+||||+|+.+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~ 23 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKK 23 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHH
Confidence 4689999999999999999887
No 398
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.39 E-value=0.076 Score=51.68 Aligned_cols=41 Identities=17% Similarity=0.077 Sum_probs=29.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCC
Q 010117 188 PRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSI 230 (518)
Q Consensus 188 ~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~ 230 (518)
..-+++.|.|.+|+|||++|.++... ..+. =..+++++.-.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~-~a~~-Ge~vlyis~Ee 74 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVT-QASR-GNPVLFVTVES 74 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHH-HHhC-CCcEEEEEecC
Confidence 34579999999999999999987553 1222 23567777754
No 399
>CHL00195 ycf46 Ycf46; Provisional
Probab=94.38 E-value=0.2 Score=53.15 Aligned_cols=25 Identities=12% Similarity=0.037 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
..+-|-++|++|+|||.+|+.+.+.
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e 282 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIAND 282 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHH
Confidence 3566889999999999999999983
No 400
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=94.38 E-value=0.42 Score=48.80 Aligned_cols=23 Identities=26% Similarity=0.145 Sum_probs=20.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.+++|+|..|.|||||.+.+..-
T Consensus 24 ei~~l~G~nGsGKSTLl~~iaGl 46 (354)
T TIGR02142 24 GVTAIFGRSGSGKTTLIRLIAGL 46 (354)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999764
No 401
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.38 E-value=0.05 Score=47.92 Aligned_cols=44 Identities=18% Similarity=0.184 Sum_probs=32.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCC
Q 010117 192 VVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPP 248 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 248 (518)
+|.|-|++|+||||+|+.+.++.-.. | .+.-.++++|++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~-----------vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--L-----------VSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--e-----------eeccHHHHHHHHHcCCC
Confidence 68999999999999999999843222 1 13346777777766654
No 402
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.38 E-value=0.48 Score=46.22 Aligned_cols=52 Identities=6% Similarity=-0.046 Sum_probs=34.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhh
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINP 244 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 244 (518)
-.++.|.|.+|+||||++.++..... ..+=..++|++.-. +..++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 45888999999999999998876321 22123477887655 345566655544
No 403
>PRK00625 shikimate kinase; Provisional
Probab=94.37 E-value=0.03 Score=50.82 Aligned_cols=21 Identities=10% Similarity=0.058 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 010117 192 VVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.|.++||.|+||||+++.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 404
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=94.35 E-value=0.36 Score=49.53 Aligned_cols=23 Identities=13% Similarity=0.096 Sum_probs=20.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.+++|+|..|.|||||.+.+.--
T Consensus 30 e~~~l~G~nGsGKSTLL~~iaGl 52 (369)
T PRK11000 30 EFVVFVGPSGCGKSTLLRMIAGL 52 (369)
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999999753
No 405
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.32 E-value=0.4 Score=52.39 Aligned_cols=24 Identities=17% Similarity=0.099 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
-..++|+|..|.|||||++.+..-
T Consensus 366 G~~~aivG~sGsGKSTL~~ll~g~ 389 (574)
T PRK11160 366 GEKVALLGRTGCGKSTLLQLLTRA 389 (574)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999763
No 406
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.32 E-value=0.2 Score=56.05 Aligned_cols=23 Identities=30% Similarity=0.255 Sum_probs=21.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.-|-|+|..|+|||++|+.+++.
T Consensus 400 ~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 400 STVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred CCEEEECCCCcCHHHHHHHHHHh
Confidence 56889999999999999999985
No 407
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=94.32 E-value=0.3 Score=46.10 Aligned_cols=126 Identities=13% Similarity=0.188 Sum_probs=59.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHHh
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDYL 270 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L 270 (518)
.++.|+|+.|.||||+.+.+....-.. + ....+.... ..+ ....+|...++...... ........-...+...+
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~~l~-~--~g~~vp~~~-~~i-~~~~~i~~~~~~~~~ls-~g~s~f~~e~~~l~~~l 104 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIALLA-Q--IGSFVPASK-AEI-GVVDRIFTRIGASDDLA-GGRSTFMVEMVETANIL 104 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHh-c--cCCeecccc-cee-cceeeEeccCCchhhhc-cCcchHHHHHHHHHHHH
Confidence 789999999999999999875311000 0 001111000 000 00001111111111100 01111111112334444
Q ss_pred c--cCcEEEEEcCCCC--ChHH----HHHHhhhcCCCCCCcEEEEEecchhhhhhccCCCc
Q 010117 271 T--AKKYFIVLDDVFD--DSEI----WHDLVEFLPDNQNGSRVLITLLWFELQKGEKIQPD 323 (518)
Q Consensus 271 ~--~kr~LlVLDdvw~--~~~~----~~~l~~~l~~~~~gskIivTTR~~~va~~~~~~Pl 323 (518)
. .++-|++||.... +..+ ...+...+... .++.+|+||...++...+..+|.
T Consensus 105 ~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~~~~~~ 164 (216)
T cd03284 105 NNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEK-IGAKTLFATHYHELTELEGKLPR 164 (216)
T ss_pred HhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHhhcCCC
Confidence 3 5788999999832 1111 22333333322 36789999999887776655553
No 408
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.31 E-value=0.041 Score=49.80 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
..++++|+|..|+|||||+..+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 467999999999999999999987
No 409
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.30 E-value=0.26 Score=48.04 Aligned_cols=122 Identities=16% Similarity=0.152 Sum_probs=68.5
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEE-EEcCCCCCHHHHHHHHHhhcCCCCC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAW-VRVSIAYDFGKILDDIINPVMPPSR 250 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~w-v~vs~~~~~~~i~~~i~~~l~~~~~ 250 (518)
-+..+.-+.+.+.. ...+....+|++|.|||+-|......---.+.|.+++- .++|..-.+. +.+.
T Consensus 41 Qe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~---------- 107 (346)
T KOG0989|consen 41 QEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVRE---------- 107 (346)
T ss_pred hHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhh----------
Confidence 44455555665555 35788999999999999998887764333455766553 4444432221 0000
Q ss_pred CCccccCCHHHHHHHHHHHh--ccCc-EEEEEcCCCC-ChHHHHHHhhhcCCCCCCcE-EEEEec
Q 010117 251 VSVIIGEDYQLKKSILQDYL--TAKK-YFIVLDDVFD-DSEIWHDLVEFLPDNQNGSR-VLITLL 310 (518)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~L--~~kr-~LlVLDdvw~-~~~~~~~l~~~l~~~~~gsk-IivTTR 310 (518)
...+...+........ ..+. =.+|||++.. ..+.|..++.........++ |+||+-
T Consensus 108 ----Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcny 168 (346)
T KOG0989|consen 108 ----KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNY 168 (346)
T ss_pred ----hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCC
Confidence 0111111111111000 0123 3788999987 57899999988876444555 455543
No 410
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.30 E-value=0.13 Score=47.20 Aligned_cols=125 Identities=11% Similarity=0.061 Sum_probs=63.4
Q ss_pred hhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHH-HHHHHhhcCCCCCCC
Q 010117 174 RGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKI-LDDIINPVMPPSRVS 252 (518)
Q Consensus 174 ~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i-~~~i~~~l~~~~~~~ 252 (518)
.+...++...... -..+.|+|..|.|||||++.+.. .+...- ..+-+ -..... .+ ..... ++.....
T Consensus 12 ~~~~~~l~~~v~~---g~~i~I~G~tGSGKTTll~aL~~--~i~~~~-~~i~i--ed~~E~-~~~~~~~~-~~~~~~~-- 79 (186)
T cd01130 12 PLQAAYLWLAVEA---RKNILISGGTGSGKTTLLNALLA--FIPPDE-RIITI--EDTAEL-QLPHPNWV-RLVTRPG-- 79 (186)
T ss_pred HHHHHHHHHHHhC---CCEEEEECCCCCCHHHHHHHHHh--hcCCCC-CEEEE--CCcccc-CCCCCCEE-EEEEecC--
Confidence 3444455544443 36899999999999999998886 232211 12211 111000 00 00000 0000000
Q ss_pred ccccCCHHHHHHHHHHHhccCcEEEEEcCCCCChHHHHHHhhhcCCCCCCcE-EEEEecchhhh
Q 010117 253 VIIGEDYQLKKSILQDYLTAKKYFIVLDDVFDDSEIWHDLVEFLPDNQNGSR-VLITLLWFELQ 315 (518)
Q Consensus 253 ~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gsk-IivTTR~~~va 315 (518)
...........+.++..++...=.++++.+.+ .+.|..+... .. |-. ++-|....++.
