Query 010117
Match_columns 518
No_of_seqs 355 out of 2823
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 20:16:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010117.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010117hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 4.7E-45 1.6E-49 392.2 19.8 270 172-464 133-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 5.2E-36 1.8E-40 351.3 21.2 268 172-462 129-452 (1249)
3 1vt4_I APAF-1 related killer D 100.0 2.4E-36 8.2E-41 331.4 14.9 247 172-455 133-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 3.4E-32 1.2E-36 295.3 21.8 264 172-459 129-449 (591)
5 3qfl_A MLA10; coiled-coil, (CC 99.4 3.4E-13 1.2E-17 112.6 9.0 83 20-111 2-85 (115)
6 1w5s_A Origin recognition comp 99.2 2.8E-11 9.5E-16 124.5 12.2 137 172-313 27-190 (412)
7 2qen_A Walker-type ATPase; unk 99.0 5.5E-09 1.9E-13 104.6 16.4 130 172-313 17-175 (350)
8 1fnn_A CDC6P, cell division co 99.0 7.7E-08 2.6E-12 97.7 22.8 138 172-314 22-171 (389)
9 2fna_A Conserved hypothetical 98.8 8.3E-08 2.8E-12 96.1 16.3 129 172-313 18-181 (357)
10 2qby_B CDC6 homolog 3, cell di 98.7 4.3E-08 1.5E-12 99.5 10.1 135 172-312 25-174 (384)
11 2v1u_A Cell division control p 98.6 1.3E-07 4.5E-12 95.8 11.1 135 172-312 24-177 (387)
12 2qby_A CDC6 homolog 1, cell di 98.6 7.9E-08 2.7E-12 97.3 8.8 138 172-314 25-175 (386)
13 2chg_A Replication factor C sm 98.5 3.5E-07 1.2E-11 84.7 9.8 118 172-312 22-142 (226)
14 1njg_A DNA polymerase III subu 98.4 1.2E-06 4.1E-11 82.1 11.3 133 172-312 28-166 (250)
15 1sxj_B Activator 1 37 kDa subu 98.2 2.7E-06 9.3E-11 83.8 8.4 112 172-312 26-147 (323)
16 3te6_A Regulatory protein SIR3 98.1 1.7E-05 5.8E-10 77.9 12.7 107 172-284 25-143 (318)
17 1hqc_A RUVB; extended AAA-ATPa 98.0 6.4E-06 2.2E-10 81.4 7.5 41 172-212 17-60 (324)
18 1iqp_A RFCS; clamp loader, ext 97.9 9.2E-06 3.2E-10 80.1 6.4 112 172-312 30-150 (327)
19 1jbk_A CLPB protein; beta barr 97.8 1.8E-05 6.2E-10 71.1 6.1 40 172-213 27-66 (195)
20 3ec2_A DNA replication protein 97.7 4.9E-05 1.7E-09 68.2 7.4 119 172-311 19-142 (180)
21 2w58_A DNAI, primosome compone 97.6 0.00017 5.8E-09 65.8 8.6 91 172-284 34-126 (202)
22 2chq_A Replication factor C sm 97.5 7.6E-05 2.6E-09 73.2 5.6 115 172-312 22-142 (319)
23 3n70_A Transport activator; si 97.5 0.00013 4.5E-09 63.0 6.2 89 191-311 25-115 (145)
24 2p65_A Hypothetical protein PF 97.5 0.00011 3.9E-09 65.5 6.0 40 172-213 27-66 (187)
25 1jr3_A DNA polymerase III subu 97.5 0.00059 2E-08 68.4 11.5 133 172-312 21-159 (373)
26 2z4s_A Chromosomal replication 97.5 0.00015 5E-09 75.0 7.0 114 176-311 117-236 (440)
27 3h4m_A Proteasome-activating n 97.4 0.00022 7.4E-09 68.9 7.4 42 172-213 22-74 (285)
28 3syl_A Protein CBBX; photosynt 97.4 0.00039 1.3E-08 67.9 8.3 104 189-312 66-179 (309)
29 3co5_A Putative two-component 97.2 0.00021 7.2E-09 61.5 4.4 22 192-213 29-50 (143)
30 2qz4_A Paraplegin; AAA+, SPG7, 97.2 0.001 3.6E-08 63.0 9.7 72 189-284 38-109 (262)
31 1d2n_A N-ethylmaleimide-sensit 97.2 0.0012 4.1E-08 63.2 9.9 35 179-213 52-87 (272)
32 3bos_A Putative DNA replicatio 97.2 0.00013 4.5E-09 68.1 2.7 54 173-230 37-90 (242)
33 3u61_B DNA polymerase accessor 97.2 0.0013 4.3E-08 64.8 9.9 110 172-313 31-147 (324)
34 2kjq_A DNAA-related protein; s 97.2 0.0002 6.8E-09 62.3 3.5 24 190-213 36-59 (149)
35 1l8q_A Chromosomal replication 97.1 0.00046 1.6E-08 68.0 6.3 114 176-311 23-140 (324)
36 1a5t_A Delta prime, HOLB; zinc 97.1 0.0035 1.2E-07 62.0 12.7 117 172-312 7-148 (334)
37 2cvh_A DNA repair and recombin 97.1 0.0018 6.2E-08 59.5 9.6 89 190-284 20-116 (220)
38 1sxj_D Activator 1 41 kDa subu 97.1 0.00073 2.5E-08 67.1 7.3 127 172-311 42-172 (353)
39 3uk6_A RUVB-like 2; hexameric 97.1 0.0055 1.9E-07 61.2 13.8 38 176-213 56-93 (368)
40 1sxj_E Activator 1 40 kDa subu 97.1 0.0014 4.7E-08 65.3 9.2 39 172-212 19-58 (354)
41 3eie_A Vacuolar protein sortin 97.1 0.0015 5.2E-08 64.3 9.0 41 172-212 23-73 (322)
42 2gno_A DNA polymerase III, gam 97.0 0.0043 1.5E-07 60.6 11.5 115 175-312 5-122 (305)
43 1xwi_A SKD1 protein; VPS4B, AA 96.9 0.0071 2.4E-07 59.5 12.6 24 190-213 45-68 (322)
44 3cf0_A Transitional endoplasmi 96.9 0.0068 2.3E-07 59.0 11.8 72 189-284 48-119 (301)
45 2vhj_A Ntpase P4, P4; non- hyd 96.9 0.0011 3.8E-08 64.6 6.0 69 190-284 123-193 (331)
46 1sxj_C Activator 1 40 kDa subu 96.8 0.0042 1.5E-07 61.5 9.5 39 172-212 30-68 (340)
47 4fcw_A Chaperone protein CLPB; 96.7 0.0028 9.6E-08 61.7 7.4 95 190-296 47-143 (311)
48 3t15_A Ribulose bisphosphate c 96.7 0.0023 7.8E-08 62.1 6.6 24 189-212 35-58 (293)
49 3pfi_A Holliday junction ATP-d 96.7 0.0062 2.1E-07 60.1 9.9 41 172-212 34-77 (338)
50 3d8b_A Fidgetin-like protein 1 96.6 0.0033 1.1E-07 62.9 7.7 25 189-213 116-140 (357)
51 2bjv_A PSP operon transcriptio 96.6 0.0027 9.1E-08 60.5 6.6 23 191-213 30-52 (265)
52 2zan_A Vacuolar protein sortin 96.6 0.011 3.8E-07 60.8 11.6 42 172-213 139-190 (444)
53 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.0048 1.6E-07 57.0 8.1 117 191-312 24-168 (235)
54 2cbz_A Multidrug resistance-as 96.6 0.018 6.1E-07 53.9 11.9 54 265-318 137-195 (237)
55 3pvs_A Replication-associated 96.5 0.0067 2.3E-07 62.5 9.4 34 177-212 39-72 (447)
56 1sxj_A Activator 1 95 kDa subu 96.5 0.0059 2E-07 64.2 9.2 126 172-311 44-188 (516)
57 2qp9_X Vacuolar protein sortin 96.5 0.0066 2.2E-07 60.6 9.1 23 190-212 84-106 (355)
58 3lw7_A Adenylate kinase relate 96.5 0.012 4.2E-07 51.4 9.9 20 191-210 2-21 (179)
59 1lv7_A FTSH; alpha/beta domain 96.5 0.0064 2.2E-07 57.5 8.4 23 191-213 46-68 (257)
60 2pze_A Cystic fibrosis transme 96.4 0.033 1.1E-06 51.7 12.7 54 265-318 140-196 (229)
61 3vfd_A Spastin; ATPase, microt 96.4 0.0089 3E-07 60.4 9.1 41 172-212 120-170 (389)
62 2qgz_A Helicase loader, putati 96.3 0.0059 2E-07 59.7 6.7 55 172-228 133-189 (308)
63 2pjz_A Hypothetical protein ST 96.2 0.034 1.2E-06 52.8 11.5 123 191-316 31-189 (263)
64 3tif_A Uncharacterized ABC tra 96.2 0.035 1.2E-06 51.8 11.3 55 264-318 154-212 (235)
65 3c8u_A Fructokinase; YP_612366 96.1 0.0047 1.6E-07 56.5 5.0 38 175-212 7-44 (208)
66 1ojl_A Transcriptional regulat 96.1 0.026 9.1E-07 54.9 10.6 39 175-213 10-48 (304)
67 2z43_A DNA repair and recombin 96.1 0.02 6.8E-07 56.3 9.8 94 190-284 107-214 (324)
68 1n0w_A DNA repair protein RAD5 96.1 0.018 6.1E-07 53.6 9.0 94 190-284 24-130 (243)
69 3hu3_A Transitional endoplasmi 96.1 0.017 5.7E-07 60.2 9.5 70 189-282 237-306 (489)
70 3hr8_A Protein RECA; alpha and 96.1 0.012 4.2E-07 58.5 8.0 89 189-284 60-150 (356)
71 1odf_A YGR205W, hypothetical 3 96.0 0.036 1.2E-06 53.5 10.9 85 186-272 27-117 (290)
72 2pcj_A ABC transporter, lipopr 96.0 0.059 2E-06 49.8 11.9 127 191-317 31-205 (224)
73 2ce7_A Cell division protein F 96.0 0.013 4.6E-07 60.6 8.1 100 191-314 50-166 (476)
74 1v5w_A DMC1, meiotic recombina 96.0 0.045 1.5E-06 54.2 11.6 95 189-284 121-230 (343)
75 2b8t_A Thymidine kinase; deoxy 96.0 0.0052 1.8E-07 56.9 4.4 113 190-312 12-126 (223)
76 1sgw_A Putative ABC transporte 95.9 0.018 6E-07 53.0 7.9 126 191-316 36-197 (214)
77 1rz3_A Hypothetical protein rb 95.9 0.0087 3E-07 54.4 5.8 41 172-212 3-44 (201)
78 1vpl_A ABC transporter, ATP-bi 95.9 0.046 1.6E-06 51.7 11.0 127 191-317 42-211 (256)
79 3b9p_A CG5977-PA, isoform A; A 95.9 0.011 3.6E-07 57.2 6.5 23 190-212 54-76 (297)
80 2i1q_A DNA repair and recombin 95.9 0.026 8.9E-07 55.3 9.2 95 189-284 97-215 (322)
81 2zu0_C Probable ATP-dependent 95.8 0.13 4.6E-06 48.8 13.9 54 264-317 173-229 (267)
82 2zr9_A Protein RECA, recombina 95.8 0.017 6E-07 57.3 7.9 89 189-284 60-150 (349)
83 4g1u_C Hemin import ATP-bindin 95.8 0.057 1.9E-06 51.4 11.2 126 191-316 38-212 (266)
84 1u94_A RECA protein, recombina 95.8 0.017 5.7E-07 57.6 7.6 89 189-284 62-152 (356)
85 1xp8_A RECA protein, recombina 95.8 0.02 6.8E-07 57.3 8.1 88 190-284 74-163 (366)
86 2ff7_A Alpha-hemolysin translo 95.7 0.032 1.1E-06 52.5 9.0 22 191-212 36-57 (247)
87 1r6b_X CLPA protein; AAA+, N-t 95.7 0.098 3.3E-06 57.6 14.1 39 172-212 191-229 (758)
88 3pxg_A Negative regulator of g 95.7 0.014 4.8E-07 60.5 6.9 39 172-212 185-223 (468)
89 1pzn_A RAD51, DNA repair and r 95.7 0.033 1.1E-06 55.3 9.3 95 189-284 130-242 (349)
90 2px0_A Flagellar biosynthesis 95.7 0.027 9.3E-07 54.5 8.3 87 189-282 104-191 (296)
91 2bbs_A Cystic fibrosis transme 95.6 0.095 3.2E-06 50.5 12.0 54 265-318 169-225 (290)
92 2ghi_A Transport protein; mult 95.6 0.074 2.5E-06 50.4 11.1 22 191-212 47-68 (260)
93 2yz2_A Putative ABC transporte 95.6 0.072 2.5E-06 50.6 11.0 52 265-316 148-202 (266)
94 3tui_C Methionine import ATP-b 95.6 0.076 2.6E-06 52.8 11.4 125 191-317 55-229 (366)
95 3pxi_A Negative regulator of g 95.6 0.015 5.1E-07 64.2 6.9 96 190-310 521-628 (758)
96 2ixe_A Antigen peptide transpo 95.5 0.12 4.1E-06 49.2 12.3 54 265-318 166-223 (271)
97 1ukz_A Uridylate kinase; trans 95.5 0.1 3.5E-06 47.0 11.2 24 189-212 14-37 (203)
98 1qvr_A CLPB protein; coiled co 95.5 0.025 8.5E-07 63.3 8.3 39 172-212 175-213 (854)
99 2nq2_C Hypothetical ABC transp 95.5 0.05 1.7E-06 51.3 9.2 125 191-315 32-192 (253)
100 3jvv_A Twitching mobility prot 95.4 0.0057 2E-07 61.0 2.6 112 191-318 124-237 (356)
101 1j8m_F SRP54, signal recogniti 95.4 0.057 1.9E-06 52.3 9.5 92 190-284 98-191 (297)
102 2xxa_A Signal recognition part 95.3 0.069 2.4E-06 54.6 10.3 41 172-212 75-122 (433)
103 2r62_A Cell division protease 95.3 0.0037 1.3E-07 59.5 0.7 22 192-213 46-67 (268)
104 3io5_A Recombination and repai 95.2 0.053 1.8E-06 52.6 8.6 86 192-284 30-122 (333)
105 1vma_A Cell division protein F 95.2 0.046 1.6E-06 53.2 8.3 41 172-212 80-126 (306)
106 1qhx_A CPT, protein (chloramph 95.2 0.0097 3.3E-07 52.6 3.0 22 191-212 4-25 (178)
107 1zp6_A Hypothetical protein AT 95.2 0.011 3.7E-07 53.0 3.4 24 190-213 9-32 (191)
108 2c9o_A RUVB-like 1; hexameric 95.2 0.037 1.2E-06 57.2 7.7 36 178-213 51-86 (456)
109 3kb2_A SPBC2 prophage-derived 95.1 0.01 3.4E-07 52.0 3.0 22 191-212 2-23 (173)
110 2x8a_A Nuclear valosin-contain 95.1 0.048 1.6E-06 52.1 8.0 21 193-213 47-67 (274)
111 1qvr_A CLPB protein; coiled co 95.1 0.028 9.4E-07 62.9 7.2 110 190-311 588-710 (854)
112 3m6a_A ATP-dependent protease 95.1 0.024 8.3E-07 59.9 6.3 24 189-212 107-130 (543)
113 4eun_A Thermoresistant glucoki 95.1 0.056 1.9E-06 48.8 8.0 23 190-212 29-51 (200)
114 3e70_C DPA, signal recognition 95.1 0.071 2.4E-06 52.4 9.2 24 189-212 128-151 (328)
115 1kgd_A CASK, peripheral plasma 95.0 0.011 3.8E-07 52.6 3.0 22 191-212 6-27 (180)
116 3kl4_A SRP54, signal recogniti 95.0 0.066 2.2E-06 54.6 8.9 41 172-212 72-119 (433)
117 3vaa_A Shikimate kinase, SK; s 94.9 0.013 4.3E-07 53.2 3.1 23 190-212 25-47 (199)
118 1ly1_A Polynucleotide kinase; 94.9 0.014 4.6E-07 51.6 3.3 22 191-212 3-24 (181)
119 1gvn_B Zeta; postsegregational 94.9 0.026 8.9E-07 54.4 5.5 41 172-212 12-55 (287)
120 4b4t_K 26S protease regulatory 94.9 0.037 1.3E-06 56.4 6.8 71 189-283 205-275 (428)
121 3pxi_A Negative regulator of g 94.9 0.043 1.5E-06 60.5 7.8 39 172-212 185-223 (758)
122 3upu_A ATP-dependent DNA helic 94.9 0.12 4E-06 53.4 10.5 38 172-212 30-67 (459)
123 1kag_A SKI, shikimate kinase I 94.8 0.011 3.8E-07 51.9 2.4 22 191-212 5-26 (173)
124 1z47_A CYSA, putative ABC-tran 94.8 0.12 4E-06 51.3 10.1 125 191-317 42-211 (355)
125 2dhr_A FTSH; AAA+ protein, hex 94.8 0.072 2.4E-06 55.4 8.9 21 193-213 67-87 (499)
126 3dm5_A SRP54, signal recogniti 94.8 0.09 3.1E-06 53.7 9.4 41 172-212 76-122 (443)
127 4b4t_L 26S protease subunit RP 94.8 0.043 1.5E-06 56.0 7.0 72 189-284 214-285 (437)
128 2it1_A 362AA long hypothetical 94.8 0.16 5.3E-06 50.6 10.9 124 191-316 30-198 (362)
129 1g5t_A COB(I)alamin adenosyltr 94.8 0.022 7.7E-07 51.3 4.2 120 191-312 29-163 (196)
130 4b4t_J 26S protease regulatory 94.7 0.025 8.7E-07 56.9 5.0 72 189-284 181-252 (405)
131 3d31_A Sulfate/molybdate ABC t 94.7 0.12 4.1E-06 51.1 9.8 124 191-316 27-192 (348)
132 2p5t_B PEZT; postsegregational 94.7 0.028 9.5E-07 53.1 5.0 41 172-212 11-54 (253)
133 1fx0_B ATP synthase beta chain 94.7 0.063 2.2E-06 55.2 7.9 105 178-284 154-277 (498)
134 3uie_A Adenylyl-sulfate kinase 94.7 0.018 6.1E-07 52.2 3.5 23 190-212 25-47 (200)
135 3tr0_A Guanylate kinase, GMP k 94.7 0.016 5.4E-07 52.5 3.1 22 191-212 8-29 (205)
136 4b4t_H 26S protease regulatory 94.7 0.053 1.8E-06 55.4 7.2 73 188-284 241-313 (467)
137 3trf_A Shikimate kinase, SK; a 94.6 0.016 5.5E-07 51.5 3.0 23 190-212 5-27 (185)
138 3fvq_A Fe(3+) IONS import ATP- 94.6 0.2 6.8E-06 49.7 11.2 123 191-317 31-204 (359)
139 3nh6_A ATP-binding cassette SU 94.6 0.075 2.6E-06 51.6 7.9 23 190-212 80-102 (306)
140 3ice_A Transcription terminati 94.6 0.022 7.5E-07 56.8 4.0 53 177-233 162-217 (422)
141 1nks_A Adenylate kinase; therm 94.6 0.018 6.1E-07 51.4 3.2 22 191-212 2-23 (194)
142 4b4t_M 26S protease regulatory 94.6 0.036 1.2E-06 56.5 5.7 31 188-220 213-243 (434)
143 4gp7_A Metallophosphoesterase; 94.6 0.017 5.7E-07 51.0 2.9 23 190-212 9-31 (171)
144 1knq_A Gluconate kinase; ALFA/ 94.6 0.019 6.5E-07 50.6 3.3 23 190-212 8-30 (175)
145 3lda_A DNA repair protein RAD5 94.6 0.14 4.9E-06 51.6 10.1 94 190-284 178-284 (400)
146 3rlf_A Maltose/maltodextrin im 94.6 0.15 5.2E-06 50.9 10.2 125 191-317 30-199 (381)
147 2bdt_A BH3686; alpha-beta prot 94.5 0.02 6.9E-07 51.2 3.4 22 191-212 3-24 (189)
148 1ex7_A Guanylate kinase; subst 94.5 0.015 5E-07 52.3 2.4 22 191-212 2-23 (186)
149 2ck3_D ATP synthase subunit be 94.5 0.053 1.8E-06 55.5 6.7 105 178-284 142-264 (482)
150 3t61_A Gluconokinase; PSI-biol 94.5 0.014 4.9E-07 52.8 2.3 23 190-212 18-40 (202)
151 2rhm_A Putative kinase; P-loop 94.5 0.022 7.4E-07 50.9 3.5 23 190-212 5-27 (193)
152 3asz_A Uridine kinase; cytidin 94.5 0.022 7.4E-07 51.9 3.5 23 190-212 6-28 (211)
153 3a00_A Guanylate kinase, GMP k 94.5 0.016 5.5E-07 51.8 2.5 22 191-212 2-23 (186)
154 3cf2_A TER ATPase, transitiona 94.4 0.048 1.6E-06 59.9 6.7 72 189-284 237-308 (806)
155 2yyz_A Sugar ABC transporter, 94.4 0.16 5.6E-06 50.4 10.0 125 191-317 30-199 (359)
156 1ye8_A Protein THEP1, hypothet 94.4 0.021 7E-07 50.9 3.1 22 192-213 2-23 (178)
157 3tau_A Guanylate kinase, GMP k 94.4 0.02 6.8E-07 52.3 3.0 24 190-213 8-31 (208)
158 1kht_A Adenylate kinase; phosp 94.4 0.02 6.9E-07 51.0 3.0 22 191-212 4-25 (192)
159 2qt1_A Nicotinamide riboside k 94.4 0.025 8.7E-07 51.4 3.7 24 189-212 20-43 (207)
160 2jaq_A Deoxyguanosine kinase; 94.3 0.021 7E-07 51.5 3.0 21 192-212 2-22 (205)
161 3bh0_A DNAB-like replicative h 94.3 0.13 4.4E-06 50.2 8.9 52 189-244 67-118 (315)
162 2ffh_A Protein (FFH); SRP54, s 94.3 0.11 3.7E-06 52.9 8.5 23 190-212 98-120 (425)
163 2hf9_A Probable hydrogenase ni 94.3 0.043 1.5E-06 50.4 5.2 40 172-213 22-61 (226)
164 2j41_A Guanylate kinase; GMP, 94.3 0.022 7.4E-07 51.6 3.0 23 191-213 7-29 (207)
165 2if2_A Dephospho-COA kinase; a 94.3 0.021 7.2E-07 51.7 2.9 22 191-212 2-23 (204)
166 1uf9_A TT1252 protein; P-loop, 94.3 0.026 8.8E-07 50.9 3.5 25 188-212 6-30 (203)
167 1ypw_A Transitional endoplasmi 94.3 0.075 2.6E-06 58.9 7.9 88 172-283 209-307 (806)
168 2ze6_A Isopentenyl transferase 94.2 0.023 8E-07 53.6 3.3 22 191-212 2-23 (253)
169 3thx_A DNA mismatch repair pro 94.2 0.098 3.4E-06 58.6 8.7 52 271-323 739-796 (934)
170 3gd7_A Fusion complex of cysti 94.2 0.12 4.2E-06 51.9 8.7 22 191-212 48-69 (390)
171 2dr3_A UPF0273 protein PH0284; 94.2 0.18 6.2E-06 46.6 9.4 90 190-284 23-139 (247)
172 1lvg_A Guanylate kinase, GMP k 94.2 0.02 6.7E-07 51.9 2.5 22 191-212 5-26 (198)
173 1r6b_X CLPA protein; AAA+, N-t 94.2 0.084 2.9E-06 58.1 8.1 93 190-297 488-582 (758)
174 3iij_A Coilin-interacting nucl 94.2 0.021 7.1E-07 50.6 2.6 23 190-212 11-33 (180)
175 1zuh_A Shikimate kinase; alpha 94.2 0.024 8.3E-07 49.5 3.0 24 189-212 6-29 (168)
176 1cke_A CK, MSSA, protein (cyti 94.2 0.024 8.1E-07 52.2 3.1 22 191-212 6-27 (227)
177 3p32_A Probable GTPase RV1496/ 94.1 0.048 1.6E-06 54.2 5.5 37 176-212 65-101 (355)
178 3fwy_A Light-independent proto 94.1 0.028 9.4E-07 55.0 3.5 24 189-212 47-70 (314)
179 1jjv_A Dephospho-COA kinase; P 94.1 0.029 9.8E-07 50.9 3.5 22 191-212 3-24 (206)
180 2qor_A Guanylate kinase; phosp 94.1 0.02 7E-07 52.0 2.4 24 190-213 12-35 (204)
181 1via_A Shikimate kinase; struc 94.1 0.021 7.3E-07 50.3 2.4 22 191-212 5-26 (175)
182 1tev_A UMP-CMP kinase; ploop, 94.0 0.029 9.9E-07 50.1 3.3 23 190-212 3-25 (196)
183 1znw_A Guanylate kinase, GMP k 94.0 0.027 9.3E-07 51.3 3.1 22 191-212 21-42 (207)
184 2bbw_A Adenylate kinase 4, AK4 94.0 0.028 9.6E-07 52.7 3.2 23 190-212 27-49 (246)
185 2wsm_A Hydrogenase expression/ 94.0 0.041 1.4E-06 50.3 4.3 39 173-213 15-53 (221)
186 2c95_A Adenylate kinase 1; tra 94.0 0.029 9.8E-07 50.3 3.2 23 190-212 9-31 (196)
187 1xjc_A MOBB protein homolog; s 93.9 0.029 9.9E-07 49.4 3.0 24 189-212 3-26 (169)
188 1sky_E F1-ATPase, F1-ATP synth 93.9 0.094 3.2E-06 53.8 7.2 63 179-243 141-204 (473)
189 2yhs_A FTSY, cell division pro 93.9 0.25 8.5E-06 51.0 10.3 41 172-212 268-315 (503)
190 2yvu_A Probable adenylyl-sulfa 93.9 0.031 1.1E-06 49.8 3.3 24 189-212 12-35 (186)
191 1y63_A LMAJ004144AAA protein; 93.9 0.032 1.1E-06 49.7 3.3 23 190-212 10-32 (184)
192 4a1f_A DNAB helicase, replicat 93.9 0.19 6.3E-06 49.5 9.0 51 190-244 46-96 (338)
193 2ewv_A Twitching motility prot 93.9 0.08 2.8E-06 53.0 6.5 112 190-318 136-250 (372)
194 3aez_A Pantothenate kinase; tr 93.9 0.034 1.2E-06 54.3 3.7 24 189-212 89-112 (312)
195 3cm0_A Adenylate kinase; ATP-b 93.9 0.033 1.1E-06 49.5 3.3 22 191-212 5-26 (186)
196 3a4m_A L-seryl-tRNA(SEC) kinas 93.9 0.032 1.1E-06 52.9 3.4 23 190-212 4-26 (260)
197 1htw_A HI0065; nucleotide-bind 93.8 0.037 1.3E-06 48.2 3.4 23 190-212 33-55 (158)
198 1zu4_A FTSY; GTPase, signal re 93.8 0.073 2.5E-06 52.1 5.9 24 189-212 104-127 (320)
199 2iyv_A Shikimate kinase, SK; t 93.8 0.024 8.2E-07 50.4 2.2 22 191-212 3-24 (184)
200 3tqc_A Pantothenate kinase; bi 93.8 0.07 2.4E-06 52.2 5.7 80 188-273 90-171 (321)
201 4a74_A DNA repair and recombin 93.8 0.094 3.2E-06 48.0 6.4 46 190-235 25-74 (231)
202 2plr_A DTMP kinase, probable t 93.7 0.034 1.2E-06 50.4 3.3 23 191-213 5-27 (213)
203 3ney_A 55 kDa erythrocyte memb 93.7 0.033 1.1E-06 50.4 3.0 24 189-212 18-41 (197)
204 2bwj_A Adenylate kinase 5; pho 93.7 0.032 1.1E-06 50.1 2.9 23 190-212 12-34 (199)
205 1in4_A RUVB, holliday junction 93.7 0.039 1.3E-06 54.4 3.8 24 189-212 50-73 (334)
206 2pt7_A CAG-ALFA; ATPase, prote 93.7 0.16 5.6E-06 49.8 8.3 109 191-317 172-280 (330)
207 1qf9_A UMP/CMP kinase, protein 93.7 0.036 1.2E-06 49.4 3.2 23 190-212 6-28 (194)
208 1z6g_A Guanylate kinase; struc 93.7 0.028 9.5E-07 51.8 2.6 22 191-212 24-45 (218)
209 3b5x_A Lipid A export ATP-bind 93.7 0.28 9.7E-06 52.1 10.8 23 190-212 369-391 (582)
210 2jeo_A Uridine-cytidine kinase 93.7 0.04 1.4E-06 51.6 3.7 23 190-212 25-47 (245)
211 1e6c_A Shikimate kinase; phosp 93.7 0.027 9.4E-07 49.3 2.4 22 191-212 3-24 (173)
212 3zvl_A Bifunctional polynucleo 93.7 0.11 3.9E-06 52.7 7.4 25 188-212 256-280 (416)
213 4b4t_I 26S protease regulatory 93.7 0.046 1.6E-06 55.3 4.3 30 189-220 215-244 (437)
214 2ga8_A Hypothetical 39.9 kDa p 93.7 0.068 2.3E-06 52.8 5.4 40 173-212 5-46 (359)
215 3l0o_A Transcription terminati 93.6 0.1 3.4E-06 52.1 6.4 56 175-232 161-217 (427)
216 1q57_A DNA primase/helicase; d 93.6 0.33 1.1E-05 50.6 11.0 57 185-244 237-293 (503)
217 3b9q_A Chloroplast SRP recepto 93.6 0.07 2.4E-06 51.8 5.3 41 172-212 73-122 (302)
218 1gtv_A TMK, thymidylate kinase 93.6 0.022 7.6E-07 51.9 1.6 22 191-212 1-22 (214)
219 2pbr_A DTMP kinase, thymidylat 93.5 0.038 1.3E-06 49.3 3.0 21 192-212 2-22 (195)
220 2f1r_A Molybdopterin-guanine d 93.5 0.028 9.6E-07 49.7 2.1 23 190-212 2-24 (171)
221 2z0h_A DTMP kinase, thymidylat 93.5 0.072 2.5E-06 47.6 4.9 21 192-212 2-22 (197)
222 4e22_A Cytidylate kinase; P-lo 93.5 0.039 1.3E-06 52.0 3.2 23 190-212 27-49 (252)
223 2pt5_A Shikimate kinase, SK; a 93.5 0.04 1.4E-06 48.0 3.1 21 192-212 2-22 (168)
224 2vli_A Antibiotic resistance p 93.4 0.029 9.9E-07 49.7 2.1 23 190-212 5-27 (183)
225 1rj9_A FTSY, signal recognitio 93.4 0.043 1.5E-06 53.4 3.5 24 189-212 101-124 (304)
226 3llm_A ATP-dependent RNA helic 93.4 0.51 1.8E-05 43.5 10.8 139 176-323 66-232 (235)
227 1s96_A Guanylate kinase, GMP k 93.4 0.041 1.4E-06 50.7 3.1 24 190-213 16-39 (219)
228 1uj2_A Uridine-cytidine kinase 93.3 0.045 1.5E-06 51.5 3.4 24 189-212 21-44 (252)
229 2cdn_A Adenylate kinase; phosp 93.3 0.042 1.4E-06 49.6 3.1 24 189-212 19-42 (201)
230 3umf_A Adenylate kinase; rossm 93.3 0.051 1.7E-06 50.0 3.6 25 188-212 27-51 (217)
231 1ls1_A Signal recognition part 93.2 0.18 6.1E-06 48.7 7.6 23 190-212 98-120 (295)
232 2ehv_A Hypothetical protein PH 93.2 0.043 1.5E-06 51.1 3.1 23 190-212 30-52 (251)
233 2j37_W Signal recognition part 93.2 0.3 1E-05 50.8 9.6 41 172-212 76-123 (504)
234 2og2_A Putative signal recogni 93.2 0.089 3.1E-06 52.3 5.5 41 172-212 130-179 (359)
235 2grj_A Dephospho-COA kinase; T 93.2 0.054 1.8E-06 48.8 3.6 25 188-212 10-34 (192)
236 3tlx_A Adenylate kinase 2; str 93.2 0.07 2.4E-06 49.9 4.5 24 189-212 28-51 (243)
237 1sq5_A Pantothenate kinase; P- 93.2 0.095 3.3E-06 50.9 5.6 24 189-212 79-102 (308)
238 1nn5_A Similar to deoxythymidy 93.2 0.047 1.6E-06 49.6 3.2 23 190-212 9-31 (215)
239 2onk_A Molybdate/tungstate ABC 93.2 0.047 1.6E-06 51.1 3.3 22 191-212 25-46 (240)
240 2wwf_A Thymidilate kinase, put 93.2 0.044 1.5E-06 49.7 3.0 23 190-212 10-32 (212)
241 2i3b_A HCR-ntpase, human cance 93.1 0.041 1.4E-06 49.5 2.7 21 192-212 3-23 (189)
242 3b60_A Lipid A export ATP-bind 93.1 0.29 9.9E-06 52.0 9.7 23 190-212 369-391 (582)
243 1zd8_A GTP:AMP phosphotransfer 93.0 0.046 1.6E-06 50.4 3.0 23 190-212 7-29 (227)
244 2pez_A Bifunctional 3'-phospho 93.0 0.054 1.8E-06 47.9 3.3 23 190-212 5-27 (179)
245 3lnc_A Guanylate kinase, GMP k 93.0 0.034 1.1E-06 51.6 2.0 22 191-212 28-50 (231)
246 1m7g_A Adenylylsulfate kinase; 93.0 0.055 1.9E-06 49.3 3.3 23 190-212 25-47 (211)
247 2v54_A DTMP kinase, thymidylat 92.9 0.05 1.7E-06 49.0 3.0 22 191-212 5-26 (204)
248 2f6r_A COA synthase, bifunctio 92.9 0.056 1.9E-06 51.8 3.4 24 189-212 74-97 (281)
249 3b85_A Phosphate starvation-in 92.9 0.046 1.6E-06 50.0 2.7 22 191-212 23-44 (208)
250 1ixz_A ATP-dependent metallopr 92.9 0.048 1.6E-06 51.3 2.8 21 193-213 52-72 (254)
251 2q6t_A DNAB replication FORK h 92.8 0.34 1.2E-05 49.6 9.4 57 185-244 195-251 (444)
252 1vht_A Dephospho-COA kinase; s 92.8 0.065 2.2E-06 49.0 3.6 23 190-212 4-26 (218)
253 1aky_A Adenylate kinase; ATP:A 92.8 0.056 1.9E-06 49.6 3.1 23 190-212 4-26 (220)
254 3vr4_D V-type sodium ATPase su 92.8 0.06 2.1E-06 54.8 3.5 92 191-284 152-259 (465)
255 1zak_A Adenylate kinase; ATP:A 92.7 0.05 1.7E-06 50.0 2.7 23 190-212 5-27 (222)
256 3bk7_A ABC transporter ATP-bin 92.7 0.44 1.5E-05 50.8 10.3 127 191-317 383-537 (607)
257 3fb4_A Adenylate kinase; psych 92.7 0.058 2E-06 49.2 3.1 21 192-212 2-22 (216)
258 1np6_A Molybdopterin-guanine d 92.7 0.06 2.1E-06 47.7 3.0 24 189-212 5-28 (174)
259 4eaq_A DTMP kinase, thymidylat 92.6 0.098 3.3E-06 48.5 4.6 25 189-213 25-49 (229)
260 1yrb_A ATP(GTP)binding protein 92.6 0.068 2.3E-06 50.3 3.5 24 189-212 13-36 (262)
261 3gfo_A Cobalt import ATP-bindi 92.6 0.056 1.9E-06 51.7 2.9 53 264-316 152-208 (275)
262 1b0u_A Histidine permease; ABC 92.6 0.056 1.9E-06 51.3 2.9 22 191-212 33-54 (262)
263 3hws_A ATP-dependent CLP prote 92.6 0.093 3.2E-06 52.2 4.6 25 189-213 50-74 (363)
264 3nwj_A ATSK2; P loop, shikimat 92.5 0.05 1.7E-06 51.2 2.4 22 191-212 49-70 (250)
265 2r9v_A ATP synthase subunit al 92.5 0.14 4.9E-06 52.7 5.9 102 178-284 164-278 (515)
266 1fx0_A ATP synthase alpha chai 92.5 0.15 5.2E-06 52.5 6.1 90 191-284 164-266 (507)
267 2d2e_A SUFC protein; ABC-ATPas 92.5 0.065 2.2E-06 50.5 3.2 22 191-212 30-51 (250)
268 2iw3_A Elongation factor 3A; a 92.5 0.6 2.1E-05 52.3 11.3 121 191-316 462-609 (986)
269 3dl0_A Adenylate kinase; phosp 92.5 0.064 2.2E-06 48.9 3.1 21 192-212 2-22 (216)
270 1ji0_A ABC transporter; ATP bi 92.5 0.06 2E-06 50.4 2.9 22 191-212 33-54 (240)
271 3d3q_A TRNA delta(2)-isopenten 92.5 0.066 2.3E-06 52.6 3.3 22 191-212 8-29 (340)
272 3ozx_A RNAse L inhibitor; ATP 92.5 0.33 1.1E-05 51.0 8.8 23 190-212 25-47 (538)
273 1g6h_A High-affinity branched- 92.4 0.061 2.1E-06 50.9 2.9 22 191-212 34-55 (257)
274 3a8t_A Adenylate isopentenyltr 92.4 0.076 2.6E-06 52.1 3.6 23 190-212 40-62 (339)
275 1ofh_A ATP-dependent HSL prote 92.4 0.061 2.1E-06 51.9 2.9 23 190-212 50-72 (310)
276 1mv5_A LMRA, multidrug resista 92.4 0.067 2.3E-06 50.1 3.1 22 191-212 29-50 (243)
277 2olj_A Amino acid ABC transpor 92.3 0.063 2.1E-06 51.0 2.9 22 191-212 51-72 (263)
278 3gqb_B V-type ATP synthase bet 92.3 0.075 2.6E-06 54.1 3.5 94 191-284 148-262 (464)
279 3ake_A Cytidylate kinase; CMP 92.3 0.07 2.4E-06 48.1 3.1 21 192-212 4-24 (208)
280 2wji_A Ferrous iron transport 92.3 0.11 3.6E-06 45.1 4.1 23 191-213 4-26 (165)
281 2v3c_C SRP54, signal recogniti 92.2 0.09 3.1E-06 53.7 4.0 41 172-212 74-121 (432)
282 3bgw_A DNAB-like replicative h 92.2 0.4 1.4E-05 49.1 8.9 51 189-243 196-246 (444)
283 1iy2_A ATP-dependent metallopr 92.2 0.065 2.2E-06 51.2 2.8 21 193-213 76-96 (278)
284 2qe7_A ATP synthase subunit al 92.2 0.18 6.1E-06 51.9 6.1 102 178-284 151-265 (502)
285 1fzq_A ADP-ribosylation factor 92.1 0.1 3.4E-06 46.1 3.8 26 188-213 14-39 (181)
286 1oix_A RAS-related protein RAB 92.1 0.076 2.6E-06 47.4 3.0 25 189-213 28-52 (191)
287 2r6a_A DNAB helicase, replicat 92.1 0.31 1.1E-05 50.1 8.0 50 190-242 203-252 (454)
288 2c61_A A-type ATP synthase non 92.1 0.085 2.9E-06 54.0 3.6 104 179-283 142-259 (469)
289 2dyk_A GTP-binding protein; GT 92.1 0.096 3.3E-06 44.7 3.5 23 191-213 2-24 (161)
290 3thx_B DNA mismatch repair pro 92.0 0.33 1.1E-05 54.2 8.6 51 271-322 750-806 (918)
291 2qi9_C Vitamin B12 import ATP- 92.0 0.074 2.5E-06 50.0 2.9 22 191-212 27-48 (249)
292 3r20_A Cytidylate kinase; stru 91.9 0.083 2.8E-06 49.1 3.1 23 190-212 9-31 (233)
293 3be4_A Adenylate kinase; malar 91.9 0.075 2.6E-06 48.7 2.7 22 191-212 6-27 (217)
294 2ihy_A ABC transporter, ATP-bi 91.9 0.077 2.6E-06 50.9 2.9 22 191-212 48-69 (279)
295 2yl4_A ATP-binding cassette SU 91.8 0.29 9.8E-06 52.2 7.6 23 190-212 370-392 (595)
296 3crm_A TRNA delta(2)-isopenten 91.8 0.088 3E-06 51.4 3.3 22 191-212 6-27 (323)
297 2zej_A Dardarin, leucine-rich 91.8 0.076 2.6E-06 47.0 2.7 22 192-213 4-25 (184)
298 3exa_A TRNA delta(2)-isopenten 91.8 0.09 3.1E-06 51.0 3.3 23 190-212 3-25 (322)
299 2xb4_A Adenylate kinase; ATP-b 91.8 0.088 3E-06 48.5 3.1 21 192-212 2-22 (223)
300 3qf4_A ABC transporter, ATP-bi 91.7 0.74 2.5E-05 48.9 10.7 23 190-212 369-391 (587)
301 1svm_A Large T antigen; AAA+ f 91.7 0.16 5.6E-06 50.8 5.1 35 178-212 157-191 (377)
302 2ged_A SR-beta, signal recogni 91.7 0.12 4.1E-06 45.8 3.8 25 189-213 47-71 (193)
303 1e4v_A Adenylate kinase; trans 91.6 0.091 3.1E-06 47.9 3.0 21 192-212 2-22 (214)
304 2eyu_A Twitching motility prot 91.6 0.1 3.5E-06 49.5 3.4 111 190-317 25-138 (261)
305 3end_A Light-independent proto 91.5 0.11 3.6E-06 50.4 3.5 25 188-212 39-63 (307)
306 2f9l_A RAB11B, member RAS onco 91.5 0.098 3.4E-06 46.9 3.1 24 190-213 5-28 (199)
307 1ltq_A Polynucleotide kinase; 91.5 0.098 3.4E-06 50.4 3.3 22 191-212 3-24 (301)
308 1tue_A Replication protein E1; 91.5 0.13 4.5E-06 46.6 3.8 38 174-212 43-80 (212)
309 1a7j_A Phosphoribulokinase; tr 91.5 0.058 2E-06 52.0 1.6 24 189-212 4-27 (290)
310 2ce2_X GTPase HRAS; signaling 91.5 0.12 4.2E-06 44.0 3.6 22 192-213 5-26 (166)
311 1ak2_A Adenylate kinase isoenz 91.5 0.1 3.6E-06 48.3 3.3 23 190-212 16-38 (233)
312 2vp4_A Deoxynucleoside kinase; 91.4 0.077 2.6E-06 49.1 2.3 24 189-212 19-42 (230)
313 2f7s_A C25KG, RAS-related prot 91.4 0.91 3.1E-05 40.8 9.7 25 189-213 24-48 (217)
314 2v9p_A Replication protein E1; 91.4 0.1 3.5E-06 50.6 3.2 23 190-212 126-148 (305)
315 4a82_A Cystic fibrosis transme 91.4 0.35 1.2E-05 51.4 7.6 23 190-212 367-389 (578)
316 3cmu_A Protein RECA, recombina 91.3 0.29 1E-05 58.7 7.5 88 189-283 1426-1515(2050)
317 1nij_A Hypothetical protein YJ 91.3 0.1 3.6E-06 50.9 3.2 25 189-213 3-27 (318)
318 2wjg_A FEOB, ferrous iron tran 91.3 0.13 4.4E-06 45.4 3.6 24 190-213 7-30 (188)
319 3foz_A TRNA delta(2)-isopenten 91.3 0.11 3.8E-06 50.2 3.3 24 189-212 9-32 (316)
320 1nlf_A Regulatory protein REPA 91.2 0.1 3.4E-06 49.9 3.0 23 190-212 30-52 (279)
321 3sr0_A Adenylate kinase; phosp 91.2 0.11 3.9E-06 47.2 3.1 21 192-212 2-22 (206)
322 4edh_A DTMP kinase, thymidylat 91.1 0.25 8.6E-06 45.1 5.5 23 190-212 6-28 (213)
323 1tq4_A IIGP1, interferon-induc 91.1 0.11 3.8E-06 52.6 3.3 35 178-212 57-91 (413)
324 1z2a_A RAS-related protein RAB 91.1 0.12 4.1E-06 44.4 3.1 24 190-213 5-28 (168)
325 2lkc_A Translation initiation 91.0 0.18 6.1E-06 43.8 4.3 25 189-213 7-31 (178)
326 3sop_A Neuronal-specific septi 91.0 0.11 3.8E-06 49.4 3.0 21 192-212 4-24 (270)
