BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010122
(517 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZKG2|BRD7_CHICK Bromodomain-containing protein 7 OS=Gallus gallus GN=BRD7 PE=2 SV=1
Length = 651
Score = 41.2 bits (95), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 6/53 (11%)
Query: 2 FGCILTQKDVF-LICSNAMQYNAPDTIYFRQARSIHE-----LAKKNFENLRQ 48
+ I KD F L+C+NAM YN PDTIY++ A+ + L+++ ++L+Q
Sbjct: 190 YQSIEELKDNFKLMCTNAMTYNKPDTIYYKAAKKLLHSGMKILSQERIQSLKQ 242
>sp|Q3UQU0|BRD9_MOUSE Bromodomain-containing protein 9 OS=Mus musculus GN=Brd9 PE=2 SV=1
Length = 596
Score = 39.7 bits (91), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 8 QKDVFLICSNAMQYNAPDTIYFRQARSI 35
+ D L+C NAM YN PDT+Y++ A+ I
Sbjct: 202 KADFKLMCDNAMTYNRPDTVYYKLAKKI 229
>sp|Q9H8M2|BRD9_HUMAN Bromodomain-containing protein 9 OS=Homo sapiens GN=BRD9 PE=1 SV=2
Length = 597
Score = 39.7 bits (91), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 8 QKDVFLICSNAMQYNAPDTIYFRQARSI 35
+ D L+C NAM YN PDT+Y++ A+ I
Sbjct: 202 KADFKLMCDNAMTYNRPDTVYYKLAKKI 229
>sp|Q5R8B0|BRD7_PONAB Bromodomain-containing protein 7 OS=Pongo abelii GN=BRD7 PE=2 SV=1
Length = 651
Score = 39.3 bits (90), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 6/56 (10%)
Query: 2 FGCILTQKDVF-LICSNAMQYNAPDTIYFRQARSIHE-----LAKKNFENLRQDSD 51
+ I KD F L+C+NAM YN P+TIY++ A+ + L+++ ++L+Q D
Sbjct: 190 YQSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKLLHSGMKILSQERIQSLKQSID 245
>sp|Q9NPI1|BRD7_HUMAN Bromodomain-containing protein 7 OS=Homo sapiens GN=BRD7 PE=1 SV=1
Length = 651
Score = 39.3 bits (90), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 6/56 (10%)
Query: 2 FGCILTQKDVF-LICSNAMQYNAPDTIYFRQARSIHE-----LAKKNFENLRQDSD 51
+ I KD F L+C+NAM YN P+TIY++ A+ + L+++ ++L+Q D
Sbjct: 190 YQSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKLLHSGMKILSQERIQSLKQSID 245
>sp|O88665|BRD7_MOUSE Bromodomain-containing protein 7 OS=Mus musculus GN=Brd7 PE=1 SV=1
Length = 651
Score = 39.3 bits (90), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 6/56 (10%)
Query: 2 FGCILTQKDVF-LICSNAMQYNAPDTIYFRQARSIHE-----LAKKNFENLRQDSD 51
+ I KD F L+C+NAM YN P+TIY++ A+ + L+++ ++L+Q D
Sbjct: 190 YQSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKLLHSGMKILSQERIQSLKQSID 245
>sp|Q7ZUF2|BRD9_DANRE Bromodomain-containing protein 9 OS=Danio rerio GN=brd9 PE=2 SV=1
Length = 631
Score = 38.1 bits (87), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 12/79 (15%)
Query: 10 DVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQDS-----DDNEPETKVVR--- 61
D L+C NAM YN P+T+Y++ A+ +L F+ + + + DD PE V
Sbjct: 234 DFKLMCDNAMVYNRPETVYYKAAK---KLLHTGFKMMSKQAAILGDDDIAPEEPVTEMMP 290
Query: 62 -RGRPPTKNFKKPLGRPSL 79
P K+ K+P+ P +
Sbjct: 291 IHTEYPKKSKKQPVKEPII 309
>sp|A0QL48|RPOC_MYCA1 DNA-directed RNA polymerase subunit beta' OS=Mycobacterium avium
(strain 104) GN=rpoC PE=3 SV=1
Length = 1316
Score = 37.0 bits (84), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 71/175 (40%), Gaps = 31/175 (17%)
Query: 251 APQRPLLLSSATVGLPSSSQPSLIPE-NLSSASTHSTIELKGDKLTERPEAEDSSEKPGP 309
A R L+LSS + P+S +P +P ++ + + T E++GDK RP A+D+ E
Sbjct: 553 AEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGEYRPAAKDTPE---- 608
Query: 310 STQSSLDGHFKKPNTSSLLVVNRFSEPAKEKAEIIEGLKSQLNLVNSSMGAINTRPPFQI 369
V +S PA+ G+ S + + + RPP +I
Sbjct: 609 --------------------VGVYSSPAEAIMAADRGVLSVRAKIKVRLTQL--RPPAEI 646
Query: 370 HQNSVIRPGMNGFNGTYGFNMPSQMGK-LIGAAGPAGFSFQSPQMVDRISRTDTN 423
G NG+ + + +G+ L P G+ F + QM ++ + N
Sbjct: 647 EAELF---GANGWQPGDAWMAETTLGRVLFNELLPVGYPFVNKQMHKKVQASIIN 698
>sp|Q6NVM8|BRD9_XENTR Bromodomain-containing protein 9 OS=Xenopus tropicalis GN=brd9 PE=2
SV=1
Length = 596
Score = 36.2 bits (82), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 10 DVFLICSNAMQYNAPDTIYFRQARSI 35
D L+C NAM YN P+T+Y++ A+ +
Sbjct: 216 DFKLMCDNAMTYNRPETVYYKLAKKL 241
