Query 010121
Match_columns 517
No_of_seqs 304 out of 1921
Neff 10.2
Searched_HMMs 46136
Date Thu Mar 28 21:18:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010121.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010121hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 3E-58 6.4E-63 462.2 54.0 434 63-500 12-450 (455)
2 PRK10189 MATE family multidrug 100.0 3.1E-54 6.7E-59 437.3 56.1 429 66-497 27-466 (478)
3 PRK00187 multidrug efflux prot 100.0 1.7E-52 3.6E-57 424.7 55.4 430 63-495 5-446 (464)
4 PRK10367 DNA-damage-inducible 100.0 1.4E-50 3E-55 406.8 53.6 422 65-497 6-434 (441)
5 PRK01766 multidrug efflux prot 100.0 8E-50 1.7E-54 406.7 55.4 432 63-497 7-446 (456)
6 PRK09575 vmrA multidrug efflux 100.0 7.9E-50 1.7E-54 404.6 52.4 426 65-496 9-438 (453)
7 KOG1347 Uncharacterized membra 100.0 3E-42 6.5E-47 342.9 33.8 450 63-513 23-472 (473)
8 TIGR01695 mviN integral membra 100.0 4.4E-36 9.5E-41 310.4 50.2 413 70-493 2-428 (502)
9 TIGR00797 matE putative efflux 100.0 9.3E-36 2E-40 292.5 42.4 337 76-415 1-341 (342)
10 TIGR02900 spore_V_B stage V sp 100.0 5.7E-35 1.2E-39 301.1 48.8 413 71-492 2-433 (488)
11 PRK15099 O-antigen translocase 100.0 6.1E-33 1.3E-37 279.3 46.2 403 70-491 3-410 (416)
12 PF03023 MVIN: MviN-like prote 100.0 5.8E-29 1.3E-33 250.5 50.7 387 97-493 4-403 (451)
13 COG0728 MviN Uncharacterized m 100.0 1.8E-27 3.8E-32 235.1 49.8 419 69-494 8-438 (518)
14 PRK10459 colanic acid exporter 100.0 3E-25 6.4E-30 228.7 47.0 398 67-492 4-404 (492)
15 COG2244 RfbX Membrane protein 99.9 1.3E-22 2.9E-27 208.5 42.5 389 66-475 4-394 (480)
16 PRK00187 multidrug efflux prot 99.9 1.3E-20 2.8E-25 191.7 27.4 206 63-269 231-443 (464)
17 COG0534 NorM Na+-driven multid 99.9 1.8E-20 3.9E-25 188.9 25.9 208 284-494 13-222 (455)
18 PRK10367 DNA-damage-inducible 99.9 4.1E-20 8.9E-25 186.2 27.0 206 285-492 6-211 (441)
19 PRK10189 MATE family multidrug 99.9 5.7E-20 1.2E-24 187.0 27.0 204 285-491 26-235 (478)
20 PRK01766 multidrug efflux prot 99.9 9.6E-20 2.1E-24 185.7 25.9 206 63-269 234-441 (456)
21 PRK09575 vmrA multidrug efflux 99.9 1.5E-19 3.3E-24 183.4 25.6 206 284-492 8-214 (453)
22 TIGR01695 mviN integral membra 99.8 1.3E-16 2.8E-21 165.2 32.7 205 64-270 219-428 (502)
23 TIGR00797 matE putative efflux 99.8 1.9E-16 4.1E-21 155.5 23.2 194 296-492 1-196 (342)
24 PF01554 MatE: MatE; InterPro 99.7 4.1E-18 8.9E-23 148.1 8.7 162 296-459 1-162 (162)
25 PF01943 Polysacc_synt: Polysa 99.7 2.3E-14 5.1E-19 135.8 33.9 270 71-356 2-272 (273)
26 PF03023 MVIN: MviN-like prote 99.7 1.2E-14 2.6E-19 146.8 31.7 204 65-270 195-403 (451)
27 PF01554 MatE: MatE; InterPro 99.7 4.5E-18 9.7E-23 147.9 4.6 160 76-236 1-162 (162)
28 COG0728 MviN Uncharacterized m 99.7 3.3E-13 7.1E-18 134.3 35.4 205 65-271 229-438 (518)
29 TIGR02900 spore_V_B stage V sp 99.7 1.6E-14 3.5E-19 149.0 25.8 202 63-269 220-433 (488)
30 PRK10459 colanic acid exporter 99.6 3E-12 6.6E-17 132.1 35.3 200 64-269 203-404 (492)
31 PRK15099 O-antigen translocase 99.6 9.7E-13 2.1E-17 132.6 26.4 200 63-269 210-411 (416)
32 PF13440 Polysacc_synt_3: Poly 99.5 5.1E-11 1.1E-15 111.4 33.6 246 87-355 3-250 (251)
33 COG2244 RfbX Membrane protein 99.5 8.7E-12 1.9E-16 128.4 26.5 187 63-255 208-396 (480)
34 PF04506 Rft-1: Rft protein; 99.3 1.7E-08 3.6E-13 103.0 32.6 419 71-492 4-469 (549)
35 KOG1347 Uncharacterized membra 99.2 1.7E-09 3.7E-14 108.7 19.7 204 284-491 24-228 (473)
36 KOG2864 Nuclear division RFT1 99.1 2.1E-06 4.6E-11 82.1 33.2 417 66-492 6-448 (530)
37 PF07260 ANKH: Progressive ank 98.8 1.9E-05 4.1E-10 72.6 29.4 260 65-331 8-282 (345)
38 PF14667 Polysacc_synt_C: Poly 98.5 2.3E-05 5E-10 66.4 18.7 79 190-270 2-80 (146)
39 PF04506 Rft-1: Rft protein; 98.3 0.00016 3.6E-09 74.2 22.6 203 67-270 252-470 (549)
40 PF01943 Polysacc_synt: Polysa 98.2 0.00066 1.4E-08 63.9 22.3 187 292-492 3-190 (273)
41 PF07260 ANKH: Progressive ank 98.0 0.0045 9.7E-08 57.3 23.1 155 284-448 7-168 (345)
42 PF14667 Polysacc_synt_C: Poly 97.9 6.2E-05 1.3E-09 63.7 9.5 79 412-493 2-80 (146)
43 PF13440 Polysacc_synt_3: Poly 97.9 0.0043 9.4E-08 57.6 21.8 159 312-488 9-168 (251)
44 KOG2864 Nuclear division RFT1 97.6 0.053 1.1E-06 52.9 23.6 199 70-270 241-449 (530)
45 COG4267 Predicted membrane pro 96.2 1.3 2.8E-05 42.5 35.1 341 116-485 72-434 (467)
46 COG4267 Predicted membrane pro 82.3 52 0.0011 32.1 19.7 134 340-490 75-208 (467)
47 PLN00028 nitrate transmembrane 75.2 1E+02 0.0022 31.6 37.0 17 344-360 302-318 (476)
48 KOG2533 Permease of the major 74.0 1.1E+02 0.0025 31.5 30.4 64 201-264 154-221 (495)
49 TIGR01299 synapt_SV2 synaptic 73.5 1.5E+02 0.0032 32.6 24.8 16 124-139 217-232 (742)
50 TIGR00822 EII-Sor PTS system, 71.2 89 0.0019 29.1 16.0 33 339-371 110-142 (265)
51 PRK06814 acylglycerophosphoeth 63.4 2.9E+02 0.0063 32.1 39.7 28 203-230 130-157 (1140)
52 PF05684 DUF819: Protein of un 60.2 1.3E+02 0.0028 29.8 11.4 26 360-385 72-97 (378)
53 PF00558 Vpu: Vpu protein; In 58.8 14 0.00031 27.0 3.3 20 487-506 27-46 (81)
54 PF05975 EcsB: Bacterial ABC t 57.9 2E+02 0.0044 28.5 16.0 36 361-396 89-124 (386)
55 PF04505 Dispanin: Interferon- 57.1 71 0.0015 23.6 6.9 38 345-382 36-73 (82)
56 PRK09757 PTS system N-acetylga 55.4 1.8E+02 0.0039 27.2 17.2 33 339-371 111-143 (267)
57 COG3715 ManY Phosphotransferas 53.3 1.9E+02 0.0041 26.8 16.6 61 338-398 109-170 (265)
58 PF06963 FPN1: Ferroportin1 (F 53.2 2.6E+02 0.0056 28.3 17.7 63 313-385 28-90 (432)
59 PF10160 Tmemb_40: Predicted m 50.8 2.1E+02 0.0045 26.5 14.5 80 360-442 109-188 (261)
60 PF05977 MFS_3: Transmembrane 46.6 3.6E+02 0.0079 28.1 39.4 47 70-116 12-60 (524)
61 COG1295 Rbn Ribonuclease BN fa 34.9 4.1E+02 0.0089 25.3 15.9 18 350-367 122-139 (303)
62 PRK01030 tetrahydromethanopter 34.4 3.7E+02 0.0081 24.7 10.8 88 422-516 176-263 (264)
63 PF08627 CRT-like: CRT-like; 32.4 1.8E+02 0.0039 23.4 5.9 28 70-97 51-78 (130)
64 PF04505 Dispanin: Interferon- 31.0 1.9E+02 0.0042 21.3 5.7 35 130-164 42-76 (82)
65 PF03547 Mem_trans: Membrane t 30.8 3E+02 0.0064 27.2 9.0 15 373-387 34-48 (385)
66 PF11947 DUF3464: Protein of u 30.6 3.3E+02 0.0072 23.0 9.7 26 64-89 59-85 (153)
67 PF03904 DUF334: Domain of unk 30.0 2.5E+02 0.0054 25.3 7.0 40 140-179 142-181 (230)
68 PF15349 DCA16: DDB1- and CUL4 29.3 1.1E+02 0.0024 24.9 4.4 23 4-26 2-24 (216)
69 PRK01637 hypothetical protein; 28.6 5E+02 0.011 24.4 20.2 13 349-361 112-124 (286)
70 PF11457 DUF3021: Protein of u 28.2 3.3E+02 0.0071 22.1 16.3 28 365-393 4-31 (136)
71 PRK01637 hypothetical protein; 26.5 5.5E+02 0.012 24.2 18.4 11 503-513 273-283 (286)
72 PF12794 MscS_TM: Mechanosensi 26.0 6.2E+02 0.013 24.6 22.2 29 362-390 118-146 (340)
73 PF14184 YrvL: Regulatory prot 25.2 3.8E+02 0.0083 21.9 13.2 101 149-251 5-106 (132)
74 PF05313 Pox_P21: Poxvirus P21 24.1 4.4E+02 0.0096 22.8 7.2 26 244-269 135-160 (189)
75 PRK00523 hypothetical protein; 23.7 2.1E+02 0.0045 20.5 4.4 32 468-499 3-34 (72)
76 PF12597 DUF3767: Protein of u 23.0 3.1E+02 0.0067 22.0 5.9 7 442-448 44-50 (118)
77 PF04235 DUF418: Protein of un 21.8 4.9E+02 0.011 21.9 14.5 28 361-388 9-36 (163)
78 PF06210 DUF1003: Protein of u 21.5 3.1E+02 0.0067 21.6 5.5 7 454-460 18-24 (108)
79 KOG1304 Amino acid transporter 20.0 9.3E+02 0.02 24.5 24.5 72 366-448 359-430 (449)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=3e-58 Score=462.15 Aligned_cols=434 Identities=28% Similarity=0.419 Sum_probs=412.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhcCCCcc
Q 010121 63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLD 142 (517)
Q Consensus 63 ~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~~~~~g~~~~~ 142 (517)
.++..|+++++++|++++++.+.+++++|+.++||+|++++++.++++++..++ +.+..|++.++++.++|++|+||++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence 455889999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHH
Q 010121 143 MMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAV 221 (517)
Q Consensus 143 ~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 221 (517)
++++..+++++++++++++..++ +++.++++.+++.++|+.+.+.+|+++..++.|+..++.++.+++|+.||++.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999888776 99999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh-hC-CCchhHHHHHHHHHHHHHHHHHHHHHhCCC--CCCCCCCCHHhHhhHHHHHHHHHHH
Q 010121 222 IAAVALLLHTILSWLLILK-LG-LGLVGAAVALNASWWFIDITRLLYIFSGAC--GPTWSGFSWKAFHSLWSFVRLSLAS 297 (517)
Q Consensus 222 ~~i~~~~~~i~l~~~li~~-~~-~g~~G~a~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~p~ 297 (517)
.+++++++|+++|++|++. ++ +|+.|+++||++++++.++++++++.+++. .....+..+.+++.+|++++.|+|.
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~ 250 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI 250 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence 9999999999999999998 68 999999999999999999999999998752 2232333345668999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHH
Q 010121 298 AVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSF 377 (517)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 377 (517)
+++++.+...+...+.+.+++| ++.+|+|+++.++.++.+++..|++++.++++++++|+||++++++..+.++.+++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~ 328 (455)
T COG0534 251 FLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL 328 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 78999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccccccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCcchhhHHHHHHHHHHHhHHHH
Q 010121 378 LIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLG 457 (517)
Q Consensus 378 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~~i~~~ 457 (517)
.+++..+++++++++++..+|++|+|+.+.+..++++.++..++++++.+..+++||.||+|.++.+++++.|.+.+|+.
T Consensus 329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~ 408 (455)
T COG0534 329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA 408 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Q 010121 458 LILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYKTNWNKEAA 500 (517)
Q Consensus 458 ~~l~~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~ 500 (517)
+++++.. +|..|+|+++.+++.++.++..+++++.+|++...
