Query 010120
Match_columns 518
No_of_seqs 168 out of 305
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 21:17:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010120.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010120hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2085 Serine/threonine prote 100.0 1E-165 2E-170 1269.7 39.2 430 68-500 26-456 (457)
2 PF01603 B56: Protein phosphat 100.0 1E-131 3E-136 1043.3 28.7 407 85-497 1-409 (409)
3 PLN00122 serine/threonine prot 100.0 4.6E-39 9.9E-44 303.2 13.9 134 335-501 35-168 (170)
4 PLN00122 serine/threonine prot 97.5 0.00049 1.1E-08 66.0 9.0 36 70-105 32-67 (170)
5 PF01602 Adaptin_N: Adaptin N 89.5 9.4 0.0002 41.3 15.0 175 223-410 341-520 (526)
6 PF05918 API5: Apoptosis inhib 84.0 11 0.00024 42.7 11.9 125 285-409 196-340 (556)
7 PF14500 MMS19_N: Dos2-interac 81.6 19 0.00042 36.8 11.7 70 323-398 121-203 (262)
8 PF12348 CLASP_N: CLASP N term 78.0 38 0.00083 32.6 12.1 104 355-461 19-126 (228)
9 KOG1060 Vesicle coat complex A 77.5 30 0.00065 40.8 12.5 156 297-472 316-472 (968)
10 KOG0213 Splicing factor 3b, su 72.7 23 0.00049 41.7 10.0 289 154-468 569-904 (1172)
11 PF12460 MMS19_C: RNAPII trans 56.1 2.9E+02 0.0063 29.8 19.2 203 197-408 168-388 (415)
12 PF12783 Sec7_N: Guanine nucle 55.7 1.3E+02 0.0027 28.1 10.2 111 358-474 37-161 (168)
13 PF04388 Hamartin: Hamartin pr 55.7 2.8E+02 0.006 32.4 14.8 58 222-289 5-62 (668)
14 KOG2137 Protein kinase [Signal 54.9 1.2E+02 0.0027 35.4 11.6 161 282-457 292-457 (700)
15 PF01602 Adaptin_N: Adaptin N 54.0 3.2E+02 0.0069 29.6 17.7 241 194-461 246-486 (526)
16 PTZ00429 beta-adaptin; Provisi 53.5 3.5E+02 0.0077 32.1 15.3 182 223-461 34-233 (746)
17 PF01417 ENTH: ENTH domain; I 47.8 88 0.0019 28.0 7.5 91 367-458 24-121 (125)
18 PF08389 Xpo1: Exportin 1-like 45.6 1.5E+02 0.0032 26.0 8.7 104 340-456 8-113 (148)
19 smart00582 RPR domain present 45.1 33 0.00072 30.1 4.3 82 332-413 21-109 (121)
20 PF15611 EH_Signature: EH_Sign 44.5 4E+02 0.0087 28.0 16.0 94 375-495 185-280 (389)
21 cd07920 Pumilio Pumilio-family 42.3 3.8E+02 0.0083 27.1 14.4 69 338-408 142-211 (322)
22 KOG1991 Nuclear transport rece 42.1 3.3E+02 0.0072 33.3 12.7 149 191-350 343-509 (1010)
23 PF08767 CRM1_C: CRM1 C termin 40.6 4.6E+02 0.0099 27.5 16.8 170 259-462 43-229 (319)
24 PF12755 Vac14_Fab1_bd: Vacuol 39.8 1.6E+02 0.0035 25.7 7.7 73 379-457 21-96 (97)
25 COG5215 KAP95 Karyopherin (imp 38.9 1.1E+02 0.0023 35.5 7.8 104 384-497 262-388 (858)
26 cd03562 CID CID (CTD-Interacti 35.5 1.4E+02 0.0029 26.1 6.6 90 324-413 18-110 (114)
27 smart00544 MA3 Domain in DAP-5 34.7 2.5E+02 0.0053 24.2 8.1 76 218-293 33-109 (113)
28 PF07539 DRIM: Down-regulated 32.9 2E+02 0.0044 26.8 7.6 91 196-294 18-141 (141)
29 KOG0545 Aryl-hydrocarbon recep 31.9 4.5E+02 0.0097 27.8 10.3 96 378-490 224-324 (329)
30 KOG3926 F-box proteins [Amino 31.2 6.7E+02 0.014 26.7 12.0 100 395-496 167-277 (332)
31 cd03572 ENTH_epsin_related ENT 30.6 3.4E+02 0.0074 25.0 8.5 86 364-458 22-119 (122)
32 KOG0949 Predicted helicase, DE 30.4 2.6E+02 0.0055 34.6 9.3 106 387-497 804-915 (1330)
33 PF06757 Ins_allergen_rp: Inse 29.5 3E+02 0.0064 26.3 8.4 56 363-420 103-164 (179)
34 KOG1825 Fry-like conserved pro 29.3 1.1E+02 0.0025 39.8 6.6 156 221-411 218-383 (2206)
35 KOG2274 Predicted importin 9 [ 28.5 6E+02 0.013 31.0 11.8 149 300-498 85-237 (1005)
36 PF02847 MA3: MA3 domain; Int 27.5 3.4E+02 0.0073 23.2 7.7 79 219-297 34-113 (113)
37 PF10508 Proteasom_PSMB: Prote 27.2 6.8E+02 0.015 27.9 11.8 79 384-469 118-200 (503)
38 cd03571 ENTH_epsin ENTH domain 26.9 1.7E+02 0.0037 26.8 5.9 86 367-459 22-119 (123)
39 PF03378 CAS_CSE1: CAS/CSE pro 25.6 3E+02 0.0066 30.3 8.6 170 220-390 25-247 (435)
40 TIGR00777 ahpD alkylhydroperox 25.3 73 0.0016 31.2 3.4 17 260-276 76-92 (177)
41 cd03567 VHS_GGA VHS domain fam 24.5 5.8E+02 0.013 23.8 9.3 77 332-408 27-110 (139)
42 PF12348 CLASP_N: CLASP N term 24.3 6.3E+02 0.014 24.1 13.7 134 275-410 65-202 (228)
43 cd08324 CARD_NOD1_CARD4 Caspas 24.0 61 0.0013 28.2 2.3 39 221-259 46-84 (85)
44 COG5117 NOC3 Protein involved 23.0 5.2E+02 0.011 29.3 9.5 22 280-301 177-199 (657)
45 PF04499 SAPS: SIT4 phosphatas 22.8 3.9E+02 0.0083 30.0 8.8 99 195-293 34-149 (475)
46 PF08167 RIX1: rRNA processing 22.6 6.5E+02 0.014 23.7 9.4 95 222-333 68-163 (165)
47 PF09059 TyeA: TyeA; InterPro 22.4 1.3E+02 0.0028 26.2 4.0 48 334-381 15-62 (87)
48 smart00802 UME Domain in UVSB 22.2 1.3E+02 0.0027 27.0 4.0 59 283-344 12-74 (107)
49 PF03378 CAS_CSE1: CAS/CSE pro 21.0 1.8E+02 0.0039 32.1 5.7 104 188-312 195-301 (435)
No 1
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-165 Score=1269.69 Aligned_cols=430 Identities=58% Similarity=1.001 Sum_probs=420.5
Q ss_pred cccCCCcCCCc-cccccccCCCCCCCCchhhHHHHHHHHhhccccccccCCCCCchhhHHHHHHHHHHHHHHhcCCCCCC
Q 010120 68 KRTSSAVFPAS-VVAGIEPLLPFKDVPNGEKMNLFVSKVSLCCVTFDFTDPTKNCVEKDVKKQTLIELLDFVAAGSMKFS 146 (518)
Q Consensus 68 ~~~~~~~~~~~-~~~~~~~lP~l~dv~~~e~~~Lf~~Kl~~C~~ifDFsdp~~d~~~Ke~Kr~tL~EL~d~v~~~~~~lt 146 (518)
+++++|+|+.+ ...++++||+|+|||++||++||++|+++||++|||+||.+|.++||+||+||+||+||+.++++++|
T Consensus 26 ~~~~~s~~~~~~~~~~l~~LP~~~dv~~se~~~Lf~~Kl~~Cc~~FDF~Dp~~~~~~keikR~tL~eLvd~v~~~~~kit 105 (457)
T KOG2085|consen 26 RSQSSSQFRATSQNVELEPLPSLKDVPSSEQKELFIKKLEQCCVLFDFNDPLKDLKGKEIKRQTLLELVDDVISRRGKIS 105 (457)
T ss_pred CCCCCcccccccCCCCceeCCccCcCChhHhHHHHHHHHHhhheeeeccChhhhhccchhHHHHHHHHHHHHhhcccccc
Confidence 44566677654 67789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHhhccCChhHhhhhCCHHHHHHH
Q 010120 147 EPAILAMCRMCAVNLFRVFPPNYRCSSHTTGENDDDEPMFDPSWPHLQIVYDLLLKFITSSCLDAKVAKRYIDHSFILRL 226 (518)
Q Consensus 147 e~~~~~i~~Mvs~NiFR~lPp~~~~~~~~~~d~eedep~~e~sWpHLqlVYe~llrfv~s~~~d~~~ak~~Id~~Fv~~L 226 (518)
+.+|+++++|+++||||+|||..++++ +|+|||||++||+|||||+|||+||||++||+||+++||+||||+||++|
T Consensus 106 e~~~~~vv~m~s~nifR~lpp~~n~~~---~d~eedEp~le~awphLqlvye~~Lrf~~sp~~d~~vaK~yid~~FvlkL 182 (457)
T KOG2085|consen 106 EEVYSEVVKMFSVNIFRTLPPSVNPTG---FDYEEDEPVLEPAWPHLQLVYEFLLRFLESPDFDPSVAKKYIDQKFVLKL 182 (457)
T ss_pred HHHHHHHHHHHHHHhhccCCcccCCCc---CCccccCcccCCCchHHHHHHHHHHHHHhCcccCHHHHHHHhhHHHHHHH
Confidence 999999999999999999999998864 89999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCChHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHhhhhhccccccChHHHHHHHHHHHhcCCCCChHHHHHHH
Q 010120 227 LDLFDSDDPRERECLKTILHRVYGKFMVHRPFIRKSMSNIFYRFVFETEKHNGIAELLEILGSIISGFALPLKEEHKIFL 306 (518)
Q Consensus 227 l~lfdSeDpRERd~LKtiLHrIY~Kf~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFalPLKeEHk~Fl 306 (518)
|+|||||||||||+|||+|||||||||+||+|||++|||+||+||||||+|||||||||||||||||||+|||||||+||
T Consensus 183 LdLFdSEDpRERe~LKT~LhrIygKfl~~r~firk~iNNif~~FIyEte~hnGIaELLEIlgSiIngfAlPlKEEhkiFL 262 (457)
T KOG2085|consen 183 LDLFDSEDPREREFLKTILHRIYGKFLVHRPFIRKSINNIFLRFIYETERHNGIAELLEILGSIINGFALPLKEEHKLFL 262 (457)
T ss_pred HHHhcCCChHHHHHHHHHHHHHHHHHhhhHHHHHHhhcchhhhhcccccccCCHHHHHHHHHHhcCcccCcchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCchhhhhhhHHHHHHHHHHhCCCCHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhcChHHHHHHHHHH
Q 010120 307 RRVIIPLHKPKSLGTYFQQLSYCVMQFIEKEPKLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINMVEFQKVMVSL 386 (518)
Q Consensus 307 ~rvLiPLHk~k~~~~yh~qL~yCv~qfleKDp~L~~~vi~glLk~WP~tns~KEv~FL~EleeILe~~~~~ef~~i~~pL 386 (518)
.||||||||+|+++.||+||+|||+||+||||+|+++||+|||||||+|||+||||||||||||||+++|.+|++||+||
T Consensus 263 ~rvLipLhk~k~l~~yh~QLaYcivQfveKd~kl~~~VIrglLK~WP~tnS~KEVmFL~ElEEILe~iep~eFqk~~~PL 342 (457)
T KOG2085|consen 263 VRVLIPLHKPKSLSLYHKQLAYCIVQFVEKDPKLTETVIRGLLKYWPKTNSSKEVMFLNELEEILEVIEPSEFQKIMVPL 342 (457)
T ss_pred HHhhhccccCCCccccccccceeeeeeeccCccccHHHHHHHHHhcCCCCCcceeeeHhhHHHHHHhcCHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCchHHHHHHHHHhhcchhHHHHHHhccccccccchHHHHHHhhccchHHHHHHHHHHHHHHHhhCHHHHHH
Q 010120 387 FWRIGCCINSFHFQVAERALFLWNNDQIVNLIAHNRQVILPILLPVLEKNAQSHWNQAVLNLTLNVRKMFSEMDDVLFMS 466 (518)
Q Consensus 387 F~~ia~ci~S~hfqVAERAL~lwnNe~~~~li~~n~~~IlPii~p~L~~~~~~HWn~~V~~la~~vlkil~e~D~~lF~~ 466 (518)
|+|||+|++|+|||||||||++|||+||++||++|+.+|+|||||+||+++++|||++|+++++||+|+|||||++||++
T Consensus 343 f~qia~c~sS~HFQVAEraL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f~emd~~LFee 422 (457)
T KOG2085|consen 343 FRQIARCVSSPHFQVAERALYLWNNEYIRSLISQNAEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTFMEMDPKLFEE 422 (457)
T ss_pred HHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHHhccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCC
Q 010120 467 CHAQYREQVANLSLVDQRRKEAWEQLENAARLQP 500 (518)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~r~~~W~~le~~A~~~~ 500 (518)
|+++|++++.++++++++|+++|++||++|+..+
T Consensus 423 c~~~y~~~~~k~~~~~~~re~~W~~le~~~~~~~ 456 (457)
T KOG2085|consen 423 CLALYKEDRWKEKETEEKREETWKRLEELAAENP 456 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999996543
No 2
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=100.00 E-value=1.3e-131 Score=1043.30 Aligned_cols=407 Identities=57% Similarity=0.987 Sum_probs=360.8
Q ss_pred cCCCCCCCCchhhHHHHHHHHhhccccccccCCCCCchhhHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHhhhhcc
Q 010120 85 PLLPFKDVPNGEKMNLFVSKVSLCCVTFDFTDPTKNCVEKDVKKQTLIELLDFVAAGS--MKFSEPAILAMCRMCAVNLF 162 (518)
Q Consensus 85 ~lP~l~dv~~~e~~~Lf~~Kl~~C~~ifDFsdp~~d~~~Ke~Kr~tL~EL~d~v~~~~--~~lte~~~~~i~~Mvs~NiF 162 (518)
|||+|+||+++++++||++||++||++|||+||.+|.++||+||+||+||++|++++. +.++|++++++++||++|||
T Consensus 1 ~lP~l~dv~~~e~~~lf~~Kl~~C~~ifDF~d~~~d~~~Ke~K~~~L~el~~~v~~~~~~~~l~e~~~~~i~~Mi~~Nif 80 (409)
T PF01603_consen 1 PLPSLPDVPPPERQELFLKKLQQCCVIFDFSDPSSDLKEKEIKRQTLNELVDYVSNSRIQGILTEPVYPEIFNMISANIF 80 (409)
T ss_dssp ------SS-SSSCSCHTTHHHHHHHHHSTTSSSSSSHHHHHSHHHHHHHHHHHHCSSS--SSS-TTSHHHHHHHHHHHH-
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHhCCEeeCCCCccchHHHHHHHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHhcc
Confidence 6999999999999999999999999999999999999999999999999999999988 89999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHhhccCChhHhhhhCCHHHHHHHHhhcCCCChHHHHHHH
Q 010120 163 RVFPPNYRCSSHTTGENDDDEPMFDPSWPHLQIVYDLLLKFITSSCLDAKVAKRYIDHSFILRLLDLFDSDDPRERECLK 242 (518)
