Query 010120
Match_columns 518
No_of_seqs 168 out of 305
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 20:20:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010120.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010120hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2npp_B PP2A, B subunit, serine 100.0 3E-148 9E-153 1176.9 28.2 437 58-501 5-442 (449)
2 3fga_B Serine/threonine-protei 100.0 1E-145 3E-150 1142.7 35.3 401 93-494 1-402 (403)
3 2jak_A Serine/threonine-protei 100.0 9E-132 3E-136 1034.2 34.9 368 65-439 24-392 (392)
4 1qgr_A Protein (importin beta 94.5 5 0.00017 43.7 22.8 230 222-458 218-479 (876)
5 1ibr_B P95, importin beta-1 su 94.5 0.58 2E-05 46.7 14.3 222 223-462 3-250 (462)
6 2bpt_A Importin beta-1 subunit 94.3 7.4 0.00025 42.2 23.6 263 191-458 175-482 (861)
7 4fdd_A Transportin-1; heat rep 93.6 1.1 3.8E-05 49.6 15.6 226 223-465 15-251 (852)
8 2qk2_A LP04448P; mini spindles 92.9 2.3 7.9E-05 39.6 14.6 176 226-408 20-199 (242)
9 2qk1_A Protein STU2; STU2P, XM 92.9 3 0.0001 40.0 15.7 180 228-409 23-215 (249)
10 2bpt_A Importin beta-1 subunit 92.6 1.9 6.5E-05 46.9 15.4 226 222-455 412-665 (861)
11 4fdd_A Transportin-1; heat rep 90.8 16 0.00055 40.3 20.5 279 216-501 479-788 (852)
12 1qgr_A Protein (importin beta 90.1 24 0.00081 38.3 21.1 91 364-456 585-677 (876)
13 2x19_B Importin-13; nuclear tr 87.7 22 0.00075 39.7 18.9 203 224-469 689-905 (963)
14 2jdq_A Importin alpha-1 subuni 85.4 30 0.001 34.1 17.2 235 214-462 100-352 (450)
15 1u6g_C TIP120 protein, CAND1; 82.4 21 0.00071 41.2 15.9 100 358-459 492-599 (1230)
16 2km4_A Regulator of TY1 transp 78.2 5.9 0.0002 35.3 7.5 84 331-414 26-118 (142)
17 1wa5_B Importin alpha subunit; 74.9 38 0.0013 35.0 13.7 230 214-458 166-412 (530)
18 2vgl_B AP-2 complex subunit be 74.7 34 0.0012 36.5 13.6 175 221-410 353-528 (591)
19 4b8j_A Importin subunit alpha- 72.5 51 0.0017 33.9 13.9 235 211-459 150-401 (528)
20 1ibr_B P95, importin beta-1 su 72.5 76 0.0026 31.1 16.1 240 191-435 168-458 (462)
21 2of3_A ZYG-9; multifunctional 70.8 29 0.00098 34.3 11.0 105 364-472 67-177 (266)
22 1u6g_C TIP120 protein, CAND1; 68.9 1.7E+02 0.0058 33.6 22.0 52 215-267 429-481 (1230)
23 1wa5_C Importin alpha RE-expor 67.0 46 0.0016 37.5 13.1 79 214-293 542-629 (960)
24 4fu3_A Regulation of nuclear P 65.6 9.2 0.00032 33.2 5.6 84 329-412 25-114 (135)
25 3tjz_B Coatomer subunit gamma; 65.5 1.2E+02 0.004 31.0 14.7 159 276-472 59-219 (355)
26 1wa5_C Importin alpha RE-expor 63.1 2E+02 0.0067 32.3 22.9 33 220-252 122-154 (960)
27 3m1i_C Exportin-1; heat repeat 61.2 1.1E+02 0.0038 34.8 15.0 34 378-411 337-370 (1049)
28 4hxt_A De novo protein OR329; 59.9 95 0.0032 27.6 11.6 80 212-292 35-115 (252)
29 2jdq_A Importin alpha-1 subuni 59.2 1.4E+02 0.0047 29.3 19.6 260 183-462 8-309 (450)
30 2qk1_A Protein STU2; STU2P, XM 54.9 52 0.0018 31.2 9.3 98 367-470 128-233 (249)
31 1w63_A Adapter-related protein 51.6 2.5E+02 0.0086 30.0 17.8 164 281-463 403-581 (618)
32 4db6_A Armadillo repeat protei 51.4 77 0.0026 27.8 9.3 73 220-293 11-84 (210)
33 1w63_A Adapter-related protein 49.3 1.7E+02 0.0058 31.3 13.2 174 223-411 387-574 (618)
34 1sz9_A PCF11 protein; RNA poly 47.5 38 0.0013 30.2 6.6 90 323-412 23-115 (144)
35 1xqr_A HSPBP1 protein; armadil 44.1 2.4E+02 0.0081 27.6 15.8 99 192-294 56-156 (296)
36 4b8j_A Importin subunit alpha- 42.4 2.9E+02 0.0099 28.1 16.4 223 223-463 76-320 (528)
37 2x1g_F Cadmus; transport prote 41.7 4.1E+02 0.014 29.6 18.2 235 220-471 583-873 (971)
38 3m1i_C Exportin-1; heat repeat 40.4 2.2E+02 0.0076 32.4 13.0 175 219-407 14-217 (1049)
39 2x19_B Importin-13; nuclear tr 39.6 4.3E+02 0.015 29.2 15.7 93 357-458 464-556 (963)
40 1b3u_A Protein (protein phosph 39.5 3.1E+02 0.011 27.6 15.8 68 386-459 165-233 (588)
41 2vgl_B AP-2 complex subunit be 38.3 3.8E+02 0.013 28.2 15.6 22 334-355 212-233 (591)
42 1oks_A RNA polymerase alpha su 38.3 32 0.0011 26.3 3.7 46 285-332 5-50 (56)
43 2vgl_A Adaptor protein complex 37.6 4.1E+02 0.014 28.5 16.6 85 283-373 424-513 (621)
44 3ibv_A Exportin-T; karyopherin 37.2 45 0.0015 38.4 6.6 161 284-457 64-259 (980)
45 4flb_A Regulation of nuclear P 36.4 54 0.0018 28.2 5.6 82 330-411 27-112 (132)
46 4hxt_A De novo protein OR329; 35.5 2.3E+02 0.0079 25.0 17.6 217 223-461 4-244 (252)
47 4db8_A Armadillo-repeat protei 33.0 2.7E+02 0.0091 24.9 15.8 72 388-466 141-217 (252)
48 1wa5_B Importin alpha subunit; 31.7 4.3E+02 0.015 26.9 18.8 225 223-464 89-334 (530)
49 1eyh_A Epsin; superhelix of he 30.6 2.1E+02 0.0072 25.5 8.6 108 342-458 7-122 (144)
50 3gjx_A Exportin-1; transport, 29.7 4.6E+02 0.016 30.7 13.5 110 218-336 25-142 (1073)
51 3ibv_A Exportin-T; karyopherin 27.1 59 0.002 37.4 5.4 82 223-314 704-786 (980)
52 2iw3_A Elongation factor 3A; a 25.8 6.2E+02 0.021 29.4 13.5 211 222-459 96-325 (986)
53 2qk2_A LP04448P; mini spindles 23.6 4.1E+02 0.014 24.0 13.2 141 185-335 24-186 (242)
54 3opb_A SWI5-dependent HO expre 23.5 6.7E+02 0.023 28.4 12.9 171 192-374 17-243 (778)
55 3ul1_B Importin subunit alpha- 22.2 6.5E+02 0.022 25.8 14.1 107 210-316 132-243 (510)
56 3d9j_A RNA-binding protein 16; 21.8 2E+02 0.0068 25.4 6.7 79 331-410 30-118 (145)
57 2vgl_A Adaptor protein complex 20.9 7.8E+02 0.027 26.3 12.8 83 323-410 493-585 (621)
58 1vsy_5 Proteasome activator BL 20.8 2.7E+02 0.0094 32.3 9.3 78 379-458 168-245 (997)
No 1
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=100.00 E-value=2.7e-148 Score=1176.90 Aligned_cols=437 Identities=49% Similarity=0.886 Sum_probs=382.4
Q ss_pred cCCCCccccccccCCCcCCCccccccccCCCCCCCCchhhHHHHHHHHhhccccccc-cCCCCCchhhHHHHHHHHHHHH
Q 010120 58 SSAGKSNVATKRTSSAVFPASVVAGIEPLLPFKDVPNGEKMNLFVSKVSLCCVTFDF-TDPTKNCVEKDVKKQTLIELLD 136 (518)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~l~dv~~~e~~~Lf~~Kl~~C~~ifDF-sdp~~d~~~Ke~Kr~tL~EL~d 136 (518)
.+|+...+..++++|++|+. ++||+|+|||++++++||++||++||++||| +||.+|+++||+||+||+||+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~------~~lp~l~d~~~~e~~~lf~~Kl~~C~~ifDF~~dp~~d~~~Ke~Kr~~L~el~~ 78 (449)
T 2npp_B 5 NKAGSRMVVDAANSNGPFQP------VVLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVE 78 (449)
T ss_dssp ---------------------------------------CCCCTTTHHHHHHHHHHHCCCCSSSCCCCCSHHHHHHHHHH
T ss_pred CCCCcccCCCCcCCCCCCCC------CCCCCCCCCChHHHHHHHHHHHHHhCCeeCCCCCchhhhHHHHHHHHHHHHHHH
Confidence 34455556678888888874 4999999999999999999999999999999 9999999999999999999999
Q ss_pred HHhcCCCCCCHHHHHHHHHHhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHhhccCChhHhhh
Q 010120 137 FVAAGSMKFSEPAILAMCRMCAVNLFRVFPPNYRCSSHTTGENDDDEPMFDPSWPHLQIVYDLLLKFITSSCLDAKVAKR 216 (518)
Q Consensus 137 ~v~~~~~~lte~~~~~i~~Mvs~NiFR~lPp~~~~~~~~~~d~eedep~~e~sWpHLqlVYe~llrfv~s~~~d~~~ak~ 216 (518)
|++++++++||++|+++++||++||||++||++++.+ ..+|+|||||++||+|||||+||++|+|||+||+||+++||+
T Consensus 79 ~v~~~~~~lte~i~~~i~~Mi~~NiFR~lPp~~~~~~-~~~d~eedep~~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~ 157 (449)
T 2npp_B 79 YITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNPTG-AEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKK 157 (449)
T ss_dssp HHHSSCCSCCCSSCCHHHHHHHHHHCCCCCCCSSCCS-SSSCGGGCCCCCCTTHHHHHHHHHHHHHHHTSTTCCSTTGGG
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCccc-ccCCCccccccccccchHHHHHHHHHHHHHHccCCChhhhhh
Confidence 9999999999999999999999999999999887643 479999999999999999999999999999999999999999
Q ss_pred hCCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHhhhhhccccccChHHHHHHHHHHHhcCCC
Q 010120 217 YIDHSFILRLLDLFDSDDPRERECLKTILHRVYGKFMVHRPFIRKSMSNIFYRFVFETEKHNGIAELLEILGSIISGFAL 296 (518)
Q Consensus 217 ~Id~~Fv~~Ll~lfdSeDpRERd~LKtiLHrIY~Kf~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFal 296 (518)
|||++||++||++||||||||||+|||+||||||||+++|+|||++|||+|++||||+++||||+||||||||||||||+
T Consensus 158 ~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~ 237 (449)
T 2npp_B 158 YIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFAL 237 (449)
T ss_dssp TSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCS
T ss_pred hCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhhcCCCCCchhhhhhhHHHHHHHHHHhCCCCHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhcCh
Q 010120 297 PLKEEHKIFLRRVIIPLHKPKSLGTYFQQLSYCVMQFIEKEPKLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINM 376 (518)
Q Consensus 297 PLKeEHk~Fl~rvLiPLHk~k~~~~yh~qL~yCv~qfleKDp~L~~~vi~glLk~WP~tns~KEv~FL~EleeILe~~~~ 376 (518)
|||+||++||.||||||||+++++.||+||+|||+||++|||+|+++|++|||||||+|||+||||||+|||+||+.++|
T Consensus 238 PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~ 317 (449)
T 2npp_B 238 PLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEP 317 (449)
T ss_dssp SCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCH
T ss_pred CCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCchHHHHHHHHHhhcchhHHHHHHhccccccccchHHHHHHhhccchHHHHHHHHHHHHHH
Q 010120 377 VEFQKVMVSLFWRIGCCINSFHFQVAERALFLWNNDQIVNLIAHNRQVILPILLPVLEKNAQSHWNQAVLNLTLNVRKMF 456 (518)
Q Consensus 377 ~ef~~i~~pLF~~ia~ci~S~hfqVAERAL~lwnNe~~~~li~~n~~~IlPii~p~L~~~~~~HWn~~V~~la~~vlkil 456 (518)
++|++++.|||+|||+|++|+|||||||||++|+|++|+++|++|+++|+|+|||+|++++++|||++|+++|++|+++|
T Consensus 318 ~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l 397 (449)
T 2npp_B 318 SEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLF 397 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHHhchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCC
Q 010120 457 SEMDDVLFMSCHAQYREQVANLSLVDQRRKEAWEQLENAARLQPI 501 (518)
Q Consensus 457 ~e~D~~lF~~~~~~~~~~~~~~~~~~~~r~~~W~~le~~A~~~~~ 501 (518)
||||+++|++|.++|+++++++++++++|+++|++|+++|++++.
T Consensus 398 ~e~d~~lf~~c~~~~~~~~~~~~~~~~~r~~~W~~i~~~A~~~~~ 442 (449)
T 2npp_B 398 MEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIENLAKANPQ 442 (449)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHTSCC-----------------
T ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 999999999999999999999999999999999999999976654
No 2
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=100.00 E-value=9.9e-146 Score=1142.73 Aligned_cols=401 Identities=50% Similarity=0.928 Sum_probs=395.3
Q ss_pred CchhhHHHHHHHHhhccccccc-cCCCCCchhhHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhccccCCCCCCC
Q 010120 93 PNGEKMNLFVSKVSLCCVTFDF-TDPTKNCVEKDVKKQTLIELLDFVAAGSMKFSEPAILAMCRMCAVNLFRVFPPNYRC 171 (518)
Q Consensus 93 ~~~e~~~Lf~~Kl~~C~~ifDF-sdp~~d~~~Ke~Kr~tL~EL~d~v~~~~~~lte~~~~~i~~Mvs~NiFR~lPp~~~~ 171 (518)
|++||++||++||++||++||| +||.+|+++||+||+||+||+||++++++++||++|+++++||++||||++||++++
T Consensus 1 ~~~e~~~lf~~Kl~~C~~ifDF~~d~~~d~~~Ke~Kr~~L~el~~~~~~~~~~lte~~~~~~~~Mi~~NiFR~lPp~~~~ 80 (403)
T 3fga_B 1 PPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNP 80 (403)
T ss_dssp CCSHHHHHHHHHHHHTTCCCCSSSSTTTTHHHHHHHHHHHHHHHHHHHHSCSCCCTTHHHHHHHHHHHHHCCCCCCCSSC
T ss_pred ChhHHHHHHHHHHHHhCCccCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCC
Confidence 6789999999999999999999 899999999999999999999999999999999999999999999999999998887
Q ss_pred CCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHhhccCChhHhhhhCCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhc
Q 010120 172 SSHTTGENDDDEPMFDPSWPHLQIVYDLLLKFITSSCLDAKVAKRYIDHSFILRLLDLFDSDDPRERECLKTILHRVYGK 251 (518)
Q Consensus 172 ~~~~~~d~eedep~~e~sWpHLqlVYe~llrfv~s~~~d~~~ak~~Id~~Fv~~Ll~lfdSeDpRERd~LKtiLHrIY~K 251 (518)
+ +.++|+|||||++||||||||+|||+|+||++||+||+++||+|||++||++|+++||||||||||+|||+|||||||
T Consensus 81 ~-~~~~d~eedep~~e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~k 159 (403)
T 3fga_B 81 T-GAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGK 159 (403)
T ss_dssp C-STTCCGGGCCCCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred c-cccCCccccccccccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHh
Confidence 4 357999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHhhhhhccccccChHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCCCCCchhhhhhhHHHHHH
Q 010120 252 FMVHRPFIRKSMSNIFYRFVFETEKHNGIAELLEILGSIISGFALPLKEEHKIFLRRVIIPLHKPKSLGTYFQQLSYCVM 331 (518)
Q Consensus 252 f~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFalPLKeEHk~Fl~rvLiPLHk~k~~~~yh~qL~yCv~ 331 (518)
|+++|+|||++|||+||+||||+++|||||||||||||||||||+|||+||++||.||||||||+++++.||+||+|||+
T Consensus 160 f~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~ 239 (403)
T 3fga_B 160 FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVV 239 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHhhcc
Q 010120 332 QFIEKEPKLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINMVEFQKVMVSLFWRIGCCINSFHFQVAERALFLWNN 411 (518)
Q Consensus 332 qfleKDp~L~~~vi~glLk~WP~tns~KEv~FL~EleeILe~~~~~ef~~i~~pLF~~ia~ci~S~hfqVAERAL~lwnN 411 (518)
||++|||+|+++|++|||||||+|||+||||||+||++||+.++|++|++++.|||+|||+|++|+|||||||||++|||
T Consensus 240 qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnN 319 (403)
T 3fga_B 240 QFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNN 319 (403)
T ss_dssp HHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGC
T ss_pred HHHHhCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhccccccccchHHHHHHhhccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 010120 412 DQIVNLIAHNRQVILPILLPVLEKNAQSHWNQAVLNLTLNVRKMFSEMDDVLFMSCHAQYREQVANLSLVDQRRKEAWEQ 491 (518)
Q Consensus 412 e~~~~li~~n~~~IlPii~p~L~~~~~~HWn~~V~~la~~vlkil~e~D~~lF~~~~~~~~~~~~~~~~~~~~r~~~W~~ 491 (518)
++|+++|++|++.|+|+|+|+|++++++|||++|+++|++|+|+|||||+++|++|+++|+++++++++++++|+++|++
T Consensus 320 e~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~~lF~~~~~~~~~~~~~~~~~~~~r~~~W~~ 399 (403)
T 3fga_B 320 EYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVK 399 (403)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 010120 492 LEN 494 (518)
Q Consensus 492 le~ 494 (518)
||+
T Consensus 400 ~~~ 402 (403)
T 3fga_B 400 IEN 402 (403)
T ss_dssp CSC
T ss_pred Hhc
Confidence 874
No 3
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=100.00 E-value=9.2e-132 Score=1034.15 Aligned_cols=368 Identities=51% Similarity=0.931 Sum_probs=325.3
Q ss_pred ccccccCCCcCCCccccccccCCCCCCCCchhhHHHHHHHHhhccccccc-cCCCCCchhhHHHHHHHHHHHHHHhcCCC
Q 010120 65 VATKRTSSAVFPASVVAGIEPLLPFKDVPNGEKMNLFVSKVSLCCVTFDF-TDPTKNCVEKDVKKQTLIELLDFVAAGSM 143 (518)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~lP~l~dv~~~e~~~Lf~~Kl~~C~~ifDF-sdp~~d~~~Ke~Kr~tL~EL~d~v~~~~~ 143 (518)
++.+++++++|+. ++||+|+|+|++|+++||++||++||++||| +||.+|+++||+||+||+||+||++++++
T Consensus 24 ~~~~~~~~~~~~~------~~lp~l~d~~~~e~~~lf~~Kl~~C~~ifDF~~dp~~d~~~Ke~Kr~~L~el~~~v~~~~~ 97 (392)
T 2jak_A 24 VVDAANSNGPFQP------VVLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRN 97 (392)
T ss_dssp ------------------------CCCCC-CSCSHHHHHHHHHTTCCCCCSSCSSSSHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred ccCCcCCCCCCCC------CCCCCCCCCChHHHHHHHHHHHHHhCCeeCCCCCcchhhHHHHHHHHHHHHHHHHHhcCCC
Confidence 3345677777763 4999999999999999999999999999999 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHhhccCChhHhhhhCCHHHH
Q 010120 144 KFSEPAILAMCRMCAVNLFRVFPPNYRCSSHTTGENDDDEPMFDPSWPHLQIVYDLLLKFITSSCLDAKVAKRYIDHSFI 223 (518)
Q Consensus 144 ~lte~~~~~i~~Mvs~NiFR~lPp~~~~~~~~~~d~eedep~~e~sWpHLqlVYe~llrfv~s~~~d~~~ak~~Id~~Fv 223 (518)
++||++|+++++||++||||++||.+++.. ..+|+|||||++||||||||+||++|+|||+||+|++++||+|||++||
T Consensus 98 ~lte~i~~~i~~Mi~~NiFR~lPp~~~~~~-~~~d~eedep~~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi 176 (392)
T 2jak_A 98 VITEPIYPEVVHMFAVNMFRTLPPSSNPTG-AEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFV 176 (392)
T ss_dssp CCCTTHHHHHHHHHHHHHCSCCCC----------------CCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCCccc-ccCCccccccccccCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHH
Confidence 999999999999999999999999887653 4789999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHhhhhhccccccChHHHHHHHHHHHhcCCCCChHHHH
Q 010120 224 LRLLDLFDSDDPRERECLKTILHRVYGKFMVHRPFIRKSMSNIFYRFVFETEKHNGIAELLEILGSIISGFALPLKEEHK 303 (518)
Q Consensus 224 ~~Ll~lfdSeDpRERd~LKtiLHrIY~Kf~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFalPLKeEHk 303 (518)
.+|+++||||||||||+|||+||||||||+++|+|||++|||+|++||||+++||||+||||||||||||||+|||+||+
T Consensus 177 ~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk 256 (392)
T 2jak_A 177 LQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHK 256 (392)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHH
T ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCchhhhhhhHHHHHHHHHHhCCCCHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhcChHHHHHHH
Q 010120 304 IFLRRVIIPLHKPKSLGTYFQQLSYCVMQFIEKEPKLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINMVEFQKVM 383 (518)
Q Consensus 304 ~Fl~rvLiPLHk~k~~~~yh~qL~yCv~qfleKDp~L~~~vi~glLk~WP~tns~KEv~FL~EleeILe~~~~~ef~~i~ 383 (518)
+||.||||||||+++++.||+||+|||+||++|||+|+++|++|||||||+|||+||||||+|||+||+.+++++|++++
T Consensus 257 ~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~ 336 (392)
T 2jak_A 257 IFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIM 336 (392)
T ss_dssp HHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCchHHHHHHHHHhhcchhHHHHHHhccccccccchHHHHHHhhc
Q 010120 384 VSLFWRIGCCINSFHFQVAERALFLWNNDQIVNLIAHNRQVILPILLPVLEKNAQS 439 (518)
Q Consensus 384 ~pLF~~ia~ci~S~hfqVAERAL~lwnNe~~~~li~~n~~~IlPii~p~L~~~~~~ 439 (518)
.|||+|||+|++|+|||||||||++|||++|+++|++|+++|+|+|||+|++++++
T Consensus 337 ~~lF~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~ilPii~~~L~~~s~~ 392 (392)
T 2jak_A 337 EPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKT 392 (392)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHGGGGCHHHHHHHHHTHHHHTTTSCC--------
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHhCcHHHHHHHHhhhccchhhhhHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999874
No 4
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=94.51 E-value=5 Score=43.68 Aligned_cols=230 Identities=11% Similarity=0.077 Sum_probs=120.9
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhhcccC-chhHHH-HHHHHHHhhhhhccccccChHHHHHHHHHHHhcCC----
Q 010120 222 FILRLLDLFDSDDPRERECLKTILHRVYGKFMV-HRPFIR-KSMSNIFYRFVFETEKHNGIAELLEILGSIISGFA---- 295 (518)
Q Consensus 222 Fv~~Ll~lfdSeDpRERd~LKtiLHrIY~Kf~~-~R~fIR-k~Innif~~fiyEte~hnGIaELLeIlgSIInGFa---- 295 (518)
++.-+.++..++|++-|...-..|.++...+.. .++++. ..+. .+...+. +..-.-....++++..+.....
