Query 010122
Match_columns 517
No_of_seqs 126 out of 141
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 20:23:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010122.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010122hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d9e_A Peregrin; four-helix bu 99.0 2.7E-10 9.4E-15 98.9 4.5 52 2-53 63-114 (121)
2 3rcw_A Bromodomain-containing 98.9 6.1E-10 2.1E-14 97.7 4.4 52 2-53 69-120 (135)
3 2grc_A Probable global transcr 98.8 2.9E-09 9.9E-14 93.2 5.3 54 2-55 74-127 (129)
4 4alg_A Bromodomain-containing 98.8 3.8E-09 1.3E-13 95.4 5.6 50 2-51 90-139 (154)
5 3hme_A Bromodomain-containing 98.8 3.5E-09 1.2E-13 92.0 4.4 47 2-48 69-115 (123)
6 2i7k_A Bromodomain-containing 98.8 6.8E-09 2.3E-13 90.0 5.6 47 2-48 64-110 (117)
7 2yyn_A Transcription intermedi 98.7 9.8E-09 3.3E-13 90.6 6.4 56 2-57 77-132 (135)
8 3mb4_A Protein polybromo-1; PB 98.7 1.1E-08 3.7E-13 88.8 5.9 47 2-48 77-123 (124)
9 3jvl_A Bromodomain-containing 98.7 8.5E-09 2.9E-13 88.7 4.8 49 2-50 70-118 (120)
10 3uv4_A Second bromodomain of h 98.7 2.6E-09 8.9E-14 97.1 1.6 57 2-58 86-142 (158)
11 3d7c_A General control of amin 98.7 1.3E-08 4.5E-13 86.7 5.7 47 2-48 63-109 (112)
12 3iu5_A Protein polybromo-1; PB 98.7 1.6E-08 5.3E-13 86.7 5.9 47 2-48 67-113 (116)
13 2dat_A Possible global transcr 98.7 1.4E-08 4.8E-13 88.1 5.2 45 2-46 75-119 (123)
14 3k2j_A Protein polybromo-1; PB 98.7 1.9E-08 6.6E-13 88.5 5.6 49 2-50 79-127 (130)
15 3g0l_A Hwalp4, bromodomain adj 98.7 2.2E-08 7.5E-13 85.7 5.7 47 2-48 69-115 (117)
16 3ljw_A Protein polybromo-1; al 98.7 2.2E-08 7.7E-13 86.3 5.7 46 2-47 70-115 (120)
17 2ouo_A HUNK1 protein, bromodom 98.7 2E-08 6.7E-13 88.2 5.4 47 2-48 83-129 (130)
18 3p1f_A CREB-binding protein; s 98.6 2.4E-08 8.3E-13 85.7 5.5 47 2-48 70-116 (119)
19 1e6i_A Transcriptional activat 98.6 2.3E-08 8E-13 86.6 5.3 46 2-47 69-114 (121)
20 3tlp_A Protein polybromo-1; PB 98.6 2.8E-08 9.7E-13 88.5 5.9 52 2-53 87-138 (150)
21 2oss_A HUNK1 protein, bromodom 98.6 2.2E-08 7.5E-13 87.6 4.9 47 2-48 79-125 (127)
22 3mqm_A Probable histone-lysine 98.6 2.9E-08 1E-12 86.1 5.2 49 2-50 71-119 (126)
23 3nxb_A CAT eye syndrome critic 98.6 2.7E-08 9.2E-13 85.1 4.7 44 2-45 72-115 (116)
24 3fkm_X Signaling protein; brom 98.6 6.4E-08 2.2E-12 88.3 5.9 46 2-47 79-124 (166)
25 3mb3_A PH-interacting protein; 98.5 7.7E-08 2.6E-12 84.4 5.7 47 2-48 77-124 (135)
26 3q2e_A Bromodomain and WD repe 98.5 1.4E-07 4.7E-12 81.7 5.7 50 2-51 66-116 (123)
27 3aad_A Transcription initiatio 98.4 3.3E-08 1.1E-12 97.0 0.8 59 2-60 226-284 (292)
28 3uv5_A Transcription initiatio 98.4 6.1E-08 2.1E-12 93.5 1.5 55 2-56 193-247 (265)
29 2r0y_A Chromatin structure-rem 98.4 2.6E-07 8.8E-12 91.9 5.6 44 2-45 219-262 (311)