327 2p67_A LAO/AO transport system 91.0 0.23 8E-06 48.9 5.5 25 188-212 54-78 (341)
328 1cp2_A CP2, nitrogenase iron p 91.0 0.12 4.3E-06 48.7 3.3 22 191-212 2-23 (269)
329 3con_A GTPase NRAS; structural 90.9 0.12 4.2E-06 45.6 3.1 23 191-213 22-44 (190)
330 1cr0_A DNA primase/helicase; R 90.9 0.12 4E-06 49.8 3.2 24 190-213 35-58 (296)
331 2nzj_A GTP-binding protein REM 90.9 0.13 4.4E-06 44.6 3.1 24 190-213 4-27 (175)
332 1q3t_A Cytidylate kinase; nucl 90.7 0.13 4.6E-06 47.6 3.3 24 189-212 15-38 (236)
333 1u8z_A RAS-related protein RAL 90.7 0.14 4.7E-06 43.9 3.1 24 191-214 5-28 (168)
334 3qf4_B Uncharacterized ABC tra 90.7 0.23 7.7E-06 53.1 5.4 23 190-212 381-403 (598)
335 2afh_E Nitrogenase iron protei 90.7 0.14 4.8E-06 49.1 3.5 23 190-212 2-24 (289)
336 1z08_A RAS-related protein RAB 90.6 0.17 6E-06 43.5 3.7 24 190-213 6-29 (170)
337 2qm8_A GTPase/ATPase; G protei 90.5 0.24 8.2E-06 48.8 5.0 34 179-212 44-77 (337)
338 1c1y_A RAS-related protein RAP 90.4 0.18 6E-06 43.2 3.6 23 191-213 4-26 (167)
339 3def_A T7I23.11 protein; chlor 90.4 0.3 1E-05 46.1 5.4 40 175-214 21-60 (262)
340 2erx_A GTP-binding protein DI- 90.4 0.14 4.9E-06 44.0 3.0 23 191-213 4-26 (172)
341 1h65_A Chloroplast outer envel 90.4 0.34 1.2E-05 45.9 5.8 41 174-214 23-63 (270)
342 3hjn_A DTMP kinase, thymidylat 90.4 0.27 9.1E-06 44.3 4.8 49 192-242 2-50 (197)
343 3kta_A Chromosome segregation 90.3 0.15 5.2E-06 44.9 3.1 22 191-212 27-48 (182)
344 1ek0_A Protein (GTP-binding pr 90.3 0.16 5.3E-06 43.7 3.1 23 192-214 5-27 (170)
345 3mfy_A V-type ATP synthase alp 90.3 0.37 1.3E-05 50.2 6.2 59 178-241 216-275 (588)
346 3e1s_A Exodeoxyribonuclease V, 90.3 0.57 2E-05 49.6 8.0 102 191-309 205-313 (574)
347 2gj8_A MNME, tRNA modification 90.3 0.15 5E-06 44.6 2.9 23 191-213 5-27 (172)
348 2r44_A Uncharacterized protein 90.3 0.16 5.5E-06 49.6 3.5 37 172-212 32-68 (331)
349 2ocp_A DGK, deoxyguanosine kin 90.2 0.16 5.5E-06 47.2 3.4 24 190-213 2-25 (241)
350 1z0j_A RAB-22, RAS-related pro 90.2 0.16 5.4E-06 43.7 3.1 24 191-214 7-30 (170)
351 2qmh_A HPR kinase/phosphorylas 90.2 0.17 5.8E-06 45.6 3.2 23 190-212 34-56 (205)
352 1kao_A RAP2A; GTP-binding prot 90.2 0.19 6.6E-06 42.8 3.6 23 191-213 4-26 (167)
353 3pqc_A Probable GTP-binding pr 90.2 0.19 6.4E-06 44.4 3.6 26 189-214 22-47 (195)
354 1ky3_A GTP-binding protein YPT 90.1 0.16 5.6E-06 44.2 3.1 25 189-213 7-31 (182)
355 1svi_A GTP-binding protein YSX 90.1 0.18 6.1E-06 44.7 3.4 25 189-213 22-46 (195)
356 3q85_A GTP-binding protein REM 90.0 0.2 6.9E-06 43.1 3.6 22 191-212 3-24 (169)
357 1nrj_B SR-beta, signal recogni 90.0 0.19 6.5E-06 45.5 3.6 25 189-213 11-35 (218)
358 3ihw_A Centg3; RAS, centaurin, 90.0 0.17 5.8E-06 44.8 3.1 25 189-213 19-43 (184)
359 1m7b_A RND3/RHOE small GTP-bin 90.0 0.2 6.8E-06 44.1 3.6 24 190-213 7-30 (184)
360 3oaa_A ATP synthase subunit al 89.9 0.36 1.2E-05 49.6 5.8 102 178-284 151-265 (513)
361 1ewq_A DNA mismatch repair pro 89.9 0.28 9.6E-06 53.7 5.3 51 266-318 646-704 (765)
362 4dsu_A GTPase KRAS, isoform 2B 89.9 0.2 7E-06 43.9 3.6 24 191-214 5-28 (189)
363 1lw7_A Transcriptional regulat 89.9 0.16 5.6E-06 50.5 3.2 23 190-212 170-192 (365)
364 3kkq_A RAS-related protein M-R 89.9 0.21 7.1E-06 43.7 3.6 25 189-213 17-41 (183)
365 3eph_A TRNA isopentenyltransfe 89.9 0.17 5.7E-06 50.9 3.2 22 191-212 3-24 (409)
366 3q72_A GTP-binding protein RAD 89.8 0.16 5.4E-06 43.6 2.8 22 192-213 4-25 (166)
367 1u0j_A DNA replication protein 89.8 0.31 1.1E-05 46.0 4.9 37 176-212 90-126 (267)
368 1wms_A RAB-9, RAB9, RAS-relate 89.8 0.18 6.1E-06 43.8 3.1 25 189-213 6-30 (177)
369 3v9p_A DTMP kinase, thymidylat 89.8 0.24 8.1E-06 45.8 4.0 23 190-212 25-47 (227)
370 3t5g_A GTP-binding protein RHE 89.8 0.21 7.2E-06 43.6 3.6 24 190-213 6-29 (181)
371 1g16_A RAS-related protein SEC 89.7 0.18 6.1E-06 43.3 3.0 23 191-213 4-26 (170)
372 2fn4_A P23, RAS-related protei 89.7 0.3 1E-05 42.3 4.5 25 189-213 8-32 (181)
373 3t1o_A Gliding protein MGLA; G 89.7 0.17 5.7E-06 44.8 2.9 23 190-212 14-36 (198)
374 1r8s_A ADP-ribosylation factor 89.7 0.17 5.8E-06 43.3 2.9 21 193-213 3-23 (164)
375 2cxx_A Probable GTP-binding pr 89.7 0.18 6.2E-06 44.3 3.1 22 192-213 3-24 (190)
376 3c5c_A RAS-like protein 12; GD 89.7 0.18 6.2E-06 44.6 3.1 24 190-213 21-44 (187)
377 1um8_A ATP-dependent CLP prote 89.7 0.15 5.2E-06 50.9 2.8 23 190-212 72-94 (376)
378 1r2q_A RAS-related protein RAB 89.7 0.19 6.5E-06 43.1 3.1 23 191-213 7-29 (170)
379 2ck3_A ATP synthase subunit al 89.6 0.38 1.3E-05 49.6 5.7 106 178-284 151-273 (510)
380 3nbx_X ATPase RAVA; AAA+ ATPas 89.6 0.29 1E-05 50.9 4.9 38 172-213 27-64 (500)
381 3cmu_A Protein RECA, recombina 89.6 0.63 2.2E-05 55.9 8.3 89 189-284 382-472 (2050)
382 2iwr_A Centaurin gamma 1; ANK 89.5 0.16 5.5E-06 44.2 2.6 23 191-213 8-30 (178)
383 1z0f_A RAB14, member RAS oncog 89.5 0.19 6.6E-06 43.5 3.1 26 189-214 14-39 (179)
384 1m2o_B GTP-binding protein SAR 89.5 0.19 6.5E-06 44.7 3.0 23 191-213 24-46 (190)
385 2bme_A RAB4A, RAS-related prot 89.5 0.19 6.6E-06 44.0 3.1 26 189-214 9-34 (186)
386 1g29_1 MALK, maltose transport 89.5 0.18 6.3E-06 50.3 3.2 125 191-317 30-205 (372)
387 1p5z_B DCK, deoxycytidine kina 89.4 0.13 4.4E-06 48.6 1.9 24 189-212 23-46 (263)
388 3tw8_B RAS-related protein RAB 89.4 0.21 7.2E-06 43.4 3.3 25 189-213 8-32 (181)
389 2hxs_A RAB-26, RAS-related pro 89.4 0.2 6.7E-06 43.6 3.0 24 190-213 6-29 (178)
390 1v43_A Sugar-binding transport 89.4 0.19 6.5E-06 50.2 3.2 22 191-212 38-59 (372)
391 3lv8_A DTMP kinase, thymidylat 89.3 0.34 1.1E-05 45.1 4.7 52 190-242 27-78 (236)
392 1f6b_A SAR1; gtpases, N-termin 89.3 0.15 5.3E-06 45.6 2.3 23 191-213 26-48 (198)
393 2y8e_A RAB-protein 6, GH09086P 89.3 0.2 6.9E-06 43.4 3.0 23 191-213 15-37 (179)
394 4tmk_A Protein (thymidylate ki 89.3 0.36 1.2E-05 44.1 4.8 51 191-243 4-55 (213)
395 2a9k_A RAS-related protein RAL 89.3 0.25 8.4E-06 43.2 3.6 25 190-214 18-42 (187)
396 2www_A Methylmalonic aciduria 89.2 0.23 7.8E-06 49.2 3.7 24 189-212 73-96 (349)
397 3cmw_A Protein RECA, recombina 89.2 0.56 1.9E-05 55.6 7.4 89 189-284 382-472 (1706)
398 1upt_A ARL1, ADP-ribosylation 89.2 0.28 9.4E-06 42.2 3.8 24 190-213 7-30 (171)
399 1mh1_A RAC1; GTP-binding, GTPa 89.2 0.25 8.7E-06 43.1 3.6 23 191-213 6-28 (186)
400 1oxx_K GLCV, glucose, ABC tran 89.2 0.15 5E-06 50.6 2.2 125 191-317 32-206 (353)
401 4hlc_A DTMP kinase, thymidylat 89.2 0.27 9.3E-06 44.6 3.9 29 191-221 3-31 (205)
402 2yv5_A YJEQ protein; hydrolase 89.2 0.31 1E-05 47.2 4.5 31 176-211 156-186 (302)
403 3llu_A RAS-related GTP-binding 89.1 0.2 6.9E-06 44.6 2.9 25 189-213 19-43 (196)
404 2oil_A CATX-8, RAS-related pro 89.1 0.21 7.3E-06 44.2 3.1 25 189-213 24-48 (193)
405 3bwd_D RAC-like GTP-binding pr 89.1 0.22 7.4E-06 43.4 3.1 24 190-213 8-31 (182)
406 3bc1_A RAS-related protein RAB 89.1 0.22 7.4E-06 43.8 3.1 25 189-213 10-34 (195)
407 2qnr_A Septin-2, protein NEDD5 89.1 0.17 5.9E-06 48.9 2.6 20 193-212 21-40 (301)
408 2bov_A RAla, RAS-related prote 89.0 0.22 7.4E-06 44.5 3.1 26 189-214 13-38 (206)
409 2obl_A ESCN; ATPase, hydrolase 89.0 0.19 6.6E-06 49.7 2.9 35 178-213 60-94 (347)
410 2efe_B Small GTP-binding prote 89.0 0.22 7.5E-06 43.4 3.1 24 190-213 12-35 (181)
411 3cbq_A GTP-binding protein REM 88.9 0.17 5.8E-06 45.3 2.3 23 189-211 22-44 (195)
412 2r8r_A Sensor protein; KDPD, P 88.9 0.21 7.1E-06 46.0 2.8 107 192-312 8-127 (228)
413 1pui_A ENGB, probable GTP-bind 88.8 0.13 4.4E-06 46.4 1.4 24 190-213 26-49 (210)
414 3ld9_A DTMP kinase, thymidylat 88.8 0.37 1.3E-05 44.3 4.6 24 189-212 20-43 (223)
415 2g6b_A RAS-related protein RAB 88.8 0.24 8.1E-06 43.1 3.1 25 190-214 10-34 (180)
416 2fh5_B SR-beta, signal recogni 88.7 0.27 9.2E-06 44.4 3.6 26 189-214 6-31 (214)
417 2atv_A RERG, RAS-like estrogen 88.7 0.23 8E-06 44.1 3.1 24 190-213 28-51 (196)
418 1zbd_A Rabphilin-3A; G protein 88.7 0.24 8.4E-06 44.2 3.2 25 190-214 8-32 (203)
419 2xau_A PRE-mRNA-splicing facto 88.7 1 3.4E-05 49.6 8.7 34 174-211 97-130 (773)
420 3cf2_A TER ATPase, transitiona 88.7 0.48 1.6E-05 52.1 6.0 71 190-284 511-581 (806)
421 3vkw_A Replicase large subunit 88.7 1.6 5.3E-05 44.4 9.4 26 187-212 158-183 (446)
422 1vg8_A RAS-related protein RAB 88.6 0.28 9.7E-06 43.8 3.6 25 189-213 7-31 (207)
423 2fg5_A RAB-22B, RAS-related pr 88.6 0.24 8.1E-06 44.0 3.0 25 190-214 23-47 (192)
424 2qu8_A Putative nucleolar GTP- 88.6 0.29 1E-05 44.8 3.7 25 189-213 28-52 (228)
425 1gwn_A RHO-related GTP-binding 88.6 0.24 8.1E-06 44.7 3.0 25 189-213 27-51 (205)
426 2cjw_A GTP-binding protein GEM 88.5 0.23 8E-06 44.2 3.0 23 190-212 6-28 (192)
427 3oes_A GTPase rhebl1; small GT 88.5 0.24 8.3E-06 44.3 3.0 26 189-214 23-48 (201)
428 3tkl_A RAS-related protein RAB 88.5 0.4 1.4E-05 42.3 4.5 26 189-214 15-40 (196)
429 2gza_A Type IV secretion syste 88.4 0.19 6.6E-06 49.9 2.5 22 191-212 176-197 (361)
430 1ksh_A ARF-like protein 2; sma 88.4 0.24 8.3E-06 43.5 2.9 26 189-214 17-42 (186)
431 1ega_A Protein (GTP-binding pr 88.4 0.27 9.2E-06 47.5 3.4 25 189-213 7-31 (301)
432 4bas_A ADP-ribosylation factor 88.3 0.28 9.5E-06 43.5 3.3 26 189-214 16-41 (199)
433 2gf9_A RAS-related protein RAB 88.3 0.26 8.9E-06 43.5 3.1 25 190-214 22-46 (189)
434 3reg_A RHO-like small GTPase; 88.3 0.26 8.9E-06 43.7 3.1 26 189-214 22-47 (194)
435 2ew1_A RAS-related protein RAB 88.3 0.25 8.7E-06 44.4 3.1 25 189-213 25-49 (201)
436 2a5j_A RAS-related protein RAB 88.3 0.26 8.9E-06 43.6 3.1 24 190-213 21-44 (191)
437 4dzz_A Plasmid partitioning pr 88.3 0.26 8.7E-06 44.2 3.1 42 191-234 2-44 (206)
438 1zd9_A ADP-ribosylation factor 88.3 0.32 1.1E-05 42.9 3.7 24 190-213 22-45 (188)
439 2h92_A Cytidylate kinase; ross 88.2 0.21 7.2E-06 45.4 2.5 22 191-212 4-25 (219)
440 3clv_A RAB5 protein, putative; 88.1 0.26 8.7E-06 43.7 3.0 25 190-214 7-31 (208)
441 2o52_A RAS-related protein RAB 88.1 0.26 8.8E-06 44.1 3.0 25 189-213 24-48 (200)
442 2p5s_A RAS and EF-hand domain 88.1 0.27 9.2E-06 43.9 3.1 25 189-213 27-51 (199)
443 3dz8_A RAS-related protein RAB 88.1 0.25 8.5E-06 43.7 2.8 24 190-213 23-46 (191)
444 2q3h_A RAS homolog gene family 88.1 0.27 9.1E-06 43.9 3.0 24 190-213 20-43 (201)
445 1zj6_A ADP-ribosylation factor 88.0 0.29 9.8E-06 43.1 3.2 34 177-213 6-39 (187)
446 1x3s_A RAS-related protein RAB 88.0 0.28 9.5E-06 43.3 3.1 24 190-213 15-38 (195)
447 3cr8_A Sulfate adenylyltranfer 88.0 0.23 8E-06 52.3 2.9 23 190-212 369-391 (552)
448 2b6h_A ADP-ribosylation factor 88.0 0.24 8.3E-06 44.0 2.7 24 190-213 29-52 (192)
449 1z06_A RAS-related protein RAB 88.0 0.28 9.7E-06 43.2 3.1 25 189-213 19-43 (189)
450 2gf0_A GTP-binding protein DI- 87.9 0.25 8.6E-06 43.8 2.8 24 190-213 8-31 (199)
451 3lxx_A GTPase IMAP family memb 87.9 0.35 1.2E-05 44.7 3.8 26 189-214 28-53 (239)
452 1g8p_A Magnesium-chelatase 38 87.8 0.18 6E-06 49.6 1.8 22 192-213 47-68 (350)
453 3g5u_A MCG1178, multidrug resi 87.8 1.1 3.7E-05 52.3 8.6 23 190-212 1059-1081(1284)
454 2bcg_Y Protein YP2, GTP-bindin 87.8 0.28 9.7E-06 43.9 3.0 25 189-213 7-31 (206)
455 1u0l_A Probable GTPase ENGC; p 87.7 0.43 1.5E-05 46.1 4.5 34 175-213 159-192 (301)
456 3k53_A Ferrous iron transport 87.7 0.32 1.1E-05 46.1 3.5 24 190-213 3-26 (271)
457 4gzl_A RAS-related C3 botulinu 87.7 0.33 1.1E-05 43.6 3.4 24 190-213 30-53 (204)
458 2h17_A ADP-ribosylation factor 87.7 0.28 9.7E-06 42.9 2.9 24 190-213 21-44 (181)
459 3vr4_A V-type sodium ATPase ca 87.7 0.43 1.5E-05 49.9 4.5 59 178-241 221-280 (600)
460 2fv8_A H6, RHO-related GTP-bin 87.7 0.29 1E-05 44.0 3.1 24 190-213 25-48 (207)
461 2npi_A Protein CLP1; CLP1-PCF1 87.6 0.22 7.5E-06 51.3 2.4 22 191-212 139-160 (460)
462 2j1l_A RHO-related GTP-binding 87.6 0.28 9.7E-06 44.4 2.9 24 190-213 34-57 (214)
463 2orw_A Thymidine kinase; TMTK, 87.6 0.29 1E-05 43.5 3.0 22 191-212 4-25 (184)
464 2g3y_A GTP-binding protein GEM 87.6 0.29 1E-05 44.6 3.0 24 189-212 36-59 (211)
465 2il1_A RAB12; G-protein, GDP, 87.5 0.25 8.6E-06 43.8 2.5 24 190-213 26-49 (192)
466 3fdi_A Uncharacterized protein 87.5 0.29 1E-05 44.2 2.9 23 190-212 6-28 (201)
467 4dkx_A RAS-related protein RAB 87.4 0.31 1.1E-05 44.6 3.1 22 192-213 15-36 (216)
468 3kjh_A CO dehydrogenase/acetyl 87.4 0.48 1.7E-05 43.7 4.5 20 193-212 3-22 (254)
469 2qag_B Septin-6, protein NEDD5 87.4 0.27 9.2E-06 49.9 2.9 22 192-213 44-65 (427)
470 2hup_A RAS-related protein RAB 87.4 0.31 1.1E-05 43.6 3.0 25 189-213 28-52 (201)
471 2x77_A ADP-ribosylation factor 87.3 0.42 1.4E-05 42.0 3.9 25 189-213 21-45 (189)
472 2axn_A 6-phosphofructo-2-kinas 87.3 0.33 1.1E-05 50.8 3.6 24 189-212 34-57 (520)
473 2gco_A H9, RHO-related GTP-bin 87.2 0.33 1.1E-05 43.4 3.1 24 190-213 25-48 (201)
474 3iev_A GTP-binding protein ERA 87.2 0.39 1.3E-05 46.5 3.8 26 188-213 8-33 (308)
475 2atx_A Small GTP binding prote 87.2 0.31 1.1E-05 43.1 2.9 24 190-213 18-41 (194)
476 1moz_A ARL1, ADP-ribosylation 87.2 0.27 9.2E-06 42.9 2.4 25 189-213 17-41 (183)
477 3gmt_A Adenylate kinase; ssgci 87.2 0.3 1E-05 45.1 2.8 23 190-212 8-30 (230)
478 2j0v_A RAC-like GTP-binding pr 87.2 0.32 1.1E-05 43.7 3.0 24 190-213 9-32 (212)
479 3cph_A RAS-related protein SEC 87.2 0.33 1.1E-05 43.6 3.1 24 190-213 20-43 (213)
480 3q3j_B RHO-related GTP-binding 87.1 0.39 1.4E-05 43.5 3.6 25 190-214 27-51 (214)
481 2rcn_A Probable GTPase ENGC; Y 87.1 0.33 1.1E-05 48.1 3.2 23 191-213 216-238 (358)
482 4f4c_A Multidrug resistance pr 87.0 1.5 5.2E-05 51.2 9.3 24 190-213 444-467 (1321)
483 2dpy_A FLII, flagellum-specifi 87.0 0.3 1E-05 49.9 2.9 34 179-213 147-180 (438)
484 1yqt_A RNAse L inhibitor; ATP- 86.9 0.32 1.1E-05 51.1 3.2 126 191-316 313-466 (538)
485 3g5u_A MCG1178, multidrug resi 86.8 1.8 6.2E-05 50.4 9.8 23 190-212 416-438 (1284)
486 4dhe_A Probable GTP-binding pr 86.8 0.28 9.7E-06 44.5 2.5 26 189-214 28-53 (223)
487 3ch4_B Pmkase, phosphomevalona 86.8 0.44 1.5E-05 43.0 3.6 24 189-212 10-33 (202)
488 3ozx_A RNAse L inhibitor; ATP 86.7 0.3 1E-05 51.3 2.9 125 191-317 295-451 (538)
489 2fu5_C RAS-related protein RAB 86.6 0.22 7.4E-06 43.6 1.5 25 189-213 7-31 (183)
490 1yqt_A RNAse L inhibitor; ATP- 86.6 0.34 1.2E-05 50.9 3.2 76 239-317 140-223 (538)
491 3iqw_A Tail-anchored protein t 86.5 0.68 2.3E-05 45.4 5.1 24 189-212 15-38 (334)
492 3fkq_A NTRC-like two-domain pr 86.5 0.46 1.6E-05 47.4 4.0 25 188-212 141-166 (373)
493 3k9g_A PF-32 protein; ssgcid, 86.4 0.38 1.3E-05 45.3 3.2 40 189-231 26-66 (267)
494 3b1v_A Ferrous iron uptake tra 86.4 0.52 1.8E-05 44.8 4.2 24 190-213 3-26 (272)
495 3t34_A Dynamin-related protein 86.4 4.4 0.00015 39.9 11.1 25 189-213 33-57 (360)
496 2h57_A ADP-ribosylation factor 86.4 0.26 9E-06 43.5 2.0 25 190-214 21-45 (190)
497 1g41_A Heat shock protein HSLU 86.4 0.33 1.1E-05 49.5 2.8 23 190-212 50-72 (444)
498 3cwq_A Para family chromosome 86.3 0.39 1.3E-05 43.5 3.1 43 192-237 2-45 (209)
499 3euj_A Chromosome partition pr 86.3 0.37 1.3E-05 49.7 3.2 22 191-212 30-51 (483)
500 2fz4_A DNA repair protein RAD2 86.3 2.1 7.3E-05 39.4 8.3 105 193-308 111-225 (237)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=4.7e-45 Score=392.20 Aligned_cols=270 Identities=18% Similarity=0.226 Sum_probs=218.5
Q ss_pred hhhhHHHHHHHHhcC-CCCceEEEEEcCCCccHHHHHHHHHc--CCCcccccceEEEEEcCCCC--CHHHHHHHHHhhcC
Q 010117 172 FERGREELFDLLIEG-PPRLSVVAILDSSGFEMTAFAADAFN--NNHVKFYFDCHAWVRVSIAY--DFGKILDDIINPVM 246 (518)
Q Consensus 172 r~~~~~~l~~~L~~~-~~~~~vi~I~G~gGvGKTtLA~~v~~--d~~~~~~F~~~~wv~vs~~~--~~~~i~~~i~~~l~ 246 (518)
|+.++++|.++|..+ +...++|+|+||||+||||||+++|+ |.+++.+|++++||++++.+ ++..+++.|+.+++
T Consensus 133 R~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~ 212 (549)
T 2a5y_B 133 REYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLK 212 (549)
T ss_dssp CHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHh
Confidence 999999999999765 45689999999999999999999998 78999999999999999985 89999999999998
Q ss_pred CCCC---CCccccCCHHHHHHHHHHHhccC-cEEEEEcCCCCChHHHHHHhhhcCCCCCCcEEEEEecchhhhhhc----
Q 010117 247 PPSR---VSVIIGEDYQLKKSILQDYLTAK-KYFIVLDDVFDDSEIWHDLVEFLPDNQNGSRVLITLLWFELQKGE---- 318 (518)
Q Consensus 247 ~~~~---~~~~~~~~~~~~~~~l~~~L~~k-r~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~va~~~---- 318 (518)
.... .......+.+++...+++.|.+| ||||||||||+ .+.+ .+.. .+||+||||||++.|+..+
T Consensus 213 ~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~-~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~~~ 285 (549)
T 2a5y_B 213 SEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQ-EETI-RWAQ-----ELRLRCLVTTRDVEISNAASQTC 285 (549)
T ss_dssp TTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECC-HHHH-HHHH-----HTTCEEEEEESBGGGGGGCCSCE
T ss_pred cCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCC-chhh-cccc-----cCCCEEEEEcCCHHHHHHcCCCC
Confidence 7532 11123446778899999999996 99999999999 6654 1111 1699999999998887654
Q ss_pred -----------------------------------------cCCCc-hhhhcccccCCChHHHHHHHHHhCCCCCcCCCC
Q 010117 319 -----------------------------------------KIQPD-SVLVGGPMIRIKHEAWQFFILHYGNTPLENYIG 356 (518)
Q Consensus 319 -----------------------------------------~~~Pl-i~~vg~~L~~~~~~~W~~~~~~l~~~~~~~~~~ 356 (518)
+|+|+ |+++|+.|+.+. |+.+ +.+.+ .+... .
T Consensus 286 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~---w~~~-~~l~~-~l~~~-~ 359 (549)
T 2a5y_B 286 EFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT---FEKM-AQLNN-KLESR-G 359 (549)
T ss_dssp EEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS---HHHH-HHHHH-HHHHH-C
T ss_pred eEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch---HHHH-HHhHH-Hhhcc-c
Confidence 78888 899999998773 4433 23322 21111 2
Q ss_pred CCchHHhhhhhcccCCccHhHHHHHh-----------hhhcCCCCcccchhhHHHHhhhC--CCCCC---CCChHHHHHH
Q 010117 357 QKAIPTILSQIHSVWELPFHLKVCCI-----------YLCVFPPSIEISTRQLCQLWIAE--GLIPG---NYNSERMVEE 420 (518)
Q Consensus 357 ~~~i~~~l~~~~sy~~Lp~~lk~cfl-----------y~s~FP~~~~i~~~~Li~~Wiae--g~i~~---~~~~e~~~~~ 420 (518)
...+.+++. +||++||+++|.||+ |||+||+++.|+ +++|+|+ ||+.. +.+++++++
T Consensus 360 ~~~i~~~l~--~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~- 432 (549)
T 2a5y_B 360 LVGVECITP--YSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD- 432 (549)
T ss_dssp SSTTCCCSS--SSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-
T ss_pred HHHHHHHHh--cccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-
Confidence 357889999 999999999999999 999999999999 8999999 99987 456788888
Q ss_pred HHHHHHHcCceeeeeecCCCceeEEEeCHHHHHHHHHHhhhcCe
Q 010117 421 YLKELSNSGFIQVGKIRAGGTIKACYVPSYVYAALRWVAEKMGF 464 (518)
Q Consensus 421 ~~~~Lv~rsll~~~~~~~~g~~~~~~mHdlv~d~a~~~s~~e~~ 464 (518)
||++|++||||++...+ ...+|+|||+||+||++++.++++
T Consensus 433 ~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 433 RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 99999999999987643 446899999999999998877654
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.2e-36 Score=351.35 Aligned_cols=268 Identities=19% Similarity=0.254 Sum_probs=217.8
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCc-cccc-ceEEEEEcCCCCC--HHHHHHHHHhhcCC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHV-KFYF-DCHAWVRVSIAYD--FGKILDDIINPVMP 247 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~-~~~F-~~~~wv~vs~~~~--~~~i~~~i~~~l~~ 247 (518)
|++++++|.++|...+...++|+|+||||+||||||+++|++.++ ..+| +.++||++++..+ ....+..++..+..
T Consensus 129 R~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~ 208 (1249)
T 3sfz_A 129 RKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQ 208 (1249)
T ss_dssp CHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhh
Confidence 999999999999877667899999999999999999999997433 4545 6677999998644 44557778877776
Q ss_pred CCCCCccccCCHHHHHHHHHHHhccC--cEEEEEcCCCCChHHHHHHhhhcCCCCCCcEEEEEecchhhhhhc-------
Q 010117 248 PSRVSVIIGEDYQLKKSILQDYLTAK--KYFIVLDDVFDDSEIWHDLVEFLPDNQNGSRVLITLLWFELQKGE------- 318 (518)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~l~~~L~~k--r~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~va~~~------- 318 (518)
..........+.+.+...++..+.++ ||||||||||+ ...|..+ .+||+||||||++.|+..+
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~-~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~~~~~ 280 (1249)
T 3sfz_A 209 EESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWD-PWVLKAF-------DNQCQILLTTRDKSVTDSVMGPKHVV 280 (1249)
T ss_dssp TCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCC-HHHHTTT-------CSSCEEEEEESSTTTTTTCCSCBCCE
T ss_pred hcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCC-HHHHHhh-------cCCCEEEEEcCCHHHHHhhcCCceEE
Confidence 54322224567889999999999887 99999999999 7766543 4689999999999887432
Q ss_pred -------------------------------------cCCCc-hhhhcccccCCChHHHHHHHHHhCCCC---CcC--CC
Q 010117 319 -------------------------------------KIQPD-SVLVGGPMIRIKHEAWQFFILHYGNTP---LEN--YI 355 (518)
Q Consensus 319 -------------------------------------~~~Pl-i~~vg~~L~~~~~~~W~~~~~~l~~~~---~~~--~~ 355 (518)
+|+|+ |+.+|++|+.+.. .|..+++.+.... +.. ..
T Consensus 281 ~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~-~~~~~l~~l~~~~~~~~~~~~~~ 359 (1249)
T 3sfz_A 281 PVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPN-RWAYYLRQLQNKQFKRIRKSSSY 359 (1249)
T ss_dssp ECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSS-CHHHHHHHHHSCCCCCSSCTTCT
T ss_pred EecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChh-HHHHHHHHHhhhhhhhccccccc
Confidence 78888 8999999987663 6888887774311 111 11
Q ss_pred CCCchHHhhhhhcccCCccHhHHHHHhhhhcCCCCcccchhhHHHHhhhCCCCCCCCChHHHHHHHHHHHHHcCceeeee
Q 010117 356 GQKAIPTILSQIHSVWELPFHLKVCCIYLCVFPPSIEISTRQLCQLWIAEGLIPGNYNSERMVEEYLKELSNSGFIQVGK 435 (518)
Q Consensus 356 ~~~~i~~~l~~~~sy~~Lp~~lk~cfly~s~FP~~~~i~~~~Li~~Wiaeg~i~~~~~~e~~~~~~~~~Lv~rsll~~~~ 435 (518)
....+..++. +||+.||+++|.||+|||+||+++.|+++.++++|.++ ++.++++|++|+++||++...
T Consensus 360 ~~~~~~~~l~--~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~---------~~~~~~~l~~L~~~sl~~~~~ 428 (1249)
T 3sfz_A 360 DYEALDEAMS--ISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE---------TEEVEDILQEFVNKSLLFCNR 428 (1249)
T ss_dssp THHHHHHHHH--HHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC---------HHHHHHHHHHHHHTTSCEEEE
T ss_pred chHHHHHHHH--HHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC---------HHHHHHHHHHHHhccceEEec
Confidence 2246999999 99999999999999999999999999999999999665 467899999999999999754
Q ss_pred ecCCCceeEEEeCHHHHHHHHHHhhhc
Q 010117 436 IRAGGTIKACYVPSYVYAALRWVAEKM 462 (518)
Q Consensus 436 ~~~~g~~~~~~mHdlv~d~a~~~s~~e 462 (518)
+|+..+|+|||+||+||+.++.++
T Consensus 429 ---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 429 ---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp ---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred ---CCCceEEEecHHHHHHHHhhhhHH
Confidence 455578999999999999998765
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=2.4e-36 Score=331.36 Aligned_cols=247 Identities=17% Similarity=0.167 Sum_probs=201.4
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccce-EEEEEcCCCCCHHHHHHHHHhhcCCCC-
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDC-HAWVRVSIAYDFGKILDDIINPVMPPS- 249 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~-~~wv~vs~~~~~~~i~~~i~~~l~~~~- 249 (518)
|+.++++|.++|...+ ..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..|+..++...
T Consensus 133 Re~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~~ 211 (1221)
T 1vt4_I 133 RLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211 (1221)
T ss_dssp CHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHCS
T ss_pred cHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcCc
Confidence 9999999999998643 4789999999999999999999998889999987 999999999999888888877543211
Q ss_pred --CCC----ccccCCHHHHHHHHHHHh---ccCcEEEEEcCCCCChHHHHHHhhhcCCCCCCcEEEEEecchhhhhh---
Q 010117 250 --RVS----VIIGEDYQLKKSILQDYL---TAKKYFIVLDDVFDDSEIWHDLVEFLPDNQNGSRVLITLLWFELQKG--- 317 (518)
Q Consensus 250 --~~~----~~~~~~~~~~~~~l~~~L---~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~va~~--- 317 (518)
... .....+.+.+...+++.| .+||+||||||||+ .+.|+.+. +||+||||||++.++..
T Consensus 212 ~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd-~eqLe~f~-------pGSRILVTTRd~~Va~~l~g 283 (1221)
T 1vt4_I 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-AKAWNAFN-------LSCKILLTTRFKQVTDFLSA 283 (1221)
T ss_dssp SSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC-HHHHHHHH-------SSCCEEEECSCSHHHHHHHH
T ss_pred ccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh-HHHHHhhC-------CCeEEEEeccChHHHHhcCC
Confidence 100 001123456677788766 67999999999999 88887752 59999999999887631
Q ss_pred ---------------------------------------ccCCCc-hhhhcccccCCChH--HHHHHHHHhCCCCCcCCC
Q 010117 318 ---------------------------------------EKIQPD-SVLVGGPMIRIKHE--AWQFFILHYGNTPLENYI 355 (518)
Q Consensus 318 ---------------------------------------~~~~Pl-i~~vg~~L~~~~~~--~W~~~~~~l~~~~~~~~~ 355 (518)
|+|+|+ |+.+|+.|+.+... .|...
T Consensus 284 ~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~eeL~~eICgGLPLALkLaGs~Lr~k~~s~eeW~~~------------- 350 (1221)
T 1vt4_I 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV------------- 350 (1221)
T ss_dssp HSSCEEEECSSSSCCCHHHHHHHHHHHHCCCTTTHHHHHCCCCHHHHHHHHHHHHHSCSSHHHHHHC-------------
T ss_pred CeEEEecCccccCCcCHHHHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHhcC-------------
Confidence 167788 88899999887432 78642
Q ss_pred CCCchHHhhhhhcccCCccHhH-HHHHhhhhcCCCCcccchhhHHHHhhhCCCCCCCCChHHHHHHHHHHHHHcCceeee
Q 010117 356 GQKAIPTILSQIHSVWELPFHL-KVCCIYLCVFPPSIEISTRQLCQLWIAEGLIPGNYNSERMVEEYLKELSNSGFIQVG 434 (518)
Q Consensus 356 ~~~~i~~~l~~~~sy~~Lp~~l-k~cfly~s~FP~~~~i~~~~Li~~Wiaeg~i~~~~~~e~~~~~~~~~Lv~rsll~~~ 434 (518)
....+..+|. +||+.||++. |+||+|||+||+++.|+++.++.+|+++| ++.++.+|++|+++|||+..
T Consensus 351 ~~~~I~aaLe--lSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG--------eedAe~~L~eLvdRSLLq~d 420 (1221)
T 1vt4_I 351 NCDKLTTIIE--SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI--------KSDVMVVVNKLHKYSLVEKQ 420 (1221)
T ss_dssp SCHHHHHHHH--HHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC--------SHHHHHHHHHHHTSSSSSBC
T ss_pred ChhHHHHHHH--HHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC--------HHHHHHHHHHHHhhCCEEEe
Confidence 1247999999 9999999999 99999999999999999999999999987 34688999999999999974
Q ss_pred eecCCCceeEEEeCHHHHHHH
Q 010117 435 KIRAGGTIKACYVPSYVYAAL 455 (518)
Q Consensus 435 ~~~~~g~~~~~~mHdlv~d~a 455 (518)
. ...+|+|||++++++
T Consensus 421 ~-----~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 421 P-----KESTISIPSIYLELK 436 (1221)
T ss_dssp S-----SSSEEBCCCHHHHHH
T ss_pred C-----CCCEEEehHHHHHHh
Confidence 2 225799999999965
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=3.4e-32 Score=295.32 Aligned_cols=264 Identities=19% Similarity=0.262 Sum_probs=204.8
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCc-cccc-ceEEEEEcCCCCCHHHHHHHH---HhhcC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHV-KFYF-DCHAWVRVSIAYDFGKILDDI---INPVM 246 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~-~~~F-~~~~wv~vs~~~~~~~i~~~i---~~~l~ 246 (518)
|+.++++|.++|.......++|+|+||||+||||||..++++.++ ..+| +.++|++++.. +...++..+ ...++
T Consensus 129 R~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l~~~l~ 207 (591)
T 1z6t_A 129 RKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLCTRLD 207 (591)
T ss_dssp CHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHHHHHhc
Confidence 999999999999865556899999999999999999999997655 7889 57999999876 344444443 44454
Q ss_pred CCCCCCccccCCHHHHHHHHHHHhcc--CcEEEEEcCCCCChHHHHHHhhhcCCCCCCcEEEEEecchhhhhhc------
Q 010117 247 PPSRVSVIIGEDYQLKKSILQDYLTA--KKYFIVLDDVFDDSEIWHDLVEFLPDNQNGSRVLITLLWFELQKGE------ 318 (518)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~l~~~L~~--kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~va~~~------ 318 (518)
...........+.+.+...+...+.+ +++||||||||+ ...+.. + .+||+||||||+..++..+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~-~~~l~~----l---~~~~~ilvTsR~~~~~~~~~~~~~~ 279 (591)
T 1z6t_A 208 QDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWD-SWVLKA----F---DSQCQILLTTRDKSVTDSVMGPKYV 279 (591)
T ss_dssp SSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECC-HHHHHT----T---CSSCEEEEEESCGGGGTTCCSCEEE
T ss_pred cccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCC-HHHHHH----h---cCCCeEEEECCCcHHHHhcCCCceE
Confidence 32111112455778888899999987 799999999999 665543 3 4589999999998776542
Q ss_pred --------------------------------------cCCCc-hhhhcccccCCChHHHHHHHHHhCCCC---CcC--C
Q 010117 319 --------------------------------------KIQPD-SVLVGGPMIRIKHEAWQFFILHYGNTP---LEN--Y 354 (518)
Q Consensus 319 --------------------------------------~~~Pl-i~~vg~~L~~~~~~~W~~~~~~l~~~~---~~~--~ 354 (518)
+|+|+ +..+|+.++.+.. .|..+++.+.... +.. .
