BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010125
(517 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBF|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RCH|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 409 bits (1050), Expect = e-114, Method: Compositional matrix adjust.
Identities = 201/496 (40%), Positives = 294/496 (59%), Gaps = 37/496 (7%)
Query: 21 LDSEEFRRQGHMIIDFIADYYKNVEKYPVRSQVEPGYLQKVLPESAPNNPESMETILQDV 80
+++ EFRR+G ++D++A+Y + +E V VEPGYL+ ++P +AP P++ E I+ DV
Sbjct: 1 MNASEFRRRGKEMVDYVANYMEGIEGRQVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDV 60
Query: 81 QQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMD 140
++ I+PG+THW SP +FAYFP++ S L +ML +GF+W +SPA TELE ++MD
Sbjct: 61 EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMD 120
Query: 141 WLGQMLKLPKSFL--FSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGREN--------I 190
WLG+ML+LPK+FL +G GGGVIQG+ EA L L AAR +V++++ + +
Sbjct: 121 WLGKMLELPKAFLNEKAGEGGGVIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIM 180
Query: 191 SKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLI 250
KL+ Y SDQ H ++++A I G+ +K AI + ++ + +L + D GLI
Sbjct: 181 EKLVAYSSDQAHSSVERAGLIGGVKLK---AIPS--DGNFAMRASALQEALERDKAAGLI 235
Query: 251 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGAD 310
P F+ AT+GTT + D L + + + IW+HVDAAYAGSA ICPEFRH ++GVE AD
Sbjct: 236 PFFMVATLGTTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRHLLNGVEFAD 295
Query: 311 SFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSR 370
SF+ N HKW DC +WVK L + +P YLK+ +S + DY+ WQI L R
Sbjct: 296 SFNFNPHKWLLVNFDCSAMWVKKRTDLTGAFRLDPTYLKHSHQDSGLITDYRHWQIPLGR 355
Query: 371 RFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSP 430
RFRSLK+WFV R YGV L+ ++R HV ++ FE LV D RFEI +VCFR+
Sbjct: 356 RFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVILGLVCFRLKG 415
Query: 431 SPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGAT 490
S N+ N LL+ IN++ K ++ L + +RFA +
Sbjct: 416 S----------------------NKVNEALLQRINSAKKIHLVPCHLRDKFVLRFAICSR 453
Query: 491 LTEKRHVVVAWTVVQQ 506
E HV AW +++
Sbjct: 454 TVESAHVQRAWEHIKE 469
>pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 406 bits (1044), Expect = e-113, Method: Compositional matrix adjust.
Identities = 200/496 (40%), Positives = 293/496 (59%), Gaps = 37/496 (7%)
Query: 21 LDSEEFRRQGHMIIDFIADYYKNVEKYPVRSQVEPGYLQKVLPESAPNNPESMETILQDV 80
+++ EFRR+G ++D++A+Y + +E V VEPGYL+ ++P +AP P++ E I+ DV
Sbjct: 1 MNASEFRRRGKEMVDYVANYMEGIEGRQVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDV 60
Query: 81 QQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMD 140
++ I+PG+THW SP +FAYFP++ S L +ML +GF+W +SPA TELE ++MD
Sbjct: 61 EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMD 120
Query: 141 WLGQMLKLPKSFL--FSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGREN--------I 190
WLG+ML+LPK+FL +G GGGVIQG+ EA L L AAR +V++++ + +
Sbjct: 121 WLGKMLELPKAFLNEKAGEGGGVIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIM 180
Query: 191 SKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLI 250
KL+ Y SDQ H ++++A I G+ +K AI + ++ + +L + D GLI
Sbjct: 181 EKLVAYSSDQAHSSVERAGLIGGVKLK---AIPS--DGNFAMRASALQEALERDKAAGLI 235
Query: 251 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGAD 310
P F+ AT+GTT + D L + + + IW+HVDAAYAGSA ICPEFRH ++GVE AD
Sbjct: 236 PFFMVATLGTTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRHLLNGVEFAD 295
Query: 311 SFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSR 370
SF+ N H W DC +WVK L + +P YLK+ +S + DY+ WQI L R
Sbjct: 296 SFNFNPHXWLLVNFDCSAMWVKKRTDLTGAFRLDPTYLKHSHQDSGLITDYRHWQIPLGR 355
Query: 371 RFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSP 430
RFRSLK+WFV R YGV L+ ++R HV ++ FE LV D RFEI +VCFR+
Sbjct: 356 RFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVILGLVCFRLKG 415
Query: 431 SPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGAT 490
S N+ N LL+ IN++ K ++ L + +RFA +
Sbjct: 416 S----------------------NKVNEALLQRINSAKKIHLVPCHLRDKFVLRFAICSR 453
Query: 491 LTEKRHVVVAWTVVQQ 506
E HV AW +++
Sbjct: 454 TVESAHVQRAWEHIKE 469
>pdb|1JS3|A Chain A, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS3|B Chain B, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS6|A Chain A, Crystal Structure Of Dopa Decarboxylase
pdb|1JS6|B Chain B, Crystal Structure Of Dopa Decarboxylase
Length = 486
Score = 391 bits (1005), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/495 (39%), Positives = 289/495 (58%), Gaps = 37/495 (7%)