T Consensus 218 il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~-~~~~~~~-~~~~~v~~~al~~l~~l~~~~~~~~~ 295 (876)
T 1qgr_A 218 IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFA-ITIEAMK-SDIDEVALQGIEFWSNVCDEEMDLAI 295 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHH-HHHHHHT-CSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHhc-CCchHHHHHHHHHHHHHHHHHHhHhh
Confidence 455566678889999998777777776654432 345555 3333 3322221 1111223345666666654310
Q ss_pred ----------C---CCh---HHHHHHHHHHhhcCCCC-------CchhhhhhhHHHHHHHHHHhCC-CCHHHHHHHhhcc
Q 010120 296 ----------L---PLK---EEHKIFLRRVIIPLHKP-------KSLGTYFQQLSYCVMQFIEKEP-KLSSTVINGLLKY 351 (518)
Q Consensus 296 ----------l---PLK---eEHk~Fl~rvLiPLHk~-------k~~~~yh~qL~yCv~qfleKDp-~L~~~vi~glLk~ 351 (518)
. +.. ..|..-+...++.+-.. ... .....-..|+....+..+ .+...++..+...
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~-~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~ 374 (876)
T 1qgr_A 296 EASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDW-NPCKAAGVCLMLLATCCEDDIVPHVLPFIKEH 374 (876)
T ss_dssp HHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCC-CHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred hhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhccccccccccc-HHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHH
Confidence 0 110 01111112222222110 011 111222334433333322 2344455444443
Q ss_pred CCCCCChhHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHhhcchhHHHHHHhc--cccccccc
Q 010120 352 WPITNSQKEVMFLGEIEEILEAINMVEFQKVMVSLFWRIGCCINSFHFQVAERALFLWNNDQIVNLIAHN--RQVILPIL 429 (518)
Q Consensus 352 WP~tns~KEv~FL~EleeILe~~~~~ef~~i~~pLF~~ia~ci~S~hfqVAERAL~lwnNe~~~~li~~n--~~~IlPii 429 (518)
.--.+....-.-+.-+..+.+.+.++.+......+...+-.++.++|..|-++|+..+. .+...+... ....++.+
T Consensus 375 l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~--~~~~~~~~~~~~~~~l~~~ 452 (876)
T 1qgr_A 375 IKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVG--RICELLPEAAINDVYLAPL 452 (876)
T ss_dssp TTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHH--HHHHHCGGGTSSTTTHHHH
T ss_pred ccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HHHHhCchhcccHHHHHHH
Confidence 32233333334445566677777777777777888888889999999999988887654 343333221 23456777
Q ss_pred hHHHHHHhhccchHHHHHHHHHHHHHHHh
Q 010120 430 LPVLEKNAQSHWNQAVLNLTLNVRKMFSE 458 (518)
Q Consensus 430 ~p~L~~~~~~HWn~~V~~la~~vlkil~e 458 (518)
++.|.+....+ ..|+..+..++..+.+
T Consensus 453 l~~l~~~l~~~--~~v~~~a~~al~~l~~ 479 (876)
T 1qgr_A 453 LQCLIEGLSAE--PRVASNVCWAFSSLAE 479 (876)
T ss_dssp HHHHHHHTTSC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--HHHHHHHHHHHHHHHH
Confidence 88888777664 6777777777666654
No 5
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=94.50 E-value=0.58 Score=46.68 Aligned_cols=222 Identities=13% Similarity=0.048 Sum_probs=122.4
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhhc-cc-------------CchhHHHHHHHHHHhhhhhccccccChHHHHHHHH
Q 010120 223 ILRLLDLFDSDDPRERECLKTILHRVYGK-FM-------------VHRPFIRKSMSNIFYRFVFETEKHNGIAELLEILG 288 (518)
Q Consensus 223 v~~Ll~lfdSeDpRERd~LKtiLHrIY~K-f~-------------~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlg 288 (518)
+.++|..+-|+|+..|..-...|..+... .. ...+-+|..-.-+|-+++..... .+-.+...
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~-~~~~~~~~--- 78 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDP-DIKAQYQQ--- 78 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSH-HHHHHHHH---
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccch-HHHHHHHh---
Confidence 45677778888988887766666554431 11 01233444444444443311100 00000000
Q ss_pred HHHhcCCCCChHHHHHHHHHHhhcCCCCCchhhhhhhHHHHHHHHHHhC------CCCHHHHHHHhhccCCCC--CChhH
Q 010120 289 SIISGFALPLKEEHKIFLRRVIIPLHKPKSLGTYFQQLSYCVMQFIEKE------PKLSSTVINGLLKYWPIT--NSQKE 360 (518)
Q Consensus 289 SIInGFalPLKeEHk~Fl~rvLiPLHk~k~~~~yh~qL~yCv~qfleKD------p~L~~~vi~glLk~WP~t--ns~KE 360 (518)
.-..+.++.+..+...|+++-....-. . .+++.|+..+...+ |.+...++..+- -. +....
T Consensus 79 -----~~~~l~~~~~~~ik~~ll~~l~~~~~~-v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~----~~~~~~~~r 147 (462)
T 1ibr_B 79 -----RWLAIDANARREVKNYVLQTLGTETYR-P-SSASQCVAGIACAEIPVNQWPELIPQLVANVT----NPNSTEHMK 147 (462)
T ss_dssp -----HHHTSCHHHHHHHHHHHHHHTTCCCSS-S-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHH----CTTCCHHHH
T ss_pred -----hhhcCCHHHHHHHHHHHHHHhCCCCch-h-hHHHHHHHHHHHHhccccccHHHHHHHHHHhc----cCCCCHHHH
Confidence 012366788888888888876665433 3 88999998887654 233333333331 12 22333
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHhhCCc--hHHHHHHHHHhhcc--hhHHHHHHhccccccccchHHHHHH
Q 010120 361 VMFLGEIEEILEAINMVEFQKVMVSLFWRIGCCINSF--HFQVAERALFLWNN--DQIVNLIAHNRQVILPILLPVLEKN 436 (518)
Q Consensus 361 v~FL~EleeILe~~~~~ef~~i~~pLF~~ia~ci~S~--hfqVAERAL~lwnN--e~~~~li~~n~~~IlPii~p~L~~~ 436 (518)
..-|.-+..+.+...++.+......++..+..|+.++ +-.|-..|+....+ +.+-..+.. ....+.+.+.|.+.
T Consensus 148 ~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~--~~~~~~l~~~l~~~ 225 (462)
T 1ibr_B 148 ESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDK--ESERHFIMQVVCEA 225 (462)
T ss_dssp HHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTS--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHh
Confidence 3456667777776666666777778888899999987 77777777664433 111111110 00112234444444
Q ss_pred hhccchHHHHHHHHHHHHHHHhhCHH
Q 010120 437 AQSHWNQAVLNLTLNVRKMFSEMDDV 462 (518)
Q Consensus 437 ~~~HWn~~V~~la~~vlkil~e~D~~ 462 (518)
.. +=+..|+..++.++..+.+..++
T Consensus 226 ~~-~~~~~vr~~~~~~l~~l~~~~~~ 250 (462)
T 1ibr_B 226 TQ-CPDTRVRVAALQNLVKIMSLYYQ 250 (462)
T ss_dssp TT-CSSHHHHHHHHHHHHHHHHHCGG
T ss_pred cC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 33 33567888888888777765543
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=94.26 E-value=7.4 Score=42.20 Aligned_cols=263 Identities=12% Similarity=0.086 Sum_probs=137.1
Q ss_pred hhHHHHHHHHHHHHhhccCChhH----h---hh---hCCH--------H-HHHHHHhhcCCCChHHHHHHHHHHHHHhhc
Q 010120 191 PHLQIVYDLLLKFITSSCLDAKV----A---KR---YIDH--------S-FILRLLDLFDSDDPRERECLKTILHRVYGK 251 (518)
Q Consensus 191 pHLqlVYe~llrfv~s~~~d~~~----a---k~---~Id~--------~-Fv~~Ll~lfdSeDpRERd~LKtiLHrIY~K 251 (518)
+|..-+...+...+.+++-++.+ + .. +++. . ++.-|...+.++|++.|...-..|.+|..+
T Consensus 175 ~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~ 254 (861)
T 2bpt_A 175 SSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSK 254 (861)
T ss_dssp GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 57777777777777665322211 1 11 2221 2 344466678899999999887777777665
Q ss_pred ccC-chhHHHHHHHHHHhhhhhccccccChHHHHHHHHHHHhcCC-----------CC-----ChHHHHHHHHHHhhcCC
Q 010120 252 FMV-HRPFIRKSMSNIFYRFVFETEKHNGIAELLEILGSIISGFA-----------LP-----LKEEHKIFLRRVIIPLH 314 (518)
Q Consensus 252 f~~-~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFa-----------lP-----LKeEHk~Fl~rvLiPLH 314 (518)
+.. .++++.+.+-..+...+.. ....-....++++++++.... .| .-..+...+..+|+..-
T Consensus 255 ~~~~~~~~l~~~l~~~~~~~~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l 333 (861)
T 2bpt_A 255 YYTFMKPYMEQALYALTIATMKS-PNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLL 333 (861)
T ss_dssp HGGGCHHHHHHTHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 432 3455553333344443322 122223456777777765320 00 00111122223333322
Q ss_pred CCCc------hhhhhhhHHHHHHHHHHhCC-CCHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhcChHHHHHHHHHHH
Q 010120 315 KPKS------LGTYFQQLSYCVMQFIEKEP-KLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINMVEFQKVMVSLF 387 (518)
Q Consensus 315 k~k~------~~~yh~qL~yCv~qfleKDp-~L~~~vi~glLk~WP~tns~KEv~FL~EleeILe~~~~~ef~~i~~pLF 387 (518)
+... -.........|+..+...-+ .....++..+...---.+....-.-+.-+..|.+.+.++.+...+..+.
T Consensus 334 ~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il 413 (861)
T 2bpt_A 334 TRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQAL 413 (861)
T ss_dssp TCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHH
T ss_pred HhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2110 00112223334433333222 2333444443332211222222223444666777667788888888899
Q ss_pred HHHHHhhCCchHHHHHHHHHhhcchhHHHHHHhc--cccccccchHHHHHHhhccchHHHHHHHHHHHHHHHh
Q 010120 388 WRIGCCINSFHFQVAERALFLWNNDQIVNLIAHN--RQVILPILLPVLEKNAQSHWNQAVLNLTLNVRKMFSE 458 (518)
Q Consensus 388 ~~ia~ci~S~hfqVAERAL~lwnNe~~~~li~~n--~~~IlPii~p~L~~~~~~HWn~~V~~la~~vlkil~e 458 (518)
..+..++.++|-.|-++|+..+. .+...+..+ ....++-++|.|.+..... ..|+..++.++..+.+
T Consensus 414 ~~l~~~l~d~~~~vr~~a~~~l~--~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~ 482 (861)
T 2bpt_A 414 PSILNLMNDQSLQVKETTAWCIG--RIADSVAESIDPQQHLPGVVQACLIGLQDH--PKVATNCSWTIINLVE 482 (861)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHH--HHHHHHGGGSCTTTTHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHHHHH--HHHHHhhhhcCCHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHH
Confidence 99999999999999888865432 333333322 2344666777777766665 6777777777765544
No 7
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=93.57 E-value=1.1 Score=49.63 Aligned_cols=226 Identities=12% Similarity=0.049 Sum_probs=125.8
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHhhhhhccccccChHHH-HHHHHHHHhcCCCCChHH
Q 010120 223 ILRLLDLFDSDDPRERECLKTILHRVYGKFMVHRPFIRKSMSNIFYRFVFETEKHNGIAEL-LEILGSIISGFALPLKEE 301 (518)
Q Consensus 223 v~~Ll~lfdSeDpRERd~LKtiLHrIY~Kf~~~R~fIRk~Innif~~fiyEte~hnGIaEL-LeIlgSIInGFalPLKeE 301 (518)
+.++|...-|+|+..|..-...|..++. .-.|. .....++... +.....+-.+ .-.|...|+..-.++.++
T Consensus 15 l~~~l~~~~s~d~~~r~~Ae~~L~~~~~----~p~~~-~~l~~il~~~---~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~ 86 (852)
T 4fdd_A 15 ILQLLKESQSPDTTIQRTVQQKLEQLNQ----YPDFN-NYLIFVLTKL---KSEDEPTRSLSGLILKNNVKAHFQNFPNG 86 (852)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHTT----SHHHH-HHHHHHHHTC---TTSCHHHHHHHHHHHHHHTTTSGGGCCHH
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHHHh----CCCHH-HHHHHHHhcc---CCCChHHHHHHHHHHHHHHHHccCCCCHH
Confidence 4556666678888888888888766543 11111 1111111100 1111111111 112233343333457889
Q ss_pred HHHHHHHHhhcCCCCCchhhhhhhHHHHHHHHHHhCC-----CCHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhcCh
Q 010120 302 HKIFLRRVIIPLHKPKSLGTYFQQLSYCVMQFIEKEP-----KLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINM 376 (518)
Q Consensus 302 Hk~Fl~rvLiPLHk~k~~~~yh~qL~yCv~qfleKDp-----~L~~~vi~glLk~WP~tns~KEv~FL~EleeILe~~~~ 376 (518)
.+.++...|+++-..+. ..--.+++.|+......|+ .|...++..+- -.+..-.-.-+.-+..|++..++
T Consensus 87 ~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~----~~~~~~r~~al~~L~~i~~~~~~ 161 (852)
T 4fdd_A 87 VTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGELQNWPDLLPKLCSLLD----SEDYNTCEGAFGALQKICEDSAE 161 (852)
T ss_dssp HHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHS----CSSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHHHhHH
Confidence 99999999998866443 3567899999999988773 33333333322 22222222344445566665543
Q ss_pred HHHHH-----HHHHHHHHHHHhhCCchHHHHHHHHHhhcchhHHHHHHhccccccccchHHHHHHhhccchHHHHHHHHH
Q 010120 377 VEFQK-----VMVSLFWRIGCCINSFHFQVAERALFLWNNDQIVNLIAHNRQVILPILLPVLEKNAQSHWNQAVLNLTLN 451 (518)
Q Consensus 377 ~ef~~-----i~~pLF~~ia~ci~S~hfqVAERAL~lwnNe~~~~li~~n~~~IlPii~p~L~~~~~~HWn~~V~~la~~ 451 (518)
. +.. ....++..+.+|+.+++..|-..|+....+ ++....+.-...++-+++.|.+..... +..|+..++.
T Consensus 162 ~-~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~--~~~~~~~~~~~~~~~~l~~l~~~~~d~-~~~vr~~a~~ 237 (852)
T 4fdd_A 162 I-LDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQ--FIISRTQALMLHIDSFIENLFALAGDE-EPEVRKNVCR 237 (852)
T ss_dssp H-HHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHT--TTTTTCHHHHTSHHHHHHHHHHHHTCC-CHHHHHHHHH
T ss_pred H-hchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--HHhcccHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHH
Confidence 2 221 244566667778899999998888765532 211111111122345666666654433 5689999999
Q ss_pred HHHHHHhhCHHHHH
Q 010120 452 VRKMFSEMDDVLFM 465 (518)
Q Consensus 452 vlkil~e~D~~lF~ 465 (518)
++..+.+..++.+.
T Consensus 238 ~L~~l~~~~~~~~~ 251 (852)
T 4fdd_A 238 ALVMLLEVRMDRLL 251 (852)
T ss_dssp HHHHHHHHCHHHHG
T ss_pred HHHHHHHhCHHHHH
Confidence 99999988876654
No 8
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=92.94 E-value=2.3 Score=39.64 Aligned_cols=176 Identities=10% Similarity=-0.002 Sum_probs=116.1
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHhhc---ccCchhHHHHHHHHHHhhhhhccccccChHHHHHHHHHHHhcCCCCChHHH
Q 010120 226 LLDLFDSDDPRERECLKTILHRVYGK---FMVHRPFIRKSMSNIFYRFVFETEKHNGIAELLEILGSIISGFALPLKEEH 302 (518)
Q Consensus 226 Ll~lfdSeDpRERd~LKtiLHrIY~K---f~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFalPLKeEH 302 (518)
+++.++|.|.+||..--.-|..+-.. +.. .... .+-+.+.+.+-.+...+-....+..+|.+.++..-.+.. |
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~--~~~~-~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~-~ 95 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLEN--GEYG-ALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN-Y 95 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCC--CCCH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH-H
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCC--CCHH-HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH-H
Confidence 55677899999998766666666443 221 1122 223344444421233333456789999999887655544 4
Q ss_pred HHHHHHHhhcCCCCCchhhhhhhHHHHHHHHHHhCCCCHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhcChH-HHHH
Q 010120 303 KIFLRRVIIPLHKPKSLGTYFQQLSYCVMQFIEKEPKLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINMV-EFQK 381 (518)
Q Consensus 303 k~Fl~rvLiPLHk~k~~~~yh~qL~yCv~qfleKDp~L~~~vi~glLk~WP~tns~KEv~FL~EleeILe~~~~~-ef~~ 381 (518)
..-+...|+...+.+.- .-......++..+++.-+ ...++..|+...--.|++=...-++-|..++....|+ .+..
T Consensus 96 ~~~ilp~ll~~l~d~~~-~vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~ 172 (242)
T 2qk2_A 96 ASACVPSLLEKFKEKKP-NVVTALREAIDAIYASTS--LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKK 172 (242)
T ss_dssp HHHHHHHHHHGGGCCCH-HHHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHH
T ss_pred HHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHH
Confidence 44444566666555543 235778888888887543 4667777777766667766777888888988888766 4667
Q ss_pred HHHHHHHHHHHhhCCchHHHHHHHHHh
Q 010120 382 VMVSLFWRIGCCINSFHFQVAERALFL 408 (518)
Q Consensus 382 i~~pLF~~ia~ci~S~hfqVAERAL~l 408 (518)
....+...+..|++..+..|=+.|...