T Consensus 280 v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~-~w~~~l~~l~~~~~~~~~~~~~ 358 (591)
T 1z6t_A 280 VPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPN-RWEYYLKQLQNKQFKRIRKSSS 358 (591)
T ss_dssp EECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTT-CHHHHHHHHHSCCCCCSSCCCS
T ss_pred eecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCch-hHHHHHHHHHHhHHHHhhhccc
Confidence 67777 8888888876542 6888887775411 111 1
Q ss_pred CCCCchHHhhhhhcccCCccHhHHHHHhhhhcCCCCcccchhhHHHHhhhCCCCCCCCChHHHHHHHHHHHHHcCceeee
Q 010117 355 IGQKAIPTILSQIHSVWELPFHLKVCCIYLCVFPPSIEISTRQLCQLWIAEGLIPGNYNSERMVEEYLKELSNSGFIQVG 434 (518)
Q Consensus 355 ~~~~~i~~~l~~~~sy~~Lp~~lk~cfly~s~FP~~~~i~~~~Li~~Wiaeg~i~~~~~~e~~~~~~~~~Lv~rsll~~~ 434 (518)
.....+..++. .||+.||++.|.||++||+||+++.|+.+.|+.+|.++ .+.+..++++|+++|||+..
T Consensus 359 ~~~~~l~~~l~--~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~---------~~~~~~~l~~L~~~~Ll~~~ 427 (591)
T 1z6t_A 359 YDYEALDEAMS--ISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME---------TEEVEDILQEFVNKSLLFCD 427 (591)
T ss_dssp SCCHHHHHHHH--HHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC---------HHHHHHHHHHHHHTTSSEEE
T ss_pred cchHHHHHHHH--HHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC---------HHHHHHHHHHHHhCcCeEEe
Confidence 22347899999 99999999999999999999999999999999999654 34678999999999999865
Q ss_pred eecCCCceeEEEeCHHHHHHHHHHh
Q 010117 435 KIRAGGTIKACYVPSYVYAALRWVA 459 (518)
Q Consensus 435 ~~~~~g~~~~~~mHdlv~d~a~~~s 459 (518)
. +|...+|+||+++|+|++...
T Consensus 428 ~---~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 428 R---NGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp E---ETTEEEEECCHHHHHHHHHHT
T ss_pred c---CCCccEEEEcHHHHHHHHhhh
Confidence 4 334568999999999999883
No 5
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.43 E-value=3.4e-13 Score=112.63 Aligned_cols=83 Identities=13% Similarity=0.149 Sum_probs=63.4
Q ss_pred hhcchHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHhhcccchhhccchh-hcCChhHHHHHHHHHHHhhhhH
Q 010117 20 NSTNLTPLFQDLLTESEIITTGNYEGDLSLHLIQLFREHFDKARISLPFWQLLDSEE-NVNRPDILEILEDINYFVQESE 98 (518)
Q Consensus 20 ~~~~l~~~l~~ll~~~~~~~~g~~~~~~~l~~i~~~~~~~e~l~~~l~~l~~~d~e~-~~~~~~v~~Wl~~lr~~ayd~e 98 (518)
++.++++||.+++.+|+.++.|+++++ +.++++++.++ ++|...+... +..+++++.|+++||+++||+|
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i------~~Lk~eL~~m~---a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~E 72 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGVKKNI------EDLGKELESMN---AALIKIGEVPREQLDSQDKLWADEVRELSYVIE 72 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH---HHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHH------HHHHHHHHHHH---HHHHHHHHhccccCCHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999998874 44444444433 3333333221 3578999999999999999999
Q ss_pred HHHHHHHHHHhcc
Q 010117 99 EAIDAFFINIMQQ 111 (518)
Q Consensus 99 D~lD~~~~~~~~~ 111 (518)
||||+|.++....
T Consensus 73 D~iD~f~~~~~~~ 85 (115)
T 3qfl_A 73 DVVDKFLVQVDGI 85 (115)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccc
Confidence 9999999988654
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.24 E-value=2.8e-11 Score=124.51 Aligned_cols=137 Identities=18% Similarity=0.108 Sum_probs=92.8
Q ss_pred hhhhHHHHHHHH-hc---C-CCCceEEEE--EcCCCccHHHHHHHHHcCCCcccc-----cc-eEEEEEcCCCCCHHHHH
Q 010117 172 FERGREELFDLL-IE---G-PPRLSVVAI--LDSSGFEMTAFAADAFNNNHVKFY-----FD-CHAWVRVSIAYDFGKIL 238 (518)
Q Consensus 172 r~~~~~~l~~~L-~~---~-~~~~~vi~I--~G~gGvGKTtLA~~v~~d~~~~~~-----F~-~~~wv~vs~~~~~~~i~ 238 (518)
|+.+.+.|.+.| .. + ......+.| +|++|+||||||+.+++. .... |. ..+|+......+...++
T Consensus 27 R~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (412)
T 1w5s_A 27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKR--VSEAAAKEGLTVKQAYVNAFNAPNLYTIL 104 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHH--HHHHHHHTTCCEEEEEEEGGGCCSHHHHH
T ss_pred hHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHH--HHHHHhccCCceeEEEEECCCCCCHHHHH
Confidence 899999998888 42 2 023445666 999999999999999983 3332 22 35788877778899999
Q ss_pred HHHHhhcCCCCCCCccccCCHHHHHHHHHHHhc--cCcEEEEEcCCCC--C-----hHHHHHHhhhcCC-C--C--CCcE
Q 010117 239 DDIINPVMPPSRVSVIIGEDYQLKKSILQDYLT--AKKYFIVLDDVFD--D-----SEIWHDLVEFLPD-N--Q--NGSR 304 (518)
Q Consensus 239 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdvw~--~-----~~~~~~l~~~l~~-~--~--~gsk 304 (518)
..++.+++..... ...+...+...+.+.+. +++++|||||++. . ...+..+...+.. . + ....
T Consensus 105 ~~l~~~l~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 105 SLIVRQTGYPIQV---RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHTCCCCC---TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHhCCCCCC---CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 9999998765321 23345666777777775 6799999999987 1 2444444333321 1 2 3455
Q ss_pred EEEEecchh
Q 010117 305 VLITLLWFE 313 (518)
Q Consensus 305 IivTTR~~~ 313 (518)
+|+||+...
T Consensus 182 lI~~~~~~~ 190 (412)
T 1w5s_A 182 FLLVASDVR 190 (412)
T ss_dssp EEEEEEETH
T ss_pred EEEEecccc
Confidence 888887654
No 7
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.01 E-value=5.5e-09 Score=104.58 Aligned_cols=130 Identities=9% Similarity=0.039 Sum_probs=86.6
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCC------CHHHHHHHHHhhc
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAY------DFGKILDDIINPV 245 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~------~~~~i~~~i~~~l 245 (518)
|+.+.+.|.+++..+ +++.|+|++|+|||||++.+.+.. . .+|+.+.... +...++..+...+
T Consensus 17 R~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 85 (350)
T 2qen_A 17 REEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELIKELQSTI 85 (350)
T ss_dssp CHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHHHHHHHHH
Confidence 999999999988764 689999999999999999999842 1 6777765432 5666777666655
Q ss_pred CCC--------------CCCCccccCCHHHHHHHHHHHhcc-CcEEEEEcCCCC-C-------hHHHHHHhhhcCCCCCC
Q 010117 246 MPP--------------SRVSVIIGEDYQLKKSILQDYLTA-KKYFIVLDDVFD-D-------SEIWHDLVEFLPDNQNG 302 (518)
Q Consensus 246 ~~~--------------~~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVLDdvw~-~-------~~~~~~l~~~l~~~~~g 302 (518)
... .........+..++...+.+.... ++++|||||++. + ...+..+...... ..+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~-~~~ 164 (350)
T 2qen_A 86 SPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS-LPN 164 (350)
T ss_dssp CSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH-CTT
T ss_pred HHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh-cCC
Confidence 420 000000124566677777776653 499999999976 1 1234444433222 247
Q ss_pred cEEEEEecchh
Q 010117 303 SRVLITLLWFE 313 (518)
Q Consensus 303 skIivTTR~~~ 313 (518)
.++|+|++...
T Consensus 165 ~~~il~g~~~~ 175 (350)
T 2qen_A 165 LKIILTGSEVG 175 (350)
T ss_dssp EEEEEEESSHH
T ss_pred eEEEEECCcHH
Confidence 88999988754
No 8
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.96 E-value=7.7e-08 Score=97.73 Aligned_cols=138 Identities=17% Similarity=0.132 Sum_probs=98.3
Q ss_pred hhhhHHHHHHHHhc----CCCCceEEEEEcCCCccHHHHHHHHHcCCCccccc-ceEEEEEcCCCCCHHHHHHHHHhhcC
Q 010117 172 FERGREELFDLLIE----GPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYF-DCHAWVRVSIAYDFGKILDDIINPVM 246 (518)
Q Consensus 172 r~~~~~~l~~~L~~----~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F-~~~~wv~vs~~~~~~~i~~~i~~~l~ 246 (518)
|+.+++.+.+++.. .....+.+.|+|++|+|||||++.+.+. ..... ...+|+..+...+...++..++..++
T Consensus 22 r~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~ 99 (389)
T 1fnn_A 22 REQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEIARSLN 99 (389)
T ss_dssp CHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHHHHHhC
Confidence 88888888888765 2223448999999999999999999983 33321 24677887788888899999999887
Q ss_pred CCCCCCccccCCHHHHHHHHHHHhc--cCcEEEEEcCCCC-ChHHHHHHhhhcCCCC----CCcEEEEEecchhh
Q 010117 247 PPSRVSVIIGEDYQLKKSILQDYLT--AKKYFIVLDDVFD-DSEIWHDLVEFLPDNQ----NGSRVLITLLWFEL 314 (518)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~----~gskIivTTR~~~v 314 (518)
..... ...+...+...+...+. +++.+||||++.. +......+...+.... .+..||+||+....
T Consensus 100 ~~~~~---~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 100 IPFPR---RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp CCCCS---SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred ccCCC---CCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 54321 23355666777777764 5688999999977 4666667766554311 36778888876643
No 9
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.80 E-value=8.3e-08 Score=96.08 Aligned_cols=129 Identities=11% Similarity=0.077 Sum_probs=77.5
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCC-----CCHHHHHHHHHhhcC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIA-----YDFGKILDDIINPVM 246 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~-----~~~~~i~~~i~~~l~ 246 (518)
|+.+.+.|.+ +.. +++.|+|++|+|||||++.+.+. ... ..+|+..... .+...++..+.+.+.
T Consensus 18 R~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 86 (357)
T 2fna_A 18 REKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYKDFLLELQKEIN 86 (357)
T ss_dssp CHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHHHHHHHHHHHHH
Confidence 9999999998 643 59999999999999999999984 322 2578887643 344444444433321
Q ss_pred --------------C------CCCCCcc-----ccCCHHHHHHHHHHHhccCcEEEEEcCCCC-C----hHHHHHHhhhc
Q 010117 247 --------------P------PSRVSVI-----IGEDYQLKKSILQDYLTAKKYFIVLDDVFD-D----SEIWHDLVEFL 296 (518)
Q Consensus 247 --------------~------~~~~~~~-----~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~-~----~~~~~~l~~~l 296 (518)
. ....... .......+...+.+.-. ++++|||||++. + ...+..+....
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~~~~ 165 (357)
T 2fna_A 87 KLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALAYAY 165 (357)
T ss_dssp HHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHHHHH
T ss_pred HHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHHHHH
Confidence 0 0000000 12344555555554433 499999999966 1 12223332222
Q ss_pred CCCCCCcEEEEEecchh
Q 010117 297 PDNQNGSRVLITLLWFE 313 (518)
Q Consensus 297 ~~~~~gskIivTTR~~~ 313 (518)
....+.++|+|++...
T Consensus 166 -~~~~~~~~i~~g~~~~ 181 (357)
T 2fna_A 166 -DNLKRIKFIMSGSEMG 181 (357)
T ss_dssp -HHCTTEEEEEEESSHH
T ss_pred -HcCCCeEEEEEcCchH
Confidence 1123678999999764
No 10
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.69 E-value=4.3e-08 Score=99.54 Aligned_cols=135 Identities=13% Similarity=-0.044 Sum_probs=91.6
Q ss_pred hhhhHHHHHHHHhc--CCCCceEEEEEcCCCccHHHHHHHHHcCCCcccc--------cceEEEEEcCCCC-CHHHHHHH
Q 010117 172 FERGREELFDLLIE--GPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFY--------FDCHAWVRVSIAY-DFGKILDD 240 (518)
Q Consensus 172 r~~~~~~l~~~L~~--~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~--------F~~~~wv~vs~~~-~~~~i~~~ 240 (518)
|+.+++.+.++|.. .....+.+.|+|++|+||||||+.+++ ..... ....+|++.+... +...++..
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 102 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFN--EIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSS 102 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHH--HHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHH
Confidence 88888888877754 223456899999999999999999998 33222 2346788877777 88888899
Q ss_pred HHhhcCCCCCCCccccCCHHHHHHHHHHHhccCcEEEEEcCCCCChHH---HHH-HhhhcCCCCCCcEEEEEecch
Q 010117 241 IINPVMPPSRVSVIIGEDYQLKKSILQDYLTAKKYFIVLDDVFDDSEI---WHD-LVEFLPDNQNGSRVLITLLWF 312 (518)
Q Consensus 241 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~~~~~---~~~-l~~~l~~~~~gskIivTTR~~ 312 (518)
++..+.+.... ....+...+...+.+.+..++.+|||||++. ... .+. +...+... .+..||+||+..
T Consensus 103 l~~~l~~~~~~--~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~-l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~ 174 (384)
T 2qby_B 103 LAGKLTGFSVP--KHGINLGEYIDKIKNGTRNIRAIIYLDEVDT-LVKRRGGDIVLYQLLRSD-ANISVIMISNDI 174 (384)
T ss_dssp HHHHHHCSCCC--SSSSCTHHHHHHHHHHHSSSCEEEEEETTHH-HHHSTTSHHHHHHHHTSS-SCEEEEEECSST
T ss_pred HHHHhcCCCCC--CCCCCHHHHHHHHHHHhccCCCEEEEECHHH-hccCCCCceeHHHHhcCC-cceEEEEEECCC
Confidence 88887322110 1233446677788888887777999999976 221 122 22222111 578899999875
No 11
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.62 E-value=1.3e-07 Score=95.81 Aligned_cols=135 Identities=15% Similarity=0.002 Sum_probs=92.4
Q ss_pred hhhhHHHHHHHHhcC--CCCceEEEEEcCCCccHHHHHHHHHcCCCcccc------cceEEEEEcCCCCCHHHHHHHHHh
Q 010117 172 FERGREELFDLLIEG--PPRLSVVAILDSSGFEMTAFAADAFNNNHVKFY------FDCHAWVRVSIAYDFGKILDDIIN 243 (518)
Q Consensus 172 r~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~------F~~~~wv~vs~~~~~~~i~~~i~~ 243 (518)
|+.+++.+.+++... ......+.|+|++|+||||||+.+++ ..... --..+|++.....+...++..++.
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 101 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLR--RLEARASSLGVLVKPIYVNARHRETPYRVASAIAE 101 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHH--HHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHH
Confidence 899999999988542 33467899999999999999999998 33222 123678888888888999999999
Q ss_pred hcCCCCCCCccccCCHHHHHHHHHHHhc--cCcEEEEEcCCCCChH----HHHHH---hhhcCCC--CCCcEEEEEecch
Q 010117 244 PVMPPSRVSVIIGEDYQLKKSILQDYLT--AKKYFIVLDDVFDDSE----IWHDL---VEFLPDN--QNGSRVLITLLWF 312 (518)
Q Consensus 244 ~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdvw~~~~----~~~~l---~~~l~~~--~~gskIivTTR~~ 312 (518)
.++..... ...+..++...+.+.+. +++.+||||++.. .. ..+.+ ....... ..+..+|.||+..
T Consensus 102 ~l~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~-l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 102 AVGVRVPF---TGLSVGEVYERLVKRLSRLRGIYIIVLDEIDF-LPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHSCCCCS---SCCCHHHHHHHHHHHHTTSCSEEEEEEETTTH-HHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HhCCCCCC---CCCCHHHHHHHHHHHHhccCCeEEEEEccHhh-hcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 98765331 33345666777777773 4689999999987 22 22222 2222111 3456788888765
No 12
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.60 E-value=7.9e-08 Score=97.34 Aligned_cols=138 Identities=14% Similarity=0.090 Sum_probs=93.9
Q ss_pred hhhhHHHHHHHHhcC--CCCceEEEEEcCCCccHHHHHHHHHcCCCccccc---ceEEEEEcCCCCCHHHHHHHHHhhcC
Q 010117 172 FERGREELFDLLIEG--PPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYF---DCHAWVRVSIAYDFGKILDDIINPVM 246 (518)
Q Consensus 172 r~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F---~~~~wv~vs~~~~~~~i~~~i~~~l~ 246 (518)
|+.+++.+.+++... ......+.|+|++|+||||||+.+++ .....| ...+|+..+...+...++..++..++
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~ 102 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLD 102 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTS
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 899999999888752 33456899999999999999999998 443332 24678887777788888999988886
Q ss_pred CCCCCCccccCCHHHHHHHHHHHhc--cCcEEEEEcCCCC-C----hHHHHHHhhhcCC-CCCCcEEEEEecchhh
Q 010117 247 PPSRVSVIIGEDYQLKKSILQDYLT--AKKYFIVLDDVFD-D----SEIWHDLVEFLPD-NQNGSRVLITLLWFEL 314 (518)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdvw~-~----~~~~~~l~~~l~~-~~~gskIivTTR~~~v 314 (518)
..... ...+..++...+.+.+. +++.+||||+++. . ...+..+...+.. ...+..+|+||+....
T Consensus 103 ~~~~~---~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~ 175 (386)
T 2qby_A 103 VKVPF---TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKF 175 (386)
T ss_dssp CCCCS---SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGG
T ss_pred CCCCC---CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCCh
Confidence 54321 23345666667777665 3589999999976 1 2334444433321 2335667888886643
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.50 E-value=3.5e-07 Score=84.71 Aligned_cols=118 Identities=11% Similarity=-0.004 Sum_probs=71.8
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccc-cc-eEEEEEcCCCCCHHHHHHHHHhhcCCCC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFY-FD-CHAWVRVSIAYDFGKILDDIINPVMPPS 249 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~-F~-~~~wv~vs~~~~~~~i~~~i~~~l~~~~ 249 (518)
++..++.+.+++..+. ...+.|+|++|+|||+||+.+++ ..... +. ..+.+..+.......+...+........
T Consensus 22 ~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (226)
T 2chg_A 22 QDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALAR--DLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAP 97 (226)
T ss_dssp CHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHH--HHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSCC
T ss_pred cHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHH--HHhccccccceEEeccccccChHHHHHHHHHHhcccC
Confidence 7788888888887653 33489999999999999999987 33222 21 1333443333332222211111111000
Q ss_pred CCCccccCCHHHHHHHHHHHhccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEEecch
Q 010117 250 RVSVIIGEDYQLKKSILQDYLTAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLITLLWF 312 (518)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~ 312 (518)
.-.+++.+||+||++. .....+.+...+.....++++|+||+..
T Consensus 98 -------------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~ 142 (226)
T 2chg_A 98 -------------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (226)
T ss_dssp -------------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred -------------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 0125788999999987 4556666666655445577889998764
No 14
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.42 E-value=1.2e-06 Score=82.11 Aligned_cols=133 Identities=11% Similarity=-0.001 Sum_probs=72.4
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRV 251 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~ 251 (518)
++..++.+..++..+. ....+.|+|++|+||||||+.+++. ....+... ......... ...+..........
T Consensus 28 ~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~--~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~ 99 (250)
T 1njg_A 28 QEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKG--LNCETGIT----ATPCGVCDN-CREIEQGRFVDLIE 99 (250)
T ss_dssp CHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHH--HHCTTCSC----SSCCSCSHH-HHHHHTTCCSSEEE
T ss_pred cHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH--hcCCCCCC----CCCCcccHH-HHHHhccCCcceEE
Confidence 8888889988887653 2358899999999999999999873 22211000 000000000 01111100000000
Q ss_pred Cc-cccCCHHHHHHHHHHH----hccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEEecch
Q 010117 252 SV-IIGEDYQLKKSILQDY----LTAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLITLLWF 312 (518)
Q Consensus 252 ~~-~~~~~~~~~~~~l~~~----L~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~ 312 (518)
.. ........+...+... ..+++.+||+||++. +...++.+...+.....+..+|+||+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~ 166 (250)
T 1njg_A 100 IDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 166 (250)
T ss_dssp EETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCG
T ss_pred ecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCCh
Confidence 00 0011112222222211 134689999999976 4677888877776555678899998764
No 15
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.20 E-value=2.7e-06 Score=83.85 Aligned_cols=112 Identities=11% Similarity=0.071 Sum_probs=70.8
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccc-cc-eEEEEEcCCCCCHHHHHHHHHhhcCCCC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFY-FD-CHAWVRVSIAYDFGKILDDIINPVMPPS 249 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~-F~-~~~wv~vs~~~~~~~i~~~i~~~l~~~~ 249 (518)
++..++.+.+++..+. .+.+.|+|++|+||||+|+.+++ .+... +. ..+++..+.....
T Consensus 26 ~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~--~l~~~~~~~~~~~~~~~~~~~~--------------- 86 (323)
T 1sxj_B 26 NKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAH--ELLGRSYADGVLELNASDDRGI--------------- 86 (323)
T ss_dssp CTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHH--HHHGGGHHHHEEEECTTSCCSH---------------
T ss_pred CHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHH--HhcCCcccCCEEEecCccccCh---------------
Confidence 7888888888887653 23389999999999999999987 33221 11 2334433332222
Q ss_pred CCCccccCCHHHHHHHHHHHh-------ccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEEecch
Q 010117 250 RVSVIIGEDYQLKKSILQDYL-------TAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLITLLWF 312 (518)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~L-------~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~ 312 (518)
..+...+.... .+++.+||+||++. ....++.+...+.....++.+|+||+..
T Consensus 87 ----------~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~ 147 (323)
T 1sxj_B 87 ----------DVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQS 147 (323)
T ss_dssp ----------HHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCG
T ss_pred ----------HHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCCh
Confidence 22222222221 34689999999987 4556666666555444577888888653
No 16
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.14 E-value=1.7e-05 Score=77.93 Aligned_cols=107 Identities=7% Similarity=0.047 Sum_probs=73.7
Q ss_pred hhhhHHHHHHHHhcC--CCCceEEEEEcCCCccHHHHHHHHHcCCCccc--------ccceEEEEEcCCCCCHHHHHHHH
Q 010117 172 FERGREELFDLLIEG--PPRLSVVAILDSSGFEMTAFAADAFNNNHVKF--------YFDCHAWVRVSIAYDFGKILDDI 241 (518)
Q Consensus 172 r~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~--------~F~~~~wv~vs~~~~~~~i~~~i 241 (518)
|+++.+.|...|... ....+.+-|+|++|+|||++++.|.+. ... .| ..+.|+...-.+...++..|
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~--L~~~~~~~~~~~~-~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDE--LITSSARKELPIF-DYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHH--HHHTTTTTSSCCE-EEEEEETTCCC--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhhhccCCce-EEEEEeccccCCHHHHHHHH
Confidence 999999998887653 345678899999999999999999984 321 12 24566666767888999999
Q ss_pred HhhcCCCCCCCccccCCHHHHHHHHHHH--hccCcEEEEEcCCCC
Q 010117 242 INPVMPPSRVSVIIGEDYQLKKSILQDY--LTAKKYFIVLDDVFD 284 (518)
Q Consensus 242 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~--L~~kr~LlVLDdvw~ 284 (518)
++++.+... ......+.+...+... -.++.++++||++..
T Consensus 102 ~~~L~g~~~---~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~ 143 (318)
T 3te6_A 102 WFAISKENL---CGDISLEALNFYITNVPKAKKRKTLILIQNPEN 143 (318)
T ss_dssp HHHHSCCC-----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSS
T ss_pred HHHhcCCCC---CchHHHHHHHHHHHHhhhccCCceEEEEecHHH
Confidence 999976532 1222334444444432 245689999999976
No 17
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.04 E-value=6.4e-06 Score=81.39 Aligned_cols=41 Identities=20% Similarity=0.164 Sum_probs=29.4
Q ss_pred hhhhHHHHHHHHhc---CCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIE---GPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~---~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
++..++.+..++.. .......+.|+|+.|+|||+||+.+++
T Consensus 17 ~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 17 QERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 55555566555542 122345788999999999999999988
No 18
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.94 E-value=9.2e-06 Score=80.12 Aligned_cols=112 Identities=12% Similarity=0.081 Sum_probs=69.2
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccc-c-ceEEEEEcCCCCCHHHHHHHHHhhcCCCC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFY-F-DCHAWVRVSIAYDFGKILDDIINPVMPPS 249 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~-F-~~~~wv~vs~~~~~~~i~~~i~~~l~~~~ 249 (518)
++..++.+.+++..+. .+.+.|+|++|+||||+|+.+++. +... + ...+.+..+......
T Consensus 30 ~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~-------------- 91 (327)
T 1iqp_A 30 QEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNASDERGIN-------------- 91 (327)
T ss_dssp CHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETTCHHHHH--------------
T ss_pred CHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeeccccCchH--------------
Confidence 7778888888887663 334899999999999999999883 3221 1 112333322211100
Q ss_pred CCCccccCCHHHHHHHHHHH-----h-ccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEEecch
Q 010117 250 RVSVIIGEDYQLKKSILQDY-----L-TAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLITLLWF 312 (518)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~-----L-~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~ 312 (518)
.+...+.+. + .+++.+||+||++. ....++.+...+.....++++|+||...
T Consensus 92 -----------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~ 150 (327)
T 1iqp_A 92 -----------VIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYS 150 (327)
T ss_dssp -----------TTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred -----------HHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCc
Confidence 011111111 1 25688999999987 4566777776665445578888888664
No 19
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.84 E-value=1.8e-05 Score=71.07 Aligned_cols=40 Identities=10% Similarity=0.090 Sum_probs=33.6
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
|++..+.+.+.+..+ ....+.|+|++|+|||+||+.+++.
T Consensus 27 ~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 27 RDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHH
Confidence 788899999988764 3456789999999999999999873
No 20
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.75 E-value=4.9e-05 Score=68.18 Aligned_cols=119 Identities=13% Similarity=0.037 Sum_probs=63.2
Q ss_pred hhhhHHHHHHHHhcCC-CCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCC
Q 010117 172 FERGREELFDLLIEGP-PRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSR 250 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~-~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~ 250 (518)
.....+.+.+++..-. ..-..+.|+|+.|+||||||+.+++.......+. ++++ +..++...+.........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~------~~~~~~~~~~~~~~~~~~ 91 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFF------DTKDLIFRLKHLMDEGKD 91 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEE------EHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEE------EHHHHHHHHHHHhcCchH
Confidence 4555566666554421 2346899999999999999999987321011111 2333 344555554443322211
Q ss_pred CCccccCCHHHHHHHHHHHhccCcEEEEEcCCCC-ChHHH--HHHhhhcCC-CCCCcEEEEEecc
Q 010117 251 VSVIIGEDYQLKKSILQDYLTAKKYFIVLDDVFD-DSEIW--HDLVEFLPD-NQNGSRVLITLLW 311 (518)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~-~~~~~--~~l~~~l~~-~~~gskIivTTR~ 311 (518)
. ... +.+. +.-+|||||++. ..+.| ..+...+.. ...|..||+||..
T Consensus 92 -------~--~~~----~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 92 -------T--KFL----KTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp -------S--HHH----HHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred -------H--HHH----HHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 1 111 1222 456899999984 12222 222222221 1246788998874
No 21
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.59 E-value=0.00017 Score=65.84 Aligned_cols=91 Identities=14% Similarity=0.056 Sum_probs=53.7
Q ss_pred hhhhHHHHHHHHhcCCCC--ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCC
Q 010117 172 FERGREELFDLLIEGPPR--LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPS 249 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~--~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~ 249 (518)
+....+.+.+++...... ...+.|+|++|+||||||+.+++ ........+++++. ..+...+.......
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~~- 104 (202)
T 2w58_A 34 RIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIVYV------PELFRELKHSLQDQ- 104 (202)
T ss_dssp HHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEEEH------HHHHHHHHHC---C-
T ss_pred HHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEh------HHHHHHHHHHhccc-
Confidence 455566667776654222 26789999999999999999998 44333344566654 34455554433211
Q ss_pred CCCccccCCHHHHHHHHHHHhccCcEEEEEcCCCC
Q 010117 250 RVSVIIGEDYQLKKSILQDYLTAKKYFIVLDDVFD 284 (518)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~ 284 (518)
........ +... -+|||||++.
T Consensus 105 --------~~~~~~~~----~~~~-~~lilDei~~ 126 (202)
T 2w58_A 105 --------TMNEKLDY----IKKV-PVLMLDDLGA 126 (202)
T ss_dssp --------CCHHHHHH----HHHS-SEEEEEEECC
T ss_pred --------hHHHHHHH----hcCC-CEEEEcCCCC
Confidence 11222222 2222 3999999965
No 22
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.52 E-value=7.6e-05 Score=73.18 Aligned_cols=115 Identities=11% Similarity=0.016 Sum_probs=67.9
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCc-ccccc-eEEEEEcCCCCCHHHHHHHHHhhcCCCC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHV-KFYFD-CHAWVRVSIAYDFGKILDDIINPVMPPS 249 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~-~~~F~-~~~wv~vs~~~~~~~i~~~i~~~l~~~~ 249 (518)
++..++.+.+++..+. .+.+.++|+.|+|||++|+.+.+. + ...+. ..+.+..+....
T Consensus 22 ~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~~~---------------- 81 (319)
T 2chq_A 22 QDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMNASDERG---------------- 81 (319)
T ss_dssp CHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHH--HHTTCHHHHCEEEETTSTTC----------------
T ss_pred CHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHH--hcCCcccCCeEEEeCccccC----------------
Confidence 6677777777776543 334899999999999999999873 2 11111 122333332111
Q ss_pred CCCccccCCHHHHHHHHHHH--h-ccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEEecch
Q 010117 250 RVSVIIGEDYQLKKSILQDY--L-TAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLITLLWF 312 (518)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~--L-~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~ 312 (518)
..........+... + .+++.++|+|++.. .....+.+...+.....++++|+||...
T Consensus 82 ------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~ 142 (319)
T 2chq_A 82 ------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (319)
T ss_dssp ------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCG
T ss_pred ------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 00111111111111 1 25688999999976 4566677777776555677888887654
No 23
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.50 E-value=0.00013 Score=62.96 Aligned_cols=89 Identities=13% Similarity=-0.027 Sum_probs=51.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCc-ccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHH
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHV-KFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDY 269 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~-~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 269 (518)
.-|-|+|..|+|||++|+.+++...- ...| + +..+.-.+. .... ..+..
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~---v-~~~~~~~~~----------------------~~~~---~~~~~- 74 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFGRNAQGEF---V-YRELTPDNA----------------------PQLN---DFIAL- 74 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSSTTTTSCC---E-EEECCTTTS----------------------SCHH---HHHHH-
T ss_pred CCEEEECCCCCCHHHHHHHHHHhCCccCCCE---E-EECCCCCcc----------------------hhhh---cHHHH-
Confidence 34689999999999999999984211 2222 2 443332211 0111 11111
Q ss_pred hccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEEecc
Q 010117 270 LTAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLITLLW 311 (518)
Q Consensus 270 L~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~ 311 (518)
.+.-.|+||++.. .......+...+.......+||.||..
T Consensus 75 --a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 75 --AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp --HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred --cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 1334789999987 455556666655444445678887764
No 24
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.50 E-value=0.00011 Score=65.49 Aligned_cols=40 Identities=13% Similarity=0.075 Sum_probs=33.3
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
++...+.+.+.+... ....+.|+|+.|+||||||+.+.+.
T Consensus 27 ~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 27 RDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHHH
Confidence 788888998888764 2456789999999999999999873
No 25
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.47 E-value=0.00059 Score=68.42 Aligned_cols=133 Identities=13% Similarity=-0.011 Sum_probs=69.5
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCC--
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPS-- 249 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~-- 249 (518)
++..++.+.+.+..+. ....+.|+|+.|+||||+|+.+.+.......+. ..++........+........
T Consensus 21 ~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 92 (373)
T 1jr3_A 21 QEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCREIEQGRFVDLIE 92 (373)
T ss_dssp CHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-------SSCCSSSHHHHHHHTSCCSSCEE
T ss_pred cHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCcccHHHHHHhccCCCceEE
Confidence 7788888888887653 234688999999999999999987321111110 000000001111111000000
Q ss_pred --CCCccccCCHHHHHHHHHHH-hccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEEecch
Q 010117 250 --RVSVIIGEDYQLKKSILQDY-LTAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLITLLWF 312 (518)
Q Consensus 250 --~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~ 312 (518)
........+...+...+... ..+++.+||+||+.. ....++.+...+.....+..+|++|...
T Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 159 (373)
T 1jr3_A 93 IDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 159 (373)
T ss_dssp EETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCG
T ss_pred ecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCCh
Confidence 00000112223322222111 135678999999976 4666777776665444566777777643
No 26
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.46 E-value=0.00015 Score=74.96 Aligned_cols=114 Identities=13% Similarity=0.147 Sum_probs=63.8
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccce--EEEEEcCCCCCHHHHHHHHHhhcCCCCCCCc
Q 010117 176 REELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDC--HAWVRVSIAYDFGKILDDIINPVMPPSRVSV 253 (518)
Q Consensus 176 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~--~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~ 253 (518)
...+......... ...+.|+|++|+||||||+.+++ .....|.. .++++. ..+..++...+...
T Consensus 117 ~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~------~~~~~~~~~~~~~~----- 182 (440)
T 2z4s_A 117 YHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDLVDSMKEG----- 182 (440)
T ss_dssp HHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEH------HHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeH------HHHHHHHHHHHHcc-----
Confidence 3444444444332 67799999999999999999998 44444322 344433 23344444333221
Q ss_pred cccCCHHHHHHHHHHHhccCcEEEEEcCCCC-Ch--HHHHHHhhhcCC-CCCCcEEEEEecc
Q 010117 254 IIGEDYQLKKSILQDYLTAKKYFIVLDDVFD-DS--EIWHDLVEFLPD-NQNGSRVLITLLW 311 (518)
Q Consensus 254 ~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~-~~--~~~~~l~~~l~~-~~~gskIivTTR~ 311 (518)
.. ..+...+..+.-+|+|||+.. .. ..-+.+...+.. ...|..||+||..
T Consensus 183 ----~~----~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 183 ----KL----NEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp ----CH----HHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred ----cH----HHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 11 123333443567999999975 11 233334333321 1346789998876
No 27
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.42 E-value=0.00022 Score=68.90 Aligned_cols=42 Identities=12% Similarity=0.099 Sum_probs=30.4
Q ss_pred hhhhHHHHHHHHhcC-----------CCCceEEEEEcCCCccHHHHHHHHHcC
Q 010117 172 FERGREELFDLLIEG-----------PPRLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 172 r~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.+..++.|.+.+... -....-+.|+|++|+|||+||+.+++.
T Consensus 22 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 22 LEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 566666666555321 123456899999999999999999983
No 28
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.35 E-value=0.00039 Score=67.92 Aligned_cols=104 Identities=15% Similarity=0.114 Sum_probs=55.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHH
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQD 268 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 268 (518)
....+.|+|++|+|||+||+.+.+.-.........-++.++.. .+.... .......+...+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~------------~l~~~~-----~g~~~~~~~~~~~~ 128 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD------------DLVGQY-----IGHTAPKTKEVLKR 128 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG------------GTCCSS-----TTCHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH------------Hhhhhc-----ccccHHHHHHHHHh
Confidence 3457899999999999999977763111111111123333311 111111 11111222222222
Q ss_pred HhccCcEEEEEcCCCC----------ChHHHHHHhhhcCCCCCCcEEEEEecch
Q 010117 269 YLTAKKYFIVLDDVFD----------DSEIWHDLVEFLPDNQNGSRVLITLLWF 312 (518)
Q Consensus 269 ~L~~kr~LlVLDdvw~----------~~~~~~~l~~~l~~~~~gskIivTTR~~ 312 (518)
. +..+|++|++.. .......+...+.....+..||.||...
T Consensus 129 ~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~ 179 (309)
T 3syl_A 129 A---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYAD 179 (309)
T ss_dssp H---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHH
T ss_pred c---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChH
Confidence 2 345999999972 1555566666665555567788888654
No 29
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.25 E-value=0.00021 Score=61.54 Aligned_cols=22 Identities=18% Similarity=0.137 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 010117 192 VVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~d 213 (518)
-|-|+|..|+|||++|+.+++.
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCT
T ss_pred cEEEECCCCccHHHHHHHHHHh
Confidence 4779999999999999999884
No 30
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.24 E-value=0.001 Score=63.02 Aligned_cols=72 Identities=11% Similarity=0.056 Sum_probs=41.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHH
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQD 268 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 268 (518)
..+-+.|+|++|+|||++|+.+++ .....| +.+..+.-.+ .. .......+...+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~--~~~~~~---~~~~~~~~~~--------------~~-----~~~~~~~~~~~~~~ 93 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT--EAQVPF---LAMAGAEFVE--------------VI-----GGLGAARVRSLFKE 93 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH--HHTCCE---EEEETTTTSS--------------SS-----TTHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH--HhCCCE---EEechHHHHh--------------hc-----cChhHHHHHHHHHH
Confidence 345688999999999999999998 333222 3333332111 00 11112223333444
Q ss_pred HhccCcEEEEEcCCCC
Q 010117 269 YLTAKKYFIVLDDVFD 284 (518)
Q Consensus 269 ~L~~kr~LlVLDdvw~ 284 (518)
.......+|++|++..
T Consensus 94 a~~~~~~vl~iDeid~ 109 (262)
T 2qz4_A 94 ARARAPCIVYIDEIDA 109 (262)
T ss_dssp HHHTCSEEEEEECC--
T ss_pred HHhcCCeEEEEeCcch
Confidence 4445679999999975
No 31
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.22 E-value=0.0012 Score=63.22 Aligned_cols=35 Identities=20% Similarity=0.090 Sum_probs=27.0
Q ss_pred HHHHHhcC-CCCceEEEEEcCCCccHHHHHHHHHcC
Q 010117 179 LFDLLIEG-PPRLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 179 l~~~L~~~-~~~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
+.+.+... .....-+.|+|+.|+|||+||+.+.+.
T Consensus 52 l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 52 LVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp HHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45555432 345678899999999999999999983
No 32
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.19 E-value=0.00013 Score=68.11 Aligned_cols=54 Identities=7% Similarity=-0.039 Sum_probs=36.2
Q ss_pred hhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCC
Q 010117 173 ERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSI 230 (518)
Q Consensus 173 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~ 230 (518)
+...+.+..++..+ ....+.|+|++|+||||||+.+++ ..........|+..+.
T Consensus 37 ~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 37 DELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACA--RANELERRSFYIPLGI 90 (242)
T ss_dssp HHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEGGG
T ss_pred HHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEHHH
Confidence 34455555555543 356789999999999999999987 3333333456666543
No 33
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.19 E-value=0.0013 Score=64.79 Aligned_cols=110 Identities=16% Similarity=0.186 Sum_probs=66.9
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRV 251 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~ 251 (518)
.+..++.+.+++..+. ...++.+.|+.|+|||++|+.+.+. ... ..+.++.+.. ..
T Consensus 31 ~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~--l~~---~~~~i~~~~~-~~----------------- 86 (324)
T 3u61_B 31 PAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHD--VNA---DMMFVNGSDC-KI----------------- 86 (324)
T ss_dssp CHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHH--TTE---EEEEEETTTC-CH-----------------
T ss_pred cHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHH--hCC---CEEEEccccc-CH-----------------
Confidence 5667778888887653 3467888899999999999999883 321 2334443331 11
Q ss_pred CccccCCHHHHHHHHHHHh-----ccCcEEEEEcCCCC-C-hHHHHHHhhhcCCCCCCcEEEEEecchh
Q 010117 252 SVIIGEDYQLKKSILQDYL-----TAKKYFIVLDDVFD-D-SEIWHDLVEFLPDNQNGSRVLITLLWFE 313 (518)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdvw~-~-~~~~~~l~~~l~~~~~gskIivTTR~~~ 313 (518)
..+...+.+.. .+++-+|++|++.. . ....+.+...+.....+.++|+||....
T Consensus 87 --------~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 87 --------DFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp --------HHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred --------HHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 12222222222 23678999999987 3 3455555554433234567888876543
No 34
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.17 E-value=0.0002 Score=62.26 Aligned_cols=24 Identities=4% Similarity=-0.002 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
-..+.|+|..|+|||||++.+++.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999883
No 35
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.15 E-value=0.00046 Score=68.03 Aligned_cols=114 Identities=11% Similarity=0.038 Sum_probs=59.1
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccc
Q 010117 176 REELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVII 255 (518)
Q Consensus 176 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~ 255 (518)
...+...+..+......+.|+|+.|+||||||+.+++. ....-...++++. ..+...+...+...
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~------~~~~~~~~~~~~~~------- 87 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSA------DDFAQAMVEHLKKG------- 87 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEH------HHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEH------HHHHHHHHHHHHcC-------
Confidence 33445544443334567899999999999999999983 3211112344433 23333333322111
Q ss_pred cCCHHHHHHHHHHHhccCcEEEEEcCCCC-Ch--HHHHHHhhhcCC-CCCCcEEEEEecc
Q 010117 256 GEDYQLKKSILQDYLTAKKYFIVLDDVFD-DS--EIWHDLVEFLPD-NQNGSRVLITLLW 311 (518)
Q Consensus 256 ~~~~~~~~~~l~~~L~~kr~LlVLDdvw~-~~--~~~~~l~~~l~~-~~~gskIivTTR~ 311 (518)
.... +...+ .+.-+|++||+.. .. .....+...+.. ...|..||+||..