Query: 21 LDSEEFRRQGHMIIDFIADYYKNVEKYPVRSQVEPGYLQKVLPESAPNNPESMETILQDV 80
+++ +FRR+G ++D++ADY + +E V V+PGYL+ ++P +AP P++ E ILQDV
Sbjct: 1 MNASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDV 60
Query: 81 QQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMD 140
++ I+PG+THW SP +FAYFP++ S L +ML +GF+W +SPA TELE ++MD
Sbjct: 61 EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMD 120
Query: 141 WLGQMLKLPKSFLFSGNGGG--VIQGTTCEAILCTLTAARDRVLNKIGREN--------I 190
WLG+ML+LP++FL G G VIQG+ EA L L AAR +V+ ++ + +
Sbjct: 121 WLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVL 180
Query: 191 SKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLI 250
KL+ Y SDQ H ++++A I G+ +K AI + + + +L + D GLI
Sbjct: 181 EKLVAYASDQAHSSVERAGLIGGVKLK---AIPS--DGKFAMRASALQEALERDKAAGLI 235
Query: 251 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGAD 310
P F+ AT+GTT+ + D L + + + IW+HVDAAYAGSA ICPEFRH ++GVE AD
Sbjct: 236 PFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFAD 295
Query: 311 SFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSR 370
SF+ N HKW DC +WVK L + +P YLK+ S + DY+ WQ+ L R
Sbjct: 296 SFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGR 355
Query: 371 RFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSP 430
RFRSLK+WFV R YGV L+ ++R HV ++ FE V D RFE+ +VCFR+
Sbjct: 356 RFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKG 415
Query: 431 SPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGAT 490
S + N LLE IN++ K ++ L G + +RFA +
Sbjct: 416 S----------------------DGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSR 453
Query: 491 LTEKRHVVVAWTVVQ 505
E HV +AW ++
Sbjct: 454 KVESGHVRLAWEHIR 468
>pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
pdb|3K40|B Chain B, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
Length = 475
Score = 372 bits (956), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/494 (38%), Positives = 283/494 (57%), Gaps = 40/494 (8%)
Query: 21 LDSEEFRRQGHMIIDFIADYYKNVEKYPVRSQVEPGYLQKVLPESAPNNPESMETILQDV 80
+++ EF+ ++DFIA+Y +N+ + V +V+PGYL+ ++P++AP PE + ++QD+
Sbjct: 1 MEAPEFKDFAKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDI 60
Query: 81 QQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMD 140
++ I+PG+THW SP + AYFP++ S + +MLS +GF WI+SPA TELE ++MD
Sbjct: 61 ERVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMD 120
Query: 141 WLGQMLKLPKSFLFSG--NGGGVIQGTTCEAILCTLTAARDRVLNKIGREN--------I 190
WLG+ML+LP FL GGGVIQGT E+ L L A+ + L ++ + +
Sbjct: 121 WLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTIL 180
Query: 191 SKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLI 250
KL+ Y SDQ H ++++A + G+ +++ +S ++ + +L I DV GLI
Sbjct: 181 GKLVGYCSDQAHSSVERAGLLGGVK------LRSVQSENHRMRGAALEKAIEQDVAEGLI 234
Query: 251 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGAD 310
P + T+GTT A D L V + +W+HVDAAYAGSA ICPE+RH + G+E AD
Sbjct: 235 PFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESAD 294
Query: 311 SFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSR 370
SF+ N H W DC +W+KDP +V++ + +P YLK+ S DY+ WQI L R
Sbjct: 295 SFNFNPHXWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGS--APDYRHWQIPLGR 352
Query: 371 RFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSP 430
RFR+LKLWFV+R YGV NL+ +R H N AK F L D RFE+ + +VCFR+
Sbjct: 353 RFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKG 412
Query: 431 SPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGAT 490
S NE N LL+ IN G ++ A + +Y +R A +
Sbjct: 413 S----------------------NERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSR 450
Query: 491 LTEKRHVVVAWTVV 504
T+ + +W V
Sbjct: 451 FTQSEDMEYSWKEV 464
>pdb|4E1O|A Chain A, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|B Chain B, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|C Chain C, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|D Chain D, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|E Chain E, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|F Chain F, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
Length = 481
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/499 (38%), Positives = 276/499 (55%), Gaps = 46/499 (9%)
Query: 21 LDSEEFRRQGHMIIDFIADYYKNVEKYPVRSQVEPGYLQKVLPESAPNNPESMETILQDV 80
++ EE+R +G ++D+I Y V + V V+PGYL+ LPESAP +P+S ++I D+
Sbjct: 6 MEPEEYRERGREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDI 65
Query: 81 QQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMD 140
++ I+PG+ HWQSP+ AY+P+ S LG+ML+ N +GF W SSPA TELE VMD