T Consensus 409 ~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (455)
T COG0534 409 YLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAV 450 (455)
T ss_pred HHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 9998765 89999999999999999999999999988887654
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=3.1e-54 Score=437.26 Aligned_cols=429 Identities=19% Similarity=0.252 Sum_probs=398.6
Q ss_pred HHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhcCCCcchHH
Q 010121 66 EGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMG 145 (517)
Q Consensus 66 ~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~~~~~g~~~~~~~~ 145 (517)
..|+++++++|.++++++..+...+|+.+++++|++++|+++++.++..+. ..+..|++++.+++++|++|++|+++++
T Consensus 27 ~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~-~~~~~gl~~g~~~lvsq~~Ga~~~~~~~ 105 (478)
T PRK10189 27 FWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI-MAFFAAIDLGTTVVVAFSLGKRDRRRAR 105 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 589999999999999999999999999999999999999999999998887 8899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcC--CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHH
Q 010121 146 VYLQRSWIILITTALMLMFM-YIFAQQILSLIG--QTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVI 222 (517)
Q Consensus 146 ~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 222 (517)
+..++++.++++++++.+++ +++.++++.+++ .|+|+.+.+..|+++..++.|+..+...+.+++|+.||++.++++
T Consensus 106 ~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~i 185 (478)
T PRK10189 106 AAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLLI 185 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHHH
Confidence 99999999999999988877 778899999984 689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh----CCCchhHHHHHHHHHHHHHHHHHHHHHhC-C--CCCCCCC-CCHHhHhhHHHHHHHH
Q 010121 223 AAVALLLHTILSWLLILKL----GLGLVGAAVALNASWWFIDITRLLYIFSG-A--CGPTWSG-FSWKAFHSLWSFVRLS 294 (517)
Q Consensus 223 ~i~~~~~~i~l~~~li~~~----~~g~~G~a~a~~~~~~~~~~~~~~~~~~~-~--~~~~~~~-~~~~~~~~~~~~l~~~ 294 (517)
++++.++|+++++++++.+ ++|+.|+++|+.+++++..++..+++.++ + .+.++++ +...+++.+|+++++|
T Consensus 186 ~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iG 265 (478)
T PRK10189 186 NGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMGIG 265 (478)
T ss_pred HHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHHHh
Confidence 9999999999999999864 79999999999999999988877666543 2 1222222 1123567899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHH
Q 010121 295 LASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVF 374 (517)
Q Consensus 295 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~ 374 (517)
+|..++.......+.+.+.+++.+| ++++|+|+++.++.++.+++..|++++.++++++++|+||++++|+..+.+.+
T Consensus 266 ~P~~~~~~~~~~~~~~~~~~~~~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~~~ 343 (478)
T PRK10189 266 IPASIESVLFNGGKLLTQMFVAGMG--TSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHVFW 343 (478)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999988888888888888888 78999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccccccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCcchhhHHHHHHHHHHHhH
Q 010121 375 SSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGI 454 (517)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~~i 454 (517)
+++++++.++++++++++++..+|++|+|+.+.+..++++.++..++++++.+..+.++|.||++.++.+++++.|++.+
T Consensus 344 ~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v~i 423 (478)
T PRK10189 344 LSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGCRV 423 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHhcChHH
Q 010121 455 PLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYKTNWNK 497 (517)
Q Consensus 455 ~~~~~l~~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~ 497 (517)
|+.+++++..++|+.|+|++..+++.+.+++..+++++.+|++
T Consensus 424 p~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~ 466 (478)
T PRK10189 424 VAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLW 466 (478)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 9999998877899999999999999999999999999999987
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=1.7e-52 Score=424.70 Aligned_cols=430 Identities=22% Similarity=0.266 Sum_probs=393.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhcCCCcc
Q 010121 63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLD 142 (517)
Q Consensus 63 ~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~~~~~g~~~~~ 142 (517)
+++..|++++.++|.+++++...+.+.+|+.+++++|++++++++++.++..++ ..+..|++++..+.++|++|++|++
T Consensus 5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~~~~~~i~aq~~Ga~~~~ 83 (464)
T PRK00187 5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVIAAVGTLVAIRHGAGDIE 83 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChh
Confidence 345799999999999999999999999999999999999999999999999988 7888999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHH
Q 010121 143 MMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVI 222 (517)
Q Consensus 143 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 222 (517)
++++++++++.+.++++++..++..+.++++.+++.|+|+.+.+..|+++..++.|+..+....++++|+.|+++.+++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 163 (464)
T PRK00187 84 GATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVI 163 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 99999999999999999888777557799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh----CCCchhHHHHHHHHHHHHHHHHHHHHHhCCC--CCC-CCCCCHHhHhhHHHHHHHHH
Q 010121 223 AAVALLLHTILSWLLILKL----GLGLVGAAVALNASWWFIDITRLLYIFSGAC--GPT-WSGFSWKAFHSLWSFVRLSL 295 (517)
Q Consensus 223 ~i~~~~~~i~l~~~li~~~----~~g~~G~a~a~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~l~~~~ 295 (517)
++++.++|+++|++|++.+ ++|+.|+++|+.+++....+.+.+++++++. +.+ ++++.+.+++.+|++++.++
T Consensus 164 ~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~ 243 (464)
T PRK00187 164 SLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGL 243 (464)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhh
Confidence 9999999999999999863 4899999999999998888877777766431 122 11222335678999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHH
Q 010121 296 ASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFS 375 (517)
Q Consensus 296 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~ 375 (517)
|.+++++.+...+.+++.+++++| ++++|+++++.++..+.+++..+++++..+.+++++|+||++++++..+.++.+
T Consensus 244 P~~~~~~~~~~~~~i~~~~i~~~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~ 321 (464)
T PRK00187 244 PIGGTYAVEVGLFTFAALCMGALG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGF 321 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999998 789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccccccccC--cH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCcchhhHHHHHHHHH
Q 010121 376 SFLIGLTLSLILIVTRNQYPALFSS--DP---EVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYY 450 (517)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~l~~l~~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~ 450 (517)
+++++++.+++++++++++.++|++ |+ |+.+.+..++++.+++.++++++.+..+++++.||++.++++++++.|
T Consensus 322 ~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~ 401 (464)
T PRK00187 322 GAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYW 401 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHH
Confidence 9999999999999999999999974 44 678889999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHhcCh
Q 010121 451 LFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYKTNW 495 (517)
Q Consensus 451 ~~~i~~~~~l~~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~ 495 (517)
++++|+.+++.+.+++|+.|+|+++.+++.+..++...++++++|
T Consensus 402 ~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~~~~ 446 (464)
T PRK00187 402 LVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEWKTA 446 (464)
T ss_pred HHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888999999999999999998887666654433
No 4
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=1.4e-50 Score=406.79 Aligned_cols=422 Identities=19% Similarity=0.211 Sum_probs=372.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhcC-ChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhcCCCcch
Q 010121 65 KEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHI-STLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDM 143 (517)
Q Consensus 65 ~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~l-g~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~~~~~g~~~~~~ 143 (517)
++.|+++++++|.+++++...+++++|+.++|++ |++++++++++.++..+. ..+..+++.+.++.++|++|+||+++
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 4678899999999999999999999999999998 677999999999999988 88889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHH
Q 010121 144 MGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVI 222 (517)
Q Consensus 144 ~~~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 222 (517)
+++..++++.+++++++++.++ ..+.++++.+++.++|+.+.+.+|+++..++.|+..+..++.+++|+.||++.+++.
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~ 164 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL 164 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 9999999999999999988876 778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHHHhCC-CC-CCCCCCCHHhHhhHHHHHHHHHHHHHH
Q 010121 223 AAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGA-CG-PTWSGFSWKAFHSLWSFVRLSLASAVM 300 (517)
Q Consensus 223 ~i~~~~~~i~l~~~li~~~~~g~~G~a~a~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~l~~~~p~~~~ 300 (517)
.++++++|+++++++++.+++|+.|+++||.+++++.+++..+++++++ .+ .+++.++...++.+|+++++|.|..++
T Consensus 165 ~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~ 244 (441)
T PRK10367 165 LVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIMLR 244 (441)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHHH
Confidence 9999999999999999988999999999999999999988877776542 11 111111111124689999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHH
Q 010121 301 LCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIG 380 (517)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~ 380 (517)
...+...+.+.+.+++++| ++++|+|+++.++.++.+++..|++++.+|.+++++|+||++++|+..+.+.+++++++
T Consensus 245 ~~~~~~~~~~~~~~~~~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~ 322 (441)
T PRK10367 245 SLLLQLCFGAITVLGARLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVA 322 (441)
T ss_pred HHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 67999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccccccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccC---cchhhHHHHHHHHHHHhHHHH
Q 010121 381 LTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAG---WQATVAYVNIGCYYLFGIPLG 457 (517)
Q Consensus 381 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g---~~~~~~~~~~~~~~~~~i~~~ 457 (517)
.+++++++++++++..+|++|+|+.+.+..++++.++..+......+..+++++.+ |+|.++.+++++.|+..++.
T Consensus 323 ~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~~~- 401 (441)
T PRK10367 323 LLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTLLTL- 401 (441)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHH-
Confidence 99999999999999999999999999999999998876443334444444455555 59999999999987522222
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHhcChHH
Q 010121 458 LILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYKTNWNK 497 (517)
Q Consensus 458 ~~l~~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~ 497 (517)
+.+|+.|+|+++.+++.++.++...+++++ |++
T Consensus 402 ------~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~-~~~ 434 (441)
T PRK10367 402 ------PWLGNHGLWLALTVFLALRGLSLAAIWRRH-WRN 434 (441)
T ss_pred ------HHcCchHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 246999999999999999999877766555 754
No 5
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=8e-50 Score=406.67 Aligned_cols=432 Identities=23% Similarity=0.361 Sum_probs=398.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhcCCCcc
Q 010121 63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLD 142 (517)
Q Consensus 63 ~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~~~~~g~~~~~ 142 (517)
.++..|++++.++|.+++++...+...+|+.+++++|++++++++++.++..+. ..+..|++.+..+.++|++|++|++
T Consensus 7 ~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~-~~~~~g~~~a~~~~vs~~~g~~~~~ 85 (456)
T PRK01766 7 YKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV-ILFGHGLLLALTPIVAQLNGAGRRE 85 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChH
Confidence 566899999999999999999999999999999999999999999999987776 7788899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHH
Q 010121 143 MMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAV 221 (517)
Q Consensus 143 ~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 221 (517)
+.++.+++++.+.++++++++++ +.+.++++.+++.++++.+.+..|+++..++.++..+...+++++|+.|+++.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 165 (456)
T PRK01766 86 RIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMV 165 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999888777 77788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh----CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCC---CCCCCCCHHhHhhHHHHHHHH
Q 010121 222 IAAVALLLHTILSWLLILKL----GLGLVGAAVALNASWWFIDITRLLYIFSGACG---PTWSGFSWKAFHSLWSFVRLS 294 (517)
Q Consensus 222 ~~i~~~~~~i~l~~~li~~~----~~g~~G~a~a~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~ 294 (517)
.++++.++|+++++++++.. ++|+.|+++++.+++++..++..+++++++.. +.+.++.+.+++.+|++++.+
T Consensus 166 ~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l~ 245 (456)
T PRK01766 166 IGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKLG 245 (456)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHcc
Confidence 99999999999999998742 58999999999999999999888887765311 112222233567899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHH
Q 010121 295 LASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVF 374 (517)
Q Consensus 295 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~ 374 (517)
+|.+++...+...+.++..+++++| ++++|+|+++.++.++.+++..+++++..+.+++++|+||++++++..+.+++
T Consensus 246 ~P~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~~~ 323 (456)
T PRK01766 246 LPIGLAIFFEVSLFAVVTLLVSPLG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGLA 323 (456)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 9999999999998999999999988 68899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccccccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCcchhhHHHHHHHHHHHhH
Q 010121 375 SSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGI 454 (517)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~~i 454 (517)
+++.++++.+++++.+++++..+|++|+++.+.+..++++..+..++++++.+..+++++.||++.++.+++++.|++.+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i 403 (456)
T PRK01766 324 VGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLGL 403 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHhcChHH
Q 010121 455 PLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYKTNWNK 497 (517)
Q Consensus 455 ~~~~~l~~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~ 497 (517)
|+.+++.+.+++|+.|+|+++.+++.+..++...++++.+||.
T Consensus 404 ~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (456)
T PRK01766 404 PLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQRQP 446 (456)
T ss_pred HHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998878899999999999999999998888777766554
No 6
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=7.9e-50 Score=404.61 Aligned_cols=426 Identities=19% Similarity=0.241 Sum_probs=387.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhcC-ChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhcCCCcch
Q 010121 65 KEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHI-STLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDM 143 (517)
Q Consensus 65 ~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~l-g~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~~~~~g~~~~~~ 143 (517)
+..|++++.++|.+++++...+++++|+.+++++ |+++++++++++++..+. ..+..+++.+.++.++|++|+||+|+
T Consensus 9 ~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~~ 87 (453)
T PRK09575 9 SIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVGMGTGSLLSIKRGEGDLEK 87 (453)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHhcCCCHHH
Confidence 4779999999999999999999999999999985 999999999999999988 77888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHH
Q 010121 144 MGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVI 222 (517)
Q Consensus 144 ~~~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 222 (517)
.++.+++++.+++++++++.++ +.+.++++.+++.++++.+.+..|+++..++.|+..+......++|+.|+++.+++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 167 (453)
T PRK09575 88 AKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGL 167 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 9999999999999999988777 889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC-CCCHHhHhhHHHHHHHHHHHHHHH
Q 010121 223 AAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWS-GFSWKAFHSLWSFVRLSLASAVML 301 (517)
Q Consensus 223 ~i~~~~~~i~l~~~li~~~~~g~~G~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~p~~~~~ 301 (517)
++.+.++|+++++++++.+++|+.|+++|+.+++++.+++.++++++++.+.+++ +..+.+++.+|+++++|.|..++.
T Consensus 168 ~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~~ 247 (453)
T PRK09575 168 MVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFFMY 247 (453)
T ss_pred HHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHHHH
Confidence 9999999999999999988999999999999999999998888877654322221 111234567899999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHH
Q 010121 302 CVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGL 381 (517)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~ 381 (517)
......+.+.+.+.+++|+ +.++|+|+++.++..+.+++..|++++..|.+|+++|+||++++++..+.++++++..++
T Consensus 248 ~~~~~~~~~~~~~~~~~g~-~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~~ 326 (453)
T PRK09575 248 LYGSFVVALHNRLFMEYGS-ALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAGI 326 (453)
T ss_pred HHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Confidence 9888888888888888873 468999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccccccccC-cHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCcchhhHHHHHHHHHHHhHHHHHHH
Q 010121 382 TLSLILIVTRNQYPALFSS-DPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLIL 460 (517)
Q Consensus 382 ~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~~i~~~~~l 460 (517)
+.+++++++++++..+|++ |+|+.+.+..++++.+++.++++++.+..+++++.||++.++..++... ++++|+.+++
T Consensus 327 ~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~v~ip~~~ll 405 (453)
T PRK09575 327 AWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGNM-LIQLPFLFIL 405 (453)
T ss_pred HHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHhH-HHHHHHHHHH
Confidence 9999999999999999995 7899999999999999999999999999999999999999999998765 7899999998
Q ss_pred HHhcCCChhhHHHHHHHHHHHHHHHHHHHHHhcChH
Q 010121 461 GYLVGLEVKGIWCGMLCGTILQTCVIFGIIYKTNWN 496 (517)
Q Consensus 461 ~~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~~ 496 (517)
+. .+|+.|+|+++.+++.+..++...+++ ++|+
T Consensus 406 ~~--~~G~~Gvw~a~~~~~~~~~~~~~~~~~-~~~~ 438 (453)
T PRK09575 406 PK--WLGVDGVWLAMPLSNIALSLVVAPMLW-RDVK 438 (453)
T ss_pred HH--HHCcchHhhHHHHHHHHHHHHHHHHHH-HHHH
Confidence 54 369999999999999998887665554 3444
No 7
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=3e-42 Score=342.90 Aligned_cols=450 Identities=46% Similarity=0.736 Sum_probs=432.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhcCCCcc
Q 010121 63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLD 142 (517)
Q Consensus 63 ~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~~~~~g~~~~~ 142 (517)
...+.|++++++.|.++..+.+.+...+++.++||+|+.++++.+++++..+...+.+..|+..+..++++|++|+++++
T Consensus 23 ~~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~ 102 (473)
T KOG1347|consen 23 LVTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFT 102 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccc
Confidence 36789999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHH
Q 010121 143 MMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVI 222 (517)
Q Consensus 143 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 222 (517)
....+.+++..+....+++...++.+.++++..+++++++...+..|.++.++..+..........++|++++.....+.
T Consensus 103 ~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~ 182 (473)
T KOG1347|consen 103 ALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVI 182 (473)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHhHhhHHHHHHHHHHHHHHHH
Q 010121 223 AAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLC 302 (517)
Q Consensus 223 ~i~~~~~~i~l~~~li~~~~~g~~G~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~ 302 (517)
...+.++|+.+++++++..++|..|++++..+++++....+..|.........|..+++. ++.++++++.++|..++..
T Consensus 183 ~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~-~~~~~~~~~lai~s~~mic 261 (473)
T KOG1347|consen 183 GLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGE-FDSWGPFFALAIPSAVMIC 261 (473)
T ss_pred HHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHh-hhhHHHHHHHhhcchheeH
Confidence 999999999999999999999999999999999999999999998887667778888887 8999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHH
Q 010121 303 VEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLT 382 (517)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 382 (517)
.+++.+.+..+..+.+++...++++.++..++....++++.+++.+...++++.+|+|+++++|...+.++..++..+..
T Consensus 262 lE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~ 341 (473)
T KOG1347|consen 262 LEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGAS 341 (473)
T ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999767899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccccccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCcchhhHHHHHHHHHHHhHHHHHHHHH
Q 010121 383 LSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGY 462 (517)
Q Consensus 383 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~~i~~~~~l~~ 462 (517)
.+..+....+.+..+|++|+++.+...+..++++.+.++++.+.+..+..++.|+++...++++..++++++|..+++.+
T Consensus 342 ~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~ 421 (473)
T KOG1347|consen 342 LGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGF 421 (473)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCChhhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhhhCCcc
Q 010121 463 LVGLEVKGIWCGMLCGTILQTCVIFGIIYKTNWNKEAAVAGDRIRKWGGHT 513 (517)
Q Consensus 463 ~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (517)
..++|..|+|.++..+..+..........+.+|++..++.+.+...++++.
