Query 010125
Match_columns 517
No_of_seqs 315 out of 3085
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 20:27:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010125.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010125hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e1o_A HDC, histidine decarbox 100.0 3.1E-75 1.1E-79 617.0 52.4 467 18-513 3-480 (481)
2 3k40_A Aromatic-L-amino-acid d 100.0 2.7E-75 9.2E-80 616.0 48.9 464 21-514 1-474 (475)
3 1js3_A DDC;, DOPA decarboxylas 100.0 1.4E-69 5E-74 574.9 50.4 467 21-514 1-477 (486)
4 3vp6_A Glutamate decarboxylase 100.0 2.1E-68 7.3E-73 568.1 55.5 478 20-512 18-506 (511)
5 2okj_A Glutamate decarboxylase 100.0 3.5E-65 1.2E-69 543.6 53.6 476 21-511 16-502 (504)
6 2jis_A Cysteine sulfinic acid 100.0 2.7E-64 9.1E-69 538.0 51.2 480 14-510 27-514 (515)
7 2qma_A Diaminobutyrate-pyruvat 100.0 3.5E-63 1.2E-67 527.2 49.2 459 20-511 28-496 (497)
8 2dgk_A GAD-beta, GADB, glutama 100.0 5.3E-49 1.8E-53 413.3 38.0 411 55-514 7-437 (452)
9 3hbx_A GAD 1, glutamate decarb 100.0 2.5E-46 8.6E-51 397.4 37.7 414 49-514 14-447 (502)
10 3mc6_A Sphingosine-1-phosphate 100.0 5.3E-41 1.8E-45 356.6 30.1 395 63-513 35-439 (497)
11 3mad_A Sphingosine-1-phosphate 100.0 2.5E-40 8.4E-45 352.9 32.5 394 64-514 69-472 (514)
12 3bc8_A O-phosphoseryl-tRNA(SEC 100.0 2.7E-38 9.2E-43 324.5 25.1 382 64-515 21-447 (450)
13 3f9t_A TDC, L-tyrosine decarbo 100.0 1.3E-35 4.4E-40 304.5 35.7 381 65-509 4-396 (397)
14 2z67_A O-phosphoseryl-tRNA(SEC 100.0 2.1E-36 7.1E-41 317.7 28.2 395 21-507 29-454 (456)
15 1wyu_B Glycine dehydrogenase s 100.0 1.3E-30 4.6E-35 274.8 31.3 395 55-509 31-439 (474)
16 3nnk_A Ureidoglycine-glyoxylat 100.0 6.1E-29 2.1E-33 256.6 29.7 358 91-512 9-391 (411)
17 1wyu_A Glycine dehydrogenase ( 100.0 4.2E-28 1.4E-32 253.2 32.6 374 54-507 30-436 (438)
18 3isl_A Purine catabolism prote 100.0 9.6E-29 3.3E-33 255.5 26.4 358 91-512 7-391 (416)
19 4hvk_A Probable cysteine desul 100.0 3.2E-28 1.1E-32 248.0 29.8 342 96-513 3-375 (382)
20 2dr1_A PH1308 protein, 386AA l 100.0 6.4E-28 2.2E-32 246.6 28.2 353 94-514 20-382 (386)
21 3kgw_A Alanine-glyoxylate amin 100.0 7.6E-28 2.6E-32 246.5 26.6 355 93-512 21-389 (393)
22 2huf_A Alanine glyoxylate amin 100.0 1.2E-27 4E-32 245.5 27.7 352 93-513 17-385 (393)
23 4eb5_A Probable cysteine desul 100.0 1.7E-27 5.7E-32 243.2 28.4 342 96-513 3-375 (382)
24 3hl2_A O-phosphoseryl-tRNA(SEC 100.0 3.6E-27 1.2E-31 238.4 29.0 324 132-514 116-464 (501)
25 2yrr_A Aminotransferase, class 100.0 1.5E-27 5.1E-32 240.5 25.1 341 99-509 4-351 (353)
26 2z9v_A Aspartate aminotransfer 100.0 5E-27 1.7E-31 240.8 29.2 351 93-512 8-372 (392)
27 3zrp_A Serine-pyruvate aminotr 100.0 9E-28 3.1E-32 245.2 23.5 346 101-512 8-364 (384)
28 3lvm_A Cysteine desulfurase; s 100.0 1.7E-26 5.9E-31 239.3 33.3 344 95-513 24-401 (423)
29 1vjo_A Alanine--glyoxylate ami 100.0 3.3E-27 1.1E-31 242.3 27.1 345 96-508 36-392 (393)
30 3e9k_A Kynureninase; kynurenin 100.0 2.7E-27 9.1E-32 249.0 25.2 357 95-511 69-461 (465)
31 2ch1_A 3-hydroxykynurenine tra 100.0 3.6E-27 1.2E-31 242.2 25.1 358 92-514 15-386 (396)
32 3ffr_A Phosphoserine aminotran 100.0 2.1E-27 7.3E-32 240.5 22.8 341 96-507 5-360 (362)
33 1iug_A Putative aspartate amin 100.0 5.7E-27 1.9E-31 236.5 25.5 338 100-512 6-349 (352)
34 1t3i_A Probable cysteine desul 100.0 1.3E-26 4.4E-31 239.7 28.1 358 95-512 30-414 (420)
35 1eg5_A Aminotransferase; PLP-d 100.0 5.6E-26 1.9E-30 231.9 31.6 346 95-515 3-380 (384)
36 3f0h_A Aminotransferase; RER07 99.9 2.2E-26 7.5E-31 234.6 25.3 343 99-509 23-372 (376)
37 1kmj_A Selenocysteine lyase; p 99.9 8E-26 2.7E-30 232.5 29.3 355 95-511 25-405 (406)
38 3dzz_A Putative pyridoxal 5'-p 99.9 2.7E-26 9.3E-31 235.1 25.0 335 107-511 42-389 (391)
39 3vax_A Putative uncharacterize 99.9 1.3E-26 4.6E-31 238.3 20.5 350 93-509 20-398 (400)
40 1j32_A Aspartate aminotransfer 99.9 4.4E-26 1.5E-30 233.6 23.2 332 107-511 45-387 (388)
41 1m32_A 2-aminoethylphosphonate 99.9 1.1E-25 3.7E-30 228.1 25.1 314 133-509 37-363 (366)
42 1elu_A L-cysteine/L-cystine C- 99.9 5.7E-26 1.9E-30 232.5 22.6 315 132-507 58-388 (390)
43 2bkw_A Alanine-glyoxylate amin 99.9 8.9E-26 3.1E-30 230.6 23.9 357 94-510 4-383 (385)
44 1svv_A Threonine aldolase; str 99.9 2E-25 6.9E-30 225.6 25.9 333 96-510 17-357 (359)
45 3cai_A Possible aminotransfera 99.9 1.1E-25 3.8E-30 231.9 24.5 343 94-507 27-405 (406)
46 1v72_A Aldolase; PLP-dependent 99.9 6.9E-26 2.4E-30 228.9 21.8 303 131-511 41-353 (356)
47 1xi9_A Putative transaminase; 99.9 1.9E-25 6.7E-30 230.5 24.0 330 108-512 57-404 (406)
48 2w8t_A SPT, serine palmitoyltr 99.9 2.4E-24 8.2E-29 223.9 32.0 301 132-513 108-417 (427)
49 2gb3_A Aspartate aminotransfer 99.9 2.3E-25 7.9E-30 230.2 22.4 328 108-513 59-404 (409)
50 2e7j_A SEP-tRNA:Cys-tRNA synth 99.9 8.6E-26 2.9E-30 229.7 18.8 300 132-510 52-369 (371)
51 1gd9_A Aspartate aminotransfer 99.9 3.1E-25 1.1E-29 227.4 22.8 330 107-510 41-385 (389)
52 4dq6_A Putative pyridoxal phos 99.9 6.5E-25 2.2E-29 224.8 24.8 329 107-508 47-390 (391)
53 1c7n_A Cystalysin; transferase 99.9 1.3E-24 4.4E-29 223.5 25.7 334 107-513 46-395 (399)
54 3nra_A Aspartate aminotransfer 99.9 2.6E-25 8.9E-30 229.1 20.1 318 124-512 73-406 (407)
55 1qz9_A Kynureninase; kynurenin 99.9 1.8E-24 6.2E-29 223.6 26.3 312 133-511 71-402 (416)
56 1o4s_A Aspartate aminotransfer 99.9 8.4E-25 2.9E-29 224.4 23.3 324 107-509 56-387 (389)
57 3l8a_A METC, putative aminotra 99.9 9.6E-25 3.3E-29 226.5 22.8 332 108-509 77-420 (421)
58 2zc0_A Alanine glyoxylate tran 99.9 2.6E-24 8.8E-29 221.9 25.6 337 106-513 50-406 (407)
59 3tqx_A 2-amino-3-ketobutyrate 99.9 9.1E-24 3.1E-28 216.9 28.7 300 132-511 87-396 (399)
60 3a9z_A Selenocysteine lyase; P 99.9 2.6E-24 9E-29 223.7 24.9 358 93-512 18-429 (432)
61 3kax_A Aminotransferase, class 99.9 3.3E-24 1.1E-28 218.9 25.2 329 107-508 39-382 (383)
62 1d2f_A MALY protein; aminotran 99.9 9.9E-24 3.4E-28 216.3 27.6 332 107-511 43-389 (390)
63 3piu_A 1-aminocyclopropane-1-c 99.9 9.8E-24 3.4E-28 219.7 26.7 325 124-512 81-433 (435)
64 3e77_A Phosphoserine aminotran 99.9 1.5E-24 5E-29 220.2 19.7 344 97-510 16-374 (377)
65 3dyd_A Tyrosine aminotransfera 99.9 4.9E-24 1.7E-28 221.6 24.1 342 106-512 72-425 (427)
66 1u08_A Hypothetical aminotrans 99.9 6E-24 2.1E-28 217.6 24.1 329 107-506 45-385 (386)
67 1vp4_A Aminotransferase, putat 99.9 6.2E-24 2.1E-28 220.6 24.2 341 107-516 60-423 (425)
68 1iay_A ACC synthase 2, 1-amino 99.9 2.8E-23 9.7E-28 215.7 28.8 327 123-509 77-425 (428)
69 3tcm_A Alanine aminotransferas 99.9 1.8E-23 6E-28 221.7 27.3 339 121-516 126-499 (500)
70 3m5u_A Phosphoserine aminotran 99.9 3E-24 1E-28 217.1 20.2 339 95-510 5-359 (361)
71 3g0t_A Putative aminotransfera 99.9 1.4E-23 4.8E-28 218.4 26.0 344 107-509 59-435 (437)
72 1v2d_A Glutamine aminotransfer 99.9 3.6E-24 1.2E-28 218.9 20.9 325 107-515 40-375 (381)
73 1fc4_A 2-amino-3-ketobutyrate 99.9 4.1E-23 1.4E-27 212.4 28.8 302 133-511 90-397 (401)
74 3h14_A Aminotransferase, class 99.9 2.3E-23 7.8E-28 213.7 26.7 327 107-511 46-382 (391)
75 3aow_A Putative uncharacterize 99.9 4.7E-23 1.6E-27 215.5 29.4 338 106-513 92-447 (448)
76 2fnu_A Aminotransferase; prote 99.9 8.6E-24 2.9E-28 215.2 23.1 334 107-511 12-372 (375)
77 3a2b_A Serine palmitoyltransfe 99.9 2.1E-23 7.3E-28 214.4 25.9 302 129-512 84-393 (398)
78 1b9h_A AHBA synthase, protein 99.9 4.9E-23 1.7E-27 211.0 28.3 332 109-510 18-387 (388)
79 2o0r_A RV0858C (N-succinyldiam 99.9 5.4E-24 1.9E-28 220.0 20.8 334 108-512 41-397 (411)
80 3ke3_A Putative serine-pyruvat 99.9 1.7E-23 5.9E-28 214.0 24.2 325 128-512 30-377 (379)
81 3op7_A Aminotransferase class 99.9 5.4E-24 1.9E-28 217.0 20.1 312 121-513 55-373 (375)
82 1bw0_A TAT, protein (tyrosine 99.9 1.7E-23 5.7E-28 216.5 23.4 345 107-513 52-415 (416)
83 1b5p_A Protein (aspartate amin 99.9 1.1E-23 3.8E-28 215.8 21.0 325 108-508 47-382 (385)
84 1rv3_A Serine hydroxymethyltra 99.9 3.5E-24 1.2E-28 226.1 17.5 346 106-510 56-430 (483)
85 2zyj_A Alpha-aminodipate amino 99.9 3.9E-23 1.3E-27 212.5 24.7 327 107-513 49-395 (397)
86 3ffh_A Histidinol-phosphate am 99.9 2.3E-22 8E-27 203.9 30.0 310 107-507 47-362 (363)
87 2z61_A Probable aspartate amin 99.9 2.6E-23 8.8E-28 211.7 22.9 315 107-508 44-368 (370)
88 2x5d_A Probable aminotransfera 99.9 6E-23 2.1E-27 212.2 25.8 335 107-512 52-399 (412)
89 3cq5_A Histidinol-phosphate am 99.9 3.3E-22 1.1E-26 203.6 30.8 300 123-508 64-365 (369)
90 1yiz_A Kynurenine aminotransfe 99.9 4E-23 1.4E-27 214.6 24.2 343 107-508 52-426 (429)
91 2vyc_A Biodegradative arginine 99.9 3.7E-23 1.3E-27 228.2 25.2 316 137-511 209-605 (755)
92 2c81_A Glutamine-2-deoxy-scyll 99.9 4.4E-23 1.5E-27 213.7 24.0 323 130-511 39-414 (418)
93 3ly1_A Putative histidinol-pho 99.9 2.1E-22 7.1E-27 203.5 28.4 314 106-509 30-350 (354)
94 3ele_A Amino transferase; RER0 99.9 6.1E-23 2.1E-27 210.9 24.5 328 107-512 50-397 (398)
95 3uwc_A Nucleotide-sugar aminot 99.9 6.4E-24 2.2E-28 216.3 16.5 326 104-510 16-370 (374)
96 3frk_A QDTB; aminotransferase, 99.9 5.7E-24 1.9E-28 216.9 15.6 323 107-509 16-366 (373)
97 3kki_A CAI-1 autoinducer synth 99.9 2.5E-22 8.4E-27 207.4 27.7 293 133-510 104-403 (409)
98 3fdb_A Beta C-S lyase, putativ 99.9 1E-22 3.5E-27 207.5 24.3 324 107-510 38-375 (377)
99 2dkj_A Serine hydroxymethyltra 99.9 1.7E-23 5.6E-28 215.6 18.5 340 96-510 25-387 (407)
100 3qm2_A Phosphoserine aminotran 99.9 7.3E-24 2.5E-28 216.2 15.3 306 128-510 67-384 (386)
101 3euc_A Histidinol-phosphate am 99.9 7.7E-23 2.6E-27 207.8 22.8 286 137-508 71-365 (367)
102 2fyf_A PSAT, phosphoserine ami 99.9 3.8E-23 1.3E-27 212.7 20.5 343 94-510 39-397 (398)
103 3get_A Histidinol-phosphate am 99.9 2.5E-22 8.6E-27 203.9 26.1 312 107-508 45-364 (365)
104 3dr4_A Putative perosamine syn 99.9 2.6E-23 8.9E-28 213.4 18.9 309 127-507 54-389 (391)
105 2x3l_A ORN/Lys/Arg decarboxyla 99.9 1.5E-23 5E-28 219.1 16.4 292 133-511 57-353 (446)
106 3ihj_A Alanine aminotransferas 99.9 4.6E-22 1.6E-26 210.7 27.8 340 122-516 122-498 (498)
107 2dou_A Probable N-succinyldiam 99.9 2.9E-22 9.8E-27 204.4 25.1 322 108-507 41-374 (376)
108 3fvs_A Kynurenine--oxoglutarat 99.9 8.4E-23 2.9E-27 211.5 20.8 345 106-510 42-421 (422)
109 1c4k_A Protein (ornithine deca 99.9 2.2E-22 7.6E-27 220.1 24.5 325 136-511 176-566 (730)
110 3b46_A Aminotransferase BNA3; 99.9 6.1E-23 2.1E-27 214.6 19.1 344 106-506 71-442 (447)
111 2o1b_A Aminotransferase, class 99.9 7.5E-23 2.6E-27 211.1 19.5 326 108-509 63-401 (404)
112 3ftb_A Histidinol-phosphate am 99.9 1.3E-21 4.3E-26 198.2 28.0 285 137-509 65-359 (361)
113 1bs0_A Protein (8-amino-7-oxon 99.9 5E-22 1.7E-26 203.1 24.9 291 133-507 84-383 (384)
114 2cb1_A O-acetyl homoserine sul 99.9 9.6E-22 3.3E-26 203.3 26.4 300 134-506 57-411 (412)
115 2oga_A Transaminase; PLP-depen 99.9 1.4E-22 4.8E-27 208.6 19.2 325 108-511 44-396 (399)
116 2a7v_A Serine hydroxymethyltra 99.9 3.9E-22 1.3E-26 209.2 22.6 335 107-509 67-439 (490)
117 2bwn_A 5-aminolevulinate synth 99.9 1.8E-21 6.2E-26 200.2 26.7 297 136-510 94-399 (401)
118 2c0r_A PSAT, phosphoserine ami 99.9 8.8E-22 3E-26 199.7 23.8 306 128-510 44-360 (362)
119 2vi8_A Serine hydroxymethyltra 99.9 1.1E-22 3.8E-27 209.3 17.3 330 107-511 36-387 (405)
120 3ezs_A Aminotransferase ASPB; 99.9 1.1E-21 3.9E-26 199.7 24.7 317 107-509 38-373 (376)
121 1mdo_A ARNB aminotransferase; 99.9 7.5E-22 2.6E-26 202.3 23.5 329 111-511 23-386 (393)
122 1lc5_A COBD, L-threonine-O-3-p 99.9 2.4E-21 8.4E-26 196.6 26.8 314 108-511 40-360 (364)
123 3n0l_A Serine hydroxymethyltra 99.9 8.8E-22 3E-26 203.3 23.3 329 107-509 38-387 (417)
124 2rfv_A Methionine gamma-lyase; 99.9 1.2E-21 4.1E-26 201.6 23.1 288 131-507 62-396 (398)
125 3lws_A Aromatic amino acid bet 99.9 3.6E-21 1.2E-25 194.7 26.1 328 94-507 12-355 (357)
126 1o69_A Aminotransferase; struc 99.9 1.9E-21 6.7E-26 199.8 24.4 330 128-509 31-385 (394)
127 1w23_A Phosphoserine aminotran 99.9 3.3E-22 1.1E-26 202.4 18.3 334 101-509 9-358 (360)
128 3e2y_A Kynurenine-oxoglutarate 99.9 6.5E-22 2.2E-26 204.0 20.2 342 106-506 37-408 (410)
129 2x5f_A Aspartate_tyrosine_phen 99.9 4.1E-21 1.4E-25 199.6 25.4 316 122-511 81-429 (430)
130 1e5e_A MGL, methionine gamma-l 99.9 6.2E-21 2.1E-25 196.7 26.5 281 137-513 66-397 (404)
131 2po3_A 4-dehydrase; external a 99.9 1.4E-20 4.9E-25 195.2 28.7 327 107-511 31-386 (424)
132 1gc0_A Methionine gamma-lyase; 99.9 2.5E-21 8.7E-26 199.2 22.6 283 134-507 66-397 (398)
133 3jtx_A Aminotransferase; NP_28 99.9 6.8E-21 2.3E-25 195.4 25.4 328 107-507 45-394 (396)
134 3rq1_A Aminotransferase class 99.9 6.3E-21 2.2E-25 197.3 25.3 335 105-512 56-416 (418)
135 3gbx_A Serine hydroxymethyltra 99.9 6.6E-22 2.3E-26 204.4 17.9 308 130-510 73-395 (420)
136 3hdo_A Histidinol-phosphate am 99.9 4.2E-21 1.4E-25 194.6 23.1 308 108-510 42-354 (360)
137 1fg7_A Histidinol phosphate am 99.9 1E-20 3.4E-25 191.7 25.7 285 131-506 60-353 (356)
138 3p1t_A Putative histidinol-pho 99.9 2E-20 6.7E-25 187.5 27.4 302 108-509 32-335 (337)
139 2r2n_A Kynurenine/alpha-aminoa 99.9 1.2E-20 4E-25 195.9 26.6 328 124-511 73-424 (425)
140 1jg8_A L-ALLO-threonine aldola 99.9 8.3E-22 2.8E-26 198.5 17.2 318 108-510 18-345 (347)
141 3qhx_A Cystathionine gamma-syn 99.9 1.2E-20 4.1E-25 193.8 25.8 229 136-430 69-320 (392)
142 3b8x_A WBDK, pyridoxamine 5-ph 99.9 1.9E-20 6.4E-25 192.0 26.8 336 104-504 11-389 (390)
143 1ax4_A Tryptophanase; tryptoph 99.9 3.2E-21 1.1E-25 202.5 21.6 380 72-511 21-441 (467)
144 3nyt_A Aminotransferase WBPE; 99.9 3.5E-22 1.2E-26 203.3 13.7 319 107-507 15-360 (367)
145 3ecd_A Serine hydroxymethyltra 99.9 4.3E-21 1.5E-25 198.6 21.1 307 132-511 77-397 (425)
146 3if2_A Aminotransferase; YP_26 99.9 6.5E-21 2.2E-25 198.8 21.3 327 123-513 77-442 (444)
147 3ju7_A Putative PLP-dependent 99.9 5.1E-21 1.7E-25 195.5 19.8 308 128-509 35-373 (377)
148 3pj0_A LMO0305 protein; struct 99.9 5.4E-20 1.9E-24 186.1 26.8 302 124-507 43-358 (359)
149 3b1d_A Betac-S lyase; HET: PLP 99.8 1.3E-23 4.4E-28 215.8 0.0 332 108-509 47-391 (392)
150 1qgn_A Protein (cystathionine 99.9 1.7E-20 5.7E-25 195.2 23.3 282 136-510 117-444 (445)
151 3fsl_A Aromatic-amino-acid ami 99.9 6.9E-21 2.4E-25 195.4 20.1 359 74-507 14-396 (397)
152 3qgu_A LL-diaminopimelate amin 99.9 2.9E-20 9.8E-25 194.3 25.0 314 122-510 104-439 (449)
153 3t18_A Aminotransferase class 99.9 3.1E-20 1.1E-24 191.8 24.9 349 87-512 38-411 (413)
154 3ri6_A O-acetylhomoserine sulf 99.9 9.8E-21 3.3E-25 196.3 20.6 244 127-429 80-355 (430)
155 1vef_A Acetylornithine/acetyl- 99.9 3.8E-20 1.3E-24 189.9 24.8 290 132-508 86-394 (395)
156 1cs1_A CGS, protein (cystathio 99.9 1.1E-19 3.8E-24 186.1 28.1 283 128-507 51-383 (386)
157 2ez2_A Beta-tyrosinase, tyrosi 99.9 9.6E-20 3.3E-24 190.7 27.9 321 124-512 70-432 (456)
158 2oqx_A Tryptophanase; lyase, p 99.9 2E-20 6.8E-25 196.4 22.1 376 71-512 18-443 (467)
159 3ei9_A LL-diaminopimelate amin 99.9 2.5E-20 8.6E-25 193.7 22.1 308 123-509 92-426 (432)
160 4f4e_A Aromatic-amino-acid ami 99.8 8.4E-21 2.9E-25 196.7 16.9 362 72-508 35-419 (420)
161 3g7q_A Valine-pyruvate aminotr 99.8 6.1E-20 2.1E-24 189.6 22.2 337 108-513 49-415 (417)
162 3h7f_A Serine hydroxymethyltra 99.8 4.8E-20 1.6E-24 192.7 21.0 308 128-509 86-412 (447)
163 3ruy_A Ornithine aminotransfer 99.8 1.2E-19 4.2E-24 185.9 23.2 296 134-508 79-391 (392)
164 1ajs_A Aspartate aminotransfer 99.8 3E-20 1E-24 191.8 18.7 329 108-511 51-411 (412)
165 1pff_A Methionine gamma-lyase; 99.8 4.4E-20 1.5E-24 184.7 19.0 276 138-506 3-329 (331)
166 7aat_A Aspartate aminotransfer 99.8 5.8E-20 2E-24 188.9 20.0 361 73-508 15-400 (401)
167 3acz_A Methionine gamma-lyase; 99.8 2.1E-19 7.3E-24 184.3 24.0 213 136-414 62-280 (389)
168 3ppl_A Aspartate aminotransfer 99.8 2.3E-19 7.7E-24 186.2 23.9 318 123-513 72-422 (427)
169 3ez1_A Aminotransferase MOCR f 99.8 1.7E-19 5.8E-24 186.8 22.8 319 123-513 63-417 (423)
170 2ctz_A O-acetyl-L-homoserine s 99.8 2.6E-19 8.8E-24 185.6 24.0 249 137-430 62-346 (421)
171 3fkd_A L-threonine-O-3-phospha 99.8 5.8E-19 2E-23 178.0 26.0 280 137-509 54-340 (350)
172 1yaa_A Aspartate aminotransfer 99.8 3.3E-20 1.1E-24 191.5 16.0 358 73-510 16-410 (412)
173 3ndn_A O-succinylhomoserine su 99.8 2E-19 6.9E-24 185.8 21.5 231 134-430 82-335 (414)
174 2eh6_A Acoat, acetylornithine 99.8 2.6E-19 8.9E-24 182.2 21.6 287 136-507 73-374 (375)
175 2fq6_A Cystathionine beta-lyas 99.8 2.1E-19 7.3E-24 185.5 20.1 288 127-506 80-413 (415)
176 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.8 6.4E-19 2.2E-23 183.5 23.8 325 125-508 58-433 (437)
177 2ord_A Acoat, acetylornithine 99.8 5.3E-19 1.8E-23 181.6 22.7 296 132-510 81-396 (397)
178 1sff_A 4-aminobutyrate aminotr 99.8 5E-18 1.7E-22 175.8 30.1 339 109-511 61-424 (426)
179 2ay1_A Aroat, aromatic amino a 99.8 3.6E-19 1.2E-23 182.4 21.2 321 108-507 47-392 (394)
180 3d6k_A Putative aminotransfera 99.8 1.2E-18 4.1E-23 180.6 24.5 320 123-514 70-421 (422)
181 3meb_A Aspartate aminotransfer 99.8 9.2E-19 3.2E-23 182.9 23.8 360 72-510 35-443 (448)
182 3asa_A LL-diaminopimelate amin 99.8 1.7E-19 5.9E-24 185.5 17.9 307 123-512 69-394 (400)
183 3f6t_A Aspartate aminotransfer 99.8 3.9E-19 1.3E-23 189.7 21.1 370 105-516 116-530 (533)
184 3n75_A LDC, lysine decarboxyla 99.8 1E-18 3.5E-23 189.7 24.2 237 137-418 199-456 (715)
185 2q7w_A Aspartate aminotransfer 99.8 8.9E-20 3.1E-24 187.0 15.0 320 108-507 47-395 (396)
186 1n8p_A Cystathionine gamma-lya 99.8 4.1E-19 1.4E-23 182.4 19.6 281 136-507 58-391 (393)
187 4adb_A Succinylornithine trans 99.8 2E-18 6.9E-23 177.5 24.8 300 133-513 81-402 (406)
188 3dxv_A Alpha-amino-epsilon-cap 99.8 6.1E-18 2.1E-22 176.1 28.3 319 130-512 83-426 (439)
189 3nx3_A Acoat, acetylornithine 99.8 6.1E-18 2.1E-22 173.5 27.7 299 132-509 77-393 (395)
190 1ibj_A CBL, cystathionine beta 99.8 1.5E-19 5.3E-24 189.2 14.9 159 134-336 134-298 (464)
191 2aeu_A Hypothetical protein MJ 99.8 1.3E-18 4.3E-23 177.6 20.9 298 132-512 57-372 (374)
192 1uu1_A Histidinol-phosphate am 99.8 2.9E-18 9.8E-23 172.0 23.0 296 107-506 34-333 (335)
193 1s0a_A Adenosylmethionine-8-am 99.8 1E-17 3.6E-22 173.8 27.5 308 135-511 88-424 (429)
194 2pb2_A Acetylornithine/succiny 99.8 3E-18 1E-22 177.6 23.1 304 132-512 98-419 (420)
195 3cog_A Cystathionine gamma-lya 99.8 3.1E-18 1E-22 176.4 23.0 216 127-413 65-287 (403)
196 1z7d_A Ornithine aminotransfer 99.8 1.1E-17 3.9E-22 173.9 27.3 306 133-513 107-431 (433)
197 2eo5_A 419AA long hypothetical 99.8 1.7E-17 5.9E-22 171.7 28.3 300 133-511 86-418 (419)
198 3i4j_A Aminotransferase, class 99.8 1.9E-17 6.6E-22 171.8 28.5 330 131-511 70-428 (430)
199 3nmy_A Xometc, cystathionine g 99.8 4E-18 1.4E-22 175.3 21.3 233 127-430 65-322 (400)
200 4eu1_A Mitochondrial aspartate 99.8 3.8E-18 1.3E-22 175.9 20.5 352 73-508 28-408 (409)
201 3i16_A Aluminum resistance pro 99.8 7.4E-18 2.5E-22 174.0 20.3 235 130-429 74-340 (427)
202 2oat_A Ornithine aminotransfer 99.8 5.9E-17 2E-21 168.8 27.3 302 135-510 120-438 (439)
203 3i5t_A Aminotransferase; pyrid 99.8 3.4E-16 1.2E-20 164.7 31.7 339 130-516 94-459 (476)
204 3gju_A Putative aminotransfera 99.8 1E-16 3.5E-21 168.0 27.6 333 131-513 93-458 (460)
205 1zod_A DGD, 2,2-dialkylglycine 99.8 4.3E-17 1.5E-21 169.3 24.3 319 133-511 85-432 (433)
206 3a8u_X Omega-amino acid--pyruv 99.8 3.1E-16 1.1E-20 163.7 30.3 326 132-511 92-447 (449)
207 3jzl_A Putative cystathionine 99.8 1.2E-17 4E-22 171.8 18.7 231 138-429 64-323 (409)
208 4a6r_A Omega transaminase; tra 99.8 2.2E-16 7.5E-21 165.4 28.3 326 131-513 92-451 (459)
209 3n5m_A Adenosylmethionine-8-am 99.8 3.4E-16 1.2E-20 163.6 29.5 348 109-509 69-450 (452)
210 3tfu_A Adenosylmethionine-8-am 99.8 6.5E-17 2.2E-21 169.3 23.9 314 132-512 117-454 (457)
211 3hmu_A Aminotransferase, class 99.8 5.3E-16 1.8E-20 163.0 30.3 330 131-513 97-454 (472)
212 3hvy_A Cystathionine beta-lyas 99.7 3.9E-17 1.3E-21 168.5 19.9 232 138-429 79-340 (427)
213 3dod_A Adenosylmethionine-8-am 99.7 7.2E-16 2.5E-20 160.9 29.7 330 131-512 85-444 (448)
214 3oks_A 4-aminobutyrate transam 99.7 5.3E-16 1.8E-20 162.1 28.5 339 109-509 81-449 (451)
215 4ffc_A 4-aminobutyrate aminotr 99.7 3.6E-16 1.2E-20 163.5 27.1 320 130-513 104-451 (453)
216 2cjg_A L-lysine-epsilon aminot 99.7 2.2E-16 7.4E-21 165.0 22.6 313 133-511 101-448 (449)
217 3k28_A Glutamate-1-semialdehyd 99.7 1.5E-16 5E-21 165.2 21.0 309 135-511 95-427 (429)
218 3l44_A Glutamate-1-semialdehyd 99.7 2.4E-16 8.1E-21 163.8 22.2 309 134-513 96-432 (434)
219 3ht4_A Aluminum resistance pro 99.7 3.7E-17 1.3E-21 169.4 15.2 236 135-429 67-329 (431)
220 3fq8_A Glutamate-1-semialdehyd 99.7 3E-16 1E-20 162.7 21.6 311 131-510 90-426 (427)
221 2cy8_A D-phgat, D-phenylglycin 99.7 1.7E-15 6E-20 158.2 26.9 329 109-513 77-437 (453)
222 3bwn_A AT1G70560, L-tryptophan 99.7 1.3E-15 4.5E-20 156.1 23.0 293 122-510 56-386 (391)
223 2epj_A Glutamate-1-semialdehyd 99.7 2.2E-15 7.4E-20 156.6 24.4 312 132-512 95-432 (434)
224 2zy4_A L-aspartate beta-decarb 99.7 2.8E-16 9.7E-21 167.7 18.1 357 123-516 132-527 (546)
225 3k7y_A Aspartate aminotransfer 99.7 4.9E-16 1.7E-20 159.8 18.7 327 106-510 48-404 (405)
226 1ohv_A 4-aminobutyrate aminotr 99.7 6.1E-15 2.1E-19 154.9 26.1 315 131-511 108-471 (472)
227 4e77_A Glutamate-1-semialdehyd 99.7 4.5E-15 1.5E-19 153.9 24.4 307 133-509 93-427 (429)
228 3ou5_A Serine hydroxymethyltra 99.6 2.8E-14 9.7E-19 143.9 22.4 353 97-508 57-438 (490)
229 2e7u_A Glutamate-1-semialdehyd 99.6 4.3E-14 1.5E-18 146.3 22.2 308 131-507 90-423 (424)
230 2hox_A ALLIIN lyase 1; cystein 99.6 4.6E-15 1.6E-19 153.9 14.2 313 107-508 71-422 (427)
231 4h51_A Aspartate aminotransfer 99.6 2E-13 6.7E-18 140.6 21.7 332 109-514 66-420 (420)
232 4ao9_A Beta-phenylalanine amin 99.4 5.3E-11 1.8E-15 123.2 24.1 307 133-512 127-447 (454)
233 2yky_A Beta-transaminase; tran 99.1 3.7E-14 1.3E-18 147.8 0.0 309 132-512 139-461 (465)
234 4atq_A 4-aminobutyrate transam 99.3 1.8E-09 6.3E-14 112.0 30.6 319 134-510 108-454 (456)
235 4e3q_A Pyruvate transaminase; 99.3 4.5E-10 1.5E-14 117.1 25.5 331 132-514 110-471 (473)
236 4a0g_A Adenosylmethionine-8-am 99.1 7.7E-10 2.6E-14 123.0 18.2 328 137-511 428-828 (831)
237 3m0z_A Putative aldolase; MCSG 75.2 14 0.00046 33.4 8.7 75 202-289 144-221 (249)
238 4fgs_A Probable dehydrogenase 66.3 26 0.00089 32.8 9.3 66 194-268 56-121 (273)
239 1tks_A 3,4-dihydroxy-2-butanon 64.0 12 0.0004 33.4 5.9 51 234-284 143-193 (204)
240 4g81_D Putative hexonate dehyd 58.0 57 0.002 30.1 10.0 65 195-267 36-103 (255)
241 3mio_A DHBP synthase, 3,4-dihy 53.5 28 0.00096 31.0 6.5 51 234-284 142-193 (206)
242 3grp_A 3-oxoacyl-(acyl carrier 53.1 74 0.0025 29.2 10.0 65 194-267 54-118 (266)
243 3h8q_A Thioredoxin reductase 3 53.0 54 0.0018 25.7 7.8 72 191-272 17-90 (114)
244 2pju_A Propionate catabolism o 51.5 80 0.0027 28.5 9.5 69 191-283 107-175 (225)
245 3m6y_A 4-hydroxy-2-oxoglutarat 51.0 17 0.00057 33.2 4.6 74 203-289 168-244 (275)
246 4dqx_A Probable oxidoreductase 48.7 85 0.0029 29.0 9.7 64 194-266 54-117 (277)
247 3rwb_A TPLDH, pyridoxal 4-dehy 48.7 71 0.0024 28.8 9.0 64 195-266 33-96 (247)
248 1g57_A DHBP synthase, 3,4-dihy 48.5 33 0.0011 30.8 6.3 50 234-284 151-200 (217)
249 3l21_A DHDPS, dihydrodipicolin 46.6 20 0.00069 34.2 4.9 57 229-285 30-89 (304)
250 3gvc_A Oxidoreductase, probabl 46.0 87 0.003 28.9 9.3 64 194-266 56-119 (277)
251 2q5c_A NTRC family transcripti 45.9 59 0.002 28.6 7.6 68 192-283 96-163 (196)
252 4e6p_A Probable sorbitol dehyd 45.7 1.1E+02 0.0038 27.7 9.9 64 194-266 35-98 (259)
253 3dz1_A Dihydrodipicolinate syn 45.6 21 0.00072 34.2 4.9 57 229-285 23-81 (313)
254 1snn_A DHBP synthase, 3,4-dihy 44.5 40 0.0014 30.4 6.2 51 233-284 161-211 (227)
255 1f6k_A N-acetylneuraminate lya 44.1 24 0.00083 33.4 5.0 57 229-285 18-78 (293)
256 2wkj_A N-acetylneuraminate lya 44.1 23 0.0008 33.7 4.9 57 229-285 26-85 (303)
257 3fkr_A L-2-keto-3-deoxyarabona 43.5 20 0.00067 34.4 4.3 62 222-285 18-82 (309)
258 3cpr_A Dihydrodipicolinate syn 43.3 26 0.00088 33.4 5.1 57 229-285 31-90 (304)
259 3lyl_A 3-oxoacyl-(acyl-carrier 43.2 1.7E+02 0.0057 26.0 10.6 44 218-266 55-98 (247)
260 4eso_A Putative oxidoreductase 42.6 84 0.0029 28.5 8.5 64 194-266 35-98 (255)
261 4ibo_A Gluconate dehydrogenase 42.4 1.7E+02 0.0058 26.7 10.7 44 218-266 76-119 (271)
262 3o38_A Short chain dehydrogena 41.7 1.4E+02 0.0046 27.1 9.9 45 217-266 73-117 (266)
263 3s5o_A 4-hydroxy-2-oxoglutarat 41.6 25 0.00086 33.6 4.7 61 223-285 25-88 (307)
264 3tfo_A Putative 3-oxoacyl-(acy 40.9 1.2E+02 0.0042 27.6 9.4 44 218-266 54-97 (264)
265 2r8w_A AGR_C_1641P; APC7498, d 39.9 26 0.00089 33.9 4.6 57 229-285 49-108 (332)
266 3l6e_A Oxidoreductase, short-c 39.5 95 0.0032 27.7 8.2 64 194-266 30-93 (235)
267 4dpp_A DHDPS 2, dihydrodipicol 39.5 30 0.001 33.8 4.9 57 229-285 74-133 (360)
268 3flu_A DHDPS, dihydrodipicolin 39.4 23 0.00077 33.7 4.0 57 229-285 22-81 (297)
269 3b4u_A Dihydrodipicolinate syn 38.2 24 0.00084 33.4 4.0 51 229-279 18-68 (294)
270 3op4_A 3-oxoacyl-[acyl-carrier 37.9 1.2E+02 0.0042 27.2 8.8 64 194-266 36-99 (248)
271 3na8_A Putative dihydrodipicol 37.8 21 0.00072 34.2 3.5 57 229-285 39-98 (315)
272 3imf_A Short chain dehydrogena 37.8 1.9E+02 0.0064 26.0 10.1 67 194-266 33-99 (257)
273 3tak_A DHDPS, dihydrodipicolin 37.6 23 0.00078 33.5 3.7 57 229-285 16-75 (291)
274 1xky_A Dihydrodipicolinate syn 37.3 25 0.00087 33.4 4.0 56 229-284 27-85 (301)
275 3qze_A DHDPS, dihydrodipicolin 37.2 24 0.00082 33.8 3.8 57 229-285 38-97 (314)
276 2ojp_A DHDPS, dihydrodipicolin 37.1 23 0.0008 33.5 3.7 56 229-284 16-74 (292)
277 3h7a_A Short chain dehydrogena 37.0 1.5E+02 0.0051 26.7 9.3 43 218-266 57-99 (252)
278 3si9_A DHDPS, dihydrodipicolin 36.8 22 0.00074 34.2 3.4 57 229-285 37-96 (315)
279 1hxh_A 3BETA/17BETA-hydroxyste 36.8 2.3E+02 0.0077 25.4 10.5 64 194-266 33-96 (253)
280 2hmc_A AGR_L_411P, dihydrodipi 35.8 37 0.0013 33.0 4.9 56 229-284 41-96 (344)
281 2v9d_A YAGE; dihydrodipicolini 35.4 30 0.001 33.6 4.2 61 222-284 41-104 (343)
282 1k4i_A 3,4-dihydroxy-2-butanon 35.1 62 0.0021 29.3 5.8 51 234-284 151-211 (233)
283 4dyv_A Short-chain dehydrogena 34.9 1.6E+02 0.0055 26.9 9.2 59 194-261 55-113 (272)
284 3m1a_A Putative dehydrogenase; 34.1 1.6E+02 0.0056 26.8 9.2 64 194-266 32-95 (281)
285 3sju_A Keto reductase; short-c 34.1 1.5E+02 0.005 27.3 8.8 44 218-266 74-117 (279)
286 1w3i_A EDA, 2-keto-3-deoxy glu 34.1 26 0.0009 33.1 3.5 51 229-279 14-64 (293)
287 3nvt_A 3-deoxy-D-arabino-heptu 34.0 1.4E+02 0.0046 29.4 8.7 81 202-292 238-323 (385)
288 3h5d_A DHDPS, dihydrodipicolin 34.0 23 0.0008 33.8 3.1 57 229-285 22-81 (311)
289 2nuw_A 2-keto-3-deoxygluconate 33.6 22 0.00075 33.6 2.8 51 229-279 14-64 (288)
290 4gqr_A Pancreatic alpha-amylas 33.1 16 0.00056 36.9 2.0 31 259-289 69-99 (496)
291 3oid_A Enoyl-[acyl-carrier-pro 33.0 2.3E+02 0.0077 25.5 9.8 44 218-266 55-98 (258)
292 3a5f_A Dihydrodipicolinate syn 33.0 33 0.0011 32.3 4.0 50 229-279 17-66 (291)
293 1zco_A 2-dehydro-3-deoxyphosph 32.9 1.1E+02 0.0037 28.3 7.4 85 200-293 117-205 (262)
294 3rih_A Short chain dehydrogena 32.7 2.4E+02 0.0082 26.1 10.1 68 194-267 68-136 (293)
295 4fn4_A Short chain dehydrogena 32.4 1.4E+02 0.0048 27.3 8.2 59 194-261 34-95 (254)
296 3tjr_A Short chain dehydrogena 32.3 1.8E+02 0.0061 27.0 9.2 44 218-266 81-124 (301)
297 3d0c_A Dihydrodipicolinate syn 32.1 28 0.00095 33.4 3.3 57 229-285 27-86 (314)
298 3n74_A 3-ketoacyl-(acyl-carrie 31.9 2.8E+02 0.0095 24.7 10.9 60 194-262 36-95 (261)
299 3kts_A Glycerol uptake operon 31.5 31 0.0011 30.4 3.2 48 233-291 18-67 (192)
300 3m5v_A DHDPS, dihydrodipicolin 31.4 33 0.0011 32.6 3.7 57 229-285 22-82 (301)
301 3v8b_A Putative dehydrogenase, 31.3 2.6E+02 0.0088 25.6 10.0 62 194-261 55-116 (283)
302 3eb2_A Putative dihydrodipicol 31.1 23 0.00077 33.7 2.5 57 229-285 19-78 (300)
303 3qfe_A Putative dihydrodipicol 31.0 28 0.00094 33.5 3.1 57 229-285 26-85 (318)
304 3ctg_A Glutaredoxin-2; reduced 30.5 1.5E+02 0.0052 23.7 7.2 72 191-272 37-114 (129)
305 4fs3_A Enoyl-[acyl-carrier-pro 29.4 3.1E+02 0.011 24.6 10.3 63 194-262 35-98 (256)
306 3e96_A Dihydrodipicolinate syn 29.4 32 0.0011 33.0 3.2 51 229-279 27-77 (316)
307 1x1t_A D(-)-3-hydroxybutyrate 29.3 3E+02 0.01 24.5 10.1 43 218-265 56-98 (260)