T Consensus 80 ~~~~~~~~~~~~~l~~~lR~~pd~i~igEir~-~ea~~~~~a~-~t---Gh~g~~~T~Ha~s~~ 138 (186)
T cd01130 80 NVEGSGEVTMADLLRSALRMRPDRIIVGEVRG-GEALDLLQAM-NT---GHPGGMTTIHANSAE 138 (186)
T ss_pred CCCCCCccCHHHHHHHHhccCCCEEEEEccCc-HHHHHHHHHH-hc---CCCCceeeecCCCHH
Confidence 00111223345566677777777889999999 7777755543 22 444 45554444433
No 411
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.29 E-value=0.17 Score=53.21 Aligned_cols=94 Identities=10% Similarity=0.062 Sum_probs=53.9
Q ss_pred eEEEEEcCCCccHHHHH-HHHHcCCCc-----ccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC----CccccCCHH
Q 010117 191 SVVAILDSSGFEMTAFA-ADAFNNNHV-----KFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRV----SVIIGEDYQ 260 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA-~~v~~d~~~-----~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~----~~~~~~~~~ 260 (518)
+.++|.|-.|+|||+|| -.+.|...+ .++-..++++-+++......-+.+.++.-+.-... ...++....
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~ 269 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGL 269 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHH
Confidence 57899999999999997 555664322 12345678888888865433344444443311110 000111111
Q ss_pred H-----HHHHHHHHh--ccCcEEEEEcCCCC
Q 010117 261 L-----KKSILQDYL--TAKKYFIVLDDVFD 284 (518)
Q Consensus 261 ~-----~~~~l~~~L--~~kr~LlVLDdvw~ 284 (518)
+ ....+.+++ +|+..|||+||+-.
T Consensus 270 r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 270 QYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 1 123344555 47899999999965
No 412
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.28 E-value=0.037 Score=48.19 Aligned_cols=22 Identities=9% Similarity=0.270 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 010117 192 VVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.|.|+|+.|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999883
No 413
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.27 E-value=0.14 Score=53.91 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
-.|++++|+.|+||||++..+..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 47999999999999999988876
No 414
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=94.24 E-value=0.49 Score=44.84 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=31.6
Q ss_pred HHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCCCCCCcEEEEEecchhhhh
Q 010117 265 ILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPDNQNGSRVLITLLWFELQK 316 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~~~gskIivTTR~~~va~ 316 (518)
.+...+-.+.-+|+||+-.. |......+...+..-..+..||++|.+...+.
T Consensus 160 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 213 (226)
T cd03248 160 AIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVE 213 (226)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 45555666777999999876 44444444444432112356888888766554
No 415
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.24 E-value=0.12 Score=53.74 Aligned_cols=93 Identities=8% Similarity=0.156 Sum_probs=58.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCC-HHHHHHHHHhhcCCCCCC---CccccCC-----HHH
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYD-FGKILDDIINPVMPPSRV---SVIIGED-----YQL 261 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~~l~~~~~~---~~~~~~~-----~~~ 261 (518)
+.++|.|..|+|||+|+.++.++.. +.+-+.++++-+++... +.+++.++...-...... ...+... ...
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~ 217 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGH 217 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHH
Confidence 5799999999999999999877522 23346788888877754 556666665431111100 0001111 112
Q ss_pred HHHHHHHHhc---cCcEEEEEcCCCC
Q 010117 262 KKSILQDYLT---AKKYFIVLDDVFD 284 (518)
Q Consensus 262 ~~~~l~~~L~---~kr~LlVLDdvw~ 284 (518)
..-.+.++++ |++.||++||+-.
T Consensus 218 ~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 218 TALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHhcCCceEEEecChHH
Confidence 2344667764 5899999999855
No 416
>PRK13947 shikimate kinase; Provisional
Probab=94.22 E-value=0.034 Score=50.24 Aligned_cols=21 Identities=10% Similarity=0.097 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 010117 192 VVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~ 212 (518)
-|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999988
No 417
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.22 E-value=0.055 Score=49.03 Aligned_cols=40 Identities=15% Similarity=-0.091 Sum_probs=28.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcc-cccceEEEEEcCCC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVK-FYFDCHAWVRVSIA 231 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~-~~F~~~~wv~vs~~ 231 (518)
..++-+.|+.|+|||.||+.+.. .+. +.....+-+..+.-
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEY 43 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGH
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcc
Confidence 56888999999999999999887 333 33334455555443
No 418
>PHA02774 E1; Provisional
Probab=94.21 E-value=0.25 Score=52.79 Aligned_cols=38 Identities=18% Similarity=0.229 Sum_probs=28.8
Q ss_pred hhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 174 RGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 174 ~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.-...+..+|. +.++..-+.|+|++|.|||.+|..+.+
T Consensus 419 ~fl~~lk~~l~-~~PKknciv~~GPP~TGKS~fa~sL~~ 456 (613)
T PHA02774 419 SFLTALKDFLK-GIPKKNCLVIYGPPDTGKSMFCMSLIK 456 (613)
T ss_pred HHHHHHHHHHh-cCCcccEEEEECCCCCCHHHHHHHHHH
Confidence 34455555553 434556899999999999999999988
No 419
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=94.21 E-value=0.12 Score=54.02 Aligned_cols=94 Identities=15% Similarity=0.193 Sum_probs=56.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcccccc--eEEEEEcCCCC-CHHHHHHHHHhhcCCCCCC---CccccCCH-----
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKFYFD--CHAWVRVSIAY-DFGKILDDIINPVMPPSRV---SVIIGEDY----- 259 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~--~~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~---~~~~~~~~----- 259 (518)
+.++|.|-.|+|||||+..+.+.....+.+. .++.+-+++.. ++.+++..+...-...... ...+....
T Consensus 142 QR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a 221 (458)
T TIGR01041 142 QKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVT 221 (458)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHH
Confidence 5789999999999999999988544332121 46677776664 4566666665432211110 00011111
Q ss_pred HHHHHHHHHHhc---cCcEEEEEcCCCC
Q 010117 260 QLKKSILQDYLT---AKKYFIVLDDVFD 284 (518)
Q Consensus 260 ~~~~~~l~~~L~---~kr~LlVLDdvw~ 284 (518)
......+.++++ |++.||++||+-.
T Consensus 222 ~~~a~tiAEyfr~d~G~~VLli~DslTR 249 (458)
T TIGR01041 222 PRMALTAAEYLAFEKDMHVLVILTDMTN 249 (458)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcChhH
Confidence 112334667775 6899999999854
No 420
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.20 E-value=0.13 Score=50.38 Aligned_cols=81 Identities=9% Similarity=0.148 Sum_probs=50.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcc--cccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVK--FYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQ 267 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~--~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 267 (518)
-++|-+.|++|.|||+|.+.+++.-.++ ..+....-+.++. ..++.+.... .......+-+++.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsE----------SgKlV~kmF~kI~ 242 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSE----------SGKLVAKMFQKIQ 242 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhh----------hhhHHHHHHHHHH
Confidence 4789999999999999999999875443 3344444444432 2333333321 2234455667777
Q ss_pred HHhccCc--EEEEEcCCCC
Q 010117 268 DYLTAKK--YFIVLDDVFD 284 (518)
Q Consensus 268 ~~L~~kr--~LlVLDdvw~ 284 (518)
+.++++. +++.+|.|..
T Consensus 243 ELv~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 243 ELVEDRGNLVFVLIDEVES 261 (423)
T ss_pred HHHhCCCcEEEEEeHHHHH
Confidence 7776654 4566788754
No 421
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=94.20 E-value=0.34 Score=53.13 Aligned_cols=23 Identities=17% Similarity=0.104 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
-..++|+|..|.|||||++.+..
T Consensus 361 G~~v~IvG~sGsGKSTLl~lL~g 383 (588)
T PRK13657 361 GQTVAIVGPTGAGKSTLINLLQR 383 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36799999999999999999875
No 422
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=94.20 E-value=0.42 Score=51.16 Aligned_cols=23 Identities=17% Similarity=0.161 Sum_probs=20.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.+++|+|..|.|||||.+.+...
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G~ 52 (490)
T PRK10938 30 DSWAFVGANGSGKSALARALAGE 52 (490)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999998753
No 423
>PRK06217 hypothetical protein; Validated
Probab=94.19 E-value=0.034 Score=51.01 Aligned_cols=24 Identities=21% Similarity=0.138 Sum_probs=21.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNN 214 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~ 214 (518)
..|.|.|.+|+||||+|+.+....
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999843
No 424
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.18 E-value=0.052 Score=46.24 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=19.1
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCcccccc
Q 010117 193 VAILDSSGFEMTAFAADAFNNNHVKFYFD 221 (518)
Q Consensus 193 i~I~G~gGvGKTtLA~~v~~d~~~~~~F~ 221 (518)
|-|.|..|+||||+|+.+.. .+...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 57899999999999999998 6777775
No 425
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=94.17 E-value=0.17 Score=52.79 Aligned_cols=91 Identities=9% Similarity=0.091 Sum_probs=51.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCC-CHHHHHHHHHhhcCCCCCC---CccccCCHH-----
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAY-DFGKILDDIINPVMPPSRV---SVIIGEDYQ----- 260 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~---~~~~~~~~~----- 260 (518)
-..++|+|..|+|||||++.+.+... .+.++...+.... +..++...+...-...... ...+.....