T Consensus 88 --~~~~----~~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 88 --TINE----FRNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 140 (324)
T ss_dssp --CHHH----HHHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred --cHHH----HHHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 1111 22222 2366999999966 11 223333333221 1235678888764
No 36
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.14 E-value=0.0035 Score=61.99 Aligned_cols=117 Identities=9% Similarity=-0.044 Sum_probs=66.7
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCccc--------------------ccceEEEEEcCCC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKF--------------------YFDCHAWVRVSIA 231 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~--------------------~F~~~~wv~vs~~ 231 (518)
.++..+.+.+.+..+. -...+-++|+.|+||||+|+.+.+.-.-.. |++ ..++....
T Consensus 7 ~~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~- 83 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEK- 83 (334)
T ss_dssp GHHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCT-
T ss_pred hHHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccc-
Confidence 3455666777766553 345788999999999999998876311000 111 12221110
Q ss_pred CCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHH----hccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEE
Q 010117 232 YDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDY----LTAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVL 306 (518)
Q Consensus 232 ~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIi 306 (518)
.. .....+++...+... ..+++-++|+|++.. .....+.+...+.....++.+|
T Consensus 84 -----------------~~----~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~I 142 (334)
T 1a5t_A 84 -----------------GK----NTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFF 142 (334)
T ss_dssp -----------------TC----SSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEE
T ss_pred -----------------cC----CCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEE
Confidence 00 112233332222221 125678999999987 4566777777776555567777
Q ss_pred EEecch
Q 010117 307 ITLLWF 312 (518)
Q Consensus 307 vTTR~~ 312 (518)
++|.+.
T Consensus 143 l~t~~~ 148 (334)
T 1a5t_A 143 LATREP 148 (334)
T ss_dssp EEESCG
T ss_pred EEeCCh
Confidence 777654
No 37
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.11 E-value=0.0018 Score=59.52 Aligned_cols=89 Identities=8% Similarity=-0.016 Sum_probs=54.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC--------CccccCCHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRV--------SVIIGEDYQL 261 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~--------~~~~~~~~~~ 261 (518)
-.++.|+|.+|+|||||+..+.. ..-..++|++....++...+.. +.+..+..... ......+..+
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 46899999999999999999887 1123578888776666655543 33333221000 0001112233
Q ss_pred HHHHHHHHhccCcEEEEEcCCCC
Q 010117 262 KKSILQDYLTAKKYFIVLDDVFD 284 (518)
Q Consensus 262 ~~~~l~~~L~~kr~LlVLDdvw~ 284 (518)
....++..+..+.-+||+|.+-.
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcHH
Confidence 44555555544577999999865
No 38
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.10 E-value=0.00073 Score=67.15 Aligned_cols=127 Identities=10% Similarity=0.026 Sum_probs=66.8
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCccc--ccc-eEEEEEcCCCCCHHHHHHHHHhhcCCC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKF--YFD-CHAWVRVSIAYDFGKILDDIINPVMPP 248 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~--~F~-~~~wv~vs~~~~~~~i~~~i~~~l~~~ 248 (518)
++..++.+..++..+. ...+.|+|+.|+||||+|+.+.+. +.. .+. ....+..+.......+ .+.+......
T Consensus 42 ~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~--l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 116 (353)
T 1sxj_D 42 QDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKE--LYGPDLMKSRILELNASDERGISIV-REKVKNFARL 116 (353)
T ss_dssp CCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHH--HHHHHHHTTSEEEECSSSCCCHHHH-TTHHHHHHHS
T ss_pred CHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHH--hCCCcccccceEEEccccccchHHH-HHHHHHHhhh
Confidence 6777888888887653 223889999999999999999873 221 121 1223333332222222 1111111100
Q ss_pred CCCCccccCCHHHHHHHHHHHhccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEEecc
Q 010117 249 SRVSVIIGEDYQLKKSILQDYLTAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLITLLW 311 (518)
Q Consensus 249 ~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~ 311 (518)
... ..... .....-.++.-+|++|++.. .....+.+...+.......++|++|..
T Consensus 117 ~~~---~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~ 172 (353)
T 1sxj_D 117 TVS---KPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNY 172 (353)
T ss_dssp CCC---CCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred ccc---ccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCc
Confidence 000 00000 00111123567999999876 355556666555443445677777754
No 39
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.09 E-value=0.0055 Score=61.19 Aligned_cols=38 Identities=21% Similarity=0.189 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcC
Q 010117 176 REELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 176 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
...+.+.+..+....+.+.|+|++|+|||+||+.+.+.
T Consensus 56 l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 56 AGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp HHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 33466666665434468999999999999999999984
No 40
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.09 E-value=0.0014 Score=65.30 Aligned_cols=39 Identities=13% Similarity=0.006 Sum_probs=28.6
Q ss_pred hhhhHHHHHHHH-hcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLL-IEGPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L-~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+...+.+.+++ ..+. ...+.|+|+.|+||||+|+.+.+
T Consensus 19 ~~~~~~~l~~~~~~~~~--~~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 19 NEELTNFLKSLSDQPRD--LPHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CHHHHHHHHTTTTCTTC--CCCEEEECSTTSSHHHHHHTHHH
T ss_pred CHHHHHHHHHHHhhCCC--CCeEEEECCCCCCHHHHHHHHHH
Confidence 555666666666 3332 22389999999999999998876
No 41
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.06 E-value=0.0015 Score=64.31 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=29.8
Q ss_pred hhhhHHHHHHHHh----------cCCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLI----------EGPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~----------~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+..++.|.+.+. ......+-|.++|++|+|||+||+.+.+
T Consensus 23 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 23 LEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 5556666665552 1122346789999999999999999998
No 42
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.00 E-value=0.0043 Score=60.57 Aligned_cols=115 Identities=5% Similarity=-0.055 Sum_probs=68.4
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCC-CcccccceEEEEEcCC-CCCHHHHHHHHHhhcCCCCCCC
Q 010117 175 GREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNN-HVKFYFDCHAWVRVSI-AYDFGKILDDIINPVMPPSRVS 252 (518)
Q Consensus 175 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~-~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~~~~ 252 (518)
..+.|.+.+..+. ....-++|+.|+||||+|..+.+.. .....+....++..+. ...+.. .+++++.+....
T Consensus 5 ~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~~~~~p--- 78 (305)
T 2gno_A 5 QLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDFLNYSP--- 78 (305)
T ss_dssp HHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHHHTSCC---
T ss_pred HHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHHHhhcc---
Confidence 3455666666554 6789999999999999999987630 1111122234444332 222222 223333332211
Q ss_pred ccccCCHHHHHHHHHHHhccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEEecch
Q 010117 253 VIIGEDYQLKKSILQDYLTAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLITLLWF 312 (518)
Q Consensus 253 ~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~ 312 (518)
..+++-++|+|++.. .....+.+...+......+.+|++|.+.
T Consensus 79 -----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~ 122 (305)
T 2gno_A 79 -----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRW 122 (305)
T ss_dssp -----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCG
T ss_pred -----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECCh
Confidence 124567899999977 5677788877776555577777777543
No 43
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.94 E-value=0.0071 Score=59.47 Aligned_cols=24 Identities=8% Similarity=0.111 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.+-|.++|+.|+|||+||+.+++.
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 467899999999999999999983
No 44
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.88 E-value=0.0068 Score=58.97 Aligned_cols=72 Identities=14% Similarity=0.104 Sum_probs=43.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHH
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQD 268 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 268 (518)
..+.|.|+|+.|+|||+||+.+++ .....| +.+ +..++..... +.. ...+...+..
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~--~~~~~~-----i~v----~~~~l~~~~~---g~~----------~~~~~~~f~~ 103 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIAN--ECQANF-----ISI----KGPELLTMWF---GES----------EANVREIFDK 103 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHH--HTTCEE-----EEE----CHHHHHHHHH---TTC----------TTHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHH--HhCCCE-----EEE----EhHHHHhhhc---Cch----------HHHHHHHHHH
Confidence 356789999999999999999998 333322 222 2233333222 111 1123333444
Q ss_pred HhccCcEEEEEcCCCC
Q 010117 269 YLTAKKYFIVLDDVFD 284 (518)
Q Consensus 269 ~L~~kr~LlVLDdvw~ 284 (518)
.......+|++|++..
T Consensus 104 a~~~~p~il~iDEid~ 119 (301)
T 3cf0_A 104 ARQAAPCVLFFDELDS 119 (301)
T ss_dssp HHHTCSEEEEECSTTH
T ss_pred HHhcCCeEEEEEChHH
Confidence 4445789999999964
No 45
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.87 E-value=0.0011 Score=64.63 Aligned_cols=69 Identities=10% Similarity=0.078 Sum_probs=47.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEc--CCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRV--SIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQ 267 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~v--s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 267 (518)
-+++.|+|++|+||||||.++... .-..++|+++ ....+. ...+.+.....+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~--------------------~~~~le~~l~~i~ 177 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG--------------------YNTDFNVFVDDIA 177 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT--------------------CBCCHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh--------------------hhcCHHHHHHHHH
Confidence 356789999999999999999873 1223456666 332110 1135566777777
Q ss_pred HHhccCcEEEEEcCCCC
Q 010117 268 DYLTAKKYFIVLDDVFD 284 (518)
Q Consensus 268 ~~L~~kr~LlVLDdvw~ 284 (518)
+.+...+ +||+|++..
T Consensus 178 ~~l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 178 RAMLQHR-VIVIDSLKN 193 (331)
T ss_dssp HHHHHCS-EEEEECCTT
T ss_pred HHHhhCC-EEEEecccc
Confidence 7777766 999999976
No 46
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.76 E-value=0.0042 Score=61.51 Aligned_cols=39 Identities=13% Similarity=0.052 Sum_probs=29.4
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+..++.|...+..+. ++-+.++|+.|+||||+|+.+.+
T Consensus 30 ~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp CHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 3455666666666553 33389999999999999999887
No 47
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.68 E-value=0.0028 Score=61.71 Aligned_cols=95 Identities=13% Similarity=0.142 Sum_probs=50.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDY 269 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 269 (518)
...+.++|+.|+||||+|+.+.+ .....-...+.+..+.-.+.. ....++ +..... ....... .+.+.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~--~~~~~~~~~~~~~~~~~~~~~-~~~~l~---g~~~~~--~~~~~~~----~~~~~ 114 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAA--TLFDTEEAMIRIDMTEYMEKH-AVSRLI---GAPPGY--VGYEEGG----QLTEA 114 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHH--HHHSCGGGEEEEEGGGCCSTT-HHHHHH---CCCTTS--TTTTTCC----HHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHH--HHcCCCcceEEeecccccccc-cHHHhc---CCCCcc--ccccccc----hHHHH
Confidence 46899999999999999999988 332221223445554332211 122222 111110 0000001 22233
Q ss_pred hc-cCcEEEEEcCCCC-ChHHHHHHhhhc
Q 010117 270 LT-AKKYFIVLDDVFD-DSEIWHDLVEFL 296 (518)
Q Consensus 270 L~-~kr~LlVLDdvw~-~~~~~~~l~~~l 296 (518)
+. ...-+|+||++.. .......+...+
T Consensus 115 ~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l 143 (311)
T 4fcw_A 115 VRRRPYSVILFDAIEKAHPDVFNILLQML 143 (311)
T ss_dssp HHHCSSEEEEEETGGGSCHHHHHHHHHHH
T ss_pred HHhCCCeEEEEeChhhcCHHHHHHHHHHH
Confidence 32 3457999999976 456666666554
No 48
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.67 E-value=0.0023 Score=62.14 Aligned_cols=24 Identities=13% Similarity=0.075 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
..+.+.++|++|+|||+||+.+++
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456788899999999999999998
No 49
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.66 E-value=0.0062 Score=60.10 Aligned_cols=41 Identities=15% Similarity=0.081 Sum_probs=31.0
Q ss_pred hhhhHHHHHHHHhcC---CCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEG---PPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
++..++.+..++... ......|.|+|+.|+|||+||+.+.+
T Consensus 34 ~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 34 QESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 566666666666532 33456689999999999999999987
No 50
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.65 E-value=0.0033 Score=62.88 Aligned_cols=25 Identities=8% Similarity=0.017 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
..+-|.|+|+.|+|||+||+.+++.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999999983
No 51
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.62 E-value=0.0027 Score=60.48 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=20.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
..|.|+|..|+|||+||+.+++.
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCEEEECCCCCcHHHHHHHHHHh
Confidence 45779999999999999999984
No 52
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.61 E-value=0.011 Score=60.84 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=29.9
Q ss_pred hhhhHHHHHHHHhc----C------CCCceEEEEEcCCCccHHHHHHHHHcC
Q 010117 172 FERGREELFDLLIE----G------PPRLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 172 r~~~~~~l~~~L~~----~------~~~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.+..++.|.+.+.. . ....+-|.++|++|+|||+||+.+++.
T Consensus 139 ~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 139 LEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 55556666555421 1 123467899999999999999999983
No 53
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.61 E-value=0.0048 Score=57.01 Aligned_cols=117 Identities=12% Similarity=0.012 Sum_probs=62.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCC------------------
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVS------------------ 252 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~------------------ 252 (518)
.++.|+|.+|+|||||+..+... ....=..++|+.... ....+...+. .++......
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~--~~~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAK--GLRDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH--HHHHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH--HHHCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCce
Confidence 68999999999999999998852 211112355655433 3444444332 333221100
Q ss_pred -ccccCCHHHHHHHHHHHhcc-C--cEEEEEcCCCC----ChHHHHHHhhhcCC--CCCCcEEEEEecch
Q 010117 253 -VIIGEDYQLKKSILQDYLTA-K--KYFIVLDDVFD----DSEIWHDLVEFLPD--NQNGSRVLITLLWF 312 (518)
Q Consensus 253 -~~~~~~~~~~~~~l~~~L~~-k--r~LlVLDdvw~----~~~~~~~l~~~l~~--~~~gskIivTTR~~ 312 (518)
.....+..++...+...+.. + ..+||+|..-. +......+...+.. ...|..||+||...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 00112556666666655532 3 34999999862 23223333222221 12477899998865
No 54
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.59 E-value=0.018 Score=53.89 Aligned_cols=54 Identities=9% Similarity=0.079 Sum_probs=35.1
Q ss_pred HHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcC---CCCCCcEEEEEecchhhhhhc
Q 010117 265 ILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLP---DNQNGSRVLITLLWFELQKGE 318 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~---~~~~gskIivTTR~~~va~~~ 318 (518)
.+...|-.+.=+|+||.--. |...-..+...+. .-..|..||++|.+...+..+
T Consensus 137 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~ 195 (237)
T 2cbz_A 137 SLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQV 195 (237)
T ss_dssp HHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGS
T ss_pred HHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhC
Confidence 45566666777899999876 4555555555552 222477899999887665433
No 55
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.55 E-value=0.0067 Score=62.53 Aligned_cols=34 Identities=18% Similarity=0.155 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 177 EELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 177 ~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
..+...+..+. ...+.|+|+.|+||||||+.+.+
T Consensus 39 ~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 39 KPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp SHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHH
Confidence 45556665553 47799999999999999999998
No 56
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.55 E-value=0.0059 Score=64.24 Aligned_cols=126 Identities=12% Similarity=0.058 Sum_probs=66.4
Q ss_pred hhhhHHHHHHHHhcC---------------CCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHH
Q 010117 172 FERGREELFDLLIEG---------------PPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGK 236 (518)
Q Consensus 172 r~~~~~~l~~~L~~~---------------~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~ 236 (518)
++..++.+.++|... ....+.+.|+|+.|+||||+|+.+.+. .. + ..+.+..+..... .
T Consensus 44 ~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~--l~--~-~~i~in~s~~~~~-~ 117 (516)
T 1sxj_A 44 NKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE--LG--Y-DILEQNASDVRSK-T 117 (516)
T ss_dssp CHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH--TT--C-EEEEECTTSCCCH-H
T ss_pred CHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH--cC--C-CEEEEeCCCcchH-H
Confidence 778888888888651 013478999999999999999999984 32 2 2334455544443 2
Q ss_pred HHHHHHhhcCCCCCCCccccCCHHHHHHHHHHHhccCcEEEEEcCCCC-C---hHHHHHHhhhcCCCCCCcEEEEEecc
Q 010117 237 ILDDIINPVMPPSRVSVIIGEDYQLKKSILQDYLTAKKYFIVLDDVFD-D---SEIWHDLVEFLPDNQNGSRVLITLLW 311 (518)
Q Consensus 237 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~-~---~~~~~~l~~~l~~~~~gskIivTTR~ 311 (518)
++...+........... --..... .....+++.+|++|++.. . ...+..+...+... +..||++|..
T Consensus 118 ~~~~~i~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~ 188 (516)
T 1sxj_A 118 LLNAGVKNALDNMSVVG-YFKHNEE-----AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNE 188 (516)
T ss_dssp HHHHTGGGGTTBCCSTT-TTTC---------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESC
T ss_pred HHHHHHHHHhccccHHH-HHhhhhh-----hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcC
Confidence 33333332221110000 0000000 001235788999999965 1 22334444433322 3346665544
No 57
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.54 E-value=0.0066 Score=60.61 Aligned_cols=23 Identities=13% Similarity=0.099 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+-|.|+|+.|+|||+||+.+++
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHH
Confidence 34588999999999999999998
No 58
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.52 E-value=0.012 Score=51.41 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=18.8
Q ss_pred eEEEEEcCCCccHHHHHHHH
Q 010117 191 SVVAILDSSGFEMTAFAADA 210 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v 210 (518)
.+|.|+|+.|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 59
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.51 E-value=0.0064 Score=57.48 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=20.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
+-+.|+|+.|+||||||+.+.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 34889999999999999999883
No 60
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.44 E-value=0.033 Score=51.73 Aligned_cols=54 Identities=15% Similarity=0.080 Sum_probs=35.7
Q ss_pred HHHHHhccCcEEEEEcCCCC--ChHHHHHHhhh-cCCCCCCcEEEEEecchhhhhhc
Q 010117 265 ILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEF-LPDNQNGSRVLITLLWFELQKGE 318 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~-l~~~~~gskIivTTR~~~va~~~ 318 (518)
.+...|-.+.=+|+||.--. |...-..+... +.....|..||++|.+...+..+
T Consensus 140 ~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~ 196 (229)
T 2pze_A 140 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKA 196 (229)
T ss_dssp HHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHC
T ss_pred HHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhC
Confidence 45666667777999999876 55555666554 23223467789999887665443
No 61
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.38 E-value=0.0089 Score=60.40 Aligned_cols=41 Identities=12% Similarity=0.128 Sum_probs=29.6
Q ss_pred hhhhHHHHHHHHhc----C------CCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIE----G------PPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~----~------~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+..++.|.+.+.. . ....+-|.|+|..|+|||+||+.+.+
T Consensus 120 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 120 QDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 55566666665521 1 12246789999999999999999988
No 62
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.26 E-value=0.0059 Score=59.66 Aligned_cols=55 Identities=7% Similarity=0.021 Sum_probs=35.5
Q ss_pred hhhhHHHHHHHHhcCCC-CceEEEEEcCCCccHHHHHHHHHcCCCcc-cccceEEEEEc
Q 010117 172 FERGREELFDLLIEGPP-RLSVVAILDSSGFEMTAFAADAFNNNHVK-FYFDCHAWVRV 228 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~-~~~vi~I~G~gGvGKTtLA~~v~~d~~~~-~~F~~~~wv~v 228 (518)
+....+.+.+++..... ....+.|+|..|+|||+||+.+++ ... ..-..++++++
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~--~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAH--ELSEKKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHH--HHHHHSCCCEEEEEH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHH--HHHHhcCCcEEEEEH
Confidence 44455556666664322 246788999999999999999998 333 22223455544
No 63
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.20 E-value=0.034 Score=52.81 Aligned_cols=123 Identities=11% Similarity=0.105 Sum_probs=66.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC-Cccc-ccc-----------eEEEEEcCCCC----CHH--------------HHHH
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNN-HVKF-YFD-----------CHAWVRVSIAY----DFG--------------KILD 239 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~-~~~~-~F~-----------~~~wv~vs~~~----~~~--------------~i~~ 239 (518)
.+++|+|+.|.|||||.+.+..-. .-.. .|+ .+.| .+.+.+ ++. +-..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~g~~~~~~~~~~~i~~-~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~ 109 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYST-NLPEAYEIGVTVNDIVYLYEELKGLDRDLFL 109 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGCSCCTTEEE-CCGGGSCTTSBHHHHHHHHHHHTCCCHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCcEEEECCEECcchHHhhheEE-EeCCCCccCCcHHHHHHHhhhhcchHHHHHH
Confidence 489999999999999999997531 0000 011 1221 233332 221 1234
Q ss_pred HHHhhcCCC-CCC-CccccCCHHHHH-HHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCCCCCCcEEEEEecchhh
Q 010117 240 DIINPVMPP-SRV-SVIIGEDYQLKK-SILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPDNQNGSRVLITLLWFEL 314 (518)
Q Consensus 240 ~i~~~l~~~-~~~-~~~~~~~~~~~~-~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~~~gskIivTTR~~~v 314 (518)
++++.++.. ... ..+...+..+.+ -.+...|..+.=+|+||.--. |...-..+...+..-.. .||++|.+...
T Consensus 110 ~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~ 187 (263)
T 2pjz_A 110 EMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDM 187 (263)
T ss_dssp HHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGG
T ss_pred HHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHH
Confidence 455555544 211 112333333333 356666777777999999876 44444444443332222 68888888655
Q ss_pred hh
Q 010117 315 QK 316 (518)
Q Consensus 315 a~ 316 (518)
+.
T Consensus 188 ~~ 189 (263)
T 2pjz_A 188 LN 189 (263)
T ss_dssp GG
T ss_pred HH
Confidence 43
No 64
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.18 E-value=0.035 Score=51.78 Aligned_cols=55 Identities=15% Similarity=0.181 Sum_probs=35.0
Q ss_pred HHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC--CCCCcEEEEEecchhhhhhc
Q 010117 264 SILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD--NQNGSRVLITLLWFELQKGE 318 (518)
Q Consensus 264 ~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~--~~~gskIivTTR~~~va~~~ 318 (518)
-.+...|..+.=+|+||.--. |...-..+...+.. ...|..||++|.+..++..+
T Consensus 154 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~ 212 (235)
T 3tif_A 154 VAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFG 212 (235)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTS
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhC
Confidence 356666667777999999876 44433333333321 12267899999998877544
No 65
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.13 E-value=0.0047 Score=56.50 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=28.7
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 175 GREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 175 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
..++|.+.+......-.+|+|+|..|.|||||++.+..
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44555555544334568999999999999999998876
No 66
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.13 E-value=0.026 Score=54.85 Aligned_cols=39 Identities=18% Similarity=0.122 Sum_probs=26.3
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcC
Q 010117 175 GREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 175 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.+.++.+.+..-.....-|.|+|..|+|||++|+.+++.
T Consensus 10 ~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 10 AMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp HHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHh
Confidence 344444444331112345779999999999999999984
No 67
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.12 E-value=0.02 Score=56.28 Aligned_cols=94 Identities=12% Similarity=0.073 Sum_probs=58.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccc----cceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC-----CccccCCHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFY----FDCHAWVRVSIAYDFGKILDDIINPVMPPSRV-----SVIIGEDYQ 260 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~----F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-----~~~~~~~~~ 260 (518)
-.++.|+|.+|+||||||.++......... -..++|++....++..++.. +++.++..... ......+.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHH
Confidence 468999999999999999998764222211 23588999888888776653 44555443210 000122333
Q ss_pred ---HHHHHHHHHhc--cCcEEEEEcCCCC
Q 010117 261 ---LKKSILQDYLT--AKKYFIVLDDVFD 284 (518)
Q Consensus 261 ---~~~~~l~~~L~--~kr~LlVLDdvw~ 284 (518)
++...+...++ .+--+||+|.+-.
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 34455666664 4567999999864
No 68
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.12 E-value=0.018 Score=53.58 Aligned_cols=94 Identities=4% Similarity=-0.036 Sum_probs=55.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCccc----ccceEEEEEcCCCCCHHHHHHHHHhhcCCCCC----C-CccccCCHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKF----YFDCHAWVRVSIAYDFGKILDDIINPVMPPSR----V-SVIIGEDYQ 260 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~----~-~~~~~~~~~ 260 (518)
-.++.|+|.+|+|||||+..+........ .-..++|+.....++...+. .+++.++.... . ......+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 36899999999999999999887322211 12468888877766655443 34444443210 0 000122233
Q ss_pred H---HHHHHHHHhc-cCcEEEEEcCCCC
Q 010117 261 L---KKSILQDYLT-AKKYFIVLDDVFD 284 (518)
Q Consensus 261 ~---~~~~l~~~L~-~kr~LlVLDdvw~ 284 (518)
+ ....+.+.+. .+.-+||+|.+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 3 2334555554 3677999999875
No 69
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.10 E-value=0.017 Score=60.21 Aligned_cols=70 Identities=14% Similarity=0.201 Sum_probs=42.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHH
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQD 268 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 268 (518)
...-|.|+|+.|+|||+||+.+.+ .....| +.++. . ++...+. ......+...+..
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~--~~~~~f---v~vn~------~----~l~~~~~---------g~~~~~~~~~f~~ 292 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLING------P----EIMSKLA---------GESESNLRKAFEE 292 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH--HCSSEE---EEEEH------H----HHHTSCT---------THHHHHHHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHH--HhCCCE---EEEEc------h----Hhhhhhc---------chhHHHHHHHHHH
Confidence 345688999999999999999988 333333 22221 1 1111111 1112233444555
Q ss_pred HhccCcEEEEEcCC
Q 010117 269 YLTAKKYFIVLDDV 282 (518)
Q Consensus 269 ~L~~kr~LlVLDdv 282 (518)
...++..+|+||++
T Consensus 293 A~~~~p~iLfLDEI 306 (489)
T 3hu3_A 293 AEKNAPAIIFIDEL 306 (489)
T ss_dssp HHHTCSEEEEEESH
T ss_pred HHhcCCcEEEecch
Confidence 55667889999999
No 70
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.09 E-value=0.012 Score=58.46 Aligned_cols=89 Identities=16% Similarity=0.104 Sum_probs=57.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCC-ccccCCHHHHHHHHH
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVS-VIIGEDYQLKKSILQ 267 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~-~~~~~~~~~~~~~l~ 267 (518)
.-.++.|.|.+|+||||||.++... ....=..++|++....++.. .++.++...... .....+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 3479999999999999999998873 22211246788877777654 344444432110 013445667666666
Q ss_pred HHhc-cCcEEEEEcCCCC
Q 010117 268 DYLT-AKKYFIVLDDVFD 284 (518)
Q Consensus 268 ~~L~-~kr~LlVLDdvw~ 284 (518)
..++ ++.-++|+|.+-.
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 6664 4556899999755
No 71
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.02 E-value=0.036 Score=53.47 Aligned_cols=85 Identities=8% Similarity=-0.005 Sum_probs=45.3
Q ss_pred CCCCceEEEEEcCCCccHHHHHHHHHcCCCcccc---cceEEEEEcCCCCCHHHHHHHHHhhcCC---CCCCCccccCCH
Q 010117 186 GPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFY---FDCHAWVRVSIAYDFGKILDDIINPVMP---PSRVSVIIGEDY 259 (518)
Q Consensus 186 ~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~---F~~~~wv~vs~~~~~~~i~~~i~~~l~~---~~~~~~~~~~~~ 259 (518)
......+|+|+|..|+||||||+.+..- .... ......|+...-+-.......+...... -.....+...+.
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~--l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~ 104 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNH--LMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDM 104 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHH--HHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHH--hhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHH
Confidence 3456789999999999999999988762 2211 2234444554433333444444322100 000011245566
Q ss_pred HHHHHHHHHHhcc
Q 010117 260 QLKKSILQDYLTA 272 (518)
Q Consensus 260 ~~~~~~l~~~L~~ 272 (518)
..+.+.+.....+
T Consensus 105 ~~l~~~l~~l~~g 117 (290)
T 1odf_A 105 KLLQEVLNTIFNN 117 (290)
T ss_dssp HHHHHHHHHHTC-
T ss_pred HHHHHHHHHhhcc
Confidence 6666666655444
No 72
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.02 E-value=0.059 Score=49.84 Aligned_cols=127 Identities=10% Similarity=0.023 Sum_probs=67.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcc-c--cc------------------ceEEEEEcCC----CCCHHH---------
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVK-F--YF------------------DCHAWVRVSI----AYDFGK--------- 236 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~-~--~F------------------~~~~wv~vs~----~~~~~~--------- 236 (518)
.+++|+|+.|.|||||.+.+..-..-. . .| ..+.+|.-.. ..++.+
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~ 110 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM 110 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc
Confidence 589999999999999999987521100 0 00 1123332111 112211
Q ss_pred ---------HHHHHHhhcCCCCCC-CccccCCHHHHH-HHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC-CCCC
Q 010117 237 ---------ILDDIINPVMPPSRV-SVIIGEDYQLKK-SILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD-NQNG 302 (518)
Q Consensus 237 ---------i~~~i~~~l~~~~~~-~~~~~~~~~~~~-~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~-~~~g 302 (518)
-..++++.++..... ..+...+..+.+ -.+...|..+.=+|+||.--. |...-..+...+.. ...|
T Consensus 111 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g 190 (224)
T 2pcj_A 111 GKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGG 190 (224)
T ss_dssp TCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 223445555443221 112333333333 356666777777999999866 44433333333321 1126
Q ss_pred cEEEEEecchhhhhh
Q 010117 303 SRVLITLLWFELQKG 317 (518)
Q Consensus 303 skIivTTR~~~va~~ 317 (518)
..||++|.+...+..
T Consensus 191 ~tvi~vtHd~~~~~~ 205 (224)
T 2pcj_A 191 TSIVMVTHERELAEL 205 (224)
T ss_dssp CEEEEECSCHHHHTT
T ss_pred CEEEEEcCCHHHHHh
Confidence 779999998776643
No 73
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.00 E-value=0.013 Score=60.55 Aligned_cols=100 Identities=11% Similarity=0.152 Sum_probs=55.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHHh
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDYL 270 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L 270 (518)
+-|.|+|++|+|||+||+.+.+ +....| +.++.+.-.+. . ...........+....
T Consensus 50 ~gvLL~GppGtGKT~Laraia~--~~~~~f---~~is~~~~~~~----------~---------~g~~~~~~r~lf~~A~ 105 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAG--EANVPF---FHISGSDFVEL----------F---------VGVGAARVRDLFAQAK 105 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH--HHTCCE---EEEEGGGTTTC----------C---------TTHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HcCCCe---eeCCHHHHHHH----------H---------hcccHHHHHHHHHHHH
Confidence 3478999999999999999998 333222 23333222110 0 0111223334455555
Q ss_pred ccCcEEEEEcCCCC-C--------------hHHHHHHhhhcC--CCCCCcEEEEEecchhh
Q 010117 271 TAKKYFIVLDDVFD-D--------------SEIWHDLVEFLP--DNQNGSRVLITLLWFEL 314 (518)
Q Consensus 271 ~~kr~LlVLDdvw~-~--------------~~~~~~l~~~l~--~~~~gskIivTTR~~~v 314 (518)
.+...+|+||++.. . ......+...+. ....+..||.||...+.
T Consensus 106 ~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~ 166 (476)
T 2ce7_A 106 AHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDI 166 (476)
T ss_dssp HTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGG
T ss_pred hcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhh
Confidence 66789999999954 0 012334433322 12235667777776654
No 74
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.98 E-value=0.045 Score=54.21 Aligned_cols=95 Identities=5% Similarity=0.006 Sum_probs=58.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCccc----ccceEEEEEcCCCCCHHHHHHHHHhhcCCCCC----C---Ccc-cc
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVKF----YFDCHAWVRVSIAYDFGKILDDIINPVMPPSR----V---SVI-IG 256 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~----~---~~~-~~ 256 (518)
.-.++.|+|..|+||||||..+........ .-..++|++....++..++.. ++..++.... . ..+ ..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCH
Confidence 457999999999999999999887422211 124588999888888776553 3444443210 0 000 11
Q ss_pred CCHHHHHHHHHHHhc---cCcEEEEEcCCCC
Q 010117 257 EDYQLKKSILQDYLT---AKKYFIVLDDVFD 284 (518)
Q Consensus 257 ~~~~~~~~~l~~~L~---~kr~LlVLDdvw~ 284 (518)
....++...+...+. .+--+||+|.+-.
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 122234445555554 4566999999864
No 75
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.97 E-value=0.0052 Score=56.94 Aligned_cols=113 Identities=15% Similarity=-0.046 Sum_probs=64.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDY 269 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 269 (518)
-.++.|.|..|.||||++..+.+ +...+-..++.+.... +.. -...|++.++..... .......++.+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~--r~~~~g~kVli~~~~~--d~r-~~~~i~srlG~~~~~--~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLH--RLEYADVKYLVFKPKI--DTR-SIRNIQSRTGTSLPS--VEVESAPEILNYIMSN 84 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEEEEECC--CGG-GCSSCCCCCCCSSCC--EEESSTHHHHHHHHST
T ss_pred cEEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEEecc--Cch-HHHHHHHhcCCCccc--cccCCHHHHHHHHHHH
Confidence 46899999999999999887776 3332222233332222 211 222445555433221 1123445566666666
Q ss_pred hccCcE-EEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEEecch
Q 010117 270 LTAKKY-FIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLITLLWF 312 (518)
Q Consensus 270 L~~kr~-LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~ 312 (518)
+.+.++ +||+|.+.. ..+..+.+..... .|-.||+|-+..
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~---~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVANILAE---NGFVVIISGLDK 126 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEECCSB
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHHHHHh---CCCeEEEEeccc
Confidence 555555 999999975 3445444443222 267899998854
No 76
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.94 E-value=0.018 Score=53.03 Aligned_cols=126 Identities=13% Similarity=0.022 Sum_probs=63.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcc-c--ccc---------eEEEEEcCCC----CCHHH----------------HH
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVK-F--YFD---------CHAWVRVSIA----YDFGK----------------IL 238 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~-~--~F~---------~~~wv~vs~~----~~~~~----------------i~ 238 (518)
.+++|+|+.|.|||||.+.+..-..-. . .|+ .+.+|.-... .++.+ -.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~ 115 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEI 115 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHH
Confidence 479999999999999999987631110 0 011 1223321111 12221 22
Q ss_pred HHHHhhcCCCCCCCccccCCHHHHH-HHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC-CCCCcEEEEEecchhh
Q 010117 239 DDIINPVMPPSRVSVIIGEDYQLKK-SILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD-NQNGSRVLITLLWFEL 314 (518)
Q Consensus 239 ~~i~~~l~~~~~~~~~~~~~~~~~~-~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~-~~~gskIivTTR~~~v 314 (518)
.++++.++.......+...+..+.+ -.+...|..++=+|+||.--. |...-..+...+.. ...|..||++|.+...
T Consensus 116 ~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~ 195 (214)
T 1sgw_A 116 MDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS 195 (214)
T ss_dssp HHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCT
T ss_pred HHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 3444555443211112233333333 345666777778999999766 33222222222211 1125668888887654
Q ss_pred hh
Q 010117 315 QK 316 (518)
Q Consensus 315 a~ 316 (518)
+.
T Consensus 196 ~~ 197 (214)
T 1sgw_A 196 YC 197 (214)
T ss_dssp TS
T ss_pred HH
Confidence 43
No 77
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.94 E-value=0.0087 Score=54.40 Aligned_cols=41 Identities=15% Similarity=0.009 Sum_probs=32.0
Q ss_pred hhhhHHHHHHHHhcC-CCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEG-PPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~-~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
|++..+.|.+.+... .....+|+|+|..|+|||||++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 445667777777653 23567999999999999999998876
No 78
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.93 E-value=0.046 Score=51.71 Aligned_cols=127 Identities=9% Similarity=0.018 Sum_probs=65.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcc-c--cc-------------ceEEEEEcCC----CCCHHH--------------
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVK-F--YF-------------DCHAWVRVSI----AYDFGK-------------- 236 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~-~--~F-------------~~~~wv~vs~----~~~~~~-------------- 236 (518)
.+++|+|+.|.|||||.+.+..-.... . .| ..+.++.-.. ..++.+
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~ 121 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSS 121 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChH
Confidence 589999999999999999987531110 0 01 0122332111 112221
Q ss_pred ----HHHHHHhhcCCCCCC-CccccCCHHHH-HHHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC-CCCCcEEEE
Q 010117 237 ----ILDDIINPVMPPSRV-SVIIGEDYQLK-KSILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD-NQNGSRVLI 307 (518)
Q Consensus 237 ----i~~~i~~~l~~~~~~-~~~~~~~~~~~-~~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~-~~~gskIiv 307 (518)
-..++++.++..... ..+...+..+. .-.+...|..+.=+|+||.--. |...-..+...+.. ...|..||+
T Consensus 122 ~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiii 201 (256)
T 1vpl_A 122 EIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILV 201 (256)
T ss_dssp HHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 123344444432210 11223333333 3345666677777999999876 44333333332221 123677999
Q ss_pred Eecchhhhhh
Q 010117 308 TLLWFELQKG 317 (518)
Q Consensus 308 TTR~~~va~~ 317 (518)
+|.+...+..
T Consensus 202 vtHd~~~~~~ 211 (256)
T 1vpl_A 202 SSHNMLEVEF 211 (256)
T ss_dssp EECCHHHHTT
T ss_pred EcCCHHHHHH
Confidence 9988665543
No 79
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.88 E-value=0.011 Score=57.21 Aligned_cols=23 Identities=13% Similarity=0.094 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+.+.|+|++|+||||||+.+.+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 46789999999999999999998
No 80
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.86 E-value=0.026 Score=55.31 Aligned_cols=95 Identities=12% Similarity=0.081 Sum_probs=58.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCccc---------cc-----ceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC---
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVKF---------YF-----DCHAWVRVSIAYDFGKILDDIINPVMPPSRV--- 251 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~---------~F-----~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~--- 251 (518)
.-.++.|.|.+|+||||||.++..+..... .. ..++|++....++..++.+ +++.++.....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 347999999999999999998876422211 11 4688999888888777664 34555443210
Q ss_pred C--ccccCCHH---HHHHHHHHHhcc--CcEEEEEcCCCC
Q 010117 252 S--VIIGEDYQ---LKKSILQDYLTA--KKYFIVLDDVFD 284 (518)
Q Consensus 252 ~--~~~~~~~~---~~~~~l~~~L~~--kr~LlVLDdvw~ 284 (518)
. .....+.+ ++...+...+.. +--+||+|.+-.
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 215 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTS 215 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSH
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 0 00122333 344456666653 456999999854
No 81
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.85 E-value=0.13 Score=48.78 Aligned_cols=54 Identities=7% Similarity=0.070 Sum_probs=34.8
Q ss_pred HHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC-CCCCcEEEEEecchhhhhh
Q 010117 264 SILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD-NQNGSRVLITLLWFELQKG 317 (518)
Q Consensus 264 ~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~-~~~gskIivTTR~~~va~~ 317 (518)
-.|...|..+.=+|+||.--. |...-..+...+.. ...|..||++|.+...+..
T Consensus 173 v~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~ 229 (267)
T 2zu0_C 173 NDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDY 229 (267)
T ss_dssp HHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGT
T ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHh
Confidence 345666777777999999876 44444444443332 2247789999998766543
No 82
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.85 E-value=0.017 Score=57.33 Aligned_cols=89 Identities=18% Similarity=0.075 Sum_probs=56.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCC-ccccCCHHHHHHHHH
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVS-VIIGEDYQLKKSILQ 267 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~-~~~~~~~~~~~~~l~ 267 (518)
.-.++.|.|.+|+||||||.++... ....=..++|++....++.. ..+.++.....- .....+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 3468999999999999999988763 22222357899988777653 234444332110 012335666666666
Q ss_pred HHhcc-CcEEEEEcCCCC
Q 010117 268 DYLTA-KKYFIVLDDVFD 284 (518)
Q Consensus 268 ~~L~~-kr~LlVLDdvw~ 284 (518)
..... +.-+||+|.+-.
T Consensus 133 ~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHTTTCCSEEEEECGGG
T ss_pred HHHhcCCCCEEEEcChHh
Confidence 55543 456999999854
No 83
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.83 E-value=0.057 Score=51.40 Aligned_cols=126 Identities=13% Similarity=0.032 Sum_probs=67.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcc-c--cc--------------ceEEEEEcCC----CCC----------------
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVK-F--YF--------------DCHAWVRVSI----AYD---------------- 233 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~-~--~F--------------~~~~wv~vs~----~~~---------------- 233 (518)
.+++|+|+.|.|||||.+.+..-..-. . .| ..+.++.-.. ..+
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 117 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQ 117 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTT
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHH
Confidence 589999999999999999987521110 0 01 0122221110 011
Q ss_pred HHHHHHHHHhhcCCCCCC-CccccCCHHHHH-HHHHHHhcc------CcEEEEEcCCCC--ChHHHHHHhhhcCC--CCC
Q 010117 234 FGKILDDIINPVMPPSRV-SVIIGEDYQLKK-SILQDYLTA------KKYFIVLDDVFD--DSEIWHDLVEFLPD--NQN 301 (518)
Q Consensus 234 ~~~i~~~i~~~l~~~~~~-~~~~~~~~~~~~-~~l~~~L~~------kr~LlVLDdvw~--~~~~~~~l~~~l~~--~~~ 301 (518)
..+-..++++.++..... ..+...+..+.+ -.|...|.. +.=+|+||.--. |...-..+...+.. ...
T Consensus 118 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~ 197 (266)
T 4g1u_C 118 DRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQE 197 (266)
T ss_dssp HHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcC
Confidence 223345556665543321 112333334333 356666666 888999999766 44333333333321 122
Q ss_pred CcEEEEEecchhhhh
Q 010117 302 GSRVLITLLWFELQK 316 (518)
Q Consensus 302 gskIivTTR~~~va~ 316 (518)
|..||++|.+...+.
T Consensus 198 ~~tvi~vtHdl~~~~ 212 (266)
T 4g1u_C 198 PLAVCCVLHDLNLAA 212 (266)
T ss_dssp SEEEEEECSCHHHHH
T ss_pred CCEEEEEEcCHHHHH
Confidence 557888888876654
No 84
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.80 E-value=0.017 Score=57.58 Aligned_cols=89 Identities=12% Similarity=-0.031 Sum_probs=55.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCC-ccccCCHHHHHHHHH
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVS-VIIGEDYQLKKSILQ 267 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~-~~~~~~~~~~~~~l~ 267 (518)
.-.++.|.|.+|+||||||.++... ....=..++|++....++... +..++.....- .....+.+++...+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 3468999999999999999888763 222223588999888777542 34444332100 012234566666665
Q ss_pred HHhc-cCcEEEEEcCCCC
Q 010117 268 DYLT-AKKYFIVLDDVFD 284 (518)
Q Consensus 268 ~~L~-~kr~LlVLDdvw~ 284 (518)
...+ ++--+||+|.+-.
