Query 010121
Match_columns 517
No_of_seqs 304 out of 1921
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 20:21:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010121.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010121hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 1.8E-48 6.3E-53 397.4 35.8 429 62-493 6-446 (460)
2 3mkt_A Multi antimicrobial ext 99.8 1.8E-19 6.1E-24 183.1 19.5 205 64-269 234-445 (460)
3 1pw4_A Glycerol-3-phosphate tr 91.9 9.5 0.00032 36.9 37.6 22 464-485 408-429 (451)
4 4aps_A DI-OR tripeptide H+ sym 89.3 17 0.0006 35.6 24.5 22 463-484 445-466 (491)
5 2k1k_A Ephrin type-A receptor 32.4 48 0.0016 19.5 3.1 20 245-264 13-32 (38)
6 3o7q_A L-fucose-proton symport 32.0 3.2E+02 0.011 25.5 34.6 40 70-109 28-69 (438)
7 2ks1_B Epidermal growth factor 30.2 96 0.0033 18.9 4.6 25 246-270 14-38 (44)
8 4hkr_A Calcium release-activat 28.6 2.7E+02 0.0091 23.5 13.6 77 323-400 58-142 (214)
9 2jwa_A Receptor tyrosine-prote 25.5 1.1E+02 0.0036 18.7 3.8 14 258-271 26-39 (44)
10 2l2t_A Receptor tyrosine-prote 23.3 1.3E+02 0.0046 18.3 4.4 8 263-270 30-37 (44)
11 2knc_B Integrin beta-3; transm 20.9 2.2E+02 0.0075 19.9 5.6 16 469-484 11-26 (79)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=1.8e-48 Score=397.39 Aligned_cols=429 Identities=23% Similarity=0.359 Sum_probs=395.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhcCCCc
Q 010121 62 EFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL 141 (517)
Q Consensus 62 ~~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~~~~~g~~~~ 141 (517)
..++..|++++.++|.+++++...+++++|+.+++++|++++|+++++.++..+. ..+..|++.+..+.++|++|++|+
T Consensus 6 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~~ 84 (460)
T 3mkt_A 6 RYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGRQ 84 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCh
Confidence 4567899999999999999999999999999999999999999999999998877 778899999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHH
Q 010121 142 DMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAV 221 (517)
Q Consensus 142 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 221 (517)
++.++.+++++.+.+++++++++++.+.++++.+++.+++..+.+..|+++..++.++..+.....+++|+.||++.+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 164 (460)
T 3mkt_A 85 HKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMV 164 (460)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 99999999999999999998877778889998888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh-h---CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCC--C-CCCCCHHhHhhHHHHHHHH
Q 010121 222 IAAVALLLHTILSWLLILK-L---GLGLVGAAVALNASWWFIDITRLLYIFSGACGP--T-WSGFSWKAFHSLWSFVRLS 294 (517)
Q Consensus 222 ~~i~~~~~~i~l~~~li~~-~---~~g~~G~a~a~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~l~~~ 294 (517)
.++++.++|+++++++++. + ++|+.|+++++.+++++..++..+++++++... + ++++.+.+++.+|++++++
T Consensus 165 ~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (460)
T 3mkt_A 165 IGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLG 244 (460)
T ss_dssp HHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHh
Confidence 9999999999999999975 4 699999999999999999999888887764221 1 2233334567899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHH
Q 010121 295 LASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVF 374 (517)
Q Consensus 295 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~ 374 (517)
.|.+++.+...+.+.+++.+++.+| ++++++|+++.++.++..++..+++++..|.+++++|++|++++++..+++.+
T Consensus 245 ~p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~ 322 (460)
T 3mkt_A 245 FPVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLM 322 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999996 78999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccccccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCcchhhHHHHHHHHHHHhH
Q 010121 375 SSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGI 454 (517)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~~i 454 (517)
+.+.++++++++++++++++..+|++|+++.+.+..++++++++.++++++.+..+++++.||+|.+++.++++.|++++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 402 (460)
T 3mkt_A 323 TGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGL 402 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh----cC-CChhhHHHHHHHHHHHHHHHHHHHHHhc
Q 010121 455 PLGLILGYL----VG-LEVKGIWCGMLCGTILQTCVIFGIIYKT 493 (517)
Q Consensus 455 ~~~~~l~~~----~~-~g~~G~~~a~~i~~~~~~~~~~~~~~~~ 493 (517)
|+.+++... ++ +|..|+|+++.+++++..++..++++|.