308 3rag_A Uncharacterized protein 28.8 44 0.0015 30.6 3.8 36 250-287 10-45 (242)
309 2jah_A Clavulanic acid dehydro 28.8 2.6E+02 0.009 24.8 9.5 44 218-266 57-100 (247)
310 3tpc_A Short chain alcohol deh 28.5 1.4E+02 0.0049 26.8 7.6 52 205-264 44-95 (257)
311 4fc7_A Peroxisomal 2,4-dienoyl 28.5 2E+02 0.0068 26.3 8.7 44 218-266 78-121 (277)
312 1g94_A Alpha-amylase; beta-alp 28.3 22 0.00076 35.8 2.0 30 260-289 58-87 (448)
313 3ezx_A MMCP 1, monomethylamine 28.2 1.4E+02 0.0049 26.5 7.2 86 205-315 112-203 (215)
314 2a4k_A 3-oxoacyl-[acyl carrier 27.9 2.3E+02 0.0079 25.6 8.9 63 194-265 33-95 (263)
315 3ftp_A 3-oxoacyl-[acyl-carrier 27.8 3E+02 0.01 25.0 9.7 48 211-266 74-121 (270)
316 3rjz_A N-type ATP pyrophosphat 27.8 3.4E+02 0.012 24.5 10.3 102 159-284 7-120 (237)
317 3ged_A Short-chain dehydrogena 27.7 1.9E+02 0.0066 26.3 8.2 46 218-268 48-93 (247)
318 3tox_A Short chain dehydrogena 27.7 3.5E+02 0.012 24.6 10.4 62 195-261 35-96 (280)
319 3lf2_A Short chain oxidoreduct 27.4 2.5E+02 0.0087 25.2 9.2 45 218-267 60-104 (265)
320 3u5t_A 3-oxoacyl-[acyl-carrier 26.6 2.8E+02 0.0095 25.1 9.3 44 218-266 78-121 (267)
321 2rhc_B Actinorhodin polyketide 26.6 3.3E+02 0.011 24.7 9.9 43 218-265 72-114 (277)
322 2ew8_A (S)-1-phenylethanol deh 26.4 3.2E+02 0.011 24.2 9.6 64 194-265 34-97 (249)
323 1vl8_A Gluconate 5-dehydrogena 26.4 2.8E+02 0.0097 25.0 9.3 43 218-265 72-114 (267)
324 3edm_A Short chain dehydrogena 26.4 3.4E+02 0.012 24.2 9.8 44 218-266 59-103 (259)
325 3v2h_A D-beta-hydroxybutyrate 26.3 3.7E+02 0.013 24.4 10.3 69 193-266 51-120 (281)
326 3l77_A Short-chain alcohol deh 26.2 2.1E+02 0.007 25.2 8.1 45 218-267 53-97 (235)
327 3v2g_A 3-oxoacyl-[acyl-carrier 26.2 3.2E+02 0.011 24.8 9.6 44 218-266 82-125 (271)
328 1geg_A Acetoin reductase; SDR 26.0 3.1E+02 0.011 24.4 9.5 43 218-265 52-94 (256)
329 3pk0_A Short-chain dehydrogena 25.9 3.1E+02 0.011 24.6 9.5 45 217-266 60-104 (262)
330 4dmm_A 3-oxoacyl-[acyl-carrier 25.6 2.4E+02 0.0082 25.6 8.6 44 218-266 79-122 (269)
331 2yxg_A DHDPS, dihydrodipicolin 25.4 45 0.0015 31.4 3.4 51 229-279 15-65 (289)
332 3is3_A 17BETA-hydroxysteroid d 25.3 2.5E+02 0.0086 25.4 8.7 45 218-267 69-113 (270)
333 3ff4_A Uncharacterized protein 25.2 98 0.0034 24.8 5.0 43 233-284 67-109 (122)
334 1hdc_A 3-alpha, 20 beta-hydrox 25.2 2.2E+02 0.0077 25.4 8.3 62 194-264 32-93 (254)
335 3zv4_A CIS-2,3-dihydrobiphenyl 24.9 2.6E+02 0.009 25.5 8.8 59 194-261 32-90 (281)
336 3bh4_A Alpha-amylase; calcium, 24.7 30 0.001 35.2 2.2 30 260-289 72-101 (483)
337 3ai3_A NADPH-sorbose reductase 24.7 3.3E+02 0.011 24.3 9.4 44 218-266 58-101 (263)
338 1mxg_A Alpha amylase; hyperthe 24.6 30 0.001 34.7 2.2 30 260-289 80-109 (435)
339 1ud2_A Amylase, alpha-amylase; 24.6 30 0.001 35.2 2.2 30 260-289 74-103 (480)
340 2r91_A 2-keto-3-deoxy-(6-phosp 24.6 45 0.0015 31.3 3.2 51 229-279 13-63 (286)
341 1vs1_A 3-deoxy-7-phosphoheptul 24.3 3.4E+02 0.011 25.2 9.2 84 200-292 132-219 (276)
342 1lwj_A 4-alpha-glucanotransfer 24.2 30 0.001 34.7 2.0 30 260-289 63-92 (441)
343 2pcq_A Putative dihydrodipicol 24.2 22 0.00074 33.6 0.9 58 223-284 9-66 (283)
344 3ghf_A Septum site-determining 24.1 1E+02 0.0036 24.6 4.9 49 232-284 25-78 (120)
345 1o5k_A DHDPS, dihydrodipicolin 24.1 50 0.0017 31.4 3.5 56 229-284 27-85 (306)
346 4egf_A L-xylulose reductase; s 24.0 2.8E+02 0.0094 25.0 8.7 44 218-266 71-114 (266)
347 3cxt_A Dehydrogenase with diff 23.9 3.6E+02 0.012 24.7 9.6 43 218-265 84-126 (291)
348 1hvx_A Alpha-amylase; hydrolas 23.9 31 0.0011 35.5 2.1 30 260-289 75-104 (515)
349 3vup_A Beta-1,4-mannanase; TIM 23.8 61 0.0021 30.2 4.1 23 265-287 88-110 (351)
350 1w6u_A 2,4-dienoyl-COA reducta 23.8 3.8E+02 0.013 24.4 9.8 42 218-264 77-118 (302)
351 2wci_A Glutaredoxin-4; redox-a 23.7 2.9E+02 0.01 22.3 7.9 68 191-271 35-109 (135)
352 3dhu_A Alpha-amylase; structur 23.7 31 0.001 34.7 2.0 30 260-289 77-106 (449)
353 2ehh_A DHDPS, dihydrodipicolin 23.7 47 0.0016 31.3 3.2 56 229-284 15-73 (294)
354 1wpc_A Glucan 1,4-alpha-maltoh 23.6 34 0.0011 34.9 2.3 30 260-289 76-105 (485)
355 2c07_A 3-oxoacyl-(acyl-carrier 23.6 3.4E+02 0.012 24.7 9.3 44 218-266 94-137 (285)
356 3pgx_A Carveol dehydrogenase; 23.6 3.2E+02 0.011 24.8 9.1 44 218-266 78-121 (280)
357 1gcy_A Glucan 1,4-alpha-maltot 23.6 31 0.0011 35.6 2.1 28 261-288 87-114 (527)
358 3oec_A Carveol dehydrogenase ( 23.4 3E+02 0.01 25.6 9.1 45 218-267 108-152 (317)
359 2guy_A Alpha-amylase A; (beta- 23.4 31 0.001 35.1 1.9 31 259-289 90-120 (478)
360 3kzv_A Uncharacterized oxidore 23.3 3.8E+02 0.013 23.8 9.5 60 194-261 30-89 (254)
361 3gaf_A 7-alpha-hydroxysteroid 23.2 3.6E+02 0.012 24.0 9.3 44 218-266 62-105 (256)
362 1vr6_A Phospho-2-dehydro-3-deo 22.9 1.4E+02 0.0049 28.9 6.4 82 201-292 201-287 (350)
363 1ht6_A AMY1, alpha-amylase iso 22.7 33 0.0011 34.0 2.0 29 261-289 63-91 (405)
364 3tsc_A Putative oxidoreductase 22.5 2.7E+02 0.0091 25.3 8.3 44 218-266 74-117 (277)
365 3rkr_A Short chain oxidoreduct 22.5 2.7E+02 0.0091 25.0 8.2 38 218-260 79-116 (262)
366 3d7c_A General control of amin 22.4 2.8E+02 0.0094 21.5 7.6 57 20-82 2-59 (112)
367 2rfg_A Dihydrodipicolinate syn 22.2 48 0.0016 31.4 2.9 50 229-278 15-64 (297)
368 3r1i_A Short-chain type dehydr 22.1 2.1E+02 0.0073 26.1 7.5 44 218-266 82-125 (276)
369 3osu_A 3-oxoacyl-[acyl-carrier 22.1 4.1E+02 0.014 23.4 9.4 44 218-266 55-98 (246)
370 3l4n_A Monothiol glutaredoxin- 22.1 2.4E+02 0.0083 22.5 6.9 72 191-272 14-90 (127)
371 3qiv_A Short-chain dehydrogena 22.1 3.2E+02 0.011 24.1 8.7 38 218-260 59-96 (253)
372 2cq9_A GLRX2 protein, glutared 21.9 3E+02 0.01 21.8 7.7 69 191-269 27-97 (130)
373 1iy8_A Levodione reductase; ox 21.8 3.7E+02 0.013 24.0 9.1 40 218-262 65-104 (267)
374 3nyw_A Putative oxidoreductase 21.6 3.7E+02 0.013 23.9 9.0 44 218-266 60-103 (250)
375 2nly_A BH1492 protein, diverge 21.5 4E+02 0.014 24.1 9.0 80 205-286 44-134 (245)
376 3ioy_A Short-chain dehydrogena 21.3 2.3E+02 0.0078 26.6 7.7 44 218-266 60-103 (319)
377 2uvd_A 3-oxoacyl-(acyl-carrier 21.3 4.2E+02 0.014 23.3 9.7 43 218-265 55-97 (246)
378 3gk3_A Acetoacetyl-COA reducta 21.3 4E+02 0.014 23.9 9.3 44 218-266 76-119 (269)
379 3tzq_B Short-chain type dehydr 21.3 2.9E+02 0.0099 25.0 8.3 59 194-261 38-96 (271)
380 3daq_A DHDPS, dihydrodipicolin 21.1 56 0.0019 30.8 3.1 56 229-285 18-76 (292)
381 1yb1_A 17-beta-hydroxysteroid 21.0 4.5E+02 0.016 23.5 10.3 43 218-265 81-123 (272)
382 1zem_A Xylitol dehydrogenase; 20.9 4.1E+02 0.014 23.7 9.2 39 218-261 57-95 (262)
383 1fov_A Glutaredoxin 3, GRX3; a 20.9 2.2E+02 0.0075 19.8 7.3 32 192-226 2-35 (82)
384 4iiu_A 3-oxoacyl-[acyl-carrier 20.9 3.8E+02 0.013 23.9 9.0 44 218-266 77-120 (267)
385 2z1k_A (NEO)pullulanase; hydro 20.8 35 0.0012 34.5 1.8 25 263-287 93-117 (475)
386 4aie_A Glucan 1,6-alpha-glucos 20.6 37 0.0013 34.9 1.9 30 260-289 73-102 (549)
387 3uve_A Carveol dehydrogenase ( 20.5 3.8E+02 0.013 24.3 9.0 42 218-264 77-118 (286)
388 1wza_A Alpha-amylase A; hydrol 20.5 37 0.0013 34.5 1.9 30 260-289 75-104 (488)
389 1ae1_A Tropinone reductase-I; 20.3 4.7E+02 0.016 23.5 10.3 44 218-266 71-115 (273)
390 2o23_A HADH2 protein; HSD17B10 20.3 3.9E+02 0.013 23.6 8.9 62 194-264 39-100 (265)
391 1x7f_A Outer surface protein; 20.2 93 0.0032 30.6 4.5 58 232-289 38-96 (385)
392 1nff_A Putative oxidoreductase 20.2 4E+02 0.014 23.8 8.9 44 218-266 54-97 (260)
393 1t1v_A SH3BGRL3, SH3 domain-bi 20.1 2.6E+02 0.009 20.4 7.1 69 191-272 2-80 (93)
394 3qlj_A Short chain dehydrogena 20.0 3.1E+02 0.011 25.6 8.4 44 218-266 87-130 (322)
No 1
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=100.00 E-value=3.1e-75 Score=616.97 Aligned_cols=467 Identities=40% Similarity=0.783 Sum_probs=425.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHhhhCCCCCCCCCCCHHHHHHHHHHhhcCCCCCCCCCccc
Q 010125 18 TNPLDSEEFRRQGHMIIDFIADYYKNVEKYPVRSQVEPGYLQKVLPESAPNNPESMETILQDVQQHIVPGITHWQSPNYF 97 (517)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~il~~~~~~~~~~~~~~~~p~~~ 97 (517)
+.+||.++||+.+++++|.+++|+++++++||.|...|+++++.++..+|++|.+.+++++++.+.+.++.++|+||+||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 82 (481)
T 4e1o_A 3 LGSMEPEEYRERGREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDIERIIMPGVVHWQSPHMH 82 (481)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHSGGGSCSSCCCCTTTTGGGSCSSCCSSCCCHHHHHHHHHHHTGGGCCCTTSTTBC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCee
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCChHHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCccccc---CCCCceEEcCCchHHHHHHH
Q 010125 98 AYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLF---SGNGGGVIQGTTCEAILCTL 174 (517)
Q Consensus 98 ~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~---~~~~~g~~t~ggt~a~~~al 174 (517)
+|+++++++|+++++++.+.+|++...|..+|+.+++|+++.+|+++++|++..+.. .+.++|+||+|||+||++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al 162 (481)
T 4e1o_A 83 AYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIAL 162 (481)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHCCCCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHhCcccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999876421 12357999999999999999
Q ss_pred HHHHHHHHHHh---ccc----C-CCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHh
Q 010125 175 TAARDRVLNKI---GRE----N-ISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVE 246 (517)
Q Consensus 175 ~~ar~~~~~~~---g~~----~-~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~ 246 (517)
+++|++..++. +.+ + .++++|++|+.+|+|+.+++++.|. +++.||++. +++||+++|+++|+++++
T Consensus 163 ~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~---~~~~v~~~~--~~~~d~~~Le~~i~~~~~ 237 (481)
T 4e1o_A 163 LAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLV---KMKFLPVDD--NFSLRGEALQKAIEEDKQ 237 (481)
T ss_dssp HHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTC---EEEEECCCT--TSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCCC---ceEEEEcCC--CCcCCHHHHHHHHHHHHh
Confidence 99998766542 111 0 1678999999999999999999998 999999974 689999999999999888
Q ss_pred cCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcc
Q 010125 247 VGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDC 326 (517)
Q Consensus 247 ~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~ 326 (517)
+|..|++|++++|+|++|.+|||++|+++|++||+|+|||+||+++.+.+++++..+.|++.+||+++|+|||+++|++|
T Consensus 238 ~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~ 317 (481)
T 4e1o_A 238 RGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDC 317 (481)
T ss_dssp TTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSC
T ss_pred CCCCcEEEEEecCCCCCcCcCCHHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCce
Confidence 88889999999999999999999999999999999999999999998888888888888999999999999999999999
Q ss_pred eEEEEeCchhHHhhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 010125 327 CCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERL 406 (517)
Q Consensus 327 g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~ 406 (517)
|+++++++..+.+.+...+.|+..... ...+++.+++++++|++.++++|++++.+|.+|+++++++..++++++++.
T Consensus 318 g~l~~~~~~~l~~~~~~~~~yl~~~~~--~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~ 395 (481)
T 4e1o_A 318 TGFWVKDKYKLQQTFSVNPIYLRHANS--GVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESL 395 (481)
T ss_dssp EEEEESBHHHHHTTTCCCCGGGCCTTT--TTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCHHHHHHHhcCCchhccCccc--CCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998877778888889876432 234577889999999999999999999999999999999999999999999
Q ss_pred HhcCCCeEEecCCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEE
Q 010125 407 VSGDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFA 486 (517)
Q Consensus 407 l~~~~~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~ 486 (517)
|+++|+|+++.++.+++++|++.+. +..+.++.++|.++|.++++++.+.|..++|++
T Consensus 396 L~~~~g~~~~~~~~~~~v~f~~~~~----------------------~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~ 453 (481)
T 4e1o_A 396 VRNDPSFEIPAKRHLGLVVFRLKGP----------------------NSLTENVLKEIAKAGRLFLIPATIQDKLIIRFT 453 (481)
T ss_dssp HHTCTTEECCSCCCSSEEEEEESSC----------------------HHHHHHHHHHHHHHCSSBCEEEEETTEEEEEEE
T ss_pred HhcCCCeEEecCCceeEEEEEeCCc----------------------hHHHHHHHHHHHhCCeEEEEeeEECCEEEEEEE
Confidence 9999999998888999999999764 456788999999999888889999999999999
Q ss_pred ecCCCCcHHHHHHHHHHHHHHHHHHHh
Q 010125 487 TGATLTEKRHVVVAWTVVQQHLEAFQS 513 (517)
Q Consensus 487 ~~~~~t~~~di~~l~~~l~~~~~~l~~ 513 (517)
+++++++++||+++++.|+++++++.+
T Consensus 454 ~~~~~tt~~di~~~~~~i~~~~~~l~~ 480 (481)
T 4e1o_A 454 VTSQFTTRDDILRDWNLIRDAATLILS 480 (481)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999988753
No 2
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=100.00 E-value=2.7e-75 Score=616.04 Aligned_cols=464 Identities=41% Similarity=0.816 Sum_probs=404.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHhhhCCCCCCCCCCCHHHHHHHHHHhhcCCCCCCCCCccceeC
Q 010125 21 LDSEEFRRQGHMIIDFIADYYKNVEKYPVRSQVEPGYLQKVLPESAPNNPESMETILQDVQQHIVPGITHWQSPNYFAYF 100 (517)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~il~~~~~~~~~~~~~~~~p~~~~~~ 100 (517)
||.++||+.+++++|.+++|+++++++||.|...|++|++.++..+|++|.+.+++++++.+.+.++.++|+||+||+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~p~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 80 (475)
T 3k40_A 1 MEAPEFKDFAKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIERVIMPGVTHWHSPKFHAYF 80 (475)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTGGGSCSSCSSCTTCSGGGSCSSCCSSCCCHHHHHHHHHHHTGGGCCCTTCTTBCCSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhccCCCCCCcCceeeC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCccccc--CCCCceEEcCCchHHHHHHHHHHH
Q 010125 101 PSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLF--SGNGGGVIQGTTCEAILCTLTAAR 178 (517)
Q Consensus 101 ~~~~~~~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~--~~~~~g~~t~ggt~a~~~al~~ar 178 (517)
++++++++++++++++.+|+|...|..+|+.+++|+++++|+++++|++..++. .+.++|+||+|||+||++|++++|
T Consensus 81 ~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar 160 (475)
T 3k40_A 81 PTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAK 160 (475)
T ss_dssp CCCCCHHHHHHHHHHHHHCCCSSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHhCccccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999976422 123479999999999999999999
Q ss_pred HHHHHHhcccC--------CCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCc
Q 010125 179 DRVLNKIGREN--------ISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLI 250 (517)
Q Consensus 179 ~~~~~~~g~~~--------~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~ 250 (517)
++..++.+..+ .++++|++|+.+|+|+.+++++.|+ +++.||+++ ++ ||+++|+++|++++++|..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~g~---~~~~v~~d~--~~-~d~~~L~~~i~~~~~~~~~ 234 (475)
T 3k40_A 161 AKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGV---KLRSVQSEN--HR-MRGAALEKAIEQDVAEGLI 234 (475)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHHTC---EEEEECCBT--TB-CCHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHhhccCcccccccccCCeEEEECCCchHHHHHHHHHcCC---ceEEEECCC--CC-cCHHHHHHHHHHHHHCCCc
Confidence 87654321111 1467999999999999999999999 999999974 68 9999999999999888888
Q ss_pred ceEEEeeccCCccccccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEE
Q 010125 251 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW 330 (517)
Q Consensus 251 p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~ 330 (517)
|++|++++|+|++|.+||+++|+++|++||+|+|||+||+++.+.+++++..+.+++++||+++|+|||+++|++||+++
T Consensus 235 ~~~v~~~~~~t~~G~~~~l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~ 314 (475)
T 3k40_A 235 PFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMW 314 (475)
T ss_dssp EEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEE
T ss_pred cEEEEEEecCCCCcCcCCHHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEE
Confidence 99999999999999999999999999999999999999999988888888888888899999999999999999999999
Q ss_pred EeCchhHHhhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC
Q 010125 331 VKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGD 410 (517)
Q Consensus 331 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~ 410 (517)
++++..+.+.+...+.|+..... ...+++.+++++++|+++++++|++++.+|.+|+++++++..++++++++.|+++
T Consensus 315 ~~~~~~l~~~~~~~~~yl~~~~~--~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 392 (475)
T 3k40_A 315 LKDPSWVVNAFNVDPLYLKHDMQ--GSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVAD 392 (475)
T ss_dssp ESSGGGC-----------------------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred EeCHHHHHHHhcCCccccCCCcC--CCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99988766677777889865431 2345678899999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCC
Q 010125 411 KRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGAT 490 (517)
Q Consensus 411 ~~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~ 490 (517)
|+|+++.++.+++|+|++.+. +..+.++.++|.++|.++++++.+.|..++|++++++
T Consensus 393 ~g~~l~~~~~~~iv~f~~~~~----------------------~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~ 450 (475)
T 3k40_A 393 SRFELAAEINMGLVCFRLKGS----------------------NERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSR 450 (475)
T ss_dssp TTEEESSCCBTTEEEEEESSC----------------------HHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCT
T ss_pred CCEEEecCCceEEEEEEeCCc----------------------hHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCC
Confidence 999999888999999999764 4557889999999999889999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhh
Q 010125 491 LTEKRHVVVAWTVVQQHLEAFQSA 514 (517)
Q Consensus 491 ~t~~~di~~l~~~l~~~~~~l~~~ 514 (517)
+++++||+++++.|+++++++.++
T Consensus 451 ~tt~~di~~~~~~i~~~~~~~~~~ 474 (475)
T 3k40_A 451 FTQSEDMEYSWKEVSAAADEMEQE 474 (475)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999887653
No 3
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=100.00 E-value=1.4e-69 Score=574.94 Aligned_cols=467 Identities=43% Similarity=0.843 Sum_probs=407.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHhhhCCCCCCCCCCCHHHHHHHHHHhhcCCCCCCCCCccceeC
Q 010125 21 LDSEEFRRQGHMIIDFIADYYKNVEKYPVRSQVEPGYLQKVLPESAPNNPESMETILQDVQQHIVPGITHWQSPNYFAYF 100 (517)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~il~~~~~~~~~~~~~~~~p~~~~~~ 100 (517)
||.++||+++++++|.+.+|+++++++||.|...|+++++.++..+|++|.+.+++++++.+.+.++..+|+||+|++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 80 (486)
T 1js3_A 1 MNASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVEKIIMPGVTHWHSPYFFAYF 80 (486)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTGGGSCSSCCCCTTCSGGGSCSSCCSSCCCHHHHHHHHHHTTGGGCCCTTSTTBCSSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHhccccCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCceEeC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCccccc--CCCCceEEcCCchHHHHHHHHHHH
Q 010125 101 PSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLF--SGNGGGVIQGTTCEAILCTLTAAR 178 (517)
Q Consensus 101 ~~~~~~~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~--~~~~~g~~t~ggt~a~~~al~~ar 178 (517)
++++++++.+++++++++|++...|..+|..+++|+++++|+++++|++..+.. .+.++|++|+|||+||++|+.++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~ 160 (486)
T 1js3_A 81 PTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAAR 160 (486)
T ss_dssp CCCCCHHHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhCcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999864311 012468999999999999999998
Q ss_pred HHHHHHhccc-C-------CCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCc
Q 010125 179 DRVLNKIGRE-N-------ISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLI 250 (517)
Q Consensus 179 ~~~~~~~g~~-~-------~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~ 250 (517)
+...++.+.. + .++.+|++|+.+|+|+.++++.+|+ +++.||++. +|+||+++|+++|++++++|..
T Consensus 161 ~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~---~v~~v~~d~--~~~~d~~~L~~~i~~~~~~g~~ 235 (486)
T 1js3_A 161 TKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGV---KLKAIPSDG--KFAMRASALQEALERDKAAGLI 235 (486)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTC---EEEEECCCT--TSCCCHHHHHHHHHHHHHTTCE
T ss_pred HHHhhhhhccCccchhcccCCCEEEEECCCCcHHHHHHHHhCCC---ceEEeecCC--CCCCCHHHHHHHHHHHHhCCCC
Confidence 7654321110 0 0245789999999999999999999 899999974 6899999999999999999999
Q ss_pred ceEEEeeccCCccccccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEE
Q 010125 251 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW 330 (517)
Q Consensus 251 p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~ 330 (517)
|++|++++|+|++|.+||+++|+++|++||+|+|||+|||++.+.++++++.+.+++++|++++|+|||+++|++||+++
T Consensus 236 p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G~l~ 315 (486)
T 1js3_A 236 PFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMW 315 (486)
T ss_dssp EEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEE
T ss_pred ceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcceEEEE
Confidence 99999999999999999999999999999999999999999988888788777788899999999999999999999999
Q ss_pred EeCchhHHhhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC
Q 010125 331 VKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGD 410 (517)
Q Consensus 331 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~ 410 (517)
++++..+.+.+...+.|+...........++.+++++++|++.++++|++++.+|.+++++++++..++++++.+.|+++
T Consensus 316 ~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 395 (486)
T 1js3_A 316 VKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQD 395 (486)
T ss_dssp ESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99987656667666788865432112345666788999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCC
Q 010125 411 KRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGAT 490 (517)
Q Consensus 411 ~~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~ 490 (517)
|+++++.+|.+++++|++.+. +..+.++.++|.++|.++++++.+.+..++|++++++
T Consensus 396 ~~~~~~~~~~~~~v~f~~~~~----------------------~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~ 453 (486)
T 1js3_A 396 PRFEVCAEVTLGLVCFRLKGS----------------------DGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSR 453 (486)
T ss_dssp TTEEECSCCCSSEEEEEESSC----------------------HHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCT
T ss_pred CCeEEeCCCceeEEEEEecCh----------------------HHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCC
Confidence 999998778899999998754 3456788888988998888888888899999999899
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhh
Q 010125 491 LTEKRHVVVAWTVVQQHLEAFQSA 514 (517)
Q Consensus 491 ~t~~~di~~l~~~l~~~~~~l~~~ 514 (517)
.++++||+++++.|+++++++.++
T Consensus 454 ~~t~~di~~~~~~l~~~~~~~~~~ 477 (486)
T 1js3_A 454 KVESGHVRLAWEHIRGLAAELLAA 477 (486)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999998887654
No 4
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=100.00 E-value=2.1e-68 Score=568.10 Aligned_cols=478 Identities=21% Similarity=0.358 Sum_probs=417.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCC--CCCCCCChhhHhhh---CCCCCCCCCCCHHHHHHHHHHhhcCCCCCCCCC
Q 010125 20 PLDSEEFRRQGHMIIDFIADYYKNVEKY--PVRSQVEPGYLQKV---LPESAPNNPESMETILQDVQQHIVPGITHWQSP 94 (517)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~---~~~~~p~~~~~~~~il~~~~~~~~~~~~~~~~p 94 (517)
..+.+++++++++++|.+++|++++.++ +|.+...|++++.. ++..+|++|.+++++++++.+.+.++ ++|+||
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~p 96 (511)
T 3vp6_A 18 KNGEEQTVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDCRDTLKYG-VRTGHP 96 (511)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHTCTTSCSCCCCCHHHHHHCBTTBCCCCCSSCCCHHHHHHHHHHHHHTS-CCTTST
T ss_pred CCChHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHhhcc-CCCCCC
Confidence 3678999999999999999999998765 47788999999999 88999999999999999999887666 567999
Q ss_pred ccceeCCCCCChHHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHH
Q 010125 95 NYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTL 174 (517)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al 174 (517)
+||||+++++++++++++++++.+|++...|..+|+.+++|+++++|+++++|++.+. .+|+||+|||+||+.|+
T Consensus 97 ~f~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~-----~~~~~t~ggt~a~~~al 171 (511)
T 3vp6_A 97 RFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKD-----GDGIFSPGGAISNMYSI 171 (511)
T ss_dssp TEESSSSCCCCHHHHHHHHHHHHHCCCSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSS-----CEEEEESSHHHHHHHHH
T ss_pred CceEeecCCCcHHHHHHHHHHHHhccCCCCcccCchHHHHHHHHHHHHHHHhCCCCCC-----CceEECCchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998531 37999999999999999
Q ss_pred HHHHHHHH---HHhcccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcc
Q 010125 175 TAARDRVL---NKIGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIP 251 (517)
Q Consensus 175 ~~ar~~~~---~~~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p 251 (517)
.++|++++ ++.|..+.++.+|++|+.+|+|+.++++++|+|..+++.||++. +|+||+++|+++|+++.++|..|
T Consensus 172 ~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~~~~~g~g~~~~~~v~~d~--~~~~d~~~Le~~i~~~~~~g~~~ 249 (511)
T 3vp6_A 172 MAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNE--RGKIIPADFEAKILEAKQKGYVP 249 (511)
T ss_dssp HHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHHHHHcCCCCCcEEEeecCC--CCccCHHHHHHHHHHHHhcCCCc
Confidence 99988642 22243334688999999999999999999999888899999985 58999999999999988889899
Q ss_pred eEEEeeccCCccccccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEE
Q 010125 252 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWV 331 (517)
Q Consensus 252 ~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~ 331 (517)
++|++++|+|++|.+|||++|+++|++||+|+|||+||+++.+.+++++..+.|++++||+++|+|||+++|.+||++++
T Consensus 250 ~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~ 329 (511)
T 3vp6_A 250 FYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILV 329 (511)
T ss_dssp EEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEE
T ss_pred EEEEEecCCCCCcccccHHHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEEEE
Confidence 99999999999999999999999999999999999999999999998888888999999999999999999999999999
Q ss_pred eCchhHHhhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 010125 332 KDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDK 411 (517)
Q Consensus 332 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~ 411 (517)
+++..+...+...+.|+..........+++.+++++++|++.++++|++++.+|.+|+++++++..++++++++.|++.|
T Consensus 330 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~p 409 (511)
T 3vp6_A 330 KEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNRE 409 (511)
T ss_dssp SSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred eCHHHHHHHhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99987777778888999765433334566788999999999999999999999999999999999999999999999999
Q ss_pred CeEEec--CCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECC-EeEEEEEec
Q 010125 412 RFEIVF--PCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGG-IYAIRFATG 488 (517)
Q Consensus 412 ~~~l~~--~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g-~~~lR~~~~ 488 (517)
+|+++. +|.+++++|++.|...+... .........+..+.++.++|.++|.+++..+...+ ..++|++++
T Consensus 410 g~~l~~~~~p~~~~v~f~~~p~~~~~~~-------~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~ 482 (511)
T 3vp6_A 410 EFEMVFNGEPEHTNVCFWYIPQSLRGVP-------DSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVIS 482 (511)
T ss_dssp TEEESSSSCCSSSCEEEEECCGGGSSCC-------CCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCC
T ss_pred CEEEEecCCCCeEEEEEEEeCccccccc-------cchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEec
Confidence 999987 68899999999876321100 00011223456678899999999988777655555 468999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHH
Q 010125 489 ATLTEKRHVVVAWTVVQQHLEAFQ 512 (517)
Q Consensus 489 ~~~t~~~di~~l~~~l~~~~~~l~ 512 (517)
++.++++||+++++.|+++++.+.