Sbjct: 66 ERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMD 125
Query: 141 WLGQMLKLPKSFLF---SGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENIS------ 191
WL +ML LP+ FL S GGGV+Q T E+ L L AAR NKI S
Sbjct: 126 WLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARK---NKILEMKTSEPDADE 182
Query: 192 -----KLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVE 246
+L+ Y SDQ H +++KA I + +K ++ L ++L I D +
Sbjct: 183 SSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPV-----DDNFSLRGEALQKAIEEDKQ 237
Query: 247 VGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGV 306
GL+P+F+CAT+GTT + A D L L + + G+W+H+DAAYAG+A +CPEFR F+ G+
Sbjct: 238 RGLVPVFVCATLGTTGVCAFDXLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGI 297
Query: 307 EGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQI 366
E ADSF+ N KW DC WVKD L + S NP YL++ S D+ WQI
Sbjct: 298 EYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRH--ANSGVATDFMHWQI 355
Query: 367 TLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCF 426
LSRRFRS+KLWFVIR++GV NL+ +R MAK FE LV D FEI H +V F
Sbjct: 356 PLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVF 415
Query: 427 RVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFA 486
R+ + N +L+ I +G+ ++ A + IRF
Sbjct: 416 RL----------------------KGPNSLTENVLKEIAKAGRLFLIPATIQDKLIIRFT 453
Query: 487 TGATLTEKRHVVVAWTVVQ 505
+ T + ++ W +++
Sbjct: 454 VTSQFTTRDDILRDWNLIR 472
>pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
pdb|3VP6|B Chain B, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
Length = 511
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/372 (25%), Positives = 168/372 (45%), Gaps = 15/372 (4%)
Query: 68 NNPESMETILQDVQQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWIS 127
++PES+E IL D + + G+ P +F + I G GE L+S N F +
Sbjct: 71 DHPESLEQILVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEI 129
Query: 128 SPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKI-- 185
+P +E I + + +++ S +G G+ + + ++ AAR + ++
Sbjct: 130 APVFVLMEQITLKKMREIVGWS-----SKDGDGIFSPGGAISNMYSIMAARYKYFPEVKT 184
Query: 186 -GRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSD 244
G + KL+++ S+Q+H +++KA +G N IK + + P A+I
Sbjct: 185 KGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGK--IIPADFEAKILEA 242
Query: 245 VEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFID 304
+ G +P ++ AT GTT A DP++ + D+ +++ +W+HVDAA+ G + + RH ++
Sbjct: 243 KQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLN 302
Query: 305 GVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDW 364
G+E A+S + N H L C + VK+ L + YL + D D
Sbjct: 303 GIERANSVTWNPHXMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDK 362
Query: 365 QITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVF---PCHF 421
I R K W + + G + + + +A+ + + FE+VF P H
Sbjct: 363 AIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEH- 421
Query: 422 AVVCFRVSPSPV 433
VCF P +
Sbjct: 422 TNVCFWYIPQSL 433
>pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
pdb|2OKJ|B Chain B, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
Length = 504
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/372 (25%), Positives = 167/372 (44%), Gaps = 15/372 (4%)
Query: 68 NNPESMETILQDVQQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWIS 127
++PES+E IL D + + G+ P +F + I G GE L+S N F +
Sbjct: 68 DHPESLEQILVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEI 126
Query: 128 SPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKI-- 185
+P +E I + + +++ S +G G+ + + ++ AAR + ++
Sbjct: 127 APVFVLMEQITLKKMREIVGWS-----SKDGDGIFSPGGAISNMYSIMAARYKYFPEVKT 181
Query: 186 -GRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSD 244
G + KL+++ S+Q+H +++KA +G N IK + + P A+I
Sbjct: 182 KGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGK--IIPADFEAKILEA 239
Query: 245 VEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFID 304
+ G +P ++ AT GTT A DP++ + D+ +++ +W+HVDAA+ G + + RH ++
Sbjct: 240 KQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLN 299
Query: 305 GVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDW 364
G+E A+S + N H L C + VK+ L YL + D D
Sbjct: 300 GIERANSVTWNPHXMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDK 359
Query: 365 QITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVF---PCHF 421
I R K W + + G + + + +A+ + + FE+VF P H
Sbjct: 360 AIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEH- 418
Query: 422 AVVCFRVSPSPV 433
VCF P +
Sbjct: 419 TNVCFWYIPQSL 430
>pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp.