T Consensus 403 ~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~ 446 (460)
T 3mkt_A 403 PTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL 446 (460)
T ss_dssp HHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred HHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999766 55 8999999999999999888765555443
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.83 E-value=1.8e-19 Score=183.06 Aligned_cols=205 Identities=15% Similarity=0.114 Sum_probs=190.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhcCCCcch
Q 010121 64 LKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDM 143 (517)
Q Consensus 64 ~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~~~~~g~~~~~~ 143 (517)
++..|++++.++|.+++++...+...+|+.+++++|++++|++++++.+.++. ..+..+++++..+.+++.+|++|+++
T Consensus 234 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~-~~~~~~~~~a~~p~i~~~~g~~~~~~ 312 (460)
T 3mkt_A 234 PKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLV-FMFPMSIGAAVSIRVGHKLGEQDTKG 312 (460)
T ss_dssp TSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 34678899999999999999999999999999988999999999999999998 78899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHH
Q 010121 144 MGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVI 222 (517)
Q Consensus 144 ~~~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 222 (517)
.++..++++.+...++++++++ .++.+++..++..|++..+.+..++++..++.++.++.....+++++.||++.+++.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 392 (460)
T 3mkt_A 313 AAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHR 392 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 9999999999999999999877 889999999888888888889999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHHh----hC-CCchhHHHHHHHHHHHHHHHHHHHHHh
Q 010121 223 AAVAL-LLHTILSWLLILK----LG-LGLVGAAVALNASWWFIDITRLLYIFS 269 (517)
Q Consensus 223 ~i~~~-~~~i~l~~~li~~----~~-~g~~G~a~a~~~~~~~~~~~~~~~~~~ 269 (517)
.+++. ++++++++++.+. ++ +|+.|+++|+.+++.+.+++..++++|
T Consensus 393 ~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~ 445 (460)
T 3mkt_A 393 TFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYW 445 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987 9999999999987 67 999999999999999998877665544
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=91.94 E-value=9.5 Score=36.92 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=11.9
Q ss_pred cCCChhhHHHHHHHHHHHHHHH
Q 010121 464 VGLEVKGIWCGMLCGTILQTCV 485 (517)
Q Consensus 464 ~~~g~~G~~~a~~i~~~~~~~~ 485 (517)
...|....++...+..++..++
T Consensus 408 ~~~g~~~~~~~~~~~~~~~~~~ 429 (451)
T 1pw4_A 408 DFFGWDGGFMVMIGGSILAVIL 429 (451)
T ss_dssp HSSCSHHHHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHH
Confidence 3456666666555555554444
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=89.31 E-value=17 Score=35.59 Aligned_cols=22 Identities=5% Similarity=-0.040 Sum_probs=9.3
Q ss_pred hcCCChhhHHHHHHHHHHHHHH
Q 010121 463 LVGLEVKGIWCGMLCGTILQTC 484 (517)
Q Consensus 463 ~~~~g~~G~~~a~~i~~~~~~~ 484 (517)
..+.+....++......++..+
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~ 466 (491)
T 4aps_A 445 YNAKSEVAYFSYFGLGSVVLGI 466 (491)
T ss_dssp GGGSSTTHHHHHTHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333
No 5
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=32.44 E-value=48 Score=19.52 Aligned_cols=20 Identities=10% Similarity=-0.082 Sum_probs=9.0
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 010121 245 LVGAAVALNASWWFIDITRL 264 (517)
Q Consensus 245 ~~G~a~a~~~~~~~~~~~~~ 264 (517)
+.|+.++.+++-.+...+.+
T Consensus 13 IAGiVvG~v~gv~li~~l~~ 32 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGILV 32 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHHHHHHHH
Confidence 34455555554444443333
No 6
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=32.05 E-value=3.2e+02 Score=25.53 Aligned_cols=40 Identities=5% Similarity=0.074 Sum_probs=16.6
Q ss_pred HHHhHHHHHHHHHHHhHHHHHHHHHhhcC--ChHHHHHHHHH
Q 010121 70 LWYLAGPAIFMTICQYPLGAITQVFSGHI--STLALAAVSVE 109 (517)
Q Consensus 70 i~~~~~p~~~~~~~~~~~~~i~~~~i~~l--g~~~~a~~~~~ 109 (517)
+.....-..+..+...........+...+ ++.+.+.....