T Consensus 135 ~l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHHTCCSEEEEECGGG
T ss_pred HHHhccCCCEEEEcCHHH
Confidence 5543 3445999999854
No 85
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.80 E-value=0.02 Score=57.26 Aligned_cols=88 Identities=13% Similarity=0.014 Sum_probs=56.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCC-ccccCCHHHHHHHHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVS-VIIGEDYQLKKSILQD 268 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~-~~~~~~~~~~~~~l~~ 268 (518)
-.++.|.|.+|+||||||..+... ....=..++|++....++.. .++.++.....- .....+.+++...+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 458888999999999999888763 22222368899998877754 234444332100 0123456777777776
Q ss_pred Hhcc-CcEEEEEcCCCC
Q 010117 269 YLTA-KKYFIVLDDVFD 284 (518)
Q Consensus 269 ~L~~-kr~LlVLDdvw~ 284 (518)
.++. +--+||+|.+-.
T Consensus 147 l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHTTTCCSEEEEECTTT
T ss_pred HHhcCCCCEEEEeChHH
Confidence 6654 445999999854
No 86
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.74 E-value=0.032 Score=52.48 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+++|+|..|.|||||.+.+..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999875
No 87
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.72 E-value=0.098 Score=57.63 Aligned_cols=39 Identities=21% Similarity=0.126 Sum_probs=32.9
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
|+.+++.+++.|.... ..-+.|+|.+|+||||+|+.+.+
T Consensus 191 r~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 191 REKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp CHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHH
Confidence 8889999999887652 34568999999999999999887
No 88
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.71 E-value=0.014 Score=60.51 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=32.8
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
++.+++.+++.|.... ..-+.|+|.+|+|||++|+.+.+
T Consensus 185 r~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 185 RSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 8899999999987642 23457999999999999999887
No 89
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.70 E-value=0.033 Score=55.30 Aligned_cols=95 Identities=9% Similarity=0.081 Sum_probs=55.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCccccc---c-eEEEEEcCCCCCHHHHHHHHHhhcCCCCCC--------Ccccc
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVKFYF---D-CHAWVRVSIAYDFGKILDDIINPVMPPSRV--------SVIIG 256 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F---~-~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~--------~~~~~ 256 (518)
.-.++.|+|..|+|||||+..+.......... . .++|++....+...++ ..+.+..+..... .....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 34799999999999999999988732111111 2 3488887666544443 3344444322100 00011
Q ss_pred CCHHHHHHHHHHHhc------cCcEEEEEcCCCC
Q 010117 257 EDYQLKKSILQDYLT------AKKYFIVLDDVFD 284 (518)
Q Consensus 257 ~~~~~~~~~l~~~L~------~kr~LlVLDdvw~ 284 (518)
....++...+...+. .+.-+||+|.+-.
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 122334455555554 4677999999876
No 90
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.66 E-value=0.027 Score=54.54 Aligned_cols=87 Identities=9% Similarity=0.015 Sum_probs=46.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCC-CCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHH
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSI-AYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQ 267 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 267 (518)
...+++|+|.+|+||||++..+..-....... .+..+.... .....+.+....+..+.+.. ...+...+...+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~----~~~~~~~l~~al~ 178 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-KIAFITTDTYRIAAVEQLKTYAELLQAPLE----VCYTKEEFQQAKE 178 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-CEEEEECCCSSTTHHHHHHHHHTTTTCCCC----BCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-EEEEEecCcccchHHHHHHHHHHhcCCCeE----ecCCHHHHHHHHH
Confidence 35799999999999999998887521111111 234444322 22344445444444443322 1223444544444
Q ss_pred HHhccCcEEEEEcCC
Q 010117 268 DYLTAKKYFIVLDDV 282 (518)
Q Consensus 268 ~~L~~kr~LlVLDdv 282 (518)
. + .+.=++++|-.
T Consensus 179 ~-~-~~~dlvIiDT~ 191 (296)
T 2px0_A 179 L-F-SEYDHVFVDTA 191 (296)
T ss_dssp H-G-GGSSEEEEECC
T ss_pred H-h-cCCCEEEEeCC
Confidence 3 3 33447788844
No 91
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.63 E-value=0.095 Score=50.50 Aligned_cols=54 Identities=15% Similarity=0.060 Sum_probs=35.0
Q ss_pred HHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhc-CCCCCCcEEEEEecchhhhhhc
Q 010117 265 ILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFL-PDNQNGSRVLITLLWFELQKGE 318 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l-~~~~~gskIivTTR~~~va~~~ 318 (518)
.+...|..+.=+|+||.--. |...-..+...+ ..-..|..||++|.+...+..+
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~ 225 (290)
T 2bbs_A 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKA 225 (290)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHS
T ss_pred HHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcC
Confidence 45566666777999999876 555555555532 2223467799999887665433
No 92
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.63 E-value=0.074 Score=50.39 Aligned_cols=22 Identities=14% Similarity=0.256 Sum_probs=20.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+++|+|+.|.|||||.+.+..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999976
No 93
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.61 E-value=0.072 Score=50.65 Aligned_cols=52 Identities=17% Similarity=0.215 Sum_probs=32.0
Q ss_pred HHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC-CCCCcEEEEEecchhhhh
Q 010117 265 ILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD-NQNGSRVLITLLWFELQK 316 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~-~~~gskIivTTR~~~va~ 316 (518)
.+...|..+.=+|+||.--. |...-..+...+.. ...|..||++|.+...+.
T Consensus 148 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~ 202 (266)
T 2yz2_A 148 AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVI 202 (266)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTG
T ss_pred HHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 45566666777999999876 44443434333321 112667899998865544
No 94
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.60 E-value=0.076 Score=52.80 Aligned_cols=125 Identities=11% Similarity=0.094 Sum_probs=69.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCccc---cc-----------------ceEEEEEcCCCC------CHH---------
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKF---YF-----------------DCHAWVRVSIAY------DFG--------- 235 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~---~F-----------------~~~~wv~vs~~~------~~~--------- 235 (518)
.+++|+|+.|.|||||.+.+..-.+-.. .| ..+.+| .|.+ ++.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v--~Q~~~l~~~~TV~env~~~~~~ 132 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMI--FQHFNLLSSRTVFGNVALPLEL 132 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEE--CSSCCCCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEE--eCCCccCCCCCHHHHHHHHHHh
Confidence 5899999999999999999875311100 01 012222 2221 111
Q ss_pred ---------HHHHHHHhhcCCCCCC-CccccCCHHHH-HHHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC--CC
Q 010117 236 ---------KILDDIINPVMPPSRV-SVIIGEDYQLK-KSILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD--NQ 300 (518)
Q Consensus 236 ---------~i~~~i~~~l~~~~~~-~~~~~~~~~~~-~~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~--~~ 300 (518)
+-..++++.++..... ..+...+..+. .-.|...|..+.=+|+||.--. |+..-..+...+.. ..
T Consensus 133 ~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~ 212 (366)
T 3tui_C 133 DNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRR 212 (366)
T ss_dssp SCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHh
Confidence 1233455555543211 11233344443 3457777888888999999866 44333333333321 12
Q ss_pred CCcEEEEEecchhhhhh
Q 010117 301 NGSRVLITLLWFELQKG 317 (518)
Q Consensus 301 ~gskIivTTR~~~va~~ 317 (518)
.|..||++|.+..++..
T Consensus 213 ~g~Tii~vTHdl~~~~~ 229 (366)
T 3tui_C 213 LGLTILLITHEMDVVKR 229 (366)
T ss_dssp SCCEEEEEESCHHHHHH
T ss_pred CCCEEEEEecCHHHHHH
Confidence 37789999998776654
No 95
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.58 E-value=0.015 Score=64.20 Aligned_cols=96 Identities=11% Similarity=0.126 Sum_probs=52.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDY 269 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 269 (518)
...+.++|+.|+|||++|+.+.+. ....-...+-+..+.-.+ ... .....+...++.
T Consensus 521 ~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~--------------~~~------~~~~~l~~~~~~- 577 (758)
T 3pxi_A 521 IGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYME--------------KHS------TSGGQLTEKVRR- 577 (758)
T ss_dssp SEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCS--------------SCC------CC---CHHHHHH-
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhccc--------------ccc------cccchhhHHHHh-
Confidence 347999999999999999999873 211112234444433211 000 001111111111
Q ss_pred hccCcEEEEEcCCCC-ChHHHHHHhhhcCC-----------CCCCcEEEEEec
Q 010117 270 LTAKKYFIVLDDVFD-DSEIWHDLVEFLPD-----------NQNGSRVLITLL 310 (518)
Q Consensus 270 L~~kr~LlVLDdvw~-~~~~~~~l~~~l~~-----------~~~gskIivTTR 310 (518)
.....|+||++.. .....+.+...+.. .....+||.||.
T Consensus 578 --~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 578 --KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp --CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred --CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 2334899999977 45666666654432 112457888887
No 96
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.54 E-value=0.12 Score=49.23 Aligned_cols=54 Identities=19% Similarity=0.206 Sum_probs=34.0
Q ss_pred HHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC--CCCCcEEEEEecchhhhhhc
Q 010117 265 ILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD--NQNGSRVLITLLWFELQKGE 318 (518)
Q Consensus 265 ~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~--~~~gskIivTTR~~~va~~~ 318 (518)
.|...|-.+.=+|+||.--. |...-..+...+.. ...|..||++|.+...+..+
T Consensus 166 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~ 223 (271)
T 2ixe_A 166 ALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERA 223 (271)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTC
T ss_pred HHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhC
Confidence 45566666677999999876 44444444443332 12367799999887766533
No 97
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.52 E-value=0.1 Score=47.00 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
...+|.|.|+.|+||||+|+.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999986
No 98
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.49 E-value=0.025 Score=63.31 Aligned_cols=39 Identities=10% Similarity=0.167 Sum_probs=33.1
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
|+.+++.+++.|.... ..-+.++|.+|+||||||+.+.+
T Consensus 175 r~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~ 213 (854)
T 1qvr_A 175 RDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQ 213 (854)
T ss_dssp CHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHH
Confidence 8899999999887653 33468999999999999999887
No 99
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.46 E-value=0.05 Score=51.34 Aligned_cols=125 Identities=11% Similarity=0.081 Sum_probs=65.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcc-cc---cceEEEEEcCC----CCCH----------------------HHHHHH
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVK-FY---FDCHAWVRVSI----AYDF----------------------GKILDD 240 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~-~~---F~~~~wv~vs~----~~~~----------------------~~i~~~ 240 (518)
.+++|+|+.|.|||||.+.+..-..-. .. ...+.+|.-.. ..++ .+-..+
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~ 111 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQ 111 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHH
Confidence 589999999999999999998632110 00 01122221100 0011 122334
Q ss_pred HHhhcCCCCCC-CccccCCHHHH-HHHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC--CCCCcEEEEEecchhh
Q 010117 241 IINPVMPPSRV-SVIIGEDYQLK-KSILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD--NQNGSRVLITLLWFEL 314 (518)
Q Consensus 241 i~~~l~~~~~~-~~~~~~~~~~~-~~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~--~~~gskIivTTR~~~v 314 (518)
+++.++..... ..+...+..+. .-.|...|..+.=+|+||.--. |...-..+...+.. ...|..||++|.+...
T Consensus 112 ~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~ 191 (253)
T 2nq2_C 112 ALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ 191 (253)
T ss_dssp HHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHH
T ss_pred HHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 45544432210 11223333333 2345666667777999999876 44433333333321 1226678889988655
Q ss_pred h
Q 010117 315 Q 315 (518)
Q Consensus 315 a 315 (518)
+
T Consensus 192 ~ 192 (253)
T 2nq2_C 192 V 192 (253)
T ss_dssp H
T ss_pred H
Confidence 4
No 100
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.44 E-value=0.0057 Score=60.98 Aligned_cols=112 Identities=14% Similarity=0.052 Sum_probs=66.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC--CccccCCHHHHHHHHHH
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRV--SVIIGEDYQLKKSILQD 268 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~--~~~~~~~~~~~~~~l~~ 268 (518)
.+++|+|+.|.|||||.+.+.. .+......++ +++.++.... ....... ......+.......+..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g--~~~~~~~~~i-~t~ed~~e~~---------~~~~~~~v~q~~~~~~~~~~~~~La~ 191 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLD--YLNNTKYHHI-LTIEDPIEFV---------HESKKCLVNQREVHRDTLGFSEALRS 191 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH--HHHHHCCCEE-EEEESSCCSC---------CCCSSSEEEEEEBTTTBSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh--cccCCCCcEE-EEccCcHHhh---------hhccccceeeeeeccccCCHHHHHHH
Confidence 4999999999999999998876 2221111222 2222221100 0000000 00001111234457888
Q ss_pred HhccCcEEEEEcCCCCChHHHHHHhhhcCCCCCCcEEEEEecchhhhhhc
Q 010117 269 YLTAKKYFIVLDDVFDDSEIWHDLVEFLPDNQNGSRVLITLLWFELQKGE 318 (518)
Q Consensus 269 ~L~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~va~~~ 318 (518)
.|....=+|++|.+.+ .+.+..+.... ..|..||+||...+.+..+
T Consensus 192 aL~~~PdvillDEp~d-~e~~~~~~~~~---~~G~~vl~t~H~~~~~~~~ 237 (356)
T 3jvv_A 192 ALREDPDIILVGEMRD-LETIRLALTAA---ETGHLVFGTLHTTSAAKTI 237 (356)
T ss_dssp HTTSCCSEEEESCCCS-HHHHHHHHHHH---HTTCEEEEEESCSSHHHHH
T ss_pred HhhhCcCEEecCCCCC-HHHHHHHHHHH---hcCCEEEEEEccChHHHHH
Confidence 8888888999999998 87777765543 2366799999988776544
No 101
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.39 E-value=0.057 Score=52.28 Aligned_cols=92 Identities=13% Similarity=-0.072 Sum_probs=46.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCC-CCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIA-YDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQD 268 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 268 (518)
..+++++|.+|+||||++..+... ....=..+.++..... +...+.++......+.+.-.. ....+...+.....+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~-~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF--YKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGE-PGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH--HHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECC-TTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEec-CCCCCHHHHHHHHHH
Confidence 579999999999999999888752 2211112444443321 222233333444433321100 022344444433344
Q ss_pred HhccCcE-EEEEcCCCC
Q 010117 269 YLTAKKY-FIVLDDVFD 284 (518)
Q Consensus 269 ~L~~kr~-LlVLDdvw~ 284 (518)
.++.+.| ++++|-.-.
T Consensus 175 ~~~~~~~D~ViIDTpg~ 191 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTAGR 191 (297)
T ss_dssp HHHHTTCSEEEEECCCS
T ss_pred HHHhCCCCEEEEeCCCC
Confidence 4432333 677777543
No 102
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.33 E-value=0.069 Score=54.58 Aligned_cols=41 Identities=20% Similarity=0.080 Sum_probs=30.4
Q ss_pred hhhhHHHHHHHHhcC-------CCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEG-------PPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
+.--.+++.++|... ....++|.|+|.+|+||||++..+..
T Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 75 VKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp HHHHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 445556666666532 13468999999999999999988775
No 103
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.30 E-value=0.0037 Score=59.52 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 010117 192 VVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~d 213 (518)
-+.|+|+.|+|||+||+.+++.
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3779999999999999999983
No 104
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.24 E-value=0.053 Score=52.64 Aligned_cols=86 Identities=5% Similarity=0.038 Sum_probs=55.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCccccc--ceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCC-ccccCCHHHH-HHHHH
Q 010117 192 VVAILDSSGFEMTAFAADAFNNNHVKFYF--DCHAWVRVSIAYDFGKILDDIINPVMPPSRVS-VIIGEDYQLK-KSILQ 267 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~d~~~~~~F--~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~-~~~~~~~~~~-~~~l~ 267 (518)
++-|.|.+|+||||||.++... ....+ ..++||+.-..++.. .+++++.....- -....+.++. ...+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 7899999999999999888763 33322 357899888888764 256666543210 0123455555 43333
Q ss_pred HH--h-ccCcEEEEEcCCCC
Q 010117 268 DY--L-TAKKYFIVLDDVFD 284 (518)
Q Consensus 268 ~~--L-~~kr~LlVLDdvw~ 284 (518)
.. + +++.-|||+|-|-.
T Consensus 103 ~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTT
T ss_pred HHHHhhccCceEEEEecccc
Confidence 32 3 45678999999865
No 105
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.24 E-value=0.046 Score=53.17 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=29.6
Q ss_pred hhhhHHHHHHHHhcC------CCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEG------PPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~------~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
++.-.+.|.+.|... .....+|.|+|.+|+||||++..+..
T Consensus 80 ~~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 80 LESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp HHHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHH
Confidence 444555566655432 13467999999999999999998876
No 106
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.18 E-value=0.0097 Score=52.61 Aligned_cols=22 Identities=5% Similarity=-0.020 Sum_probs=20.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+|.|+|+.|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 107
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.18 E-value=0.011 Score=52.95 Aligned_cols=24 Identities=13% Similarity=0.076 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
-.+++|+|+.|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 368999999999999999999873
No 108
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.15 E-value=0.037 Score=57.16 Aligned_cols=36 Identities=17% Similarity=0.119 Sum_probs=27.7
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcC
Q 010117 178 ELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 178 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.+++.+..+....+-+.++|++|+|||+||+.+.+.
T Consensus 51 ~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 51 VIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 455556555434466889999999999999999983
No 109
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.15 E-value=0.01 Score=52.04 Aligned_cols=22 Identities=9% Similarity=0.045 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 110
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.14 E-value=0.048 Score=52.15 Aligned_cols=21 Identities=24% Similarity=0.252 Sum_probs=19.8
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q 010117 193 VAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 193 i~I~G~gGvGKTtLA~~v~~d 213 (518)
+.++|+.|+||||||+.+...
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999983
No 111
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.13 E-value=0.028 Score=62.94 Aligned_cols=110 Identities=11% Similarity=0.154 Sum_probs=55.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDY 269 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 269 (518)
...+.|+|+.|+|||++|+.+.+. ....-...+.+..+.-... . ....+.+... .......... +.+.
T Consensus 588 ~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~~~-~----~~s~l~g~~~-~~~G~~~~g~----l~~~ 655 (854)
T 1qvr_A 588 IGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEK-H----AVSRLIGAPP-GYVGYEEGGQ----LTEA 655 (854)
T ss_dssp SEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCCSS-G----GGGGC---------------C----HHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhccch-h----HHHHHcCCCC-CCcCccccch----HHHH
Confidence 458899999999999999999873 2111112233444332221 0 0011110000 0000000011 2222
Q ss_pred hcc-CcEEEEEcCCCC-ChHHHHHHhhhcCCCC-----------CCcEEEEEecc
Q 010117 270 LTA-KKYFIVLDDVFD-DSEIWHDLVEFLPDNQ-----------NGSRVLITLLW 311 (518)
Q Consensus 270 L~~-kr~LlVLDdvw~-~~~~~~~l~~~l~~~~-----------~gskIivTTR~ 311 (518)
+.. ..-+|+||++.. ..+..+.+...+..+. .+..||+||..
T Consensus 656 ~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~ 710 (854)
T 1qvr_A 656 VRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNL 710 (854)
T ss_dssp HHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCT
T ss_pred HHhCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCc
Confidence 322 346899999977 5677777777665331 23447777763
No 112
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.10 E-value=0.024 Score=59.90 Aligned_cols=24 Identities=13% Similarity=0.236 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
...++.++|++|+||||||+.+..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999988
No 113
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.10 E-value=0.056 Score=48.81 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
-.+|+|+|+.|+|||||++.+..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 114
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.09 E-value=0.071 Score=52.37 Aligned_cols=24 Identities=21% Similarity=0.144 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
...+++|+|+.|+||||+++.+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988875
No 115
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.03 E-value=0.011 Score=52.61 Aligned_cols=22 Identities=9% Similarity=0.208 Sum_probs=20.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
++++|+|+.|+|||||++.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999986
No 116
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.98 E-value=0.066 Score=54.59 Aligned_cols=41 Identities=15% Similarity=0.044 Sum_probs=30.0
Q ss_pred hhhhHHHHHHHHhcC-------CCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEG-------PPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
+..-.++|.++|... .....+|.++|.+|+||||++..+..
T Consensus 72 ~~~v~~eL~~~L~~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 72 ISIVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp HHHHHHHHHHHHCSSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccccccccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 445556666666532 13468999999999999999888775
No 117
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.95 E-value=0.013 Score=53.16 Aligned_cols=23 Identities=9% Similarity=0.026 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.++|.|+|+.|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 118
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.94 E-value=0.014 Score=51.60 Aligned_cols=22 Identities=9% Similarity=0.276 Sum_probs=20.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 119
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.94 E-value=0.026 Score=54.42 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=31.5
Q ss_pred hhhhHHHHHHHHhcC---CCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEG---PPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.....++++..++.+ .....+|.|.|++|+||||+|+.+..
T Consensus 12 ~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 12 FENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 555666666666554 23467899999999999999999986
No 120
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.93 E-value=0.037 Score=56.35 Aligned_cols=71 Identities=18% Similarity=0.136 Sum_probs=43.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHH
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQD 268 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 268 (518)
..+=|.++|++|+|||+||+.+.+ .....| +.|..+.-.+ .. .......+...+..
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~--~~~~~~---~~v~~~~l~~--------------~~-----~Ge~e~~ir~lF~~ 260 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVAN--STKAAF---IRVNGSEFVH--------------KY-----LGEGPRMVRDVFRL 260 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH--HHTCEE---EEEEGGGTCC--------------SS-----CSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH--HhCCCe---EEEecchhhc--------------cc-----cchhHHHHHHHHHH
Confidence 456689999999999999999998 444443 3333332211 10 11122233333334
Q ss_pred HhccCcEEEEEcCCC
Q 010117 269 YLTAKKYFIVLDDVF 283 (518)
Q Consensus 269 ~L~~kr~LlVLDdvw 283 (518)
.-....++|++|++.
T Consensus 261 A~~~aP~IifiDEiD 275 (428)
T 4b4t_K 261 ARENAPSIIFIDEVD 275 (428)
T ss_dssp HHHTCSEEEEEECTH
T ss_pred HHHcCCCeeechhhh
Confidence 445578999999985
No 121
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.88 E-value=0.043 Score=60.48 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=33.0
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
++..++.+++.|.... ..-+.++|++|+|||++|+.+.+
T Consensus 185 ~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 185 RSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp CHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred chHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 8999999999987643 23467999999999999999887
No 122
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.85 E-value=0.12 Score=53.39 Aligned_cols=38 Identities=13% Similarity=0.080 Sum_probs=28.3
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
-...++.+...+..++ ..+.|.|.+|+||||++..+..
T Consensus 30 Q~~av~~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~~~ 67 (459)
T 3upu_A 30 QKNAFNIVMKAIKEKK---HHVTINGPAGTGATTLTKFIIE 67 (459)
T ss_dssp HHHHHHHHHHHHHSSS---CEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC---CEEEEEeCCCCCHHHHHHHHHH
Confidence 3444555555665543 3899999999999999988876
No 123
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.85 E-value=0.011 Score=51.94 Aligned_cols=22 Identities=5% Similarity=0.083 Sum_probs=20.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+|+|+|+.|+|||||++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 124
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.85 E-value=0.12 Score=51.28 Aligned_cols=125 Identities=14% Similarity=0.110 Sum_probs=67.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCccc---ccc------------eEEEEEcCCCC------CHH--------------
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKF---YFD------------CHAWVRVSIAY------DFG-------------- 235 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~---~F~------------~~~wv~vs~~~------~~~-------------- 235 (518)
.+++|+|+.|+|||||.+.+.--..... .|+ .+.+| .+++ ++.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v--~Q~~~l~~~ltv~eni~~~l~~~~~~~ 119 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLV--FQNYALFQHMTVYDNVSFGLREKRVPK 119 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEE--CGGGCCCTTSCHHHHHHHHHHHTTCCH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEE--ecCcccCCCCCHHHHHHHHHHHcCCCH
Confidence 5899999999999999999875211100 011 12222 2211 111
Q ss_pred ----HHHHHHHhhcCCCCC-CCccccCCHHHHH-HHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC--CCCCcEE
Q 010117 236 ----KILDDIINPVMPPSR-VSVIIGEDYQLKK-SILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD--NQNGSRV 305 (518)
Q Consensus 236 ----~i~~~i~~~l~~~~~-~~~~~~~~~~~~~-~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~--~~~gskI 305 (518)
+-..++++.++.... ...+...+..+.+ -.|...|..+.=+|+||.--. |...-..+...+.. ...|..|
T Consensus 120 ~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv 199 (355)
T 1z47_A 120 DEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTS 199 (355)
T ss_dssp HHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 223445555554321 1112333444433 356777777888999999766 43332333222221 1126678
Q ss_pred EEEecchhhhhh
Q 010117 306 LITLLWFELQKG 317 (518)
Q Consensus 306 ivTTR~~~va~~ 317 (518)
|++|.+...+..
T Consensus 200 i~vTHd~~~a~~ 211 (355)
T 1z47_A 200 VFVTHDQEEALE 211 (355)
T ss_dssp EEECSCHHHHHH
T ss_pred EEECCCHHHHHH
Confidence 889988766543
No 125
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.84 E-value=0.072 Score=55.44 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=19.8
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q 010117 193 VAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 193 i~I~G~gGvGKTtLA~~v~~d 213 (518)
+.|+|+.|+||||||+.+.+.
T Consensus 67 vLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999984
No 126
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.83 E-value=0.09 Score=53.66 Aligned_cols=41 Identities=17% Similarity=0.119 Sum_probs=29.5
Q ss_pred hhhhHHHHHHHHhcC------CCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEG------PPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~------~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
+..-.++|.+.|... .....+|.++|.+|+||||++..+..
T Consensus 76 ~~~l~~eL~~~L~~~~~~~~~~~~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 76 IKIVYEELTKFLGTEAKPIEIKEKPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp HHHHHHHHHHHTTSSCCCCCCCSSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccccccCCCCeEEEEECcCCCCHHHHHHHHHH
Confidence 445555666655431 12478999999999999999887765
No 127
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.82 E-value=0.043 Score=56.00 Aligned_cols=72 Identities=18% Similarity=0.169 Sum_probs=43.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHH
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQD 268 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 268 (518)
..+=|.++|++|+|||+||+.+.+ .....| +.+..+.-.+ .. .......+...+..
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~--e~~~~~---~~v~~s~l~s--------------k~-----~Gese~~ir~~F~~ 269 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAA--TIGANF---IFSPASGIVD--------------KY-----IGESARIIREMFAY 269 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGTCC--------------SS-----SSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH--HhCCCE---EEEehhhhcc--------------cc-----chHHHHHHHHHHHH
Confidence 457789999999999999999998 444333 2333332211 11 11122223333333
Q ss_pred HhccCcEEEEEcCCCC
Q 010117 269 YLTAKKYFIVLDDVFD 284 (518)
Q Consensus 269 ~L~~kr~LlVLDdvw~ 284 (518)
.-....++|++|++..
T Consensus 270 A~~~~P~IifiDEiDa 285 (437)
T 4b4t_L 270 AKEHEPCIIFMDEVDA 285 (437)
T ss_dssp HHHSCSEEEEEECCCS
T ss_pred HHhcCCceeeeecccc
Confidence 3455789999999964
No 128
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.80 E-value=0.16 Score=50.57 Aligned_cols=124 Identities=11% Similarity=0.041 Sum_probs=67.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCccc---cc------------ceEEEEEcCCCC------CHH--------------
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKF---YF------------DCHAWVRVSIAY------DFG-------------- 235 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~---~F------------~~~~wv~vs~~~------~~~-------------- 235 (518)
.+++|+|+.|+|||||.+.+.--..... .| ..+.+| .|++ ++.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v--~Q~~~l~~~ltv~eni~~~~~~~~~~~ 107 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLV--FQNWALYPHMTVYKNIAFPLELRKAPR 107 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEE--CTTCCCCTTSCHHHHHHHHHHHTTCCH
T ss_pred CEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEE--ecCcccCCCCCHHHHHHHHHHhcCCCH
Confidence 5899999999999999999875311100 01 112232 2221 111
Q ss_pred ----HHHHHHHhhcCCCCCC-CccccCCHHHHH-HHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC--CCCCcEE
Q 010117 236 ----KILDDIINPVMPPSRV-SVIIGEDYQLKK-SILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD--NQNGSRV 305 (518)
Q Consensus 236 ----~i~~~i~~~l~~~~~~-~~~~~~~~~~~~-~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~--~~~gskI 305 (518)
+-..++++.++..... ..+...+..+.+ -.|...|..+.=+|+||.--. |...-..+...+.. ...|..|
T Consensus 108 ~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv 187 (362)
T 2it1_A 108 EEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITT 187 (362)
T ss_dssp HHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 1234455555543321 122334444433 357777778888999999755 33332333322221 1126678
Q ss_pred EEEecchhhhh
Q 010117 306 LITLLWFELQK 316 (518)
Q Consensus 306 ivTTR~~~va~ 316 (518)
|++|.+...+.
T Consensus 188 i~vTHd~~~a~ 198 (362)
T 2it1_A 188 VYVTHDQAEAL 198 (362)
T ss_dssp EEEESCHHHHH
T ss_pred EEECCCHHHHH
Confidence 88888866554
No 129
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.76 E-value=0.022 Score=51.29 Aligned_cols=120 Identities=12% Similarity=-0.041 Sum_probs=55.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCC---CCCHHHHHHHHHh---hcCCCCC-CCcc---ccCCHH
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSI---AYDFGKILDDIIN---PVMPPSR-VSVI---IGEDYQ 260 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~---~~~~~~i~~~i~~---~l~~~~~-~~~~---~~~~~~ 260 (518)
..|-|++-.|.||||+|--+.- +.-.+=-.+.++...+ ......++..+-- ..+.... .... +.....
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 3455555567999999876654 2222212244443333 2233344433300 0000000 0000 001122
Q ss_pred HHHHHHHHHhccCcE-EEEEcCCCC----ChHHHHHHhhhcCCCCCCcEEEEEecch
Q 010117 261 LKKSILQDYLTAKKY-FIVLDDVFD----DSEIWHDLVEFLPDNQNGSRVLITLLWF 312 (518)
Q Consensus 261 ~~~~~l~~~L~~kr~-LlVLDdvw~----~~~~~~~l~~~l~~~~~gskIivTTR~~ 312 (518)
......++.+.+.+| |||||++-. .--..+.+...+.......-||+|+|..
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 234445556655555 999999832 0111223333333333456799999964
No 130
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.74 E-value=0.025 Score=56.90 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=43.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHH
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQD 268 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 268 (518)
..+=|-++|++|+|||.||+.+.+ +....| +.|..+.-.+ .. .......+...+..
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l~s--------------k~-----vGese~~vr~lF~~ 236 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAH--HTDCKF---IRVSGAELVQ--------------KY-----IGEGSRMVRELFVM 236 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHH--HHTCEE---EEEEGGGGSC--------------SS-----TTHHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHH--hhCCCc---eEEEhHHhhc--------------cc-----cchHHHHHHHHHHH
Confidence 456688999999999999999998 444444 3333332211 10 11122223333333
Q ss_pred HhccCcEEEEEcCCCC
Q 010117 269 YLTAKKYFIVLDDVFD 284 (518)
Q Consensus 269 ~L~~kr~LlVLDdvw~ 284 (518)
.-....++|.+|++..
T Consensus 237 Ar~~aP~IIFiDEiDa 252 (405)
T 4b4t_J 237 AREHAPSIIFMDEIDS 252 (405)
T ss_dssp HHHTCSEEEEEESSSC
T ss_pred HHHhCCceEeeecchh
Confidence 3355789999999975
No 131
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.74 E-value=0.12 Score=51.09 Aligned_cols=124 Identities=17% Similarity=0.086 Sum_probs=67.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCccc---ccc------------eEEEEEcCCCC------CHH--------------
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKF---YFD------------CHAWVRVSIAY------DFG-------------- 235 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~---~F~------------~~~wv~vs~~~------~~~-------------- 235 (518)
.+++|+|+.|+|||||.+.+.--..-.. .|+ .+.+| .+++ ++.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v--~Q~~~l~~~ltv~enl~~~~~~~~~~~ 104 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV--YQNYSLFPHMNVKKNLEFGMRMKKIKD 104 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE--CTTCCCCTTSCHHHHHHHHHHHHCCCC
T ss_pred CEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEE--ecCcccCCCCCHHHHHHHHHHHcCCCH
Confidence 5899999999999999999975321100 011 11222 2221 221
Q ss_pred -HHHHHHHhhcCCCCCC-CccccCCHHHHH-HHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC--CCCCcEEEEE
Q 010117 236 -KILDDIINPVMPPSRV-SVIIGEDYQLKK-SILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD--NQNGSRVLIT 308 (518)
Q Consensus 236 -~i~~~i~~~l~~~~~~-~~~~~~~~~~~~-~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~--~~~gskIivT 308 (518)
+-..++++.++..... ..+...+..+.+ -.|...|..+.=+|+||.--. |...-..+...+.. ...|..||++
T Consensus 105 ~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~v 184 (348)
T 3d31_A 105 PKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHI 184 (348)
T ss_dssp HHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 1234455555543321 122334444433 356777777888999999766 43333333322221 1226678888
Q ss_pred ecchhhhh
Q 010117 309 LLWFELQK 316 (518)
Q Consensus 309 TR~~~va~ 316 (518)
|.+...+.
T Consensus 185 THd~~~~~ 192 (348)
T 3d31_A 185 THDQTEAR 192 (348)
T ss_dssp ESCHHHHH
T ss_pred eCCHHHHH
Confidence 88866544
No 132
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.72 E-value=0.028 Score=53.05 Aligned_cols=41 Identities=15% Similarity=0.111 Sum_probs=31.6
Q ss_pred hhhhHHHHHHHHhcC---CCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEG---PPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+...+.+++.+..+ .....+|.|+|++|+||||+|+.+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 11 FKHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 555666666666654 23467899999999999999999987
No 133
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.72 E-value=0.063 Score=55.22 Aligned_cols=105 Identities=13% Similarity=0.181 Sum_probs=63.6
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCC-CHHHHHHHHHhhcCCC-------C
Q 010117 178 ELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAY-DFGKILDDIINPVMPP-------S 249 (518)
Q Consensus 178 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~-------~ 249 (518)
++++.|..=. +=..++|+|..|+|||+|++.+.++. .+.+-+.++++-+++.. ...++..++...-... .
T Consensus 154 rvID~l~pig-kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~r 231 (498)
T 1fx0_B 154 KVVNLLAPYR-RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESK 231 (498)
T ss_dssp TTHHHHSCCC-TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCC
T ss_pred eEeeeecccc-cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccc
Confidence 3455555421 23568999999999999999988741 22345678888888876 4567777776542211 0
Q ss_pred CC--CccccC------CHHHHHHHHHHHhc---cCcEEEEEcCCCC
Q 010117 250 RV--SVIIGE------DYQLKKSILQDYLT---AKKYFIVLDDVFD 284 (518)
Q Consensus 250 ~~--~~~~~~------~~~~~~~~l~~~L~---~kr~LlVLDdvw~ 284 (518)
.. ....+. -.....-.+.++++ |+..||++||+-.
T Consensus 232 tvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 232 VALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp EEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 00 000111 11222334556664 5899999999854
No 134
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.72 E-value=0.018 Score=52.17 Aligned_cols=23 Identities=17% Similarity=0.079 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
-.+|.|+|+.|.|||||++.+..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999999987
No 135
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.69 E-value=0.016 Score=52.46 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=20.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999986
No 136
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.68 E-value=0.053 Score=55.43 Aligned_cols=73 Identities=18% Similarity=0.156 Sum_probs=44.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHH
Q 010117 188 PRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQ 267 (518)
Q Consensus 188 ~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 267 (518)
...+=|.++|++|+|||+||+.+.+ +....| +.|..+.- .... .......+...+.
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f---i~vs~s~L--------------~sk~-----vGesek~ir~lF~ 296 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVAN--RTDATF---IRVIGSEL--------------VQKY-----VGEGARMVRELFE 296 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGG--------------CCCS-----SSHHHHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe---EEEEhHHh--------------hccc-----CCHHHHHHHHHHH
Confidence 3567788999999999999999998 444444 23333221 1111 1112223333334
Q ss_pred HHhccCcEEEEEcCCCC
Q 010117 268 DYLTAKKYFIVLDDVFD 284 (518)
Q Consensus 268 ~~L~~kr~LlVLDdvw~ 284 (518)
..-....++|++|++..
T Consensus 297 ~Ar~~aP~IIfiDEiDa 313 (467)
T 4b4t_H 297 MARTKKACIIFFDEIDA 313 (467)
T ss_dssp HHHHTCSEEEEEECCTT
T ss_pred HHHhcCCceEeeccccc
Confidence 44455789999999874
No 137
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.65 E-value=0.016 Score=51.52 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+.|.|+|+.|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999986
No 138
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.64 E-value=0.2 Score=49.67 Aligned_cols=123 Identities=13% Similarity=0.104 Sum_probs=67.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCccc---ccc----------------eEEEEEcCCCC------CH-----------
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKF---YFD----------------CHAWVRVSIAY------DF----------- 234 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~---~F~----------------~~~wv~vs~~~------~~----------- 234 (518)
.+++|+|+.|+|||||.+.+.--..-.. .|+ .+.+| .|++ ++
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~v--fQ~~~l~p~ltV~eni~~~l~~~ 108 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYL--VQEGVLFPHLTVYRNIAYGLGNG 108 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEE--CTTCCCCTTSCHHHHHHTTSTTS
T ss_pred CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEE--eCCCcCCCCCCHHHHHHHHHHHc
Confidence 5899999999999999999875211100 011 12222 1111 11
Q ss_pred -------HHHHHHHHhhcCCCCCC-CccccCCHHHHH-HHHHHHhccCcEEEEEcCCCC--ChHHH----HHHhhhcCCC
Q 010117 235 -------GKILDDIINPVMPPSRV-SVIIGEDYQLKK-SILQDYLTAKKYFIVLDDVFD--DSEIW----HDLVEFLPDN 299 (518)
Q Consensus 235 -------~~i~~~i~~~l~~~~~~-~~~~~~~~~~~~-~~l~~~L~~kr~LlVLDdvw~--~~~~~----~~l~~~l~~~ 299 (518)
.+-..++++.++..... ..+...+..+.+ -.|...|..+.=+|+||.--. |...- +.+.....
T Consensus 109 ~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~-- 186 (359)
T 3fvq_A 109 KGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALR-- 186 (359)
T ss_dssp SCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH--
T ss_pred CCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--
Confidence 12234455555443211 112333333333 356677777788999999766 43322 33333222
Q ss_pred CCCcEEEEEecchhhhhh
Q 010117 300 QNGSRVLITLLWFELQKG 317 (518)
Q Consensus 300 ~~gskIivTTR~~~va~~ 317 (518)
..|..||++|.+...|..
T Consensus 187 ~~g~tvi~vTHd~~ea~~ 204 (359)
T 3fvq_A 187 ANGKSAVFVSHDREEALQ 204 (359)
T ss_dssp HTTCEEEEECCCHHHHHH
T ss_pred hCCCEEEEEeCCHHHHHH
Confidence 236778899988766544
No 139
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.62 E-value=0.075 Score=51.63 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
-.+++|+|+.|.|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 36899999999999999999875
No 140
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.61 E-value=0.022 Score=56.84 Aligned_cols=53 Identities=9% Similarity=-0.078 Sum_probs=34.9
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcc---cccceEEEEEcCCCCC
Q 010117 177 EELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVK---FYFDCHAWVRVSIAYD 233 (518)
Q Consensus 177 ~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~---~~F~~~~wv~vs~~~~ 233 (518)
-++++.+..-. .-..++|+|..|+|||||++.+.+ .+. ..+.+ +++-+++...
T Consensus 162 iraID~~~pi~-rGQr~~IvG~sG~GKTtLl~~Iar--~i~~~~~~v~~-I~~lIGER~~ 217 (422)
T 3ice_A 162 ARVLDLASPIG-RGQRGLIVAPPKAGKTMLLQNIAQ--SIAYNHPDCVL-MVLLIDERPE 217 (422)
T ss_dssp HHHHHHHSCCB-TTCEEEEECCSSSSHHHHHHHHHH--HHHHHCTTSEE-EEEEESSCHH
T ss_pred ceeeeeeeeec-CCcEEEEecCCCCChhHHHHHHHH--HHhhcCCCeeE-EEEEecCChH
Confidence 35566665432 235899999999999999998876 222 12343 3577776643
No 141
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.61 E-value=0.018 Score=51.38 Aligned_cols=22 Identities=9% Similarity=0.089 Sum_probs=20.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 142
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.60 E-value=0.036 Score=56.52 Aligned_cols=31 Identities=13% Similarity=0.056 Sum_probs=24.8
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHcCCCccccc
Q 010117 188 PRLSVVAILDSSGFEMTAFAADAFNNNHVKFYF 220 (518)
Q Consensus 188 ~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F 220 (518)
...+=|-++|++|+|||.||+.+.+ +....|
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~--e~~~~f 243 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAA--QTNATF 243 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHH--HhCCCE
Confidence 3457789999999999999999998 444433
No 143
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.60 E-value=0.017 Score=51.02 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
-.+++|+|+.|+|||||++..+.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 36899999999999999997543
No 144
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.58 E-value=0.019 Score=50.56 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
-.+|.|+|+.|+||||+++.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 145
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.58 E-value=0.14 Score=51.62 Aligned_cols=94 Identities=6% Similarity=0.006 Sum_probs=53.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCccc----ccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC-----CccccCCHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKF----YFDCHAWVRVSIAYDFGKILDDIINPVMPPSRV-----SVIIGEDYQ 260 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-----~~~~~~~~~ 260 (518)
-.++.|+|..|+|||||+..+.-...... .-..++|++....++..++. .+.+.++..... ......+.+
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCCChHhHhhcEEEeccCChH
Confidence 46999999999999999997653212211 12358888877777665543 355555432110 000112222
Q ss_pred ---HHHHHHHHHhc-cCcEEEEEcCCCC
Q 010117 261 ---LKKSILQDYLT-AKKYFIVLDDVFD 284 (518)
Q Consensus 261 ---~~~~~l~~~L~-~kr~LlVLDdvw~ 284 (518)
+....+...+. .+.-+||+|.+-.
