Query 010123
Match_columns 517
No_of_seqs 365 out of 2567
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 21:19:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010123.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010123hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03520 GldE gliding motilit 100.0 2.4E-57 5.1E-62 481.6 36.8 285 41-336 2-301 (408)
2 PRK11573 hypothetical protein; 100.0 3.7E-56 8.1E-61 472.8 34.5 332 44-441 2-354 (413)
3 COG4536 CorB Putative Mg2+ and 100.0 2.7E-56 5.9E-61 451.8 24.9 286 36-330 5-308 (423)
4 COG1253 TlyC Hemolysins and re 100.0 3.3E-52 7.2E-57 445.1 35.7 309 36-391 6-336 (429)
5 KOG2118 Predicted membrane pro 100.0 2.1E-40 4.5E-45 357.9 11.9 420 24-461 3-440 (498)
6 PRK15094 magnesium/cobalt effl 100.0 4.6E-28 1E-32 247.0 19.2 155 174-336 23-179 (292)
7 PF01595 DUF21: Domain of unkn 99.9 4.5E-26 9.8E-31 215.5 21.8 167 37-211 3-183 (183)
8 COG4535 CorC Putative Mg2+ and 99.9 3.2E-25 6.9E-30 213.6 11.7 213 184-457 31-245 (293)
9 COG3448 CBS-domain-containing 99.7 7.5E-16 1.6E-20 153.3 19.4 136 184-327 202-353 (382)
10 TIGR00400 mgtE Mg2+ transporte 99.7 2.5E-16 5.5E-21 169.9 16.0 134 184-327 89-233 (449)
11 TIGR01302 IMP_dehydrog inosine 99.6 5.7E-15 1.2E-19 159.4 16.0 141 183-336 43-191 (450)
12 COG2524 Predicted transcriptio 99.6 2.8E-15 6E-20 146.9 10.1 108 215-327 163-272 (294)
13 COG4109 Predicted transcriptio 99.6 1.4E-14 3.1E-19 147.1 11.7 112 212-327 171-287 (432)
14 PRK05567 inosine 5'-monophosph 99.5 7.3E-13 1.6E-17 144.4 16.2 140 183-336 50-195 (486)
15 cd04603 CBS_pair_KefB_assoc Th 99.4 1.1E-12 2.4E-17 113.2 12.8 91 235-327 2-94 (111)
16 PRK10892 D-arabinose 5-phospha 99.4 6.9E-13 1.5E-17 137.1 12.6 104 222-327 200-307 (326)
17 COG2239 MgtE Mg/Co/Ni transpor 99.4 1.2E-12 2.6E-17 140.4 14.1 116 206-327 114-234 (451)
18 cd04623 CBS_pair_10 The CBS do 99.4 1.9E-12 4.1E-17 110.6 12.6 91 235-327 2-97 (113)
19 cd04605 CBS_pair_MET2_assoc Th 99.4 1.6E-12 3.4E-17 111.1 12.1 91 235-327 3-93 (110)
20 cd04626 CBS_pair_13 The CBS do 99.4 1.6E-12 3.5E-17 111.4 11.8 91 235-327 2-95 (111)
21 cd04641 CBS_pair_28 The CBS do 99.4 1.7E-12 3.6E-17 113.4 12.1 91 235-327 2-103 (120)
22 cd04619 CBS_pair_6 The CBS dom 99.4 2.3E-12 4.9E-17 111.7 12.0 91 235-327 2-97 (114)
23 cd04630 CBS_pair_17 The CBS do 99.4 3.8E-12 8.2E-17 110.0 13.1 92 235-327 2-98 (114)
24 COG3620 Predicted transcriptio 99.4 2E-12 4.3E-17 118.8 11.4 118 203-327 39-166 (187)
25 cd04596 CBS_pair_DRTGG_assoc T 99.4 3.4E-12 7.3E-17 109.2 11.6 90 234-327 2-91 (108)
26 cd04590 CBS_pair_CorC_HlyC_ass 99.4 3.9E-12 8.4E-17 108.9 11.9 92 234-327 1-94 (111)
27 cd04593 CBS_pair_EriC_assoc_ba 99.4 4.2E-12 9.2E-17 109.7 12.0 91 235-327 2-96 (115)
28 cd04618 CBS_pair_5 The CBS dom 99.4 4.2E-12 9.2E-17 108.4 11.7 79 235-327 2-80 (98)
29 PRK11543 gutQ D-arabinose 5-ph 99.4 2.2E-12 4.7E-17 132.9 11.6 103 223-327 196-301 (321)
30 cd04600 CBS_pair_HPP_assoc Thi 99.4 5.1E-12 1.1E-16 110.3 12.2 91 235-327 3-107 (124)
31 cd04631 CBS_pair_18 The CBS do 99.4 5.3E-12 1.1E-16 110.3 11.6 92 235-327 2-108 (125)
32 PRK07807 inosine 5-monophospha 99.4 5.3E-12 1.1E-16 137.1 13.7 100 222-327 87-186 (479)
33 cd04624 CBS_pair_11 The CBS do 99.4 6.9E-12 1.5E-16 107.5 11.7 91 235-327 2-95 (112)
34 cd04621 CBS_pair_8 The CBS dom 99.4 6.7E-12 1.4E-16 113.1 11.9 91 235-327 2-119 (135)
35 cd04599 CBS_pair_GGDEF_assoc2 99.4 8.8E-12 1.9E-16 105.4 11.8 88 235-327 2-89 (105)
36 cd04639 CBS_pair_26 The CBS do 99.4 6.9E-12 1.5E-16 107.3 11.2 91 235-327 2-94 (111)
37 cd04627 CBS_pair_14 The CBS do 99.3 7.9E-12 1.7E-16 109.6 11.6 92 235-327 2-106 (123)
38 cd04642 CBS_pair_29 The CBS do 99.3 7.8E-12 1.7E-16 110.2 11.4 91 235-327 2-109 (126)
39 PRK01862 putative voltage-gate 99.3 5E-12 1.1E-16 140.6 12.5 103 221-327 444-550 (574)
40 cd04803 CBS_pair_15 The CBS do 99.3 9.9E-12 2.1E-16 108.1 11.7 91 235-327 2-105 (122)
41 cd04643 CBS_pair_30 The CBS do 99.3 1.3E-11 2.9E-16 106.2 12.1 89 235-327 2-99 (116)
42 cd04801 CBS_pair_M50_like This 99.3 6.8E-12 1.5E-16 108.2 10.1 91 235-327 2-97 (114)
43 cd04613 CBS_pair_SpoIVFB_EriC_ 99.3 1.5E-11 3.2E-16 105.2 11.8 91 235-327 2-96 (114)
44 cd04611 CBS_pair_PAS_GGDEF_DUF 99.3 1.7E-11 3.7E-16 104.5 12.2 90 235-327 2-94 (111)
45 cd04617 CBS_pair_4 The CBS dom 99.3 1.3E-11 2.9E-16 107.5 11.6 91 235-327 2-98 (118)
46 cd04583 CBS_pair_ABC_OpuCA_ass 99.3 1.9E-11 4.1E-16 103.9 12.2 90 235-327 3-92 (109)
47 cd04612 CBS_pair_SpoIVFB_EriC_ 99.3 1.7E-11 3.7E-16 104.5 11.8 90 235-327 2-94 (111)
48 cd04589 CBS_pair_CAP-ED_DUF294 99.3 2E-11 4.3E-16 104.6 12.2 90 235-327 2-95 (111)
49 cd04588 CBS_pair_CAP-ED_DUF294 99.3 1.9E-11 4.2E-16 104.3 12.0 90 235-327 2-93 (110)
50 cd04636 CBS_pair_23 The CBS do 99.3 1.5E-11 3.3E-16 109.3 11.7 91 235-327 2-116 (132)
51 cd04607 CBS_pair_NTP_transfera 99.3 1.9E-11 4.1E-16 105.3 11.9 90 236-327 4-96 (113)
52 cd04635 CBS_pair_22 The CBS do 99.3 1.7E-11 3.6E-16 106.7 11.4 91 235-327 2-105 (122)
53 cd04640 CBS_pair_27 The CBS do 99.3 2E-11 4.4E-16 107.7 11.8 91 235-327 2-108 (126)
54 cd04595 CBS_pair_DHH_polyA_Pol 99.3 3E-11 6.6E-16 103.3 12.2 90 235-327 3-94 (110)
55 cd04594 CBS_pair_EriC_assoc_ar 99.3 3.6E-11 7.7E-16 102.5 12.4 85 237-327 4-88 (104)
56 cd04800 CBS_pair_CAP-ED_DUF294 99.3 3.4E-11 7.3E-16 103.0 12.3 90 235-327 2-95 (111)
57 cd04582 CBS_pair_ABC_OpuCA_ass 99.3 3.5E-11 7.6E-16 102.0 12.2 88 235-327 2-89 (106)
58 cd04610 CBS_pair_ParBc_assoc T 99.3 3.5E-11 7.5E-16 102.1 12.1 88 235-327 3-90 (107)
59 cd04632 CBS_pair_19 The CBS do 99.3 2.8E-11 6.1E-16 106.6 11.9 91 235-327 2-109 (128)
60 cd04601 CBS_pair_IMPDH This cd 99.3 2.5E-11 5.5E-16 103.2 11.1 90 235-327 3-93 (110)
61 cd04638 CBS_pair_25 The CBS do 99.3 5.4E-11 1.2E-15 101.2 12.8 89 235-327 2-90 (106)
62 cd04629 CBS_pair_16 The CBS do 99.3 2.3E-11 5.1E-16 104.3 10.6 91 235-327 2-98 (114)
63 cd04606 CBS_pair_Mg_transporte 99.3 2.5E-11 5.4E-16 104.0 10.6 85 239-327 2-91 (109)
64 cd04586 CBS_pair_BON_assoc Thi 99.3 2.3E-11 5.1E-16 108.5 10.9 91 235-327 3-119 (135)
65 cd04602 CBS_pair_IMPDH_2 This 99.3 3.5E-11 7.6E-16 104.1 11.5 91 235-327 3-97 (114)
66 cd04615 CBS_pair_2 The CBS dom 99.3 4.5E-11 9.8E-16 102.5 11.9 90 236-327 3-96 (113)
67 cd04608 CBS_pair_PALP_assoc Th 99.3 1.5E-11 3.3E-16 109.1 9.1 82 235-318 3-88 (124)
68 cd04585 CBS_pair_ACT_assoc2 Th 99.3 4.2E-11 9.2E-16 103.4 11.7 90 235-327 2-105 (122)
69 cd04604 CBS_pair_KpsF_GutQ_ass 99.3 4E-11 8.6E-16 102.7 11.1 91 235-327 3-97 (114)
70 cd04614 CBS_pair_1 The CBS dom 99.3 6.3E-11 1.4E-15 100.4 12.0 78 235-327 2-79 (96)
71 cd04802 CBS_pair_3 The CBS dom 99.3 7E-11 1.5E-15 101.2 12.4 90 235-327 2-96 (112)
72 cd04620 CBS_pair_7 The CBS dom 99.3 4.9E-11 1.1E-15 102.8 11.2 90 235-327 2-98 (115)
73 cd04587 CBS_pair_CAP-ED_DUF294 99.3 5.1E-11 1.1E-15 102.0 11.2 90 235-327 2-96 (113)
74 cd04591 CBS_pair_EriC_assoc_eu 99.3 5.2E-11 1.1E-15 102.4 11.1 86 234-327 2-89 (105)
75 TIGR01303 IMP_DH_rel_1 IMP deh 99.3 1E-10 2.2E-15 127.0 15.8 99 222-327 86-184 (475)
76 cd04637 CBS_pair_24 The CBS do 99.2 5E-11 1.1E-15 103.8 11.0 90 235-327 2-105 (122)
77 PLN02274 inosine-5'-monophosph 99.2 8.4E-11 1.8E-15 128.6 15.1 144 184-336 64-212 (505)
78 cd04622 CBS_pair_9 The CBS dom 99.2 8.9E-11 1.9E-15 100.5 12.2 90 235-327 2-96 (113)
79 TIGR01137 cysta_beta cystathio 99.2 4.9E-11 1.1E-15 128.7 13.0 100 221-327 332-435 (454)
80 cd04625 CBS_pair_12 The CBS do 99.2 1.1E-10 2.5E-15 99.9 12.3 90 235-327 2-96 (112)
81 PRK07107 inosine 5-monophospha 99.2 5E-11 1.1E-15 130.1 12.0 99 237-336 108-210 (502)
82 cd04584 CBS_pair_ACT_assoc Thi 99.2 1.1E-10 2.4E-15 101.1 11.6 91 235-327 2-105 (121)
83 cd04609 CBS_pair_PALP_assoc2 T 99.2 1.4E-10 3.1E-15 98.4 11.8 88 235-327 2-93 (110)
84 cd04633 CBS_pair_20 The CBS do 99.2 1.1E-10 2.4E-15 101.3 11.0 90 235-327 2-105 (121)
85 PTZ00314 inosine-5'-monophosph 99.2 1.2E-10 2.7E-15 127.1 13.7 144 184-336 60-208 (495)
86 cd02205 CBS_pair The CBS domai 99.2 2.9E-10 6.3E-15 95.4 12.2 91 235-327 2-96 (113)
87 cd04634 CBS_pair_21 The CBS do 99.2 2.7E-10 5.9E-15 103.3 11.7 90 235-327 2-127 (143)
88 TIGR00393 kpsF KpsF/GutQ famil 99.2 1.6E-10 3.4E-15 115.9 10.6 102 224-328 155-259 (268)
89 cd04598 CBS_pair_GGDEF_assoc T 99.1 3.4E-10 7.4E-15 97.9 11.1 90 235-327 2-102 (119)
90 COG0517 FOG: CBS domain [Gener 99.1 6.8E-10 1.5E-14 95.4 12.3 96 227-327 2-101 (117)
91 COG2905 Predicted signal-trans 99.0 8.5E-10 1.8E-14 118.7 9.1 105 219-327 144-252 (610)
92 cd04592 CBS_pair_EriC_assoc_eu 98.9 3.1E-09 6.8E-14 96.1 9.0 94 235-330 2-119 (133)
93 PRK14869 putative manganese-de 98.8 1.3E-08 2.8E-13 112.7 11.2 56 223-282 67-122 (546)
94 PF00571 CBS: CBS domain CBS d 98.6 8E-08 1.7E-12 73.4 6.1 37 291-327 1-37 (57)
95 PF00571 CBS: CBS domain CBS d 98.5 1.6E-07 3.5E-12 71.7 5.3 55 226-284 1-55 (57)
96 PRK10070 glycine betaine trans 98.4 2.7E-06 5.8E-11 91.0 13.3 100 224-327 274-374 (400)
97 KOG1764 5'-AMP-activated prote 98.3 2.5E-06 5.4E-11 90.6 11.1 91 235-327 238-340 (381)
98 TIGR01186 proV glycine betaine 98.3 1.1E-05 2.4E-10 85.3 13.9 87 237-327 253-339 (363)
99 KOG0474 Cl- channel CLC-7 and 98.2 2.3E-06 5.1E-11 93.4 6.6 104 221-327 579-728 (762)
100 KOG2550 IMP dehydrogenase/GMP 98.1 9.9E-06 2.1E-10 84.8 8.1 148 183-339 71-221 (503)
101 TIGR00400 mgtE Mg2+ transporte 97.9 1E-05 2.2E-10 87.9 4.6 100 222-327 193-292 (449)
102 cd04603 CBS_pair_KefB_assoc Th 97.7 7.8E-05 1.7E-09 64.0 6.2 56 223-282 55-110 (111)
103 cd04604 CBS_pair_KpsF_GutQ_ass 97.6 0.00015 3.2E-09 61.7 6.7 59 220-282 55-113 (114)
104 COG2524 Predicted transcriptio 97.6 9.6E-05 2.1E-09 73.6 5.5 40 288-327 171-210 (294)
105 cd04597 CBS_pair_DRTGG_assoc2 97.6 0.0002 4.4E-09 62.4 6.8 55 224-282 58-112 (113)
106 cd04801 CBS_pair_M50_like This 97.5 0.00015 3.2E-09 62.2 5.5 58 223-282 56-113 (114)
107 cd04617 CBS_pair_4 The CBS dom 97.5 0.00017 3.8E-09 62.5 5.9 61 221-282 55-117 (118)
108 PRK07107 inosine 5-monophospha 97.5 0.00031 6.7E-09 77.3 9.2 100 221-325 158-260 (502)
109 cd04619 CBS_pair_6 The CBS dom 97.5 0.00018 3.9E-09 61.9 5.9 57 222-282 57-113 (114)
110 cd04597 CBS_pair_DRTGG_assoc2 97.5 0.0002 4.4E-09 62.5 6.1 39 289-327 58-96 (113)
111 PRK14869 putative manganese-de 97.4 0.00017 3.7E-09 80.1 6.0 111 222-336 244-383 (546)
112 cd04607 CBS_pair_NTP_transfera 97.3 0.00041 8.9E-09 59.3 6.0 56 223-282 57-112 (113)
113 cd04585 CBS_pair_ACT_assoc2 Th 97.3 0.00039 8.4E-09 59.6 5.8 58 221-282 64-121 (122)
114 COG3448 CBS-domain-containing 97.3 0.00023 5E-09 72.1 4.2 41 288-328 244-284 (382)
115 cd04618 CBS_pair_5 The CBS dom 97.3 0.0006 1.3E-08 57.9 6.1 46 236-282 52-97 (98)
116 cd04640 CBS_pair_27 The CBS do 97.3 0.0004 8.6E-09 61.0 5.0 60 222-282 62-125 (126)
117 PRK07807 inosine 5-monophospha 97.2 0.00098 2.1E-08 73.0 9.0 95 224-327 148-246 (479)
118 cd04610 CBS_pair_ParBc_assoc T 97.2 0.0006 1.3E-08 57.3 5.9 56 223-282 51-106 (107)
119 cd04582 CBS_pair_ABC_OpuCA_ass 97.2 0.00086 1.9E-08 56.4 6.8 54 225-282 52-105 (106)
120 PRK05567 inosine 5'-monophosph 97.2 0.0012 2.6E-08 72.6 9.6 110 223-338 146-259 (486)
121 cd04600 CBS_pair_HPP_assoc Thi 97.2 0.00063 1.4E-08 58.9 6.0 58 221-282 66-123 (124)
122 cd04625 CBS_pair_12 The CBS do 97.2 0.00069 1.5E-08 57.6 5.9 55 223-282 57-111 (112)
123 cd04630 CBS_pair_17 The CBS do 97.2 0.00077 1.7E-08 57.8 6.1 56 222-282 58-113 (114)
124 KOG0475 Cl- channel CLC-3 and 97.2 0.0019 4.1E-08 71.3 10.3 102 225-327 544-677 (696)
125 cd04623 CBS_pair_10 The CBS do 97.2 0.00085 1.8E-08 56.8 6.0 55 223-282 58-112 (113)
126 cd04627 CBS_pair_14 The CBS do 97.2 0.00091 2E-08 58.3 6.3 52 226-281 70-121 (123)
127 cd04620 CBS_pair_7 The CBS dom 97.2 0.00088 1.9E-08 57.3 6.1 56 223-282 57-114 (115)
128 PRK10892 D-arabinose 5-phospha 97.2 0.00072 1.6E-08 70.1 6.5 58 221-283 266-323 (326)
129 PLN02274 inosine-5'-monophosph 97.2 0.0012 2.6E-08 72.8 8.6 101 222-327 161-267 (505)
130 cd04613 CBS_pair_SpoIVFB_EriC_ 97.1 0.0009 1.9E-08 56.7 5.9 57 223-282 57-113 (114)
131 cd04596 CBS_pair_DRTGG_assoc T 97.1 0.00094 2E-08 56.7 5.9 57 222-282 51-107 (108)
132 cd04615 CBS_pair_2 The CBS dom 97.1 0.001 2.2E-08 56.6 6.0 57 222-282 56-112 (113)
133 TIGR03520 GldE gliding motilit 97.1 0.056 1.2E-06 58.2 20.7 41 287-327 189-231 (408)
134 cd04631 CBS_pair_18 The CBS do 97.1 0.001 2.2E-08 57.7 5.7 58 221-282 67-124 (125)
135 cd04622 CBS_pair_9 The CBS dom 97.1 0.0012 2.7E-08 56.0 6.1 56 223-282 57-112 (113)
136 cd04621 CBS_pair_8 The CBS dom 97.1 0.0011 2.5E-08 59.4 6.2 56 222-282 79-134 (135)
137 cd04601 CBS_pair_IMPDH This cd 97.1 0.0012 2.6E-08 55.7 6.0 56 223-282 53-109 (110)
138 COG0517 FOG: CBS domain [Gener 97.1 0.0019 4.2E-08 55.0 7.3 53 225-281 63-117 (117)
139 smart00116 CBS Domain in cysta 97.1 0.0015 3.3E-08 45.9 5.6 29 299-327 2-30 (49)
140 cd04803 CBS_pair_15 The CBS do 97.1 0.0014 2.9E-08 56.6 6.2 58 221-282 64-121 (122)
141 cd04641 CBS_pair_28 The CBS do 97.0 0.0015 3.3E-08 56.6 6.5 53 226-282 67-119 (120)
142 cd04587 CBS_pair_CAP-ED_DUF294 97.0 0.001 2.2E-08 56.5 5.3 55 224-282 58-112 (113)
143 cd04636 CBS_pair_23 The CBS do 97.0 0.0012 2.6E-08 58.3 5.9 56 222-282 76-131 (132)
144 cd04626 CBS_pair_13 The CBS do 97.0 0.0014 3E-08 55.7 6.1 55 223-282 56-110 (111)
145 cd04593 CBS_pair_EriC_assoc_ba 97.0 0.0016 3.4E-08 55.8 6.4 56 224-282 58-114 (115)
146 cd04594 CBS_pair_EriC_assoc_ar 97.0 0.0016 3.5E-08 55.0 6.4 54 224-282 50-103 (104)
147 TIGR01303 IMP_DH_rel_1 IMP deh 97.0 0.0025 5.3E-08 69.9 9.3 95 224-327 146-244 (475)
148 PRK11543 gutQ D-arabinose 5-ph 97.0 0.0014 2.9E-08 67.8 7.0 57 223-283 262-318 (321)
149 cd04612 CBS_pair_SpoIVFB_EriC_ 97.0 0.0017 3.7E-08 54.8 6.5 55 224-282 56-110 (111)
150 cd04633 CBS_pair_20 The CBS do 97.0 0.00099 2.2E-08 57.4 5.1 57 221-282 64-120 (121)
151 cd04595 CBS_pair_DHH_polyA_Pol 97.0 0.0017 3.7E-08 55.1 6.3 56 222-282 54-109 (110)
152 cd04606 CBS_pair_Mg_transporte 97.0 0.0015 3.3E-08 55.5 5.9 57 223-283 52-108 (109)
153 PTZ00314 inosine-5'-monophosph 97.0 0.0021 4.5E-08 70.8 8.4 100 222-325 157-259 (495)
154 cd04583 CBS_pair_ABC_OpuCA_ass 97.0 0.0016 3.5E-08 54.8 6.0 55 224-282 54-108 (109)
155 cd04602 CBS_pair_IMPDH_2 This 97.0 0.0013 2.9E-08 56.4 5.5 57 224-282 57-113 (114)
156 cd04584 CBS_pair_ACT_assoc Thi 97.0 0.0015 3.3E-08 56.1 5.7 57 221-282 64-120 (121)
157 cd04589 CBS_pair_CAP-ED_DUF294 97.0 0.0018 3.8E-08 55.1 5.9 56 222-282 55-110 (111)
158 cd04639 CBS_pair_26 The CBS do 96.9 0.0016 3.5E-08 55.2 5.7 55 224-282 56-110 (111)
159 cd04635 CBS_pair_22 The CBS do 96.9 0.0016 3.6E-08 56.1 5.7 57 222-282 65-121 (122)
160 KOG1764 5'-AMP-activated prote 96.9 0.0046 1E-07 65.9 10.1 99 231-330 159-270 (381)
161 cd04611 CBS_pair_PAS_GGDEF_DUF 96.9 0.0021 4.6E-08 54.2 6.2 57 222-282 54-110 (111)
162 cd04643 CBS_pair_30 The CBS do 96.9 0.0015 3.2E-08 55.7 5.0 55 222-282 61-115 (116)
163 cd04599 CBS_pair_GGDEF_assoc2 96.9 0.002 4.3E-08 53.9 5.7 54 223-281 50-103 (105)
164 cd04586 CBS_pair_BON_assoc Thi 96.9 0.0015 3.3E-08 57.9 5.2 57 221-282 78-134 (135)
165 cd04802 CBS_pair_3 The CBS dom 96.9 0.0021 4.6E-08 54.5 5.9 56 222-282 56-111 (112)
166 COG3620 Predicted transcriptio 96.8 0.0015 3.2E-08 61.0 4.8 39 289-327 65-103 (187)
167 cd04629 CBS_pair_16 The CBS do 96.8 0.0018 4E-08 55.0 5.2 55 223-282 59-113 (114)
168 cd04637 CBS_pair_24 The CBS do 96.8 0.0021 4.5E-08 55.6 5.6 55 224-282 67-121 (122)
169 cd04592 CBS_pair_EriC_assoc_eu 96.8 0.0038 8.3E-08 56.3 7.2 30 298-327 2-31 (133)
170 smart00116 CBS Domain in cysta 96.8 0.0029 6.3E-08 44.4 5.2 46 236-283 2-47 (49)
171 cd04800 CBS_pair_CAP-ED_DUF294 96.8 0.0028 6.2E-08 53.7 5.7 55 223-282 56-110 (111)
172 TIGR03415 ABC_choXWV_ATP choli 96.7 0.0062 1.3E-07 65.0 9.3 98 214-327 264-362 (382)
173 cd04624 CBS_pair_11 The CBS do 96.7 0.0048 1E-07 52.3 6.9 56 223-282 56-111 (112)
174 cd04642 CBS_pair_29 The CBS do 96.7 0.004 8.7E-08 54.5 6.5 51 228-282 75-125 (126)
175 cd04632 CBS_pair_19 The CBS do 96.7 0.0031 6.6E-08 55.2 5.6 58 222-282 69-127 (128)
176 cd04614 CBS_pair_1 The CBS dom 96.7 0.0041 8.9E-08 52.3 6.0 45 236-282 51-95 (96)
177 cd04605 CBS_pair_MET2_assoc Th 96.6 0.0064 1.4E-07 51.4 7.1 54 225-282 56-109 (110)
178 cd04590 CBS_pair_CorC_HlyC_ass 96.6 0.0042 9.2E-08 52.6 5.7 53 225-282 58-110 (111)
179 cd04588 CBS_pair_CAP-ED_DUF294 96.6 0.0048 1E-07 52.2 6.0 55 224-282 55-109 (110)
180 TIGR01137 cysta_beta cystathio 96.6 0.0048 1E-07 66.8 7.3 40 288-327 334-373 (454)
181 cd04608 CBS_pair_PALP_assoc Th 96.6 0.0076 1.7E-07 53.1 7.3 31 297-327 2-32 (124)
182 COG4175 ProV ABC-type proline/ 96.5 0.0068 1.5E-07 62.7 7.1 104 211-327 261-364 (386)
183 PRK01862 putative voltage-gate 96.5 0.0055 1.2E-07 68.7 7.1 59 223-284 511-570 (574)
184 COG2905 Predicted signal-trans 96.5 0.0038 8.2E-08 68.4 5.4 74 204-284 193-269 (610)
185 TIGR00393 kpsF KpsF/GutQ famil 96.4 0.0072 1.6E-07 60.6 6.7 39 289-327 155-194 (268)
186 cd04591 CBS_pair_EriC_assoc_eu 96.4 0.0082 1.8E-07 51.3 6.0 49 229-282 56-104 (105)
187 cd04598 CBS_pair_GGDEF_assoc T 96.3 0.0068 1.5E-07 52.0 5.2 57 222-282 59-118 (119)
188 cd04634 CBS_pair_21 The CBS do 96.3 0.0075 1.6E-07 54.4 5.7 56 222-282 87-142 (143)
189 cd04638 CBS_pair_25 The CBS do 96.1 0.013 2.9E-07 49.2 5.8 53 225-282 53-105 (106)
190 cd04609 CBS_pair_PALP_assoc2 T 96.0 0.011 2.4E-07 49.6 5.1 54 223-282 56-109 (110)
191 TIGR01302 IMP_dehydrog inosine 96.0 0.011 2.4E-07 64.4 6.1 60 222-284 141-200 (450)
192 cd02205 CBS_pair The CBS domai 95.9 0.027 5.8E-07 46.6 7.0 53 226-282 60-112 (113)
193 PRK15094 magnesium/cobalt effl 95.9 0.019 4E-07 59.2 6.8 86 225-316 134-228 (292)
194 PRK11573 hypothetical protein; 95.4 1.6 3.4E-05 47.3 19.8 40 288-327 186-227 (413)
195 COG1253 TlyC Hemolysins and re 94.8 1.3 2.7E-05 48.2 16.9 40 288-327 205-246 (429)
196 COG4109 Predicted transcriptio 94.5 0.078 1.7E-06 55.5 6.4 60 222-285 247-306 (432)
197 COG2239 MgtE Mg/Co/Ni transpor 94.5 0.037 8E-07 60.3 4.2 61 220-284 192-252 (451)
198 TIGR01186 proV glycine betaine 92.6 0.26 5.6E-06 52.4 6.6 58 223-285 301-358 (363)
199 KOG2550 IMP dehydrogenase/GMP 91.2 0.22 4.8E-06 53.0 4.1 101 220-327 167-270 (503)
200 COG1125 OpuBA ABC-type proline 90.5 1.9 4.2E-05 43.9 9.8 82 236-327 189-291 (309)
201 PRK10070 glycine betaine trans 89.2 0.82 1.8E-05 49.3 6.5 58 223-285 336-393 (400)
202 COG4536 CorB Putative Mg2+ and 76.8 10 0.00023 40.4 8.1 60 222-283 263-322 (423)
203 TIGR03415 ABC_choXWV_ATP choli 58.1 15 0.00032 39.5 4.9 55 223-284 325-379 (382)
204 KOG0474 Cl- channel CLC-7 and 53.1 18 0.0004 41.0 4.7 53 227-283 693-745 (762)
205 KOG0476 Cl- channel CLC-2 and 52.4 12 0.00027 43.1 3.2 60 222-284 586-646 (931)
206 PF14163 SieB: Superinfection 51.1 54 0.0012 30.2 6.9 38 206-258 78-115 (151)
207 COG1125 OpuBA ABC-type proline 47.3 28 0.00061 35.7 4.6 59 222-282 247-307 (309)
208 PF01595 DUF21: Domain of unkn 45.6 2.5E+02 0.0054 25.9 14.9 12 165-176 131-142 (183)
209 COG4535 CorC Putative Mg2+ and 43.3 54 0.0012 33.2 5.7 87 226-318 135-230 (293)
210 COG2216 KdpB High-affinity K+ 39.8 36 0.00078 38.0 4.3 33 248-282 417-449 (681)
211 KOG0476 Cl- channel CLC-2 and 34.8 54 0.0012 38.2 4.8 39 289-327 588-626 (931)
212 KOG0475 Cl- channel CLC-3 and 31.8 71 0.0015 36.5 5.0 53 226-283 641-693 (696)
213 COG4175 ProV ABC-type proline/ 30.7 63 0.0014 34.2 4.2 48 235-285 336-383 (386)
214 PF03563 Bunya_G2: Bunyavirus 30.4 1.3E+02 0.0028 30.9 6.1 24 154-177 210-233 (285)
215 PLN03140 ABC transporter G fam 23.3 1.7E+03 0.036 28.6 16.6 50 3-59 544-593 (1470)
216 PF15284 PAGK: Phage-encoded v 22.5 98 0.0021 24.6 2.9 24 38-61 8-31 (61)
217 TIGR00827 EIIC-GAT PTS system, 21.8 3.3E+02 0.0071 29.7 7.7 65 125-194 145-210 (407)
218 PF15086 UPF0542: Uncharacteri 21.2 3.9E+02 0.0085 22.1 6.2 10 43-52 33-42 (74)
No 1
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=100.00 E-value=2.4e-57 Score=481.60 Aligned_cols=285 Identities=25% Similarity=0.466 Sum_probs=249.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH----HHHH
Q 010123 41 CVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTSTEKQQAAAILPVVQKQHQLLVTLLLCNACAMEALPIYL----DKIF 116 (517)
Q Consensus 41 ~~LillsafFSg~E~Al~Sl~~~rL~~la~~g~~~~kk~A~~il~l~~~~~~lL~TlLlgn~la~~~l~~~l----~~l~ 116 (517)
++|+++||||||+|+|++|+++.+++.++++|+ ++|+++++++++|+++++|+++||+++|.+.+.+. ..+|
T Consensus 2 ~~li~lsa~Fs~~E~Al~s~~~~~l~~l~~~~~----~~a~~~~~l~~~~~~~L~tiligntl~ni~~~~~~~~~~~~~~ 77 (408)
T TIGR03520 2 ILLLLLSALVSGSEVAFFSLSPTDLNDEEEDNS----KKEQIVINLLDRPKKLLATILIANNFINIAIVLLFTSLSDNLF 77 (408)
T ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCC----HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457789999999999999999999999999987 36788999999999999999999999988766543 3334
Q ss_pred HH----H----HHHHHHHHHHHHHhhhchhhHHHHhhhHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHH---hCCCCccc
Q 010123 117 HP----F----VAVLLSVTFVLAFGEIIPQAICSRYGLAVGANFVWLVRILMIICYPIAYPIGKILDAV---LGHHDALF 185 (517)
Q Consensus 117 ~~----~----ia~vl~t~lilvFGEiiPK~la~~~~~~ia~~~a~~v~~l~~l~~Plv~~i~~ll~~l---lG~~~~~~ 185 (517)
+. + ++++++|+++++|||++||++|.+||++++.+++|++++++++++|++|+++++.+++ +|.+...+
T Consensus 78 ~~~~~~~~~~~~~~~~~t~l~lvfgEiiPK~la~~~~~~ia~~~a~~l~~~~~l~~P~~~~l~~~~~~i~~~~g~~~~~~ 157 (408)
T TIGR03520 78 GSFNTELLRFLIEVVIVTFLILLFGEILPKVYANRNNLKFAKFMAYPINILDKVFSPISLPLRAITNFIHKKFGKQKSNI 157 (408)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 31 1 3445677889999999999999999999999999999999999999999999987764 56655568
Q ss_pred cHHHHHHHHHhhhhhcccCCCCChhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEe
Q 010123 186 RRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYS 265 (517)
Q Consensus 186 s~eEL~~lv~~~~~e~~~~G~L~~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~d 265 (517)
|++||+.+++.+ +++| ++++|+++++++++|++++|+|+||||.++++++.+++++ ++++.+.+++|||+|||+
T Consensus 158 t~eEl~~lv~~~----~~~g-~~~~E~~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~-e~~~~~~~~~~sR~PV~~ 231 (408)
T TIGR03520 158 SVDQLSQALELT----DEED-TTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFS-EIIPKIIENGYSRIPVYK 231 (408)
T ss_pred CHHHHHHHHHhH----hhcC-CChHHHHHHHHHhccCCCEeeeeCCchHhEEEEECCCCHH-HHHHHHHhCCCCEEEEEc
Confidence 999999999843 3445 6899999999999999999999999999999999999999 999999999999999999
Q ss_pred CCCCCEEEEEEhhhHhcccccCCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEeeCCCCcccc
Q 010123 266 GNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKKSQ 336 (517)
Q Consensus 266 dd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDEyG~~~G~~ 336 (517)
++.|+++|+|+.||++....++..+++++ ++++.+||+++++.++++.|++++.|+++|+||||++.|++
T Consensus 232 ~~~d~ivGiv~~kDll~~~~~~~~~l~~~-~~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiV 301 (408)
T TIGR03520 232 ETIDNITGVLYIKDLLPHLNKKNFDWQSL-LREPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLV 301 (408)
T ss_pred CCCCceEEEEEHHHHHhHhccCCCCHHHH-cCCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEE
Confidence 87889999999999986544334457787 57889999999999999999999999999999887776665
No 2
>PRK11573 hypothetical protein; Provisional
Probab=100.00 E-value=3.7e-56 Score=472.80 Aligned_cols=332 Identities=19% Similarity=0.324 Sum_probs=279.8
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHH-
Q 010123 44 VLFAGIMSGLTLGLMSLGLVELEILQRSGTSTEKQQAAAILPVVQKQHQLLVTLLLCNACAMEALPIYL----DKIFHP- 118 (517)
Q Consensus 44 illsafFSg~E~Al~Sl~~~rL~~la~~g~~~~kk~A~~il~l~~~~~~lL~TlLlgn~la~~~l~~~l----~~l~~~- 118 (517)
+++||||||+|+|++|+++.+|+.++++|++ +|++++++++||+++|+|+++||++++.+.+.+. ..+++.