T Consensus 483 ~~~~t~~di~~ll~~i~~~~~~~~ 506 (511)
T 3vp6_A 483 NPAATQSDIDFLIEEIERLGQDLH 506 (511)
T ss_dssp CTTCCHHHHHHHHHHHHHHHC---
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999988764
No 5
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=100.00 E-value=3.5e-65 Score=543.56 Aligned_cols=476 Identities=21% Similarity=0.356 Sum_probs=404.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCC--CCCCCCChhhHhhh---CCCCCCCCCCCHHHHHHHHHHhhcCCCCCCCCCc
Q 010125 21 LDSEEFRRQGHMIIDFIADYYKNVEKY--PVRSQVEPGYLQKV---LPESAPNNPESMETILQDVQQHIVPGITHWQSPN 95 (517)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~---~~~~~p~~~~~~~~il~~~~~~~~~~~~~~~~p~ 95 (517)
|+.++|+++++++++.+++|++++.++ ||.|...|+++++. ++..+|++|.+.+++++++.+.+.++. ++.||+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~p~ 94 (504)
T 2okj_A 16 NGEEQTVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDCRDTLKYGV-RTGHPR 94 (504)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHTCTTSCSCCCCCHHHHHSCBTTBCCCCCSSCCCHHHHHHHHHHHHHTSC-CTTCTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHHhhccC-CCCCCC
Confidence 899999999999999999999998774 49999999999999 899999999999999999988765554 556999
Q ss_pred cceeCCCCCChHHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHH
Q 010125 96 YFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLT 175 (517)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~ 175 (517)
|++|+++++.+++++++++.+++|++...|..+|..+++|+++++|+++++|++.+. .+++||+|||+||++++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~-----~~~~~t~ggtea~~~al~ 169 (504)
T 2okj_A 95 FFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKD-----GDGIFSPGGAISNMYSIM 169 (504)
T ss_dssp EESSSSCCCCHHHHHHHHHHHHHCCBSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSS-----CEEEEESSHHHHHHHHHH
T ss_pred EEEEccCCCCHHHHHHHHHHHhhccCCCchhhChHHHHHHHHHHHHHHHHhCCCCCC-----CCEEEeCCcHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998421 279999999999999999
Q ss_pred HHHHHHHH---HhcccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcce
Q 010125 176 AARDRVLN---KIGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPL 252 (517)
Q Consensus 176 ~ar~~~~~---~~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~ 252 (517)
++|++..+ +.|....++.+|++|+.+|+|+.++++.+|+|.++++.||++. +|+||+++|+++|+++.++|..|+
T Consensus 170 ~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~g~~~~ 247 (504)
T 2okj_A 170 AARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNE--RGKIIPADFEAKILEAKQKGYVPF 247 (504)
T ss_dssp HHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHHcCCCcccEEEEecCC--CCCCCHHHHHHHHHHHHHCCCCce
Confidence 99875321 1121112356899999999999999999999776899999974 689999999999998888888899
Q ss_pred EEEeeccCCccccccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEe
Q 010125 253 FLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVK 332 (517)
Q Consensus 253 ~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~ 332 (517)
+|++++|+|++|.+||+++|+++|++||+|+|||+||+++.+.+++++..+.+++++||+++|+|||+++|++||+++++
T Consensus 248 ~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~ 327 (504)
T 2okj_A 248 YVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVK 327 (504)
T ss_dssp EEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEES
T ss_pred EEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEE
Confidence 99999999999999999999999999999999999999999888887777788889999999999999999999999999
Q ss_pred CchhHHhhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 010125 333 DPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKR 412 (517)
Q Consensus 333 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~ 412 (517)
++..+...+...++|+..........+++.+++++++||++++++|++++.+|.+|+++++++..++++++.+.|+++|+
T Consensus 328 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~ 407 (504)
T 2okj_A 328 EKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREE 407 (504)
T ss_dssp STTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred CHHHHHHHhcCCCccccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 87666656667788886543222223567778899999999999999999999999999999999999999999999999
Q ss_pred eEEec--CCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCE-eEEEEEecC
Q 010125 413 FEIVF--PCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGI-YAIRFATGA 489 (517)
Q Consensus 413 ~~l~~--~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~-~~lR~~~~~ 489 (517)
|+++. +|..+++||++.+....... ....-....+..+.++.++|.++|.++++++.+.+. .++|+++++
T Consensus 408 ~~~~~~~~p~~~~v~f~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~ 480 (504)
T 2okj_A 408 FEMVFNGEPEHTNVCFWYIPQSLRGVP-------DSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISN 480 (504)
T ss_dssp EEESSSSCCSSSCEEEEECCGGGSSCC-------CCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCC
T ss_pred EEEEecCCCCeEEEEEEEeCccccccc-------cchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCC
Confidence 99986 58889999998653110000 000001122334678889999999888877777664 799999988
Q ss_pred CCCcHHHHHHHHHHHHHHHHHH
Q 010125 490 TLTEKRHVVVAWTVVQQHLEAF 511 (517)
Q Consensus 490 ~~t~~~di~~l~~~l~~~~~~l 511 (517)
+.++++||+++++.|+++++++
T Consensus 481 ~~~t~edi~~~~~~l~~~~~~~ 502 (504)
T 2okj_A 481 PAATQSDIDFLIEEIERLGQDL 502 (504)
T ss_dssp TTCCHHHHHHHHHHHHHHHTC-
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887654
No 6
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=100.00 E-value=2.7e-64 Score=538.02 Aligned_cols=480 Identities=21% Similarity=0.328 Sum_probs=399.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHH-HHHhcCC--CCCCCCCChhhHhhhCCCCCCCCCCCHHHHHHHHHHhhcCCCCC
Q 010125 14 SGSFTNPLDSEEFRRQGHMIIDFIAD-YYKNVEK--YPVRSQVEPGYLQKVLPESAPNNPESMETILQDVQQHIVPGITH 90 (517)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~l~~~~~~~~p~~~~~~~~il~~~~~~~~~~~~~ 90 (517)
.+-+..+|+.++|++++++++|++++ |++++.+ +||.|...|++++..++..+|++|.+.+++++++.+.+.++. +
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~p~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~ 105 (515)
T 2jis_A 27 EALPSLAGDPVAVEALLRAVFGVVVDEAIQKGTSVSQKVCEWKEPEELKQLLDLELRSQGESQKQILERCRAVIRYSV-K 105 (515)
T ss_dssp --CCCCSCCHHHHHHHHHHHHHHHHHHTTTGGGCTTSCSCCCCCHHHHHHHHCCCCCSSCCCHHHHHHHHHHHHHHSC-C
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCHHHHHhhcccCCCCCCCCHHHHHHHHHHHhcCCC-C
Confidence 34445669999999999999999999 9998875 499999999999999999999999999999999998766655 4
Q ss_pred CCCCccceeCCCCCChHHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHH
Q 010125 91 WQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAI 170 (517)
Q Consensus 91 ~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~ 170 (517)
+.||+|++|+++++.+++++++++++.+|++...|..+|..+++|+++++|+++++|++.. +++||+|||+||
T Consensus 106 ~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~s~~~~~le~~~~~~la~l~g~~~~-------~~~~t~ggtea~ 178 (515)
T 2jis_A 106 TGHPRFFNQLFSGLDPHALAGRIITESLNTSQYTYEIAPVFVLMEEEVLRKLRALVGWSSG-------DGIFCPGGSISN 178 (515)
T ss_dssp TTSTTEESSSCCCCCHHHHHHHHHHHHHCCCTTCTTTCHHHHHHHHHHHHHHHHHHTCSSC-------EEEEESSHHHHH
T ss_pred CCCCCeEEEeeCCCCHHHHHHHHHHHHhccCCCchhhchHHHHHHHHHHHHHHHHhCCCCC-------CeEEcCCcHHHH
Confidence 5699999999999999999999999988999989999999999999999999999999854 799999999999
Q ss_pred HHHHHHHHHHHH---HHhcccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhc
Q 010125 171 LCTLTAARDRVL---NKIGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEV 247 (517)
Q Consensus 171 ~~al~~ar~~~~---~~~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~ 247 (517)
++|+.++|++.. ++.|..+.++.+|++|+.+|+|+.++++.+|+|..+++.||++. +++||+++|+++|+++.++
T Consensus 179 ~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~ 256 (515)
T 2jis_A 179 MYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKADE--RGKMVPEDLERQIGMAEAE 256 (515)
T ss_dssp HHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHHcCCCCCcEEEEecCC--CCcCCHHHHHHHHHHHHhC
Confidence 999999987542 21232223466899999999999999999999877899999974 6799999999999988777
Q ss_pred CCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcce
Q 010125 248 GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCC 327 (517)
Q Consensus 248 g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g 327 (517)
|..|++|++++|+|++|.++|+++|+++|++||+|+|||+||+++.+.+++++..+.+++++|++++|+|||+++|++||
T Consensus 257 g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G 336 (515)
T 2jis_A 257 GAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCS 336 (515)
T ss_dssp TCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCE
T ss_pred CCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCee
Confidence 87899999999999999999999999999999999999999999999888877778888899999999999999999999
Q ss_pred EEEEeCc-hhHHhhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 010125 328 CLWVKDP-RALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERL 406 (517)
Q Consensus 328 ~l~~~~~-~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~ 406 (517)
+++++++ ..+.+.+...++|+.+.........++..++++++||++++++|++++.+|.+|+++++++..++++++.+.
T Consensus 337 ~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~ 416 (515)
T 2jis_A 337 ALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEE 416 (515)
T ss_dssp EEEESCCSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988 555556666778886543222223456677889999999999999999999999999999999999999999
Q ss_pred HhcCCCeEEecCCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECC-EeEEEE
Q 010125 407 VSGDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGG-IYAIRF 485 (517)
Q Consensus 407 l~~~~~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g-~~~lR~ 485 (517)
|+++|+++++.+|..++++|++.|...+... ....-...++..+..+.+.+.++|.++++.+.+.+ ..++|+
T Consensus 417 L~~~~g~~~~~~~~~~~v~f~~~p~~~~~~~-------~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRi 489 (515)
T 2jis_A 417 MKKREGFELVMEPEFVNVCFWFVPPSLRGKQ-------ESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRV 489 (515)
T ss_dssp HHTSTTEEESSCCSSSEEEEEECCGGGTTCT-------TSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEE
T ss_pred HhcCCCEEEeCCCCeeEEEEEEeCccccccc-------cchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEE
Confidence 9999999998888888999998653110000 00001122344566788889999998877766655 479999
Q ss_pred EecCCCCcHHHHHHHHHHHHHHHHH
Q 010125 486 ATGATLTEKRHVVVAWTVVQQHLEA 510 (517)
Q Consensus 486 ~~~~~~t~~~di~~l~~~l~~~~~~ 510 (517)
+++++.++++||+++++.|++++++
T Consensus 490 s~~~~~~t~edid~~~~~l~~~~~~ 514 (515)
T 2jis_A 490 VVANSALTCADMDFLLNELERLGQD 514 (515)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 9988999999999999999887653
No 7
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=100.00 E-value=3.5e-63 Score=527.24 Aligned_cols=459 Identities=22% Similarity=0.373 Sum_probs=389.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHhhhCCC-CCCCCCCCHHHHHHHHHHhhcCCCCCCCCCccce
Q 010125 20 PLDSEEFRRQGHMIIDFIADYYKNVEKYPVRSQVEPGYLQKVLPE-SAPNNPESMETILQDVQQHIVPGITHWQSPNYFA 98 (517)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~p~~~~~~~~il~~~~~~~~~~~~~~~~p~~~~ 98 (517)
+++.++||+++++++|.+.+|+++.+ .| .+...|+++++.++. .+|++|.+++++++++.+.+.++.++|+||+||+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~ 105 (497)
T 2qma_A 28 ELGSAEFASVMSHTTSAMKSVFEQVN-AP-YSGMDPKALEDAINAVDLDNKNAPLKSVIDDVAELVAKNAIFTQHPDCIA 105 (497)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHCC-SS-SCCCCHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHTTTTSCCTTSTTBCS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcc-CC-CCCCCHHHHHHhccccCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCeeE
Confidence 67899999999999999999999984 44 678889999999887 4799999999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHH
Q 010125 99 YFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAAR 178 (517)
Q Consensus 99 ~~~~~~~~~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar 178 (517)
|+.+++.+++++++++...+|++...|..+|..+++|+++++|+++++|+++. ..++||+|||+||+.++.++|
T Consensus 106 ~~~~~~~~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~------~~~~~t~ggt~a~~~al~~ar 179 (497)
T 2qma_A 106 HLHTPPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLSEK------ADGIFTSGGTQSNQMGLMLAR 179 (497)
T ss_dssp SSCCCCBHHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTT------CEEEEESSHHHHHHHHHHHHH
T ss_pred eCCCCCcHHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHhCCCCC------CCeEEcCCchHHHHHHHHHHH
Confidence 99999999999999999999998889999999999999999999999999753 279999999999999999998
Q ss_pred HHHHHH--------hcccC-CCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCC
Q 010125 179 DRVLNK--------IGREN-ISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGL 249 (517)
Q Consensus 179 ~~~~~~--------~g~~~-~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~ 249 (517)
+++..+ .|... .++.+|++|+.+|+|+.++++.+|+|.++++.||++. +++||+++|+++|+++.++|.
T Consensus 180 ~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~ 257 (497)
T 2qma_A 180 DWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANA--DGTMDITKLDEVIAQAKAEGL 257 (497)
T ss_dssp HHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCT--TSSBCGGGHHHHHHHHHHTTC
T ss_pred HHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEecCC--CCcCCHHHHHHHHHHHHHCCC
Confidence 765421 12110 0245899999999999999999999766899999974 689999999999998877777
Q ss_pred cceEEEeeccCCccccccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEE
Q 010125 250 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL 329 (517)
Q Consensus 250 ~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l 329 (517)
+|++|++++|+|++|.+||+++|+++|++||+|+|||+||+++...++ ++..+.+++++|++++|+|||+++|++||++
T Consensus 258 ~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~-~~~~~~gi~~~D~i~~s~hK~l~~p~~~G~l 336 (497)
T 2qma_A 258 IPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILSS-HKSRLKGVERAHSISVDFHKLFYQTISCGAL 336 (497)
T ss_dssp EEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGST-TGGGGTTGGGCSEEEEETTTTTCCCSSCEEE
T ss_pred cceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhCc-chHhhcCcccCCEEEEcchhccCCCcceEEE
Confidence 788999999999999999999999999999999999999999988776 6666778889999999999999999999999
Q ss_pred EEeCchhHHhhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhc
Q 010125 330 WVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSG 409 (517)
Q Consensus 330 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~ 409 (517)
+++++..+ +.+...+.|+..... ..+++..++++++|+++++++|++++.+|.+++++++++..++++++.+.|++
T Consensus 337 ~~~~~~~~-~~~~~~~~yl~~~~~---~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~ 412 (497)
T 2qma_A 337 LVNDKSNF-KFLLHHADYLNREHD---ELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRT 412 (497)
T ss_dssp EESCGGGG-GGGCC-----------------------CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCHHHH-HHhcCCchhcCCccc---cCCCccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99988754 345555677754321 13456677889999999999999999999999999999999999999999999
Q ss_pred CCCeEEecCCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecC
Q 010125 410 DKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGA 489 (517)
Q Consensus 410 ~~~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~ 489 (517)
+|+++++.+|..++++|++.+... ..+.++.++.+.+.++|.++++++.+.+..++|+++++
T Consensus 413 ~~~~~~~~~~~~~~v~f~~~~~~~------------------~~~~l~~~l~~~l~~~G~~~~~~~~~~g~~~lRis~~~ 474 (497)
T 2qma_A 413 NDQFELLAEPSLSTVLFRATHETA------------------DLDELNKALRLEALTRGIAVLGETIVDGKTALKFTILN 474 (497)
T ss_dssp CTTEEECSCCSSSEEEEEECCSSS------------------CHHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCC
T ss_pred CCCeEEEcCCCceEEEEEEcCCcc------------------CHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecC
Confidence 999999888889999999976420 12456778888899999988888888888999999988
Q ss_pred CCCcHHHHHHHHHHHHHHHHHH
Q 010125 490 TLTEKRHVVVAWTVVQQHLEAF 511 (517)
Q Consensus 490 ~~t~~~di~~l~~~l~~~~~~l 511 (517)
+.++++||+++++.|+++++++
T Consensus 475 ~~~t~edi~~~~~~l~~~~~~~ 496 (497)
T 2qma_A 475 PCLTTSDFESLLSKINMLAVEL 496 (497)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999987754
No 8
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=100.00 E-value=5.3e-49 Score=413.26 Aligned_cols=411 Identities=15% Similarity=0.194 Sum_probs=320.1
Q ss_pred hhhHhhhCCCCCCCCCCCHHHHHHHHHHhh-cCCCCCCCCCccceeCCCCCChHHHHHHHHHhcccccccccccChhhHH
Q 010125 55 PGYLQKVLPESAPNNPESMETILQDVQQHI-VPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATE 133 (517)
Q Consensus 55 ~~~l~~~~~~~~p~~~~~~~~il~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~sp~~~~ 133 (517)
...++..++..+|++|.+.++|++++.+.+ .++..+++||+|++. + .+..+.+++..++|.+...|..+|...+
T Consensus 7 ~~~~~~~~~~~lp~~g~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~----~-~~~~v~e~~~~a~~~~~~~~~~~~~~~~ 81 (452)
T 2dgk_A 7 KSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQT----W-DDENVHKLMDLSINKNWIDKEEYPQSAA 81 (452)
T ss_dssp --------CCSCCCSCCCHHHHHHHHHHHGGGSCCCTTBCSCCSCC----C-CCHHHHHHHHHTTTCBTTCTTTCHHHHH
T ss_pred hHHhhhccCCCCCCCCCCHHHHHHHHHHHhcCCCCCccCCCCeeCC----C-chHHHHHHHHHHhccCCCChhhChhHHH
Confidence 445566777889999999999999999987 688888999999871 1 2246899999999988888999999999
Q ss_pred HHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCC--CCeEEEeCCCCchHHHHHHHH
Q 010125 134 LENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENI--SKLIVYGSDQTHCALQKAAQI 211 (517)
Q Consensus 134 lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~--~~~~v~~s~~~H~s~~kaa~~ 211 (517)
+|+++++|+++++|++.+.. +...+++|+|||+||++++.++++...++....|. .++.|++++ +|+++.++++.
T Consensus 82 l~~~~~~~la~l~g~~~~~~--~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~ 158 (452)
T 2dgk_A 82 IDLRCVNMVADLWHAPAPKN--GQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARY 158 (452)
T ss_dssp HHHHHHHHHHHHTTCCCCTT--SCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccc--cCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHHHHHHH
Confidence 99999999999999986410 00248999999999999999987643321111111 135788898 99999999999
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHh------CCeEEc
Q 010125 212 VGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQF------GIWVHV 285 (517)
Q Consensus 212 ~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~------gi~lhv 285 (517)
+|+ +++.||+++ ++++||+++|+++|+++ +.+|++++|+|++|.++|+++|+++|++| |+|+||
T Consensus 159 ~G~---~v~~v~~~~-~~~~~d~~~l~~~i~~~------t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~v 228 (452)
T 2dgk_A 159 WDV---ELREIPMRP-GQLFMDPKRMIEACDEN------TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHI 228 (452)
T ss_dssp TTC---EEEECCCBT-TBCSCCHHHHHHHCCTT------EEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEE
T ss_pred cCc---eEEEEecCC-CCCeECHHHHHHHHhhC------CEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEE
Confidence 999 999999975 36899999999999764 35899999999999999999999999996 999999
Q ss_pred ccccccccc--cCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCccccCCccccccccccCCC
Q 010125 286 DAAYAGSAC--ICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKD 363 (517)
Q Consensus 286 DaA~g~~~~--~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~ 363 (517)
|+||+++.. ..+..+..+ .+.++|++++++|||+++|.++|+++++++..+.+.+...+.|+... +..
T Consensus 229 D~a~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~hK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 298 (452)
T 2dgk_A 229 DAASGGFLAPFVAPDIVWDF-RLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQ---------IGT 298 (452)
T ss_dssp ECTTGGGTHHHHCTTCCCST-TSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECCTTCC---------EEE
T ss_pred EcccHHHHHHhhCccchhhc-CCCCCcEEEECcccccCCCCCeEEEEEcCHHHHHHHhccCccccCCC---------CCC
Confidence 999998765 233222222 25689999999999999999999999998754434444456666421 123
Q ss_pred ccccCCCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC----CCeeEEEEEecCCCcchhhh
Q 010125 364 WQITLSRRF-RSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFP----CHFAVVCFRVSPSPVLMDKL 438 (517)
Q Consensus 364 ~~~~~sr~~-~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~----~~~~~v~f~~~~~~~~~~~~ 438 (517)
++++++|++ .++++|++++.+|.+++++++++..++++++.+.|+++++++++.+ +..++++|++.+...
T Consensus 299 ~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~----- 373 (452)
T 2dgk_A 299 FAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGED----- 373 (452)
T ss_dssp CCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSEEEEEECTTCC-----
T ss_pred cccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCeEEEEEEecCccc-----
Confidence 456778887 7789999999999999999999999999999999999988999864 578999999865310
Q ss_pred hhhhhccccchHHHHHHH-HHHHHHHHHhcCcE---EEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHHhh
Q 010125 439 KTKYVNCLLSEEEQINEF-NRELLESINASGKA---YMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHLEAFQSA 514 (517)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~g~~---~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l~~~ 514 (517)
+.. ..++.++|.++|+. +..++.+.+..++|++++++. +++|++++++.|+++.+++.+.
T Consensus 374 ---------------~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~-t~e~id~li~~l~~~~~~~~~~ 437 (452)
T 2dgk_A 374 ---------------PGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGF-EMDFAELLLEDYKASLKYLSDH 437 (452)
T ss_dssp ---------------CSCCHHHHHHHHHHTTCBCCEEECSTTCTTCEEEEEECCTTC-CHHHHHHHHHHHHHHHHHHHHC
T ss_pred ---------------ccCCHHHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEecCCC-CHHHHHHHHHHHHHHHHHHHhC
Confidence 001 25677788888873 433444456779999997655 5889999999999998877643
No 9
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=100.00 E-value=2.5e-46 Score=397.42 Aligned_cols=414 Identities=17% Similarity=0.235 Sum_probs=332.4
Q ss_pred CCCCCChhhHhhhCCC-CCCCCCCCHHHHHHHHHHhhcCCCCCCCCCcc-ceeCCCCCChHHHHHHHHHhcccccccccc
Q 010125 49 VRSQVEPGYLQKVLPE-SAPNNPESMETILQDVQQHIVPGITHWQSPNY-FAYFPSSGSIAGFLGEMLSSGFNIVGFNWI 126 (517)
Q Consensus 49 ~~~~~~~~~l~~~~~~-~~p~~~~~~~~il~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~ 126 (517)
..|...+.++++.++. .+|+.|.+.+++++.+.+.+..+ .||++ ++.+. +..++..+.+++...++.+...|.
T Consensus 14 ~~~~~~~~~~~~~lp~~~~p~~~~~~~~~~~~~~~~i~l~----gnp~~~l~s~~-t~~~~~~v~~~l~~~~~~~~~~~~ 88 (502)
T 3hbx_A 14 VHSTFASRYVRTSLPRFKMPENSIPKEAAYQIINDELMLD----GNPRLNLASFV-TTWMEPECDKLIMSSINKNYVDMD 88 (502)
T ss_dssp CSCTTTSSGGGSCCCSSSCCSSCCCHHHHHHHHHHHGGGS----CCGGGBTTCCS-CCCCCHHHHHHHHHTTTCBTTCTT
T ss_pred ccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHhccC----CCCCceecccc-CCCCCHHHHHHHHHHhccCCCChh
Confidence 4466778999999998 89999999999999999876432 57774 33322 233445688889999999888889
Q ss_pred cChhhHHHHHHHHHHHHHHcCCC--cccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHh---cccCCCCeEEEeCCCC
Q 010125 127 SSPAATELENIVMDWLGQMLKLP--KSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKI---GRENISKLIVYGSDQT 201 (517)
Q Consensus 127 ~sp~~~~lE~~v~~~l~~l~g~~--~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~---g~~~~~~~~v~~s~~~ 201 (517)
.+|...++|+++++|+++++|++ ++. ...|++|+|||+||+.++.+++....++. |.. ..++.|++++.+
T Consensus 89 ~~p~~~~le~~~~~~la~l~g~~~~~~~----~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~-~~~~~vi~~~~~ 163 (502)
T 3hbx_A 89 EYPVTTELQNRCVNMIAHLFNAPLEEAE----TAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKP-VDKPNIVTGANV 163 (502)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCCSSC----CCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCC-CSCCEEEEETTC
T ss_pred cChhHHHHHHHHHHHHHHHhCCCccccc----CCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCC-CCCcEEEEcCCc
Confidence 99999999999999999999998 321 12578899999999999998877654332 321 234589999999
Q ss_pred chHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHh--
Q 010125 202 HCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQF-- 279 (517)
Q Consensus 202 H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~-- 279 (517)
|+++.++++.+|+ .++.||+++ ++++||+++|+++|+++ |.+|+++.++|++|.++|+++|+++|++|
T Consensus 164 h~s~~~~~~~~G~---~~~~v~~~~-~~~~~d~~~l~~~i~~~------t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~ 233 (502)
T 3hbx_A 164 QVCWEKFARYFEV---ELKEVKLSE-GYYVMDPQQAVDMVDEN------TICVAAILGSTLNGEFEDVKLLNDLLVEKNK 233 (502)
T ss_dssp CHHHHHHHHHTTC---EEEEECCBT-TBCSCCHHHHHHHCCTT------EEEEEEEBSCTTTCCBCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCc---eeEEEecCC-CcCcCCHHHHHHHHhhC------CEEEEEecCCCCCCcccCHHHHHHHHHHhhh
Confidence 9999999999999 999999975 35899999999999765 35899999999999999999999999999
Q ss_pred ----CCeEEcccccccccc--cCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCccccCCccc
Q 010125 280 ----GIWVHVDAAYAGSAC--ICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKAT 353 (517)
Q Consensus 280 ----gi~lhvDaA~g~~~~--~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~ 353 (517)
|+|+|||+||+++.. ..+..+..+. +.++|++++++|||+++|.++|+++++++..+...+...+.|+....
T Consensus 234 ~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~-~~~~D~v~~s~hK~l~~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~- 311 (502)
T 3hbx_A 234 ETGWDTPIHVDAASGGFIAPFLYPELEWDFR-LPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQ- 311 (502)
T ss_dssp HHCCCCCEEEECTTGGGTHHHHCTTCCCSTT-STTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECSSSSCE-
T ss_pred ccCCCCeEEEECCccchhhhhhCcccccccC-CCCceEEEECcccccCCCCCeEEEEEeCHHHhhHHhccCcccccCCC-
Confidence 999999999988763 2344433332 56899999999999999999999999988766555666667776432
Q ss_pred cccccccCCCccccCCCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC-CCeeEEEEEecCC
Q 010125 354 ESMQVVDYKDWQITLSRRF-RSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFP-CHFAVVCFRVSPS 431 (517)
Q Consensus 354 ~~~~~~~~~~~~~~~sr~~-~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~-~~~~~v~f~~~~~ 431 (517)
..+++.++|+. .++++|++++.+|.+++.+++++..+++++|.+.|+++++|+++.+ +.+++++|++.+.
T Consensus 312 --------~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~ 383 (502)
T 3hbx_A 312 --------PTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDS 383 (502)
T ss_dssp --------EECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSSSSEEEEEESSC
T ss_pred --------CCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCCceEEEEEecCC
Confidence 13456677775 6789999999999999999999999999999999999988999876 7899999999753
Q ss_pred CcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEE---eeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 010125 432 PVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYM---THAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHL 508 (517)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~---~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~ 508 (517)
. .....++.++|.++|+++. .+....+..++|++++ ..++++|++++++.|+++.
T Consensus 384 ~---------------------~~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~-~~~t~edid~li~~L~~~l 441 (502)
T 3hbx_A 384 S---------------------CHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIR-EDFSRTLAERLVIDIEKVM 441 (502)
T ss_dssp S---------------------SCCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECC-TTCCHHHHHHHHHHHHHHH
T ss_pred C---------------------cCCHHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeC-CCCCHHHHHHHHHHHHHHH
Confidence 1 0012467888888998632 2233346689999985 5778889999999999998
Q ss_pred HHHHhh
Q 010125 509 EAFQSA 514 (517)
Q Consensus 509 ~~l~~~ 514 (517)
+++.+.
T Consensus 442 ~~l~~~ 447 (502)
T 3hbx_A 442 RELDEL 447 (502)
T ss_dssp HHHHTC
T ss_pred HHHHhC
Confidence 887653
No 10
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-41 Score=356.60 Aligned_cols=395 Identities=16% Similarity=0.203 Sum_probs=305.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhcC-CCCCCCCCccceeCCCC-CChHHHHHHHHHhcccccccccccChhhHHHHHHHHH
Q 010125 63 PESAPNNPESMETILQDVQQHIVP-GITHWQSPNYFAYFPSS-GSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMD 140 (517)
Q Consensus 63 ~~~~p~~~~~~~~il~~~~~~~~~-~~~~~~~p~~~~~~~~~-~~~~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~ 140 (517)
...+|++|.+.+++++++.+.... +...|.+|+|++++..+ +.....+.+.+....+.+...|..+|+..++|+++.+
T Consensus 35 ~~~lp~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 114 (497)
T 3mc6_A 35 FPQLPSNGIPQDDVIEELNKLNDLIPHTQWKEGKVSGAVYHGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVS 114 (497)
T ss_dssp CSSCCSSCCCHHHHHHHHHHHHHSSCCCCGGGTCBSSSCSCCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHH
T ss_pred ccCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCCCEeeecCCCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHH
Confidence 356899999999999999987653 56788999999987544 3444555666666666677788999999999999999
Q ss_pred HHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEE
Q 010125 141 WLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFR 220 (517)
Q Consensus 141 ~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~ 220 (517)
|+++++|++.. ...+++++|||+|+..++.++++...++.| .+++.|+++..+|.++.++++.+|+ +++
T Consensus 115 ~la~~~g~~~~-----~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g---~~~~~Vi~~~~~h~~~~~~~~~~G~---~~~ 183 (497)
T 3mc6_A 115 MVLRMFNAPSD-----TGCGTTTSGGTESLLLACLSAKMYALHHRG---ITEPEIIAPVTAHAGFDKAAYYFGM---KLR 183 (497)
T ss_dssp HHHHHTTCCTT-----TCCEEEESSHHHHHHHHHHHHHHHHHHHSC---CSSCEEEEETTSCHHHHHHHHHSCC---EEE
T ss_pred HHHHHhCCCCC-----CCeEEEcCcHHHHHHHHHHHHHHHHHhcCC---CCCceEEEeCCccHHHHHHHHHcCC---eEE
Confidence 99999999822 127899999999999999999876543322 2346899999999999999999999 999
Q ss_pred EEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEcccccccccccCcc--
Q 010125 221 AIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPE-- 298 (517)
Q Consensus 221 ~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~-- 298 (517)
.||++. +++++|+++|+++|+++ +.+|+++.++|++|.++|+++|+++|++||+|+|||+||+++...+-+
T Consensus 184 ~v~~~~-~~~~~d~~~l~~~i~~~------~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~ 256 (497)
T 3mc6_A 184 HVELDP-TTYQVDLGKVKKFINKN------TVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKA 256 (497)
T ss_dssp EECBCT-TTCSBCTTTTGGGCCSS------EEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTT
T ss_pred EEecCc-ccCcCCHHHHHHHHhhC------CEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhh
Confidence 999975 35799999999998754 458999999999999999999999999999999999999877643110
Q ss_pred ----ccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCccccCCccccccccccCCCccccCCCCC-C
Q 010125 299 ----FRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRF-R 373 (517)
Q Consensus 299 ----~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~-~ 373 (517)
....-....++|++++++|||+++|.++|+++++++......+...+.|.... +...++.++|.. .
T Consensus 257 ~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~g~~~~~~ 327 (497)
T 3mc6_A 257 GYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGGL---------YGSPTLAGSRPGAI 327 (497)
T ss_dssp TCCSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTTCTTSC---------BCCSSSCSSCBHHH
T ss_pred cccCCccccccCCCCcEEEECchhhcCCCCCceeEEecCHHHHhhhhcccccccCCC---------cCCcCcccCCcchh
Confidence 00010113468999999999999999999999988754322222223333211 122333333332 2
Q ss_pred chHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEecCCCeeEEEEEecCCCcchhhhhhhhhccccchHHH
Q 010125 374 SLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSG-DKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQ 452 (517)
Q Consensus 374 al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~-~~~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (517)
.+++|++++.++.+++++++++..++++++++.|++ +|+++++.++..++++|+....
T Consensus 328 ~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~~~~v~~~~~~~--------------------- 386 (497)
T 3mc6_A 328 VVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSVISFSSKTL--------------------- 386 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCCSSEEEEECTTT---------------------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCeeEEEEeCCCC---------------------
Confidence 357999999999999999999999999999999999 7999998788889999986432
Q ss_pred HHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHHh
Q 010125 453 INEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHLEAFQS 513 (517)
Q Consensus 453 ~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l~~ 513 (517)
...++.+.|.++|+.+... .....+|++++ .++++++++++++|+++.+++.+
T Consensus 387 ---~~~~l~~~L~~~Gi~v~~~---~~~~~~ri~~~--~~t~e~i~~~~~~L~~~l~~~~~ 439 (497)
T 3mc6_A 387 ---NIHELSDRLSKKGWHFNAL---QKPVALHMAFT--RLSAHVVDEICDILRTTVQELKS 439 (497)
T ss_dssp ---THHHHHHHHHTTTCBCEEC---CSSCCEEEECC--TTTTCTHHHHHHHHHHHHHHHTC
T ss_pred ---CHHHHHHHHHhCCEEEecC---CCCCeEEEEEe--CCCHHHHHHHHHHHHHHHHHHHh
Confidence 1356778888888754221 22346899986 45777999999999999887653
No 11
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=100.00 E-value=2.5e-40 Score=352.94 Aligned_cols=394 Identities=18% Similarity=0.169 Sum_probs=311.4
Q ss_pred CCCCCCCCCHHHHHHHHHHhhcCCCCCCCCCccceeCCC-CCChHHHHHHHHHhcccccccccccChhhHHHHHHHHHHH
Q 010125 64 ESAPNNPESMETILQDVQQHIVPGITHWQSPNYFAYFPS-SGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWL 142 (517)
Q Consensus 64 ~~~p~~~~~~~~il~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l 142 (517)
..+|++|.+.+++++++.+.+.++...|.+++|+|++.. .+..+..+.+.+....+.+...|..+|...++|+++++|+
T Consensus 69 ~~lp~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~l 148 (514)
T 3mad_A 69 ARLPRAGLPRAEILAEIAAMGAAESPAWRDGYASGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMT 148 (514)
T ss_dssp SSCCSSCCCHHHHHHHHHHHHHHHHHHHHTTCBSSSCSCCCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHH
Confidence 467999999999999999988888889999999998764 4566778888888888888888889999999999999999
Q ss_pred HHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEE
Q 010125 143 GQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAI 222 (517)
Q Consensus 143 ~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~v 222 (517)
++++|++... ....|++|+|||+||..++.++++...++.| .+++.|+++..+|.++.++++.+|+ +++.|
T Consensus 149 a~~~g~~~~~---~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g---~~~d~Vi~~~~~~~~~~~~~~~~G~---~v~~v 219 (514)
T 3mad_A 149 AHMLGGDAAG---GTVCGTVTSGGTESLLLAMKTYRDWARATKG---ITAPEAVVPVSAHAAFDKAAQYFGI---KLVRT 219 (514)
T ss_dssp HHHTTGGGGT---SCCEEEEESSHHHHHHHHHHHHHHHHHHHHC---CSSCEEEEETTSCTHHHHHHHHHTC---EEEEE
T ss_pred HHHcCCCCcc---CCcceEEcCcHHHHHHHHHHHHHHHhhhhcC---CCCCeEEEeCccchHHHHHHHHcCC---eeEEe
Confidence 9999998310 0015699999999999999999876433322 3457899999999999999999999 99999
Q ss_pred ecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEcccccccccccC------
Q 010125 223 KTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIC------ 296 (517)
Q Consensus 223 p~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~------ 296 (517)
|++. ++++|+++|+++|+++ +.+|+++.++|++|.++|+++|+++|++||+|+|||+||+++.+..