T Consensus 422 ~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~~~~~a~~~~~~~~~~~ 472 (473)
T KOG1347|consen 422 FTKFGVKGLWIGILLGFSVQTLVLAIVTARTDWKNQAEKAFARIIASLVLV 472 (473)
T ss_pred EEecCceEEEeehHHHHHHHHHHHHHheeeccHHHHHHHHHHHHHhhccCC
Confidence 889999999999999988888887778888999999999999998887764
No 8
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=4.4e-36 Score=310.42 Aligned_cols=413 Identities=14% Similarity=0.106 Sum_probs=347.3
Q ss_pred HHHhHHHHHHHHHHHhHHHHHHHHHhhc-CChHHH-HHHHHHHHHHHHHHHHHH-HhHHhhHHHHHHHHhcCCCcchHHH
Q 010121 70 LWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLAL-AAVSVENSVIAGFSFGAM-LGMGSALETLCGQAYGAGQLDMMGV 146 (517)
Q Consensus 70 i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~-a~~~~~~~i~~~~~~~~~-~gl~~a~~~~~~~~~g~~~~~~~~~ 146 (517)
+.|.+.-..+++++..+++++|..++++ +|++++ ++++.+.++...+..... .|++++..+...++.+++ |+.++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 5788899999999999999999999996 899999 899999999876623333 467888777776654322 57776
Q ss_pred HHHHHHHHHHHHH-HHHHHH-HHhHHHHHHHc--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHH
Q 010121 147 YLQRSWIILITTA-LMLMFM-YIFAQQILSLI--GQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVI 222 (517)
Q Consensus 147 ~~~~~l~~~~~~~-~~~~~~-~~~~~~l~~~~--~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 222 (517)
.+.+++....+.+ ++.+++ +++.+++..++ +.+++..+.+..|+++..++.++..+....++++|+.||++.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 6766665555444 444555 77888888877 4567777889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCchhHH--HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHhHhhHHHHHHHHHHHHHH
Q 010121 223 AAVALLLHTILSWLLILKLGLGLVGAA--VALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVM 300 (517)
Q Consensus 223 ~i~~~~~~i~l~~~li~~~~~g~~G~a--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~ 300 (517)
++..++++++..+++ ..++|..|++ +++++++.+..++.+++.+|++.+.+. +++ .+++.+|++++++.|..++
T Consensus 160 ~i~~~i~~i~~~~~~--~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~k~~l~~~~p~~~~ 235 (502)
T TIGR01695 160 PILFNIGVILSLLFF--DWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKP-RFN-FRDPGLKRFLKLFLPTTLG 235 (502)
T ss_pred HHHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccC-cCC-CCChhHHHHHHHHHHHHHH
Confidence 999988877754444 3468999988 999999999998888777664322111 121 1346789999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHH
Q 010121 301 LCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSN-MVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLI 379 (517)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~-~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~ 379 (517)
.+...+...+++.+.+.++ +.++++|+.+.++.+++. .+..+++++..|.+++++|+||++++++..++++++...+
T Consensus 236 ~~~~~~~~~id~~~~~~~~--~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (502)
T TIGR01695 236 SSASQITLLINTALASFLE--IGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLLL 313 (502)
T ss_pred HHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999998877766 678999999999998876 4678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccccccccC----cHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCcchhhHHHHHHHHHHHhHH
Q 010121 380 GLTLSLILIVTRNQYPALFSS----DPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIP 455 (517)
Q Consensus 380 ~~~~~~~~~~~~~~l~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~~i~ 455 (517)
+++++++++++++++..+|.+ |+|..+.+..++++++++.++.+++.+..+.+++.||+|.+++.++... +++++
T Consensus 314 ~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~i~i~ 392 (502)
T TIGR01695 314 TIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISV-VLNAL 392 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHH-HHHHH
Confidence 999999999999999999876 5677889999999999999999999999999999999999999999987 78999
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHhc
Q 010121 456 LGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYKT 493 (517)
Q Consensus 456 ~~~~l~~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~ 493 (517)
+++++. +.+|..|+|+++.+++.+..++..++++|+
T Consensus 393 l~~~l~--~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 393 LSLLLI--FPLGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 988884 457999999999999999988876666654
No 9
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=9.3e-36 Score=292.53 Aligned_cols=337 Identities=33% Similarity=0.531 Sum_probs=308.8
Q ss_pred HHHHHHHHHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhcCCCcchHHHHHHHHHHHH
Q 010121 76 PAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIIL 155 (517)
Q Consensus 76 p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~ 155 (517)
|.++++++..+...+|+.+++++|++++++++++..+..+. ..+..|++++..+.++++.|++|+|+.++..++.+.+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~-~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL-FSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999988877 78899999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHH
Q 010121 156 ITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILS 234 (517)
Q Consensus 156 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~l~ 234 (517)
..++++.+++ +++.+++.++++.+++..+.+..|+++..++.++..+.....+++|+.||++.+++.++.+.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 9999998877 788999999988788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-hhC-CCchhHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCCCHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010121 235 WLLIL-KLG-LGLVGAAVALNASWWFIDITRLLYIFSG-ACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMAL 311 (517)
Q Consensus 235 ~~li~-~~~-~g~~G~a~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~ 311 (517)
+++++ .++ +|+.|+++++.+++++..++..++.+++ +.+.+|++..+.+++.+|++++++.|.+++++...+...++
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 99998 677 8899999999999999999888777753 23333322222345789999999999999999999999999
Q ss_pred HHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010121 312 ILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTR 391 (517)
Q Consensus 312 ~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (517)
+.+++.+| +.++++|+++.++.++..+++.+++++..|.++++++++|+++.++..++++++.+.++++..+++.+++
T Consensus 240 ~~i~~~~g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (342)
T TIGR00797 240 ALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFR 317 (342)
T ss_pred HHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998887 7789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCcHHHHHHHHHHHHHH
Q 010121 392 NQYPALFSSDPEVIDLVIDLTPLL 415 (517)
Q Consensus 392 ~~l~~l~~~~~~~~~~~~~~l~i~ 415 (517)
+++.++|++|+++.+.+..++++.
T Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 318 EFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999999988888764
No 10
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=5.7e-35 Score=301.09 Aligned_cols=413 Identities=15% Similarity=0.149 Sum_probs=346.9
Q ss_pred HHhHHHHHHHHHHHhHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhcCCCcchHHHHHH
Q 010121 71 WYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQ 149 (517)
Q Consensus 71 ~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~~~~~g~~~~~~~~~~~~ 149 (517)
.|.+.|.+++++...+.+++|+.+++| +|++++|+++.++++..++......|++++..+.++|..|++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 467899999999999999999999996 7999999999999998887455567999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHH
Q 010121 150 RSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALL 228 (517)
Q Consensus 150 ~~l~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~ 228 (517)
.++.+.++.++++.++ ..+.+++...++.+++. ..++++..+..++..+....++++|+.+|++..+..++++.+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 9999999999988776 66777777766655543 346778888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh-----CCCchhHHHHHHHHHHHHHHHHHHHHHhCCC-C--CCCCCCCHHhHhhHHHHHHHHHHHHHH
Q 010121 229 LHTILSWLLILKL-----GLGLVGAAVALNASWWFIDITRLLYIFSGAC-G--PTWSGFSWKAFHSLWSFVRLSLASAVM 300 (517)
Q Consensus 229 ~~i~l~~~li~~~-----~~g~~G~a~a~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~l~~~~p~~~~ 300 (517)
+|+.++..++..+ ++|+.|+++++.+++.+..++.+++.++++. + .++.+..+.+++.+|++++++.|.+++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 9988876665432 3668888899999999999887766655321 1 112112223456889999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcC----c-hh---hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHH
Q 010121 301 LCVEIWYFMALILFAGYLK----N-AK---LSVAGL-SICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVV 371 (517)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~----~-~~---~~~a~~-~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~ 371 (517)
++.......+++.++++.. . .. ...+.| +++.++..++..+..+++++..|.+++++|+||+++.++..++
T Consensus 238 ~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~ 317 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQ 317 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999988876532 0 01 122333 3566777788788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCcchhhHHHHHHHHHH
Q 010121 372 AVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYL 451 (517)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~ 451 (517)
.+++...+++++++++.++++++..+|.++++ +..+++++++..++.+++....+++++.||+|..++.++++. +
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i 392 (488)
T TIGR02900 318 AIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGA-I 392 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH-H
Confidence 99999999999999999999999999876543 567899999999999999999999999999999999999988 8
Q ss_pred HhHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHh
Q 010121 452 FGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYK 492 (517)
Q Consensus 452 ~~i~~~~~l~~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~ 492 (517)
+++++.+.+...+.+|+.|+|+++.+++.+..++..+..+|
T Consensus 393 ~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 393 VKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999888854477899999999999999998887776654
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=6.1e-33 Score=279.28 Aligned_cols=403 Identities=11% Similarity=0.003 Sum_probs=336.6
Q ss_pred HHHhHHHHHHHHHHHhHHHHHHHHHhh-cCChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhcCCCcchHHHHH
Q 010121 70 LWYLAGPAIFMTICQYPLGAITQVFSG-HISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYL 148 (517)
Q Consensus 70 i~~~~~p~~~~~~~~~~~~~i~~~~i~-~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~~~~~g~~~~~~~~~~~ 148 (517)
+.|.+.....++++..+.+++...++. .+|++++|.++..+++..++......|++++.++.++|+ ++|+++.++++
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 678888889999999999999998888 589999999999999998875656888989988999988 67888999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHH
Q 010121 149 QRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVAL 227 (517)
Q Consensus 149 ~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~ 227 (517)
+.++.+.+..+++++++ +.+.+|+...++.+++. ..+..+..+..++..+.....+.+|+.||++.++...+.+.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998877 88889998877766653 24455556656666778899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHHHhCCC-CCCCCCCCHHhHhhHHHHHHHHHHHHHHHHHHHH
Q 010121 228 LLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGAC-GPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIW 306 (517)
Q Consensus 228 ~~~i~l~~~li~~~~~g~~G~a~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~ 306 (517)
++|+.+ +++++.+ +|+.|+++|+.+++.+..+...+++++++. +.++.+++ .+++.+|+++++|.|..+++....+
T Consensus 157 ~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPS-WDNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhcc-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887 4444432 499999999999999988877776665432 11111222 2456789999999999999999999
Q ss_pred HHHHHHHHHh-hcCchhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHH
Q 010121 307 YFMALILFAG-YLKNAKLSVAGLSICMNILGW-SNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLS 384 (517)
Q Consensus 307 ~~~~~~~~~~-~~~~~~~~~a~~~i~~~i~~~-~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (517)
....++.+++ .+| ++++|.|+++.++.+. ...+..+++++..|.++++ +|+++.++..++.......++++.+
T Consensus 234 ~~~~~~~~l~~~~g--~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (416)
T PRK15099 234 AYVMMRNLLAAHYS--WDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAAS 308 (416)
T ss_pred HHHHHHHHHHhcCC--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999886 666 7899999999999774 5789999999999999995 6788999999999999999999999
Q ss_pred HHHHhccccccccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCcchhhHHHHHHHHHHHhHHHHHHHHHhc
Q 010121 385 LILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLV 464 (517)
Q Consensus 385 ~~~~~~~~~l~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 464 (517)
++++++++++..+|.+|+ ++.+.+++++++++.++...+......+.+.++++.....++... ++++++++++ .+
T Consensus 309 ~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~l~i~l~~~l--i~ 383 (416)
T PRK15099 309 FTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQF-TLLTGFAHWL--IP 383 (416)
T ss_pred HHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--HH
Confidence 999999999999999865 566788999999999998888877777778888776666666554 8899999998 56
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHH
Q 010121 465 GLEVKGIWCGMLCGTILQTCVIFGIIY 491 (517)
Q Consensus 465 ~~g~~G~~~a~~i~~~~~~~~~~~~~~ 491 (517)
.+|..|+++++.+++.+..++......
T Consensus 384 ~~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 384 LHGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999988766554
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=5.8e-29 Score=250.50 Aligned_cols=387 Identities=16% Similarity=0.161 Sum_probs=338.7
Q ss_pred cCChH-HHHHHHHHHHHHHHHHHHHH-HhHHhhHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHH
Q 010121 97 HISTL-ALAAVSVENSVIAGFSFGAM-LGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFM-YIFAQQIL 173 (517)
Q Consensus 97 ~lg~~-~~a~~~~~~~i~~~~~~~~~-~gl~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~l~ 173 (517)
++|.. +..++.++..+..++...+. .++.++..|...+.. ++++++.++..++.+.+..+.+++++++ +++++++.
T Consensus 4 ~fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv 82 (451)
T PF03023_consen 4 FFGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIV 82 (451)
T ss_pred HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45654 56799999999998833443 468999999999998 8889999999999998888888888877 88999999
Q ss_pred HHc--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHhhCCC---chhH
Q 010121 174 SLI--GQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLG---LVGA 248 (517)
Q Consensus 174 ~~~--~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~l~~~li~~~~~g---~~G~ 248 (517)
+.+ +.+++..+.+..++++..+..++.++..++.+++|+++|+..+...++..++..++...++... +| +.+.
T Consensus 83 ~~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~~--~~~~~i~~l 160 (451)
T PF03023_consen 83 RLLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSNS--WGQENIYAL 160 (451)
T ss_pred HHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHh--cCchHHHHH
Confidence 887 5678899999999999999999999999999999999999999999998887776655555444 56 8899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHH
Q 010121 249 AVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGL 328 (517)
Q Consensus 249 a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 328 (517)
++|..++.++..++.+...+|.+.+.+++ +++ +.+..|++++...|..+.....++...+++.+++.++ +-.++++
T Consensus 161 a~g~~~g~~~~~l~~l~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~--~G~vs~l 236 (451)
T PF03023_consen 161 AWGVLIGAIIQFLIQLPYLRRFGFRFRPK-FDW-RDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLG--EGSVSAL 236 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCccccc-CCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--ccHHHHH
Confidence 99999999999999998888865332221 222 2256899999999999999999999999999999988 4579999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc----CcHH
Q 010121 329 SICMNILGWSN-MVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFS----SDPE 403 (517)
Q Consensus 329 ~i~~~i~~~~~-~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~----~~~~ 403 (517)
+.+.++.+++. .+..+++++..|.+++...++|.++.++..+++++....+.+|++++++.+++++++++. -|.|
T Consensus 237 ~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~ 316 (451)
T PF03023_consen 237 NYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAE 316 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHH
Confidence 99999999977 678899999999999999999999999999999999999999999999999999998874 2567
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCcchhhHHHHHHHHHHHhHHHHHHHHHhcCCChhhHHHHHHHHHHHHH
Q 010121 404 VIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQT 483 (517)
Q Consensus 404 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~i~~~~~~ 483 (517)
..+....++.+++++.++.+++..+...+++.||+|.++..++++. ++++.+.+.+ .+.+|..|+.+++.++..+..
T Consensus 317 ~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~-~lni~l~~~l--~~~~g~~Glala~sl~~~i~~ 393 (451)
T PF03023_consen 317 DTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISV-VLNIILSILL--VPFFGVAGLALATSLSAIISA 393 (451)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHH-HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999999998 8999999887 566799999999999999999
Q ss_pred HHHHHHHHhc
Q 010121 484 CVIFGIIYKT 493 (517)
Q Consensus 484 ~~~~~~~~~~ 493 (517)
++.+..++|+
T Consensus 394 ~~l~~~l~r~ 403 (451)
T PF03023_consen 394 LLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHH
Confidence 8877777665
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.98 E-value=1.8e-27 Score=235.07 Aligned_cols=419 Identities=14% Similarity=0.078 Sum_probs=347.1
Q ss_pred HHHHhHHHHHHHHHHHhHHHHHHHHHhh-cCCh-HHHHHHHHHHHHHHHHHHHHH-HhHHhhHHHHHHHHhcCCCcchHH
Q 010121 69 KLWYLAGPAIFMTICQYPLGAITQVFSG-HIST-LALAAVSVENSVIAGFSFGAM-LGMGSALETLCGQAYGAGQLDMMG 145 (517)
Q Consensus 69 ~i~~~~~p~~~~~~~~~~~~~i~~~~i~-~lg~-~~~a~~~~~~~i~~~~~~~~~-~gl~~a~~~~~~~~~g~~~~~~~~ 145 (517)
+++|.+.-.....+++.+.+++...+++ .+|. ....++.++..+.+++--.+. ..++++..|...++..+++.++.+
T Consensus 8 sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~~ 87 (518)
T COG0728 8 SLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAAR 87 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHHH
Confidence 3555666666667777778888777777 6787 466799999999998743333 347899999999998777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHc-CC--CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHH
Q 010121 146 VYLQRSWIILITTALMLMFM-YIFAQQILSLI-GQ--TQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAV 221 (517)
Q Consensus 146 ~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~-~~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 221 (517)
+..+........+.++++++ .++.+.+.+.. +. +++....+....++..|..++.++.....+++|+.+|+..+.+
T Consensus 88 ~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a~ 167 (518)
T COG0728 88 FFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPAF 167 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhhh
Confidence 77777776777777777776 77777777444 32 2333336788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHhHhhHHHHHHHHHHHHHHH
Q 010121 222 IAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVML 301 (517)
Q Consensus 222 ~~i~~~~~~i~l~~~li~~~~~g~~G~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~ 301 (517)
.++..|+.-+.....+..+......+.++++.++-+.+.++.+..++|-+...+++ +.++ -+.+|++++.-.|..+..
T Consensus 168 aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~-~~~~-~~~lk~~~~~~~p~~l~~ 245 (518)
T COG0728 168 APVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPR-FGFK-DPGLKRFLKLMLPALLGV 245 (518)
T ss_pred hHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCC-CCCC-chhHHHHHHHHHHHHHHH
Confidence 99998888886666555544334778899999999999999999999865222222 2221 158999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHH
Q 010121 302 CVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSN-MVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIG 380 (517)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~-~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~ 380 (517)
.+.++...+++.+++.+.+ -.++.++.++++.+++. .+..+++++..|.+|++..++|.++.++..++++++++++.
T Consensus 246 sisQi~lli~~~iAS~l~~--Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll~ 323 (518)
T COG0728 246 SISQINLLIDTAIASFLAE--GSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLLT 323 (518)
T ss_pred HHHHHHHHHHHHHHHhhcc--ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999974 47889999999999987 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccccccccC----cHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCcchhhHHHHHHHHHHHhHHH
Q 010121 381 LTLSLILIVTRNQYPALFSS----DPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPL 456 (517)
Q Consensus 381 ~~~~~~~~~~~~~l~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~~i~~ 456 (517)
+|.++++..+++++.+++.. +++......+.+..++++.++..+.-++...+++.+|+|+|+.+.+++. ++++.+
T Consensus 324 lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~-~~n~~l 402 (518)
T COG0728 324 LPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISL-VVNILL 402 (518)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHHH-HHHHHH
Confidence 99999999999999988732 4566888999999999999999999999999999999999999999998 899999
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 010121 457 GLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYKTN 494 (517)
Q Consensus 457 ~~~l~~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~~ 494 (517)
++.+ .+.+|..|++.+..++..+...+.++..+|+.