30 2r0y_A Chromatin structure-rem 98.3 4.2E-07 1.4E-11 90.3 5.2 45 3-47 86-130 (311)
31 2dkw_A Hypothetical protein KI 98.3 3.7E-07 1.3E-11 80.7 3.8 49 2-50 63-116 (131)
32 2r10_A Chromatin structure-rem 98.3 4.4E-07 1.5E-11 91.5 4.4 44 2-45 269-312 (361)
33 2r10_A Chromatin structure-rem 98.3 5.8E-07 2E-11 90.7 5.1 45 3-47 136-180 (361)
34 3uv5_A Transcription initiatio 98.2 1E-06 3.6E-11 85.0 5.2 48 2-49 70-117 (265)
35 3dai_A ATPase family AAA domai 98.2 1.4E-06 4.9E-11 76.1 5.5 43 2-44 66-112 (130)
36 3aad_A Transcription initiatio 97.9 2.3E-06 7.8E-11 84.0 1.4 45 2-46 103-147 (292)
37 3iu6_A Protein polybromo-1; PB 97.9 1.1E-05 3.6E-10 73.8 5.7 50 2-51 65-114 (147)
38 3u5n_A E3 ubiquitin-protein li 97.4 1.9E-05 6.4E-10 73.6 -0.8 36 2-37 139-174 (207)
39 3lqh_A Histone-lysine N-methyl 95.6 0.013 4.6E-07 54.7 5.4 45 2-46 120-164 (183)
40 1dum_A Magainin 2; antibiotic, 47.7 0.9 3.1E-05 30.6 -3.0 19 232-250 4-22 (26)
41 3fke_A Polymerase cofactor VP3 22.0 24 0.00082 31.7 0.6 17 232-248 101-117 (129)
No 1
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=2.7e-10 Score=98.89 Aligned_cols=52 Identities=29% Similarity=0.436 Sum_probs=48.4
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQDSDDN 53 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~Lr~~~e~~ 53 (517)
.++++|++||.|||+||+.||.+++.+|+.|++|++.+.++|+.+|...+..
T Consensus 63 ~s~~ef~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~~~~~l~~~~~~~~~~ 114 (121)
T 2d9e_A 63 LNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEKM 114 (121)
T ss_dssp CSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3789999999999999999999999999999999999999999999876644
No 2
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=98.91 E-value=6.1e-10 Score=97.68 Aligned_cols=52 Identities=27% Similarity=0.383 Sum_probs=48.4
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQDSDDN 53 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~Lr~~~e~~ 53 (517)
.++++|++||.|||+||+.||.+|+.+|+.|++|++.+.++|+.++.+.+..
T Consensus 69 ~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~~~~~~~~~~~~~~~~ 120 (135)
T 3rcw_A 69 KNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDSI 120 (135)
T ss_dssp SSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4789999999999999999999999999999999999999999999877643
No 3
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=98.82 E-value=2.9e-09 Score=93.23 Aligned_cols=54 Identities=17% Similarity=0.338 Sum_probs=47.2
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCCc
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQDSDDNEP 55 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~Lr~~~e~~E~ 55 (517)
.++++|.+||.|||+||+.||.+++.+|+.|++|+....+.+++|....+.++.