T Consensus 2 i~lsafFs~~E~Al~s~~~~~l~~l~~~g~~----~a~~l~~l~~~~~~~Lstiligntl~~i~~~~l~~~~~~~~~~~~ 77 (413)
T PRK11573 2 VVISAYFSGSETGMMTLNRYRLRHMAKQGNR----SAKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDA 77 (413)
T ss_pred eehhhHHHHHHHHHHHcCHHHHHHHHHcCCh----hHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4689999999999999999999999999974 6788999999999999999999999987665433 233332
Q ss_pred --HHHHHHHHHHHHHHhhhchhhHHHHhhhHHHhhHHHHHHHHHHHhhhhHHHHHHHHHH---HhCCCC-----ccccHH
Q 010123 119 --FVAVLLSVTFVLAFGEIIPQAICSRYGLAVGANFVWLVRILMIICYPIAYPIGKILDA---VLGHHD-----ALFRRA 188 (517)
Q Consensus 119 --~ia~vl~t~lilvFGEiiPK~la~~~~~~ia~~~a~~v~~l~~l~~Plv~~i~~ll~~---llG~~~-----~~~s~e 188 (517)
+++++++|+++++|||++||++|.+||++++.++++++++++++++|++|+++++.+. ++|.+. ..+|++
T Consensus 78 ~~~ia~~i~t~l~lvfGEiiPK~la~~~~~~~a~~~a~~l~~~~~l~~P~v~~l~~~~~~l~~l~g~~~~~~~~~~~s~e 157 (413)
T PRK11573 78 GVAIATGVLTFVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNTITRLLMRLMGIKTDIVVSGALSKE 157 (413)
T ss_pred HHHHHHHHHHHHHHhhhhHhHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCCCHH
Confidence 3556678899999999999999999999999999999999999999999999887765 456542 368999
Q ss_pred HHHHHHHhhhhhcccCCCCChhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCC
Q 010123 189 QLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNP 268 (517)
Q Consensus 189 EL~~lv~~~~~e~~~~G~L~~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~ 268 (517)
||+.+++.+ . +.++++|+++++++++|++++|+|+||||+++++++.+++++ ++++.+.+++|||+|||+++.
T Consensus 158 El~~lv~~~----~--~~l~~~e~~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~-e~~~~~~~~~~SR~PVy~~~~ 230 (413)
T PRK11573 158 ELRTIVHES----R--SQISRRNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWK-SILRQLTHSPHGRIVLYRDSL 230 (413)
T ss_pred HHHHHHHHH----h--hhcCHHHHHHHHHHhccCCCChhhcCCccceEEEEECCCCHH-HHHHHHHhCCCceEEEEcCCC
Confidence 999999842 2 259999999999999999999999999999999999999999 999999999999999999888
Q ss_pred CCEEEEEEhhhHhcccccC-C---cccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEeeCCCCcccccccccccc
Q 010123 269 KNIIGLLLVKSLLTVRAET-E---TPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKKSQSISLGEKF 344 (517)
Q Consensus 269 d~iVGiV~~kDLl~~~~~~-~---~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDEyG~~~G~~~~~~~~~~ 344 (517)
|+++|+||.||++....++ + ..+.++ +|++.+||+++++.++|+.|++++.|+|+|+||||++.|++
T Consensus 231 D~IiGiv~~kDll~~~~~~~~~~~~~l~~~-~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiV-------- 301 (413)
T PRK11573 231 DDAISMLRVREAYRLMTEKKEFTKENMLRA-ADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLV-------- 301 (413)
T ss_pred CceEEEEEHHHHHHHhhccCcCCHHHHHhh-ccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEe--------
Confidence 9999999999998643221 1 123344 68999999999999999999999999999999999999988
Q ss_pred CCCCcccCCCCCccccccCCCCCCCCCCCCCCccccccccccccCCCCCCCCCCCCcccccccCCCCCCcccCCCC--EE
Q 010123 345 GGNGVFSGNSQLTTPLLTNDVTSETTPLLTNDVTSESVVVGIDRTSRPNTNNQSLPPQLGAAAENLPYSLEDIEEG--VV 422 (517)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~--~v 422 (517)
|.+|..|+++|+|.++++... ... +.. ..+| .+
T Consensus 302 -----------------------------TleDilEeivGei~de~d~~~--~~~----------i~~----~~~~~~~v 336 (413)
T PRK11573 302 -----------------------------TVEDILEEIVGDFTTSMSPTL--AEE----------VTP----QNDGSVII 336 (413)
T ss_pred -----------------------------eHHHHHHHHhCCCCcccCccc--ccc----------eEE----ecCCEEEE
Confidence 889999999999988764210 000 001 1234 46
Q ss_pred EEEEehHHHHHHHhcCccc
Q 010123 423 IGIITLEDVFEELLQEEIV 441 (517)
Q Consensus 423 iGIITleDV~eeLl~eei~ 441 (517)
-|-.+++|+-+.| +-++.
T Consensus 337 ~G~~~l~d~~~~l-~~~l~ 354 (413)
T PRK11573 337 DGTANVREINKAF-NWHLP 354 (413)
T ss_pred EeeeEHHHHHHHh-CCCCC
Confidence 7999999998887 44553
No 3
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-56 Score=451.77 Aligned_cols=286 Identities=24% Similarity=0.405 Sum_probs=253.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH----
Q 010123 36 YAGVSCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTSTEKQQAAAILPVVQKQHQLLVTLLLCNACAMEALPIY---- 111 (517)
Q Consensus 36 ~~~ii~~LillsafFSg~E~Al~Sl~~~rL~~la~~g~~~~kk~A~~il~l~~~~~~lL~TlLlgn~la~~~l~~~---- 111 (517)
.++++++|+++||||||+|+|+++++|.|+++++++|+ |+|+++.+++++|+++++|+|+||+++|.+.+.+
T Consensus 5 l~~~iiili~iSAfFSgSETal~a~nr~Rlr~la~~G~----~~Akrv~kLL~k~drlig~iLIGNNLvNilasalaT~~ 80 (423)
T COG4536 5 LIIAIIILIIISAFFSGSETALTALNRYRLRHLAKQGN----RGAKRVEKLLEKPDRLIGTILIGNNLVNILASALATIL 80 (423)
T ss_pred HHHHHHHHHHHHHHhcccHHHHhhccHHHHHHHHHccc----hhhHHHHHHhcCchheeeeeeecccHHHHHHHHHHHHH
Confidence 34667778999999999999999999999999999999 4689999999999999999999999999876544
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHhhhchhhHHHHhhhHHHhhHHHHHHHHHHHhhhhHHHHHHHHHH---HhCCCC---
Q 010123 112 LDKIFHP---FVAVLLSVTFVLAFGEIIPQAICSRYGLAVGANFVWLVRILMIICYPIAYPIGKILDA---VLGHHD--- 182 (517)
Q Consensus 112 l~~l~~~---~ia~vl~t~lilvFGEiiPK~la~~~~~~ia~~~a~~v~~l~~l~~Plv~~i~~ll~~---llG~~~--- 182 (517)
+-.+||. .+|+.++|+++++|+|++||++|..||++++..+++++.++.++|+|++|+++++.+. +||.+.
T Consensus 81 ~irl~Gd~GvaIAt~~mT~vilvFaEVlPKt~Aa~~perva~~~s~~l~~l~~l~~Plv~lln~it~~llrl~gi~~~~~ 160 (423)
T COG4536 81 GIRLYGDAGVAIATGVLTFVILVFAEVLPKTIAALYPERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGINLDQA 160 (423)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHhcchHHhhhChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccc
Confidence 3345554 3677788999999999999999999999999999999999999999999999988775 467652
Q ss_pred --ccccHHHHHHHHHhhhhhcccCCCCChhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcCCcE
Q 010123 183 --ALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSR 260 (517)
Q Consensus 183 --~~~s~eEL~~lv~~~~~e~~~~G~L~~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr 260 (517)
...++||||.+++ +++..|...+++++|+.++++|+++||.|||+||.++..++.|++.+ ++++.+..+.|+|
T Consensus 161 ~~~~~s~EElR~~v~----~~~~e~~~~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e-~iv~ql~~s~HtR 235 (423)
T COG4536 161 VSQLSSKEELRTAVN----ESGSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWE-EIVRQLLHSPHTR 235 (423)
T ss_pred cccccCHHHHHHHHH----HhhcccccccccHHHHhcccccccceeeeeeccccceeeecCCCCHH-HHHHHHhhCCCCc
Confidence 4689999999998 44556777788999999999999999999999999999999999999 9999999999999
Q ss_pred EEEEeCCCCCEEEEEEhhhHhcccccCC-ccccccc--ccCCcccCCCCCHHHHHHHHHhCCCcEEEEEeeCC
Q 010123 261 VPIYSGNPKNIIGLLLVKSLLTVRAETE-TPVSAVS--IRRMPRVPADMPLYDILNEFQKGSSHMAAVVKVKG 330 (517)
Q Consensus 261 ~PV~ddd~d~iVGiV~~kDLl~~~~~~~-~~V~dim--~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDEyG 330 (517)
+|||.++.|+++|++|.||+++...+.+ ..-.+++ .+++.|||+.+++.+.|..|++++.|++.||||||
T Consensus 236 iplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG 308 (423)
T COG4536 236 IPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYG 308 (423)
T ss_pred eeeecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccC
Confidence 9999999999999999999998876654 2222332 47899999999999999999999999999999764
No 4
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=100.00 E-value=3.3e-52 Score=445.12 Aligned_cols=309 Identities=28% Similarity=0.431 Sum_probs=267.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-
Q 010123 36 YAGVSCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTSTEKQQAAAILPVVQKQHQLLVTLLLCNACAMEALPIYLDK- 114 (517)
Q Consensus 36 ~~~ii~~LillsafFSg~E~Al~Sl~~~rL~~la~~g~~~~kk~A~~il~l~~~~~~lL~TlLlgn~la~~~l~~~l~~- 114 (517)
.++++++|+++|||||++|+|++|+++.|+++++++|+ ++|..++++.++++.+++++++|+++++.+.+.+...
T Consensus 6 ~~~~i~~li~l~~ff~a~E~A~~s~~~~rl~~~~~~g~----~~a~~~~~~~~~~~~~ls~~qigitl~~i~~g~~~~~~ 81 (429)
T COG1253 6 TLLLILLLIALSAFFSAAEFALVSLRRSRLEQLAEEGN----KRAKAALKLIERLNRYLSTVQLGITLVSLLLGAVGEPA 81 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHccC----HhHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677889999999999999999999999999999987 4688899999999999999999999887765543322
Q ss_pred ---HHHHHH-----H----HHHHHHHHHHHhhhchhhHHHHhhhHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHh---C
Q 010123 115 ---IFHPFV-----A----VLLSVTFVLAFGEIIPQAICSRYGLAVGANFVWLVRILMIICYPIAYPIGKILDAVL---G 179 (517)
Q Consensus 115 ---l~~~~i-----a----~vl~t~lilvFGEiiPK~la~~~~~~ia~~~a~~v~~l~~l~~Plv~~i~~ll~~ll---G 179 (517)
++.++. + ++++|+++++|||++||++|.+||++++++.++++++++++++|++|++++++++++ |
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~~~t~l~~i~gEl~PK~~a~~~~e~va~~~a~~~~~~~~l~~P~i~~~~~~a~~il~l~~ 161 (429)
T COG1253 82 LAALLEPLLEALGLSAALSFAIITFLHVVFGELVPKSIAIRNPEKVALLIAPPLRFFYRLLYPLIWLLNRIANAILRLFG 161 (429)
T ss_pred HHHHHHHHhhhccchhHHHHHHHHhhhheeechhhhHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 222221 1 457788999999999999999999999999999999999999999999999888754 4
Q ss_pred CC---C--ccccHHHHHHHHHhhhhhcccCCCCChhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHH
Q 010123 180 HH---D--ALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKIL 254 (517)
Q Consensus 180 ~~---~--~~~s~eEL~~lv~~~~~e~~~~G~L~~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~ 254 (517)
.+ + ...+.++++ +++ ++.+.|.++++|++|++++|+|++++|+++||||+++++++.+.+++ ++.+.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~-~~~----~~~~~g~~~~~E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~-~~~~~~~ 235 (429)
T COG1253 162 VEPVEEEALTSTEEELE-LVS----ESAEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELIELIL 235 (429)
T ss_pred CCCCCccccCccHHHHH-HHH----hHHhcCCcCHHHHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHH-HHHHHHH
Confidence 43 2 346677777 776 56678999999999999999999999999999999999999999998 9999999
Q ss_pred HcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCc-ccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEeeCCCCc
Q 010123 255 ARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETET-PVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSK 333 (517)
Q Consensus 255 ~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~-~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDEyG~~~ 333 (517)
+++|||+|||+++.|+++|++|.||++....+++. .....-.+++++||+++++.++|++|++.+.|||+|+||||++.
T Consensus 236 ~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~~~~~~~~~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~ 315 (429)
T COG1253 236 ESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQSDLDLRVLVRPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVE 315 (429)
T ss_pred hCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCccccchhhcccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeE
Confidence 99999999999888999999999999987665432 22222356999999999999999999999999999999999988
Q ss_pred cccccccccccCCCCcccCCCCCccccccCCCCCCCCCCCCCCccccccccccccCCC
Q 010123 334 KSQSISLGEKFGGNGVFSGNSQLTTPLLTNDVTSETTPLLTNDVTSESVVVGIDRTSR 391 (517)
Q Consensus 334 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (517)
|++ |.+|..|+++|+|.++++
T Consensus 316 GlV-------------------------------------TleDIiEeIvGei~de~d 336 (429)
T COG1253 316 GLV-------------------------------------TLEDIIEEIVGEIPDEHD 336 (429)
T ss_pred EEe-------------------------------------EHHHHHHHHhCCCcCccc
Confidence 887 778888888888887775
No 5
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=100.00 E-value=2.1e-40 Score=357.88 Aligned_cols=420 Identities=44% Similarity=0.599 Sum_probs=339.7
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchHHH-HHHHHHHHHHhhhHHHHHHHHHHH
Q 010123 24 DDIEFGNPWWFVYAGVSCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTSTEKQ-QAAAILPVVQKQHQLLVTLLLCNA 102 (517)
Q Consensus 24 ~~~~~~~~~~~~~~~ii~~LillsafFSg~E~Al~Sl~~~rL~~la~~g~~~~kk-~A~~il~l~~~~~~lL~TlLlgn~ 102 (517)
...|+...+|+++..++++|++++++|||.++++++++...++.+.+.|+..+++ .++++....++.+++|+|+++||.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~~~~~sgltlglm~~~~~~l~~l~~s~~~~~~~~~~a~i~~~~k~~~~lL~tlll~n~ 82 (498)
T KOG2118|consen 3 NAIPKTGSFMPVTFEIIIILVLLLGLMSGLTLGLMSLTEVELEVLRKSGEVNEKKLIAAAIFPVRKNLHDLLVTLLLCNS 82 (498)
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHhhhcchhheechhhhhHHHhccCCccchhhhhhhhcccccccceeeehheehhh
Confidence 4567777788888888888999999999999999999999999999999988776 788899999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHhhhHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhCCC
Q 010123 103 CAMEA-LPIYLDKIFHPFVAVLLSVTFVLAFGEIIPQAICSRYGLAVGANFVWLVRILMIICYPIAYPIGKILDAVLGHH 181 (517)
Q Consensus 103 la~~~-l~~~l~~l~~~~ia~vl~t~lilvFGEiiPK~la~~~~~~ia~~~a~~v~~l~~l~~Plv~~i~~ll~~llG~~ 181 (517)
+++.+ ++.++....++|.++.+++++++.||||+||++|.+|+..+++.+.|++++++++++||.||++++ ++.+|.+
T Consensus 83 ~~~e~~L~i~~~~~~~~~~a~~is~~~i~~~geIipq~vc~~~gl~vga~~~~~~~i~~~l~~PI~~p~~~~-d~~lg~~ 161 (498)
T KOG2118|consen 83 IATEAVLPFFLDAESGESGALRISVTEILIFGEIIPQSVCVKYGLAVGANLVPLVRILSFLCLPIAYPFSKL-DTALGLN 161 (498)
T ss_pred hccccccceeecccccccceEecceeeeeecccccchHHHhhhcccccccceehHHHHHHHhhhhheehhhh-hhhhccc
Confidence 99999 898888888889999999999999999999999999999999999999999999999999999999 8888887
Q ss_pred C-ccccHHHHHHHHHhhhhhcccCCCCChhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcCCcE
Q 010123 182 D-ALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSR 260 (517)
Q Consensus 182 ~-~~~s~eEL~~lv~~~~~e~~~~G~L~~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr 260 (517)
. ..+.+.+++.++..|+.|+++ |.+..+|..++.+++++.++.++++|||..+++.++.+..+.++.+..+.++||||
T Consensus 162 ~~~~~~~~~l~~lv~~~~~e~~~-g~~~~~e~~ii~g~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sr 240 (498)
T KOG2118|consen 162 LGEFLKRASLLALVQLVGNEAGK-GDLTYDELTIITGALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSR 240 (498)
T ss_pred cccchhhHHHHHHHHHHhccccc-CcccchhhhHhhhhHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcce
Confidence 6 567889999999999988877 99999999999999999999999999999999999999999988899999999999
Q ss_pred EEEEeCCCCCEEEEEEhhhHhccc----ccCCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEeeCCCCcccc
Q 010123 261 VPIYSGNPKNIIGLLLVKSLLTVR----AETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKKSQ 336 (517)
Q Consensus 261 ~PV~ddd~d~iVGiV~~kDLl~~~----~~~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDEyG~~~G~~ 336 (517)
+|||+.+..+.+|.+..+.++... .....++.+.+.++++.+|+++++.+.++.|++.+.|++.|.. +....+++
T Consensus 241 ipv~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~-~~~~~~~~ 319 (498)
T KOG2118|consen 241 IPVYEQEPKNKIGGLLVMNLLRLLQVEVPLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN-GHVDIFVL 319 (498)
T ss_pred eeeccCcccchhhHHHHhhhhhhhccccccccccchhhhccccccCCCcccHHHHHHHHhhhhceeEEEec-CCcceeeE
Confidence 999998777888887777777665 4446788888899999999999999999999999999999987 44445544
Q ss_pred ccccc-----cccCCCCcccCCCCCccccccCCCCCCCCCCCCCCccccc-cccccccCCCC----CCCCCCCCcccccc
Q 010123 337 SISLG-----EKFGGNGVFSGNSQLTTPLLTNDVTSETTPLLTNDVTSES-VVVGIDRTSRP----NTNNQSLPPQLGAA 406 (517)
Q Consensus 337 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~ 406 (517)
.-.+- +...+.... +.++++.++...+. ..... .+.+|++.+-. +....+..+.++..
T Consensus 320 ~l~~~~~~~~ev~de~d~~-~~~~~~~~~~~~~~-----------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (498)
T KOG2118|consen 320 TLEDLEEVVKEVEDEEDKE-EIKFETGIFTLRGI-----------GDLDAGAVTDIDQLGERSPIKERSPRSSESLLDSR 387 (498)
T ss_pred eccchhhhcceeccccccc-cchhcccchhhccc-----------ccccccccchhhhhcccccccccCCCCCccccccc
Confidence 32221 222222222 44555555444431 11111 34444444211 11122222222222
Q ss_pred cCCCCCCcccCCC-CEEEEEEehHHHHHHHhcCccccccchhhhhhhhHhHHHHHH
Q 010123 407 AENLPYSLEDIEE-GVVIGIITLEDVFEELLQEEIVDETDVYVDVHKRIRVAAAAA 461 (517)
Q Consensus 407 ~~~~~~~~~~~ed-~~viGIITleDV~eeLl~eei~detd~~~d~~~~~~v~~~~~ 461 (517)
... .++-.+. ....|++|++|+++++++++|.++++.+...+++.|++..++
T Consensus 388 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~ 440 (498)
T KOG2118|consen 388 KSA---FEDLAELGEIGHSVLTLESVIEPDESERILSDLQLVKITRQQYRNALLAS 440 (498)
T ss_pred ccc---ccccccccccCccceehhhhhccccchhhhccccceechhhhhhhHhhhh
Confidence 111 1111122 335788999999999999999999999999999999997764
No 6
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.96 E-value=4.6e-28 Score=247.04 Aligned_cols=155 Identities=25% Similarity=0.417 Sum_probs=133.2
Q ss_pred HHHHhCCCCccccHHHHHHHHHhhhhhcccCCCCChhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHH
Q 010123 174 LDAVLGHHDALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKI 253 (517)
Q Consensus 174 l~~llG~~~~~~s~eEL~~lv~~~~~e~~~~G~L~~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l 253 (517)
+..++|.+. .|++||+.+++ ++.+.|.|+++|+++++++|+|.+++|+++|+||.++++++.++++. ++++.+
T Consensus 23 ~~~~~~~~~--~t~eEl~~l~~----~~~~~g~l~~~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~-e~~~~i 95 (292)
T PRK15094 23 LSQLFHGEP--KNRDELLALIR----DSEQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECLDVI 95 (292)
T ss_pred HHHHcCCCC--CCHHHHHHHHH----hHhhcCCCCHHHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHH-HHHHHH
Confidence 344566553 58999999998 45567999999999999999999999999999999999999999999 999999
Q ss_pred HHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc--CCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEeeCCC
Q 010123 254 LARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE--TETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVKVKGK 331 (517)
Q Consensus 254 ~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~--~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDEyG~ 331 (517)
.+++|+|+|||+++.++++|+|+.||++..... ....+.++| +++++|++++++.++++.|++++.|++||+||||+
T Consensus 96 ~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~l~~l~-r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~ 174 (292)
T PRK15094 96 IESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVL-RQAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGG 174 (292)
T ss_pred HhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCCcCCHHHHc-CCCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCC
Confidence 999999999998766899999999999864332 123477875 77789999999999999999999999999997665
Q ss_pred Ccccc
Q 010123 332 SKKSQ 336 (517)
Q Consensus 332 ~~G~~ 336 (517)
+.|++
T Consensus 175 viGiV 179 (292)
T PRK15094 175 VSGLV 179 (292)
T ss_pred EEEEe
Confidence 55544
No 7
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=99.95 E-value=4.5e-26 Score=215.46 Aligned_cols=167 Identities=28% Similarity=0.480 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH---
Q 010123 37 AGVSCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTSTEKQQAAAILPVVQKQHQLLVTLLLCNACAMEALPIYLD--- 113 (517)
Q Consensus 37 ~~ii~~LillsafFSg~E~Al~Sl~~~rL~~la~~g~~~~kk~A~~il~l~~~~~~lL~TlLlgn~la~~~l~~~l~--- 113 (517)
+++++++++++|||||+|+|++++++.+++.++++|+ ++++++.++++||++++.|++++|++++.+.+.+..
T Consensus 3 l~~~~~ll~~~~~fs~~e~Al~~l~~~~l~~~~~~~~----~~a~~~~~l~~~~~~~l~t~~~~~~~~~~~~~~l~~~~~ 78 (183)
T PF01595_consen 3 LLLALLLLLLSAFFSAAETALFSLSRSRLEELAEEGD----KRARRLLKLLERPERLLSTILLGNTLSNVLAGVLATVLA 78 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCC----HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667778899999999999999999999999999987 467889999999999999999999998877664433
Q ss_pred -HHHH----HHHHHHHHHHHHHHHhhhchhhHHHHhhhHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHh---CCC---C
Q 010123 114 -KIFH----PFVAVLLSVTFVLAFGEIIPQAICSRYGLAVGANFVWLVRILMIICYPIAYPIGKILDAVL---GHH---D 182 (517)
Q Consensus 114 -~l~~----~~ia~vl~t~lilvFGEiiPK~la~~~~~~ia~~~a~~v~~l~~l~~Plv~~i~~ll~~ll---G~~---~ 182 (517)
.+++ .+++++++++++++|||++||++|.+||++++.+.++++++++++++|++|++.++.++++ |.+ .
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~lif~e~lPk~l~~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~~~~~~~~~~~~~~~ 158 (183)
T PF01595_consen 79 SNLFGPWWALLIAFLIITLLILIFGEILPKALARRHPEKIALRLAPLLRVLMILLYPLVWLLSFISNKILKLFGIENEED 158 (183)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 2333 2455667788899999999999999999999999999999999999999999999888654 443 2
Q ss_pred ccccHHHHHHHHHhhhhhcccCCCCChhH
Q 010123 183 ALFRRAQLKALVSIHSQEAGKGGELTHDE 211 (517)
Q Consensus 183 ~~~s~eEL~~lv~~~~~e~~~~G~L~~eE 211 (517)
+.+++|||+++++ +++++|.++++|
T Consensus 159 ~~~s~eel~~lv~----~~~e~G~i~~~E 183 (183)
T PF01595_consen 159 PAVSEEELRSLVE----EGEEEGVIEEEE 183 (183)
T ss_pred CCCCHHHHHHHHH----hHHHCCCCCCCC
Confidence 5789999999999 556789999876
No 8
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=99.92 E-value=3.2e-25 Score=213.59 Aligned_cols=213 Identities=22% Similarity=0.318 Sum_probs=176.1
Q ss_pred cccHHHHHHHHHhhhhhcccCCCCChhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEE
Q 010123 184 LFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPI 263 (517)
Q Consensus 184 ~~s~eEL~~lv~~~~~e~~~~G~L~~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV 263 (517)
+-+++||..++. .+++.+.|+.+-..|+.+++++.+.+|+|||.||++++++..+.+++ +++..+.++.||||||
T Consensus 31 pknr~eLl~liR----dse~n~LiD~dt~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~-~~l~~iiesaHSRfPV 105 (293)
T COG4535 31 PKNREELLELIR----DSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPV 105 (293)
T ss_pred CcCHHHHHHHHH----HhhhccccChhHHHHHHHHHHHHHhhHhhhcccHHHheeccccCCHH-HHHHHHHHhccccCCc
Confidence 457899999997 45678899999999999999999999999999999999999999999 9999999999999999
Q ss_pred EeCCCCCEEEEEEhhhHhcccccC--CcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEeeCCCCccccccccc
Q 010123 264 YSGNPKNIIGLLLVKSLLTVRAET--ETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKKSQSISLG 341 (517)
Q Consensus 264 ~ddd~d~iVGiV~~kDLl~~~~~~--~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDEyG~~~G~~~~~~~ 341 (517)
+.++.|++.|+++.|||+.....+ ...++++ .||..+||++..+..+|+.|+.++.|||+|||||||++|+|
T Consensus 106 i~edkD~v~GIL~AKDLL~~~~~~~~~F~i~~l-LRPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLV----- 179 (293)
T COG4535 106 ISEDKDHVEGILLAKDLLPFMRSDAEPFDIKEL-LRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLV----- 179 (293)
T ss_pred ccCCchhhhhhhhHHHHHHHhcCCcccccHHHh-cccceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeE-----
Confidence 999889999999999999865443 3567775 89999999999999999999999999999999999999998
Q ss_pred cccCCCCcccCCCCCccccccCCCCCCCCCCCCCCccccccccccccCCCCCCCCCCCCcccccccCCCCCCcccCCCCE
Q 010123 342 EKFGGNGVFSGNSQLTTPLLTNDVTSETTPLLTNDVTSESVVVGIDRTSRPNTNNQSLPPQLGAAAENLPYSLEDIEEGV 421 (517)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~ 421 (517)
|.++..|..|||||++++..- ..++-.++ .....
T Consensus 180 --------------------------------TIEDiLEqIVGdIEDE~Deee------------~~dI~~ls--~~~~~ 213 (293)
T COG4535 180 --------------------------------TIEDILEQIVGDIEDEYDEEE------------DADIRQLS--RHTWR 213 (293)
T ss_pred --------------------------------EHHHHHHHHhcccccccchhh------------hhhhHhhc--CCceE
Confidence 779999999999999987410 00111111 03556
Q ss_pred EEEEEehHHHHHHHhcCccccccchhhhhhhhHhHH
Q 010123 422 VIGIITLEDVFEELLQEEIVDETDVYVDVHKRIRVA 457 (517)
Q Consensus 422 viGIITleDV~eeLl~eei~detd~~~d~~~~~~v~ 457 (517)
|-+.-..||.=|. .+.+.- |+.+|....+-..
