Query 010122
Match_columns 517
No_of_seqs 126 out of 141
Neff 3.2
Searched_HMMs 46136
Date Thu Mar 28 21:18:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010122.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010122hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0955 PHD finger protein BR1 99.7 3.8E-18 8.3E-23 192.3 8.2 234 2-252 621-870 (1051)
2 cd05513 Bromo_brd7_like Bromod 98.9 8.8E-10 1.9E-14 94.9 4.1 41 3-43 58-98 (98)
3 cd05512 Bromo_brd1_like Bromod 98.8 1.7E-09 3.6E-14 92.8 3.3 42 2-43 57-98 (98)
4 cd05492 Bromo_ZMYND11 Bromodom 98.6 4.8E-08 1.1E-12 86.2 5.6 47 2-48 62-108 (109)
5 cd05507 Bromo_brd8_like Bromod 98.6 6.1E-08 1.3E-12 83.7 5.1 45 2-46 59-103 (104)
6 cd05510 Bromo_SPT7_like Bromod 98.6 7.6E-08 1.7E-12 84.7 5.4 45 3-47 65-110 (112)
7 cd05511 Bromo_TFIID Bromodomai 98.5 5.2E-08 1.1E-12 85.3 3.5 50 2-51 56-105 (112)
8 cd05509 Bromo_gcn5_like Bromod 98.5 1.4E-07 3E-12 80.1 5.3 44 3-46 58-101 (101)
9 cd05524 Bromo_polybromo_I Brom 98.5 2E-07 4.3E-12 81.9 5.9 47 2-48 64-110 (113)
10 cd05508 Bromo_RACK7 Bromodomai 98.5 1.3E-07 2.9E-12 81.6 4.5 41 2-42 58-98 (99)
11 cd05504 Bromo_Acf1_like Bromod 98.5 2.4E-07 5.1E-12 81.7 5.5 45 3-47 69-113 (115)
12 cd05497 Bromo_Brdt_I_like Brom 98.4 3.5E-07 7.7E-12 79.7 5.2 44 2-45 63-106 (107)
13 cd05495 Bromo_cbp_like Bromodo 98.4 4.4E-07 9.6E-12 79.1 5.6 45 2-46 62-106 (108)
14 smart00297 BROMO bromo domain. 98.4 4.2E-07 9.2E-12 76.1 5.3 43 3-45 64-106 (107)
15 cd05529 Bromo_WDR9_I_like Brom 98.4 4E-07 8.7E-12 81.6 4.8 43 3-45 85-127 (128)
16 cd05520 Bromo_polybromo_III Br 98.4 4.6E-07 1E-11 78.5 4.8 39 2-40 62-100 (103)
17 cd05516 Bromo_SNF2L2 Bromodoma 98.3 5.9E-07 1.3E-11 78.1 5.2 42 3-44 64-105 (107)
18 cd05501 Bromo_SP100C_like Brom 98.3 7.5E-07 1.6E-11 78.0 5.4 42 3-45 57-98 (102)
19 cd05502 Bromo_tif1_like Bromod 98.3 8.8E-07 1.9E-11 76.7 5.5 44 3-46 63-106 (109)
20 cd05519 Bromo_SNF2 Bromodomain 98.3 7E-07 1.5E-11 76.7 4.5 41 3-43 63-103 (103)
21 cd04369 Bromodomain Bromodomai 98.3 9.7E-07 2.1E-11 70.6 4.5 41 2-42 58-98 (99)
22 cd05525 Bromo_ASH1 Bromodomain 98.3 9.8E-07 2.1E-11 77.0 4.8 37 2-38 64-100 (106)
23 cd05505 Bromo_WSTF_like Bromod 98.3 8.9E-07 1.9E-11 76.1 4.5 39 3-41 57-95 (97)
24 cd05518 Bromo_polybromo_IV Bro 98.3 9.7E-07 2.1E-11 76.6 4.7 38 2-39 62-99 (103)
25 PF00439 Bromodomain: Bromodom 98.3 7.7E-07 1.7E-11 71.5 3.8 33 2-34 52-84 (84)
26 cd05528 Bromo_AAA Bromodomain; 98.3 1.4E-06 2.9E-11 76.8 5.3 45 2-46 59-107 (112)
27 cd05515 Bromo_polybromo_V Brom 98.2 1.3E-06 2.8E-11 75.6 5.0 41 2-42 62-102 (105)
28 cd05503 Bromo_BAZ2A_B_like Bro 98.2 1.6E-06 3.5E-11 73.8 4.9 40 2-41 56-95 (97)
29 cd05521 Bromo_Rsc1_2_I Bromodo 98.2 1.7E-06 3.7E-11 75.6 5.0 41 2-42 61-101 (106)
30 cd05517 Bromo_polybromo_II Bro 98.2 1.6E-06 3.5E-11 75.1 4.3 36 3-38 63-98 (103)
31 cd05499 Bromo_BDF1_2_II Bromod 98.2 2E-06 4.3E-11 73.5 4.5 40 2-41 61-100 (102)
32 cd05498 Bromo_Brdt_II_like Bro 98.2 2E-06 4.4E-11 73.2 4.5 39 3-41 62-100 (102)
33 cd05500 Bromo_BDF1_2_I Bromodo 98.2 2.1E-06 4.5E-11 73.7 4.5 39 3-41 63-101 (103)
34 cd05506 Bromo_plant1 Bromodoma 98.1 2.8E-06 6.2E-11 71.8 4.9 38 2-39 58-95 (99)
35 cd05526 Bromo_polybromo_VI Bro 98.1 5.8E-06 1.3E-10 73.5 5.6 46 2-47 63-108 (110)
36 cd05522 Bromo_Rsc1_2_II Bromod 98.1 5.4E-06 1.2E-10 71.8 4.9 39 3-41 64-102 (104)
37 cd05496 Bromo_WDR9_II Bromodom 98.0 8.1E-06 1.8E-10 72.9 5.5 46 3-48 62-108 (119)
38 KOG1474 Transcription initiati 97.8 2.2E-05 4.8E-10 86.5 6.2 57 2-58 280-336 (640)
39 KOG1828 IRF-2-binding protein 97.4 6.3E-05 1.4E-09 79.2 2.0 37 5-41 266-302 (418)
40 COG5076 Transcription factor i 97.4 0.00019 4.1E-09 73.7 4.8 44 3-46 205-248 (371)
41 cd05491 Bromo_TBP7_like Bromod 96.7 0.00074 1.6E-08 61.4 1.7 26 3-28 81-106 (119)
42 PF12024 DUF3512: Domain of un 96.1 0.0044 9.6E-08 62.2 3.3 85 149-234 89-185 (245)
43 KOG1828 IRF-2-binding protein 96.0 0.0013 2.8E-08 69.6 -1.1 42 2-43 75-116 (418)
44 KOG1827 Chromatin remodeling c 92.1 0.13 2.8E-06 57.7 3.6 38 2-39 114-151 (629)
45 KOG0008 Transcription initiati 91.6 0.13 2.9E-06 61.6 3.2 41 3-43 1439-1479(1563)