Q Consensus 163 R~lPp~~~~~~~~~~d~eedep~~e~sWpHLqlVYe~llrfv~s~~~d~~~ak~~Id~~Fv~~Ll~lfdSeDpRERd~LK 242 (518)
|++||.++.. +|+|||+|++||+|||||+||++|++||+++++++ +|+|||++||.+|+++|+|+||||||+||
T Consensus 81 R~lP~~~~~~----~~~~~d~~~~e~~WpHL~~vY~il~~~i~~~~~~~--~~~~i~~~fi~~Ll~l~~S~D~rER~~lk 154 (409)
T PF01603_consen 81 RPLPPIPNPS----FDPDDDEPFLEPSWPHLQLVYEILLRFIESPPFDP--AKKYIDQKFIKKLLELFDSPDPRERDYLK 154 (409)
T ss_dssp S-----SS------S-GGG------TTHHHHHHHHHHHHHHHTSTT--C--CTTTS-HHHHHHHHHTTTSSTHHHHHHHH
T ss_pred CCCCCccccc----CCccccccccccccHhHHHHHHHHHHHHHCccccH--HHHHcCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 9999998774 78999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHhhcccCchhHHHHHHHHHHhhhhhccccccChHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCCCCCchhhh
Q 010120 243 TILHRVYGKFMVHRPFIRKSMSNIFYRFVFETEKHNGIAELLEILGSIISGFALPLKEEHKIFLRRVIIPLHKPKSLGTY 322 (518)
Q Consensus 243 tiLHrIY~Kf~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFalPLKeEHk~Fl~rvLiPLHk~k~~~~y 322 (518)
++||||||||+++|+|||++|+++|++|+||+++|+||+|||||+|||||||++|||+||+.||.++|+|||++++++.|
T Consensus 155 ~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y 234 (409)
T PF01603_consen 155 TILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSY 234 (409)
T ss_dssp HHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGT
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhCCCCHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHhhCCchHHHH
Q 010120 323 FQQLSYCVMQFIEKEPKLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINMVEFQKVMVSLFWRIGCCINSFHFQVA 402 (518)
Q Consensus 323 h~qL~yCv~qfleKDp~L~~~vi~glLk~WP~tns~KEv~FL~EleeILe~~~~~ef~~i~~pLF~~ia~ci~S~hfqVA 402 (518)
|+||+||++||++|||+|+..+++||+||||+|||+|||+||+||++||+.+++++|++++.|||++||+|++|+|||||
T Consensus 235 ~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVA 314 (409)
T PF01603_consen 235 HQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVA 314 (409)
T ss_dssp HHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHH
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcchhHHHHHHhccccccccchHHHHHHhhccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhhHHHH
Q 010120 403 ERALFLWNNDQIVNLIAHNRQVILPILLPVLEKNAQSHWNQAVLNLTLNVRKMFSEMDDVLFMSCHAQYREQVANLSLVD 482 (518)
Q Consensus 403 ERAL~lwnNe~~~~li~~n~~~IlPii~p~L~~~~~~HWn~~V~~la~~vlkil~e~D~~lF~~~~~~~~~~~~~~~~~~ 482 (518)
||||++|+|++|++++.+|++.|+|+|+|+|++++++|||++||++|++|+++|+||||++|++|+++|++++.++++++
T Consensus 315 ErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~~~~~~~~~~~~~~~~~ 394 (409)
T PF01603_consen 315 ERALYFWNNEYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDKCAQKYKEKEQKEKARE 394 (409)
T ss_dssp HHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 010120 483 QRRKEAWEQLENAAR 497 (518)
Q Consensus 483 ~~r~~~W~~le~~A~ 497 (518)
++|+++|++|+++|+
T Consensus 395 ~~r~~~W~~i~~~A~ 409 (409)
T PF01603_consen 395 KKRKKKWKKIEEAAK 409 (409)
T ss_dssp HHHHHHHTT-S----
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999999984
No 3
>PLN00122 serine/threonine protein phosphatase 2A; Provisional
Probab=100.00 E-value=4.6e-39 Score=303.22 Aligned_cols=134 Identities=51% Similarity=0.834 Sum_probs=130.0
Q ss_pred HhCCCCHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHhhcchhH
Q 010120 335 EKEPKLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINMVEFQKVMVSLFWRIGCCINSFHFQVAERALFLWNNDQI 414 (518)
Q Consensus 335 eKDp~L~~~vi~glLk~WP~tns~KEv~FL~EleeILe~~~~~ef~~i~~pLF~~ia~ci~S~hfqVAERAL~lwnNe~~ 414 (518)
...+.++...+++|++|||++++.||.+||++| ||||||++||||+|
T Consensus 35 ~~~~~~~~~~~e~l~~~~~v~~s~k~~lfl~kl---------------------------------VAERAL~lWnNe~i 81 (170)
T PLN00122 35 AVNPASVVAGYEPLPSFRDVPNSEKQNLFVRKL---------------------------------VAERALFLWNNDHI 81 (170)
T ss_pred ccCCCccccccccccCCCCCCchHHHHHHHHHH---------------------------------HHHHHHHHHccHHH
Confidence 467889999999999999999999999999999 99999999999999
Q ss_pred HHHHHhccccccccchHHHHHHhhccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 010120 415 VNLIAHNRQVILPILLPVLEKNAQSHWNQAVLNLTLNVRKMFSEMDDVLFMSCHAQYREQVANLSLVDQRRKEAWEQLEN 494 (518)
Q Consensus 415 ~~li~~n~~~IlPii~p~L~~~~~~HWn~~V~~la~~vlkil~e~D~~lF~~~~~~~~~~~~~~~~~~~~r~~~W~~le~ 494 (518)
++||.+|+.+|||||||+||+++++|||++|++++++|+||||||||+||++|.++|+++++++++.+++|+++|++|++
T Consensus 82 ~~LI~~N~~~IlPIifpaL~~ns~~HWN~~V~~lt~nvlK~f~emD~~LF~ec~~~~ke~~~~~~~~~~~r~~~W~~le~ 161 (170)
T PLN00122 82 VNLIAQNRQVILPIIFPALEKNTRGHWNQAVHGLTLNVRKMFSEMDPELFEECLRKFEEDEAKAKEVEEKREATWKRLEE 161 (170)
T ss_pred HHHHHHhhhhhHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCC
Q 010120 495 AARLQPI 501 (518)
Q Consensus 495 ~A~~~~~ 501 (518)
.|++++.
T Consensus 162 ~A~~~~~ 168 (170)
T PLN00122 162 AAAAKAI 168 (170)
T ss_pred HHHhccC
Confidence 9977664
No 4
>PLN00122 serine/threonine protein phosphatase 2A; Provisional
Probab=97.50 E-value=0.00049 Score=65.97 Aligned_cols=36 Identities=72% Similarity=0.987 Sum_probs=31.4
Q ss_pred cCCCcCCCccccccccCCCCCCCCchhhHHHHHHHH
Q 010120 70 TSSAVFPASVVAGIEPLLPFKDVPNGEKMNLFVSKV 105 (518)
Q Consensus 70 ~~~~~~~~~~~~~~~~lP~l~dv~~~e~~~Lf~~Kl 105 (518)
..+..++......+++||+|+|+|.++|+.||++||
T Consensus 32 ~~~~~~~~~~~~~~e~l~~~~~v~~s~k~~lfl~kl 67 (170)
T PLN00122 32 ASSAVNPASVVAGYEPLPSFRDVPNSEKQNLFVRKL 67 (170)
T ss_pred cccccCCCccccccccccCCCCCCchHHHHHHHHHH
Confidence 444556667788999999999999999999999999
No 5
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=89.53 E-value=9.4 Score=41.30 Aligned_cols=175 Identities=13% Similarity=0.143 Sum_probs=117.4
Q ss_pred HHHHHhhc-CCCChHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHhhhhhccccccChHHHHHHHHHHHhcCCCCChHH
Q 010120 223 ILRLLDLF-DSDDPRERECLKTILHRVYGKFMVHRPFIRKSMSNIFYRFVFETEKHNGIAELLEILGSIISGFALPLKEE 301 (518)
Q Consensus 223 v~~Ll~lf-dSeDpRERd~LKtiLHrIY~Kf~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFalPLKeE 301 (518)
+..|+.-+ +..|+.=|..+-..+..+-.++..--.|.-..+-+++.. . ...-..|....+..++... ..+++.
T Consensus 341 l~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~----~-~~~~~~~~~~~i~~ll~~~-~~~~~~ 414 (526)
T PF01602_consen 341 LDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEI----S-GDYVSNEIINVIRDLLSNN-PELREK 414 (526)
T ss_dssp HHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHC----T-GGGCHCHHHHHHHHHHHHS-TTTHHH
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhh----c-cccccchHHHHHHHHhhcC-hhhhHH
Confidence 44455555 566777777766666777777777666666665555532 1 1222566777777777652 223333
Q ss_pred HHHHHHHHhhcCCCCCchhhhhhhHHHHHHHHHHhCCC--CHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhcChHHH
Q 010120 302 HKIFLRRVIIPLHKPKSLGTYFQQLSYCVMQFIEKEPK--LSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINMVEF 379 (518)
Q Consensus 302 Hk~Fl~rvLiPLHk~k~~~~yh~qL~yCv~qfleKDp~--L~~~vi~glLk~WP~tns~KEv~FL~EleeILe~~~~~ef 379 (518)
-...+.+.+ ..-.....-.-.++|+-+|.+..+. .+..+++.+...|...+..-+...|..+-.+....+.++-
T Consensus 415 ~l~~L~~~l----~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~ 490 (526)
T PF01602_consen 415 ILKKLIELL----EDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEV 490 (526)
T ss_dssp HHHHHHHHH----TSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTH
T ss_pred HHHHHHHHH----HHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhh
Confidence 322232222 2233344678889999999999888 8999999999999998888888899999999988776555
Q ss_pred HHHHHHHHHHHHHhhC--CchHHHHHHHHHhhc
Q 010120 380 QKVMVSLFWRIGCCIN--SFHFQVAERALFLWN 410 (518)
Q Consensus 380 ~~i~~pLF~~ia~ci~--S~hfqVAERAL~lwn 410 (518)
.+ .+...+.++.. |.++.|-+||.++|.
T Consensus 491 ~~---~i~~~~~~~~~~~s~~~evr~Ra~~y~~ 520 (526)
T PF01602_consen 491 QN---EILQFLLSLATEDSSDPEVRDRAREYLR 520 (526)
T ss_dssp HH---HHHHHHHCHHHHS-SSHHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 54 45555555666 999999999999885
No 6
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=83.96 E-value=11 Score=42.66 Aligned_cols=125 Identities=16% Similarity=0.231 Sum_probs=71.8
Q ss_pred HHHHHHHhcCCC---CChHHHHHHHHHHhh---cCCCC--CchhhhhhhHHHHHHH---HHHhCCCC---HHHHHHHhhc
Q 010120 285 EILGSIISGFAL---PLKEEHKIFLRRVII---PLHKP--KSLGTYFQQLSYCVMQ---FIEKEPKL---SSTVINGLLK 350 (518)
Q Consensus 285 eIlgSIInGFal---PLKeEHk~Fl~rvLi---PLHk~--k~~~~yh~qL~yCv~q---fleKDp~L---~~~vi~glLk 350 (518)
+++-+|.+.+.+ .=-.+..+.|..++. -|..+ .+-...-.++.+|+.+ |..+.... ...+.+.++-
T Consensus 196 ~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP 275 (556)
T PF05918_consen 196 ELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLP 275 (556)
T ss_dssp HHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCC
T ss_pred HHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcC
Confidence 334445555444 112445555555544 23322 1223556788999988 77776664 4455566665
Q ss_pred cCCCCCChhHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHhh------CCchHHHHHHHHHhh
Q 010120 351 YWPITNSQKEVMFLGEIEEILEAINMVEFQKVMVSLFWRIGCCI------NSFHFQVAERALFLW 409 (518)
Q Consensus 351 ~WP~tns~KEv~FL~EleeILe~~~~~ef~~i~~pLF~~ia~ci------~S~hfqVAERAL~lw 409 (518)
.|=......++-+|.-+.|+...+.+.+...++.++|..|-.++ .+.+|-..|..||.+
T Consensus 276 ~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~af 340 (556)
T PF05918_consen 276 KLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAF 340 (556)
T ss_dssp CTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTTS----------HHHHHHHHHHH
T ss_pred ChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHH
Confidence 55556668999999999999999998888999999999996554 345677788888754
No 7
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=81.61 E-value=19 Score=36.82 Aligned_cols=70 Identities=21% Similarity=0.377 Sum_probs=47.3
Q ss_pred hhhHHHHHHHHH--HhCCC---CHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhcChHHHHH--------HHHHHHHH
Q 010120 323 FQQLSYCVMQFI--EKEPK---LSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINMVEFQK--------VMVSLFWR 389 (518)
Q Consensus 323 h~qL~yCv~qfl--eKDp~---L~~~vi~glLk~WP~tns~KEv~FL~EleeILe~~~~~ef~~--------i~~pLF~~ 389 (518)
-..+.+.+++.+ ||||+ ++..+++-+++.||. --|..|+-+++..-=|-+|.. -...|=..