T Consensus 220 ~~~~--~~~~d~~~Le~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~ 291 (514)
T 3mad_A 220 PLDA--DYRADVAAMREAITPN------TVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGY 291 (514)
T ss_dssp CBCT--TSCBCHHHHHHHCCTT------EEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTC
T ss_pred eeCC--CCCCCHHHHHHHhccC------CEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhcCC
Confidence 9985 6799999999999764 3589999999999999999999999999999999999999876521
Q ss_pred --ccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCccccCCccccccccccCCCccccCCCCCC-
Q 010125 297 --PEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFR- 373 (517)
Q Consensus 297 --~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~- 373 (517)
+.+.. ...++|++++++|||+++|.++|+++++++......+.....|.... +..+++.+++...
T Consensus 292 ~~~~~~~---~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~gs~~~~~ 359 (514)
T 3mad_A 292 PVPPFDF---RLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGL---------YFSPTFAGSRPGAL 359 (514)
T ss_dssp CCCCCST---TSTTCCEEEECTTTTTCCCSSCEEEEESSHHHHTTTCEEESSCTTCS---------EEESSSCSSCCHHH
T ss_pred CCCcccc---cCCCCcEEEECchhccCCCCCeEEEEEeCHHHhccccccccccCCCc---------ccCCccCCCCchHH
Confidence 11111 23478999999999999999999999998765432211111222110 1122344455433
Q ss_pred chHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCeeEEEEEecCCCcchhhhhhhhhccccchHHHH
Q 010125 374 SLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQI 453 (517)
Q Consensus 374 al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (517)
.+++|++++.++.+++++++++..++++++.+.|+++++++++.++ .+++.|.....
T Consensus 360 ~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~~~~~~~~~~~---------------------- 416 (514)
T 3mad_A 360 SATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDP-LWVIAVASDEL---------------------- 416 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCC-SSEEEEECSSS----------------------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCC-eEEEEEeCCCC----------------------
Confidence 4689999999999999999999999999999999999999987655 45677765322
Q ss_pred HHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHHhh
Q 010125 454 NEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHLEAFQSA 514 (517)
Q Consensus 454 ~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l~~~ 514 (517)
...++.++|.++|+.+ .+. ....++|++++++.+++++++++++.|+++.+++.++
T Consensus 417 --~~~~l~~~L~~~Gi~v-~g~--~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~~ 472 (514)
T 3mad_A 417 --NIYQVMEEMAGRGWRL-NGL--HRPPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRAH 472 (514)
T ss_dssp --CHHHHHHHHHTTTCBC-EEE--TTTTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHHHC
T ss_pred --CHHHHHHHHHhcCCEe-ccC--CCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 1346778888888754 322 2235799999888888889999999999998887653
No 12
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=100.00 E-value=2.7e-38 Score=324.47 Aligned_cols=382 Identities=11% Similarity=0.059 Sum_probs=269.1
Q ss_pred CCCCCCCCCHHHHHHHHHHhhcCCCCCCC-----------------CCccceeCCCCCChHHHHHHHHHhcccccccccc
Q 010125 64 ESAPNNPESMETILQDVQQHIVPGITHWQ-----------------SPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWI 126 (517)
Q Consensus 64 ~~~p~~~~~~~~il~~~~~~~~~~~~~~~-----------------~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~ 126 (517)
..+|++|.+.++|...|.+.-.-...+|. .||||||+++. +..+|++.. |. .|.
T Consensus 21 ~~~p~~g~~~~~i~~~l~~~~~~d~~~~~~~~~~geregrv~~~~~~~r~~g~~hg~----~~~~d~l~~----~~-~~~ 91 (450)
T 3bc8_A 21 GKCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGI----GRSGDISAV----QP-KAA 91 (450)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHTBGGGCTTCCCCSSCCCCCSCHHHHHHTTTCCSCB----CC-----------CC-SBH
T ss_pred ccCCccCCCHHHHHHHHHHHhhCCCCccccccccCcccceEecccccCCccceecch----hHHHHHHHh----Cc-ccc
Confidence 36899999999999888875444444443 27899999876 555677776 33 788
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCch-HHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHH
Q 010125 127 SSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTC-EAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCAL 205 (517)
Q Consensus 127 ~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt-~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~ 205 (517)
.+|+...+|+.+..|+.+++|+|..+ ++++++|+| +++.++|.++|... .+...|+++..+|.|+
T Consensus 92 ~~~~~~~~e~~~~~~~~~~lGlp~~~------~~~lV~GaT~~~~a~~L~aar~~~--------~~~~~viv~r~aHkSv 157 (450)
T 3bc8_A 92 GSSLLNKITNSLVLNVIKLAGVHSVA------SCFVVPMATGMSLTLCFLTLRHKR--------PKAKYIIWPRIDQKSC 157 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTCC------EEEEESSCHHHHHHHHHHHHHHHC--------TTCCEEEEECCCCHHH
T ss_pred CCcHHHHHHHHHHHHHHHhCCCCCCc------eEEEECCHHHHHHHHHHHHcchhh--------cCCCEEEEECCcHHHH
Confidence 89999999999999999999999874 679999998 77888888887641 0134466667899999
Q ss_pred HHHHHHcCCCCCCEEEEecCC-CCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEE
Q 010125 206 QKAAQIVGIDVKNFRAIKTTK-SSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVH 284 (517)
Q Consensus 206 ~kaa~~~G~g~~~v~~vp~d~-~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lh 284 (517)
.||+.++|+ ..+.|+... ++.++||+++|+++|+++... .+++|+.+.+++.+|++|||++|+++|++||+|+|
T Consensus 158 ~kAl~l~Gl---~p~~v~~~~~~~~~~id~~~le~aI~~~~~~--~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~ 232 (450)
T 3bc8_A 158 FKSMVTAGF---EPVVIENVLEGDELRTDLKAVEAKIQELGPE--HILCLHSTTACFAPRVPDRLEELAVICANYDIPHV 232 (450)
T ss_dssp HHHHHHTTC---EEEEECCEEETTEEECCHHHHHHHHHHHCGG--GEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEE
T ss_pred HHHHHHcCC---eeEEEEeeecCccCCcCHHHHHHHHHhcCCC--CEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEE
Confidence 999999999 666664421 136899999999999886421 46778888777777899999999999999999999
Q ss_pred cccccccccccCccccccccCC--CCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCccccCCccccccccccCC
Q 010125 285 VDAAYAGSACICPEFRHFIDGV--EGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYK 362 (517)
Q Consensus 285 vDaA~g~~~~~~~~~~~~~~g~--~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~ 362 (517)
||+|||+.+.+..+.. ..++ ++||+++.|+|||+++|++++++++|++..+.... ..|....
T Consensus 233 VD~A~G~~~~~~~~l~--~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~---~~~~g~~----------- 296 (450)
T 3bc8_A 233 VNNAYGLQSSKCMHLI--QQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDIS---KMYPGRA----------- 296 (450)
T ss_dssp EECTTTTTCHHHHHHH--HHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHH---HHSCSCB-----------
T ss_pred EECCCchhhhhhHhHH--HHHhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHHH---HHhhcCC-----------
Confidence 9999998765432211 1233 68999999999999999999999999887664332 2232110
Q ss_pred CccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC---CeEEecCCCeeE-EEEEecCCCcchhhh
Q 010125 363 DWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDK---RFEIVFPCHFAV-VCFRVSPSPVLMDKL 438 (517)
Q Consensus 363 ~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~---~~~l~~~~~~~~-v~f~~~~~~~~~~~~ 438 (517)
.+ ..++++|.+++.+|.+++++.+++..++++++++.|++++ +++++..+..++ .++.+.....
T Consensus 297 -----s~--SpsL~l~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~----- 364 (450)
T 3bc8_A 297 -----SA--SPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDG----- 364 (450)
T ss_dssp -----CS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSS-----
T ss_pred -----cc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeecccccc-----
Confidence 00 1248999999999999999999999999999999999888 888775443221 2232221100
Q ss_pred hhhhhccccchHHHHHHHHHHHHHHHHhcC---cEEEee--------ee---------ECCEeEEEEEecCCCCcHHHHH
Q 010125 439 KTKYVNCLLSEEEQINEFNRELLESINASG---KAYMTH--------AV---------LGGIYAIRFATGATLTEKRHVV 498 (517)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g---~~~~~~--------~~---------~~g~~~lR~~~~~~~t~~~di~ 498 (517)
. .. ....+|.-.+...| .-..++ .. .....++=+.+ ++..+++|++
T Consensus 365 --------~-~~----~D~tkl~i~~~~~g~sG~~v~~~~~~~~~~~~~l~~~gi~~E~~~~~~i~~~~-sig~~~~di~ 430 (450)
T 3bc8_A 365 --------H-HD----KAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAA-AIGMKMQDVD 430 (450)
T ss_dssp --------S-SS----CHHHHHHHHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEEC-CTTCCHHHHH
T ss_pred --------c-cc----CCCceeEEEecCCCCccceeeecccccchhHHHHHHcCCeeecCCCCcEEEEe-cCCCCHHHHH
Confidence 0 00 01123333333333 222200 00 11234455554 6778999999
Q ss_pred HHHHHHHHHHHHHHhhc
Q 010125 499 VAWTVVQQHLEAFQSAF 515 (517)
Q Consensus 499 ~l~~~l~~~~~~l~~~~ 515 (517)
+++++|+++.++.+++.
T Consensus 431 ~l~~~L~~~~~~~~~~~ 447 (450)
T 3bc8_A 431 LFIKRLDKCLNIVRKEQ 447 (450)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999987776653
No 13
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.3e-35 Score=304.50 Aligned_cols=381 Identities=17% Similarity=0.195 Sum_probs=290.8
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCCCCCccceeCCCCCChHHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHH
Q 010125 65 SAPNNPESMETILQDVQQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQ 144 (517)
Q Consensus 65 ~~p~~~~~~~~il~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~ 144 (517)
.+|+.|.+.+++++++.+.. +...+|.+|+|+++..+++. | .+.+.+...+..+...+...+...+++.++.+|+++
T Consensus 4 ~lp~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~-~-~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~ 80 (397)
T 3f9t_A 4 NMQEKGVSEKEILEELKKYR-SLDLKYEDGNIFGSMCSNVL-P-ITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGS 80 (397)
T ss_dssp SCCSSCCCHHHHHHHHHHHH-TTSCCGGGTCBCSCSCCCCC-T-HHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHhh-ccCCCCCCCCeEEEecCCCc-H-HHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHH
Confidence 57999999999999999864 66677888999999865443 3 345666666655444445567889999999999999
Q ss_pred HcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHH--hcccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEE
Q 010125 145 MLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNK--IGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAI 222 (517)
Q Consensus 145 l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~--~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~v 222 (517)
++|.+++ .+++|+|||+|+..++.+++.....+ .+....+++.|+++..+|.++.++++.+|+ +++.|
T Consensus 81 ~~~~~~~-------~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~---~~~~v 150 (397)
T 3f9t_A 81 LLNNKDA-------YGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREMMDL---EYIYA 150 (397)
T ss_dssp HTTCTTC-------EEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHHHHTC---EEEEE
T ss_pred HhCCCCC-------CEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHHHcCc---eeEEE
Confidence 9999765 68999999999999999887653211 122222567899999999999999999999 99999
Q ss_pred ecCCCCCcccCHHHHHHHHHH-hHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEcccccccccccCccccc
Q 010125 223 KTTKSSSYGLSPDSLMAQINS-DVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRH 301 (517)
Q Consensus 223 p~d~~~~~~~d~~~Le~~i~~-~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~ 301 (517)
|+++ ++.+|+++|+++|++ ++ .+|+++.++|++|.++|+++|.++|++||+|+|+|++|+++.+.......
T Consensus 151 ~~~~--~~~~d~~~l~~~i~~~~~------~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~ 222 (397)
T 3f9t_A 151 PIKE--DYTIDEKFVKDAVEDYDV------DGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKY 222 (397)
T ss_dssp CBCT--TSSBCHHHHHHHHHHSCC------CEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGG
T ss_pred eeCC--CCcCCHHHHHHHHhhcCC------eEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhccccc
Confidence 9975 579999999999987 43 37888899999999999999999999999999999999887653221100
Q ss_pred -------ccc-CCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCccccCCccccccccccCCCccccCCCC-C
Q 010125 302 -------FID-GVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRR-F 372 (517)
Q Consensus 302 -------~~~-g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~-~ 372 (517)
.+. .. ++|++++++||+++.|.++|+++++++... +.+....+|+.... .....+++. .
T Consensus 223 ~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~----------~~~~~~~~~~~ 290 (397)
T 3f9t_A 223 KKKGVNYKFDFSL-GVDSITIDPHKMGHCPIPSGGILFKDIGYK-RYLDVDAPYLTETR----------QATILGTRVGF 290 (397)
T ss_dssp CCTTCCCCCSGGG-TCSEEECCTTTTTCCCSSCEEEEESSGGGG-GGTCEECTTSSSSE----------ECSSCSSCCSH
T ss_pred ccccccccccccc-cCCeEEEccccccCCCCCceEEEEeCHHHH-HhhccCCccccCCC----------ccccccccccc
Confidence 011 12 789999999999999999999999887543 33333244543321 011223333 2
Q ss_pred CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCeeEEEEEecCCCcchhhhhhhhhccccchHHH
Q 010125 373 RSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQ 452 (517)
Q Consensus 373 ~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (517)
..+.+|++++.++.+++.+++++..++++++.+.|++. +++++.++..++++|....
T Consensus 291 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~---------------------- 347 (397)
T 3f9t_A 291 GGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKEN-NFKPVIEPILNIVAIEDED---------------------- 347 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCCSSSEEEEECTT----------------------
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEcCCCccEEEEEeCC----------------------
Confidence 45688889998888999999999999999999999998 8887777888888887642
Q ss_pred HHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 010125 453 INEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHLE 509 (517)
Q Consensus 453 ~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~ 509 (517)
..++.+.|.++|+.. .+.. ...++|+++. ..++++|+++++++|+++.+
T Consensus 348 ----~~~~~~~l~~~gi~v-~~~~--~~~~~Ri~~~-~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 348 ----YKEVCKKLRDRGIYV-SVCN--CVKALRIVVM-PHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp ----HHHHHHHHHHTTCBC-EECS--SSSEEEEECC-TTCCHHHHHHHHHHHHHHC-
T ss_pred ----HHHHHHHHHhCCeEE-eccC--CCCEEEEEEc-CCCCHHHHHHHHHHHHHhhC
Confidence 245677777788653 3222 2368999985 67788899999999988653
No 14
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=100.00 E-value=2.1e-36 Score=317.71 Aligned_cols=395 Identities=13% Similarity=0.111 Sum_probs=279.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHhhhCCCCCCCCCCCHHHHHHHHHHhhcCCCCCCCCCccceeC
Q 010125 21 LDSEEFRRQGHMIIDFIADYYKNVEKYPVRSQVEPGYLQKVLPESAPNNPESMETILQDVQQHIVPGITHWQSPNYFAYF 100 (517)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~il~~~~~~~~~~~~~~~~p~~~~~~ 100 (517)
+=++.|.+.+++++....++++++-. ...+|++|.+.+++.+.+.+...... ..|+++.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~lp~~g~~~~~i~~~~~~~~~~~~-----~~yld~a 87 (456)
T 2z67_A 29 LIPKNMEKRGELVLNEYLKEIEDVFN----------------HRKIPENGIDDEKIKLFLKFLSMMDT-----DKDPKSV 87 (456)
T ss_dssp SSCHHHHHHHHHHHHHHTHHHHHHHH----------------HCSCCSSCCCHHHHHHHHHHHHTTBG-----GGCTTCE
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhhc----------------cCCCCCCCCCHHHHHHHHHHHHhccc-----ccccccc
Confidence 33688999999988877777765432 12468888998888887776543321 2355555
Q ss_pred CCCCChHHHHHHHHH----hccc----------ccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCc
Q 010125 101 PSSGSIAGFLGEMLS----SGFN----------IVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTT 166 (517)
Q Consensus 101 ~~~~~~~~~~~~~l~----~~~n----------~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~gg 166 (517)
..++.++.++..+.. ..++ .+. .|..+|...++++++++|+++++|+++ .+++|+||
T Consensus 88 a~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~g~~~--------~~~~t~g~ 158 (456)
T 2z67_A 88 RIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQP-KASGASIMYALTNKILESFFKQLGLNV--------HAIATPIS 158 (456)
T ss_dssp ECSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCT-TBHHHHHHHHHHHHHHHHHHHHTTCCC--------EEEEESSC
T ss_pred ccccccccccccccCccccccCCCccHHHHHHhhCc-ccccCcHHHHHHHHHHHHHHHHcCCCC--------CEEEeCcH
Confidence 444444333322221 1111 122 456667889999999999999999874 27999999
Q ss_pred h-HHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCC-CCCcccCHHHHHHHHHHh
Q 010125 167 C-EAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTK-SSSYGLSPDSLMAQINSD 244 (517)
Q Consensus 167 t-~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~-~~~~~~d~~~Le~~i~~~ 244 (517)
| ++|+.++.+++... ++..|++++.+|+|+.++++..|+ +++.||+.+ +++|++|+++|+++|++.
T Consensus 159 te~a~~~al~~~~~~~---------~~~~vi~~~~~h~s~~~~~~~~G~---~~~~v~~~~~~~~~~~d~~~l~~~i~~~ 226 (456)
T 2z67_A 159 TGMSISLCLSAARKKY---------GSNVVIYPYASHKSPIKAVSFVGM---NMRLVETVLDGDRVYVPVEDIENAIKKE 226 (456)
T ss_dssp HHHHHHHHHHHHHHHH---------CCCEEEEECCCCHHHHHHHHHTTC---EEEEECCEEETTEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---------CCCEEEEECCCcHHHHHHHHHcCC---CceEEEEeccCCCCCcCHHHHHHHHHHH
Confidence 9 67777887766531 344566677799999999999999 899888732 236899999999999432
Q ss_pred HhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEcccccccccc-cCccccccccCCCCCCeeeeccccccCCC
Q 010125 245 VEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSAC-ICPEFRHFIDGVEGADSFSLNAHKWFFAT 323 (517)
Q Consensus 245 ~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~-~~~~~~~~~~g~~~aDsi~~~~hK~l~~p 323 (517)
.+++ .+++|+.+.++|++|.++|+++|+++|++||+|+|||+||++... ..+.....+.+ ++|++++++|||+++|
T Consensus 227 ~~~~-~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~--~~D~~~~s~hK~~~~p 303 (456)
T 2z67_A 227 IELG-NRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKY--RVDAVVSSSDKNLLTP 303 (456)
T ss_dssp HHTT-CCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTS--CCSEEEEEHHHHHCCC
T ss_pred hhCC-CeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhCC--CCCEEEEcCCCCcCCC
Confidence 2122 466788899999999999999999999999999999999987765 22322222233 7999999999999999
Q ss_pred CcceEEEEeCchhHHhhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 010125 324 LDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLF 403 (517)
Q Consensus 324 ~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l 403 (517)
.++|+++++++..+.. + .+.|..... ...++++|+++..+|.++++++.++..++++++
T Consensus 304 ~g~G~l~~~~~~~~~~-l--~~~~~g~~~------------------~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l 362 (456)
T 2z67_A 304 IGGGLVYSTDAEFIKE-I--SLSYPGRAS------------------ATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLL 362 (456)
T ss_dssp SSCEEEEESCHHHHHH-H--HTTSCSCBC------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCHHHHhh-c--CcCCCCCCC------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987655432 2 223332100 012678999999999999999999999999999
Q ss_pred HHHHhcCC---CeEEecCCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcE--EEe-----
Q 010125 404 ERLVSGDK---RFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKA--YMT----- 473 (517)
Q Consensus 404 ~~~l~~~~---~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~--~~~----- 473 (517)
.+.|++++ ++.++ +|+ ++++|++.... . ..++.++|.++|.. -+.
T Consensus 363 ~~~L~~~~~~~g~~v~-~~~-~~v~~~~~~~~----------------------~-~~~l~~~L~~~gi~~~rv~~~~g~ 417 (456)
T 2z67_A 363 DELLNDLSKKTGGKFL-DVE-SPIASCISVNS----------------------D-PVEIAAKLYNLRVTGPRGIKKTDH 417 (456)
T ss_dssp HHHHHHHHHHSSCCBC-CCC-CSSEEEEECSS----------------------C-HHHHHHHHHHTTEESCEEECTTCH
T ss_pred HHHHHhcccccCCEec-CCC-CeEEEEEeccc----------------------H-HHHHHHHHHHcCCCcceEEeecCc
Confidence 99999886 76655 445 88888874221 0 23455666666641 111
Q ss_pred --ee--eECCEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 010125 474 --HA--VLGGIYAIRFATGATLTEKRHVVVAWTVVQQH 507 (517)
Q Consensus 474 --~~--~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~ 507 (517)
+. ......++|+++ ...++++||++++++|+++
T Consensus 418 f~G~~~~~~~~~~vr~s~-~~~~t~eeid~~l~~L~~~ 454 (456)
T 2z67_A 418 FGNCYLGTYTHDYIVMNA-AIGVRTEDIVNSVSKLEKI 454 (456)
T ss_dssp HHHTCSSCCSCCEEEEEC-CTTCCHHHHHHHHHHHHTC
T ss_pred cccccccccCcchhhhhh-hcCCCHHHHHHHHHHHHHH
Confidence 00 011235899998 5678899999999999764
No 15
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.98 E-value=1.3e-30 Score=274.79 Aligned_cols=395 Identities=13% Similarity=0.079 Sum_probs=265.8
Q ss_pred hhhHhhhCCCCCCCCCCCHHHHHHHHHHhhcCCCCCCCCCccceeCCCCCChHHHHHHHHHhcccccccccc-cChhhHH
Q 010125 55 PGYLQKVLPESAPNNPESMETILQDVQQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWI-SSPAATE 133 (517)
Q Consensus 55 ~~~l~~~~~~~~p~~~~~~~~il~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~-~sp~~~~ 133 (517)
|+.++...+..+| +.+..++++++.+....+...+.+..|+| -......|.++.++.....+.+..... .+++..+
T Consensus 31 p~~~~~~~~~~lp--~~~e~~~~~~~~~l~~~~~~~~~~~~~lg-~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~g~~~ 107 (474)
T 1wyu_B 31 PKEHLREVPPRLP--EVDELTLVRHYTGLSRRQVGVDTTFYPLG-SCTMKYNPKLHEEAARLFADLHPYQDPRTAQGALR 107 (474)
T ss_dssp CGGGBCSSCCCCC--CCCHHHHHHHHHHHHTTCCCTTTSCCCBT-TTCCCCCCHHHHHHHHTTSSCCTTSCGGGCHHHHH
T ss_pred CHHHhccCCCCCC--CCCHHHHHHHHHHHHhCCCCcccCccccc-cccccCCHHHHHHHHHHHHhcCCCCchhhChHHHH
Confidence 5566555455788 78999999999987766654445566777 333344456555555442222222222 4788999
Q ss_pred HHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHHcC
Q 010125 134 LENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQIVG 213 (517)
Q Consensus 134 lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~~G 213 (517)
++.++.+|+++++|++. ..++++|||+|+..|+.+++....++ |+. .++..|++++.+|.++.++++..|
T Consensus 108 l~~~l~~~la~~~g~~~--------~~~~~~ggt~a~~~al~~~~~~~~~~-Gd~-~~r~~Vlv~~~~h~~~~~~~~~~G 177 (474)
T 1wyu_B 108 LMWELGEYLKALTGMDA--------ITLEPAAGAHGELTGILIIRAYHEDR-GEG-RTRRVVLVPDSAHGSNPATASMAG 177 (474)
T ss_dssp HHHHHHHHHHHHHTCSE--------EECCCSSHHHHHHHHHHHHHHHHHHT-TCT-TTCCEEEEETTSCTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCc--------eeecChHHHHHHHHHHHHHHHHHHhc-CCc-cCCCEEEEeCCcChhhHHHHHHCC
Confidence 99999999999999874 35788999999999998887543221 210 134478888999999999999999
Q ss_pred CCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc-cChhHHHHHHHHhCCeEEcccccccc
Q 010125 214 IDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV-DPLKPLCDVAKQFGIWVHVDAAYAGS 292 (517)
Q Consensus 214 ~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i-dpl~eI~~i~~~~gi~lhvDaA~g~~ 292 (517)
+ +++.||+++ +|.+|+++|+++|++++ .+|+++.++ ++|.+ +|+++|+++|++||+|+|+|++|+.+
T Consensus 178 ~---~vv~v~~~~--~~~~d~~~L~~~i~~~t------~~v~~~~pn-~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~ 245 (474)
T 1wyu_B 178 Y---QVREIPSGP--EGEVDLEALKRELGPHV------AALMLTNPN-TLGLFERRILEISRLCKEAGVQLYYDGANLNA 245 (474)
T ss_dssp C---EEEEECBCT--TSSBCHHHHHHHCSTTE------EEEEECSSC-TTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGG
T ss_pred C---EEEEecCCC--CCCcCHHHHHHhhCCCc------eEEEEECCC-CCcccCCCHHHHHHHHHHcCCEEEEeCchhhh
Confidence 9 999999974 57999999999997654 367777775 69999 89999999999999999999999765
Q ss_pred cccCccccccccCCCCCCeeeeccccccCCCC-----cceEEEEeCchhHHhhhcCCccccCCcccc----ccccccCCC
Q 010125 293 ACICPEFRHFIDGVEGADSFSLNAHKWFFATL-----DCCCLWVKDPRALVSSLSTNPEYLKNKATE----SMQVVDYKD 363 (517)
Q Consensus 293 ~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~-----~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~----~~~~~~~~~ 363 (517)
.+.. ... +-.++|++++++||+++.|. ++|+++++++. . +.+.. .++...... .........
T Consensus 246 ~~g~--~~~---~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l-~-~~l~~--~~~~~~g~~~~~~~~~~~~~~~ 316 (474)
T 1wyu_B 246 IMGW--ARP---GDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHL-A-PYLPV--PLVERGEEGFYLDFDRPKSIGR 316 (474)
T ss_dssp TTTT--CCH---HHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGG-G-GGCCS--CEEEECSSCEEEECCCTTCCCC
T ss_pred hccC--CCc---ccCCCcEEEEeCccccccCCCCCCCCeEEEEEcHHH-H-HhCCC--CeeeccCCeeEecccCcccCcc
Confidence 5311 110 11168999999999999986 69999997652 2 22221 111000000 000000000
Q ss_pred ccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-CeeEEEEEecCCCcchhhhhhhh
Q 010125 364 WQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPC-HFAVVCFRVSPSPVLMDKLKTKY 442 (517)
Q Consensus 364 ~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~-~~~~v~f~~~~~~~~~~~~~~~~ 442 (517)
+...+.......+.|..++.+|.++++++.++..++++++.+.|++. ++++..++ .+..+.+.+ +..
T Consensus 317 ~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~-~~~---------- 384 (474)
T 1wyu_B 317 VRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK-GYRVPYDGPSMHEFVAQP-PEG---------- 384 (474)
T ss_dssp SSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCSSCSSCCSCEEEBC-STT----------
T ss_pred cccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcEecCCCCcceEEEEEc-CCC----------
Confidence 00001111223466777777788999999999999999999999987 88774332 232233333 211
Q ss_pred hccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 010125 443 VNCLLSEEEQINEFNRELLESINASGKAYMTHAVLG--GIYAIRFATGATLTEKRHVVVAWTVVQQHLE 509 (517)
Q Consensus 443 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~ 509 (517)
....++.++|.++|+.. ....+. ...++|++++ ..++++++++++++|+++.+
T Consensus 385 ------------~~~~~l~~~L~~~Gi~~-~~~~~~~~~~~~lRis~~-~~~t~e~id~~~~~L~~~~~ 439 (474)
T 1wyu_B 385 ------------FRALDLAKGLLELGFHP-PTVYFPLIVKEALMVEPT-ETEAKETLEAFAEAMGALLK 439 (474)
T ss_dssp ------------CCHHHHHHHHHHTTCCC-CEESCSTTSTTCEEECCC-TTSCHHHHHHHHHHHHHHHT
T ss_pred ------------CCHHHHHHHHHHCCccc-cccccccccCCEEEEEee-cCCCHHHHHHHHHHHHHHHH
Confidence 11345677777778753 222221 2468999985 46678899999999988764
No 16
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.97 E-value=6.1e-29 Score=256.58 Aligned_cols=358 Identities=14% Similarity=0.066 Sum_probs=249.7
Q ss_pred CCCCccceeCCCCCChHHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHH
Q 010125 91 WQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAI 170 (517)
Q Consensus 91 ~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~ 170 (517)
..+|.++-+.+++...+..+.+.+...+. .. .++....+..++++++++++|.+... ..++++|||+|+
T Consensus 9 ~~~~~~~~~~pgp~~~~~~v~~a~~~~~~---~~--~~~~~~~~~~~~~~~la~~~~~~~~~------~v~~~~sgt~al 77 (411)
T 3nnk_A 9 LNPPSRLLMGPGPINADPRVLRAMSSQLI---GQ--YDPAMTHYMNEVMALYRGVFRTENRW------TMLVDGTSRAGI 77 (411)
T ss_dssp CCCCCCEEESSSCCCCCHHHHHHHTSCCC---CT--TCHHHHHHHHHHHHHHHHHHTCCCSE------EEEEESCHHHHH
T ss_pred cCCccceeecCCCCCCCHHHHHHhhcccc---cc--ccHHHHHHHHHHHHHHHHHhCCCCCc------EEEECCCcHHHH
Confidence 35777888888877766666666655431 11 24666778889999999999998652 478889999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchH--HHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcC
Q 010125 171 LCTLTAARDRVLNKIGRENISKLIVYGSDQTHCA--LQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVG 248 (517)
Q Consensus 171 ~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s--~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g 248 (517)
..++.++.+ +++.|++++.+|++ +..+++..|+ +++.+|++. ++.+|+++|+++|++.
T Consensus 78 ~~~~~~~~~-----------~gd~Vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~i~~~---- 137 (411)
T 3nnk_A 78 EAILVSAIR-----------PGDKVLVPVFGRFGHLLCEIARRCRA---EVHTIEVPW--GEVFTPDQVEDAVKRI---- 137 (411)
T ss_dssp HHHHHHHCC-----------TTCEEEEEECSHHHHHHHHHHHHTTC---EEEEEECCT--TCCCCHHHHHHHHHHH----
T ss_pred HHHHHHhcC-----------CCCEEEEecCCchHHHHHHHHHHcCC---eEEEEecCC--CCCCCHHHHHHHHhhC----
Confidence 888876632 56678888899988 8889999999 999999964 5789999999999863
Q ss_pred CcceEEEeeccCCccccccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceE
Q 010125 249 LIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCC 328 (517)
Q Consensus 249 ~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~ 328 (517)
.+.+|+++.++|++|.+.|+++|+++|++||+|+|+|++++.+....+. .. .++|++++++|||+++|.++|+
T Consensus 138 -~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~-~~-----~~~d~~~~s~~K~l~~~~g~g~ 210 (411)
T 3nnk_A 138 -RPRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATASLGGNPLET-DV-----WGLDAVSAGMQKCLGGPSGTSP 210 (411)
T ss_dssp -CCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTBTTBCCCT-TT-----TTCSEEECCSTTTTCCCSSEEE
T ss_pred -CCeEEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEECCcccCCcccch-hc-----cCCcEEEecCccccCCCCceEE
Confidence 1348888999999999999999999999999999999998765543221 11 1689999999999989999999
Q ss_pred EEEeCchhHHhhhcC----CccccCCcccc---ccccccCCC----------cccc-CCCC-CCchHHHHHHHHhcHHHH
Q 010125 329 LWVKDPRALVSSLST----NPEYLKNKATE---SMQVVDYKD----------WQIT-LSRR-FRSLKLWFVIRNYGVANL 389 (517)
Q Consensus 329 l~~~~~~~~~~~~~~----~~~yl~~~~~~---~~~~~~~~~----------~~~~-~sr~-~~al~~~~~l~~~g~~g~ 389 (517)
++++++.. +.+.. .+.|....... ......+.+ .... .+.. .....++.+++.+..+|+
T Consensus 211 ~~~~~~~~--~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~ 288 (411)
T 3nnk_A 211 ITLSARME--EAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGL 288 (411)
T ss_dssp EEECHHHH--HHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCH
T ss_pred EEECHHHH--HHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhH
Confidence 99875432 22211 11222111000 000000000 0000 1111 122345566666666778
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEecCCC---eeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHh
Q 010125 390 RHFLRSHVNMAKLFERLVSGDKRFEIVFPCH---FAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINA 466 (517)
Q Consensus 390 ~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 466 (517)
+++.++..++++++.+.|++. +++++.++. .++++|.+.... ...++.+.|.+
T Consensus 289 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~l~~~l~~ 344 (411)
T 3nnk_A 289 DYGIARHKLHGDALVKGIQAM-GLETFGDLKHKMNNVLGVVIPQGI-----------------------NGDQARKLMLE 344 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCCBCSCGGGBCSSEEEEECCTTC-----------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCEeCCCcccccccEEEEECCCCC-----------------------CHHHHHHHHHH
Confidence 999999999999999999987 787764432 466777764210 12456666666
Q ss_pred c-CcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 010125 467 S-GKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHLEAFQ 512 (517)
Q Consensus 467 ~-g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l~ 512 (517)
+ |+...++....+..++|++++++.++++|++++++.|+++.+++.
T Consensus 345 ~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~ 391 (411)
T 3nnk_A 345 DFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNYLK 391 (411)
T ss_dssp HHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred hcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHcC
Confidence 5 765543322223458999986667789999999999999887654
No 17
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.97 E-value=4.2e-28 Score=253.19 Aligned_cols=374 Identities=13% Similarity=0.100 Sum_probs=243.1
Q ss_pred ChhhHhhhCCCCCCCCCCCHHHHHHHHHHhhcCCCCCCCCCccceeCCCC---CChHHHHHHHH--Hhccccc-cccccc
Q 010125 54 EPGYLQKVLPESAPNNPESMETILQDVQQHIVPGITHWQSPNYFAYFPSS---GSIAGFLGEML--SSGFNIV-GFNWIS 127 (517)
Q Consensus 54 ~~~~l~~~~~~~~p~~~~~~~~il~~~~~~~~~~~~~~~~p~~~~~~~~~---~~~~~~~~~~l--~~~~n~~-~~~~~~ 127 (517)
-|++++.. +..+| +|.+..++++++.....++.. +|..|...+ ...|..+.+++ ...+... ....+.
T Consensus 30 ~p~~~~~~-~~~lp-~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~g~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~ 102 (438)
T 1wyu_A 30 LPKEILSP-PIDLP-EPLPEWKVLEELRRLAAQNLP-----AHKAFLGGGVRSHHVPPVVQALAARGEFLTAYTPYQPEV 102 (438)
T ss_dssp SCGGGSSC-CCCCC-CCCCHHHHHHHHHHHHHTSCC-----CTTCCCCSSCCCCCCCHHHHHHHTSHHHHHCCSCCSGGG
T ss_pred CcHHHhcC-CCCCC-CCCCHHHHHHHHHHHHhcCcC-----ccccccCCCccCCcCcHHHHHHHhcchhhhcCCCCcchh
Confidence 47778766 77899 789999999999876544422 233333222 22344544444 2222211 111135
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHH
Q 010125 128 SPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQK 207 (517)
Q Consensus 128 sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~k 207 (517)
+++..+++.++.+++++++|++.. ++++++|+|.++..++.+.+-. +++.|++++.+|.++..