T Consensus 403 ~~~l--~~~~~~~giala~s~a~~~~~~ll~~~l~k~~ 438 (518)
T COG0728 403 NLLL--IPPLGHVGLALATSLAAWVNALLLYYLLRKRL 438 (518)
T ss_pred HHHH--HhhccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9766 56679999999999988887777666666554
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.96 E-value=3e-25 Score=228.70 Aligned_cols=398 Identities=12% Similarity=0.102 Sum_probs=317.8
Q ss_pred HHHHHHhHHHHHHHHHHHhHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhcCCCcchHH
Q 010121 67 GKKLWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMG 145 (517)
Q Consensus 67 ~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~~~~~g~~~~~~~~ 145 (517)
.++..+.+....++++...+.+++...+++| +|++++|.++.++.+..++......|++++.. |. +|.+ +
T Consensus 4 ~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~---~~~~--~ 74 (492)
T PRK10459 4 REKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----QR---QDIS--H 74 (492)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hc---ccCC--H
Confidence 3567888999999999999999999999995 89999999999999999886777788888752 22 1211 2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHH
Q 010121 146 VYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAA 224 (517)
Q Consensus 146 ~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i 224 (517)
+..+..+++....++++.++ +.+.+++...++ +++. ...+++..+..++..+.......++..++.+......+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~ 149 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI 149 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHH
Confidence 33456666777777776666 555555555554 4443 34566777777788888889999999999999998888
Q ss_pred HHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHhHhhHHHHHHHHHHHHHHHHHH
Q 010121 225 VALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVE 304 (517)
Q Consensus 225 ~~~~~~i~l~~~li~~~~~g~~G~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~ 304 (517)
...++..++...+.+ .++|+.+.+++..++..+..+...+..++ +.++++ .+ +++..|++++++.|...+++..
T Consensus 150 ~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~~~-~~---~~~~~k~ll~~~~~~~~~~~~~ 223 (492)
T PRK10459 150 SAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRK-IYRPAL-HF---SLASVKPNLSFGAWQTAERIIN 223 (492)
T ss_pred HHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhcc-cCCccc-ee---cHHHHHHHHhhhHHHHHHHHHH
Confidence 888887777766554 57899999999999988877654333322 222211 12 2457899999999999999999
Q ss_pred HHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHH
Q 010121 305 IWYFMALILFAGYLKNAKLSVAGLSICMNILGWSN-MVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTL 383 (517)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~-~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (517)
.+....|+.+++.+. |++++|.|+.+.++.+++. .+...++++..|.+++. ++|.++.++..++..++...+++|+
T Consensus 224 ~~~~~~d~~~lg~~l-g~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~ 300 (492)
T PRK10459 224 YLNTNIDTILIGRIL-GAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPL 300 (492)
T ss_pred HHHhcCchhhhhHhh-chHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988775 3789999999999988755 55666888999999885 5788899999999999999999999
Q ss_pred HHHHHhccccccccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCcchhhHHHHHHHHHHHhHHHHHHHHHh
Q 010121 384 SLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYL 463 (517)
Q Consensus 384 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~~i~~~~~l~~~ 463 (517)
.+++.++++++..++.+++ ++.+...++++++..++..+.......+++.||+|..+..+++.. ++.+|..+.+ .
T Consensus 301 ~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~~~i~~~~~~--~ 375 (492)
T PRK10459 301 LLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKT-FLFIPAIVIG--G 375 (492)
T ss_pred HHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHH-HHHHHHHHHH--H
Confidence 9999999999998887754 677889999999999999999999999999999999999998887 7778877766 3
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHh
Q 010121 464 VGLEVKGIWCGMLCGTILQTCVIFGIIYK 492 (517)
Q Consensus 464 ~~~g~~G~~~a~~i~~~~~~~~~~~~~~~ 492 (517)
+.+|..|+++++.+++.+..++..+...|
T Consensus 376 ~~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 376 QLAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45699999999999999988776665533
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.94 E-value=1.3e-22 Score=208.53 Aligned_cols=389 Identities=15% Similarity=0.118 Sum_probs=304.0
Q ss_pred HHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhcCCCcchH
Q 010121 66 EGKKLWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMM 144 (517)
Q Consensus 66 ~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~~~~~g~~~~~~~ 144 (517)
..+++.|.+.....+++...+.+++....++| +|++++|.++.+.++..++......|+..+....+++...++++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~ 83 (480)
T COG2244 4 LKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLL 83 (480)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHH
Confidence 55678889999999999999999999999994 89999999999999999986777799999999999988655554444
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHH
Q 010121 145 GVY-LQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIA 223 (517)
Q Consensus 145 ~~~-~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 223 (517)
... ....+......+++.........+. +++ ....+.+..+..+.........+.+|+.++.+......
T Consensus 84 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (480)
T COG2244 84 ILLSVLLLLLLALILLLLLLLIAYLLAPI------DPV----LALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSI 153 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc------Chh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Confidence 444 4444443333333333332222222 122 23446678888899999999999999999999998884
Q ss_pred HHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHhHhhHHHHHHHHHHHHHHHHH
Q 010121 224 AVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCV 303 (517)
Q Consensus 224 i~~~~~~i~l~~~li~~~~~g~~G~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~ 303 (517)
+.. ..-....+.+.. ....+..++...+..........+..+++....+..++ ..++..++.++.+.|.......
T Consensus 154 ~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~p~~~~~~~ 228 (480)
T COG2244 154 VSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPILR-FSLALLKELLRFGLPLLLSSLL 228 (480)
T ss_pred HHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccC-chhHHHHHHHHHhhHHHHHHHH
Confidence 433 111222222221 34445566666666666655555554221111111111 1357899999999999999999
Q ss_pred HHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHH
Q 010121 304 EIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTL 383 (517)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (517)
..+...+|+.+++..- +++++|.|+.+.++......+..+++++..|.+++...+++.++.++..++..++...++.|.
T Consensus 229 ~~l~~~~D~~~i~~~l-~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 307 (480)
T COG2244 229 NFLFTNIDTLLLGLFL-GPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPA 307 (480)
T ss_pred HHHHHHHHHHHHHHHh-hhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998876 388999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccccccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCcchhhHHHHHHHHHHHhHHHHHHHHHh
Q 010121 384 SLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYL 463 (517)
Q Consensus 384 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~~i~~~~~l~~~ 463 (517)
.+++.++++++..++.+++ +..+...++++++..++.++.......+++.|+++..++.+.++. ++++.+++.+ .
T Consensus 308 ~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i~~~~l~~~l--i 382 (480)
T COG2244 308 LLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISA-LLNLILNLLL--I 382 (480)
T ss_pred HHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHH-HHHHHHHhHH--H
Confidence 9999999999999887755 444888999999999999999999999999999999999999998 8888888888 5
Q ss_pred cCCChhhHHHHH
Q 010121 464 VGLEVKGIWCGM 475 (517)
Q Consensus 464 ~~~g~~G~~~a~ 475 (517)
+.+|..|+..++
T Consensus 383 ~~~g~~g~~~a~ 394 (480)
T COG2244 383 PRFGLIGAAIAT 394 (480)
T ss_pred HhhhhhhHHHHH
Confidence 667999998888
No 16
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.88 E-value=1.3e-20 Score=191.65 Aligned_cols=206 Identities=18% Similarity=0.161 Sum_probs=191.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhcCCCcc
Q 010121 63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLD 142 (517)
Q Consensus 63 ~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~~~~~g~~~~~ 142 (517)
.++..|+++|.++|.++.++.......+|+.+++++|+++++++++++++..+. +.+..|++++.+++++|++|+||+|
T Consensus 231 ~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~-~~~~~gi~~a~~~lvgq~~Ga~~~~ 309 (464)
T PRK00187 231 SRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVA-FMVPVGLSYAVTMRVGQHYGAGRLL 309 (464)
T ss_pred CHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 455789999999999999999999999999999999999999999999999988 8899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCC--CH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCch
Q 010121 143 MMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQ--TQ---EISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKI 216 (517)
Q Consensus 143 ~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~~--~~---~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~ 216 (517)
++++..+.++.++.+.++++.++ +.+.+++.+.+.. ++ |+.+.+..|+++..++.++..++.++.+++|+.||+
T Consensus 310 ~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~ 389 (464)
T PRK00187 310 EARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDA 389 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCcc
Confidence 99999999999999999988877 8889999998842 33 788899999999999999999999999999999999
Q ss_pred hHHHHHHHHHH-HHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 010121 217 MVLAVIAAVAL-LLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (517)
Q Consensus 217 ~~~~~~~i~~~-~~~i~l~~~li~~~~~g~~G~a~a~~~~~~~~~~~~~~~~~~ 269 (517)
+.+++..+... ++++++++++.+.+++|+.|+++++.+++.+..++....+++
T Consensus 390 ~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~ 443 (464)
T PRK00187 390 RTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW 443 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999986 999999999999889999999999999999988877666644
No 17
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.88 E-value=1.8e-20 Score=188.87 Aligned_cols=208 Identities=20% Similarity=0.274 Sum_probs=198.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChH
Q 010121 284 FHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPR 363 (517)
Q Consensus 284 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g~~~~~ 363 (517)
++..|+++++++|.++.++.......+|+.++++++ ++++|+-+++.++..+...+..+++.+..+.++|++|+||++
T Consensus 13 ~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~--~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 13 KKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG--AEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchH
Confidence 457899999999999999999999999999999998 789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCcchhhHH
Q 010121 364 TAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAY 443 (517)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~ 443 (517)
++++..++++.++++++++..++.+.+++++..++.+++|+.+.+..++++..++.++..++....+++++.||+|.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHh-cC-CChhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 010121 444 VNIGCYYLFGIPLGLILGYL-VG-LEVKGIWCGMLCGTILQTCVIFGIIYKTN 494 (517)
Q Consensus 444 ~~~~~~~~~~i~~~~~l~~~-~~-~g~~G~~~a~~i~~~~~~~~~~~~~~~~~ 494 (517)
+++++. ++|+.+.+++.+. .+ +|+.|+++|+.+++.+..++...++++++
T Consensus 171 ~~~~~~-~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~ 222 (455)
T COG0534 171 ILLLGN-LLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKK 222 (455)
T ss_pred HHHHHH-HHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999 9999999999877 45 99999999999999999998777776655
No 18
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.87 E-value=4.1e-20 Score=186.22 Aligned_cols=206 Identities=14% Similarity=0.118 Sum_probs=191.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHH
Q 010121 285 HSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRT 364 (517)
Q Consensus 285 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~ 364 (517)
+..|+++++++|.+++++.......+|+.+++++++ ++++|+.+++.++.++...+..+++.+..+.+++++|+||+++
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g-~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDS-PVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 467899999999999999999999999999999862 6789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCcchhhHHH
Q 010121 365 AKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYV 444 (517)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~ 444 (517)
+++..++++.++++++++..++...+.+++..+++.|+|+.+.+.+++++..++.++..+..+..+++++.||+|.+++.
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~ 164 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL 164 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 99999999999999999998888888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHh
Q 010121 445 NIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYK 492 (517)
Q Consensus 445 ~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~ 492 (517)
++++. ++++++.+++.+..++|+.|+++++.+++.+..++...++++
T Consensus 165 ~ii~~-~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 165 LVVGN-ILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHH-HHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99997 889999999988778999999999999999988775555543
No 19
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.87 E-value=5.7e-20 Score=186.95 Aligned_cols=204 Identities=18% Similarity=0.175 Sum_probs=189.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHH
Q 010121 285 HSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRT 364 (517)
Q Consensus 285 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~ 364 (517)
+..|+++++++|.+++++.......+++.+++++| ++++|+++++.++..+.+.+..+++++..+.+++++|+||+++
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG--~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~ 103 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLG--KEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRR 103 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 56899999999999999999999999999999988 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc--CcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCcchhhH
Q 010121 365 AKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFS--SDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVA 442 (517)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~ 442 (517)
+++..+.++.++++++++.+++.+++++++..+|. .|+|+.+.+..++++..++.++..++.+..+++++.||++.++
T Consensus 104 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 183 (478)
T PRK10189 104 ARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPL 183 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhH
Confidence 99999999999999999999999999999999995 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHh----cCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 010121 443 YVNIGCYYLFGIPLGLILGYL----VGLEVKGIWCGMLCGTILQTCVIFGIIY 491 (517)
Q Consensus 443 ~~~~~~~~~~~i~~~~~l~~~----~~~g~~G~~~a~~i~~~~~~~~~~~~~~ 491 (517)
+++++.. ++++++.+.+.+. +++|+.|+|+|+.+++.+..++..+.+.
T Consensus 184 ~i~~~~~-~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~ 235 (478)
T PRK10189 184 LINGGMN-ILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLM 235 (478)
T ss_pred HHHHHHH-HHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999866 8899999888753 4789999999999999998877554443
No 20
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.86 E-value=9.6e-20 Score=185.74 Aligned_cols=206 Identities=20% Similarity=0.171 Sum_probs=193.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhcCCCcc
Q 010121 63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLD 142 (517)
Q Consensus 63 ~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~~~~~g~~~~~ 142 (517)
.++..|++++.++|.+++++.......++..+++++|++++++++++.++.++. ..+..|++.+.++.++|++|+||++
T Consensus 234 ~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gl~~a~~~~v~~~~Ga~~~~ 312 (456)
T PRK01766 234 DWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLL-FMLPLSLAMALTIRVGFELGAGRTL 312 (456)
T ss_pred CHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 345789999999999999999999999999999999999999999999999988 8889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHH
Q 010121 143 MMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAV 221 (517)
Q Consensus 143 ~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 221 (517)
++++..+.++.+++.++++..++ +.+.+++.+++..|+++.+.+..|+++..+..++.++.....+++||.||++.+++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~ 392 (456)
T PRK01766 313 DARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFF 392 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHH
Confidence 99999999999999999988776 88999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 010121 222 IAAVAL-LLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (517)
Q Consensus 222 ~~i~~~-~~~i~l~~~li~~~~~g~~G~a~a~~~~~~~~~~~~~~~~~~ 269 (517)
..+.+. ++++++.+++.+..++|+.|+++++.+++++.+++..+++++
T Consensus 393 ~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~ 441 (456)
T PRK01766 393 ITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRK 441 (456)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHH
Confidence 999986 789999999988778999999999999999999988777766
No 21
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.85 E-value=1.5e-19 Score=183.44 Aligned_cols=206 Identities=14% Similarity=0.152 Sum_probs=192.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh
Q 010121 284 FHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYL-KNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHP 362 (517)
Q Consensus 284 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g~~~~ 362 (517)
++..|++++.++|.+++++...+...+|+.+++++ | ++++++++++.++..+...+..+++.+..+.+++++|+||+
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g--~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~ 85 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVG--AEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDL 85 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCH
Confidence 35779999999999999999999999999999996 5 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCcchhhH
Q 010121 363 RTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVA 442 (517)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~ 442 (517)
+++++..++++.++++++++.+++.+.+++++..+++.|+++.+.+..++++..++.++..+.....+++++.||++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 165 (453)
T PRK09575 86 EKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLAT 165 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHh
Q 010121 443 YVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYK 492 (517)
Q Consensus 443 ~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~ 492 (517)
..++.+. ++++++.+++.+.+++|+.|+++++.+++.+..++...++++
T Consensus 166 ~~~~~~~-~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~ 214 (453)
T PRK09575 166 GLMVIGA-LINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFS 214 (453)
T ss_pred HHHHHHH-HHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999887 899999999987778999999999999999988876555543
No 22
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.80 E-value=1.3e-16 Score=165.25 Aligned_cols=205 Identities=17% Similarity=0.141 Sum_probs=185.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhcCCCcch
Q 010121 64 LKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDM 143 (517)
Q Consensus 64 ~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~~~~~g~~~~~~ 143 (517)
++..|++++.+.|..++++...+...+|+.+.+++|++++++++.+..+..+....+..+++++..|.+++.+|++|+++
T Consensus 219 ~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~ 298 (502)
T TIGR01695 219 DPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNE 298 (502)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 34789999999999999999999999999886689999999999999998876344677899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCC----CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhH
Q 010121 144 MGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQ----TQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMV 218 (517)
Q Consensus 144 ~~~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~~----~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 218 (517)
.++..++++.+....+++++++ ..+.+++..++.. ++|..+.+..++++.+++.++..+.....+.+++.||++.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~ 378 (502)
T TIGR01695 299 LRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRT 378 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCcc
Confidence 9999999999999999998877 8899999988754 5677788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHHHhC
Q 010121 219 LAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSG 270 (517)
Q Consensus 219 ~~~~~i~~~~~~i~l~~~li~~~~~g~~G~a~a~~~~~~~~~~~~~~~~~~~ 270 (517)
+++..+...++|++++++++.. +|+.|+++|+.+++.+..++..++.+|+
T Consensus 379 ~~~~~~~~~~i~i~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 379 PFINSVISVVLNALLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999876 7999999999999999999888887763
No 23
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.75 E-value=1.9e-16 Score=155.52 Aligned_cols=194 Identities=20% Similarity=0.239 Sum_probs=177.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHH
Q 010121 296 ASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFS 375 (517)
Q Consensus 296 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~ 375 (517)
|.+++++.......+++.+++++| ++++++|+++.++..+...+..+++++..|.+++++|++|++++++..++.+.+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 667888888999999999999988 678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccccccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCcchhhHHHHHHHHHHHhHH
Q 010121 376 SFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIP 455 (517)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~~i~ 455 (517)
...++++.+++++++++++..+++.|++..+.+..++++++++.++.+++....+++++.||.+.....++++. +++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGN-VINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHH
Confidence 99999999999999999999999878888899999999999999999999999999999999999999999988 78888
Q ss_pred HHHHHHH-hcC-CChhhHHHHHHHHHHHHHHHHHHHHHh
Q 010121 456 LGLILGY-LVG-LEVKGIWCGMLCGTILQTCVIFGIIYK 492 (517)
Q Consensus 456 ~~~~l~~-~~~-~g~~G~~~a~~i~~~~~~~~~~~~~~~ 492 (517)
+.+.+.. ..+ +|+.|+++++.+++++..++...++++
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8887765 445 679999999999999988876655554
No 24
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.74 E-value=4.1e-18 Score=148.10 Aligned_cols=162 Identities=27% Similarity=0.452 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHH
Q 010121 296 ASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFS 375 (517)
Q Consensus 296 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~ 375 (517)
|.+++++.+...+.+++.+++++| ++++++++++.++.++..++..+++++..+.+++++|++|++++++..++++.+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 788999999999999999999996 789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccccccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCcchhhHHHHHHHHHHHhHH
Q 010121 376 SFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIP 455 (517)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~~i~ 455 (517)
+.++++++++++.++++++..+|++|+++.+.+..++++..++.++.++.....+++++.||++..++.++++.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 010121 456 LGLI 459 (517)
Q Consensus 456 ~~~~ 459 (517)
++++
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9874
No 25
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.73 E-value=2.3e-14 Score=135.77 Aligned_cols=270 Identities=18% Similarity=0.201 Sum_probs=206.8
Q ss_pred HHhHHHHHHHHHHHhHHHHHHHHHhh-cCChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhcCCCcchHHHHHH
Q 010121 71 WYLAGPAIFMTICQYPLGAITQVFSG-HISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQ 149 (517)
Q Consensus 71 ~~~~~p~~~~~~~~~~~~~i~~~~i~-~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~~~~~g~~~~~~~~~~~~ 149 (517)
.|.+.....+++...+.+++...++. .+|++++|.++...++.+++......|++++....+++... ++++.+.+..