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 22333334443 3567999999754
No 146
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.58 E-value=0.15 Score=50.94 Aligned_cols=125 Identities=9% Similarity=0.062 Sum_probs=67.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCccc---ccc------------eEEEEEcCCCC------CH---------------
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKF---YFD------------CHAWVRVSIAY------DF--------------- 234 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~---~F~------------~~~wv~vs~~~------~~--------------- 234 (518)
.+++|+|+.|+|||||.+.+.--..... .|+ .+.+| .|++ ++
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~V--fQ~~~l~p~ltV~eni~~~~~~~~~~~ 107 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV--FQSYALYPHLSVAENMSFGLKLAGAKK 107 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEE--CTTCCCCTTSCHHHHHTHHHHHTTCCH
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEE--ecCCcCCCCCCHHHHHHHHHHHcCCCH
Confidence 5899999999999999999975321100 011 12222 2221 11
Q ss_pred ---HHHHHHHHhhcCCCCCC-CccccCCHHHHH-HHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC--CCCCcEE
Q 010117 235 ---GKILDDIINPVMPPSRV-SVIIGEDYQLKK-SILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD--NQNGSRV 305 (518)
Q Consensus 235 ---~~i~~~i~~~l~~~~~~-~~~~~~~~~~~~-~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~--~~~gskI 305 (518)
.+-..++++.++..... ..+...+..+.+ -.|...|..+.=+|+||.--. |...-..+...+.. ...|..|
T Consensus 108 ~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~ti 187 (381)
T 3rlf_A 108 EVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTM 187 (381)
T ss_dssp HHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEE
T ss_pred HHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 12234555555543211 112333444433 356667777777999999766 43333333333221 1226678
Q ss_pred EEEecchhhhhh
Q 010117 306 LITLLWFELQKG 317 (518)
Q Consensus 306 ivTTR~~~va~~ 317 (518)
|++|.+...+..
T Consensus 188 i~vTHd~~ea~~ 199 (381)
T 3rlf_A 188 IYVTHDQVEAMT 199 (381)
T ss_dssp EEECSCHHHHHH
T ss_pred EEEECCHHHHHH
Confidence 888888765543
No 147
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.55 E-value=0.02 Score=51.15 Aligned_cols=22 Identities=9% Similarity=0.073 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 148
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.54 E-value=0.015 Score=52.28 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=19.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
+.|.|+|+.|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999886
No 149
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.51 E-value=0.053 Score=55.54 Aligned_cols=105 Identities=14% Similarity=0.219 Sum_probs=61.6
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCC-CHHHHHHHHHhhcCCC------CC
Q 010117 178 ELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAY-DFGKILDDIINPVMPP------SR 250 (518)
Q Consensus 178 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~------~~ 250 (518)
++++.|..=. +=..++|+|..|+|||+|++.+.++. .+.+-+.++++-+++.. .+.++++++...-... ..
T Consensus 142 r~ID~l~pig-kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rt 219 (482)
T 2ck3_D 142 KVVDLLAPYA-KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKV 219 (482)
T ss_dssp HHHHHHSCEE-TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCE
T ss_pred EEEecccccc-cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceE
Confidence 4556665321 22579999999999999999988742 12334567788888775 4566777776542211 00
Q ss_pred C--CccccCCH-H-----HHHHHHHHHh---ccCcEEEEEcCCCC
Q 010117 251 V--SVIIGEDY-Q-----LKKSILQDYL---TAKKYFIVLDDVFD 284 (518)
Q Consensus 251 ~--~~~~~~~~-~-----~~~~~l~~~L---~~kr~LlVLDdvw~ 284 (518)
. ....+... . ...-.+.+++ +|+..||++||+-.
T Consensus 220 vvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR 264 (482)
T 2ck3_D 220 ALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR 264 (482)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 0 00011111 1 1122344454 36899999999853
No 150
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.49 E-value=0.014 Score=52.80 Aligned_cols=23 Identities=9% Similarity=0.144 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
..+|.|+|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999877
No 151
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.48 E-value=0.022 Score=50.93 Aligned_cols=23 Identities=4% Similarity=0.057 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
..+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 152
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.47 E-value=0.022 Score=51.91 Aligned_cols=23 Identities=17% Similarity=0.089 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
..+|+|+|..|+|||||++.+..
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 153
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.46 E-value=0.016 Score=51.82 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=20.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999986
No 154
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.44 E-value=0.048 Score=59.93 Aligned_cols=72 Identities=14% Similarity=0.176 Sum_probs=45.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHH
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQD 268 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 268 (518)
..+=|.++|++|+|||+||+.+.+ +...+| +.|+.+ + ++... .......+...+..
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~--elg~~~---~~v~~~------~----l~sk~---------~gese~~lr~lF~~ 292 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLINGP------E----IMSKL---------AGESESNLRKAFEE 292 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHT--TTTCEE---EEEEHH------H----HHSSC---------TTHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH--HhCCeE---EEEEhH------H----hhccc---------chHHHHHHHHHHHH
Confidence 456789999999999999999999 444443 233221 1 11110 11223334444555
Q ss_pred HhccCcEEEEEcCCCC
Q 010117 269 YLTAKKYFIVLDDVFD 284 (518)
Q Consensus 269 ~L~~kr~LlVLDdvw~ 284 (518)
......++|++|++..
T Consensus 293 A~~~~PsIIfIDEiDa 308 (806)
T 3cf2_A 293 AEKNAPAIIFIDELDA 308 (806)
T ss_dssp HTTSCSEEEEEESGGG
T ss_pred HHHcCCeEEEEehhcc
Confidence 5566789999999864
No 155
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.44 E-value=0.16 Score=50.36 Aligned_cols=125 Identities=14% Similarity=0.044 Sum_probs=66.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCccc---ccc------------eEEEEEcCCCC------CHH--------------
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKF---YFD------------CHAWVRVSIAY------DFG-------------- 235 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~---~F~------------~~~wv~vs~~~------~~~-------------- 235 (518)
.+++|+|+.|+|||||.+.+.--..... .|+ .+.+| .+++ ++.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v--~Q~~~l~~~ltv~eni~~~~~~~~~~~ 107 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMV--FQNYALYPHMTVFENIAFPLRARRISK 107 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEE--CSSCCCCTTSCHHHHHHGGGSSSCSHH
T ss_pred CEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEE--ecCcccCCCCCHHHHHHHHHHhcCCCH
Confidence 5899999999999999999875211100 010 12222 2221 111
Q ss_pred ----HHHHHHHhhcCCCCC-CCccccCCHHHHH-HHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC--CCCCcEE
Q 010117 236 ----KILDDIINPVMPPSR-VSVIIGEDYQLKK-SILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD--NQNGSRV 305 (518)
Q Consensus 236 ----~i~~~i~~~l~~~~~-~~~~~~~~~~~~~-~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~--~~~gskI 305 (518)
+-..++++.++.... ...+...+..+.+ -.|...|..+.=+|+||.--. |...-..+...+.. ...|..|
T Consensus 108 ~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv 187 (359)
T 2yyz_A 108 DEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITS 187 (359)
T ss_dssp HHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEE
T ss_pred HHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 123445555554321 1112333444433 356777777788999999766 43332223222221 1126678
Q ss_pred EEEecchhhhhh
Q 010117 306 LITLLWFELQKG 317 (518)
Q Consensus 306 ivTTR~~~va~~ 317 (518)
|++|.+...+..
T Consensus 188 i~vTHd~~~~~~ 199 (359)
T 2yyz_A 188 VYVTHDQAEAMT 199 (359)
T ss_dssp EEEESCHHHHHH
T ss_pred EEEcCCHHHHHH
Confidence 888888765543
No 156
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.42 E-value=0.021 Score=50.92 Aligned_cols=22 Identities=14% Similarity=0.218 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 010117 192 VVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.++|+|+.|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998763
No 157
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.38 E-value=0.02 Score=52.30 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
-.+|+|+|+.|+|||||++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 468999999999999999999873
No 158
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.37 E-value=0.02 Score=50.98 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=20.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+|.|.|+.|+||||+++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999877
No 159
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.36 E-value=0.025 Score=51.35 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
...+|+|+|+.|+||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 160
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.34 E-value=0.021 Score=51.54 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 010117 192 VVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~ 212 (518)
+|+|.|+.|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999987
No 161
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.33 E-value=0.13 Score=50.18 Aligned_cols=52 Identities=19% Similarity=0.118 Sum_probs=35.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhh
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINP 244 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 244 (518)
.-.++.|.|.+|+||||||..+..+...+. ..++|++.- .+..++...++..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 346899999999999999998876422222 457777654 4556666666544
No 162
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.31 E-value=0.11 Score=52.91 Aligned_cols=23 Identities=17% Similarity=-0.002 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
..+|.|+|.+|+||||++..+..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999988876
No 163
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.30 E-value=0.043 Score=50.36 Aligned_cols=40 Identities=15% Similarity=0.121 Sum_probs=29.1
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.++..+.+...+... ...+|.|+|.+|+|||||+..+...
T Consensus 22 ~~~~a~~~r~~~~~~--~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 22 NKRLADKNRKLLNKH--GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHHHHHT--TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhC--CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 334445555555433 4788999999999999999988864
No 164
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.28 E-value=0.022 Score=51.59 Aligned_cols=23 Identities=13% Similarity=0.268 Sum_probs=21.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.+|+|+|+.|+||||+++.+...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999873
No 165
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.28 E-value=0.021 Score=51.69 Aligned_cols=22 Identities=9% Similarity=0.045 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999886
No 166
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.27 E-value=0.026 Score=50.88 Aligned_cols=25 Identities=16% Similarity=0.077 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHc
Q 010117 188 PRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 188 ~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+..+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999987
No 167
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.27 E-value=0.075 Score=58.89 Aligned_cols=88 Identities=13% Similarity=0.152 Sum_probs=50.2
Q ss_pred hhhhHHHHHHHHhc-----------CCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHH
Q 010117 172 FERGREELFDLLIE-----------GPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDD 240 (518)
Q Consensus 172 r~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~ 240 (518)
.+..+++|.+++.. +-.....|.|+|+.|+||||||+.+.+ .....| +.+..+ +
T Consensus 209 ~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~--~l~~~~---i~v~~~------~---- 273 (806)
T 1ypw_A 209 CRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLINGP------E---- 273 (806)
T ss_dssp CSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH--TTTCEE---EEEEHH------H----
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH--HcCCcE---EEEEch------H----
Confidence 45555555555532 112345799999999999999999998 444333 223211 1
Q ss_pred HHhhcCCCCCCCccccCCHHHHHHHHHHHhccCcEEEEEcCCC
Q 010117 241 IINPVMPPSRVSVIIGEDYQLKKSILQDYLTAKKYFIVLDDVF 283 (518)
Q Consensus 241 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw 283 (518)
+. ... .......+...+.........++++|++.
T Consensus 274 l~----~~~-----~g~~~~~l~~vf~~a~~~~p~il~iDEid 307 (806)
T 1ypw_A 274 IM----SKL-----AGESESNLRKAFEEAEKNAPAIIFIDELD 307 (806)
T ss_dssp HS----SSS-----TTHHHHHHHHHHHHHHHHCSEEEEEESGG
T ss_pred hh----hhh-----hhhHHHHHHHHHHHHHhcCCcEEEeccHH
Confidence 11 110 11112233344444445578899999994
No 168
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.25 E-value=0.023 Score=53.63 Aligned_cols=22 Identities=14% Similarity=-0.006 Sum_probs=20.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
++|.|+|+.|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 5789999999999999999976
No 169
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.24 E-value=0.098 Score=58.56 Aligned_cols=52 Identities=17% Similarity=0.259 Sum_probs=34.3
Q ss_pred ccCcEEEEEcCCCC--ChHHHHHH----hhhcCCCCCCcEEEEEecchhhhhhccCCCc
Q 010117 271 TAKKYFIVLDDVFD--DSEIWHDL----VEFLPDNQNGSRVLITLLWFELQKGEKIQPD 323 (518)
Q Consensus 271 ~~kr~LlVLDdvw~--~~~~~~~l----~~~l~~~~~gskIivTTR~~~va~~~~~~Pl 323 (518)
..++-||+||..-. ++..-..+ ...+.. ..|+.||++|...+++..+...|.
T Consensus 739 a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~-~~g~~vl~aTH~~el~~lad~~~~ 796 (934)
T 3thx_A 739 ATKDSLIIIDELGRGTSTYDGFGLAWAISEYIAT-KIGAFCMFATHFHELTALANQIPT 796 (934)
T ss_dssp CCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHH-TTCCEEEEEESCGGGGGGGGTCTT
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCCEEEEEcCcHHHHHHhcccce
Confidence 46778999999976 33322222 222321 248899999999999887755554
No 170
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.22 E-value=0.12 Score=51.86 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=20.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+++|+|+.|+|||||.+.+..
T Consensus 48 e~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHhC
Confidence 5899999999999999999975
No 171
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.21 E-value=0.18 Score=46.64 Aligned_cols=90 Identities=14% Similarity=0.034 Sum_probs=50.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC------------------
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRV------------------ 251 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~------------------ 251 (518)
-.++.|.|.+|+||||||.++... ....=..++|++.... ..++...+ ..++.....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~~--~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~~~~~~ 97 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEEH--PVQVRQNM-AQFGWDVKPYEEKGMFAMVDAFTAGIG 97 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSSC--HHHHHHHH-HTTTCCCHHHHHHTSEEEEECSTTTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccCC--HHHHHHHH-HHcCCCHHHHhhCCcEEEEecchhhcc
Confidence 368999999999999998877652 1111134677765443 34444333 222221000
Q ss_pred -----C---ccccCCHHHHHHHHHHHhcc-CcEEEEEcCCCC
Q 010117 252 -----S---VIIGEDYQLKKSILQDYLTA-KKYFIVLDDVFD 284 (518)
Q Consensus 252 -----~---~~~~~~~~~~~~~l~~~L~~-kr~LlVLDdvw~ 284 (518)
. .....+..++...+.+.++. +.-++|+|.+-.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~ 139 (247)
T 2dr3_A 98 KSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTT 139 (247)
T ss_dssp C--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGG
T ss_pred cccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchH
Confidence 0 00123555666677766643 445899998854
No 172
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.20 E-value=0.02 Score=51.93 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999876
No 173
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.19 E-value=0.084 Score=58.15 Aligned_cols=93 Identities=10% Similarity=0.133 Sum_probs=48.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDY 269 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 269 (518)
...+.++|+.|+|||++|+.+.+ .... ..+-+..+.-.+.. .+...++.+. ..... .....+.+.
T Consensus 488 ~~~~ll~G~~GtGKT~la~~la~--~l~~---~~~~i~~s~~~~~~----~~~~l~g~~~-----g~~g~-~~~~~l~~~ 552 (758)
T 1r6b_X 488 VGSFLFAGPTGVGKTEVTVQLSK--ALGI---ELLRFDMSEYMERH----TVSRLIGAPP-----GYVGF-DQGGLLTDA 552 (758)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH--HHTC---EEEEEEGGGCSSSS----CCSSSCCCCS-----CSHHH-HHTTHHHHH
T ss_pred ceEEEEECCCCCcHHHHHHHHHH--HhcC---CEEEEechhhcchh----hHhhhcCCCC-----CCcCc-cccchHHHH
Confidence 45789999999999999999988 3322 22334444322110 0000111110 10000 011122333
Q ss_pred hc-cCcEEEEEcCCCC-ChHHHHHHhhhcC
Q 010117 270 LT-AKKYFIVLDDVFD-DSEIWHDLVEFLP 297 (518)
Q Consensus 270 L~-~kr~LlVLDdvw~-~~~~~~~l~~~l~ 297 (518)
++ .....|+||++.. ..+..+.+...+.
T Consensus 553 ~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le 582 (758)
T 1r6b_X 553 VIKHPHAVLLLDEIEKAHPDVFNILLQVMD 582 (758)
T ss_dssp HHHCSSEEEEEETGGGSCHHHHHHHHHHHH
T ss_pred HHhCCCcEEEEeCccccCHHHHHHHHHHhc
Confidence 32 3467999999987 4666666665554
No 174
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.16 E-value=0.021 Score=50.63 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.++|.|+|+.|+||||+|+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 46789999999999999999886
No 175
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.16 E-value=0.024 Score=49.54 Aligned_cols=24 Identities=8% Similarity=0.095 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
...+|.|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999887
No 176
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.16 E-value=0.024 Score=52.22 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=20.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 177
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.14 E-value=0.048 Score=54.25 Aligned_cols=37 Identities=14% Similarity=0.051 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 176 REELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 176 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
...+++.+.....+..+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4455555554445678999999999999999988765
No 178
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.11 E-value=0.028 Score=54.99 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
+.+||+|.|-|||||||.|..+..
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCccCHHHHHHHHHH
Confidence 579999999999999998876654
No 179
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.10 E-value=0.029 Score=50.90 Aligned_cols=22 Identities=18% Similarity=0.105 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 180
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.09 E-value=0.02 Score=51.96 Aligned_cols=24 Identities=8% Similarity=0.235 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.++|.|+|+.|+|||||++.+...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999873
No 181
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.06 E-value=0.021 Score=50.34 Aligned_cols=22 Identities=9% Similarity=0.083 Sum_probs=20.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
+.|.|+|+.|+||||+|+.+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 182
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.03 E-value=0.029 Score=50.07 Aligned_cols=23 Identities=22% Similarity=0.146 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
..+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998876
No 183
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.02 E-value=0.027 Score=51.27 Aligned_cols=22 Identities=14% Similarity=0.055 Sum_probs=20.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+++|+|+.|+|||||++.+..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999886
No 184
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.99 E-value=0.028 Score=52.69 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
..+|+|+|+.|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999984
No 185
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.99 E-value=0.041 Score=50.28 Aligned_cols=39 Identities=21% Similarity=0.167 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcC
Q 010117 173 ERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 173 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
++..+.+.+.+... ...+|.|+|.+|+|||||+..+...
T Consensus 15 ~~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 15 KRLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 34444455444332 4789999999999999999988764
No 186
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.98 E-value=0.029 Score=50.25 Aligned_cols=23 Identities=4% Similarity=0.130 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
..+|.|.|+.|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 187
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.95 E-value=0.029 Score=49.44 Aligned_cols=24 Identities=8% Similarity=0.025 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
..+++.|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999887
No 188
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.94 E-value=0.094 Score=53.78 Aligned_cols=63 Identities=11% Similarity=0.135 Sum_probs=39.1
Q ss_pred HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCC-CHHHHHHHHHh
Q 010117 179 LFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAY-DFGKILDDIIN 243 (518)
Q Consensus 179 l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~ 243 (518)
.++.|..-. +-+.++|+|..|+|||||++.+..+.... +-+..+++.+++.. ...+++.++..
T Consensus 141 ~ID~L~pi~-kGq~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~ 204 (473)
T 1sky_E 141 VVDLLAPYI-KGGKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKD 204 (473)
T ss_dssp HHHHHSCEE-TTCEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHH
T ss_pred HHHHHhhhc-cCCEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhh
Confidence 455554321 11368999999999999999988742211 22445677777765 34455555543
No 189
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.93 E-value=0.25 Score=51.03 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=30.0
Q ss_pred hhhhHHHHHHHHhcCC-------CCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEGP-------PRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~-------~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
+.--.+.|.+.|.... ..-.+++|+|.+|+|||||++.+..
T Consensus 268 ~~~l~~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 268 YGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp HHHHHHHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHHHHHHHHH
Confidence 4445556666664321 2457999999999999999998876
No 190
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.93 E-value=0.031 Score=49.79 Aligned_cols=24 Identities=21% Similarity=0.095 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.-.+|.|+|+.|+||||+++.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999887
No 191
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.91 E-value=0.032 Score=49.74 Aligned_cols=23 Identities=17% Similarity=0.026 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
...|.|+|+.|+||||+++.+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 192
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.89 E-value=0.19 Score=49.50 Aligned_cols=51 Identities=10% Similarity=-0.070 Sum_probs=34.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhh
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINP 244 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 244 (518)
-.++.|.|.+|+||||||..+..+... .=..++|++. ..+..++...++..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~ 96 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSD 96 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHH
Confidence 468999999999999999988764222 1124556544 45666777666554
No 193
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.88 E-value=0.08 Score=52.99 Aligned_cols=112 Identities=14% Similarity=0.112 Sum_probs=60.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEE-EEEcCCCCCHHHHHHHHHhhcCCCCC-CCc-cccCCHHHHHHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHA-WVRVSIAYDFGKILDDIINPVMPPSR-VSV-IIGEDYQLKKSIL 266 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~-wv~vs~~~~~~~i~~~i~~~l~~~~~-~~~-~~~~~~~~~~~~l 266 (518)
-.+++|+|+.|+|||||.+.+.. .+.......+ ++. ++... .+..... ..+ .-..+.......+
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~--~~~~~~~g~I~~~e--~~~e~---------~~~~~~~~v~Q~~~g~~~~~~~~~l 202 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIE--DPIEY---------VFKHKKSIVNQREVGEDTKSFADAL 202 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHH--HHHHHSCCEEEEEE--SSCCS---------CCCCSSSEEEEEEBTTTBSCSHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh--hcCcCCCcEEEEec--ccHhh---------hhccCceEEEeeecCCCHHHHHHHH
Confidence 46899999999999999998876 2221112233 322 11110 0000000 000 0000111234567
Q ss_pred HHHhccCcEEEEEcCCCCChHHHHHHhhhcCCCCCCcEEEEEecchhhhhhc
Q 010117 267 QDYLTAKKYFIVLDDVFDDSEIWHDLVEFLPDNQNGSRVLITLLWFELQKGE 318 (518)
Q Consensus 267 ~~~L~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~va~~~ 318 (518)
...|....=+|++|.+.+ .+......... ..|..|+.|+...++...+
T Consensus 203 ~~~L~~~pd~illdE~~d-~e~~~~~l~~~---~~g~~vi~t~H~~~~~~~~ 250 (372)
T 2ewv_A 203 RAALREDPDVIFVGEMRD-LETVETALRAA---ETGHLVFGTLHTNTAIDTI 250 (372)
T ss_dssp HHHTTSCCSEEEESCCCS-HHHHHHHHHHH---TTTCEEEECCCCCSHHHHH
T ss_pred HHHhhhCcCEEEECCCCC-HHHHHHHHHHH---hcCCEEEEEECcchHHHHH
Confidence 777777777899999987 65544433332 2366788888876654433
No 194
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.87 E-value=0.034 Score=54.26 Aligned_cols=24 Identities=8% Similarity=-0.054 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.-.+|+|+|..|+|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 457999999999999999999876
No 195
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.86 E-value=0.033 Score=49.49 Aligned_cols=22 Identities=18% Similarity=0.126 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 196
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.86 E-value=0.032 Score=52.86 Aligned_cols=23 Identities=9% Similarity=0.280 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
..+|.|+|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999887
No 197
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.78 E-value=0.037 Score=48.17 Aligned_cols=23 Identities=13% Similarity=0.109 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
-.+++|+|+.|.|||||.+.+..
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36999999999999999999876
No 198
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.78 E-value=0.073 Score=52.10 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
...+|+|+|.+|+||||++..+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988876
No 199
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.77 E-value=0.024 Score=50.38 Aligned_cols=22 Identities=5% Similarity=0.055 Sum_probs=20.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+|.|+|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999876
No 200
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.76 E-value=0.07 Score=52.16 Aligned_cols=80 Identities=8% Similarity=-0.112 Sum_probs=44.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHcCCCccccc--ceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHH
Q 010117 188 PRLSVVAILDSSGFEMTAFAADAFNNNHVKFYF--DCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSI 265 (518)
Q Consensus 188 ~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F--~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 265 (518)
....+|+|.|..|+|||||++.+..- ..... ..+..++...-+-....+.. .+.......+...+.+.+.+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~l--l~~~~~~~~v~~i~~D~f~~~~~~l~~----~~~~~~~g~P~~~D~~~l~~~ 163 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKAL--LSRWPDHPNVEVITTDGFLYSNAKLEK----QGLMKRKGFPESYDMPSLLRV 163 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHH--HTTSTTCCCEEEEEGGGGBCCHHHHHH----TTCGGGTTSGGGBCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH--hcccCCCCeEEEEeecccccchhhhhh----HHHHhhccCcccccHHHHHHH
Confidence 45679999999999999999988652 22111 12344444332222222221 111000011356677777777
Q ss_pred HHHHhccC
Q 010117 266 LQDYLTAK 273 (518)
Q Consensus 266 l~~~L~~k 273 (518)
+.....++
T Consensus 164 L~~L~~g~ 171 (321)
T 3tqc_A 164 LNAIKSGQ 171 (321)
T ss_dssp HHHHHTTC
T ss_pred HHhhhccc
Confidence 77776665
No 201
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.75 E-value=0.094 Score=48.04 Aligned_cols=46 Identities=9% Similarity=0.080 Sum_probs=31.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCccc----ccceEEEEEcCCCCCHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKF----YFDCHAWVRVSIAYDFG 235 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~----~F~~~~wv~vs~~~~~~ 235 (518)
-.+++|+|+.|+|||||++.+........ .-...+|+.-...+...
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~ 74 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE 74 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHH
Confidence 47999999999999999999975211111 12347777765544433
No 202
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.74 E-value=0.034 Score=50.36 Aligned_cols=23 Identities=13% Similarity=-0.026 Sum_probs=21.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.+|.|.|+.|+||||+|+.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999999873
No 203
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.71 E-value=0.033 Score=50.43 Aligned_cols=24 Identities=8% Similarity=0.202 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.-++|+|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 347899999999999999999986
No 204
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.71 E-value=0.032 Score=50.10 Aligned_cols=23 Identities=9% Similarity=0.140 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
..+|.|.|+.|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 205
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=93.71 E-value=0.039 Score=54.40 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
....+.++|+.|+||||||+.+.+
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 446799999999999999999998
No 206
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.70 E-value=0.16 Score=49.81 Aligned_cols=109 Identities=13% Similarity=0.065 Sum_probs=60.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHHh
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDYL 270 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L 270 (518)
.+++|+|..|.|||||.+.+..- +.. -...+.+.-....... .. .....-... ........+...|
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~--~~~-~~g~i~i~~~~e~~~~--------~~--~~~i~~~~g-gg~~~r~~la~aL 237 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF--IPK-EERIISIEDTEEIVFK--------HH--KNYTQLFFG-GNITSADCLKSCL 237 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG--SCT-TSCEEEEESSCCCCCS--------SC--SSEEEEECB-TTBCHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--CcC-CCcEEEECCeeccccc--------cc--hhEEEEEeC-CChhHHHHHHHHh
Confidence 48999999999999999998873 221 1334444322111100 00 000000000 1123345667777
Q ss_pred ccCcEEEEEcCCCCChHHHHHHhhhcCCCCCCcEEEEEecchhhhhh
Q 010117 271 TAKKYFIVLDDVFDDSEIWHDLVEFLPDNQNGSRVLITLLWFELQKG 317 (518)
Q Consensus 271 ~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~va~~ 317 (518)
..+.=+|+||.+-. .+.++.+... ..+ +.-+|+||...+....
T Consensus 238 ~~~p~ilildE~~~-~e~~~~l~~~-~~g--~~tvi~t~H~~~~~~~ 280 (330)
T 2pt7_A 238 RMRPDRIILGELRS-SEAYDFYNVL-CSG--HKGTLTTLHAGSSEEA 280 (330)
T ss_dssp TSCCSEEEECCCCS-THHHHHHHHH-HTT--CCCEEEEEECSSHHHH
T ss_pred hhCCCEEEEcCCCh-HHHHHHHHHH-hcC--CCEEEEEEcccHHHHH
Confidence 77788899999988 6677655543 222 2237888877654443
No 207
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.70 E-value=0.036 Score=49.37 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
..+|.|.|+.|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 208
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.70 E-value=0.028 Score=51.79 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=20.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+++|+|+.|+|||||++.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999886
No 209
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.69 E-value=0.28 Score=52.12 Aligned_cols=23 Identities=22% Similarity=0.101 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
-.+++|+|+.|.|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999875
No 210
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.69 E-value=0.04 Score=51.63 Aligned_cols=23 Identities=0% Similarity=0.056 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
-.+|+|.|..|+|||||++.+..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999998876
No 211
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.69 E-value=0.027 Score=49.29 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
++|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999887
No 212
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.68 E-value=0.11 Score=52.70 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHc
Q 010117 188 PRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 188 ~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
....+|.|+|+.|+||||+|+.+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999887
No 213
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.67 E-value=0.046 Score=55.34 Aligned_cols=30 Identities=20% Similarity=0.152 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCccccc
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVKFYF 220 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F 220 (518)
..+=|-++|++|+|||.||+.+.+ +....|
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~--e~~~~f 244 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVAN--QTSATF 244 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHH--HHTCEE
T ss_pred CCCCCceECCCCchHHHHHHHHHH--HhCCCE
Confidence 456799999999999999999998 444443
No 214
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.65 E-value=0.068 Score=52.78 Aligned_cols=40 Identities=15% Similarity=0.203 Sum_probs=28.9
Q ss_pred hhhHHHHHHHHhcC--CCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 173 ERGREELFDLLIEG--PPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 173 ~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
+.-.+.+++.+... .+....|.|+|+.|+||||+++.+..
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 34455566655421 33567799999999999999998876
No 215
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.62 E-value=0.1 Score=52.08 Aligned_cols=56 Identities=11% Similarity=-0.126 Sum_probs=35.8
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCc-ccccceEEEEEcCCCC
Q 010117 175 GREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHV-KFYFDCHAWVRVSIAY 232 (518)
Q Consensus 175 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~-~~~F~~~~wv~vs~~~ 232 (518)
.--++++.|..-. .=..++|+|..|+|||+|++.+.+.-.. ...+.+ +++-+++..
T Consensus 161 tGiraID~l~Pig-rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER~ 217 (427)
T 3l0o_A 161 YSTRLIDLFAPIG-KGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDERP 217 (427)
T ss_dssp HHHHHHHHHSCCB-TTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCCH
T ss_pred ccchhhhhccccc-CCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccCc
Confidence 3446777776521 2357899999999999999988873111 112333 456676654
No 216
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.61 E-value=0.33 Score=50.57 Aligned_cols=57 Identities=14% Similarity=0.116 Sum_probs=36.9
Q ss_pred cCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhh
Q 010117 185 EGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINP 244 (518)
Q Consensus 185 ~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 244 (518)
.+=..-.++.|.|.+|+||||||.++..+...+. =..++|++. .-+..++...++..
T Consensus 237 gGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~-g~~vl~~s~--E~s~~~l~~r~~~~ 293 (503)
T 1q57_A 237 LGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAM-GKKVGLAML--EESVEETAEDLIGL 293 (503)
T ss_dssp CCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTS-CCCEEEEES--SSCHHHHHHHHHHH
T ss_pred cccCCCeEEEEeecCCCCchHHHHHHHHHHHHhc-CCcEEEEec--cCCHHHHHHHHHHH
Confidence 3433446889999999999999998876422221 124667655 33456776666543
No 217
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.59 E-value=0.07 Score=51.78 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=28.7
Q ss_pred hhhhHHHHHHHHhcCC---------CCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEGP---------PRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~---------~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
+....+.|.+.+.... ..-.+++|+|+.|+||||+++.+..
T Consensus 73 ~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 73 KDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp HHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4445555666553321 2347999999999999999988865
No 218
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.57 E-value=0.022 Score=51.86 Aligned_cols=22 Identities=14% Similarity=0.126 Sum_probs=20.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+|+|+|..|+||||+++.+..
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3789999999999999999876
No 219
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.49 E-value=0.038 Score=49.31 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 010117 192 VVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~ 212 (518)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 220
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.48 E-value=0.028 Score=49.68 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.++++|+|..|+|||||++.+..
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999876
No 221
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.48 E-value=0.072 Score=47.59 Aligned_cols=21 Identities=5% Similarity=-0.091 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 010117 192 VVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~ 212 (518)
+|+|.|+.|+||||+++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999887
No 222
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.47 E-value=0.039 Score=52.05 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
-.+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999985
No 223
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.46 E-value=0.04 Score=47.98 Aligned_cols=21 Identities=0% Similarity=-0.164 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 010117 192 VVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999887
No 224
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.44 E-value=0.029 Score=49.65 Aligned_cols=23 Identities=17% Similarity=0.072 Sum_probs=17.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
..+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 225
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.41 E-value=0.043 Score=53.36 Aligned_cols=24 Identities=21% Similarity=0.141 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
...+|+|+|++|+|||||+..+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 357999999999999999998874
No 226
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.39 E-value=0.51 Score=43.52 Aligned_cols=139 Identities=13% Similarity=0.099 Sum_probs=69.5
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcC-CCccccc-ceEEEEEcCCCCCHHHHHHHHHhhcCCCCCC--
Q 010117 176 REELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNN-NHVKFYF-DCHAWVRVSIAYDFGKILDDIINPVMPPSRV-- 251 (518)
Q Consensus 176 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d-~~~~~~F-~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-- 251 (518)
.++++..+..+ +.+.|+|..|.||||+.....-+ ....... ...+.+......-...+.+.+...++.....
T Consensus 66 q~~~i~~i~~g----~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~ 141 (235)
T 3llm_A 66 ESEILEAISQN----SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSC 141 (235)
T ss_dssp HHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSE
T ss_pred HHHHHHHHhcC----CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceE
Confidence 44555555554 58999999999999865544321 1111112 2234333333333445555555544432110
Q ss_pred --------------CccccCCHHHHHHHHHHHhccCcEEEEEcCCCC-C--h----HHHHHHhhhcCCCCCCcEEEEEec
Q 010117 252 --------------SVIIGEDYQLKKSILQDYLTAKKYFIVLDDVFD-D--S----EIWHDLVEFLPDNQNGSRVLITLL 310 (518)
Q Consensus 252 --------------~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~-~--~----~~~~~l~~~l~~~~~gskIivTTR 310 (518)
...--.+...+...+...+.+-+ +||+|.+.. . . ..+..+....+ +.++|+.|=
T Consensus 142 g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~~-~lVlDEah~~~~~~~~~~~~l~~i~~~~~----~~~~il~SA 216 (235)
T 3llm_A 142 GYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRGIS-HVIVDEIHERDINTDFLLVVLRDVVQAYP----EVRIVLMSA 216 (235)
T ss_dssp EEEETTEEECCCSSSEEEEEEHHHHHHHHHHCCTTCC-EEEECCTTSCCHHHHHHHHHHHHHHHHCT----TSEEEEEEC
T ss_pred EEeechhhccCCCCCeEEEECHHHHHHHHHhhhcCCc-EEEEECCccCCcchHHHHHHHHHHHhhCC----CCeEEEEec
Confidence 00112355666666665444433 789999976 1 1 12233333332 455666542
Q ss_pred c---hhhhhhccCCCc
Q 010117 311 W---FELQKGEKIQPD 323 (518)
Q Consensus 311 ~---~~va~~~~~~Pl 323 (518)
. +.++..++++|.
T Consensus 217 T~~~~~~~~~~~~~pv 232 (235)
T 3llm_A 217 TIDTSMFCEYFFNCPI 232 (235)
T ss_dssp SSCCHHHHHHTTSCCC
T ss_pred CCCHHHHHHHcCCCCE
Confidence 2 335555555553
No 227
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.36 E-value=0.041 Score=50.71 Aligned_cols=24 Identities=8% Similarity=0.110 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
-.+++|+|+.|+|||||.+.+...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 368999999999999999999873
No 228
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.35 E-value=0.045 Score=51.51 Aligned_cols=24 Identities=4% Similarity=0.076 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
...+|+|.|+.|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999877
No 229
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.33 E-value=0.042 Score=49.62 Aligned_cols=24 Identities=17% Similarity=0.055 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
...+|.|+|+.|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999876
No 230
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.29 E-value=0.051 Score=50.01 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHc
Q 010117 188 PRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 188 ~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+.+||.|.|++|+||||.|+.+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999887
No 231
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.25 E-value=0.18 Score=48.70 Aligned_cols=23 Identities=17% Similarity=-0.002 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
..+++|+|.+|+||||++..+..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999998876
No 232
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.23 E-value=0.043 Score=51.11 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
-.+++|+|+.|+|||||++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999998873
No 233
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.22 E-value=0.3 Score=50.79 Aligned_cols=41 Identities=17% Similarity=0.110 Sum_probs=29.3
Q ss_pred hhhhHHHHHHHHhcCC-------CCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEGP-------PRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~-------~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.....++|.++|.... ...++|.|+|.+|+||||++..+..
T Consensus 76 ~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 76 QHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp HHHHHHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4555666667665421 3467999999999999999988874
No 234
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.20 E-value=0.089 Score=52.27 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=29.9
Q ss_pred hhhhHHHHHHHHhcCC---------CCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEGP---------PRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~---------~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
+.--.+.|.+.|.... ..-.+++|+|..|+||||++..+..
T Consensus 130 ~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 130 KDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp HHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHh
Confidence 5555666666664321 2357999999999999999988865
No 235
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.20 E-value=0.054 Score=48.80 Aligned_cols=25 Identities=12% Similarity=0.053 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHc
Q 010117 188 PRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 188 ~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
....+|+|+|+.|+||||+|+.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999877
No 236
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.19 E-value=0.07 Score=49.93 Aligned_cols=24 Identities=8% Similarity=-0.065 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
...+|.|.|+.|+||||+|+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 237
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.19 E-value=0.095 Score=50.94 Aligned_cols=24 Identities=13% Similarity=-0.027 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
...+|+|+|..|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999876
No 238
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.19 E-value=0.047 Score=49.58 Aligned_cols=23 Identities=0% Similarity=-0.054 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
..+|.|.|+.|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 239
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.18 E-value=0.047 Score=51.07 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=20.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+++|+|+.|.|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 7899999999999999999875
No 240
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.17 E-value=0.044 Score=49.75 Aligned_cols=23 Identities=0% Similarity=-0.204 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
..+|.|.|+.|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 241
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.14 E-value=0.041 Score=49.46 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 010117 192 VVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~ 212 (518)
+++|+|..|+|||||.+.+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 689999999999999998876
No 242
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.11 E-value=0.29 Score=52.03 Aligned_cols=23 Identities=22% Similarity=0.143 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
-.+++|+|+.|.|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 36899999999999999999875
No 243
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.04 E-value=0.046 Score=50.43 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
...|.|.|+.|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 244
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.04 E-value=0.054 Score=47.85 Aligned_cols=23 Identities=17% Similarity=-0.021 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
-.+|.|+|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999877
No 245
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.03 E-value=0.034 Score=51.56 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=16.0
Q ss_pred eEEEEEcCCCccHHHHHHHHH-c
Q 010117 191 SVVAILDSSGFEMTAFAADAF-N 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~-~ 212 (518)
.+++|+|+.|+|||||++.+. .
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 589999999999999999998 5
No 246
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.96 E-value=0.055 Score=49.32 Aligned_cols=23 Identities=9% Similarity=-0.061 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
-.+|.|+|+.|+||||+++.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999876
No 247
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.94 E-value=0.05 Score=48.99 Aligned_cols=22 Identities=5% Similarity=0.016 Sum_probs=20.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+|.|.|+.|+||||+++.+..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999999988
No 248
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.92 E-value=0.056 Score=51.85 Aligned_cols=24 Identities=25% Similarity=0.200 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999873
No 249
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.90 E-value=0.046 Score=49.96 Aligned_cols=22 Identities=23% Similarity=0.111 Sum_probs=20.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+++|+|+.|.|||||.+.+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999875
No 250
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.88 E-value=0.048 Score=51.26 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=19.8
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q 010117 193 VAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 193 i~I~G~gGvGKTtLA~~v~~d 213 (518)
+.|+|+.|+||||||+.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999984
No 251
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.81 E-value=0.34 Score=49.57 Aligned_cols=57 Identities=14% Similarity=-0.033 Sum_probs=37.0
Q ss_pred cCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhh
Q 010117 185 EGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINP 244 (518)
Q Consensus 185 ~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 244 (518)
.+=..-.++.|.|.+|+||||||..+..+..... =..++|++.- -+..++...++..
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECC--CCHHHHHHHHHHH
Confidence 4433346899999999999999998876422111 1246676553 4556677666543
No 252
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.81 E-value=0.065 Score=49.03 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999865
No 253
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.81 E-value=0.056 Score=49.58 Aligned_cols=23 Identities=9% Similarity=0.050 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
...|.|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999987
No 254
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.77 E-value=0.06 Score=54.83 Aligned_cols=92 Identities=12% Similarity=0.227 Sum_probs=53.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcccccc----eEEEEEcCCCC-CHHHHHHHHHhhcCCCCCC--CccccCC-HHH-
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKFYFD----CHAWVRVSIAY-DFGKILDDIINPVMPPSRV--SVIIGED-YQL- 261 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~----~~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~--~~~~~~~-~~~- 261 (518)
..++|.|..|+|||+|+.++.+.... +-+ .++++-+++.. .+.+++.++...=...... ....+.. ...
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHH
Confidence 34789999999999999999985443 222 46677777654 4556666654421000000 0001111 111
Q ss_pred ----HHHHHHHHhc---cCcEEEEEcCCCC
Q 010117 262 ----KKSILQDYLT---AKKYFIVLDDVFD 284 (518)
Q Consensus 262 ----~~~~l~~~L~---~kr~LlVLDdvw~ 284 (518)
..-.+.++++ |+..||++||+-.
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 1234566664 6899999999843
No 255
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.71 E-value=0.05 Score=49.99 Aligned_cols=23 Identities=9% Similarity=-0.208 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
...|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
No 256
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.70 E-value=0.44 Score=50.83 Aligned_cols=127 Identities=13% Similarity=0.071 Sum_probs=68.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCc-ccc--cc-eEEEEEcCC----CCCHHHHH--------------HHHHhhcCCC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHV-KFY--FD-CHAWVRVSI----AYDFGKIL--------------DDIINPVMPP 248 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~-~~~--F~-~~~wv~vs~----~~~~~~i~--------------~~i~~~l~~~ 248 (518)
.+++|+|+.|.|||||.+.+..-..- ... +. .+.++.-.. ..++.+.+ .++++.++..
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~ 462 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGII 462 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCT
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCc
Confidence 58999999999999999999864211 111 11 123332111 11232222 2344444443
Q ss_pred CCC-CccccCCHHHHH-HHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC--CCCCcEEEEEecchhhhhh
Q 010117 249 SRV-SVIIGEDYQLKK-SILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD--NQNGSRVLITLLWFELQKG 317 (518)
Q Consensus 249 ~~~-~~~~~~~~~~~~-~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~--~~~gskIivTTR~~~va~~ 317 (518)
... ..+...+..+.+ -.|...|..+.=+|+||.--. |...-..+...+.. ...|..||++|.+...+..