T Consensus 214 VrALT~IedFNe~-F~t~Fs---DeevDTIGGLVm~ 245 (293)
T COG4535 214 VRALTEIEDFNEA-FGTHFS---DEEVDTIGGLVMQ 245 (293)
T ss_pred EEecccHHHHHHH-hcCCCC---hhhhhhhhHHHHH
Confidence 7777777776544 454554 5566665555433
No 9
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.70 E-value=7.5e-16 Score=153.26 Aligned_cols=136 Identities=15% Similarity=0.289 Sum_probs=117.1
Q ss_pred cccHHHHHHHHHhhhhhcccCCCCChhHHHHHHHhhc-------ccccccccccccccceEEecCCCChhHHHHHHHHHc
Q 010123 184 LFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALD-------LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILAR 256 (517)
Q Consensus 184 ~~s~eEL~~lv~~~~~e~~~~G~L~~eE~~iI~~vl~-------L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~ 256 (517)
.|+.+||.+.++ +-+|.-+|+.+|-+.+.+-.+ +.+.++.|||++ +|++++.+++++ ++.+.+.++
T Consensus 202 gfs~~Dld~aL~----~~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSr--dVvtv~~~ts~d-hA~~ll~~H 274 (382)
T COG3448 202 GFSSEDLDAALQ----RLGETLDIDRDDLERLLRETELQALRRRMGELTCADIMSR--DVVTVSTDTSID-HARKLLQEH 274 (382)
T ss_pred CCCHHHHHHHHH----hcCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCc--cceecCCcCChH-HHHHHHHHc
Confidence 488999999887 445567788887666554444 478899999995 999999999999 999999999
Q ss_pred CCcEEEEEeCCCCCEEEEEEhhhHhccccc---------CCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 257 GHSRVPIYSGNPKNIIGLLLVKSLLTVRAE---------TETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 257 g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~---------~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
++..+||.|++ .+++|+|+.+|++..... ...+++.+|..++.+|.++++..+++..|...+.|.+||+|
T Consensus 275 ~ikaLPV~d~~-~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld 353 (382)
T COG3448 275 RIKALPVLDEH-RRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLD 353 (382)
T ss_pred Ccccccccccc-cceeeeeeHHHHhhccCcchHHHhhccCCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEc
Confidence 99999999875 899999999999873211 25679999999999999999999999999999999999999
No 10
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.69 E-value=2.5e-16 Score=169.87 Aligned_cols=134 Identities=16% Similarity=0.152 Sum_probs=113.9
Q ss_pred cccHHHHHHHHHhhhhhcccC------CCCChhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHH--
Q 010123 184 LFRRAQLKALVSIHSQEAGKG------GELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILA-- 255 (517)
Q Consensus 184 ~~s~eEL~~lv~~~~~e~~~~------G~L~~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~-- 255 (517)
.++.+|+..+++. ..+. +.++++|++.++++++|++.+|+++|++ ++++++.++++. ++++.+++
T Consensus 89 ~l~~dd~~~ll~~----l~~~~~~~lL~~l~~~er~~i~~ll~~~e~tvg~iMt~--~~~~v~~~~tv~-eal~~l~~~~ 161 (449)
T TIGR00400 89 EMNLDDVIDLLEE----VPANVVQQLLASSTEEERKAINLLLSYSDDSAGRIMTI--EYVELKEDYTVG-KALDYIRRVA 161 (449)
T ss_pred cCChhHHHHHHHh----CCHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHhCcC--ceEEECCCCcHH-HHHHHHHhcC
Confidence 5788999999973 3333 4799999999999999999999999994 899999999999 99999975
Q ss_pred -cCC--cEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 256 -RGH--SRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 256 -~g~--Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
..+ ..+||++++ ++++|+|+.+|++... .+.+++++|.++++++++++++.++++.|++++.+.+||||
T Consensus 162 ~~~~~~~~v~Vvd~~-~~l~GvV~l~dLl~a~--~~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD 233 (449)
T TIGR00400 162 KTKEDIYTLYVTNES-KHLKGVLSIRDLILAK--PEEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVD 233 (449)
T ss_pred CCccceeEEEEECCC-CeEEEEEEHHHHhcCC--CCCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEc
Confidence 233 445555544 8899999999998653 35689999888888999999999999999999999999999
No 11
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.62 E-value=5.7e-15 Score=159.39 Aligned_cols=141 Identities=13% Similarity=0.259 Sum_probs=118.8
Q ss_pred ccccHHHHHHHHHhhhhhcccCCCCCh-----hHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcC
Q 010123 183 ALFRRAQLKALVSIHSQEAGKGGELTH-----DETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARG 257 (517)
Q Consensus 183 ~~~s~eEL~~lv~~~~~e~~~~G~L~~-----eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g 257 (517)
..+|++|+..++.. .+..|.|.+ +|++++++++++.+ +|.+ ++++++++.++. ++++.|.+++
T Consensus 43 dtvTe~ema~~ma~----~gg~GvI~~n~~~e~q~~~V~~Vk~~~~-----~~~~--~~vtl~~~~tv~-eal~~m~~~~ 110 (450)
T TIGR01302 43 DTVTESRMAIAMAR----EGGIGVIHRNMSIEEQAEQVKRVKRAEN-----GIIS--DPVTISPETTVA-DVLELMERKG 110 (450)
T ss_pred CccCHHHHHHHHHh----cCCCceeecCCCHHHHHHHHhhhccccC-----ceec--CceEeCCCCCHH-HHHHHHHHcC
Confidence 46899999999874 334688885 89999999997765 4653 778999999999 9999999999
Q ss_pred CcEEEEEeCCC--CCEEEEEEhhhHhcccccCCcccccccc-cCCcccCCCCCHHHHHHHHHhCCCcEEEEEeeCCCCcc
Q 010123 258 HSRVPIYSGNP--KNIIGLLLVKSLLTVRAETETPVSAVSI-RRMPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKK 334 (517)
Q Consensus 258 ~Sr~PV~ddd~--d~iVGiV~~kDLl~~~~~~~~~V~dim~-r~v~~V~~~~~l~daL~~m~~~~~~~apVVDEyG~~~G 334 (517)
++++||++++. ++++|+|+.+|++... ..+.+++++|. .+++++++++++.++++.|++++.+++||+|++|.+.|
T Consensus 111 ~s~lpVvd~~~~~~~lvGIVt~rDL~~~~-~~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvG 189 (450)
T TIGR01302 111 ISGIPVVEDGDMTGKLVGIITKRDIRFVK-DKGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVG 189 (450)
T ss_pred CCEEEEEeCCCCCCeEEEEEEHHHHhhhh-cCCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEE
Confidence 99999998753 6899999999998643 23568999987 48999999999999999999999999999996665555
Q ss_pred cc
Q 010123 335 SQ 336 (517)
Q Consensus 335 ~~ 336 (517)
++
T Consensus 190 iV 191 (450)
T TIGR01302 190 LI 191 (450)
T ss_pred EE
Confidence 55
No 12
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.60 E-value=2.8e-15 Score=146.94 Aligned_cols=108 Identities=17% Similarity=0.299 Sum_probs=99.6
Q ss_pred HHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC--Ccccc
Q 010123 215 ISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET--ETPVS 292 (517)
Q Consensus 215 I~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~--~~~V~ 292 (517)
+.++..+.+.+|+++|++ +++++.+|+|+. |+.+.+.++++...||+++ |+++|+++..|+..+..++ +..|+
T Consensus 163 i~~m~siPk~~V~~~~s~--~~i~v~~d~tl~-eaak~f~~~~i~GaPVvd~--dk~vGiit~~dI~~aia~g~~~~kV~ 237 (294)
T COG2524 163 ISKMVSIPKEKVKNLMSK--KLITVRPDDTLR-EAAKLFYEKGIRGAPVVDD--DKIVGIITLSDIAKAIANGNLDAKVS 237 (294)
T ss_pred EeeeeecCcchhhhhccC--CceEecCCccHH-HHHHHHHHcCccCCceecC--CceEEEEEHHHHHHHHHcCCccccHH
Confidence 456667789999999995 899999999999 9999999999999999986 5999999999999877664 57899
Q ss_pred cccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 293 AVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 293 dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
++|.++++++.+|+.++||++.|.+++..+++|+|
T Consensus 238 ~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~d 272 (294)
T COG2524 238 DYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTD 272 (294)
T ss_pred HHhccCCceEcCchhHHHHHHHHHhcCcceEEEEc
Confidence 99999999999999999999999999999999999
No 13
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.56 E-value=1.4e-14 Score=147.13 Aligned_cols=112 Identities=23% Similarity=0.346 Sum_probs=100.3
Q ss_pred HHHHHHhhc-----ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc
Q 010123 212 TTIISGALD-----LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE 286 (517)
Q Consensus 212 ~~iI~~vl~-----L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~ 286 (517)
..||.+++. =+=.+|.|||+|..+..++..+++++ +..++..+.||+||||++.. .+++|+|+.||+....+
T Consensus 171 AtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~-d~~~l~~kt~~sRfPVvn~~-~kvvGvVt~rDv~~~~~- 247 (432)
T COG4109 171 ATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVE-DWLDLVEKTGHSRFPVVNRS-MKVVGVVTMRDVLDKKP- 247 (432)
T ss_pred HHHHHHHHHHhhhhhheeeHHHhccccccceeccccccHH-HHHHHHHHcCCCccceeccc-ceEEEEEEehhhhcCCC-
Confidence 445555443 35578999999999999999999999 99999999999999999875 78999999999987644
Q ss_pred CCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 287 TETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 287 ~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
++++..+|.+.+.+|.+.+++..+.+.|-..+..|+||+|
T Consensus 248 -~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~ 287 (432)
T COG4109 248 -STTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVD 287 (432)
T ss_pred -CccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEc
Confidence 7889999999999999999999999999999999999999
No 14
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.47 E-value=7.3e-13 Score=144.43 Aligned_cols=140 Identities=19% Similarity=0.291 Sum_probs=119.0
Q ss_pred ccccHHHHHHHHHhhhhhcccCCCCC-----hhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcC
Q 010123 183 ALFRRAQLKALVSIHSQEAGKGGELT-----HDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARG 257 (517)
Q Consensus 183 ~~~s~eEL~~lv~~~~~e~~~~G~L~-----~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g 257 (517)
..+|++||...+. +.+.-|.|. +++.++++++.+ ++++|. .+++++++++++. ++++.|.+++
T Consensus 50 ~~vT~~ela~ava----~~GglG~i~~~~~~e~~~~~I~~vk~-----~~dim~--~~~v~i~~~~tv~-ea~~~m~~~~ 117 (486)
T PRK05567 50 DTVTEARMAIAMA----REGGIGVIHKNMSIEEQAEEVRKVKR-----SESGVV--TDPVTVTPDTTLA-EALALMARYG 117 (486)
T ss_pred CCcCHHHHHHHHH----hCCCCCEecCCCCHHHHHHHHHHhhh-----hhhccc--CCCeEeCCCCCHH-HHHHHHHHhC
Confidence 4679999999997 344556777 477888988865 557787 4788999999999 9999999999
Q ss_pred CcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccc-cCCcccCCCCCHHHHHHHHHhCCCcEEEEEeeCCCCcccc
Q 010123 258 HSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSI-RRMPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKKSQ 336 (517)
Q Consensus 258 ~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~-r~v~~V~~~~~l~daL~~m~~~~~~~apVVDEyG~~~G~~ 336 (517)
++++||++++ ++++|+|+.+|+.... +...++.++|. ++++++++++++.++++.|.+++.+.+||+|++|.+.|++
T Consensus 118 ~~~lpVvd~~-g~lvGiVt~~DL~~~~-~~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiI 195 (486)
T PRK05567 118 ISGVPVVDEN-GKLVGIITNRDVRFET-DLSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLI 195 (486)
T ss_pred CCEEEEEccC-CEEEEEEEHHHhhhcc-cCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEE
Confidence 9999999864 8999999999997543 33567999987 7889999999999999999999999999999888777777
No 15
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.45 E-value=1.1e-12 Score=113.23 Aligned_cols=91 Identities=26% Similarity=0.364 Sum_probs=80.1
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC--CcccccccccCCcccCCCCCHHHHH
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET--ETPVSAVSIRRMPRVPADMPLYDIL 312 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~--~~~V~dim~r~v~~V~~~~~l~daL 312 (517)
++.+++.+.++. ++++.|.+++++++||++++ ++++|+|+.+|+.....+. +.++.++|..+++++++++++.+++
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~al 79 (111)
T cd04603 2 QTVSVNCENPLR-EAIKMINELGARAVVVVDEE-NKVLGQVTLSDLLEIGPNDYETLKVCEVYIVPVPIVYCDSKVTDLL 79 (111)
T ss_pred ceEEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHhhccccccccChhheeecCCcEECCCCcHHHHH
Confidence 467889999999 99999999999999999865 8999999999998643321 3568899988899999999999999
Q ss_pred HHHHhCCCcEEEEEe
Q 010123 313 NEFQKGSSHMAAVVK 327 (517)
Q Consensus 313 ~~m~~~~~~~apVVD 327 (517)
+.|.+++.+.+||+|
T Consensus 80 ~~m~~~~~~~lpVvd 94 (111)
T cd04603 80 RIFRETEPPVVAVVD 94 (111)
T ss_pred HHHHHcCCCeEEEEc
Confidence 999999999999998
No 16
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.44 E-value=6.9e-13 Score=137.14 Aligned_cols=104 Identities=17% Similarity=0.118 Sum_probs=90.9
Q ss_pred cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc----CCccccccccc
Q 010123 222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE----TETPVSAVSIR 297 (517)
Q Consensus 222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~----~~~~V~dim~r 297 (517)
...+|+|+|++.+++.++++++++. ++++.|.++++..+||++++ ++++|+|+.+|+...... .+.++.++|.+
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~-~a~~~~~~~~~~~~vVvd~~-g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~ 277 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLR-DALLEITRKNLGMTVICDDN-MKIEGIFTDGDLRRVFDMGIDLRQASIADVMTP 277 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHhcCCCeEEEEcCC-CcEEEEEecHHHHHHHhcCCCcccCCHHHhcCC
Confidence 6778999999544889999999999 99999999888888888754 899999999998764332 24679999999
Q ss_pred CCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 298 RMPRVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 298 ~v~~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
+++++++++++.++++.|.+++.+.+||+|
T Consensus 278 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~ 307 (326)
T PRK10892 278 GGIRVRPGILAVDALNLMQSRHITSVLVAD 307 (326)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCcEEEEee
Confidence 999999999999999999999999999998
No 17
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.43 E-value=1.2e-12 Score=140.36 Aligned_cols=116 Identities=22% Similarity=0.257 Sum_probs=103.7
Q ss_pred CCChhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcC-----CcEEEEEeCCCCCEEEEEEhhhH
Q 010123 206 ELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARG-----HSRVPIYSGNPKNIIGLLLVKSL 280 (517)
Q Consensus 206 ~L~~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g-----~Sr~PV~ddd~d~iVGiV~~kDL 280 (517)
.+++++++.++..+.+.+.+|+.+|+ ++++++..+.|+. ++++++++.+ ...+.|+|.+ ++++|+|+.+++
T Consensus 114 ~l~~~~r~~v~~~l~y~e~taG~~Mt--~e~v~l~~~~Tv~-~al~~ir~~~~~~e~~~~lyVvD~~-~~L~Gvvsl~~L 189 (451)
T COG2239 114 LLDPEERARVRQLLSYPEDTAGRIMT--TEFVTLPEDVTVD-EALDRIRERAEDAETIYYLYVVDEK-GKLLGVVSLRDL 189 (451)
T ss_pred hCCHHHHHHHHHhcCCChhhhhccce--eeeEEeccCcCHH-HHHHHHHHhcccccccceEEEECCc-cceEEEeeHHHH
Confidence 47889999999999999999999999 5999999999999 9999998443 3445666654 789999999999
Q ss_pred hcccccCCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 281 LTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 281 l~~~~~~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
+...+ +..++++|.+.+++|+++++.+++.+.|++|+.-.+||||
T Consensus 190 l~a~~--~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd 234 (451)
T COG2239 190 LTAEP--DELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVD 234 (451)
T ss_pred hcCCc--HhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceEC
Confidence 97654 6789999999999999999999999999999999999999
No 18
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=1.9e-12 Score=110.59 Aligned_cols=91 Identities=15% Similarity=0.243 Sum_probs=79.9
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC-----CcccccccccCCcccCCCCCHH
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET-----ETPVSAVSIRRMPRVPADMPLY 309 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~-----~~~V~dim~r~v~~V~~~~~l~ 309 (517)
++++++++.++. ++++.+.+.+++++||++++ ++++|+++.+|++...... ..++.++|.++++++++++++.
T Consensus 2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 79 (113)
T cd04623 2 DVITVRPDATVA-EAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVD 79 (113)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHH
Confidence 467789999999 99999999999999999865 7999999999998643321 3478888888889999999999
Q ss_pred HHHHHHHhCCCcEEEEEe
Q 010123 310 DILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 310 daL~~m~~~~~~~apVVD 327 (517)
++++.|.+.+.+.+||+|
T Consensus 80 ~~l~~~~~~~~~~~~Vv~ 97 (113)
T cd04623 80 EAMALMTERRFRHLPVVD 97 (113)
T ss_pred HHHHHHHHcCCCEeEEEe
Confidence 999999999999999998
No 19
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.43 E-value=1.6e-12 Score=111.11 Aligned_cols=91 Identities=12% Similarity=0.258 Sum_probs=81.1
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCcccCCCCCHHHHHHH
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNE 314 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~daL~~ 314 (517)
++.++++++++. ++++.+.+++++++||++++ ++++|+++.+|++........++.++|.++++++++++++.++++.
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~ 80 (110)
T cd04605 3 PVVTISEDASIK-EAAKLMIEENINHLPVVDED-GRLVGIVTSWDISKAVARDKKSVEDIMTRNVITATPDEPIDVAARK 80 (110)
T ss_pred CCEEECCCCCHH-HHHHHHHhCCCceEEEECCC-CcEEEEEeHHHHHHHHhhCccCHHHhcCCCCeEECCCCcHHHHHHH
Confidence 567899999999 99999999999999999865 8999999999998654444456888888899999999999999999
Q ss_pred HHhCCCcEEEEEe
Q 010123 315 FQKGSSHMAAVVK 327 (517)
Q Consensus 315 m~~~~~~~apVVD 327 (517)
|.+++.+.+||+|
T Consensus 81 ~~~~~~~~~~Vv~ 93 (110)
T cd04605 81 MERHNISALPVVD 93 (110)
T ss_pred HHHhCCCEEeEEC
Confidence 9999999999998
No 20
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=1.6e-12 Score=111.43 Aligned_cols=91 Identities=13% Similarity=0.200 Sum_probs=80.2
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC---CcccccccccCCcccCCCCCHHHH
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET---ETPVSAVSIRRMPRVPADMPLYDI 311 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~---~~~V~dim~r~v~~V~~~~~l~da 311 (517)
++..++.+.++. ++++.+.+++++++||++++ ++++|+++.+|++...... +.++.++|.++++++++++++.++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 79 (111)
T cd04626 2 DFPTIDEDASIR-EALHEMLKYNTNEIIVKDNE-EKLKGVVTFTDILDLDLFESFLEKKVFNIVSQDVFYVNEEDTIDEA 79 (111)
T ss_pred CceEECCCccHH-HHHHHHHHhCCCeEEEEcCC-CCEEEEEehHHhHHHHhhcccccCcHHHHhcCCcEEEcCCCcHHHH
Confidence 467789999999 99999999999999999865 8999999999998654322 357888888889999999999999
Q ss_pred HHHHHhCCCcEEEEEe
Q 010123 312 LNEFQKGSSHMAAVVK 327 (517)
Q Consensus 312 L~~m~~~~~~~apVVD 327 (517)
+..|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~~~~Vv~ 95 (111)
T cd04626 80 LDIMREKQIGRLPVVD 95 (111)
T ss_pred HHHHHHcCCCeeeEeE
Confidence 9999999999999998
No 21
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=1.7e-12 Score=113.41 Aligned_cols=91 Identities=16% Similarity=0.217 Sum_probs=75.3
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCC-----ccccc------ccccCCcccC
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETE-----TPVSA------VSIRRMPRVP 303 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~-----~~V~d------im~r~v~~V~ 303 (517)
++.++++++++. ++++.|.+++++++||++++ ++++|+++.+|++....+.. .++.+ +|..++++++
T Consensus 2 ~~~~i~~~~~l~-~a~~~~~~~~~~~~pVv~~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 79 (120)
T cd04641 2 NIATARPDTPLI-DVLDMLVERRVSALPIVDEN-GKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCS 79 (120)
T ss_pred CcEEEcCCCCHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEc
Confidence 567899999999 99999999999999999764 89999999999986432211 12322 2335578899
Q ss_pred CCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 304 ADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 304 ~~~~l~daL~~m~~~~~~~apVVD 327 (517)
+++++.++++.|.+++.+.+||+|
T Consensus 80 ~~~~l~~~~~~m~~~~~~~l~Vvd 103 (120)
T cd04641 80 PDDCLRTIFDLIVKARVHRLVVVD 103 (120)
T ss_pred CCCcHHHHHHHHHhcCccEEEEEC
Confidence 999999999999999999999998
No 22
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.41 E-value=2.3e-12 Score=111.70 Aligned_cols=91 Identities=19% Similarity=0.211 Sum_probs=80.5
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc-----cCCcccccccccCCcccCCCCCHH
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA-----ETETPVSAVSIRRMPRVPADMPLY 309 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~-----~~~~~V~dim~r~v~~V~~~~~l~ 309 (517)
.+..+++++++. ++++.|.+.++..+||++++ ++++|+|+.+|++.... ..+.++.++|.++++++++++++.
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~-g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 79 (114)
T cd04619 2 RLAKIDVNATLQ-RAAKILGEPGIDLVVVCDPH-GKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLH 79 (114)
T ss_pred ceEEECCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHH
Confidence 366789999999 99999999999999999865 89999999999886432 124678899888999999999999
Q ss_pred HHHHHHHhCCCcEEEEEe
Q 010123 310 DILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 310 daL~~m~~~~~~~apVVD 327 (517)
++++.|.+++.+.+||+|
T Consensus 80 ~a~~~m~~~~~~~lpVvd 97 (114)
T cd04619 80 DVWQVMKQRGLKNIPVVD 97 (114)
T ss_pred HHHHHHHHcCCCeEEEEC
Confidence 999999999999999998
No 23
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.41 E-value=3.8e-12 Score=109.98 Aligned_cols=92 Identities=15% Similarity=0.220 Sum_probs=79.9
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc-----cCCcccccccccCCcccCCCCCHH
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA-----ETETPVSAVSIRRMPRVPADMPLY 309 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~-----~~~~~V~dim~r~v~~V~~~~~l~ 309 (517)
++.++++++++. ++++.|.+++++.+||++++.++++|+++.+|++.... ....++.++|.++++++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 80 (114)
T cd04630 2 NVVTIDGLATVA-EALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIK 80 (114)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHH
Confidence 577899999999 99999999999999999863378999999999986321 123578899888899999999999
Q ss_pred HHHHHHHhCCCcEEEEEe
Q 010123 310 DILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 310 daL~~m~~~~~~~apVVD 327 (517)
++++.|.+++.+.+||+|
T Consensus 81 ~~~~~~~~~~~~~~~Vvd 98 (114)
T cd04630 81 YCARLMERTNIRRAPVVE 98 (114)
T ss_pred HHHHHHHHcCCCEeeEee
Confidence 999999999999999998
No 24
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.40 E-value=2e-12 Score=118.83 Aligned_cols=118 Identities=18% Similarity=0.283 Sum_probs=93.0
Q ss_pred cCCCCChhHH---HHHHHhhcc--cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEh
Q 010123 203 KGGELTHDET---TIISGALDL--TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLV 277 (517)
Q Consensus 203 ~~G~L~~eE~---~iI~~vl~L--~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~ 277 (517)
|.|.+++.-. ++++.+.+- ...+++.+|+ .+++.+.+++++. ++++.|.++|+|.+||+++ |.++|-|+-
T Consensus 39 E~G~vdPrlSt~k~Il~aL~e~e~~~ita~~iM~--spvv~v~pdDsi~-~vv~lM~~~g~SQlPVi~~--~k~VGsItE 113 (187)
T COG3620 39 EAGKVDPRLSTVKRILEALEEAEKTRITAKTIMH--SPVVSVSPDDSIS-DVVNLMRDKGISQLPVIEE--DKVVGSITE 113 (187)
T ss_pred hcCCCCccHHHHHHHHHHHHHhhcceEeHhhhcc--CCeeEECchhhHH-HHHHHHHHcCCccCceeeC--CeeeeeecH
Confidence 4567776532 222222222 5578999999 5899999999999 9999999999999999986 789999999
Q ss_pred hhHhcccccC-----CcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 278 KSLLTVRAET-----ETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 278 kDLl~~~~~~-----~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
.|+.+...++ +.+++++|-.+.|+|++++++..+-+.+..+. .+.|++
T Consensus 114 ~~iv~~~le~~e~i~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~~--AVlV~e 166 (187)
T COG3620 114 NDIVRALLEGMESIRSLRVREVMGEPFPTVSPDESLNVISQLLEEHP--AVLVVE 166 (187)
T ss_pred HHHHHHHhccccchhhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhCC--eEEEEe
Confidence 9998765433 46789999999999999999988888776663 555665
No 25
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.39 E-value=3.4e-12 Score=109.23 Aligned_cols=90 Identities=18% Similarity=0.225 Sum_probs=80.6
Q ss_pred cceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCcccCCCCCHHHHHH
Q 010123 234 ESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILN 313 (517)
Q Consensus 234 ~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~daL~ 313 (517)
.++.++++++++. ++.+.+.+++++.+||++++ ++++|+|+.+|++... .+.++.++|..+++++++++++.++++
T Consensus 2 ~~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~--~~~~v~~~~~~~~~~v~~~~~l~~~~~ 77 (108)
T cd04596 2 EDTGYLTTTDTVK-DWHELNKETGHSRFPVVDEK-NKVVGIVTSKDVAGKD--PDTTIEKVMTKNPITVNPKTSVASVAH 77 (108)
T ss_pred CccEEeCCCCCHH-HHHHHHHHcCCCceeEECCC-CeEEEEecHHHHhccc--ccccHHHHhcCCCeEECCCCCHHHHHH
Confidence 3678899999999 99999999999999999864 8999999999998643 245789998888999999999999999
Q ss_pred HHHhCCCcEEEEEe
Q 010123 314 EFQKGSSHMAAVVK 327 (517)
Q Consensus 314 ~m~~~~~~~apVVD 327 (517)
.|.+++.+.+||+|
T Consensus 78 ~~~~~~~~~~~Vv~ 91 (108)
T cd04596 78 MMIWEGIEMLPVVD 91 (108)
T ss_pred HHHHcCCCeeeEEc
Confidence 99999999999998
No 26
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.39 E-value=3.9e-12 Score=108.87 Aligned_cols=92 Identities=41% Similarity=0.630 Sum_probs=78.6
Q ss_pred cceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCC--cccccccccCCcccCCCCCHHHH
Q 010123 234 ESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETE--TPVSAVSIRRMPRVPADMPLYDI 311 (517)
Q Consensus 234 ~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~--~~V~dim~r~v~~V~~~~~l~da 311 (517)
+++++++.+.++. ++++.|.+.+++.+||++++.++++|+++.+|++....... .++.++ +++++++++++++.++
T Consensus 1 ~~~~~i~~~~~i~-~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~-~~~~~~v~~~~~l~~~ 78 (111)
T cd04590 1 TDIVALDADDTLE-EILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRDL-LRPPLFVPESTPLDDL 78 (111)
T ss_pred CceEEEcCCCCHH-HHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCCcCCHHHH-hcCCeecCCCCcHHHH
Confidence 3678899999999 99999999999999999764378999999999987654322 356665 5788999999999999
Q ss_pred HHHHHhCCCcEEEEEe
Q 010123 312 LNEFQKGSSHMAAVVK 327 (517)
Q Consensus 312 L~~m~~~~~~~apVVD 327 (517)
++.|.+++.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~Vv~ 94 (111)
T cd04590 79 LEEMRKERSHMAIVVD 94 (111)
T ss_pred HHHHHhcCCcEEEEEE
Confidence 9999999999999999
No 27
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.38 E-value=4.2e-12 Score=109.65 Aligned_cols=91 Identities=19% Similarity=0.296 Sum_probs=79.2
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC----CcccccccccCCcccCCCCCHHH
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET----ETPVSAVSIRRMPRVPADMPLYD 310 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~----~~~V~dim~r~v~~V~~~~~l~d 310 (517)
++..+++++++. ++++.|.+.+++++||++++ ++++|+++.+|++....+. ..++.++|.++++++++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~ 79 (115)
T cd04593 2 PPPVLSATTPLR-EAAEQLIESKHGSALVVDRD-GGVVGIITLPDLLRALEADEAGEPSAVDEVATPPLLTVHPDEPLAH 79 (115)
T ss_pred CCcEeCCCCCHH-HHHHHHHhCCCcEEEEEcCC-CCEEEEEEHHHHHHHHhcccccccccHHHhccCCceEECCCCCHHH
Confidence 355788999999 99999999999999999865 8999999999998654321 23478888888999999999999
Q ss_pred HHHHHHhCCCcEEEEEe
Q 010123 311 ILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 311 aL~~m~~~~~~~apVVD 327 (517)
+++.|.+++.+.+||+|
T Consensus 80 ~l~~~~~~~~~~~~Vvd 96 (115)
T cd04593 80 ALDRMASRGLRQLPVVD 96 (115)
T ss_pred HHHHHHHcCCceeeEEe
Confidence 99999999999999998
No 28
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.38 E-value=4.2e-12 Score=108.37 Aligned_cols=79 Identities=14% Similarity=0.351 Sum_probs=71.2
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCcccCCCCCHHHHHHH
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNE 314 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~daL~~ 314 (517)
+++++++++++. ++.+.|.+++++.+||++++.++++|+|+.+|+..... +.++.+++++.++++.
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~-------------~~~v~~~~~l~~a~~~ 67 (98)
T cd04618 2 KLVVFDTKLPVK-KAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR-------------LVSIHPERSLFDAALL 67 (98)
T ss_pred eEEEECCCCcHH-HHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee-------------eEEeCCCCcHHHHHHH
Confidence 578999999999 99999999999999999864478999999999975321 6689999999999999
Q ss_pred HHhCCCcEEEEEe
Q 010123 315 FQKGSSHMAAVVK 327 (517)
Q Consensus 315 m~~~~~~~apVVD 327 (517)
|.+++.+.+||+|
T Consensus 68 m~~~~~~~lpVvd 80 (98)
T cd04618 68 LLKNKIHRLPVID 80 (98)
T ss_pred HHHCCCCEeeEEE
Confidence 9999999999999
No 29
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.38 E-value=2.2e-12 Score=132.95 Aligned_cols=103 Identities=16% Similarity=0.142 Sum_probs=89.7
Q ss_pred ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc---CCcccccccccCC
Q 010123 223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE---TETPVSAVSIRRM 299 (517)
Q Consensus 223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~---~~~~V~dim~r~v 299 (517)
..+|+++|++..++.++++++++. ++++.|.+++.+.+||++++ ++++|+|+.+|+...... .+.++.++|.+++
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~-~a~~~~~~~~~~~~~Vvd~~-g~~iG~vt~~dl~~~~~~~~~~~~~v~~im~~~~ 273 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVM-DAMLELSRTGLGLVAVCDAQ-QQVQGVFTDGDLRRWLVGGGALTTPVNEAMTRGG 273 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEecHHHHHHHHhCCCCcCCcHHHhcCCCC
Confidence 468999998532388999999999 99999999999999999865 899999999998754322 2467899998999
Q ss_pred cccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 300 PRVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 300 ~~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
+++++++++.++++.|.+++...+||+|
T Consensus 274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd 301 (321)
T PRK11543 274 TTLQAQSRAIDAKEILMKRKITAAPVVD 301 (321)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEEc
Confidence 9999999999999999999999999999
No 30
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.38 E-value=5.1e-12 Score=110.25 Aligned_cols=91 Identities=18% Similarity=0.361 Sum_probs=80.1
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC--------------CcccccccccCCc
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET--------------ETPVSAVSIRRMP 300 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~--------------~~~V~dim~r~v~ 300 (517)
++.+++.+.++. ++.+.|.+.+++++||++++ ++++|+|+.+|++...... ..++.++|.++++
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (124)
T cd04600 3 DVVTVTPDTSLE-EAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVV 80 (124)
T ss_pred CcEEeCCCCCHH-HHHHHHHHcCCceeeEECCC-CCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCCCe
Confidence 677899999999 99999999999999999865 8999999999997543221 2368888888899
Q ss_pred ccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 301 RVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 301 ~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
++++++++.++++.|.+++.+.+||+|
T Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~~Vv~ 107 (124)
T cd04600 81 TVRPDTPIAELVPLLADGGHHHVPVVD 107 (124)
T ss_pred eeCCCCcHHHHHHHHHhcCCCceeEEc
Confidence 999999999999999999999999998
No 31
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=5.3e-12 Score=110.33 Aligned_cols=92 Identities=15% Similarity=0.276 Sum_probs=79.9
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC---------------CcccccccccCC
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET---------------ETPVSAVSIRRM 299 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~---------------~~~V~dim~r~v 299 (517)
++.+++++.++. ++++.+.+.+++.+||++++.++++|+|+.+|++....+. ..++.++|.+++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
T cd04631 2 DVVTVPPTTPIM-EAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNV 80 (125)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcCCc
Confidence 567889999999 9999999999999999986447899999999998644321 246888888889
Q ss_pred cccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 300 PRVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 300 ~~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
+++++++++.++++.|.+.+.+.+||+|
T Consensus 81 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~ 108 (125)
T cd04631 81 ITITPDDSIKDAAELMLEKRVGGLPVVD 108 (125)
T ss_pred eEeCCCCcHHHHHHHHHHcCCceEEEEc
Confidence 9999999999999999999999999998
No 32
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.36 E-value=5.3e-12 Score=137.06 Aligned_cols=100 Identities=15% Similarity=0.220 Sum_probs=89.9
Q ss_pred cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCcc
Q 010123 222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPR 301 (517)
Q Consensus 222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~ 301 (517)
...+++++|+ .+++++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|+.... ...++.++|.+++++
T Consensus 87 ~~VKv~~iMi--~~pvtv~~d~tv~-eA~~~m~~~~~s~l~VVD~~-gklvGIVT~rDL~~~~--~~~~V~diMt~~~it 160 (479)
T PRK07807 87 AWVKSRDLVF--DTPVTLSPDDTVG-DALALLPKRAHGAVVVVDEE-GRPVGVVTEADCAGVD--RFTQVRDVMSTDLVT 160 (479)
T ss_pred hhcccccccc--cCCeEECCCCCHH-HHHHHHHhcCCceEEEECCC-CeEEEEEeHHHHhcCc--cCCCHHHhccCCceE
Confidence 4567889998 4788999999999 99999999999999999865 7899999999997543 246799999999999
Q ss_pred cCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 302 VPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 302 V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
+++++++.++++.|.+++.+.+||+|
T Consensus 161 V~~d~sL~eAl~lM~~~~i~~LPVVD 186 (479)
T PRK07807 161 LPAGTDPREAFDLLEAARVKLAPVVD 186 (479)
T ss_pred ECCCCcHHHHHHHHHhcCCCEEEEEc
Confidence 99999999999999999999999999
No 33
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=6.9e-12 Score=107.46 Aligned_cols=91 Identities=20% Similarity=0.311 Sum_probs=79.4
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc---CCcccccccccCCcccCCCCCHHHH
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE---TETPVSAVSIRRMPRVPADMPLYDI 311 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~---~~~~V~dim~r~v~~V~~~~~l~da 311 (517)
++..++.+.++. ++.+.+.+.+++++||++++ ++++|+|+.+|++....+ .+.++.++|.++++.+++++++.++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~ 79 (112)
T cd04624 2 PVVTVDPDTSIR-EAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAAGIDLDTPVSEIMTRDLVTVDPDEPVAEA 79 (112)
T ss_pred CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEeeHHHHHHHHhccCCCccCHHHhccCCCEEECCCCcHHHH
Confidence 456789999998 99999999999999999876 899999999999765322 2357888888899999999999999
Q ss_pred HHHHHhCCCcEEEEEe
Q 010123 312 LNEFQKGSSHMAAVVK 327 (517)
Q Consensus 312 L~~m~~~~~~~apVVD 327 (517)
++.|.+++...+||+|
T Consensus 80 ~~~~~~~~~~~~~Vv~ 95 (112)
T cd04624 80 AKLMRKNNIRHHLVVD 95 (112)
T ss_pred HHHHHHcCccEEEEEc
Confidence 9999999999999998
No 34
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.36 E-value=6.7e-12 Score=113.12 Aligned_cols=91 Identities=13% Similarity=0.155 Sum_probs=79.8
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC---------------------------
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET--------------------------- 287 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~--------------------------- 287 (517)
++.++++++++. ++++.|.+.+++.+||++++ ++++|+|+.+|++......
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~l~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (135)
T cd04621 2 DIATVHPEHSLL-HVVDEMEKNGVGRVIVVDDN-GKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEV 79 (135)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCCCcceEECCC-CCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccc
Confidence 467789999999 99999999999999999865 8999999999998654211
Q ss_pred CcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 288 ETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 288 ~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
+.++.++|.+++++|++++++.++++.|.+++.+.+||+|
T Consensus 80 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~ 119 (135)
T cd04621 80 PLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVD 119 (135)
T ss_pred cccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEe
Confidence 3468899888889999999999999999999999999998
No 35
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.35 E-value=8.8e-12 Score=105.41 Aligned_cols=88 Identities=9% Similarity=0.216 Sum_probs=78.6
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCcccCCCCCHHHHHHH
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNE 314 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~daL~~ 314 (517)
++..+++++++. ++++.|.+++++.+||++ + ++++|+++.+|++.... +.++.++|..+++++++++++.++++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d-~-~~~~Giv~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~ 76 (105)
T cd04599 2 DPITIDPLDSVG-RAARLMEKHRIGGLPVVE-D-GKLVGIITSRDVRRAHP--NRLVADAMTREVVTISPEASLLEAKRL 76 (105)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEEE-C-CEEEEEEehHHhhcccc--cCCHHHHccCCCEEECCCCCHHHHHHH
Confidence 466789999999 999999999999999997 3 79999999999987543 457888888889999999999999999
Q ss_pred HHhCCCcEEEEEe
Q 010123 315 FQKGSSHMAAVVK 327 (517)
Q Consensus 315 m~~~~~~~apVVD 327 (517)
|.+++...+||+|
T Consensus 77 ~~~~~~~~~~Vv~ 89 (105)
T cd04599 77 MEEKKIERLPVLR 89 (105)
T ss_pred HHHcCCCEeeEEE
Confidence 9999999999998
No 36
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=6.9e-12 Score=107.28 Aligned_cols=91 Identities=29% Similarity=0.459 Sum_probs=79.8
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc--CCcccccccccCCcccCCCCCHHHHH
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE--TETPVSAVSIRRMPRVPADMPLYDIL 312 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~--~~~~V~dim~r~v~~V~~~~~l~daL 312 (517)
++.+++.++++. ++++.+.+.+++++||++++ ++++|+|+.+|+...... .+.++.++|.++++++++++++.+++
T Consensus 2 ~~~~v~~~~~i~-e~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~ 79 (111)
T cd04639 2 HFETLSPADTLD-DAADALLATTQHEFPVVDGD-GHLVGLLTRDDLIRALAEGGPDAPVRGVMRRDFPTVSPSATLDAVL 79 (111)
T ss_pred CceEcCCCCcHH-HHHHHHHHcCCCcceEECCC-CcEEEEeeHHHHHHHHHhcCCCCcHHHHhcCCCcEECCCCcHHHHH
Confidence 467789999999 99999988999999999865 789999999999865322 23578899888999999999999999
Q ss_pred HHHHhCCCcEEEEEe
Q 010123 313 NEFQKGSSHMAAVVK 327 (517)
Q Consensus 313 ~~m~~~~~~~apVVD 327 (517)
+.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~~~Vv~ 94 (111)
T cd04639 80 RLMQQGGAPAVPVVD 94 (111)
T ss_pred HHHHhcCCceeeEEc
Confidence 999999999999998
No 37
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=7.9e-12 Score=109.60 Aligned_cols=92 Identities=21% Similarity=0.257 Sum_probs=75.6
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC--C-----------cccccccccCCcc
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET--E-----------TPVSAVSIRRMPR 301 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~--~-----------~~V~dim~r~v~~ 301 (517)
++.+++.++++. ++++.|.+++++++||++++.++++|+|+.+|++....+. . ..+.++|.+++.+
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (123)
T cd04627 2 PFIPVPSTASLF-QAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVIS 80 (123)
T ss_pred CceecCCCCCHH-HHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceE
Confidence 467789999999 9999999999999999986336899999999987643211 0 0112356778889
Q ss_pred cCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 302 VPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 302 V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
+++++++.++++.|.+++.+.+||+|
T Consensus 81 v~~~~~l~~a~~~m~~~~~~~lpVvd 106 (123)
T cd04627 81 INGDQPLIDALHLMHNEGISSVAVVD 106 (123)
T ss_pred eCCCCCHHHHHHHHHHcCCceEEEEC
Confidence 99999999999999999999999998
No 38
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=7.8e-12 Score=110.24 Aligned_cols=91 Identities=15% Similarity=0.237 Sum_probs=76.6
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCc-----------------cccccccc
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETET-----------------PVSAVSIR 297 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~-----------------~V~dim~r 297 (517)
+++++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|++....+... ...+.|.+
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (126)
T cd04642 2 KVVSIDSDERVL-DAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSR 79 (126)
T ss_pred CeEEECCCccHH-HHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccC
Confidence 577899999999 99999999999999999865 899999999999865422111 11235667
Q ss_pred CCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 298 RMPRVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 298 ~v~~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
+++++++++++.++++.|.+++.+.+||+|
T Consensus 80 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd 109 (126)
T cd04642 80 PLITCTPSSTLKEVITKLVANKVHRVWVVD 109 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHhCCcEEEEEC
Confidence 888999999999999999999999999998
No 39
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.34 E-value=5e-12 Score=140.56 Aligned_cols=103 Identities=17% Similarity=0.228 Sum_probs=90.4
Q ss_pred ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc----CCcccccccc
Q 010123 221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE----TETPVSAVSI 296 (517)
Q Consensus 221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~----~~~~V~dim~ 296 (517)
++..+|+|+|++ ++.++++++++. ++.+.+.+++++.+||+|++ ++++|+|+.+|+.+...+ .+.++.++|.