T Consensus 173 ~l~~l~p~l~~~l~D~~~~VR~~A~~~ 199 (242)
T 2qk2_A 173 LLKLLTTSLVKTLNEPDPTVRDSSAEA 199 (242)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 777888889999999999888888763
No 9
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=92.90 E-value=3 Score=39.99 Aligned_cols=180 Identities=8% Similarity=0.046 Sum_probs=123.8
Q ss_pred hhcCCCChHHHHHHHHHHHH-Hh-h--cccCchhHHHHHHHHHHhhhhhccccccChHHHHHHHHHHHhcCC-CCChHHH
Q 010120 228 DLFDSDDPRERECLKTILHR-VY-G--KFMVHRPFIRKSMSNIFYRFVFETEKHNGIAELLEILGSIISGFA-LPLKEEH 302 (518)
Q Consensus 228 ~lfdSeDpRERd~LKtiLHr-IY-~--Kf~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFa-lPLKeEH 302 (518)
+.+.|.|.+||...-.-|.. +- | +...+..-. ..+-+.+.+.+-.+.+..-....+.++|.+.+|.. -.....|
T Consensus 23 ~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~-~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y 101 (249)
T 2qk1_A 23 ERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNY-SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDY 101 (249)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHH
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence 34589999999887777766 65 3 333111100 11122333333223333345677999999999998 5664245
Q ss_pred HHHHHHHhhcCCCCCchhhhhhhHHHHHHHHHHhC-C----CCHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhcCh-
Q 010120 303 KIFLRRVIIPLHKPKSLGTYFQQLSYCVMQFIEKE-P----KLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINM- 376 (518)
Q Consensus 303 k~Fl~rvLiPLHk~k~~~~yh~qL~yCv~qfleKD-p----~L~~~vi~glLk~WP~tns~KEv~FL~EleeILe~~~~- 376 (518)
..-+.-.||..++-+.-. --....+|+..+++.= | .-.+.++..|+..+--.|.+=....|.-|..+++....
T Consensus 102 ~~~llp~ll~~l~dkk~~-V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~ 180 (249)
T 2qk1_A 102 VSLVFTPLLDRTKEKKPS-VIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDG 180 (249)
T ss_dssp HHHHHHHHHHGGGCCCHH-HHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCc
Confidence 555566777777776633 3578889999999854 2 11446777777777666777777889999999988764
Q ss_pred -HHHHHHH-HHHHHHHHHhhCCchHHHHHHHHHhh
Q 010120 377 -VEFQKVM-VSLFWRIGCCINSFHFQVAERALFLW 409 (518)
Q Consensus 377 -~ef~~i~-~pLF~~ia~ci~S~hfqVAERAL~lw 409 (518)
..|.+.+ ..+...+.+|+.-..-.|=++|....
T Consensus 181 ~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l 215 (249)
T 2qk1_A 181 YSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESF 215 (249)
T ss_dssp SHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 8899988 89999999999999999988887643
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=92.63 E-value=1.9 Score=46.89 Aligned_cols=226 Identities=9% Similarity=0.039 Sum_probs=102.9
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhhcccC---chhHHHHHHHHHHhhhhhccccccChHHHHHHHHHHHhcCC---
Q 010120 222 FILRLLDLFDSDDPRERECLKTILHRVYGKFMV---HRPFIRKSMSNIFYRFVFETEKHNGIAELLEILGSIISGFA--- 295 (518)
Q Consensus 222 Fv~~Ll~lfdSeDpRERd~LKtiLHrIY~Kf~~---~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFa--- 295 (518)
++..|+..+..++++-|......|.++-..+.. ...++...+..++ +.+-+. ..--......++.++.++.
T Consensus 412 il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~-~~l~~~--~~v~~~a~~al~~l~~~~~~~~ 488 (861)
T 2bpt_A 412 ALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACL-IGLQDH--PKVATNCSWTIINLVEQLAEAT 488 (861)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHH-HHHTSC--HHHHHHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHH-HHhccC--hHHHHHHHHHHHHHHHhccccc
Confidence 455566677777777777666666555443221 1334444444322 222111 1111123445555555543
Q ss_pred -CCChHHHHHHHHHHhhcCCCCCch-hhhhhhHHHHHHHHHHhCCCCHHH--------HHHHhhccCCCC----C-----
Q 010120 296 -LPLKEEHKIFLRRVIIPLHKPKSL-GTYFQQLSYCVMQFIEKEPKLSST--------VINGLLKYWPIT----N----- 356 (518)
Q Consensus 296 -lPLKeEHk~Fl~rvLiPLHk~k~~-~~yh~qL~yCv~qfleKDp~L~~~--------vi~glLk~WP~t----n----- 356 (518)
-.+. .|..-+...|+++-+.... .........++..+++..+.-..+ ++..+.+.-|.. +
T Consensus 489 ~~~l~-~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~ 567 (861)
T 2bpt_A 489 PSPIY-NFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQ 567 (861)
T ss_dssp SCGGG-GGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHH
T ss_pred chhhH-HHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHH
Confidence 1121 2222223444444332111 122334455555555555432222 222222222221 0
Q ss_pred ChhH--HHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHhhCCchH-HHHHHHHHhhcchhHHHHHHhccccccccchHHH
Q 010120 357 SQKE--VMFLGEIEEILEAINMVEFQKVMVSLFWRIGCCINSFHF-QVAERALFLWNNDQIVNLIAHNRQVILPILLPVL 433 (518)
Q Consensus 357 s~KE--v~FL~EleeILe~~~~~ef~~i~~pLF~~ia~ci~S~hf-qVAERAL~lwnNe~~~~li~~n~~~IlPii~p~L 433 (518)
...+ ...+.=|..++..++. ++......++..+...+++.+. .|-+.++..+. .+.......-...+|.++|.|
T Consensus 568 ~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~--~l~~~~~~~~~~~l~~i~~~l 644 (861)
T 2bpt_A 568 SLQELQSNILTVLAAVIRKSPS-SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAIS--ALAASLGKGFEKYLETFSPYL 644 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGG-GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHH--HHHHHHGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHH--HHHHHHhhhHHHHHHHHHHHH
Confidence 0111 2345556666666654 5566666777777777777766 67777776654 233333222222345555555
Q ss_pred HHHhhccchHHHHHHHHHHHHH
Q 010120 434 EKNAQSHWNQAVLNLTLNVRKM 455 (518)
Q Consensus 434 ~~~~~~HWn~~V~~la~~vlki 455 (518)
.+..+ +=+..++..+..++..
T Consensus 645 ~~~l~-~~~~~vr~~a~~~l~~ 665 (861)
T 2bpt_A 645 LKALN-QVDSPVSITAVGFIAD 665 (861)
T ss_dssp HHHHH-CTTSHHHHHHHHHHHH
T ss_pred HHHhc-cccHHHHHHHHHHHHH
Confidence 55432 1123355555555443
No 11
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=90.79 E-value=16 Score=40.32 Aligned_cols=279 Identities=12% Similarity=0.153 Sum_probs=146.2
Q ss_pred hhCCHHHHHHHHhhcCCCChHHHHHHHHHHHHHh---hcccCchhHHHHHHHHHHhhhhhccccccChHHHHHHHHHHHh
Q 010120 216 RYIDHSFILRLLDLFDSDDPRERECLKTILHRVY---GKFMVHRPFIRKSMSNIFYRFVFETEKHNGIAELLEILGSIIS 292 (518)
Q Consensus 216 ~~Id~~Fv~~Ll~lfdSeDpRERd~LKtiLHrIY---~Kf~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIIn 292 (518)
.|+ ...+..|+..++..+.+....+-+.+..|. |+-+....++...+.-++..+-.-.+....+..+++.+++|..
T Consensus 479 ~~l-~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~ 557 (852)
T 4fdd_A 479 PYL-AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVAT 557 (852)
T ss_dssp GGH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHH
T ss_pred hHH-HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 344 346667777777777666655444444443 2223334466655554443322212222334567888888877
Q ss_pred cCCCCChHHHHHHHHH---Hhh------------c-CCCCCchhhhh----hhHHHHHHHHHHhCCC-C--HHHHHHHhh
Q 010120 293 GFALPLKEEHKIFLRR---VII------------P-LHKPKSLGTYF----QQLSYCVMQFIEKEPK-L--SSTVINGLL 349 (518)
Q Consensus 293 GFalPLKeEHk~Fl~r---vLi------------P-LHk~k~~~~yh----~qL~yCv~qfleKDp~-L--~~~vi~glL 349 (518)
........--...+.+ .|- | ....... .+. ..|.. +.+.+..+-. + ...++..++
T Consensus 558 ~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~-~~~~~~l~~l~~-l~~~l~~~~~~~~~~~~~~~~l~ 635 (852)
T 4fdd_A 558 ALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDK-DFMIVALDLLSG-LAEGLGGNIEQLVARSNILTLMY 635 (852)
T ss_dssp HHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCT-HHHHHHHHHHHH-HHHHHGGGGHHHHHTCCHHHHHH
T ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcc-hHHHHHHHHHHH-HHHHHhHhHHHHhcCCcHHHHHH
Confidence 5432222111111111 110 1 0110000 111 22222 2333332211 0 023456666
Q ss_pred ccCCCCCChhHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHhhcchhHHHHHHhccccccccc
Q 010120 350 KYWPITNSQKEVMFLGEIEEILEAINMVEFQKVMVSLFWRIGCCINSFHFQVAERALFLWNNDQIVNLIAHNRQVILPIL 429 (518)
Q Consensus 350 k~WP~tns~KEv~FL~EleeILe~~~~~ef~~i~~pLF~~ia~ci~S~hfqVAERAL~lwnNe~~~~li~~n~~~IlPii 429 (518)
..|.-.++.=.-....-+.++...++ ++|.+.+..+...+.++++...+.|-..| .|---.+...+..+-...++.+
T Consensus 636 ~~l~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~l~~~lp~l~~~l~~~~~~v~~~a--~~alg~i~~~~~~~~~p~~~~i 712 (852)
T 4fdd_A 636 QCMQDKMPEVRQSSFALLGDLTKACF-QHVKPCIADFMPILGTNLNPEFISVCNNA--TWAIGEISIQMGIEMQPYIPMV 712 (852)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHCG-GGTGGGHHHHHHHHHHTCCTTSHHHHHHH--HHHHHHHHHHHGGGGGGGTHHH
T ss_pred HHhCCCChhHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHcCccchHHHHHH--HHHHHHHHHHhhHhHHHHHHHH
Confidence 66654444444456677888887775 68888888888889999988888775544 3444455555544444445667
Q ss_pred hHHHHHHhhc-cchHHHHHHHHHHHHHHHhhCHHHHH----HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCC
Q 010120 430 LPVLEKNAQS-HWNQAVLNLTLNVRKMFSEMDDVLFM----SCHAQYREQVANLSLVDQRRKEAWEQLENAARLQPI 501 (518)
Q Consensus 430 ~p~L~~~~~~-HWn~~V~~la~~vlkil~e~D~~lF~----~~~~~~~~~~~~~~~~~~~r~~~W~~le~~A~~~~~ 501 (518)
++.|.+..++ +-+.+++..+..++--|....|+... ++...+-..-.. .....+++..-+.+-.....+|.
T Consensus 713 l~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~-~~d~~e~~~a~~~l~~li~~~p~ 788 (852)
T 4fdd_A 713 LHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRN-IRDNEEKDSAFRGICTMISVNPS 788 (852)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHT-SCSSHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhcc-ccccHHHHHHHHHHHHHHHhChH
Confidence 7777766543 56788998888888888888887653 333333221111 11122455556666666655554
No 12
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=90.12 E-value=24 Score=38.29 Aligned_cols=91 Identities=11% Similarity=0.075 Sum_probs=48.7
Q ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHHHhhCCch--HHHHHHHHHhhcchhHHHHHHhccccccccchHHHHHHhhccc
Q 010120 364 LGEIEEILEAINMVEFQKVMVSLFWRIGCCINSFH--FQVAERALFLWNNDQIVNLIAHNRQVILPILLPVLEKNAQSHW 441 (518)
Q Consensus 364 L~EleeILe~~~~~ef~~i~~pLF~~ia~ci~S~h--fqVAERAL~lwnNe~~~~li~~n~~~IlPii~p~L~~~~~~HW 441 (518)
+.=+..++..++.++|......++..+..++.+.+ -.|-+.|+..+.+ +.......-...++.++|.|......+=
T Consensus 585 ~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~--l~~~~~~~~~~~~~~~~~~l~~~l~~~~ 662 (876)
T 1qgr_A 585 CATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVST--LVEVLGGEFLKYMEAFKPFLGIGLKNYA 662 (876)
T ss_dssp HHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHH--HHHHHGGGGGGGHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHH--HHHHHHhhHHHHHHHHHHHHHHHHcCcc
Confidence 44556666666657888888888888888888764 2566777765432 2222222222223445555555544332
Q ss_pred hHHHHHHHHHHHHHH
Q 010120 442 NQAVLNLTLNVRKMF 456 (518)
Q Consensus 442 n~~V~~la~~vlkil 456 (518)
+..|+..+..++..+
T Consensus 663 ~~~vr~~a~~~l~~l 677 (876)
T 1qgr_A 663 EYQVCLAAVGLVGDL 677 (876)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 445666665555444
No 13
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=87.75 E-value=22 Score=39.66 Aligned_cols=203 Identities=10% Similarity=0.159 Sum_probs=107.8
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHH---hhcccCchhHHHHHHHHHHhhhhhccccccChHHHHHHHHHHHhcCCCCChH
Q 010120 224 LRLLDLFDSDDPRERECLKTILHRV---YGKFMVHRPFIRKSMSNIFYRFVFETEKHNGIAELLEILGSIISGFALPLKE 300 (518)
Q Consensus 224 ~~Ll~lfdSeDpRERd~LKtiLHrI---Y~Kf~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFalPLKe 300 (518)
.++++.+. .|++.++.+-.+++++ ||.-+ .+|+-..+..++..| .. .+++.+|.+++.|+..|+..
T Consensus 689 ~~~l~~~~-~~~~v~e~~~~~l~~~~~~~~~~~--~~~l~~~~~~l~~~~--~~---~~~~~~l~l~~~li~~f~~~--- 757 (963)
T 2x19_B 689 QKVLSKWL-NDAQVVEAVCAIFEKSVKTLLDDF--APMVPQLCEMLGRMY--ST---IPQASALDLTRQLVHIFAHE--- 757 (963)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHHHHHSSSTT--GGGHHHHHHHHHHHH--HH---SCCHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHhcc-CchHHHHHHHHHHHHHHHhhcccc--cccHHHHHHHHHHHH--Hc---CCccHHHHHHHHHHHHhCCC---
Confidence 34454433 5667777776777774 44322 355555554433333 22 24778999999999965542
Q ss_pred HHHHHHHHHhhcCCCCCchhhhhhhHHHHHHHHHHhCCCCHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhcChHHH-
Q 010120 301 EHKIFLRRVIIPLHKPKSLGTYFQQLSYCVMQFIEKEPKLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINMVEF- 379 (518)
Q Consensus 301 EHk~Fl~rvLiPLHk~k~~~~yh~qL~yCv~qfleKDp~L~~~vi~glLk~WP~tns~KEv~FL~EleeILe~~~~~ef- 379 (518)
+.. .+.+..+...+..|+...+.+|+.-...+. .-|+.-+..++..++..-+
T Consensus 758 -----------~~~-~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~---------------~~~f~ll~~~~~~~~~~~~~ 810 (963)
T 2x19_B 758 -----------PAH-FPPIEALFLLVTSVTLTLFQQGPRDHPDIV---------------DSFMQLLAQALKRKPDLFLC 810 (963)
T ss_dssp -----------TTT-CHHHHHHHHHHHHHHHHHHHHCTTTCHHHH---------------HHHHHHHHHHHHHCGGGGGC
T ss_pred -----------cch-HHHHHHHHHHHHHHHHHHHhhCcccCchHH---------------HHHHHHHHHHHHhCcHHHcC
Confidence 000 112334566677777777766543211111 2234445555544432211
Q ss_pred HHH-HHHHHHHHHHhhCCchHHHHHHHHHhhcc--------hhHHHHHHhccccccccchHHHH-HHhhccchHHHHHHH
Q 010120 380 QKV-MVSLFWRIGCCINSFHFQVAERALFLWNN--------DQIVNLIAHNRQVILPILLPVLE-KNAQSHWNQAVLNLT 449 (518)
Q Consensus 380 ~~i-~~pLF~~ia~ci~S~hfqVAERAL~lwnN--------e~~~~li~~n~~~IlPii~p~L~-~~~~~HWn~~V~~la 449 (518)
... ...++..+..++...|.-|+..|+.+|.+ +.+..++..+-..++..++..+. ...+..|+ ..
T Consensus 811 ~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-----~~ 885 (963)
T 2x19_B 811 ERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQASRSLMD-----CF 885 (963)
T ss_dssp TTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTTSCGGGHH-----HH
T ss_pred CcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcccCChhHHH-----HH
Confidence 122 44577788888999999999999998853 33333444333333333333332 12244453 23
Q ss_pred HHHHHHHHhhCHHHHHHHHH
Q 010120 450 LNVRKMFSEMDDVLFMSCHA 469 (518)
Q Consensus 450 ~~vlkil~e~D~~lF~~~~~ 469 (518)
..++..|...++..+.+...
T Consensus 886 ~~il~~l~~~~~~~~~~~l~ 905 (963)
T 2x19_B 886 ADILFALNKHCFSLLSMWIK 905 (963)
T ss_dssp HHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHHChHHHHHHHH
Confidence 33444455556666665544
No 14
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=85.43 E-value=30 Score=34.13 Aligned_cols=235 Identities=11% Similarity=0.079 Sum_probs=117.3
Q ss_pred hhhhCCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchhHH-HHHHHHHHhhhhhccccccChHHHHHHHHHHHh
Q 010120 214 AKRYIDHSFILRLLDLFDSDDPRERECLKTILHRVYGKFMVHRPFI-RKSMSNIFYRFVFETEKHNGIAELLEILGSIIS 292 (518)
Q Consensus 214 ak~~Id~~Fv~~Ll~lfdSeDpRERd~LKtiLHrIY~Kf~~~R~fI-Rk~Innif~~fiyEte~hnGIaELLeIlgSIIn 292 (518)
.+..++...+-.|+.++.++|+.-|...-..|..|-......|..+ ...+-..+.+++..+....-....+..|+.+..
T Consensus 100 ~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 179 (450)
T 2jdq_A 100 TRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCR 179 (450)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhC
Confidence 4445556688899999999999999999889888776554444443 223344566666432233334456778888876
Q ss_pred cCCCCChHHHHHHHHHHhhcCCCCCchhhhhhhHHHHHHHHHHhC---------CCCHHHHHHHhhccCCCCCChhHHHH
Q 010120 293 GFALPLKEEHKIFLRRVIIPLHKPKSLGTYFQQLSYCVMQFIEKE---------PKLSSTVINGLLKYWPITNSQKEVMF 363 (518)
Q Consensus 293 GFalPLKeEHk~Fl~rvLiPLHk~k~~~~yh~qL~yCv~qfleKD---------p~L~~~vi~glLk~WP~tns~KEv~F 363 (518)
+-....+.....-....|+.+-+...- .-....+.++......+ ..+...++..| + ..+..-...-
T Consensus 180 ~~~~~~~~~~~~~~l~~L~~~l~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~---~~~~~v~~~a 254 (450)
T 2jdq_A 180 GKSPPPEFAKVSPCLNVLSWLLFVSDT-DVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELL-M---HNDYKVVSPA 254 (450)
T ss_dssp CSSSCCCGGGTGGGHHHHHHHTTCCCH-HHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHT-T---CSCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHccCCH-HHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHH-C---CCchhHHHHH
Confidence 541111111111122333333332221 11222333333333222 23444444433 2 1111111112
Q ss_pred HHHHHHHHhhcChHHHHHHH-HHHHHHHHHhhCCchHHHHHHHHHhhcc-----hh-HHHHHHhccccccccchHHHHHH
Q 010120 364 LGEIEEILEAINMVEFQKVM-VSLFWRIGCCINSFHFQVAERALFLWNN-----DQ-IVNLIAHNRQVILPILLPVLEKN 436 (518)
Q Consensus 364 L~EleeILe~~~~~ef~~i~-~pLF~~ia~ci~S~hfqVAERAL~lwnN-----e~-~~~li~~n~~~IlPii~p~L~~~ 436 (518)
+.-|..+... .+...+.+. ..+...|..++.+++..|-+.|+....| +. ...++. ..++|.++..|..