T Consensus 103 ~~g~~~~~~~~~~~la~~~g~~~~-------~i~~~~g~taa~ea~~~a~~~~----------~gd~Viv~~~~h~s~~~ 165 (438)
T 1wyu_A 103 SQGVLQATFEYQTMIAELAGLEIA-------NASMYDGATALAEGVLLALRET----------GRMGVLVSQGVHPEYRA 165 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSSEE-------CSCBSSHHHHHHHHHHHHHHHH----------TCCEEEEETTSCHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhCCCcc-------ceEEeCcHHHHHHHHHHHHhcC----------CCCEEEEcCccCHhHHH
Confidence 778889999999999999999754 5789999995443333333221 56678899999999876
Q ss_pred HH----HHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeE
Q 010125 208 AA----QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWV 283 (517)
Q Consensus 208 aa----~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~l 283 (517)
++ +..|+ +++.||++ ++.+|+++ |+++ +.+|+++++ |++|.++|+++|+++|++||+|+
T Consensus 166 ~~~~~a~~~G~---~v~~v~~~---~~~~d~~~----i~~~------t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~v 228 (438)
T 1wyu_A 166 VLRAYLEAVGA---KLLTLPLE---GGRTPLPE----VGEE------VGAVVVQNP-NFLGALEDLGPFAEAAHGAGALF 228 (438)
T ss_dssp HHHHHHHHTTC---EEEEECCB---TTBCCCCC----CCTT------EEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHCCC---EEEEEcCc---CCccCHHH----hCCC------eEEEEEECC-CCCeEEecHHHHHHHHHHcCCEE
Confidence 55 45898 99999973 46888766 4332 457888888 99999999999999999999999
Q ss_pred Ecccc-cccccccCccccccccCCCCCCeeeecccc-----ccCCCCcceEEEEeCchhHHhhhcCCccccCCccccccc
Q 010125 284 HVDAA-YAGSACICPEFRHFIDGVEGADSFSLNAHK-----WFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQ 357 (517)
Q Consensus 284 hvDaA-~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK-----~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~ 357 (517)
|||+. ++.+.+..+ .. .++|+++++.|| |+++| ++|++++++.. . +.+ +.++.+...+..+
T Consensus 229 ivd~d~~a~g~~~~~--~~-----~g~D~~~~s~kk~~~~~~~~Gp-~~G~l~~~~~~-~-~~l---~~~~~g~~~~~~~ 295 (438)
T 1wyu_A 229 VAVADPLSLGVLKPP--GA-----YGADIAVGDGQSLGLPMGFGGP-HFGFLATKKAF-V-RQL---PGRLVSETVDVEG 295 (438)
T ss_dssp EEECCTTGGGTBCCH--HH-----HTCSEEEEECTTTTCCCGGGCS-CCEEEEECGGG-G-GGC---CSCCEEEEEBTTS
T ss_pred EEEechhhccCcCCC--cc-----CCCCEEEECCcccCCCccCCCC-CeeEEEEcHHH-H-HhC---CCceeccccccCC
Confidence 96643 322222222 11 268999999888 77788 89999987642 2 222 2222111000000
Q ss_pred cccCC------Cc--cc-cCCCCC---Cc-hHHHHH--HHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC-CCe
Q 010125 358 VVDYK------DW--QI-TLSRRF---RS-LKLWFV--IRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFP-CHF 421 (517)
Q Consensus 358 ~~~~~------~~--~~-~~sr~~---~a-l~~~~~--l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~-~~~ 421 (517)
...+. .. .. ..+... .+ .+++++ +..++.+|++++.++..++++++.+.|+++|+++++.+ +.+
T Consensus 296 ~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~ 375 (438)
T 1wyu_A 296 RRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFF 375 (438)
T ss_dssp CEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBC
T ss_pred CcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCCCeE
Confidence 00000 00 00 011111 11 233333 77788899999999999999999999999999998765 445
Q ss_pred eEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEE-EeeeeECCEeEEEEEecCCCCcHHHHHHH
Q 010125 422 AVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAY-MTHAVLGGIYAIRFATGATLTEKRHVVVA 500 (517)
Q Consensus 422 ~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~-~~~~~~~g~~~lR~~~~~~~t~~~di~~l 500 (517)
.+++|+.... ..++.++|.++|+.. +.+..+.+..++|++++ +.++++|++++
T Consensus 376 ~~~~~~~~~~-------------------------~~~~~~~L~~~gi~v~~~~~~~~~~~~lRis~~-~~~t~edi~~~ 429 (438)
T 1wyu_A 376 NEFALALPKD-------------------------PEAVRRALAERGFHGATPVPREYGENLALFAAT-ELHEEEDLLAL 429 (438)
T ss_dssp SEEEEECSSC-------------------------HHHHHHHHHHTTCCCCEECCTTSCSSEEEEECC-TTCCHHHHHHH
T ss_pred EEEEEeCCCC-------------------------HHHHHHHHHHCCceeccccccccCCCeEEEEec-ccCCHHHHHHH
Confidence 5566664211 245677777778654 12223233568999995 67888999999
Q ss_pred HHHHHHH
Q 010125 501 WTVVQQH 507 (517)
Q Consensus 501 ~~~l~~~ 507 (517)
+++|+++
T Consensus 430 ~~~l~~~ 436 (438)
T 1wyu_A 430 REALKEV 436 (438)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
No 18
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.97 E-value=9.6e-29 Score=255.50 Aligned_cols=358 Identities=13% Similarity=0.086 Sum_probs=243.4
Q ss_pred CCCCccceeCCCCCChHHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHH
Q 010125 91 WQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAI 170 (517)
Q Consensus 91 ~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~ 170 (517)
..+|.++.+.+++...+..+.+.+.... . ...++....+..++++++++++|.+++. ..++++|||+|+
T Consensus 7 ~~~~~~~~~~p~p~~~~~~v~~a~~~~~---~--~~~~~~~~~~~~~l~~~la~~~g~~~~~------~~~~~~s~t~al 75 (416)
T 3isl_A 7 LCTPLRTIMTPGPVEVDPRVLRVMSTPV---V--GQFDPAFTGIMNETMEMLRELFQTKNRW------AYPIDGTSRAGI 75 (416)
T ss_dssp CCCCCCEECSSSSCCCCHHHHHHTTSCC---C--CTTSHHHHHHHHHHHHHHHHHTTCCCSE------EEEEESCHHHHH
T ss_pred cCcccceeecCCCcCcCHHHHHHhcccC---C--CCccHHHHHHHHHHHHHHHHHhCCCCCc------EEEecCcHHHHH
Confidence 4466777777776666666655554421 1 1223556788889999999999987652 234889999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchH--HHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcC
Q 010125 171 LCTLTAARDRVLNKIGRENISKLIVYGSDQTHCA--LQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVG 248 (517)
Q Consensus 171 ~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s--~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g 248 (517)
..++.+... +++.|++++.+|++ +.++++..|+ +++.+|++. ++.+|+++|+++|++..
T Consensus 76 ~~~~~~l~~-----------~gd~Vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~i~~~~--- 136 (416)
T 3isl_A 76 EAVLASVIE-----------PEDDVLIPIYGRFGYLLTEIAERYGA---NVHMLECEW--GTVFDPEDIIREIKKVK--- 136 (416)
T ss_dssp HHHHHHHCC-----------TTCEEEEEESSHHHHHHHHHHHHTTC---EEEEEECCT--TCCCCHHHHHHHHHHHC---
T ss_pred HHHHHHhcC-----------CCCEEEEecCCcccHHHHHHHHhcCC---eeEEEecCC--CCCCCHHHHHHHHhhCC---
Confidence 887766521 56678888899998 7788999999 999999975 46899999999998421
Q ss_pred CcceEEEeeccCCccccccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceE
Q 010125 249 LIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCC 328 (517)
Q Consensus 249 ~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~ 328 (517)
+.+|+++.++|++|.+.|+++|+++|++||+++|+|++|+.+....+. .. .++|++++++|||+++|.++|+
T Consensus 137 --~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~-~~-----~~~d~~~~s~~K~l~g~~g~g~ 208 (416)
T 3isl_A 137 --PKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGGCEVKV-DE-----WKIDAAIGGTQKCLSVPSGMAP 208 (416)
T ss_dssp --CSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTTTTTSCCCT-TT-----TTCSEEECCSSSTTCCCSSEEE
T ss_pred --CcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCccccCCCcch-hh-----cCCCEEEecCccccCCCCCeEE
Confidence 248999999999999999999999999999999999999765543321 11 1689999999999999999999
Q ss_pred EEEeCchhHHhhhcCC----ccc--------cCCcccccccccc---C----CCccccC-CCC-CCchHHHHHHHHhcHH
Q 010125 329 LWVKDPRALVSSLSTN----PEY--------LKNKATESMQVVD---Y----KDWQITL-SRR-FRSLKLWFVIRNYGVA 387 (517)
Q Consensus 329 l~~~~~~~~~~~~~~~----~~y--------l~~~~~~~~~~~~---~----~~~~~~~-sr~-~~al~~~~~l~~~g~~ 387 (517)
+++++.. . +.+... .+| ............+ + ....+.. +.. .....++.+++.+...
T Consensus 209 ~~~~~~~-~-~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~ 286 (416)
T 3isl_A 209 ITYNERV-A-DVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEE 286 (416)
T ss_dssp EEECHHH-H-HHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred EEECHHH-H-HHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 9986542 2 222110 000 0000000000000 0 0001111 111 1223555666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCC---eeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHH
Q 010125 388 NLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCH---FAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESI 464 (517)
Q Consensus 388 g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 464 (517)
+++++.++..++++++.+.|++. ++++..++. ..+++|++.... ...++.+.|
T Consensus 287 g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~l~~~L 342 (416)
T 3isl_A 287 GLETRFERHRHHEAALAAGIKAM-GLRLFGDDSCKMPVVTCVEIPGGI-----------------------DGESVRDML 342 (416)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHT-TCCBCSCGGGBCTTEEEEECCTTC-----------------------CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHc-CCEeccCccccCCcEEEEeCCCCC-----------------------CHHHHHHHH
Confidence 78999999999999999999985 888765432 457778774220 124567777
Q ss_pred Hhc-CcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 010125 465 NAS-GKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHLEAFQ 512 (517)
Q Consensus 465 ~~~-g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l~ 512 (517)
.++ |+....+....+..++|+++..+.++++++++++++|+++.+++.
T Consensus 343 ~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~~ 391 (416)
T 3isl_A 343 LAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRHN 391 (416)
T ss_dssp HHHHCEECBCCCSTTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred HHhCCEEEecCCCCCCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHcC
Confidence 666 765433322233568999996666677669999999999887653
No 19
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.97 E-value=3.2e-28 Score=248.01 Aligned_cols=342 Identities=13% Similarity=0.089 Sum_probs=238.2
Q ss_pred cceeCCCCCChHHHHHHHHHhcc----cccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHH
Q 010125 96 YFAYFPSSGSIAGFLGEMLSSGF----NIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAIL 171 (517)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~----n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~ 171 (517)
|+++..+++.++.++. .+...+ ......|..+.....+.+++.+++++++|.+++ .+++|+|||+|+.
T Consensus 3 yld~~~~~~~~~~v~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-------~i~~~~g~~~a~~ 74 (382)
T 4hvk_A 3 YFDYTSAKPVDERILE-AMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGG-------TVVFTSGATEANN 74 (382)
T ss_dssp BCBTTTCCCCCHHHHH-HHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTE-------EEEEESSHHHHHH
T ss_pred eecCCCcCCCCHHHHH-HHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcC-------eEEEECCchHHHH
Confidence 6676666665555443 333322 212223444556778888999999999999764 6899999999999
Q ss_pred HHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHHc---CCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcC
Q 010125 172 CTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQIV---GIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVG 248 (517)
Q Consensus 172 ~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~~---G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g 248 (517)
.++.+......+ +++.|+++..+|+++..++..+ |+ +++.+|+++ ++.+|+++|++++++++
T Consensus 75 ~~~~~~~~~~~~-------~gd~vi~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~i~~~~--- 139 (382)
T 4hvk_A 75 LAIIGYAMRNAR-------KGKHILVSAVEHMSVINPAKFLQKQGF---EVEYIPVGK--YGEVDVSFIDQKLRDDT--- 139 (382)
T ss_dssp HHHHHHHHHHGG-------GCCEEEEETTCCHHHHHHHHHHHHTTC---EEEEECBCT--TSCBCHHHHHHHCCTTE---
T ss_pred HHHHHhhhhhcC-------CCCEEEECCCCcHHHHHHHHHHHhcCC---EEEEeccCC--CCCcCHHHHHHHhccCc---
Confidence 888876532101 5667889999999998877664 88 999999975 56999999999997644
Q ss_pred CcceEEEeeccCCccccccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceE
Q 010125 249 LIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCC 328 (517)
Q Consensus 249 ~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~ 328 (517)
.+|+++.++|++|.+.|+++|.++|++||+ +|+|++|+.+....+. .. .++|++++++||++ +|.|+|+
T Consensus 140 ---~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~~~~~~-~~-----~~~d~~~~s~~K~~-g~~g~g~ 208 (382)
T 4hvk_A 140 ---ILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQIEVDV-EK-----IGADMLTISSNDIY-GPKGVGA 208 (382)
T ss_dssp ---EEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTTBCCCH-HH-----HTCSEEEEESGGGT-SCTTCEE
T ss_pred ---eEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCCCCCCc-hh-----cCCCEEEEeHHHhc-CCCceEE
Confidence 489999999999999999999999999999 9999999766543321 11 15899999999975 5778999
Q ss_pred EEEeCchhHHhhhcCCccccCCccccccccccCCCccccCC-CC-CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 010125 329 LWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLS-RR-FRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERL 406 (517)
Q Consensus 329 l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~s-r~-~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~ 406 (517)
+++++...+ ..++..... . .....+ .. .....+..+++ +..++++++.++..++++++.+.
T Consensus 209 ~~~~~~~~~-------~~~~~~~~~----~-----~~~~~~~~~~~~~~~~~~al~-~~~~~~~~~~~~~~~~~~~l~~~ 271 (382)
T 4hvk_A 209 LWIRKEAKL-------QPVILGGGQ----E-----NGLRSGSENVPSIVGFGKAAE-ITAMEWREEAERLRRLRDRIIDN 271 (382)
T ss_dssp EEEETTCCC-------CCSSCSSCT----G-----GGTSCSCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCccCc-------CcccccCCC----c-----CccccCCcCHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHH
Confidence 999865421 112111100 0 000011 01 11123333444 23568889999999999999999
Q ss_pred HhcCCCeEEecCCC---eeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeEC-----
Q 010125 407 VSGDKRFEIVFPCH---FAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLG----- 478 (517)
Q Consensus 407 l~~~~~~~l~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~----- 478 (517)
|+++|++++..++. .++++|++.... ..++.+.|.++|+....+....
T Consensus 272 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~l~~~gi~v~~g~~~~~~~~~ 327 (382)
T 4hvk_A 272 VLKIEESYLNGHPEKRLPNNVNVRFSYIE------------------------GESIVLSLDMAGIQASTGSACSSKTLQ 327 (382)
T ss_dssp HTTSTTEEECSCSSSBCTTEEEEEETTCC------------------------HHHHHHHHHHTTCBCBCC--------C
T ss_pred HhcCCCeEEeCCccccCCCEEEEEECCCC------------------------HHHHHHHHHHCCEEEeeCCccCCCCCc
Confidence 99999999875432 357788775321 2456677777786543221111
Q ss_pred --------C------EeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHHh
Q 010125 479 --------G------IYAIRFATGATLTEKRHVVVAWTVVQQHLEAFQS 513 (517)
Q Consensus 479 --------g------~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l~~ 513 (517)
| ..++|+++. ..++++|++++++.|+++.+++.+
T Consensus 328 ~~~~~~~~g~~~~~~~~~iRl~~~-~~~t~e~i~~~~~~l~~~~~~~~~ 375 (382)
T 4hvk_A 328 PSHVLMACGLKHEEAHGTLLLTLG-RYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp CCHHHHHTTCCHHHHHTEEEEECC-TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHcCCChhhcCCeEEEEcC-CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 0 468999985 567888999999999999887764
No 20
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.96 E-value=6.4e-28 Score=246.61 Aligned_cols=353 Identities=12% Similarity=0.038 Sum_probs=242.2
Q ss_pred CccceeCCCCCChHHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHH
Q 010125 94 PNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCT 173 (517)
Q Consensus 94 p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~a 173 (517)
..|+++...+..++ .+.+.+...+.. .| ++....+.+++.+++++++|.+.. ..+++|+|||+|+..+
T Consensus 20 ~~~l~~~~~~~~~~-~v~~a~~~~~~~---~~--~~~~~~~~~~~~~~la~~~g~~~~------~~v~~~~g~t~a~~~~ 87 (386)
T 2dr1_A 20 KYKLFTAGPVACFP-EVLEIMKVQMFS---HR--SKEYRKVHMDTVERLREFLEVEKG------EVLLVPSSGTGIMEAS 87 (386)
T ss_dssp CSEECCSSSCCCCH-HHHHHTTSCCCC---TT--SHHHHHHHHHHHHHHHHHHTCSSS------EEEEESSCHHHHHHHH
T ss_pred cceeecCCCcCCcH-HHHHHHhccccc---cc--CHHHHHHHHHHHHHHHHHhCCCCC------cEEEEeCChHHHHHHH
Confidence 35777654444444 455555554432 23 345578889999999999999721 1589999999999988
Q ss_pred HHHHHHHHHHHhcccCCCCeEEEeCCCCchH--HHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcc
Q 010125 174 LTAARDRVLNKIGRENISKLIVYGSDQTHCA--LQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIP 251 (517)
Q Consensus 174 l~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s--~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p 251 (517)
+.+..+ +++.|++++.+|++ +..+++..|+ +++.+|++. ++.+|+++|++++++.. .+
T Consensus 88 ~~~l~~-----------~gd~vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~l~~~~----~~ 147 (386)
T 2dr1_A 88 IRNGVS-----------KGGKVLVTIIGAFGKRYKEVVESNGR---KAVVLEYEP--GKAVKPEDLDDALRKNP----DV 147 (386)
T ss_dssp HHHHSC-----------TTCEEEEEESSHHHHHHHHHHHHTTC---EEEEEECCT--TCCCCHHHHHHHHHHCT----TC
T ss_pred HHHhhc-----------CCCeEEEEcCCchhHHHHHHHHHhCC---ceEEEecCC--CCCCCHHHHHHHHhcCC----CC
Confidence 876532 45678888899998 8888999999 999999975 57899999999996421 24
Q ss_pred eEEEeeccCCccccccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEE
Q 010125 252 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWV 331 (517)
Q Consensus 252 ~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~ 331 (517)
.+|+++.++|++|.+.|+++|+++|++||+++|+|++|+.+....+ +... ++|+++.++||+++.|.++|++++
T Consensus 148 ~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~-----~~~~-~~di~~~s~sK~~~~~~g~G~~~~ 221 (386)
T 2dr1_A 148 EAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGADIK-----FDKW-GLDVVFSSSQKAFGVPPGLAIGAF 221 (386)
T ss_dssp CEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBCCC-----TTTT-TCSEEEEETTSTTCCCSSCEEEEE
T ss_pred cEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccCcccc-----cccc-CCcEEEEeccccccCCCceEEEEE
Confidence 4788889999999999999999999999999999999986654221 1111 579999999999999888999998
Q ss_pred eCchhHHhhhcC--CccccCCccccccccccCC-CccccCCCC-CCchHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHH
Q 010125 332 KDPRALVSSLST--NPEYLKNKATESMQVVDYK-DWQITLSRR-FRSLKLWFVIRNYGVA-NLRHFLRSHVNMAKLFERL 406 (517)
Q Consensus 332 ~~~~~~~~~~~~--~~~yl~~~~~~~~~~~~~~-~~~~~~sr~-~~al~~~~~l~~~g~~-g~~~~i~~~~~~a~~l~~~ 406 (517)
++. .. +.+.. ...+...... ...... ......+.. .....++.+++.+... +++++.++..++++++.+.
T Consensus 222 ~~~-~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~ 296 (386)
T 2dr1_A 222 SER-FL-EIAEKMPERGWYFDIPL---YVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREG 296 (386)
T ss_dssp CHH-HH-HHHTTCTTCCSTTCHHH---HHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHH-HH-HHHhcCCCCceEEeHHH---HHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 754 22 22211 0111110000 000000 000011111 1223455566655555 6888999999999999999
Q ss_pred HhcCCCeEEecCC---CeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEE
Q 010125 407 VSGDKRFEIVFPC---HFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAI 483 (517)
Q Consensus 407 l~~~~~~~l~~~~---~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~l 483 (517)
|++. ++++..+. ..++++|++... ....++.++|.++|+....+....+..++
T Consensus 297 L~~~-g~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~l~~~gi~v~~~~~~~~~~~i 352 (386)
T 2dr1_A 297 VREI-GLDILAEPGHESPTITAVLTPPG-----------------------IKGDEVYEAMRKRGFELAKGYGSVKEKTF 352 (386)
T ss_dssp HHHT-TCCBSSCTTCBCSSEEEEECCTT-----------------------CCHHHHHHHHHHTTEECEECCGGGTTTEE
T ss_pred HHHc-CCeeCcCccccCCceEEEEcCCC-----------------------CCHHHHHHHHHHCCeEEecCccccCCCEE
Confidence 9988 88776432 356777876421 01346777777777654433322234689
Q ss_pred EEEecCCCCcHHHHHHHHHHHHHHHHHHHhh
Q 010125 484 RFATGATLTEKRHVVVAWTVVQQHLEAFQSA 514 (517)
Q Consensus 484 R~~~~~~~t~~~di~~l~~~l~~~~~~l~~~ 514 (517)
|+++. ..++++|+++++++|+++.+++..+
T Consensus 353 Ri~~~-~~~~~~~i~~~~~~l~~~~~~~~~~ 382 (386)
T 2dr1_A 353 RIGHM-GYMKFEDIQEMLDNLREVINELKKQ 382 (386)
T ss_dssp EEECC-SSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECC-CCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 99985 4678889999999999998877544
No 21
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.96 E-value=7.6e-28 Score=246.54 Aligned_cols=355 Identities=9% Similarity=0.028 Sum_probs=240.7
Q ss_pred CCccceeCCCCCChHHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHH
Q 010125 93 SPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILC 172 (517)
Q Consensus 93 ~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~ 172 (517)
.|+++.+.+++...+..+.+.+...... . ..+....+..++++++++++|.+... .+++|+|||+|+..
T Consensus 21 ~~~~~~~~p~p~~~~~~v~~a~~~~~~~---~--~~~~~~~~~~~l~~~la~~~~~~~~~------~v~~~~gg~~al~~ 89 (393)
T 3kgw_A 21 VPTRLLLGPGPSNLAPRVLAAGSLRMIG---H--MQKEMLQIMEEIKQGIQYVFQTRNPL------TLVVSGSGHCAMET 89 (393)
T ss_dssp CCCCEECSSSCCCCCHHHHHHTTCCCCC---T--TSHHHHHHHHHHHHHHHHHHTCCCSE------EEEESCCTTTHHHH
T ss_pred CccceeccCCCCCCCHHHHHHhcccccC---c--ccHHHHHHHHHHHHHHHHHhCCCCCc------EEEEeCCcHHHHHH
Confidence 4677778877766666666666553211 1 23555677888999999999987542 47899999999988
Q ss_pred HHHHHHHHHHHHhcccCCCCeEEEeCCCCchH--HHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCc
Q 010125 173 TLTAARDRVLNKIGRENISKLIVYGSDQTHCA--LQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLI 250 (517)
Q Consensus 173 al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s--~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~ 250 (517)
++.+..+ +++.|+++..+|++ +..+++..|+ +++.+|++. ++.+|+++|+++|++..
T Consensus 90 ~~~~~~~-----------~gd~vl~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~--~~~~d~~~l~~~i~~~~----- 148 (393)
T 3kgw_A 90 ALFNLLE-----------PGDSFLTGTNGIWGMRAAEIADRIGA---RVHQMIKKP--GEHYTLQEVEEGLAQHK----- 148 (393)
T ss_dssp HHHHHCC-----------TTCEEEEEESSHHHHHHHHHHHHTTC---EEEEEECCT--TCCCCHHHHHHHHHHHC-----
T ss_pred HHHhcCC-----------CCCEEEEEeCCchhHHHHHHHHHcCC---ceEEEeCCC--CCCCCHHHHHHHHhhCC-----
Confidence 8776532 55667777788864 4778888999 999999875 45899999999998721
Q ss_pred ceEEEeeccCCccccccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEE
Q 010125 251 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW 330 (517)
Q Consensus 251 p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~ 330 (517)
+.+|+++.++|++|.+.|+++|.++|++||+|+|+|++|+.+....+. . -.++|++++++||++++|.|+|+++
T Consensus 149 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~-~-----~~~~d~~~~s~sK~~~~~~g~g~~~ 222 (393)
T 3kgw_A 149 PVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGVPIYM-D-----QQGIDIMYSSSQKVLNAPPGISLIS 222 (393)
T ss_dssp CSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTTTTSCCCT-T-----TTTCCEEEEESSSTTCCCSSCEEEE
T ss_pred CcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEEECCccccCcccch-h-----hcCCCEEEecCcccccCCCceeEEE
Confidence 237899999999999999999999999999999999999744332211 1 1268999999999998888999999
Q ss_pred EeCchhHHhhhcC-Cc---c-ccCCccc-cccccccCCCccccCCCC-CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 010125 331 VKDPRALVSSLST-NP---E-YLKNKAT-ESMQVVDYKDWQITLSRR-FRSLKLWFVIRNYGVANLRHFLRSHVNMAKLF 403 (517)
Q Consensus 331 ~~~~~~~~~~~~~-~~---~-yl~~~~~-~~~~~~~~~~~~~~~sr~-~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l 403 (517)
++++. . +.+.. .. . |+..... ...+......+. ..+.. .....+..+++.+..++++++.++..++++++
T Consensus 223 ~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l 299 (393)
T 3kgw_A 223 FNDKA-K-YKVYSRKTKPVSFYTDITYLAKLWGCEGETRVI-HHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHL 299 (393)
T ss_dssp ECHHH-H-HHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCC-CCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred ECHHH-H-HHHhccCCCCCceeecHHHHHHhhhhccccCCC-CCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 86542 2 22211 10 1 1100000 000000000000 01111 12234455666666677899999999999999
Q ss_pred HHHHhcCCCeEEecCC---C-eeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhc-CcEEEeeeeEC
Q 010125 404 ERLVSGDKRFEIVFPC---H-FAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINAS-GKAYMTHAVLG 478 (517)
Q Consensus 404 ~~~l~~~~~~~l~~~~---~-~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~ 478 (517)
.+.|++. +++++.+. . ..+++|.+... ....++.++|.++ |+.+..+....
T Consensus 300 ~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~l~~~~gi~v~~g~~~~ 355 (393)
T 3kgw_A 300 HKHLQEM-GLKFFVKDPEIRLPTITTVTVPAG-----------------------YNWRDIVSYVLDHFSIEISGGLGPT 355 (393)
T ss_dssp HHHHHHT-TCCBSSSSGGGBCSSEEEEECCTT-----------------------BCHHHHHHHHHHHHCEECBCCCGGG
T ss_pred HHHHHHc-CCeeccCChhhcCCeEEEEeCCCC-----------------------CCHHHHHHHHHHhCCEEEeCCcccC
Confidence 9999988 78775322 1 24455666422 0124567777776 76544333233
Q ss_pred CEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 010125 479 GIYAIRFATGATLTEKRHVVVAWTVVQQHLEAFQ 512 (517)
Q Consensus 479 g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l~ 512 (517)
+..++|++++...++++|+++++++|+++.+++.
T Consensus 356 ~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~ 389 (393)
T 3kgw_A 356 EERVLRIGLLGYNATTENVDRVAEALREALQHCP 389 (393)
T ss_dssp TTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEEecccCCCHHHHHHHHHHHHHHHHhhh
Confidence 4568999985556688999999999999987764
No 22
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.96 E-value=1.2e-27 Score=245.53 Aligned_cols=352 Identities=14% Similarity=0.061 Sum_probs=236.6
Q ss_pred CCccceeCCCCCChHHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHH
Q 010125 93 SPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILC 172 (517)
Q Consensus 93 ~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~ 172 (517)
.++.+.+.+++...+..+.+.+...+.. .| ++.......++++++++++|.++.. .+++|+|||+|+..
T Consensus 17 ~~~~~~~~~g~~~~~~~v~~a~~~~~~~---~~--~~~~~~~~~~l~~~la~~~g~~~~~------~i~~~~g~t~a~~~ 85 (393)
T 2huf_A 17 TPNKLLMGPGPSNAPQRVLDAMSRPILG---HL--HPETLKIMDDIKEGVRYLFQTNNIA------TFCLSASGHGGMEA 85 (393)
T ss_dssp CCCCEECSSSCCCCCHHHHHHTTSCCCC---TT--SHHHHHHHHHHHHHHHHHHTCCCSE------EEEESSCHHHHHHH
T ss_pred CCCeEEecCCCCCCCHHHHHHHHhhhcc---CC--CHHHHHHHHHHHHHHHHHhCCCCCc------EEEEcCcHHHHHHH
Confidence 3455555555555555666666665533 23 4556677788999999999987531 57899999999998
Q ss_pred HHHHHHHHHHHHhcccCCCCeEEEeCCCCchHH--HHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHH-hHhcCC
Q 010125 173 TLTAARDRVLNKIGRENISKLIVYGSDQTHCAL--QKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINS-DVEVGL 249 (517)
Q Consensus 173 al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~--~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~-~~~~g~ 249 (517)
++.++.. +++.|++++.+|++. .+.++..|+ +++.+|+++ ++.+|+++|+++|++ ++
T Consensus 86 ~~~~~~~-----------~gd~vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~i~~~~~---- 145 (393)
T 2huf_A 86 TLCNLLE-----------DGDVILIGHTGHWGDRSADMATRYGA---DVRVVKSKV--GQSLSLDEIRDALLIHKP---- 145 (393)
T ss_dssp HHHHHCC-----------TTCEEEEEESSHHHHHHHHHHHHTTC---EEEEEECCT--TCCCCHHHHHHHHHHHCC----
T ss_pred HHHHHhC-----------CCCEEEEECCCcchHHHHHHHHHcCC---eeEEEeCCC--CCCCCHHHHHHHHhccCC----
Confidence 8876632 456688888899884 345566788 999999875 468999999999986 33
Q ss_pred cceEEEeeccCCccccccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEE
Q 010125 250 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL 329 (517)
Q Consensus 250 ~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l 329 (517)
.+|+++.++|++|.+.|+++|+++|++||+++|+|++++.+....+ +.. .++|++++++|||+++|.|+|++
T Consensus 146 --~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~-----~~~-~~~d~~~~s~sK~l~g~~G~G~~ 217 (393)
T 2huf_A 146 --SVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGAPMF-----MDR-WEIDAMYTGSQKVLGAPPGITPV 217 (393)
T ss_dssp --SEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCC-----TTT-TTCSEEECCSSSTTCCCSSCEEE
T ss_pred --cEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCcc-----hhh-cCccEEEECCCcccccCCCeEEE
Confidence 3788899999999999999999999999999999999865433221 111 15899999999999888899999
Q ss_pred EEeCchhHHhhhcCC----ccccCCcccccccccc-CCC---cccc-CCCCC-CchHHHHHHHHhcHHHHHHHHHHHHHH
Q 010125 330 WVKDPRALVSSLSTN----PEYLKNKATESMQVVD-YKD---WQIT-LSRRF-RSLKLWFVIRNYGVANLRHFLRSHVNM 399 (517)
Q Consensus 330 ~~~~~~~~~~~~~~~----~~yl~~~~~~~~~~~~-~~~---~~~~-~sr~~-~al~~~~~l~~~g~~g~~~~i~~~~~~ 399 (517)
++++ +.. +.+... .+|..+... ..+ +.. .... ++... ....+..+++.+..+++.++.++..++
T Consensus 218 ~~~~-~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~ 291 (393)
T 2huf_A 218 SFSH-RAV-ERYKRRNTKVKVYYWDMSL----VGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDC 291 (393)
T ss_dssp EECH-HHH-HHHHTCSSCCSCGGGCHHH----HHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred EECH-HHH-HHHhhcCCCCceEEEchHH----HHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 9863 332 233211 222211000 000 000 0000 11111 112333455555445688889999999
Q ss_pred HHHHHHHHhcCCCeEEecCC--Cee-EEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhc-CcEEEeee
Q 010125 400 AKLFERLVSGDKRFEIVFPC--HFA-VVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINAS-GKAYMTHA 475 (517)
Q Consensus 400 a~~l~~~l~~~~~~~l~~~~--~~~-~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~ 475 (517)
++++.+.|+++ +++++.++ ..+ +++|++... . ...++.++|.++ |+....+.
T Consensus 292 ~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~-~----------------------~~~~~~~~L~~~~gi~v~~g~ 347 (393)
T 2huf_A 292 AKRLYRGLQDA-GFELYADPKDRLSTVTTIKVPQG-V----------------------DWLKAAQYAMKTYLVEISGGL 347 (393)
T ss_dssp HHHHHHHHHHT-TCCBSSCGGGBCTTEEEEECCTT-C----------------------CHHHHHHHHHHHHCEECBCCC
T ss_pred HHHHHHHHHHc-CCeeccCccccCCcEEEEEcCCC-C----------------------CHHHHHHHHHHhCCEEEecCc
Confidence 99999999988 88776442 233 677776421 0 024566666654 76443332
Q ss_pred eECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHHh
Q 010125 476 VLGGIYAIRFATGATLTEKRHVVVAWTVVQQHLEAFQS 513 (517)
Q Consensus 476 ~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l~~ 513 (517)
...+..++|++++.+.++++++++++++|+++.+++..
T Consensus 348 ~~~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~~~ 385 (393)
T 2huf_A 348 GPTAGQVFRIGLMGQNATTERVDRVLQVFQEAVAAVKP 385 (393)
T ss_dssp GGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCC
T ss_pred ccccCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHcCC
Confidence 22245689999865667888999999999999887654
No 23
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.96 E-value=1.7e-27 Score=243.17 Aligned_cols=342 Identities=12% Similarity=0.076 Sum_probs=234.4
Q ss_pred cceeCCCCCChHHHHHHHHHhcccc---c-ccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHH
Q 010125 96 YFAYFPSSGSIAGFLGEMLSSGFNI---V-GFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAIL 171 (517)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~n~---~-~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~ 171 (517)
|+++..+++.++.++. .+...+.. + ...|..++.......++.+++++++|.+++ .+++|+|||+|+.
T Consensus 3 yld~~~~~~~~~~v~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-------~v~~~~g~t~a~~ 74 (382)
T 4eb5_A 3 YFDYTSAKPVDERILE-AMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGG-------TVVFTSGATEANN 74 (382)
T ss_dssp BCBTTTCCCCCHHHHH-HHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTE-------EEEEESSHHHHHH
T ss_pred eeccCCCCCCCHHHHH-HHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCC-------eEEEcCchHHHHH
Confidence 6666655555555443 33333221 1 112444556677888899999999998754 6899999999999
Q ss_pred HHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHH---cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcC
Q 010125 172 CTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQI---VGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVG 248 (517)
Q Consensus 172 ~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~---~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g 248 (517)
.++.+.+....+ +++.|++++.+|.++..++.. .|+ +++.+|+++ ++.+|+++|+++|+++
T Consensus 75 ~~~~~l~~~~~~-------~gd~Vl~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~i~~~---- 138 (382)
T 4eb5_A 75 LAIIGYAMRNAR-------KGKHILVSAVEHMSVINPAKFLQKQGF---EVEYIPVGK--YGEVDVSFIDQKLRDD---- 138 (382)
T ss_dssp HHHHHHHHHHGG-------GCCEEEEETTCCHHHHHHHHHHTTTTC---EEEEECBCT--TSCBCHHHHHHHCCTT----
T ss_pred HHHHHHHhhccC-------CCCEEEECCCcchHHHHHHHHHHhCCc---EEEEeccCC--CCccCHHHHHHHhcCC----
Confidence 888877632101 456788999999999888775 477 899999975 5789999999998753
Q ss_pred CcceEEEeeccCCccccccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceE
Q 010125 249 LIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCC 328 (517)
Q Consensus 249 ~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~ 328 (517)
+.+|+++.++|++|.+.|+++|.++|++||+| |+|++|+.+....+ ... . ++|+++.++||++ +|.|+|+
T Consensus 139 --~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~g~~~~~-~~~----~-~~di~~~s~sK~~-g~~g~G~ 208 (382)
T 4eb5_A 139 --TILVSVQHANNEIGTIQPVEEISEVLAGKAAL-HIDATASVGQIEVD-VEK----I-GADMLTISSNDIY-GPKGVGA 208 (382)
T ss_dssp --EEEEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTTBTTBCCC-HHH----H-TCSEEEEETGGGT-CCSSCEE
T ss_pred --CeEEEEeccCCCccccCCHHHHHHHHHHCCCE-EEEcchhcCCcccC-ccc----c-CCCEEEeehHHhc-CCCceEE
Confidence 34788999999999999999999999999999 99999985432221 111 1 5799999999985 5678999
Q ss_pred EEEeCchhHHhhhcCCccccCCccccccccccCCCcccc-CCCC-CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 010125 329 LWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQIT-LSRR-FRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERL 406 (517)
Q Consensus 329 l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~-~sr~-~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~ 406 (517)
+++++...+ . .++..... . .... .+.. .....+..+++.+ .++++++.++..++++++.+.