T Consensus 121 ~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~ 194 (262)
T PF14500_consen 121 GDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRA 194 (262)
T ss_pred hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHH
Confidence 456777777777 89998 677888999999994 234555556654432333331 23567788
Q ss_pred HHHhhCCch
Q 010120 390 IGCCINSFH 398 (518)
Q Consensus 390 ia~ci~S~h 398 (518)
+..|+.|.+
T Consensus 195 L~~cl~s~~ 203 (262)
T PF14500_consen 195 LRNCLSSTP 203 (262)
T ss_pred HHHHhcCcH
Confidence 889998755
No 8
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=78.03 E-value=38 Score=32.62 Aligned_cols=104 Identities=15% Similarity=0.151 Sum_probs=66.5
Q ss_pred CCChhHHHHHHHHHHHHhhc----ChHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHhhcchhHHHHHHhccccccccch
Q 010120 355 TNSQKEVMFLGEIEEILEAI----NMVEFQKVMVSLFWRIGCCINSFHFQVAERALFLWNNDQIVNLIAHNRQVILPILL 430 (518)
Q Consensus 355 tns~KEv~FL~EleeILe~~----~~~ef~~i~~pLF~~ia~ci~S~hfqVAERAL~lwnNe~~~~li~~n~~~IlPii~ 430 (518)
.+=.+.+-=|..|..++..- .+..|...+..+...|+.|+.+...+|+-.|+.++. .+...+...-...++.++
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~--~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLS--DLARQLGSHFEPYADILL 96 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHH--HHHHHHGGGGHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHH--HHHHHHhHhHHHHHHHHH
Confidence 44455666678888888665 234444555556669999999999999999998875 344445555555578888
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHhhCH
Q 010120 431 PVLEKNAQSHWNQAVLNLTLNVRKMFSEMDD 461 (518)
Q Consensus 431 p~L~~~~~~HWn~~V~~la~~vlkil~e~D~ 461 (518)
|.|.+..... ++.|+..|.+++..+.+.-+
T Consensus 97 ~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~ 126 (228)
T PF12348_consen 97 PPLLKKLGDS-KKFIREAANNALDAIIESCS 126 (228)
T ss_dssp HHHHHGGG----HHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHccc-cHHHHHHHHHHHHHHHHHCC
Confidence 9888765554 88999999999999988776
No 9
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.47 E-value=30 Score=40.84 Aligned_cols=156 Identities=18% Similarity=0.199 Sum_probs=109.8
Q ss_pred CChHHHHHHHHHHhhcCCCCCchhhhhhhHHHHHHHHHHhCCCCHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhc-C
Q 010120 297 PLKEEHKIFLRRVIIPLHKPKSLGTYFQQLSYCVMQFIEKEPKLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAI-N 375 (518)
Q Consensus 297 PLKeEHk~Fl~rvLiPLHk~k~~~~yh~qL~yCv~qfleKDp~L~~~vi~glLk~WP~tns~KEv~FL~EleeILe~~-~ 375 (518)
|.-+.|+. .+.|+-|-..+.-..| -+..||-++..|+|+|.++.++ +|+=.+.-+-++--|. | +||..+ +
T Consensus 316 P~~~~~~i--~kaLvrLLrs~~~vqy--vvL~nIa~~s~~~~~lF~P~lK---sFfv~ssDp~~vk~lK-l-eiLs~La~ 386 (968)
T KOG1060|consen 316 PKNQVTKI--AKALVRLLRSNREVQY--VVLQNIATISIKRPTLFEPHLK---SFFVRSSDPTQVKILK-L-EILSNLAN 386 (968)
T ss_pred CHHHHHHH--HHHHHHHHhcCCcchh--hhHHHHHHHHhcchhhhhhhhh---ceEeecCCHHHHHHHH-H-HHHHHHhh
Confidence 33355554 7888887776665554 4678899999999999999776 4556666666666554 2 233222 2
Q ss_pred hHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHhhcchhHHHHHHhccccccccchHHHHHHhhccchHHHHHHHHHHHHH
Q 010120 376 MVEFQKVMVSLFWRIGCCINSFHFQVAERALFLWNNDQIVNLIAHNRQVILPILLPVLEKNAQSHWNQAVLNLTLNVRKM 455 (518)
Q Consensus 376 ~~ef~~i~~pLF~~ia~ci~S~hfqVAERAL~lwnNe~~~~li~~n~~~IlPii~p~L~~~~~~HWn~~V~~la~~vlki 455 (518)
..... .+++-+-.-+.|+|++||-.|..- ++.-..+...+=+-.+..|..-.++| +.-|..-+..|+|+
T Consensus 387 esni~----~ILrE~q~YI~s~d~~faa~aV~A------iGrCA~~~~sv~~tCL~gLv~Llssh-de~Vv~eaV~vIk~ 455 (968)
T KOG1060|consen 387 ESNIS----EILRELQTYIKSSDRSFAAAAVKA------IGRCASRIGSVTDTCLNGLVQLLSSH-DELVVAEAVVVIKR 455 (968)
T ss_pred hccHH----HHHHHHHHHHhcCchhHHHHHHHH------HHHHHHhhCchhhHHHHHHHHHHhcc-cchhHHHHHHHHHH
Confidence 22333 366777778899999988877643 23334444555566778888888899 99999999999999
Q ss_pred HHhhCHHHHHHHHHHHH
Q 010120 456 FSEMDDVLFMSCHAQYR 472 (518)
Q Consensus 456 l~e~D~~lF~~~~~~~~ 472 (518)
|..+||.--.++..+..
T Consensus 456 Llq~~p~~h~~ii~~La 472 (968)
T KOG1060|consen 456 LLQKDPAEHLEILFQLA 472 (968)
T ss_pred HHhhChHHHHHHHHHHH
Confidence 99999988877776544
No 10
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=72.70 E-value=23 Score=41.71 Aligned_cols=289 Identities=17% Similarity=0.229 Sum_probs=168.8
Q ss_pred HHHhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCh----hHHHHHHHHHHHHh--hccCChhHhhhhCCHHHHHHHH
Q 010120 154 CRMCAVNLFRVFPPNYRCSSHTTGENDDDEPMFDPSWP----HLQIVYDLLLKFIT--SSCLDAKVAKRYIDHSFILRLL 227 (518)
Q Consensus 154 ~~Mvs~NiFR~lPp~~~~~~~~~~d~eedep~~e~sWp----HLqlVYe~llrfv~--s~~~d~~~ak~~Id~~Fv~~Ll 227 (518)
++|+.+|-.-.+--...++....|| .++.|-|. |-..+..-||+-+- -|..|+..|- |.+..-.+.|+
T Consensus 569 VR~itAlalsalaeaa~Pygie~fD-----sVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~-yyTrevmlil~ 642 (1172)
T KOG0213|consen 569 VRTITALALSALAEAATPYGIEQFD-----SVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYAS-YYTREVMLILI 642 (1172)
T ss_pred hhhHHHHHHHHHHHhcCCcchHHHH-----HHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHH-HhHHHHHHHHH
Confidence 4566666555554444444322333 57888885 66688888888765 4678888765 66777788899
Q ss_pred hhcCCCChHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHhhhhhccccccC-----------hHHHHHHHHH--HHhcC
Q 010120 228 DLFDSDDPRERECLKTILHRVYGKFMVHRPFIRKSMSNIFYRFVFETEKHNG-----------IAELLEILGS--IISGF 294 (518)
Q Consensus 228 ~lfdSeDpRERd~LKtiLHrIY~Kf~~~R~fIRk~Innif~~fiyEte~hnG-----------IaELLeIlgS--IInGF 294 (518)
.-|+|||..=...+-.++.++-++--.--.|||..|---|+...... +.-| .-|+-.=+|| ||+.-
T Consensus 643 rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~r-rmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~ 721 (1172)
T KOG0213|consen 643 REFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGR-RMALDRRNYKQLVDTTVEIAAKVGSDPIVSRV 721 (1172)
T ss_pred HhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhh-hhhccccchhhHHHHHHHHHHHhCchHHHHHH
Confidence 99999998888877778888888888888899988876665543222 1111 1122222232 45555
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCchhhhhhhHHHHHHHH------HHhCCCCHHHHHHHhhccCCCCCChhHHHHHHHHH
Q 010120 295 ALPLKEEHKIFLRRVIIPLHKPKSLGTYFQQLSYCVMQF------IEKEPKLSSTVINGLLKYWPITNSQKEVMFLGEIE 368 (518)
Q Consensus 295 alPLKeEHk~Fl~rvLiPLHk~k~~~~yh~qL~yCv~qf------leKDp~L~~~vi~glLk~WP~tns~KEv~FL~Ele 368 (518)
-.+||.|-.+|= .--+-.+... ..-|.+|-+..|+||+--.-...+.--|||++. .
T Consensus 722 v~~lkde~e~yr-----------------km~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gf-g 783 (1172)
T KOG0213|consen 722 VLDLKDEPEQYR-----------------KMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGF-G 783 (1172)
T ss_pred hhhhccccHHHH-----------------HHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhH-H
Confidence 556666554432 1111122222 245788999999999988776666555877762 2
Q ss_pred HHHhhcChHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHhhcchhH----------H----HHHHhc----cccccccch
Q 010120 369 EILEAINMVEFQKVMVSLFWRIGCCINSFHFQVAERALFLWNNDQI----------V----NLIAHN----RQVILPILL 430 (518)
Q Consensus 369 eILe~~~~~ef~~i~~pLF~~ia~ci~S~hfqVAERAL~lwnNe~~----------~----~li~~n----~~~IlPii~ 430 (518)
-+...+. ...++...+|+.-+-.-+++....|-.+|+.+...-.. + .++-+| -..++|.|+
T Consensus 784 ~V~~~lg-~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsIL 862 (1172)
T KOG0213|consen 784 TVVNALG-GRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSIL 862 (1172)
T ss_pred HHHHHHh-hccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHH
Confidence 2221111 11123334455555555678888888888775442211 0 011122 233445666
Q ss_pred HHHHHHhhcc----chHHHHHHHHHHHHHHHhhCHHHHHHHH
Q 010120 431 PVLEKNAQSH----WNQAVLNLTLNVRKMFSEMDDVLFMSCH 468 (518)
Q Consensus 431 p~L~~~~~~H----Wn~~V~~la~~vlkil~e~D~~lF~~~~ 468 (518)
.+|.....-| --+.++++.=...-||..--.++-+.|.
T Consensus 863 gAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~I 904 (1172)
T KOG0213|consen 863 GAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCI 904 (1172)
T ss_pred HHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHH
Confidence 6666555555 4445555555555555555555555554
No 11
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=56.14 E-value=2.9e+02 Score=29.79 Aligned_cols=203 Identities=15% Similarity=0.130 Sum_probs=126.1
Q ss_pred HHHHHHHHhhccCChhHhhhhCCHHHHHHHHhh-cCCCChHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHhhhhhccc
Q 010120 197 YDLLLKFITSSCLDAKVAKRYIDHSFILRLLDL-FDSDDPRERECLKTILHRVYGKFMVHRPFIRKSMSNIFYRFVFETE 275 (518)
Q Consensus 197 Ye~llrfv~s~~~d~~~ak~~Id~~Fv~~Ll~l-fdSeDpRERd~LKtiLHrIY~Kf~~~R~fIRk~Innif~~fiyEte 275 (518)
--++..++.+-+-+...- -...++.+++.+ ..++|+..|-..-..|--+-.|+.. -..+...+...+... ...+
T Consensus 168 ~~l~~~il~~l~~~~~~~---~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~-~~~l~~~l~~~~~~~-~~~~ 242 (415)
T PF12460_consen 168 VILFSAILCSLRKDVSLP---DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPD-DDDLDEFLDSLLQSI-SSSE 242 (415)
T ss_pred HHHHHHHHHcCCcccCcc---CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCC-hhhHHHHHHHHHhhh-cccC
Confidence 334555655443333321 112377888887 7788888888888888888888544 234555555444443 2223
Q ss_pred cccChHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCCCCCchhhhhhhHHHHHHHHHHhC-----------------C
Q 010120 276 KHNGIAELLEILGSIISGFALPLKEEHKIFLRRVIIPLHKPKSLGTYFQQLSYCVMQFIEKE-----------------P 338 (518)
Q Consensus 276 ~hnGIaELLeIlgSIInGFalPLKeEHk~Fl~rvLiPLHk~k~~~~yh~qL~yCv~qfleKD-----------------p 338 (518)
....-...++++.-|.+|-.+-.-..-..++.+ |+=|-..+.+ -...+.+..-++... .
T Consensus 243 ~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~-L~~lL~~~~~---g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQ 318 (415)
T PF12460_consen 243 DSELRPQALEILIWITKALVMRGHPLATELLDK-LLELLSSPEL---GQQAAKAFGILLSDSDDVLNKENHANVKLLYKQ 318 (415)
T ss_pred CcchhHHHHHHHHHHHHHHHHcCCchHHHHHHH-HHHHhCChhh---HHHHHHHHhhHhcCcHHhcCccccchhhhHHhH
Confidence 333344677888777777665554444444433 3333333322 233333333333221 2
Q ss_pred CCHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHh
Q 010120 339 KLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINMVEFQKVMVSLFWRIGCCINSFHFQVAERALFL 408 (518)
Q Consensus 339 ~L~~~vi~glLk~WP~tns~KEv~FL~EleeILe~~~~~ef~~i~~pLF~~ia~ci~S~hfqVAERAL~l 408 (518)
++...++..|+..+-.++.....-+|-=+..|+..++.+-...-+..|+..+-+|++.++-.|-..+|..
T Consensus 319 R~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~t 388 (415)
T PF12460_consen 319 RFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLET 388 (415)
T ss_pred HHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3456666667766666666566667888999999999998888899999999999999998887777763
No 12
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=55.73 E-value=1.3e+02 Score=28.14 Aligned_cols=111 Identities=17% Similarity=0.234 Sum_probs=75.6
Q ss_pred hhHHHHHHHHHHHHhhcCh-----H---HHH-HHHHHHHHHHHHhhCCchHHHHHHHHH----hhcchhHHHHHHhcccc
Q 010120 358 QKEVMFLGEIEEILEAINM-----V---EFQ-KVMVSLFWRIGCCINSFHFQVAERALF----LWNNDQIVNLIAHNRQV 424 (518)
Q Consensus 358 ~KEv~FL~EleeILe~~~~-----~---ef~-~i~~pLF~~ia~ci~S~hfqVAERAL~----lwnNe~~~~li~~n~~~ 424 (518)
.-.++=|.-|+.+|+.-.+ + .|. -+...++..|.+.+.+.+++|.++++. +| .++-..++.-.++
T Consensus 37 ~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~--~~~~~~Lk~ele~ 114 (168)
T PF12783_consen 37 RSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLL--SRFRSHLKLELEV 114 (168)
T ss_pred HHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 3445557777777765422 1 344 345889999999999999999999998 45 3455566666677
Q ss_pred ccccchHHHHHHhh-ccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 010120 425 ILPILLPVLEKNAQ-SHWNQAVLNLTLNVRKMFSEMDDVLFMSCHAQYREQ 474 (518)
Q Consensus 425 IlPii~p~L~~~~~-~HWn~~V~~la~~vlkil~e~D~~lF~~~~~~~~~~ 474 (518)
+++.++-.+..... .-| -|-++..+++-+-. ||.+.-+.-..|..+
T Consensus 115 ~l~~i~~~il~~~~~~~~---~k~~~Le~l~~l~~-~p~~l~~lf~NYDCd 161 (168)
T PF12783_consen 115 FLSHIILRILESDNSSLW---QKELALEILRELCK-DPQFLVDLFVNYDCD 161 (168)
T ss_pred HHHHHHHHHHccCCCcHH---HHHHHHHHHHHHHh-ChhHHHHHHHHcCCC
Confidence 77776665554333 346 56677777777775 788877777666543
No 13
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=55.70 E-value=2.8e+02 Score=32.40 Aligned_cols=58 Identities=26% Similarity=0.402 Sum_probs=41.5
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHhhhhhccccccChHHHHHHHHH
Q 010120 222 FILRLLDLFDSDDPRERECLKTILHRVYGKFMVHRPFIRKSMSNIFYRFVFETEKHNGIAELLEILGS 289 (518)
Q Consensus 222 Fv~~Ll~lfdSeDpRERd~LKtiLHrIY~Kf~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgS 289 (518)
-|.+|+.+++|.|..+.+.+|..+++..+. ..-+|+-..+- .|..+| |-.-.++||.+
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~----~y~~~t----~s~~~~~il~~ 62 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNS--DREPWLVNGLV----DYYLST----NSQRALEILVG 62 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhc--cchHHHHHHHH----HHHhhc----CcHHHHHHHHh
Confidence 367899999999999999999999998876 33345533333 333333 66667888753
No 14
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=54.89 E-value=1.2e+02 Score=35.45 Aligned_cols=161 Identities=15% Similarity=0.138 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCCCCCchhhhhhhHHHHHHHHHHhCCC-----CHHHHHHHhhccCCCCC
Q 010120 282 ELLEILGSIISGFALPLKEEHKIFLRRVIIPLHKPKSLGTYFQQLSYCVMQFIEKEPK-----LSSTVINGLLKYWPITN 356 (518)
Q Consensus 282 ELLeIlgSIInGFalPLKeEHk~Fl~rvLiPLHk~k~~~~yh~qL~yCv~qfleKDp~-----L~~~vi~glLk~WP~tn 356 (518)
+.|+-|.-+|-+|- ++..+.|+|-+|-.-=.-..+.+-..-||..|-+--+. ...+.|+-+.+. .-+
T Consensus 292 ~Flk~Ls~~ip~fp------~rv~~~kiLP~L~~el~n~~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~--~~~ 363 (700)
T KOG2137|consen 292 SFLKGLSKLIPTFP------ARVLFQKILPTLVAELVNTKMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSA--SDP 363 (700)
T ss_pred HHHHHHHHhhccCC------HHHHHHhhhhHHHHHhccccccccccchhhhhhhccchhhhhhhhhHHHHHHhcc--CCc
Confidence 44555555555543 55556666655544322223444444555444332222 345666666665 233
Q ss_pred ChhHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHhhcchhHHHHHHhccccccccchHHHHHH
Q 010120 357 SQKEVMFLGEIEEILEAINMVEFQKVMVSLFWRIGCCINSFHFQVAERALFLWNNDQIVNLIAHNRQVILPILLPVLEKN 436 (518)
Q Consensus 357 s~KEv~FL~EleeILe~~~~~ef~~i~~pLF~~ia~ci~S~hfqVAERAL~lwnNe~~~~li~~n~~~IlPii~p~L~~~ 436 (518)
-+=-++|+.-++-|++++++++|..-+.|+. -+|+++.--|+=|++|... +.+.+.|- -..+=-.|+|.|...
