Query 010121
Match_columns 517
No_of_seqs 304 out of 1921
Neff 10.2
Searched_HMMs 13730
Date Mon Mar 25 20:22:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010121.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010121hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 50.4 78 0.0057 27.5 36.8 24 464-487 405-428 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 25.5 1.9E+02 0.014 24.7 19.4 26 243-268 407-432 (447)
3 d1lghb_ f.3.1.1 (B:) Light-har 7.0 2.2E+02 0.016 15.8 3.2 33 361-393 10-42 (43)
4 d1nkzb_ f.3.1.1 (B:) Light-har 5.5 2.6E+02 0.019 15.1 4.6 34 361-394 7-40 (41)
5 d2yvxa3 f.57.1.1 (A:276-448) M 4.9 6E+02 0.044 18.7 6.3 29 137-165 70-98 (173)
6 d1q90b_ f.21.1.2 (B:) Cytochro 4.3 7.4E+02 0.054 18.9 6.5 16 464-479 135-150 (212)
7 d2nwwa1 f.49.1.1 (A:12-416) Pr 3.2 1.2E+03 0.084 19.5 8.5 26 61-86 33-59 (405)
8 d2iuba2 f.17.3.1 (A:286-349) M 2.9 3.9E+02 0.028 15.7 2.4 7 470-476 41-47 (64)
9 d1jo5a_ f.3.1.1 (A:) Light-har 2.5 4E+02 0.029 15.1 1.7 32 362-393 16-47 (48)
10 d1ppjc2 f.21.1.2 (C:15-260) Mi 2.4 1.2E+03 0.087 18.0 6.2 66 416-484 74-139 (246)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=50.36 E-value=78 Score=27.55 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=13.5
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHH
Q 010121 464 VGLEVKGIWCGMLCGTILQTCVIF 487 (517)
Q Consensus 464 ~~~g~~G~~~a~~i~~~~~~~~~~ 487 (517)
...|..+..+......++..++..
T Consensus 405 ~~~g~~~~~~~~~~~~~~~~~~~~ 428 (447)
T d1pw4a_ 405 DFFGWDGGFMVMIGGSILAVILLI 428 (447)
T ss_dssp HSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHhChHHHHHHHHHHHHHHHHHHH
Confidence 455766666665555555544433
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=25.53 E-value=1.9e+02 Score=24.65 Aligned_cols=26 Identities=12% Similarity=0.170 Sum_probs=12.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHH
Q 010121 243 LGLVGAAVALNASWWFIDITRLLYIF 268 (517)
Q Consensus 243 ~g~~G~a~a~~~~~~~~~~~~~~~~~ 268 (517)
.|..+..+.......+..++......
T Consensus 407 ~g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 407 FGWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56555555555555555444444433
No 3
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=6.96 E-value=2.2e+02 Score=15.81 Aligned_cols=33 Identities=3% Similarity=0.007 Sum_probs=21.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010121 361 HPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQ 393 (517)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (517)
+-++..+.+..++.....+++..=++.+.-.|+
T Consensus 10 EA~EfH~~~~~g~~~F~~iAvvAHiLvw~wrPW 42 (43)
T d1lghb_ 10 EAIAVHDQFKTTFSAFIILAAVAHVLVWVWKPW 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345566667777777777777666666665554
No 4
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=5.52 E-value=2.6e+02 Score=15.10 Aligned_cols=34 Identities=3% Similarity=-0.030 Sum_probs=25.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010121 361 HPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQY 394 (517)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 394 (517)
+.++..+....+.+....+++..=++.+...+|+
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCccc
Confidence 3467788888888888888887777777766654
No 5