T Consensus 209 ~~~~~~~~l------~-~~~~~~~~----~-----~~~~~~~~~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~~~l~~~ 271 (382)
T 4eb5_A 209 LWIRKEAKL------Q-PVILGGGQ----E-----NGLRSGSENVPSIVGFGKAAEIT-AMEWREEAERLRRLRDRIIDN 271 (382)
T ss_dssp EEEETTCCC------C-CSSCSSCT----G-----GGTSCSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcccccc------C-ceecCCCc----c-----ccccCCCccHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHH
Confidence 998765211 1 11111000 0 0000 1111 1112334455543 357888999999999999999
Q ss_pred HhcCCCeEEecCCC---eeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeE------
Q 010125 407 VSGDKRFEIVFPCH---FAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVL------ 477 (517)
Q Consensus 407 l~~~~~~~l~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~------ 477 (517)
|+++|++++..++. .++++|++.+.. ..++.+.|.+.|+....+...
T Consensus 272 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~l~~~gi~v~~g~~~~~~~~~ 327 (382)
T 4eb5_A 272 VLKIEESYLNGHPEKRLPNNVNVRFSYIE------------------------GESIVLSLDMAGIQASTGSACSSKTLQ 327 (382)
T ss_dssp HTTSTTEEECSCSSSBCTTEEEEEETTSC------------------------HHHHHHHHHHHTCBCBCCCGGGTSSCC
T ss_pred HhhCCCeEEeCCcccCCCCEEEEEeCCcC------------------------HHHHHHHHHHCCEEEeccccccCCCCc
Confidence 99988998865431 457788775321 234566666678654332210
Q ss_pred -------------CCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHHh
Q 010125 478 -------------GGIYAIRFATGATLTEKRHVVVAWTVVQQHLEAFQS 513 (517)
Q Consensus 478 -------------~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l~~ 513 (517)
.+..++|+++ +..++++|++++++.|+++.+++.+
T Consensus 328 ~~~~~~~~g~~~~~~~~~iRi~~-~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (382)
T 4eb5_A 328 PSHVLMACGLKHEEAHGTLLLTL-GRYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp CCHHHHHTTCCHHHHTTEEEEEC-CTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHcCCChhccCCeEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0235899997 4567888999999999999887664
No 24
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.96 E-value=3.6e-27 Score=238.40 Aligned_cols=324 Identities=11% Similarity=0.080 Sum_probs=219.2
Q ss_pred HHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHH
Q 010125 132 TELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQI 211 (517)
Q Consensus 132 ~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~ 211 (517)
..-|..+.+||+.+ |+|... ..++++|+|.+++..++++.... . .+...|+++..+|.|+.+++.+
T Consensus 116 ~ltn~l~ld~L~~~-G~~~~~------~~flVnGsTgg~lamilaa~r~~-----r--pg~d~VIvpRn~HKSv~kAliL 181 (501)
T 3hl2_A 116 KITNSLVLDIIKLA-GVHTVA------NCFVVPMATGMSLTLCFLTLRHK-----R--PKAKYIIWPRIDQKSCFKSMIT 181 (501)
T ss_dssp HHHHHHHHHHHHHT-TCTTCC------EEEEESSCHHHHHHHHHHHHHHH-----C--TTCCEEEEECCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCCCC------cEEEECcHHHHHHHHHHHHcCcc-----c--CCCCEEEEecchHHHHHHHHHH
Confidence 34567788999998 999763 67999999977766666554431 0 0225678899999999999999
Q ss_pred cCCCCCCEEEEecCC-CCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCc-cccccChhHHHHHHHHhCCeEEccccc
Q 010125 212 VGIDVKNFRAIKTTK-SSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTA-ITAVDPLKPLCDVAKQFGIWVHVDAAY 289 (517)
Q Consensus 212 ~G~g~~~v~~vp~d~-~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~-~G~idpl~eI~~i~~~~gi~lhvDaA~ 289 (517)
+|+ ..++|+... ++.+.+|+++|+++|++... ..++++++..++. .+.+|||++|+++|++||+|+|||+||
T Consensus 182 ~Gl---~Pv~V~p~~d~~~~~id~e~le~aI~e~ga---~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAh 255 (501)
T 3hl2_A 182 AGF---EPVVIENVLEGDELRTDLKAVEAKVQELGP---DCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAY 255 (501)
T ss_dssp TTC---EEEEECEEEETTEEEECHHHHHHHHHHHCG---GGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTT
T ss_pred cCC---eEEEEeeeecccccCCCHHHHHHHHHhcCC---CcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcc
Confidence 999 888887621 12579999999999987621 2234444433333 457799999999999999999999999
Q ss_pred ccccccCcccc-ccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCccccCCccccccccccCCCccccC
Q 010125 290 AGSACICPEFR-HFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITL 368 (517)
Q Consensus 290 g~~~~~~~~~~-~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~ 368 (517)
|+.+.+.++.. ..+. .++||+++.|+||++.+|.+++++++++++.+.... ..|...
T Consensus 256 Gah~~~~~~lp~sA~~-~GrAD~vVqS~HK~llvpIGG~ii~~~d~e~l~~~~---~~yPGr------------------ 313 (501)
T 3hl2_A 256 GVQSSKCMHLIQQGAR-VGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEIS---KMYPGR------------------ 313 (501)
T ss_dssp CTTCHHHHHHHHHHHH-HSCCCEEEEEHHHHHCCCSSCEEEEESCHHHHHHHH---HTSCSC------------------
T ss_pred hhhhhhhhhhHHHHHh-cCCCcEEEecccccceeecCceEEEeCCHHHHHHHH---HhCCCC------------------
Confidence 99875543321 1121 235999999999999999999999999987665431 122210
Q ss_pred CCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC---CeEEecCCCeeEE--EEEecCCCcchhhhhhhhh
Q 010125 369 SRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDK---RFEIVFPCHFAVV--CFRVSPSPVLMDKLKTKYV 443 (517)
Q Consensus 369 sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~---~~~l~~~~~~~~v--~f~~~~~~~~~~~~~~~~~ 443 (517)
...+.++++|+++..+|.+||++++++..+++++|++.|+++. +-+++..+. |-+ ++.+....
T Consensus 314 ~S~Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~~~~-n~is~a~tl~~~~----------- 381 (501)
T 3hl2_A 314 ASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPH-NPISLAMTLKTLD----------- 381 (501)
T ss_dssp BCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCCCTT-CSSEEEEECTTSC-----------
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcCCCC-CceeEEEeccccc-----------
Confidence 0124668899999999999999999999999999999998743 345554332 333 33332210
Q ss_pred ccccchHHHHHHHHHHHHHHHHhcCcEEEeee--------eEC---------CEeEEEEEecCCCCcHHHHHHHHHHHHH
Q 010125 444 NCLLSEEEQINEFNRELLESINASGKAYMTHA--------VLG---------GIYAIRFATGATLTEKRHVVVAWTVVQQ 506 (517)
Q Consensus 444 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~--------~~~---------g~~~lR~~~~~~~t~~~di~~l~~~l~~ 506 (517)
.........+...|..+- -+|-=.++.. .+. ...++-++. ...++++|||.+++.|.+
T Consensus 382 ---~~~~~~~t~~gs~Lf~r~-vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~~~~~yl~~a~-aiG~~~~~v~~~~~~l~~ 456 (501)
T 3hl2_A 382 ---EHRDKAVTQLGSMLFTRQ-VSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAAS-AIGMKMQDVDLFIKRLDR 456 (501)
T ss_dssp ---TTTSCHHHHHHHHHHHTT-CCSCEEECTTCCEEETTEEESSTTTTSSCCSSCEEEEEC-CTTCCHHHHHHHHHHHHH
T ss_pred ---ccccccHHHHHHHHHhcC-CCcceeecCCCceEECCeeecCcccCCCCCCchHHHHHH-HcCCCHHHHHHHHHHHHH
Confidence 000011223333333321 1222122221 111 124666664 567899999999999999
Q ss_pred HHHHHHhh
Q 010125 507 HLEAFQSA 514 (517)
Q Consensus 507 ~~~~l~~~ 514 (517)
+..++.++
T Consensus 457 ~~~~~~~~ 464 (501)
T 3hl2_A 457 CLKAVRKE 464 (501)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHh
Confidence 99887654
No 25
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.96 E-value=1.5e-27 Score=240.54 Aligned_cols=341 Identities=11% Similarity=0.055 Sum_probs=229.7
Q ss_pred eCCCCCChHHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHH
Q 010125 99 YFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAAR 178 (517)
Q Consensus 99 ~~~~~~~~~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar 178 (517)
+.+++...+..+.+.+...+.. ..++.....+.++++++++++|.+... ..+++|+|||+|+..++.+.+
T Consensus 4 ~~~gp~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~l~~~la~~~g~~~~~-----~~v~~t~g~t~a~~~~~~~~~ 73 (353)
T 2yrr_A 4 LTPGPTPIPERVQKALLRPMRG-----HLDPEVLRVNRAIQERLAALFDPGEGA-----LVAALAGSGSLGMEAGLANLD 73 (353)
T ss_dssp CSSSSCCCCHHHHGGGGSCCCC-----TTCHHHHHHHHHHHHHHHHHHCCCTTC-----EEEEESSCHHHHHHHHHHTCS
T ss_pred CCCCCCCCCHHHHHHHhccccc-----ccCHHHHHHHHHHHHHHHHHhCCCCCC-----ceEEEcCCcHHHHHHHHHHhc
Confidence 4455545555566666655543 134666778889999999999986210 268999999999987776542
Q ss_pred HHHHHHhcccCCCCeEEEeCCCCchHH--HHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEe
Q 010125 179 DRVLNKIGRENISKLIVYGSDQTHCAL--QKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCA 256 (517)
Q Consensus 179 ~~~~~~~g~~~~~~~~v~~s~~~H~s~--~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~ 256 (517)
+ +.|++++.+|++. .++++..|+ +++.+|+++ ++.+|+++|++++++. .+.+|++
T Consensus 74 ------------~-d~vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~l~~~-----~~~~v~~ 130 (353)
T 2yrr_A 74 ------------R-GPVLVLVNGAFSQRVAEMAALHGL---DPEVLDFPP--GEPVDPEAVARALKRR-----RYRMVAL 130 (353)
T ss_dssp ------------C-CCEEEEECSHHHHHHHHHHHHTTC---CEEEEECCT--TSCCCHHHHHHHHHHS-----CCSEEEE
T ss_pred ------------C-CcEEEEcCCCchHHHHHHHHHcCC---ceEEEeCCC--CCCCCHHHHHHHHHhC-----CCCEEEE
Confidence 1 3477777889884 567788899 999999975 5689999999999862 1347888
Q ss_pred eccCCccccccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchh
Q 010125 257 TIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRA 336 (517)
Q Consensus 257 t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~ 336 (517)
+.++|++|.+.|+++|.++|++||+|+|+|++|+.+....+ ... . ++|++++++|||+++|.|+|+++++++.
T Consensus 131 ~~~~nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~~~~~-~~~----~-~~d~~~~s~~K~~~~~~g~G~~~~~~~~- 203 (353)
T 2yrr_A 131 VHGETSTGVLNPAEAIGALAKEAGALFFLDAVTTLGMLPFS-MRA----M-GVDYAFTGSQKCLSAPPGLAPIAASLEA- 203 (353)
T ss_dssp ESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCC-HHH----H-TCSEEECCTTSTTCCCSSCEEEEECHHH-
T ss_pred EccCCCcceecCHHHHHHHHHHcCCeEEEEcCccccccccc-ccc----c-CceEEEecCcccccCCCceEEEEECHHH-
Confidence 99999999999999999999999999999999965433221 111 1 5799999999999988899999987542
Q ss_pred HHhhhcCCc-cccCCccccccccccCCCccccCCCC-CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 010125 337 LVSSLSTNP-EYLKNKATESMQVVDYKDWQITLSRR-FRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFE 414 (517)
Q Consensus 337 ~~~~~~~~~-~yl~~~~~~~~~~~~~~~~~~~~sr~-~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~ 414 (517)
. +.+...+ .|+..... ..... ......+.. .....++.+++.+...+++++.++..++++++.+.|++. +++
T Consensus 204 ~-~~l~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 277 (353)
T 2yrr_A 204 R-KAFTGKRGWYLDLARV--AEHWE--RGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR-GFR 277 (353)
T ss_dssp H-HHCCCCSCSTTCHHHH--HHHHT--TCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCE
T ss_pred H-HHhccCCCccccHHHH--hhhhh--cCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCc
Confidence 2 2232111 11110000 00000 000011111 112344566666666678899999999999999999987 888
Q ss_pred EecCC--CeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCC
Q 010125 415 IVFPC--HFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLT 492 (517)
Q Consensus 415 l~~~~--~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t 492 (517)
++.++ ...+++|++... . ...++.++|.++|+....+.......++|+++.. ..
T Consensus 278 ~~~~~~~~~~~~~~~~~~~-~----------------------~~~~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~~-~~ 333 (353)
T 2yrr_A 278 PYPKASPLPTVLVVRPPEG-V----------------------DADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMG-EG 333 (353)
T ss_dssp ESCSSSBCTTEEEEECCTT-C----------------------CHHHHHHHHHHTTEECEECCGGGTTTCEEEECSG-GG
T ss_pred cccCccCCCeEEEEECCCC-C----------------------CHHHHHHHHHHCCEEEeCCccccCCCeEEEecCc-cC
Confidence 87543 344567776321 0 1345677777778654443323334689999854 44
Q ss_pred cHHHHH-HHHHHHHHHHH
Q 010125 493 EKRHVV-VAWTVVQQHLE 509 (517)
Q Consensus 493 ~~~di~-~l~~~l~~~~~ 509 (517)
+++|++ +++++|+++.+
T Consensus 334 ~~~~~~~~~~~~l~~~l~ 351 (353)
T 2yrr_A 334 ARREAYQAFLKALDRALA 351 (353)
T ss_dssp SCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 556888 99999988754
No 26
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.96 E-value=5e-27 Score=240.76 Aligned_cols=351 Identities=12% Similarity=0.054 Sum_probs=237.4
Q ss_pred CCccceeCCCCCChHHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHH
Q 010125 93 SPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILC 172 (517)
Q Consensus 93 ~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~ 172 (517)
++.|+++...++.++ .+.+.+...+.. . .++.......++++++++++|.+++ .+++|+|||+|+..
T Consensus 8 ~~~yl~~~~~~~~~~-~v~~a~~~~~~~---~--~~~~~~~~~~~l~~~la~~~g~~~~-------~v~~t~g~t~a~~~ 74 (392)
T 2z9v_A 8 DPVITLTAGPVNAYP-EVLRGLGRTVLY---D--YDPAFQLLYEKVVDKAQKAMRLSNK-------PVILHGEPVLGLEA 74 (392)
T ss_dssp CCSEECSSSCCCCCH-HHHHHTTSCCCC---T--TSHHHHHHHHHHHHHHHHHTTCSSC-------CEEESSCTHHHHHH
T ss_pred CcceeecCCCcCCCH-HHHHHHhccccc---c--ccHHHHHHHHHHHHHHHHHhCCCCC-------EEEEeCCchHHHHH
Confidence 456777765444444 455555555432 1 2355566777889999999998754 68999999999988
Q ss_pred HHHHHHHHHHHHhcccCCCCeEEEeCCCCchHH--HHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCc
Q 010125 173 TLTAARDRVLNKIGRENISKLIVYGSDQTHCAL--QKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLI 250 (517)
Q Consensus 173 al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~--~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~ 250 (517)
++.++.. +++.|++++.+|++. ...++..|+ +++.+|++. ++.+|+++|++++++.. .
T Consensus 75 ~~~~~~~-----------~gd~Vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~l~~~~----~ 134 (392)
T 2z9v_A 75 AAASLIS-----------PDDVVLNLASGVYGKGFGYWAKRYSP---HLLEIEVPY--NEAIDPQAVADMLKAHP----E 134 (392)
T ss_dssp HHHHHCC-----------TTCCEEEEESSHHHHHHHHHHHHHCS---CEEEEECCT--TSCCCHHHHHHHHHHCT----T
T ss_pred HHHHhcC-----------CCCEEEEecCCcccHHHHHHHHHcCC---ceEEeeCCC--CCCCCHHHHHHHHhcCC----C
Confidence 8876522 455688888999886 344566798 999999975 46899999999996421 2
Q ss_pred ceEEEeeccCCccccccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEE
Q 010125 251 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW 330 (517)
Q Consensus 251 p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~ 330 (517)
+.+|+++.++|++|.+.|+++|.++|++||+|+|+|++|+.+....+ ... . ++|++++++|||+++|.|+|+++
T Consensus 135 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~-~~~----~-~~d~~~~s~sK~~~~~~g~G~l~ 208 (392)
T 2z9v_A 135 ITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMKTH-PED----C-KADIYVTGPNKCLGAPPGLTMMG 208 (392)
T ss_dssp CCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTTBSCC-GGG----G-TCSEEEECSSSTTCCCSCCEEEE
T ss_pred CcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccCCcccc-ccc----c-cceEEEecCcccccCCCceeEEE
Confidence 34788899999999999999999999999999999999976543322 111 1 58999999999999888999999
Q ss_pred EeCchhHHhhhcC-C--c--cccCCccccccccccCCCccc-cCCCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 010125 331 VKDPRALVSSLST-N--P--EYLKNKATESMQVVDYKDWQI-TLSRRF-RSLKLWFVIRNYGVANLRHFLRSHVNMAKLF 403 (517)
Q Consensus 331 ~~~~~~~~~~~~~-~--~--~yl~~~~~~~~~~~~~~~~~~-~~sr~~-~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l 403 (517)
+++.. . +.+.. . + .|+..... .. .+..... .++... ....+..+++.+...|++++.++..++++++
T Consensus 209 ~~~~~-~-~~l~~~~~g~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l 282 (392)
T 2z9v_A 209 VSERA-W-AKMKANPLAPRASMLSIVDW-EN---AWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAM 282 (392)
T ss_dssp ECHHH-H-HHHHTCTTSCCSSTTCSGGG-TT---TTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred ECHHH-H-HHhhhccCCCCceeccHHHH-Hh---hhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 86542 2 22211 1 1 11110000 00 0000000 111111 1124455666655556888999999999999
Q ss_pred HHHHhcCCCeEEecCC----CeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhc-CcEEEeeeeEC
Q 010125 404 ERLVSGDKRFEIVFPC----HFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINAS-GKAYMTHAVLG 478 (517)
Q Consensus 404 ~~~l~~~~~~~l~~~~----~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~ 478 (517)
.+.|+++ ++++..++ ..++++|++... . ...++.++|.++ |+....+....
T Consensus 283 ~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~-~----------------------~~~~l~~~L~~~~gi~v~~g~~~~ 338 (392)
T 2z9v_A 283 RAGVTAM-GLSVWAASDSIASPTTTAVRTPDG-V----------------------DEKALRQAARARYGVVFSSGRGET 338 (392)
T ss_dssp HHHHHHT-TCCBSSSSGGGBCTTEEEEECCTT-C----------------------CHHHHHHHHHHHHCEECEECCGGG
T ss_pred HHHHHHc-CCeeccCCccccCCceEEEECCCC-C----------------------CHHHHHHHHHhcCCEEEecCCCCC
Confidence 9999887 88776523 356677876421 0 024567777776 86554433223
Q ss_pred CEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 010125 479 GIYAIRFATGATLTEKRHVVVAWTVVQQHLEAFQ 512 (517)
Q Consensus 479 g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l~ 512 (517)
+..++|+++..+.++++|++++++.|+++.+++.
T Consensus 339 ~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~~ 372 (392)
T 2z9v_A 339 LGKLTRIGHMGPTAQPIYAIAALTALGGAMNAAG 372 (392)
T ss_dssp TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred CCCeEEEeCcccccCHHHHHHHHHHHHHHHHHcC
Confidence 4568999964446788899999999999887654
No 27
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.96 E-value=9e-28 Score=245.20 Aligned_cols=346 Identities=11% Similarity=0.049 Sum_probs=234.6
Q ss_pred CCCCChHHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHH
Q 010125 101 PSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDR 180 (517)
Q Consensus 101 ~~~~~~~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~ 180 (517)
+++..++..+.+.+...+... .++....+..++++++++++|.+... ..+++|+|||+|+. ++.+...
T Consensus 8 ~gp~~~~~~v~~a~~~~~~~~-----~~~~~~~~~~~~~~~la~~~~~~~~~-----~~v~~~~g~t~al~-~~~~~~~- 75 (384)
T 3zrp_A 8 VGPTTIKEDVLVAGLENNVGF-----TSKEFVEALAYSLKGLRYVMGASKNY-----QPLIIPGGGTSAME-SVTSLLK- 75 (384)
T ss_dssp SSCSCCCHHHHHHTTCCSCCT-----TSHHHHHHHHHHHHHHHHHHTCCTTS-----EEEEEESCHHHHHH-HGGGGCC-
T ss_pred CCCCCCCHHHHHHhhcccccc-----ccHHHHHHHHHHHHHHHHHhCCCCCC-----cEEEEcCCcHHHHH-HHHhhcC-
Confidence 444444445555555444321 24556778889999999999998620 16899999999998 7754421
Q ss_pred HHHHhcccCCCCeEEEeCCCCchH--HHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeec
Q 010125 181 VLNKIGRENISKLIVYGSDQTHCA--LQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATI 258 (517)
Q Consensus 181 ~~~~~g~~~~~~~~v~~s~~~H~s--~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~ 258 (517)
+++.|++++.+|++ +...++..|+ +++.+|++. ++.+|+++|+++|++.. +.+|+++.
T Consensus 76 ----------~gd~vi~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~i~~~~-----~~~v~~~~ 135 (384)
T 3zrp_A 76 ----------PNDKILVVSNGVFGDRWEQIFKRYPV---NVKVLRPSP--GDYVKPGEVEEEVRKSE-----YKLVALTH 135 (384)
T ss_dssp ----------TTCEEEEECSSHHHHHHHHHHTTSSC---EEEEECCST--TCCCCHHHHHHHHHHSC-----EEEEEEES
T ss_pred ----------CCCEEEEecCCcchHHHHHHHHHcCC---cEEEecCCC--CCCCCHHHHHHHHHhCC-----CcEEEEeC
Confidence 56678888889976 5566777888 999999975 56899999999998721 34888999
Q ss_pred cCCccccccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHH
Q 010125 259 GTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALV 338 (517)
Q Consensus 259 gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~ 338 (517)
++|++|.+.|+++|.++|++||+|+|+|++|+.+....+- .. .++|++++++||++++|.|+|+++++++. ..
T Consensus 136 ~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~-~~-----~~~d~~~~s~~K~~~~~~g~g~~~~~~~~-~~ 208 (384)
T 3zrp_A 136 VETSTGVREPVKDVINKIRKYVELIVVDGVSSVGAEEVKA-EE-----WNVDVYLTASQKALGSAAGLGLLLLSPKA-LS 208 (384)
T ss_dssp EETTTTEECCHHHHHHHHGGGEEEEEEECTTTTTTSCCCT-TT-----TTCSEEEEETTSTTCCCSSEEEEEECHHH-HH
T ss_pred CCCCCceECcHHHHHHHHHhcCCEEEEECcccccCccccc-cc-----cCCCEEEecCcccccCCCceEEEEECHHH-HH
Confidence 9999999999999999999999999999999766543221 11 16899999999999988899999986543 22
Q ss_pred hh-h-cCCccccCCccccccccccCCC-cccc-CCCC-CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 010125 339 SS-L-STNPEYLKNKATESMQVVDYKD-WQIT-LSRR-FRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRF 413 (517)
Q Consensus 339 ~~-~-~~~~~yl~~~~~~~~~~~~~~~-~~~~-~sr~-~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~ 413 (517)
.. - .....|.............+.. .... ++.. .....++.+++.+...+++++.++..++++++.+.|+++ ++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~ 287 (384)
T 3zrp_A 209 ILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL-GL 287 (384)
T ss_dssp HHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred HhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CC
Confidence 11 0 0011111100000000000000 0000 0111 122345566776666778999999999999999999998 88
Q ss_pred EEecCC----CeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecC
Q 010125 414 EIVFPC----HFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGA 489 (517)
Q Consensus 414 ~l~~~~----~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~ 489 (517)
+++.++ ...+++|++.... ..++.+.|.++|+....+. .....++|+++.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~l~~~gi~v~~g~-~~~~~~iRi~~~- 341 (384)
T 3zrp_A 288 EIVARRPESYSNTVTGVILKVAD------------------------PQKVLAGTVNEGVEFAPGV-HPAFKYFRIGHM- 341 (384)
T ss_dssp CBSCSSGGGBCSSEEEEECSSSC------------------------HHHHHHHHHTTTCCCEECC-CTTCCEEEEECC-
T ss_pred eEccCcccccCccEEEEECCCCC------------------------HHHHHHHHHHCCEEEecCC-CCCcCEEEEecc-
Confidence 876443 2456678775421 3467777878886543322 111168999985
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHH
Q 010125 490 TLTEKRHVVVAWTVVQQHLEAFQ 512 (517)
Q Consensus 490 ~~t~~~di~~l~~~l~~~~~~l~ 512 (517)
..++++|+++++++|+++.+++.
T Consensus 342 ~~~~~e~i~~~~~~l~~~l~~~~ 364 (384)
T 3zrp_A 342 GWVTPNDAIIAISVIERTLRKLG 364 (384)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHHHHHHcC
Confidence 45788899999999999988764
No 28
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.96 E-value=1.7e-26 Score=239.30 Aligned_cols=344 Identities=11% Similarity=0.097 Sum_probs=235.3
Q ss_pred ccceeCCCCCChHHHHHHHHHhccc--cc-c---c-ccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCch
Q 010125 95 NYFAYFPSSGSIAGFLGEMLSSGFN--IV-G---F-NWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTC 167 (517)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~n--~~-~---~-~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt 167 (517)
.|+++..+++.++ .+.+.+...+. .. . . .+..+........++.+++++++|.+++ .+++|+|||
T Consensus 24 iyld~~~~~~~~~-~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~-------~v~~~~ggt 95 (423)
T 3lvm_A 24 IYLDYSATTPVDP-RVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPR-------EIVFTSGAT 95 (423)
T ss_dssp EECBTTTCCCCCH-HHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGG-------GEEEESSHH
T ss_pred EeecCCCcCCCCH-HHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCC-------eEEEeCChH
Confidence 4777765555444 44555555444 11 1 1 2333445667778899999999999765 689999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHHc---CCCCCCEEEEecCCCCCcccCHHHHHHHHHHh
Q 010125 168 EAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQIV---GIDVKNFRAIKTTKSSSYGLSPDSLMAQINSD 244 (517)
Q Consensus 168 ~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~~---G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~ 244 (517)
+|+..++.++++... .+++.|+++..+|.++..++..+ |+ +++.+|+++ ++.+|+++|+++|+++
T Consensus 96 ~a~~~a~~~l~~~~~-------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~i~~~ 163 (423)
T 3lvm_A 96 ESDNLAIKGAANFYQ-------KKGKHIITSKTEHKAVLDTCRQLEREGF---EVTYLAPQR--NGIIDLKELEAAMRDD 163 (423)
T ss_dssp HHHHHHHHHHHHHHT-------TTCCEEEEETTSCHHHHHHHHHHHHTTC---EEEEECCCT--TSCCCHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHhhc-------cCCCEEEECCccchHHHHHHHHHHHcCC---EEEEeccCC--CCccCHHHHHHhcCCC
Confidence 999999887765321 14667889999999998888655 88 999999875 5789999999999764
Q ss_pred HhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCC
Q 010125 245 VEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATL 324 (517)
Q Consensus 245 ~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~ 324 (517)
+ .+|+++.++|++|.+.|+++|+++|++||+++|+|++|+.+....+. . . .++|++++++||++ +|.
T Consensus 164 ~------~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~-~----~-~~~di~~~s~sK~~-g~~ 230 (423)
T 3lvm_A 164 T------ILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDL-S----Q-LKVDLMSFSGHKIY-GPK 230 (423)
T ss_dssp E------EEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCT-T----T-SCCSEEEEESTTTT-SCS
T ss_pred c------EEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCCCcCh-h----h-cCCCEEEechHHhc-CCC
Confidence 3 48889999999999999999999999999999999999876543221 1 1 15899999999965 577
Q ss_pred cceEEEEeCchhHHhhhcCCccccCCccccccccccCCCccccCCCC-CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 010125 325 DCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRR-FRSLKLWFVIRNYGVANLRHFLRSHVNMAKLF 403 (517)
Q Consensus 325 ~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~-~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l 403 (517)
++|++++++.... .+ ..++..... ... +. ..+.. .....+..+++.+ .+.++++.++..++++++
T Consensus 231 g~G~~~~~~~~~~--~~---~~~~~~~~~----~~~---~~-~~~~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~~~l 296 (423)
T 3lvm_A 231 GIGALYVRRKPRV--RI---EAQMHGGGH----ERG---MR-SGTLPVHQIVGMGEAYRIA-KEEMATEMERLRGLRNRL 296 (423)
T ss_dssp SCEEEEECBTTBC--CC---CCSSCSSCT----TTT---TC-CSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeccccC--CC---CccccCCcc----ccc---cc-CCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 8999998754221 11 111111000 000 00 00111 1112333444443 234788899999999999
Q ss_pred HHHHhcCCCeEEecCCC---eeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeE---
Q 010125 404 ERLVSGDKRFEIVFPCH---FAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVL--- 477 (517)
Q Consensus 404 ~~~l~~~~~~~l~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~--- 477 (517)
.+.|+++|+++++.++. .++++|++.... ...+.+.|.+ +.+.+...
T Consensus 297 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~l~~~l~~---i~v~~g~~~~~ 349 (423)
T 3lvm_A 297 WNGIKDIEEVYLNGDLEHGAPNILNVSFNYVE------------------------GESLIMALKD---LAVSSGSACTS 349 (423)
T ss_dssp HHHHTTSTTEEEESCSTTBCTTEEEEEETTSC------------------------HHHHHHHTTT---EECBCCCC---
T ss_pred HHHHhcCCCEEEeCCccccCCCeEEEEeCCCC------------------------HHHHHHHHhh---heeccCccccC
Confidence 99999999999885543 357788774321 2344454444 33322111
Q ss_pred --------------C---CEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHHh
Q 010125 478 --------------G---GIYAIRFATGATLTEKRHVVVAWTVVQQHLEAFQS 513 (517)
Q Consensus 478 --------------~---g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l~~ 513 (517)
. ...++|+++. ..++++|++++++.|+++.+++.+
T Consensus 350 ~~~~~~~~~~~~g~~~~~~~~~iRi~~~-~~~t~e~i~~~~~~l~~~~~~~~~ 401 (423)
T 3lvm_A 350 ASLEPSYVLRALGLNDELAHSSIRFSLG-RFTTEEEIDYTIELVRKSIGRLRD 401 (423)
T ss_dssp --CCCCHHHHHHTCCHHHHHTEEEEECC-TTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCccccHHHHHhCCCccccCceEEEECC-CCCCHHHHHHHHHHHHHHHHHhhc
Confidence 0 1368999985 577888999999999999887653
No 29
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.96 E-value=3.3e-27 Score=242.32 Aligned_cols=345 Identities=12% Similarity=0.041 Sum_probs=236.0
Q ss_pred cceeCCCCCChHHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHH
Q 010125 96 YFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLT 175 (517)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~ 175 (517)
|+.+..+.+. +..+.+.+...+.. .| ++....+.+++.+++++++|.+++. .+++|+|||+|+..++.
T Consensus 36 ~l~~~~~~~~-~~~v~~a~~~~~~~---~~--~~~~~~~~~~~~~~la~~~g~~~~~------~v~~t~g~t~al~~~~~ 103 (393)
T 1vjo_A 36 LLLGPGPSNA-HPSVLQAMNVSPVG---HL--DPAFLALMDEIQSLLRYVWQTENPL------TIAVSGTGTAAMEATIA 103 (393)
T ss_dssp EECSSSCCCC-CHHHHHHHSSCCCC---TT--SHHHHHHHHHHHHHHHHHHTCCCSC------EEEESSCHHHHHHHHHH
T ss_pred eeccCCCCCC-CHHHHHHHhccccc---cc--CHHHHHHHHHHHHHHHHHhCCCCCc------EEEEeCchHHHHHHHHH
Confidence 4444433333 34455666655532 23 3446778889999999999986431 48999999999998887
Q ss_pred HHHHHHHHHhcccCCCCeEEEeCCCCchH--HHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceE
Q 010125 176 AARDRVLNKIGRENISKLIVYGSDQTHCA--LQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLF 253 (517)
Q Consensus 176 ~ar~~~~~~~g~~~~~~~~v~~s~~~H~s--~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~ 253 (517)
++.+ +++.|++++++|.+ +..+++..|+ +++.+|++. ++.+|+++|++++++. .+.+
T Consensus 104 ~~~~-----------~gd~Vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~l~~~-----~~~~ 162 (393)
T 1vjo_A 104 NAVE-----------PGDVVLIGVAGYFGNRLVDMAGRYGA---DVRTISKPW--GEVFSLEELRTALETH-----RPAI 162 (393)
T ss_dssp HHCC-----------TTCEEEEEESSHHHHHHHHHHHHTTC---EEEEEECCT--TCCCCHHHHHHHHHHH-----CCSE
T ss_pred hccC-----------CCCEEEEEcCChhHHHHHHHHHHcCC---ceEEEecCC--CCCCCHHHHHHHHhhC-----CceE
Confidence 7632 45678888899998 8999999999 999999975 5689999999999862 1237
Q ss_pred EEeeccCCccccccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeC
Q 010125 254 LCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKD 333 (517)
Q Consensus 254 vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~ 333 (517)
|+++.++|++|.+.|+++|.++|++||+++|+|++|+.+....+ +.. .++|+++.++||+++.|.++|++++++
T Consensus 163 v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~-----~~~-~~~di~~~s~sK~l~~~~~~G~l~~~~ 236 (393)
T 1vjo_A 163 LALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIF-----LDA-WGVDLAYSCSQKGLGCSPGASPFTMSS 236 (393)
T ss_dssp EEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCC-----TTT-TTCSEEECCSSSTTCSCSSCEEEEECH
T ss_pred EEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCccccCcCCc-----ccc-cCccEEEEcCcccccCCCceEEEEECH
Confidence 88899999999999999999999999999999999984432211 111 268999999999999998999999875
Q ss_pred chhHHhhhcCC----ccccCCccccccccccCCCccccC-CCC-CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Q 010125 334 PRALVSSLSTN----PEYLKNKATESMQVVDYKDWQITL-SRR-FRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLV 407 (517)
Q Consensus 334 ~~~~~~~~~~~----~~yl~~~~~~~~~~~~~~~~~~~~-sr~-~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l 407 (517)
+. . +.+... .++...... ..+. ........ +.. .....+..+++.+..++++++.++..++++++.+.|
T Consensus 237 ~~-~-~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L 311 (393)
T 1vjo_A 237 RA-I-EKLQRRRTKVANWYLDMNL-LGKY--WGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERL 311 (393)
T ss_dssp HH-H-HHHHTCSSCCSCSTTCHHH-HHHH--HSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HH-H-HHHhccCCCCCceecCcHh-hhhh--hccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHH
Confidence 42 2 222111 111110000 0000 00000111 111 122345566666555678889999999999999999
Q ss_pred hcCCCeEEecCCC---eeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhc-CcEEEeeeeECCEeEE
Q 010125 408 SGDKRFEIVFPCH---FAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINAS-GKAYMTHAVLGGIYAI 483 (517)
Q Consensus 408 ~~~~~~~l~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~g~~~l 483 (517)
++. +++++.+.. .++++|++... ....++.++|.++ |+...++....+..++
T Consensus 312 ~~~-g~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~i 367 (393)
T 1vjo_A 312 EDI-GLSLHVEKEYRLPTLTTVCIPDG-----------------------VDGKAVARRLLNEHNIEVGGGLGELAGKVW 367 (393)
T ss_dssp HHT-TCCBSSCGGGBCSSEEEEECCTT-----------------------CCHHHHHHHHHHHHCEECEECCGGGTTTEE
T ss_pred HHc-CCcccCCccccCCcEEEEEcCCC-----------------------CCHHHHHHHHHhhCCEEEecCccccCCCEE
Confidence 987 887764332 35677776321 0124567777776 8765444333345689
Q ss_pred EEEecCCCCcHHHHHHHHHHHHHHH
Q 010125 484 RFATGATLTEKRHVVVAWTVVQQHL 508 (517)
Q Consensus 484 R~~~~~~~t~~~di~~l~~~l~~~~ 508 (517)
|+++..+.++++++++++++|+++.
