BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010120
(518 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NPP|B Chain B, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|E Chain E, Structure Of The Protein Phosphatase 2a Holoenzyme
Length = 449
Score = 432 bits (1112), Expect = e-121, Method: Compositional matrix adjust.
Identities = 217/447 (48%), Positives = 300/447 (67%), Gaps = 14/447 (3%)
Query: 58 SSAGKSNVATKRTSSAVFPASVVAGIEPLLPFKDVPNGEKMNLFVSKVSLCCVTFDF-TD 116
+ AG V S+ F V LL +DVP ++ LF+ K+ CCV FDF +D
Sbjct: 5 NKAGSRMVVDAANSNGPFQPVV------LLHIRDVPPADQEKLFIQKLRQCCVLFDFVSD 58
Query: 117 PTKNCVEKDVKKQTLIELLDFVAAGSMKFSEPAILAMCRMCAVNLFRVFPPNYRCSSHTT 176
P + K+VK+ L E+++++ +EP + M AVN+FR PP SS+ T
Sbjct: 59 PLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPP----SSNPT 114
Query: 177 G---ENDDDEPMFDPSWPHLQIVYDLLLKFITSSCLDAKVAKRYIDHSFILRLLDLFDSD 233
G + ++DEP + +WPHLQ+VY+ L+F+ S +AK+YID F+L+LL+LFDS+
Sbjct: 115 GAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSE 174
Query: 234 DPRERECLKTILHRVYGKFMVHRPFIRKSMSNIFYRFVFETEKHNGIAELLEILGSIISG 293
DPRER+ LKT LHR+YGKF+ R +IRK ++NIFYRF++ETE HNGIAELLEILGSII+G
Sbjct: 175 DPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIING 234
Query: 294 FALPLKEEHKIFLRRVIIPLHKPKSLGTYFQQLSYCVMQFIEKEPKLSSTVINGLLKYWP 353
FALPLKEEHKIFL +V++PLHK KSL Y QL+YCV+QF+EK+ L+ V+ LLKYWP
Sbjct: 235 FALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWP 294
Query: 354 ITNSQKEVMFLGEIEEILEAINMVEFQKVMVSLFWRIGCCINSFHFQVAERALFLWNNDQ 413
T+S KEVMFL E+EEIL+ I EF K+M LF ++ C++S HFQVAERAL+ WNN+
Sbjct: 295 KTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEY 354
Query: 414 IVNLIAHNRQVILPILLPVLEKNAQSHWNQAVLNLTLNVRKMFSEMDDVLFMSCHAQYRE 473
I++LI+ N ILPI+ P L +N+++HWN+ + L N K+F EM+ LF C Q++
Sbjct: 355 IMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKA 414
Query: 474 QVANLSLVDQRRKEAWEQLENAARLQP 500
+ L + R+EAW ++EN A+ P
Sbjct: 415 EKLKEKLKMKEREEAWVKIENLAKANP 441
>pdb|2IAE|B Chain B, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|E Chain E, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme
Length = 407
Score = 425 bits (1093), Expect = e-119, Method: Compositional matrix adjust.
Identities = 207/409 (50%), Positives = 287/409 (70%), Gaps = 8/409 (1%)
Query: 90 KDVPNGEKMNLFVSKVSLCCVTFDF-TDPTKNCVEKDVKKQTLIELLDFVAAGSMKFSEP 148
+DVP ++ LF+ K+ CCV FDF +DP + K+VK+ L E+++++ +EP
Sbjct: 2 RDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEP 61
Query: 149 AILAMCRMCAVNLFRVFPPNYRCSSHTTG---ENDDDEPMFDPSWPHLQIVYDLLLKFIT 205
+ M AVN+FR PP SS+ TG + ++DEP + +WPHLQ+VY+ L+F+
Sbjct: 62 IYPEVVHMFAVNMFRTLPP----SSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLE 117
Query: 206 SSCLDAKVAKRYIDHSFILRLLDLFDSDDPRERECLKTILHRVYGKFMVHRPFIRKSMSN 265
S +AK+YID F+L+LL+LFDS+DPRER+ LKT LHR+YGKF+ R +IRK ++N
Sbjct: 118 SPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 177
Query: 266 IFYRFVFETEKHNGIAELLEILGSIISGFALPLKEEHKIFLRRVIIPLHKPKSLGTYFQQ 325
IFYRF++ETE HNGIAELLEILGSII+GFALPLKEEHKIFL +V++PLHK KSL Y Q
Sbjct: 178 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQ 237
Query: 326 LSYCVMQFIEKEPKLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINMVEFQKVMVS 385
L+YCV+QF+EK+ L+ V+ LLKYWP T+S KEVMFL E+EEIL+ I EF K+M
Sbjct: 238 LAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEP 297
Query: 386 LFWRIGCCINSFHFQVAERALFLWNNDQIVNLIAHNRQVILPILLPVLEKNAQSHWNQAV 445
LF ++ C++S HFQVAERAL+ WNN+ I++LI+ N ILPI+ P L +N+++HWN+ +
Sbjct: 298 LFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTI 357
Query: 446 LNLTLNVRKMFSEMDDVLFMSCHAQYREQVANLSLVDQRRKEAWEQLEN 494
L N K+F EM+ LF C Q++ + L + R+EAW ++EN
Sbjct: 358 HGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIEN 406
>pdb|3FGA|B Chain B, Structural Basis Of Pp2a And Sgo Interaction
Length = 403
Score = 420 bits (1080), Expect = e-118, Method: Compositional matrix adjust.