pdb|2JIS|B Chain B, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp
Length = 515
Score = 132 bits (333), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 108/439 (24%), Positives = 182/439 (41%), Gaps = 16/439 (3%)
Query: 54 EPGYLQKVLPESAPNNPESMETILQDVQQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEM 113
EP L+++L + ES + IL+ + I + P +F S G +
Sbjct: 70 EPEELKQLLDLELRSQGESQKQILERCRAVIRYSVKTGH-PRFFNQLFSGLDPHALAGRI 128
Query: 114 LSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCT 173
++ N + + +P +E V+ KL +S G G + +
Sbjct: 129 ITESLNTSQYTYEIAPVFVLMEEEVLR------KLRALVGWSSGDGIFCPGGSISNMYAV 182
Query: 174 LTAARDRV--LNKIGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYG 231
A R + G + L ++ S + H ++QK A +G+ + R +K +
Sbjct: 183 NLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKADERGK-- 240
Query: 232 LSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAG 291
+ P+ L QI G +P + AT GTT + A DPL+ + DV ++ G+W+HVDAA+ G
Sbjct: 241 MVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGG 300
Query: 292 SACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSL-STNPEYLKN 350
S + RH +DG++ ADS + N HK A L C L ++D L+ + YL
Sbjct: 301 SVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQ 360
Query: 351 KATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGD 410
+ +D D + RR LKLW + + G L + +A+ +
Sbjct: 361 QDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKR 420
Query: 411 KRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKA 470
+ FE+V F VCF P P L K ++ + LS ++ +E + +
Sbjct: 421 EGFELVMEPEFVNVCFWFVP-PSLRGKQESPDYHERLS---KVAPVLKERMVKEGSMMIG 476
Query: 471 YMTHAVLGGIYAIRFATGA 489
Y H G + + A A
Sbjct: 477 YQPHGTRGNFFRVVVANSA 495
>pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of
Glutamic Acid Decarboxylase (Gad65)
Length = 497
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 89/370 (24%), Positives = 161/370 (43%), Gaps = 14/370 (3%)
Query: 68 NNPESMETILQDVQQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWIS 127
+ P+++E IL Q + I P YF + + G + L+S N F +
Sbjct: 64 DQPQNLEEILMHCQTTLKYAIKTGH-PRYFNQLSTGLDMVGLAADWLTSTANTNMFTYEI 122
Query: 128 SPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKI-- 185
+P LE + + + +++ P G+G G+ + + + AR ++ ++
Sbjct: 123 APVFVLLEYVTLKKMREIIGWP-----GGSGDGIFSPGGAISNMYAMMIARFKMFPEVKE 177
Query: 186 -GRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSD 244
G + +LI + S+ +H +L+K A +GI + IK + + P L +I
Sbjct: 178 KGMAALPRLIAFTSEHSHFSLKKGAAALGIGTDSVILIKCDERGK--MIPSDLERRILEA 235
Query: 245 VEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFID 304
+ G +P + AT GTT A DPL + D+ K++ IW+HVDAA+ G + + + +
Sbjct: 236 KQKGFVPFLVSATAGTTVYGAFDPLLAVADICKKYKIWMHVDAAWGGGLLMSRKHKWKLS 295
Query: 305 GVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDW 364
GVE A+S + N H L C L V++ + + + YL + D D
Sbjct: 296 GVERANSVTWNPHXMMGVPLQCSALLVREEGLMQNCNQMHASYLFQQDKHYDLSYDTGDK 355
Query: 365 QITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVF---PCHF 421
+ R KLW + R G + + +A+ ++ + +E+VF P H
Sbjct: 356 ALQCGRHVDVFKLWLMWRAKGTTGFEAHVDKCLELAEYLYNIIKNREGYEMVFDGKPQHT 415
Query: 422 AVVCFRVSPS 431
V + + PS
Sbjct: 416 NVCFWYIPPS 425
>pdb|2QMA|A Chain A, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
pdb|2QMA|B Chain B, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
Length = 497
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 106/450 (23%), Positives = 188/450 (41%), Gaps = 51/450 (11%)
Query: 51 SQVEPGYLQKVLPESAPNNPES-METILQDVQQHIVPGITHWQSPNYFAYFPSSGSIAGF 109
S +P L+ + +N + +++++ DV + + Q P+ A+ +
Sbjct: 57 SGXDPKALEDAINAVDLDNKNAPLKSVIDDVAELVAKNAIFTQHPDCIAHLHTPPLXPAV 116
Query: 110 LGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEA 169
E + N +W + +AT +E V++WL L S G+ ++
Sbjct: 117 AAEAXIAALNQSXDSWDQASSATYVEQKVVNWLCDKYDL------SEKADGIFTSGGTQS 170
Query: 170 ILCTLTAARDRVLNKIGRENI---------SKLIVYGSDQTHCALQKAAQIVGIDVKNFR 220
L ARD + +K+ +I KL + S ++H +QK+A G+ K
Sbjct: 171 NQXGLXLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWXGLGEKAVX 230
Query: 221 AIKTTKSSSYGLSP-DSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQF 279
+ + ++ D ++AQ ++ GLIP + T GTT A+D L + D A +
Sbjct: 231 TVDANADGTXDITKLDEVIAQAKAE---GLIPFAIVGTAGTTDHGAIDDLDFIADXAVKH 287
Query: 280 GIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVS 339
W HVD AY G A I + + GVE A S S++ HK F+ T+ C L V D ++
Sbjct: 288 DXWXHVDGAYGG-ALILSSHKSRLKGVERAHSISVDFHKLFYQTISCGALLVND-KSNFK 345
Query: 340 SLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANL----RHFLRS 395
L + +YL + E +VD I ++RF +LK++ +N G L H L
Sbjct: 346 FLLHHADYLNREHDELPNLVDK---SIATTKRFDALKVFXTXQNVGPKALGDXYDHLLAQ 402
Query: 396 HVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINE 455
+ +A + + +FE++ + V FR + E ++E
Sbjct: 403 TLEVAD----XIRTNDQFELLAEPSLSTVLFRAT------------------HETADLDE 440
Query: 456 FNRELLESINASGKAYMTHAVLGGIYAIRF 485
N+ L G A + ++ G A++F
Sbjct: 441 LNKALRLEALTRGIAVLGETIVDGKTALKF 470
>pdb|3F9T|A Chain A, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
pdb|3F9T|B Chain B, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
Length = 397
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 259 GTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE-------GADS 311