T Consensus 74 ~s~~~f~~Dv~Li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~~~~~~~ 127 (129)
T 2grc_A 74 RSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEGE 127 (129)
T ss_dssp CSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCCCccccc
Confidence 378999999999999999999999999999999999999999999887765543
No 4
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=98.80 E-value=3.8e-09 Score=95.39 Aligned_cols=50 Identities=14% Similarity=0.248 Sum_probs=45.1
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhcCCC
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQDSD 51 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~Lr~~~e 51 (517)
.++++|++||.|||+||+.||.+++.+|+.|++|++...+.|.++..+..
T Consensus 90 ~s~~ef~~Dv~Lif~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~l~~~~~ 139 (154)
T 4alg_A 90 WAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQEEQ 139 (154)
T ss_dssp SSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTTSCSSCC
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCchhc
Confidence 47899999999999999999999999999999999998888888765443
No 5
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=98.78 E-value=3.5e-09 Score=92.00 Aligned_cols=47 Identities=34% Similarity=0.523 Sum_probs=43.5
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhc
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQ 48 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~Lr~ 48 (517)
.++++|++||.|||.||+.||.+++.+|+.|++|++.+.+.+++.|.
T Consensus 69 ~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~~~~~~~~~~~ 115 (123)
T 3hme_A 69 KSVTEFKADFKLMCDNAMTYNRPDTVYYKLAKKILHAGFKMMSKERL 115 (123)
T ss_dssp CSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999998877654
No 6
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=98.76 E-value=6.8e-09 Score=89.96 Aligned_cols=47 Identities=30% Similarity=0.494 Sum_probs=43.6
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhc
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQ 48 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~Lr~ 48 (517)
.++++|++||.|||+||+.||.+++.+|+.|++|++.+.++++.+.-
T Consensus 64 ~s~~ef~~Dv~Li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 110 (117)
T 2i7k_A 64 QSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKLLHSGMKILSQERL 110 (117)
T ss_dssp CSHHHHHHHHHHHHHHHHHTSCSSSSHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999987643
No 7
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=98.75 E-value=9.8e-09 Score=90.64 Aligned_cols=56 Identities=16% Similarity=0.119 Sum_probs=47.0
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCCccc
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQDSDDNEPET 57 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~Lr~~~e~~E~e~ 57 (517)
.++++|++||.|||+||+.||.+++.+|+.|++|++...+.+.++-.+.+-.+++|
T Consensus 77 ~s~~ef~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~~~~p~~~~ 132 (135)
T 2yyn_A 77 SKPEDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNLYPEKRFPKSGP 132 (135)
T ss_dssp SSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHSSSCCCC----
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhccccCCCCCCC
Confidence 37899999999999999999999999999999999999999988876665434433
No 8
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=98.73 E-value=1.1e-08 Score=88.76 Aligned_cols=47 Identities=19% Similarity=0.367 Sum_probs=43.6
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhc
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQ 48 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~Lr~ 48 (517)
.++++|.+||.|||+||+.||.+++.+|+.|++|+++..+.++.|..
T Consensus 77 ~~~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 123 (124)
T 3mb4_A 77 QDIDSMVEDFVMMFNNACTYNEPESLIYKDALVLHKVLLETRRDLEG 123 (124)
T ss_dssp CSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 37899999999999999999999999999999999998888888764
No 9
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=98.72 E-value=8.5e-09 Score=88.66 Aligned_cols=49 Identities=24% Similarity=0.364 Sum_probs=44.3
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhcCC
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQDS 50 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~Lr~~~ 50 (517)
.++++|.+||.||++||+.||.+++.+|+.|++|++...+.+.++..+.
T Consensus 70 ~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~p~~~ 118 (120)
T 3jvl_A 70 RDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDEP 118 (120)
T ss_dssp CSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTTCCC--
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 3789999999999999999999999999999999999999998887544
No 10
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=98.71 E-value=2.6e-09 Score=97.06 Aligned_cols=57 Identities=21% Similarity=0.296 Sum_probs=50.6
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCCcccc
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQDSDDNEPETK 58 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~Lr~~~e~~E~e~k 58 (517)
.++++|.+||.|||+||+.||.+++.||+.|++|++.+.+.++.++......|....