46 KOG1472 Histone acetyltransfer 89.8 0.16 3.4E-06 57.9 1.6 41 3-43 663-703 (720)
47 KOG0386 Chromatin remodeling c 66.3 5.7 0.00012 47.5 3.7 45 3-47 1087-1131(1157)
48 KOG0008 Transcription initiati 56.7 11 0.00023 46.5 3.8 40 4-43 1319-1358(1563)
49 KOG1472 Histone acetyltransfer 23.2 55 0.0012 38.2 2.3 33 3-35 343-375 (720)
50 KOG1827 Chromatin remodeling c 23.0 33 0.00072 39.3 0.6 30 8-37 3-32 (629)
No 1
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=99.73 E-value=3.8e-18 Score=192.25 Aligned_cols=234 Identities=23% Similarity=0.227 Sum_probs=162.1
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCC-cc--------ccccccCCCCCCCCCC
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQDSDDNE-PE--------TKVVRRGRPPTKNFKK 72 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~Lr~~~e~~E-~e--------~k~~rr~rppkk~~KK 72 (517)
.+||+||+||+|||.|||.||..||||||+|++++++++++|+++|++.+..+ .+ +.+.+..++..+..++
T Consensus 621 ~tle~ieed~~l~~~nc~~yn~~dtv~~r~av~~~e~~~~~~~~arke~e~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1051)
T KOG0955|consen 621 STLEPIEEDVNLIVSNCMEYNAKDTVYYRAAVRLRELIKKDFRNARKEPESEGLLDRESLSHHDHLVKKLERPYRPNLWA 700 (1051)
T ss_pred hhhhHHHHhHhHhHhHHHHhhccCeehHhhhHHHHhhhhhHHHhcccchhhhcccchhhhcccchhhhhhccCCcccccc
Confidence 47999999999999999999999999999999999999999999999998665 22 2244556666666777
Q ss_pred CCCCCcccccCCCCCCccccccC-CCCccc-ccC-CCCCCCCCCCCCCcccccccccCCCCcccccccccccccc--ccc
Q 010122 73 PLGRPSLERARSDFSSDVTLASG-AENTAL-TNR-DLGNGTPHLEKSGFTDSSRRFSGSWNDLYTGCLAENKLER--NDE 147 (517)
Q Consensus 73 ~~~~~~~E~~gsd~SSgatLAt~-g~~~~~-sn~-~~~~~~~~~~k~~~~d~~~~~~~~rne~~~~~~~~~~~e~--~ee 147 (517)
++........-.+++...-++.. +++... +.. ++++.. + .-..+ .+-+| .-.|.+. .-|. ..+
T Consensus 701 ~e~~~v~~e~~~~~~~e~~~~~~~~~~~~~~a~~~~~~~~~----~---~~~~~-~~~s~---~r~~~~~-~~e~~~~~~ 768 (1051)
T KOG0955|consen 701 PEEPQVDLETFINLSKEHDLKIPLDKNEKKKATKLSIPRNR----D---SRIIR-KEKSR---LRKCGIV-DTETSGSPS 768 (1051)
T ss_pred ccccccccccccccChhhhhccccccchhhhhhhccccccc----c---cccch-hhHHH---HhhccCc-CccccCCCC
Confidence 76655544444555544433322 111100 000 111111 0 00000 00000 0001110 0010 001
Q ss_pred c--ccccCCcccCCCcccccccccccccccccccccCCceeeeccCccceeEEeccCCchhhHHHHHHHHHhhChHHHHH
Q 010122 148 V--SLSKGYSMKHGKKQVVLDENRRNTYKQFHQSLRESSVLTTFDADKKQLMTVGLHSEHGYTRSLARFAANLGPVAWKI 225 (517)
Q Consensus 148 ~--s~~kG~s~K~GkKp~~vDE~RR~TYk~~~ss~~e~svft~~~~e~KqLV~VGlq~E~sYARSLARFAAdLGPvaW~I 225 (517)
+ +..+++ .|+|.+. .+++.+|.+..++..++++++.+..+.|++-|+++-.+.+|+||+++.+++++++||.+
T Consensus 769 ~p~~~~~~~-~~~~~~~----~~~~~~~~~~~s~p~~~~~~sp~~~~~~~~~p~~l~~~s~~~~sn~~l~~n~t~~~~~~ 843 (1051)
T KOG0955|consen 769 IPSGGEKTV-KKDGLNS----KNLKMSSDQALSSPPSEPLGSPYNDSVKGVKPSVLLEKSGLLRSNANLSQNPTASANNL 843 (1051)
T ss_pred CCCccccch-hcccccc----cccccccchhhcCCCCCCCCCCccccccccCchhhHhhccccccccccccCCCcccccc
Confidence 1 123444 5666654 68999999987778899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCccCCcccccCCCCC
Q 010122 226 AARRIERCLPAGVRFGPGWVVENDLAP 252 (517)
Q Consensus 226 AskRIe~~LP~g~~FG~GWVgE~e~~p 252 (517)
|+.+++.+++.+..||.||+++....+
T Consensus 844 ~~~~~~~~~~~~~~~g~g~~~~tP~~~ 870 (1051)
T KOG0955|consen 844 ASTSCSVTKATFTGNGVGGDVKTPKRP 870 (1051)
T ss_pred cccccccccCCccCCCCCccccCCCCc
Confidence 999999999999999999976665533
No 2
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.92 E-value=8.8e-10 Score=94.86 Aligned_cols=41 Identities=37% Similarity=0.623 Sum_probs=39.3
Q ss_pred ChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHH
Q 010122 3 GCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNF 43 (517)
Q Consensus 3 sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f 43 (517)
++++|++||.|||+||+.||.++|++|++|.+|++.|++++
T Consensus 58 s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~~~~~~ 98 (98)
T cd05513 58 SIEEFKDDFKLMCENAMKYNKPDTIYYKAAKKLLHSGMKIL 98 (98)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhhhhC
Confidence 78999999999999999999999999999999999999864
No 3
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.84 E-value=1.7e-09 Score=92.77 Aligned_cols=42 Identities=29% Similarity=0.360 Sum_probs=39.3