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~~~----~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~ 243 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRFTE----ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAA 243 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC----CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHH
Confidence 35799999999999999999987321 2343444444443 4555555555442221110 000111111
Q ss_pred HHHHHHHHHh--ccCcEEEEEcCCCC
Q 010117 261 LKKSILQDYL--TAKKYFIVLDDVFD 284 (518)
Q Consensus 261 ~~~~~l~~~L--~~kr~LlVLDdvw~ 284 (518)
.....+.+++ +|++.||++||+-.
T Consensus 244 ~~a~aiAEyfrd~G~~VLl~~DslTR 269 (451)
T PRK05688 244 MYCTRIAEYFRDKGKNVLLLMDSLTR 269 (451)
T ss_pred HHHHHHHHHHHHCCCCEEEEecchhH
Confidence 1223355555 57999999999865
No 426
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=94.14 E-value=0.52 Score=47.00 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+++|+|..|.|||||++.+.-
T Consensus 34 e~v~iiG~nGsGKSTLl~~L~G 55 (305)
T PRK13651 34 EFIAIIGQTGSGKTTFIEHLNA 55 (305)
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999874
No 427
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.14 E-value=0.051 Score=48.21 Aligned_cols=34 Identities=15% Similarity=-0.141 Sum_probs=25.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEE
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWV 226 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv 226 (518)
.||-|.|..|.||||||+.+.. +....-..+..+
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~L 36 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALER--RLFARGIKVYLL 36 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEe
Confidence 5889999999999999999998 554443444554
No 428
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.11 E-value=0.034 Score=48.63 Aligned_cols=21 Identities=19% Similarity=0.150 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 010117 192 VVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~ 212 (518)
+|.|+|..|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999887
No 429
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.11 E-value=0.038 Score=51.57 Aligned_cols=24 Identities=8% Similarity=0.134 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
-.+|+|+|+.|+|||||++.+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999999884
No 430
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.10 E-value=0.25 Score=49.43 Aligned_cols=91 Identities=9% Similarity=0.136 Sum_probs=51.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCC-CCCHHHHHHHHHhhcCCCCCC---CccccCCH-----H
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSI-AYDFGKILDDIINPVMPPSRV---SVIIGEDY-----Q 260 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~~~---~~~~~~~~-----~ 260 (518)
-..++|+|..|+|||||.+.+.+... . +..+...+.. .-++.++....+..-+..... ...+.... .
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~--~--~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT--A--DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC--C--CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 35789999999999999999987432 1 2334444443 335566665555432211110 00011111 1
Q ss_pred HHHHHHHHHh--ccCcEEEEEcCCCC
Q 010117 261 LKKSILQDYL--TAKKYFIVLDDVFD 284 (518)
Q Consensus 261 ~~~~~l~~~L--~~kr~LlVLDdvw~ 284 (518)
...-.+.+++ +||..||++||+-.
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccchH
Confidence 1223344444 57999999999855
No 431
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.10 E-value=0.22 Score=46.93 Aligned_cols=79 Identities=16% Similarity=0.140 Sum_probs=51.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDY 269 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 269 (518)
-.-|-++|..|.||+.|++++.+ ++....-. -|.|++. +... ...|-+.
T Consensus 85 ANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k~--------------------------dl~~-Lp~l~~~ 133 (287)
T COG2607 85 ANNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDKE--------------------------DLAT-LPDLVEL 133 (287)
T ss_pred ccceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcHH--------------------------HHhh-HHHHHHH
Confidence 34578999999999999999998 44443322 2333222 1111 1223333
Q ss_pred hc--cCcEEEEEcCCCC--ChHHHHHHhhhcCCC
Q 010117 270 LT--AKKYFIVLDDVFD--DSEIWHDLVEFLPDN 299 (518)
Q Consensus 270 L~--~kr~LlVLDdvw~--~~~~~~~l~~~l~~~ 299 (518)
|+ .+||.|..||..- +...+..++..+..+
T Consensus 134 Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ 167 (287)
T COG2607 134 LRARPEKFILFCDDLSFEEGDDAYKALKSALEGG 167 (287)
T ss_pred HhcCCceEEEEecCCCCCCCchHHHHHHHHhcCC
Confidence 33 4799999999965 367788888888643
No 432
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.09 E-value=0.076 Score=50.76 Aligned_cols=64 Identities=17% Similarity=0.107 Sum_probs=37.5
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHH
Q 010117 175 GREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKIL 238 (518)
Q Consensus 175 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~ 238 (518)
...++++.+.....+..+|+|.|++|+||+||.-.+....+-+.+==.++=|.-|.+++--.++
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccc
Confidence 4556677776655567899999999999999998877632212211224445556666644444
No 433
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.08 E-value=0.061 Score=52.35 Aligned_cols=45 Identities=27% Similarity=0.148 Sum_probs=37.0
Q ss_pred CCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCC
Q 010117 186 GPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAY 232 (518)
Q Consensus 186 ~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~ 232 (518)
+=+.-+++.|+|.+|+|||+++.+... +.......++||+....+
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~~ 63 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEESP 63 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCCH
Confidence 334568999999999999999999887 555558889999988764
No 434
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.07 E-value=0.056 Score=48.92 Aligned_cols=24 Identities=8% Similarity=0.285 Sum_probs=21.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNN 214 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~ 214 (518)
..+.|.|+.|+||+||++.++.+.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 578999999999999999999854
No 435
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.07 E-value=0.047 Score=50.80 Aligned_cols=25 Identities=16% Similarity=0.001 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHc
Q 010117 188 PRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 188 ~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
++..+|.|+|+.|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999987
No 436
>PRK15453 phosphoribulokinase; Provisional
Probab=94.06 E-value=0.26 Score=48.08 Aligned_cols=82 Identities=12% Similarity=0.015 Sum_probs=44.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCcccccc-eEEEEEcCCC--CCHHHHHHHHH--hhcCCCCCCCccccCCHHHHH
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVKFYFD-CHAWVRVSIA--YDFGKILDDII--NPVMPPSRVSVIIGEDYQLKK 263 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~-~~~wv~vs~~--~~~~~i~~~i~--~~l~~~~~~~~~~~~~~~~~~ 263 (518)
+..+|+|.|..|+||||+|+.+.+ .... .. ..+.++-..- ++-..+-..+. +.-+.....-.++..+.+.+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~--if~~-~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~ 80 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK--IFRR-ENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELE 80 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HHhh-cCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHH
Confidence 467999999999999999998875 2211 11 1233333221 23222222221 111211110114667888888
Q ss_pred HHHHHHhccC
Q 010117 264 SILQDYLTAK 273 (518)
Q Consensus 264 ~~l~~~L~~k 273 (518)
+.++.+.+++
T Consensus 81 ~~l~~l~~~~ 90 (290)
T PRK15453 81 QLFREYGETG 90 (290)
T ss_pred HHHHHHhcCC
Confidence 8888877643
No 437
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.05 E-value=0.04 Score=50.11 Aligned_cols=23 Identities=9% Similarity=0.055 Sum_probs=20.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999873
No 438
>PRK04328 hypothetical protein; Provisional
Probab=94.03 E-value=0.23 Score=48.01 Aligned_cols=122 Identities=16% Similarity=0.127 Sum_probs=66.4
Q ss_pred HHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCC-----------
Q 010117 182 LLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSR----------- 250 (518)
Q Consensus 182 ~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~----------- 250 (518)
+|..+=..-+++.|.|.+|.|||+||.++... ..+ .-...+|++...++ .++.+ .+++++....
T Consensus 15 lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~-~~~-~ge~~lyis~ee~~--~~i~~-~~~~~g~d~~~~~~~~~l~ii 89 (249)
T PRK04328 15 ILYGGIPERNVVLLSGGPGTGKSIFSQQFLWN-GLQ-MGEPGVYVALEEHP--VQVRR-NMRQFGWDVRKYEEEGKFAIV 89 (249)
T ss_pred HhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHH-HHh-cCCcEEEEEeeCCH--HHHHH-HHHHcCCCHHHHhhcCCEEEE
Confidence 34343334689999999999999999886553 222 23457888776643 33333 2333332100
Q ss_pred ------------CCc---cccCCHHHHHHHHHHHhcc-CcEEEEEcCCCC----ChH----HHHHHhhhcCCCCCCcEEE
Q 010117 251 ------------VSV---IIGEDYQLKKSILQDYLTA-KKYFIVLDDVFD----DSE----IWHDLVEFLPDNQNGSRVL 306 (518)
Q Consensus 251 ------------~~~---~~~~~~~~~~~~l~~~L~~-kr~LlVLDdvw~----~~~----~~~~l~~~l~~~~~gskIi 306 (518)
... ....+...+...+.+.++. +.-++|+|.+-. +.. ....+...+ ...|+.++
T Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~l~~~~~~~~r~~~~~l~~~l--k~~g~t~l 167 (249)
T PRK04328 90 DAFTGGIGSAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVSTLYLTKPAMARSIVMQLKRVL--SGLGCTAI 167 (249)
T ss_pred eccccccccccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChhHhhcCChHHHHHHHHHHHHHH--HhCCCEEE
Confidence 000 0123455666667766654 445799999843 111 112222222 23477778
Q ss_pred EEec
Q 010117 307 ITLL 310 (518)
Q Consensus 307 vTTR 310 (518)
+|+.