T Consensus 86 ~s~~ef~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~~~~~l~e~~~~l~~le~~i~ 142 (158)
T 3uv4_A 86 QSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDIC 142 (158)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999999999999999998877665555444
No 11
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=98.71 E-value=1.3e-08 Score=86.68 Aligned_cols=47 Identities=21% Similarity=0.256 Sum_probs=43.4
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhc
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQ 48 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~Lr~ 48 (517)
.++++|++||.|||+||+.||.+++.+|+.|++|++...+.+.++..
T Consensus 63 ~s~~~f~~Dv~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 109 (112)
T 3d7c_A 63 VTRKLFVADLQRVIANCREYNPPDSEYCRCASALEKFFYFKLKEGGL 109 (112)
T ss_dssp CSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 37899999999999999999999999999999999999998887653
No 12
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=98.70 E-value=1.6e-08 Score=86.72 Aligned_cols=47 Identities=23% Similarity=0.289 Sum_probs=44.0
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhc
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQ 48 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~Lr~ 48 (517)
.++++|.+||.|||+||+.||.+++.+|+.|++|+++-.+.++.|-+
T Consensus 67 ~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~l~~ 113 (116)
T 3iu5_A 67 DDVNLLTADFQLLFNNAKSYYKPDSPEYKAACKLWDLYLRTRNEFVQ 113 (116)
T ss_dssp CSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999999999999999998888765
No 13
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=1.4e-08 Score=88.08 Aligned_cols=45 Identities=20% Similarity=0.267 Sum_probs=39.6
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHh
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENL 46 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~L 46 (517)
.++++|++||.|||+||+.||.+++.+|+.|++|++.-.+.++++
T Consensus 75 ~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 119 (123)
T 2dat_A 75 RSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQSG 119 (123)
T ss_dssp CSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 378999999999999999999999999999999997766655543
No 14
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=98.66 E-value=1.9e-08 Score=88.54 Aligned_cols=49 Identities=16% Similarity=0.290 Sum_probs=45.1
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhcCC
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQDS 50 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~Lr~~~ 50 (517)
.++++|.+||.|||+||+.||.+++.+|+.|++|++...+.++.|-...
T Consensus 79 ~s~~ef~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~~ 127 (130)
T 3k2j_A 79 ETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQQVMQAKKKELARRD 127 (130)
T ss_dssp SSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4789999999999999999999999999999999999999999885543
No 15
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=98.66 E-value=2.2e-08 Score=85.74 Aligned_cols=47 Identities=17% Similarity=0.156 Sum_probs=43.2
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhc
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQ 48 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~Lr~ 48 (517)
.++++|++||.|||+||+.||.+++.+|+.|++|++...+.++.+-+
T Consensus 69 ~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 115 (117)
T 3g0l_A 69 PNLETFALDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKWTDTFK 115 (117)
T ss_dssp CSHHHHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 37899999999999999999999999999999999999888887643
No 16
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=98.66 E-value=2.2e-08 Score=86.33 Aligned_cols=46 Identities=26% Similarity=0.351 Sum_probs=42.5
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHhh
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLR 47 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~Lr 47 (517)
.++++|.+||.|||+||+.||.+++.+|+.|++|++...+.+..+-
T Consensus 70 ~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~i~ 115 (120)
T 3ljw_A 70 KSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIFYMKKAEIE 115 (120)
T ss_dssp CSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 4789999999999999999999999999999999999888887764
No 17
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=98.65 E-value=2e-08 Score=88.22 Aligned_cols=47 Identities=26% Similarity=0.357 Sum_probs=43.3
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhc
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQ 48 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~Lr~ 48 (517)
.++++|++||.|||+||+.||.+++.+|+.|++|++...+.+.+|..