T Consensus 364 ~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL---~~S~~~~~~~iQ~~~L~~l--ptv~e~iD--~~~vk~~ilP~l~~l 436 (700)
T KOG2137|consen 364 KQALLFILENMDLLKEKTPPEEVKEKILPLL---YRSLEDSDVQIQELALQIL--PTVAESID--VPFVKQAILPRLKNL 436 (700)
T ss_pred ccchhhHHhhHHHHHhhCChHHHHHHHHHHH---HHHhcCcchhhHHHHHHhh--hHHHHhcc--HHHHHHHHHHHhhcc
Confidence 3344678888888999999999998777754 4599999999999999865 34444443 122223567788887
Q ss_pred hhccchHHHHHHHHHHHHHHH
Q 010120 437 AQSHWNQAVLNLTLNVRKMFS 457 (518)
Q Consensus 437 ~~~HWn~~V~~la~~vlkil~ 457 (518)
...|=+..|+.-+.-++..++
T Consensus 437 ~~~tt~~~vkvn~L~c~~~l~ 457 (700)
T KOG2137|consen 437 AFKTTNLYVKVNVLPCLAGLI 457 (700)
T ss_pred hhcccchHHHHHHHHHHHHHH
Confidence 888889999988888887776
No 15
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=53.98 E-value=3.2e+02 Score=29.58 Aligned_cols=241 Identities=18% Similarity=0.164 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHhhccCChhHhhhhCCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHhhhhhc
Q 010120 194 QIVYDLLLKFITSSCLDAKVAKRYIDHSFILRLLDLFDSDDPRERECLKTILHRVYGKFMVHRPFIRKSMSNIFYRFVFE 273 (518)
Q Consensus 194 qlVYe~llrfv~s~~~d~~~ak~~Id~~Fv~~Ll~lfdSeDpRERd~LKtiLHrIY~Kf~~~R~fIRk~Innif~~fiyE 273 (518)
.++|+...-++.-+..+. .-...+..|+.++.+.|+.=|-..-..|+.|-.+. .+.+...-..+| ++-.
T Consensus 246 ~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~---~~~v~~~~~~~~--~l~~ 314 (526)
T PF01602_consen 246 SVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN---PPAVFNQSLILF--FLLY 314 (526)
T ss_dssp HHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC---HHHHGTHHHHHH--HHHC
T ss_pred HHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc---chhhhhhhhhhh--eecC
Confidence 456665555554222111 22346777888899999987777666666665544 334431111111 1211
Q ss_pred cccccChHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCCCCCchhhhhhhHHHHHHHHHHhCCCCHHHHHHHhhccCC
Q 010120 274 TEKHNGIAELLEILGSIISGFALPLKEEHKIFLRRVIIPLHKPKSLGTYFQQLSYCVMQFIEKEPKLSSTVINGLLKYWP 353 (518)
Q Consensus 274 te~hnGIaELLeIlgSIInGFalPLKeEHk~Fl~rvLiPLHk~k~~~~yh~qL~yCv~qfleKDp~L~~~vi~glLk~WP 353 (518)
++...=-...|++|..+.+ ++-..-....|+.--+..+-..|...+...+...+++.+.-.++++..+++.=-
T Consensus 315 ~~d~~Ir~~~l~lL~~l~~-------~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~ 387 (526)
T PF01602_consen 315 DDDPSIRKKALDLLYKLAN-------ESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLE 387 (526)
T ss_dssp SSSHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHhhccc-------ccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhh
Confidence 1111112234777777665 222222333333332222233488899999999999999998888888887766
Q ss_pred CCCChhHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHhhcchhHHHHHHhccccccccchHHH
Q 010120 354 ITNSQKEVMFLGEIEEILEAINMVEFQKVMVSLFWRIGCCINSFHFQVAERALFLWNNDQIVNLIAHNRQVILPILLPVL 433 (518)
Q Consensus 354 ~tns~KEv~FL~EleeILe~~~~~ef~~i~~pLF~~ia~ci~S~hfqVAERAL~lwnNe~~~~li~~n~~~IlPii~p~L 433 (518)
.++..-.--.+..+-+++... |+....+...|++.+.. +.++ . + ++..+|-=-.+...+.. .. +.+-++..+
T Consensus 388 ~~~~~~~~~~~~~i~~ll~~~-~~~~~~~l~~L~~~l~~-~~~~--~-~-~~~~~wilGEy~~~~~~-~~-~~~~~~~~l 459 (526)
T PF01602_consen 388 ISGDYVSNEIINVIRDLLSNN-PELREKILKKLIELLED-ISSP--E-A-LAAAIWILGEYGELIEN-TE-SAPDILRSL 459 (526)
T ss_dssp CTGGGCHCHHHHHHHHHHHHS-TTTHHHHHHHHHHHHTS-SSSH--H-H-HHHHHHHHHHHCHHHTT-TT-HHHHHHHHH
T ss_pred hccccccchHHHHHHHHhhcC-hhhhHHHHHHHHHHHHH-hhHH--H-H-HHHHHhhhcccCCcccc-cc-cHHHHHHHH
Confidence 554444444566677777553 44455666666666655 2222 2 2 44455543334344433 11 333444444
Q ss_pred HHHhhccchHHHHHHHHHHHHHHHhhCH
Q 010120 434 EKNAQSHWNQAVLNLTLNVRKMFSEMDD 461 (518)
Q Consensus 434 ~~~~~~HWn~~V~~la~~vlkil~e~D~ 461 (518)
......- +..|+..+.+++-=+-..+|
T Consensus 460 ~~~~~~~-~~~vk~~ilt~~~Kl~~~~~ 486 (526)
T PF01602_consen 460 IENFIEE-SPEVKLQILTALAKLFKRNP 486 (526)
T ss_dssp HHHHTTS-HHHHHHHHHHHHHHHHHHSC
T ss_pred HHhhccc-cHHHHHHHHHHHHHHHhhCC
Confidence 4443221 45566655555443333343
No 16
>PTZ00429 beta-adaptin; Provisional
Probab=53.50 E-value=3.5e+02 Score=32.08 Aligned_cols=182 Identities=12% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHhhhhhccccccChHHHHHHHHHHHhcCCCCChHHH
Q 010120 223 ILRLLDLFDSDDPRERECLKTILHRVYGKFMVHRPFIRKSMSNIFYRFVFETEKHNGIAELLEILGSIISGFALPLKEEH 302 (518)
Q Consensus 223 v~~Ll~lfdSeDpRERd~LKtiLHrIY~Kf~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFalPLKeEH 302 (518)
+..|-..++|.|.++| |.. ++|.|..+- .| .+.-..+..+|+-++.+--+.-
T Consensus 34 ~~ELr~~L~s~~~~~k---k~a--------------lKkvIa~mt----------~G-~DvS~LF~dVvk~~~S~d~elK 85 (746)
T PTZ00429 34 GAELQNDLNGTDSYRK---KAA--------------VKRIIANMT----------MG-RDVSYLFVDVVKLAPSTDLELK 85 (746)
T ss_pred HHHHHHHHHCCCHHHH---HHH--------------HHHHHHHHH----------CC-CCchHHHHHHHHHhCCCCHHHH
Q ss_pred HHHHHHHhhcCCCCCchhhhhhhHHHHHHHHHHhCCCCHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhcChHHHHHH
Q 010120 303 KIFLRRVIIPLHKPKSLGTYFQQLSYCVMQFIEKEPKLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINMVEFQKV 382 (518)
Q Consensus 303 k~Fl~rvLiPLHk~k~~~~yh~qL~yCv~qfleKDp~L~~~vi~glLk~WP~tns~KEv~FL~EleeILe~~~~~ef~~i 382 (518)
|.-+.... .++.-+++++-.++..+.||-.=..+.|||+- |..+..-....+
T Consensus 86 KLvYLYL~-------~ya~~~pelalLaINtl~KDl~d~Np~IRaLA---------------------LRtLs~Ir~~~i 137 (746)
T PTZ00429 86 KLVYLYVL-------STARLQPEKALLAVNTFLQDTTNSSPVVRALA---------------------VRTMMCIRVSSV 137 (746)
T ss_pred HHHHHHHH-------HHcccChHHHHHHHHHHHHHcCCCCHHHHHHH---------------------HHHHHcCCcHHH
Q ss_pred HHHHHHHHHHhhCCchHHHHHHHHH----hhcc-----------hhHHHHHHhccccccccchHHHHHHhhcc---chHH
Q 010120 383 MVSLFWRIGCCINSFHFQVAERALF----LWNN-----------DQIVNLIAHNRQVILPILLPVLEKNAQSH---WNQA 444 (518)
Q Consensus 383 ~~pLF~~ia~ci~S~hfqVAERAL~----lwnN-----------e~~~~li~~n~~~IlPii~p~L~~~~~~H---Wn~~ 444 (518)
...+..-|.+|+...|--|-..|.. ++.. +.+..++.+....+.--.+-+|++..... | ..
T Consensus 138 ~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~l 216 (746)
T PTZ00429 138 LEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI-ES 216 (746)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh-HH
Q ss_pred HHHHHHHHHHHHHhhCH
Q 010120 445 VLNLTLNVRKMFSEMDD 461 (518)
Q Consensus 445 V~~la~~vlkil~e~D~ 461 (518)
.+....+.+..+.++|+
T Consensus 217 ~~~~~~~Ll~~L~e~~E 233 (746)
T PTZ00429 217 SNEWVNRLVYHLPECNE 233 (746)
T ss_pred HHHHHHHHHHHhhcCCh
No 17
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=47.77 E-value=88 Score=27.96 Aligned_cols=91 Identities=15% Similarity=0.194 Sum_probs=59.8
Q ss_pred HHHHHhhc-ChHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHhh------cchhHHHHHHhccccccccchHHHHHHhhc
Q 010120 367 IEEILEAI-NMVEFQKVMVSLFWRIGCCINSFHFQVAERALFLW------NNDQIVNLIAHNRQVILPILLPVLEKNAQS 439 (518)
Q Consensus 367 leeILe~~-~~~ef~~i~~pLF~~ia~ci~S~hfqVAERAL~lw------nNe~~~~li~~n~~~IlPii~p~L~~~~~~ 439 (518)
+.+|...+ +..++..|+.-|.+||.. ....+..+.=.||.+. -++.|+.-+.++...|-..---......-.
T Consensus 24 l~eIa~~t~~~~~~~~I~~~l~kRL~~-~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~~f~~~d~~g~ 102 (125)
T PF01417_consen 24 LAEIAQLTYNSKDCQEIMDVLWKRLSK-SDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQDFQYVDPKGK 102 (125)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHS-STSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG---BBTTST
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHh-cCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcceeeccCCCCc
Confidence 45666655 558999999888888854 3456667778888764 346666666666665544311111111234
Q ss_pred cchHHHHHHHHHHHHHHHh
Q 010120 440 HWNQAVLNLTLNVRKMFSE 458 (518)
Q Consensus 440 HWn~~V~~la~~vlkil~e 458 (518)
.|...||..|..++.+|.|
T Consensus 103 d~~~~VR~~A~~i~~lL~d 121 (125)
T PF01417_consen 103 DQGQNVREKAKEILELLND 121 (125)
T ss_dssp BHHHHHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHHHHHHHHhCC
Confidence 6889999999999999976
No 18
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=45.65 E-value=1.5e+02 Score=26.04 Aligned_cols=104 Identities=17% Similarity=0.310 Sum_probs=52.0
Q ss_pred CHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHhhCC-chHHH-HHHHHHhhcchhHHHH
Q 010120 340 LSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINMVEFQKVMVSLFWRIGCCINS-FHFQV-AERALFLWNNDQIVNL 417 (518)
Q Consensus 340 L~~~vi~glLk~WP~tns~KEv~FL~EleeILe~~~~~ef~~i~~pLF~~ia~ci~S-~hfqV-AERAL~lwnNe~~~~l 417 (518)
|+..+..-..+.||-.++. |+.++-..+.. ++....- ...+++.+..=+.+ .+..+ .+| ...+...