T Consensus 444 L~~~~V~dim~~--~~~~v~~~~tl~-ea~~~l~~~~~~~~~VvD~~-g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~ 519 (574)
T PRK01862 444 LRTTQMRELIQP--AQTVVPPTASVA-DMTRVFLEYPVKYLYVVDDD-GRFRGAVALKDITSDLLDKRDTTDKTAADYAH 519 (574)
T ss_pred HhhCcHHHHhcC--CCceeCCCCCHH-HHHHHHHhCCCceEEEEcCC-CeEEEEEEHHHHHHHhhcccccccchHHHhcc
Confidence 566789999985 667899999999 99999999999999999865 789999999999863211 2357889998
Q ss_pred cCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 297 RRMPRVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 297 r~v~~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
++++++++++++.++++.|.+++.+.+||+|
T Consensus 520 ~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd 550 (574)
T PRK01862 520 TPFPLLTPDMPLGDALEHFMAFQGERLPVVE 550 (574)
T ss_pred CCCeeECCCCCHHHHHHHHHhcCCCeeeeEe
Confidence 8999999999999999999999999999999
No 40
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=9.9e-12 Score=108.13 Aligned_cols=91 Identities=20% Similarity=0.306 Sum_probs=79.7
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc-------------CCcccccccccCCcc
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE-------------TETPVSAVSIRRMPR 301 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~-------------~~~~V~dim~r~v~~ 301 (517)
++.++++++++. ++.+.|.+.+++++||++++ ++++|+++.+|++..... ...++.++|.+++++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 79 (122)
T cd04803 2 PVVTLSEDDSLA-DAEELMREHRIRHLPVVNED-GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLT 79 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCcccccEECCC-CCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeE
Confidence 466789999999 99999999999999999865 899999999999864321 245688888888999
Q ss_pred cCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 302 VPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 302 V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
+++++++.++++.|.+++.+.+||+|
T Consensus 80 v~~~~~~~~~~~~~~~~~~~~~~Vv~ 105 (122)
T cd04803 80 VTPDTPLREAAEIMVENKIGCLPVVD 105 (122)
T ss_pred eCCCCcHHHHHHHHHHcCCCeEEEEc
Confidence 99999999999999999999999998
No 41
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=1.3e-11 Score=106.18 Aligned_cols=89 Identities=17% Similarity=0.221 Sum_probs=76.5
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC---------CcccccccccCCcccCCC
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET---------ETPVSAVSIRRMPRVPAD 305 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~---------~~~V~dim~r~v~~V~~~ 305 (517)
++++++.++++. ++++.|.+.+++.+||++++ ++++|+|+.+|++...... +.++.++|.+++++++++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~ 79 (116)
T cd04643 2 EVAYVQDTNTLR-HALLVLTKHGYSAIPVLDKE-GKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDD 79 (116)
T ss_pred CcEEECCCCcHH-HHHHHHHHCCCceeeeECCC-CcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCCCceecCC
Confidence 577899999999 99999999999999999864 7899999999998654321 356888888889999999
Q ss_pred CCHHHHHHHHHhCCCcEEEEEe
Q 010123 306 MPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 306 ~~l~daL~~m~~~~~~~apVVD 327 (517)
+++.++++.|.+.+ .+||+|
T Consensus 80 ~~l~~a~~~~~~~~--~~~Vv~ 99 (116)
T cd04643 80 ADIEEILHLLIDQP--FLPVVD 99 (116)
T ss_pred CCHHHHHHHHhcCC--ceeEEe
Confidence 99999999998865 589998
No 42
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.33 E-value=6.8e-12 Score=108.20 Aligned_cols=91 Identities=15% Similarity=0.233 Sum_probs=76.4
Q ss_pred ceEEecCCCChhHHHHHHHHHcC-CcEEEEEeCCCCCEEEEEEhhhHhcccccC--Cccccccccc--CCcccCCCCCHH
Q 010123 235 STFSLDVNSKLDWEAIGKILARG-HSRVPIYSGNPKNIIGLLLVKSLLTVRAET--ETPVSAVSIR--RMPRVPADMPLY 309 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g-~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~--~~~V~dim~r--~v~~V~~~~~l~ 309 (517)
++.++++++++. ++++.+.+++ ++++||++++ ++++|+|+.+|++....+. +.++.++|.. +++.+.+++++.
T Consensus 2 ~~~~~~~~~~l~-~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~ 79 (114)
T cd04801 2 DFPTVPAHLTLR-EFVREYVLGSNQRRFVVVDNE-GRYVGIISLADLRAIPTSQWAQTTVIQVMTPAAKLVTVLSEESLA 79 (114)
T ss_pred CcceeCCCCCHH-HHHHHHhccCCceeEEEEcCC-CcEEEEEEHHHHHHHHHhhccccchhhhhcccccceEECCCCcHH
Confidence 567889999999 9999887665 8999999765 8899999999998754322 3578888742 366899999999
Q ss_pred HHHHHHHhCCCcEEEEEe
Q 010123 310 DILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 310 daL~~m~~~~~~~apVVD 327 (517)
++++.|++++.+.+||+|
T Consensus 80 ~a~~~~~~~~~~~l~Vv~ 97 (114)
T cd04801 80 EVLKLLEEQGLDELAVVE 97 (114)
T ss_pred HHHHHHHHCCCCeeEEEc
Confidence 999999999999999998
No 43
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.33 E-value=1.5e-11 Score=105.20 Aligned_cols=91 Identities=14% Similarity=0.252 Sum_probs=80.1
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC----CcccccccccCCcccCCCCCHHH
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET----ETPVSAVSIRRMPRVPADMPLYD 310 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~----~~~V~dim~r~v~~V~~~~~l~d 310 (517)
++.++++++++. ++++.+.+.+++++||++++ ++++|+++.+|+.....+. ..++.++|.+++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~ 79 (114)
T cd04613 2 DVVTIPEDTPLN-ELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREILFDPSLYDLVVASDIMTKPPVVVYPEDSLED 79 (114)
T ss_pred CceeeCCCCcHH-HHHHHHHhCCCcceeEECCC-CCEEEEEEHHHHHHHHhcccccccEEHHHhccCCCcEEcCCCCHHH
Confidence 467799999999 99999999999999999875 7899999999998643221 25788888889999999999999
Q ss_pred HHHHHHhCCCcEEEEEe
Q 010123 311 ILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 311 aL~~m~~~~~~~apVVD 327 (517)
+++.|++.+.+.+||+|
T Consensus 80 ~~~~~~~~~~~~~~Vv~ 96 (114)
T cd04613 80 ALKKFEDSDYEQLPVVD 96 (114)
T ss_pred HHHHHhhCCccEeeEEe
Confidence 99999999999999998
No 44
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.33 E-value=1.7e-11 Score=104.49 Aligned_cols=90 Identities=23% Similarity=0.342 Sum_probs=79.5
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc---CCcccccccccCCcccCCCCCHHHH
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE---TETPVSAVSIRRMPRVPADMPLYDI 311 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~---~~~~V~dim~r~v~~V~~~~~l~da 311 (517)
++.+++++.++. ++++.|.+.++..+||+++ ++++|+++.+|++..... ...++.++|.++++++++++++.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~ 78 (111)
T cd04611 2 QILTCPPDTSLA-EAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGPDLQTPVGEVMSSPLLTVPADTSLYDA 78 (111)
T ss_pred CceEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCCCCCcCHHHhcCCCceEECCCCCHHHH
Confidence 567889999999 9999999999999999976 789999999999865432 3467888888889999999999999
Q ss_pred HHHHHhCCCcEEEEEe
Q 010123 312 LNEFQKGSSHMAAVVK 327 (517)
Q Consensus 312 L~~m~~~~~~~apVVD 327 (517)
++.|.+.+.+.+||+|
T Consensus 79 l~~~~~~~~~~~~Vv~ 94 (111)
T cd04611 79 RQLMREHGIRHLVVVD 94 (111)
T ss_pred HHHHHHcCCeEEEEEC
Confidence 9999999999999998
No 45
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.33 E-value=1.3e-11 Score=107.49 Aligned_cols=91 Identities=13% Similarity=0.256 Sum_probs=78.4
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc----CCccccccccc--CCcccCCCCCH
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE----TETPVSAVSIR--RMPRVPADMPL 308 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~----~~~~V~dim~r--~v~~V~~~~~l 308 (517)
++.++++++++. ++++.|.+++.+.+||++++ ++++|+|+.+|++..... ...++.++|.+ +++++++++++
T Consensus 2 ~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l 79 (118)
T cd04617 2 PPVVVRENTSVY-DAIVTLFLEDVGSLFVVDED-GDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESV 79 (118)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcH
Confidence 467899999999 99999999999999999865 789999999998865432 13467788764 68899999999
Q ss_pred HHHHHHHHhCCCcEEEEEe
Q 010123 309 YDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 309 ~daL~~m~~~~~~~apVVD 327 (517)
.++++.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~~~~~lpVvd 98 (118)
T cd04617 80 LEAAKKLIEHQVDSLPVVE 98 (118)
T ss_pred HHHHHHHHHcCCCEeeEEe
Confidence 9999999999999999999
No 46
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.32 E-value=1.9e-11 Score=103.86 Aligned_cols=90 Identities=17% Similarity=0.273 Sum_probs=79.7
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCcccCCCCCHHHHHHH
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNE 314 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~daL~~ 314 (517)
++..++++.++. ++++.|.++++.++||++++ ++++|+|+.+|++.... ...++.++|.+.++++++++++.++++.
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~-~~~~v~~~~~~~~~~v~~~~~~~~~~~~ 79 (109)
T cd04583 3 NPVTITPDRTLA-EAIKLMRDKKVDSLLVVDKD-NKLLGIVSLESLEQAYK-EAKSLEDIMLEDVFTVQPDASLRDVLGL 79 (109)
T ss_pred CCEEECCCCCHH-HHHHHHHHCCCceEEEEcCC-CcEEEEEEHHHHHHHhh-cCCcHhHhhcCCceEECCCCcHHHHHHH
Confidence 567789999999 99999999999999999865 78999999999986532 2457888888889999999999999999
Q ss_pred HHhCCCcEEEEEe
Q 010123 315 FQKGSSHMAAVVK 327 (517)
Q Consensus 315 m~~~~~~~apVVD 327 (517)
|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~vv~ 92 (109)
T cd04583 80 VLKRGPKYVPVVD 92 (109)
T ss_pred HHHcCCceeeEEC
Confidence 9999999999998
No 47
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.32 E-value=1.7e-11 Score=104.52 Aligned_cols=90 Identities=20% Similarity=0.308 Sum_probs=78.9
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCC---cccccccccCCcccCCCCCHHHH
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETE---TPVSAVSIRRMPRVPADMPLYDI 311 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~---~~V~dim~r~v~~V~~~~~l~da 311 (517)
+++.+++++++. ++++.|.+.+++++||+++ ++++|+++.+|++....... .++.++|.++++++++++++.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 78 (111)
T cd04612 2 DVVTVPVDLTVD-EVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGREATVLVGDVMTRDPVTASPDETLRDA 78 (111)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCcccccCHHHhccCCCeEECCCCCHHHH
Confidence 567899999999 9999999999999999986 88999999999987543321 15678888899999999999999
Q ss_pred HHHHHhCCCcEEEEEe
Q 010123 312 LNEFQKGSSHMAAVVK 327 (517)
Q Consensus 312 L~~m~~~~~~~apVVD 327 (517)
++.|++.+.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~V~~ 94 (111)
T cd04612 79 LKRMAERDIGRLPVVD 94 (111)
T ss_pred HHHHHhCCCCeeeEEc
Confidence 9999999999999998
No 48
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.32 E-value=2e-11 Score=104.62 Aligned_cols=90 Identities=18% Similarity=0.266 Sum_probs=78.7
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc----CCcccccccccCCcccCCCCCHHH
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE----TETPVSAVSIRRMPRVPADMPLYD 310 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~----~~~~V~dim~r~v~~V~~~~~l~d 310 (517)
+++.++.+.++. ++++.|.+.++..+||+++ ++++|+++.+|++....+ .+.++.++|.+++++|++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~ 78 (111)
T cd04589 2 PPLIVDASTSIR-DAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGLPSSTPVGEIATFPLITVDPDDFLFN 78 (111)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCCCcEEECCCCcHHH
Confidence 456789999999 9999999999999999976 689999999999865322 245788888888999999999999
Q ss_pred HHHHHHhCCCcEEEEEe
Q 010123 311 ILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 311 aL~~m~~~~~~~apVVD 327 (517)
+++.|.+++.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~~Vv~ 95 (111)
T cd04589 79 ALLLMTRHRIHRVVVRE 95 (111)
T ss_pred HHHHHHHhCccEEEEee
Confidence 99999999999999998
No 49
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.32 E-value=1.9e-11 Score=104.33 Aligned_cols=90 Identities=18% Similarity=0.249 Sum_probs=79.1
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC--CcccccccccCCcccCCCCCHHHHH
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET--ETPVSAVSIRRMPRVPADMPLYDIL 312 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~--~~~V~dim~r~v~~V~~~~~l~daL 312 (517)
+++.++.++++. ++.+.|.+.+++++||+++ ++++|+++.+|++.....+ ..++.++|.++++++++++++.+++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~ 78 (110)
T cd04588 2 PLITLNPNATLR-EAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGLELAKVKDVMTKDVITIDEDEQLYDAI 78 (110)
T ss_pred CcEEECCCCCHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccccccCHHHHhcCCceEECCCCCHHHHH
Confidence 567789999999 9999999999999999976 7899999999998754332 2468888888889999999999999
Q ss_pred HHHHhCCCcEEEEEe
Q 010123 313 NEFQKGSSHMAAVVK 327 (517)
Q Consensus 313 ~~m~~~~~~~apVVD 327 (517)
+.|.+.+.+.+||+|
T Consensus 79 ~~~~~~~~~~~~V~~ 93 (110)
T cd04588 79 RLMNKHNVGRLIVTD 93 (110)
T ss_pred HHHHhcCCCEEEEEC
Confidence 999999999999998
No 50
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=1.5e-11 Score=109.30 Aligned_cols=91 Identities=15% Similarity=0.257 Sum_probs=78.7
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC----C--------------------cc
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET----E--------------------TP 290 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~----~--------------------~~ 290 (517)
++.++.+++++. ++++.+.+.+++++||++++ ++++|+++.+|++...... . .+
T Consensus 2 ~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (132)
T cd04636 2 DVITVKKDDTLR-DVVEILLTGKISGVPVVDNE-GRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKK 79 (132)
T ss_pred CCeEeCCCCcHH-HHHHHHHHhCCCccceECCC-CCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCC
Confidence 467889999999 99999999999999999865 8999999999997643221 1 16
Q ss_pred cccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 291 VSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 291 V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
+.++|.++++++++++++.++++.|.+.+.+.+||+|
T Consensus 80 v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~ 116 (132)
T cd04636 80 VEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD 116 (132)
T ss_pred HHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEE
Confidence 7888888899999999999999999999999999999
No 51
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.32 E-value=1.9e-11 Score=105.26 Aligned_cols=90 Identities=16% Similarity=0.162 Sum_probs=78.0
Q ss_pred eEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc---CCcccccccccCCcccCCCCCHHHHH
Q 010123 236 TFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE---TETPVSAVSIRRMPRVPADMPLYDIL 312 (517)
Q Consensus 236 vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~---~~~~V~dim~r~v~~V~~~~~l~daL 312 (517)
.++++.++++. ++++.|.+.++..+||++++ ++++|+|+.+|++..... .+.++.++|..++.+|++++++.+++
T Consensus 4 ~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 81 (113)
T cd04607 4 QLLVSPDASIL-DALRKIDKNALRIVLVVDEN-GRLLGTVTDGDIRRALLKGLSLDDPVSEVMNRNPITAKVGSSREEIL 81 (113)
T ss_pred ceEECCCCCHH-HHHHHHHhcCcCEEEEECCC-CCEEEEEEcHHHHHHHhcCCCcCCCHHHhhcCCCEEEcCCCCHHHHH
Confidence 46789999999 99999999999999999765 889999999998754322 23568898877888999999999999
Q ss_pred HHHHhCCCcEEEEEe
Q 010123 313 NEFQKGSSHMAAVVK 327 (517)
Q Consensus 313 ~~m~~~~~~~apVVD 327 (517)
+.|.+++.+.+||+|
T Consensus 82 ~~~~~~~~~~~~Vv~ 96 (113)
T cd04607 82 ALMRERSIRHLPILD 96 (113)
T ss_pred HHHHHCCCCEEEEEC
Confidence 999999999999998
No 52
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=1.7e-11 Score=106.68 Aligned_cols=91 Identities=11% Similarity=0.216 Sum_probs=78.9
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc-------------cCCcccccccccCCcc
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA-------------ETETPVSAVSIRRMPR 301 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~-------------~~~~~V~dim~r~v~~ 301 (517)
+++++.+++++. ++++.+.+.+++.+||++++ ++++|+++.+|++.... ....++.++|.++++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (122)
T cd04635 2 EPVTCTPDDPVS-KVWDLMLESGFTGLPVVQKA-GELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYS 79 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCee
Confidence 577899999999 99999999999999999764 89999999999975310 1235677888888899
Q ss_pred cCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 302 VPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 302 V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
+++++++.++++.|.+++.+.+||+|
T Consensus 80 v~~~~~l~~~~~~~~~~~~~~~~Vvd 105 (122)
T cd04635 80 VTPDDSIATAVELMLEHDIGRLPVVN 105 (122)
T ss_pred ECCCCCHHHHHHHHHHcCCCeeeEEc
Confidence 99999999999999999999999998
No 53
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=2e-11 Score=107.74 Aligned_cols=91 Identities=18% Similarity=0.300 Sum_probs=74.3
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccc----------ccCCcccccccccCCccc--
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVR----------AETETPVSAVSIRRMPRV-- 302 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~----------~~~~~~V~dim~r~v~~V-- 302 (517)
++.++..++++. ++++.|.++++..+||++++ ++++|+++.+|+.... ...+.++.++|.++...+
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~ 79 (126)
T cd04640 2 KPIVIPADTSID-EALELMIKHGVRLLLVVDSD-DNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKAL 79 (126)
T ss_pred CCeEECCCCcHH-HHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccc
Confidence 356789999999 99999998999999999865 7899999999987521 112456888886554333
Q ss_pred ----CCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 303 ----PADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 303 ----~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
.+++++.++++.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~l~~~l~~m~~~~~~~lpVvd 108 (126)
T cd04640 80 DLEELENASVGDVVETLKASGRQHALVVD 108 (126)
T ss_pred cHHHhccCcHHHHHHHHHHCCCceEEEEE
Confidence 3789999999999999999999999
No 54
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.30 E-value=3e-11 Score=103.29 Aligned_cols=90 Identities=19% Similarity=0.346 Sum_probs=79.5
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc--CCcccccccccCCcccCCCCCHHHHH
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE--TETPVSAVSIRRMPRVPADMPLYDIL 312 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~--~~~~V~dim~r~v~~V~~~~~l~daL 312 (517)
++.+++.+.++. ++.+.+.+.+++++||+++ ++++|+|+.+|+...... ...++.++|.++++++++++++.+++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~ 79 (110)
T cd04595 3 PVKTVRPEATIE-EARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHGLGHAPVKDYMSTDVVTVPPDTPLSEVQ 79 (110)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhcccccCcHHHHhcCCCEEECCCCcHHHHH
Confidence 567889999999 9999999999999999986 789999999998764321 24678899888999999999999999
Q ss_pred HHHHhCCCcEEEEEe
Q 010123 313 NEFQKGSSHMAAVVK 327 (517)
Q Consensus 313 ~~m~~~~~~~apVVD 327 (517)
+.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~~~V~~ 94 (110)
T cd04595 80 ELMVEHDIGRVPVVE 94 (110)
T ss_pred HHHHHcCCCeeEEEe
Confidence 999999999999998
No 55
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.30 E-value=3.6e-11 Score=102.46 Aligned_cols=85 Identities=15% Similarity=0.200 Sum_probs=75.7
Q ss_pred EEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCcccCCCCCHHHHHHHHH
Q 010123 237 FSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQ 316 (517)
Q Consensus 237 v~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~daL~~m~ 316 (517)
.++++++++. ++++.+.+.+++++||+++ ++++|+++.+|++.... .++.++|..++++|++++++.++++.|.
T Consensus 4 ~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~---~~~~~~~~~~~~~v~~~~~l~~a~~~~~ 77 (104)
T cd04594 4 IKVKDYDKVY-EAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENATY---GDVVDYIVRGIPYVRLTSTAEEAWEVMM 77 (104)
T ss_pred eEECCCCCHH-HHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhcc---cchhhhhhcCCcEEcCCCCHHHHHHHHH
Confidence 3578999999 9999999999999999985 88999999999986432 3577888888899999999999999999
Q ss_pred hCCCcEEEEEe
Q 010123 317 KGSSHMAAVVK 327 (517)
Q Consensus 317 ~~~~~~apVVD 327 (517)
+++.+.+||+|
T Consensus 78 ~~~~~~~~Vv~ 88 (104)
T cd04594 78 KNKTRWCPVVD 88 (104)
T ss_pred HcCcceEEEEE
Confidence 99999999998
No 56
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.30 E-value=3.4e-11 Score=103.00 Aligned_cols=90 Identities=18% Similarity=0.259 Sum_probs=78.7
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc----CCcccccccccCCcccCCCCCHHH
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE----TETPVSAVSIRRMPRVPADMPLYD 310 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~----~~~~V~dim~r~v~~V~~~~~l~d 310 (517)
++.+++.+.++. ++.+.+.+.+++++||+++ ++++|+++.+|++..... .+.++.++|.++++++++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~ 78 (111)
T cd04800 2 PPVTCSPDTTIR-EAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTAPPITIPPDATVFE 78 (111)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhccCCCccCCHHHHhCCCCeEECCCCcHHH
Confidence 567889999999 9999999999999999986 899999999998753211 235688888889999999999999
Q ss_pred HHHHHHhCCCcEEEEEe
Q 010123 311 ILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 311 aL~~m~~~~~~~apVVD 327 (517)
+++.|.+++.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~~Vv~ 95 (111)
T cd04800 79 ALLLMLERGIHHLPVVD 95 (111)
T ss_pred HHHHHHHcCCCeeeEeE
Confidence 99999999999999998
No 57
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.29 E-value=3.5e-11 Score=102.05 Aligned_cols=88 Identities=10% Similarity=0.101 Sum_probs=77.1
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCcccCCCCCHHHHHHH
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNE 314 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~daL~~ 314 (517)
++.+++++.++. ++++.|.+.+++.+||++++ ++++|+++.+|++.... .++.++|.+++..+++++++.++++.
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~~~v~d~~-g~~~Giv~~~dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (106)
T cd04582 2 EPITVRPDDPLS-DALGLMDDSDLRALTVVDAD-GQPLGFVTRREAARASG---GCCGDHAEPFKVTVSVDDDLRIVLSR 76 (106)
T ss_pred CCcEecCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEeHHHHHHhcc---cchhhhcccCCEEECCCCCHHHHHHH
Confidence 566789999998 99999999999999999765 89999999999986432 35778877777889999999999999
Q ss_pred HHhCCCcEEEEEe
Q 010123 315 FQKGSSHMAAVVK 327 (517)
Q Consensus 315 m~~~~~~~apVVD 327 (517)
|.+++...+||+|
T Consensus 77 ~~~~~~~~~~Vv~ 89 (106)
T cd04582 77 MFAHDMSWLPCVD 89 (106)
T ss_pred HHHCCCCeeeEEC
Confidence 9999999999999
No 58
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.29 E-value=3.5e-11 Score=102.07 Aligned_cols=88 Identities=15% Similarity=0.306 Sum_probs=78.2
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCcccCCCCCHHHHHHH
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNE 314 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~daL~~ 314 (517)
++.+++.+.++. ++++.+.+.+++.+||+++ ++++|+++.+|++... ...++.++|..+++++++++++.++++.
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~~~~--~~~~~~~~~~~~~~~v~~~~~l~~~~~~ 77 (107)
T cd04610 3 DVITVSPDNTVK-DVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLGKD--PDETVEEIMSKDLVVAVPEMDIMDAARV 77 (107)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhccC--ccccHHHhCCCCCeEECCCCCHHHHHHH
Confidence 577899999999 9999998888999999975 7899999999998642 2456889888888899999999999999
Q ss_pred HHhCCCcEEEEEe
Q 010123 315 FQKGSSHMAAVVK 327 (517)
Q Consensus 315 m~~~~~~~apVVD 327 (517)
|.+++.+.+||+|
T Consensus 78 ~~~~~~~~~~Vv~ 90 (107)
T cd04610 78 MFRTGISKLPVVD 90 (107)
T ss_pred HHHhCCCeEeEEC
Confidence 9999999999998
No 59
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=2.8e-11 Score=106.63 Aligned_cols=91 Identities=14% Similarity=0.281 Sum_probs=78.2
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc-----------------CCccccccccc
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE-----------------TETPVSAVSIR 297 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~-----------------~~~~V~dim~r 297 (517)
++.++++++++. ++++.|.+.+++.+||++++ ++++|+++.+|+...... .+.++.++|.+
T Consensus 2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (128)
T cd04632 2 DVITVREDDSVG-KAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSS 79 (128)
T ss_pred CceEeCCCCCHH-HHHHHHHHcCCCEEEEECCC-CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcC
Confidence 466789999999 99999999999999999865 889999999998743211 12468888888
Q ss_pred CCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 298 RMPRVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 298 ~v~~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
+++++++++++.++++.|.+.+.+.+||++
T Consensus 80 ~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~ 109 (128)
T cd04632 80 PVITASPNDSVRDAVDRMLENDDSSVVVVT 109 (128)
T ss_pred CCceECCCCcHHHHHHHHHhCCCCeEeEec
Confidence 899999999999999999999999998885
No 60
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.29 E-value=2.5e-11 Score=103.24 Aligned_cols=90 Identities=17% Similarity=0.255 Sum_probs=77.5
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCcccCC-CCCHHHHHH
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPA-DMPLYDILN 313 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~~-~~~l~daL~ 313 (517)
++..++.+.++. ++++.+.+++++++||++++ ++++|+++.+|++.... .+.++.++|..++.++.+ ++++.++++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~-~~~~v~~~~~~~~~~~~~~~~~l~~~~~ 79 (110)
T cd04601 3 DPITVSPDATVA-EALELMAEYGISGLPVVDDD-GKLVGIVTNRDLRFETD-LDKPVSEVMTPENLLTTVEGTSLEEALE 79 (110)
T ss_pred CCeEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CEEEEEEEhhHeeeccc-CCCCHHHhcccCceEEecCCCCHHHHHH
Confidence 567889999999 99999999999999999865 89999999999875432 356788988766666666 999999999
Q ss_pred HHHhCCCcEEEEEe
Q 010123 314 EFQKGSSHMAAVVK 327 (517)
Q Consensus 314 ~m~~~~~~~apVVD 327 (517)
.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~~Vv~ 93 (110)
T cd04601 80 LLHEHKIEKLPVVD 93 (110)
T ss_pred HHHHhCCCeeeEEc
Confidence 99999999999998
No 61
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=5.4e-11 Score=101.22 Aligned_cols=89 Identities=17% Similarity=0.247 Sum_probs=78.6
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCcccCCCCCHHHHHHH
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNE 314 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~daL~~ 314 (517)
++++++++.++. ++++.+.+.+++++||++++ ++++|+++.++++.... +.++.++|.+++.++++++++.++++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~ 77 (106)
T cd04638 2 NVVYVTLPGTRD-DVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLRNPE--EEQLALLMTRDPPTVSPDDDVKEAAKL 77 (106)
T ss_pred CcEEECCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhccc--cchHHHHhcCCCceECCCCCHHHHHHH
Confidence 567889999998 99999999999999999876 88999999999986432 346778888888999999999999999
Q ss_pred HHhCCCcEEEEEe
Q 010123 315 FQKGSSHMAAVVK 327 (517)
Q Consensus 315 m~~~~~~~apVVD 327 (517)
|.+++.+.+||+|
T Consensus 78 ~~~~~~~~~~Vvd 90 (106)
T cd04638 78 MVENNIRRVPVVD 90 (106)
T ss_pred HHHcCCCEEEEEE
Confidence 9999999999998
No 62
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=2.3e-11 Score=104.31 Aligned_cols=91 Identities=20% Similarity=0.269 Sum_probs=78.9
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc------cCCcccccccccCCcccCCCCCH
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA------ETETPVSAVSIRRMPRVPADMPL 308 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~------~~~~~V~dim~r~v~~V~~~~~l 308 (517)
++.+++++.++. ++.+.+.+.+++.+||++++ ++++|+|+.+|++.... ....++.++|.++++++++++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l 79 (114)
T cd04629 2 NPVTFTPDMSVT-EAVEKLLKSKISGGPVVDDN-GNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSI 79 (114)
T ss_pred CCeEeCCCCCHH-HHHHHHHhcCCCCccEECCC-CeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcH
Confidence 466789999999 99999998899999999865 78999999999985322 12457888888888899999999
Q ss_pred HHHHHHHHhCCCcEEEEEe
Q 010123 309 YDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 309 ~daL~~m~~~~~~~apVVD 327 (517)
.++++.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~~~~~~~Vv~ 98 (114)
T cd04629 80 VDLAQLMLKAKPKRYPVVD 98 (114)
T ss_pred HHHHHHHHHhCCCccCEEE
Confidence 9999999999999999998
No 63
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.28 E-value=2.5e-11 Score=104.01 Aligned_cols=85 Identities=19% Similarity=0.239 Sum_probs=73.2
Q ss_pred ecCCCChhHHHHHHHHHcCC-----cEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCcccCCCCCHHHHHH
Q 010123 239 LDVNSKLDWEAIGKILARGH-----SRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILN 313 (517)
Q Consensus 239 v~~d~tl~~eal~~l~~~g~-----Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~daL~ 313 (517)
+.+++++. ++++.|.++++ ..+||++++ ++++|+|+.+|++... .+.++.++|..+++.+++++++.++++
T Consensus 2 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~~l~~~~--~~~~v~~~~~~~~~~i~~~~~~~~~~~ 77 (109)
T cd04606 2 VREDWTVG-EALEYLRRNADDPETIYYIYVVDEE-GRLLGVVSLRDLLLAD--PDTPVSDIMDTDVISVSADDDQEEVAR 77 (109)
T ss_pred ccccCcHH-HHHHHHHhccCcccceeEEEEECCC-CCEEEEEEHHHHhcCC--CcchHHHHhCCCCeEEcCCCCHHHHHH
Confidence 46788898 99999987773 678999765 8899999999998643 345788988778889999999999999
Q ss_pred HHHhCCCcEEEEEe
Q 010123 314 EFQKGSSHMAAVVK 327 (517)
Q Consensus 314 ~m~~~~~~~apVVD 327 (517)
.|.+++.+.+||+|
T Consensus 78 ~~~~~~~~~~~Vv~ 91 (109)
T cd04606 78 LFEKYDLLALPVVD 91 (109)
T ss_pred HHHHcCCceeeeEC
Confidence 99999999999998
No 64
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.28 E-value=2.3e-11 Score=108.48 Aligned_cols=91 Identities=19% Similarity=0.291 Sum_probs=79.2
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc--------------------------cCC
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA--------------------------ETE 288 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~--------------------------~~~ 288 (517)
++.+++++.++. ++++.|.++++.++||++++ ++++|+++.+|++.... ...
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~~-~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04586 3 DVVTVSPETSVA-EAARLMLDNHISGLPVVDDD-GRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHG 80 (135)
T ss_pred CCEEeCCCCCHH-HHHHHHHHcCCCCceEECCC-CCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence 577899999999 99999999999999999764 89999999999875321 123
Q ss_pred cccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 289 TPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 289 ~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
.++.++|..+++++++++++.++++.|.+++.+.+||+|
T Consensus 81 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd 119 (135)
T cd04586 81 RKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR 119 (135)
T ss_pred CCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec
Confidence 568888888899999999999999999999999999998
No 65
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.28 E-value=3.5e-11 Score=104.08 Aligned_cols=91 Identities=16% Similarity=0.257 Sum_probs=77.1
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCC--CCCEEEEEEhhhHhcccccCCcccccccccCCcccCC--CCCHHH
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGN--PKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPA--DMPLYD 310 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd--~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~~--~~~l~d 310 (517)
++..+..++++. ++++.|.+.+++++||+++. .++++|+++.+|++.... ...+++++|.++...+.. ++++.+
T Consensus 3 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~~ 80 (114)
T cd04602 3 DPSVLSPDHTVA-DVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD-SETPLSEVMTPREVLVVAPTGITLEE 80 (114)
T ss_pred CCeEcCCCCCHH-HHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc-cCCCHHHhcCCCceEEECCCCCCHHH
Confidence 567889999999 99999998999999999851 378999999999875432 345688988777777755 999999
Q ss_pred HHHHHHhCCCcEEEEEe
Q 010123 311 ILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 311 aL~~m~~~~~~~apVVD 327 (517)
+++.|++++.+.+||+|
T Consensus 81 ~l~~~~~~~~~~~pVv~ 97 (114)
T cd04602 81 ANEILRESKKGKLPIVN 97 (114)
T ss_pred HHHHHHhcCCCceeEEC
Confidence 99999999999999998
No 66
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.27 E-value=4.5e-11 Score=102.53 Aligned_cols=90 Identities=13% Similarity=0.239 Sum_probs=78.2
Q ss_pred eEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc----CCcccccccccCCcccCCCCCHHHH
Q 010123 236 TFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE----TETPVSAVSIRRMPRVPADMPLYDI 311 (517)
Q Consensus 236 vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~----~~~~V~dim~r~v~~V~~~~~l~da 311 (517)
...+.+++++. ++++.+.+.+++++||++++ ++++|+++.+|++....+ .+.++.++|..++.++++++++.++
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~ 80 (113)
T cd04615 3 PSCVVLNTDIA-RAVAEMYTSGSRALPVVDDK-KRLVGIITRYDVLSYALESEELKDAKVREVMNSPVITIDANDSIAKA 80 (113)
T ss_pred CEEeeCCCcHH-HHHHHHHHcCCceEeEEcCC-CCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccCCceEECCCCcHHHH
Confidence 45788999998 99999999999999999865 889999999999863221 2357888888889999999999999
Q ss_pred HHHHHhCCCcEEEEEe
Q 010123 312 LNEFQKGSSHMAAVVK 327 (517)
Q Consensus 312 L~~m~~~~~~~apVVD 327 (517)
++.|.+.+.+.+||+|
T Consensus 81 ~~~~~~~~~~~~~Vvd 96 (113)
T cd04615 81 RWLMSNNNISRLPVLD 96 (113)
T ss_pred HHHHHHcCCCeeeEEC
Confidence 9999999999999998
No 67
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.27 E-value=1.5e-11 Score=109.10 Aligned_cols=82 Identities=18% Similarity=0.319 Sum_probs=70.8
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccc----ccCCcccccccccCCcccCCCCCHHH
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVR----AETETPVSAVSIRRMPRVPADMPLYD 310 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~----~~~~~~V~dim~r~v~~V~~~~~l~d 310 (517)
++.++++++++. ++++.|.+++++.+||++++ ++++|+++.+|++... ...+.++.++|.++++++.+++++.+
T Consensus 3 ~~~~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~~-~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~ 80 (124)
T cd04608 3 APVTVLPTVTCA-EAIEILKEKGFDQLPVVDES-GKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQFKRVNKNDTLGK 80 (124)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhccceecCCCCCHHH
Confidence 577899999999 99999999999999999865 7899999999998532 12357899999999999999999999
Q ss_pred HHHHHHhC
Q 010123 311 ILNEFQKG 318 (517)
Q Consensus 311 aL~~m~~~ 318 (517)
+.+.|...