Identities = 205/406 (50%), Positives = 284/406 (69%), Gaps = 8/406 (1%)
Query: 93 PNGEKMNLFVSKVSLCCVTFDF-TDPTKNCVEKDVKKQTLIELLDFVAAGSMKFSEPAIL 151
P ++ LF+ K+ CCV FDF +DP + K+VK+ L E+++++ +EP
Sbjct: 1 PPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYP 60
Query: 152 AMCRMCAVNLFRVFPPNYRCSSHTTG---ENDDDEPMFDPSWPHLQIVYDLLLKFITSSC 208
+ M AVN+FR PP SS+ TG + ++DEP + +WPHLQ+VY+ L+F+ S
Sbjct: 61 EVVHMFAVNMFRTLPP----SSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPD 116
Query: 209 LDAKVAKRYIDHSFILRLLDLFDSDDPRERECLKTILHRVYGKFMVHRPFIRKSMSNIFY 268
+AK+YID F+L+LL+LFDS+DPRER+ LKT LHR+YGKF+ R +IRK ++NIFY
Sbjct: 117 FQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFY 176
Query: 269 RFVFETEKHNGIAELLEILGSIISGFALPLKEEHKIFLRRVIIPLHKPKSLGTYFQQLSY 328
RF++ETE HNGIAELLEILGSII+GFALPLKEEHKIFL +V++PLHK KSL Y QL+Y
Sbjct: 177 RFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAY 236
Query: 329 CVMQFIEKEPKLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINMVEFQKVMVSLFW 388
CV+QF+EK+ L+ V+ LLKYWP T+S KEVMFL E+EEIL+ I EF K+M LF
Sbjct: 237 CVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFR 296
Query: 389 RIGCCINSFHFQVAERALFLWNNDQIVNLIAHNRQVILPILLPVLEKNAQSHWNQAVLNL 448
++ C++S HFQVAERAL+ WNN+ I++LI+ N ILPI+ P L +N+++HWN+ + L
Sbjct: 297 QLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGL 356
Query: 449 TLNVRKMFSEMDDVLFMSCHAQYREQVANLSLVDQRRKEAWEQLEN 494
N K+F EM+ LF C Q++ + L + R+EAW ++EN
Sbjct: 357 IYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIEN 402
>pdb|2NYL|B Chain B, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYL|E Chain E, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYM|B Chain B, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
pdb|2NYM|E Chain E, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
Length = 388
Score = 396 bits (1017), Expect = e-110, Method: Compositional matrix adjust.