GTT + +D ++ L +AK+ I++HVDAA+ G + ++ GV G DS
Sbjct: 180 GTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSLGVDS 239
Query: 312 FSLNAHK 318
+++ HK
Sbjct: 240 ITIDPHK 246
>pdb|3MAF|B Chain B, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 84/229 (36%), Gaps = 41/229 (17%)
Query: 127 SSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTC----EAILCTLTAARDRVL 182
S+P +L + +++ + L GG + GT E++L + RD
Sbjct: 130 SNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWAR 189
Query: 183 NKIGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQI- 241
G ++ + H A KAAQ GI + ++T + Y ++ I
Sbjct: 190 ATKGITAPEAVVPVSA---HAAFDKAAQYFGIKL-----VRTPLDADYRADVAAMREAIT 241
Query: 242 -NSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICP--- 297
N+ V G P + VDP+ + +A + GI HVDA G I P
Sbjct: 242 PNTVVVAGSAPGYPHGV--------VDPIPEIAALAAEHGIGCHVDACLGG--FILPWAE 291
Query: 298 ---------EFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRAL 337
+FR +EG S S + HK+ + + + P L
Sbjct: 292 RLGYPVPPFDFR-----LEGVTSVSADTHKYGYGAKGTSVILYRRPDLL 335
>pdb|3MBB|A Chain A, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
pdb|3MBB|B Chain B, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
Length = 514
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 82/227 (36%), Gaps = 37/227 (16%)
Query: 127 SSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTC----EAILCTLTAARDRVL 182
S+P +L + +++ + L GG + GT E++L + RD
Sbjct: 126 SNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWAR 185
Query: 183 NKIGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQIN 242
G ++ + H A KAAQ GI + ++T + Y ++ I
Sbjct: 186 ATKGITAPEAVVPVSA---HAAFDKAAQYFGIKL-----VRTPLDADYRADVAAMREAIT 237
Query: 243 SDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICP----- 297
+ V + + VDP+ + +A + GI HVDA G I P
Sbjct: 238 PNTVV------VAGSAPGXPHGVVDPIPEIAALAAEHGIGCHVDACLGG--FILPWAERL 289
Query: 298 -------EFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRAL 337
+FR +EG S S + HK+ + + + P L
Sbjct: 290 GYPVPPFDFR-----LEGVTSVSADTHKYGYGAKGTSVILYRRPDLL 331
>pdb|1G98|A Chain A, Crystal Structure Analysis Of Rabbit Phosphoglucose
Isomerase Complexed With 5-Phosphoarabinonate, A
Transition State Analogue
pdb|1G98|B Chain B, Crystal Structure Analysis Of Rabbit Phosphoglucose
Isomerase Complexed With 5-Phosphoarabinonate, A
Transition State Analogue
pdb|1HOX|A Chain A, Crystal Structure Of Rabbit Phosphoglucose Isomerase
Complexed With Fructose-6-Phosphate
pdb|1HOX|B Chain B, Crystal Structure Of Rabbit Phosphoglucose Isomerase
Complexed With Fructose-6-Phosphate
pdb|1HM5|A Chain A, Crystal Structure Analysis Of The Rabbit D-Glucose
6-Phosphate Isomerase (No Ligand Bound)
pdb|1HM5|B Chain B, Crystal Structure Analysis Of The Rabbit D-Glucose
6-Phosphate Isomerase (No Ligand Bound)
pdb|1XTB|A Chain A, Crystal Structure Of Rabbit Phosphoglucose Isomerase
Complexed With Sorbitol-6-Phosphate
pdb|1XTB|B Chain B, Crystal Structure Of Rabbit Phosphoglucose Isomerase
Complexed With Sorbitol-6-Phosphate
Length = 558
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 83/212 (39%), Gaps = 45/212 (21%)
Query: 263 ITAVDPLKPLCDVAKQFGIWVHVDAAYAGS--ACICPEFRHFIDG-----VEGADSFSLN 315
+ + LKP + ++D + AC+ PE FI + + +
Sbjct: 165 LMVTEALKPYSSGGPRVWFVSNIDGTHIAKTLACLNPESSLFIIASKTFTTQETITNAKT 224
Query: 316 AHKWFFATLDCCCLWVKDPRALVS---SLSTNPEYLKNKATESMQVVDYKDWQITLSRRF 372
A WF L KDP + +LSTN +K + + ++ DW + R+
Sbjct: 225 AKDWFL-------LSAKDPSTVAKHFVALSTNTAKVKEFGIDPQNMFEFWDW---VGGRY 274
Query: 373 RSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSP-- 430
LW I G++ + HV FE+L+SG H+ FR +P
Sbjct: 275 ---SLWSAI---GLS-----IALHVGFDN-FEQLLSG---------AHWMDQHFRTTPLE 313
Query: 431 --SPVLMDKLKTKYVNCLLSEEEQINEFNREL 460
+PVL+ L Y+NC E + + +++ L
Sbjct: 314 KNAPVLLAMLGIWYINCFGCETQAVLPYDQYL 345
>pdb|1DQR|A Chain A, Crystal Structure Of Rabbit Phosphoglucose Isomerase, A
Glycolytic Enzyme That Moonlights As Neuroleukin,
Autocrine Motility Factor, And Differentiation Mediator
pdb|1DQR|B Chain B, Crystal Structure Of Rabbit Phosphoglucose Isomerase, A
Glycolytic Enzyme That Moonlights As Neuroleukin,
Autocrine Motility Factor, And Differentiation Mediator
pdb|1KOJ|A Chain A, Crystal Structure Of Rabbit Phosphoglucose Isomerase
Complexed With 5-Phospho-D-Arabinonohydroxamic Acid
pdb|1KOJ|B Chain B, Crystal Structure Of Rabbit Phosphoglucose Isomerase
Complexed With 5-Phospho-D-Arabinonohydroxamic Acid
Length = 557
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 83/212 (39%), Gaps = 45/212 (21%)
Query: 263 ITAVDPLKPLCDVAKQFGIWVHVDAAYAGS--ACICPEFRHFIDG-----VEGADSFSLN 315
+ + LKP + ++D + AC+ PE FI + + +
Sbjct: 164 LMVTEALKPYSSGGPRVWFVSNIDGTHIAKTLACLNPESSLFIIASKTFTTQETITNAKT 223
Query: 316 AHKWFFATLDCCCLWVKDPRALVS---SLSTNPEYLKNKATESMQVVDYKDWQITLSRRF 372
A WF L KDP + +LSTN +K + + ++ DW + R+
Sbjct: 224 AKDWFL-------LSAKDPSTVAKHFVALSTNTAKVKEFGIDPQNMFEFWDW---VGGRY 273
Query: 373 RSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSP-- 430
LW I G++ + HV FE+L+SG H+ FR +P
Sbjct: 274 ---SLWSAI---GLS-----IALHVGFDN-FEQLLSG---------AHWMDQHFRTTPLE 312
Query: 431 --SPVLMDKLKTKYVNCLLSEEEQINEFNREL 460
+PVL+ L Y+NC E + + +++ L