T Consensus 81 v~~~~~~~ 88 (124)
T cd04608 81 LSRILETD 88 (124)
T ss_pred HHhhcccC
Confidence 99977543
No 68
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.27 E-value=4.2e-11 Score=103.39 Aligned_cols=90 Identities=16% Similarity=0.218 Sum_probs=78.6
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC--------------CcccccccccCCc
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET--------------ETPVSAVSIRRMP 300 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~--------------~~~V~dim~r~v~ 300 (517)
++.+++.+.++. ++++.|.+.++..+||+++ ++++|+++.+|++...... ..++.++|.++++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (122)
T cd04585 2 NPITVTPDTSLM-EALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPI 78 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCe
Confidence 467789999999 9999999999999999976 8999999999998654221 2457788888899
Q ss_pred ccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 301 RVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 301 ~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
++++++++.++++.|.+.+.+.+||+|
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~ 105 (122)
T cd04585 79 TVSPDASVEEAAELMLERKISGLPVVD 105 (122)
T ss_pred EeCCCCcHHHHHHHHHHcCCCceeEEC
Confidence 999999999999999999999999998
No 69
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.27 E-value=4e-11 Score=102.70 Aligned_cols=91 Identities=14% Similarity=0.207 Sum_probs=78.5
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC----CcccccccccCCcccCCCCCHHH
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET----ETPVSAVSIRRMPRVPADMPLYD 310 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~----~~~V~dim~r~v~~V~~~~~l~d 310 (517)
++.+++++.++. ++++.+.+.+++++||++++ ++++|+++.+++....... ..++.++|.++++++++++++.+
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~ 80 (114)
T cd04604 3 ALPLVSPDTSLK-DALLEMSRKGLGMTAVVDED-GRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNPKTIDPDALAAE 80 (114)
T ss_pred cccccCCCCcHH-HHHHHHHhcCccEEEEEcCC-CCEEEEechHHHHHHHhccCccccCCHHHhhccCCeEECCCCcHHH
Confidence 455788999998 99999988899999999865 7999999999987654321 24688998888899999999999
Q ss_pred HHHHHHhCCCcEEEEEe
Q 010123 311 ILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 311 aL~~m~~~~~~~apVVD 327 (517)
+++.|.+++.+.+||+|
T Consensus 81 ~~~~~~~~~~~~~~Vv~ 97 (114)
T cd04604 81 ALELMEENKITALPVVD 97 (114)
T ss_pred HHHHHHHcCCCEEEEEC
Confidence 99999999999999998
No 70
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.26 E-value=6.3e-11 Score=100.39 Aligned_cols=78 Identities=6% Similarity=0.170 Sum_probs=70.3
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCcccCCCCCHHHHHHH
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNE 314 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~daL~~ 314 (517)
++.++++++++. ++++.|.+.+++.+||++++ ++++|+++.+|+..... ++++++++++.++++.
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~-------------~~~v~~~~~l~~a~~~ 66 (96)
T cd04614 2 NVPTVWEETPLP-VAVRIMELANVKALPVLDDD-GKLSGIITERDLIAKSE-------------VVTATKRTTVSECAQK 66 (96)
T ss_pred CccEeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHhcCCC-------------cEEecCCCCHHHHHHH
Confidence 567899999999 99999999999999999865 89999999999986421 6789999999999999
Q ss_pred HHhCCCcEEEEEe
Q 010123 315 FQKGSSHMAAVVK 327 (517)
Q Consensus 315 m~~~~~~~apVVD 327 (517)
|.+++.+.+||+|
T Consensus 67 m~~~~~~~lpVv~ 79 (96)
T cd04614 67 MKRNRIEQIPIIN 79 (96)
T ss_pred HHHhCCCeeeEEC
Confidence 9999999999998
No 71
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.26 E-value=7e-11 Score=101.18 Aligned_cols=90 Identities=16% Similarity=0.241 Sum_probs=78.2
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc-----cCCcccccccccCCcccCCCCCHH
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA-----ETETPVSAVSIRRMPRVPADMPLY 309 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~-----~~~~~V~dim~r~v~~V~~~~~l~ 309 (517)
++..+++++++. ++++.|.+.+++.+||+++ ++++|+++.+|++.... ....++.++|.++++++++++++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~ 78 (112)
T cd04802 2 NVITVDPDTTVY-EAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLN 78 (112)
T ss_pred CcEEECCCCCHH-HHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHH
Confidence 466789999999 9999999999999999986 48999999999986431 124568888878888999999999
Q ss_pred HHHHHHHhCCCcEEEEEe
Q 010123 310 DILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 310 daL~~m~~~~~~~apVVD 327 (517)
++++.|.+++.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~~~Vv~ 96 (112)
T cd04802 79 EAAKLMAKHGIKRLPVVD 96 (112)
T ss_pred HHHHHHHHcCCCeeEEee
Confidence 999999999999999998
No 72
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.26 E-value=4.9e-11 Score=102.82 Aligned_cols=90 Identities=13% Similarity=0.313 Sum_probs=75.1
Q ss_pred ceEEecCCCChhHHHHHHHHHcC-CcEEEEEeCCCCCEEEEEEhhhHhccccc----CCcccccccccCCcccCCC--CC
Q 010123 235 STFSLDVNSKLDWEAIGKILARG-HSRVPIYSGNPKNIIGLLLVKSLLTVRAE----TETPVSAVSIRRMPRVPAD--MP 307 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g-~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~----~~~~V~dim~r~v~~V~~~--~~ 307 (517)
++..++.+.++. ++++.+.+++ +..+||.++ ++++|+|+.+|++....+ .+.++.++|.+++++++++ ++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~ 78 (115)
T cd04620 2 HPLTVTPDTPVA-DAIALMSQQGDSSCVLVVEK--GRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQPVVTLQESEIQD 78 (115)
T ss_pred CCeEeCCCCcHH-HHHHHHHhcCCCceEEEcCC--CcEEEEEeHHHHHHHHhcCCCccccCHHHhcCCCcEEEecccccC
Confidence 456788999998 9999998888 667777763 789999999999864322 1357888888888889887 78
Q ss_pred HHHHHHHHHhCCCcEEEEEe
Q 010123 308 LYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 308 l~daL~~m~~~~~~~apVVD 327 (517)
+.++++.|.+++.+.+||+|
T Consensus 79 l~~a~~~~~~~~~~~~pVvd 98 (115)
T cd04620 79 IFTALSLFRQHQIRHLPVLD 98 (115)
T ss_pred HHHHHHHHHHhCCceEEEEc
Confidence 99999999999999999998
No 73
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.26 E-value=5.1e-11 Score=102.02 Aligned_cols=90 Identities=18% Similarity=0.244 Sum_probs=77.5
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc----cC-CcccccccccCCcccCCCCCHH
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA----ET-ETPVSAVSIRRMPRVPADMPLY 309 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~----~~-~~~V~dim~r~v~~V~~~~~l~ 309 (517)
++..+..+.++. ++++.|.+++++++||+++ ++++|+|+.+|++.... .. ..++.++|.++++++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~ 78 (113)
T cd04587 2 KPATVSPTTTVQ-EAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVL 78 (113)
T ss_pred CCeEeCCCCCHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHH
Confidence 567789999999 9999999999999999975 89999999999874221 11 2578888888888999999999
Q ss_pred HHHHHHHhCCCcEEEEEe
Q 010123 310 DILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 310 daL~~m~~~~~~~apVVD 327 (517)
++++.|.+++.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~l~Vv~ 96 (113)
T cd04587 79 EALHLMVQGKFRHLPVVD 96 (113)
T ss_pred HHHHHHHHcCCCcccEEC
Confidence 999999999999999998
No 74
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.25 E-value=5.2e-11 Score=102.43 Aligned_cols=86 Identities=14% Similarity=0.149 Sum_probs=75.6
Q ss_pred cceEEecCCCChhHHHHHHHHHcCCcEEEEEeCC--CCCEEEEEEhhhHhcccccCCcccccccccCCcccCCCCCHHHH
Q 010123 234 ESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGN--PKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDI 311 (517)
Q Consensus 234 ~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd--~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~da 311 (517)
.++..+++++++. ++.+.+.+.+++++||+++. .++++|+|+.+|+...... +|.++++++++++++.++
T Consensus 2 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~-------~m~~~~~~v~~~~~l~~~ 73 (105)
T cd04591 2 PLVVLLPEGMTVE-DLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN-------YIDPSPFTVSPRTSLEKV 73 (105)
T ss_pred CceEEecccccHH-HHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH-------hccCCCceECCCCcHHHH
Confidence 4677899999999 99999999999999999762 3789999999999865432 677888899999999999
Q ss_pred HHHHHhCCCcEEEEEe
Q 010123 312 LNEFQKGSSHMAAVVK 327 (517)
Q Consensus 312 L~~m~~~~~~~apVVD 327 (517)
++.|++++.+.+||++
T Consensus 74 ~~~~~~~~~~~~pVv~ 89 (105)
T cd04591 74 HQLFRKLGLRHLLVVD 89 (105)
T ss_pred HHHHHHcCCCEEEEEE
Confidence 9999999999999997
No 75
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.25 E-value=1e-10 Score=127.01 Aligned_cols=99 Identities=17% Similarity=0.243 Sum_probs=88.3
Q ss_pred cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCcc
Q 010123 222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPR 301 (517)
Q Consensus 222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~ 301 (517)
...++.++|++ +++++.+++++. ++++.|.+++++.+||+++ ++++|+|+.+|+.... ...+++++|.+++++
T Consensus 86 ~~VKv~eim~~--~pvtv~p~~tI~-eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~~~~--~~~~V~dIMt~~lit 158 (475)
T TIGR01303 86 AFVKSRDLVLD--TPITLAPHDTVS-DAMALIHKRAHGAAVVILE--DRPVGLVTDSDLLGVD--RFTQVRDIMSTDLVT 158 (475)
T ss_pred hhcchhhcccc--CCeEECCCCCHH-HHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhhcCC--CCCCHHHHccCCceE
Confidence 35678889984 778999999999 9999999999999999875 6899999999997543 346799999999999
Q ss_pred cCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 302 VPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 302 V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
+++++++.++++.|.+++.+.+||+|
T Consensus 159 v~~~~sL~eAl~lM~~~~i~~LPVVD 184 (475)
T TIGR01303 159 APADTEPRKAFDLLEHAPRDVAPLVD 184 (475)
T ss_pred eCCCCcHHHHHHHHHHcCCCEEEEEc
Confidence 99999999999999999999999999
No 76
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.25 E-value=5e-11 Score=103.82 Aligned_cols=90 Identities=12% Similarity=0.208 Sum_probs=78.3
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc--------------CCcccccccccCCc
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE--------------TETPVSAVSIRRMP 300 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~--------------~~~~V~dim~r~v~ 300 (517)
++.+++++.++. ++.+.+.+.+++++||+++ ++++|+++.+|+...... ...++.++|.++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (122)
T cd04637 2 RVVTVEMDDRLE-EVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPI 78 (122)
T ss_pred CceEeCCCCCHH-HHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCe
Confidence 567899999999 9999999999999999985 799999999999754211 12467888888899
Q ss_pred ccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 301 RVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 301 ~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
++++++++.++++.|.+++...+||+|
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~vv~ 105 (122)
T cd04637 79 TVSPDTPVDEASKLLLENSISCLPVVD 105 (122)
T ss_pred eeCCCCcHHHHHHHHHHcCCCeEeEEC
Confidence 999999999999999999999999998
No 77
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.25 E-value=8.4e-11 Score=128.58 Aligned_cols=144 Identities=13% Similarity=0.109 Sum_probs=105.5
Q ss_pred cccHHHHHHHHHhhhhhcccCCCCC-hhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEE
Q 010123 184 LFRRAQLKALVSIHSQEAGKGGELT-HDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVP 262 (517)
Q Consensus 184 ~~s~eEL~~lv~~~~~e~~~~G~L~-~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~P 262 (517)
.+++.++-..+...+--+--....+ ++.++.++.+.++ +..|+ ++++++++++++. ++++.|.+++++.+|
T Consensus 64 ~vt~~~lA~Ama~aGGiGfI~~~as~E~q~~~Irkvk~~-----~~gmi--~dpvtV~pd~tV~-dA~~lm~~~~~~~lp 135 (505)
T PLN02274 64 TVTESDMAIAMAALGGIGIVHYNNTAEEQAAIVRKAKSR-----RVGFV--SDPVVKSPSSTIS-SLDELKASRGFSSVC 135 (505)
T ss_pred ccchHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHhhcc-----ccccc--CCCeeeCCCCcHH-HHHHHHHhcCCceEE
Confidence 4566676665542210000000123 3345677777654 22266 3788999999999 999999999999999
Q ss_pred EEeCC--CCCEEEEEEhhhHhcccccCCcccccccccC--CcccCCCCCHHHHHHHHHhCCCcEEEEEeeCCCCcccc
Q 010123 263 IYSGN--PKNIIGLLLVKSLLTVRAETETPVSAVSIRR--MPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKKSQ 336 (517)
Q Consensus 263 V~ddd--~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~--v~~V~~~~~l~daL~~m~~~~~~~apVVDEyG~~~G~~ 336 (517)
|++++ .++++|+|+.+|+.... ..+.++.++|.++ ++++++++++.++++.|.+++.+.+||+|+.|...|++
T Consensus 136 VvD~~~~~GklvGIVT~~DL~~v~-~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvI 212 (505)
T PLN02274 136 VTETGTMGSKLLGYVTKRDWDFVN-DRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLV 212 (505)
T ss_pred EEeCCCcCCeEEEEEEHHHHhhcc-ccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEE
Confidence 99863 36899999999997543 3467899999766 77999999999999999999999999999655555554
No 78
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.25 E-value=8.9e-11 Score=100.53 Aligned_cols=90 Identities=16% Similarity=0.241 Sum_probs=77.4
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcc-ccc----CCcccccccccCCcccCCCCCHH
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTV-RAE----TETPVSAVSIRRMPRVPADMPLY 309 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~-~~~----~~~~V~dim~r~v~~V~~~~~l~ 309 (517)
++.++++++++. ++.+.|.+.+++.+||+++ ++++|+++.+|++.. ... ...++.++|.+.+.++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 78 (113)
T cd04622 2 DVVTVSPDDTIR-EAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVD 78 (113)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHH
Confidence 567889999999 9999999999999999986 899999999998632 111 12348888888899999999999
Q ss_pred HHHHHHHhCCCcEEEEEe
Q 010123 310 DILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 310 daL~~m~~~~~~~apVVD 327 (517)
++++.|.+.+.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~~~V~~ 96 (113)
T cd04622 79 EAARLMREHQVRRLPVVD 96 (113)
T ss_pred HHHHHHHHcCCCeeeEEC
Confidence 999999999999999998
No 79
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.24 E-value=4.9e-11 Score=128.67 Aligned_cols=100 Identities=19% Similarity=0.339 Sum_probs=85.0
Q ss_pred ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc----CCcccccccc
Q 010123 221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE----TETPVSAVSI 296 (517)
Q Consensus 221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~----~~~~V~dim~ 296 (517)
|...+|+++|.+ ++.++.+++++. ++++.|.+++++.+||++++ ++++|+|+.+|++....+ .+.++.++|.
T Consensus 332 l~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~im~ 407 (454)
T TIGR01137 332 LKNATVKDLHLP--APVTVHPTETVG-DAIEILREYGFDQLPVVTEA-GKVLGSVTLRELLSALFAGKANPDDAVSKVMS 407 (454)
T ss_pred hccCCHHHhCcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhccCCCcCCCHHHhcC
Confidence 788999999985 788999999999 99999999999999999865 789999999999864322 2357899998
Q ss_pred cCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 297 RRMPRVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 297 r~v~~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
+++++|++++++.++++.|.+++ . +||+
T Consensus 408 ~~~~~v~~~~~l~~a~~~~~~~~--~-~vV~ 435 (454)
T TIGR01137 408 KKFIQIGEGEKLSDLSKFLEKNS--S-AIVT 435 (454)
T ss_pred CCCeEECCcCcHHHHHHHHHHCC--e-eEEE
Confidence 88889999999999999998864 3 4455
No 80
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=1.1e-10 Score=99.89 Aligned_cols=90 Identities=14% Similarity=0.242 Sum_probs=76.8
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc-----CCcccccccccCCcccCCCCCHH
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE-----TETPVSAVSIRRMPRVPADMPLY 309 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~-----~~~~V~dim~r~v~~V~~~~~l~ 309 (517)
++..+++++++. ++++.+.+++++.++|.+ + ++++|+++.+|++....+ ...++.++|..+++++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~-~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 78 (112)
T cd04625 2 TIYTVAPETLLS-EAVATMAEQDLGSLVVME-R-GELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSID 78 (112)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCeEEEee-C-CEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHH
Confidence 567889999999 999999888888887765 3 799999999999865322 23578899877888999999999
Q ss_pred HHHHHHHhCCCcEEEEEe
Q 010123 310 DILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 310 daL~~m~~~~~~~apVVD 327 (517)
++++.|.+++...+||+|
T Consensus 79 ~a~~~m~~~~~~~l~Vv~ 96 (112)
T cd04625 79 EVRRLMVERHLRYLPVLD 96 (112)
T ss_pred HHHHHHHHcCCCeeeEEE
Confidence 999999999999999998
No 81
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.23 E-value=5e-11 Score=130.14 Aligned_cols=99 Identities=13% Similarity=0.162 Sum_probs=85.0
Q ss_pred EEecCCCChhHHHHHHHHHcCCcEEEEEeCC--CCCEEEEEEhhhHhcccccCCccccccccc--CCcccCCCCCHHHHH
Q 010123 237 FSLDVNSKLDWEAIGKILARGHSRVPIYSGN--PKNIIGLLLVKSLLTVRAETETPVSAVSIR--RMPRVPADMPLYDIL 312 (517)
Q Consensus 237 v~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd--~d~iVGiV~~kDLl~~~~~~~~~V~dim~r--~v~~V~~~~~l~daL 312 (517)
.++++++++. ++++.|.+++++.+||++++ .++++|+|+.+|+.......+.+++++|.+ +++++++++++.+++
T Consensus 108 ~tV~pd~tl~-eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~~~~~~V~dIMt~~~~~itv~~d~~l~eAl 186 (502)
T PRK07107 108 SNLTPDNTLA-DVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMSLDTKVKDFMTPFEKLVTANEGTTLKEAN 186 (502)
T ss_pred CEeCCCCcHH-HHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccccCCCCCHHHHhCCCCCeEEECCCCcHHHHH
Confidence 4889999999 99999999999999999862 378999999999975433346789999975 678899999999999
Q ss_pred HHHHhCCCcEEEEEeeCCCCcccc
Q 010123 313 NEFQKGSSHMAAVVKVKGKSKKSQ 336 (517)
Q Consensus 313 ~~m~~~~~~~apVVDEyG~~~G~~ 336 (517)
+.|.+++...+||+|+.|...|++
T Consensus 187 ~lM~e~~i~~LPVVD~~g~LvGII 210 (502)
T PRK07107 187 DIIWDHKLNTLPIVDKNGNLVYLV 210 (502)
T ss_pred HHHHHcCCCEEEEEcCCCeEEEEE
Confidence 999999999999999666666665
No 82
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.22 E-value=1.1e-10 Score=101.13 Aligned_cols=91 Identities=11% Similarity=0.171 Sum_probs=79.0
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc-------------cCCcccccccccCCcc
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA-------------ETETPVSAVSIRRMPR 301 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~-------------~~~~~V~dim~r~v~~ 301 (517)
++.+++.++++. ++++.+.+.+++++||++++ ++++|+|+.+|+..... ....++.++|..++++
T Consensus 2 ~~~~~~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 79 (121)
T cd04584 2 DVVTITPTTTIA-EALELMREHKIRHLPVVDEE-GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVIT 79 (121)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeE
Confidence 456789999999 99999999999999999875 89999999999875421 1235688888888999
Q ss_pred cCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 302 VPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 302 V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
+++++++.++++.|.+++.+.+||+|
T Consensus 80 i~~~~~l~~~~~~~~~~~~~~~~V~~ 105 (121)
T cd04584 80 VHPLDTVEEAALLMREHRIGCLPVVE 105 (121)
T ss_pred ECCCCcHHHHHHHHHHcCCCeEEEee
Confidence 99999999999999999999999998
No 83
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.21 E-value=1.4e-10 Score=98.41 Aligned_cols=88 Identities=23% Similarity=0.391 Sum_probs=73.9
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC----CcccccccccCCcccCCCCCHHH
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET----ETPVSAVSIRRMPRVPADMPLYD 310 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~----~~~V~dim~r~v~~V~~~~~l~d 310 (517)
++.+++.++++. ++.+.|.+++++++||+++ ++++|+++.+|+.....+. ..++.++|.++++++++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~ 78 (110)
T cd04609 2 DVVSVAPDDTVS-QAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAKFSLPVREVMGEPLPTVDPDAPIEE 78 (110)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhccccccCcCHHHHhcCCCceeCCCCcHHH
Confidence 456789999999 9999999999999999985 7899999999998753321 35688888888889999999999
Q ss_pred HHHHHHhCCCcEEEEEe
Q 010123 311 ILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 311 aL~~m~~~~~~~apVVD 327 (517)
+++.|++ .. .+||+|
T Consensus 79 ~~~~~~~-~~-~~~vv~ 93 (110)
T cd04609 79 LSELLDR-GN-VAVVVD 93 (110)
T ss_pred HHHHHHh-CC-ceeEEe
Confidence 9999998 33 478888
No 84
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.21 E-value=1.1e-10 Score=101.31 Aligned_cols=90 Identities=18% Similarity=0.317 Sum_probs=78.3
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc--------------CCcccccccccCCc
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE--------------TETPVSAVSIRRMP 300 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~--------------~~~~V~dim~r~v~ 300 (517)
+++.+++++++. ++.+.|.+.+++++||+++ ++++|+++.+|++..... ...++.++|.++++
T Consensus 2 ~~~~i~~~~~~~-~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (121)
T cd04633 2 PVITVSPDDRVS-HARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVI 78 (121)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCce
Confidence 466789999999 9999999999999999985 899999999998764221 13467788888899
Q ss_pred ccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 301 RVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 301 ~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
++++++++.++++.|.+.+.+.+||+|
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~ 105 (121)
T cd04633 79 TIEPDTSVSDVASLMLENNIGGLPVVD 105 (121)
T ss_pred EECCCCcHHHHHHHHHHcCCCcccEEE
Confidence 999999999999999999999999999
No 85
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.20 E-value=1.2e-10 Score=127.10 Aligned_cols=144 Identities=11% Similarity=0.149 Sum_probs=108.9
Q ss_pred cccHHHHHHHHHhhhhhcccCCCCCh-hHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEE
Q 010123 184 LFRRAQLKALVSIHSQEAGKGGELTH-DETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVP 262 (517)
Q Consensus 184 ~~s~eEL~~lv~~~~~e~~~~G~L~~-eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~P 262 (517)
.+|+.++-..+..++.-+--.+.++. ++.+.++++.+ +++.|.+ +++++++++++. ++++.|.+++++.+|
T Consensus 60 ~vt~~~ma~a~a~~GglGvi~~~~~~e~~~~~v~kvk~-----~e~g~i~--dpvtv~pd~tv~-eA~~lm~~~~~s~vp 131 (495)
T PTZ00314 60 TVTEHKMAIAMALMGGIGVIHNNCSIEEQVEEVRKVKR-----FENGFIM--DPYVLSPNHTVA-DVLEIKEKKGFSSIL 131 (495)
T ss_pred ccccHHHHHHHHHCCCeEEecCCCCHHHHHHHHhhccc-----ccccccc--CCeecCCCCCHH-HHHHHHHHcCCcEEE
Confidence 45666766655532211001112233 34556666643 4457763 678999999999 999999999999999
Q ss_pred EEeCC--CCCEEEEEEhhhHhcccccCCccccccccc--CCcccCCCCCHHHHHHHHHhCCCcEEEEEeeCCCCcccc
Q 010123 263 IYSGN--PKNIIGLLLVKSLLTVRAETETPVSAVSIR--RMPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKKSQ 336 (517)
Q Consensus 263 V~ddd--~d~iVGiV~~kDLl~~~~~~~~~V~dim~r--~v~~V~~~~~l~daL~~m~~~~~~~apVVDEyG~~~G~~ 336 (517)
|++++ .++++|+|+.+|+.... ..+.+++++|.+ +++++++++++.++++.|.+++.+.+||+|+.|...|++
T Consensus 132 Vvd~~~~~gkLvGIVt~~DL~~~~-~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGII 208 (495)
T PTZ00314 132 ITVDGKVGGKLLGIVTSRDIDFVK-DKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALV 208 (495)
T ss_pred EEeCCccCCeEEEEEEHHHHhhcc-cCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEE
Confidence 99863 36899999999997543 345789999876 788999999999999999999999999999888888887
No 86
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.19 E-value=2.9e-10 Score=95.42 Aligned_cols=91 Identities=21% Similarity=0.320 Sum_probs=78.1
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCC----cccccccccCCcccCCCCCHHH
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETE----TPVSAVSIRRMPRVPADMPLYD 310 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~----~~V~dim~r~v~~V~~~~~l~d 310 (517)
++..++.+.++. ++++.+.+++++++||++++ ++++|+++.+|++....... ..+.++|..++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (113)
T cd02205 2 DVVTVSPDDTVA-EALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEE 79 (113)
T ss_pred CceEecCCCCHH-HHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhccCCccccHHHHhcCCceecCCCcCHHH
Confidence 466789999999 99999999999999999875 79999999999987553321 1156678888999999999999
Q ss_pred HHHHHHhCCCcEEEEEe
Q 010123 311 ILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 311 aL~~m~~~~~~~apVVD 327 (517)
+++.|.+.+.+.+||+|
T Consensus 80 ~~~~~~~~~~~~~~V~~ 96 (113)
T cd02205 80 AAELMLEHGIRRLPVVD 96 (113)
T ss_pred HHHHHHHcCCCEEEEEc
Confidence 99999999999999998
No 87
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.16 E-value=2.7e-10 Score=103.28 Aligned_cols=90 Identities=12% Similarity=0.261 Sum_probs=78.1
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc----------------------------
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE---------------------------- 286 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~---------------------------- 286 (517)
++++++.++++. ++++.|.+.+++.+||+++ ++++|+++.+|++.....
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (143)
T cd04634 2 NPITCNADDTIS-DAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEE 78 (143)
T ss_pred CcEEecCCCCHH-HHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHH
Confidence 567899999999 9999999999999999985 789999999998754211
Q ss_pred --------CCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 287 --------TETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 287 --------~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
...++.++|.++++++++++++.++++.|++.+.+.+||+|
T Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~ 127 (143)
T cd04634 79 TKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVE 127 (143)
T ss_pred HHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE
Confidence 13457778888899999999999999999999999999998
No 88
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.15 E-value=1.6e-10 Score=115.85 Aligned_cols=102 Identities=11% Similarity=0.102 Sum_probs=89.7
Q ss_pred cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc---CCcccccccccCCc
Q 010123 224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE---TETPVSAVSIRRMP 300 (517)
Q Consensus 224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~---~~~~V~dim~r~v~ 300 (517)
.+|+++|.+. ++..+++++++. ++++.|.+.+++.+||++++ ++++|+|+.+|++..... .+.+++++|.++++
T Consensus 155 ~~v~~im~~~-~~~~v~~~~~v~-~a~~~~~~~~~~~~~Vvd~~-g~~~Givt~~dl~~~~~~~~~~~~~v~~im~~~~~ 231 (268)
T TIGR00393 155 VKVKDLMQTT-DLPLIAPTTSFK-DALLEMSEKRLGSAIVCDEN-NQLVGVFTDGDLRRALLGGGSLKSEVRDFMTLGPK 231 (268)
T ss_pred hhHHHHhCCC-CCCcCCCCCcHH-HHHHHHhhcCCcEEEEEeCC-CCEEEEEEcHHHHHHHhcCCcccCcHHHhCCCCCe
Confidence 6899999852 278899999999 99999999999999999865 899999999999865321 24679999989999
Q ss_pred ccCCCCCHHHHHHHHHhCCCcEEEEEee
Q 010123 301 RVPADMPLYDILNEFQKGSSHMAAVVKV 328 (517)
Q Consensus 301 ~V~~~~~l~daL~~m~~~~~~~apVVDE 328 (517)
++++++++.++++.|.+++.+.+||+|+
T Consensus 232 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~ 259 (268)
T TIGR00393 232 TFKLDALLLEALEFLERRKITSLVVVDD 259 (268)
T ss_pred EECCCCcHHHHHHHHHHcCCcEEEEECC
Confidence 9999999999999999999999999994
No 89
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.15 E-value=3.4e-10 Score=97.95 Aligned_cols=90 Identities=17% Similarity=0.232 Sum_probs=74.6
Q ss_pred ceEEecCCCChhHHHHHHHHHcC-CcEEEEEeCCCCCEEEEEEhhhHhccccc-------CCcccccccccCCcccCCCC
Q 010123 235 STFSLDVNSKLDWEAIGKILARG-HSRVPIYSGNPKNIIGLLLVKSLLTVRAE-------TETPVSAVSIRRMPRVPADM 306 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g-~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~-------~~~~V~dim~r~v~~V~~~~ 306 (517)
++.++++++++. ++++.+...+ ++.+||+++ ++++|+|+.+|++..... .+.++.++|..+++++++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~ 78 (119)
T cd04598 2 PAPTVSPDTTVN-DVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADT 78 (119)
T ss_pred CcCccCCCCcHH-HHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCCcEEecCCC
Confidence 455788999999 9999998877 899999986 899999999999754321 24578899888888999999
Q ss_pred CHHHHHHHHHhCCCc---EEEEEe
Q 010123 307 PLYDILNEFQKGSSH---MAAVVK 327 (517)
Q Consensus 307 ~l~daL~~m~~~~~~---~apVVD 327 (517)
++.+++..|.+++.. ..+|+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~vv~ 102 (119)
T cd04598 79 PLEEVSRLATGRDSQNLYDGFIVT 102 (119)
T ss_pred CHHHHHHHHHcCCcccccccEEEe
Confidence 999999999988753 346777
No 90
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.13 E-value=6.8e-10 Score=95.45 Aligned_cols=96 Identities=21% Similarity=0.355 Sum_probs=83.9
Q ss_pred ccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCC-c--ccccccccCCcccC
Q 010123 227 EEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETE-T--PVSAVSIRRMPRVP 303 (517)
Q Consensus 227 ~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~-~--~V~dim~r~v~~V~ 303 (517)
.++|. .+++++.++.++. ++...|.+++++++||.++ ++++|+++.+|++....... . ++.++|.++++++.
T Consensus 2 ~~~~~--~~~~~v~~~~~~~-~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~~~~v~~v~~~~~~~~~ 76 (117)
T COG0517 2 KDIMT--KDVITVKPDTSVR-DALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKRLLPVKEVMTKPVVTVD 76 (117)
T ss_pred ccccc--CCCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCccccHHHhccCCcEEEC
Confidence 34555 5788999999999 9999999999999999975 37999999999998765432 2 48889888999999
Q ss_pred CCCCHHHHHHHHHh-CCCcEEEEEe
Q 010123 304 ADMPLYDILNEFQK-GSSHMAAVVK 327 (517)
Q Consensus 304 ~~~~l~daL~~m~~-~~~~~apVVD 327 (517)
++.++.++++.|.+ ++.+.+||+|
T Consensus 77 ~~~~~~~~~~~m~~~~~~~~lpVv~ 101 (117)
T COG0517 77 PDTPLEEALELMVERHKIRRLPVVD 101 (117)
T ss_pred CCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 99999999999999 7999999999
No 91
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.01 E-value=8.5e-10 Score=118.72 Aligned_cols=105 Identities=14% Similarity=0.174 Sum_probs=91.2
Q ss_pred hcccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccc----ccCCcccccc
Q 010123 219 LDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVR----AETETPVSAV 294 (517)
Q Consensus 219 l~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~----~~~~~~V~di 294 (517)
-++--.+++++|+. ..+++++..++. ++.++|.+.|.|.+.|++++ +...|||+.+|+.... .....+|+++
T Consensus 144 ~e~~~trv~~~~~~--~~~~v~~~~~i~-~aa~km~~~gv~s~v~l~~~-~~~~GIvT~~dl~~~v~~~g~~~~~~V~ev 219 (610)
T COG2905 144 SEFILTRVGEVKTL--PAVTVSPQASIQ-DAARKMKDEGVSSLVVLDDS-GPLLGIVTRKDLRSRVIADGRSKTQKVSEV 219 (610)
T ss_pred chHHHHHHHHHhcC--CCcccCccCcHH-HHHHHHHhcCCCeEEEEcCC-CCccceeehHHHHHHHHhcCCCcccchhhh
Confidence 33444568888984 678999999999 99999999999988888765 8899999999997642 2235789999
Q ss_pred cccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 295 SIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 295 m~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
|+.|+.+|...+.+.+|+-.|.++++|.+||.+
T Consensus 220 mT~p~~svd~~~~~feAml~m~r~~I~hl~V~e 252 (610)
T COG2905 220 MTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE 252 (610)
T ss_pred hccCceeecCcchHHHHHHHHHHhCCceeeeec
Confidence 999999999999999999999999999999987
No 92
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.94 E-value=3.1e-09 Score=96.14 Aligned_cols=94 Identities=18% Similarity=0.158 Sum_probs=77.8
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCc---c------------ccccc----
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETET---P------------VSAVS---- 295 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~---~------------V~dim---- 295 (517)
++.++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|++........ . +.++|
T Consensus 2 ~~~~v~~~~~l~-ea~~~m~~~~~~~~~VvD~~-g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 79 (133)
T cd04592 2 KYIKVSPTTTLK-EALNLMLDEKQSCVLVVDSD-DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI 79 (133)
T ss_pred CceEECCCCCHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhh
Confidence 678899999999 99999999999999999865 899999999999865432111 1 23354
Q ss_pred -----ccCCcccCCCCCHHHHHHHHHhCCCcEEEEEeeCC
Q 010123 296 -----IRRMPRVPADMPLYDILNEFQKGSSHMAAVVKVKG 330 (517)
Q Consensus 296 -----~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDEyG 330 (517)
.++++++.+++++.++++.|.+++.+.+||+|+.+
T Consensus 80 ~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~ 119 (133)
T cd04592 80 SYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV 119 (133)
T ss_pred hhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence 36788999999999999999999999999999543
No 93
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.84 E-value=1.3e-08 Score=112.74 Aligned_cols=56 Identities=13% Similarity=0.252 Sum_probs=50.5
Q ss_pred ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
..+|+|+|++ ++.++++++++. ++++.|.+++++++||++++ ++++|+|+.+|+..
T Consensus 67 ~~~V~dim~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~ 122 (546)
T PRK14869 67 KPQVRDLEID--KPVTVSPDTSLK-EAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLAR 122 (546)
T ss_pred CCcHHHhcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHH
Confidence 4689999984 788999999999 99999999999999999865 89999999999864
No 94
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.62 E-value=8e-08 Score=73.39 Aligned_cols=37 Identities=22% Similarity=0.173 Sum_probs=35.1
Q ss_pred cccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 291 VSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 291 V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
++++|.++++++++++++.++++.|.+++.+.+||+|
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d 37 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVD 37 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEES
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEe
Confidence 4678989999999999999999999999999999999
No 95
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.51 E-value=1.6e-07 Score=71.66 Aligned_cols=55 Identities=24% Similarity=0.483 Sum_probs=50.6
Q ss_pred cccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccc
Q 010123 226 AEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVR 284 (517)
Q Consensus 226 V~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~ 284 (517)
|+++|++ +++++++++++. ++++.|.+++++++||++++ ++++|+++.+|++.+.