T Consensus 168 lt~e 171 (249)
T PRK04328 168 FVSQ 171 (249)
T ss_pred EEEC
Confidence 8764
No 439
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=94.03 E-value=0.26 Score=46.44 Aligned_cols=46 Identities=24% Similarity=0.301 Sum_probs=31.0
Q ss_pred CcEEEEEcCCCC--ChHHHHHHhhhcCCCCCCcEEEEEecchhhhhhc
Q 010117 273 KKYFIVLDDVFD--DSEIWHDLVEFLPDNQNGSRVLITLLWFELQKGE 318 (518)
Q Consensus 273 kr~LlVLDdvw~--~~~~~~~l~~~l~~~~~gskIivTTR~~~va~~~ 318 (518)
..-++|||||.. |......+...+....+.+.+||||..+.+...+
T Consensus 158 ~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a 205 (220)
T PF02463_consen 158 PSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDA 205 (220)
T ss_dssp --SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 345899999987 5666666666666555578999999998887755
No 440
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=94.00 E-value=0.52 Score=49.02 Aligned_cols=126 Identities=11% Similarity=0.067 Sum_probs=70.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC--CccccC-C-----HHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRV--SVIIGE-D-----YQL 261 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~--~~~~~~-~-----~~~ 261 (518)
-..++|+|..|+|||||.+.+...... ...++...-.+...+.+++...+..-+..... ....+. . ...
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~ 232 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNAKA---DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAK 232 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCCC---CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHH
Confidence 357899999999999999999874322 11233322223366777766665543221110 000111 1 112
Q ss_pred HHHHHHHHh--ccCcEEEEEcCCCCChHHHHHHhhh---cCCCCCCcEEEEEecchhhhhhccC
Q 010117 262 KKSILQDYL--TAKKYFIVLDDVFDDSEIWHDLVEF---LPDNQNGSRVLITLLWFELQKGEKI 320 (518)
Q Consensus 262 ~~~~l~~~L--~~kr~LlVLDdvw~~~~~~~~l~~~---l~~~~~gskIivTTR~~~va~~~~~ 320 (518)
....+.+++ ++|..||++||+-.-......+... .|.. |--..+.|...++++..+.
T Consensus 233 ~a~~iAEyfr~~G~~VLlilDslTr~a~A~reisl~~~e~p~~--G~~~~~~s~l~~L~ERag~ 294 (432)
T PRK06793 233 LATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELPIG--GKTLLMESYMKKLLERSGK 294 (432)
T ss_pred HHHHHHHHHHHcCCcEEEEecchHHHHHHHHHHHHHhcCCCCC--CeeeeeeccchhHHHHhcc
Confidence 233344454 4789999999986622333333333 2322 6666777777777777643
No 441
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=94.00 E-value=0.39 Score=52.58 Aligned_cols=54 Identities=11% Similarity=0.120 Sum_probs=32.2
Q ss_pred HHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCCCCCCcEEEEEecchhhhhhc
Q 010117 265 ILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPDNQNGSRVLITLLWFELQKGE 318 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~~~gskIivTTR~~~va~~~ 318 (518)
.+.+.|-.++=+++||+.-+ |...-..+...+.....+..||++|...+....+
T Consensus 481 ~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~ 536 (585)
T TIGR01192 481 AIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNA 536 (585)
T ss_pred HHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcC
Confidence 45566666777899999876 5555555554444222355566666655544434
No 442
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.00 E-value=0.098 Score=55.58 Aligned_cols=104 Identities=13% Similarity=0.072 Sum_probs=54.7
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCccc-ccceEE-EEEcCCCCC-HHHHHHHHHhhcCCCCCCCcc
Q 010117 178 ELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKF-YFDCHA-WVRVSIAYD-FGKILDDIINPVMPPSRVSVI 254 (518)
Q Consensus 178 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~-~F~~~~-wv~vs~~~~-~~~i~~~i~~~l~~~~~~~~~ 254 (518)
+++++|..- ..=....|+|..|+|||||++.+.+ .+.. +=++.+ .+-|.+.+. +.++.+.+-..+-.......+
T Consensus 405 RvIDll~PI-GkGQR~LIvgpp~aGKTtLL~~IAn--~i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~ 481 (672)
T PRK12678 405 RVIDLIMPI-GKGQRGLIVSPPKAGKTTILQNIAN--AITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPP 481 (672)
T ss_pred eeeeeeccc-ccCCEeEEeCCCCCCHHHHHHHHHH--HHhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCH
Confidence 455555432 1235789999999999999999998 3322 223333 444555543 333333331111111110000
Q ss_pred -ccCCHHHHHHHHHHHh--ccCcEEEEEcCCCC
Q 010117 255 -IGEDYQLKKSILQDYL--TAKKYFIVLDDVFD 284 (518)
Q Consensus 255 -~~~~~~~~~~~l~~~L--~~kr~LlVLDdvw~ 284 (518)
.......+.-.+.+++ .|+.+||++|++-.
T Consensus 482 ~~~~~~a~~ai~~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 482 SDHTTVAELAIERAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchH
Confidence 1111222333445555 67999999999854
No 443
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=93.99 E-value=0.32 Score=44.46 Aligned_cols=24 Identities=21% Similarity=0.087 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
...+|.|.|..|.||||+|+.+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~ 40 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEK 40 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999887
No 444
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=93.97 E-value=0.066 Score=57.00 Aligned_cols=41 Identities=12% Similarity=0.157 Sum_probs=34.7
Q ss_pred hhhhHHHHHHHHhc----CCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIE----GPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~----~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.++.+++|++.|.. -+..-+++.++|+.|+||||||+.+.+
T Consensus 81 lee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 81 MEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 88889999988833 244568999999999999999999987
No 445
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=93.96 E-value=0.68 Score=47.14 Aligned_cols=54 Identities=15% Similarity=0.102 Sum_probs=34.1
Q ss_pred HHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC--CCCCcEEEEEecchhhhhh
Q 010117 264 SILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD--NQNGSRVLITLLWFELQKG 317 (518)
Q Consensus 264 ~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~--~~~gskIivTTR~~~va~~ 317 (518)
-.|.+.|..+.=+|+||.--. |...-..+...+.. ...|..+|++|.+..-+..
T Consensus 145 VaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~ 202 (351)
T PRK11432 145 VALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFA 202 (351)
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH
Confidence 346777777788999999766 44444444444331 1236678888888765543
No 446
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.93 E-value=0.05 Score=45.59 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=20.0
Q ss_pred EEEEcCCCccHHHHHHHHHcCCC
Q 010117 193 VAILDSSGFEMTAFAADAFNNNH 215 (518)
Q Consensus 193 i~I~G~gGvGKTtLA~~v~~d~~ 215 (518)
|.|+|..|+|||||.+.+.+...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999987643
No 447
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.92 E-value=0.16 Score=46.64 Aligned_cols=42 Identities=12% Similarity=0.029 Sum_probs=27.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCccccc--------ceEEEEEcCCCC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKFYF--------DCHAWVRVSIAY 232 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F--------~~~~wv~vs~~~ 232 (518)
.++.|.|.+|+||||++..+.........| ..++|++.-.+.
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 488999999999999998877642222222 247777766653
No 448
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.91 E-value=0.046 Score=50.24 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=20.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.++.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999774
No 449
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.91 E-value=0.095 Score=48.28 Aligned_cols=22 Identities=9% Similarity=0.009 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 010117 192 VVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~d 213 (518)
+|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~ 23 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAER 23 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 450
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=93.89 E-value=0.19 Score=50.61 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=20.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.-|.|+|..|+||+++|+.++..
T Consensus 30 ~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 30 KPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CCEEEECCCCCcHHHHHHHHHHh
Confidence 46889999999999999999863
No 451
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.87 E-value=0.17 Score=49.40 Aligned_cols=123 Identities=18% Similarity=0.085 Sum_probs=64.6
Q ss_pred hhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCC
Q 010117 173 ERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVS 252 (518)
Q Consensus 173 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~ 252 (518)
+...+.+.+++... -.+|.|.|..|.||||++..+.+ .+...-..++.+.-+..+.... ..++....
T Consensus 66 ~~~~~~l~~~~~~~---~GlilisG~tGSGKTT~l~all~--~i~~~~~~iitiEdp~E~~~~~-----~~q~~v~~--- 132 (264)
T cd01129 66 PENLEIFRKLLEKP---HGIILVTGPTGSGKTTTLYSALS--ELNTPEKNIITVEDPVEYQIPG-----INQVQVNE--- 132 (264)
T ss_pred HHHHHHHHHHHhcC---CCEEEEECCCCCcHHHHHHHHHh--hhCCCCCeEEEECCCceecCCC-----ceEEEeCC---
Confidence 34444454454433 35899999999999999998766 2322111122221111111110 01111111
Q ss_pred ccccCCHHHHHHHHHHHhccCcEEEEEcCCCCChHHHHHHhhhcCCCCCCcEEEEEecchhhhh
Q 010117 253 VIIGEDYQLKKSILQDYLTAKKYFIVLDDVFDDSEIWHDLVEFLPDNQNGSRVLITLLWFELQK 316 (518)
Q Consensus 253 ~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~va~ 316 (518)
.........++..|+...=.|+++++.+ .+....+..+.. .|-.++-|....++..