T Consensus 8 l~~~l~~i~~~~~P~~Wp~----~l~~l~~~~~~-~~~~~~~-~L~iL~~l~eEi~~~~~~~~~~~r------~~~l~~~ 75 (148)
T PF08389_consen 8 LAQVLAEIAKRDWPQQWPD----FLEDLLQLLQS-SPQHLEL-VLRILRILPEEITDFRRSSLSQER------RRELKDA 75 (148)
T ss_dssp HHHHHHHHHHHHTTTTSTT----HHHHHHHHHHT-THHHHHH-HHHHHHHHHHHHHTSHCCHSHHHH------HHHHHHH
T ss_pred HHHHHHHHHHHHChhhCch----HHHHHHHHhcc-chhHHHH-HHHHHHHHHHHHHhhhchhhhHHH------HHHHHHH
Confidence 4555667777888888876 66666666554 3333322 22344444433322 11111 122 3455566
Q ss_pred HHhccccccccchHHHHHHhhccchHHHHHHHHHHHHHH
Q 010120 418 IAHNRQVILPILLPVLEKNAQSHWNQAVLNLTLNVRKMF 456 (518)
Q Consensus 418 i~~n~~~IlPii~p~L~~~~~~HWn~~V~~la~~vlkil 456 (518)
+.++...|+.++...|......+ +..+...+..+++-+
T Consensus 76 l~~~~~~i~~~l~~~l~~~~~~~-~~~~~~~~L~~l~s~ 113 (148)
T PF08389_consen 76 LRSNSPDILEILSQILSQSSSEA-NEELVKAALKCLKSW 113 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccc-HHHHHHHHHHHHHHH
Confidence 66664444444444444443333 255666666655553
No 19
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=45.09 E-value=33 Score=30.11 Aligned_cols=82 Identities=12% Similarity=0.163 Sum_probs=54.0
Q ss_pred HHHHhCCCCHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhcCh-------HHHHHHHHHHHHHHHHhhCCchHHHHHH
Q 010120 332 QFIEKEPKLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINM-------VEFQKVMVSLFWRIGCCINSFHFQVAER 404 (518)
Q Consensus 332 qfleKDp~L~~~vi~glLk~WP~tns~KEv~FL~EleeILe~~~~-------~ef~~i~~pLF~~ia~ci~S~hfqVAER 404 (518)
+|+-.+..-+..++..+.++=..+.+.+.+-.|.-+.+|+-.... ..|.++....|..+.......+-+-..+
T Consensus 21 ~~~~~~~~~a~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ki~k 100 (121)
T smart00582 21 KWAIEHASHAKEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKRKYGSEFGDELGPVFQDALRDVLGAANDETKKKIRR 100 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 333334444555666666666667777888899999999865522 2444566666777766555556677788
Q ss_pred HHHhhcchh
Q 010120 405 ALFLWNNDQ 413 (518)
Q Consensus 405 AL~lwnNe~ 413 (518)
-+.+|..-.
T Consensus 101 ll~iW~~~~ 109 (121)
T smart00582 101 LLNIWEERG 109 (121)
T ss_pred HHHHHhcCC
Confidence 888998743
No 20
>PF15611 EH_Signature: EH_Signature domain
Probab=44.54 E-value=4e+02 Score=28.00 Aligned_cols=94 Identities=21% Similarity=0.341 Sum_probs=69.3
Q ss_pred ChHHHHHHHHHHHHHHHHhh-CC-chHHHHHHHHHhhcchhHHHHHHhccccccccchHHHHHHhhccchHHHHHHHHHH
Q 010120 375 NMVEFQKVMVSLFWRIGCCI-NS-FHFQVAERALFLWNNDQIVNLIAHNRQVILPILLPVLEKNAQSHWNQAVLNLTLNV 452 (518)
Q Consensus 375 ~~~ef~~i~~pLF~~ia~ci-~S-~hfqVAERAL~lwnNe~~~~li~~n~~~IlPii~p~L~~~~~~HWn~~V~~la~~v 452 (518)
.++....++.-+..+...|. .+ .|-++-+.++.+|.|+++ |. ....|...--....-+
T Consensus 185 ~~~~~~~~~~~lL~~~~~~~~~~~~~~~l~~~~l~~~GdPr~------------~~--------~~~~W~~v~e~a~~~v 244 (389)
T PF15611_consen 185 RPEQRKRALEALLERYIDRSPDEPVHEALRDLLLAIWGDPRL------------PS--------SQPNWSGVSEEARQMV 244 (389)
T ss_pred chhHHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHhCCCCC------------Cc--------cccchhhcCHHHHHHH
Confidence 45666677777888888765 33 788899999999999987 10 1112887555666677
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 010120 453 RKMFSEMDDVLFMSCHAQYREQVANLSLVDQRRKEAWEQLENA 495 (518)
Q Consensus 453 lkil~e~D~~lF~~~~~~~~~~~~~~~~~~~~r~~~W~~le~~ 495 (518)
+.-|..-|=+.|-+...++.. ....|+.-|.+..+.
T Consensus 245 ~~Wl~~~dL~~Ff~~l~~~~~-------~~~~R~~FW~~y~~~ 280 (389)
T PF15611_consen 245 RRWLSKEDLELFFDLLSQDGD-------MDPRRKNFWLRYLDQ 280 (389)
T ss_pred HHHHHHHHHHHHHHHHhhhcc-------cchHHHHHHHHHHHH
Confidence 888899998888887765543 566899999999887
No 21
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=42.32 E-value=3.8e+02 Score=27.13 Aligned_cols=69 Identities=12% Similarity=0.015 Sum_probs=38.3
Q ss_pred CCCHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHhhCCchH-HHHHHHHHh
Q 010120 338 PKLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINMVEFQKVMVSLFWRIGCCINSFHF-QVAERALFL 408 (518)
Q Consensus 338 p~L~~~vi~glLk~WP~tns~KEv~FL~EleeILe~~~~~ef~~i~~pLF~~ia~ci~S~hf-qVAERAL~l 408 (518)
|+-...+++.+..+|..-...|--. .-++.+++..++++...++..+...+...+..++- -|..++|..
T Consensus 142 ~~~~~~i~~~l~~~~~~l~~~~~G~--~vvq~~l~~~~~~~~~~l~~~l~~~~~~L~~d~~Gn~vvq~~l~~ 211 (322)
T cd07920 142 PEDLQFIIDAFKGNCVALSTHPYGC--RVIQRCLEHCSEEQREPLLEEILEHALELVQDQFGNYVVQHVLEL 211 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcccc--HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHhc
Confidence 4445555666665554433332111 12666777777777777777776666665555433 355555544
No 22
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.11 E-value=3.3e+02 Score=33.25 Aligned_cols=149 Identities=20% Similarity=0.234 Sum_probs=0.0
Q ss_pred hhHH-HHHHHHHHHHhhccCC--------hhHhhhhCCHHHHHHHHhhcCCCChHHHHHHHHHHHHH-hhcccCchhHHH
Q 010120 191 PHLQ-IVYDLLLKFITSSCLD--------AKVAKRYIDHSFILRLLDLFDSDDPRERECLKTILHRV-YGKFMVHRPFIR 260 (518)
Q Consensus 191 pHLq-lVYe~llrfv~s~~~d--------~~~ak~~Id~~Fv~~Ll~lfdSeDpRERd~LKtiLHrI-Y~Kf~~~R~fIR 260 (518)
|||| ++-++.+-.+--++-| .+..++++| +.+-+.|+|.-=-++|-+.-..= =.+|++ |-
T Consensus 343 PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~D------i~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k----~l 412 (1010)
T KOG1991|consen 343 PHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFD------IFEDGYSPDTAALDFLTTLVSKRGKETLPK----IL 412 (1010)
T ss_pred hHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCc------hhcccCCCcHHHHHHHHHHHHhcchhhhhh----HH
Q ss_pred HHHHHHHhhhhhc-cccccC--hHHHHHHHHHHHh--cCCCCChHHHHHHHHHHhhcCCCCCchhhhhhhHHHHHHHHH-
Q 010120 261 KSMSNIFYRFVFE-TEKHNG--IAELLEILGSIIS--GFALPLKEEHKIFLRRVIIPLHKPKSLGTYFQQLSYCVMQFI- 334 (518)
Q Consensus 261 k~Innif~~fiyE-te~hnG--IaELLeIlgSIIn--GFalPLKeEHk~Fl~rvLiPLHk~k~~~~yh~qL~yCv~qfl- 334 (518)
.-+.+||-+|.-. .+..|. ..-.|-++||+.. --.-|.|.++..|+...++|..+.+.... -.+-++.+-+|.
T Consensus 413 ~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~L-rarac~vl~~~~~ 491 (1010)
T KOG1991|consen 413 SFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYL-RARACWVLSQFSS 491 (1010)
T ss_pred HHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHH-HHHHHHHHHHHHh
Q ss_pred --HhCCCCHHHHHHHhhc
Q 010120 335 --EKEPKLSSTVINGLLK 350 (518)
Q Consensus 335 --eKDp~L~~~vi~glLk 350 (518)
=||+......+++-.+
T Consensus 492 ~df~d~~~l~~ale~t~~ 509 (1010)
T KOG1991|consen 492 IDFKDPNNLSEALELTHN 509 (1010)
T ss_pred ccCCChHHHHHHHHHHHH
No 23
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=40.61 E-value=4.6e+02 Score=27.53 Aligned_cols=170 Identities=18% Similarity=0.269 Sum_probs=93.2
Q ss_pred HHHHHHHHHhhhhhccc-----cccChHHHHH-HHHHHHhcCCCCC-hHHHHHHHHHHhh-cCCC--CCchhhhhhhHHH
Q 010120 259 IRKSMSNIFYRFVFETE-----KHNGIAELLE-ILGSIISGFALPL-KEEHKIFLRRVII-PLHK--PKSLGTYFQQLSY 328 (518)
Q Consensus 259 IRk~Innif~~fiyEte-----~hnGIaELLe-IlgSIInGFalPL-KeEHk~Fl~rvLi-PLHk--~k~~~~yh~qL~y 328 (518)
|+|.|-.++..||-..+ ..+-|.+|++ ||+-.-+ ..|- |+-...-+...|+ -|.. .+.+......+..
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~--~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~ 120 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQN--SVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFE 120 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHH--S-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhc--CCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 56666666666665555 3444566666 5555555 2333 3322222322221 1221 4667788899999
Q ss_pred HHHHHHHhCCCCHHHH-------HHHhhccCCCCCChhHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHhhCCchHHH
Q 010120 329 CVMQFIEKEPKLSSTV-------INGLLKYWPITNSQKEVMFLGEIEEILEAINMVEFQKVMVSLFWRIGCCINSFHFQV 401 (518)
Q Consensus 329 Cv~qfleKDp~L~~~v-------i~glLk~WP~tns~KEv~FL~EleeILe~~~~~ef~~i~~pLF~~ia~ci~S~hfqV 401 (518)
|....+.+|-.=.... ++.+.++=| +.+-.++++.|..++.- +.-++.+++..|
T Consensus 121 ~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f---------------~~l~~lp~~~f~~~ids----i~wg~kh~~~~I 181 (319)
T PF08767_consen 121 CTLPMINKDFEEYPEHRVNFFKLLRAINEHCF---------------PALLQLPPEQFKLVIDS----IVWGFKHTNREI 181 (319)
T ss_dssp HHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHT---------------HHHHHS-HHHHHHHHHH----HHHHHTSSSHHH
T ss_pred HHHHHHHhhhhhChHHHHHHHHHHHHHHHHhH---------------HHHHcCCHHHHHHHHHH----HHHHhCCCcHHH
Confidence 9999998875543222 222222211 12445788888886644 455778899999
Q ss_pred HHHHHHhhcchhHHHHHHhccccccccchHHHHHHhhccchHHHHHHHHHHHHHHHhhCHH
Q 010120 402 AERALFLWNNDQIVNLIAHNRQVILPILLPVLEKNAQSHWNQAVLNLTLNVRKMFSEMDDV 462 (518)
Q Consensus 402 AERAL~lwnNe~~~~li~~n~~~IlPii~p~L~~~~~~HWn~~V~~la~~vlkil~e~D~~ 462 (518)
++.+|.... .+++-+.. .=...+...+.+-...+-..++.++.|-+++
T Consensus 182 ~~~~L~~l~--~ll~~~~~-----------~~~~~~~~F~~~y~~~il~~if~vltD~~Hk 229 (319)
T PF08767_consen 182 SETGLNILL--ELLNNVSK-----------TNPEFANQFYQQYYLDILQDIFSVLTDSDHK 229 (319)
T ss_dssp HHHHHHHHH--HHHHHHHH------------SHHHHHHHHHHHHHHHHHHHHHHHHSTT-G
T ss_pred HHHHHHHHH--HHHHHHHh-----------cCHHHHHHHHHHHHHHHHHHHHHHHHCcccH
Confidence 999998653 22222222 1112234455555566666777777776643
No 24
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=39.83 E-value=1.6e+02 Score=25.65 Aligned_cols=73 Identities=14% Similarity=0.108 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHhhCCchHHHHHHHHHhhcchhHHHHHHhccccc---cccchHHHHHHhhccchHHHHHHHHHHHHH
Q 010120 379 FQKVMVSLFWRIGCCINSFHFQVAERALFLWNNDQIVNLIAHNRQVI---LPILLPVLEKNAQSHWNQAVLNLTLNVRKM 455 (518)
Q Consensus 379 f~~i~~pLF~~ia~ci~S~hfqVAERAL~lwnNe~~~~li~~n~~~I---lPii~p~L~~~~~~HWn~~V~~la~~vlki 455 (518)
..+....|.+-+-.|++.++..|-..|.. .+.++.+..+..+ |+-||.+|.+.... =++.|++.|.-.-+.
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcE-----aL~ni~k~~~~~~l~~f~~IF~~L~kl~~D-~d~~Vr~~a~~Ld~l 94 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACE-----ALYNISKVARGEILPYFNEIFDALCKLSAD-PDENVRSAAELLDRL 94 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CchhHHHHHHHHHHH
Confidence 44444455555557999999999888775 3334444434444 56688888876443 367788877666655
Q ss_pred HH
Q 010120 456 FS 457 (518)
Q Consensus 456 l~ 457 (518)
|.
T Consensus 95 lk 96 (97)
T PF12755_consen 95 LK 96 (97)
T ss_pred hc
Confidence 54
No 25
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=38.89 E-value=1.1e+02 Score=35.45 Aligned_cols=104 Identities=24% Similarity=0.371 Sum_probs=63.7
Q ss_pred HHHHHHHHHhhCCchHHHHHHHHHhhc---chhHH-HHHHhc---------------cccccccchHHHHHHh----hcc
Q 010120 384 VSLFWRIGCCINSFHFQVAERALFLWN---NDQIV-NLIAHN---------------RQVILPILLPVLEKNA----QSH 440 (518)
Q Consensus 384 ~pLF~~ia~ci~S~hfqVAERAL~lwn---Ne~~~-~li~~n---------------~~~IlPii~p~L~~~~----~~H 440 (518)
..||...++-+.|+|-+||-.|..+|. -|.+- ++..+. ...++|.+..-|.+-. ..-
T Consensus 262 ~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~Dd 341 (858)
T COG5215 262 NALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDD 341 (858)
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 458899999999999999999999993 22221 111111 2347788887777622 347
Q ss_pred chHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 010120 441 WNQAVLNLTLNVRKMFSEMDDVLFMSCHAQYREQVANLSLVDQRRKEAWEQLENAAR 497 (518)
Q Consensus 441 Wn~~V~~la~~vlkil~e~D~~lF~~~~~~~~~~~~~~~~~~~~r~~~W~~le~~A~ 497 (518)
||..+ .|...|++|.+.-.+.--+=.-.|-+ +--|.+.|...|..+.