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHH
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNF 43 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f 43 (517)
-+++||++||.||+.||+.||.+||++|+.|.+|+++|+.++
T Consensus 57 ~s~~ef~~D~~li~~Na~~yN~~~s~~~~~A~~l~~~~~~~~ 98 (98)
T cd05512 57 RTLEDFEADFNLIINNCLAYNAKDTIFYRAAVRLRDQGGAIL 98 (98)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhcccC
Confidence 378999999999999999999999999999999999998763
No 4
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.62 E-value=4.8e-08 Score=86.15 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=44.1
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhc
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQ 48 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~Lr~ 48 (517)
-+++||+.||.||++||+.||.+||++|++|+.|.+-+...++.|+.
T Consensus 62 ~s~~ef~~Dv~LI~~N~~~yNg~~s~~~~~A~~l~~d~~~el~Ei~~ 108 (109)
T cd05492 62 TSLEEFKADALLLLHNTAIFHGADSEQYDAARWLYRDTCHDLRELRL 108 (109)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 37899999999999999999999999999999999999999988864
No 5
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.59 E-value=6.1e-08 Score=83.65 Aligned_cols=45 Identities=24% Similarity=0.322 Sum_probs=42.1
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHh
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENL 46 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~L 46 (517)
-+++||.+||.||++||+.||.+++.+|+.|+.|++.+.+.+++|
T Consensus 59 ~s~~ef~~D~~li~~Na~~yN~~~s~v~~~A~~l~~~~~~~~~~~ 103 (104)
T cd05507 59 RSTAEFQRDVLLMFQNAIMYNSSDHDVYLMAVEMQREVMSQIQQL 103 (104)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 378999999999999999999999999999999999998888765
No 6
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.57 E-value=7.6e-08 Score=84.72 Aligned_cols=45 Identities=20% Similarity=0.175 Sum_probs=41.5
Q ss_pred ChhhhhhhHHHHHhhhhccCCCC-chHHHHHHHHHHHHHHHHHHhh
Q 010122 3 GCILTQKDVFLICSNAMQYNAPD-TIYFRQARSIHELAKKNFENLR 47 (517)
Q Consensus 3 sleeFe~Df~Li~sNaM~YN~pD-TIYykaA~~l~e~~~k~f~~Lr 47 (517)
++++|.+||.||++||+.||.++ ++||+.|+.|++.+.+.+..|.
T Consensus 65 s~~ef~~D~~Li~~N~~~yN~~~s~~~~~~A~~l~~~~~~~~~~~~ 110 (112)
T cd05510 65 SKAEFVDDLNLIWKNCLLYNSDPSHPLRRHANFMKKKAEHLLKLIP 110 (112)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 78999999999999999999975 5899999999999999998773
No 7
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.54 E-value=5.2e-08 Score=85.30 Aligned_cols=50 Identities=26% Similarity=0.402 Sum_probs=46.3
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhcCCC
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQDSD 51 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~Lr~~~e 51 (517)
.++++|++||+||+.||+.||.+++.+|+.|+.|++.+.+.++.+..+..
T Consensus 56 ~s~~ef~~Dv~li~~Na~~yN~~~s~i~~~A~~l~~~~~~~~~~~~~~~~ 105 (112)
T cd05511 56 QSREEFLEDIELIVDNSVLYNGPDSVYTKKAKEMLELAEELLAEREEKLT 105 (112)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 37899999999999999999999999999999999999999998876554
No 8
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.51 E-value=1.4e-07 Score=80.08 Aligned_cols=44 Identities=30% Similarity=0.400 Sum_probs=41.7
Q ss_pred ChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHh
Q 010122 3 GCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENL 46 (517)
Q Consensus 3 sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~L 46 (517)
++++|++||.||+.||+.||.+++.+|+.|++|+....+.+++|
T Consensus 58 s~~~f~~Dv~li~~Na~~yN~~~s~~~~~a~~l~~~f~~~~~~~ 101 (101)
T cd05509 58 TLEEFVADLKLIFDNCRLYNGPDTEYYKCANKLEKFFWKKLKEL 101 (101)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 78999999999999999999999999999999999998888765
No 9
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=98.49 E-value=2e-07 Score=81.91 Aligned_cols=47 Identities=21% Similarity=0.143 Sum_probs=41.7
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhc
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQ 48 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~Lr~ 48 (517)
-++++|++||.||++||+.||.+++.+|+.|.+|++.-.+.++++-.