T Consensus 368 Ris~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 368 RVGLMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp EEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred EEeCCccCChHHHHHHHHHHHHHHh
Confidence 9996556778888999999998764
No 30
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.95 E-value=2.7e-27 Score=248.99 Aligned_cols=357 Identities=10% Similarity=0.068 Sum_probs=238.9
Q ss_pred ccceeCCCCCChHHH---HHHHHHhccccccccccc-ChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHH
Q 010125 95 NYFAYFPSSGSIAGF---LGEMLSSGFNIVGFNWIS-SPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAI 170 (517)
Q Consensus 95 ~~~~~~~~~~~~~~~---~~~~l~~~~n~~~~~~~~-sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~ 170 (517)
.||+....++.+..+ +.+.+....+.+...|.. .+....+.+++.+++++++|.+++ ..++|+|+|+++
T Consensus 69 iyld~~~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-------~v~~t~g~t~al 141 (465)
T 3e9k_A 69 IYFLGNSLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEK-------EIALMNALTVNL 141 (465)
T ss_dssp EECBTTTSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGG-------GEEECSCHHHHH
T ss_pred EEecCCccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcC-------CEEEECCHHHHH
Confidence 366665444433333 444443333333333332 233445666789999999999865 689999999998
Q ss_pred HHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchH----HHHHHHHcCCCCCCE-----EEEecCCCCCcccCHHHHHHHH
Q 010125 171 LCTLTAARDRVLNKIGRENISKLIVYGSDQTHCA----LQKAAQIVGIDVKNF-----RAIKTTKSSSYGLSPDSLMAQI 241 (517)
Q Consensus 171 ~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s----~~kaa~~~G~g~~~v-----~~vp~d~~~~~~~d~~~Le~~i 241 (517)
..++.+..+. +.++..|+++..+|.+ +...++..|+ ++ ..+|.+ +++.+|+++|+++|
T Consensus 142 ~~~~~~~~~~--------~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~---~~~~~~v~~~~~~--~~~~~d~~~l~~~i 208 (465)
T 3e9k_A 142 HLLMLSFFKP--------TPKRYKILLEAKAFPSDHYAIESQLQLHGL---NIEESMRMIKPRE--GEETLRIEDILEVI 208 (465)
T ss_dssp HHHHHHHCCC--------CSSSCEEEEETTCCHHHHHHHHHHHHHTTC---CHHHHEEEECCCT--TCSSCCHHHHHHHH
T ss_pred HHHHHHhccc--------cCCCCEEEEcCCcCCchHHHHHHHHHHcCC---cceeeeEEEecCC--CCCccCHHHHHHHH
Confidence 8777665321 1245678899999988 4446777888 64 344554 35799999999999
Q ss_pred HHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccC
Q 010125 242 NSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFF 321 (517)
Q Consensus 242 ~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~ 321 (517)
++... .+.+|+++.+++++|.+.|+++|.++|++||+++|+|+||+.+....+- ... ++|++++++||+++
T Consensus 209 ~~~~~---~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~-~~~-----~~D~~~~s~~K~l~ 279 (465)
T 3e9k_A 209 EKEGD---SIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYL-HDW-----GVDFACWCSYKYLN 279 (465)
T ss_dssp HHHGG---GEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCH-HHH-----TCCEEEECSSSTTC
T ss_pred HhcCC---CeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCch-hhc-----CCCEEEECcccccc
Confidence 75321 2458999999999999999999999999999999999999887765432 111 78999999999995
Q ss_pred -CCCcceEEEEeCchhHHhhhc-CCccccCCcccccc-----ccccCCCccccCCCC--CCchHHHHHHHHhcHHHHHHH
Q 010125 322 -ATLDCCCLWVKDPRALVSSLS-TNPEYLKNKATESM-----QVVDYKDWQITLSRR--FRSLKLWFVIRNYGVANLRHF 392 (517)
Q Consensus 322 -~p~~~g~l~~~~~~~~~~~~~-~~~~yl~~~~~~~~-----~~~~~~~~~~~~sr~--~~al~~~~~l~~~g~~g~~~~ 392 (517)
.|.++|+++++++.. ..+. ....|......... ..+......++.+.. ....++++++..+...+++++
T Consensus 280 ~gp~~~g~l~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~ 357 (465)
T 3e9k_A 280 AGAGGIAGAFIHEKHA--HTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKAL 357 (465)
T ss_dssp CCTTCCCEEEECGGGT--TTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred cCCCceEEEEEcHHHH--hhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHH
Confidence 788899999865432 1121 11111111000000 000000011111111 123566777877766778999
Q ss_pred HHHHHHHHHHHHHHHhcC----------CCeEEecCC----CeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHH
Q 010125 393 LRSHVNMAKLFERLVSGD----------KRFEIVFPC----HFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNR 458 (517)
Q Consensus 393 i~~~~~~a~~l~~~l~~~----------~~~~l~~~~----~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (517)
.++..++++++.+.|++. ++++++.+. ..++++|++... ..
T Consensus 358 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~~-------------------------~~ 412 (465)
T 3e9k_A 358 RKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSVP-------------------------NK 412 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECCT-------------------------TC
T ss_pred HHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecCC-------------------------HH
Confidence 999999999999999885 789988654 267888887522 13
Q ss_pred HHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 010125 459 ELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHLEAF 511 (517)
Q Consensus 459 ~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l 511 (517)
++.+.|.++|++.. +.+..++|+++++..++++||+++++.|+++.++.
T Consensus 413 ~l~~~L~~~Gi~v~----~~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~~ 461 (465)
T 3e9k_A 413 DVFQELEKRGVVCD----KRNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDSA 461 (465)
T ss_dssp CHHHHHHTTTEECE----EETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHCCEEEe----cCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHHhc
Confidence 46677777886542 33456899998677889999999999999887643
No 31
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.95 E-value=3.6e-27 Score=242.20 Aligned_cols=358 Identities=12% Similarity=0.033 Sum_probs=239.2
Q ss_pred CCCccceeCCCCCChHHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHH
Q 010125 92 QSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAIL 171 (517)
Q Consensus 92 ~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~ 171 (517)
..++.+.+.+++..++..+.+.+...+.. .| ++.......++++++++++|.+++. .+++|+|||+|+.
T Consensus 15 ~~~~~~~~~~~p~~~~~~v~~a~~~~~~~---~~--~~~~~~~~~~l~~~la~~~~~~~~~------~v~~~~g~t~al~ 83 (396)
T 2ch1_A 15 IIPEKIMMGPGPSNCSKRVLTAMTNTVLS---NF--HAELFRTMDEVKDGLRYIFQTENRA------TMCVSGSAHAGME 83 (396)
T ss_dssp CCCCCBCCSSSSCCCCHHHHHHTTSCCCC---TT--CHHHHHHHHHHHHHHHHHHTCCCSC------EEEESSCHHHHHH
T ss_pred CCCcceeecCCCCCCCHHHHHHhcccccc---CC--ChhHHHHHHHHHHHHHHHhCCCCCc------EEEECCcHHHHHH
Confidence 34566677666665666666666655432 23 4445556678889999999987531 4789999999998
Q ss_pred HHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHH--HHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCC
Q 010125 172 CTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQ--KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGL 249 (517)
Q Consensus 172 ~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~--kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~ 249 (517)
.++.+..+ +++.|++++.+|.+.. ++++..|+ +++.||++. ++.+|+++|++++++..
T Consensus 84 ~~~~~~~~-----------~gd~vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~l~~~~---- 143 (396)
T 2ch1_A 84 AMLSNLLE-----------EGDRVLIAVNGIWAERAVEMSERYGA---DVRTIEGPP--DRPFSLETLARAIELHQ---- 143 (396)
T ss_dssp HHHHHHCC-----------TTCEEEEEESSHHHHHHHHHHHHTTC---EEEEEECCT--TSCCCHHHHHHHHHHHC----
T ss_pred HHHHHhcC-----------CCCeEEEEcCCcccHHHHHHHHHcCC---ceEEecCCC--CCCCCHHHHHHHHHhCC----
Confidence 88776532 4556888889998874 57888999 999999875 57899999999998621
Q ss_pred cceEEEeeccCCccccccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEE
Q 010125 250 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL 329 (517)
Q Consensus 250 ~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l 329 (517)
+.+|+++.++|++|.+.|+++|.++|++||+++|+|++|+.+....+ +... ++|+++.++||+++.|.++|++
T Consensus 144 -~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~~~~-----~~~~-~~d~~~~s~~K~~~~~~g~g~~ 216 (396)
T 2ch1_A 144 -PKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFY-----MDKW-EIDAVYTGAQKVLGAPPGITPI 216 (396)
T ss_dssp -CSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCC-----TTTT-TCCEEECCCC-CCCCCSSCEEE
T ss_pred -CCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEccccccCCccc-----hhhc-CcCEEEEcCCccccCCCCeEEE
Confidence 23788899999999999999999999999999999999974432211 1111 5799999999999999999998
Q ss_pred EEeCchhHHhhhcCC----ccccCCcccccccccc--CCCccccCCCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHH
Q 010125 330 WVKDPRALVSSLSTN----PEYLKNKATESMQVVD--YKDWQITLSRRF-RSLKLWFVIRNYGVANLRHFLRSHVNMAKL 402 (517)
Q Consensus 330 ~~~~~~~~~~~~~~~----~~yl~~~~~~~~~~~~--~~~~~~~~sr~~-~al~~~~~l~~~g~~g~~~~i~~~~~~a~~ 402 (517)
++++. .+ ..+... ..++.+.... ..... ........+... ....+..+++.+..++++++.++..+++++
T Consensus 217 ~~~~~-~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~ 293 (396)
T 2ch1_A 217 SISPK-AL-DVIRNRRTKSKVFYWDLLLL-GNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQI 293 (396)
T ss_dssp EECHH-HH-HHHHTCSSCCSCGGGCHHHH-HHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred EECHH-HH-HhhhhccCcccceEechHHH-HHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 88653 22 222211 1111110000 00000 000000111111 113444566655556788899999999999
Q ss_pred HHHHHhcCCCeEEecCCC----eeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhc-CcEEEeeeeE
Q 010125 403 FERLVSGDKRFEIVFPCH----FAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINAS-GKAYMTHAVL 477 (517)
Q Consensus 403 l~~~l~~~~~~~l~~~~~----~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~ 477 (517)
+.+.|++. +++++.+.. ..+++|++... . ...++.++|.++ |+....+...
T Consensus 294 l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~-~----------------------~~~~~~~~L~~~~gi~v~~g~~~ 349 (396)
T 2ch1_A 294 LYEGLGKM-GLDIFVKDPRHRLPTVTGIMIPKG-V----------------------DWWKVSQYAMNNFSLEVQGGLGP 349 (396)
T ss_dssp HHHHHHHH-TCCBSSCSGGGBCTTEEEEECCTT-C----------------------CHHHHHHHHHHHHCBCCBCCCGG
T ss_pred HHHHHHHC-CCeeccCCccccCCceEEEEcCCC-C----------------------CHHHHHHHHHHhCCEEEecCccc
Confidence 99999887 787764332 12677776421 0 124566666654 8654332222
Q ss_pred CCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHHhh
Q 010125 478 GGIYAIRFATGATLTEKRHVVVAWTVVQQHLEAFQSA 514 (517)
Q Consensus 478 ~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l~~~ 514 (517)
.+..++|++++.+.++++|+++++++|+++.+++...
T Consensus 350 ~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~~~~ 386 (396)
T 2ch1_A 350 TFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATHPD 386 (396)
T ss_dssp GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCTT
T ss_pred cCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHhCcc
Confidence 2346899998656778889999999999998877543
No 32
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.95 E-value=2.1e-27 Score=240.45 Aligned_cols=341 Identities=12% Similarity=0.054 Sum_probs=231.4
Q ss_pred cceeCCCCCChHHHHHHHHHhcccccc-cccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHH
Q 010125 96 YFAYFPSSGSIAGFLGEMLSSGFNIVG-FNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTL 174 (517)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~n~~~-~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al 174 (517)
++.+.+++...|..+.+.+...+.... ..+..++....+.+++.+++++++|.++.. .+++|+|||+|+..++
T Consensus 5 ~~~~~p~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~------~v~~~~g~t~al~~~~ 78 (362)
T 3ffr_A 5 KIYFTPGPSELYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNY------EVLFLASATEIWERII 78 (362)
T ss_dssp CEEECSSSCCCCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTE------EEEEESCHHHHHHHHH
T ss_pred ceeccCCCcCCCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCc------EEEEeCCchHHHHHHH
Confidence 566777766555555544444443222 122356777888899999999999986432 6899999999998887
Q ss_pred HHHHHHHHHHhcccCCCCeEEEeCCCCchH--HHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcce
Q 010125 175 TAARDRVLNKIGRENISKLIVYGSDQTHCA--LQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPL 252 (517)
Q Consensus 175 ~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s--~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~ 252 (517)
.+... + . +++....|++ +...++..|+ +++.+|.+. ++.+|+++|+ ++++ +.
T Consensus 79 ~~l~~-----------~-~-~i~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~--~~~~------~~ 132 (362)
T 3ffr_A 79 QNCVE-----------K-K-SFHCVNGSFSKRFYEFAGELGR---EAYKEEAAF--GKGFYPADIT--VPAD------AE 132 (362)
T ss_dssp HHHCS-----------S-E-EEEEECSHHHHHHHHHHHHTTC---EEEEEECCT--TCCCCGGGCC--CCTT------CC
T ss_pred HhccC-----------C-c-EEEEcCcHHHHHHHHHHHHhCC---CeEEEecCC--CCCCCHHHHh--ccCC------cc
Confidence 76531 3 3 3344456666 3456777898 999999864 5689999998 3332 34
Q ss_pred EEEeeccCCccccccChhHHHHHHHHh-CCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEE
Q 010125 253 FLCATIGTTAITAVDPLKPLCDVAKQF-GIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWV 331 (517)
Q Consensus 253 ~vv~t~gtt~~G~idpl~eI~~i~~~~-gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~ 331 (517)
+|++++++|++|.+.|+++|+++|++| |+|+|+|++|+.+....+ +..+|+++.++|||+++|.|+|++++
T Consensus 133 ~v~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~~~~--------~~~~d~~~~s~~K~~~~~~G~g~~~~ 204 (362)
T 3ffr_A 133 IICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYPKFD--------WTKIDSVFFSVQKCFGLPAGLGVWIL 204 (362)
T ss_dssp EEEEESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSSCCC--------TTSCSEEEEETTSTTCCCSCCEEEEE
T ss_pred EEEEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCCcccC--------hhHCcEEEEecccccCCCCceEEEEE
Confidence 888899999999999999999999999 999999999976543221 12489999999999998889999888
Q ss_pred eCchhHHhhhcCC-----ccccCCcccccccccc-CCCccccCCCC-CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Q 010125 332 KDPRALVSSLSTN-----PEYLKNKATESMQVVD-YKDWQITLSRR-FRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFE 404 (517)
Q Consensus 332 ~~~~~~~~~~~~~-----~~yl~~~~~~~~~~~~-~~~~~~~~sr~-~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~ 404 (517)
++.. ........ ..+...... ..+ ........+.. .....++.+++.+..+++++++++..++++++.
T Consensus 205 ~~~~-~~~~~~~~~gg~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~ 279 (362)
T 3ffr_A 205 NDRV-IEKSKALLAKRKSIGTYHTIPS----MLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALIN 279 (362)
T ss_dssp EHHH-HHHHHHHHHTTCCCCSTTSHHH----HHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CHHH-HHHhhhccccCCCCcccccHHH----HHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 7542 11111100 111110000 000 00000011111 122345566666666678999999999999999
Q ss_pred HHHhcCCCeEEecCC----CeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCE
Q 010125 405 RLVSGDKRFEIVFPC----HFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGI 480 (517)
Q Consensus 405 ~~l~~~~~~~l~~~~----~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~ 480 (517)
+.|+++|+++++.+. ...+++|.+... ..++.+.|.++|+...++....+.
T Consensus 280 ~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~l~~~gi~~~~g~~~~~~ 334 (362)
T 3ffr_A 280 TYIESSKVFSFGVEDAKLRSMTTIVANTTML-------------------------PGEINKILEPFDMAVGAGYGSKKE 334 (362)
T ss_dssp HHHHHCSSEEESSSCGGGBCSSEEEEEESSC-------------------------HHHHHHHHGGGTEEEEECSGGGTT
T ss_pred HHHHHccCceeccCChhhcCCceEEEecCCC-------------------------HHHHHHHHHHCCeEEecCccccCC
Confidence 999999999987521 245677776431 356778888888765544333345
Q ss_pred eEEEEEecCCCCcHHHHHHHHHHHHHH
Q 010125 481 YAIRFATGATLTEKRHVVVAWTVVQQH 507 (517)
Q Consensus 481 ~~lR~~~~~~~t~~~di~~l~~~l~~~ 507 (517)
.++|+++. ..++++|+++++++|+++
T Consensus 335 ~~iRis~~-~~~~~e~i~~l~~~l~~~ 360 (362)
T 3ffr_A 335 TQIRIANF-PAHSLEQVHKLVQTLKEK 360 (362)
T ss_dssp TEEEEECC-TTSCHHHHHHHHHHHHHH
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 68999985 467888999999999875
No 33
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.95 E-value=5.7e-27 Score=236.52 Aligned_cols=338 Identities=13% Similarity=0.009 Sum_probs=229.1
Q ss_pred CCCCCChHHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHH
Q 010125 100 FPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARD 179 (517)
Q Consensus 100 ~~~~~~~~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~ 179 (517)
.+++..++..+.+.+...+.. ..++.......++++++++++|.+++ .+++|+|||+|+..++.+..+
T Consensus 6 ~~~p~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~l~~~la~~~g~~~~-------~i~~~~g~t~a~~~~~~~~~~ 73 (352)
T 1iug_A 6 TPGPVRLHPKALEALARPQLH-----HRTEAAREVFLKARGLLREAFRTEGE-------VLILTGSGTLAMEALVKNLFA 73 (352)
T ss_dssp SSSSCCCCHHHHHHHHSCCCC-----TTSHHHHHHHHHHHHHHHHHHTCSSE-------EEEEESCHHHHHHHHHHHHCC
T ss_pred cCCCCCCCHHHHHHhccCCCC-----ccCHHHHHHHHHHHHHHHHHhCCCCc-------eEEEcCchHHHHHHHHHhccC
Confidence 344444455566667666542 13455666777899999999998754 689999999999988876632
Q ss_pred HHHHHhcccCCCCeEEEeCCCCchHHH--HHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEee
Q 010125 180 RVLNKIGRENISKLIVYGSDQTHCALQ--KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCAT 257 (517)
Q Consensus 180 ~~~~~~g~~~~~~~~v~~s~~~H~s~~--kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t 257 (517)
+++.|++++.+|++.. +.++..|+ +++.+|++. ++.+|+++|++ + .+.+|+++
T Consensus 74 -----------~gd~vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~---~------~~~~v~~~ 128 (352)
T 1iug_A 74 -----------PGERVLVPVYGKFSERFYEIALEAGL---VVERLDYPY--GDTPRPEDVAK---E------GYAGLLLV 128 (352)
T ss_dssp -----------TTCEEEEEECSHHHHHHHHHHHHTTC---EEEEEECCT--TCCCCTTTSCC---S------SCSEEEEE
T ss_pred -----------CCCeEEEEeCCchhHHHHHHHHHcCC---ceEEEeCCC--CCCCCHHHHhc---c------CCcEEEEE
Confidence 4567888889999965 45566788 999999875 46899988876 2 23478889
Q ss_pred ccCCccccccChhHHHHHHHHh--CCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCch
Q 010125 258 IGTTAITAVDPLKPLCDVAKQF--GIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPR 335 (517)
Q Consensus 258 ~gtt~~G~idpl~eI~~i~~~~--gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~ 335 (517)
.++|++|.+.|+++|.++|++| |+|+|+|++|+.+....+ ... . ++|+++.++|||+++|.|+|+++++++.
T Consensus 129 ~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~-~~~----~-~~d~~~~s~~K~~~~~~g~G~~~~~~~~ 202 (352)
T 1iug_A 129 HSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVA-LEA----M-GVDAAASGSQKGLMCPPGLGFVALSPRA 202 (352)
T ss_dssp SEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCC-SGG----G-TCSEEEEESSSTTCCCSCEEEEEECHHH
T ss_pred EecCCcceecCHHHHHHHHHhhCCCCEEEEECCccccCccee-ccc----c-CeeEEEecCcccccCCCceeEEEECHHH
Confidence 9999999999999999999999 999999999975443222 111 1 5899999999999999899999986542
Q ss_pred hHHhhhcCCccccCCccccccccccCCCccccCCCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 010125 336 ALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRF-RSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFE 414 (517)
Q Consensus 336 ~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~-~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~ 414 (517)
. +.+.. ..+...-.. ............+... ....+..+++.+... ++++.++..++++++.+.|++. +++
T Consensus 203 -~-~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~-g~~ 274 (352)
T 1iug_A 203 -L-ERLKP-RGYYLDLAR---ELKAQKEGESAWTPAINLVLAVAAVLEEVLPR-LEEHLALKAWQNALLYGVGEEG-GLR 274 (352)
T ss_dssp -H-HTCCC-CSSTTCHHH---HHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHT-TCE
T ss_pred -H-HHhhC-CCceeeHHH---HHhhcccCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHC-CCc
Confidence 2 12211 111000000 0000000000011111 112344555554444 7888999999999999999988 888
Q ss_pred EecCC-CeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCc
Q 010125 415 IVFPC-HFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTE 493 (517)
Q Consensus 415 l~~~~-~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~ 493 (517)
++.++ ..++++|++... . ...++.++|.++|+....+....+..++|+++. ..++
T Consensus 275 ~~~~~~~~~~~~~~~~~~-~----------------------~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~-~~~~ 330 (352)
T 1iug_A 275 PVPKRFSPAVAAFYLPEG-V----------------------PYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLM-GAYD 330 (352)
T ss_dssp ESCSSBCTTCEEEECCTT-C----------------------CHHHHHHHHHTTTEECEECCGGGTTTEEEECCC-SSCC
T ss_pred ccccccCCeEEEEEcCCC-C----------------------CHHHHHHHHHHCCEEEEeCCCccCCCEEEEEcc-ccCC
Confidence 76443 456778876421 0 124577777788865433332223468999985 4667
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010125 494 KRHVVVAWTVVQQHLEAFQ 512 (517)
Q Consensus 494 ~~di~~l~~~l~~~~~~l~ 512 (517)
++|+++++++|+++.+++.
T Consensus 331 ~~~i~~~~~~l~~~~~~~~ 349 (352)
T 1iug_A 331 RYEALGVAGMFREVLEEIL 349 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 8899999999999887663
No 34
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.95 E-value=1.3e-26 Score=239.65 Aligned_cols=358 Identities=13% Similarity=0.061 Sum_probs=234.5
Q ss_pred ccceeCCCCCChHHHHHHHHHhcccc---cc--cccccChhhHHHHHHHHHHHHHHcCC-CcccccCCCCceEEcCCchH
Q 010125 95 NYFAYFPSSGSIAGFLGEMLSSGFNI---VG--FNWISSPAATELENIVMDWLGQMLKL-PKSFLFSGNGGGVIQGTTCE 168 (517)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~n~---~~--~~~~~sp~~~~lE~~v~~~l~~l~g~-~~~~~~~~~~~g~~t~ggt~ 168 (517)
.||++...++.+ ..+.+.+...+.. +. ..+..++.......++.+++++++|. +++ .+++|+|||+
T Consensus 30 i~l~~~~~~~~~-~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~-------~v~~~~g~t~ 101 (420)
T 1t3i_A 30 VYLDNAATSQKP-RAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPR-------EIVYTRNATE 101 (420)
T ss_dssp EECBTTTCCCCC-HHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGG-------GEEEESSHHH
T ss_pred EEecCCccCCCC-HHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCC-------eEEEcCChHH
Confidence 356655444333 4444555444422 11 11212222345566788899999998 433 6899999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchH----HHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHh
Q 010125 169 AILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCA----LQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSD 244 (517)
Q Consensus 169 a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s----~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~ 244 (517)
|+..++.+++.... .+++.|++++.+|.+ +...++..|+ +++.+|++. ++.+|+++|+++|+++
T Consensus 102 a~~~~~~~~~~~~~-------~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~l~~~ 169 (420)
T 1t3i_A 102 AINLVAYSWGMNNL-------KAGDEIITTVMEHHSNLVPWQMVAAKTGA---VLKFVQLDE--QESFDLEHFKTLLSEK 169 (420)
T ss_dssp HHHHHHHHTHHHHC-------CTTCEEEEETTCCGGGTHHHHHHHHHHCC---EEEEECBCT--TSSBCHHHHHHHCCTT
T ss_pred HHHHHHHHhhhccc-------CCCCEEEECcchhHHHHHHHHHHHHhcCc---EEEEeccCC--CCCcCHHHHHHhhCCC
Confidence 99988887742111 145678888899988 5677888999 999999874 5789999999998754
Q ss_pred HhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCC
Q 010125 245 VEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATL 324 (517)
Q Consensus 245 ~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~ 324 (517)
+.+|+++.++|++|.+.|+++|.++|++||+|+|+|++|+.+.... ..... ++|++++++||.+ +|.
T Consensus 170 ------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~-~~~~~-----~~di~~~s~sK~~-~~~ 236 (420)
T 1t3i_A 170 ------TKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPL-DVQLI-----DCDWLVASGHKMC-APT 236 (420)
T ss_dssp ------EEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCC-CHHHH-----TCSEEEEEGGGTT-SCT
T ss_pred ------ceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCccC-chhhc-----CCCEEEEehhhhc-CCC
Confidence 3478899999999999999999999999999999999998665432 11211 5899999999955 567
Q ss_pred cceEEEEeCchhHHhhhcCCc-cccCCcccc-ccccccCCCccccCCC-CC-CchHHHHHHHHhcHHHHHHHHHHHHHHH
Q 010125 325 DCCCLWVKDPRALVSSLSTNP-EYLKNKATE-SMQVVDYKDWQITLSR-RF-RSLKLWFVIRNYGVANLRHFLRSHVNMA 400 (517)
Q Consensus 325 ~~g~l~~~~~~~~~~~~~~~~-~yl~~~~~~-~~~~~~~~~~~~~~sr-~~-~al~~~~~l~~~g~~g~~~~i~~~~~~a 400 (517)
|+|++++++. .. +.+.... .+....... ....+....+.+..+. .. ..++++.+++.+...+++++.++..+++
T Consensus 237 g~G~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~ 314 (420)
T 1t3i_A 237 GIGFLYGKEE-IL-EAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELT 314 (420)
T ss_dssp TCEEEEECHH-HH-HHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred ceEEEEEchH-HH-hhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 7899888643 22 2232110 000000000 0000000011111111 11 1123333566565557888999999999
Q ss_pred HHHHHHHhcCCCeEEecCC-----CeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeee
Q 010125 401 KLFERLVSGDKRFEIVFPC-----HFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHA 475 (517)
Q Consensus 401 ~~l~~~l~~~~~~~l~~~~-----~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~ 475 (517)
+++.+.|+++++++++.++ ..++++|.+.... ..++.+.|.+.|+....+.
T Consensus 315 ~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~l~~~gi~v~~~~ 370 (420)
T 1t3i_A 315 HYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGLH------------------------ASDVATMVDQDGIAIRSGH 370 (420)
T ss_dssp HHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTBC------------------------HHHHHHHHHTTTEECBCSC
T ss_pred HHHHHHHHhCCCeEEeCCCccccccCCEEEEEECCCC------------------------HHHHHHHHHHCCeEEeecc
Confidence 9999999999899987654 3678888764210 2356677777786543321
Q ss_pred -------eECC-EeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 010125 476 -------VLGG-IYAIRFATGATLTEKRHVVVAWTVVQQHLEAFQ 512 (517)
Q Consensus 476 -------~~~g-~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l~ 512 (517)
...| ..++|+++. ..++++|+++++++|+++.+++.
T Consensus 371 ~~~~~~~~~~g~~~~iRis~~-~~~~~~~i~~~~~~l~~~~~~~~ 414 (420)
T 1t3i_A 371 HCTQPLHRLFDASGSARASLY-FYNTKEEIDLFLQSLQATIRFFS 414 (420)
T ss_dssp TTCHHHHHHTTCCCCEEEECC-TTCCHHHHHHHHHHHHHHHHHTC
T ss_pred ccchHHHHhcCCCCeEEEecC-CCCCHHHHHHHHHHHHHHHHHhc
Confidence 1113 568999985 56788899999999999987764
No 35
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.95 E-value=5.6e-26 Score=231.86 Aligned_cols=346 Identities=12% Similarity=0.089 Sum_probs=228.3
Q ss_pred ccceeCCCCCChHHHHHHHHHhcccc---c-ccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHH
Q 010125 95 NYFAYFPSSGSIAGFLGEMLSSGFNI---V-GFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAI 170 (517)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~n~---~-~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~ 170 (517)
.|+++...++.++.++ +.+...+.. + ...+..+........++.+++++++|.+++ .+++|+|||+|+
T Consensus 3 ~yld~~~~~~~~~~v~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-------~v~~~~g~t~a~ 74 (384)
T 1eg5_A 3 VYFDNNATTRVDDRVL-EEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPS-------EIFFTSCATESI 74 (384)
T ss_dssp EECBTTTCCCCCHHHH-HHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGG-------GEEEESCHHHHH
T ss_pred EEEecCccCCCCHHHH-HHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCC-------eEEEECCHHHHH
Confidence 3666665555545443 334333321 1 111222334566777888999999998755 689999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHH---HHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhc
Q 010125 171 LCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAA---QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEV 247 (517)
Q Consensus 171 ~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa---~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~ 247 (517)
..++.+++... . .+++.|++++.+|.++..++ +..|+ +++.+|+++ ++.+|+++|+++|+++
T Consensus 75 ~~~~~~~~~~~-----~--~~gd~vl~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~i~~~--- 139 (384)
T 1eg5_A 75 NWILKTVAETF-----E--KRKRTIITTPIEHKAVLETMKYLSMKGF---KVKYVPVDS--RGVVKLEELEKLVDED--- 139 (384)
T ss_dssp HHHHHHHHHHT-----T--TTCCEEEECTTSCHHHHHHHHHHHHTTC---EEEECCBCT--TSCBCHHHHHHHCCTT---
T ss_pred HHHHHhhhhhc-----c--CCCCEEEECCCCchHHHHHHHHHHhcCC---EEEEEccCC--CCccCHHHHHHHhCCC---
Confidence 98888776310 0 05567889999999987766 66788 999999875 5789999999998753
Q ss_pred CCcceEEEeeccCCccccccChhHHHHHHHHhC--CeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCc
Q 010125 248 GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFG--IWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLD 325 (517)
Q Consensus 248 g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~g--i~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~ 325 (517)
+.+|+++.+++++|.+.|+++|.++|++|| +++|+|++|+.+.... . +... ++|++++++||+++ |.|
T Consensus 140 ---~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~~~~-~----~~~~-~~di~~~s~sK~~g-~~G 209 (384)
T 1eg5_A 140 ---TFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPF-S----LEKL-EVDYASFSAHKFHG-PKG 209 (384)
T ss_dssp ---EEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCC-C----CTTT-CCSEEEEEGGGGTS-CTT
T ss_pred ---CeEEEEECCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCCccc-C----chhc-CCCEEEecHHHhcC-CCc
Confidence 347888899999999999999999999999 9999999997332211 1 1222 58999999999865 556
Q ss_pred ceEEEEeCchhHHhhhcCCccccCCccccccccccCCCccccCCCC-CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Q 010125 326 CCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRR-FRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFE 404 (517)
Q Consensus 326 ~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~-~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~ 404 (517)
+|++++++...+ . .++..... . ..+. ..+.. .....++.+++.. .+.++++.++..++++++.
T Consensus 210 ~G~~~~~~~~~~------~-~~~~~~~~----~---~~~~-~~~~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~~~l~ 273 (384)
T 1eg5_A 210 VGITYIRKGVPI------R-PLIHGGGQ----E---RGLR-SGTQNVPGIVGAARAMEIA-VEELSEAAKHMEKLRSKLV 273 (384)
T ss_dssp CEEEEECTTSCC------C-CSBCSSCT----T---TTTB-CSCCCHHHHHHHHHHHHHH-HHTHHHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCcc------c-cccccCcc----c---cccc-CCCCChHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHH
Confidence 899988764201 1 11111000 0 0000 01111 1112334455442 4567888999999999999
Q ss_pred HHHhcCCCeEEecCC---CeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeEC---
Q 010125 405 RLVSGDKRFEIVFPC---HFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLG--- 478 (517)
Q Consensus 405 ~~l~~~~~~~l~~~~---~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--- 478 (517)
+.|++ ++++++.++ ....+.|.+.... ..++.+.|.+.|+....+..+.
T Consensus 274 ~~L~~-~g~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~l~~~gi~v~~g~~~~~~~ 328 (384)
T 1eg5_A 274 SGLMN-LGAHIITPLEISLPNTLSVSFPNIR------------------------GSTLQNLLSGYGIYVSTSSACTSKD 328 (384)
T ss_dssp HHHHT-TTCEECSCTTSBCTTEEEEECTTCC------------------------HHHHHHHHHHTTEECBC--------
T ss_pred HHhCC-CCeEEeCCcccCCCCEEEEEeCCCC------------------------HHHHHHHHhhCCeEEeccccccCCC
Confidence 99988 689887543 2356777764320 2456667777786543322111
Q ss_pred ----------------CEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHHhhc
Q 010125 479 ----------------GIYAIRFATGATLTEKRHVVVAWTVVQQHLEAFQSAF 515 (517)
Q Consensus 479 ----------------g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l~~~~ 515 (517)
+..++|+++ ++.++++|++++++.|+++.+++.++.
T Consensus 329 ~~~~~~~~~~g~~~~~~~~~iRi~~-~~~~~~~~i~~~~~~l~~~~~~~~~~~ 380 (384)
T 1eg5_A 329 ERLRHVLDAMGVDRRIAQGAIRISL-CKYNTEEEVDYFLKKIEEILSFLDLTG 380 (384)
T ss_dssp ----CHHHHTTCCHHHHHHEEEEEC-CTTCCHHHHHHHHHHHHHHHHHC----
T ss_pred CcchHHHHHcCCChhhcCCeEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 136899998 456788899999999999988876543
No 36
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.95 E-value=2.2e-26 Score=234.64 Aligned_cols=343 Identities=9% Similarity=-0.006 Sum_probs=225.2
Q ss_pred eCCCCCChHHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHH
Q 010125 99 YFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAAR 178 (517)
Q Consensus 99 ~~~~~~~~~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar 178 (517)
+.+++...+..+.+.+...+.. . .++....+.+++++++++++|.+.+. ...++|+|||+|+..++.+..
T Consensus 23 ~~pgp~~~~~~v~~a~~~~~~~---~--~~~~~~~~~~~~~~~la~~~g~~~~~-----~~i~~~~ggt~al~~~~~~~~ 92 (376)
T 3f0h_A 23 FTVGPVMSSEEVRAIGAEQVPY---F--RTTEFSSTMLENEKFMLEYAKAPEGS-----KAVFMTCSSTGSMEAVVMNCF 92 (376)
T ss_dssp CSSSSCCCCHHHHHHHTSCCCC---C--SSHHHHHHHHHHHHHHHHHHTCCTTC-----EEEEESSCHHHHHHHHHHHHC
T ss_pred ecCCCCCCcHHHHHHhcCCCCC---C--CCHHHHHHHHHHHHHHHHHhCCCCCc-----eEEEEcCChhHHHHHHHHhcc
Confidence 4556555566666666554422 1 24566778888999999999997532 134558899999988877654
Q ss_pred HHHHHHhcccCCCCeEEEeCCCCchHH--HHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEe
Q 010125 179 DRVLNKIGRENISKLIVYGSDQTHCAL--QKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCA 256 (517)
Q Consensus 179 ~~~~~~~g~~~~~~~~v~~s~~~H~s~--~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~ 256 (517)
. +++.|+++...|++. ...+...|+ +++.+|++. ++.+|+++|+++++++ +.+|++
T Consensus 93 ~-----------~gd~vi~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~~~~~------~~~v~~ 150 (376)
T 3f0h_A 93 T-----------KKDKVLVIDGGSFGHRFVQLCEIHEI---PYVALKLEH--GKKLTKEKLYEYDNQN------FTGLLV 150 (376)
T ss_dssp C-----------TTCCEEEEESSHHHHHHHHHHHHTTC---CEEEEECCT--TCCCCHHHHHTTTTSC------CCEEEE
T ss_pred C-----------CCCeEEEEeCChhhHHHHHHHHHcCC---ceEEEeCCC--CCCCCHHHHHHhhccC------ceEEEE
Confidence 2 444566665656553 245677788 999999874 5789999999876543 347888
Q ss_pred eccCCccccccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchh
Q 010125 257 TIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRA 336 (517)
Q Consensus 257 t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~ 336 (517)
+.++|++|.+.|+++|+++|++||+++|+|++++.+....+ .... ++|++++++||++++|.|+|+++++++.