T Consensus 342 Wn~sm--aA~sCLqlfaq~~gd~i~~pVl~FvE--------qni~~~~w~nreaavm 388 (858)
T COG5215 342 WNPSM--AASSCLQLFAQLKGDKIMRPVLGFVE--------QNIRSESWANREAAVM 388 (858)
T ss_pred cchhh--hHHHHHHHHHHHhhhHhHHHHHHHHH--------HhccCchhhhHHHHHH
Confidence 99755 45556666665443322222222222 2245678888887764
No 26
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=35.46 E-value=1.4e+02 Score=26.08 Aligned_cols=90 Identities=14% Similarity=0.175 Sum_probs=66.0
Q ss_pred hhHHHHHHHHHHhCCCCHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhcC---hHHHHHHHHHHHHHHHHhhCCchHH
Q 010120 324 QQLSYCVMQFIEKEPKLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAIN---MVEFQKVMVSLFWRIGCCINSFHFQ 400 (518)
Q Consensus 324 ~qL~yCv~qfleKDp~L~~~vi~glLk~WP~tns~KEv~FL~EleeILe~~~---~~ef~~i~~pLF~~ia~ci~S~hfq 400 (518)
++-..=+++++..+..-+..++..+.++=-.+.+.+.+-+|.-+.+|+-... ...|.....++|....+-....+-+
T Consensus 18 ~~~I~~lt~~a~~~~~~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~ 97 (114)
T cd03562 18 QPSIQTLTKLAIENRKHAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRK 97 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 3334446667777777788888888888888888999999999999997753 4567777788887766655556656
Q ss_pred HHHHHHHhhcchh
Q 010120 401 VAERALFLWNNDQ 413 (518)
Q Consensus 401 VAERAL~lwnNe~ 413 (518)
=..|-+.+|..-.
T Consensus 98 kl~rl~~iW~~~~ 110 (114)
T cd03562 98 KLERLLNIWEERF 110 (114)
T ss_pred HHHHHHHHccCCC
Confidence 6677777887543
No 27
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=34.75 E-value=2.5e+02 Score=24.18 Aligned_cols=76 Identities=18% Similarity=0.221 Sum_probs=51.7
Q ss_pred CCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHhhhh-hccccccChHHHHHHHHHHHhc
Q 010120 218 IDHSFILRLLDLFDSDDPRERECLKTILHRVYGKFMVHRPFIRKSMSNIFYRFV-FETEKHNGIAELLEILGSIISG 293 (518)
Q Consensus 218 Id~~Fv~~Ll~lfdSeDpRERd~LKtiLHrIY~Kf~~~R~fIRk~Innif~~fi-yEte~hnGIaELLeIlgSIInG 293 (518)
.-+.||..++..--.+...+|++.-.+|++++..-......+.+++.+++-..= .+.+-+....-+-.++|..|..
T Consensus 33 ~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~~~~~~~~~~f~~~~~~l~dl~~D~P~a~~~la~~~a~~v~~ 109 (113)
T smart00544 33 QHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANVISTKQFEKGFWRLLEDIEDLELDIPNAWRNLAEFVARLISD 109 (113)
T ss_pred chHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhhChhhhcccccHHHHHHHHHHHHHHc
Confidence 345677777777444578899999999999998777777788888887665531 1223445555566666665543
No 28
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=32.95 E-value=2e+02 Score=26.85 Aligned_cols=91 Identities=22% Similarity=0.333 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhccCC--------------------hhHhhhhCCHHHHHHHHhhcCCCC------hHHHHHHHHHHHHH-
Q 010120 196 VYDLLLKFITSSCLD--------------------AKVAKRYIDHSFILRLLDLFDSDD------PRERECLKTILHRV- 248 (518)
Q Consensus 196 VYe~llrfv~s~~~d--------------------~~~ak~~Id~~Fv~~Ll~lfdSeD------pRERd~LKtiLHrI- 248 (518)
+|+++++++.+++.+ ....++.+|.+-...=|..|...+ +..|+.|-.++.||
T Consensus 18 l~~~~~~LL~~~d~~vQklAL~cll~~k~~~l~pY~d~L~~Lldd~~frdeL~~f~~~~~~~~I~~ehR~~l~pvvlRIL 97 (141)
T PF07539_consen 18 LYDALLRLLSSRDPEVQKLALDCLLTWKDPYLTPYKDNLENLLDDKTFRDELTTFNLSDESSVIEEEHRPELMPVVLRIL 97 (141)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHhHHHHHHHHcCcchHHHHHHhhcccCCcCCCCHHHHhHHHHHHHHHH
Q ss_pred hhcccCchhHH------HHHHHHHHhhhhhccccccChHHHHHHHHHHHhcC
Q 010120 249 YGKFMVHRPFI------RKSMSNIFYRFVFETEKHNGIAELLEILGSIISGF 294 (518)
Q Consensus 249 Y~Kf~~~R~fI------Rk~Innif~~fiyEte~hnGIaELLeIlgSIInGF 294 (518)
|||....+.=- |.+|-..+-++ ...|+-.++.-.+.-|
T Consensus 98 ygk~~~~~~~~~~~~~rR~aIL~~L~~l--------~~~El~~Fl~l~~~p~ 141 (141)
T PF07539_consen 98 YGKMQSRKGSGSKKASRRAAILRFLAGL--------SEEELGLFLDLMLEPF 141 (141)
T ss_pred HHHHhhcCCCCCcchHHHHHHHHHHhCC--------CHHHHHHHHHHHhccC
No 29
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=31.86 E-value=4.5e+02 Score=27.75 Aligned_cols=96 Identities=15% Similarity=0.249 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHhhCCchHHHHHHHHHhhcchhHHHHHHhccccc--cccchHHHHHHhhcc---chHHHHHHHHHH
Q 010120 378 EFQKVMVSLFWRIGCCINSFHFQVAERALFLWNNDQIVNLIAHNRQVI--LPILLPVLEKNAQSH---WNQAVLNLTLNV 452 (518)
Q Consensus 378 ef~~i~~pLF~~ia~ci~S~hfqVAERAL~lwnNe~~~~li~~n~~~I--lPii~p~L~~~~~~H---Wn~~V~~la~~v 452 (518)
+..++..||+--+++|. -++ +.+..++...+.++ .|-...++++-++-| ||. .-|..=
T Consensus 224 eLdk~~tpLllNy~QC~-----L~~---------~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~---~eA~~D 286 (329)
T KOG0545|consen 224 ELDKMITPLLLNYCQCL-----LKK---------EEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNE---AEAKAD 286 (329)
T ss_pred HHHHhhhHHHHhHHHHH-----hhH---------HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCH---HHHHHH
Confidence 56788899999999997 233 23333333322222 477889999988877 995 456667
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 010120 453 RKMFSEMDDVLFMSCHAQYREQVANLSLVDQRRKEAWE 490 (518)
Q Consensus 453 lkil~e~D~~lF~~~~~~~~~~~~~~~~~~~~r~~~W~ 490 (518)
++-..++||.+=.-.....+.-+.+..++++.-+-+..
T Consensus 287 ~~~vL~ldpslasvVsrElr~le~r~~ek~~edr~~~~ 324 (329)
T KOG0545|consen 287 LQKVLELDPSLASVVSRELRLLENRMAEKQEEDRLRCR 324 (329)
T ss_pred HHHHHhcChhhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 77888999999888888777666655555544444433
No 30
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=31.17 E-value=6.7e+02 Score=26.66 Aligned_cols=100 Identities=16% Similarity=0.195 Sum_probs=63.2
Q ss_pred CCchHHHHHHHHHhhcchhHHHHHHhcc----ccc---cc--cchHHHHHHhhccchHHHHHHHHHHHHHHHhhCHHHHH
Q 010120 395 NSFHFQVAERALFLWNNDQIVNLIAHNR----QVI---LP--ILLPVLEKNAQSHWNQAVLNLTLNVRKMFSEMDDVLFM 465 (518)
Q Consensus 395 ~S~hfqVAERAL~lwnNe~~~~li~~n~----~~I---lP--ii~p~L~~~~~~HWn~~V~~la~~vlkil~e~D~~lF~ 465 (518)
.|.|.+-++|...+..-....+-|.-.. ... +| ++..-|++ ...||+-.--.-|-..|.+|.+ |..+..
T Consensus 167 vsn~~~w~~~m~til~~qqv~~~iqi~~~~~~~ltl~dLP~e~vl~Il~r-lsDh~dL~s~aqa~etl~~l~~-e~~iWk 244 (332)
T KOG3926|consen 167 VSNINLWKERMETILRWQQVLSQIQITEPDPAGLTLHDLPLECVLNILLR-LSDHRDLESLAQAWETLAKLSE-ERRIWK 244 (332)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCcccchHHHHHHHHHH-ccCcchHHHHHHhhHHHHHHHH-HHHHHH
Confidence 4568889999887655555555543211 111 34 23344444 5889998888888889999999 999999
Q ss_pred HHHHHH-HHHHH-hhHHHHHHHHHHHHHHHHHH
Q 010120 466 SCHAQY-REQVA-NLSLVDQRRKEAWEQLENAA 496 (518)
Q Consensus 466 ~~~~~~-~~~~~-~~~~~~~~r~~~W~~le~~A 496 (518)
++.+-+ .+.+- +.....++.+..|+++.=.-
T Consensus 245 kLcqfHF~erQi~~~l~l~k~~q~dWkqmyf~L 277 (332)
T KOG3926|consen 245 KLCQFHFNERQIHTILILSKKGQKDWKQMYFQL 277 (332)
T ss_pred HHHHHHhhHHHHHHhhhhccccchhHHHHHHHH
Confidence 877643 33322 22233344457799876443
No 31
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=30.57 E-value=3.4e+02 Score=24.96 Aligned_cols=86 Identities=16% Similarity=0.150 Sum_probs=56.9
Q ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHhh------cchhHHHHHHhccccccccchHHHHHH-
Q 010120 364 LGEIEEILEAINMVEFQKVMVSLFWRIGCCINSFHFQVAERALFLW------NNDQIVNLIAHNRQVILPILLPVLEKN- 436 (518)
Q Consensus 364 L~EleeILe~~~~~ef~~i~~pLF~~ia~ci~S~hfqVAERAL~lw------nNe~~~~li~~n~~~IlPii~p~L~~~- 436 (518)
++||.++.-. ++.+|..++.-|.+||.+ .|+|-+ -.||.+. -++.|..-+.+|...| -......
T Consensus 22 ~~Eia~~t~~-s~~~~~ei~d~L~kRL~~--~~~hVK--~K~Lrilk~l~~~G~~~f~~~~~~~~~~I----k~~~~f~g 92 (122)
T cd03572 22 YEEIAKLTRK-SVGSCQELLEYLLKRLKR--SSPHVK--LKVLKIIKHLCEKGNSDFKRELQRNSAQI----RECANYKG 92 (122)
T ss_pred HHHHHHHHHc-CHHHHHHHHHHHHHHhcC--CCCcch--HHHHHHHHHHHhhCCHHHHHHHHHhHHHH----HHHHHcCC
Confidence 4555555444 789999999999999997 778863 3444433 3577777777776433 1111111
Q ss_pred -----hhccchHHHHHHHHHHHHHHHh
Q 010120 437 -----AQSHWNQAVLNLTLNVRKMFSE 458 (518)
Q Consensus 437 -----~~~HWn~~V~~la~~vlkil~e 458 (518)
.-.-+++.||..|..+++++..
T Consensus 93 ~~Dp~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 93 PPDPLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred CCCcccCcchhHHHHHHHHHHHHHHhc
Confidence 1245789999999999888754
No 32
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=30.44 E-value=2.6e+02 Score=34.56 Aligned_cols=106 Identities=17% Similarity=0.129 Sum_probs=62.1
Q ss_pred HHHHHHhhCCchHHHHHHHHHhhcchhHHHHHHhccccccc-----cchHHHHHHhhccchHHHHHHHHHHHHHHHhhCH
Q 010120 387 FWRIGCCINSFHFQVAERALFLWNNDQIVNLIAHNRQVILP-----ILLPVLEKNAQSHWNQAVLNLTLNVRKMFSEMDD 461 (518)
Q Consensus 387 F~~ia~ci~S~hfqVAERAL~lwnNe~~~~li~~n~~~IlP-----ii~p~L~~~~~~HWn~~V~~la~~vlkil~e~D~ 461 (518)
+++.++.+.+.--.+.-.++.+ ++++-.+.|.+|.-..+| -++|++..|...|.. ..+|..|-+-|.+|+.
T Consensus 804 ~q~kik~~~ki~~k~Vnkqle~-~~~ys~e~i~~nil~ll~dLkEK~~lpaicfn~dr~fc---ekla~kv~~~Le~~e~ 879 (1330)
T KOG0949|consen 804 TQKQIKYVYKLQTKEVNKQLES-VVDYSSEYILENILDLLMDLKEKNMLPAICFNTDRDFC---EKLALKVHRQLESMEM 879 (1330)
T ss_pred HHHHHHHHHHhhhhhhhhHhhh-cccCcHHHHHHHHHHHHHHHHhccccchhcccchHHHH---HHHHHHHHHHHHHHHH
Confidence 3334444444444555667777 777777777777333332 235555555555554 5677777777777775
Q ss_pred H-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 010120 462 V-LFMSCHAQYREQVANLSLVDQRRKEAWEQLENAAR 497 (518)
Q Consensus 462 ~-lF~~~~~~~~~~~~~~~~~~~~r~~~W~~le~~A~ 497 (518)
+ --++|..+++ +++....+.+|-++.|.+=..+|.
T Consensus 880 Ee~k~k~m~k~k-k~~~~a~~r~Kt~e~~~k~~~~~e 915 (1330)
T KOG0949|consen 880 EEKKDKLMEKMK-KEAKRARDREKTKESWIKESIAAE 915 (1330)
T ss_pred hhHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhhh
Confidence 5 3345555444 344555556677788887666654
No 33
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=29.49 E-value=3e+02 Score=26.32 Aligned_cols=56 Identities=20% Similarity=0.304 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhcChHHHHHH------HHHHHHHHHHhhCCchHHHHHHHHHhhcchhHHHHHHh
Q 010120 363 FLGEIEEILEAINMVEFQKV------MVSLFWRIGCCINSFHFQVAERALFLWNNDQIVNLIAH 420 (518)
Q Consensus 363 FL~EleeILe~~~~~ef~~i------~~pLF~~ia~ci~S~hfqVAERAL~lwnNe~~~~li~~ 420 (518)
+=+-+.+++..+|-+++..+ ..+.|+.+-+.+.|+.||..-.+ +|+|+.+.+++..