T Consensus 64 ~s~~~f~~D~~lm~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 110 (113)
T cd05524 64 DDVDDLTADFELLINNAKAYYKPDSPEHKDACKLWELFLSARNEVLS 110 (113)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 37899999999999999999999999999999999887776666543
No 10
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.48 E-value=1.3e-07 Score=81.58 Aligned_cols=41 Identities=22% Similarity=0.194 Sum_probs=38.0
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHH
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKN 42 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~ 42 (517)
.++++|.+||.||++||+.||.+++.+|+.|+.|++.+...
T Consensus 58 ~s~~ef~~Dv~LI~~Na~~YN~~~s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 58 GSTDAFLADAKWILHNAIIYNGGDHKLTQAAKAIVKICEQE 98 (99)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhh
Confidence 37899999999999999999999999999999999987653
No 11
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.46 E-value=2.4e-07 Score=81.67 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=42.3
Q ss_pred ChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHhh
Q 010122 3 GCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLR 47 (517)
Q Consensus 3 sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~Lr 47 (517)
|+++|++||.||++||+.||.+|+.+|+.|..|+.+-.+.+++|.
T Consensus 69 s~~~f~~Dv~LI~~Na~~yN~~~s~i~~~A~~l~~~f~~~~~~~~ 113 (115)
T cd05504 69 LAEEFLSDIQLVFSNCFLYNPEHTSVYKAGTRLQRFFIKRCRKLG 113 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 789999999999999999999999999999999999888888764
No 12
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.40 E-value=3.5e-07 Score=79.67 Aligned_cols=44 Identities=16% Similarity=0.230 Sum_probs=40.6
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHH
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFEN 45 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~ 45 (517)
-++++|.+|+.||++||+.||.+++.+|+.|..|++...+.|.+
T Consensus 63 ~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~l~~~f~~~l~~ 106 (107)
T cd05497 63 WSASECIQDFNTMFTNCYIYNKPGDDVVLMAQTLEKLFLQKLAQ 106 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHc
Confidence 37899999999999999999999999999999999988877765
No 13
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.40 E-value=4.4e-07 Score=79.07 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=41.4
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHh
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENL 46 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~L 46 (517)
-++++|.+||.||++||+.||.+++.+|+.|++|++.-.+.++.+
T Consensus 62 ~s~~ef~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~F~~~~~~~ 106 (108)
T cd05495 62 QDPWQYVDDVWLMFDNAWLYNRKTSRVYKYCTKLAEVFEQEIDPV 106 (108)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999999999888877765
No 14
>smart00297 BROMO bromo domain.
Probab=98.40 E-value=4.2e-07 Score=76.07 Aligned_cols=43 Identities=28% Similarity=0.448 Sum_probs=39.9
Q ss_pred ChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHH
Q 010122 3 GCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFEN 45 (517)
Q Consensus 3 sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~ 45 (517)
++++|++||.||+.||+.||.+++.+|+.|++|++...+.++.
T Consensus 64 s~~ef~~D~~li~~Na~~~n~~~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 64 SVEEFVADVQLMFSNAKTYNGPDSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 7899999999999999999999999999999999987777654
No 15
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.37 E-value=4e-07 Score=81.56 Aligned_cols=43 Identities=23% Similarity=0.323 Sum_probs=39.9
Q ss_pred ChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHH
Q 010122 3 GCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFEN 45 (517)
Q Consensus 3 sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~ 45 (517)
++++|+.||+||+.||+.||.+++.+|+.|++|+....+++..
T Consensus 85 s~~~f~~Dv~Li~~Na~~yN~~~s~i~~~A~~l~~~~~~~l~~ 127 (128)
T cd05529 85 SLEALRHDVRLILSNAETFNEPNSEIAKKAKRLSDWLLRILSS 127 (128)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 7899999999999999999999999999999999988777653
No 16
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=98.36 E-value=4.6e-07 Score=78.45 Aligned_cols=39 Identities=23% Similarity=0.387 Sum_probs=36.2
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHH
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAK 40 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~ 40 (517)
-++++|++||.||++||+.||.+++.+|+.|++|+.+-+
T Consensus 62 ~s~~~f~~D~~lm~~Na~~yN~~~s~i~~~A~~L~~~f~ 100 (103)
T cd05520 62 ETLEELEADLNLMFENAKRYNVPNSRIYKDAEKLQKLMQ 100 (103)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999999998754
No 17
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.35 E-value=5.9e-07 Score=78.08 Aligned_cols=42 Identities=21% Similarity=0.393 Sum_probs=37.9
Q ss_pred ChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHH
Q 010122 3 GCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFE 44 (517)
Q Consensus 3 sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~ 44 (517)
++++|+.||.||++||+.||.+++.+|+.|..|++.-...++
T Consensus 64 s~~ef~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~f~~~~~ 105 (107)
T cd05516 64 SLEDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFKSARQ 105 (107)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHh
Confidence 789999999999999999999999999999999987555544
No 18
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.33 E-value=7.5e-07 Score=78.03 Aligned_cols=42 Identities=19% Similarity=0.170 Sum_probs=38.7
Q ss_pred ChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHH
Q 010122 3 GCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFEN 45 (517)
Q Consensus 3 sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~ 45 (517)
++++|.+||+||++||+.||.+| .+|+.|..|...-.+.|.+
T Consensus 57 s~~ef~~D~~Lif~N~~~yN~~~-~~~~~a~~L~~~Fek~~~~ 98 (102)
T cd05501 57 TVEGFVRDMRLIFHNHKLFYKDD-DFGQVGITLEKKFEKNFKE 98 (102)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999 9999999999887777665
No 19
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.32 E-value=8.8e-07 Score=76.72 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=41.2
Q ss_pred ChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHh
Q 010122 3 GCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENL 46 (517)
Q Consensus 3 sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~L 46 (517)
++++|.+|+.||+.||+.||.+++.+|+.|+.|+....+.+.++
T Consensus 63 s~~~f~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~f~~~~~~~ 106 (109)
T cd05502 63 SPEEFVADVRLMFKNCYKFNEEDSEVAQAGKELELFFEEQLKEI 106 (109)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999888887764
No 20
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.30 E-value=7e-07 Score=76.65 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=38.0
Q ss_pred ChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHH
Q 010122 3 GCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNF 43 (517)
Q Consensus 3 sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f 43 (517)
|+++|++|+.||++||+.||.+++.+|+.|++|+...++.|
T Consensus 63 s~~~f~~D~~li~~Na~~yn~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 63 SLEEFLEDFHLMFANARTYNQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 78999999999999999999999999999999998876653
No 21
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.27 E-value=9.7e-07 Score=70.65 Aligned_cols=41 Identities=32% Similarity=0.389 Sum_probs=37.4
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHH
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKN 42 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~ 42 (517)
-++++|++|+.||+.||+.||.+++.+|+.|.+|+....+.