Sbjct: 313 KNAPVLLAMLGIWYINCFGCETQAVLPYDQYL 344
>pdb|1N8T|A Chain A, The Crystal Structure Of Phosphoglucose Isomerase From
Rabbit Muscle
pdb|1N8T|B Chain B, The Crystal Structure Of Phosphoglucose Isomerase From
Rabbit Muscle
Length = 557
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 85/216 (39%), Gaps = 53/216 (24%)
Query: 263 ITAVDPLKPLCDVAKQFGIWVHVDAAYAGS--ACICPEFRHFI---------DGVEGADS 311
+ + LKP + ++D + AC+ PE FI + + A++
Sbjct: 164 LMVTEALKPYSSGGPRVWFVSNIDGTHIAKTLACLNPESSLFIIASKTFTTQETITNAET 223
Query: 312 FSLNAHKWFFATLDCCCLWVKDPRALVS---SLSTNPEYLKNKATESMQVVDYKDWQITL 368
A WF L KDP + +LSTN +K + + ++ DW +
Sbjct: 224 ----AKDWFL-------LSAKDPSTVAKHFVALSTNTAKVKEFGIDPQNMFEFWDW---V 269
Query: 369 SRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRV 428
R+ LW I G++ + HV FE+L+SG H+ FR
Sbjct: 270 GGRY---SLWSAI---GLS-----IALHVGFDN-FEQLLSG---------AHWMDQHFRT 308
Query: 429 SP----SPVLMDKLKTKYVNCLLSEEEQINEFNREL 460
+P +PVL+ L Y+NC E + + +++ L
Sbjct: 309 TPLEKNAPVLLAMLGIWYINCFGCETQAVLPYDQYL 344
>pdb|3MAF|A Chain A, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 83/229 (36%), Gaps = 41/229 (17%)
Query: 127 SSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTC----EAILCTLTAARDRVL 182
S+P +L + +++ + L GG + GT E++L + RD
Sbjct: 130 SNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWAR 189
Query: 183 NKIGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQI- 241
G ++ + H A KAAQ GI + ++T + Y ++ I
Sbjct: 190 ATKGITAPEAVVPVSA---HAAFDKAAQYFGIKL-----VRTPLDADYRADVAAMREAIT 241
Query: 242 -NSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICP--- 297
N+ V G P + VDP+ + +A + GI HVDA G I P
Sbjct: 242 PNTVVVAGSAPGYPHGV--------VDPIPEIAALAAEHGIGCHVDACLGG--FILPWAE 291
Query: 298 ---------EFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRAL 337
+FR +EG S S + H + + + + P L
Sbjct: 292 RLGYPVPPFDFR-----LEGVTSVSADTHXYGYGAKGTSVILYRRPDLL 335
>pdb|3MAU|A Chain A, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|B Chain B, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|C Chain C, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|D Chain D, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
Length = 514
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 83/229 (36%), Gaps = 41/229 (17%)
Query: 127 SSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTC----EAILCTLTAARDRVL 182
S+P +L + +++ + L GG + GT E++L + RD
Sbjct: 126 SNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWAR 185
Query: 183 NKIGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQI- 241
G ++ + H A KAAQ GI + ++T + Y ++ I
Sbjct: 186 ATKGITAPEAVVPVSA---HAAFDKAAQYFGIKL-----VRTPLDADYRADVAAMREAIT 237
Query: 242 -NSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICP--- 297
N+ V G P + VDP+ + +A + GI HVDA G I P
Sbjct: 238 PNTVVVAGSAPGYPHGV--------VDPIPEIAALAAEHGIGCHVDACLGG--FILPWAE 287
Query: 298 ---------EFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRAL 337
+FR +EG S S + H + + + + P L
Sbjct: 288 RLGYPVPPFDFR-----LEGVTSVSADTHAYGYGAKGTSVILYRRPDLL 331
>pdb|3MAD|A Chain A, Crystal Structure Of Stspl (Symmetric Form)
pdb|3MAD|B Chain B, Crystal Structure Of Stspl (Symmetric Form)
Length = 514
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 83/229 (36%), Gaps = 41/229 (17%)
Query: 127 SSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTC----EAILCTLTAARDRVL 182
S+P +L + +++ + L GG + GT E++L + RD
Sbjct: 126 SNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWAR 185
Query: 183 NKIGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQI- 241
G ++ + H A KAAQ GI + ++T + Y ++ I
Sbjct: 186 ATKGITAPEAVVPVSA---HAAFDKAAQYFGIKL-----VRTPLDADYRADVAAMREAIT 237
Query: 242 -NSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICP--- 297
N+ V G P + VDP+ + +A + GI HVDA G I P
Sbjct: 238 PNTVVVAGSAPGYPHGV--------VDPIPEIAALAAEHGIGCHVDACLGG--FILPWAE 287
Query: 298 ---------EFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRAL 337
+FR +EG S S + H + + + + P L
Sbjct: 288 RLGYPVPPFDFR-----LEGVTSVSADTHXYGYGAKGTSVILYRRPDLL 331
>pdb|1PMM|A Chain A, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|B Chain B, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|C Chain C, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|D Chain D, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|E Chain E, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|F Chain F, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMO|A Chain A, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|B Chain B, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|C Chain C, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|D Chain D, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|E Chain E, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|F Chain F, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|2DGL|A Chain A, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|B Chain B, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|C Chain C, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|D Chain D, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|E Chain E, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|F Chain F, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGM|A