T Consensus 255 ~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~---~~~l~~L~~~l~~- 329 (450)
T 2jdq_A 255 LRAVGNIVTG-DDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVID---ANIFPALISILQT- 329 (450)
T ss_dssp HHHHHHHTTS-CHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH---TTHHHHHHHHHHH-
T ss_pred HHHHHHHhhC-ChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH---CCCHHHHHHHHhc-
Confidence 2222222211 122222222 1366777788888888888888875533 22 222222 2345655555542
Q ss_pred hhccchHHHHHHHHHHHHHHHhh-CHH
Q 010120 437 AQSHWNQAVLNLTLNVRKMFSEM-DDV 462 (518)
Q Consensus 437 ~~~HWn~~V~~la~~vlkil~e~-D~~ 462 (518)
=+..|+..+..++.-+..- +++
T Consensus 330 ----~~~~v~~~a~~~L~~l~~~~~~~ 352 (450)
T 2jdq_A 330 ----AEFRTRKEAAWAITNATSGGSAE 352 (450)
T ss_dssp ----SCHHHHHHHHHHHHHHHHHCCHH
T ss_pred ----CCHHHHHHHHHHHHHHHcCCCHH
Confidence 2566777777777666543 443
No 15
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=82.43 E-value=21 Score=41.21 Aligned_cols=100 Identities=15% Similarity=0.156 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHhhcchhHHHHHHh-------ccccccccch
Q 010120 358 QKEVMFLGEIEEILEAINMVEFQKVMVSLFWRIGCCINSFHFQVAERALFLWNNDQIVNLIAH-------NRQVILPILL 430 (518)
Q Consensus 358 ~KEv~FL~EleeILe~~~~~ef~~i~~pLF~~ia~ci~S~hfqVAERAL~lwnNe~~~~li~~-------n~~~IlPii~ 430 (518)
.-..--+..+..+++...++.|.....++...+..|+...+..|+..|+..+. .++..+.. .-...++.++
T Consensus 492 ~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~--~l~~~~~~~~~~~~~~~~~~~~~ll 569 (1230)
T 1u6g_C 492 NLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQ--QLVKVIRPLDQPSSFDATPYIKDLF 569 (1230)
T ss_dssp HHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHH--HHHHHHCCSSSCCCCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHH--HHHHHhcCcccccccchHHHHHHHH
Confidence 33445677888888888898898888889999999999999999877876553 33333322 1112234556
Q ss_pred HHHHHHhh-ccchHHHHHHHHHHHHHHHhh
Q 010120 431 PVLEKNAQ-SHWNQAVLNLTLNVRKMFSEM 459 (518)
Q Consensus 431 p~L~~~~~-~HWn~~V~~la~~vlkil~e~ 459 (518)
|.|..... ...+..||..+..++..+.+.
T Consensus 570 ~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~ 599 (1230)
T 1u6g_C 570 TCTIKRLKAADIDQEVKERAISCMGQIICN 599 (1230)
T ss_dssp HHHHHHHSCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 66555433 567889999998888888764
No 16
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=78.21 E-value=5.9 Score=35.29 Aligned_cols=84 Identities=13% Similarity=0.126 Sum_probs=63.4
Q ss_pred HHHHHhCCCCHHHHHHHhhccCCCC--CChhHHHHHHHHHHHHhhcC-------hHHHHHHHHHHHHHHHHhhCCchHHH
Q 010120 331 MQFIEKEPKLSSTVINGLLKYWPIT--NSQKEVMFLGEIEEILEAIN-------MVEFQKVMVSLFWRIGCCINSFHFQV 401 (518)
Q Consensus 331 ~qfleKDp~L~~~vi~glLk~WP~t--ns~KEv~FL~EleeILe~~~-------~~ef~~i~~pLF~~ia~ci~S~hfqV 401 (518)
.+++-.+..-+..++..+.++-=.. ++.|.+-+|.-+.+|+...- -..|.+++.++|..+....++.+-+.
T Consensus 26 s~W~l~h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~k~~~~f~~~F~~~L~~~~~~~~~~~~~~~~~k 105 (142)
T 2km4_A 26 SKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQKIIQFQDSFGKVAAEVLGRINQEFPRDLKKK 105 (142)
T ss_dssp HHHHHTCGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHTHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444455555555555555555443 67999999999999996542 25788999999999998888889999
Q ss_pred HHHHHHhhcchhH
Q 010120 402 AERALFLWNNDQI 414 (518)
Q Consensus 402 AERAL~lwnNe~~ 414 (518)
.+|-+.+|..-.+
T Consensus 106 v~rvl~iWeer~v 118 (142)
T 2km4_A 106 LSRVVNILKERNI 118 (142)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHhhccCC
Confidence 9999999976554
No 17
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=74.89 E-value=38 Score=35.00 Aligned_cols=230 Identities=13% Similarity=0.078 Sum_probs=116.7
Q ss_pred hhhhCCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchhHHH-HHHHHHHhhhhhccccccChHHHHHHHHHHHh
Q 010120 214 AKRYIDHSFILRLLDLFDSDDPRERECLKTILHRVYGKFMVHRPFIR-KSMSNIFYRFVFETEKHNGIAELLEILGSIIS 292 (518)
Q Consensus 214 ak~~Id~~Fv~~Ll~lfdSeDpRERd~LKtiLHrIY~Kf~~~R~fIR-k~Innif~~fiyEte~hnGIaELLeIlgSIIn 292 (518)
.+..++...|..|+.++.++|+.=|...-..|..|-+.-...|..+. ..+-..+.+.+.. ....-....+..|+.+..
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHhC
Confidence 33344455677788888899999999999998888765444444432 2233455555543 222223456778888887
Q ss_pred cCCCCChHHHHHHHHHHhhcCCCCCchhhhhhhHHHHHHHHHHhCC---------CCHHHHHHHhhccCCCCCChhHHHH
Q 010120 293 GFALPLKEEHKIFLRRVIIPLHKPKSLGTYFQQLSYCVMQFIEKEP---------KLSSTVINGLLKYWPITNSQKEVMF 363 (518)
Q Consensus 293 GFalPLKeEHk~Fl~rvLiPLHk~k~~~~yh~qL~yCv~qfleKDp---------~L~~~vi~glLk~WP~tns~KEv~F 363 (518)
+-..........-....|+.|-....- ........|+......++ .+...++.. +++ .+..-..--
T Consensus 245 ~~~~~~~~~~~~~~l~~L~~lL~~~d~-~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~l-L~~---~~~~v~~~a 319 (530)
T 1wa5_B 245 GKKPQPDWSVVSQALPTLAKLIYSMDT-ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVEL-LSH---ESTLVQTPA 319 (530)
T ss_dssp CSSSCCCHHHHGGGHHHHHHHTTCCCH-HHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHG-GGC---SCHHHHHHH
T ss_pred CCCCCCcHHHHHhHHHHHHHHHcCCCH-HHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHH-HCC---CChhhHHHH
Confidence 653333333333344556665554332 223334445544443332 334444433 332 111111111
Q ss_pred HHHHHHHHhhcChHHHHHHH-HHHHHHHHHhhCCchHHHHHHHHHhhcc------hhHHHHHHhccccccccchHHHHHH
Q 010120 364 LGEIEEILEAINMVEFQKVM-VSLFWRIGCCINSFHFQVAERALFLWNN------DQIVNLIAHNRQVILPILLPVLEKN 436 (518)
Q Consensus 364 L~EleeILe~~~~~ef~~i~-~pLF~~ia~ci~S~hfqVAERAL~lwnN------e~~~~li~~n~~~IlPii~p~L~~~ 436 (518)
+.-|..+... .+...+.+. ..+...|..++.+++..|-+.|+....| +.+..++. ..++|.++..|.
T Consensus 320 ~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~---~~~l~~L~~lL~-- 393 (530)
T 1wa5_B 320 LRAVGNIVTG-NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVID---ANLIPPLVKLLE-- 393 (530)
T ss_dssp HHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH---TTCHHHHHHHHH--
T ss_pred HHHHHHHHcC-CHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH---CCCHHHHHHHHh--
Confidence 2222222211 122222222 2466677788889898998888875544 12222221 234455555443
Q ss_pred hhccchHHHHHHHHHHHHHHHh
Q 010120 437 AQSHWNQAVLNLTLNVRKMFSE 458 (518)
Q Consensus 437 ~~~HWn~~V~~la~~vlkil~e 458 (518)
+-+..|+..+..++.-+..
T Consensus 394 ---~~~~~v~~~a~~aL~~l~~ 412 (530)
T 1wa5_B 394 ---VAEYKTKKEACWAISNASS 412 (530)
T ss_dssp ---HSCHHHHHHHHHHHHHHHH
T ss_pred ---cCCHHHHHHHHHHHHHHHh
Confidence 2255666666666655543
No 18
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=74.69 E-value=34 Score=36.46 Aligned_cols=175 Identities=11% Similarity=0.088 Sum_probs=112.1
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHhhhhhccccccChHHHHHHHHHHHhcCCCCChH
Q 010120 221 SFILRLLDLFDSDDPRERECLKTILHRVYGKFMVHRPFIRKSMSNIFYRFVFETEKHNGIAELLEILGSIISGFALPLKE 300 (518)
Q Consensus 221 ~Fv~~Ll~lfdSeDpRERd~LKtiLHrIY~Kf~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFalPLKe 300 (518)
..+..|++.+.+.|+.-|..+-.-++++-.||...-.|+- +.+.+++-.. .-.-..|.+..++.|+.++.- +++
T Consensus 353 ~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v----~~Ll~ll~~~-~~~v~~e~i~~l~~ii~~~p~-~~~ 426 (591)
T 2vgl_B 353 QVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCV----STLLDLIQTK-VNYVVQEAIVVIRDIFRKYPN-KYE 426 (591)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHHHTC-CHHHHHHHHHHHHHHHHHSCS-SCC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHHHH----HHHHHHHccc-chHHHHHHHHHHHHHHHHCcc-hHH
Confidence 3567788888888998888888888888878753322322 3455554322 222356778888888887542 322
Q ss_pred HHHHHHHHHhhcCCCCCchhhhhhhHHHHHHHHHHhCCCCHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhcChHHHH
Q 010120 301 EHKIFLRRVIIPLHKPKSLGTYFQQLSYCVMQFIEKEPKLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINMVEFQ 380 (518)
Q Consensus 301 EHk~Fl~rvLiPLHk~k~~~~yh~qL~yCv~qfleKDp~L~~~vi~glLk~WP~tns~KEv~FL~EleeILe~~~~~ef~ 380 (518)
.-...|...|-.+. ...-.....+|+-+|.+.-+. ...+++.+++-+...++.=+...|.-+-.+....+.. .+
T Consensus 427 ~~v~~L~~~l~~~~----~~~~~~~~~wilGey~~~~~~-~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~-~~ 500 (591)
T 2vgl_B 427 SIIATLCENLDSLD----EPDARAAMIWIVGEYAERIDN-ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSE-TQ 500 (591)
T ss_dssp TTHHHHHHTTTTCC----SHHHHHHHHHHHHTTCTTCTT-HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCST-TH
T ss_pred HHHHHHHHHHHhcc----CHHHHHHHHHHHHcccccccC-HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchH-HH
Confidence 22233333332221 122356677888888766554 6789999999888777776777888888887766532 23
Q ss_pred HHHHHHHHHHHHhh-CCchHHHHHHHHHhhc
Q 010120 381 KVMVSLFWRIGCCI-NSFHFQVAERALFLWN 410 (518)
Q Consensus 381 ~i~~pLF~~ia~ci-~S~hfqVAERAL~lwn 410 (518)
.....+++ +|. +|.+..|=+||..+|.
T Consensus 501 ~~i~~ll~---~~~~d~~d~evrdRA~~y~~ 528 (591)
T 2vgl_B 501 ELVQQVLS---LATQDSDNPDLRDRGYIYWR 528 (591)
T ss_dssp HHHHHHHH---HHHTTCCCHHHHHHHHHHHT
T ss_pred HHHHHHHH---HhhhcCCChHHHHHHHHHHH
Confidence 33334444 454 5789999999998774
No 19
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=72.49 E-value=51 Score=33.85 Aligned_cols=235 Identities=12% Similarity=0.039 Sum_probs=114.9
Q ss_pred hhHhhhhCCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchhHHHH-HHHHHHhhhhhccccccChHHHHHHHHH
Q 010120 211 AKVAKRYIDHSFILRLLDLFDSDDPRERECLKTILHRVYGKFMVHRPFIRK-SMSNIFYRFVFETEKHNGIAELLEILGS 289 (518)
Q Consensus 211 ~~~ak~~Id~~Fv~~Ll~lfdSeDpRERd~LKtiLHrIY~Kf~~~R~fIRk-~Innif~~fiyEte~hnGIaELLeIlgS 289 (518)
+...+..++...|-.|+.++.++|+.=|...-..|..|-+.-...|..+.. .+-..+.+.+..+....-.......|+.
T Consensus 150 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~ 229 (528)
T 4b8j_A 150 SENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSN 229 (528)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 334444555567888999999999999999999998887654444554433 2223455555333333445566778888
Q ss_pred HHhcCCCCChHHHHHHHHHHhhcCCCCCchhhhhhhHHHHHHHHHHhCC---------CCHHHHHHHhhccCCCCCChhH
Q 010120 290 IISGFALPLKEEHKIFLRRVIIPLHKPKSLGTYFQQLSYCVMQFIEKEP---------KLSSTVINGLLKYWPITNSQKE 360 (518)
Q Consensus 290 IInGFalPLKeEHk~Fl~rvLiPLHk~k~~~~yh~qL~yCv~qfleKDp---------~L~~~vi~glLk~WP~tns~KE 360 (518)
+..+...+- .....-....|+.|-....-. .......|+......++ .....++..| +. .+..=.
T Consensus 230 L~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~-v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL-~~---~~~~v~ 303 (528)
T 4b8j_A 230 FCRGKPQPS-FEQTRPALPALARLIHSNDEE-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-LH---PSPSVL 303 (528)
T ss_dssp HHCSSSCCC-HHHHTTHHHHHHHHTTCCCHH-HHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHT-TC---SCHHHH
T ss_pred HHcCCCCCc-HHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHH-cC---CChhHH
Confidence 887763332 222223344555554443221 12223333333322221 2333333332 21 111101
Q ss_pred HHHHHHHHHHHhhcChHHHHHHH-HHHHHHHHHhhCCc-hHHHHHHHHHhhcc-----hhHHHHHHhccccccccchHHH
Q 010120 361 VMFLGEIEEILEAINMVEFQKVM-VSLFWRIGCCINSF-HFQVAERALFLWNN-----DQIVNLIAHNRQVILPILLPVL 433 (518)
Q Consensus 361 v~FL~EleeILe~~~~~ef~~i~-~pLF~~ia~ci~S~-hfqVAERAL~lwnN-----e~~~~li~~n~~~IlPii~p~L 433 (518)
.--+.-|..+.. -.+...+.+. ..+...|..++.+. +..|.+.|+....| +.....+.+ ..+ +|.|
T Consensus 304 ~~a~~~L~nl~~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~--~~~----i~~L 376 (528)
T 4b8j_A 304 IPALRTVGNIVT-GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVIN--AGI----IGPL 376 (528)
T ss_dssp HHHHHHHHHHTT-SCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHH--TTC----HHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHH--CCC----HHHH
Confidence 111112222211 1223333222 22455666677777 88888888764433 222111111 123 3444
Q ss_pred HHHhhccchHHHHHHHHHHHHHHHhh
Q 010120 434 EKNAQSHWNQAVLNLTLNVRKMFSEM 459 (518)
Q Consensus 434 ~~~~~~HWn~~V~~la~~vlkil~e~ 459 (518)
.+..... +..++..|..++.-+..-
T Consensus 377 ~~lL~~~-~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 377 VNLLQTA-EFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHHHS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CHHHHHHHHHHHHHHHcC
Confidence 4433332 666776666666655544
No 20
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=72.45 E-value=76 Score=31.12 Aligned_cols=240 Identities=11% Similarity=0.088 Sum_probs=110.9
Q ss_pred hhHHHHHHHHHHHHhhccCChhHhh-------h---hCC--------HHH-HHHHHhhcCCCChHHHHHHHHHHHHHhhc
Q 010120 191 PHLQIVYDLLLKFITSSCLDAKVAK-------R---YID--------HSF-ILRLLDLFDSDDPRERECLKTILHRVYGK 251 (518)
Q Consensus 191 pHLqlVYe~llrfv~s~~~d~~~ak-------~---~Id--------~~F-v~~Ll~lfdSeDpRERd~LKtiLHrIY~K 251 (518)
+|+.-+...|+..+.+++-++.+.+ . ++. ..+ +.-|.++..++|+.-|...-.+|..+..+
T Consensus 168 ~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~ 247 (462)
T 1ibr_B 168 DKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSL 247 (462)
T ss_dssp GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 5667777888888776532221111 0 111 133 33455577889999998888888777765
Q ss_pred ccC-chhHHH-HHHHHHHhhhhhccccccChHHHHHHHHHHHhcCC-----------------CCChHHHHHHHHHHhhc
Q 010120 252 FMV-HRPFIR-KSMSNIFYRFVFETEKHNGIAELLEILGSIISGFA-----------------LPLKEEHKIFLRRVIIP 312 (518)
Q Consensus 252 f~~-~R~fIR-k~Innif~~fiyEte~hnGIaELLeIlgSIInGFa-----------------lPLKeEHk~Fl~rvLiP 312 (518)
+.. .++++. ..+. .+...+. ++...-....+++++.+...-. .++..--+.++ ..++|
T Consensus 248 ~~~~~~~~~~~~l~~-~~~~~~~-~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~p 324 (462)
T 1ibr_B 248 YYQYMETYMGPALFA-ITIEAMK-SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVP 324 (462)
T ss_dssp CGGGCTTTTTTTHHH-HHHHHHH-CSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHc-CCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh-hhccH
Confidence 543 234444 3332 2222221 1111123445777777664310 11111111111 22222
Q ss_pred C----CCCC------chhhhhhhHHHHHHHHHHhCCC-CHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhcChHHHHH
Q 010120 313 L----HKPK------SLGTYFQQLSYCVMQFIEKEPK-LSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINMVEFQK 381 (518)
Q Consensus 313 L----Hk~k------~~~~yh~qL~yCv~qfleKDp~-L~~~vi~glLk~WP~tns~KEv~FL~EleeILe~~~~~ef~~ 381 (518)
. -... .-......-..|+....+.-+. ....++..+..+---.+...-..-+.=|..+.+.+.++.+..