T Consensus 58 ~s~~~f~~D~~li~~Na~~~n~~~~~~~~~a~~l~~~~~~~ 98 (99)
T cd04369 58 KSLEEFEADVRLIFSNAKTYNGPGSPIYKDAKKLEKLFEKL 98 (99)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 37899999999999999999999999999999999876553
No 22
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.27 E-value=9.8e-07 Score=77.03 Aligned_cols=37 Identities=14% Similarity=0.071 Sum_probs=35.0
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHH
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHEL 38 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~ 38 (517)
-++++|++||.||+.||+.||.+|+..|+.|.+|+++
T Consensus 64 ~s~~ef~~D~~l~f~Na~~yn~~~S~i~~~A~~L~~~ 100 (106)
T cd05525 64 KTPEAFDSDMLKVFRNAEKYYGRKSPIGRDVCRLRKA 100 (106)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999875
No 23
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.27 E-value=8.9e-07 Score=76.09 Aligned_cols=39 Identities=18% Similarity=0.156 Sum_probs=36.6
Q ss_pred ChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHH
Q 010122 3 GCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKK 41 (517)
Q Consensus 3 sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k 41 (517)
|+++|.+|+.||+.||+.||.+++..|+.|.+|++....
T Consensus 57 s~~ef~~D~~li~~Na~~yN~~~s~i~~~a~~le~~f~~ 95 (97)
T cd05505 57 SVQEFLDDMKLVFSNAEKYYENGSYVLSCMRKTEQCCVN 95 (97)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999987654
No 24
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=98.27 E-value=9.7e-07 Score=76.59 Aligned_cols=38 Identities=18% Similarity=0.186 Sum_probs=35.3
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHH
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELA 39 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~ 39 (517)
-++++|++||.||+.||+.||.+++.+|+.|+.|+.+-
T Consensus 62 ~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~le~~~ 99 (103)
T cd05518 62 ATEEELMDDFKLMFRNARHYNEEGSQVYEDANILEKVL 99 (103)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999998764
No 25
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=98.26 E-value=7.7e-07 Score=71.54 Aligned_cols=33 Identities=33% Similarity=0.413 Sum_probs=31.3
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHH
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARS 34 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~ 34 (517)
.++++|++||++|+.||+.||.++++.|+.|++
T Consensus 52 ~s~~~f~~Dv~~i~~Na~~yn~~~s~~~~~A~~ 84 (84)
T PF00439_consen 52 KSIEEFEADVRLIFQNARRYNPPDSPIYKAAEK 84 (84)
T ss_dssp SSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHCCCcCHHHHHhcC
Confidence 478999999999999999999999999999985
No 26
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=98.25 E-value=1.4e-06 Score=76.81 Aligned_cols=45 Identities=22% Similarity=0.243 Sum_probs=40.6
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCc----hHHHHHHHHHHHHHHHHHHh
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDT----IYFRQARSIHELAKKNFENL 46 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDT----IYykaA~~l~e~~~k~f~~L 46 (517)
-|+++|++|++||++||+.||.++| .+|..|.+|++...+.+++.
T Consensus 59 ~s~~ef~~Dv~li~~Na~~yN~~~s~~~s~i~~~A~~L~~~~~~~~~~~ 107 (112)
T cd05528 59 LTAKDFLKDIDLIVTNALEYNPDRDPADKLIRSRACELRDEVHAMIEAE 107 (112)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCccccHHHHHHHHHHHHHHHHHHhc
Confidence 3789999999999999999999974 88999999999999888763
No 27
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=98.25 E-value=1.3e-06 Score=75.61 Aligned_cols=41 Identities=22% Similarity=0.351 Sum_probs=37.3
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHH
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKN 42 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~ 42 (517)
-++++|++||.||++||+.||.+++..|+.|..|+.+..+.