T Consensus 133 ----~~~~~~~~~l~~~lR~~PD~i~vgEiR~-~e~a~~~~~aa~---tGh~v~tTlHa~~~~~ 188 (264)
T cd01129 133 ----KAGLTFARGLRAILRQDPDIIMVGEIRD-AETAEIAVQAAL---TGHLVLSTLHTNDAPG 188 (264)
T ss_pred ----cCCcCHHHHHHHHhccCCCEEEeccCCC-HHHHHHHHHHHH---cCCcEEEEeccCCHHH
Confidence 0112355667777877788899999999 665443333322 2434555555555444
No 452
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.87 E-value=0.034 Score=46.10 Aligned_cols=20 Identities=15% Similarity=0.267 Sum_probs=18.0
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q 010117 193 VAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 193 i~I~G~gGvGKTtLA~~v~~ 212 (518)
|-|+|.+|+|||+||+.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAK 20 (107)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999887
No 453
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.87 E-value=0.05 Score=48.48 Aligned_cols=33 Identities=12% Similarity=0.098 Sum_probs=24.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCccc-ccceEEEE
Q 010117 192 VVAILDSSGFEMTAFAADAFNNNHVKF-YFDCHAWV 226 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~d~~~~~-~F~~~~wv 226 (518)
|++|+|+.|+|||||+..+.. ..+. .+...+.-
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~--~l~~~G~~V~viK 34 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVK--ALKARGYRVATIK 34 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEe
Confidence 589999999999999999988 3332 35544443
No 454
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=93.87 E-value=0.2 Score=52.36 Aligned_cols=93 Identities=10% Similarity=0.074 Sum_probs=48.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC---CccccCC-----HH
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRV---SVIIGED-----YQ 260 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~---~~~~~~~-----~~ 260 (518)
.-..++|+|..|+|||||++.+.+.... -..++++.--+.-++.++..+.+..-.....- ...+... ..
T Consensus 157 ~Gq~i~I~G~sG~GKStLl~~I~~~~~~---~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~~ 233 (438)
T PRK07721 157 KGQRVGIFAGSGVGKSTLMGMIARNTSA---DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKGA 233 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcccCC---CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHHH
Confidence 3468999999999999999988874222 11233332223334554443322211100000 0001111 11
Q ss_pred HHHHHHHHHh--ccCcEEEEEcCCCC
Q 010117 261 LKKSILQDYL--TAKKYFIVLDDVFD 284 (518)
Q Consensus 261 ~~~~~l~~~L--~~kr~LlVLDdvw~ 284 (518)
...-.+.+++ +|++.||++||+-.
T Consensus 234 ~~a~~iAEyfr~~g~~Vll~~Dsltr 259 (438)
T PRK07721 234 YTATAIAEYFRDQGLNVMLMMDSVTR 259 (438)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeChHH
Confidence 2233355555 57999999999853
No 455
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=93.86 E-value=0.24 Score=55.46 Aligned_cols=23 Identities=17% Similarity=0.091 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
=..++|+|..|.|||||++.+..
T Consensus 491 G~~iaIvG~sGsGKSTLlklL~g 513 (694)
T TIGR03375 491 GEKVAIIGRIGSGKSTLLKLLLG 513 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999875
No 456
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.84 E-value=0.33 Score=47.70 Aligned_cols=54 Identities=11% Similarity=0.168 Sum_probs=33.3
Q ss_pred HHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC--CCCCcEEEEEecchhhhhhc
Q 010117 265 ILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD--NQNGSRVLITLLWFELQKGE 318 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~--~~~gskIivTTR~~~va~~~ 318 (518)
.+...|..+.=+|+||+.-. |......+...+.. ...|..||++|.+...+..+
T Consensus 150 ~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~ 207 (277)
T PRK13642 150 AVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASS 207 (277)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhC
Confidence 45555666667999999866 45555555554431 12366788888776665433
No 457
>PRK05922 type III secretion system ATPase; Validated
Probab=93.82 E-value=0.25 Score=51.35 Aligned_cols=90 Identities=4% Similarity=0.120 Sum_probs=50.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCC-CCHHHHHHHHHhhcCCCCCC---CccccCCHH-----H
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIA-YDFGKILDDIINPVMPPSRV---SVIIGEDYQ-----L 261 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~~~~~---~~~~~~~~~-----~ 261 (518)
..++|+|..|+|||||.+.+.+... .+..+.+.++.. ..+.+.+.+........... ...+..... .
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~ 233 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGR 233 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHH
Confidence 5699999999999999999987421 233333333332 23445555554333222110 000111111 1
Q ss_pred HHHHHHHHh--ccCcEEEEEcCCCC
Q 010117 262 KKSILQDYL--TAKKYFIVLDDVFD 284 (518)
Q Consensus 262 ~~~~l~~~L--~~kr~LlVLDdvw~ 284 (518)
..-.+.+++ +|++.||++||+-.
T Consensus 234 ~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 234 AAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhH
Confidence 223355555 47999999999855
No 458
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=93.82 E-value=0.56 Score=47.55 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=21.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.+++|+|+.|.|||||.+.+..-
T Consensus 68 ei~gLlGpNGaGKSTLl~~L~Gl 90 (340)
T PRK13536 68 ECFGLLGPNGAGKSTIARMILGM 90 (340)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 69999999999999999999763
No 459
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.82 E-value=0.045 Score=48.83 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=18.5
Q ss_pred EEEEEcCCCccHHHHHHHHH
Q 010117 192 VVAILDSSGFEMTAFAADAF 211 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~ 211 (518)
.|+|.|.+|+||||++..+-
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999886
No 460
>PRK13975 thymidylate kinase; Provisional
Probab=93.81 E-value=0.05 Score=50.34 Aligned_cols=23 Identities=13% Similarity=-0.016 Sum_probs=21.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.+|.|.|+.|+||||+|+.+...
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~ 25 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEK 25 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999983
No 461
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.81 E-value=0.18 Score=51.61 Aligned_cols=100 Identities=13% Similarity=0.036 Sum_probs=55.9
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCC-ccc
Q 010117 177 EELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVS-VII 255 (518)
Q Consensus 177 ~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~-~~~ 255 (518)
..+-+.|..+=..-.++.|.|.+|+|||||+.++... ....-..++|++.... ...+. .-+..++.....- ...
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~ 143 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLA 143 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEc
Confidence 3344444444334579999999999999999988763 2222245677765433 33332 2234454332210 012
Q ss_pred cCCHHHHHHHHHHHhccCcEEEEEcCCCC
Q 010117 256 GEDYQLKKSILQDYLTAKKYFIVLDDVFD 284 (518)
Q Consensus 256 ~~~~~~~~~~l~~~L~~kr~LlVLDdvw~ 284 (518)
..+.+.+.+.+. ..+.-+||+|.+..
T Consensus 144 e~~le~I~~~i~---~~~~~lVVIDSIq~ 169 (372)
T cd01121 144 ETNLEDILASIE---ELKPDLVIIDSIQT 169 (372)
T ss_pred cCcHHHHHHHHH---hcCCcEEEEcchHH
Confidence 334455444443 23666899999853
No 462
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=93.79 E-value=0.72 Score=49.85 Aligned_cols=24 Identities=17% Similarity=0.081 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
-..++|+|..|.|||||++.+..-
T Consensus 348 G~~~~ivG~sGsGKSTL~~ll~g~ 371 (529)
T TIGR02857 348 GERVALVGPSGAGKSTLLNLLLGF 371 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999998653
No 463
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=93.78 E-value=0.74 Score=47.69 Aligned_cols=54 Identities=13% Similarity=0.167 Sum_probs=33.1
Q ss_pred HHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC--CCCCcEEEEEecchhhhhh
Q 010117 264 SILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD--NQNGSRVLITLLWFELQKG 317 (518)
Q Consensus 264 ~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~--~~~gskIivTTR~~~va~~ 317 (518)
-.|...|..+.=+|+||.--. |...-..+...+.. ...|..||++|.+...+..
T Consensus 173 v~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~ 230 (400)
T PRK10070 173 VGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMR 230 (400)
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHH
Confidence 345566667778999999876 44444444443331 1236678888888765543
No 464
>PRK13949 shikimate kinase; Provisional
Probab=93.78 E-value=0.048 Score=49.33 Aligned_cols=22 Identities=9% Similarity=0.076 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 010117 192 VVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~d 213 (518)
-|.|+|+.|+||||+++.+.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999883
No 465
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.77 E-value=0.46 Score=53.54 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.+-|.++|++|+|||+||+.+.+.