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~--~~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKD--KKELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh--hHHHHHHHHH
Confidence 57778888999999999999999999 58999999999999999988566789999999888888743 2345555555
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHH
Q 010121 150 RSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLL 229 (517)
Q Consensus 150 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~ 229 (517)
..+...++.+++......... .++. ++.. ..+........++.........++++.++.+.....++...+.
T Consensus 80 ~~~~~~~~~~~i~~~~~~~~~----~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLIAS----FFGN-PSLS---LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLL 151 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HcCC-chHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444444444333322222 3333 3322 1222222222257778888999999999999999999999888
Q ss_pred HHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010121 230 HTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFM 309 (517)
Q Consensus 230 ~i~l~~~li~~~~~g~~G~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~ 309 (517)
..++..+++.. +.++.+..++..++..+..++..++.+|+. +.+ +...+++..|++++.+.|..+..+...+...
T Consensus 152 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (273)
T PF01943_consen 152 SLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKL-RPR---FSFFSKKFFKEILRFGLPLFLSSLLSWLYSQ 226 (273)
T ss_pred HHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccc---ccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777776664 345889999999999999888888877643 122 2222357899999999999999999999999
Q ss_pred HHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010121 310 ALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNE 356 (517)
Q Consensus 310 ~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~ 356 (517)
.|..+++.+. |++++|.|+++.++......+..++.++..|.+++.
T Consensus 227 ~d~~ii~~~~-g~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 227 IDRLIIGYFL-GPEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred hHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999887 488999999999999999999999999999999975
No 26
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.72 E-value=1.2e-14 Score=146.83 Aligned_cols=204 Identities=15% Similarity=0.116 Sum_probs=189.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhcCCCcchH
Q 010121 65 KEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMM 144 (517)
Q Consensus 65 ~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~~~~~g~~~~~~~ 144 (517)
+..|++++...|.+++.....+..++|+.+.+++++..+++++.++.+.++....+...+++...|..++...++|.++.
T Consensus 195 ~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~ 274 (451)
T PF03023_consen 195 PNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEF 274 (451)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 46889999999999999999999999999999999999999999999999885677889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcC----CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHH
Q 010121 145 GVYLQRSWIILITTALMLMFM-YIFAQQILSLIG----QTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVL 219 (517)
Q Consensus 145 ~~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~----~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 219 (517)
++.+++.+...+.+.+++++. +.+++|+++.+. .+.+-.+.....+++.++++|+..+..++...+.+++|++.+
T Consensus 275 ~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~ 354 (451)
T PF03023_consen 275 RKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTP 354 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhH
Confidence 999999999999999999877 889999998763 356667778899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHHHhC
Q 010121 220 AVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSG 270 (517)
Q Consensus 220 ~~~~i~~~~~~i~l~~~li~~~~~g~~G~a~a~~~~~~~~~~~~~~~~~~~ 270 (517)
++.++.+.++|++++.++... +|..|.++++.++.++.+++++.+++|+
T Consensus 355 ~~~~~~~~~lni~l~~~l~~~--~g~~Glala~sl~~~i~~~~l~~~l~r~ 403 (451)
T PF03023_consen 355 VRISVISVVLNIILSILLVPF--FGVAGLALATSLSAIISALLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988887 8999999999999999999999888874
No 27
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.71 E-value=4.5e-18 Score=147.87 Aligned_cols=160 Identities=24% Similarity=0.402 Sum_probs=154.5
Q ss_pred HHHHHHHHHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhcCCCcchHHHHHHHHHHHH
Q 010121 76 PAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIIL 155 (517)
Q Consensus 76 p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~ 155 (517)
|.+++++...+...+|+.+++++|++++++++++..+..+. ..+..|++++..+.++|++|++|+++.++.+++++.+.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhcccccccccceeecccccccccccccccccccccc
Confidence 88999999999999999999999999999999999999999 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHH-HHHHHH
Q 010121 156 ITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVAL-LLHTIL 233 (517)
Q Consensus 156 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~-~~~i~l 233 (517)
+++++++.++ +.+.+++.++++.++++.+.+..|+++..+..|+..+.....+++++.||++.+++..+.+. ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999999988 88999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred HHH
Q 010121 234 SWL 236 (517)
Q Consensus 234 ~~~ 236 (517)
+|+
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 875
No 28
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.68 E-value=3.3e-13 Score=134.28 Aligned_cols=205 Identities=16% Similarity=0.087 Sum_probs=187.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhcCCCcchH
Q 010121 65 KEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMM 144 (517)
Q Consensus 65 ~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~~~~~g~~~~~~~ 144 (517)
...|++.+...|..++....++..++|+.+.+.+.+...+.+..+..+.++..-.+..++++...|..|+...++|.++.
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~ 308 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF 308 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence 58899999999999999999999999999999999999999999999999885678889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcC----CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHH
Q 010121 145 GVYLQRSWIILITTALMLMFM-YIFAQQILSLIG----QTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVL 219 (517)
Q Consensus 145 ~~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~----~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 219 (517)
++..+.++.+..+..++.++. ..+++|+...+. .+++-.......+....+++++..+..++...+.+++|+|.|
T Consensus 309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP 388 (518)
T COG0728 309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTP 388 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcC
Confidence 999999999999999999887 889999998763 234444556777899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHHHhCC
Q 010121 220 AVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGA 271 (517)
Q Consensus 220 ~~~~i~~~~~~i~l~~~li~~~~~g~~G~a~a~~~~~~~~~~~~~~~~~~~~ 271 (517)
+++.+++.++|+++++.++.. +|..|.++++.++.++.+.++++.++|+.
T Consensus 389 ~~i~ii~~~~n~~l~~~l~~~--~~~~giala~s~a~~~~~~ll~~~l~k~~ 438 (518)
T COG0728 389 MKIAIISLVVNILLNLLLIPP--LGHVGLALATSLAAWVNALLLYYLLRKRL 438 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999877776 78888999999999999999988888864
No 29
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.67 E-value=1.6e-14 Score=149.02 Aligned_cols=202 Identities=13% Similarity=0.111 Sum_probs=172.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhc-CC------hHHHHHH----HHHHHHHHHHHHHHHHhHHhhHHHH
Q 010121 63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGH-IS------TLALAAV----SVENSVIAGFSFGAMLGMGSALETL 131 (517)
Q Consensus 63 ~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg------~~~~a~~----~~~~~i~~~~~~~~~~gl~~a~~~~ 131 (517)
.++..|++++.+.|.+++++...+...+|+.++++ ++ .++.+.+ +.+.++..+. ..+..+++.+..|.
T Consensus 220 ~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~p~ 298 (488)
T TIGR02900 220 GKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALVPD 298 (488)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHHHH
Confidence 45688999999999999999999999999999984 32 1222332 3445566666 66778999999999
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 010121 132 CGQAYGAGQLDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFL 210 (517)
Q Consensus 132 ~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l 210 (517)
+++..|++|+++.++..++.+.+...+++++++. ..+.++++.++..+++ +..++++.++..++..+.....+.+
T Consensus 299 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l 374 (488)
T TIGR02900 299 ISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSIL 374 (488)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988776 7888999888764433 5678999999999999999999999
Q ss_pred HHcCchhHHHHHHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 010121 211 QAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (517)
Q Consensus 211 ~~~g~~~~~~~~~i~~~~~~i~l~~~li~~~~~g~~G~a~a~~~~~~~~~~~~~~~~~~ 269 (517)
++.||++..++.++.+.++|++++++++....+|+.|+++++.+++.+..++..++.+|
T Consensus 375 ~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 375 QGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999874345899999999999999999988887765
No 30
>PRK10459 colanic acid exporter; Provisional
Probab=99.62 E-value=3e-12 Score=132.12 Aligned_cols=200 Identities=12% Similarity=0.043 Sum_probs=170.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhh-cCChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhcCCCcc
Q 010121 64 LKEGKKLWYLAGPAIFMTICQYPLGAITQVFSG-HISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLD 142 (517)
Q Consensus 64 ~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~-~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~~~~~g~~~~~ 142 (517)
++..|++++++.|...+++...+...+|+.++| .+|++++|.|+.+..+.++....+...++....|..++. ++|++
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~ 280 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTE 280 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHH
Confidence 456899999999999999999999999999999 579999999999999988763445555677778888886 67888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHH
Q 010121 143 MMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAV 221 (517)
Q Consensus 143 ~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 221 (517)
+.++.+++.+.+...+++++.+. ..++++++..+..++ ...+...++++++...+..+.......+++.||++..++
T Consensus 281 ~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~ 358 (492)
T PRK10459 281 KLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFK 358 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHH
Confidence 89999999999999889888776 788899888765432 455778899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 010121 222 IAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (517)
Q Consensus 222 ~~i~~~~~~i~l~~~li~~~~~g~~G~a~a~~~~~~~~~~~~~~~~~~ 269 (517)
.+++.+++++...+++... +|+.|+++++.+++.+...+..++..|
T Consensus 359 ~~~~~~~~~i~~~~~~~~~--~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 359 WNVFKTFLFIPAIVIGGQL--AGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888888777776654 799999999999999988888877755
No 31
>PRK15099 O-antigen translocase; Provisional
Probab=99.58 E-value=9.7e-13 Score=132.63 Aligned_cols=200 Identities=11% Similarity=0.006 Sum_probs=170.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhh-cCChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhcCCCc
Q 010121 63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSG-HISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL 141 (517)
Q Consensus 63 ~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~-~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~~~~~g~~~~ 141 (517)
+++..|++++.+.|..++++...+...+|+.+++ ++|++++|.|+.+..+...+...+..+++++..|.++++ +|+
T Consensus 210 ~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~ 286 (416)
T PRK15099 210 DNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEK 286 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCh
Confidence 4567899999999999999999999999999998 899999999999999988443678899999999999995 567
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHH
Q 010121 142 DMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA 220 (517)
Q Consensus 142 ~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 220 (517)
++.++.+++.+.....+++++.++ .++.++++.++..++ .+.+..++.+++++.++...+......+.+.++.+...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~ 364 (416)
T PRK15099 287 RDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYI 364 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888999998888888888776 789999999886543 22357788888888888777777777777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 010121 221 VIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (517)
Q Consensus 221 ~~~i~~~~~~i~l~~~li~~~~~g~~G~a~a~~~~~~~~~~~~~~~~~~ 269 (517)
...+...+++++++++++.. +|..|+++++.+++.+...+......+
T Consensus 365 ~~~~~~~~l~i~l~~~li~~--~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 365 LAEVSQFTLLTGFAHWLIPL--HGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999987 899999999999999998877655543
No 32
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.55 E-value=5.1e-11 Score=111.42 Aligned_cols=246 Identities=17% Similarity=0.178 Sum_probs=177.0
Q ss_pred HHHHHHHHhh-cCChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 010121 87 LGAITQVFSG-HISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFM 165 (517)
Q Consensus 87 ~~~i~~~~i~-~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 165 (517)
.+++-..+++ .+|++++|.++....+..+.......|+.+.... ..++|+++.++..+..+....+.+++..++
T Consensus 3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (251)
T PF13440_consen 3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAIL 77 (251)
T ss_pred HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677778 5899999999999999998855557777777543 224556666666666555444444333332
Q ss_pred HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 010121 166 YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGL 245 (517)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~l~~~li~~~~~g~ 245 (517)
...+...++ +++. ..++....+..++........+.+++.+|.+......+...++..++..++.. .+.+.
T Consensus 78 ---~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 148 (251)
T PF13440_consen 78 ---AILIAYFFG-DPEL----FWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLY-LGLNL 148 (251)
T ss_pred ---HHHHHHHhC-ChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH-HHhhH
Confidence 122222332 3332 23455666778888889999999999999999999999988888544444443 34588
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHH
Q 010121 246 VGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSV 325 (517)
Q Consensus 246 ~G~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (517)
.+..++..++..+..++.....+++ .+.++ +.+..| .++.+.|.....+........+..+++.+- +++++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l-~~~~~ 219 (251)
T PF13440_consen 149 WSILLAFIISALLALLISFYLLRRK---LRLSF----KFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFL-GPEAV 219 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc---cCCCc----hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHH
Confidence 8889998888888777666533321 11111 122334 789999999999999999999999999833 38999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 010121 326 AGLSICMNILGWSN-MVSIGMNAAVSVRTSN 355 (517)
Q Consensus 326 a~~~i~~~i~~~~~-~~~~~i~~a~~~~~s~ 355 (517)
|.|+++.++...+. .+..++++...|.+++
T Consensus 220 g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 220 GIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999888 9999999999999986
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.50 E-value=8.7e-12 Score=128.35 Aligned_cols=187 Identities=21% Similarity=0.286 Sum_probs=168.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhh-cCChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhcCCCc
Q 010121 63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSG-HISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL 141 (517)
Q Consensus 63 ~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~-~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~~~~~g~~~~ 141 (517)
.++..|++++.++|..++.+...+.+.+|+.+++ .+|++++|.|+.++.+.... ..+...++....|..++...++|+
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~-~~~~~~l~~~l~P~~s~~~~~~~~ 286 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL-LIVASALNRVLFPALSRAYAEGDR 286 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH-HHHHHHHHHHHHHHHHHHHHcCcH
Confidence 4678999999999999999999999999999999 68999999999888888877 888889999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHH
Q 010121 142 DMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA 220 (517)
Q Consensus 142 ~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 220 (517)
++.++..++.+.+....+++..+. ..+.+|+...+..++.. .+...+.+.++..++..+.......+++.|+.+..+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~--~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYA--SAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 999999999999999999999887 88888988876544332 267778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHH
Q 010121 221 VIAAVALLLHTILSWLLILKLGLGLVGAAVALNAS 255 (517)
Q Consensus 221 ~~~i~~~~~~i~l~~~li~~~~~g~~G~a~a~~~~ 255 (517)
+...++.++|++++++++.. +|..|++.++ .+
T Consensus 365 ~~~~~~~i~~~~l~~~li~~--~g~~g~~~a~-~~ 396 (480)
T COG2244 365 LISLISALLNLILNLLLIPR--FGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHHHhHHHHh--hhhhhHHHHH-HH
Confidence 99999999999999999987 7888999888 44
No 34
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=99.28 E-value=1.7e-08 Score=103.03 Aligned_cols=419 Identities=11% Similarity=0.003 Sum_probs=234.4
Q ss_pred HHhHHHHHHHHHHHhHHHHH-HHHHhhcCChHHHHHHHHHHHHHH-HHHHHHHHhHHhhHHHHHHHHhcCCCcchHHHHH
Q 010121 71 WYLAGPAIFMTICQYPLGAI-TQVFSGHISTLALAAVSVENSVIA-GFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYL 148 (517)
Q Consensus 71 ~~~~~p~~~~~~~~~~~~~i-~~~~i~~lg~~~~a~~~~~~~i~~-~~~~~~~~gl~~a~~~~~~~~~g~~~~~~~~~~~ 148 (517)
.+.+.-.++.|++..+.+++ ++.++.+++++.+|..++=..+.. -+.+.-=-++-.+....-.+...+++.++..+..