T Consensus 62 ~s~~ef~~D~~l~~~Na~~yN~~~s~i~~~A~~L~~~~~~~ 102 (105)
T cd05515 62 QSLDDMVSDFVLMFDNACKYNEPDSQIYKDALTLQKVLLET 102 (105)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999875543
No 28
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.21 E-value=1.6e-06 Score=73.78 Aligned_cols=40 Identities=20% Similarity=0.183 Sum_probs=36.4
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHH
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKK 41 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k 41 (517)
.|+++|.+|+.||+.||+.||.+++.+|+.|+.|++.-.+
T Consensus 56 ~s~~ef~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~f~~ 95 (97)
T cd05503 56 KTLEEFAEDVRLVFDNCETFNEDDSEVGRAGHNMRKFFEK 95 (97)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999886443
No 29
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.21 E-value=1.7e-06 Score=75.60 Aligned_cols=41 Identities=17% Similarity=0.140 Sum_probs=37.2
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHH
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKN 42 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~ 42 (517)
-++++|++||.||++||+.||.+++..|+.|..|+....+.
T Consensus 61 ~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~le~~~~~~ 101 (106)
T cd05521 61 TNAQEFVNDLAQIPWNARLYNTKGSVIYKYALILEKYINDV 101 (106)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 37899999999999999999999999999999999875544
No 30
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=98.19 E-value=1.6e-06 Score=75.14 Aligned_cols=36 Identities=25% Similarity=0.432 Sum_probs=34.3
Q ss_pred ChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHH
Q 010122 3 GCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHEL 38 (517)
Q Consensus 3 sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~ 38 (517)
++++|+.||.||++||+.||.+++.+|+.|..|+.+
T Consensus 63 s~~~f~~D~~lm~~Na~~yN~~~s~i~~~A~~l~~~ 98 (103)
T cd05517 63 SIEDMEKDLDLMVKNAKTFNEPGSQVYKDANAIKKI 98 (103)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 789999999999999999999999999999999765
No 31
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.17 E-value=2e-06 Score=73.51 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=36.6
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHH
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKK 41 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k 41 (517)
-++++|+.|+.||+.||+.||.+++..|+.|++|+..-.+
T Consensus 61 ~s~~ef~~D~~li~~N~~~yn~~~s~~~~~a~~l~~~fe~ 100 (102)
T cd05499 61 QSAKEFERDVRLIFKNCYTFNPEGTDVYMMGHQLEEVFND 100 (102)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999987544
No 32
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.17 E-value=2e-06 Score=73.16 Aligned_cols=39 Identities=28% Similarity=0.387 Sum_probs=36.2
Q ss_pred ChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHH
Q 010122 3 GCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKK 41 (517)
Q Consensus 3 sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k 41 (517)
++++|+.|+.||+.||+.||.+++..|+.|++|++.-.+
T Consensus 62 s~~ef~~D~~li~~Na~~yn~~~s~i~~~a~~l~~~fe~ 100 (102)
T cd05498 62 DAQEFAADVRLMFSNCYKYNPPDHPVHAMARKLQDVFED 100 (102)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999876544
No 33
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.16 E-value=2.1e-06 Score=73.74 Aligned_cols=39 Identities=15% Similarity=0.253 Sum_probs=35.8
Q ss_pred ChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHH
Q 010122 3 GCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKK 41 (517)
Q Consensus 3 sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k 41 (517)
++++|.+||.||++||+.||.+++.+|+.|++|+..-.+
T Consensus 63 s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~l~~~fe~ 101 (103)
T cd05500 63 SVEEFTADFNLMVDNCLTFNGPEHPVSQMGKRLQAAFEK 101 (103)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999876443
No 34
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.14 E-value=2.8e-06 Score=71.77 Aligned_cols=38 Identities=26% Similarity=0.252 Sum_probs=35.1
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHH
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELA 39 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~ 39 (517)
.++++|++|+.||+.||+.||.+++..|+.|.+|+..-
T Consensus 58 ~s~~ef~~D~~li~~Na~~yn~~~s~i~~~a~~l~~~f 95 (99)
T cd05506 58 SSPEEFAADVRLTFANAMRYNPPGNDVHTMAKELLKIF 95 (99)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999998653
No 35
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=98.07 E-value=5.8e-06 Score=73.54 Aligned_cols=46 Identities=17% Similarity=0.154 Sum_probs=39.9
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHhh
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLR 47 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~Lr 47 (517)
.++++|++||+|||+||+.||.+|+..|+-|..|+.+-.+.-+.|.
T Consensus 63 ~~ld~~~~D~~lmf~NAr~yN~~~S~iy~dA~eLq~~f~~~rd~~~ 108 (110)
T cd05526 63 RRLDKFQEDMFEVLERARRLSRTDSEIYEDAVELQQFFIKIRDELC 108 (110)
T ss_pred CcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 4799999999999999999999999999999999987655544443
No 36
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.05 E-value=5.4e-06 Score=71.79 Aligned_cols=39 Identities=23% Similarity=0.238 Sum_probs=36.0
Q ss_pred ChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHH
Q 010122 3 GCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKK 41 (517)
Q Consensus 3 sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k 41 (517)
++++|++|+.||+.||+.||.+++..|+.|..|+....+
T Consensus 64 s~~~f~~D~~li~~Na~~yn~~~s~i~~~A~~l~~~f~~ 102 (104)
T cd05522 64 SFDQFLNDLNLMFENAKLYNENDSQEYKDAVLLEKEARL 102 (104)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999876544
No 37
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.02 E-value=8.1e-06 Score=72.89 Aligned_cols=46 Identities=20% Similarity=0.254 Sum_probs=40.3
Q ss_pred ChhhhhhhHHHHHhhhhccCCC-CchHHHHHHHHHHHHHHHHHHhhc
Q 010122 3 GCILTQKDVFLICSNAMQYNAP-DTIYFRQARSIHELAKKNFENLRQ 48 (517)
Q Consensus 3 sleeFe~Df~Li~sNaM~YN~p-DTIYykaA~~l~e~~~k~f~~Lr~ 48 (517)
++++|.+||+||+.||+.||.+ ++.-|..|..|...-.+.+.+|-.