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e 510 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATE 510 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 455888999999999999999983
No 466
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.76 E-value=0.098 Score=49.66 Aligned_cols=91 Identities=16% Similarity=0.113 Sum_probs=55.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC-----------Cccc--
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRV-----------SVII-- 255 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-----------~~~~-- 255 (518)
.-+++.|.|.+|+|||+|+.++... ..+..=..+++|+...++ .++.+.+- +++..... ..+.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~-~~~~~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYN-GLKNFGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH-HHHHHT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH-hhhhcCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEecccccc
Confidence 4579999999999999999886542 222212346788775543 44444433 33321110 0001
Q ss_pred ---cCCHHHHHHHHHHHhcc-CcEEEEEcCCC
Q 010117 256 ---GEDYQLKKSILQDYLTA-KKYFIVLDDVF 283 (518)
Q Consensus 256 ---~~~~~~~~~~l~~~L~~-kr~LlVLDdvw 283 (518)
..+.+.+...+.+.++. +...+|+|.+-
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 45778888888888765 55789999863
No 467
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.74 E-value=0.64 Score=45.10 Aligned_cols=52 Identities=12% Similarity=0.099 Sum_probs=33.1
Q ss_pred HHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCCCCCCcEEEEEecchhhhh
Q 010117 265 ILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPDNQNGSRVLITLLWFELQK 316 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~~~gskIivTTR~~~va~ 316 (518)
.|...+-.+.-+++||+--. |......+...+..-..++.||++|.+...+.
T Consensus 163 ~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~ 216 (257)
T PRK14246 163 TIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVA 216 (257)
T ss_pred HHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHH
Confidence 45555556667999999766 45555555554442223577899998877653
No 468
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.74 E-value=0.74 Score=46.45 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=21.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.+++|+|..|.|||||.+.++..
T Consensus 109 e~v~IvG~~GsGKSTLl~~L~g~ 131 (329)
T PRK14257 109 KVTAFIGPSGCGKSTFLRNLNQL 131 (329)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999999864
No 469
>PRK13409 putative ATPase RIL; Provisional
Probab=93.69 E-value=0.41 Score=52.34 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=20.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.+++|+|..|+|||||.+.+..-
T Consensus 100 ev~gLvG~NGaGKSTLlkiL~G~ 122 (590)
T PRK13409 100 KVTGILGPNGIGKTTAVKILSGE 122 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 69999999999999999998763
No 470
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=93.67 E-value=0.91 Score=43.99 Aligned_cols=55 Identities=11% Similarity=0.032 Sum_probs=33.1
Q ss_pred HHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCCCCCCcEEEEEecchhhhhhc
Q 010117 264 SILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPDNQNGSRVLITLLWFELQKGE 318 (518)
Q Consensus 264 ~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~~~gskIivTTR~~~va~~~ 318 (518)
-.+...+..+.=+|+||+--. |...-+.+...+.....+..||++|.+...+..+
T Consensus 165 l~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~ 221 (257)
T cd03288 165 FCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDA 221 (257)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhC
Confidence 345566666777999999765 3433333433333222367788888887665543
No 471
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=93.66 E-value=0.36 Score=48.29 Aligned_cols=132 Identities=11% Similarity=0.039 Sum_probs=63.9
Q ss_pred hhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccc-----eEEEEEcCCCCCHHHHHHHHHhhcCC
Q 010117 173 ERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFD-----CHAWVRVSIAYDFGKILDDIINPVMP 247 (518)
Q Consensus 173 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~-----~~~wv~vs~~~~~~~i~~~i~~~l~~ 247 (518)
+...+.+...+..+. -...+-+.|+.|+||+++|..+.+.---..... ++-|+..+..+|..-+. ...
T Consensus 10 ~~~~~~l~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~------~~p 82 (319)
T PRK08769 10 QRAYDQTVAALDAGR-LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVS------FIP 82 (319)
T ss_pred HHHHHHHHHHHHcCC-cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEe------cCC
Confidence 344556666665542 334688999999999999987765211110000 00011111111110000 000
Q ss_pred CCCC-CccccCCHHHHHHHHHHHh-----ccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEEecch
Q 010117 248 PSRV-SVIIGEDYQLKKSILQDYL-----TAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLITLLWF 312 (518)
Q Consensus 248 ~~~~-~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~ 312 (518)
.... ........+++.+ +.+.+ .+++=++|+|++.. ....-+.+...+..-..++.+|++|.+.
T Consensus 83 ~~~~~k~~~~I~idqIR~-l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~ 153 (319)
T PRK08769 83 NRTGDKLRTEIVIEQVRE-ISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQP 153 (319)
T ss_pred CcccccccccccHHHHHH-HHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECCh
Confidence 0000 0000112333222 22222 24566899999987 5666677777666555577777776653
No 472
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=93.66 E-value=0.62 Score=51.76 Aligned_cols=52 Identities=13% Similarity=0.115 Sum_probs=32.5
Q ss_pred HHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCCCCCCcEEEEEecchhhhhhc
Q 010117 265 ILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPDNQNGSRVLITLLWFELQKGE 318 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~~~gskIivTTR~~~va~~~ 318 (518)
.+.+.+-.+.=+++||+--+ |...-+.+...+... |..||++|.+.+....+
T Consensus 592 ~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~~~~~~~ 645 (659)
T TIGR00954 592 AMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRKSLWKYH 645 (659)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCchHHHHhC
Confidence 45555666777999999876 455555555555432 55677777766655443
No 473
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.64 E-value=0.1 Score=48.99 Aligned_cols=42 Identities=17% Similarity=0.114 Sum_probs=26.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCcccc-cceEEEEEcCCCCCHH
Q 010117 192 VVAILDSSGFEMTAFAADAFNNNHVKFY-FDCHAWVRVSIAYDFG 235 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~d~~~~~~-F~~~~wv~vs~~~~~~ 235 (518)
.|+|+|-||+||||+|..+... -...+ |+ +.=|....++++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~-l~~~~~~~-VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKR-LLSKGGYN-VLVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHH-HHhcCCce-EEEEeCCCCCChH
Confidence 6899999999999999884442 12222 33 3445555555543
No 474
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.63 E-value=0.22 Score=51.69 Aligned_cols=92 Identities=12% Similarity=0.160 Sum_probs=50.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCC-CHHHHHHHHHhhcCCCCCC---CccccCCHH----
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAY-DFGKILDDIINPVMPPSRV---SVIIGEDYQ---- 260 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~---~~~~~~~~~---- 260 (518)
.-..++|+|..|+|||||.+.+.+.... +..+..-+++.. ++.++..+.+.+-+..... ...+.....
T Consensus 136 ~Gqri~I~G~sG~GKTtLl~~i~~~~~~----~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~ 211 (413)
T TIGR03497 136 KGQRVGIFAGSGVGKSTLLGMIARNAKA----DINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKA 211 (413)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHH
Confidence 3468999999999999999988873221 222333344433 4455555544331111000 000111111
Q ss_pred -HHHHHHHHHh--ccCcEEEEEcCCCC
Q 010117 261 -LKKSILQDYL--TAKKYFIVLDDVFD 284 (518)
Q Consensus 261 -~~~~~l~~~L--~~kr~LlVLDdvw~ 284 (518)
.....+.+++ +|++.||++||+-.
T Consensus 212 ~~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (413)
T TIGR03497 212 AFTATAIAEYFRDQGKDVLLMMDSVTR 238 (413)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcCcHH
Confidence 1223455555 47899999999854
No 475
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=93.59 E-value=0.72 Score=51.81 Aligned_cols=24 Identities=21% Similarity=0.068 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
-..++|+|..|.|||||++.+..-
T Consensus 500 G~~vaIvG~SGsGKSTLlklL~gl 523 (708)
T TIGR01193 500 NSKTTIVGMSGSGKSTLAKLLVGF 523 (708)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 368999999999999999998653
No 476
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.59 E-value=0.064 Score=44.32 Aligned_cols=21 Identities=29% Similarity=0.271 Sum_probs=19.5
Q ss_pred eEEEEEcCCCccHHHHHHHHH
Q 010117 191 SVVAILDSSGFEMTAFAADAF 211 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~ 211 (518)
..++|+|+.|.|||||+..+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 689999999999999999976
No 477
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=93.58 E-value=0.39 Score=53.30 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
..|+|+|..|+|||||++.+..