T Consensus 325 ~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~ 404 (462)
T 1ibr_B 325 ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP 404 (462)
T ss_dssp HHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 1 1100 0001122233344444443332 222233322222111222222233444555555555455555
Q ss_pred HHHHHHHHHHHhhCCchHHHHHHHHHhhcchhHHHHHHhcc--ccccccchHHHHH
Q 010120 382 VMVSLFWRIGCCINSFHFQVAERALFLWNNDQIVNLIAHNR--QVILPILLPVLEK 435 (518)
Q Consensus 382 i~~pLF~~ia~ci~S~hfqVAERAL~lwnNe~~~~li~~n~--~~IlPii~p~L~~ 435 (518)
.+..++..+..++.++|..|-.+|+.... .+...+.... ..-++.++|.|.+
T Consensus 405 ~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~--~~~~~~~~~~~~~~~l~~ll~~Ll~ 458 (462)
T 1ibr_B 405 LVIQAMPTLIELMKDPSVVVRDTAAWTVG--RICELLPEAAINDVYLAPLLQCLIE 458 (462)
T ss_dssp TTTTHHHHHHHGGGCSCHHHHHHHHHHHH--HHHHHGGGGCCSTTTHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHH--HHHHhcccccccHHHHHHHHHHHHH
Confidence 55667888888999999988888776543 3444443321 2334555565553
No 21
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=70.81 E-value=29 Score=34.32 Aligned_cols=105 Identities=10% Similarity=0.078 Sum_probs=68.8
Q ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHhhcchhHHHHHHhccccc----cccchHHHHHHhhc
Q 010120 364 LGEIEEILEAINMVEFQKVMVSLFWRIGCCINSFHFQVAERALFLWNNDQIVNLIAHNRQVI----LPILLPVLEKNAQS 439 (518)
Q Consensus 364 L~EleeILe~~~~~ef~~i~~pLF~~ia~ci~S~hfqVAERAL~lwnNe~~~~li~~n~~~I----lPii~p~L~~~~~~ 439 (518)
++.|.+.++. .+++......-+|+-++-=+.+.|++|+.++|.+.. .++..+.+....+ ..+++|.|..-. +
T Consensus 67 le~L~~~l~~-~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~--~l~~~l~~~~y~~~~~ea~~~lP~LveKl-G 142 (266)
T 2of3_A 67 LDSLVRLADT-SPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCK--VIVELIRDTETPMSQEEVSAFVPYLLLKT-G 142 (266)
T ss_dssp HHHHHHHHHH-CHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHH--HHHHHHHHTTCCCCHHHHHHHHHHHHHGG-G
T ss_pred HHHHHHHhhh-ChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHHh-C
Confidence 3333344443 355555556667887665555779999999999875 4544444422112 356777766542 6
Q ss_pred cchHHHHHHHHHHHHHHHhh-CHH-HHHHHHHHHH
Q 010120 440 HWNQAVLNLTLNVRKMFSEM-DDV-LFMSCHAQYR 472 (518)
Q Consensus 440 HWn~~V~~la~~vlkil~e~-D~~-lF~~~~~~~~ 472 (518)
|=++.||+.+..+++.+.++ .|. +|+.+.+..+
T Consensus 143 d~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~k 177 (266)
T 2of3_A 143 EAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALK 177 (266)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGG
T ss_pred CChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHc
Confidence 66899999999999999985 444 7777766543
No 22
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=68.89 E-value=1.7e+02 Score=33.65 Aligned_cols=52 Identities=12% Similarity=0.193 Sum_probs=31.3
Q ss_pred hhhCCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcccC-chhHHHHHHHHHH
Q 010120 215 KRYIDHSFILRLLDLFDSDDPRERECLKTILHRVYGKFMV-HRPFIRKSMSNIF 267 (518)
Q Consensus 215 k~~Id~~Fv~~Ll~lfdSeDpRERd~LKtiLHrIY~Kf~~-~R~fIRk~Innif 267 (518)
+.+++. .+.-++..+.+++++.|...-..|.++-..+.. ..+++...+..++
T Consensus 429 ~~~l~~-ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~ 481 (1230)
T 1u6g_C 429 QSQVPN-IVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGII 481 (1230)
T ss_dssp HHHTTH-HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHH
T ss_pred HHHhhH-HHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHH
Confidence 445543 445566668999999998877777776654322 1234544444333
No 23
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=66.98 E-value=46 Score=37.49 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=41.0
Q ss_pred hhhhCCHHHHHHHHhhcCCCC-----hHHHHHHHHHHHHHhhcc-cCchhHHHHHHHH---HHhhhhhccccccChHHHH
Q 010120 214 AKRYIDHSFILRLLDLFDSDD-----PRERECLKTILHRVYGKF-MVHRPFIRKSMSN---IFYRFVFETEKHNGIAELL 284 (518)
Q Consensus 214 ak~~Id~~Fv~~Ll~lfdSeD-----pRERd~LKtiLHrIY~Kf-~~~R~fIRk~Inn---if~~fiyEte~hnGIaELL 284 (518)
...|++ ..+.+|+.+++... ..|.+++-..|.++-..+ -...+|+-..+.. ++.+..-+.+...=...++
T Consensus 542 l~p~l~-~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~ 620 (960)
T 1wa5_C 542 ISNSTE-ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTF 620 (960)
T ss_dssp TTTTHH-HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred hhhhHH-HHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 444553 35677777777641 226677777776664422 1122444444433 2322211111111124589
Q ss_pred HHHHHHHhc
Q 010120 285 EILGSIISG 293 (518)
Q Consensus 285 eIlgSIInG 293 (518)
|.+|+|+..
T Consensus 621 e~l~~l~~~ 629 (960)
T 1wa5_C 621 ESIGAILNY 629 (960)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999999987
No 24
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=65.63 E-value=9.2 Score=33.18 Aligned_cols=84 Identities=15% Similarity=0.252 Sum_probs=64.6
Q ss_pred HHHHHHHhCCCCHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhcC------hHHHHHHHHHHHHHHHHhhCCchHHHH
Q 010120 329 CVMQFIEKEPKLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAIN------MVEFQKVMVSLFWRIGCCINSFHFQVA 402 (518)
Q Consensus 329 Cv~qfleKDp~L~~~vi~glLk~WP~tns~KEv~FL~EleeILe~~~------~~ef~~i~~pLF~~ia~ci~S~hfqVA 402 (518)
=+.+|+-.+.+-+..++..+.++--.+.+.+.+-+|.-+.+|+-... -..|.+++.++|..+.+.....+-+..
T Consensus 25 ~~s~w~l~~~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~~~~y~~~f~~~l~~~~~~~~~~~~~~~k~kl 104 (135)
T 4fu3_A 25 TLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPL 104 (135)
T ss_dssp HHHHHHHHTGGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTTCSHHHHHHHTTHHHHHHHHHHHHHTTSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34455555666666666666666667777889999999999996542 246888899999999888888888888
Q ss_pred HHHHHhhcch
Q 010120 403 ERALFLWNND 412 (518)
Q Consensus 403 ERAL~lwnNe 412 (518)
.|-+.+|..-
T Consensus 105 ~kll~iW~~r 114 (135)
T 4fu3_A 105 ERLLNIWQER 114 (135)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHhcCC
Confidence 9999999853
No 25
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=65.55 E-value=1.2e+02 Score=31.01 Aligned_cols=159 Identities=12% Similarity=0.057 Sum_probs=106.0
Q ss_pred cccChHHHHHHHHHHHhcCCCCChHHHHHHHH--HHhhcCCCCCchhhhhhhHHHHHHHHHHhCCCCHHHHHHHhhccCC
Q 010120 276 KHNGIAELLEILGSIISGFALPLKEEHKIFLR--RVIIPLHKPKSLGTYFQQLSYCVMQFIEKEPKLSSTVINGLLKYWP 353 (518)
Q Consensus 276 ~hnGIaELLeIlgSIInGFalPLKeEHk~Fl~--rvLiPLHk~k~~~~yh~qL~yCv~qfleKDp~L~~~vi~glLk~WP 353 (518)
.+.|-.|..+++..+++-|+.+-.+.-|.-+. ..+.+. ++.+-.++.-+.||-.=..+.+||+-
T Consensus 59 ~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~----------~~e~iLv~Nsl~kDl~~~N~~iR~lA---- 124 (355)
T 3tjz_B 59 EHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI----------AEDVIIVTSSLTKDMTGKEDSYRGPA---- 124 (355)
T ss_dssp CCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT----------SSCGGGGHHHHHHHHHSSCHHHHHHH----
T ss_pred CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHhhcCCCcHhHHHHH----
Confidence 56788899999999999999998876554443 333333 23334677788888777778888875
Q ss_pred CCCChhHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHhhcchhHHHHHHhccccccccchHHH
Q 010120 354 ITNSQKEVMFLGEIEEILEAINMVEFQKVMVSLFWRIGCCINSFHFQVAERALFLWNNDQIVNLIAHNRQVILPILLPVL 433 (518)
Q Consensus 354 ~tns~KEv~FL~EleeILe~~~~~ef~~i~~pLF~~ia~ci~S~hfqVAERAL~lwnNe~~~~li~~n~~~IlPii~p~L 433 (518)
|--+-....++- ..++..-+-+|+.+.|--|.-.|+.- ...|+..+.+.+ --.++.+
T Consensus 125 -------------LRtL~~I~~~~m----~~~l~~~lk~~L~d~~pyVRk~A~l~-----~~kL~~~~pe~v-~~~~~~l 181 (355)
T 3tjz_B 125 -------------VRALCQITDSTM----LQAIERYMKQAIVDKVPSVSSSALVS-----SLHLLKCSFDVV-KRWVNEA 181 (355)
T ss_dssp -------------HHHHHHHCCTTT----HHHHHHHHHHHHTCSSHHHHHHHHHH-----HHHHTTTCHHHH-HTTHHHH
T ss_pred -------------HHHHhcCCCHHH----HHHHHHHHHHHcCCCCHHHHHHHHHH-----HHHHhccCHHHH-HHHHHHH
Confidence 222223344443 34567778889999999999999875 224444444433 2345555
Q ss_pred HHHhhccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 010120 434 EKNAQSHWNQAVLNLTLNVRKMFSEMDDVLFMSCHAQYR 472 (518)
Q Consensus 434 ~~~~~~HWn~~V~~la~~vlkil~e~D~~lF~~~~~~~~ 472 (518)
.+... -=|..|+-.|..++.-+.+.|+..+.++..++.
T Consensus 182 ~~ll~-d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~ 219 (355)
T 3tjz_B 182 QEAAS-SDNIMVQYHALGLLYHVRKNDRLAVSKMISKFT 219 (355)
T ss_dssp HHHTT-CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhc-CCCccHHHHHHHHHHHHHhhchHHHHHHHHHHh
Confidence 44432 236777777778888888888887777766554
No 26
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=63.11 E-value=2e+02 Score=32.35 Aligned_cols=33 Identities=15% Similarity=0.355 Sum_probs=26.8
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcc
Q 010120 220 HSFILRLLDLFDSDDPRERECLKTILHRVYGKF 252 (518)
Q Consensus 220 ~~Fv~~Ll~lfdSeDpRERd~LKtiLHrIY~Kf 252 (518)
+.++..|+.++.|.|+..+...-.+||.|..++
T Consensus 122 p~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~ 154 (960)
T 1wa5_C 122 PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRW 154 (960)
T ss_dssp TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGG
T ss_pred hHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 347788888999999888888888888887765
No 27
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=61.21 E-value=1.1e+02 Score=34.83 Aligned_cols=34 Identities=9% Similarity=0.128 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHhhCCchHHHHHHHHHhhcc
Q 010120 378 EFQKVMVSLFWRIGCCINSFHFQVAERALFLWNN 411 (518)
Q Consensus 378 ef~~i~~pLF~~ia~ci~S~hfqVAERAL~lwnN 411 (518)
++...+..++..+-+|...++-.|+..|+.+|..
T Consensus 337 ~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~ 370 (1049)
T 3m1i_C 337 SLRELLLNAHQYLIQLSKIEERELFKTTLDYWHN 370 (1049)
T ss_dssp GGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 3555566788888888888899999999999964
No 28
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=59.86 E-value=95 Score=27.60 Aligned_cols=80 Identities=15% Similarity=0.092 Sum_probs=50.9
Q ss_pred hHhhhhCCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchhHH-HHHHHHHHhhhhhccccccChHHHHHHHHHH
Q 010120 212 KVAKRYIDHSFILRLLDLFDSDDPRERECLKTILHRVYGKFMVHRPFI-RKSMSNIFYRFVFETEKHNGIAELLEILGSI 290 (518)
Q Consensus 212 ~~ak~~Id~~Fv~~Ll~lfdSeDpRERd~LKtiLHrIY~Kf~~~R~fI-Rk~Innif~~fiyEte~hnGIaELLeIlgSI 290 (518)
...+..++...|..|+.++.++|+.-|...-..|..+-..-...|..+ ...+-..+.+++.. ....-....+..|+.+
T Consensus 35 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l 113 (252)
T 4hxt_A 35 SAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANI 113 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHH
Confidence 445556666789999999999999999998888877766534444433 22233455565543 2222234446666666
Q ss_pred Hh
Q 010120 291 IS 292 (518)
Q Consensus 291 In 292 (518)
..
T Consensus 114 ~~ 115 (252)
T 4hxt_A 114 AS 115 (252)
T ss_dssp TT
T ss_pred Hc
Confidence 54
No 29
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=59.19 E-value=1.4e+02 Score=29.27 Aligned_cols=260 Identities=13% Similarity=0.102 Sum_probs=125.7
Q ss_pred CCCCCCCChhHHHHHHHHHHHHhhccCChh---------H--------hhhhCCH-HHHHHHHhhcCCC-ChHHHHHHHH
Q 010120 183 EPMFDPSWPHLQIVYDLLLKFITSSCLDAK---------V--------AKRYIDH-SFILRLLDLFDSD-DPRERECLKT 243 (518)
Q Consensus 183 ep~~e~sWpHLqlVYe~llrfv~s~~~d~~---------~--------ak~~Id~-~Fv~~Ll~lfdSe-DpRERd~LKt 243 (518)
+...+..||=..++...|.+.+.+++.+.+ + .+..+.. ..+..|++++.++ |+.-|...-.
T Consensus 8 ~~~~~~~w~~~~~~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~ 87 (450)
T 2jdq_A 8 AQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAW 87 (450)
T ss_dssp --------------CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred hhhhHHhhccccccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHH
Confidence 345666777554444445555544432210 1 1223333 6788899999998 8888988888
Q ss_pred HHHHHhhcccCc-hhHHHHHHHHHHhhhhhccccccChHHHHHHHHHHHhcCCCCChHHHHHHH-----HHHhhcCCCCC
Q 010120 244 ILHRVYGKFMVH-RPFIRKSMSNIFYRFVFETEKHNGIAELLEILGSIISGFALPLKEEHKIFL-----RRVIIPLHKPK 317 (518)
Q Consensus 244 iLHrIY~Kf~~~-R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFalPLKeEHk~Fl-----~rvLiPLHk~k 317 (518)
+|..+...-... +.++...+-..+.+++... ...--...+..|+.|..+. ++.+..+ ...|+.+-+..
T Consensus 88 ~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~vr~~a~~~L~~l~~~~-----~~~~~~~~~~~~i~~L~~~l~~~ 161 (450)
T 2jdq_A 88 VLTNIASGNSLQTRIVIQAGAVPIFIELLSSE-FEDVQEQAVWALGNIAGDS-----TMCRDYVLDCNILPPLLQLFSKQ 161 (450)
T ss_dssp HHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTC-----HHHHHHHHHTTCHHHHHHHTTSC
T ss_pred HHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHccCC-----HHHHHHHHHCCCHHHHHHHhcCC
Confidence 888887632222 2233333444555555332 2222334577788877653 2233322 33455554432
Q ss_pred chhhhhhhHHHHHHHHHHhC-CCC-------HHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhc---ChHHHHHHH-HH
Q 010120 318 SLGTYFQQLSYCVMQFIEKE-PKL-------SSTVINGLLKYWPITNSQKEVMFLGEIEEILEAI---NMVEFQKVM-VS 385 (518)
Q Consensus 318 ~~~~yh~qL~yCv~qfleKD-p~L-------~~~vi~glLk~WP~tns~KEv~FL~EleeILe~~---~~~ef~~i~-~p 385 (518)
.-.....+-+.|+..+...+ |.. +-+.+-.+++ +...++ ....-..|..+ .++....+. ..
T Consensus 162 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~-----~~~~~v--~~~a~~~L~~l~~~~~~~~~~~~~~~ 234 (450)
T 2jdq_A 162 NRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF-----VSDTDV--LADACWALSYLSDGPNDKIQAVIDAG 234 (450)
T ss_dssp CCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTT-----CCCHHH--HHHHHHHHHHHTSSSHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHc-----cCCHHH--HHHHHHHHHHHHCCCcHHHHHHHHcC
Confidence 23344666777777777544 432 1222222332 111222 22222223222 122222221 23
Q ss_pred HHHHHHHhhCCchHHHHHHHHHhhcc-----hhHHHHHHhccccccccchHHHHHHhhccchHHHHHHHHHHHHHHHhhC
Q 010120 386 LFWRIGCCINSFHFQVAERALFLWNN-----DQIVNLIAHNRQVILPILLPVLEKNAQSHWNQAVLNLTLNVRKMFSEMD 460 (518)
Q Consensus 386 LF~~ia~ci~S~hfqVAERAL~lwnN-----e~~~~li~~n~~~IlPii~p~L~~~~~~HWn~~V~~la~~vlkil~e~D 460 (518)
++..|..++.+.+..|.+.|+....| +.....+.+ .-++|.|.+... |-+..++..+..++.-+..-+
T Consensus 235 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~------~~~l~~L~~ll~-~~~~~vr~~a~~~L~~l~~~~ 307 (450)
T 2jdq_A 235 VCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILN------CSALQSLLHLLS-SPKESIKKEACWTISNITAGN 307 (450)
T ss_dssp THHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT------TTHHHHHHHHTT-CSSHHHHHHHHHHHHHHTTSC
T ss_pred cHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHH------CccHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCC
Confidence 66677778888888888888764432 222221111 124455555443 337788888888888777655
Q ss_pred HH
Q 010120 461 DV 462 (518)
Q Consensus 461 ~~ 462 (518)
+.
T Consensus 308 ~~ 309 (450)
T 2jdq_A 308 RA 309 (450)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 30
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=54.91 E-value=52 Score=31.25 Aligned_cols=98 Identities=9% Similarity=0.073 Sum_probs=60.0
Q ss_pred HHHHHhhcChHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHhhcchhHHHHHHhccc------ccc-ccchHHHHHHhhc
Q 010120 367 IEEILEAINMVEFQKVMVSLFWRIGCCINSFHFQVAERALFLWNNDQIVNLIAHNRQ------VIL-PILLPVLEKNAQS 439 (518)
Q Consensus 367 leeILe~~~~~ef~~i~~pLF~~ia~ci~S~hfqVAERAL~lwnNe~~~~li~~n~~------~Il-Pii~p~L~~~~~~ 439 (518)
+..+++.++|.........++..|..++.+.+.||=+.|+.+.. .++..... ..+ |.++|.|.+.. +
T Consensus 128 l~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~-----~~~~~~~~~~~~l~~~l~~~iip~l~~~l-~ 201 (249)
T 2qk1_A 128 LLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFN-----ASMKEEKDGYSTLQRYLKDEVVPIVIQIV-N 201 (249)
T ss_dssp HHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHH-----HHHHHCCSCSHHHHHHHTTTHHHHHHHHH-T
T ss_pred HHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHH-----HHHHHcCCcchhHHHHHHHHHHHHHHHHh-c
Confidence 56666767552211113346666667888889999998887543 22333221 135 77778777765 3
Q ss_pred cchHHHHHHHHHHHHHHHhh-CHHHHHHHHHH
Q 010120 440 HWNQAVLNLTLNVRKMFSEM-DDVLFMSCHAQ 470 (518)
Q Consensus 440 HWn~~V~~la~~vlkil~e~-D~~lF~~~~~~ 470 (518)
+=+..||..|..++..++.. ..+-|......
T Consensus 202 D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~ 233 (249)
T 2qk1_A 202 DTQPAIRTIGFESFAILIKIFGMNTFVKTLEH 233 (249)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 44888999999988887643 33334444443
No 31
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=51.57 E-value=2.5e+02 Score=29.98 Aligned_cols=164 Identities=16% Similarity=0.135 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCCCCCchhhhhhhHHHHHHHHHHhCCCCHHHHHHHhhccCCCCCC---
Q 010120 281 AELLEILGSIISGFALPLKEEHKIFLRRVIIPLHKPKSLGTYFQQLSYCVMQFIEKEPKLSSTVINGLLKYWPITNS--- 357 (518)
Q Consensus 281 aELLeIlgSIInGFalPLKeEHk~Fl~rvLiPLHk~k~~~~yh~qL~yCv~qfleKDp~L~~~vi~glLk~WP~tns--- 357 (518)
.++...+|.+..-|+ |-.+.+...|.+.| +... ..+-.+...++.+.++++|.+-..++..|..+......
T Consensus 403 ~~~v~~I~~la~k~~-~~~~~~v~~ll~lL----~~~~-~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~ 476 (618)
T 1w63_A 403 ADCASGIFLAAEKYA-PSKRWHIDTIMRVL----TTAG-SYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQP 476 (618)
T ss_dssp HHHHHHHHHHHHSSC-CCHHHHHHHHHHHH----HHTG-GGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSH
T ss_pred HHHHHHHHHHHHHhC-ccHHHHHHHHHHHH----Hhcc-chhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHH
Confidence 345666666766665 55555544444332 2222 23455688899999999999999888888877653211
Q ss_pred --hhHHHHHHHHHHHHhh----------cChHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHhhcchhHHHHHHhccccc
Q 010120 358 --QKEVMFLGEIEEILEA----------INMVEFQKVMVSLFWRIGCCINSFHFQVAERALFLWNNDQIVNLIAHNRQVI 425 (518)
Q Consensus 358 --~KEv~FL~EleeILe~----------~~~~ef~~i~~pLF~~ia~ci~S~hfqVAERAL~lwnNe~~~~li~~n~~~I 425 (518)
..=+..|+|..+.+.. +.|...-.+...+.+.. ..+++. |+..++. ++.+..... ..