T Consensus 1 v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~is~~dl~~~l 55 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLE-EALEIMRKNGISRLPVVDED-GKLVGIISRSDLLKAL 55 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHH-HHHHHHHHHTSSEEEEESTT-SBEEEEEEHHHHHHHH
T ss_pred CeECCcC--CCEEEcCcCcHH-HHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHhhh
Confidence 6789996 899999999999 99999999999999999876 8999999999998754
No 96
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.41 E-value=2.7e-06 Score=91.03 Aligned_cols=100 Identities=15% Similarity=0.154 Sum_probs=79.2
Q ss_pred cccccccccccc-eEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCccc
Q 010123 224 KTAEEAMTPIES-TFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRV 302 (517)
Q Consensus 224 ~tV~dIMtPr~~-vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V 302 (517)
.++.++|.+... .+...++.+.. ++++.|...+.+.+.|++++ ++++|+|+.+++.....+ ...+.+.+.....+|
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 350 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPR-SALKLLQDEDREYGYVIERG-NKFVGAVSIDSLKTALTQ-QQGLDAALIDAPLAV 350 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHH-HHHHHHHhcCCceEEEEcCC-CcEEEEEeHHHHHhhhhc-CCchhhhhccCCcee
Confidence 567888853211 12334556677 89999999999999999876 899999999999765443 346777777778899
Q ss_pred CCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 303 PADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 303 ~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
++++++.+++..|.+.... +||||
T Consensus 351 ~~~~~~~~~~~~~~~~~~~-~~v~~ 374 (400)
T PRK10070 351 DAQTPLSELLSHVGQAPCA-VPVVD 374 (400)
T ss_pred CCCCCHHHHHHHHHhCCCc-EEEEC
Confidence 9999999999999997777 89998
No 97
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.35 E-value=2.5e-06 Score=90.63 Aligned_cols=91 Identities=15% Similarity=0.187 Sum_probs=75.2
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCC-----cc-cccc------cccCCccc
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETE-----TP-VSAV------SIRRMPRV 302 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~-----~~-V~di------m~r~v~~V 302 (517)
++..+..++++. ++++.|...++|.+||++.+ ++.+|..+..|+.....+.. .. ++.. -..+++++
T Consensus 238 ~i~~i~~~~~v~-~al~~m~~~~is~lpvV~~~-g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc 315 (381)
T KOG1764|consen 238 NIASISEDTPVI-EALKIMSERRISALPVVDEN-GKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTC 315 (381)
T ss_pred hheeecCCCcHH-HHHHHHHhcCcCcceEEcCC-CceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEE
Confidence 588999999999 99999999999999999876 77799999999986544431 11 2221 12346789
Q ss_pred CCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 303 PADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 303 ~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
.++.++..++..|..+++|.+.|||
T Consensus 316 ~~~ssL~~vi~~lv~~~vHRl~VVd 340 (381)
T KOG1764|consen 316 RPTSTLAEVIDKLVAHRVHRLWVVD 340 (381)
T ss_pred eecchHHHHHHHHHhcCceEEEEEc
Confidence 9999999999999999999999999
No 98
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.28 E-value=1.1e-05 Score=85.26 Aligned_cols=87 Identities=15% Similarity=0.193 Sum_probs=73.1
Q ss_pred EEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCcccCCCCCHHHHHHHHH
Q 010123 237 FSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQ 316 (517)
Q Consensus 237 v~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~daL~~m~ 316 (517)
....++.+.. ++++.+...+.....|++++ +++.|+|..+++..+... ...+.+.+....++|++++++.+++..|.
T Consensus 253 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (363)
T TIGR01186 253 ITKTADKGPR-SALQLMRDERVDSLYVVDRQ-NKLVGVVDVESIKQARKK-AQGLQDVLIDDIYTVDAGTLLRETVRKVL 329 (363)
T ss_pred eeecCCCCHH-HHHHHHHhcCCceEEEEcCC-CCEEEEEeHHHHHHHhhc-CCchhhhhccCCceECCCCcHHHHHHHHH
Confidence 3455666777 89999999999999999865 799999999998866543 34577777788889999999999999999
Q ss_pred hCCCcEEEEEe
Q 010123 317 KGSSHMAAVVK 327 (517)
Q Consensus 317 ~~~~~~apVVD 327 (517)
+.+.. +||+|
T Consensus 330 ~~~~~-~~v~~ 339 (363)
T TIGR01186 330 KAGIK-VPVVD 339 (363)
T ss_pred hCCCC-EEEEC
Confidence 99999 99999
No 99
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.19 E-value=2.3e-06 Score=93.35 Aligned_cols=104 Identities=20% Similarity=0.253 Sum_probs=83.8
Q ss_pred ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCC----CEEEEEEhhhHhccccc----------
Q 010123 221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPK----NIIGLLLVKSLLTVRAE---------- 286 (517)
Q Consensus 221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d----~iVGiV~~kDLl~~~~~---------- 286 (517)
+++.+|+|+|.+ ++++++.-..+. .+.+.++.+.|..+||+|+..+ ++.|+|....++.....
T Consensus 579 mr~L~a~ev~~~--pvi~l~~~ekV~-~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~ 655 (762)
T KOG0474|consen 579 MRNLTAGEVMSK--PVICLNRVEKVA-VIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRST 655 (762)
T ss_pred hhhhhHhhhccC--CeEEEechhhHH-HHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccc
Confidence 467789999995 899999999998 8999999999999999985433 67888876666531100
Q ss_pred ----------------C----------------CcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 287 ----------------T----------------ETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 287 ----------------~----------------~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
. -.++..+|...+++|+++|++..++..|++-+.+.+.||+
T Consensus 656 ~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~ 728 (762)
T KOG0474|consen 656 FDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVP 728 (762)
T ss_pred cCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEec
Confidence 0 1244556667788999999999999999999999999998
No 100
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.07 E-value=9.9e-06 Score=84.84 Aligned_cols=148 Identities=11% Similarity=0.119 Sum_probs=112.4
Q ss_pred ccccHHHHHHHHHhhhhhcccCCCC-ChhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEE
Q 010123 183 ALFRRAQLKALVSIHSQEAGKGGEL-THDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRV 261 (517)
Q Consensus 183 ~~~s~eEL~~lv~~~~~e~~~~G~L-~~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~ 261 (517)
..+++.|....+.+++.-+--...- .+++..+++++-.|..-- ++ +.+.++++.++. ++++.-..++|+.+
T Consensus 71 DTVtes~MAiaMAl~ggIg~IHhNctpe~QA~~v~~vK~~~~g~---~~----~p~v~sp~~tvg-~v~~~k~~~gF~g~ 142 (503)
T KOG2550|consen 71 DTVTESEMAIAMALLGGIGFIHHNCTPEDQADMVRRVKNYENGF---IN----NPIVISPTTTVG-EVKEAKEKHGFSGI 142 (503)
T ss_pred cccchhHHHHHHHhcCCceeeecCCCHHHHHHHHHHHHHhhccc---cc----CCcccCCcccch-hhhhhccccccccc
Confidence 3567777777666543211001111 355677788877665422 22 456788999999 99999899999999
Q ss_pred EEEeCC--CCCEEEEEEhhhHhcccccCCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEeeCCCCccccccc
Q 010123 262 PIYSGN--PKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKKSQSIS 339 (517)
Q Consensus 262 PV~ddd--~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDEyG~~~G~~~~~ 339 (517)
||.++. ..+++|+|+.+|+-.. .+..+.+.++|....++.+...++.++-+.+++.+...+||||+.|...-++..+
T Consensus 143 pvTe~g~~~~KLvG~vtsrdi~f~-~~~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rt 221 (503)
T KOG2550|consen 143 PVTEDGKRGSKLVGIITSRDIQFL-EDNSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRT 221 (503)
T ss_pred ccccCCcccceeEEEEehhhhhhh-hcccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehh
Confidence 999643 2579999999998655 5557889999988889999999999999999999999999999999888887443
No 101
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=97.89 E-value=1e-05 Score=87.91 Aligned_cols=100 Identities=15% Similarity=0.146 Sum_probs=83.7
Q ss_pred cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCcc
Q 010123 222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPR 301 (517)
Q Consensus 222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~ 301 (517)
.+.+++++|++ +++++++++++. ++++.|.++++..+||+|++ ++++|+|+.+|++....+. ..+++|.....+
T Consensus 193 ~~~~v~~im~~--~~~~v~~~~~~~-eal~~m~~~~~~~lpVVD~~-g~lvGiIt~~Dil~~l~~~--~~ed~~~~~gv~ 266 (449)
T TIGR00400 193 PEEILSSIMRS--SVFSIVGVNDQE-EVARLIQKYDFLAVPVVDNE-GRLVGIVTVDDIIDVIQSE--ATEDFYMIAAVK 266 (449)
T ss_pred CCCcHHHHhCC--CCeeECCCCCHH-HHHHHHHHcCCCEEeEEcCC-CeEEEEEEHHHHHHHHHhh--hHHHHHHhcCCC
Confidence 56789999986 688899999999 99999999999999999865 7899999999999876543 346776655555
Q ss_pred cCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 302 VPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 302 V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
..+++.+.+.+..|.+++...++|.-
T Consensus 267 ~~~~~~l~~~~~~~~~~R~~wL~v~~ 292 (449)
T TIGR00400 267 PLDDSYFDTSILVMAKNRIIWLLVLL 292 (449)
T ss_pred CCcchhhhchHHHHHHhccchHHHHH
Confidence 55678889999999999999998874
No 102
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.70 E-value=7.8e-05 Score=64.04 Aligned_cols=56 Identities=13% Similarity=0.146 Sum_probs=49.6
Q ss_pred ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
+.++.++|.. .+.++.+++++. ++++.|.+++.+++||++++ ++++|+|+.+|++.
T Consensus 55 ~~~v~~~~~~--~~~~v~~~~~l~-~al~~m~~~~~~~lpVvd~~-~~~~Giit~~di~~ 110 (111)
T cd04603 55 TLKVCEVYIV--PVPIVYCDSKVT-DLLRIFRETEPPVVAVVDKE-GKLVGTIYERELLR 110 (111)
T ss_pred ccChhheeec--CCcEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CeEEEEEEhHHhhc
Confidence 3568999974 678899999999 99999999999999999865 78999999999875
No 103
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=97.62 E-value=0.00015 Score=61.69 Aligned_cols=59 Identities=20% Similarity=0.335 Sum_probs=51.0
Q ss_pred cccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 220 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 220 ~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
++...++.++|.+ ++.++++++++. ++++.+.+++...+||++++ ++++|+|+.+|++.
T Consensus 55 ~~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~iG~it~~di~~ 113 (114)
T cd04604 55 DILTLPVADVMTR--NPKTIDPDALAA-EALELMEENKITALPVVDDN-GRPVGVLHIHDLLR 113 (114)
T ss_pred ccccCCHHHhhcc--CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEEEHHHhhc
Confidence 3445679999985 567899999999 99999999999999999865 89999999999875
No 104
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=97.57 E-value=9.6e-05 Score=73.57 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=38.0
Q ss_pred CcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 288 ETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 288 ~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
+.++.++|.++++++.+++++.++.+.|.+++++-+||+|
T Consensus 171 k~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd 210 (294)
T COG2524 171 KEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVD 210 (294)
T ss_pred cchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceec
Confidence 4578899999999999999999999999999999999999
No 105
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.56 E-value=0.0002 Score=62.42 Aligned_cols=55 Identities=13% Similarity=0.248 Sum_probs=49.2
Q ss_pred cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
.+|+++|.+ ++..+++++++. ++++.|.++++..+||++++ ++++|+|+.+|+..
T Consensus 58 ~~v~dim~~--~~~~v~~~~~l~-~a~~~~~~~~~~~lpVvd~~-~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINR--KPVTARPNDPLR-EALNLMHEHNIRTLPVVDDD-GTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCC--CCCEECCcCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHhhc
Confidence 679999985 678899999999 99999999999999999865 78999999999863
No 106
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.53 E-value=0.00015 Score=62.21 Aligned_cols=58 Identities=21% Similarity=0.345 Sum_probs=50.4
Q ss_pred ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
+.++.++|.+...+.++++++++. ++++.|.+++.+++||++++ ++++|+++.+|++.
T Consensus 56 ~~~v~~~~~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vv~~~-~~~~Gvl~~~di~~ 113 (114)
T cd04801 56 QTTVIQVMTPAAKLVTVLSEESLA-EVLKLLEEQGLDELAVVEDS-GQVIGLITEADLLR 113 (114)
T ss_pred ccchhhhhcccccceEECCCCcHH-HHHHHHHHCCCCeeEEEcCC-CcEEEEEeccceec
Confidence 467889998644567899999999 99999999999999999864 78999999999864
No 107
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.53 E-value=0.00017 Score=62.46 Aligned_cols=61 Identities=15% Similarity=0.192 Sum_probs=51.5
Q ss_pred ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCC--CCEEEEEEhhhHhc
Q 010123 221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNP--KNIIGLLLVKSLLT 282 (517)
Q Consensus 221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~--d~iVGiV~~kDLl~ 282 (517)
+.+.+++++|+...++.++++++++. ++++.|.++++.++||++++. ++++|+|+..|++.
T Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 55 LQKVPVGVIMTRMPNITTTTPEESVL-EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred ccCCCHHHHhCCCCCcEEECCCCcHH-HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 34667889997323688999999998 999999999999999998652 58999999999864
No 108
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.52 E-value=0.00031 Score=77.34 Aligned_cols=100 Identities=15% Similarity=0.222 Sum_probs=73.0
Q ss_pred ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCC-
Q 010123 221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRM- 299 (517)
Q Consensus 221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v- 299 (517)
..+.+|+++|++..+++++++++++. ++++.|.+++..++||++++ ++++|+|+.+|+++...... ...+- ....
T Consensus 158 ~~~~~V~dIMt~~~~~itv~~d~~l~-eAl~lM~e~~i~~LPVVD~~-g~LvGIIT~~Dilk~~~~P~-a~~d~-~grL~ 233 (502)
T PRK07107 158 SLDTKVKDFMTPFEKLVTANEGTTLK-EANDIIWDHKLNTLPIVDKN-GNLVYLVFRKDYDSHKENPL-ELLDS-SKRYV 233 (502)
T ss_pred CCCCCHHHHhCCCCCeEEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEhHHHHhcccChh-hhhhh-ccCee
Confidence 45678999999766899999999999 99999999999999999865 78999999999997642211 11121 1111
Q ss_pred --cccCCCCCHHHHHHHHHhCCCcEEEE
Q 010123 300 --PRVPADMPLYDILNEFQKGSSHMAAV 325 (517)
Q Consensus 300 --~~V~~~~~l~daL~~m~~~~~~~apV 325 (517)
..+..+ ...+..+.+.+.+...+.|
T Consensus 234 V~~av~~~-~~~~ra~~Lv~aGvd~i~v 260 (502)
T PRK07107 234 VGAGINTR-DYAERVPALVEAGADVLCI 260 (502)
T ss_pred eeeccChh-hHHHHHHHHHHhCCCeEee
Confidence 123333 3556777788888877654
No 109
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.51 E-value=0.00018 Score=61.95 Aligned_cols=57 Identities=21% Similarity=0.311 Sum_probs=50.1
Q ss_pred cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
.+.+++++|.. ++.++.+++++. ++++.|.+++..++||++++ ++++|+|+.+|++.
T Consensus 57 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~~Gvi~~~dl~~ 113 (114)
T cd04619 57 CTAPVENVMTR--AVVSCRPGDLLH-DVWQVMKQRGLKNIPVVDEN-ARPLGVLNARDALK 113 (114)
T ss_pred ccCCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeEEEECCC-CcEEEEEEhHhhcc
Confidence 34678899974 788899999999 99999999999999999865 78999999999874
No 110
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.50 E-value=0.0002 Score=62.47 Aligned_cols=39 Identities=23% Similarity=0.236 Sum_probs=36.6
Q ss_pred cccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 289 TPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 289 ~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
.++.++|.+++.++++++++.++++.|.+++.+.+||+|
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd 96 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVD 96 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEEC
Confidence 568899988999999999999999999999999999999
No 111
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.44 E-value=0.00017 Score=80.06 Aligned_cols=111 Identities=9% Similarity=0.093 Sum_probs=83.0
Q ss_pred cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc---------------
Q 010123 222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE--------------- 286 (517)
Q Consensus 222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~--------------- 286 (517)
...+|+++|+. .+++++++++++. ++.+.|.+++++++||++++ ++++|+|+.+|++.....
T Consensus 244 ~~~~V~~iM~~-~~~~~~~~~~~~~-~~~~~m~~~~~~~~PVvd~~-g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~ 320 (546)
T PRK14869 244 QSIPVSYIMTT-EDLVTFSKDDYLE-DVKEVMLKSRYRSYPVVDED-GKVVGVISRYHLLSPVRKKVILVDHNEKSQAVE 320 (546)
T ss_pred cCCCHHHhccC-CCcEEECCCCcHH-HHHHHHHhcCCCceEEEcCC-CCEEEEEEHHHhhccccCceEEEcCcccccccc
Confidence 36789999982 4789999999999 99999999999999999866 899999999999864321
Q ss_pred -----------CCcccccccccCCccc---CCCCCHHHHHHHHHhCCCcEEEEEeeCCCCcccc
Q 010123 287 -----------TETPVSAVSIRRMPRV---PADMPLYDILNEFQKGSSHMAAVVKVKGKSKKSQ 336 (517)
Q Consensus 287 -----------~~~~V~dim~r~v~~V---~~~~~l~daL~~m~~~~~~~apVVDEyG~~~G~~ 336 (517)
+..++.++|.+.+..+ +...+...+.+.|++.+....|++... -..|++
T Consensus 321 ~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia~~-ll~gIl 383 (546)
T PRK14869 321 GIEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIAGL-LLAAIL 383 (546)
T ss_pred chhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHHHH-HHHHHH
Confidence 0113445555554443 345566788888999998888887532 345555
No 112
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.35 E-value=0.00041 Score=59.32 Aligned_cols=56 Identities=21% Similarity=0.406 Sum_probs=49.0
Q ss_pred ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
+.++.++|.+ .+.++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++.
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~ 112 (113)
T cd04607 57 DDPVSEVMNR--NPITAKVGSSRE-EILALMRERSIRHLPILDEE-GRVVGLATLDDLLS 112 (113)
T ss_pred CCCHHHhhcC--CCEEEcCCCCHH-HHHHHHHHCCCCEEEEECCC-CCEEEEEEhHHhcc
Confidence 3568899974 577899999999 99999999999999999865 78999999999874
No 113
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.34 E-value=0.00039 Score=59.62 Aligned_cols=58 Identities=19% Similarity=0.397 Sum_probs=51.3
Q ss_pred ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
+.+.++.++|.+ ++.++++++++. ++++.|.+.+.+++||++++ ++++|+|+.+|++.
T Consensus 64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvvt~~di~~ 121 (122)
T cd04585 64 LSKIKVSDIMTR--DPITVSPDASVE-EAAELMLERKISGLPVVDDQ-GRLVGIITESDLFR 121 (122)
T ss_pred hcccCHHHhccC--CCeEeCCCCcHH-HHHHHHHHcCCCceeEECCC-CcEEEEEEHHHhhh
Confidence 356789999975 688999999999 99999999999999999865 79999999999875
No 114
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=97.28 E-value=0.00023 Score=72.12 Aligned_cols=41 Identities=15% Similarity=0.138 Sum_probs=38.5
Q ss_pred CcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEee
Q 010123 288 ETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVKV 328 (517)
Q Consensus 288 ~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDE 328 (517)
+.+..+||.|++++|++++++.++.+.|++++++.+||+||
T Consensus 244 ~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~ 284 (382)
T COG3448 244 ELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDE 284 (382)
T ss_pred cccHHHhcCccceecCCcCChHHHHHHHHHcCccccccccc
Confidence 55678999999999999999999999999999999999994
No 115
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.28 E-value=0.0006 Score=57.92 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=41.9
Q ss_pred eEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 236 TFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 236 vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
++++.+++++. ++++.|.+++..++||++++.++++|+|+.+|++.
T Consensus 52 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 LVSIHPERSLF-DAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred eEEeCCCCcHH-HHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 67899999999 99999999999999999864478999999999874
No 116
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.25 E-value=0.0004 Score=61.02 Aligned_cols=60 Identities=22% Similarity=0.364 Sum_probs=47.4
Q ss_pred cccccccccccccceEEec----CCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 222 TEKTAEEAMTPIESTFSLD----VNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 222 ~~~tV~dIMtPr~~vv~v~----~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
.+.+++++|++...++.++ +++++. ++++.|.+++.+++||++++.++++|+|+..|++.
T Consensus 62 ~~~~v~~im~~~~~~~~~~~~~~~~~~l~-~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 62 SELTVADVMTPKEDLKALDLEELENASVG-DVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred hheEHHHhcCchhhhccccHHHhccCcHH-HHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 4567899997533333443 678888 99999999999999999864358999999999874
No 117
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.25 E-value=0.00098 Score=73.04 Aligned_cols=95 Identities=15% Similarity=0.200 Sum_probs=73.0
Q ss_pred cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccc----cccCC
Q 010123 224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAV----SIRRM 299 (517)
Q Consensus 224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~di----m~r~v 299 (517)
.+++++|++ ++.++++++++. ++++.|.+++...+||++++ ++++|+|+.+|++...... +..+. +....
T Consensus 148 ~~V~diMt~--~~itV~~d~sL~-eAl~lM~~~~i~~LPVVD~~-g~lvGIIT~~DIl~~~~~~--~~~~~~g~l~V~aa 221 (479)
T PRK07807 148 TQVRDVMST--DLVTLPAGTDPR-EAFDLLEAARVKLAPVVDAD-GRLVGVLTRTGALRATIYT--PAVDAAGRLRVAAA 221 (479)
T ss_pred CCHHHhccC--CceEECCCCcHH-HHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhCC--chhhhhhccchHhh
Confidence 569999984 789999999999 99999999999999999865 7999999999999764422 22221 11222
Q ss_pred cccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 300 PRVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 300 ~~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
+.-.....+.+..|.+.+... +|+|
T Consensus 222 --v~~~~~~~~~a~~Lv~aGvd~-i~~D 246 (479)
T PRK07807 222 --VGINGDVAAKARALLEAGVDV-LVVD 246 (479)
T ss_pred --hccChhHHHHHHHHHHhCCCE-EEEe
Confidence 222334778899999999888 5677
No 118
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.25 E-value=0.0006 Score=57.34 Aligned_cols=56 Identities=20% Similarity=0.382 Sum_probs=49.0
Q ss_pred ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
+.+++++|.+ .+.++++++++. ++++.|.+++..++||++++ ++++|+++.+|++.
T Consensus 51 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvi~~~di~~ 106 (107)
T cd04610 51 DETVEEIMSK--DLVVAVPEMDIM-DAARVMFRTGISKLPVVDEN-NNLVGIITNTDVIR 106 (107)
T ss_pred cccHHHhCCC--CCeEECCCCCHH-HHHHHHHHhCCCeEeEECCC-CeEEEEEEHHHhhc
Confidence 3568899975 577899999998 99999999999999999865 78999999999875
No 119
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.25 E-value=0.00086 Score=56.38 Aligned_cols=54 Identities=15% Similarity=0.308 Sum_probs=47.4
Q ss_pred ccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 225 TAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 225 tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
+++++|.+ .+..+++++++. ++++.|.++++..+||++++ ++++|+|+.+|++.
T Consensus 52 ~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~~l~~ 105 (106)
T cd04582 52 CCGDHAEP--FKVTVSVDDDLR-IVLSRMFAHDMSWLPCVDED-GRYVGEVTQRSIAD 105 (106)
T ss_pred chhhhccc--CCEEECCCCCHH-HHHHHHHHCCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence 47889975 466789999998 99999999999999999865 78999999999874
No 120
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.24 E-value=0.0012 Score=72.56 Aligned_cols=110 Identities=18% Similarity=0.244 Sum_probs=79.4
Q ss_pred ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCc---ccccccccCC
Q 010123 223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETET---PVSAVSIRRM 299 (517)
Q Consensus 223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~---~V~dim~r~v 299 (517)
..+++++|++ .+++++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|++......+. .-..++....
T Consensus 146 ~~~V~dim~~-~~~v~v~~~~sl~-eal~~m~~~~~~~lpVVDe~-g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aa 222 (486)
T PRK05567 146 SQPVSEVMTK-ERLVTVPEGTTLE-EALELLHEHRIEKLPVVDDN-GRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAA 222 (486)
T ss_pred CCcHHHHcCC-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEhHHhhhhhhCCCcccccCCCEEEEee
Confidence 4579999984 4788999999999 99999999999999999876 899999999999865422111 1112223334
Q ss_pred cccCCCCCHHHHHHHHHhCCCcEEEEEee-CCCCcccccc
Q 010123 300 PRVPADMPLYDILNEFQKGSSHMAAVVKV-KGKSKKSQSI 338 (517)
Q Consensus 300 ~~V~~~~~l~daL~~m~~~~~~~apVVDE-yG~~~G~~~~ 338 (517)
+.+.++ -.+.++.|.+.+.+.+ |+|. +|...++++.
T Consensus 223 i~~~~~--~~e~a~~L~~agvdvi-vvD~a~g~~~~vl~~ 259 (486)
T PRK05567 223 VGVGAD--NEERAEALVEAGVDVL-VVDTAHGHSEGVLDR 259 (486)
T ss_pred cccCcc--hHHHHHHHHHhCCCEE-EEECCCCcchhHHHH
Confidence 444442 2788889999999965 5663 5666665543
No 121
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.24 E-value=0.00063 Score=58.93 Aligned_cols=58 Identities=17% Similarity=0.441 Sum_probs=51.2
Q ss_pred ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
....+++++|.+ .+.++++++++. ++++.|.+.+.+++||++++ ++++|+|+.+|++.
T Consensus 66 ~~~~~i~~~~~~--~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvit~~di~~ 123 (124)
T cd04600 66 DKPETVGDIMSP--PVVTVRPDTPIA-ELVPLLADGGHHHVPVVDED-RRLVGIVTQTDLIA 123 (124)
T ss_pred cccccHHHhccC--CCeeeCCCCcHH-HHHHHHHhcCCCceeEEcCC-CCEEEEEEhHHhhc
Confidence 456679999974 788999999998 99999999999999999864 89999999999875
No 122
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.21 E-value=0.00069 Score=57.57 Aligned_cols=55 Identities=16% Similarity=0.383 Sum_probs=48.5
Q ss_pred ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
+.++.++|.+ ++.++++++++. ++++.|.+++..++||+++ ++++|+|+.+|++.
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~l~Vv~~--~~~~Gvvt~~dl~~ 111 (112)
T cd04625 57 DTTVRAIMNP--EPIVASPDDSID-EVRRLMVERHLRYLPVLDG--GTLLGVISFHDVAK 111 (112)
T ss_pred cCCHHHHhCC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEEC--CEEEEEEEHHHhhc
Confidence 4578899964 677899999998 9999999999999999974 78999999999875
No 123
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.20 E-value=0.00077 Score=57.78 Aligned_cols=56 Identities=14% Similarity=0.270 Sum_probs=49.5
Q ss_pred cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
.+.++.++|. .++.++++++++. ++++.|.+++...+||+++ ++++|+|+..|++.
T Consensus 58 ~~~~v~~~~~--~~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~~~dl~~ 113 (114)
T cd04630 58 DRVNVYEIMT--KPLISVSPDMDIK-YCARLMERTNIRRAPVVEN--NELIGIISLTDIFL 113 (114)
T ss_pred CccCHHHHhc--CCCeeECCCCCHH-HHHHHHHHcCCCEeeEeeC--CEEEEEEEHHHhhc
Confidence 4567889996 3688999999998 9999999999999999975 78999999999875
No 124
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.19 E-value=0.0019 Score=71.29 Aligned_cols=102 Identities=16% Similarity=0.213 Sum_probs=73.7
Q ss_pred cccccccccc---ceEEecCC-CChhHHHHHHHHHcCCcEEEEE-eCCCCCEEEEEEhhhHhccccc-------------
Q 010123 225 TAEEAMTPIE---STFSLDVN-SKLDWEAIGKILARGHSRVPIY-SGNPKNIIGLLLVKSLLTVRAE------------- 286 (517)
Q Consensus 225 tV~dIMtPr~---~vv~v~~d-~tl~~eal~~l~~~g~Sr~PV~-ddd~d~iVGiV~~kDLl~~~~~------------- 286 (517)
-..++|.|+. ....+..+ .+++ +....|.++.|+.+||+ +++...++|+|..+|+......
T Consensus 544 ~~~~v~~p~~~~~~L~~i~~~s~tl~-~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~ 622 (696)
T KOG0475|consen 544 LAIPVMEPCRSESCLIVITQDSMTLE-DLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSI 622 (696)
T ss_pred hhhhhhchhcCchhheeccccceeHH-HHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceeccc
Confidence 3455665532 24444444 7888 88889999999999988 4455789999999998642110
Q ss_pred --------------CCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 287 --------------TETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 287 --------------~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
....++++|.-.+.+|...+|...++++|++-+.....|..
T Consensus 623 ~f~~~~~~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~ 677 (696)
T KOG0475|consen 623 YFNDPSPSAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK 677 (696)
T ss_pred ccCCCCccccCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc
Confidence 01246677766777899999999999999988877776643
No 125
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.17 E-value=0.00085 Score=56.78 Aligned_cols=55 Identities=18% Similarity=0.462 Sum_probs=49.0
Q ss_pred ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
+.+++++|.+ ++.++++++++. ++++.+.+.+.+++||+++ ++++|+|+.+|++.
T Consensus 58 ~~~~~~~~~~--~~~~v~~~~~~~-~~l~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 112 (113)
T cd04623 58 DTPVSEIMTR--NVITVTPDDTVD-EAMALMTERRFRHLPVVDG--GKLVGIVSIGDVVK 112 (113)
T ss_pred ccCHHHhcCC--CcEEECCCCcHH-HHHHHHHHcCCCEeEEEeC--CEEEEEEEHHHhhc
Confidence 5578999975 678899999998 9999999999999999975 78999999999874
No 126
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.17 E-value=0.00091 Score=58.26 Aligned_cols=52 Identities=21% Similarity=0.250 Sum_probs=45.5
Q ss_pred cccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHh
Q 010123 226 AEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLL 281 (517)
Q Consensus 226 V~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl 281 (517)
+.++|. .++.++++++++. ++++.|.+++.+++||++++ ++++|+|+..|+.
T Consensus 70 ~~~~~~--~~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~vGiit~~di~ 121 (123)
T cd04627 70 DLTIGT--SDVISINGDQPLI-DALHLMHNEGISSVAVVDNQ-GNLIGNISVTDVR 121 (123)
T ss_pred hcccCc--CCceEeCCCCCHH-HHHHHHHHcCCceEEEECCC-CcEEEEEeHHHhh
Confidence 345776 4788999999998 99999999999999999865 7899999999974
No 127
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.16 E-value=0.00088 Score=57.30 Aligned_cols=56 Identities=18% Similarity=0.296 Sum_probs=47.8
Q ss_pred ccccccccccccceEEecCC--CChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 223 EKTAEEAMTPIESTFSLDVN--SKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 223 ~~tV~dIMtPr~~vv~v~~d--~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
+.++.++|.+ ++.+++++ +++. ++++.|.+++..++||++++ ++++|+|+.+|+++
T Consensus 57 ~~~i~~~~~~--~~~~v~~~~~~~l~-~a~~~~~~~~~~~~pVvd~~-~~~~Gvit~~dl~~ 114 (115)
T cd04620 57 DLPIGEVMTQ--PVVTLQESEIQDIF-TALSLFRQHQIRHLPVLDDQ-GQLIGLVTAESIRQ 114 (115)
T ss_pred ccCHHHhcCC--CcEEEecccccCHH-HHHHHHHHhCCceEEEEcCC-CCEEEEEEhHHhhc
Confidence 4678899974 67778776 6787 99999999999999999865 89999999999875
No 128
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.16 E-value=0.00072 Score=70.06 Aligned_cols=58 Identities=21% Similarity=0.365 Sum_probs=52.0
Q ss_pred ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcc
Q 010123 221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTV 283 (517)
Q Consensus 221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~ 283 (517)
+.+.+|+++|++ ++.++++++++. ++++.|.+++..++||+++ ++++|+|+.+|++..
T Consensus 266 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~--~~lvGiit~~dil~~ 323 (326)
T PRK10892 266 LRQASIADVMTP--GGIRVRPGILAV-DALNLMQSRHITSVLVADG--DHLLGVLHMHDLLRA 323 (326)
T ss_pred cccCCHHHhcCC--CCEEECCCCCHH-HHHHHHHHCCCcEEEEeeC--CEEEEEEEhHHhHhc
Confidence 456789999985 788999999999 9999999999999999974 689999999999864
No 129
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.16 E-value=0.0012 Score=72.80 Aligned_cols=101 Identities=14% Similarity=0.223 Sum_probs=73.0
Q ss_pred cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCC--ccccc----cc
Q 010123 222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETE--TPVSA----VS 295 (517)
Q Consensus 222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~--~~V~d----im 295 (517)
.+.+|+++|++...++++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++......+ .+..| ++
T Consensus 161 ~~~~V~eIMt~~~~lvtv~~~~sL~-eAl~~m~~~~~~~LPVVD~~-g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~ 238 (505)
T PLN02274 161 RETKLSEVMTSDDDLVTAPAGIDLE-EAEAVLKDSKKGKLPLVNED-GELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLL 238 (505)
T ss_pred cCCcHHHHhccCCCcEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhCcCccccccCCCCCEE
Confidence 4678999999765688999999999 99999999999999999865 78999999999987643211 11111 11
Q ss_pred ccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 296 IRRMPRVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 296 ~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
..- .|.......+-.+.+.+.+..++ ++|
T Consensus 239 vga--avg~~~~~~~r~~~l~~ag~d~i-~iD 267 (505)
T PLN02274 239 VGA--AIGTRESDKERLEHLVKAGVDVV-VLD 267 (505)
T ss_pred EEE--EEcCCccHHHHHHHHHHcCCCEE-EEe
Confidence 111 23333344566777777888775 556
No 130
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.15 E-value=0.0009 Score=56.72 Aligned_cols=57 Identities=21% Similarity=0.381 Sum_probs=49.8
Q ss_pred ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
..++.++|.+ ++.++++++++. ++++.|.+.++..+||++++.++++|+++.+|++.
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 57 LVVASDIMTK--PPVVVYPEDSLE-DALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred cEEHHHhccC--CCcEEcCCCCHH-HHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 4789999985 678899999998 99999999999999999761378999999999874
No 131
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.13 E-value=0.00094 Score=56.69 Aligned_cols=57 Identities=18% Similarity=0.401 Sum_probs=50.1
Q ss_pred cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
.+.+++++|.+ ++.++++++++. ++++.|.+++...+||++++ ++++|+++.+|++.
T Consensus 51 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~di~~ 107 (108)
T cd04596 51 PDTTIEKVMTK--NPITVNPKTSVA-SVAHMMIWEGIEMLPVVDDN-KKLLGIISRQDVLK 107 (108)
T ss_pred ccccHHHHhcC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CCEEEEEEHHHhhc
Confidence 35679999974 678899999999 99999999999999999865 78999999999874
No 132
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.12 E-value=0.001 Score=56.65 Aligned_cols=57 Identities=18% Similarity=0.339 Sum_probs=49.5
Q ss_pred cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
.+.++.++|.+ ++.+++.++++. ++++.|.+++..++||++++ ++++|+++.+|++.