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999999864
No 478
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=93.57 E-value=0.95 Score=46.15 Aligned_cols=127 Identities=14% Similarity=0.099 Sum_probs=66.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCccc---ccceEEE----------EEcCCCC------CH-----------------
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKF---YFDCHAW----------VRVSIAY------DF----------------- 234 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~---~F~~~~w----------v~vs~~~------~~----------------- 234 (518)
.+++|+|+.|.|||||.+.+.--..... .|+..-+ ..+.+.+ ++
T Consensus 31 e~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~ 110 (353)
T TIGR03265 31 EFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAE 110 (353)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHH
Confidence 5899999999999999999976422111 1111100 0011111 11
Q ss_pred -HHHHHHHHhhcCCCCC-CCccccCCHHH-HHHHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC--CCCCcEEEE
Q 010117 235 -GKILDDIINPVMPPSR-VSVIIGEDYQL-KKSILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD--NQNGSRVLI 307 (518)
Q Consensus 235 -~~i~~~i~~~l~~~~~-~~~~~~~~~~~-~~~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~--~~~gskIiv 307 (518)
..-..++++.++.... ...+...+..+ ..-.|...|..+.=+++||.--. |...-..+...+.. ...|..+|+
T Consensus 111 ~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~ 190 (353)
T TIGR03265 111 VAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIM 190 (353)
T ss_pred HHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 1223445555544321 01122233333 33456677777778999999766 44433444433331 123667888
Q ss_pred Eecchhhhhh
Q 010117 308 TLLWFELQKG 317 (518)
Q Consensus 308 TTR~~~va~~ 317 (518)
+|.+..-+..
T Consensus 191 vTHd~~ea~~ 200 (353)
T TIGR03265 191 VTHDQEEALS 200 (353)
T ss_pred EcCCHHHHHH
Confidence 8888765543
No 479
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.56 E-value=0.045 Score=49.04 Aligned_cols=21 Identities=10% Similarity=0.191 Sum_probs=18.7
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q 010117 193 VAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 193 i~I~G~gGvGKTtLA~~v~~d 213 (518)
|.|+|+.|+||||+|+.+.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999873
No 480
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=93.55 E-value=2.5 Score=44.64 Aligned_cols=134 Identities=13% Similarity=0.082 Sum_probs=71.5
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCC-----cccc----cc-----------eEEEEE--cC---CCC
Q 010117 178 ELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNH-----VKFY----FD-----------CHAWVR--VS---IAY 232 (518)
Q Consensus 178 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~-----~~~~----F~-----------~~~wv~--vs---~~~ 232 (518)
.|.+-|.-+-..-..|++||+.|+||+||.+.++-+.. +..+ |. ...|.. +- .+-
T Consensus 404 ~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~ 483 (614)
T KOG0927|consen 404 MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDE 483 (614)
T ss_pred hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhcccc
Confidence 45555554433346799999999999999999987521 1111 11 011110 00 001
Q ss_pred CHHHHHHHHHhhcCCCCCCCc--cccCCHHHHHH-HHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCCCCCCcEEEE
Q 010117 233 DFGKILDDIINPVMPPSRVSV--IIGEDYQLKKS-ILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPDNQNGSRVLI 307 (518)
Q Consensus 233 ~~~~i~~~i~~~l~~~~~~~~--~~~~~~~~~~~-~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~~~gskIiv 307 (518)
...+..+.|+...+....... ....+..+... .+....-...-|||||.--+ |.+..+.+..++..-. |. +|+
T Consensus 484 ~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~-Gg-vv~ 561 (614)
T KOG0927|consen 484 KELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFP-GG-VVL 561 (614)
T ss_pred chHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccC-Cc-eee
Confidence 344566777777766543110 01111112222 22333345688999999877 4555666666654332 44 666
Q ss_pred Eecchh
Q 010117 308 TLLWFE 313 (518)
Q Consensus 308 TTR~~~ 313 (518)
+|.+..
T Consensus 562 vSHDfr 567 (614)
T KOG0927|consen 562 VSHDFR 567 (614)
T ss_pred eechhh
Confidence 666643
No 481
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.54 E-value=0.22 Score=51.56 Aligned_cols=91 Identities=11% Similarity=0.142 Sum_probs=51.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCC-CHHHHHHHHHhhcCCCCCC---CccccCCH-----H
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAY-DFGKILDDIINPVMPPSRV---SVIIGEDY-----Q 260 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~---~~~~~~~~-----~ 260 (518)
-..++|+|..|+|||||.+.+.+... -+..+.+.+.... ++.++.......-...... ...+.... .
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~ 212 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAA 212 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHH
Confidence 35799999999999999998887322 1334445555543 3455555544331111100 00011111 1
Q ss_pred HHHHHHHHHh--ccCcEEEEEcCCCC
Q 010117 261 LKKSILQDYL--TAKKYFIVLDDVFD 284 (518)
Q Consensus 261 ~~~~~l~~~L--~~kr~LlVLDdvw~ 284 (518)
...-.+.+++ +|++.||++||+-.
T Consensus 213 ~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (411)
T TIGR03496 213 FYATAIAEYFRDQGKDVLLLMDSLTR 238 (411)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeChHH
Confidence 1223345555 57899999999854
No 482
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.54 E-value=0.22 Score=48.17 Aligned_cols=81 Identities=16% Similarity=0.034 Sum_probs=43.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCC--CCHHHHHHHHHhhcCCCCCCC--ccccCCHHHHHHHHH
Q 010117 192 VVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIA--YDFGKILDDIINPVMPPSRVS--VIIGEDYQLKKSILQ 267 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~--~~~~~i~~~i~~~l~~~~~~~--~~~~~~~~~~~~~l~ 267 (518)
+|+|.|..|+||||+++.+... .+..=.....++...- ++-...-..+.........-. .++..+.+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~--l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHI--FAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHH--HHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 5899999999999999987762 2111011233332221 122222222222211111111 146678888888888
Q ss_pred HHhccCc
Q 010117 268 DYLTAKK 274 (518)
Q Consensus 268 ~~L~~kr 274 (518)
.+.+++.
T Consensus 79 ~L~~g~~ 85 (277)
T cd02029 79 TYGETGR 85 (277)
T ss_pred HHHcCCC
Confidence 8887753
No 483
>PRK14530 adenylate kinase; Provisional
Probab=93.53 E-value=0.055 Score=51.05 Aligned_cols=22 Identities=9% Similarity=0.146 Sum_probs=20.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
+.|.|+|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999976
No 484
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.53 E-value=0.42 Score=43.93 Aligned_cols=21 Identities=14% Similarity=0.134 Sum_probs=19.2
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q 010117 193 VAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 193 i~I~G~gGvGKTtLA~~v~~d 213 (518)
|.|.|++|+||||+|+.+...
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999873
No 485
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=93.53 E-value=0.49 Score=53.16 Aligned_cols=150 Identities=11% Similarity=0.072 Sum_probs=87.5
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRV 251 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~ 251 (518)
..+.+.+|++.+... .|+.|+|..|.||||-.-+.+.+.-. .....+=++=.+......+...+.+.++.+...
T Consensus 51 v~~~~~~i~~ai~~~----~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~ 124 (845)
T COG1643 51 VTAVRDEILKAIEQN----QVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKLGE 124 (845)
T ss_pred cHHHHHHHHHHHHhC----CEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCc
Confidence 567788888888764 69999999999999966555442111 122233333333345667788888888775332
Q ss_pred ---------------CccccCCHHHHHHHHH-HHhccCcEEEEEcCCCCChHH-----HHHHhhhcCCCCCCcEEEEEec
Q 010117 252 ---------------SVIIGEDYQLKKSILQ-DYLTAKKYFIVLDDVFDDSEI-----WHDLVEFLPDNQNGSRVLITLL 310 (518)
Q Consensus 252 ---------------~~~~~~~~~~~~~~l~-~~L~~kr~LlVLDdvw~~~~~-----~~~l~~~l~~~~~gskIivTTR 310 (518)
....-.+...+...++ +.+-.+=-.||+|.+.+ ... ..-++..++.-...-||||+|=
T Consensus 125 ~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHE-RSl~tDilLgllk~~~~~rr~DLKiIimSA 203 (845)
T COG1643 125 TVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHE-RSLNTDILLGLLKDLLARRRDDLKLIIMSA 203 (845)
T ss_pred eeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhh-hhHHHHHHHHHHHHHHhhcCCCceEEEEec
Confidence 0112334444444444 33333344789999987 322 2222222332233479999976
Q ss_pred c---hhhhhhccCCCchhhhc
Q 010117 311 W---FELQKGEKIQPDSVLVG 328 (518)
Q Consensus 311 ~---~~va~~~~~~Pli~~vg 328 (518)
. +..+..++++|.+.+=|
T Consensus 204 Tld~~rfs~~f~~apvi~i~G 224 (845)
T COG1643 204 TLDAERFSAYFGNAPVIEIEG 224 (845)
T ss_pred ccCHHHHHHHcCCCCEEEecC
Confidence 5 45566667788744433
No 486
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=93.53 E-value=0.77 Score=49.14 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=20.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.+++|+|..|+|||||.+.+..-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (491)
T PRK10982 25 SIHALMGENGAGKSTLLKCLFGI 47 (491)
T ss_pred cEEEEECCCCCCHHHHHHHHcCC
Confidence 58999999999999999998763
No 487
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.52 E-value=0.055 Score=47.77 Aligned_cols=20 Identities=10% Similarity=0.079 Sum_probs=18.8
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q 010117 193 VAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 193 i~I~G~gGvGKTtLA~~v~~ 212 (518)
|.|+|+.|.||||+|+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999999987
No 488
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.49 E-value=0.29 Score=49.02 Aligned_cols=24 Identities=13% Similarity=0.156 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
...+|.++|++|+||||++..+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999988876
No 489
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=93.47 E-value=0.63 Score=50.78 Aligned_cols=53 Identities=15% Similarity=0.133 Sum_probs=31.5
Q ss_pred HHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCCCCCCcEEEEEecchhhhhhc
Q 010117 266 LQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPDNQNGSRVLITLLWFELQKGE 318 (518)
Q Consensus 266 l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~~~gskIivTTR~~~va~~~ 318 (518)
|.+.+-.++=+++||+.-+ |......+...+....++..||+.|.+......+
T Consensus 480 LARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~ 534 (571)
T TIGR02203 480 IARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKA 534 (571)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhC
Confidence 3444444566788898766 5566666666555443455566666666665544
No 490
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=93.46 E-value=0.94 Score=50.88 Aligned_cols=24 Identities=33% Similarity=0.195 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
-..++|+|..|.|||||++.+..-
T Consensus 507 Ge~vaIvG~SGsGKSTLl~lL~gl 530 (711)
T TIGR00958 507 GEVVALVGPSGSGKSTVAALLQNL 530 (711)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999998764
No 491
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=93.45 E-value=0.94 Score=50.16 Aligned_cols=52 Identities=13% Similarity=0.140 Sum_probs=32.2
Q ss_pred HHHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCCCCCCcEEEEEecchhhhh
Q 010117 263 KSILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPDNQNGSRVLITLLWFELQK 316 (518)
Q Consensus 263 ~~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~~~gskIivTTR~~~va~ 316 (518)
.-.|...|-.+.=+|+||.--+ |...-..+...+... +..||++|.+.....