>sp|A0PM25|RPOC_MYCUA DNA-directed RNA polymerase subunit beta' OS=Mycobacterium ulcerans
(strain Agy99) GN=rpoC PE=3 SV=1
Length = 1316
Score = 35.8 bits (81), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 35/177 (19%)
Query: 251 APQRPLLLSSATVGLPSSSQPSLIPE-NLSSASTHSTIELKGDKLTERPEAEDSSEKPGP 309
A R L+LSS + P+S +P +P ++ + + T E++GDK +P +DS E
Sbjct: 553 AEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQPAVQDSPET--- 609
Query: 310 STQSSLDGHFKKPNTSSLLVVNR--FSEPAKEKAEIIEGLKSQLNLVNSSMGAINTRPPF 367
G + P +++ +R S AK K + +QL RPP
Sbjct: 610 -------GVYSSP-AEAIMAADRGVLSVRAKIKVRL-----TQL------------RPPA 644
Query: 368 QIHQNSVIRPGMNGFNGTYGFNMPSQMGK-LIGAAGPAGFSFQSPQMVDRISRTDTN 423
+I G NG+ + + +G+ L P G++F + QM ++ N
Sbjct: 645 EIEDELF---GHNGWQPGDAWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIIN 698
>sp|Q6GLP7|BRD9_XENLA Bromodomain-containing protein 9 OS=Xenopus laevis GN=brd9 PE=2
SV=1
Length = 527
Score = 35.8 bits (81), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 10 DVFLICSNAMQYNAPDTIYFRQARSI 35
D L+C NAM YN P+T+Y++ A+ +
Sbjct: 146 DFKLMCDNAMTYNRPETVYYKLAKKL 171
>sp|B2HSJ4|RPOC_MYCMM DNA-directed RNA polymerase subunit beta' OS=Mycobacterium marinum
(strain ATCC BAA-535 / M) GN=rpoC PE=3 SV=1
Length = 1316
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 35/177 (19%)
Query: 251 APQRPLLLSSATVGLPSSSQPSLIPE-NLSSASTHSTIELKGDKLTERPEAEDSSEKPGP 309
A R L+LSS + P+S +P +P ++ + + T E++GDK +P +DS E
Sbjct: 553 AEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQPAGQDSPET--- 609
Query: 310 STQSSLDGHFKKPNTSSLLVVNR--FSEPAKEKAEIIEGLKSQLNLVNSSMGAINTRPPF 367
G + P +++ +R S AK K + +QL RPP
Sbjct: 610 -------GVYSSP-AEAIMAADRGVLSVRAKIKVRL-----TQL------------RPPA 644
Query: 368 QIHQNSVIRPGMNGFNGTYGFNMPSQMGK-LIGAAGPAGFSFQSPQMVDRISRTDTN 423
+I G NG+ + + +G+ L P G++F + QM ++ N
Sbjct: 645 EIEDALF---GHNGWQPGDAWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIIN 698
>sp|Q9ULD4|BRPF3_HUMAN Bromodomain and PHD finger-containing protein 3 OS=Homo sapiens
GN=BRPF3 PE=1 SV=2
Length = 1205
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 8 QKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQDSDD 52
++D LI +N M+YNA DTI+ R A + +L + R+ +++
Sbjct: 655 EEDFNLIVTNCMKYNAKDTIFHRAAVRLRDLGGAILRHARRQAEN 699
>sp|P55201|BRPF1_HUMAN Peregrin OS=Homo sapiens GN=BRPF1 PE=1 SV=2
Length = 1214
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 8 QKDVFLICSNAMQYNAPDTIYFRQARSIHE 37
++D LI SN ++YNA DTI++R A + E
Sbjct: 694 EEDFNLIVSNCLKYNAKDTIFYRAAVRLRE 723
>sp|A6VI14|DP2L_METM7 DNA polymerase II large subunit OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=polC PE=3 SV=1
Length = 1131
Score = 33.1 bits (74), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 339 EKAEIIEGLKSQLNLVNSSMGAINTRPPFQIHQNSVIRPG 378
EK +I+E ++ +L ++M INT PF+I +N+ I G
Sbjct: 572 EKRDIVEEIEEKLQNTKNNMHFINTIAPFEIRRNAYIYVG 611
>sp|A4G0G9|DP2L_METM5 DNA polymerase II large subunit OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=polC PE=3 SV=1
Length = 1131
Score = 33.1 bits (74), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 339 EKAEIIEGLKSQLNLVNSSMGAINTRPPFQIHQNSVIRPG 378
EK +++E ++ +L ++M INT PF+I +N+ I G
Sbjct: 572 EKQDVVEDIEEKLQNTKNNMHFINTIAPFEIRRNAYIYVG 611
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.130 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 203,234,842
Number of Sequences: 539616
Number of extensions: 8980317
Number of successful extensions: 20654
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 20595
Number of HSP's gapped (non-prelim): 94
length of query: 517
length of database: 191,569,459
effective HSP length: 122
effective length of query: 395
effective length of database: 125,736,307
effective search space: 49665841265
effective search space used: 49665841265
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)