T Consensus 477 ~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~v----r~~~lta---~~Kl~~~~~-~~ 545 (618)
T 1w63_A 477 LVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISN---MSTSVT----RGYALTA---IMKLSTRFT-CT 545 (618)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHST---TCCHHH----HHHHHHH---HHHHHTTCS-SC
T ss_pred HHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhcc---CCCHHH----HHHHHHH---HHHHHHhCc-ch
Confidence 1223467777766642 23333333222222111 123332 2222221 111122221 12
Q ss_pred cccchHHHHHHhhccchHHHHHHHHHHHHHHHhhCHHH
Q 010120 426 LPILLPVLEKNAQSHWNQAVLNLTLNVRKMFSEMDDVL 463 (518)
Q Consensus 426 lPii~p~L~~~~~~HWn~~V~~la~~vlkil~e~D~~l 463 (518)
-+.+..-|.+. .++-|..||..|...+++|.. ++.+
T Consensus 546 ~~~l~~~L~~~-~~~~d~evrdRA~~y~~ll~~-~~~~ 581 (618)
T 1w63_A 546 VNRIKKVVSIY-GSSIDVELQQRAVEYNALFKK-YDHM 581 (618)
T ss_dssp HHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHHT-TTTH
T ss_pred HHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHcC-cHHH
Confidence 34444444444 577899999999999999876 5543
No 32
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=51.35 E-value=77 Score=27.79 Aligned_cols=73 Identities=15% Similarity=0.117 Sum_probs=39.5
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchhHH-HHHHHHHHhhhhhccccccChHHHHHHHHHHHhc
Q 010120 220 HSFILRLLDLFDSDDPRERECLKTILHRVYGKFMVHRPFI-RKSMSNIFYRFVFETEKHNGIAELLEILGSIISG 293 (518)
Q Consensus 220 ~~Fv~~Ll~lfdSeDpRERd~LKtiLHrIY~Kf~~~R~fI-Rk~Innif~~fiyEte~hnGIaELLeIlgSIInG 293 (518)
..+...|..++.|+|+.-|...-..|..+-..-...|..+ ....-..+.+++... ...-....+..|+.+..|
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~ 84 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASG 84 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTS
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcC
Confidence 3345567778889999888887777776653332333222 222333455555332 222234456677776644
No 33
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=49.34 E-value=1.7e+02 Score=31.34 Aligned_cols=174 Identities=11% Similarity=0.087 Sum_probs=92.9
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHhhhhhccccccChHHHHHHHHHHHhcCCCCChHHH
Q 010120 223 ILRLLDLFDSDDPRERECLKTILHRVYGKFMVHRPFIRKSMSNIFYRFVFETEKHNGIAELLEILGSIISGFALPLKEEH 302 (518)
Q Consensus 223 v~~Ll~lfdSeDpRERd~LKtiLHrIY~Kf~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFalPLKeEH 302 (518)
+..|++.+.+.|+.=|..+-..++++-.||...-.|.-. .+.+++-... ..-..|++..+..|+... .-+++.-
T Consensus 387 v~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~----~ll~lL~~~~-~~v~~~~~~~l~~ii~~~-p~l~~~~ 460 (618)
T 1w63_A 387 MKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHID----TIMRVLTTAG-SYVRDDAVPNLIQLITNS-VEMHAYT 460 (618)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHH----HHHHHHHHTG-GGSCSSHHHHHHHHHHHS-CSTHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHH----HHHHHHHhcc-chhHHHHHHHHHHHHhcC-hhHHHHH
Confidence 444555555566666666666666666666443322221 2223332222 122345556666666542 2333333
Q ss_pred HHHHHHHhhcCCCCCchhhhhhhHHHHHHHHHHh--------------CCCCHHHHHHHhhccCCCCCChhHHHHHHHHH
Q 010120 303 KIFLRRVIIPLHKPKSLGTYFQQLSYCVMQFIEK--------------EPKLSSTVINGLLKYWPITNSQKEVMFLGEIE 368 (518)
Q Consensus 303 k~Fl~rvLiPLHk~k~~~~yh~qL~yCv~qfleK--------------Dp~L~~~vi~glLk~WP~tns~KEv~FL~Ele 368 (518)
..-+...|---.... ....-.++|+-.|.+. +|+.+..+++.+++.+ ..++.-+...|.=+-
T Consensus 461 v~~L~~~l~~~~~~~---~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~vr~~~lta~~ 536 (618)
T 1w63_A 461 VQRLYKAILGDYSQQ---PLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISN-MSTSVTRGYALTAIM 536 (618)
T ss_dssp HHHHHHHHHHCCSCS---HHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccH---HHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHH
Confidence 333333332101111 1234578888888753 3345666777777665 344555556666666
Q ss_pred HHHhhcChHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHhhcc
Q 010120 369 EILEAINMVEFQKVMVSLFWRIGCCINSFHFQVAERALFLWNN 411 (518)
Q Consensus 369 eILe~~~~~ef~~i~~pLF~~ia~ci~S~hfqVAERAL~lwnN 411 (518)
.+.-..+.. ... +-+.+.+|..|.+..|=+||..+|+-
T Consensus 537 Kl~~~~~~~--~~~---l~~~L~~~~~~~d~evrdRA~~y~~l 574 (618)
T 1w63_A 537 KLSTRFTCT--VNR---IKKVVSIYGSSIDVELQQRAVEYNAL 574 (618)
T ss_dssp HHHTTCSSC--HHH---HHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHhCcch--HHH---HHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 666555422 333 33445668899999999999998863
No 34
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=47.48 E-value=38 Score=30.21 Aligned_cols=90 Identities=9% Similarity=0.144 Sum_probs=72.4
Q ss_pred hhhHHHHHHHHHHhCCCCHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhcCh---HHHHHHHHHHHHHHHHhhCCchH
Q 010120 323 FQQLSYCVMQFIEKEPKLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINM---VEFQKVMVSLFWRIGCCINSFHF 399 (518)
Q Consensus 323 h~qL~yCv~qfleKDp~L~~~vi~glLk~WP~tns~KEv~FL~EleeILe~~~~---~ef~~i~~pLF~~ia~ci~S~hf 399 (518)
.++...-++.++..+..-+..++..+.+|=-++++.+.+-+|.-+..|+-.+.. ..|.+.+.++|...-.++....-
T Consensus 23 Sk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r 102 (144)
T 1sz9_A 23 SRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTR 102 (144)
T ss_dssp CHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 455555667788888888888888888887789999999999999999987754 57888888999988888766666
Q ss_pred HHHHHHHHhhcch
Q 010120 400 QVAERALFLWNND 412 (518)
Q Consensus 400 qVAERAL~lwnNe 412 (518)
+--.|-+.+|...
T Consensus 103 ~k~~rL~~~W~~~ 115 (144)
T 1sz9_A 103 TKLINMFKLWLNP 115 (144)
T ss_dssp HHHHHHHHHHTSG
T ss_pred HHHHHHHHHHhCc
Confidence 6777888899854
No 35
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=44.12 E-value=2.4e+02 Score=27.57 Aligned_cols=99 Identities=8% Similarity=0.010 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHhhccCChhHhhhhCCHHHHHHHHh-hcCCCChHHHHHHHHHHHHHhhcccCchhHHHH-HHHHHHhh
Q 010120 192 HLQIVYDLLLKFITSSCLDAKVAKRYIDHSFILRLLD-LFDSDDPRERECLKTILHRVYGKFMVHRPFIRK-SMSNIFYR 269 (518)
Q Consensus 192 HLqlVYe~llrfv~s~~~d~~~ak~~Id~~Fv~~Ll~-lfdSeDpRERd~LKtiLHrIY~Kf~~~R~fIRk-~Innif~~ 269 (518)
|....-+.|..++++.+ .+..++...=+..|+. ++.|+|+.=|...-.+|-.|-+.-...|..+.+ ..-..+.+
T Consensus 56 ~k~~Al~~L~~lv~~~d----na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~ 131 (296)
T 1xqr_A 56 EREGALELLADLCENMD----NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHHTSHH----HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhChh----hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence 44556677788887543 3444444445677899 999999999999888887776654444443322 12234444
Q ss_pred hhhccccccChHHHHHHHHHHHhcC
Q 010120 270 FVFETEKHNGIAELLEILGSIISGF 294 (518)
Q Consensus 270 fiyEte~hnGIaELLeIlgSIInGF 294 (518)
.+..+....-....+..|++|+.|+
T Consensus 132 LL~~~~~~~v~~~A~~ALsnl~~~~ 156 (296)
T 1xqr_A 132 LLDRDACDTVRVKALFAISCLVREQ 156 (296)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHccCCCHHHHHHHHHHHHHHHcCC
Confidence 4432222233445566666666664
No 36
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=42.44 E-value=2.9e+02 Score=28.08 Aligned_cols=223 Identities=16% Similarity=0.060 Sum_probs=114.2
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhhcc--cCchhHHHHHHHHHHhhhhhccccccChHHHHHHHHHHHhcCCCCChH
Q 010120 223 ILRLLDLFDSDDPRERECLKTILHRVYGKF--MVHRPFIRKSMSNIFYRFVFETEKHNGIAELLEILGSIISGFALPLKE 300 (518)
Q Consensus 223 v~~Ll~lfdSeDpRERd~LKtiLHrIY~Kf--~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFalPLKe 300 (518)
|-.|+..+.|+|+..|..--..|.++-... ...+.++...+-..+.+++...+...--.+.+..|+.|..|- .
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-----~ 150 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-----S 150 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-----H
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-----H
Confidence 445677778888888887777777764433 233344444455566666643321222345677888887753 3
Q ss_pred HHHHHH-----HHHhhcCCCCCchhhhhhhHHHHHHHHHHhCCC---------CHHHHHHHhhccCCCCCChhHHHHHHH
Q 010120 301 EHKIFL-----RRVIIPLHKPKSLGTYFQQLSYCVMQFIEKEPK---------LSSTVINGLLKYWPITNSQKEVMFLGE 366 (518)
Q Consensus 301 EHk~Fl-----~rvLiPLHk~k~~~~yh~qL~yCv~qfleKDp~---------L~~~vi~glLk~WP~tns~KEv~FL~E 366 (518)
+++..+ ...|+.|-+.... ....+-+.++......++. ....++..|... .+..=...-+.-
T Consensus 151 ~~~~~~~~~g~i~~L~~lL~~~~~-~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~---~~~~v~~~a~~~ 226 (528)
T 4b8j_A 151 ENTKVVIDHGAVPIFVKLLGSSSD-DVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH---TKLSMLRNATWT 226 (528)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCH-HHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT---CCHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHhcCCCH-HHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC---CCHHHHHHHHHH
Confidence 444433 3345555554332 3345555666555554443 333333333221 111111111222
Q ss_pred HHHHHhhcChHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHhhcc------hhHHHHHHhccccccccchHHHHHHhhcc
Q 010120 367 IEEILEAINMVEFQKVMVSLFWRIGCCINSFHFQVAERALFLWNN------DQIVNLIAHNRQVILPILLPVLEKNAQSH 440 (518)
Q Consensus 367 leeILe~~~~~ef~~i~~pLF~~ia~ci~S~hfqVAERAL~lwnN------e~~~~li~~n~~~IlPii~p~L~~~~~~H 440 (518)
|..+...-+...+ .+...+...|.+.+.+.+-.|.+.|+..+.| +.+..++. .-++|.|.+....
T Consensus 227 L~~L~~~~~~~~~-~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~-------~g~v~~Lv~lL~~- 297 (528)
T 4b8j_A 227 LSNFCRGKPQPSF-EQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIE-------AGVCPRLVELLLH- 297 (528)
T ss_dssp HHHHHCSSSCCCH-HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHH-------TTCHHHHHHHTTC-
T ss_pred HHHHHcCCCCCcH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-------cCHHHHHHHHHcC-
Confidence 2233222122222 2335667777778888888888888765432 11111111 1244444444332
Q ss_pred chHHHHHHHHHHHHHHHhhCHHH
Q 010120 441 WNQAVLNLTLNVRKMFSEMDDVL 463 (518)
Q Consensus 441 Wn~~V~~la~~vlkil~e~D~~l 463 (518)
=+..|+..+..++.-+..-++..
T Consensus 298 ~~~~v~~~a~~~L~nl~~~~~~~ 320 (528)
T 4b8j_A 298 PSPSVLIPALRTVGNIVTGDDAQ 320 (528)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHH
T ss_pred CChhHHHHHHHHHHHHHcCCHHH
Confidence 26788888888887777655543
No 37
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=41.66 E-value=4.1e+02 Score=29.56 Aligned_cols=235 Identities=7% Similarity=-0.027 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCC--CChHHHHHHHHHHHHHhhcc--cCchhHHHHHHHHHHhhhhhccccc-------cChHHHHHHHH
Q 010120 220 HSFILRLLDLFDS--DDPRERECLKTILHRVYGKF--MVHRPFIRKSMSNIFYRFVFETEKH-------NGIAELLEILG 288 (518)
Q Consensus 220 ~~Fv~~Ll~lfdS--eDpRERd~LKtiLHrIY~Kf--~~~R~fIRk~Innif~~fiyEte~h-------nGIaELLeIlg 288 (518)
..++..|+.++++ -|.+++..+-+.+-+|.... -..-+++.+-+..++-++---.... .-+.+.|+.|+
T Consensus 583 ~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~ 662 (971)
T 2x1g_F 583 DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMIS 662 (971)
T ss_dssp HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Q ss_pred HHHhcCCCCChHHHHHHHHHHhhcCCCCCchhhhhhhHHHHHHHHHHhCCC-------------------------CHHH
Q 010120 289 SIISGFALPLKEEHKIFLRRVIIPLHKPKSLGTYFQQLSYCVMQFIEKEPK-------------------------LSST 343 (518)
Q Consensus 289 SIInGFalPLKeEHk~Fl~rvLiPLHk~k~~~~yh~qL~yCv~qfleKDp~-------------------------L~~~ 343 (518)
.++.+......+..+.-+ .+..+..|.+++...+.+.++..+. +...
T Consensus 663 ~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~ 734 (971)
T 2x1g_F 663 TLFSSLNTDVDEQATDQP--------IVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQD 734 (971)
T ss_dssp HHHHHHTC---------------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHH
T ss_pred HHHhhcCCCcCccccccc--------CCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHH
Q ss_pred HHHHhhccCCCCCChhHHHHHHHHHHHHhhcCh---------HHHHHHHHHHHHHHHHh---hCCchHHHHHHHHHhhcc
Q 010120 344 VINGLLKYWPITNSQKEVMFLGEIEEILEAINM---------VEFQKVMVSLFWRIGCC---INSFHFQVAERALFLWNN 411 (518)
Q Consensus 344 vi~glLk~WP~tns~KEv~FL~EleeILe~~~~---------~ef~~i~~pLF~~ia~c---i~S~hfqVAERAL~lwnN 411 (518)
++..|+.-.-.+.. ..||+-+..++..... +-+..+...+|..+..| ....+-.|++..+.+
T Consensus 735 ~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~l--- 808 (971)
T 2x1g_F 735 LCLFIVASFQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGC--- 808 (971)
T ss_dssp HHHHHHHHCC--CC---HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHH---
T ss_pred HHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHH---
Q ss_pred hhHHHHHHhccccc------cccchHHHHHHhhccchHHHHHHHHHHHHHHHhh--CHHHHHHHHHHH
Q 010120 412 DQIVNLIAHNRQVI------LPILLPVLEKNAQSHWNQAVLNLTLNVRKMFSEM--DDVLFMSCHAQY 471 (518)
Q Consensus 412 e~~~~li~~n~~~I------lPii~p~L~~~~~~HWn~~V~~la~~vlkil~e~--D~~lF~~~~~~~ 471 (518)
+..++..+...+ ++.+++....+.+ |=+..+...+.+.+..+..+ +...+++....+
T Consensus 809 --l~~~l~~~p~~~~~s~~~l~~i~~~~~~~l~-~~~~~~~~s~~~fl~~~i~~~~~~~~~~~~~~~~ 873 (971)
T 2x1g_F 809 --LTQIIKKIPQVLEDKTLAYDRLVFYAQRGMT-LPESGAIRNSIQFLTHFVMQSRNHAHVTEVVLAT 873 (971)
T ss_dssp --HHHHHHSSGGGGGCTTSCHHHHHHHHHHHHT-SSCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHhCcHHHcCCcccHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHh
No 38
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=40.41 E-value=2.2e+02 Score=32.35 Aligned_cols=175 Identities=14% Similarity=0.135 Sum_probs=84.0
Q ss_pred CHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHhhhhhccccccChHHHHHHHHHHHhcCCCCC
Q 010120 219 DHSFILRLLDLFDSDDPRERECLKTILHRVYGKFMVHRPFIRKSMSNIFYRFVFETEKHNGIAELLEILGSIISGFALPL 298 (518)
Q Consensus 219 d~~Fv~~Ll~lfdSeDpRERd~LKtiLHrIY~Kf~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFalPL 298 (518)
|-.=+.++|..+.++|+.+|......|..+...= + +.... ..++.+=-...-++.| +-+|-..|+..--.|
T Consensus 14 ~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~p-~---~~~~l-~~iL~~s~~~~vr~~a----a~~Lk~~i~~~W~~l 84 (1049)
T 3m1i_C 14 DIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNP-D---AWQKA-DQILQFSTNPQSKFIA----LSILDKLITRKWKLL 84 (1049)
T ss_dssp CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHST-T---GGGGH-HHHHHHCSCHHHHHHH----HHHHHHHHHHTGGGS
T ss_pred cHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhCc-h---HHHHH-HHHHhhCCCHHHHHHH----HHHHHHHHHhhCccC
Confidence 4444566666666777777776666665553311 1 00000 0111100000001111 222233333322346
Q ss_pred hHHHHHHHHHHhhcCCCCCc--------hhhhhhhHHHHHHHHHHh-----CCCCHHHHHHHhhccCCCCCC-hhH--HH
Q 010120 299 KEEHKIFLRRVIIPLHKPKS--------LGTYFQQLSYCVMQFIEK-----EPKLSSTVINGLLKYWPITNS-QKE--VM 362 (518)
Q Consensus 299 KeEHk~Fl~rvLiPLHk~k~--------~~~yh~qL~yCv~qfleK-----Dp~L~~~vi~glLk~WP~tns-~KE--v~ 362 (518)
.+|.+..+...|+.+-.... -...-.+|+.|+...... -|++...++..+ - ++. .+| ..
T Consensus 85 ~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~----~-~~~~~~~~~l~ 159 (1049)
T 3m1i_C 85 PNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSS----S-SSVNVCENNMI 159 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHH----T-TCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHH----c-cChHHHHHHHH
Confidence 68888888888877654321 134567888888877665 344444444332 1 222 234 23
Q ss_pred HHHHHHHHHhhcCh------------HHHHHHHHHHHHHHHHhhCC-chHHHHHHHHH
Q 010120 363 FLGEIEEILEAINM------------VEFQKVMVSLFWRIGCCINS-FHFQVAERALF 407 (518)
Q Consensus 363 FL~EleeILe~~~~------------~ef~~i~~pLF~~ia~ci~S-~hfqVAERAL~ 407 (518)
+|.-+-|.+..... +.+..-...+|..+..|+.+ .+-.|...||.
T Consensus 160 ~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~ 217 (1049)
T 3m1i_C 160 VLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLE 217 (1049)
T ss_dssp HHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 33333322221211 33555566677777777754 34566666665
No 39
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=39.61 E-value=4.3e+02 Score=29.20 Aligned_cols=93 Identities=18% Similarity=0.249 Sum_probs=56.0
Q ss_pred ChhHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHhhcchhHHHHHHhccccccccchHHHHHH
Q 010120 357 SQKEVMFLGEIEEILEAINMVEFQKVMVSLFWRIGCCINSFHFQVAERALFLWNNDQIVNLIAHNRQVILPILLPVLEKN 436 (518)
Q Consensus 357 s~KEv~FL~EleeILe~~~~~ef~~i~~pLF~~ia~ci~S~hfqVAERAL~lwnNe~~~~li~~n~~~IlPii~p~L~~~ 436 (518)
..+|.. +.-+.-|.+.+...+ ...+..++..+. .+.++|-.|..+|+.+.. ++...+.++. ..+|.+++.|...
T Consensus 464 ~~~eaa-l~al~~i~~~~~~~~-~~~l~~l~~~l~-~l~~~~~~vr~~~~~~l~--~~~~~l~~~~-~~l~~vl~~l~~~ 537 (963)
T 2x19_B 464 QHTEAL-LYGFQSIAETIDVNY-SDVVPGLIGLIP-RISISNVQLADTVMFTIG--ALSEWLADHP-VMINSVLPLVLHA 537 (963)
T ss_dssp HHHHHH-HHHHHHHTTSCCSSC-CSHHHHHHHHGG-GSCCCSHHHHHHHHHHHH--HTHHHHHHCH-HHHTTTHHHHHHH
T ss_pred HHHHHH-HHHHHHHHhhcCchh-hHHHHHHHHHHH-hCCCCcHHHHHHHHHHHH--HHHHHHHhCH-HHHHHHHHHHHHH
Confidence 346665 666777777765422 233444555443 345568888888887553 3444454443 3456777777766
Q ss_pred hhccchHHHHHHHHHHHHHHHh
Q 010120 437 AQSHWNQAVLNLTLNVRKMFSE 458 (518)
Q Consensus 437 ~~~HWn~~V~~la~~vlkil~e 458 (518)
..+ +.|+..|..++.-|.+
T Consensus 538 l~~---~~V~~~A~~al~~l~~ 556 (963)
T 2x19_B 538 LGN---PELSVSSVSTLKKICR 556 (963)
T ss_dssp TTC---GGGHHHHHHHHHHHHH
T ss_pred hCC---chHHHHHHHHHHHHHH
Confidence 533 6777777777776654
No 40
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=39.50 E-value=3.1e+02 Score=27.64 Aligned_cols=68 Identities=10% Similarity=0.022 Sum_probs=41.5
Q ss_pred HHHHHHHhhCCchHHHHHHHHHhhcchhHHHHHHhcc-ccccccchHHHHHHhhccchHHHHHHHHHHHHHHHhh
Q 010120 386 LFWRIGCCINSFHFQVAERALFLWNNDQIVNLIAHNR-QVILPILLPVLEKNAQSHWNQAVLNLTLNVRKMFSEM 459 (518)
Q Consensus 386 LF~~ia~ci~S~hfqVAERAL~lwnNe~~~~li~~n~-~~IlPii~p~L~~~~~~HWn~~V~~la~~vlkil~e~ 459 (518)
+...+...+.+++..|-+.|+..+. .+..... ....+-++|.|....... +..||..|..++..+.+.