T Consensus 56 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvvt~~dl~~ 112 (113)
T cd04615 56 KDAKVREVMNS--PVITIDANDSIA-KARWLMSNNNISRLPVLDDK-GKVGGIVTEDDILR 112 (113)
T ss_pred cCCcHHHhccC--CceEECCCCcHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEEHHHhhc
Confidence 44578889974 678899999998 99999999999999999765 79999999999874
No 133
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=97.12 E-value=0.056 Score=58.23 Aligned_cols=41 Identities=12% Similarity=0.108 Sum_probs=37.1
Q ss_pred CCccccccccc--CCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 287 TETPVSAVSIR--RMPRVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 287 ~~~~V~dim~r--~v~~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
.+.+++++|.. ++.+++.++++.++++.|.+++....||.+
T Consensus 189 ~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~ 231 (408)
T TIGR03520 189 GNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYK 231 (408)
T ss_pred CCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEc
Confidence 35789999874 688999999999999999999999999998
No 134
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.08 E-value=0.001 Score=57.73 Aligned_cols=58 Identities=14% Similarity=0.362 Sum_probs=50.6
Q ss_pred ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
..+.++.++|.+ .+.++++++++. ++++.|.+.+...+||++++ ++++|+|+.+|++.
T Consensus 67 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~~-~~~~Gvit~~di~~ 124 (125)
T cd04631 67 AINEPVRSIMTR--NVITITPDDSIK-DAAELMLEKRVGGLPVVDDD-GKLVGIVTERDLLK 124 (125)
T ss_pred hhhcCHHHHhcC--CceEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CcEEEEEEHHHhhc
Confidence 345678899974 688999999998 99999999999999999865 78999999999875
No 135
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.08 E-value=0.0012 Score=55.99 Aligned_cols=56 Identities=18% Similarity=0.351 Sum_probs=48.7
Q ss_pred ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
..++.++|.+ .+.++.+++++. ++++.|.+.+..++||++++ ++++|+|+.+|+++
T Consensus 57 ~~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~ 112 (113)
T cd04622 57 TTTVGDVMTR--GVVTVTEDDDVD-EAARLMREHQVRRLPVVDDD-GRLVGIVSLGDLAR 112 (113)
T ss_pred cCCHHHhccC--CccEECCCCCHH-HHHHHHHHcCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence 3458899974 677899999999 99999999999999999765 78999999999874
No 136
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.08 E-value=0.0011 Score=59.42 Aligned_cols=56 Identities=21% Similarity=0.346 Sum_probs=49.8
Q ss_pred cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
.+.+++++|++ ++..+++++++. ++++.|.+.++.++||+++ ++++|+|+.+|++.
T Consensus 79 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~--~~~~Gvit~~di~~ 134 (135)
T cd04621 79 VPLVAEDIMTE--EIITVSPNDDVV-DAAKLMLEANISGLPVVDN--DNIVGVITKTDICR 134 (135)
T ss_pred ccccHHHhcCC--CCeEECCCCCHH-HHHHHHHHcCCCEEEEEeC--CEEEEEEEHHHHhh
Confidence 46689999975 677899999999 9999999999999999975 78999999999874
No 137
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=97.08 E-value=0.0012 Score=55.69 Aligned_cols=56 Identities=25% Similarity=0.450 Sum_probs=46.8
Q ss_pred ccccccccccccceEEecC-CCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 223 EKTAEEAMTPIESTFSLDV-NSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 223 ~~tV~dIMtPr~~vv~v~~-d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
+.++.++|.+ .+..+.. ++++. ++++.|.+.++.++||++++ ++++|+|+.+|++.
T Consensus 53 ~~~v~~~~~~--~~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~dil~ 109 (110)
T cd04601 53 DKPVSEVMTP--ENLLTTVEGTSLE-EALELLHEHKIEKLPVVDDE-GKLKGLITVKDIEK 109 (110)
T ss_pred CCCHHHhccc--CceEEecCCCCHH-HHHHHHHHhCCCeeeEEcCC-CCEEEEEEhhhhhc
Confidence 4578899964 3445566 99998 99999999999999999865 78999999999874
No 138
>COG0517 FOG: CBS domain [General function prediction only]
Probab=97.07 E-value=0.0019 Score=55.01 Aligned_cols=53 Identities=21% Similarity=0.502 Sum_probs=47.6
Q ss_pred ccccccccccceEEecCCCChhHHHHHHHHH-cCCcEEEEEeCCCC-CEEEEEEhhhHh
Q 010123 225 TAEEAMTPIESTFSLDVNSKLDWEAIGKILA-RGHSRVPIYSGNPK-NIIGLLLVKSLL 281 (517)
Q Consensus 225 tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~-~g~Sr~PV~ddd~d-~iVGiV~~kDLl 281 (517)
+++++|+. .++++.++.++. ++.+.|.+ +++.++||++++ + +++|+++.+|++
T Consensus 63 ~v~~v~~~--~~~~~~~~~~~~-~~~~~m~~~~~~~~lpVv~~~-~~~lvGivt~~di~ 117 (117)
T COG0517 63 PVKEVMTK--PVVTVDPDTPLE-EALELMVERHKIRRLPVVDDD-GGKLVGIITLSDIL 117 (117)
T ss_pred cHHHhccC--CcEEECCCCCHH-HHHHHHHHHcCcCeEEEEECC-CCeEEEEEEHHHcC
Confidence 79999984 788999999999 99999999 799999999875 4 899999999974
No 139
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.07 E-value=0.0015 Score=45.86 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=26.9
Q ss_pred CcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 299 MPRVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 299 v~~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
++++++++++.++++.|.+.+.+.+||++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 30 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVD 30 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEEC
Confidence 56789999999999999999999999998
No 140
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.05 E-value=0.0014 Score=56.65 Aligned_cols=58 Identities=14% Similarity=0.302 Sum_probs=50.5
Q ss_pred ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
..+.++.++|. .++.++++++++. ++++.|.+.+...+||++++ ++++|+++.+|++.
T Consensus 64 ~~~~~v~~~~~--~~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dl~~ 121 (122)
T cd04803 64 ERDVPVAEVMK--TDVLTVTPDTPLR-EAAEIMVENKIGCLPVVDDK-GTLVGIITRSDFLR 121 (122)
T ss_pred ccCcCHHHhhC--CCCeEeCCCCcHH-HHHHHHHHcCCCeEEEEcCC-CCEEEEEEHHHhhc
Confidence 35667889996 4678999999998 99999999999999999865 78999999999875
No 141
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.04 E-value=0.0015 Score=56.57 Aligned_cols=53 Identities=15% Similarity=0.196 Sum_probs=45.7
Q ss_pred cccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 226 AEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 226 V~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
..++|. .++.++.+++++. ++++.|.+++.+++||++++ ++++|+|+.+|++.
T Consensus 67 ~~~~~~--~~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-~~~~Givt~~di~~ 119 (120)
T cd04641 67 RRSQDF--EGVRTCSPDDCLR-TIFDLIVKARVHRLVVVDEN-KRVEGIISLSDILQ 119 (120)
T ss_pred hcccCC--CCCeEEcCCCcHH-HHHHHHHhcCccEEEEECCC-CCEEEEEEHHHhhc
Confidence 345565 3678999999999 99999999999999999865 78999999999875
No 142
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=97.04 E-value=0.001 Score=56.50 Aligned_cols=55 Identities=22% Similarity=0.359 Sum_probs=48.7
Q ss_pred cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
.++.++|.+ .+.++++++++. ++++.+.+++..++||++++ ++++|+|+.+|++.
T Consensus 58 ~~v~~i~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~~-~~~~Gvvs~~dl~~ 112 (113)
T cd04587 58 TLVERVMTP--NPVCATSDTPVL-EALHLMVQGKFRHLPVVDKS-GQVVGLLDVTKLTH 112 (113)
T ss_pred CCHHHhcCC--CCeEEcCCCCHH-HHHHHHHHcCCCcccEECCC-CCEEEEEEHHHhcc
Confidence 578899964 677899999998 99999999999999999875 78999999999874
No 143
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.04 E-value=0.0012 Score=58.33 Aligned_cols=56 Identities=16% Similarity=0.391 Sum_probs=49.4
Q ss_pred cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
...++.++|.+ ++..+++++++. ++++.|.+.+..++||+++ ++++|+++.+|++.
T Consensus 76 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl~~ 131 (132)
T cd04636 76 LGKKVEEIMTK--KVITVDEDTTIE-DVARIMSKKNIKRLPVVDD--GKLVGIISRGDIIR 131 (132)
T ss_pred cCCCHHHhccC--CceEECCCCcHH-HHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHhhc
Confidence 34479999974 678899999999 9999999999999999986 78999999999875
No 144
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.04 E-value=0.0014 Score=55.71 Aligned_cols=55 Identities=22% Similarity=0.457 Sum_probs=48.5
Q ss_pred ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
+.++.++|. +++.++.+++++. ++++.|.+++..++||+++ ++++|+|+..|++.
T Consensus 56 ~~~v~~~~~--~~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~di~~ 110 (111)
T cd04626 56 EKKVFNIVS--QDVFYVNEEDTID-EALDIMREKQIGRLPVVDD--NKLIGVVRTKDILD 110 (111)
T ss_pred cCcHHHHhc--CCcEEEcCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEhHHhcc
Confidence 457888897 4788899999998 9999999999999999986 78999999999874
No 145
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=97.04 E-value=0.0016 Score=55.84 Aligned_cols=56 Identities=23% Similarity=0.530 Sum_probs=48.1
Q ss_pred cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCC-CCCEEEEEEhhhHhc
Q 010123 224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGN-PKNIIGLLLVKSLLT 282 (517)
Q Consensus 224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd-~d~iVGiV~~kDLl~ 282 (517)
.++.++|.+ ++.++.+++++. ++++.|.+++..++||++++ .++++|+|+..|++.
T Consensus 58 ~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 58 SAVDEVATP--PLLTVHPDEPLA-HALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred ccHHHhccC--CceEECCCCCHH-HHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 347788874 688899999999 99999999999999999764 268999999999875
No 146
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=97.03 E-value=0.0016 Score=55.01 Aligned_cols=54 Identities=13% Similarity=0.215 Sum_probs=47.3
Q ss_pred cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
.++.++|.+ +..+++++.++. ++++.|.+++..++||+++ ++++|+++.+|++.
T Consensus 50 ~~~~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~iGvit~~dl~~ 103 (104)
T cd04594 50 GDVVDYIVR--GIPYVRLTSTAE-EAWEVMMKNKTRWCPVVDD--GKFKGIVTLDSILD 103 (104)
T ss_pred cchhhhhhc--CCcEEcCCCCHH-HHHHHHHHcCcceEEEEEC--CEEEEEEEHHHhhc
Confidence 357888974 577899999999 9999999999999999973 79999999999874
No 147
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.03 E-value=0.0025 Score=69.89 Aligned_cols=95 Identities=12% Similarity=0.175 Sum_probs=71.9
Q ss_pred cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCccccccc----ccCC
Q 010123 224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVS----IRRM 299 (517)
Q Consensus 224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim----~r~v 299 (517)
.+++++|++ +++++++++++. ++++.|.++++..+||++++ ++++|+|+.+||++..... +..+.. ....
T Consensus 146 ~~V~dIMt~--~litv~~~~sL~-eAl~lM~~~~i~~LPVVD~~-g~LvGIIT~~DLl~~~~~~--~~~d~~grl~Vgaa 219 (475)
T TIGR01303 146 TQVRDIMST--DLVTAPADTEPR-KAFDLLEHAPRDVAPLVDAD-GTLAGILTRTGALRATIYT--PATDAAGRLRIGAA 219 (475)
T ss_pred CCHHHHccC--CceEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhCC--chhhhccCceehhe
Confidence 579999995 788999999999 99999999999999999865 7899999999999754322 222211 1111
Q ss_pred cccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 300 PRVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 300 ~~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
+.......+.+..|.+.+...+ |+|
T Consensus 220 --v~~~~~~~~ra~~Lv~aGVd~i-~~D 244 (475)
T TIGR01303 220 --VGINGDVGGKAKALLDAGVDVL-VID 244 (475)
T ss_pred --eeeCccHHHHHHHHHHhCCCEE-EEe
Confidence 3334456788888888888774 667
No 148
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.03 E-value=0.0014 Score=67.75 Aligned_cols=57 Identities=19% Similarity=0.300 Sum_probs=50.9
Q ss_pred ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcc
Q 010123 223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTV 283 (517)
Q Consensus 223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~ 283 (517)
+.+|+++|++ ++.++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++.+
T Consensus 262 ~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~lvGvIt~~di~~~ 318 (321)
T PRK11543 262 TTPVNEAMTR--GGTTLQAQSRAI-DAKEILMKRKITAAPVVDEN-GKLTGAINLQDFYQA 318 (321)
T ss_pred CCcHHHhcCC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHhc
Confidence 4568999985 688899999999 99999999999999999865 689999999999864
No 149
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=97.02 E-value=0.0017 Score=54.84 Aligned_cols=55 Identities=18% Similarity=0.382 Sum_probs=48.3
Q ss_pred cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
.++.++|.+ ++.+++.++++. ++++.|.+++...+||++++ ++++|+|+.+|++.
T Consensus 56 ~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~ 110 (111)
T cd04612 56 VLVGDVMTR--DPVTASPDETLR-DALKRMAERDIGRLPVVDDS-GRLVGIVSRSDLLR 110 (111)
T ss_pred cCHHHhccC--CCeEECCCCCHH-HHHHHHHhCCCCeeeEEcCC-CCEEEEEEHHHhhh
Confidence 467788874 688999999999 99999999999999999764 78999999999874
No 150
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.02 E-value=0.00099 Score=57.41 Aligned_cols=57 Identities=11% Similarity=0.351 Sum_probs=50.5
Q ss_pred ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
+.+.++.++|.+ ++.+++.++++. ++++.+.+.+.+++||+++ ++++|+++.+|++.
T Consensus 64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl~~ 120 (121)
T cd04633 64 IRNLPVSDIMTR--PVITIEPDTSVS-DVASLMLENNIGGLPVVDD--GKLVGIVTRTDILR 120 (121)
T ss_pred hhccCHHHHccC--CceEECCCCcHH-HHHHHHHHcCCCcccEEEC--CEEEEEEEHHHhhc
Confidence 456688899974 688999999999 9999999999999999985 78999999999875
No 151
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.00 E-value=0.0017 Score=55.08 Aligned_cols=56 Identities=16% Similarity=0.354 Sum_probs=49.3
Q ss_pred cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
.+.++.++|.+ .+.++++++++. ++++.|.+++...+||++ + ++++|+|+.+|++.
T Consensus 54 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~-~-~~~~Gvvt~~di~~ 109 (110)
T cd04595 54 GHAPVKDYMST--DVVTVPPDTPLS-EVQELMVEHDIGRVPVVE-D-GRLVGIVTRTDLLR 109 (110)
T ss_pred ccCcHHHHhcC--CCEEECCCCcHH-HHHHHHHHcCCCeeEEEe-C-CEEEEEEEhHHhhc
Confidence 45678899974 678899999999 999999999999999998 3 78999999999874
No 152
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.99 E-value=0.0015 Score=55.49 Aligned_cols=57 Identities=12% Similarity=0.303 Sum_probs=49.9
Q ss_pred ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcc
Q 010123 223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTV 283 (517)
Q Consensus 223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~ 283 (517)
+.+++++|.+ ++..+++++++. ++++.+.+++...+||++++ ++++|+|+..|++..
T Consensus 52 ~~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dll~~ 108 (109)
T cd04606 52 DTPVSDIMDT--DVISVSADDDQE-EVARLFEKYDLLALPVVDEE-GRLVGIITVDDVIDV 108 (109)
T ss_pred cchHHHHhCC--CCeEEcCCCCHH-HHHHHHHHcCCceeeeECCC-CcEEEEEEhHHhhhh
Confidence 4578999975 578899999998 99999999999999999865 789999999999853
No 153
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.99 E-value=0.0021 Score=70.82 Aligned_cols=100 Identities=15% Similarity=0.178 Sum_probs=70.8
Q ss_pred cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCc---ccccccccC
Q 010123 222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETET---PVSAVSIRR 298 (517)
Q Consensus 222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~---~V~dim~r~ 298 (517)
.+.+|+++|+|..++++++++.++. ++++.|.+++...+||++++ ++++|+|+.+|++......+. .-..+...-
T Consensus 157 ~~~~V~diMt~~~~lvtv~~~~sl~-eAl~lm~e~~i~~LPVVd~~-g~liGIIT~~DIl~~~~~p~a~~D~~GrL~Vga 234 (495)
T PTZ00314 157 KSTPVSEVMTPREKLVVGNTPISLE-EANEVLRESRKGKLPIVNDN-GELVALVSRSDLKKNRGYPNASLDSNGQLLVGA 234 (495)
T ss_pred CCCCHHHhhCCcCCceEeCCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEehHhhhcccCchhhhccCCCEEEEE
Confidence 3568999999767899999999999 99999999999999999875 789999999999976321110 001111111
Q ss_pred CcccCCCCCHHHHHHHHHhCCCcEEEE
Q 010123 299 MPRVPADMPLYDILNEFQKGSSHMAAV 325 (517)
Q Consensus 299 v~~V~~~~~l~daL~~m~~~~~~~apV 325 (517)
.|.......+.+..+.+.+..++.|
T Consensus 235 --avg~~~~~~~~~~~l~~ag~d~i~i 259 (495)
T PTZ00314 235 --AISTRPEDIERAAALIEAGVDVLVV 259 (495)
T ss_pred --EECCCHHHHHHHHHHHHCCCCEEEE
Confidence 2322223356667777777777644
No 154
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=96.98 E-value=0.0016 Score=54.78 Aligned_cols=55 Identities=27% Similarity=0.561 Sum_probs=48.3
Q ss_pred cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
.++.++|.+ ++.++++++++. ++++.+.+++..++||++++ ++++|+++.+|++.
T Consensus 54 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~vv~~~-g~~~Gvit~~~l~~ 108 (109)
T cd04583 54 KSLEDIMLE--DVFTVQPDASLR-DVLGLVLKRGPKYVPVVDED-GKLVGLITRSSLVD 108 (109)
T ss_pred CcHhHhhcC--CceEECCCCcHH-HHHHHHHHcCCceeeEECCC-CeEEEEEehHHhhc
Confidence 468888974 678899999998 99999999999999999865 78999999999874
No 155
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=96.98 E-value=0.0013 Score=56.43 Aligned_cols=57 Identities=21% Similarity=0.288 Sum_probs=46.4
Q ss_pred cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
..++++|.+....+..++++++. ++++.|.+++...+||++++ ++++|+|+.+|++.
T Consensus 57 ~~v~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~pVv~~~-~~~~Gvit~~di~~ 113 (114)
T cd04602 57 TPLSEVMTPREVLVVAPTGITLE-EANEILRESKKGKLPIVNDD-GELVALVTRSDLKK 113 (114)
T ss_pred CCHHHhcCCCceEEECCCCCCHH-HHHHHHHhcCCCceeEECCC-CeEEEEEEHHHhhc
Confidence 45889997643443334499998 99999999999999999765 78999999999874
No 156
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=96.96 E-value=0.0015 Score=56.09 Aligned_cols=57 Identities=18% Similarity=0.278 Sum_probs=50.5
Q ss_pred ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
....++.++|.+ .+.+++.++++. ++++.+.+++++.+||+++ ++++|+++.+|++.
T Consensus 64 ~~~~~v~~~~~~--~~~~i~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~~Gvv~~~di~~ 120 (121)
T cd04584 64 LLKMPVKEIMTK--DVITVHPLDTVE-EAALLMREHRIGCLPVVED--GRLVGIITETDLLR 120 (121)
T ss_pred hcCcCHHHHhhC--CCeEECCCCcHH-HHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHhhc
Confidence 456779999975 678899999999 9999999999999999975 78999999999874
No 157
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=96.95 E-value=0.0018 Score=55.06 Aligned_cols=56 Identities=21% Similarity=0.259 Sum_probs=49.3
Q ss_pred cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
.+.+++++|.+ ++..+++++++. ++++.|.+++..++||+++ ++++|+|+.+|++.
T Consensus 55 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~dl~~ 110 (111)
T cd04589 55 SSTPVGEIATF--PLITVDPDDFLF-NALLLMTRHRIHRVVVREG--GEVVGVLEQTDLLS 110 (111)
T ss_pred CCCCHHHHhCC--CcEEECCCCcHH-HHHHHHHHhCccEEEEeeC--CEEEEEEEhHHhhc
Confidence 45578899974 688999999998 9999999999999999975 78999999999875
No 158
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.95 E-value=0.0016 Score=55.17 Aligned_cols=55 Identities=16% Similarity=0.334 Sum_probs=48.5
Q ss_pred cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
.++.++|. .++..+++++++. ++++.|.+++..++||++++ ++++|+++.+|+..
T Consensus 56 ~~v~~~~~--~~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~ 110 (111)
T cd04639 56 APVRGVMR--RDFPTVSPSATLD-AVLRLMQQGGAPAVPVVDGS-GRLVGLVTLENVGE 110 (111)
T ss_pred CcHHHHhc--CCCcEECCCCcHH-HHHHHHHhcCCceeeEEcCC-CCEEEEEEHHHhhc
Confidence 46888996 3688999999999 99999999999999999765 78999999999864
No 159
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.94 E-value=0.0016 Score=56.13 Aligned_cols=57 Identities=18% Similarity=0.409 Sum_probs=50.0
Q ss_pred cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
...++.++|. .++..++.++++. ++++.|.+++.+++||++++ ++++|+++.+|++.
T Consensus 65 ~~~~~~~~~~--~~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvit~~dl~~ 121 (122)
T cd04635 65 ASPTVEKIMS--TPVYSVTPDDSIA-TAVELMLEHDIGRLPVVNEK-DQLVGIVDRHDVLK 121 (122)
T ss_pred ccCcHHHHhc--CCCeeECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CcEEEEEEhHHhhc
Confidence 4567889996 3678899999998 99999999999999999865 88999999999874
No 160
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=96.93 E-value=0.0046 Score=65.94 Aligned_cols=99 Identities=17% Similarity=0.241 Sum_probs=76.4
Q ss_pred ccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC----------Ccccccc---ccc
Q 010123 231 TPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET----------ETPVSAV---SIR 297 (517)
Q Consensus 231 tPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~----------~~~V~di---m~r 297 (517)
+++...+++.+..++- ++...+.++++.|+||.+.+.++++.+++.+-++...... ..++.+. +..
T Consensus 159 ~~~~~~~~i~p~~s~l-~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~ 237 (381)
T KOG1764|consen 159 TLKPPFVSISPESSLL-DAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWS 237 (381)
T ss_pred ccCCCceeecCcHHHH-HHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhh
Confidence 3444447888888887 8888899999999999985557999999999998754321 1222222 123
Q ss_pred CCcccCCCCCHHHHHHHHHhCCCcEEEEEeeCC
Q 010123 298 RMPRVPADMPLYDILNEFQKGSSHMAAVVKVKG 330 (517)
Q Consensus 298 ~v~~V~~~~~l~daL~~m~~~~~~~apVVDEyG 330 (517)
.+..+.+++++.++++.|...+..-+||||++|
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g 270 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIMSERRISALPVVDENG 270 (381)
T ss_pred hheeecCCCcHHHHHHHHHhcCcCcceEEcCCC
Confidence 577899999999999999999999999999533
No 161
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=96.92 E-value=0.0021 Score=54.23 Aligned_cols=57 Identities=18% Similarity=0.316 Sum_probs=49.5
Q ss_pred cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
.+.+++++|.+ ++..+++++++. ++++.+.+.+...+||++++ ++++|+|+.+|++.
T Consensus 54 ~~~~v~~~~~~--~~~~~~~~~~l~-~~l~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~di~~ 110 (111)
T cd04611 54 LQTPVGEVMSS--PLLTVPADTSLY-DARQLMREHGIRHLVVVDDD-GELLGLLSQTDLLQ 110 (111)
T ss_pred CCcCHHHhcCC--CceEECCCCCHH-HHHHHHHHcCCeEEEEECCC-CcEEEEEEhHHhhc
Confidence 45678899974 688899999998 99999999999999999865 78999999999874
No 162
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.89 E-value=0.0015 Score=55.74 Aligned_cols=55 Identities=11% Similarity=0.274 Sum_probs=46.7
Q ss_pred cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
.+.+++++|.+ .+.++++++++. ++++.|.+.+ .+||++++ ++++|+++.+|++.
T Consensus 61 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~--~~~Vv~~~-~~~~Gvit~~dil~ 115 (116)
T cd04643 61 VDLKVIDVMNT--DVPVIIDDADIE-EILHLLIDQP--FLPVVDDD-GIFIGIITRREILK 115 (116)
T ss_pred hCCcHHHHhcC--CCceecCCCCHH-HHHHHHhcCC--ceeEEeCC-CeEEEEEEHHHhhc
Confidence 46679999985 578899999998 9999998755 59999865 78999999999875
No 163
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.89 E-value=0.002 Score=53.92 Aligned_cols=54 Identities=17% Similarity=0.345 Sum_probs=48.3
Q ss_pred ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHh
Q 010123 223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLL 281 (517)
Q Consensus 223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl 281 (517)
+.++.++|.+ ++.++++++++. ++++.|.+++..++||+++ ++++|+|+.+|++
T Consensus 50 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~~l~ 103 (105)
T cd04599 50 NRLVADAMTR--EVVTISPEASLL-EAKRLMEEKKIERLPVLRE--RKLVGIITKGTIA 103 (105)
T ss_pred cCCHHHHccC--CCEEECCCCCHH-HHHHHHHHcCCCEeeEEEC--CEEEEEEEHHHhc
Confidence 4568899974 688999999999 9999999999999999985 7999999999987
No 164
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.89 E-value=0.0015 Score=57.86 Aligned_cols=57 Identities=18% Similarity=0.308 Sum_probs=50.6
Q ss_pred ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
....++.++|.+ ++.++++++++. ++++.|.+.+.+++||++ + ++++|+|+.+|++.
T Consensus 78 ~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~l~Vvd-~-g~~~Gvit~~di~~ 134 (135)
T cd04586 78 SHGRKVADVMTR--PVVTVGEDTPLA-EVAELMEEHRIKRVPVVR-G-GRLVGIVSRADLLR 134 (135)
T ss_pred hcCCCHHHHhCC--CceEeCCCCcHH-HHHHHHHHcCCCccCEec-C-CEEEEEEEhHhhhc
Confidence 356789999974 688999999999 999999999999999998 4 89999999999874
No 165
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.88 E-value=0.0021 Score=54.51 Aligned_cols=56 Identities=21% Similarity=0.452 Sum_probs=48.7
Q ss_pred cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
.+.++.++|.+ ++.++.+++++. ++++.+.+++...+||+++ ++++|+|+.+|++.
T Consensus 56 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~di~~ 111 (112)
T cd04802 56 REVPVGEVMST--PLITIDPNASLN-EAAKLMAKHGIKRLPVVDD--DELVGIVTTTDIVM 111 (112)
T ss_pred ccCCHHHhcCC--CcEEECCCCCHH-HHHHHHHHcCCCeeEEeeC--CEEEEEEEhhhhhc
Confidence 45578899974 688899999999 9999999999999999986 38999999999874
No 166
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=96.84 E-value=0.0015 Score=61.02 Aligned_cols=39 Identities=13% Similarity=0.196 Sum_probs=36.0
Q ss_pred cccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 289 TPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 289 ~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
.+.+.+|.+|+++|.+++++.++++.|++++...+||++
T Consensus 65 ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~ 103 (187)
T COG3620 65 ITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIE 103 (187)
T ss_pred EeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceee
Confidence 345678999999999999999999999999999999998
No 167
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.84 E-value=0.0018 Score=55.01 Aligned_cols=55 Identities=15% Similarity=0.300 Sum_probs=48.8
Q ss_pred ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
+.++.++|.+ ++.++++++++. ++++.|.+++..++||+++ ++++|+|+.+|+++
T Consensus 59 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 113 (114)
T cd04629 59 VATVRDIMTT--EVLTVSPDDSIV-DLAQLMLKAKPKRYPVVDD--GKLVGQISRRDVLR 113 (114)
T ss_pred CccHHHHhcc--CceEECCCCcHH-HHHHHHHHhCCCccCEEEC--CEEEEEEEHHHHhc
Confidence 4578899974 677899999999 9999999999999999985 78999999999874
No 168
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.84 E-value=0.0021 Score=55.56 Aligned_cols=55 Identities=27% Similarity=0.451 Sum_probs=48.6
Q ss_pred cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
.+++++|. .+++.+++++++. ++++.+.+++..++||++++ ++++|+++.+|++.
T Consensus 67 ~~~~~~~~--~~~~~v~~~~~l~-~~~~~~~~~~~~~~~vv~~~-~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIMT--RDPITVSPDTPVD-EASKLLLENSISCLPVVDEN-GQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhhc--CCCeeeCCCCcHH-HHHHHHHHcCCCeEeEECCC-CCEEEEEEHHHhhh
Confidence 45888896 4688999999999 99999999999999999765 78999999999875
No 169
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=96.81 E-value=0.0038 Score=56.34 Aligned_cols=30 Identities=20% Similarity=0.225 Sum_probs=27.7
Q ss_pred CCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 298 RMPRVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 298 ~v~~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
.++++++++++.++++.|.+++.+.+||+|
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD 31 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVD 31 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEEC
Confidence 457899999999999999999999999999
No 170
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=96.81 E-value=0.0029 Score=44.39 Aligned_cols=46 Identities=15% Similarity=0.455 Sum_probs=40.1
Q ss_pred eEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcc
Q 010123 236 TFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTV 283 (517)
Q Consensus 236 vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~ 283 (517)
+.++++++++. ++++.+.+++++.+||++++ ++++|+++.++++..
T Consensus 2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~i~~~~l~~~ 47 (49)
T smart00116 2 VVTVSPDTTLE-EALELLREHGIRRLPVVDEE-GRLVGIVTRRDIIKA 47 (49)
T ss_pred ceEecCCCcHH-HHHHHHHHhCCCcccEECCC-CeEEEEEEHHHHHHh
Confidence 45678899998 99999999999999999865 789999999998754
No 171
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=96.76 E-value=0.0028 Score=53.66 Aligned_cols=55 Identities=22% Similarity=0.431 Sum_probs=48.7
Q ss_pred ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
+.++.++|.. ++.++++++++. ++++.|.+++.+++||+++ ++++|+++.+|++.
T Consensus 56 ~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVMTA--PPITIPPDATVF-EALLLMLERGIHHLPVVDD--GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHhCC--CCeEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence 3568888863 688999999999 9999999999999999975 78999999999874
No 172
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.73 E-value=0.0062 Score=65.02 Aligned_cols=98 Identities=16% Similarity=0.130 Sum_probs=64.3
Q ss_pred HHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc-CCcccc
Q 010123 214 IISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE-TETPVS 292 (517)
Q Consensus 214 iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~-~~~~V~ 292 (517)
.+..+-...-.+++++|.|...+ ...+.+ . ++ .+++.+.+.|+++ |+++..+....... .+..+.
T Consensus 264 ~~~~~~~~~~l~a~~~m~~~~~~--~~~~~~-~--~~---~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 329 (382)
T TIGR03415 264 FVAHTNPLNVLTARSLMRPLTDL--EHVDGG-W--CV---SDRRDTWLFTIDK------QVRRRDAKLPVQAWAAEQEVE 329 (382)
T ss_pred HhcccCcccceeHHHHhcccccc--cccCcc-h--hh---hhcccceeEeecc------ceecccchHhHhhcccccchh
Confidence 33444445667899999763332 222332 2 22 3378888888864 78887776543221 234566
Q ss_pred cccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 293 AVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 293 dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
+ +....++|++++++.+++..+.+.... ++|+|
T Consensus 330 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~ 362 (382)
T TIGR03415 330 S-LEAAPTVINPDTLMRDVLAARHRTGGA-ILLVE 362 (382)
T ss_pred h-hcccCcccCCCCcHHHHHHHHhcCCCC-eEEee
Confidence 6 577888999999999999998887766 55667
No 173
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.73 E-value=0.0048 Score=52.33 Aligned_cols=56 Identities=14% Similarity=0.274 Sum_probs=48.3
Q ss_pred ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
+.+++++|.+ ++.++..++++. ++++.+.+++...+||++++ ++++|+++.+|+++
T Consensus 56 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gilt~~dl~~ 111 (112)
T cd04624 56 DTPVSEIMTR--DLVTVDPDEPVA-EAAKLMRKNNIRHHLVVDKG-GELVGVISIRDLVR 111 (112)
T ss_pred ccCHHHhccC--CCEEECCCCcHH-HHHHHHHHcCccEEEEEcCC-CcEEEEEEHHHhcc
Confidence 3468888874 688899999998 99999999999999999865 78999999999874
No 174
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.72 E-value=0.004 Score=54.47 Aligned_cols=51 Identities=20% Similarity=0.301 Sum_probs=44.7
Q ss_pred cccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 228 EAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 228 dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
+.|. .++.++++++++. ++++.|.+++..++||++++ ++++|+|+..|+++
T Consensus 75 ~~~~--~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vvd~~-~~~~Giit~~dil~ 125 (126)
T cd04642 75 GVKS--RPLITCTPSSTLK-EVITKLVANKVHRVWVVDEE-GKPIGVITLTDIIS 125 (126)
T ss_pred cccc--CCCeEECCCCcHH-HHHHHHHHhCCcEEEEECCC-CCEEEEEEHHHHhc
Confidence 4554 4678899999999 99999999999999999865 78999999999975
No 175
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.70 E-value=0.0031 Score=55.19 Aligned_cols=58 Identities=19% Similarity=0.383 Sum_probs=49.6
Q ss_pred cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeC-CCCCEEEEEEhhhHhc
Q 010123 222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSG-NPKNIIGLLLVKSLLT 282 (517)
Q Consensus 222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~dd-d~d~iVGiV~~kDLl~ 282 (517)
.+.++.++|++ ++++++++.++. ++++.|.++++..+||+++ +.++++|+|+.+|++.
T Consensus 69 ~~~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 69 LDLPVYDAMSS--PVITASPNDSVR-DAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred ccCcHHHHhcC--CCceECCCCcHH-HHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 45678999974 688999999998 9999999999999999853 3478999999999874
No 176
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.67 E-value=0.0041 Score=52.29 Aligned_cols=45 Identities=27% Similarity=0.439 Sum_probs=41.2
Q ss_pred eEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 236 TFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 236 vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
+.++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++.
T Consensus 51 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~~-~~~~Giit~~di~~ 95 (96)
T cd04614 51 VVTATKRTTVS-ECAQKMKRNRIEQIPIINGN-DKLIGLLRDHDLLK 95 (96)
T ss_pred cEEecCCCCHH-HHHHHHHHhCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence 67899999998 99999999999999999865 78999999999875
No 177
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.65 E-value=0.0064 Score=51.38 Aligned_cols=54 Identities=19% Similarity=0.359 Sum_probs=46.9
Q ss_pred ccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 225 TAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 225 tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
++.++|.+ ++.+++.++++. ++++.|.+++...+||++++ ++++|+|+.+|++.
T Consensus 56 ~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~v~~~di~~ 109 (110)
T cd04605 56 SVEDIMTR--NVITATPDEPID-VAARKMERHNISALPVVDAE-NRVIGIITSEDISK 109 (110)
T ss_pred CHHHhcCC--CCeEECCCCcHH-HHHHHHHHhCCCEEeEECCC-CcEEEEEEHHHhhh
Confidence 47788863 677899999999 99999999999999999865 89999999999864
No 178
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=96.61 E-value=0.0042 Score=52.57 Aligned_cols=53 Identities=9% Similarity=0.201 Sum_probs=45.4
Q ss_pred ccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 225 TAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 225 tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
.+.++|. .+.++++++++. ++++.|.+++.+.+||++++ ++++|+|+.+|++.