Identities = 193/377 (51%), Positives = 261/377 (69%), Gaps = 8/377 (2%)
Query: 100 LFVSKVSLCCVTFDF-TDPTKNCVEKDVKKQTLIELLDFVAAGSMKFSEPAILAMCRMCA 158
LF+ K+ CCV FDF +DP + K+VK+ L E ++++ +EP + A
Sbjct: 4 LFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEXVEYITHNRNVITEPIYPEVVHXFA 63
Query: 159 VNLFRVFPPNYRCSSHTTG---ENDDDEPMFDPSWPHLQIVYDLLLKFITSSCLDAKVAK 215
VN FR PP SS+ TG + ++DEP + +WPHLQ+VY+ L+F+ S +AK
Sbjct: 64 VNXFRTLPP----SSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAK 119
Query: 216 RYIDHSFILRLLDLFDSDDPRERECLKTILHRVYGKFMVHRPFIRKSMSNIFYRFVFETE 275
+YID F+L+LL+LFDS+DPRER+ LKT LHR+YGKF+ R +IRK ++NIFYRF++ETE
Sbjct: 120 KYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETE 179
Query: 276 KHNGIAELLEILGSIISGFALPLKEEHKIFLRRVIIPLHKPKSLGTYFQQLSYCVMQFIE 335
HNGIAELLEILGSII+GFALPLKEEHKIFL +V++PLHK KSL Y QL+YCV+QF+E
Sbjct: 180 HHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLE 239
Query: 336 KEPKLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINMVEFQKVMVSLFWRIGCCIN 395
K+ L+ V+ LLKYWP T+S KEV FL E+EEIL+ I EF K+ LF ++ C++
Sbjct: 240 KDSTLTEPVVXALLKYWPKTHSPKEVXFLNELEEILDVIEPSEFVKIXEPLFRQLAKCVS 299
Query: 396 SFHFQVAERALFLWNNDQIVNLIAHNRQVILPILLPVLEKNAQSHWNQAVLNLTLNVRKM 455
S HFQVAERAL+ WNN+ I +LI+ N ILPI P L +N+++HWN+ + L N K+
Sbjct: 300 SPHFQVAERALYYWNNEYIXSLISDNAAKILPIXFPSLYRNSKTHWNKTIHGLIYNALKL 359
Query: 456 FSEMDDVLFMSCHAQYR 472
F E + LF C Q++
Sbjct: 360 FXEXNQKLFDDCTQQFK 376
>pdb|2JAK|A Chain A, Human Pp2a Regulatory Subunit B56g
Length = 392
Score = 390 bits (1001), Expect = e-108, Method: Compositional matrix adjust.
Identities = 189/358 (52%), Positives = 258/358 (72%), Gaps = 8/358 (2%)
Query: 86 LLPFKDVPNGEKMNLFVSKVSLCCVTFDF-TDPTKNCVEKDVKKQTLIELLDFVAAGSMK 144
LL +DVP ++ LF+ K+ CCV FDF +DP + K+VK+ L E+++++
Sbjct: 39 LLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNV 98
Query: 145 FSEPAILAMCRMCAVNLFRVFPPNYRCSSHTTG---ENDDDEPMFDPSWPHLQIVYDLLL 201
+EP + M AVN+FR PP SS+ TG + ++DEP + +WPHLQ+VY+ L
Sbjct: 99 ITEPIYPEVVHMFAVNMFRTLPP----SSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFL 154
Query: 202 KFITSSCLDAKVAKRYIDHSFILRLLDLFDSDDPRERECLKTILHRVYGKFMVHRPFIRK 261
+F+ S +AK+YID F+L+LL+LFDS+DPRER+ LKT LHR+YGKF+ R +IRK
Sbjct: 155 RFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK 214
Query: 262 SMSNIFYRFVFETEKHNGIAELLEILGSIISGFALPLKEEHKIFLRRVIIPLHKPKSLGT 321
++NIFYRF++ETE HNGIAELLEILGSII+GFALPLKEEHKIFL +V++PLHK KSL
Sbjct: 215 QINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSV 274
Query: 322 YFQQLSYCVMQFIEKEPKLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINMVEFQK 381
Y QL+YCV+QF+EK+ L+ V+ LLKYWP T+S KEVMFL E+EEIL+ I EF K
Sbjct: 275 YHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVK 334
Query: 382 VMVSLFWRIGCCINSFHFQVAERALFLWNNDQIVNLIAHNRQVILPILLPVLEKNAQS 439
+M LF ++ C++S HFQVAERAL+ WNN+ I++LI+ N ILPI+ P L +N+++
Sbjct: 335 IMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKT 392
>pdb|4B4T|S Chain S, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 523
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 406 LFLWNNDQIVNLIAHNRQVILPILL 430
LFLW++ ++ L+ NR+V++P LL
Sbjct: 144 LFLWDSKELEQLVEFNRKVVIPNLL 168
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,886,780
Number of Sequences: 62578
Number of extensions: 505162
Number of successful extensions: 1385
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1363
Number of HSP's gapped (non-prelim): 8
length of query: 518
length of database: 14,973,337
effective HSP length: 103
effective length of query: 415
effective length of database: 8,527,803
effective search space: 3539038245
effective search space used: 3539038245
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)