T Consensus 62 ~~~ef~~D~~lif~Na~~yN~~~~s~i~~~a~~L~~~F~~~~~~l~~ 108 (119)
T cd05496 62 DPMEFAKDVRLIFSNSKSYTPNKRSRIYSMTLRLSALFEEHIKKIIS 108 (119)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999984 888889999999887777776644
No 38
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=97.84 E-value=2.2e-05 Score=86.47 Aligned_cols=57 Identities=19% Similarity=0.304 Sum_probs=48.8
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCCcccc
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQDSDDNEPETK 58 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~Lr~~~e~~E~e~k 58 (517)
.+.+||.+||+|||+|||.||.++..-|.-|++|++.=...+..+...++..+....
T Consensus 280 ~~~~eF~~DVRL~F~Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~~~~~~ 336 (640)
T KOG1474|consen 280 KSAEEFAADVRLTFDNCMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIEESESAVK 336 (640)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhccccccccccccc
Confidence 367899999999999999999999999999999999988888887776665554443
No 39
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=97.42 E-value=6.3e-05 Score=79.20 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=33.8
Q ss_pred hhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHH
Q 010122 5 ILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKK 41 (517)
Q Consensus 5 eeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k 41 (517)
-+|..||+|||.|||+||.++|+||+.|++++|.+..
T Consensus 266 ~~f~~D~kl~~l~amT~gehsk~yyelank~lhf~~~ 302 (418)
T KOG1828|consen 266 LSFTQDRKLIALKAVTNGEHSKSYYELANKQLHFGVP 302 (418)
T ss_pred hhhhcccchhhHHHHhcCCcchHHHHHHHhhhhhcCc
Confidence 4899999999999999999999999999999995443
No 40
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=97.37 E-value=0.00019 Score=73.75 Aligned_cols=44 Identities=23% Similarity=0.321 Sum_probs=41.1
Q ss_pred ChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHh
Q 010122 3 GCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENL 46 (517)
Q Consensus 3 sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~L 46 (517)
++++|..||.||++||..||.+|..=|+-|+.|+....+.++.+
T Consensus 205 s~eef~~D~~lM~~N~~~yN~~~s~v~~~a~~l~~~~~~~i~~~ 248 (371)
T COG5076 205 SFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKYFLKLIEEI 248 (371)
T ss_pred hHHHHHHHHHHHHHhhhhccCCCcchhhhhHHHHHHHHHHHHhc
Confidence 78999999999999999999999999999999999988887754
No 41
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=96.70 E-value=0.00074 Score=61.40 Aligned_cols=26 Identities=15% Similarity=0.031 Sum_probs=24.3
Q ss_pred ChhhhhhhHHHHHhhhhccCCCCchH
Q 010122 3 GCILTQKDVFLICSNAMQYNAPDTIY 28 (517)
Q Consensus 3 sleeFe~Df~Li~sNaM~YN~pDTIY 28 (517)
+.++|.+|++||++||..||.+|+++
T Consensus 81 tp~~F~~DiklI~~Nc~~ynd~dr~~ 106 (119)
T cd05491 81 TPKDFLKDIKRIVRDAKTIGDRERLL 106 (119)
T ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 68999999999999999999999965
No 42
>PF12024 DUF3512: Domain of unknown function (DUF3512); InterPro: IPR021900 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 231 to 249 amino acids in length. This domain is found associated with PF00439 from PFAM.
Probab=96.09 E-value=0.0044 Score=62.24 Aligned_cols=85 Identities=21% Similarity=0.383 Sum_probs=68.6
Q ss_pred ccccCCcccCCCccc-ccccccccc--------cccccccc-cCCceeeeccCccceeEEeccCCchh--hHHHHHHHHH
Q 010122 149 SLSKGYSMKHGKKQV-VLDENRRNT--------YKQFHQSL-RESSVLTTFDADKKQLMTVGLHSEHG--YTRSLARFAA 216 (517)
Q Consensus 149 s~~kG~s~K~GkKp~-~vDE~RR~T--------Yk~~~ss~-~e~svft~~~~e~KqLV~VGlq~E~s--YARSLARFAA 216 (517)
+.+.|. +..|-..+ .+.|+||+- |-++.++. ..++.|+++..|--.||.-.|..+.+ ||.||.+|++
T Consensus 89 g~l~gk-L~~G~~tL~gfkEdrrnkvtpv~yl~YGpfsS~AP~yDStfa~lskeesdLiystYGd~t~~~~a~Si~eFv~ 167 (245)
T PF12024_consen 89 GSLSGK-LQSGTNTLQGFKEDRRNKVTPVSYLNYGPFSSFAPTYDSTFANLSKEESDLIYSTYGDETGVQYAFSIQEFVK 167 (245)
T ss_pred HHhhcc-ccCCcccccccchhhccceeeecccccCccccccccccccccccCcchhhHHHhhcCCccCCchhHHHHHHhh
Confidence 445554 55666666 788999993 33444443 77899999999999999999999988 9999999999
Q ss_pred hhChHHHHHHHHHHhhcC
Q 010122 217 NLGPVAWKIAARRIERCL 234 (517)
Q Consensus 217 dLGPvaW~IAskRIe~~L 234 (517)
+-|-++.+||...|..+-
T Consensus 168 ~~~~y~~~~vd~LLD~lT 185 (245)
T PF12024_consen 168 DCGSYAYKMVDDLLDVLT 185 (245)
T ss_pred cCchHHHHHHhhhhhhhc
Confidence 999999999998887653
No 43
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=95.98 E-value=0.0013 Score=69.63 Aligned_cols=42 Identities=19% Similarity=0.026 Sum_probs=38.6
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHH
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNF 43 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f 43 (517)
++|-+|+.|++|||+||..||..+|+||.+|++|+-++..++
T Consensus 75 l~L~~m~~d~kl~~~na~~yn~~~Tv~~~aaKrL~~v~~~~~ 116 (418)
T KOG1828|consen 75 LVLSQMEFDRKLPDGNATLYNLHPTVPIVAAKRLCPVRLGMT 116 (418)
T ss_pred eechhhhhhhcccccchhhhhcCCccccccccccchhhcchh
Confidence 468899999999999999999999999999999998776666
No 44
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=92.08 E-value=0.13 Score=57.74 Aligned_cols=38 Identities=24% Similarity=0.411 Sum_probs=34.8
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHH
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELA 39 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~ 39 (517)
.+++.|+.||+||++||..||.+|.-+|+.|.-|....