T Consensus 58 ~~~~~~~---~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~ 110 (111)
T cd04590 58 DLRDLLR---PPLFVPESTPLD-DLLEEMRKERSHMAIVVDEY-GGTAGLVTLEDILE 110 (111)
T ss_pred CHHHHhc---CCeecCCCCcHH-HHHHHHHhcCCcEEEEEECC-CCEEEEeEHHHhhc
Confidence 4566664 467889999998 99999999999999999865 78999999999874
No 179
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=96.60 E-value=0.0048 Score=52.17 Aligned_cols=55 Identities=16% Similarity=0.319 Sum_probs=48.0
Q ss_pred cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
.++.++|. ..+..++++.++. ++++.|.+.+...+||++++ ++++|+|+.+|++.
T Consensus 55 ~~v~~~~~--~~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~ 109 (110)
T cd04588 55 AKVKDVMT--KDVITIDEDEQLY-DAIRLMNKHNVGRLIVTDDE-GRPVGIITRTDILR 109 (110)
T ss_pred cCHHHHhc--CCceEECCCCCHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEEhHHhhc
Confidence 56788886 3678899999999 99999999999999999765 78999999999874
No 180
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=96.58 E-value=0.0048 Score=66.84 Aligned_cols=40 Identities=13% Similarity=0.089 Sum_probs=37.0
Q ss_pred CcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 288 ETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 288 ~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
..+++++|.+++.++++++++.++++.|.+++...+||+|
T Consensus 334 ~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd 373 (454)
T TIGR01137 334 NATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVT 373 (454)
T ss_pred cCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEc
Confidence 4578999989999999999999999999999999999998
No 181
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=96.57 E-value=0.0076 Score=53.12 Aligned_cols=31 Identities=10% Similarity=0.077 Sum_probs=28.8
Q ss_pred cCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 297 RRMPRVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 297 r~v~~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
+++.++++++++.++++.|++++...+||+|
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd 32 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVD 32 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEc
Confidence 5678899999999999999999999999998
No 182
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.48 E-value=0.0068 Score=62.68 Aligned_cols=104 Identities=18% Similarity=0.195 Sum_probs=74.1
Q ss_pred HHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcc
Q 010123 211 ETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETP 290 (517)
Q Consensus 211 E~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~ 290 (517)
-++.++++-...=.++++||.+ .+......+......+...+...+.+.+-+++. .++.+|+|+..++...
T Consensus 261 V~~Fv~~v~~~~VltA~~IM~~-~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~-~~~~~g~v~~~~~~~~------- 331 (386)
T COG4175 261 VRDFVRNVDRSRVLTAKDIMRR-PDLLIRKTPGDGPRVALKLLRDEGREYGYAVDR-GNKFVGVVSIDSLVKA------- 331 (386)
T ss_pred HHHHHhcCChhheeeHHHhhcc-cccccccccccccchhhhhhhhccchhhHHHhc-cCceeeEEeccchhcc-------
Confidence 4566777777788899999985 333322222222224666777777666666663 3679999998887644
Q ss_pred cccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 291 VSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 291 V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
.+..++..|+.++++.+.+....+...+++ |+|
T Consensus 332 ---~~~~~~~~v~~d~~~~~~~~~~~~~~~p~a-Vvd 364 (386)
T COG4175 332 ---ALIDDVLTVDADTPLSEILARIRQAPCPVA-VVD 364 (386)
T ss_pred ---cccccccccCccchHHHHHHHHhcCCCcee-EEc
Confidence 246778889999999999999999988776 667
No 183
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=96.47 E-value=0.0055 Score=68.66 Aligned_cols=59 Identities=22% Similarity=0.310 Sum_probs=51.8
Q ss_pred ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCC-CCEEEEEEhhhHhccc
Q 010123 223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNP-KNIIGLLLVKSLLTVR 284 (517)
Q Consensus 223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~-d~iVGiV~~kDLl~~~ 284 (517)
+.+++|+|++ ++.++++++++. ++++.|.+++.+++||+|++. ++++|+|+.+|+++..
T Consensus 511 ~~~v~dim~~--~~~~v~~d~~L~-~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l 570 (574)
T PRK01862 511 DKTAADYAHT--PFPLLTPDMPLG-DALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAY 570 (574)
T ss_pred cchHHHhccC--CCeeECCCCCHH-HHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHH
Confidence 4679999985 678899999999 999999999999999998653 4799999999998764
No 184
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=96.46 E-value=0.0038 Score=68.40 Aligned_cols=74 Identities=22% Similarity=0.276 Sum_probs=60.7
Q ss_pred CCCCChhHHHHHHHhhc---ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhH
Q 010123 204 GGELTHDETTIISGALD---LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSL 280 (517)
Q Consensus 204 ~G~L~~eE~~iI~~vl~---L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDL 280 (517)
.|.++ ++.+..+++. =...+|+++|| .++++++..+.+- |++-.|.++++.++||+++ |+++|+|+..|+
T Consensus 193 ~GIvT--~~dl~~~v~~~g~~~~~~V~evmT--~p~~svd~~~~~f-eAml~m~r~~I~hl~V~e~--gq~~Gilt~~dI 265 (610)
T COG2905 193 LGIVT--RKDLRSRVIADGRSKTQKVSEVMT--SPVISVDRGDFLF-EAMLMMLRNRIKHLPVTED--GQPLGILTLTDI 265 (610)
T ss_pred cceee--hHHHHHHHHhcCCCcccchhhhhc--cCceeecCcchHH-HHHHHHHHhCCceeeeecC--CeeeEEeeHHHH
Confidence 44444 3445555554 35678999999 5899999999998 9999999999999999986 899999999999
Q ss_pred hccc
Q 010123 281 LTVR 284 (517)
Q Consensus 281 l~~~ 284 (517)
+...
T Consensus 266 l~l~ 269 (610)
T COG2905 266 LRLF 269 (610)
T ss_pred HHhh
Confidence 8754
No 185
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=96.40 E-value=0.0072 Score=60.57 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=35.7
Q ss_pred cccccccccC-CcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 289 TPVSAVSIRR-MPRVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 289 ~~V~dim~r~-v~~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
.+++++|.++ ++++++++++.++++.|.+.+...++|+|
T Consensus 155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd 194 (268)
T TIGR00393 155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCD 194 (268)
T ss_pred hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEe
Confidence 4678888888 89999999999999999999999999999
No 186
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=96.37 E-value=0.0082 Score=51.25 Aligned_cols=49 Identities=18% Similarity=0.356 Sum_probs=43.6
Q ss_pred ccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 229 AMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 229 IMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
+|.+ ++.++++++++. ++++.|.+++...+||+++ ++++|+|+.+|++.
T Consensus 56 ~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~pVv~~--~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDP--SPFTVSPRTSLE-KVHQLFRKLGLRHLLVVDE--GRLVGIITRKDLLK 104 (105)
T ss_pred hccC--CCceECCCCcHH-HHHHHHHHcCCCEEEEEEC--CeEEEEEEhhhhhc
Confidence 7864 677899999999 9999999999999999953 78999999999875
No 187
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.30 E-value=0.0068 Score=51.99 Aligned_cols=57 Identities=23% Similarity=0.302 Sum_probs=46.9
Q ss_pred cccccccccccccceEEecCCCChhHHHHHHHHHcCC---cEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGH---SRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~---Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
.+.+++++|.+ .+..+++++++. ++++.|.+++. ...||++++ ++++|+|+.+|++.
T Consensus 59 ~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~vv~~~-~~~~Gvvs~~di~~ 118 (119)
T cd04598 59 GKKPVSEVMDP--DPLIVEADTPLE-EVSRLATGRDSQNLYDGFIVTEE-GRYLGIGTVKDLLR 118 (119)
T ss_pred cCCcHHHhcCC--CcEEecCCCCHH-HHHHHHHcCCcccccccEEEeeC-CeEEEEEEHHHHhc
Confidence 45679999975 688899999998 99999988875 345677665 89999999999874
No 188
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.30 E-value=0.0075 Score=54.37 Aligned_cols=56 Identities=11% Similarity=0.342 Sum_probs=49.5
Q ss_pred cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
...++.++|.+ .+.+++.++++. ++++.+.+.+++++||+++ ++++|+|+.+|++.
T Consensus 87 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl~~ 142 (143)
T cd04634 87 GKMKVRDIMTK--KVITISPDASIE-DAAELMVRHKIKRLPVVED--GRLVGIVTRGDIIE 142 (143)
T ss_pred hcCCHHHHcCC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 46678899975 688999999998 9999999999999999975 78999999999874
No 189
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.08 E-value=0.013 Score=49.24 Aligned_cols=53 Identities=17% Similarity=0.324 Sum_probs=45.9
Q ss_pred ccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 225 TAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 225 tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
++.++|.+ .+.+++.++++. ++++.|.+++...+||+++ ++++|+++.+|++.
T Consensus 53 ~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d~~~ 105 (106)
T cd04638 53 QLALLMTR--DPPTVSPDDDVK-EAAKLMVENNIRRVPVVDD--GKLVGIVTVADIVR 105 (106)
T ss_pred hHHHHhcC--CCceECCCCCHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 46777864 577889999998 9999999999999999985 68999999999874
No 190
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=96.03 E-value=0.011 Score=49.59 Aligned_cols=54 Identities=15% Similarity=0.233 Sum_probs=43.6
Q ss_pred ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
+.++.++|.+ ++.++++++++. ++.+.|.+ . ...||++++ ++++|+|+.+|++.
T Consensus 56 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~-~-~~~~vv~~~-~~~~Gvvt~~di~~ 109 (110)
T cd04609 56 SLPVREVMGE--PLPTVDPDAPIE-ELSELLDR-G-NVAVVVDEG-GKFVGIITRADLLK 109 (110)
T ss_pred CcCHHHHhcC--CCceeCCCCcHH-HHHHHHHh-C-CceeEEecC-CeEEEEEeHHHhhc
Confidence 3568888964 677899999998 88888887 3 347888765 78999999999875
No 191
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=95.99 E-value=0.011 Score=64.43 Aligned_cols=60 Identities=23% Similarity=0.424 Sum_probs=53.4
Q ss_pred cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccc
Q 010123 222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVR 284 (517)
Q Consensus 222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~ 284 (517)
.+.+++++|++ .+++++++++++. ++++.|.+++...+||++++ ++++|+|+.+|++...
T Consensus 141 ~~~~V~dvm~~-~~~~~V~~~~sl~-eal~~m~~~~~~~lpVVDe~-G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 141 KGKPVSEVMTR-EEVITVPEGIDLE-EALKVLHEHRIEKLPVVDKN-GELVGLITMKDIVKRR 200 (450)
T ss_pred CCCCHHHhhCC-CCCEEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEhHHhhhcc
Confidence 35689999984 4788999999999 99999999999999999875 8999999999999764
No 192
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=95.94 E-value=0.027 Score=46.57 Aligned_cols=53 Identities=21% Similarity=0.457 Sum_probs=46.3
Q ss_pred cccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 226 AEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 226 V~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
+.++|.. ++.++..++++. ++++.+.+.+...+||++++ ++++|+++.+|++.
T Consensus 60 ~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~ 112 (113)
T cd02205 60 VGDVMTR--DVVTVSPDTSLE-EAAELMLEHGIRRLPVVDDE-GRLVGIVTRSDILR 112 (113)
T ss_pred HHHHhcC--CceecCCCcCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEHHHhhc
Confidence 5677763 678889999998 99999999999999999876 89999999999874
No 193
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=95.86 E-value=0.019 Score=59.17 Aligned_cols=86 Identities=12% Similarity=0.173 Sum_probs=65.4
Q ss_pred ccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC---Cc------cccccc
Q 010123 225 TAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET---ET------PVSAVS 295 (517)
Q Consensus 225 tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~---~~------~V~dim 295 (517)
+++++|.| ++++++++++. ++++.|++++....||+++. |.++|+|+..|++...-.. +. .+..+
T Consensus 134 ~l~~l~r~---~~~V~e~~~l~-~~L~~m~~~~~~~a~VvDe~-G~viGiVTleDIle~ivGei~de~d~~~~~~i~~~- 207 (292)
T PRK15094 134 SMDKVLRQ---AVVVPESKRVD-RMLKEFRSQRYHMAIVIDEF-GGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQL- 207 (292)
T ss_pred CHHHHcCC---CcCcCCCCcHH-HHHHHHHhcCCEEEEEEeCC-CCEEEEeEHHHHHHHHhCCCccccccccccccEEe-
Confidence 46788864 45799999999 99999999999999999865 7899999999998754321 11 12111
Q ss_pred ccCCcccCCCCCHHHHHHHHH
Q 010123 296 IRRMPRVPADMPLYDILNEFQ 316 (517)
Q Consensus 296 ~r~v~~V~~~~~l~daL~~m~ 316 (517)
-.....|+..+++.++.+.+.
T Consensus 208 ~~~~~~v~G~~~l~dl~~~l~ 228 (292)
T PRK15094 208 SRHTWTVRALASIEDFNEAFG 228 (292)
T ss_pred CCCeEEEEeccCHHHHHHHhC
Confidence 223456999999999999873
No 194
>PRK11573 hypothetical protein; Provisional
Probab=95.42 E-value=1.6 Score=47.31 Aligned_cols=40 Identities=8% Similarity=0.174 Sum_probs=35.7
Q ss_pred Ccccccccc--cCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 288 ETPVSAVSI--RRMPRVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 288 ~~~V~dim~--r~v~~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
+.+++++|. .++..++.++++.++++.+.+++....||.+
T Consensus 186 ~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~ 227 (413)
T PRK11573 186 KVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYR 227 (413)
T ss_pred CCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEc
Confidence 567889885 4677899999999999999999999999987
No 195
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=94.77 E-value=1.3 Score=48.17 Aligned_cols=40 Identities=5% Similarity=0.091 Sum_probs=34.9
Q ss_pred Ccccccccc--cCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 288 ETPVSAVSI--RRMPRVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 288 ~~~V~dim~--r~v~~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
+.+++++|. .++.+++.+.+..++.+.+.+.+....||.|
T Consensus 205 ~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~ 246 (429)
T COG1253 205 DRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYD 246 (429)
T ss_pred CcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEc
Confidence 567888885 4567799999999999999999999999998
No 196
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=94.53 E-value=0.078 Score=55.46 Aligned_cols=60 Identities=15% Similarity=0.349 Sum_probs=53.4
Q ss_pred cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc
Q 010123 222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA 285 (517)
Q Consensus 222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~ 285 (517)
++.+...+|| ...+++.+.+++. .+.+.|.-.|+.-+||++++ .+++|+|+.+|++....
T Consensus 247 ~~t~ieKVMt--knp~tv~~~tsVA-svaq~MiwE~iem~PVv~~n-~~llGiitR~dvlk~lq 306 (432)
T COG4109 247 PSTTIEKVMT--KNPITVRAKTSVA-SVAQMMIWEGIEMLPVVDSN-NTLLGIITRQDVLKSLQ 306 (432)
T ss_pred CCccHHHHhc--cCCeeecccchHH-HHHHHHHhccceeeeEEcCC-ceEEEEEEHHHHHHHHH
Confidence 5677889999 4788999999998 99999999999999999876 78999999999997654
No 197
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=94.50 E-value=0.037 Score=60.29 Aligned_cols=61 Identities=13% Similarity=0.249 Sum_probs=54.3
Q ss_pred cccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccc
Q 010123 220 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVR 284 (517)
Q Consensus 220 ~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~ 284 (517)
.-.+..++++|.+ +++++.+++..+ ++.+.+.+++....||++++ ++++|+|+..|++...
T Consensus 192 a~~~~~i~~im~~--~~~~V~~~~dqe-evA~~~~~ydl~a~PVVd~~-~~LiG~itiDDiidvi 252 (451)
T COG2239 192 AEPDELLKDLMED--DVVSVLADDDQE-EVARLFEKYDLLAVPVVDED-NRLIGIITIDDIIDVI 252 (451)
T ss_pred CCcHhHHHHHhcc--cceeecccCCHH-HHHHHHHHhCCeecceECCC-CceeeeeeHHHHHHHH
Confidence 4467789999986 589999999998 99999999999999999876 8999999999998654
No 198
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=92.60 E-value=0.26 Score=52.41 Aligned_cols=58 Identities=19% Similarity=0.432 Sum_probs=50.0
Q ss_pred ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc
Q 010123 223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA 285 (517)
Q Consensus 223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~ 285 (517)
...+.+.|.+ ++.++++++++. +++..+.++++. +||++++ ++++|+|+..+++....
T Consensus 301 ~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~i~~~~~~~~~~ 358 (363)
T TIGR01186 301 AQGLQDVLID--DIYTVDAGTLLR-ETVRKVLKAGIK-VPVVDED-QRLVGIVTRGSLVDALY 358 (363)
T ss_pred CCchhhhhcc--CCceECCCCcHH-HHHHHHHhCCCC-EEEECCC-CcEEEEEEHHHHHHHHH
Confidence 3468888874 677899999999 999999999999 9999876 89999999999987653
No 199
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=91.18 E-value=0.22 Score=53.03 Aligned_cols=101 Identities=11% Similarity=0.125 Sum_probs=69.1
Q ss_pred cccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc---CCcccccccc
Q 010123 220 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE---TETPVSAVSI 296 (517)
Q Consensus 220 ~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~---~~~~V~dim~ 296 (517)
+=..+.+.++||++. ++.+.+.+++ ++-+.+.++.-.++||++++ |+++-++...||.+...- ....-+++|-
T Consensus 167 ~~~~~~~~~vmt~~~--~~~~~gi~l~-~~neiL~~~kkGkl~iv~~~-gelva~~~rtDl~k~~~yPlask~~~kqll~ 242 (503)
T KOG2550|consen 167 EDNSLLVSDVMTKNP--VTGAQGITLK-EANEILKKIKKGKLPVVDDK-GELVAMLSRTDLMKNRDYPLASKDSTKQLLC 242 (503)
T ss_pred hcccchhhhhccccc--ccccccccHH-HHHHHHHhhhcCCcceeccC-CceeeeeehhhhhhhcCCCccccCcccceee
Confidence 445677899999864 7888899998 99999999999999999876 999999999999875321 1112223332
Q ss_pred cCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 297 RRMPRVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 297 r~v~~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
...+-..+++ ..-+..+.+.+...+ |+|
T Consensus 243 gAaiGTre~d--K~rl~ll~~aGvdvv-iLD 270 (503)
T KOG2550|consen 243 GAAIGTRDDD--KERLDLLVQAGVDVV-ILD 270 (503)
T ss_pred eeccccccch--hHHHHHhhhcCCcEE-EEe
Confidence 2222222222 345566667776654 666
No 200
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=90.46 E-value=1.9 Score=43.86 Aligned_cols=82 Identities=18% Similarity=0.205 Sum_probs=52.1
Q ss_pred eEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC-----------------CcccccccccC
Q 010123 236 TFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET-----------------ETPVSAVSIRR 298 (517)
Q Consensus 236 vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~-----------------~~~V~dim~r~ 298 (517)
++.|..|. + |+++. -+|+-|.++ |+++=+=+..+++..+.++ ...+.+.|...
T Consensus 189 ivfVTHDi--d-EA~kL-----adri~vm~~--G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~ 258 (309)
T COG1125 189 IVFVTHDI--D-EALKL-----ADRIAVMDA--GEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRG 258 (309)
T ss_pred EEEEecCH--H-HHHhh-----hceEEEecC--CeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhccc
Confidence 55666655 4 77764 356778764 7888888877777654331 12233433322
Q ss_pred Cc----ccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 299 MP----RVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 299 v~----~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
.+ .++......+++..+...+...+||+|
T Consensus 259 ~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd 291 (309)
T COG1125 259 EPADGEPLLEGFVDRDALSDFLARGRSVLPVVD 291 (309)
T ss_pred ccccCCccccchhhHHHHHHHHhcCCceeEEEC
Confidence 21 244555566788899999999999999
No 201
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=89.19 E-value=0.82 Score=49.27 Aligned_cols=58 Identities=16% Similarity=0.332 Sum_probs=48.7
Q ss_pred ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc
Q 010123 223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA 285 (517)
Q Consensus 223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~ 285 (517)
..++.++|.+ ++.++++++++. +++..+.++.+. +||++++ ++++|+|+..+++....
T Consensus 336 ~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~~~~~~~~~~~~ 393 (400)
T PRK10070 336 QQGLDAALID--APLAVDAQTPLS-ELLSHVGQAPCA-VPVVDED-QQYVGIISKGMLLRALD 393 (400)
T ss_pred CCchhhhhcc--CCceeCCCCCHH-HHHHHHHhCCCc-EEEECCC-CcEEEEEEHHHHHHHHH
Confidence 3467788864 577899999999 999999987766 9999865 89999999999987654
No 202
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=76.79 E-value=10 Score=40.43 Aligned_cols=60 Identities=13% Similarity=0.219 Sum_probs=45.7
Q ss_pred cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcc
Q 010123 222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTV 283 (517)
Q Consensus 222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~ 283 (517)
++.+-.++|.--.+++.++..+++. ..+..+++++-.---|+|+- |.+.|+|++.|++..
T Consensus 263 ~~~~k~d~~~~a~epyFVPe~Tpl~-~QL~~F~~~k~hialVVDEY-G~i~GLVTLEDIlEE 322 (423)
T COG4536 263 NEFTKEDILRAADEPYFVPEGTPLS-DQLVAFQRNKKHIALVVDEY-GDIQGLVTLEDILEE 322 (423)
T ss_pred CcccHhHHHHHhcCCeecCCCCcHH-HHHHHHHHhcceEEEEEecc-CcEEeeeeHHHHHHH
Confidence 3355667776556889999999999 77777776655455566654 899999999999864
No 203
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=58.06 E-value=15 Score=39.50 Aligned_cols=55 Identities=9% Similarity=0.237 Sum_probs=42.8
Q ss_pred ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccc
Q 010123 223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVR 284 (517)
Q Consensus 223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~ 284 (517)
+.++.+ +. +++.++++++++. +++..+.++++. +||+++ ++++|+|+..+++...
T Consensus 325 ~~~~~~-~~--~~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~--~~~~g~~~~~~~~~~~ 379 (382)
T TIGR03415 325 EQEVES-LE--AAPTVINPDTLMR-DVLAARHRTGGA-ILLVEN--GRIVGVIGDDNIYHAL 379 (382)
T ss_pred ccchhh-hc--ccCcccCCCCcHH-HHHHHHhcCCCC-eEEeeC--CeEEEEEeHHHHHHHH
Confidence 344555 32 4677899999999 999988877764 788764 8999999999998654
No 204
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=53.07 E-value=18 Score=40.97 Aligned_cols=53 Identities=19% Similarity=0.281 Sum_probs=45.4
Q ss_pred ccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcc
Q 010123 227 EEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTV 283 (517)
Q Consensus 227 ~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~ 283 (517)
...|.| ..++++.++++. .+...++.-|..++-|+... .+++|+++.+|+...
T Consensus 693 ~p~~n~--sPytV~~~mSl~-k~~~lFR~lGLRhLlVv~~~-~~~~gilTR~D~~~~ 745 (762)
T KOG0474|consen 693 HPFMNP--SPYTVPETMSLA-KAFILFRQLGLRHLLVVPKT-NRVVGILTRKDLARY 745 (762)
T ss_pred ccccCC--CCcccCcccchH-HHHHHHHHhcceeEEEecCC-CceeEEEehhhhhhH
Confidence 445665 677899999998 99999999999999999865 678999999999854
No 205
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=52.41 E-value=12 Score=43.14 Aligned_cols=60 Identities=10% Similarity=0.118 Sum_probs=47.9
Q ss_pred cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCC-CCEEEEEEhhhHhccc
Q 010123 222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNP-KNIIGLLLVKSLLTVR 284 (517)
Q Consensus 222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~-d~iVGiV~~kDLl~~~ 284 (517)
..+.|+++|+ +++.++..+.|.. |..+.+.......+|++++.. --++|.|..+.|....
T Consensus 586 h~v~VE~iMV--~dv~yI~k~~Ty~-elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll 646 (931)
T KOG0476|consen 586 HTVKVEHIMV--TDVKYITKDTTYR-ELREALQTTTLRSFPLVESKESMILLGSVARRYLTALL 646 (931)
T ss_pred eEEEeeeecc--ccceeeeccCcHH-HHHHHHHhCccceeccccCcccceeeehhHHHHHHHHH
Confidence 5678999999 5999999999998 877766665588999998542 3478999999987543
No 206
>PF14163 SieB: Superinfection exclusion protein B
Probab=51.06 E-value=54 Score=30.21 Aligned_cols=38 Identities=24% Similarity=0.362 Sum_probs=24.5
Q ss_pred CCChhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcCC
Q 010123 206 ELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGH 258 (517)
Q Consensus 206 ~L~~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~ 258 (517)
.|+++|+..+...+.-+. ..+.++.++ .++..+.+.|.
T Consensus 78 ~Lt~~EkavL~~~~~~~~-----------~~~~lp~~~----~~v~~L~~~gI 115 (151)
T PF14163_consen 78 SLTPEEKAVLREFYIQGN-----------NTLTLPYNN----PAVKSLLQKGI 115 (151)
T ss_pred hCCHHHHHHHHHHHHCCC-----------CeEEecCCC----HHHHHHHHCCC
Confidence 588999999988765553 444566655 34455555553
No 207
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=47.28 E-value=28 Score=35.74 Aligned_cols=59 Identities=22% Similarity=0.247 Sum_probs=40.0
Q ss_pred cccccccccccccce--EEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 222 TEKTAEEAMTPIEST--FSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 222 ~~~tV~dIMtPr~~v--v~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
...++.+.|.+.... -.+....... +++..+...+.+.+||++++ ++++|.|+..+++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ls~~~~~~~~~~~Vvd~~-g~~~G~vt~~~l~~ 307 (309)
T COG1125 247 SLVSVADAVRRGEPADGEPLLEGFVDR-DALSDFLARGRSVLPVVDED-GRPLGTVTRADLLD 307 (309)
T ss_pred chhhHHHhhcccccccCCccccchhhH-HHHHHHHhcCCceeEEECCC-CcEeeEEEHHHHhh
Confidence 555677777652210 0111222223 56777888999999999876 89999999999875
No 208
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=45.61 E-value=2.5e+02 Score=25.92 Aligned_cols=12 Identities=25% Similarity=0.429 Sum_probs=5.1
Q ss_pred hhHHHHHHHHHH
Q 010123 165 PIAYPIGKILDA 176 (517)
Q Consensus 165 Plv~~i~~ll~~ 176 (517)
-+.+|+.+++++
T Consensus 131 ~l~~P~~~~l~~ 142 (183)
T PF01595_consen 131 ILLYPLVWLLSF 142 (183)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 209
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=43.27 E-value=54 Score=33.20 Aligned_cols=87 Identities=14% Similarity=0.219 Sum_probs=62.4
Q ss_pred cccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc---------CCcccccccc
Q 010123 226 AEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE---------TETPVSAVSI 296 (517)
Q Consensus 226 V~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~---------~~~~V~dim~ 296 (517)
++++..| .+.++..-.++ ..++.++.+++...-|+|+- |.+-|+|+..|++...-. .+..++.+ .
T Consensus 135 i~~lLRP---av~VPESKrvd-~lLkeFR~~RnHMAIViDEf-GgVsGLVTIEDiLEqIVGdIEDE~Deee~~dI~~l-s 208 (293)
T COG4535 135 IKELLRP---AVVVPESKRVD-RLLKEFRSQRNHMAIVIDEF-GGVSGLVTIEDILEQIVGDIEDEYDEEEDADIRQL-S 208 (293)
T ss_pred HHHhccc---ceecccchhHH-HHHHHHHhhcCceEEEEecc-CCeeeeEEHHHHHHHHhcccccccchhhhhhhHhh-c
Confidence 4455544 56788888888 88888998887777888765 889999999999864311 12234443 4
Q ss_pred cCCcccCCCCCHHHHHHHHHhC
Q 010123 297 RRMPRVPADMPLYDILNEFQKG 318 (517)
Q Consensus 297 r~v~~V~~~~~l~daL~~m~~~ 318 (517)
+....|..-+++++.=+.|-.+
T Consensus 209 ~~~~~VrALT~IedFNe~F~t~ 230 (293)
T COG4535 209 RHTWRVRALTEIEDFNEAFGTH 230 (293)
T ss_pred CCceEEEecccHHHHHHHhcCC
Confidence 5566788999998887777544
No 210
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=39.79 E-value=36 Score=38.05 Aligned_cols=33 Identities=15% Similarity=0.413 Sum_probs=28.0
Q ss_pred HHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123 248 EAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282 (517)
Q Consensus 248 eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~ 282 (517)
+..+.+.+.|-+-++|+++ +++.|+|++||+++
T Consensus 417 ~~~~~vs~~GGTPL~V~~~--~~~~GVI~LkDivK 449 (681)
T COG2216 417 AAVDEVSRLGGTPLVVVEN--GRILGVIYLKDIVK 449 (681)
T ss_pred HHHHHHHhcCCCceEEEEC--CEEEEEEEehhhcc
Confidence 4556677889999999986 79999999999985
No 211
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=34.83 E-value=54 Score=38.19 Aligned_cols=39 Identities=10% Similarity=0.188 Sum_probs=36.2
Q ss_pred cccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123 289 TPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK 327 (517)
Q Consensus 289 ~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD 327 (517)
..|.++|.+++.++..+++..|+-+.++....+..|+||
T Consensus 588 v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~ 626 (931)
T KOG0476|consen 588 VKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVE 626 (931)
T ss_pred EEeeeeccccceeeeccCcHHHHHHHHHhCccceecccc
Confidence 468899999999999999999999999888899999998
No 212
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=31.80 E-value=71 Score=36.47 Aligned_cols=53 Identities=9% Similarity=0.224 Sum_probs=42.6
Q ss_pred cccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcc
Q 010123 226 AEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTV 283 (517)
Q Consensus 226 V~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~ 283 (517)
.+++|-+ .++++...++.+ -+++++++-|.+..-|..+ |++.|+|+-||+++.
T Consensus 641 lk~il~~--tp~tv~d~tp~~-~v~~~F~~lg~~~~~v~~~--G~l~Giitkkd~l~~ 693 (696)
T KOG0475|consen 641 LKDILDM--TPFTVTDLTPME-TVVDLFRKLGLRQILVTKN--GILLGIITKKDCLRH 693 (696)
T ss_pred ceeeccC--CcccccccCcHH-HHHHHHHhhCceEEEEccC--CeeEeeeehHHHHHh
Confidence 4566643 466777888887 8889999999988888653 899999999999865
No 213
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=30.70 E-value=63 Score=34.23 Aligned_cols=48 Identities=19% Similarity=0.350 Sum_probs=38.3
Q ss_pred ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc
Q 010123 235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA 285 (517)
Q Consensus 235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~ 285 (517)
++.+++.|+++. +.+..+.+.+ ..+||++++ ++++|++....++.+..
T Consensus 336 ~~~~v~~d~~~~-~~~~~~~~~~-~p~aVvde~-~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 336 DVLTVDADTPLS-EILARIRQAP-CPVAVVDED-GRYVGIISRGELLEALA 383 (386)
T ss_pred cccccCccchHH-HHHHHHhcCC-CceeEEcCC-CcEEEEecHHHHHHHHh
Confidence 677889999988 7777766554 468899876 89999999999887643
No 214
>PF03563 Bunya_G2: Bunyavirus glycoprotein G2; InterPro: IPR005168 Bunyavirus has three genomic segments: small (S), middle-sized (M), and large (L). The S segment encodes the nucleocapsid and a non-structural protein. The M segment codes for two glycoproteins, G1 and G2, and another non-structural protein (NSm). The L segment codes for an RNA polymerase. This entry represents the polyprotein region forming the G2 glycoprotein, which interacts with the IPR005167 from INTERPRO G1 glycoprotein [].
Probab=30.43 E-value=1.3e+02 Score=30.86 Aligned_cols=24 Identities=33% Similarity=0.671 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHH
Q 010123 154 WLVRILMIICYPIAYPIGKILDAV 177 (517)
Q Consensus 154 ~~v~~l~~l~~Plv~~i~~ll~~l 177 (517)
++.++++-+|+|++|+-+++-++.
T Consensus 210 Yi~YlliPiF~P~~~~Yg~~ynk~ 233 (285)
T PF03563_consen 210 YICYLLIPIFYPIAYLYGWLYNKS 233 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778899999999888874
No 215
>PLN03140 ABC transporter G family member; Provisional
Probab=23.31 E-value=1.7e+03 Score=28.63 Aligned_cols=50 Identities=10% Similarity=0.014 Sum_probs=24.8
Q ss_pred hhhHHHHHHhhcCCCCeeeeecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010123 3 LLNVLTLARTTMPRNDVVFEADDIEFGNPWWFVYAGVSCVLVLFAGIMSGLTLGLMS 59 (517)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~LillsafFSg~E~Al~S 59 (517)
++-|+.++-++.+.+... + .......+.+.+++.+++.+|.+.+|+..+-
T Consensus 544 ii~ali~GsvF~~~~~~~------~-~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~ 593 (1470)
T PLN03140 544 IIVAAIASTVFLRTEMHT------R-NEEDGALYIGALLFSMIINMFNGFAELALMI 593 (1470)
T ss_pred HHHHHHHHHHHhcCCCCC------C-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666553211 1 1111123445555666666666666765543
No 216
>PF15284 PAGK: Phage-encoded virulence factor
Probab=22.54 E-value=98 Score=24.60 Aligned_cols=24 Identities=21% Similarity=0.067 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 010123 38 GVSCVLVLFAGIMSGLTLGLMSLG 61 (517)
Q Consensus 38 ~ii~~LillsafFSg~E~Al~Sl~ 61 (517)
.+.+++++.++.||++.+|--+.+
T Consensus 8 fL~l~~~LsA~~FSasamAa~~~~ 31 (61)
T PF15284_consen 8 FLALVFILSAAGFSASAMAADSSP 31 (61)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhCC
Confidence 455667888999999988855443
No 217
>TIGR00827 EIIC-GAT PTS system, galactitol-specific IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The only characterized member of this family of PTS transporters is the E. coli galactitol transporter. Gat family PTS systems typically have 3 components: IIA, IIB and IIC. This family is specific for the IIC component of the PTS Gat family.
Probab=21.81 E-value=3.3e+02 Score=29.74 Aligned_cols=65 Identities=11% Similarity=0.099 Sum_probs=42.5
Q ss_pred HHHHHHHHhhhchhhHHHHhhhH-HHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhCCCCccccHHHHHHHH
Q 010123 125 SVTFVLAFGEIIPQAICSRYGLA-VGANFVWLVRILMIICYPIAYPIGKILDAVLGHHDALFRRAQLKALV 194 (517)
Q Consensus 125 ~t~lilvFGEiiPK~la~~~~~~-ia~~~a~~v~~l~~l~~Plv~~i~~ll~~llG~~~~~~s~eEL~~lv 194 (517)
..++.+.++|..-|.+-.-|... ++.. ......+.|+.|+++|++|++=|.++-.++.|.+++=+
T Consensus 145 ~~i~~l~~aD~~a~~~q~~~glpGis~p-----h~~~~~~~pia~~~n~i~dkIPglnki~~d~~~i~kk~ 210 (407)
T TIGR00827 145 HAAVALKVADWTAPMVSNFYELEGISIP-----TGSTISYAPGIVLVDAIIEKIPGIKHWNADADTIQRRF 210 (407)
T ss_pred HHHHHHHHHHHhcHHHHHhcCCCCeeec-----chhhHhhhhHHHHHHHHHHhCcCcccCCCCHHHHhhhh
Confidence 34567889998888876655544 2211 22334557999999999998756655556666666543
No 218
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=21.19 E-value=3.9e+02 Score=22.06 Aligned_cols=10 Identities=20% Similarity=0.454 Sum_probs=6.8
Q ss_pred HHHHHHHHHH
Q 010123 43 LVLFAGIMSG 52 (517)
Q Consensus 43 LillsafFSg 52 (517)
+.++||+||-
T Consensus 33 lfiisa~lSw 42 (74)
T PF15086_consen 33 LFIISAVLSW 42 (74)
T ss_pred HHHHHHHHHH
Confidence 5667777764
Done!