T Consensus 165 l~~~l~~l~~d~~~~VR~~a~~~l~-----~l~~~~~~~~~~~~l~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~ 233 (588)
T 1b3u_A 165 LRQYFRNLCSDDTPMVRRAAASKLG-----EFAKVLELDNVKSEIIPMFSNLASDE-QDSVRLLAVEACVNIAQL 233 (588)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHH-----HHHHTSCHHHHHHTHHHHHHHHHTCS-CHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHH-----HHHHHhcHHhHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHh
Confidence 4444444556777777777776553 2333322 234567778777765443 677888877777766654
No 41
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=38.26 E-value=3.8e+02 Score=28.24 Aligned_cols=22 Identities=18% Similarity=0.066 Sum_probs=14.5
Q ss_pred HHhCCCCHHHHHHHhhccCCCC
Q 010120 334 IEKEPKLSSTVINGLLKYWPIT 355 (518)
Q Consensus 334 leKDp~L~~~vi~glLk~WP~t 355 (518)
-+.||.+-..+++.+-+|.|..
T Consensus 212 ~~~~~~~q~~il~~l~~l~~~~ 233 (591)
T 2vgl_B 212 NECTEWGQIFILDCLSNYNPKD 233 (591)
T ss_dssp HHCCHHHHHHHHHHHHTSCCCS
T ss_pred CCCCchHHHHHHHHHHHhCCCC
Confidence 3456666667777777777653
No 42
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=38.26 E-value=32 Score=26.33 Aligned_cols=46 Identities=24% Similarity=0.408 Sum_probs=37.8
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHhhcCCCCCchhhhhhhHHHHHHH
Q 010120 285 EILGSIISGFALPLKEEHKIFLRRVIIPLHKPKSLGTYFQQLSYCVMQ 332 (518)
Q Consensus 285 eIlgSIInGFalPLKeEHk~Fl~rvLiPLHk~k~~~~yh~qL~yCv~q 332 (518)
+++.|||+.= -|.++||.++...|=-.-..+.++.|||-|...+..
T Consensus 5 sViRSvikSS--~l~~~hK~~ml~LL~dikg~~dL~eF~qMl~~I~~~ 50 (56)
T 1oks_A 5 SVIRSIIKSS--RLEEDRKRYLMTLLDDIKGANDLAKFHQMLVKIIMK 50 (56)
T ss_dssp HHHHHHHHHS--CSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--ccchHHHHHHHHHHHHccccchHHHHHHHHHHHHHH
Confidence 4567777753 478999999999999999999999999988777653
No 43
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=37.60 E-value=4.1e+02 Score=28.49 Aligned_cols=85 Identities=9% Similarity=0.117 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHhhcCCCCCchhhhhhhHHHHHHHHHHhCCCCHHHHHHHhhccCCCCCChhHH-
Q 010120 283 LLEILGSIISGFALPLKEEHKIFLRRVIIPLHKPKSLGTYFQQLSYCVMQFIEKEPKLSSTVINGLLKYWPITNSQKEV- 361 (518)
Q Consensus 283 LLeIlgSIInGFalPLKeEHk~Fl~rvLiPLHk~k~~~~yh~qL~yCv~qfleKDp~L~~~vi~glLk~WP~tns~KEv- 361 (518)
+..-+|.+...|+ |-.+-+..+|.+.| ... -+.+-+.....+.+.+.++|.+-..++..|+.+-......--+
T Consensus 424 ~v~~I~~la~k~~-~~~~~~v~~Ll~ll----~~~-~~~v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~~~~~~~~li 497 (621)
T 2vgl_A 424 IVLKVAILAEKYA-VDYTWYVDTILNLI----RIA-GDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPACHENLV 497 (621)
T ss_dssp HHHHHHHHHHHHC-SSTHHHHHHHHHHH----HHH-GGGSCSHHHHHHHHHHGGGCSCHHHHHHHHHHHHTSSSCCHHHH
T ss_pred HHHHHHHHHHhcC-CcHHHHHHHHHHHH----Hhh-cccchHHHHHHHHHHHhCChhHHHHHHHHHHHHHcCccchHHHH
Confidence 3333444444443 33344444444433 211 1224566777888888899998888887777665543333222
Q ss_pred ----HHHHHHHHHHhh
Q 010120 362 ----MFLGEIEEILEA 373 (518)
Q Consensus 362 ----~FL~EleeILe~ 373 (518)
..|+|-.+.++.
T Consensus 498 ~~~~wilGEy~~~~~~ 513 (621)
T 2vgl_A 498 KVGGYILGEFGNLIAG 513 (621)
T ss_dssp HHHHHHHHHHTHHHHS
T ss_pred HHHHHHhcchHHHhcc
Confidence 467888777765
No 44
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=37.21 E-value=45 Score=38.45 Aligned_cols=161 Identities=11% Similarity=0.125 Sum_probs=85.0
Q ss_pred HHHHHHHHhcCCCCChHH----HHHHHHHHhhcCCCC----CchhhhhhhHHHHHHHHHHhC-CCCHHHHHHHhhccCCC
Q 010120 284 LEILGSIISGFALPLKEE----HKIFLRRVIIPLHKP----KSLGTYFQQLSYCVMQFIEKE-PKLSSTVINGLLKYWPI 354 (518)
Q Consensus 284 LeIlgSIInGFalPLKeE----Hk~Fl~rvLiPLHk~----k~~~~yh~qL~yCv~qfleKD-p~L~~~vi~glLk~WP~ 354 (518)
+.+|-..|+ .|-+| .+..+...|+.+... ..-...-.+|+.+++.++..+ |.-=...+..|+.-|-.
T Consensus 64 ~~~L~~~I~----~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~ 139 (980)
T 3ibv_A 64 LQTLSEKVR----EWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAA 139 (980)
T ss_dssp HHHHHHHHH----HCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHH----hCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcC
Confidence 344455555 34456 677777766666442 112234578888888887665 22222233333333322
Q ss_pred CCC-hhHHHHHHHHHHHHhhc----------------------ChHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHh---
Q 010120 355 TNS-QKEVMFLGEIEEILEAI----------------------NMVEFQKVMVSLFWRIGCCINSFHFQVAERALFL--- 408 (518)
Q Consensus 355 tns-~KEv~FL~EleeILe~~----------------------~~~ef~~i~~pLF~~ia~ci~S~hfqVAERAL~l--- 408 (518)
.+. .--.+||.-+..|-|-+ ...++..+....+..+..|..+.+-.+++.+|..
T Consensus 140 ~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s 219 (980)
T 3ibv_A 140 SSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQ 219 (980)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 232 22234555555222221 1112555567778888888887788888888772
Q ss_pred hcchhHHHHHHhccccccccchHHHHHHhhccchHHHHHHHHHHHHHHH
Q 010120 409 WNNDQIVNLIAHNRQVILPILLPVLEKNAQSHWNQAVLNLTLNVRKMFS 457 (518)
Q Consensus 409 wnNe~~~~li~~n~~~IlPii~p~L~~~~~~HWn~~V~~la~~vlkil~ 457 (518)
|-+---.+++.. ..+++.+|..|. +..++..|..++..+.
T Consensus 220 ~i~wi~~~~i~~--~~ll~~l~~~L~-------~~~~r~~A~ecL~ei~ 259 (980)
T 3ibv_A 220 WVSWININLIVN--EPCMNLLYSFLQ-------IEELRCAACETMTEIV 259 (980)
T ss_dssp HTTTSCHHHHHC--HHHHHHHHHHTT-------SHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHhhhc--chHHHHHHHHcC-------ChHHHHHHHHHHHHHH
Confidence 332212333432 344455554443 2567777777665543
No 45
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=36.41 E-value=54 Score=28.18 Aligned_cols=82 Identities=10% Similarity=0.232 Sum_probs=55.8
Q ss_pred HHHHHHhCCCCHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhcC---hHHHHHHHHHHHHHHHHhh-CCchHHHHHHH
Q 010120 330 VMQFIEKEPKLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAIN---MVEFQKVMVSLFWRIGCCI-NSFHFQVAERA 405 (518)
Q Consensus 330 v~qfleKDp~L~~~vi~glLk~WP~tns~KEv~FL~EleeILe~~~---~~ef~~i~~pLF~~ia~ci-~S~hfqVAERA 405 (518)
+.+++-.+.+-+..++..+.++=-.+.+.+.+-+|.-+.+|+.... ..+|.+...+.+..+...+ ...+-+-..|-
T Consensus 27 ~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~~~f~~~l~~~~~~~~~~~~~~kl~~l 106 (132)
T 4flb_A 27 LSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEAAALVKDPSVSKSVERI 106 (132)
T ss_dssp HHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHHHHHHTTHHHHHHTTCSTTTHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3455555666677777777777677888899999999999997652 3345554444444443333 44566777889
Q ss_pred HHhhcc
Q 010120 406 LFLWNN 411 (518)
Q Consensus 406 L~lwnN 411 (518)
+.+|..
T Consensus 107 l~iW~~ 112 (132)
T 4flb_A 107 FKIWED 112 (132)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 999985
No 46
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=35.50 E-value=2.3e+02 Score=24.95 Aligned_cols=217 Identities=14% Similarity=0.081 Sum_probs=108.5
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchhH-HHHHHHHHHhhhhhccccccChHHHHHHHHHHHhcCCCCChHH
Q 010120 223 ILRLLDLFDSDDPRERECLKTILHRVYGKFMVHRPF-IRKSMSNIFYRFVFETEKHNGIAELLEILGSIISGFALPLKEE 301 (518)
Q Consensus 223 v~~Ll~lfdSeDpRERd~LKtiLHrIY~Kf~~~R~f-IRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFalPLKeE 301 (518)
|..|+.++.++|+..|...-..|..+-......|.. +...+-..+.+++...+ ..-....+.+|+.+..+- ++
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~-----~~ 77 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGP-----DE 77 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSC-----HH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCC-----hH
Confidence 556888899999888888888887776554433333 33334445556554322 222334456666655431 33
Q ss_pred HHHHH-----HHHhhcCCCCCchhhhhhhHHHHHHHHHHhCCCC---------HHHHHHHhhccCCCCCChhHHHHHHHH
Q 010120 302 HKIFL-----RRVIIPLHKPKSLGTYFQQLSYCVMQFIEKEPKL---------SSTVINGLLKYWPITNSQKEVMFLGEI 367 (518)
Q Consensus 302 Hk~Fl-----~rvLiPLHk~k~~~~yh~qL~yCv~qfleKDp~L---------~~~vi~glLk~WP~tns~KEv~FL~El 367 (518)
.+..+ ...|+.+-+... ......-..++......++.. ...+++ +++ ..+ .++ ....
T Consensus 78 ~~~~~~~~~~i~~l~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-~l~---~~~--~~~--~~~a 148 (252)
T 4hxt_A 78 AIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVK-LLT---STD--SEV--QKEA 148 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH-HTT---CSC--HHH--HHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH-HHc---CCC--HHH--HHHH
Confidence 33322 334444444332 222344444444444333322 222222 222 111 111 1222
Q ss_pred HHHHhhc---ChHHHHHH-HHHHHHHHHHhhCCchHHHHHHHHHhhc-----chhHHHHHHhccccccccchHHHHHHhh
Q 010120 368 EEILEAI---NMVEFQKV-MVSLFWRIGCCINSFHFQVAERALFLWN-----NDQIVNLIAHNRQVILPILLPVLEKNAQ 438 (518)
Q Consensus 368 eeILe~~---~~~ef~~i-~~pLF~~ia~ci~S~hfqVAERAL~lwn-----Ne~~~~li~~n~~~IlPii~p~L~~~~~ 438 (518)
-..|..+ .+...+.+ .......|..++.+.+..|.+.|+.... ++.....+.+ .-+++.|.+..+
T Consensus 149 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~------~~~i~~L~~ll~ 222 (252)
T 4hxt_A 149 ARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVD------AGGVEVLQKLLT 222 (252)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHH------TTHHHHHHHGGG
T ss_pred HHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH------CCCHHHHHHHHC
Confidence 2222222 12221111 1235667777888888888888887543 2333222222 124455555543
Q ss_pred ccchHHHHHHHHHHHHHHHhhCH
Q 010120 439 SHWNQAVLNLTLNVRKMFSEMDD 461 (518)
Q Consensus 439 ~HWn~~V~~la~~vlkil~e~D~ 461 (518)
+=+..++..|..++.-+...++
T Consensus 223 -~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 223 -STDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp -CSCHHHHHHHHHHHHHHHHTCB
T ss_pred -CCcHHHHHHHHHHHHHHHcCCC
Confidence 3477888888888888776553
No 47
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=33.05 E-value=2.7e+02 Score=24.90 Aligned_cols=72 Identities=15% Similarity=0.101 Sum_probs=42.2
Q ss_pred HHHHHhhCCchHHHHHHHHHhhc-----chhHHHHHHhccccccccchHHHHHHhhccchHHHHHHHHHHHHHHHhhCHH
Q 010120 388 WRIGCCINSFHFQVAERALFLWN-----NDQIVNLIAHNRQVILPILLPVLEKNAQSHWNQAVLNLTLNVRKMFSEMDDV 462 (518)
Q Consensus 388 ~~ia~ci~S~hfqVAERAL~lwn-----Ne~~~~li~~n~~~IlPii~p~L~~~~~~HWn~~V~~la~~vlkil~e~D~~ 462 (518)
..|.+++.+.+..|.+.|+.... ++.....+.+ .-++|.|.+..+.. +..|+..+..+|.-+..-++.
T Consensus 141 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~------~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~ 213 (252)
T 4db8_A 141 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID------AGALPALVQLLSSP-NEQILQEALWALSNIASGGNE 213 (252)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH------TTCHHHHHHGGGCS-SHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHH------CCCHHHHHHHHCCC-CHHHHHHHHHHHHHHhcCCHH
Confidence 44555566667777776665332 2222222221 23455666554443 889999999999988876765
Q ss_pred HHHH
Q 010120 463 LFMS 466 (518)
Q Consensus 463 lF~~ 466 (518)
....
T Consensus 214 ~~~~ 217 (252)
T 4db8_A 214 QKQA 217 (252)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 48
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=31.67 E-value=4.3e+02 Score=26.90 Aligned_cols=225 Identities=11% Similarity=0.029 Sum_probs=99.9
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhhcc--cCchhHHHHHHHHHHhhhhhccccccChHHHHHHHHHHHhcCCCCChH
Q 010120 223 ILRLLDLFDSDDPRERECLKTILHRVYGKF--MVHRPFIRKSMSNIFYRFVFETEKHNGIAELLEILGSIISGFALPLKE 300 (518)
Q Consensus 223 v~~Ll~lfdSeDpRERd~LKtiLHrIY~Kf--~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFalPLKe 300 (518)
+..|+..+.|+|+..|..--..|.++..+. ...+..+...+-..+.+++.......-..+.+.+|+.|..|. .
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-----~ 163 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-----S 163 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-----H
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-----H
Confidence 445666667777777766666666664432 122233333334455555533212222344566666666542 2
Q ss_pred HHHHHHH-----HHhhcCCCCCchhhhhhhHHHHHHHHHHhCC---------CCHHHHHHHhhccCCCCCChhHHHHHHH
Q 010120 301 EHKIFLR-----RVIIPLHKPKSLGTYFQQLSYCVMQFIEKEP---------KLSSTVINGLLKYWPITNSQKEVMFLGE 366 (518)
Q Consensus 301 EHk~Fl~-----rvLiPLHk~k~~~~yh~qL~yCv~qfleKDp---------~L~~~vi~glLk~WP~tns~KEv~FL~E 366 (518)
++...+. ..|+-|-+... .....+-+.++..+...++ .....+++-+-. .+..=...-+.-
T Consensus 164 ~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~----~~~~v~~~a~~~ 238 (530)
T 1wa5_B 164 AQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS----NKPSLIRTATWT 238 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS----CCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc----CCHHHHHHHHHH
Confidence 3332221 22222222111 1223334444444443322 334444433322 111101111222
Q ss_pred HHHHHhhcChHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHhhcc-----hhHHHHHHhccccccccchHHHHHHhhccc
Q 010120 367 IEEILEAINMVEFQKVMVSLFWRIGCCINSFHFQVAERALFLWNN-----DQIVNLIAHNRQVILPILLPVLEKNAQSHW 441 (518)
Q Consensus 367 leeILe~~~~~ef~~i~~pLF~~ia~ci~S~hfqVAERAL~lwnN-----e~~~~li~~n~~~IlPii~p~L~~~~~~HW 441 (518)
|..+...-.+..-..+...+...|...+.+..-.|-+.|+....| +.....+.+ .. ++|.|..... |=
T Consensus 239 L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~--~~----~v~~Lv~lL~-~~ 311 (530)
T 1wa5_B 239 LSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVID--VR----IPKRLVELLS-HE 311 (530)
T ss_dssp HHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHH--TT----CHHHHHHGGG-CS
T ss_pred HHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHh--cC----cHHHHHHHHC-CC
Confidence 233332210111112234455666667777777777777664432 111111111 12 3444444433 34
Q ss_pred hHHHHHHHHHHHHHHHhhCHHHH
Q 010120 442 NQAVLNLTLNVRKMFSEMDDVLF 464 (518)
Q Consensus 442 n~~V~~la~~vlkil~e~D~~lF 464 (518)
+..|+..+..++.-+..-++...
T Consensus 312 ~~~v~~~a~~~L~~l~~~~~~~~ 334 (530)
T 1wa5_B 312 STLVQTPALRAVGNIVTGNDLQT 334 (530)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ChhhHHHHHHHHHHHHcCCHHHH
Confidence 67788888888888876665443
No 49
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=30.56 E-value=2.1e+02 Score=25.52 Aligned_cols=108 Identities=12% Similarity=0.193 Sum_probs=65.2
Q ss_pred HHHHHHhhccCCCCCChhHHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHhhc------chhH
Q 010120 342 STVINGLLKYWPITNSQKEVMFLGEIEEILEAI-NMVEFQKVMVSLFWRIGCCINSFHFQVAERALFLWN------NDQI 414 (518)
Q Consensus 342 ~~vi~glLk~WP~tns~KEv~FL~EleeILe~~-~~~ef~~i~~pLF~~ia~ci~S~hfqVAERAL~lwn------Ne~~ 414 (518)
+.-|++--+.=|.+.+.|. |++|...+ +.++|..||.-|.+||.. ...+-.+.=.||.+.. ++++
T Consensus 7 E~~VreAT~~d~wGP~~~~------m~eIa~~T~~~~~~~~Im~~l~kRL~d--~~k~Wr~vyKaL~lleyLl~nGse~v 78 (144)
T 1eyh_A 7 EIKVREATSNDPWGPSSSL------MSEIADLTYNVVAFSEIMSMIWKRLND--HGKNWRHVYKAMTLMEYLIKTGSERV 78 (144)
T ss_dssp HHHHHHHTCSSSSCCCHHH------HHHHHHHTTSHHHHHHHHHHHHHHHSC--CGGGHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHhCCCCCCCCHHH------HHHHHHHhCCHhhHHHHHHHHHHHHcc--CCcchHHHhHHHHHHHHHHHhCCHHH
Confidence 3344444444455555554 56777665 778999999999999863 2245667777777543 3444
Q ss_pred HHHHHhcccccccc-chHHHHHHhhccchHHHHHHHHHHHHHHHh
Q 010120 415 VNLIAHNRQVILPI-LLPVLEKNAQSHWNQAVLNLTLNVRKMFSE 458 (518)
Q Consensus 415 ~~li~~n~~~IlPi-i~p~L~~~~~~HWn~~V~~la~~vlkil~e 458 (518)
+.-+.++...|..+ =|.-+... -.-|...||..|..++.+|.|
T Consensus 79 v~~~~~~~~~i~~L~~F~y~d~~-g~D~G~~VR~kak~l~~Ll~D 122 (144)
T 1eyh_A 79 SQQCKENMYAVQTLKDFQYVDRD-GKDQGVNVREKAKQLVALLRD 122 (144)
T ss_dssp HHHHHHTHHHHHGGGGCCCBCTT-SCBCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhHHHhhhccceeeCCC-ccchHHHHHHHHHHHHHHHCC
Confidence 44334443333211 01001112 335889999999999999986
No 50
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=29.71 E-value=4.6e+02 Score=30.68 Aligned_cols=110 Identities=14% Similarity=0.160 Sum_probs=55.2
Q ss_pred CCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHhhhhhccccccChHHHHHHHHHHHhcCCCC
Q 010120 218 IDHSFILRLLDLFDSDDPRERECLKTILHRVYGKFMVHRPFIRKSMSNIFYRFVFETEKHNGIAELLEILGSIISGFALP 297 (518)
Q Consensus 218 Id~~Fv~~Ll~lfdSeDpRERd~LKtiLHrIY~Kf~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFalP 297 (518)
+|-.-+.+++.-+.++|+.+|...-..|..+- ..-....... .++.+=-...-+|.| +.+|-..|+-.--.