T Consensus 83 ~s~~ef~~Dv~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp~ 129 (130)
T 2ouo_A 83 RDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPD 129 (130)
T ss_dssp SSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 37899999999999999999999999999999999998888887653
No 18
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=98.64 E-value=2.4e-08 Score=85.70 Aligned_cols=47 Identities=19% Similarity=0.267 Sum_probs=43.1
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhc
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQ 48 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~Lr~ 48 (517)
.++++|.+||.|||+||+.||.+++.+|+.|++|++...+.++.+-+
T Consensus 70 ~~~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 116 (119)
T 3p1f_A 70 QEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQ 116 (119)
T ss_dssp SSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999998888877654
No 19
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=98.64 E-value=2.3e-08 Score=86.63 Aligned_cols=46 Identities=17% Similarity=0.251 Sum_probs=42.6
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHhh
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLR 47 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~Lr 47 (517)
.++++|++||.|||+||+.||.+++.+|+.|++|++...+.+..+.
T Consensus 69 ~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~p 114 (121)
T 1e6i_A 69 QKMEDFIYDARLVFNNCRMYNGENTSYYKYANRLEKFFNNKVKEIP 114 (121)
T ss_dssp SSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHTSG
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 3789999999999999999999999999999999999888887764
No 20
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=98.63 E-value=2.8e-08 Score=88.50 Aligned_cols=52 Identities=25% Similarity=0.299 Sum_probs=45.3
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQDSDDN 53 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~Lr~~~e~~ 53 (517)
.++++|++||.|||+||+.||.+++.+|+.|++|++...+.++.|...+|..
T Consensus 87 ~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~pd~d 138 (150)
T 3tlp_A 87 AGEEGMIEDMKLMFRNARHYNEEGSQVYNDAHILEKLLKEKRKELGPLPDDD 138 (150)
T ss_dssp SSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHCCC----
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCCCChh
Confidence 4789999999999999999999999999999999999999999888666543
No 21
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=98.63 E-value=2.2e-08 Score=87.59 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=42.7
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhc
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQ 48 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~Lr~ 48 (517)
.++++|.+||.|||+||+.||.+++.+|+.|++|++...+.+.+|..
T Consensus 79 ~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp~ 125 (127)
T 2oss_A 79 WNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPT 125 (127)
T ss_dssp SSHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 37899999999999999999999999999999999998888776654
No 22
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=98.61 E-value=2.9e-08 Score=86.10 Aligned_cols=49 Identities=10% Similarity=0.013 Sum_probs=43.9
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhcCC
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQDS 50 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~Lr~~~ 50 (517)
.++++|.+||.|||+||+.||.+++.+|+.|++|++.-.+.++.++...
T Consensus 71 ~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~~l 119 (126)
T 3mqm_A 71 KTVEAFDADMLKVFRNAEKYYGRKSPVGRDVCRLRKAYYNARHEASAQI 119 (126)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999998888877766543
No 23
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=98.61 E-value=2.7e-08 Score=85.09 Aligned_cols=44 Identities=11% Similarity=0.133 Sum_probs=40.5
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHH
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFEN 45 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~ 45 (517)
.++++|.+||.||++||+.||.+++.+|+.|++|++.-.+.+++
T Consensus 72 ~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 72 CTKEEFVNDMKTMFRNCRKYNGESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 37899999999999999999999999999999999988877753
No 24
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=98.55 E-value=6.4e-08 Score=88.33 Aligned_cols=46 Identities=20% Similarity=0.153 Sum_probs=43.0
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHhh
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLR 47 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~Lr 47 (517)
.++++|.+||.|||+||+.||.+++.+|+.|++|++...+.|..+.
T Consensus 79 ~s~~ef~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 79 AYPSEFVKDVQLIFDNCSLYNTSNSVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp CSHHHHHHHHHHHHHHHHHSSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 3789999999999999999999999999999999999988888765
No 25
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=98.53 E-value=7.7e-08 Score=84.38 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=42.3
Q ss_pred cChhhhhhhHHHHHhhhhccCCC-CchHHHHHHHHHHHHHHHHHHhhc
Q 010122 2 FGCILTQKDVFLICSNAMQYNAP-DTIYFRQARSIHELAKKNFENLRQ 48 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~p-DTIYykaA~~l~e~~~k~f~~Lr~ 48 (517)
.++++|.+||.|||.||+.||.+ ++.+|+.|++|++...+.+..+-.