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=4.89 E-value=6e+02 Score=18.69 Aligned_cols=29 Identities=14% Similarity=0.046 Sum_probs=18.8
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 010121 137 GAGQLDMMGVYLQRSWIILITTALMLMFM 165 (517)
Q Consensus 137 g~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 165 (517)
|+-+.++..+.+.+=+..+++.++.+.++
T Consensus 70 g~i~~~~~~~~l~kE~~vgll~G~~l~~i 98 (173)
T d2yvxa3 70 RDLDLRDWRRVFLKEMGVGLLLGLTLSFL 98 (173)
T ss_dssp TCSCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34356667777777777777777666544
No 6
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.28 E-value=7.4e+02 Score=18.90 Aligned_cols=16 Identities=13% Similarity=0.324 Sum_probs=6.5
Q ss_pred cCCChhhHHHHHHHHH
Q 010121 464 VGLEVKGIWCGMLCGT 479 (517)
Q Consensus 464 ~~~g~~G~~~a~~i~~ 479 (517)
..+|-.+.|.+....+
T Consensus 135 Lpw~q~sywa~~V~~~ 150 (212)
T d1q90b_ 135 LPWDQVGYWAVKIVTG 150 (212)
T ss_dssp TTCBHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHH
Confidence 3344444444444333
No 7
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=3.21 E-value=1.2e+03 Score=19.46 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhH-HHHHHHHHHHhH
Q 010121 61 REFLKEGKKLWYLA-GPAIFMTICQYP 86 (517)
Q Consensus 61 ~~~~~~~~~i~~~~-~p~~~~~~~~~~ 86 (517)
+...+.+-+++|.. .|.++..+...+
T Consensus 33 ~~~g~lFi~lL~m~v~PLIf~sii~gi 59 (405)
T d2nwwa1 33 KPFGDLFVRLLKMLVMPIVFASLVVGA 59 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777754 555555554443
No 8
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=2.94 E-value=3.9e+02 Score=15.74 Aligned_cols=7 Identities=14% Similarity=-0.035 Sum_probs=2.3
Q ss_pred hHHHHHH
Q 010121 470 GIWCGML 476 (517)
Q Consensus 470 G~~~a~~ 476 (517)
|.|+...
T Consensus 41 ~~~~~~~ 47 (64)
T d2iuba2 41 GYPVVLA 47 (64)
T ss_dssp -CHHHHH
T ss_pred HHHHHHH
Confidence 3444333
No 9
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=2.51 E-value=4e+02 Score=15.05 Aligned_cols=32 Identities=6% Similarity=0.061 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010121 362 PRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQ 393 (517)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (517)
-++..+.+..++.....+++..=++.+.-.|+
T Consensus 16 A~E~H~~~~~g~~~F~~iAvvAH~L~w~wrPW 47 (48)
T d1jo5a_ 16 AQELHSVYMSGLWLFSAVAIVAHLAVYIWRPW 47 (48)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34555666666666666666666666555544
No 10
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.44 E-value=1.2e+03 Score=17.97 Aligned_cols=66 Identities=9% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHhccCcchhhHHHHHHHHHHHhHHHHHHHHHhcCCChhhHHHHHHHHHHHHHH
Q 010121 416 ALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTC 484 (517)
Q Consensus 416 ~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~i~~~~~~~ 484 (517)
.+..+...+...-.-+..+.++.|. +..-+.. .+.+....++++...+|-.+.|.+.++.+++..+
T Consensus 74 s~~~~~~~lHm~r~~~~~sy~~~~~--w~~G~~l-~~l~m~~af~GY~Lpw~qms~wa~~V~t~l~~~i 139 (246)
T d1ppjc2 74 SMFFICLYMHVGRGLYYGSYTFLET--WNIGVIL-LLTVMATAFMGYVLPWGQMSFWGATVITNLLSAI 139 (246)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGSHHH--HHHHHHH-HHHHHHHHHHHHHTTCBHHHHHHHHHHHGGGGGS
T ss_pred HHHHHHHHHHHHHHHHhcCccchHH--HHHHHHH-HHHHHHHHHeeccCCCcchhHHHHHHHHHHHHHH
Done!