T Consensus 157 Rv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~ 210 (638)
T PRK10636 157 RLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLD 210 (638)
T ss_pred HHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHH
Confidence 3445666667778999999877 433333344444332 235888888875544
No 492
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.45 E-value=0.068 Score=48.52 Aligned_cols=24 Identities=4% Similarity=0.056 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.+.|.|+|+.|.||||+++.+.+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHH
Confidence 356999999999999999999873
No 493
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=93.43 E-value=0.25 Score=51.39 Aligned_cols=91 Identities=8% Similarity=0.082 Sum_probs=49.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCC-CCCHHHHHHHHHhhcCCCCC--------CCccccCCHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSI-AYDFGKILDDIINPVMPPSR--------VSVIIGEDYQ 260 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~~--------~~~~~~~~~~ 260 (518)
-..++|+|..|+|||||++.+.+.... +..+...+.. .-++.++....+..-+.... ..........
T Consensus 155 GQ~igI~G~sGaGKSTLl~~I~g~~~~----dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~a~ 230 (434)
T PRK07196 155 GQRVGLMAGSGVGKSVLLGMITRYTQA----DVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKAT 230 (434)
T ss_pred ceEEEEECCCCCCccHHHHHHhcccCC----CeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHHHH
Confidence 468999999999999999998873221 2222222322 22344444343333221110 0000111222
Q ss_pred HHHHHHHHHh--ccCcEEEEEcCCCC
Q 010117 261 LKKSILQDYL--TAKKYFIVLDDVFD 284 (518)
Q Consensus 261 ~~~~~l~~~L--~~kr~LlVLDdvw~ 284 (518)
+....+.++. ++++.||++||+-.
T Consensus 231 e~a~~iAEyfr~~g~~Vll~~Dsltr 256 (434)
T PRK07196 231 ELCHAIATYYRDKGHDVLLLVDSLTR 256 (434)
T ss_pred HHHHHHHHHhhhccCCEEEeecchhH
Confidence 2333455554 57899999999855
No 494
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=93.43 E-value=0.87 Score=49.42 Aligned_cols=24 Identities=21% Similarity=0.141 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
-..++|+|..|.|||||++.+..-
T Consensus 344 G~~~~ivG~sGsGKSTL~~ll~g~ 367 (544)
T TIGR01842 344 GEALAIIGPSGSGKSTLARLIVGI 367 (544)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999764
No 495
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.42 E-value=0.48 Score=47.08 Aligned_cols=91 Identities=14% Similarity=0.137 Sum_probs=51.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCccccc-ceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHH
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKFYF-DCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDY 269 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F-~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 269 (518)
..|.|+|..|.||||+++.+.+ .+.... +.++ +++-.... +. +..................+.++..
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~--~i~~~~~~~ri-~tiEd~~E---l~------~~~~~~v~~~~~~~~~~~~~~l~~a 200 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLA--EIAKNDPTDRV-VIIEDTRE---LQ------CAAPNVVQLRTSDDAISMTRLLKAT 200 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HhhccCCCceE-EEECCchh---hc------CCCCCEEEEEecCCCCCHHHHHHHH
Confidence 4577999999999999999987 333221 1222 23322211 10 0000000000000111456677888
Q ss_pred hccCcEEEEEcCCCCChHHHHHHhh
Q 010117 270 LTAKKYFIVLDDVFDDSEIWHDLVE 294 (518)
Q Consensus 270 L~~kr~LlVLDdvw~~~~~~~~l~~ 294 (518)
|+...=-||+..+.+ .+.|+-+..
T Consensus 201 LR~~pD~iivGEiR~-~ea~~~l~a 224 (299)
T TIGR02782 201 LRLRPDRIIVGEVRG-GEALDLLKA 224 (299)
T ss_pred hcCCCCEEEEeccCC-HHHHHHHHH
Confidence 888877889999999 777765443
No 496
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=93.41 E-value=1.1 Score=48.87 Aligned_cols=123 Identities=12% Similarity=-0.002 Sum_probs=64.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCc-cc--ccce---EEEEEcCCCC-------CHHHH----------------HHHH
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHV-KF--YFDC---HAWVRVSIAY-------DFGKI----------------LDDI 241 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~-~~--~F~~---~~wv~vs~~~-------~~~~i----------------~~~i 241 (518)
.+++|+|..|+|||||.+.++....- .+ .|.. +.++ .+.+ ++.+. ...+
T Consensus 351 e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v--~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~ 428 (556)
T PRK11819 351 GIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYV--DQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAY 428 (556)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEE--eCchhhcCCCCCHHHHHHhhcccccccccHHHHHHH
Confidence 58999999999999999999864211 11 1111 2222 2211 12111 1233
Q ss_pred HhhcCCCCC--CCccccCCHHHHH-HHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCCCCCCcEEEEEecchhhhh
Q 010117 242 INPVMPPSR--VSVIIGEDYQLKK-SILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPDNQNGSRVLITLLWFELQK 316 (518)
Q Consensus 242 ~~~l~~~~~--~~~~~~~~~~~~~-~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~~~gskIivTTR~~~va~ 316 (518)
+..++.... ...+...+..+.+ -.+...+..+.=+|+||.--. |...-..+...+..- .| .||++|.+...+.
T Consensus 429 l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~-tvi~vtHd~~~~~ 506 (556)
T PRK11819 429 VGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF-PG-CAVVISHDRWFLD 506 (556)
T ss_pred HHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-CC-eEEEEECCHHHHH
Confidence 444443211 1112233333333 355666677788999999766 443333444333322 25 4888888866544
Q ss_pred h
Q 010117 317 G 317 (518)
Q Consensus 317 ~ 317 (518)
.
T Consensus 507 ~ 507 (556)
T PRK11819 507 R 507 (556)
T ss_pred H
Confidence 3
No 497
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.41 E-value=0.1 Score=52.17 Aligned_cols=48 Identities=19% Similarity=0.125 Sum_probs=31.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILD 239 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~ 239 (518)
.+++.+.|.|||||||+|....- ........++=|+..+..++.+++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhhc
Confidence 47899999999999999887443 2222333356666666555555443
No 498
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=93.40 E-value=1 Score=40.95 Aligned_cols=54 Identities=22% Similarity=0.212 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcC-CCCCCcEEEEEecchh
Q 010117 260 QLKKSILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLP-DNQNGSRVLITLLWFE 313 (518)
Q Consensus 260 ~~~~~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~-~~~~gskIivTTR~~~ 313 (518)
++..-.+.+.+-.++-|-+||.... |...-..+...+. ....|.-||.||..+-
T Consensus 135 QqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l 191 (209)
T COG4133 135 QQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPL 191 (209)
T ss_pred HHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Confidence 3444556677778889999999877 4444444443333 3456788999998653
No 499
>PRK06761 hypothetical protein; Provisional
Probab=93.39 E-value=0.13 Score=50.41 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=21.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
++|.|.|+.|+||||+++.+++.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~ 26 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDI 26 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999984
No 500
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.39 E-value=0.83 Score=43.59 Aligned_cols=24 Identities=13% Similarity=0.050 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
-.+++|+|..|.|||||.+.+...
T Consensus 25 Ge~~~i~G~nG~GKStLl~~l~G~ 48 (235)
T cd03299 25 GDYFVILGPTGSGKSVLLETIAGF 48 (235)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999764
Done!