T Consensus 4 ~~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~ 83 (549)
T PF04506_consen 4 AKGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLL 83 (549)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhcc
Confidence 34566677888888888886 556666899998887744433332 1113333455555332222111111122222222
Q ss_pred HHHHHHHHHHHHHHHHHHH--hHHH----HHHHc-CCCHH---HHHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHcC
Q 010121 149 QRSWIILITTALMLMFMYI--FAQQ----ILSLI-GQTQE---ISNAAGTFATWMIPQLFAYALNFPM----VKFLQAQS 214 (517)
Q Consensus 149 ~~~l~~~~~~~~~~~~~~~--~~~~----l~~~~-~~~~~---~~~~a~~~l~~~~~~~~~~~~~~~~----~~~l~~~g 214 (517)
+....+..++++++..+.+ ...| ...+. ...++ ..+.....+.+...+.....+...+ +..+.-..
T Consensus 84 wls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~ 163 (549)
T PF04506_consen 84 WLSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKL 163 (549)
T ss_pred cccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhe
Confidence 2222223333332222211 1101 11111 11111 1111222233333444444333443 44444444
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHh-hCCCc------hhHHHHHHHHHHHHHHHHHHHHHhCC--C----CCCCCCCCH
Q 010121 215 KIMVLAVIAAVALLLHTILSWLLILK-LGLGL------VGAAVALNASWWFIDITRLLYIFSGA--C----GPTWSGFSW 281 (517)
Q Consensus 215 ~~~~~~~~~i~~~~~~i~l~~~li~~-~~~g~------~G~a~a~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~ 281 (517)
|.+.-......-.+++..+....... ++++. .-+.++..+++....+.......... . ....++...
T Consensus 164 Rv~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~ 243 (549)
T PF04506_consen 164 RVKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKISS 243 (549)
T ss_pred eeEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhccccccc
Confidence 44444444444444444333333211 11111 12345556666555543332221111 1 111111111
Q ss_pred H---hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 010121 282 K---AFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGY--LKNAKLSVAGLSICMNILGWSN-MVSIGMNAAVSVRTSN 355 (517)
Q Consensus 282 ~---~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~i~~~i~~~~~-~~~~~i~~a~~~~~s~ 355 (517)
. ....-++.++.......+++...+...-+..+++. +.. .++-|.|++++|+.+++. ++...+-.+.....++
T Consensus 244 ~~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t-~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk 322 (549)
T PF04506_consen 244 GNPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLT-FEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSK 322 (549)
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCC-HHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHH
Confidence 0 11124788999999999999999999999988888 553 678899999999999876 6667788888888888
Q ss_pred hhccCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcHHHHHHHHHHHHHHHHHHHHHhHHH
Q 010121 356 ELGAAHP---------RTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQP 426 (517)
Q Consensus 356 ~~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~ 426 (517)
...+++. ++..+.....++....+++.+...-....+.+..++.++.-....+..+++++++..++.+++.
T Consensus 323 ~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NG 402 (549)
T PF04506_consen 323 LLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAING 402 (549)
T ss_pred HhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHcc
Confidence 8765533 3355556666666666666555555555555666655433222335788999999999999999
Q ss_pred HHHHHHhccCcchhhHHHHH---HHHHHHhHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHh
Q 010121 427 VLSGVAIGAGWQATVAYVNI---GCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYK 492 (517)
Q Consensus 427 ~~~~~l~a~g~~~~~~~~~~---~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~ 492 (517)
+...+.++..+.+.....+- +.. ++.+..++.+... ++|..|..+|-.+.+.++.+.+..++++
T Consensus 403 i~EaF~~s~a~~~~l~~~~~~m~~~S-~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 403 ITEAFVFSVASESQLDRYNYWMVVFS-AIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988775543333 222 4556677777554 6899999999999999999998776654
No 35
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.19 E-value=1.7e-09 Score=108.68 Aligned_cols=204 Identities=16% Similarity=0.201 Sum_probs=185.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccCCh
Q 010121 284 FHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGW-SNMVSIGMNAAVSVRTSNELGAAHP 362 (517)
Q Consensus 284 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~-~~~~~~~i~~a~~~~~s~~~g~~~~ 362 (517)
....|++.+++.|.++..+.+.....+....++++| +.++++.+++.+..+. -+.+..++..+..+.+++++|.+++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG--~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLG--NLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcccc--chHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 467899999999999999999999999999999999 5689999999988876 4567889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCcchhhH
Q 010121 363 RTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVA 442 (517)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~ 442 (517)
+.......++.......+++.... +.+.+++...+.+|+++...+..+.++.....+...........++++++.....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~l-~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISLL-ILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHH-HHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 999999999999988888888765 5666999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 010121 443 YVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIY 491 (517)
Q Consensus 443 ~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~ 491 (517)
++..+.. ++++++.+++.+..++|..|+..+..+++.+.......+..
T Consensus 181 ~~~~~~~-~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~ 228 (473)
T KOG1347|consen 181 VIGLVAL-VLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAV 228 (473)
T ss_pred HHHHHHH-HHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHhe
Confidence 9999988 99999999999999999999999999999988877555544
No 36
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.07 E-value=2.1e-06 Score=82.07 Aligned_cols=417 Identities=11% Similarity=-0.001 Sum_probs=224.4
Q ss_pred HHHHHHHhHHHHHHHHHHHhHHHHH-HHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhcCCCcchH
Q 010121 66 EGKKLWYLAGPAIFMTICQYPLGAI-TQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMM 144 (517)
Q Consensus 66 ~~~~i~~~~~p~~~~~~~~~~~~~i-~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~~~~~g~~~~~~~ 144 (517)
......+.+.-.+..|+...+.+++ +.+.+.+++++.+|..++-..+.. .....++--.........|..+.|..
T Consensus 6 vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~----sTiLFlsREair~A~l~~gs~~~d~~ 81 (530)
T KOG2864|consen 6 VLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQ----STILFLSREAIRLAELRIGSEPADTW 81 (530)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHH----HHHHHhhHHHHHHHhccCCCCCCccH
Confidence 4445566666677777777777664 666777899999988776655543 22233333333444445444443322
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHH
Q 010121 145 GVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQE-ISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVI 222 (517)
Q Consensus 145 ~~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~-~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 222 (517)
.+ +.+..+++..++.+..+. ..+--.+.... |+. ..+.-..-+.+...+.....+...+.-..|..-+.+.-...
T Consensus 82 te-~~n~~wlS~~L~~~i~~~~i~~wl~~~~s~--d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i~ 158 (530)
T KOG2864|consen 82 TE-FINLLWLSVPLQTAINVACIYFWLGFLSSS--DEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRAIA 158 (530)
T ss_pred HH-HHHhhhhhhhHHHHHHHHHHHHHHHHhhcc--chhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 22 233344444444444322 11111111111 111 00111111222233333333334444444555555555555
Q ss_pred HHHHHHHHHHHHHHHHHhh--CCCchhHHHHHHHHHHHHHHHHHHHHHh-CC-CCCC---------CCCCCHH--hHhhH
Q 010121 223 AAVALLLHTILSWLLILKL--GLGLVGAAVALNASWWFIDITRLLYIFS-GA-CGPT---------WSGFSWK--AFHSL 287 (517)
Q Consensus 223 ~i~~~~~~i~l~~~li~~~--~~g~~G~a~a~~~~~~~~~~~~~~~~~~-~~-~~~~---------~~~~~~~--~~~~~ 287 (517)
.-+..++.-++.+...+.. .+++.--|+|.........++..++..+ ++ .+.. .++.... ....-
T Consensus 159 e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ffd 238 (530)
T KOG2864|consen 159 EGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIFFD 238 (530)
T ss_pred hHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCcccccc
Confidence 5555555544444433321 1333334444444433333322333222 22 0100 0111000 00122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-hhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccCChHHH
Q 010121 288 WSFVRLSLASAVMLCVEIWYFMALILFAGYLKN-AKLSVAGLSICMNILGWSN-MVSIGMNAAVSVRTSNELGAAHPRTA 365 (517)
Q Consensus 288 ~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~i~~~i~~~~~-~~~~~i~~a~~~~~s~~~g~~~~~~~ 365 (517)
++..+.-.....+.+..++...-+..+++.... .-.+-|.|.+++|..++.. ++...+-.......++...+++.|+.
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 456666666666777777766666665553321 0124568888988877766 66777888888888888877777766
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHHHhccccccccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCcchhhH
Q 010121 366 KLSL---VVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVA 442 (517)
Q Consensus 366 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~ 442 (517)
|+.. ...++....+++.....-....+.+..++.+.+-.-......++++++..++.+++.+..++.++.++.+...
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~ 398 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQID 398 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHH
Confidence 6554 3444444444444433333344455565554332222356789999999999999999999999988877543
Q ss_pred H---HHHHHHHHHhHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHh
Q 010121 443 Y---VNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYK 492 (517)
Q Consensus 443 ~---~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~ 492 (517)
. ..+... ++.+.+++++..+ +|..|...|-.+.+.++.+.+...+++
T Consensus 399 ~~n~~mlafS-viflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 399 KHNKFMLAFS-VIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRH 448 (530)
T ss_pred hcccchhHHH-HHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 223333 4556778888544 488999999999999998886655544
No 37
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.85 E-value=1.9e-05 Score=72.57 Aligned_cols=260 Identities=13% Similarity=0.061 Sum_probs=156.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhcC--Ch-HHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhcCCCc
Q 010121 65 KEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHI--ST-LALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL 141 (517)
Q Consensus 65 ~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~l--g~-~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~~~~~g~~~~ 141 (517)
...+.+.++-.|+.++.+...+...+-+.-+++- .+ +.+|+|+++.++.-++ ......+-+....++ ++++
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl~~V-----~s~r 81 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGLVFV-----NSKR 81 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHHHHh-----cchh
Confidence 3678899999999999999888888777777753 22 4599999999998877 556555555543333 3332
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HH-hHHHHH-HHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhH
Q 010121 142 DMMGVYLQRSWIILITTALMLMFM-YI-FAQQIL-SLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMV 218 (517)
Q Consensus 142 ~~~~~~~~~~l~~~~~~~~~~~~~-~~-~~~~l~-~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 218 (517)
++.+ .+......+.+...+..++ +- +...++ ..++.++++.+.++..+.++.+.-++.++....++++-=.+++..
T Consensus 82 srr~-~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~i 160 (345)
T PF07260_consen 82 SRRK-AVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWI 160 (345)
T ss_pred hhHH-HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeE
Confidence 2222 2222112222222221222 22 223333 356889999999999999999999999999999998886666766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-hC--CCchhHHHHHHHHHHHHHHH--HHHHHHhCCCCCCCCCCCHHhHhhHHHHHHH
Q 010121 219 LAVIAAVALLLHTILSWLLILK-LG--LGLVGAAVALNASWWFIDIT--RLLYIFSGACGPTWSGFSWKAFHSLWSFVRL 293 (517)
Q Consensus 219 ~~~~~i~~~~~~i~l~~~li~~-~~--~g~~G~a~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 293 (517)
....++...+..+++..+++.. ++ .++.--.++...+..+.+-+ +.+|..-++..+...+....+...+++++++
T Consensus 161 V~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~F 240 (345)
T PF07260_consen 161 VGSASIADVIAQVVLVAILLSMHLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLKF 240 (345)
T ss_pred eehHHHHHHHHHHHHHHHHHccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHHH
Confidence 6666666555555555555531 11 11111112222222222221 1111111111222222222334578999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-cCch---hhHHHHHHHH
Q 010121 294 SLASAVMLCVEIWYFMALILFAGY-LKNA---KLSVAGLSIC 331 (517)
Q Consensus 294 ~~p~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~a~~~i~ 331 (517)
.+|.+.........-.+.+.++++ +++. ++++|...+.
T Consensus 241 ~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ 282 (345)
T PF07260_consen 241 WWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTAT 282 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccc
Confidence 999999999999999999998888 5532 2445544333
No 38
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.50 E-value=2.3e-05 Score=66.35 Aligned_cols=79 Identities=25% Similarity=0.328 Sum_probs=73.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 010121 190 ATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (517)
Q Consensus 190 l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~l~~~li~~~~~g~~G~a~a~~~~~~~~~~~~~~~~~~ 269 (517)
+++.+++.++..+.....+.+++.||++..++..+.+.++|+++++++++. +|..|+++++.+++.+...+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~--~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPR--FGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999999999999999999999999999876 899999999999999999988888877
Q ss_pred C
Q 010121 270 G 270 (517)
Q Consensus 270 ~ 270 (517)
+
T Consensus 80 ~ 80 (146)
T PF14667_consen 80 K 80 (146)
T ss_pred H
Confidence 3
No 39
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.31 E-value=0.00016 Score=74.16 Aligned_cols=203 Identities=14% Similarity=0.052 Sum_probs=160.0
Q ss_pred HHHHHHhHHHHHHHHHHHhHHHHHHHHHhhc--C-ChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhcCCCc--
Q 010121 67 GKKLWYLAGPAIFMTICQYPLGAITQVFSGH--I-STLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL-- 141 (517)
Q Consensus 67 ~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~--l-g~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~~~~~g~~~~-- 141 (517)
-+++.+++.....+.+...+.+--|.+++.. + ..++.|.|++++++-+++.=.+..-+--+.-...++...+++.
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 3568888889999999999999999999997 4 6789999999999999887777777888887888887755432
Q ss_pred -------chHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHc
Q 010121 142 -------DMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQ 213 (517)
Q Consensus 142 -------~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~ 213 (517)
++..+.+...+.+...+++++... -..++.++++++.+.=....+...++..+..+|+.+++.+..++.++.
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 345667777777788888777766 778888888775332222234667888899999999999999999987
Q ss_pred CchhHHHH---HHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHHHhC
Q 010121 214 SKIMVLAV---IAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSG 270 (517)
Q Consensus 214 g~~~~~~~---~~i~~~~~~i~l~~~li~~~~~g~~G~a~a~~~~~~~~~~~~~~~~~~~ 270 (517)
...+.... ...+..++-+..+++++.. ++|..|..+|+++...+..++.+.++++.
T Consensus 412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 412 ASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76554443 4445567777888888876 79999999999999999999999888773
No 40
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.17 E-value=0.00066 Score=63.93 Aligned_cols=187 Identities=17% Similarity=0.223 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccCChHHHHHHHH
Q 010121 292 RLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMV-SIGMNAAVSVRTSNELGAAHPRTAKLSLV 370 (517)
Q Consensus 292 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~-~~~i~~a~~~~~s~~~g~~~~~~~~~~~~ 370 (517)
|.+...............+...+..+.- |+++.|.|+....+.++...+ ..|++++..-.+++...+ .++.++...
T Consensus 3 k~~~~~~~~~~~~~~~~~~~~~il~r~l-~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 3 KNSLWLFLSNILSALIGFITIPILARYL-GPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 3444445555545444444444444333 288999999999998887765 678888888888776543 334444444
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCcchhhHHHHHHHHH
Q 010121 371 VAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYY 450 (517)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~ 450 (517)
.......+.++.......+.. .+.. ++... ..........++.........++++.++.+.....++...
T Consensus 80 ~~~~~~~~~~~i~~~~~~~~~-----~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 149 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLIAS-----FFGN-PSLSL---ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISS- 149 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HcCC-chHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 444443333333333322222 3333 32111 1122222222567788888999999999998888888877
Q ss_pred HHhHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHh
Q 010121 451 LFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYK 492 (517)
Q Consensus 451 ~~~i~~~~~l~~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~ 492 (517)
+..+...+.+... ..+..+..++..++..+..++.....+|
T Consensus 150 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 150 LLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRR 190 (273)
T ss_pred HHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4545444444333 2358888889899888887776655553
No 41
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.02 E-value=0.0045 Score=57.34 Aligned_cols=155 Identities=12% Similarity=0.096 Sum_probs=106.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh
Q 010121 284 FHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYL-KNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHP 362 (517)
Q Consensus 284 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g~~~~ 362 (517)
....+++.++-+|..++..+..+.-++.+.-+++. .+..+.+|+|+++..+.-++..+...+-+.....+. ++.