T Consensus 463 ~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~ 537 (607)
T 3bk7_A 463 DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDY 537 (607)
T ss_dssp TTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 221 112334444433 456777878888999999766 43333333332221 1235678888888665543
No 257
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.70 E-value=0.058 Score=49.17 Aligned_cols=21 Identities=10% Similarity=0.135 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 010117 192 VVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 258
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.68 E-value=0.06 Score=47.67 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
..+++.|+|..|+|||||+..+..
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHH
Confidence 367899999999999999999886
No 259
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.64 E-value=0.098 Score=48.49 Aligned_cols=25 Identities=8% Similarity=0.177 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.-.+|.|.|+.|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3478999999999999999999884
No 260
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.61 E-value=0.068 Score=50.26 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
...++.++|.||+||||++..+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 467889999999999999999875
No 261
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.58 E-value=0.056 Score=51.70 Aligned_cols=53 Identities=13% Similarity=0.230 Sum_probs=32.2
Q ss_pred HHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC-C-CCCcEEEEEecchhhhh
Q 010117 264 SILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD-N-QNGSRVLITLLWFELQK 316 (518)
Q Consensus 264 ~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~-~-~~gskIivTTR~~~va~ 316 (518)
-.|...|..+.=+|+||.--. |...-..+...+.. . ..|..||++|.+...+.
T Consensus 152 v~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~ 208 (275)
T 3gfo_A 152 VAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVP 208 (275)
T ss_dssp HHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGG
T ss_pred HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH
Confidence 456677777788999999766 44333333333321 1 12677888888765544
No 262
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.58 E-value=0.056 Score=51.30 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=20.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+++|+|+.|+|||||.+.+..
T Consensus 33 e~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999875
No 263
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.55 E-value=0.093 Score=52.22 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
....|.++|++|+|||++|+.+.+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999999983
No 264
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.54 E-value=0.05 Score=51.24 Aligned_cols=22 Identities=9% Similarity=-0.020 Sum_probs=20.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+|.|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 265
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=92.54 E-value=0.14 Score=52.73 Aligned_cols=102 Identities=15% Similarity=0.131 Sum_probs=56.2
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHH-HHHHcCCCcccccce-EEEEEcCCCC-CHHHHHHHHHhhcCCCCCC---
Q 010117 178 ELFDLLIEGPPRLSVVAILDSSGFEMTAFA-ADAFNNNHVKFYFDC-HAWVRVSIAY-DFGKILDDIINPVMPPSRV--- 251 (518)
Q Consensus 178 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA-~~v~~d~~~~~~F~~-~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~--- 251 (518)
+.++.|..=. .=..++|+|..|+|||+|| ..+.|.. .-+. ++++-+++.. .+.++.+++...=......
T Consensus 164 raID~l~Pig-rGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~ 238 (515)
T 2r9v_A 164 KAIDSMIPIG-RGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVV 238 (515)
T ss_dssp HHHHHHSCEE-TTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEE
T ss_pred cccccccccc-cCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEE
Confidence 4555554311 1246899999999999996 5777732 2343 4677777765 4556666665421100000
Q ss_pred CccccCCHHHH-----HHHHHHHh--ccCcEEEEEcCCCC
Q 010117 252 SVIIGEDYQLK-----KSILQDYL--TAKKYFIVLDDVFD 284 (518)
Q Consensus 252 ~~~~~~~~~~~-----~~~l~~~L--~~kr~LlVLDdvw~ 284 (518)
...+....... .-.+.+++ +||..||++||+-.
T Consensus 239 atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 239 ASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 00011111111 22344555 47899999999853
No 266
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=92.52 E-value=0.15 Score=52.53 Aligned_cols=90 Identities=12% Similarity=0.162 Sum_probs=50.3
Q ss_pred eEEEEEcCCCccHHHHH-HHHHcCCCcccccce-EEEEEcCCCC-CHHHHHHHHHhhcCC--------CCCCCccccCCH
Q 010117 191 SVVAILDSSGFEMTAFA-ADAFNNNHVKFYFDC-HAWVRVSIAY-DFGKILDDIINPVMP--------PSRVSVIIGEDY 259 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA-~~v~~d~~~~~~F~~-~~wv~vs~~~-~~~~i~~~i~~~l~~--------~~~~~~~~~~~~ 259 (518)
..++|+|..|+|||+|| ..+.|.. . -+. ++++-+++.. .+.++.+++...=.. ..+.+.....-.
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~--~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 239 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQ--G--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLA 239 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCC--T--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHH
T ss_pred CEEEEecCCCCCccHHHHHHHHHhh--c--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHH
Confidence 46899999999999995 5777732 2 342 4677777765 345555555432100 000000001111
Q ss_pred HHHHHHHHHHh--ccCcEEEEEcCCCC
Q 010117 260 QLKKSILQDYL--TAKKYFIVLDDVFD 284 (518)
Q Consensus 260 ~~~~~~l~~~L--~~kr~LlVLDdvw~ 284 (518)
....-.+.+++ .||..||++||+-.
T Consensus 240 ~~~a~tiAEyfrd~G~dVLli~Dsltr 266 (507)
T 1fx0_A 240 PYTGAALAEYFMYRERHTLIIYDDLSK 266 (507)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 11222333443 47999999999854
No 267
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.52 E-value=0.065 Score=50.45 Aligned_cols=22 Identities=14% Similarity=0.160 Sum_probs=20.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+++|+|+.|.|||||.+.+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 268
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=92.50 E-value=0.6 Score=52.32 Aligned_cols=121 Identities=16% Similarity=0.084 Sum_probs=66.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcccccc----eEEEEEcCCCC-------CH-----------HHHHHHHHhhcCCC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKFYFD----CHAWVRVSIAY-------DF-----------GKILDDIINPVMPP 248 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~----~~~wv~vs~~~-------~~-----------~~i~~~i~~~l~~~ 248 (518)
.+++|+|..|.|||||.+.+..- .+. .|+ .+ .+.+.+.+ ++ .+-..++++.++..
T Consensus 462 e~v~LiGpNGsGKSTLLk~LagG-~i~-g~~~~~~~~-~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~ 538 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIANG-QVD-GFPTQEECR-TVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFT 538 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHT-CST-TCCCTTTSC-EEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-CcC-CCcccccee-EEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCC
Confidence 58999999999999999999841 121 111 01 12333221 11 22234455555542
Q ss_pred CC--CCccccCCHHH-HHHHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCCCCCCcEEEEEecchhhhh
Q 010117 249 SR--VSVIIGEDYQL-KKSILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPDNQNGSRVLITLLWFELQK 316 (518)
Q Consensus 249 ~~--~~~~~~~~~~~-~~~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~~~gskIivTTR~~~va~ 316 (518)
.. ...+...+..+ ..-.|...|-.+.=+|+||.--+ |...-..+...+.. .|..||++|.+...+.
T Consensus 539 ~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~ 609 (986)
T 2iw3_A 539 DEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLD 609 (986)
T ss_dssp HHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHH
T ss_pred hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHH
Confidence 10 01112233333 33356666667777999999766 44443444444433 3677888888865554
No 269
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.49 E-value=0.064 Score=48.92 Aligned_cols=21 Identities=5% Similarity=0.052 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 010117 192 VVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 270
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.49 E-value=0.06 Score=50.37 Aligned_cols=22 Identities=14% Similarity=0.227 Sum_probs=20.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+++|+|+.|.|||||.+.+..
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999875
No 271
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.48 E-value=0.066 Score=52.64 Aligned_cols=22 Identities=9% Similarity=0.178 Sum_probs=20.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+|+|.|+.|+||||||..+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999887
No 272
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.46 E-value=0.33 Score=51.04 Aligned_cols=23 Identities=13% Similarity=0.166 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
=.+++|+|+.|+|||||.+.+..
T Consensus 25 Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 25 NTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 36999999999999999999875
No 273
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.41 E-value=0.061 Score=50.86 Aligned_cols=22 Identities=14% Similarity=0.154 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+++|+|+.|.|||||.+.+..
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999875
No 274
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.41 E-value=0.076 Score=52.11 Aligned_cols=23 Identities=9% Similarity=0.228 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.++|.|+|+.|+||||||..+..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 275
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=92.38 E-value=0.061 Score=51.86 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
..-+.|+|+.|+|||++|+.+.+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999987
No 276
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.36 E-value=0.067 Score=50.11 Aligned_cols=22 Identities=18% Similarity=0.087 Sum_probs=20.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+++|+|+.|.|||||.+.+..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999999875
No 277
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.34 E-value=0.063 Score=50.98 Aligned_cols=22 Identities=23% Similarity=0.215 Sum_probs=20.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+++|+|+.|.|||||.+.+..
T Consensus 51 ei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEcCCCCcHHHHHHHHHc
Confidence 5899999999999999999875
No 278
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=92.32 E-value=0.075 Score=54.12 Aligned_cols=94 Identities=13% Similarity=0.179 Sum_probs=53.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcc--------cccc-eEEEEEcCCCC-CHHHHHHHHHhhcCCCCCC---CccccC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVK--------FYFD-CHAWVRVSIAY-DFGKILDDIINPVMPPSRV---SVIIGE 257 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~--------~~F~-~~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~---~~~~~~ 257 (518)
..++|.|..|+|||+|+.++.+..... ++=+ .++++-+++.. .+.++..++...=...... ...+..
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p 227 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDP 227 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCC
Confidence 457899999999999999998864442 1111 46667777654 4556666654421000000 000111
Q ss_pred CHHHH-----HHHHHHHhc---cCcEEEEEcCCCC
Q 010117 258 DYQLK-----KSILQDYLT---AKKYFIVLDDVFD 284 (518)
Q Consensus 258 ~~~~~-----~~~l~~~L~---~kr~LlVLDdvw~ 284 (518)
..... .-.+.++++ |+..||++||+-.
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 22221 234566664 6899999999843
No 279
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.31 E-value=0.07 Score=48.12 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 010117 192 VVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~ 212 (518)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999876
No 280
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.31 E-value=0.11 Score=45.07 Aligned_cols=23 Identities=4% Similarity=0.076 Sum_probs=20.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999874
No 281
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.21 E-value=0.09 Score=53.70 Aligned_cols=41 Identities=27% Similarity=0.216 Sum_probs=29.9
Q ss_pred hhhhHHHHHHHHhcC------C-CCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEG------P-PRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~------~-~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.....++|.+++... . ....+|.|+|.+|+||||++..+..
T Consensus 74 ~~~~~~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 74 IKIVYEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp HHHHHHHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 445556666666532 1 2356999999999999999988876
No 282
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.21 E-value=0.4 Score=49.08 Aligned_cols=51 Identities=20% Similarity=0.119 Sum_probs=32.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHh
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIIN 243 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 243 (518)
.-.++.|.|.+|+||||||..+..+...++ ..++|++.- -+..++...++.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g--~~vl~fSlE--ms~~ql~~R~~~ 246 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIV 246 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTT--CEEEEECSS--SCTTHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcC--CEEEEEECC--CCHHHHHHHHHH
Confidence 346899999999999999998877432221 246666543 333444444443
No 283
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.20 E-value=0.065 Score=51.15 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=19.8
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q 010117 193 VAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 193 i~I~G~gGvGKTtLA~~v~~d 213 (518)
+.|+|+.|+||||||+.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999999984
No 284
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=92.16 E-value=0.18 Score=51.91 Aligned_cols=102 Identities=15% Similarity=0.139 Sum_probs=56.7
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHH-HHHHcCCCcccccce-EEEEEcCCCC-CHHHHHHHHHhhcCCCCCC---
Q 010117 178 ELFDLLIEGPPRLSVVAILDSSGFEMTAFA-ADAFNNNHVKFYFDC-HAWVRVSIAY-DFGKILDDIINPVMPPSRV--- 251 (518)
Q Consensus 178 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA-~~v~~d~~~~~~F~~-~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~--- 251 (518)
+.++.|..=. .=..++|+|..|+|||+|| ..+.|.. .-+. ++++-+++.. .+.++.+++...-......
T Consensus 151 raID~l~Pig-rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~ 225 (502)
T 2qe7_A 151 KAIDSMIPIG-RGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVT 225 (502)
T ss_dssp HHHHHSSCCB-TTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEE
T ss_pred eecccccccc-cCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEE
Confidence 3455554321 2246899999999999995 5777732 2343 4677777765 4556666666522111110
Q ss_pred CccccCCHHHH-----HHHHHHHh--ccCcEEEEEcCCCC
Q 010117 252 SVIIGEDYQLK-----KSILQDYL--TAKKYFIVLDDVFD 284 (518)
Q Consensus 252 ~~~~~~~~~~~-----~~~l~~~L--~~kr~LlVLDdvw~ 284 (518)
...+....... .-.+.+++ .||..||++||+-.
T Consensus 226 atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 226 ASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 00011111111 12344555 47899999999853
No 285
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.13 E-value=0.1 Score=46.05 Aligned_cols=26 Identities=8% Similarity=0.013 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHcC
Q 010117 188 PRLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 188 ~~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.....|.|+|.+|+|||||...+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 45577999999999999999998874
No 286
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.12 E-value=0.076 Score=47.42 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
....|+|+|..|+|||||.+.+...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3567899999999999999998875
No 287
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.09 E-value=0.31 Score=50.07 Aligned_cols=50 Identities=14% Similarity=0.140 Sum_probs=33.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDII 242 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 242 (518)
-.++.|.|.+|+||||||..+..+..... =..++|++.. .+...+...++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E--~s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLE--MSAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESS--SCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECC--CCHHHHHHHHH
Confidence 46899999999999999998877422111 1246776643 34455655554
No 288
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=92.08 E-value=0.085 Score=53.98 Aligned_cols=104 Identities=13% Similarity=0.089 Sum_probs=58.0
Q ss_pred HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccc--cceEEEEEcCCCC-CHHHHHHHHHhhcCCCCCC--Cc
Q 010117 179 LFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFY--FDCHAWVRVSIAY-DFGKILDDIINPVMPPSRV--SV 253 (518)
Q Consensus 179 l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~--F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~--~~ 253 (518)
+++.|..=. .=..++|.|..|+|||+|+.++.++....+. =+.++++-+++.. .+.+++.++...=...... ..
T Consensus 142 ~ID~l~pig-rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~ 220 (469)
T 2c61_A 142 TIDGTNTLV-RGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLN 220 (469)
T ss_dssp HHHTTSCCB-TTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEE
T ss_pred eeeeeeccc-cCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEE
Confidence 455554321 1245788899999999999999886544221 1346677777664 4566666665431110000 00
Q ss_pred cccCC-H-----HHHHHHHHHHhc---cCcEEEEEcCCC
Q 010117 254 IIGED-Y-----QLKKSILQDYLT---AKKYFIVLDDVF 283 (518)
Q Consensus 254 ~~~~~-~-----~~~~~~l~~~L~---~kr~LlVLDdvw 283 (518)
..+.. . ....-.+.++++ |+..||++||+-
T Consensus 221 tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 221 LADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp ETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 01111 1 112233555654 689999999963
No 289
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.07 E-value=0.096 Score=44.71 Aligned_cols=23 Identities=9% Similarity=0.148 Sum_probs=20.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
+-|.|+|.+|+|||||...+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999998875
No 290
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=92.03 E-value=0.33 Score=54.20 Aligned_cols=51 Identities=14% Similarity=0.106 Sum_probs=33.8
Q ss_pred ccCcEEEEEcCCCC--ChHHHHH----HhhhcCCCCCCcEEEEEecchhhhhhccCCC
Q 010117 271 TAKKYFIVLDDVFD--DSEIWHD----LVEFLPDNQNGSRVLITLLWFELQKGEKIQP 322 (518)
Q Consensus 271 ~~kr~LlVLDdvw~--~~~~~~~----l~~~l~~~~~gskIivTTR~~~va~~~~~~P 322 (518)
..++-||+||..-. ++..-.. +...+. ...|+.||++|.+.+++..+...|
T Consensus 750 a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~-~~~g~tvl~vTH~~el~~l~~~~~ 806 (918)
T 3thx_B 750 ATSQSLVILDELGRGTSTHDGIAIAYATLEYFI-RDVKSLTLFVTHYPPVCELEKNYS 806 (918)
T ss_dssp CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHH-HTTCCEEEEECSCGGGGGHHHHTT
T ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-HhcCCeEEEEeCcHHHHHHHhhcc
Confidence 45778999999876 3332222 222222 124889999999999888776555
No 291
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.98 E-value=0.074 Score=50.03 Aligned_cols=22 Identities=9% Similarity=0.226 Sum_probs=20.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+++|+|+.|.|||||.+.+..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999876
No 292
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.90 E-value=0.083 Score=49.10 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
..+|.|.|+.|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999876
No 293
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.87 E-value=0.075 Score=48.67 Aligned_cols=22 Identities=5% Similarity=-0.043 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
..|.|.|+.|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999977
No 294
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.86 E-value=0.077 Score=50.85 Aligned_cols=22 Identities=9% Similarity=-0.082 Sum_probs=20.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+++|+|+.|.|||||.+.+..
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999875
No 295
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=91.85 E-value=0.29 Score=52.23 Aligned_cols=23 Identities=22% Similarity=0.172 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
-.+++|+|+.|.|||||.+.+..
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999875
No 296
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.84 E-value=0.088 Score=51.39 Aligned_cols=22 Identities=9% Similarity=0.141 Sum_probs=20.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
++|.|+|+.|+||||||+.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 297
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.82 E-value=0.076 Score=46.95 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 010117 192 VVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~d 213 (518)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999998873
No 298
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.82 E-value=0.09 Score=50.99 Aligned_cols=23 Identities=17% Similarity=0.096 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.++|.|+|+.|+||||||..+..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 36899999999999999999987
No 299
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.75 E-value=0.088 Score=48.46 Aligned_cols=21 Identities=10% Similarity=0.015 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 010117 192 VVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999876
No 300
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.74 E-value=0.74 Score=48.91 Aligned_cols=23 Identities=22% Similarity=0.157 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
-.+++|+|+.|.|||||++.+..
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999998865
No 301
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.66 E-value=0.16 Score=50.76 Aligned_cols=35 Identities=11% Similarity=0.134 Sum_probs=25.9
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 178 ELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 178 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+++-+.-+-..-.+++|+|+.|.|||||++.+..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 34444433323456999999999999999999986
No 302
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.66 E-value=0.12 Score=45.81 Aligned_cols=25 Identities=8% Similarity=-0.031 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
....|.|+|.+|+|||||...+.+.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998875
No 303
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.65 E-value=0.091 Score=47.91 Aligned_cols=21 Identities=10% Similarity=-0.042 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 010117 192 VVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 304
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.65 E-value=0.1 Score=49.48 Aligned_cols=111 Identities=17% Similarity=0.140 Sum_probs=60.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEc-CCCCCHHHHHHHHHh--hcCCCCCCCccccCCHHHHHHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRV-SIAYDFGKILDDIIN--PVMPPSRVSVIIGEDYQLKKSIL 266 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~v-s~~~~~~~i~~~i~~--~l~~~~~~~~~~~~~~~~~~~~l 266 (518)
-.+++|+|+.|+|||||.+.+.. .+...+...+++.- .-.+-.... ..++. .++. +...+...+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g--~~~~~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl----------~~~~l~~~l 91 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIEDPIEYVFKHK-KSIVNQREVGE----------DTKSFADAL 91 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH--HHHHHCCCEEEEEESSCCSCCCCS-SSEEEEEEBTT----------TBSCHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH--hCCCCCCCEEEEcCCcceeecCCc-ceeeeHHHhCC----------CHHHHHHHH
Confidence 46999999999999999998876 22211223333211 100000000 00000 0000 112235667
Q ss_pred HHHhccCcEEEEEcCCCCChHHHHHHhhhcCCCCCCcEEEEEecchhhhhh
Q 010117 267 QDYLTAKKYFIVLDDVFDDSEIWHDLVEFLPDNQNGSRVLITLLWFELQKG 317 (518)
Q Consensus 267 ~~~L~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~va~~ 317 (518)
...|..+.=+|++|..-+ .+....+.... ..|.-|++||.+.+++..
T Consensus 92 a~aL~~~p~illlDEp~D-~~~~~~~l~~~---~~g~~vl~t~H~~~~~~~ 138 (261)
T 2eyu_A 92 RAALREDPDVIFVGEMRD-LETVETALRAA---ETGHLVFGTLHTNTAIDT 138 (261)
T ss_dssp HHHHHHCCSEEEESCCCS-HHHHHHHHHHH---HTTCEEEEEECCSSHHHH
T ss_pred HHHHhhCCCEEEeCCCCC-HHHHHHHHHHH---ccCCEEEEEeCcchHHHH
Confidence 777777777899999976 55544433332 236678999988765443
No 305
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.54 E-value=0.11 Score=50.41 Aligned_cols=25 Identities=12% Similarity=0.175 Sum_probs=21.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHc
Q 010117 188 PRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 188 ~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
...++|+|+|-||+||||+|..+..
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~ 63 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSA 63 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHH
Confidence 3578999999999999999987765
No 306
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.53 E-value=0.098 Score=46.89 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999999875
No 307
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.52 E-value=0.098 Score=50.39 Aligned_cols=22 Identities=9% Similarity=0.276 Sum_probs=20.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 308
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.49 E-value=0.13 Score=46.57 Aligned_cols=38 Identities=11% Similarity=0.095 Sum_probs=27.9
Q ss_pred hhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 174 RGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 174 ~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.-...+..++.. -++..-+.|+|++|+||||+|..+.+
T Consensus 43 ~f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 43 TFLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHH
Confidence 335566666653 22334699999999999999998887
No 309
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.48 E-value=0.058 Score=52.01 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=18.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
+..+|+|.|..|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998876
No 310
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.47 E-value=0.12 Score=44.00 Aligned_cols=22 Identities=14% Similarity=0.336 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 010117 192 VVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~d 213 (518)
-|.++|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999865
No 311
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.45 E-value=0.1 Score=48.25 Aligned_cols=23 Identities=13% Similarity=0.003 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
...|.|.|+.|+||||+|+.+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999987
No 312
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.44 E-value=0.077 Score=49.11 Aligned_cols=24 Identities=17% Similarity=0.034 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.-.+|+|.|..|+|||||++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 347999999999999999998877
No 313
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=91.43 E-value=0.91 Score=40.83 Aligned_cols=25 Identities=28% Similarity=0.239 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
..--|.|+|..|+|||||...+.+.
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcC
Confidence 3456899999999999999998875
No 314
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.41 E-value=0.1 Score=50.60 Aligned_cols=23 Identities=4% Similarity=0.121 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
-.+++|+|+.|.|||||++.+..
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 46899999999999999999886
No 315
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=91.38 E-value=0.35 Score=51.40 Aligned_cols=23 Identities=17% Similarity=-0.009 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
-.+++|+|+.|.|||||++.+..
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTT
T ss_pred CCEEEEECCCCChHHHHHHHHhc
Confidence 36899999999999999998865
No 316
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.34 E-value=0.29 Score=58.72 Aligned_cols=88 Identities=13% Similarity=-0.023 Sum_probs=57.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCc-cccCCHHHHHHHHH
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSV-IIGEDYQLKKSILQ 267 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~-~~~~~~~~~~~~l~ 267 (518)
.-++|-|+|++|+|||+||.++... ...+=..++|+++...++... ++.++.+...-. ......++....+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 4579999999999999999998773 322223578888888877665 334442211100 02234456666666
Q ss_pred HHhc-cCcEEEEEcCCC
Q 010117 268 DYLT-AKKYFIVLDDVF 283 (518)
Q Consensus 268 ~~L~-~kr~LlVLDdvw 283 (518)
...+ .+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 6654 466799999994
No 317
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.30 E-value=0.1 Score=50.91 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.++++.|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999999864
No 318
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.30 E-value=0.13 Score=45.37 Aligned_cols=24 Identities=4% Similarity=0.044 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999874
No 319
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.26 E-value=0.11 Score=50.24 Aligned_cols=24 Identities=13% Similarity=0.102 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
..++|.|+|+.|+||||||..+..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 357899999999999999999987
No 320
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.23 E-value=0.1 Score=49.87 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
-.++.|+|.+|+|||||+..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999998875
No 321
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.17 E-value=0.11 Score=47.25 Aligned_cols=21 Identities=14% Similarity=0.143 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 010117 192 VVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~ 212 (518)
+|.|.|++|+||||.|+.+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999887
No 322
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.15 E-value=0.25 Score=45.14 Aligned_cols=23 Identities=9% Similarity=-0.097 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
-.+|.|.|+.|+||||+++.+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 323
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.11 E-value=0.11 Score=52.59 Aligned_cols=35 Identities=20% Similarity=0.164 Sum_probs=25.9
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 178 ELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 178 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+.+.|........+++|+|..|+|||||.+.+..
T Consensus 57 ~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 57 AISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred hhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 33444433223457999999999999999999987
No 324
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.05 E-value=0.12 Score=44.36 Aligned_cols=24 Identities=0% Similarity=0.041 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.--|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999998865
No 325
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.05 E-value=0.18 Score=43.81 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
+...|.|+|..|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998765
No 326
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.02 E-value=0.11 Score=49.44 Aligned_cols=21 Identities=14% Similarity=0.390 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 010117 192 VVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.++|+|..|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999875
No 327
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.00 E-value=0.23 Score=48.90 Aligned_cols=25 Identities=8% Similarity=-0.005 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHc
Q 010117 188 PRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 188 ~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+..+|+|+|.+|+|||||+..+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4578999999999999999998864
No 328
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.97 E-value=0.12 Score=48.71 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=19.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
++|+|.|-||+||||+|..+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~ 23 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS 23 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHH
Confidence 6788899999999999987765
No 329
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.95 E-value=0.12 Score=45.59 Aligned_cols=23 Identities=13% Similarity=0.294 Sum_probs=20.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.-|.|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999865
No 330
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.93 E-value=0.12 Score=49.80 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
-.+++|+|.+|+|||||+..+...
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 358999999999999999988763
No 331
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=90.89 E-value=0.13 Score=44.59 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
..-|.|+|.+|+|||||...+.+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456899999999999999998765
No 332
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.74 E-value=0.13 Score=47.61 Aligned_cols=24 Identities=13% Similarity=-0.015 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
...+|+|+|+.|+||||+++.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999876
No 333
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=90.72 E-value=0.14 Score=43.88 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=20.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNN 214 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~ 214 (518)
.-|.|+|.+|+|||||...+.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 468899999999999999988653
No 334
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.72 E-value=0.23 Score=53.07 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
-.+++|+|+.|.|||||++.+..
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999875
No 335
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=90.72 E-value=0.14 Score=49.05 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.++|+|.|-||+||||+|..+..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~ 24 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVA 24 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHH
Confidence 47888999999999999988765
No 336
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=90.57 E-value=0.17 Score=43.45 Aligned_cols=24 Identities=17% Similarity=0.088 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.--|.|+|..|+|||||...+.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456899999999999999998865
No 337
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.53 E-value=0.24 Score=48.76 Aligned_cols=34 Identities=18% Similarity=0.133 Sum_probs=25.3
Q ss_pred HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 179 LFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 179 l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
+++-+.-.-..-.+++|+|..|+|||||.+.+..
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4444432223468999999999999999999874
No 338
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=90.45 E-value=0.18 Score=43.23 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
--|.|+|..|+|||||...+.+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999998865
No 339
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=90.45 E-value=0.3 Score=46.08 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=29.3
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCC
Q 010117 175 GREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNN 214 (518)
Q Consensus 175 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~ 214 (518)
...++.+.+.....+...|+|+|..|+|||||...+....
T Consensus 21 ~l~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 21 KLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred HHHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444455555544456779999999999999999998753
No 340
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.42 E-value=0.14 Score=44.00 Aligned_cols=23 Identities=13% Similarity=0.223 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
--|.|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999999864
No 341
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=90.38 E-value=0.34 Score=45.87 Aligned_cols=41 Identities=10% Similarity=0.101 Sum_probs=29.0
Q ss_pred hhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCC
Q 010117 174 RGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNN 214 (518)
Q Consensus 174 ~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~ 214 (518)
....++++.+.........|.++|..|+|||||...+.+..
T Consensus 23 ~~l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 23 TKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 33444444444444445678999999999999999998753
No 342
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.37 E-value=0.27 Score=44.34 Aligned_cols=49 Identities=8% Similarity=-0.063 Sum_probs=31.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHH
Q 010117 192 VVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDII 242 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 242 (518)
.|+|-|.-|+||||.++.+.+ ..+..-..++...-.......+.+++++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEECCCCCcHHHHHHHHh
Confidence 478889999999999999987 4444333344444433333444455544
No 343
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.35 E-value=0.15 Score=44.89 Aligned_cols=22 Identities=14% Similarity=0.193 Sum_probs=19.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+.+|+|..|.|||||...++-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3889999999999999998864
No 344
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.31 E-value=0.16 Score=43.67 Aligned_cols=23 Identities=9% Similarity=0.200 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 010117 192 VVAILDSSGFEMTAFAADAFNNN 214 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~d~ 214 (518)
-|.|+|..|+|||||...+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999987653
No 345
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=90.30 E-value=0.37 Score=50.17 Aligned_cols=59 Identities=10% Similarity=0.106 Sum_probs=41.2
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCC-HHHHHHHH
Q 010117 178 ELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYD-FGKILDDI 241 (518)
Q Consensus 178 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~-~~~i~~~i 241 (518)
++++.|..-. +=..++|.|..|+|||+|++++.+.. +-+.++++-+++..+ +.+++.++
T Consensus 216 rvID~l~Pig-kGqr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQA-KGGTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEE-TTCEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcc-cCCeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHH
Confidence 4566665321 22578999999999999999988732 235688888888765 45555554
No 346
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=90.29 E-value=0.57 Score=49.60 Aligned_cols=102 Identities=11% Similarity=0.085 Sum_probs=52.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHH-HH
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQ-DY 269 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~-~~ 269 (518)
+++.|.|.+|.||||++..+... .... ...+.+......-...+ .+.++.... +...+..... .+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~--l~~~-g~~Vl~~ApT~~Aa~~L----~e~~~~~a~-------Tih~ll~~~~~~~ 270 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADL--AESL-GLEVGLCAPTGKAARRL----GEVTGRTAS-------TVHRLLGYGPQGF 270 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH--HHHT-TCCEEEEESSHHHHHHH----HHHHTSCEE-------EHHHHTTEETTEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH--HHhc-CCeEEEecCcHHHHHHh----HhhhcccHH-------HHHHHHcCCcchh
Confidence 68889999999999999888762 2111 12344443332222222 222221110 1111000000 00
Q ss_pred hc-----cCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEEe
Q 010117 270 LT-----AKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLITL 309 (518)
Q Consensus 270 L~-----~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTT 309 (518)
.. .+-=+||+|.+.. +...+..+...++ .|.++|+.-
T Consensus 271 ~~~~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvG 313 (574)
T 3e1s_A 271 RHNHLEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVG 313 (574)
T ss_dssp SCSSSSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEE
T ss_pred hhhhcccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEe
Confidence 00 0223899999876 5677777877766 356676653
No 347
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=90.29 E-value=0.15 Score=44.61 Aligned_cols=23 Identities=9% Similarity=-0.006 Sum_probs=20.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999875
No 348
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=90.25 E-value=0.16 Score=49.62 Aligned_cols=37 Identities=11% Similarity=0.010 Sum_probs=28.7
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+..++.+...+..+ .-+.++|.+|+|||+||+.+.+
T Consensus 32 ~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 32 QKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp CHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHH
Confidence 455566666666554 2588999999999999999988
No 349
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.24 E-value=0.16 Score=47.18 Aligned_cols=24 Identities=8% Similarity=0.001 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
...|.|.|..|+||||+++.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999873
No 350
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=90.23 E-value=0.16 Score=43.68 Aligned_cols=24 Identities=13% Similarity=0.200 Sum_probs=20.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNN 214 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~ 214 (518)
--|.|+|..|+|||||...+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 458999999999999999988753
No 351
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.17 E-value=0.17 Score=45.61 Aligned_cols=23 Identities=22% Similarity=0.078 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
-+.|.|.|..|+||||||..+..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 36789999999999999999987
No 352
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=90.17 E-value=0.19 Score=42.85 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
--|.|+|..|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999888764
No 353
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=90.16 E-value=0.19 Score=44.40 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNN 214 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~ 214 (518)
....|.|+|..|+|||||...+.+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCc
Confidence 35678999999999999999998753
No 354
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=90.09 E-value=0.16 Score=44.17 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
...-|.|+|..|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999988765
No 355
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=90.06 E-value=0.18 Score=44.67 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
....|.|+|..|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4577999999999999999999875
No 356
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=90.00 E-value=0.2 Score=43.06 Aligned_cols=22 Identities=18% Similarity=0.149 Sum_probs=19.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
--|.|+|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4589999999999999999864
No 357
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.00 E-value=0.19 Score=45.55 Aligned_cols=25 Identities=8% Similarity=-0.031 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
....|.|+|.+|+|||||...+.+.
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998875
No 358
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=90.00 E-value=0.17 Score=44.78 Aligned_cols=25 Identities=12% Similarity=0.030 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
..--|.|+|.+|+|||||...+.+.
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999877764
No 359
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=89.96 E-value=0.2 Score=44.10 Aligned_cols=24 Identities=13% Similarity=0.052 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
..-|.|+|.+|+|||||...+.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998875
No 360
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=89.92 E-value=0.36 Score=49.63 Aligned_cols=102 Identities=13% Similarity=0.114 Sum_probs=55.8
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHH-HHHHcCCCcccccc-eEEEEEcCCCC-CHHHHHHHHHhhcCCCCCC---
Q 010117 178 ELFDLLIEGPPRLSVVAILDSSGFEMTAFA-ADAFNNNHVKFYFD-CHAWVRVSIAY-DFGKILDDIINPVMPPSRV--- 251 (518)
Q Consensus 178 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA-~~v~~d~~~~~~F~-~~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~--- 251 (518)
+.++.|..=. .=..++|.|..|+|||+|| ..+.|. . +-+ .++++-+++.. .+.++..++.+.-......
T Consensus 151 kaID~l~Pig-rGQR~~Ifg~~g~GKT~l~l~~I~n~--~--~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~ 225 (513)
T 3oaa_A 151 KAVDSMIPIG-RGQRELIIGDRQTGKTALAIDAIINQ--R--DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVV 225 (513)
T ss_dssp HHHHHHSCCB-TTCBCEEEESSSSSHHHHHHHHHHTT--S--SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEE
T ss_pred eeeccccccc-cCCEEEeecCCCCCcchHHHHHHHhh--c--cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEE
Confidence 3455554321 1246899999999999996 566662 2 223 35778888775 4556666654421111100
Q ss_pred CccccCCHHH-----HHHHHHHHh--ccCcEEEEEcCCCC
Q 010117 252 SVIIGEDYQL-----KKSILQDYL--TAKKYFIVLDDVFD 284 (518)
Q Consensus 252 ~~~~~~~~~~-----~~~~l~~~L--~~kr~LlVLDdvw~ 284 (518)
...+.....+ ..-.+.+++ +|+..||++||+-.
T Consensus 226 atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 265 (513)
T 3oaa_A 226 ATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSK 265 (513)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHHH
T ss_pred ECCCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChHH
Confidence 0001111111 112234444 47999999999853
No 361
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=89.90 E-value=0.28 Score=53.74 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=31.9
Q ss_pred HHHHh--ccCcEEEEEcCC---CC--ChHHH-HHHhhhcCCCCCCcEEEEEecchhhhhhc
Q 010117 266 LQDYL--TAKKYFIVLDDV---FD--DSEIW-HDLVEFLPDNQNGSRVLITLLWFELQKGE 318 (518)
Q Consensus 266 l~~~L--~~kr~LlVLDdv---w~--~~~~~-~~l~~~l~~~~~gskIivTTR~~~va~~~ 318 (518)
+...+ ..++-|++||.. -+ |.... ..+...+.. .|+.+|++|.+.+.+..+
T Consensus 646 la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 646 VALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp HHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred HHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence 34445 668899999998 33 11111 123333332 488999999998887644
No 362
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=89.89 E-value=0.2 Score=43.87 Aligned_cols=24 Identities=13% Similarity=0.300 Sum_probs=20.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNN 214 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~ 214 (518)
--|.|+|..|+|||||...+.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 458899999999999999998753
No 363
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.88 E-value=0.16 Score=50.50 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
...++|+|..|.|||||++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 364
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=89.88 E-value=0.21 Score=43.74 Aligned_cols=25 Identities=12% Similarity=0.259 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
..--|.|+|..|+|||||...+.+.
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999998865
No 365
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=89.87 E-value=0.17 Score=50.90 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=20.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
++|.|.|+.|+||||||..+..
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 6899999999999999998886
No 366
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=89.84 E-value=0.16 Score=43.58 Aligned_cols=22 Identities=23% Similarity=0.123 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 010117 192 VVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~d 213 (518)
-|.|+|.+|+|||||...+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 5889999999999999988653
No 367
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=89.84 E-value=0.31 Score=46.04 Aligned_cols=37 Identities=5% Similarity=-0.005 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 176 REELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 176 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
..-+..+|....++..-|.++|++|.|||.+|..+.+
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 3445666655424456799999999999999999988
No 368
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=89.78 E-value=0.18 Score=43.78 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
...-|.|+|.+|+|||||...+.+.
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 3456899999999999999998764
No 369
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.77 E-value=0.24 Score=45.82 Aligned_cols=23 Identities=9% Similarity=-0.083 Sum_probs=18.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
-..|.|.|+.|+||||+++.+.+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 370
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=89.77 E-value=0.21 Score=43.58 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
...|.|+|..|+|||||...+.+.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 457899999999999999998854
No 371
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=89.75 E-value=0.18 Score=43.33 Aligned_cols=23 Identities=9% Similarity=0.222 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
--|.|+|..|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45899999999999999998865
No 372
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=89.72 E-value=0.3 Score=42.34 Aligned_cols=25 Identities=8% Similarity=0.219 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
...-|.|+|..|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999998875
No 373
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=89.71 E-value=0.17 Score=44.81 Aligned_cols=23 Identities=4% Similarity=-0.216 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.--|.|+|.+|+|||||.+.+.+
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 45689999999999999987765
No 374
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=89.71 E-value=0.17 Score=43.27 Aligned_cols=21 Identities=5% Similarity=-0.080 Sum_probs=18.9
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q 010117 193 VAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 193 i~I~G~gGvGKTtLA~~v~~d 213 (518)
|.|+|.+|+|||||...+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999998754
No 375
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=89.70 E-value=0.18 Score=44.30 Aligned_cols=22 Identities=5% Similarity=0.019 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 010117 192 VVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~d 213 (518)
-|.|+|.+|+|||||...+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998875
No 376
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=89.70 E-value=0.18 Score=44.60 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.--|.|+|.+|+|||||...+.+.
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 456889999999999999888765
No 377
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=89.67 E-value=0.15 Score=50.87 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
...+.++|+.|+|||++|+.+.+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 34588999999999999999998
No 378
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=89.65 E-value=0.19 Score=43.11 Aligned_cols=23 Identities=9% Similarity=0.108 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
--|.|+|..|+|||||...+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999998864
No 379
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=89.62 E-value=0.38 Score=49.60 Aligned_cols=106 Identities=12% Similarity=0.118 Sum_probs=57.1
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHH-HHHHcCCCc----ccccc-eEEEEEcCCCC-CHHHHHHHHHhhcCCCCC
Q 010117 178 ELFDLLIEGPPRLSVVAILDSSGFEMTAFA-ADAFNNNHV----KFYFD-CHAWVRVSIAY-DFGKILDDIINPVMPPSR 250 (518)
Q Consensus 178 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA-~~v~~d~~~----~~~F~-~~~wv~vs~~~-~~~~i~~~i~~~l~~~~~ 250 (518)
+.++.|..=. .=..++|+|..|+|||+|| ..+.|.... .++-+ .++++-+++.. .+.++.+++...=.....
T Consensus 151 raID~l~Pig-rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~t 229 (510)
T 2ck3_A 151 KAVDSLVPIG-RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYT 229 (510)
T ss_dssp HHHHHHSCCB-TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGE
T ss_pred eeeccccccc-cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccc
Confidence 4555555421 2246899999999999995 466663211 01234 36777888765 455666666542111100
Q ss_pred C---CccccCCHHHH-----HHHHHHHh--ccCcEEEEEcCCCC
Q 010117 251 V---SVIIGEDYQLK-----KSILQDYL--TAKKYFIVLDDVFD 284 (518)
Q Consensus 251 ~---~~~~~~~~~~~-----~~~l~~~L--~~kr~LlVLDdvw~ 284 (518)
. ...+....... .-.+.+++ .|+..||++||+-.
T Consensus 230 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 230 IVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred eEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence 0 00011111111 22344444 47899999999854
No 380
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=89.58 E-value=0.29 Score=50.87 Aligned_cols=38 Identities=13% Similarity=0.056 Sum_probs=29.0
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcC
Q 010117 172 FERGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.+..++.+...+..+ .-|.++|++|+|||+||+.+.+.
T Consensus 27 q~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 27 RSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp CHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHH
Confidence 345556666666554 36889999999999999999983
No 381
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.55 E-value=0.63 Score=55.92 Aligned_cols=89 Identities=12% Similarity=-0.031 Sum_probs=59.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCC-ccccCCHHHHHHHHH
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVS-VIIGEDYQLKKSILQ 267 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~-~~~~~~~~~~~~~l~ 267 (518)
.-+++-|.|.+|+||||||.++... ....=..++|++.-..++... ++.++.....- .....+.+++...++
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~--~a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 3469999999999999999998874 222223578888887777542 44555433210 013446677777776
Q ss_pred HHhc-cCcEEEEEcCCCC
Q 010117 268 DYLT-AKKYFIVLDDVFD 284 (518)
Q Consensus 268 ~~L~-~kr~LlVLDdvw~ 284 (518)
...+ ++.-+||+|-+..
T Consensus 455 ~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHTCCSEEEESCGGG
T ss_pred HHHHhcCCcEEEECCHHH
Confidence 6553 3556999999864
No 382
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=89.53 E-value=0.16 Score=44.22 Aligned_cols=23 Identities=4% Similarity=0.065 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
--|.++|.+|+|||||...+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45889999999999999998864
No 383
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=89.52 E-value=0.19 Score=43.53 Aligned_cols=26 Identities=8% Similarity=0.079 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNN 214 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~ 214 (518)
...-|.|+|..|+|||||...+.+..