T Consensus 25 ~Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q----~sp~aw~~~~-~iL~~s~~~~vR~fA----a~~L~~~I~~~W~~ 95 (1073)
T 3gjx_A 25 LDINLLDNVVNCLYHGEGAQQRMAQEVLTHLK----EHPDAWTRVD-TILEFSQNMNTKYYG----LQILENVIKTRWKI 95 (1073)
T ss_dssp CSHHHHHHHHHTTTCSSHHHHHHHHHHHHTSS----CCSCHHHHHT-CC---CCSHHHHHHH----HHHHHHHHHHTGGG
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH----cCchHHHHHH-HHhcCCCCHHHHHHH----HHHHHHHHHhhhhh
Confidence 46667778888888889988888888874432 2222221111 111000000001112 33444444432234
Q ss_pred ChHHHHHHHHHHhhcCCCCC--------chhhhhhhHHHHHHHHHHh
Q 010120 298 LKEEHKIFLRRVIIPLHKPK--------SLGTYFQQLSYCVMQFIEK 336 (518)
Q Consensus 298 LKeEHk~Fl~rvLiPLHk~k--------~~~~yh~qL~yCv~qfleK 336 (518)
|.++.+..+...|+.+...- .-..|-.+|+.++...+..
T Consensus 96 L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~ 142 (1073)
T 3gjx_A 96 LPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQ 142 (1073)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHH
Confidence 66787877777776654320 1123446666666655543
No 51
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=27.07 E-value=59 Score=37.42 Aligned_cols=82 Identities=15% Similarity=0.180 Sum_probs=56.7
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhhcccC-chhHHHHHHHHHHhhhhhccccccChHHHHHHHHHHHhcCCCCChHH
Q 010120 223 ILRLLDLFDSDDPRERECLKTILHRVYGKFMV-HRPFIRKSMSNIFYRFVFETEKHNGIAELLEILGSIISGFALPLKEE 301 (518)
Q Consensus 223 v~~Ll~lfdSeDpRERd~LKtiLHrIY~Kf~~-~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFalPLKeE 301 (518)
+++.++.|. .|.+=|+.....+||+...+.. .-|++-+.|..+.. .-...+.++.|.++|.||..|.- |
T Consensus 704 il~~l~~~~-~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~-----~~~~~e~~~fL~l~~qli~~f~~----~ 773 (980)
T 3ibv_A 704 IFLILDRMG-FNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLN-----SIDMNELVDVLSFISQLIHIYKD----N 773 (980)
T ss_dssp HHHHHHHSC-CSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHH-----HCCTTTHHHHHHHHHHHHHHTTT----T
T ss_pred HHHHHHhcC-CcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHHHHHHHH----H
Confidence 445566655 5677777799999999885533 33455666655442 22467899999999999999964 4
Q ss_pred HHHHHHHHhhcCC
Q 010120 302 HKIFLRRVIIPLH 314 (518)
Q Consensus 302 Hk~Fl~rvLiPLH 314 (518)
+..+|...|-||.
T Consensus 774 ~~~~l~~ll~~l~ 786 (980)
T 3ibv_A 774 MMEITNRMLPTLL 786 (980)
T ss_dssp SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6777777666644
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=25.84 E-value=6.2e+02 Score=29.44 Aligned_cols=211 Identities=14% Similarity=0.194 Sum_probs=122.0
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHhhhhhccccccChHHHHHHHHHHHhcCCCCChHH
Q 010120 222 FILRLLDLFDSDDPRERECLKTILHRVYGKFMVHRPFIRKSMSNIFYRFVFETEKHNGIAELLEILGSIISGFALPLKEE 301 (518)
Q Consensus 222 Fv~~Ll~lfdSeDpRERd~LKtiLHrIY~Kf~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFalPLKeE 301 (518)
++-.+++.+...+..=|+.-...+..|++.+...- -+.+--.++.++-.+.+-.+=--.|.+++.++..- | +
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a---~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~---~ 167 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA---IKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--K---D 167 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--H---H
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH---HHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--H---H
Confidence 34556777777788888888888888888887643 26666677777766666666666788888888732 2 3
Q ss_pred HHHHHHHHhhcCCCCCchhhhhhhHH----HHHHHHHH----hCCC-CHHHHHHHhhccCCCCCChhHHHHHHHHHHHHh
Q 010120 302 HKIFLRRVIIPLHKPKSLGTYFQQLS----YCVMQFIE----KEPK-LSSTVINGLLKYWPITNSQKEVMFLGEIEEILE 372 (518)
Q Consensus 302 Hk~Fl~rvLiPLHk~k~~~~yh~qL~----yCv~qfle----KDp~-L~~~vi~glLk~WP~tns~KEv~FL~EleeILe 372 (518)
..-...--|||.-.. ++....+++. .|++.++. +|=. .+..+|+.|.+ | . |+.+.+-
T Consensus 168 ~~~~~~~~~~p~~~~-~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~--p-----~------~~~~~~~ 233 (986)
T 2iw3_A 168 QVALRMPELIPVLSE-TMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIAD--P-----T------EVPETVH 233 (986)
T ss_dssp HHHHHHHHHHHHHHH-HTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHC--T-----T------HHHHHHH
T ss_pred HHHHhccchhcchHh-hcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcC--h-----h------hhHHHHH
Confidence 333334455664322 2222233333 34444443 2211 23444444432 2 1 1333333
Q ss_pred hcChHH--------HHHHHHHHHHHHHHhhCCchHHHHHHHHHhhcchhHHHHHHh--ccccccccchHHHHHHhhccch
Q 010120 373 AINMVE--------FQKVMVSLFWRIGCCINSFHFQVAERALFLWNNDQIVNLIAH--NRQVILPILLPVLEKNAQSHWN 442 (518)
Q Consensus 373 ~~~~~e--------f~~i~~pLF~~ia~ci~S~hfqVAERAL~lwnNe~~~~li~~--n~~~IlPii~p~L~~~~~~HWn 442 (518)
.+.... -..+|+||..| +++-...-+=..+.-+-+ .+..|+.+ -....+|.++|.|.++..++=+
T Consensus 234 ~l~~~tfv~~v~~~~l~~~~p~l~r---~l~~~~~~~~r~~~~~~~--n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~ 308 (986)
T 2iw3_A 234 LLGATTFVAEVTPATLSIMVPLLSR---GLNERETGIKRKSAVIID--NMCKLVEDPQVIAPFLGKLLPGLKSNFATIAD 308 (986)
T ss_dssp HHTTCCCCSCCCHHHHHHHHHHHHH---HHTSSSHHHHHHHHHHHH--HHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCS
T ss_pred HhhcCeeEeeecchhHHHHHHHHHh---hhccCcchhheeeEEEEc--chhhhcCCHHHHhhhhhhhhhHHHHHhhccCC
Confidence 332222 23578888766 554322221122222222 23333322 2455689999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 010120 443 QAVLNLTLNVRKMFSEM 459 (518)
Q Consensus 443 ~~V~~la~~vlkil~e~ 459 (518)
+.+|..+..+++.|...
T Consensus 309 pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 309 PEAREVTLRALKTLRRV 325 (986)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999999554
No 53
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=23.56 E-value=4.1e+02 Score=23.98 Aligned_cols=141 Identities=12% Similarity=0.199 Sum_probs=84.1
Q ss_pred CCCCCChhHHHHHHHHHHHHhh-ccCChhHhhhhCCHHHHHHHHhhcC-CCChHHH-------------------HHHHH
Q 010120 185 MFDPSWPHLQIVYDLLLKFITS-SCLDAKVAKRYIDHSFILRLLDLFD-SDDPRER-------------------ECLKT 243 (518)
Q Consensus 185 ~~e~sWpHLqlVYe~llrfv~s-~~~d~~~ak~~Id~~Fv~~Ll~lfd-SeDpRER-------------------d~LKt 243 (518)
..+.+|..-.-..+-|..++.. +.+.. ..+ ..++..|..++. ..+++=| .|+..
T Consensus 24 l~s~~w~~R~~a~~~L~~l~~~~~~~~~----~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ 98 (242)
T 2qk2_A 24 LEEKKWTLRKESLEVLEKLLTDHPKLEN----GEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASA 98 (242)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHCSSBCC----CCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHHccCCCCCC----CCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3478898888777778888876 44322 112 456666777773 6676654 34555
Q ss_pred HHHHHhhcccCchhHHHHHHHHHHhhhhhccccccChHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCCCCC-chhhh
Q 010120 244 ILHRVYGKFMVHRPFIRKSMSNIFYRFVFETEKHNGIAELLEILGSIISGFALPLKEEHKIFLRRVIIPLHKPK-SLGTY 322 (518)
Q Consensus 244 iLHrIY~Kf~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFalPLKeEHk~Fl~rvLiPLHk~k-~~~~y 322 (518)
++-.|..++-...+.+|.+....+..++-. .++.++++.+...++.=....|++=-.++.+++ --|.+. ....|
T Consensus 99 ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~----~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l-~~~~~~~~~~~~ 173 (242)
T 2qk2_A 99 CVPSLLEKFKEKKPNVVTALREAIDAIYAS----TSLEAQQESIVESLSNKNPSVKSETALFIARAL-TRTQPTALNKKL 173 (242)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHTT----SCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH-TTCCGGGCCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH-HHcCCCCccHHH
Confidence 555566666666667777777666665432 246677777766665544444555444444433 223333 34556
Q ss_pred hhhHHHHHHHHHH
Q 010120 323 FQQLSYCVMQFIE 335 (518)
Q Consensus 323 h~qL~yCv~qfle 335 (518)
.+.+.-++...++
T Consensus 174 l~~l~p~l~~~l~ 186 (242)
T 2qk2_A 174 LKLLTTSLVKTLN 186 (242)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 6677777766663
No 54
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=23.51 E-value=6.7e+02 Score=28.39 Aligned_cols=171 Identities=15% Similarity=0.184 Sum_probs=104.0
Q ss_pred hHHHHHHHHHHHHhhccCChhHhhhhCCHHHHHHHHhhc----------------CCCChHHHHHHHHHHHHHhhcccCc
Q 010120 192 HLQIVYDLLLKFITSSCLDAKVAKRYIDHSFILRLLDLF----------------DSDDPRERECLKTILHRVYGKFMVH 255 (518)
Q Consensus 192 HLqlVYe~llrfv~s~~~d~~~ak~~Id~~Fv~~Ll~lf----------------dSeDpRERd~LKtiLHrIY~Kf~~~ 255 (518)
|.+.|-++-.+|=.+=.++.. +++|++ -|=++| +++--|-++.+.++|-|.|-.-..-
T Consensus 17 ~~~~~~~l~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~q~~~~s 90 (778)
T 3opb_A 17 DSSTIDSLCAAFDKTLKSTPD-VQKYND-----AINTIFQLRQKSESGKMPADLTNSEALKDRQKIEEILTRSYQDHSES 90 (778)
T ss_dssp CHHHHHHHHHHHHHTTTSCTT-HHHHHH-----HHHHHTTTTCSTGGGCCCTTTSSSTTHHHHHHHHHHHHHHHHSCHHH
T ss_pred chhHHHHHHHHHhcccCCCCC-hHHHHH-----HHHHHHhcccccccccccccccchhhcccHHHHHHHHHHHhhCcHHH
Confidence 366777777777543332222 444543 344455 3455566888999999999999999
Q ss_pred hhHHHHHHHHHHhhhh-----------------------------------hccccccChHHHHHHHHHHHhcCCCCChH
Q 010120 256 RPFIRKSMSNIFYRFV-----------------------------------FETEKHNGIAELLEILGSIISGFALPLKE 300 (518)
Q Consensus 256 R~fIRk~Innif~~fi-----------------------------------yEte~hnGIaELLeIlgSIInGFalPLKe 300 (518)
|.++.+.|.+---+|+ +-.+.. -+.=+|-++.++++.|..-..+
T Consensus 91 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~~~~~~~~~~~~-~~~~~l~~~~~l~~~~~~~~~~ 169 (778)
T 3opb_A 91 RVHLSKLIQNDIPFALNLFEILSRSSIHVFVGCFSNKDATIALLNELQIRIHYGEDT-HVTYLLSIILQLLNKFKYNFKE 169 (778)
T ss_dssp HHHHHHHHHHTHHHHHHHHHTSCGGGHHHHHTTCCSGGGGHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCCCSTT
T ss_pred HHHHHHHHHhChHHHHHHHHhccCCceEeecccCCCHHHHHHHHHHHHHHhhcCCCc-chhHHHHHHHHHHHHcCccccc
Confidence 9988887776222221 111222 3555777888888888877766
Q ss_pred HHHHHHHHHhhcCCCCCchhhhhhhHHHHHHHHHHhCCCCHHHHHHHhhc-cC----CCCCChhHHHHHHHHHHHHhhc
Q 010120 301 EHKIFLRRVIIPLHKPKSLGTYFQQLSYCVMQFIEKEPKLSSTVINGLLK-YW----PITNSQKEVMFLGEIEEILEAI 374 (518)
Q Consensus 301 EHk~Fl~rvLiPLHk~k~~~~yh~qL~yCv~qfleKDp~L~~~vi~glLk-~W----P~tns~KEv~FL~EleeILe~~ 374 (518)
..||.|.|.|=-+. ....+...-.+.|++++.++-+...+...+. .= +.....-=+.++.-+..+++++
T Consensus 170 --~~~l~~~~~~~~~~---~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~ 243 (778)
T 3opb_A 170 --VRFLVKELILRISE---DEVKSMMLIIFAELQSSFQKDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSL 243 (778)
T ss_dssp --TTHHHHHHHTTTTC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTT
T ss_pred --hhhHHHHhccccCh---hhhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCC
Confidence 88888888883333 2346666777777777777665555544443 21 2212223344555566665554
No 55
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=22.16 E-value=6.5e+02 Score=25.78 Aligned_cols=107 Identities=12% Similarity=0.054 Sum_probs=61.7
Q ss_pred ChhHhhhhCCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchhHHHHH-HHHHHhhhhhccccccCh----HHHH
Q 010120 210 DAKVAKRYIDHSFILRLLDLFDSDDPRERECLKTILHRVYGKFMVHRPFIRKS-MSNIFYRFVFETEKHNGI----AELL 284 (518)
Q Consensus 210 d~~~ak~~Id~~Fv~~Ll~lfdSeDpRERd~LKtiLHrIY~Kf~~~R~fIRk~-Innif~~fiyEte~hnGI----aELL 284 (518)
++...+..++..-|-.|+.++.|+|+.-|+..-..|..|-+.-...|..+... .-..+...+-..+..... ..+.
T Consensus 132 ~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~ 211 (510)
T 3ul1_B 132 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT 211 (510)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHH
Confidence 34445556666678889999999999999999999988877665666655332 223444544333222222 2234
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHhhcCCCC
Q 010120 285 EILGSIISGFALPLKEEHKIFLRRVIIPLHKP 316 (518)
Q Consensus 285 eIlgSIInGFalPLKeEHk~Fl~rvLiPLHk~ 316 (518)
..+..+..|-......+...-...+|..|-..
T Consensus 212 ~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~ 243 (510)
T 3ul1_B 212 WTLSNLCRNKNPAPPLDAVEQILPTLVRLLHH 243 (510)
T ss_dssp HHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhcccchhHHHHHHhHHHHHHHHHhc
Confidence 45555555544333333333334445444444
No 56
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=21.79 E-value=2e+02 Score=25.40 Aligned_cols=79 Identities=20% Similarity=0.211 Sum_probs=51.3
Q ss_pred HHHHHhCCCCHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhcCh----------HHHHHHHHHHHHHHHHhhCCchHH
Q 010120 331 MQFIEKEPKLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINM----------VEFQKVMVSLFWRIGCCINSFHFQ 400 (518)
Q Consensus 331 ~qfleKDp~L~~~vi~glLk~WP~tns~KEv~FL~EleeILe~~~~----------~ef~~i~~pLF~~ia~ci~S~hfq 400 (518)
+..+..+.+-+..++..+.++=-++.+.+-+-+|.-+.+|+-.... ..|.+.+..+|..+..|. ..+-.
T Consensus 30 T~~a~~~~~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~~~~~~~-~~~r~ 108 (145)
T 3d9j_A 30 TKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCP-GDDKS 108 (145)
T ss_dssp HHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHHTSSC-GGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHHHHHhCC-HHHHH
Confidence 3334444444444444444444445666778888888888754422 357788888888777766 67778
Q ss_pred HHHHHHHhhc
Q 010120 401 VAERALFLWN 410 (518)
Q Consensus 401 VAERAL~lwn 410 (518)
-.+|-+.+|.
T Consensus 109 kl~rLl~iW~ 118 (145)
T 3d9j_A 109 KIVRVLNLWQ 118 (145)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 8899999997
No 57
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=20.94 E-value=7.8e+02 Score=26.28 Aligned_cols=83 Identities=11% Similarity=0.174 Sum_probs=56.5
Q ss_pred hhhHH----HHHHHHHHh---CCCC-HHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHhh
Q 010120 323 FQQLS----YCVMQFIEK---EPKL-SSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINMVEFQKVMVSLFWRIGCCI 394 (518)
Q Consensus 323 h~qL~----yCv~qfleK---Dp~L-~~~vi~glLk~WP~tns~KEv~FL~EleeILe~~~~~ef~~i~~pLF~~ia~ci 394 (518)
+..+. +|+-.|.+. .+.. ...+++.+.+.++..++.-+...|.=+-.+.-.. |+ .......+ +..|.
T Consensus 493 ~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~-p~-~~~~i~~~---l~~~~ 567 (621)
T 2vgl_A 493 HENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLF-PE-VKATIQDV---LRSDS 567 (621)
T ss_dssp CHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHC-GG-GHHHHHHH---HSSHH
T ss_pred hHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHC-hH-HHHHHHHH---HHHHh
Confidence 44555 888888653 3333 3467888888888888777777888777776544 32 23333334 44566
Q ss_pred C--CchHHHHHHHHHhhc
Q 010120 395 N--SFHFQVAERALFLWN 410 (518)
Q Consensus 395 ~--S~hfqVAERAL~lwn 410 (518)
. |.+..|=+||..+|.
T Consensus 568 ~~~~~d~evrdRA~~y~~ 585 (621)
T 2vgl_A 568 QLKNADVELQQRAVEYLR 585 (621)
T ss_dssp HHSCSSHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 6 999999999999875
No 58
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=20.78 E-value=2.7e+02 Score=32.26 Aligned_cols=78 Identities=8% Similarity=-0.021 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHhhCCchHHHHHHHHHhhcchhHHHHHHhccccccccchHHHHHHhhccchHHHHHHHHHHHHHHHh
Q 010120 379 FQKVMVSLFWRIGCCINSFHFQVAERALFLWNNDQIVNLIAHNRQVILPILLPVLEKNAQSHWNQAVLNLTLNVRKMFSE 458 (518)
Q Consensus 379 f~~i~~pLF~~ia~ci~S~hfqVAERAL~lwnNe~~~~li~~n~~~IlPii~p~L~~~~~~HWn~~V~~la~~vlkil~e 458 (518)
..-++.++++.|...+...+.+.-+-||++.....+...+..+-.. ++-+.++|.++ ...=.++|++++..+..-+++
T Consensus 168 ~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~d~~~-~~~~~~ali~~-~~~dKpsI~~l~~~l~~~i~~ 245 (997)
T 1vsy_5 168 YGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMTDYKD-IGRLIFLLIEC-CRVNELEIGMYADKILTDIVI 245 (997)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGGCHHH-HHHHHHHHHHT-CSCSSSSTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhcChHH-HHHHHHHHHHh-CcCCCHHHHHHHHHHHHHHHh
Confidence 3455667777777766676668889999999988888777655444 47888999887 333467888888877665554
Done!