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~-----s~r 81 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVN-----SKR 81 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhc-----chh
Confidence 35678899999999999998888888888777663 333466999999999999988888887777666553 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHhcccc-ccccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccC
Q 010121 363 RTAKLSLVVAVFSSFLIGLTLSLI-----LIVTRNQ-YPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAG 436 (517)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-l~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g 436 (517)
+ |+....++. +.+...+++ .--++.. +..++.-|+++.+.+...+.++.+..+++++.....|++.=.+
T Consensus 82 s--rr~~vl~~~---vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r 156 (345)
T PF07260_consen 82 S--RRKAVLCMA---VAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHR 156 (345)
T ss_pred h--hHHHHHHHH---HHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcc
Confidence 2 222222222 222222222 1112222 3355667899999999999999999999999999999887455
Q ss_pred cchhhHHHHHHH
Q 010121 437 WQATVAYVNIGC 448 (517)
Q Consensus 437 ~~~~~~~~~~~~ 448 (517)
++......++..
T Consensus 157 ~s~iV~~aSI~~ 168 (345)
T PF07260_consen 157 HSWIVGSASIAD 168 (345)
T ss_pred ceeEeehHHHHH
Confidence 555444444443
No 42
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=97.95 E-value=6.2e-05 Score=63.68 Aligned_cols=79 Identities=16% Similarity=0.163 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhccCcchhhHHHHHHHHHHHhHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 010121 412 TPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIY 491 (517)
Q Consensus 412 l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~ 491 (517)
+++++++.++.++......++++.||+|..+..+++.. ++++++++.+ .+++|..|+.+++.+++.+...+..+..+
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~-~v~i~~~~~l--i~~~G~~Gaa~a~~i~~~~~~~~~~~~~~ 78 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGA-IVNIILNYIL--IPRFGIYGAAIATAISEIVSFILNLWYVR 78 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999998 9999999999 67789999999999999999888777776
Q ss_pred hc
Q 010121 492 KT 493 (517)
Q Consensus 492 ~~ 493 (517)
|.
T Consensus 79 k~ 80 (146)
T PF14667_consen 79 KK 80 (146)
T ss_pred HH
Confidence 64
No 43
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.89 E-value=0.0043 Score=57.57 Aligned_cols=159 Identities=24% Similarity=0.371 Sum_probs=104.3
Q ss_pred HHHHhhcCchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010121 312 ILFAGYLKNAKLSVAGLSICMNILGWSNMV-SIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVT 390 (517)
Q Consensus 312 ~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~-~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (517)
..+...++ +++.|.|+....+..+...+ ..++.+...- ..++++++.++..+.......+..+...++....
T Consensus 9 ~~lar~l~--~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (251)
T PF13440_consen 9 ILLARYLG--PEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAILAILI 81 (251)
T ss_pred HHHHHHCC--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555 88999999999998887765 4455444433 2345666677776666655555554444432222
Q ss_pred cccccccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCcchhhHHHHHHHHHHHhHHHHHHHHHhcCCChhh
Q 010121 391 RNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKG 470 (517)
Q Consensus 391 ~~~l~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G 470 (517)
.. .+ ++++ ...++.+..+..++........+.+++.+|.+.......+.. +..+.....+... +.+..+
T Consensus 82 ~~----~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~ 150 (251)
T PF13440_consen 82 AY----FF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRS-LLRLLLLVLLLYL-GLNLWS 150 (251)
T ss_pred HH----Hh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHHHHHHHHH-HhhHHH
Confidence 22 33 3332 334566677778888889999999999999999888888887 4444343333332 238888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010121 471 IWCGMLCGTILQTCVIFG 488 (517)
Q Consensus 471 ~~~a~~i~~~~~~~~~~~ 488 (517)
..++..++..+..++...
T Consensus 151 ~~~~~~~~~~~~~~~~~~ 168 (251)
T PF13440_consen 151 ILLAFIISALLALLISFY 168 (251)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999988888887766444
No 44
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.58 E-value=0.053 Score=52.87 Aligned_cols=199 Identities=15% Similarity=0.077 Sum_probs=140.3
Q ss_pred HHHhHHHHHHHHHHHhHHHHHHHHHhhc---CChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhcCCCcc---h
Q 010121 70 LWYLAGPAIFMTICQYPLGAITQVFSGH---ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLD---M 143 (517)
Q Consensus 70 i~~~~~p~~~~~~~~~~~~~i~~~~i~~---lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~~~~~g~~~~~---~ 143 (517)
..+...-..-+.+...+.+=-|.+++.. +.-.+.|.|.+++.+-+++.-.+.--+--..-...+|...++++| +
T Consensus 241 ~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~k~ 320 (530)
T KOG2864|consen 241 LLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENVKK 320 (530)
T ss_pred HHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhHHH
Confidence 4444444555566666777777777772 455577888888777776655566666666666777766655544 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHH--
Q 010121 144 MGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA-- 220 (517)
Q Consensus 144 ~~~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~-- 220 (517)
+..++...+.+...++++.... ....++++.+++++.=....+...+++.+..+|+.+++.+..+++.+....+..-
T Consensus 321 a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~~ 400 (530)
T KOG2864|consen 321 AVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQIDKH 400 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHhc
Confidence 4556666677777777666555 6677888887765432223344678899999999999999999999877655433
Q ss_pred -HHHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHHHhC
Q 010121 221 -VIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSG 270 (517)
Q Consensus 221 -~~~i~~~~~~i~l~~~li~~~~~g~~G~a~a~~~~~~~~~~~~~~~~~~~ 270 (517)
+...+..++-++++++++.. +|..|..+|.++...+..+....++++.
T Consensus 401 n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 401 NKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred ccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455567778889999988 6779999999999988888887777764
No 45
>COG4267 Predicted membrane protein [Function unknown]
Probab=96.18 E-value=1.3 Score=42.51 Aligned_cols=341 Identities=11% Similarity=0.075 Sum_probs=175.5
Q ss_pred HHHHHHHhHHhhHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 010121 116 FSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIP 195 (517)
Q Consensus 116 ~~~~~~~gl~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~ 195 (517)
++..+..|+....++.+|...=+||.+++..-..-...+....+.++..+ +-....+.... |=...+.
T Consensus 72 fS~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~-------vf~~~~~~si~-----yk~l~~~ 139 (467)
T COG4267 72 FSQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLI-------VFFVNNQYSIV-----YKILACA 139 (467)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH-------hhhhcCchhHH-----HHHHHHH
Confidence 33556778899999999988877777777554444333333333322211 11112222221 1112223
Q ss_pred HHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 010121 196 QLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPT 275 (517)
Q Consensus 196 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~l~~~li~~~~~g~~G~a~a~~~~~~~~~~~~~~~~~~~~~~~~ 275 (517)
.....+..-....++.+.++.+...+.-..+.++..++..++-. .+..|..++..++..+.......++.|.-...+
T Consensus 140 ~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~~ 216 (467)
T COG4267 140 LFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILRYFKSSR 216 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHHhccccc
Confidence 33344444556677889999999999889999888888887765 589999999999999888888777776311111
Q ss_pred CCCCCHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHH------HHHHHHHHHHHHHHH-----HHH
Q 010121 276 WSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVA------GLSICMNILGWSNMV-----SIG 344 (517)
Q Consensus 276 ~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a------~~~i~~~i~~~~~~~-----~~~ 344 (517)
...++.- +..++.... .+......+...+++.+.=..+++.+..+ -|-+..-...+...| ...
T Consensus 217 ~i~FdFL--~~~~~y~SL----llIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~i~ 290 (467)
T COG4267 217 RIGFDFL--LYRRKYPSL----LLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFLIS 290 (467)
T ss_pred ccceehh--hhhhcchHH----HHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheeeee
Confidence 1122211 111122221 12222233333444443322221111111 122222222222222 222
Q ss_pred HHHHHHHHHHHhh----cc-------CChHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcHHHHHHHHHHHH
Q 010121 345 MNAAVSVRTSNEL----GA-------AHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTP 413 (517)
Q Consensus 345 i~~a~~~~~s~~~----g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~ 413 (517)
+-+..++.--+.+ |. ++.++.....++.+.-.+-+-...++.++++++.+...+.-++ ...+++.
T Consensus 291 lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~----~~l~lF~ 366 (467)
T COG4267 291 LETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSE----YYLDLFY 366 (467)
T ss_pred eeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH----HHHHHHH
Confidence 3333333332222 11 2234445556666666666777788888899999888876543 2444455
Q ss_pred HHHHHHHHHhHHHHHHHHHhccCcchhhHHHHHHHHHHHhHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHH
Q 010121 414 LLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCV 485 (517)
Q Consensus 414 i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~i~~~~~~~~ 485 (517)
+-.++.-+......+-.+..-..+-+..+..+..-. +.|-.+.++.... +-+..| .+..++.++...+
T Consensus 367 vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~fl-i~N~ilT~i~l~l-gp~~~g--~gff~a~fl~vlv 434 (467)
T COG4267 367 VDVLGVSCQIVFMSLLNIFLYFDYRRIALELTALFL-ISNGILTFIFLEL-GPGYYG--VGFFLASFLYVLV 434 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH-HHhHHHHHHHHHh-Ccccee--hHHHHHHHHHHHH
Confidence 555555554444444444444555554444443333 4555555544321 113333 3444555554444
No 46
>COG4267 Predicted membrane protein [Function unknown]
Probab=82.27 E-value=52 Score=32.10 Aligned_cols=134 Identities=13% Similarity=0.113 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcHHHHHHHHHHHHHHHHHH
Q 010121 340 MVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCI 419 (517)
Q Consensus 340 ~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~i~~~~~ 419 (517)
.++.+++....-.+|..+=++|.++++..+.-...+....+..++.+++. ..+++. ... -...+...
T Consensus 75 IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf~--------~~~~~s---i~y--k~l~~~~F 141 (467)
T COG4267 75 IITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVFF--------VNNQYS---IVY--KILACALF 141 (467)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhh--------hcCchh---HHH--HHHHHHHH
Confidence 45666777777777777777777777777766666666666555532221 122221 111 22334445
Q ss_pred HHHhHHHHHHHHHhccCcchhhHHHHHHHHHHHhHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHH
Q 010121 420 VINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGII 490 (517)
Q Consensus 420 ~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~i~~~~~~~~~~~~~ 490 (517)
+..+..+.....+.+.+|.+.....-.++. ++...++.++ .+.+..|...+..++..+........+
T Consensus 142 V~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~-~~sv~La~~~---~~~~ie~lLL~~~IGi~~i~~l~~~~I 208 (467)
T COG4267 142 VGMSLVWILMIFLSGLKKYKLIVLSFFIGY-VVSVLLARLF---LKSPIEGLLLTLDIGIFIILFLLNFYI 208 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH---HHhHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 556677777888999999997766666666 6666666665 345899999999999887766644433
No 47
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=75.16 E-value=1e+02 Score=31.56 Aligned_cols=17 Identities=6% Similarity=-0.167 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHhhccC
Q 010121 344 GMNAAVSVRTSNELGAA 360 (517)
Q Consensus 344 ~i~~a~~~~~s~~~g~~ 360 (517)
.++....-.++..++++
T Consensus 302 ~ig~~~~G~lsDr~~~r 318 (476)
T PLN00028 302 LFARPAGGYLSDVAARR 318 (476)
T ss_pred HHHHhhhHHHHHHHHHh
Confidence 34444444555555543
No 48
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=73.97 E-value=1.1e+02 Score=31.50 Aligned_cols=64 Identities=9% Similarity=-0.040 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHhh----CCCchhHHHHHHHHHHHHHHHHH
Q 010121 201 ALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKL----GLGLVGAAVALNASWWFIDITRL 264 (517)
Q Consensus 201 ~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~l~~~li~~~----~~g~~G~a~a~~~~~~~~~~~~~ 264 (517)
+...++..+++-.++.....+....+.+-|+....+--... +.+..|--+..++.-++.....+
T Consensus 154 ~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi 221 (495)
T KOG2533|consen 154 GVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGI 221 (495)
T ss_pred HHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHh
Confidence 34556666777777766666666555555555544443321 13455544555555555444443
No 49
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=73.50 E-value=1.5e+02 Score=32.55 Aligned_cols=16 Identities=13% Similarity=0.077 Sum_probs=7.8
Q ss_pred HHhhHHHHHHHHhcCC
Q 010121 124 MGSALETLCGQAYGAG 139 (517)
Q Consensus 124 l~~a~~~~~~~~~g~~ 139 (517)
++.-....++..+|++
T Consensus 217 iG~li~G~LsDR~GRR 232 (742)
T TIGR01299 217 VGAFFWGGLADKLGRK 232 (742)
T ss_pred HHHHHHHHHHHHhCcH
Confidence 3333444556666543
No 50
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=71.17 E-value=89 Score=29.08 Aligned_cols=33 Identities=6% Similarity=-0.018 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccCChHHHHHHHHH
Q 010121 339 NMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVV 371 (517)
Q Consensus 339 ~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~ 371 (517)
..+...++.....+.=+...++|.++.++....
T Consensus 110 ~~~~~~~~s~~~h~adk~ae~gn~k~i~~~~~~ 142 (265)
T TIGR00822 110 TIFVRTITVLFQHAADKAAKEANTAAISRLHVT 142 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHHH
Confidence 344555666677777777788898888766443
No 51
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=63.35 E-value=2.9e+02 Score=32.08 Aligned_cols=28 Identities=11% Similarity=0.035 Sum_probs=13.7
Q ss_pred HHHHHHHHHHcCchhHHHHHHHHHHHHH
Q 010121 203 NFPMVKFLQAQSKIMVLAVIAAVALLLH 230 (517)
Q Consensus 203 ~~~~~~~l~~~g~~~~~~~~~i~~~~~~ 230 (517)
.......+...++.+...+.+....+..
T Consensus 130 ~a~l~~~~~~~~~~~a~~~~~~~~~ig~ 157 (1140)
T PRK06814 130 YSILPDHLNKDELLGANALVEAGTFIAI 157 (1140)
T ss_pred HHhhHhhcCccccchhhHHHHHHHHHHH
Confidence 3344445555555555555554444333
No 52
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=60.22 E-value=1.3e+02 Score=29.78 Aligned_cols=26 Identities=8% Similarity=-0.112 Sum_probs=13.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHH
Q 010121 360 AHPRTAKLSLVVAVFSSFLIGLTLSL 385 (517)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (517)
-|.++..+..++.+...++-++...+
T Consensus 72 ~Dlr~i~~~g~~~l~~F~~~~~g~vi 97 (378)
T PF05684_consen 72 ADLRRILRLGGRLLLAFLIGAVGTVI 97 (378)
T ss_pred ccHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 35666666666555444444443333
No 53
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=58.80 E-value=14 Score=27.05 Aligned_cols=20 Identities=15% Similarity=0.076 Sum_probs=3.6
Q ss_pred HHHHHhcChHHHHHHHHHHh
Q 010121 487 FGIIYKTNWNKEAAVAGDRI 506 (517)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~ 506 (517)
+..+++.+.++++++..+|+
T Consensus 27 ~ieYrk~~rqrkId~li~RI 46 (81)
T PF00558_consen 27 YIEYRKIKRQRKIDRLIERI 46 (81)
T ss_dssp ------------CHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHH
Confidence 34445555555555444444
No 54
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=57.87 E-value=2e+02 Score=28.54 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=30.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 010121 361 HPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPA 396 (517)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 396 (517)
+.++.+++.+++...+.+......+++.+..-|+..
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999988888888777777666
No 55
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=57.14 E-value=71 Score=23.63 Aligned_cols=38 Identities=13% Similarity=-0.000 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHH
Q 010121 345 MNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLT 382 (517)
Q Consensus 345 i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 382 (517)
++......+-..+.+||++++++..+++.+++.+-.+.
T Consensus 36 ~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 36 VAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred HHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 34444556667778899999999999888877554443
No 56
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=55.43 E-value=1.8e+02 Score=27.18 Aligned_cols=33 Identities=3% Similarity=-0.180 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccCChHHHHHHHHH
Q 010121 339 NMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVV 371 (517)
Q Consensus 339 ~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~ 371 (517)
..+...++.....+.-+...++|.++.++....