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 35678999999999999999988653
No 384
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=89.49 E-value=0.19 Score=44.66 Aligned_cols=23 Identities=13% Similarity=0.007 Sum_probs=20.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
..|+|+|.+|+|||||...+.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999998864
No 385
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=89.47 E-value=0.19 Score=44.02 Aligned_cols=26 Identities=8% Similarity=0.124 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNN 214 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~ 214 (518)
...-|.|+|..|+|||||...+.+..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 34568999999999999999988653
No 386
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=89.47 E-value=0.18 Score=50.27 Aligned_cols=125 Identities=12% Similarity=0.026 Sum_probs=66.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCccc---ccce------------------EEEEEcCCCC------CHH--------
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKF---YFDC------------------HAWVRVSIAY------DFG-------- 235 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~---~F~~------------------~~wv~vs~~~------~~~-------- 235 (518)
.+++|+|+.|+|||||.+.+..-..... .|+. +.+| .|++ ++.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v--~Q~~~l~~~ltv~eni~~~~~ 107 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMV--FQSYALYPHMTVYDNIAFPLK 107 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEE--CSCCCCCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEE--eCCCccCCCCCHHHHHHHHHH
Confidence 5899999999999999999975321110 0111 2222 2221 111
Q ss_pred ----------HHHHHHHhhcCCCCCC-CccccCCHHHHH-HHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC--C
Q 010117 236 ----------KILDDIINPVMPPSRV-SVIIGEDYQLKK-SILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD--N 299 (518)
Q Consensus 236 ----------~i~~~i~~~l~~~~~~-~~~~~~~~~~~~-~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~--~ 299 (518)
+-..++++.++..... ..+...+..+.+ -.|...|..+.=+|+||.--. |...-..+...+.. .
T Consensus 108 ~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 187 (372)
T 1g29_1 108 LRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQR 187 (372)
T ss_dssp HTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHH
Confidence 1233455555443211 112333444433 356677777788999999766 43322222222221 1
Q ss_pred CCCcEEEEEecchhhhhh
Q 010117 300 QNGSRVLITLLWFELQKG 317 (518)
Q Consensus 300 ~~gskIivTTR~~~va~~ 317 (518)
..|..||++|.+...+..
T Consensus 188 ~~g~tvi~vTHd~~~a~~ 205 (372)
T 1g29_1 188 QLGVTTIYVTHDQVEAMT 205 (372)
T ss_dssp HHTCEEEEEESCHHHHHH
T ss_pred hcCCEEEEECCCHHHHHH
Confidence 126678888888665543
No 387
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=89.43 E-value=0.13 Score=48.64 Aligned_cols=24 Identities=13% Similarity=0.110 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
+...|.|.|..|+||||+|+.+..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998776
No 388
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=89.42 E-value=0.21 Score=43.37 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
...-|.|+|..|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998765
No 389
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=89.41 E-value=0.2 Score=43.56 Aligned_cols=24 Identities=8% Similarity=0.030 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.--|.|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 446889999999999999998764
No 390
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=89.36 E-value=0.19 Score=50.16 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+++|+|+.|+|||||.+.+.-
T Consensus 38 e~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHHc
Confidence 5899999999999999999875
No 391
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=89.31 E-value=0.34 Score=45.07 Aligned_cols=52 Identities=10% Similarity=-0.003 Sum_probs=31.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDII 242 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 242 (518)
-.+|.|.|..|+||||+++.+...-. ...+..+....-.......+.+++++
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~~~~~~rep~~t~~g~~ir~~l 78 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ-QNGIDHITRTREPGGTLLAEKLRALV 78 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH-HTTCCCEEEEESSCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCCCeeeeecCCCCCHHHHHHHHHH
Confidence 46899999999999999999987321 12344344443332222334444444
No 392
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=89.29 E-value=0.15 Score=45.64 Aligned_cols=23 Identities=9% Similarity=0.002 Sum_probs=20.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
..|+|+|.+|+|||||...+.++
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999998764
No 393
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=89.28 E-value=0.2 Score=43.39 Aligned_cols=23 Identities=9% Similarity=0.095 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.-|.|+|..|+|||||...+.++
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999998764
No 394
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=89.27 E-value=0.36 Score=44.12 Aligned_cols=51 Identities=10% Similarity=0.036 Sum_probs=32.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCccc-ccceEEEEEcCCCCCHHHHHHHHHh
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKF-YFDCHAWVRVSIAYDFGKILDDIIN 243 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~-~F~~~~wv~vs~~~~~~~i~~~i~~ 243 (518)
..|.|.|..|+||||+++.+... ... .+..+....-.....+.+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~--l~~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVET--LEQLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHH--HHHTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--HHHcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 57999999999999999999873 322 2323344433333334455566554
No 395
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=89.26 E-value=0.25 Score=43.20 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNN 214 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~ 214 (518)
..-|.|+|..|+|||||...+.+..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 4568899999999999999988653
No 396
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=89.25 E-value=0.23 Score=49.17 Aligned_cols=24 Identities=13% Similarity=-0.022 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
...+|+|+|.+|+|||||...+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999999998875
No 397
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.24 E-value=0.56 Score=55.58 Aligned_cols=89 Identities=12% Similarity=-0.031 Sum_probs=59.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCC-ccccCCHHHHHHHHH
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVS-VIIGEDYQLKKSILQ 267 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~-~~~~~~~~~~~~~l~ 267 (518)
.-+++-|.|.+|+||||||.++... ....=..++|++.-..++... ++.++.....- .....+.+++...+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~--~~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 3478999999999999999998763 222224688998888877642 44555432210 013345677777776
Q ss_pred HHhc-cCcEEEEEcCCCC
Q 010117 268 DYLT-AKKYFIVLDDVFD 284 (518)
Q Consensus 268 ~~L~-~kr~LlVLDdvw~ 284 (518)
...+ .+--+||+|-+..
T Consensus 455 ~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHHHTCCSEEEESCSTT
T ss_pred HHHHhcCCCEEEECCHHH
Confidence 6554 3456999999865
No 398
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=89.18 E-value=0.28 Score=42.19 Aligned_cols=24 Identities=17% Similarity=-0.010 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
...|.|+|..|+|||||...+.+.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999764
No 399
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=89.17 E-value=0.25 Score=43.12 Aligned_cols=23 Identities=9% Similarity=0.065 Sum_probs=20.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
--|.|+|..|+|||||...+.++
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999988764
No 400
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.17 E-value=0.15 Score=50.62 Aligned_cols=125 Identities=16% Similarity=0.071 Sum_probs=66.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCccc---ccc-----------------eEEEEEcCC----CCCH------------
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKF---YFD-----------------CHAWVRVSI----AYDF------------ 234 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~---~F~-----------------~~~wv~vs~----~~~~------------ 234 (518)
.+++|+|+.|+|||||.+.+.--..-.. .|+ .+.+|.=.. ..++
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~ 111 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK 111 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999875211100 011 122221110 0011
Q ss_pred ------HHHHHHHHhhcCCCCCC-CccccCCHHHHH-HHHHHHhccCcEEEEEcCCCC--ChH----HHHHHhhhcCCCC
Q 010117 235 ------GKILDDIINPVMPPSRV-SVIIGEDYQLKK-SILQDYLTAKKYFIVLDDVFD--DSE----IWHDLVEFLPDNQ 300 (518)
Q Consensus 235 ------~~i~~~i~~~l~~~~~~-~~~~~~~~~~~~-~~l~~~L~~kr~LlVLDdvw~--~~~----~~~~l~~~l~~~~ 300 (518)
.+-..++++.++..... ..+...+..+.+ -.|...|..+.=+|+||.--. |.. .++.+..... .
T Consensus 112 ~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~--~ 189 (353)
T 1oxx_K 112 MSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS--R 189 (353)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHH--H
T ss_pred CCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHH--h
Confidence 12234555555543211 112333444433 356777777888999999765 332 2333332211 1
Q ss_pred CCcEEEEEecchhhhhh
Q 010117 301 NGSRVLITLLWFELQKG 317 (518)
Q Consensus 301 ~gskIivTTR~~~va~~ 317 (518)
.|..||++|.+...+..
T Consensus 190 ~g~tvi~vTHd~~~~~~ 206 (353)
T 1oxx_K 190 LGVTLLVVSHDPADIFA 206 (353)
T ss_dssp HCCEEEEEESCHHHHHH
T ss_pred cCCEEEEEeCCHHHHHH
Confidence 26678888888665543
No 401
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=89.16 E-value=0.27 Score=44.62 Aligned_cols=29 Identities=10% Similarity=0.243 Sum_probs=23.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcccccc
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVKFYFD 221 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~ 221 (518)
+.|+|-|.-|+||||+++.+.+ .....++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~--~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYH--RLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH--HHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHH--HHHCCCC
Confidence 5789999999999999999987 4434444
No 402
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=89.16 E-value=0.31 Score=47.17 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHH
Q 010117 176 REELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAF 211 (518)
Q Consensus 176 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~ 211 (518)
++++.+.+.. .+++++|+.|+|||||.+.+.
T Consensus 156 i~~L~~~l~G-----~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLEG-----FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTTT-----CEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhccC-----cEEEEECCCCCCHHHHHHHHH
Confidence 5556665542 489999999999999999988
No 403
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=89.10 E-value=0.2 Score=44.64 Aligned_cols=25 Identities=4% Similarity=0.064 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
...-|.|+|.+|+|||||.+.+.+.
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhc
Confidence 3456899999999999999977763
No 404
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=89.09 E-value=0.21 Score=44.17 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
...-|.|+|..|+|||||...+.+.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3456899999999999999998865
No 405
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=89.08 E-value=0.22 Score=43.44 Aligned_cols=24 Identities=8% Similarity=0.044 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.--|.|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 345889999999999999998865
No 406
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=89.06 E-value=0.22 Score=43.85 Aligned_cols=25 Identities=20% Similarity=0.102 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
...-|.|+|..|+|||||...+.+.
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999999864
No 407
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=89.06 E-value=0.17 Score=48.92 Aligned_cols=20 Identities=15% Similarity=0.355 Sum_probs=18.4
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q 010117 193 VAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 193 i~I~G~gGvGKTtLA~~v~~ 212 (518)
|+|+|..|+|||||.+.++.
T Consensus 21 I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 49999999999999999875
No 408
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=89.03 E-value=0.22 Score=44.53 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNN 214 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~ 214 (518)
...-|.|+|..|+|||||...+..+.
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC
Confidence 35678999999999999999987653
No 409
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=89.00 E-value=0.19 Score=49.65 Aligned_cols=35 Identities=17% Similarity=0.139 Sum_probs=25.9
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcC
Q 010117 178 ELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 178 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.+++.++.=. .=.+++|+|..|+|||||.+.+.+.
T Consensus 60 ~ald~ll~i~-~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 60 RAIDGLLTCG-IGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp HHHHHHSCEE-TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEeeeeec-CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3455553311 2358999999999999999999984
No 410
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=89.00 E-value=0.22 Score=43.37 Aligned_cols=24 Identities=8% Similarity=0.152 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
..-|.|+|.+|+|||||...+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456899999999999999998865
No 411
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=88.93 E-value=0.17 Score=45.27 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHH
Q 010117 189 RLSVVAILDSSGFEMTAFAADAF 211 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~ 211 (518)
....|.|+|.+|+|||||...+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 35678999999999999999885
No 412
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=88.89 E-value=0.21 Score=46.02 Aligned_cols=107 Identities=16% Similarity=0.127 Sum_probs=54.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCC------CCccccCCHHHHHHH
Q 010117 192 VVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSR------VSVIIGEDYQLKKSI 265 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~------~~~~~~~~~~~~~~~ 265 (518)
.|.+.|.||+||||+|..+.... ....++ +..+.+...-+... ...+..+..... .......+....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l-~~~G~~-V~v~d~D~q~~~~~--~al~~gl~~~~~~~~~~~~~~~~e~~l~~~--- 80 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQ-LRQGVR-VMAGVVETHGRAET--EALLNGLPQQPLLRTEYRGMTLEEMDLDAL--- 80 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH-HHTTCC-EEEEECCCTTCHHH--HHHHTTSCBCCCEEEEETTEEEEECCHHHH---
T ss_pred EEEEECCCCCcHHHHHHHHHHHH-HHCCCC-EEEEEeCCCCChhH--HHHhcCccccCcceeecCCcccccccHHHH---
Confidence 47788999999999988777631 122233 33444443222221 112232222100 000011233222
Q ss_pred HHHHhccCcEEEEEcCCCC-------ChHHHHHHhhhcCCCCCCcEEEEEecch
Q 010117 266 LQDYLTAKKYFIVLDDVFD-------DSEIWHDLVEFLPDNQNGSRVLITLLWF 312 (518)
Q Consensus 266 l~~~L~~kr~LlVLDdvw~-------~~~~~~~l~~~l~~~~~gskIivTTR~~ 312 (518)
+..+.=++|+|+.-. ...-|..+...++. |..++.|+...
T Consensus 81 ----L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~s---gidVitT~Nlq 127 (228)
T 2r8r_A 81 ----LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAA---GIDVYTTVNVQ 127 (228)
T ss_dssp ----HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHT---TCEEEEEEEGG
T ss_pred ----HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcC---CCCEEEEcccc
Confidence 223455999998764 13467777665543 55688887744
No 413
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=88.84 E-value=0.13 Score=46.38 Aligned_cols=24 Identities=17% Similarity=-0.061 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
-..|+|+|..|+|||||.+.+...
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999887753
No 414
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=88.82 E-value=0.37 Score=44.33 Aligned_cols=24 Identities=8% Similarity=-0.107 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.-.+|.|.|..|+||||+++.+.+
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 415
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.77 E-value=0.24 Score=43.12 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNN 214 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~ 214 (518)
.--|.|+|..|+|||||...+.+..
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 4568999999999999999987653
No 416
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=88.74 E-value=0.27 Score=44.37 Aligned_cols=26 Identities=8% Similarity=-0.004 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNN 214 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~ 214 (518)
....|.|+|.+|+|||||...+.+..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999988753
No 417
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.72 E-value=0.23 Score=44.14 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
..-|.|+|.+|+|||||...+.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999998875
No 418
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=88.70 E-value=0.24 Score=44.18 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNN 214 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~ 214 (518)
..-|.|+|.+|+|||||...+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568999999999999999988753
No 419
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=88.70 E-value=1 Score=49.60 Aligned_cols=34 Identities=15% Similarity=0.268 Sum_probs=24.8
Q ss_pred hhHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHH
Q 010117 174 RGREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAF 211 (518)
Q Consensus 174 ~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~ 211 (518)
...+.|...+..+ .++.|+|..|.||||+...+.
T Consensus 97 ~q~~~i~~~l~~~----~~vii~gpTGSGKTtllp~ll 130 (773)
T 2xau_A 97 AQRDEFLKLYQNN----QIMVFVGETGSGKTTQIPQFV 130 (773)
T ss_dssp GGHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHhCC----CeEEEECCCCCCHHHHHHHHH
Confidence 4456666666654 489999999999999555443
No 420
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=88.69 E-value=0.48 Score=52.06 Aligned_cols=71 Identities=15% Similarity=0.184 Sum_probs=43.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCCCCCCccccCCHHHHHHHHHHH
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPPSRVSVIIGEDYQLKKSILQDY 269 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 269 (518)
.+-|.++|++|.|||.||+.+.+ +....| +.++. . +++.... ......+...+...
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~--e~~~~f-----~~v~~----~----~l~s~~v---------Gese~~vr~lF~~A 566 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIAN--ECQANF-----ISIKG----P----ELLTMWF---------GESEANVREIFDKA 566 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHH--TTTCEE-----EECCH----H----HHHTTTC---------SSCHHHHHHHHHHH
T ss_pred CceEEEecCCCCCchHHHHHHHH--HhCCce-----EEecc----c----hhhcccc---------chHHHHHHHHHHHH
Confidence 44578999999999999999999 444333 33322 1 2222111 12233444444444
Q ss_pred hccCcEEEEEcCCCC
Q 010117 270 LTAKKYFIVLDDVFD 284 (518)
Q Consensus 270 L~~kr~LlVLDdvw~ 284 (518)
-+...+.|++|++..
T Consensus 567 r~~~P~IifiDEiDs 581 (806)
T 3cf2_A 567 RQAAPCVLFFDELDS 581 (806)
T ss_dssp HTTCSEEEECSCGGG
T ss_pred HHcCCceeechhhhH
Confidence 456789999999864
No 421
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=88.67 E-value=1.6 Score=44.42 Aligned_cols=26 Identities=19% Similarity=0.068 Sum_probs=23.1
Q ss_pred CCCceEEEEEcCCCccHHHHHHHHHc
Q 010117 187 PPRLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 187 ~~~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
....++..|.|.+|.||||+.+...+
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhc
Confidence 35788999999999999999998876
No 422
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=88.64 E-value=0.28 Score=43.79 Aligned_cols=25 Identities=32% Similarity=0.323 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
...-|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4567899999999999999998765
No 423
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=88.59 E-value=0.24 Score=43.98 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNN 214 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~ 214 (518)
.--|.|+|..|+|||||...+.+..
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4568999999999999999988653
No 424
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=88.58 E-value=0.29 Score=44.83 Aligned_cols=25 Identities=4% Similarity=0.050 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
....|.|+|.+|+|||||...+.+.
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999998875
No 425
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=88.57 E-value=0.24 Score=44.74 Aligned_cols=25 Identities=12% Similarity=0.024 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
...-|.|+|.+|+|||||...+.+.
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999999875
No 426
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=88.54 E-value=0.23 Score=44.18 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
..-|.|+|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 45689999999999999998874
No 427
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=88.48 E-value=0.24 Score=44.25 Aligned_cols=26 Identities=23% Similarity=0.211 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNN 214 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~ 214 (518)
...-|.|+|.+|+|||||...+.+..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 35678999999999999999988753
No 428
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=88.47 E-value=0.4 Score=42.33 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNN 214 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~ 214 (518)
...-|.|+|..|+|||||...+.++.
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 45568999999999999999998753
No 429
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=88.42 E-value=0.19 Score=49.94 Aligned_cols=22 Identities=14% Similarity=0.252 Sum_probs=20.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+++|+|..|.|||||++.+..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999987
No 430
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=88.36 E-value=0.24 Score=43.46 Aligned_cols=26 Identities=12% Similarity=0.008 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNN 214 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~ 214 (518)
...-|.|+|..|+|||||...+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999999999998754
No 431
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=88.35 E-value=0.27 Score=47.53 Aligned_cols=25 Identities=8% Similarity=0.163 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
....|+|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3468999999999999999999864
No 432
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=88.35 E-value=0.28 Score=43.51 Aligned_cols=26 Identities=8% Similarity=-0.091 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNN 214 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~ 214 (518)
....|.|+|..|+|||||...+.+..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 46789999999999999999988753
No 433
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=88.33 E-value=0.26 Score=43.48 Aligned_cols=25 Identities=12% Similarity=0.183 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNN 214 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~ 214 (518)
..-|.|+|..|+|||||...+.+..
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 4678999999999999999988653
No 434
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=88.32 E-value=0.26 Score=43.70 Aligned_cols=26 Identities=4% Similarity=0.060 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNN 214 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~ 214 (518)
..--|.|+|..|+|||||...+.+..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCC
Confidence 34568899999999999999988753
No 435
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.32 E-value=0.25 Score=44.40 Aligned_cols=25 Identities=12% Similarity=0.169 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
...-|.|+|..|+|||||...+.+.
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 4567899999999999999988764
No 436
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=88.31 E-value=0.26 Score=43.61 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.--|.|+|..|+|||||...+.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999998865
No 437
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=88.30 E-value=0.26 Score=44.23 Aligned_cols=42 Identities=14% Similarity=0.012 Sum_probs=26.8
Q ss_pred eEEEEE-cCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCH
Q 010117 191 SVVAIL-DSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDF 234 (518)
Q Consensus 191 ~vi~I~-G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~ 234 (518)
++|+|+ +-||+||||+|..+... ....=..++-|......+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~--la~~g~~vlliD~D~~~~~ 44 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATA--LSRSGYNIAVVDTDPQMSL 44 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHH--HHHTTCCEEEEECCTTCHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHH--HHHCCCeEEEEECCCCCCH
Confidence 678887 66999999999887762 2222123555665544433
No 438
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=88.29 E-value=0.32 Score=42.90 Aligned_cols=24 Identities=8% Similarity=-0.063 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
..-|.|+|..|+|||||...+.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999999865
No 439
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=88.23 E-value=0.21 Score=45.44 Aligned_cols=22 Identities=9% Similarity=0.024 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+|+|.|+.|+||||+++.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998876
No 440
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=88.15 E-value=0.26 Score=43.69 Aligned_cols=25 Identities=8% Similarity=0.060 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNN 214 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~ 214 (518)
.--|.|+|..|+|||||...+....
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 3468899999999999999998763
No 441
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=88.09 E-value=0.26 Score=44.12 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
...-|.|+|..|+|||||...+.+.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3556889999999999999998764
No 442
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=88.09 E-value=0.27 Score=43.87 Aligned_cols=25 Identities=8% Similarity=0.173 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
...-|.|+|..|+|||||...+.+.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3567899999999999999998764
No 443
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.06 E-value=0.25 Score=43.74 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.--|.|+|..|+|||||...+.+.
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 456899999999999999998865
No 444
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=88.05 E-value=0.27 Score=43.86 Aligned_cols=24 Identities=8% Similarity=0.047 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
..-|.|+|..|+|||||...+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999998865
No 445
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.04 E-value=0.29 Score=43.11 Aligned_cols=34 Identities=15% Similarity=0.087 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcC
Q 010117 177 EELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 177 ~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
..+.+ +... ....|.|+|..|+|||||...+.+.
T Consensus 6 ~~~~~-~~~~--~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 6 TRIWR-LFNH--QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHH-HHTT--SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHH-hcCC--CccEEEEECCCCCCHHHHHHHHhcC
Confidence 34555 3332 3567899999999999999999864
No 446
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=88.00 E-value=0.28 Score=43.27 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
..-|.|+|..|+|||||...+.+.
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999998875
No 447
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=87.98 E-value=0.23 Score=52.25 Aligned_cols=23 Identities=17% Similarity=-0.031 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
-.+|.|+|+.|+|||||++.+..
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHH
Confidence 36899999999999999999987
No 448
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=87.96 E-value=0.24 Score=44.00 Aligned_cols=24 Identities=4% Similarity=-0.139 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
..-|.|+|.+|+|||||...+.+.
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 456999999999999999998764
No 449
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=87.95 E-value=0.28 Score=43.22 Aligned_cols=25 Identities=12% Similarity=0.167 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
...-|.|+|..|+|||||...+.+.
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3567899999999999999998764
No 450
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.94 E-value=0.25 Score=43.78 Aligned_cols=24 Identities=8% Similarity=0.127 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
..-|.|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 456899999999999999998764
No 451
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=87.86 E-value=0.35 Score=44.72 Aligned_cols=26 Identities=8% Similarity=0.141 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNN 214 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~ 214 (518)
....|+|+|..|+|||||...+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 45679999999999999999998753
No 452
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=87.85 E-value=0.18 Score=49.56 Aligned_cols=22 Identities=9% Similarity=-0.016 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 010117 192 VVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~d 213 (518)
-+.|+|..|+|||+||+.+.+.
T Consensus 47 ~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHHh
Confidence 3889999999999999999873
No 453
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=87.82 E-value=1.1 Score=52.28 Aligned_cols=23 Identities=17% Similarity=0.089 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
-.+++|+|..|.|||||++.+..
T Consensus 1059 Ge~v~ivG~sGsGKSTl~~~l~g 1081 (1284)
T 3g5u_A 1059 GQTLALVGSSGCGKSTVVQLLER 1081 (1284)
T ss_dssp SSEEEEECSSSTTHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999975
No 454
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=87.78 E-value=0.28 Score=43.92 Aligned_cols=25 Identities=12% Similarity=0.165 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
...-|.|+|..|+|||||...+.+.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999998765
No 455
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=87.74 E-value=0.43 Score=46.06 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=26.5
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcC
Q 010117 175 GREELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 175 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
-++++...+.. .+++|+|+.|+|||||.+.+...
T Consensus 159 gv~~lf~~l~g-----eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 159 GIEELKEYLKG-----KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp THHHHHHHHSS-----SEEEEECSTTSSHHHHHHHHSTT
T ss_pred CHHHHHHHhcC-----CeEEEECCCCCcHHHHHHHhccc
Confidence 35556665543 48999999999999999999863
No 456
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=87.72 E-value=0.32 Score=46.07 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
...|+++|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999998864
No 457
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=87.71 E-value=0.33 Score=43.59 Aligned_cols=24 Identities=8% Similarity=0.045 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.--|.|+|..|+|||||...+.++
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999888765
No 458
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=87.65 E-value=0.28 Score=42.93 Aligned_cols=24 Identities=17% Similarity=-0.050 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
..-|.|+|..|+|||||...+.+.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999864
No 459
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=87.65 E-value=0.43 Score=49.86 Aligned_cols=59 Identities=10% Similarity=0.104 Sum_probs=40.8
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCC-CHHHHHHHH
Q 010117 178 ELFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAY-DFGKILDDI 241 (518)
Q Consensus 178 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~-~~~~i~~~i 241 (518)
++++.|..-. +=..++|.|..|+|||+|++++.+.. +-+.++++-+++.. .+.+++.++
T Consensus 221 rvID~l~Pig-rGqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 221 RVIDTFFPVT-KGGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp HHHHHHSCCB-TTCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHHHT
T ss_pred hhhhccCCcc-CCCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHH
Confidence 4566665421 23578999999999999999998842 23567888888764 445555554
No 460
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.65 E-value=0.29 Score=43.98 Aligned_cols=24 Identities=4% Similarity=-0.004 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
..-|.|+|..|+|||||...+.++
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999998875
No 461
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=87.63 E-value=0.22 Score=51.27 Aligned_cols=22 Identities=18% Similarity=0.153 Sum_probs=20.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+++|+|..|+|||||++.+..
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999876
No 462
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=87.62 E-value=0.28 Score=44.43 Aligned_cols=24 Identities=13% Similarity=0.095 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.--|.|+|.+|+|||||...+.+.
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999998764
No 463
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=87.62 E-value=0.29 Score=43.51 Aligned_cols=22 Identities=9% Similarity=-0.136 Sum_probs=18.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.++.|+|+.|+||||++..+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999865554
No 464
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=87.58 E-value=0.29 Score=44.57 Aligned_cols=24 Identities=13% Similarity=0.116 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
...-|.|+|.+|+|||||...+..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 345689999999999999998874
No 465
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=87.50 E-value=0.25 Score=43.82 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
..-|.|+|..|+|||||...+.++
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC-
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998765
No 466
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=87.50 E-value=0.29 Score=44.18 Aligned_cols=23 Identities=17% Similarity=0.001 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
..+|.|.|+.|+||||+|+.+..
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~ 28 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAE 28 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHH
Confidence 35899999999999999999988
No 467
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=87.43 E-value=0.31 Score=44.57 Aligned_cols=22 Identities=9% Similarity=0.141 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 010117 192 VVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~d 213 (518)
-|.|+|-+|+|||+|...+.++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4788999999999999988764
No 468
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=87.43 E-value=0.48 Score=43.75 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=17.7
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q 010117 193 VAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 193 i~I~G~gGvGKTtLA~~v~~ 212 (518)
|+|.|-||+||||+|..+..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~ 22 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIK 22 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHH
Confidence 66789999999999988876
No 469
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=87.41 E-value=0.27 Score=49.86 Aligned_cols=22 Identities=14% Similarity=0.332 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 010117 192 VVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 192 vi~I~G~gGvGKTtLA~~v~~d 213 (518)
-++|+|..|+|||||.+.++.-
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3999999999999999998763
No 470
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=87.36 E-value=0.31 Score=43.65 Aligned_cols=25 Identities=8% Similarity=0.013 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
...-|.|+|..|+|||||...+.+.
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhhC
Confidence 4567899999999999999998765
No 471
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=87.31 E-value=0.42 Score=42.02 Aligned_cols=25 Identities=16% Similarity=-0.012 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
...-|.|+|..|+|||||...+.++
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 4566999999999999999988654
No 472
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=87.30 E-value=0.33 Score=50.80 Aligned_cols=24 Identities=8% Similarity=0.041 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
...+|.++|+.|.||||+|+.+..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999875
No 473
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=87.21 E-value=0.33 Score=43.44 Aligned_cols=24 Identities=8% Similarity=0.008 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
..-|.|+|..|+|||||...+.++
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999998875
No 474
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=87.20 E-value=0.39 Score=46.52 Aligned_cols=26 Identities=12% Similarity=0.238 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHcC
Q 010117 188 PRLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 188 ~~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.....|+|+|.+|+|||||...+...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 45789999999999999999998865
No 475
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=87.19 E-value=0.31 Score=43.11 Aligned_cols=24 Identities=8% Similarity=0.120 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
..-|.|+|..|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999875
No 476
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.19 E-value=0.27 Score=42.93 Aligned_cols=25 Identities=16% Similarity=0.009 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
....|.|+|..|+|||||...+.+.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999988753
No 477
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=87.17 E-value=0.3 Score=45.10 Aligned_cols=23 Identities=13% Similarity=-0.034 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
...++|.|+.|+||||+|+.+..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHH
Confidence 45689999999999999998876
No 478
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=87.16 E-value=0.32 Score=43.74 Aligned_cols=24 Identities=8% Similarity=-0.013 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.--|.|+|.+|+|||||...+.+.
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999998765
No 479
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.16 E-value=0.33 Score=43.60 Aligned_cols=24 Identities=8% Similarity=0.252 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
..-|.|+|..|+|||||...+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999998865
No 480
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=87.10 E-value=0.39 Score=43.50 Aligned_cols=25 Identities=8% Similarity=-0.021 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNN 214 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~ 214 (518)
.--|.|+|.+|+|||||...+.+..
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568899999999999999987653
No 481
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=87.08 E-value=0.33 Score=48.11 Aligned_cols=23 Identities=9% Similarity=0.131 Sum_probs=20.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.+++|+|..|+|||||.+.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 48999999999999999999873
No 482
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=87.03 E-value=1.5 Score=51.22 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
-..++|||..|.|||||++.+..-
T Consensus 444 G~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 444 GQTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp TCEEEEEECSSSCHHHHHHHHTTS
T ss_pred CcEEEEEecCCCcHHHHHHHhccc
Confidence 368999999999999999999764
No 483
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=86.98 E-value=0.3 Score=49.92 Aligned_cols=34 Identities=12% Similarity=0.106 Sum_probs=25.5
Q ss_pred HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHHcC
Q 010117 179 LFDLLIEGPPRLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 179 l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
+++-++.=. .=.+++|+|..|+|||||.+.+.+-
T Consensus 147 vld~vl~i~-~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 147 AINALLTVG-RGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp HHHHHSCCB-TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEeeeEEec-CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 445453321 2368999999999999999999884
No 484
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=86.89 E-value=0.32 Score=51.15 Aligned_cols=126 Identities=13% Similarity=0.069 Sum_probs=66.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcc-cc--cce-EEEEEcCC----CCCHHHHHHH--------------HHhhcCCC
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVK-FY--FDC-HAWVRVSI----AYDFGKILDD--------------IINPVMPP 248 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~-~~--F~~-~~wv~vs~----~~~~~~i~~~--------------i~~~l~~~ 248 (518)
.+++|+|+.|.|||||++.++.-.... .. +.. +.++.-.. ..++.+++.. +++.++..
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 392 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGII 392 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCh
Confidence 589999999999999999998742211 11 111 23332111 1233333222 22222221
Q ss_pred CC-CCccccCCHHHH-HHHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC--CCCCcEEEEEecchhhhh
Q 010117 249 SR-VSVIIGEDYQLK-KSILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD--NQNGSRVLITLLWFELQK 316 (518)
Q Consensus 249 ~~-~~~~~~~~~~~~-~~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~--~~~gskIivTTR~~~va~ 316 (518)
.. ...+...+..+. .-.|...|..+.=+|+||.--. |...-..+...+.. ...|..||++|.+...+.
T Consensus 393 ~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~ 466 (538)
T 1yqt_A 393 DLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMID 466 (538)
T ss_dssp GGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHH
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 11 011233333333 3456777888888999999766 44433333333321 112556888888866554
No 485
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=86.85 E-value=1.8 Score=50.42 Aligned_cols=23 Identities=17% Similarity=0.086 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
-.+++|+|..|.|||||++.+..
T Consensus 416 G~~~~ivG~sGsGKSTl~~ll~g 438 (1284)
T 3g5u_A 416 GQTVALVGNSGCGKSTTVQLMQR 438 (1284)
T ss_dssp TCEEEEECCSSSSHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999875
No 486
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=86.84 E-value=0.28 Score=44.50 Aligned_cols=26 Identities=12% Similarity=-0.032 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcCC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNNN 214 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d~ 214 (518)
....|+|+|..|+|||||...+....
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 45678999999999999999998764
No 487
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=86.82 E-value=0.44 Score=42.98 Aligned_cols=24 Identities=4% Similarity=-0.180 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
...+|+|+|+.|+||+|.|..+.+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHH
Confidence 467999999999999999988765
No 488
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=86.66 E-value=0.3 Score=51.27 Aligned_cols=125 Identities=13% Similarity=0.040 Sum_probs=64.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCcc-cc--cce--EEEEEcCCC------CCHHHHHH---------------HHHhh
Q 010117 191 SVVAILDSSGFEMTAFAADAFNNNHVK-FY--FDC--HAWVRVSIA------YDFGKILD---------------DIINP 244 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~d~~~~-~~--F~~--~~wv~vs~~------~~~~~i~~---------------~i~~~ 244 (518)
.+++|+|+.|+|||||++.++.-..-. .. ++. ..++ .+. .++.+.+. ++++.
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~--~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~ 372 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYK--PQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKR 372 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEE--CSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEee--chhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHH
Confidence 489999999999999999998632111 10 111 2222 221 12333222 22222
Q ss_pred cCCCCC-CCccccCCHHHH-HHHHHHHhccCcEEEEEcCCCC--ChHHHHHHhhhcCC--CCCCcEEEEEecchhhhhh
Q 010117 245 VMPPSR-VSVIIGEDYQLK-KSILQDYLTAKKYFIVLDDVFD--DSEIWHDLVEFLPD--NQNGSRVLITLLWFELQKG 317 (518)
Q Consensus 245 l~~~~~-~~~~~~~~~~~~-~~~l~~~L~~kr~LlVLDdvw~--~~~~~~~l~~~l~~--~~~gskIivTTR~~~va~~ 317 (518)
++.... ...+...+-.+. .-.|...|..+.=+|+||.--. |...-..+...+.. ...|..||++|.+...+..
T Consensus 373 ~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~ 451 (538)
T 3ozx_A 373 LNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDY 451 (538)
T ss_dssp TTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred cCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 221111 011233333333 3456777778888999999766 43332233222221 1236668888888666553
No 489
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=86.57 E-value=0.22 Score=43.61 Aligned_cols=25 Identities=16% Similarity=0.115 Sum_probs=10.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
...-|.|+|..|+|||||...+.++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEEECCCCC------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999888764
No 490
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=86.55 E-value=0.34 Score=50.93 Aligned_cols=76 Identities=12% Similarity=0.104 Sum_probs=42.3
Q ss_pred HHHHhhcCCCCCC-CccccCCHHHH-HHHHHHHhccCcEEEEEcCCCC--ChHH----HHHHhhhcCCCCCCcEEEEEec
Q 010117 239 DDIINPVMPPSRV-SVIIGEDYQLK-KSILQDYLTAKKYFIVLDDVFD--DSEI----WHDLVEFLPDNQNGSRVLITLL 310 (518)
Q Consensus 239 ~~i~~~l~~~~~~-~~~~~~~~~~~-~~~l~~~L~~kr~LlVLDdvw~--~~~~----~~~l~~~l~~~~~gskIivTTR 310 (518)
.++++.++..... ..+...+..+. .-.|...|..+.=+|+||.--+ |... ++.+.. +.. .|..||++|.
T Consensus 140 ~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~-l~~--~g~tvi~vsH 216 (538)
T 1yqt_A 140 EEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRR-LSE--EGKSVLVVEH 216 (538)
T ss_dssp HHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHH-HHH--TTCEEEEECS
T ss_pred HHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH-HHh--cCCEEEEEeC
Confidence 4566666654321 11223333333 3456777778888999999766 4432 233332 222 2667888888
Q ss_pred chhhhhh
Q 010117 311 WFELQKG 317 (518)
Q Consensus 311 ~~~va~~ 317 (518)
+...+..
T Consensus 217 d~~~~~~ 223 (538)
T 1yqt_A 217 DLAVLDY 223 (538)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 8665543
No 491
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=86.46 E-value=0.68 Score=45.41 Aligned_cols=24 Identities=13% Similarity=0.034 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHc
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
..+++.+.|-||+||||+|..+..
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~ 38 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAI 38 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEEeCCCCccHHHHHHHHHH
Confidence 457888899999999999988765
No 492
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=86.46 E-value=0.46 Score=47.38 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=21.2
Q ss_pred CCceEEEEEc-CCCccHHHHHHHHHc
Q 010117 188 PRLSVVAILD-SSGFEMTAFAADAFN 212 (518)
Q Consensus 188 ~~~~vi~I~G-~gGvGKTtLA~~v~~ 212 (518)
.+.++|+|+| -||+||||+|..+..
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~ 166 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAI 166 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCChHHHHHHHHHH
Confidence 4679999985 899999999987765
No 493
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=86.44 E-value=0.38 Score=45.29 Aligned_cols=40 Identities=10% Similarity=0.008 Sum_probs=26.4
Q ss_pred CceEEEEE-cCCCccHHHHHHHHHcCCCcccccceEEEEEcCCC
Q 010117 189 RLSVVAIL-DSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIA 231 (518)
Q Consensus 189 ~~~vi~I~-G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~ 231 (518)
..++|+|+ |-||+||||+|..+..--. + . ..++-|.....
T Consensus 26 ~~~vI~v~s~kGGvGKTT~a~~LA~~la-~-g-~~VlliD~D~~ 66 (267)
T 3k9g_A 26 KPKIITIASIKGGVGKSTSAIILATLLS-K-N-NKVLLIDMDTQ 66 (267)
T ss_dssp CCEEEEECCSSSSSCHHHHHHHHHHHHT-T-T-SCEEEEEECTT
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHH-C-C-CCEEEEECCCC
Confidence 46888885 5699999999988876322 2 2 23455555443
No 494
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=86.41 E-value=0.52 Score=44.76 Aligned_cols=24 Identities=8% Similarity=0.112 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
...|+++|.+|+|||||...+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 457999999999999999999875
No 495
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=86.40 E-value=4.4 Score=39.85 Aligned_cols=25 Identities=8% Similarity=0.179 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHcC
Q 010117 189 RLSVVAILDSSGFEMTAFAADAFNN 213 (518)
Q Consensus 189 ~~~vi~I~G~gGvGKTtLA~~v~~d 213 (518)
.++.|+|+|..|+|||||...+...
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4679999999999999999999874
No 496
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=86.39 E-value=0.26 Score=43.47 Aligned_cols=25 Identities=16% Similarity=-0.051 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHcCC
Q 010117 190 LSVVAILDSSGFEMTAFAADAFNNN 214 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~d~ 214 (518)
..-|.|+|..|+|||||...+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568899999999999999987653
No 497
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=86.39 E-value=0.33 Score=49.54 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHc
Q 010117 190 LSVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 190 ~~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+-|.++|++|+||||+|+.+..
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHHH
Confidence 34588999999999999999988
No 498
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=86.32 E-value=0.39 Score=43.52 Aligned_cols=43 Identities=7% Similarity=-0.089 Sum_probs=27.2
Q ss_pred EEEEE-cCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHH
Q 010117 192 VVAIL-DSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKI 237 (518)
Q Consensus 192 vi~I~-G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i 237 (518)
+|+|+ +-||+||||+|..+..- ....= .++-|......+....
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~--la~~g-~VlliD~D~q~~~~~~ 45 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAY--LALQG-ETLLIDGDPNRSATGW 45 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH--HHTTS-CEEEEEECTTCHHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHH--HHhcC-CEEEEECCCCCCHHHH
Confidence 56775 77999999999888763 22222 4556666555444333
No 499
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=86.31 E-value=0.37 Score=49.74 Aligned_cols=22 Identities=14% Similarity=0.095 Sum_probs=20.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 010117 191 SVVAILDSSGFEMTAFAADAFN 212 (518)
Q Consensus 191 ~vi~I~G~gGvGKTtLA~~v~~ 212 (518)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 7999999999999999998875
No 500
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=86.31 E-value=2.1 Score=39.43 Aligned_cols=105 Identities=13% Similarity=0.060 Sum_probs=52.8
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCcccccceEEEEEcCCCCCHHHHHHHHHhhcCCC-C-------C-CCccccCCHHHHH
Q 010117 193 VAILDSSGFEMTAFAADAFNNNHVKFYFDCHAWVRVSIAYDFGKILDDIINPVMPP-S-------R-VSVIIGEDYQLKK 263 (518)
Q Consensus 193 i~I~G~gGvGKTtLA~~v~~d~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~-~-------~-~~~~~~~~~~~~~ 263 (518)
+.|+|..|.|||.+|..+.... . ..+++++ ....-..+....+.+ ++.. . . .....-.+.+.+.
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~--~---~~~liv~-P~~~L~~q~~~~~~~-~~~~~v~~~~g~~~~~~~i~v~T~~~l~ 183 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL--S---TPTLIVV-PTLALAEQWKERLGI-FGEEYVGEFSGRIKELKPLTVSTYDSAY 183 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS--C---SCEEEEE-SSHHHHHHHHHHHGG-GCGGGEEEESSSCBCCCSEEEEEHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHc--C---CCEEEEe-CCHHHHHHHHHHHHh-CCCCeEEEEeCCCCCcCCEEEEeHHHHH
Confidence 7788999999999998877632 1 1234442 221112233333322 2211 0 0 0001112233333
Q ss_pred HHHHHHhccCcEEEEEcCCCC-ChHHHHHHhhhcCCCCCCcEEEEE
Q 010117 264 SILQDYLTAKKYFIVLDDVFD-DSEIWHDLVEFLPDNQNGSRVLIT 308 (518)
Q Consensus 264 ~~l~~~L~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivT 308 (518)
.... .+.++--+||+|.+.. ....+..+...++ ...++.+|
T Consensus 184 ~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LS 225 (237)
T 2fz4_A 184 VNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLT 225 (237)
T ss_dssp HTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEE
T ss_pred hhHH-HhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEe
Confidence 3333 3334455999999987 3455666666654 23445555
Done!