Chain A, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|B Chain B, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|C Chain C, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|D Chain D, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|E Chain E, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|F Chain F, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|3FZ6|A Chain A, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|B Chain B, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|C Chain C, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|D Chain D, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|E Chain E, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|F Chain F, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ7|A Chain A, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|B Chain B, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|C Chain C, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|D Chain D, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|E Chain E, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|F Chain F, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ8|A Chain A, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|B Chain B, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|C Chain C, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|D Chain D, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|E Chain E, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|F Chain F, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
Length = 466
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 22/117 (18%)
Query: 247 VGLIPLFLCATIGTTAITAVDPLKPLCDVAKQF------GIWVHVDAAYAG------SAC 294
+G++P F G T + +PL D +F I +H+DAA G +
Sbjct: 203 IGVVPTF-----GVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPD 257
Query: 295 ICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNK 351
I +FR + S S + HK+ A L C + +D AL L N +YL +
Sbjct: 258 IVWDFR-----LPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQ 309
>pdb|1XEY|A Chain A, Crystal Structure Of The Complex Of Escherichia Coli Gada
With Glutarate At 2.05 A Resolution
pdb|1XEY|B Chain B, Crystal Structure Of The Complex Of Escherichia Coli Gada
With Glutarate At 2.05 A Resolution
Length = 466
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 22/117 (18%)
Query: 247 VGLIPLFLCATIGTTAITAVDPLKPLCDVAKQF------GIWVHVDAAYAG------SAC 294
+G++P F G T + +PL D +F I +H+DAA G +
Sbjct: 203 IGVVPTF-----GVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPD 257
Query: 295 ICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNK 351
I +FR + S S + HK+ A L C + +D AL L N +YL +
Sbjct: 258 IVWDFR-----LPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQ 309
>pdb|2DGK|A Chain A, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|B Chain B, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|C Chain C, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|D Chain D, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|E Chain E, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|F Chain F, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
Length = 452
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 22/117 (18%)
Query: 247 VGLIPLFLCATIGTTAITAVDPLKPLCDVAKQF------GIWVHVDAAYAG------SAC 294
+G++P F G T + +PL D +F I +H+DAA G +
Sbjct: 189 IGVVPTF-----GVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPD 243
Query: 295 ICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNK 351
I +FR + S S + HK+ A L C + +D AL L N +YL +
Sbjct: 244 IVWDFR-----LPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQ 295
>pdb|2FM1|A Chain A, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|B Chain B, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|C Chain C, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|D Chain D, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
Length = 355
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 263 ITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIC 296
+ ++ +K +C +AK+ GI VH+D A +A I
Sbjct: 157 VVPLENIKEICTIAKEHGINVHIDGARIFNASIA 190
>pdb|1JG8|A Chain A, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|B Chain B, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|C Chain C, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|D Chain D, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1M6S|A Chain A, Crystal Structure Of Threonine Aldolase
pdb|1M6S|B Chain B, Crystal Structure Of Threonine Aldolase
pdb|1M6S|C Chain C, Crystal Structure Of Threonine Aldolase
pdb|1M6S|D Chain D, Crystal Structure Of Threonine Aldolase
Length = 347
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 263 ITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIC 296
+ ++ +K +C +AK+ GI VH+D A +A I
Sbjct: 149 VVPLENIKEICTIAKEHGINVHIDGARIFNASIA 182
>pdb|1LW4|A Chain A, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW4|B Chain B, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW4|C Chain C, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW4|D Chain D, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW5|A Chain A, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