T Consensus 103 ~~g~~~di~~~lP~~~l~aL~~~K~~~s~~F~~f~~~l~S~ef~~~~~~--~~~~~~~~~~~~~ 164 (179)
T PF06757_consen 103 LNGFVDDILALLPRDKLRALYEEKLATSPEFAEFVEALRSPEFQQLYNA--LWASPEFQRLLNE 164 (179)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHcCHHHHHHHHH--HHcCHHHHHHHHH
Confidence 44556666777777777655 35789999999999999866554 6899999887754
No 34
>KOG1825 consensus Fry-like conserved proteins [General function prediction only]
Probab=29.28 E-value=1.1e+02 Score=39.80 Aligned_cols=156 Identities=17% Similarity=0.155 Sum_probs=94.4
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHhh-cccCchhHHHHHHHHHHhhhhhccccccChHHHHHHHHHHHhcCCCCCh
Q 010120 221 SFILRLLDLFDSDDPRERECLKTILHRVYG-KFMVHRPFIRKSMSNIFYRFVFETEKHNGIAELLEILGSIISGFALPLK 299 (518)
Q Consensus 221 ~Fv~~Ll~lfdSeDpRERd~LKtiLHrIY~-Kf~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFalPLK 299 (518)
.|+.++=.+-.+ ++++-+ -.+.|+||| +|+.+ +.|-.+.++.-+.++..+++.+.--+--+|
T Consensus 218 ~f~ae~~~l~~~-~s~~~~--~s~vsLI~gMRyLrl--------------~~y~~~~~e~S~~F~~~l~~l~~~v~~~~k 280 (2206)
T KOG1825|consen 218 RFIAETERIDGK-ISPVAE--SSTVSLINGMRYLKL--------------GVYPLEDFEASASFMQSLSSLFLKVKDKVK 280 (2206)
T ss_pred HHHHHHHhcccc-CChHHH--HHHHHHHHhhhhhee--------------ccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 466665555545 665544 467888888 77663 255667777788889999998876555588
Q ss_pred HHHHHHHHHHhhcCCCCCchhhhhhhHHHHHHHHHHhCCCCHHHHHHHhhccCCCCCChhHH--HHHHHHHHHHhhcChH
Q 010120 300 EEHKIFLRRVIIPLHKPKSLGTYFQQLSYCVMQFIEKEPKLSSTVINGLLKYWPITNSQKEV--MFLGEIEEILEAINMV 377 (518)
Q Consensus 300 eEHk~Fl~rvLiPLHk~k~~~~yh~qL~yCv~qfleKDp~L~~~vi~glLk~WP~tns~KEv--~FL~EleeILe~~~~~ 377 (518)
.|..-.+...|+||-.+=.. --++|.+. .+++-+++-|+..++.|.. .+.-+.--++-..+..
T Consensus 281 ~~~a~~~~elL~pl~a~~~~--------------e~n~p~~~-~~~e~l~~tt~~l~~k~k~~l~~~p~~~s~lc~s~k~ 345 (2206)
T KOG1825|consen 281 HALAGLLVELLLPLAAAVTD--------------EVNIPAPP-SVMETLYTTTLELVSKKKYWLSQFPLKTSLLCVSPKS 345 (2206)
T ss_pred HHHHHHHHHHHHHHHHHhhc--------------cCCCcChH-HHHHHHHHhHHHHhhccccceeeccceeccccCCcHH
Confidence 99999999999999887333 33444443 2344455555544443332 2333333344444555
Q ss_pred HHHHHHHHHHHHHHHhh---CC--chHHHHHHHHH--hhcc
Q 010120 378 EFQKVMVSLFWRIGCCI---NS--FHFQVAERALF--LWNN 411 (518)
Q Consensus 378 ef~~i~~pLF~~ia~ci---~S--~hfqVAERAL~--lwnN 411 (518)
.|.+.-. .-|--|+ .+ .|-.||+|.|+ +|-+
T Consensus 346 ~f~~~w~---~~L~~~~~~~kn~~~~~r~al~~L~rl~wvy 383 (2206)
T KOG1825|consen 346 FFLSNWY---SFLVACLSNVKNDPWMRRVALRSLSRLVWVY 383 (2206)
T ss_pred HHHHHHH---HHHHHHHHhccCCHHHHHHHHHHhHHhheee
Confidence 5555322 2222233 22 67789999998 6654
No 35
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=28.48 E-value=6e+02 Score=31.04 Aligned_cols=149 Identities=12% Similarity=0.071 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhhcCCCCCchhhhhhhHHHHHHHHHHhCCCCHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhcChHHH
Q 010120 300 EEHKIFLRRVIIPLHKPKSLGTYFQQLSYCVMQFIEKEPKLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINMVEF 379 (518)
Q Consensus 300 eEHk~Fl~rvLiPLHk~k~~~~yh~qL~yCv~qfleKDp~L~~~vi~glLk~WP~tns~KEv~FL~EleeILe~~~~~ef 379 (518)
++-|.+....|+-+|- .+-..--...+|||.+...-| ||-.
T Consensus 85 e~~K~~IRe~Ll~~l~-~sn~ki~~~vay~is~Ia~~D--------------~Pd~------------------------ 125 (1005)
T KOG2274|consen 85 EEVKALIREQLLNLLD-DSNSKIRSAVAYAISSIAAVD--------------YPDE------------------------ 125 (1005)
T ss_pred HHHHHHHHHHHHhhhh-ccccccchHHHHHHHHHHhcc--------------Cchh------------------------
Confidence 4556666666666666 444455666677776554333 3432
Q ss_pred HHHHHHHHHHHHHhhCCchHHHHHHHHHhhcchhHHHHHHhccccccccchHHHHHHhhccchHHHHHHHHHHHHHHHhh
Q 010120 380 QKVMVSLFWRIGCCINSFHFQVAERALFLWNNDQIVNLIAHNRQVILPILLPVLEKNAQSHWNQAVLNLTLNVRKMFSEM 459 (518)
Q Consensus 380 ~~i~~pLF~~ia~ci~S~hfqVAERAL~lwnNe~~~~li~~n~~~IlPii~p~L~~~~~~HWn~~V~~la~~vlkil~e~ 459 (518)
-..||..|-+|++|.|.+-.-.||.+|+ +-.-.+..+--..+.|+.++.+++.-.--=..+.......+
T Consensus 126 ---WpElv~~i~~~l~~~n~n~i~~am~vL~-el~~ev~~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa------- 194 (1005)
T KOG2274|consen 126 ---WPELVPFILKLLSSGNENSIHGAMRVLA-ELSDEVDVEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAA------- 194 (1005)
T ss_pred ---hHHHHHHHHHHHhccchhhhhhHHHHHH-HHHHHHHHHHHhcccccchhhhhhhhhhccccchhHHHHhh-------
Confidence 2346777788888777777777888776 33333444445566688888888754322222222211111
Q ss_pred CHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHh
Q 010120 460 DDVLFMSCHAQYREQVAN----LSLVDQRRKEAWEQLENAARL 498 (518)
Q Consensus 460 D~~lF~~~~~~~~~~~~~----~~~~~~~r~~~W~~le~~A~~ 498 (518)
--++|.+|.......++. .+.--...-..|..+......
T Consensus 195 ~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h~l~ 237 (1005)
T KOG2274|consen 195 RGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEHPLQ 237 (1005)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 146677777654433322 222222334556666555533
No 36
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=27.51 E-value=3.4e+02 Score=23.21 Aligned_cols=79 Identities=14% Similarity=0.251 Sum_probs=48.7
Q ss_pred CHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHhhh-hhccccccChHHHHHHHHHHHhcCCCC
Q 010120 219 DHSFILRLLDLFDSDDPRERECLKTILHRVYGKFMVHRPFIRKSMSNIFYRF-VFETEKHNGIAELLEILGSIISGFALP 297 (518)
Q Consensus 219 d~~Fv~~Ll~lfdSeDpRERd~LKtiLHrIY~Kf~~~R~fIRk~Innif~~f-iyEte~hnGIaELLeIlgSIInGFalP 297 (518)
-+.||..++..--.+...+|++.-.++.+++.+=.....-+.+++..++... =.+.+.+.+..-+-++++..|..=++|
T Consensus 34 ~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf~~~l~~l~Dl~~D~P~~~~~la~~~~~~i~~~~lp 113 (113)
T PF02847_consen 34 HHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQFQEGFEDLLESLEDLELDIPKAPEYLAKFLARLIADGILP 113 (113)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTSS-
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhHhhhccccchHHHHHHHHHHHHHHHcCCcC
Confidence 3457777777655558999999999999999766666666677766555443 112234445555555555555443333
No 37
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=27.19 E-value=6.8e+02 Score=27.90 Aligned_cols=79 Identities=14% Similarity=0.066 Sum_probs=56.3
Q ss_pred HHHHHHHHHhhCCchHHHHHHHHHhhcchhHHHHHHhcc---ccccc-cchHHHHHHhhccchHHHHHHHHHHHHHHHhh
Q 010120 384 VSLFWRIGCCINSFHFQVAERALFLWNNDQIVNLIAHNR---QVILP-ILLPVLEKNAQSHWNQAVLNLTLNVRKMFSEM 459 (518)
Q Consensus 384 ~pLF~~ia~ci~S~hfqVAERAL~lwnNe~~~~li~~n~---~~IlP-ii~p~L~~~~~~HWn~~V~~la~~vlkil~e~ 459 (518)
..++..|..|+.++.-.||+.|..+..+ +..+. +.+++ -+.+.|.+...+ =|..+|--++.++-.+...
T Consensus 118 ~~l~~~i~~~L~~~d~~Va~~A~~~L~~------l~~~~~~~~~l~~~~~~~~L~~l~~~-~~~~vR~Rv~el~v~i~~~ 190 (503)
T PF10508_consen 118 NELLPLIIQCLRDPDLSVAKAAIKALKK------LASHPEGLEQLFDSNLLSKLKSLMSQ-SSDIVRCRVYELLVEIASH 190 (503)
T ss_pred ccHHHHHHHHHcCCcHHHHHHHHHHHHH------HhCCchhHHHHhCcchHHHHHHHHhc-cCHHHHHHHHHHHHHHHhc
Confidence 4588999999999999999999875432 21111 11222 125556655444 3778898899999899999
Q ss_pred CHHHHHHHHH
Q 010120 460 DDVLFMSCHA 469 (518)
Q Consensus 460 D~~lF~~~~~ 469 (518)
.+++++.|..
T Consensus 191 S~~~~~~~~~ 200 (503)
T PF10508_consen 191 SPEAAEAVVN 200 (503)
T ss_pred CHHHHHHHHh
Confidence 9999998875
No 38
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=26.88 E-value=1.7e+02 Score=26.78 Aligned_cols=86 Identities=22% Similarity=0.296 Sum_probs=55.3
Q ss_pred HHHHHhhc-ChHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHhhc------chhHHHHHHhccccccccchHHHH-----
Q 010120 367 IEEILEAI-NMVEFQKVMVSLFWRIGCCINSFHFQVAERALFLWN------NDQIVNLIAHNRQVILPILLPVLE----- 434 (518)
Q Consensus 367 leeILe~~-~~~ef~~i~~pLF~~ia~ci~S~hfqVAERAL~lwn------Ne~~~~li~~n~~~IlPii~p~L~----- 434 (518)
|.+|...+ +.++|..||.-|.+||... ..+-.+.=.||.+.. .++++.=+.+|...| ..|.
T Consensus 22 m~eIa~~t~~~~~~~~Im~~l~kRL~~~--~k~WR~vyKaL~lleyLl~nGse~vv~~~r~~~~~i-----~~L~~F~~~ 94 (123)
T cd03571 22 MAEIARATYNYVEFQEIMSMLWKRLNDK--GKNWRHVYKALTLLEYLLKNGSERVVDDARENLYII-----RTLKDFQYI 94 (123)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHH-----Hhhccceee
Confidence 45566554 6789999999999999876 456666777777542 233333333333222 2221
Q ss_pred HHhhccchHHHHHHHHHHHHHHHhh
Q 010120 435 KNAQSHWNQAVLNLTLNVRKMFSEM 459 (518)
Q Consensus 435 ~~~~~HWn~~V~~la~~vlkil~e~ 459 (518)
.....-|-..||..|.+++.++.|=
T Consensus 95 d~~g~d~G~~VR~ka~~i~~Ll~D~ 119 (123)
T cd03571 95 DENGKDQGINVREKAKEILELLEDD 119 (123)
T ss_pred CCCCCchhHHHHHHHHHHHHHhCCH
Confidence 1112269999999999999998763
No 39
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=25.60 E-value=3e+02 Score=30.34 Aligned_cols=170 Identities=15% Similarity=0.226 Sum_probs=83.0
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHhhc----ccCchhHHHHHHHH------------HHhhhhhcc---------
Q 010120 220 HSFILRLLDLFDSDDPRERECLKTILHRVYGK----FMVHRPFIRKSMSN------------IFYRFVFET--------- 274 (518)
Q Consensus 220 ~~Fv~~Ll~lfdSeDpRERd~LKtiLHrIY~K----f~~~R~fIRk~Inn------------if~~fiyEt--------- 274 (518)
+..+.+|+.+++.++..|=|||-..+.|+..- ....-.-+-..+.+ .|..|.||+
T Consensus 25 ~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~ 104 (435)
T PF03378_consen 25 QQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVC 104 (435)
T ss_dssp HHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhcc
Confidence 55777888888888888999888888888542 22222222222222 566666665
Q ss_pred ccccC-----hHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCCCCCchhhhh-------------------hhHHHHH
Q 010120 275 EKHNG-----IAELLEILGSIISGFALPLKEEHKIFLRRVIIPLHKPKSLGTYF-------------------QQLSYCV 330 (518)
Q Consensus 275 e~hnG-----IaELLeIlgSIInGFalPLKeEHk~Fl~rvLiPLHk~k~~~~yh-------------------~qL~yCv 330 (518)
+...+ -.-|+.++..|+.---...-+.=-+ +.-.|+=+|....++..+ +.|...+
T Consensus 105 ~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQ-Ila~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL 183 (435)
T PF03378_consen 105 EADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQ-ILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLL 183 (435)
T ss_dssp GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHH-HHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHH
Confidence 00000 1123444444444322211111111 234556666633343322 4566677
Q ss_pred HHHHHhCCCCHH--HHHHHhhccCCC--CCChhHHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 010120 331 MQFIEKEPKLSS--TVINGLLKYWPI--TNSQKEVMFLGEIEEILEAINMVEFQKVMVSLFWRI 390 (518)
Q Consensus 331 ~qfleKDp~L~~--~vi~glLk~WP~--tns~KEv~FL~EleeILe~~~~~ef~~i~~pLF~~i 390 (518)
..|++|+|.... .-+.++|...=+ ++..-+.--.+-|+.|++.++.+..++.+..+|..+
T Consensus 184 ~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~~gF~LL~~iv~~~p~~~l~~yl~~I~~ll 247 (435)
T PF03378_consen 184 QAYIKKDPSFIVANNQLEPILGVFQKLIASKANDHYGFDLLESIVENLPPEALEPYLKQIFTLL 247 (435)
T ss_dssp HHHHHHHGGG----S-CHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHS-HHHHGGGHHHHHHHH
T ss_pred HHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 888888888552 112222221111 223345555678999999999877655555444433
No 40
>TIGR00777 ahpD alkylhydroperoxidase, AhpD family. Members of this family are alkylhydroperoxidases, which catalyze the reduction of peroxides to their corresponding alcohols via oxidation of cysteine residues. In these alkylhydroperoxidases, the cysteines are located in a conserved -CXXC- motif located towards the COOH terminus. In Mycobacterium tuberculosis, two non-homologous alkylhydroperoxidases, AhpD and AhpC, are found in the same operon.