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~ 69 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSA 69 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 33333333333333344444444444444 45555444433
No 7
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=30.22 E-value=96 Score=18.94 Aligned_cols=25 Identities=8% Similarity=-0.013 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhC
Q 010121 246 VGAAVALNASWWFIDITRLLYIFSG 270 (517)
Q Consensus 246 ~G~a~a~~~~~~~~~~~~~~~~~~~ 270 (517)
.+..++-++.-.+..+..+++++++
T Consensus 14 A~gVVgGv~~~~ii~~~~~~~~RRr 38 (44)
T 2ks1_B 14 ATGMVGALLLLLVVALGIGLFMRRR 38 (44)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EeehhHHHHHHHHHHHHHHHHhhhh
Confidence 3333333333334444444555553
No 8
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=28.56 E-value=2.7e+02 Score=23.50 Aligned_cols=77 Identities=16% Similarity=0.182 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010121 323 LSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELG--------AAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQY 394 (517)
Q Consensus 323 ~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 394 (517)
.-+.+|++...+.-.+.+++.-+++.+.|.+-..-+ +.-++|.+.+.-.....+.++++++-++-+...- +
T Consensus 58 ~LLi~fav~Ttllv~vml~AlMIsTcILPnIeav~~~h~~~~v~esPH~r~~~yIE~AW~fST~lGi~LFL~evall~-W 136 (214)
T 4hkr_A 58 GMLIAFAICTTLLVAVHMLALMISTCILPNIETVSNLHSISLVHESPHERLHWYIETAWAFSTLLGLILFLLEIAILC-W 136 (214)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHTTTC----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-e
Confidence 357889999998888888888888888887765432 2346777777777777777776665554444322 3
Q ss_pred cccccC
Q 010121 395 PALFSS 400 (517)
Q Consensus 395 ~~l~~~ 400 (517)
++++..
T Consensus 137 VKF~~~ 142 (214)
T 4hkr_A 137 VKFYDL 142 (214)
T ss_dssp HHHTTT
T ss_pred EEeecC
Confidence 344443
No 9
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=25.45 E-value=1.1e+02 Score=18.74 Aligned_cols=14 Identities=7% Similarity=0.017 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHhCC
Q 010121 258 FIDITRLLYIFSGA 271 (517)
Q Consensus 258 ~~~~~~~~~~~~~~ 271 (517)
+..+....|++|++
T Consensus 26 i~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 26 VLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHhheehhh
Confidence 33444455666643
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=23.27 E-value=1.3e+02 Score=18.29 Aligned_cols=8 Identities=13% Similarity=0.160 Sum_probs=3.4
Q ss_pred HHHHHHhC
Q 010121 263 RLLYIFSG 270 (517)
Q Consensus 263 ~~~~~~~~ 270 (517)
.+++++++
T Consensus 30 ~~~~~RRR 37 (44)
T 2l2t_A 30 FAVYVRRK 37 (44)
T ss_dssp HHHHHHTT
T ss_pred HHHHhhhh
Confidence 34444443
No 11
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=20.89 E-value=2.2e+02 Score=19.86 Aligned_cols=16 Identities=6% Similarity=0.013 Sum_probs=6.1
Q ss_pred hhHHHHHHHHHHHHHH
Q 010121 469 KGIWCGMLCGTILQTC 484 (517)
Q Consensus 469 ~G~~~a~~i~~~~~~~ 484 (517)
.++..+...+-++.++
T Consensus 11 ~~Iv~gvi~gilliGl 26 (79)
T 2knc_B 11 LVVLLSVMGAILLIGL 26 (79)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3333343333333333
Done!