pdb|1LW5|B Chain B, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
pdb|1LW5|C Chain C, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
pdb|1LW5|D Chain D, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
Length = 347
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 263 ITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIC 296
+ ++ +K +C +AK+ GI VH+D A +A I
Sbjct: 149 VVPLENIKEICTIAKEHGINVHIDGARIFNASIA 182
>pdb|1VK4|A Chain A, Crystal Structure Of Pfkb Carbohydrate Kinase (tm0415)
From Thermotoga Maritima At 1.91 A Resolution
Length = 298
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 16/79 (20%)
Query: 158 GGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQIVGIDVK 217
GGGV+ G AI +L + +V+ K RE++SK + K+ + I+
Sbjct: 36 GGGVVXG----AITSSLLGVKTKVITKCTREDVSKFSFLRDNGVEVVFLKSPRTTSIE-- 89
Query: 218 NFRAIKTTKSSSYGLSPDS 236
+ YG PD+
Sbjct: 90 ----------NRYGSDPDT 98
>pdb|2BWN|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWN|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWN|D Chain D, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWN|E Chain E, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWO|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
Length = 401
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 268 PLKPLCDVAKQFGIWVHVDAAYA 290
P+K +CD+A++FG ++D +A
Sbjct: 196 PIKEICDIAEEFGALTYIDEVHA 218
>pdb|2BWO|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
pdb|2BWO|D Chain D, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
pdb|2BWO|E Chain E, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
pdb|2BWP|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
pdb|2BWP|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
pdb|2BWP|D Chain D, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
pdb|2BWP|E Chain E, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
Length = 401
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 268 PLKPLCDVAKQFGIWVHVDAAYA 290
P+K +CD+A++FG ++D +A
Sbjct: 196 PIKEICDIAEEFGALTYIDEVHA 218
>pdb|3B59|A Chain A, Crystal Structure Of The Mn(ii)-bound Glyoxalase From
Novosphingobium Aromaticivorans
pdb|3B59|B Chain B, Crystal Structure Of The Mn(ii)-bound Glyoxalase From
Novosphingobium Aromaticivorans
pdb|3B59|C Chain C, Crystal Structure Of The Mn(ii)-bound Glyoxalase From
Novosphingobium Aromaticivorans
pdb|3B59|D Chain D, Crystal Structure Of The Mn(ii)-bound Glyoxalase From
Novosphingobium Aromaticivorans
pdb|3B59|E Chain E, Crystal Structure Of The Mn(ii)-bound Glyoxalase From
Novosphingobium Aromaticivorans
pdb|3B59|F Chain F, Crystal Structure Of The Mn(ii)-bound Glyoxalase From
Novosphingobium Aromaticivorans
Length = 310
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 204 ALQKAAQIVGIDVKNFRAIKTTKSSSYGL---SPDSLMAQINSDVEVG 248
AL+ + + G V + A+ T YG SPD L+ +++SDV G
Sbjct: 80 ALRASVEAAGCKVASEPAVLATPGGGYGFRFFSPDGLLFEVSSDVAKG 127
>pdb|1AX4|A Chain A, Tryptophanase From Proteus Vulgaris
pdb|1AX4|B Chain B, Tryptophanase From Proteus Vulgaris
pdb|1AX4|C Chain C, Tryptophanase From Proteus Vulgaris
pdb|1AX4|D Chain D, Tryptophanase From Proteus Vulgaris
Length = 467
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 238 MAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAA 288
+AQ +D V ++ C + G ++ + LK + ++AKQ GI+V +D+A
Sbjct: 176 IAQHGADNIVAIVSTVTCNSAGGQPVSMSN-LKEVYEIAKQHGIFVVMDSA 225
>pdb|3PI6|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
Length = 301
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 71 ESMETILQDVQQHIVPGITHW 91
E M+ +DV+ H++PG HW
Sbjct: 254 EQMKAYAEDVEGHVLPGCGHW 274
>pdb|3KD2|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif
Length = 301
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 71 ESMETILQDVQQHIVPGITHW 91
E M+ +DV+ H++PG HW
Sbjct: 254 EQMKAYAEDVEGHVLPGCGHW 274
>pdb|3KDA|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
Length = 301
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 71 ESMETILQDVQQHIVPGITHW 91
E M+ +DV+ H++PG HW
Sbjct: 254 EQMKAYAEDVEGHVLPGCGHW 274
>pdb|4EU1|A Chain A, Structure Of A Mitochondrial Aspartate Aminotransferase
From Trypanosoma Brucei
pdb|4EU1|B Chain B, Structure Of A Mitochondrial Aspartate Aminotransferase
From Trypanosoma Brucei
Length = 409
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 228 SSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDA 287
++ GL+ ++ ++ E +I + CA T D + +CDV K+ VD
Sbjct: 164 ATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDM 223
Query: 288 AYAGSACICPEF-----RHFIDGVEG---ADSFSLN 315
AY G A ++ RH +D V A SFS N
Sbjct: 224 AYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSXN 259
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,333,442
Number of Sequences: 62578
Number of extensions: 629658
Number of successful extensions: 1489
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1440
Number of HSP's gapped (non-prelim): 38
length of query: 517
length of database: 14,973,337
effective HSP length: 103
effective length of query: 414
effective length of database: 8,527,803
effective search space: 3530510442
effective search space used: 3530510442
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)