T Consensus 77 ~~~~~f~~D~~li~~Na~~yN~~~~s~i~~~A~~L~~~f~~~~~~~~~ 124 (135)
T 3mb3_A 77 ESPMELCKDVRLIFSNSKAYTPSKRSRIYSMSLRLSAFFEEHISSVLS 124 (135)
T ss_dssp SSHHHHHHHHHHHHHHHHHHSCCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999998 899999999999988888777543
No 26
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=98.48 E-value=1.4e-07 Score=81.72 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=44.5
Q ss_pred cChhhhhhhHHHHHhhhhccCCC-CchHHHHHHHHHHHHHHHHHHhhcCCC
Q 010122 2 FGCILTQKDVFLICSNAMQYNAP-DTIYFRQARSIHELAKKNFENLRQDSD 51 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~p-DTIYykaA~~l~e~~~k~f~~Lr~~~e 51 (517)
.++++|.+||.|||.||+.||.+ ++.+|+.|++|++...+.++++..+..
T Consensus 66 ~~~~~f~~D~~li~~Na~~yN~~~~s~i~~~A~~L~~~f~~~~~~~~~~~~ 116 (123)
T 3q2e_A 66 DSPLEFCKDIRLIFSNAKAYTPNKRSKIYSMTLRLSALFEEKMKKISSDFK 116 (123)
T ss_dssp SSHHHHHHHHHHHHHHHHHHSCCTTSHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999996 999999999999998888888765543
No 27
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=98.43 E-value=3.3e-08 Score=97.02 Aligned_cols=59 Identities=20% Similarity=0.286 Sum_probs=51.1
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccc
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQDSDDNEPETKVV 60 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~Lr~~~e~~E~e~k~~ 60 (517)
.++++|.+||.|||+||+.||.+++.+|+.|++|++...+.++.+...+...|.+...+
T Consensus 226 ~s~~~f~~D~~Li~~Na~~yN~~~s~i~~~A~~L~~~~~~~~~~~~~~l~~le~~i~~~ 284 (292)
T 3aad_A 226 QSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDICTA 284 (292)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999887666555554433
No 28
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=98.39 E-value=6.1e-08 Score=93.53 Aligned_cols=55 Identities=22% Similarity=0.327 Sum_probs=48.9
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCCcc
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQDSDDNEPE 56 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~Lr~~~e~~E~e 56 (517)
.++++|.+||.|||+||+.||.+++.+|+.|++|++...+.+..++......|.+
T Consensus 193 ~~~~~f~~D~~lif~Na~~yN~~~s~~~~~A~~l~~~~~~~~~~~~~~~~~~e~~ 247 (265)
T 3uv5_A 193 QSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKD 247 (265)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999999999999988766544443
No 29
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=98.38 E-value=2.6e-07 Score=91.86 Aligned_cols=44 Identities=16% Similarity=0.259 Sum_probs=41.0
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHH
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFEN 45 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~ 45 (517)
.++++|++||.|||+||+.||.+++.+|+.|++|++...+.+++
T Consensus 219 ~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~ 262 (311)
T 2r0y_A 219 SKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQK 262 (311)
T ss_dssp CBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999988887776
No 30
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=98.31 E-value=4.2e-07 Score=90.33 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=41.8
Q ss_pred ChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHhh
Q 010122 3 GCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLR 47 (517)
Q Consensus 3 sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~Lr 47 (517)
++++|+.||.|||+||+.||.+++.+|++|++|+++..+.+.+.+
T Consensus 86 s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~l~~~~~~~~~k~k 130 (311)
T 2r0y_A 86 GPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVMLIEFEVLKAK 130 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 689999999999999999999999999999999999888777654
No 31
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=3.7e-07 Score=80.72 Aligned_cols=49 Identities=27% Similarity=0.314 Sum_probs=39.4
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchH----HHHHHHHHHHHHHHH-HHhhcCC
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIY----FRQARSIHELAKKNF-ENLRQDS 50 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIY----ykaA~~l~e~~~k~f-~~Lr~~~ 50 (517)
.++++|.+||.|||+||+.||.+++.+ |..|.+|++....++ +.|....