Probab=25.34 E-value=73 Score=31.19 Aligned_cols=17 Identities=35% Similarity=0.393 Sum_probs=12.7
Q ss_pred HHHHHHHHhhhhhcccc
Q 010120 260 RKSMSNIFYRFVFETEK 276 (518)
Q Consensus 260 Rk~Innif~~fiyEte~ 276 (518)
.=+|||+||||+.=...
T Consensus 76 ~MamnNv~Yr~~hl~~~ 92 (177)
T TIGR00777 76 IMAMNNVFYRGRHLLEG 92 (177)
T ss_pred HHhhhhHHHHhHhhccc
Confidence 45799999999865533
No 41
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=24.54 E-value=5.8e+02 Score=23.76 Aligned_cols=77 Identities=13% Similarity=0.077 Sum_probs=57.8
Q ss_pred HHHHhCCCCHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhcChHHHHHHH-HHHHHHHHHhhC------CchHHHHHH
Q 010120 332 QFIEKEPKLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINMVEFQKVM-VSLFWRIGCCIN------SFHFQVAER 404 (518)
Q Consensus 332 qfleKDp~L~~~vi~glLk~WP~tns~KEv~FL~EleeILe~~~~~ef~~i~-~pLF~~ia~ci~------S~hfqVAER 404 (518)
-.|..+|.-+...++.|.|-=-..|+.-++.-|.-++.++..+.+.--..+. ......+.+.++ ..|..|-+|
T Consensus 27 D~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~k 106 (139)
T cd03567 27 EQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTK 106 (139)
T ss_pred HHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHH
Confidence 3567889999999999998888888888888899999999988775545544 333345555553 268899999
Q ss_pred HHHh
Q 010120 405 ALFL 408 (518)
Q Consensus 405 AL~l 408 (518)
.|.+
T Consensus 107 il~l 110 (139)
T cd03567 107 IIEL 110 (139)
T ss_pred HHHH
Confidence 8874
No 42
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=24.30 E-value=6.3e+02 Score=24.14 Aligned_cols=134 Identities=12% Similarity=-0.026 Sum_probs=83.3
Q ss_pred ccccChHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCCCCCchhhhhhhHHHHHHHHHHhCCCCHHHHHHHhhccCCC
Q 010120 275 EKHNGIAELLEILGSIISGFALPLKEEHKIFLRRVIIPLHKPKSLGTYFQQLSYCVMQFIEKEPKLSSTVINGLLKYWPI 354 (518)
Q Consensus 275 e~hnGIaELLeIlgSIInGFalPLKeEHk~Fl~rvLiPLHk~k~~~~yh~qL~yCv~qfleKDp~L~~~vi~glLk~WP~ 354 (518)
.+..-..+.+.+++.+..+..-.+. .+-..+...|+-+..... ..+.+.-..|+..+++.-+-....++..+...+--
T Consensus 65 ~Rs~v~~~A~~~l~~l~~~l~~~~~-~~~~~~l~~Ll~~~~~~~-~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~ 142 (228)
T PF12348_consen 65 LRSKVSKTACQLLSDLARQLGSHFE-PYADILLPPLLKKLGDSK-KFIREAANNALDAIIESCSYSPKILLEILSQGLKS 142 (228)
T ss_dssp H---HHHHHHHHHHHHHHHHGGGGH-HHHHHHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHHHHHHHhHhHH-HHHHHHHHHHHHHHcccc-HHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhC
Confidence 3444467778888888888776653 345555667777766643 34678888899988887661223335666656655
Q ss_pred CCChhHHHHHHHHHHHHhhcC--hHHHHHH--HHHHHHHHHHhhCCchHHHHHHHHHhhc
Q 010120 355 TNSQKEVMFLGEIEEILEAIN--MVEFQKV--MVSLFWRIGCCINSFHFQVAERALFLWN 410 (518)
Q Consensus 355 tns~KEv~FL~EleeILe~~~--~~ef~~i--~~pLF~~ia~ci~S~hfqVAERAL~lwn 410 (518)
-|+.=-..-+.-+..+++..+ ...+..- ...+-+.|.+|++..+-.|=+.|-..|.
T Consensus 143 Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~ 202 (228)
T PF12348_consen 143 KNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLW 202 (228)
T ss_dssp S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 555555667778888888887 4555443 4778899999999999999888877553
No 43
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=24.05 E-value=61 Score=28.18 Aligned_cols=39 Identities=21% Similarity=0.415 Sum_probs=34.9
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchhHH
Q 010120 221 SFILRLLDLFDSDDPRERECLKTILHRVYGKFMVHRPFI 259 (518)
Q Consensus 221 ~Fv~~Ll~lfdSeDpRERd~LKtiLHrIY~Kf~~~R~fI 259 (518)
.=+.+|+++..|--....++...+|+-.|.-+..+|||.
T Consensus 46 dkmRkLld~v~akG~~~k~~F~~iL~e~~~~y~~~~~~~ 84 (85)
T cd08324 46 DKVRKILDLVQSKGEEVSEYFLYLLQQLADAYVDLRPWL 84 (85)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhhhhhccc
Confidence 345668889999999999999999999999999999985
No 44
>COG5117 NOC3 Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis / Intracellular trafficking and secretion]
Probab=23.03 E-value=5.2e+02 Score=29.31 Aligned_cols=22 Identities=45% Similarity=0.865 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHhcCCC-CChHH
Q 010120 280 IAELLEILGSIISGFAL-PLKEE 301 (518)
Q Consensus 280 IaELLeIlgSIInGFal-PLKeE 301 (518)
.-.||-++.+||-||-+ ||+||
T Consensus 177 ~LsLl~VFk~IIPgYkIRpL~e~ 199 (657)
T COG5117 177 YLSLLKVFKAIIPGYKIRPLKEE 199 (657)
T ss_pred HHHHHHHHHHhCccccccccchH
Confidence 34689999999999865 99995
No 45
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=22.78 E-value=3.9e+02 Score=29.96 Aligned_cols=99 Identities=17% Similarity=0.296 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhhcc--CChhHhhhhCCHHHHHHHHhhcCCC-ChHHHHHHHHHHHHHhh---cccC-------chhHHH-
Q 010120 195 IVYDLLLKFITSSC--LDAKVAKRYIDHSFILRLLDLFDSD-DPRERECLKTILHRVYG---KFMV-------HRPFIR- 260 (518)
Q Consensus 195 lVYe~llrfv~s~~--~d~~~ak~~Id~~Fv~~Ll~lfdSe-DpRERd~LKtiLHrIY~---Kf~~-------~R~fIR- 260 (518)
.+-|+|+|+|.... ....+..=.-++.+|.+|+++|+.+ |+......-.+|.-|.. .... -.+..|
T Consensus 34 ~ImDlLLklIs~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~ 113 (475)
T PF04499_consen 34 AIMDLLLKLISTDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQ 113 (475)
T ss_pred HHHHHHHHHHccCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHH
Confidence 67899999998553 3334444445789999999999844 44444445555444433 2221 122222
Q ss_pred ---HHHHHHHhhhhhccccccChHHHHHHHHHHHhc
Q 010120 261 ---KSMSNIFYRFVFETEKHNGIAELLEILGSIISG 293 (518)
Q Consensus 261 ---k~Innif~~fiyEte~hnGIaELLeIlgSIInG 293 (518)
..+-..+..++.+..+-.++.-.+-|+-.+|+-
T Consensus 114 L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRk 149 (475)
T PF04499_consen 114 LVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRK 149 (475)
T ss_pred HhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHh
Confidence 222233445555433344555555555555643
No 46
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=22.64 E-value=6.5e+02 Score=23.66 Aligned_cols=95 Identities=17% Similarity=0.329 Sum_probs=54.5
Q ss_pred HHHHHHhhcCCCChHH-HHHHHHHHHHHhhcccCchhHHHHHHHHHHhhhhhccccccChHHHHHHHHHHHhcCCCCChH
Q 010120 222 FILRLLDLFDSDDPRE-RECLKTILHRVYGKFMVHRPFIRKSMSNIFYRFVFETEKHNGIAELLEILGSIISGFALPLKE 300 (518)
Q Consensus 222 Fv~~Ll~lfdSeDpRE-Rd~LKtiLHrIY~Kf~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFalPLKe 300 (518)
++..|+..+.++||.- ++..-..|.+||..--+.=.+.|+....-+-.| |.-++.++.. +--.
T Consensus 68 W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~---------i~~ll~l~~~-------~~~~ 131 (165)
T PF08167_consen 68 WLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKF---------IQSLLQLLQD-------SSCP 131 (165)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHH---------HHHHHHHHhc-------cccH
Confidence 6666777777666654 677777888888766666667777666555554 2334443332 2223
Q ss_pred HHHHHHHHHhhcCCCCCchhhhhhhHHHHHHHH
Q 010120 301 EHKIFLRRVIIPLHKPKSLGTYFQQLSYCVMQF 333 (518)
Q Consensus 301 EHk~Fl~rvLiPLHk~k~~~~yh~qL~yCv~qf 333 (518)
+...-..+.||+.|-+ .+.-|..++-..+..+
T Consensus 132 ~~~l~~L~~ll~~~pt-t~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 132 ETALDALATLLPHHPT-TFRPFANKIESALLSL 163 (165)
T ss_pred HHHHHHHHHHHHHCCc-cccchHHHHHHHHHHH
Confidence 3334444666665544 4555555555544443
No 47
>PF09059 TyeA: TyeA; InterPro: IPR015144 This domain is composed of two pairs of parallel alpha-helices, and interacts with the bacterial protein YopN via hydrophobic residues located on the helices. Association of TyeA with the C terminus of YopN is accompanied by conformational changes in both polypeptides that create order out of disorder: the resulting structure then serves as an impediment to type III secretion of YopN []. ; PDB: 1XL3_D.
Probab=22.37 E-value=1.3e+02 Score=26.17 Aligned_cols=48 Identities=15% Similarity=0.365 Sum_probs=36.4
Q ss_pred HHhCCCCHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhcChHHHHH
Q 010120 334 IEKEPKLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINMVEFQK 381 (518)
Q Consensus 334 leKDp~L~~~vi~glLk~WP~tns~KEv~FL~EleeILe~~~~~ef~~ 381 (518)
+...+.+...-|.++..==+...+..+|.||.|+-+++-.++.+-|..
T Consensus 15 L~eq~Wi~~~~i~~l~~~~~~~d~e~qI~Flrel~~l~r~~Pv~vF~D 62 (87)
T PF09059_consen 15 LVEQRWIGPSQIERLAEALGLPDIEQQILFLRELKELFRLMPVDVFND 62 (87)
T ss_dssp HHHSTT--HHHHHHHHHCT--SSHHHHHHHHHHHHHHHHTS-GGGSS-
T ss_pred HhcCcCcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHCcHHhcCC
Confidence 456778888888888888889999999999999999999998776653
No 48
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=22.22 E-value=1.3e+02 Score=27.00 Aligned_cols=59 Identities=25% Similarity=0.408 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcCC--CCChHHHHHHHH--HHhhcCCCCCchhhhhhhHHHHHHHHHHhCCCCHHHH
Q 010120 283 LLEILGSIISGFA--LPLKEEHKIFLR--RVIIPLHKPKSLGTYFQQLSYCVMQFIEKEPKLSSTV 344 (518)
Q Consensus 283 LLeIlgSIInGFa--lPLKeEHk~Fl~--rvLiPLHk~k~~~~yh~qL~yCv~qfleKDp~L~~~v 344 (518)
++..+.++++... .|+ +|.+.-+. ..+|-+.+ ++++.+-+|++-|...=++++ .|-...
T Consensus 12 il~~f~~~l~d~~g~~~~-~ek~~~i~ai~~lI~~~g-~~i~~a~pQI~acL~saL~~~-eL~~~a 74 (107)
T smart00802 12 ILAVFSNILHDSSGKKPY-NEKKRALRSIGFLIKLMG-KHISSALPQIMACLQSALEIP-ELRSLA 74 (107)
T ss_pred HHHHHHHHHcCcccCCCH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCch-hHHHHH
Confidence 4445555566655 454 44444443 45666666 788899999999998888744 344433
No 49
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=21.03 E-value=1.8e+02 Score=32.09 Aligned_cols=104 Identities=18% Similarity=0.328 Sum_probs=63.5
Q ss_pred CCChhHHHHHHHHHHHHhhccCChhHhhhhCCHHHHHHHHhhcCCCChHH-HHHHHHHHHHHhhcccCchh--HHHHHHH
Q 010120 188 PSWPHLQIVYDLLLKFITSSCLDAKVAKRYIDHSFILRLLDLFDSDDPRE-RECLKTILHRVYGKFMVHRP--FIRKSMS 264 (518)
Q Consensus 188 ~sWpHLqlVYe~llrfv~s~~~d~~~ak~~Id~~Fv~~Ll~lfdSeDpRE-Rd~LKtiLHrIY~Kf~~~R~--fIRk~In 264 (518)
.+-.||+-|+.+|-+.|.|...|..-. ..+..++..+ +++- ..|+++|+.-++.+....|. |+|+-+.
T Consensus 195 ~~~~~l~~iLgvFQkLi~sk~~D~~gF------~LL~~iv~~~---p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~ 265 (435)
T PF03378_consen 195 VANNQLEPILGVFQKLIASKANDHYGF------DLLESIVENL---PPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVV 265 (435)
T ss_dssp ---S-CHHHHHHHHHHHT-TTCHHHHH------HHHHHHHHHS----HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHCCCCcchHHH------HHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHH
Confidence 556999999999999999887665422 1344455544 3322 45888888888887765554 6666663
Q ss_pred HHHhhhhhccccccChHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhc
Q 010120 265 NIFYRFVFETEKHNGIAELLEILGSIISGFALPLKEEHKIFLRRVIIP 312 (518)
Q Consensus 265 nif~~fiyEte~hnGIaELLeIlgSIInGFalPLKeEHk~Fl~rvLiP 312 (518)
|+.++-- ..|...+.+++.+|-.|.- ..++.++++|
T Consensus 266 --F~~~~~~---~~g~~~li~~id~IQ~glF-------~~il~~v~lp 301 (435)
T PF03378_consen 266 --FLSLFAI---KYGPDFLIQTIDSIQPGLF-------GMILEKVWLP 301 (435)
T ss_dssp --HHHHHHH---HH-HHHHHHHHHTTSTTHH-------HHHHHHTHHH
T ss_pred --HHHHHHH---HcCHHHHHHHHHHhcCCcH-------HHHHHHHhcC
Confidence 3333211 1299999999999988832 3456677777
Done!