T Consensus 114 ~~~~~f~~D~~lm~ena~~~n~~ds~~~~~s~~l~~~~ 151 (629)
T KOG1827|consen 114 KRLSFFQLDFLLMTENARLYNRPDSLIYKDSGELEKYF 151 (629)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhhhcch
Confidence 36799999999999999999999999999999988753
No 45
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=91.62 E-value=0.13 Score=61.64 Aligned_cols=41 Identities=32% Similarity=0.445 Sum_probs=38.1
Q ss_pred ChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHH
Q 010122 3 GCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNF 43 (517)
Q Consensus 3 sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f 43 (517)
++++|.+|+++||.||..||..++.|-+.|++|.+.|...+
T Consensus 1439 s~~e~l~dv~~i~~n~~~~ng~e~~y~~k~~k~~ev~~~~~ 1479 (1563)
T KOG0008|consen 1439 SRSEFLDDVNLIYVNSVEYNGAESAYTKKARKIGEVGLANL 1479 (1563)
T ss_pred cHHHHhhhhHhhcccceeecCccccccHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999999887654
No 46
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=89.81 E-value=0.16 Score=57.91 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=36.2
Q ss_pred ChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHH
Q 010122 3 GCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNF 43 (517)
Q Consensus 3 sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f 43 (517)
..+.|..|+..|++||..||..||-|||-|-.|.+..-..+
T Consensus 663 ~~~~f~ad~~~vf~ncr~yn~~~~~y~k~~~~le~~~~~k~ 703 (720)
T KOG1472|consen 663 EVELFMADVVRVFANCRMYNGSDTQYYKCAQALEKFFLFKL 703 (720)
T ss_pred hHHHHHHHHHHHHhhhhccCCccchheecccchhhhhcchh
Confidence 46899999999999999999999999999999988754443
No 47
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=66.31 E-value=5.7 Score=47.49 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=38.2
Q ss_pred ChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHhh
Q 010122 3 GCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLR 47 (517)
Q Consensus 3 sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~Lr 47 (517)
++++.+.||.+||.||..||..+..-|.-|..|+..-+.....+-
T Consensus 1087 ~~~~~~~~~~~~~~na~~~~~egs~~y~d~~~l~~~~~~~~~~~~ 1131 (1157)
T KOG0386|consen 1087 SLKELEKDFMLLFNNARTYNEEGSRVYEDAIVLQSVFKSARQEIS 1131 (1157)
T ss_pred hHHHHHHHHHhhcchhhhhccCCceechhHHHHHHHHhhhHHHHh
Confidence 578999999999999999999999999999999876555544443
No 48
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=56.74 E-value=11 Score=46.46 Aligned_cols=40 Identities=28% Similarity=0.306 Sum_probs=36.4
Q ss_pred hhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHH
Q 010122 4 CILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNF 43 (517)
Q Consensus 4 leeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f 43 (517)
-|.|.+|..||++|-.+||.+-.+|-++|..++.+|...+
T Consensus 1319 r~~fle~~~~~~~ns~~yng~~~~~t~~~q~mls~~~~~~ 1358 (1563)
T KOG0008|consen 1319 REHFLEELPLIVSNSTKYNGPLASLTRQQQSMLSLCFEKL 1358 (1563)
T ss_pred HHHHHHHhHHHhhchhhhcCchHHHHHHHHHHHHHHHHhh
Confidence 4789999999999999999999999999999999876543
No 49
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=23.20 E-value=55 Score=38.23 Aligned_cols=33 Identities=21% Similarity=0.199 Sum_probs=28.1
Q ss_pred ChhhhhhhHHHHHhhhhccCCCCchHHHHHHHH
Q 010122 3 GCILTQKDVFLICSNAMQYNAPDTIYFRQARSI 35 (517)
Q Consensus 3 sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l 35 (517)
++++|..|+.+|..||..||...--|-+.-.-+
T Consensus 343 ~~~~fv~d~~~~~~n~~~~n~ee~~~~~~~~vv 375 (720)
T KOG1472|consen 343 SKEEFVNDLMLIWRNCEKYNSEESHGLIEFAVI 375 (720)
T ss_pred chhHHHHHHHHHHhcchhhccccchhhhhhhhh
Confidence 689999999999999999999998776654443
No 50
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=22.96 E-value=33 Score=39.32 Aligned_cols=30 Identities=27% Similarity=0.389 Sum_probs=27.6
Q ss_pred hhhHHHHHhhhhccCCCCchHHHHHHHHHH
Q 010122 8 QKDVFLICSNAMQYNAPDTIYFRQARSIHE 37 (517)
Q Consensus 8 e~Df~Li~sNaM~YN~pDTIYykaA~~l~e 37 (517)
..||.||++||-.||.+++.-||.|+-+++
T Consensus 3 ~~df~l~~e~~~~~~~p~s~p~k~~~~~~~ 32 (629)
T KOG1827|consen 3 VADFPLMTENACSDNEPDSLPGKDAKNLQK 32 (629)
T ss_pred hhhhhHHhhccccccCCccccccCcchhhh
Confidence 479999999999999999999999988875
Done!