T Consensus 63 ~s~~~f~~D~~Li~~Na~~yN~~~s~~~~~i~~~A~~L~~~~~~~l~~~l~~~f 116 (131)
T 2dkw_A 63 LTAKDFLKDIDLICSNALEYNPDKDPGDKIIRHRACTLKDTAHAIIAAELDPEF 116 (131)
T ss_dssp CSSHHHHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHHHHHHHHSCTTT
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999854 567799998887776 3454433
No 32
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=98.27 E-value=4.4e-07 Score=91.54 Aligned_cols=44 Identities=16% Similarity=0.259 Sum_probs=41.1
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHH
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFEN 45 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~ 45 (517)
.++++|++||.|||+||+.||.+++.+|+.|++|++...+.+++
T Consensus 269 ~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~ 312 (361)
T 2r10_A 269 SKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQK 312 (361)
T ss_dssp CBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999988888776
No 33
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=98.26 E-value=5.8e-07 Score=90.66 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=41.4
Q ss_pred ChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHhh
Q 010122 3 GCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLR 47 (517)
Q Consensus 3 sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~Lr 47 (517)
++++|+.||.|||+||+.||.+++.+|+.|++|+++..+.+.+.+
T Consensus 136 ~~~~f~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~~~~~~~k~k 180 (361)
T 2r10_A 136 GPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVMLIEFEVLKAK 180 (361)
T ss_dssp HHHHHHHHHHHHHHHHHHHBCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 689999999999999999999999999999999999888776654
No 34
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=98.20 E-value=1e-06 Score=84.95 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=43.9
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhcC
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQD 49 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~Lr~~ 49 (517)
.++++|.+||.|||+||+.||.+++.+|+.|++|++...+.+..+...
T Consensus 70 ~~~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~l~~~~~~~~~~~~~~ 117 (265)
T 3uv5_A 70 PSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDK 117 (265)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CCHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHHHHhhh
Confidence 378999999999999999999999999999999999999888876543
No 35
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=98.19 E-value=1.4e-06 Score=76.13 Aligned_cols=43 Identities=26% Similarity=0.366 Sum_probs=38.7
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCc----hHHHHHHHHHHHHHHHHH
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDT----IYFRQARSIHELAKKNFE 44 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDT----IYykaA~~l~e~~~k~f~ 44 (517)
.++++|.+||.|||+||+.||.+++ +.|+.|..|++.+.+++.
T Consensus 66 ~~~~~f~~D~~li~~Na~~yN~~~s~~~~~i~~~A~~L~~~~~~~i~ 112 (130)
T 3dai_A 66 LTVKDYLRDIDLICSNALEYNPDRDPGDRLIRHRACALRDTAYAIIK 112 (130)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999987 558899999999988885
No 36
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=97.91 E-value=2.3e-06 Score=84.02 Aligned_cols=45 Identities=18% Similarity=0.243 Sum_probs=39.8
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHh
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENL 46 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~L 46 (517)
.++++|.+||.|||+||+.||.+++.+|+.|+.|++...+.+..+
T Consensus 103 ~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~~~~~~~~~ 147 (292)
T 3aad_A 103 PSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEK 147 (292)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTCSSSHHHHHHTHHHHTTTTTGGGS
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhhhcc
Confidence 478999999999999999999999999999999998866655443
No 37
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=97.91 E-value=1.1e-05 Score=73.84 Aligned_cols=50 Identities=18% Similarity=0.217 Sum_probs=45.8
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhcCCC
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQDSD 51 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~Lr~~~e 51 (517)
.++++|++||+|||+||+.||.+|..-|.-|..|+.+-.+.++.|-.+-+
T Consensus 65 ~sld~f~~D~~lmf~NAr~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~g~ 114 (147)
T 3iu6_A 65 RRLDLFQEHMFEVLERARRMNRTDSEIYEDAVELQQFFIKIRDELCKNGE 114 (147)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 47999999999999999999999999999999999998888888877644
No 38
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=97.38 E-value=1.9e-05 Score=73.58 Aligned_cols=36 Identities=19% Similarity=-0.066 Sum_probs=25.3
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHH
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHE 37 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e 37 (517)
.++++|.+||.||+.||+.||.+++.+|+.|..|+.