T Consensus 111 ~~~~~~~~~~~~~~adk~ae~gn~k~i~~~~~~ 143 (267)
T PRK09757 111 ILFFYSAFSLFMTKADKCAKEADTAAFSRLNWT 143 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHHH
Confidence 344556666777777777888898888766444
No 57
>COG3715 ManY Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]
Probab=53.34 E-value=1.9e+02 Score=26.82 Aligned_cols=61 Identities=10% Similarity=0.067 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccccccc
Q 010121 338 SNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSF-LIGLTLSLILIVTRNQYPALF 398 (517)
Q Consensus 338 ~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~ 398 (517)
..++...+......+.=++..++|.+..++....+..... ...+|..+..++-.+.+-.++
T Consensus 109 l~~~~rt~~~~f~h~aDk~ae~gn~~~i~~~h~~~~~~~~~~~~ipaf~~~~~g~~~V~~~l 170 (265)
T COG3715 109 LTTFVRTITVGFVHRADKAAEEGNTRGIERLHIGALLLQALRIAIPAFLVAYFGSSAVQSLL 170 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3345556677777777778888999999988888775444 444444444443333333333
No 58
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=53.25 E-value=2.6e+02 Score=28.34 Aligned_cols=63 Identities=10% Similarity=0.005 Sum_probs=33.6
Q ss_pred HHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHH
Q 010121 313 LFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSL 385 (517)
Q Consensus 313 ~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (517)
.++...+++-...+.|+....+. .....|.+++..-+.++.++-+.....-..++..+..+..
T Consensus 28 ~L~~i~p~sLl~~siygl~~~~~----------~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~ 90 (432)
T PF06963_consen 28 FLISIFPGSLLPVSIYGLVRSLS----------AILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFL 90 (432)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHH----------HHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344566676555543 3446778888887666555544444444444444443333
No 59
>PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans. These are predicted to be membrane proteins, but apart from that their function is unknown.
Probab=50.80 E-value=2.1e+02 Score=26.47 Aligned_cols=80 Identities=11% Similarity=-0.054 Sum_probs=44.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCcch
Q 010121 360 AHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQA 439 (517)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~ 439 (517)
+..+..++...-+..++.+..+.-++..+.+++ ..++.++.+...-....++ +.-..++..++....-.-....+.+
T Consensus 109 ds~~Si~r~l~iT~~is~~~s~~Q~ilef~~~d--~~l~~~~~~~~~hgg~~fW-~~~s~~f~~vY~~I~~L~~~r~r~~ 185 (261)
T PF10160_consen 109 DSRSSIKRTLLITGLISLADSLTQAILEFGFGD--VPLFIENFDLFGHGGWGFW-FISSLVFALVYGFILILTPLRWRDR 185 (261)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHheeecCc--ccccCCCCCcCCcCCeehH-HHHHHHHHHHHHHHHHHHhcccccc
Confidence 455666777666777777777777777777765 5556555554444333333 3334444444443333345555555
Q ss_pred hhH
Q 010121 440 TVA 442 (517)
Q Consensus 440 ~~~ 442 (517)
.|.
T Consensus 186 LPa 188 (261)
T PF10160_consen 186 LPA 188 (261)
T ss_pred CCC
Confidence 554
No 60
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=46.62 E-value=3.6e+02 Score=28.12 Aligned_cols=47 Identities=11% Similarity=0.059 Sum_probs=30.1
Q ss_pred HHHhHHHHHHHHHHHhHHHHHHHHHhhcC--ChHHHHHHHHHHHHHHHH
Q 010121 70 LWYLAGPAIFMTICQYPLGAITQVFSGHI--STLALAAVSVENSVIAGF 116 (517)
Q Consensus 70 i~~~~~p~~~~~~~~~~~~~i~~~~i~~l--g~~~~a~~~~~~~i~~~~ 116 (517)
+..+-.-..++++...+....-..++-.+ ++..+|.+..+..+..++
T Consensus 12 Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~L 60 (524)
T PF05977_consen 12 FRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILL 60 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 34445566677777777777766666643 345667777777766655
No 61
>COG1295 Rbn Ribonuclease BN family enzyme [Replication, recombination, and repair]
Probab=34.87 E-value=4.1e+02 Score=25.35 Aligned_cols=18 Identities=6% Similarity=-0.189 Sum_probs=9.3
Q ss_pred HHHHHHhhccCChHHHHH
Q 010121 350 SVRTSNELGAAHPRTAKL 367 (517)
Q Consensus 350 ~~~~s~~~g~~~~~~~~~ 367 (517)
.--+.+.++.++.+...+
T Consensus 122 ~~~lN~i~~~~~~r~~~~ 139 (303)
T COG1295 122 RDALNKIWRVKPRRSFIR 139 (303)
T ss_pred HHHHHHHhCCCCCCchHH
Confidence 444556666665444433
No 62
>PRK01030 tetrahydromethanopterin S-methyltransferase subunit C; Provisional
Probab=34.37 E-value=3.7e+02 Score=24.72 Aligned_cols=88 Identities=14% Similarity=0.009 Sum_probs=43.0
Q ss_pred HhHHHHHHHHHhccCcchhhHHHHHHHHHHHhHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Q 010121 422 NNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYKTNWNKEAAV 501 (517)
Q Consensus 422 ~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~ 501 (517)
.+++..++..+---+|+++.+...+-+..+..+...+.=. ...|....+....++-+ .+++.++..++...++
T Consensus 176 mAIlHPFNACLGP~E~q~RTL~la~e~G~ls~ii~gi~s~--~~~~~~~~~i~iivg~i-----~W~~~y~~y~~~sk~d 248 (264)
T PRK01030 176 MAILHPFNACLGPNESQDRTLTLAVECGFLSMIIFGIASL--AFLGLAAAIISIIVGLI-----GWYYAYVKFVKLSKRD 248 (264)
T ss_pred HHhcCccccccCCCcchhHHHHHHHHHHHHHHHHHHHHHH--HhhchhhHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 3455556666777777777777766555333333332221 11144444444333322 2444445555554444
Q ss_pred HHHHhhhhCCcccCC
Q 010121 502 AGDRIRKWGGHTENE 516 (517)
Q Consensus 502 ~~~~~~~~~~~~~~~ 516 (517)
+..-.....-+++||
T Consensus 249 A~~V~~tg~lPk~ee 263 (264)
T PRK01030 249 AAAVLWTGLLPKKEE 263 (264)
T ss_pred HHHHhcCCCCCCccc
Confidence 555555555445554
No 63
>PF08627 CRT-like: CRT-like; InterPro: IPR013936 This region is found in proteins related to Plasmodium falciparum chloroquine resistance transporter (CRT).
Probab=32.36 E-value=1.8e+02 Score=23.43 Aligned_cols=28 Identities=11% Similarity=-0.006 Sum_probs=21.9
Q ss_pred HHHhHHHHHHHHHHHhHHHHHHHHHhhc
Q 010121 70 LWYLAGPAIFMTICQYPLGAITQVFSGH 97 (517)
Q Consensus 70 i~~~~~p~~~~~~~~~~~~~i~~~~i~~ 97 (517)
+-|-++++.+..++..+.+.++.++.-+
T Consensus 51 ~~ke~~~L~v~~vv~V~s~v~N~VL~K~ 78 (130)
T PF08627_consen 51 YSKENFKLLVYVVVYVVSGVINRVLYKK 78 (130)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888887764
No 64
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=31.03 E-value=1.9e+02 Score=21.30 Aligned_cols=35 Identities=11% Similarity=0.097 Sum_probs=25.6
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 010121 130 TLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMF 164 (517)
Q Consensus 130 ~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~ 164 (517)
..+-.++.+||.+++++.-+++..++.+..++..+
T Consensus 42 ~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~g~~ 76 (82)
T PF04505_consen 42 SKVRSRYAAGDYEGARRASRKAKKWSIIAIIIGIV 76 (82)
T ss_pred hhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45666777899999999988888777655544433
No 65
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=30.79 E-value=3e+02 Score=27.18 Aligned_cols=15 Identities=13% Similarity=-0.064 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 010121 373 VFSSFLIGLTLSLIL 387 (517)
Q Consensus 373 ~~~~~~~~~~~~~~~ 387 (517)
-++.+-+.+|+.+..
T Consensus 34 s~lv~~~~lP~liF~ 48 (385)
T PF03547_consen 34 SKLVFNVFLPALIFS 48 (385)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334445555554433
No 66
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=30.59 E-value=3.3e+02 Score=22.96 Aligned_cols=26 Identities=4% Similarity=-0.033 Sum_probs=15.1
Q ss_pred HHHHHHH-HHhHHHHHHHHHHHhHHHH
Q 010121 64 LKEGKKL-WYLAGPAIFMTICQYPLGA 89 (517)
Q Consensus 64 ~~~~~~i-~~~~~p~~~~~~~~~~~~~ 89 (517)
.+..+++ +..++|++++.....+...
T Consensus 59 ~RM~rRm~~~~GiP~~lG~~~f~~~y~ 85 (153)
T PF11947_consen 59 NRMLRRMAVFVGIPTALGVAVFVVFYY 85 (153)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 3455554 4566888777665544433
No 67
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=30.04 E-value=2.5e+02 Score=25.25 Aligned_cols=40 Identities=0% Similarity=0.097 Sum_probs=23.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCC
Q 010121 140 QLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQT 179 (517)
Q Consensus 140 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (517)
+++.....+..++...+++.++++++..+..++.++++.+
T Consensus 142 ~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v~ 181 (230)
T PF03904_consen 142 KYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHVD 181 (230)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhHH
Confidence 4445555555555555555555555566667777777643
No 68
>PF15349 DCA16: DDB1- and CUL4-associated factor 16
Probab=29.26 E-value=1.1e+02 Score=24.89 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=16.2
Q ss_pred CCCCCCCCCCCcchhhhhccCCC
Q 010121 4 NAKQPLISPLLEEEDQEQNRKPQ 26 (517)
Q Consensus 4 ~~~~~~~s~~~~~~~~~~~~~~~ 26 (517)
|.+.|.|-|+.++++.+..+...
T Consensus 2 gpr~pspd~lseseseee~~~ny 24 (216)
T PF15349_consen 2 GPRNPSPDPLSESESEEEENANY 24 (216)
T ss_pred CCCCCCCCcCccchhhhhhhhhh
Confidence 55667788888888877666444
No 69
>PRK01637 hypothetical protein; Reviewed
Probab=28.62 E-value=5e+02 Score=24.44 Aligned_cols=13 Identities=0% Similarity=-0.041 Sum_probs=5.4
Q ss_pred HHHHHHHhhccCC
Q 010121 349 VSVRTSNELGAAH 361 (517)
Q Consensus 349 ~~~~~s~~~g~~~ 361 (517)
..--+.+.++.++
T Consensus 112 l~~a~N~i~~~~~ 124 (286)
T PRK01637 112 IDKALNTIWRSKR 124 (286)
T ss_pred HHHHHHHHhCCCC
Confidence 3333344455443
No 70
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=28.17 E-value=3.3e+02 Score=22.13 Aligned_cols=28 Identities=25% Similarity=0.178 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010121 365 AKLSLVVAVFSSFLIGLTLSLILIVTRNQ 393 (517)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (517)
.|+..+. ...+..++..+.+++..+...
T Consensus 4 ~k~~i~~-~~iGi~ig~~i~li~~~~~~~ 31 (136)
T PF11457_consen 4 IKKIIKG-FLIGIGIGSFISLIISLFYGQ 31 (136)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 3444443 444555555555554444443
No 71
>PRK01637 hypothetical protein; Reviewed
Probab=26.52 E-value=5.5e+02 Score=24.18 Aligned_cols=11 Identities=0% Similarity=-0.130 Sum_probs=4.7
Q ss_pred HHHhhhhCCcc
Q 010121 503 GDRIRKWGGHT 513 (517)
Q Consensus 503 ~~~~~~~~~~~ 513 (517)
++..++|+|+|
T Consensus 273 ~~~~~~~~~~~ 283 (286)
T PRK01637 273 KQAAEQEEDDE 283 (286)
T ss_pred hcccccccccc
Confidence 34444444443
No 72
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=26.01 E-value=6.2e+02 Score=24.63 Aligned_cols=29 Identities=17% Similarity=0.123 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010121 362 PRTAKLSLVVAVFSSFLIGLTLSLILIVT 390 (517)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (517)
+++..+..++-++......+|......+.
T Consensus 118 ~~~~~~~~r~~l~~~~~~~~pl~~~~~~~ 146 (340)
T PF12794_consen 118 PKERVQRLRRQLRWLIWVLVPLLFISIFA 146 (340)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455566666666666665554443
No 73
>PF14184 YrvL: Regulatory protein YrvL
Probab=25.15 E-value=3.8e+02 Score=21.93 Aligned_cols=101 Identities=14% Similarity=0.161 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHH
Q 010121 149 QRSWIILITTALMLMFMYIFAQQILSLIGQTQE-ISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVAL 227 (517)
Q Consensus 149 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~ 227 (517)
.......++..++.+...+...-+++++|.+-+ ......-.+.....+.|+..+...+...+.-.+-++... .....
T Consensus 5 ~~~i~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~~--~~l~~ 82 (132)
T PF14184_consen 5 IIFIIIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRLF--ILLAF 82 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHH--HHHHH
Confidence 334444555555555556667778888876433 222222233444667777777777766666663343332 34556
Q ss_pred HHHHHHHHHHHHhhCCCchhHHHH
Q 010121 228 LLHTILSWLLILKLGLGLVGAAVA 251 (517)
Q Consensus 228 ~~~i~l~~~li~~~~~g~~G~a~a 251 (517)
.+....++..++.-+.=+.+..+.
T Consensus 83 ~id~~~t~~~i~~aD~~m~sI~is 106 (132)
T PF14184_consen 83 IIDFLFTWITIYTADELMESISIS 106 (132)
T ss_pred HHHHHHHHHHHHHHHHHhcceeeC
Confidence 778888888887555333343333
No 74
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=24.09 E-value=4.4e+02 Score=22.78 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=19.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHh
Q 010121 244 GLVGAAVALNASWWFIDITRLLYIFS 269 (517)
Q Consensus 244 g~~G~a~a~~~~~~~~~~~~~~~~~~ 269 (517)
++.|...++.+++++.+++...|..+
T Consensus 135 ~~s~s~~~~ti~yIiL~iLf~~Ya~n 160 (189)
T PF05313_consen 135 SVSGSSGAYTISYIILAILFCIYAFN 160 (189)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHheee
Confidence 44567778888888888877777665
No 75
>PRK00523 hypothetical protein; Provisional
Probab=23.72 E-value=2.1e+02 Score=20.55 Aligned_cols=32 Identities=16% Similarity=0.148 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Q 010121 468 VKGIWCGMLCGTILQTCVIFGIIYKTNWNKEA 499 (517)
Q Consensus 468 ~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~ 499 (517)
..|+|+...+-.++..++..+++.|+..+++.
T Consensus 3 ~~~l~I~l~i~~li~G~~~Gffiark~~~k~l 34 (72)
T PRK00523 3 AIGLALGLGIPLLIVGGIIGYFVSKKMFKKQI 34 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555455454444444444444444
No 76
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=22.98 E-value=3.1e+02 Score=21.97 Aligned_cols=7 Identities=14% Similarity=0.031 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 010121 442 AYVNIGC 448 (517)
Q Consensus 442 ~~~~~~~ 448 (517)
++..+.+
T Consensus 44 lL~Gi~~ 50 (118)
T PF12597_consen 44 LLYGIAG 50 (118)
T ss_pred HHHHHHH
Confidence 3333333
No 77
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=21.78 E-value=4.9e+02 Score=21.89 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=20.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010121 361 HPRTAKLSLVVAVFSSFLIGLTLSLILI 388 (517)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (517)
+.++-++..++...+++.++++......
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (163)
T PF04235_consen 9 RPEEHRKLLRRLLLIGLAVGLPLALLSA 36 (163)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777888888777777766655
No 78
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.49 E-value=3.1e+02 Score=21.56 Aligned_cols=7 Identities=29% Similarity=0.501 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 010121 454 IPLGLIL 460 (517)
Q Consensus 454 i~~~~~l 460 (517)
+.++...
T Consensus 18 i~~N~~~ 24 (108)
T PF06210_consen 18 ILLNILA 24 (108)
T ss_pred HHHHhhc
Confidence 3344443
No 79
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=20.01 E-value=9.3e+02 Score=24.50 Aligned_cols=72 Identities=14% Similarity=0.036 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCcchhhHHHH
Q 010121 366 KLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVN 445 (517)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~ 445 (517)
++.....+|...++.........---+.++.+. ...-...++.++-++-......-...|+.++-.+.+
T Consensus 359 ~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLV-----------Gs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~n 427 (449)
T KOG1304|consen 359 KKLLEYALRVFLVLLTFLIAVAVPNLALFISLV-----------GSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKN 427 (449)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHH-----------HHHHHHHHHHHccHHHHHHHhcccccCceehHHHHH
Confidence 666777777766655544333321111222221 122233334444444444444444446666656655
Q ss_pred HHH
Q 010121 446 IGC 448 (517)
Q Consensus 446 ~~~ 448 (517)
++-
T Consensus 428 i~l 430 (449)
T KOG1304|consen 428 IVL 430 (449)
T ss_pred HHH
Confidence 443
Done!