T Consensus 139 ~s~~~f~~Dv~li~~Na~~yN~~~s~v~~~A~~l~~ 174 (207)
T 3u5n_A 139 QIPDDFVADVRLIFKNCERFNEMMKVVQVYADTQEI 174 (207)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHh
Confidence 378999999999999999999977777777766664
No 39
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=95.58 E-value=0.013 Score=54.73 Aligned_cols=45 Identities=9% Similarity=0.129 Sum_probs=37.2
Q ss_pred cChhhhhhhHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHh
Q 010122 2 FGCILTQKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENL 46 (517)
Q Consensus 2 ~sleeFe~Df~Li~sNaM~YN~pDTIYykaA~~l~e~~~k~f~~L 46 (517)
.++++|..||.||+.||+.||.++.=..++...|..+=-+.|+++
T Consensus 120 ~s~~eF~~Dv~lIf~n~~~~~~~~~e~~~ag~~l~~~f~~~l~~v 164 (183)
T 3lqh_A 120 TSVLEFSDDIVKIIQAAINSDGGQPEIKKANSMVKSFFIRQMERV 164 (183)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhccCCChhhhhhhhHHHHHHHHHHHHH
Confidence 478999999999999999999999988888888877544444444
No 40
>1dum_A Magainin 2; antibiotic, dimer, amphipathic helix, membrane, vesicle, bilayer, antimicrobial protein; NMR {Synthetic} SCOP: j.4.1.1 PDB: 2mag_A
Probab=47.66 E-value=0.9 Score=30.62 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=13.7
Q ss_pred hcCCCCCccCCcccccCCC
Q 010122 232 RCLPAGVRFGPGWVVENDL 250 (517)
Q Consensus 232 ~~LP~g~~FG~GWVgE~e~ 250 (517)
+.|-.--|||..||||-.-
T Consensus 4 kylhsakkfgkawvgeimn 22 (26)
T 1dum_A 4 KYLHSAKKFGKAWVGEIMN 22 (26)
T ss_dssp STTTTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhHHHHHHHHh
Confidence 3445556899999999654
No 41
>3fke_A Polymerase cofactor VP35; RNA binding domain, coiled coil, interferon antiviral system evasion, RNA replication, RNA-binding; 1.40A {Zaire ebolavirus - mayinga} PDB: 3l25_A 3l26_A 3l28_A 3l27_A 3l29_A 3l2a_A
Probab=22.01 E-value=24 Score=31.67 Aligned_cols=17 Identities=29% Similarity=0.628 Sum_probs=14.9
Q ss_pred hcCCCCCccCCcccccC
Q 010122 232 RCLPAGVRFGPGWVVEN 248 (517)
Q Consensus 232 ~~LP~g~~FG~GWVgE~ 248 (517)
|.+|||-|.|+|||--|
T Consensus 101 R~vPp~Pki~rGWVciy 117 (129)
T 3fke_A 101 RPVPPSPKIDRGWVCVF 117 (129)
T ss_dssp ECCCSSCCGGGTEEEEE
T ss_pred CCCCCCCccCcceEEEE
Confidence 67899999999999655
Done!