T Consensus 151 ~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~-~~~~-----~~d~~~~s~~K~l~~~~G~g~~~~~~~~- 223 (376)
T 3f0h_A 151 NVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADPFN-MNEC-----GADVMITGSQKVLACPPGISVIVLAPRG- 223 (376)
T ss_dssp ESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSCCC-HHHH-----TCSEEEEETTTTTCCCSSCEEEEECHHH-
T ss_pred ecccCCcceecCHHHHHHHHHHcCCEEEEEcCccccCcccc-cccc-----CccEEEecCcccccCCCceEEEEECHHH-
Confidence 88999999999999999999999999999999987654332 1111 5899999999999988899998876542
Q ss_pred HHhhhc-CCccccCCccccccccccCCCccccCCCCC-CchHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHhcCCCe
Q 010125 337 LVSSLS-TNPEYLKNKATESMQVVDYKDWQITLSRRF-RSLKLWFVIRNYGVA-NLRHFLRSHVNMAKLFERLVSGDKRF 413 (517)
Q Consensus 337 ~~~~~~-~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~-~al~~~~~l~~~g~~-g~~~~i~~~~~~a~~l~~~l~~~~~~ 413 (517)
...... ....+....... ...........+... ...++..+++.+..+ +++++.++..++++++.+.|+++ ++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~ 299 (376)
T 3f0h_A 224 VERVEKSKVRTMYFDLKDA---LKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDL-PF 299 (376)
T ss_dssp HHHHHTCCCCCSTTCHHHH---HHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTS-SE
T ss_pred HHHhhcCCCCceeecHHHH---HhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 221111 111111110000 000000000001000 113455666666555 68899999999999999999987 68
Q ss_pred EEecCCCe-eEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhc-CcEEEeeeeECCEeEEEEEecCCC
Q 010125 414 EIVFPCHF-AVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINAS-GKAYMTHAVLGGIYAIRFATGATL 491 (517)
Q Consensus 414 ~l~~~~~~-~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~g~~~lR~~~~~~~ 491 (517)
++..+... .++++...+. ...++.+.|.++ |+...++....+..++|+++. ..
T Consensus 300 ~~~~~~~~~~~~~~~~~~~------------------------~~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~-~~ 354 (376)
T 3f0h_A 300 ELVSESPANGVTSVHPTTA------------------------NAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHI-GA 354 (376)
T ss_dssp EECCSSBBTTEEEEEESSS------------------------CHHHHHHHHHHHSSEECEECCGGGTTTCEEEECC-SS
T ss_pred ccCccccCceEEEEeCCCC------------------------CHHHHHHHHHHhCCEEEecCccccCCCEEEEecC-CC
Confidence 77644333 3344432211 134667777777 765443322234568999984 46
Q ss_pred CcHHHHHHHHHHHHHHHH
Q 010125 492 TEKRHVVVAWTVVQQHLE 509 (517)
Q Consensus 492 t~~~di~~l~~~l~~~~~ 509 (517)
++++|+++++++|+++.+
T Consensus 355 ~t~e~i~~~~~~l~~~l~ 372 (376)
T 3f0h_A 355 LTHEDNTTLVNAFKDLQK 372 (376)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 788899999999988765
No 37
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.95 E-value=8e-26 Score=232.49 Aligned_cols=355 Identities=15% Similarity=0.092 Sum_probs=232.7
Q ss_pred ccceeCCCCCChHHHHHHHHHhcccc-----cccccccChhhHHHHHHHHHHHHHHcCC-CcccccCCCCceEEcCCchH
Q 010125 95 NYFAYFPSSGSIAGFLGEMLSSGFNI-----VGFNWISSPAATELENIVMDWLGQMLKL-PKSFLFSGNGGGVIQGTTCE 168 (517)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~n~-----~~~~~~~sp~~~~lE~~v~~~l~~l~g~-~~~~~~~~~~~g~~t~ggt~ 168 (517)
.||++...++.++ .+.+.+...+.. ....+..+........++++++++++|. +++ .+++|+|||+
T Consensus 25 i~l~~~~~~~~~~-~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~-------~v~~~~g~t~ 96 (406)
T 1kmj_A 25 AYLDSAASAQKPS-QVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAE-------ELVFVRGTTE 96 (406)
T ss_dssp EECCTTTCCCCCH-HHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGG-------GEEEESSHHH
T ss_pred EEecCCccCCCCH-HHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCC-------eEEEeCChhH
Confidence 4666665554444 444444444322 1111111223455666788899999998 433 6899999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHH----HHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHh
Q 010125 169 AILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCAL----QKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSD 244 (517)
Q Consensus 169 a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~----~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~ 244 (517)
|+..++.+++.... .+++.|++++.+|++. ...++..|+ +++.+|++. ++.+|+++|+++|+++
T Consensus 97 a~~~~~~~~~~~~~-------~~gd~vl~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~--~~~~d~~~l~~~l~~~ 164 (406)
T 1kmj_A 97 GINLVANSWGNSNV-------RAGDNIIISQMEHHANIVPWQMLCARVGA---ELRVIPLNP--DGTLQLETLPTLFDEK 164 (406)
T ss_dssp HHHHHHHHTHHHHC-------CTTCEEEEETTCCGGGTHHHHHHHHHHTC---EEEEECBCT--TSCBCGGGHHHHCCTT
T ss_pred HHHHHHHHhhhhcC-------CCCCEEEEecccchHHHHHHHHHHHhCCC---EEEEEecCC--CCCcCHHHHHHHhccC
Confidence 99998887753111 1456788888998764 345677899 999999874 5789999999998754
Q ss_pred HhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCC
Q 010125 245 VEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATL 324 (517)
Q Consensus 245 ~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~ 324 (517)
+.+|+++.++|++|.+.|+++|+++|++||+++|+|++|+.+....+ ... . +.|+++.++||++ +|.
T Consensus 165 ------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~~~~-~~~----~-~~d~~~~s~~K~~-g~~ 231 (406)
T 1kmj_A 165 ------TRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVD-VQA----L-DCDFYVFSGHKLY-GPT 231 (406)
T ss_dssp ------EEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCC-HHH----H-TCSEEEEEGGGTT-SCT
T ss_pred ------CeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCCCCc-ccc----c-CCCEEEEEchhcc-CCC
Confidence 34788999999999999999999999999999999999987654221 111 1 5899999999988 566
Q ss_pred cceEEEEeCchhHHhhhcCCccccCCccccc---c--ccccCCCccccCCC-CCCc-hHHHHHHHHhcHHHHHHHHHHHH
Q 010125 325 DCCCLWVKDPRALVSSLSTNPEYLKNKATES---M--QVVDYKDWQITLSR-RFRS-LKLWFVIRNYGVANLRHFLRSHV 397 (517)
Q Consensus 325 ~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~---~--~~~~~~~~~~~~sr-~~~a-l~~~~~l~~~g~~g~~~~i~~~~ 397 (517)
|+|++++++. .. +.+.... ........ . ..+....+.++.+. ...+ +++..+++.+...+++++.++..
T Consensus 232 G~G~~~~~~~-~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~ 307 (406)
T 1kmj_A 232 GIGILYVKEA-LL-QEMPPWE--GGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQ 307 (406)
T ss_dssp TCEEEEECHH-HH-HHCCCSS--CSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CcEEEEEeHH-HH-hhcCCcc--cCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 7999998633 22 2232110 00000000 0 00000001111111 1111 22224555554557788889999
Q ss_pred HHHHHHHHHHhcCCCeEEecCC-CeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeee
Q 010125 398 NMAKLFERLVSGDKRFEIVFPC-HFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAV 476 (517)
Q Consensus 398 ~~a~~l~~~l~~~~~~~l~~~~-~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~ 476 (517)
++++++.+.|+++|+++++.++ ..++++|.+.+.. ..++.+.|.+.|+....+..
T Consensus 308 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~l~~~gi~v~~g~~ 363 (406)
T 1kmj_A 308 NLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHH------------------------AYDVGSFLDNYGIAVRTGHH 363 (406)
T ss_dssp HHHHHHHHHHTTSTTEEEESCTTCCSEEEEEETTCC------------------------HHHHHHHHHHTTEECEEECT
T ss_pred HHHHHHHHHHhcCCCeEEecCCCcCCEEEEEECCCC------------------------HHHHHHHHhhCCcEEEeccc
Confidence 9999999999998899987542 6778888764210 23466677777865433321
Q ss_pred --------ECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 010125 477 --------LGGIYAIRFATGATLTEKRHVVVAWTVVQQHLEAF 511 (517)
Q Consensus 477 --------~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l 511 (517)
+....++|+++. ..++++|++++++.|+++.+.+
T Consensus 364 ~~~~~~~~~g~~~~iRis~~-~~~t~~~i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 364 CAMPLMAYYNVPAMCRASLA-MYNTHEEVDRLVTGLQRIHRLL 405 (406)
T ss_dssp TCHHHHHHTTCSCEEEEECC-TTCCHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHhcCCCCeEEEEee-cCCCHHHHHHHHHHHHHHHHhh
Confidence 122468999985 5678889999999999987654
No 38
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=99.95 E-value=2.7e-26 Score=235.09 Aligned_cols=335 Identities=10% Similarity=0.058 Sum_probs=229.5
Q ss_pred HHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhc
Q 010125 107 AGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIG 186 (517)
Q Consensus 107 ~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g 186 (517)
+..+.+.+...+......|... ..++++++.+|+++.+|++... ...++|+|||+|+..++.+...
T Consensus 42 ~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~-----~~i~~~~g~~~a~~~~~~~l~~------- 107 (391)
T 3dzz_A 42 APEIMASMEEKLKVAAFGYESV--PAEYYKAVADWEEIEHRARPKE-----DWCVFASGVVPAISAMVRQFTS------- 107 (391)
T ss_dssp CHHHHHHHHHHHTTCCCCCBCC--CHHHHHHHHHHHHHHHSCCCCG-----GGEEEESCHHHHHHHHHHHHSC-------
T ss_pred CHHHHHHHHHHHhcCcCCCCCC--CHHHHHHHHHHHHHHhCCCCCH-----HHEEECCCHHHHHHHHHHHhCC-------
Confidence 3445555655555444444433 6889999999999999954221 2789999999999888776532
Q ss_pred ccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecC-CCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcccc
Q 010125 187 RENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTT-KSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITA 265 (517)
Q Consensus 187 ~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d-~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~ 265 (517)
+++.|+++.++|.++..+++..|. +++.+|++ .++++.+|+++|++++++. .+.+|+++.+++++|.
T Consensus 108 ----~gd~vl~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~d~~~l~~~l~~~-----~~~~v~i~~p~nptG~ 175 (391)
T 3dzz_A 108 ----PGDQILVQEPVYNMFYSVIEGNGR---RVISSDLIYENSKYSVNWADLEEKLATP-----SVRMMVFCNPHNPIGY 175 (391)
T ss_dssp ----TTCEEEECSSCCHHHHHHHHHTTC---EEEECCCEEETTEEECCHHHHHHHHTST-----TEEEEEEESSBTTTTB
T ss_pred ----CCCeEEECCCCcHHHHHHHHHcCC---EEEEeeeeecCCceeecHHHHHHHHhcc-----CceEEEEECCCCCCCc
Confidence 556789999999999999999999 99999986 2345679999999999732 1347788899999999
Q ss_pred c---cChhHHHHHHHHhCCeEEcccccccccccCccccccccCC-CCCC--eeeeccccccC-CCCcceEEEEeCchhHH
Q 010125 266 V---DPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGV-EGAD--SFSLNAHKWFF-ATLDCCCLWVKDPRALV 338 (517)
Q Consensus 266 i---dpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~-~~aD--si~~~~hK~l~-~p~~~g~l~~~~~~~~~ 338 (517)
+ +++++|+++|++||+++|+|++|+++.............. ...| .++.++||+++ .+..+|+++++++....
T Consensus 176 ~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~ 255 (391)
T 3dzz_A 176 AWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRA 255 (391)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSHHHHH
T ss_pred ccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheEEEECCHHHHH
Confidence 9 8899999999999999999999987664322222211111 1245 88899999996 55778999887665432
Q ss_pred hhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEec
Q 010125 339 SSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSG-DKRFEIVF 417 (517)
Q Consensus 339 ~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~-~~~~~l~~ 417 (517)
.+....... +...........+..+++. +.+.++++.++..++++++.+.|++ +|++++..
T Consensus 256 -~~~~~~~~~----------------~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 317 (391)
T 3dzz_A 256 -RAEESFFLA----------------GIGEPNLLAIPAAIAAYEE-GHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLD 317 (391)
T ss_dssp -HHHHHHHHH----------------TCSSCCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECC
T ss_pred -HHHHHHHhh----------------ccCCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEec
Confidence 221100000 0000111122233334443 4566888889999999999999998 89998764
Q ss_pred CCCeeEE-EEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHH-hcCcEEEeeeeEC--CEeEEEEEecCCCCc
Q 010125 418 PCHFAVV-CFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESIN-ASGKAYMTHAVLG--GIYAIRFATGATLTE 493 (517)
Q Consensus 418 ~~~~~~v-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--g~~~lR~~~~~~~t~ 493 (517)
+..+.+ ++.+...+ ....++.++|. +.|+...++..+. +..++|++++ ++
T Consensus 318 -~~~~~~~~~~~~~~~----------------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~---~~ 371 (391)
T 3dzz_A 318 -SNASYLAWVDISALG----------------------MNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLA---CP 371 (391)
T ss_dssp -CCBSSEEEEECGGGC----------------------SCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECC---SC
T ss_pred -cCceEEEEEehhhcC----------------------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec---CC
Confidence 444444 35554211 01345667774 6786554433332 3578999985 47
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010125 494 KRHVVVAWTVVQQHLEAF 511 (517)
Q Consensus 494 ~~di~~l~~~l~~~~~~l 511 (517)
+++++++++.|.++.+++
T Consensus 372 ~~~i~~~l~~l~~~l~~~ 389 (391)
T 3dzz_A 372 KELVIDGMQRLKQGVLNL 389 (391)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 889999999999887654
No 39
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.94 E-value=1.3e-26 Score=238.25 Aligned_cols=350 Identities=12% Similarity=0.059 Sum_probs=211.7
Q ss_pred CCccceeCCCCCChHHHHHHHHHhccc----ccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchH
Q 010125 93 SPNYFAYFPSSGSIAGFLGEMLSSGFN----IVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCE 168 (517)
Q Consensus 93 ~p~~~~~~~~~~~~~~~~~~~l~~~~n----~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~ 168 (517)
+..|+++...++.++.++ +.+...+. .....+..+.....+.+++.+++++++|.+++ .+++|+|||+
T Consensus 20 ~~iyld~~~~~~~~~~v~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~-------~v~~~~g~t~ 91 (400)
T 3vax_A 20 HMTYLDAAATTRVDQRVA-DIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPD-------ELIFTSGATE 91 (400)
T ss_dssp --CCCCCCCCSSSCHHHH-HHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGG-------GEEEESCHHH
T ss_pred CcEEecCCCCCCCCHHHH-HHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCC-------cEEEeCCHHH
Confidence 445788776655555444 33333321 11113444455667788899999999999765 6899999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCe-EEEeCCCCchHHHHHHHHc---CCCCCCEEEEecCCCCCcccCHHHHHHHHHHh
Q 010125 169 AILCTLTAARDRVLNKIGRENISKL-IVYGSDQTHCALQKAAQIV---GIDVKNFRAIKTTKSSSYGLSPDSLMAQINSD 244 (517)
Q Consensus 169 a~~~al~~ar~~~~~~~g~~~~~~~-~v~~s~~~H~s~~kaa~~~---G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~ 244 (517)
|+..++.+.+....+ +++ .|+++...|+++..++..+ |+ +++.+|+++ ++.+|+++|+++|+++
T Consensus 92 al~~~~~~l~~~~~~-------~gd~~Vl~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~i~~~ 159 (400)
T 3vax_A 92 SNNIALLGLAPYGER-------TGRRHIITSAIEHKAVLEPLEHLAGRGF---EVDFLTPGP--SGRISVEGVMERLRPD 159 (400)
T ss_dssp HHHHHHHTTHHHHHH-------HTCCEEEEETTSCHHHHHHHHHHHTTTC---EEEEECCCT--TCCCCHHHHHTTCCTT
T ss_pred HHHHHHHHHHHhhcc-------CCCCEEEECccccHhHHHHHHHHHhcCC---eEEEEccCC--CCCcCHHHHHHhcCCC
Confidence 999888877532111 345 6888889999988777664 77 899999875 5799999999998754
Q ss_pred HhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCC
Q 010125 245 VEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATL 324 (517)
Q Consensus 245 ~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~ 324 (517)
+ .+|+++.++|++|.+.|+++|.++|++||+++++|++|+.+....+ +... +|+++.++||+ ++|.
T Consensus 160 ~------~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~-----~~~~--~d~~~~s~~K~-~g~~ 225 (400)
T 3vax_A 160 T------LLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPGD-----LTTP--IDMISISGHKI-GAPK 225 (400)
T ss_dssp E------EEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSGGG-----GGSC--CSEEEEETGGG-TSCS
T ss_pred c------eEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCCcC-----hhhc--CcEEEEeHHHh-CCCC
Confidence 3 4899999999999999999999999999999999999976543221 2222 89999999995 4577
Q ss_pred cceEEE-EeCchhHHhhhcCCccccCCccccccccccCCCccccCCCCCCch---HHHHHHHHhcHHHHHHHHHHHHHHH
Q 010125 325 DCCCLW-VKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSL---KLWFVIRNYGVANLRHFLRSHVNMA 400 (517)
Q Consensus 325 ~~g~l~-~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al---~~~~~l~~~g~~g~~~~i~~~~~~a 400 (517)
|+|+++ ++++......... ..++..... ......+ ..... .+..+++.+ .++++++.++..+++
T Consensus 226 g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~~~-~~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~ 293 (400)
T 3vax_A 226 GVGALVTRRREEMDDERVPL-EPIMFGGGQ---------ERKLRPG-TLPVPLIMGLAEAAKIF-EAEHAQWQVAAQDLR 293 (400)
T ss_dssp SCEEEEECBCSSSTTCBCCC-CCSSCSSCT---------GGGTSCS-CCCHHHHHHHHHHHHHH-HHSHHHHHHHHHHHH
T ss_pred ceEEEEEecchhcccccccc-CceecCCCc---------eeeeecC-CCCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHH
Confidence 899999 8874321000000 111111000 0000000 01112 222333332 456788999999999
Q ss_pred HHHHHHHhcCCCeEEecCCC---eeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHH-HHHHhcCcEEEeeee
Q 010125 401 KLFERLVSGDKRFEIVFPCH---FAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELL-ESINASGKAYMTHAV 476 (517)
Q Consensus 401 ~~l~~~l~~~~~~~l~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~g~~~~~~~~ 476 (517)
+++.+.|+ .+++++..++. .++++|.+.... . ..+.+.+. .-+...|..+.....
T Consensus 294 ~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~---~~l~~~L~~gi~v~~g~~~~~~~~ 352 (400)
T 3vax_A 294 SRLLAGLA-STSFQVNGDQDHVVPHILNLSFEDVD-----------------A---EAFLVTLKDLVAVATGSASTSASF 352 (400)
T ss_dssp HHHHHHHT-TTTCEECSCTTSBCTTEEEEECTTCC-----------------H---HHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred HHHHHhhC-CCCEEEeCCcccCCCCEEEEEeCCCC-----------------H---HHHHHHHhcCcEEEecccccCCCC
Confidence 99999999 88999875543 357778765321 0 12222222 112234444432210
Q ss_pred ----------EC---CEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 010125 477 ----------LG---GIYAIRFATGATLTEKRHVVVAWTVVQQHLE 509 (517)
Q Consensus 477 ----------~~---g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~ 509 (517)
.. ...++|+++++..++++++++++++|+++.+
T Consensus 353 ~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~ 398 (400)
T 3vax_A 353 TPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKP 398 (400)
T ss_dssp CCHHHHHTTTCCHHHHTSEEEEEEEEC-------------------
T ss_pred CccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhc
Confidence 00 0368999983346677899999999988764
No 40
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=99.94 E-value=4.4e-26 Score=233.59 Aligned_cols=332 Identities=12% Similarity=0.093 Sum_probs=227.7
Q ss_pred HHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhc
Q 010125 107 AGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIG 186 (517)
Q Consensus 107 ~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g 186 (517)
+..+.+.+...++.....|...++..++++++.+|+.+.+|++... ...++|+|||+|+..++.++.+
T Consensus 45 ~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~-----~~v~~~~g~~~a~~~~~~~~~~------- 112 (388)
T 1j32_A 45 PKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGA-----DNILVTNGGKQSIFNLMLAMIE------- 112 (388)
T ss_dssp CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCG-----GGEEEESHHHHHHHHHHHHHCC-------
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCh-----hhEEEcCCHHHHHHHHHHHhcC-------
Confidence 3445555555554333456666678999999999999999874321 2689999999999888876632
Q ss_pred ccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 187 RENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 187 ~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
+++.|++++++|.++..+++..|+ +++.+|+++++++.+|+++|++++++++ .+|+++.++|++|.+
T Consensus 113 ----~gd~vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~~------~~v~~~~p~nptG~~ 179 (388)
T 1j32_A 113 ----PGDEVIIPAPFWVSYPEMVKLAEG---TPVILPTTVETQFKVSPEQIRQAITPKT------KLLVFNTPSNPTGMV 179 (388)
T ss_dssp ----TTCEEEEESSCCTHHHHHHHHTTC---EEEEECCCGGGTTCCCHHHHHHHCCTTE------EEEEEESSCTTTCCC
T ss_pred ----CCCEEEEcCCCChhHHHHHHHcCC---EEEEecCCcccCCCCCHHHHHHhcCcCc------eEEEEeCCCCCCCcC
Confidence 456788889999999999999999 9999998753357899999999987533 377788899999998
Q ss_pred ---cChhHHHHHHHHhCCeEEcccccccccccCcccccccc---CCCCCCeeeeccccccCCC-CcceEEEEeCchhHHh
Q 010125 267 ---DPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFID---GVEGADSFSLNAHKWFFAT-LDCCCLWVKDPRALVS 339 (517)
Q Consensus 267 ---dpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~---g~~~aDsi~~~~hK~l~~p-~~~g~l~~~~~~~~~~ 339 (517)
+++++|+++|++||+++|+|++|+.+............ .....|.++.++||+++.| ..+|++++++. +.+
T Consensus 180 ~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~--~~~ 257 (388)
T 1j32_A 180 YTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVP--LVK 257 (388)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECCHH--HHH
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcccceEEEEeCHH--HHH
Confidence 45999999999999999999999876542211111111 0125789999999999633 45899887543 222
Q ss_pred hhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec
Q 010125 340 SLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNY--GVANLRHFLRSHVNMAKLFERLVSGDKRFEIVF 417 (517)
Q Consensus 340 ~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~--g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~ 417 (517)
.+.....+. +.....+..+++...+ +.+.++++.++..++++++.+.|++.|++++..
T Consensus 258 ~l~~~~~~~--------------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~ 317 (388)
T 1j32_A 258 AATKIQGHS--------------------TSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPK 317 (388)
T ss_dssp HHHHHHHTT--------------------TCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCC
T ss_pred HHHHHHhhc--------------------ccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhCCCCcccC
Confidence 221100000 0011233444443333 456678888999999999999999988888763
Q ss_pred CCCeeEEEE-EecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHh-cCcEEEeeeeECCEeEEEEEecCCCCcHH
Q 010125 418 PCHFAVVCF-RVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINA-SGKAYMTHAVLGGIYAIRFATGATLTEKR 495 (517)
Q Consensus 418 ~~~~~~v~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~g~~~lR~~~~~~~t~~~ 495 (517)
+..+++++ .+...+ ....++.+.|.+ .|+.+..+..+....++|+++. ++++
T Consensus 318 -~~~~~~~~~~~~~~~----------------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~---~~~~ 371 (388)
T 1j32_A 318 -PDGAFYMFPSIAKTG----------------------RSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYA---TDLD 371 (388)
T ss_dssp -CCBTTEECCBCGGGT----------------------CCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC---SCHH
T ss_pred -CCeeEEEEEecCCCC----------------------CCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEec---CCHH
Confidence 44444333 232100 012456666665 5865544433333468999984 4788
Q ss_pred HHHHHHHHHHHHHHHH
Q 010125 496 HVVVAWTVVQQHLEAF 511 (517)
Q Consensus 496 di~~l~~~l~~~~~~l 511 (517)
+++++++.|.++.+++
T Consensus 372 ~i~~~~~~l~~~l~~~ 387 (388)
T 1j32_A 372 TIKRGMERLEKFLHGI 387 (388)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999887664
No 41
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.94 E-value=1.1e-25 Score=228.10 Aligned_cols=314 Identities=11% Similarity=0.096 Sum_probs=211.6
Q ss_pred HHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchH-HHHHHHH
Q 010125 133 ELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCA-LQKAAQI 211 (517)
Q Consensus 133 ~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s-~~kaa~~ 211 (517)
....++++++++++|.+.+. ..+++|+|||+|+..++.+++.. ++.+++++...|.+ +..++..
T Consensus 37 ~~~~~l~~~la~~~g~~~~~-----~~v~~~~g~t~a~~~~~~~~~~~----------gd~vi~~~~~~~~~~~~~~~~~ 101 (366)
T 1m32_A 37 GVVEQIRQQLTALATASEGY-----TSVLLQGSGSYAVEAVLGSALGP----------QDKVLIVSNGAYGARMVEMAGL 101 (366)
T ss_dssp TTHHHHHHHHHHHHCSSSSE-----EEEEEESCHHHHHHHHHHHSCCT----------TCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcC-----cEEEEecChHHHHHHHHHHhcCC----------CCeEEEEeCCCccHHHHHHHHH
Confidence 44456777888888843211 25899999999999888776421 33455666678876 5678888
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEccccccc
Q 010125 212 VGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAG 291 (517)
Q Consensus 212 ~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~ 291 (517)
.|+ +++.+|++. ++.+|+++|+++|++.. .+.+|+++.++|++|.+.|+++|.++|++||+|+|+|++|+.
T Consensus 102 ~g~---~~~~v~~~~--~~~~d~~~l~~~l~~~~----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~ 172 (366)
T 1m32_A 102 MGI---AHHAYDCGE--VARPDVQAIDAILNADP----TISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSF 172 (366)
T ss_dssp HTC---CEEEEECCT--TSCCCHHHHHHHHHHCT----TCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTT
T ss_pred hCC---ceEEEeCCC--CCCCCHHHHHHHHhcCC----CeEEEEEecccCCcceecCHHHHHHHHHHcCCEEEEECCccc
Confidence 999 999999875 56899999999998642 134777888999999999999999999999999999999976
Q ss_pred ccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCC-ccccCCccccccccccCCCccc-cCC
Q 010125 292 SACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTN-PEYLKNKATESMQVVDYKDWQI-TLS 369 (517)
Q Consensus 292 ~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~-~~yl~~~~~~~~~~~~~~~~~~-~~s 369 (517)
+....+ +.. .++|+++.++|||+++|.|+|++++++.. .+.+... .+|...... .+..+.. ...
T Consensus 173 ~~~~~~-----~~~-~~~di~~~s~~K~~~~~~g~G~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 238 (366)
T 1m32_A 173 GGIPMD-----IAA-LHIDYLISSANKCIQGVPGFAFVIAREQK--LAACKGHSRSLSLDLYA------QWRCMEDNHGK 238 (366)
T ss_dssp TTSCCC-----TTT-TTCSEEEEESSSTTCCCSSEEEEEEEHHH--HTTCTTCCSCSTTCHHH------HHHHHHHTTTC
T ss_pred cCcCcc-----ccc-cCccEEEecCcccccCCCceEEEEECHHH--HHhhcCCCCCccccHHH------HHhhhcccCCC
Confidence 543221 111 15899999999999888899999987542 2222111 111110000 0000000 011
Q ss_pred CCC--C---chHHHHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHhcCCCeEEecC--CCee-EEEEEecCC-Ccchhhhh
Q 010125 370 RRF--R---SLKLWFVIRNYGVAN-LRHFLRSHVNMAKLFERLVSGDKRFEIVFP--CHFA-VVCFRVSPS-PVLMDKLK 439 (517)
Q Consensus 370 r~~--~---al~~~~~l~~~g~~g-~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~--~~~~-~v~f~~~~~-~~~~~~~~ 439 (517)
+++ . ...+..+++.+...| ++++.++..++++++.+.|++. +++++.+ +..+ +++|++... +
T Consensus 239 ~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------- 310 (366)
T 1m32_A 239 WRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL-GFNTLLDDELHSPIITAFYSPEDPQ------- 310 (366)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCCCTT-------
T ss_pred CCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC-CCeeccCchhcCceEEEEEcCccCC-------
Confidence 111 1 124455566555555 7888999999999999999987 7776544 2344 677776530 1
Q ss_pred hhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 010125 440 TKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHLE 509 (517)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~ 509 (517)
....++.+.|.++|+.. .+....+..++|+++. ..++++|+++++++|+++.+
T Consensus 311 ---------------~~~~~~~~~l~~~gi~v-~~~~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~~ 363 (366)
T 1m32_A 311 ---------------YRFSEFYRRLKEQGFVI-YPGKVSQSDCFRIGNI-GEVYAADITALLTAIRTAMY 363 (366)
T ss_dssp ---------------CCHHHHHHHHHHTTEEC-EECCCSSSCEEEEECC-SSCCHHHHHHHHHHHHHHCT
T ss_pred ---------------CCHHHHHHHHHHCCEEE-ECCcCCCCCEEEEecC-CCCCHHHHHHHHHHHHHHHH
Confidence 01245677777778644 3333224568999985 56678899999999987754
No 42
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.94 E-value=5.7e-26 Score=232.47 Aligned_cols=315 Identities=12% Similarity=0.105 Sum_probs=215.2
Q ss_pred HHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHH----
Q 010125 132 TELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQK---- 207 (517)
Q Consensus 132 ~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~k---- 207 (517)
.....++.+.+++++|.+++ .+++|+|||+|+..++.+.+- .+++.|+++..+|.+...
T Consensus 58 ~~~~~~l~~~la~~~g~~~~-------~v~~~~g~t~a~~~~~~~~~~----------~~gd~vl~~~~~~~~~~~~~~~ 120 (390)
T 1elu_A 58 QQLIAQLRQALAETFNVDPN-------TITITDNVTTGCDIVLWGLDW----------HQGDEILLTDCEHPGIIAIVQA 120 (390)
T ss_dssp HHHHHHHHHHHHHHTTSCGG-------GEEEESSHHHHHHHHHHHSCC----------CTTCEEEEETTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHH-------HEEEeCChHHHHHHHHhCCCC----------CCCCEEEEecCcccHHHHHHHH
Confidence 35566778888888998754 689999999999888776521 045678888899998654
Q ss_pred HHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHH----HhCCeE
Q 010125 208 AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAK----QFGIWV 283 (517)
Q Consensus 208 aa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~----~~gi~l 283 (517)
.++..|+ +++.+|++...++.+|+++|+++|+++ +.+|+++.++|++|.+.|+++|.++|+ +||+++
T Consensus 121 ~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~l 191 (390)
T 1elu_A 121 IAARFGI---TYRFFPVAATLNQGDAAAVLANHLGPK------TRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRV 191 (390)
T ss_dssp HHHHHCC---EEEEECCGGGSSSSCHHHHHHTTCCTT------EEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEE
T ss_pred HHHHhCc---EEEEEcCCCCCCccchHHHHHHhcCCC------ceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEE
Confidence 3677899 999999863235789999999988653 347888999999999999999999999 999999
Q ss_pred EcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCC-ccccCCccccccccccCC
Q 010125 284 HVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTN-PEYLKNKATESMQVVDYK 362 (517)
Q Consensus 284 hvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~-~~yl~~~~~~~~~~~~~~ 362 (517)
|+|++|+.+....+ +.. ...|+++.++|||+++|.++|+++++++. . +.+... ..+-..........+.+.
T Consensus 192 i~Dea~~~g~~~~~-----~~~-~~~d~~~~s~~K~~~~~~g~G~~~~~~~~-~-~~~~~~~~g~~~~~~~~~~~~~~~~ 263 (390)
T 1elu_A 192 LVDGAQSAGSLPLD-----FSR-LEVDYYAFTGHKWFAGPAGVGGLYIHGDC-L-GEINPTYVGWRSITYGAKGEPTGWA 263 (390)
T ss_dssp EEECTTTBTTBCCC-----TTT-SCCSEEEEESSSTTCCCTTCEEEEECTTT-G-GGCCCCSCCTTTEEECTTSCEEEEC
T ss_pred EEEcccccCCcCCC-----hhh-cCCCEEEccccccccCCCceEEEEECHHh-H-hhcCCccccCCcccccccCcccccc
Confidence 99999975433221 111 25899999999999999999999997542 2 222110 000000000000000000
Q ss_pred C--ccccC-CCC-CCchHHHHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHhcCCCeEEecC--CCeeEEEEEecCCCcch
Q 010125 363 D--WQITL-SRR-FRSLKLWFVIRNYGVAN-LRHFLRSHVNMAKLFERLVSGDKRFEIVFP--CHFAVVCFRVSPSPVLM 435 (517)
Q Consensus 363 ~--~~~~~-sr~-~~al~~~~~l~~~g~~g-~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~--~~~~~v~f~~~~~~~~~ 435 (517)
+ ..+.. +.. .....+..+++.+...+ ++++.++..++++++.+.|+++++++++.+ +..++++|++....
T Consensus 264 ~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~--- 340 (390)
T 1elu_A 264 EGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSPL--- 340 (390)
T ss_dssp SGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEECSSS---
T ss_pred cchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCccccccEEEEEcCCCC---
Confidence 0 01111 111 11233455666554445 888999999999999999999889988753 35778888774210
Q ss_pred hhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 010125 436 DKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQH 507 (517)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~ 507 (517)
...++.++|.++|+...... +..++|+++ +..++++|+++++++|+++
T Consensus 341 --------------------~~~~~~~~l~~~gi~v~~~~---~~~~iRis~-~~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 341 --------------------GHRAIVQKLEEQRIYLRTIA---DPDCIRACC-HYITDEEEINHLLARLADF 388 (390)
T ss_dssp --------------------CHHHHHHHHHHTTEECEEET---TTTEEEEEC-CTTCCHHHHHHHHHHHTTC
T ss_pred --------------------CHHHHHHHHHHCCEEEEecC---CCCeEEEec-ccCCCHHHHHHHHHHHHhh
Confidence 12456677777786543332 346899998 4567888999999988754
No 43
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.94 E-value=8.9e-26 Score=230.60 Aligned_cols=357 Identities=12% Similarity=0.038 Sum_probs=227.6
Q ss_pred CccceeCCCCCChHHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHH
Q 010125 94 PNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCT 173 (517)
Q Consensus 94 p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~a 173 (517)
|+.+.+.+++...+..+.+.+...... .+ +|.......+++++++++++..... ....+++|+|||+|+..+
T Consensus 4 ~~~~~~~p~p~~~~~~v~~a~~~~~~~---~~--~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~v~~~~g~t~al~~~ 75 (385)
T 2bkw_A 4 SVDTLLIPGPIILSGAVQKALDVPSLG---HT--SPEFVSIFQRVLKNTRAVFKSAAAS---KSQPFVLAGSGTLGWDIF 75 (385)
T ss_dssp CCCEECSSSSCCCCHHHHHTTSCCCCC---TT--SHHHHHHHHHHHHHHHHHTTCCGGG---TCEEEEEESCTTHHHHHH
T ss_pred ccceeecCCCcCchHHHHHHHhccccc---cC--CHHHHHHHHHHHHHHHHHhCCCCCC---CCceEEEcCchHHHHHHH
Confidence 455677777766666666666554432 12 5555555666788888888764210 012689999999999988
Q ss_pred HHHHHHHHHHHhcccCCCCeEEEeCCC--CchHHHHHHHHcCCCCCCEEEEec-CCCCCcccCHHHHHHHHHHhHhcCCc
Q 010125 174 LTAARDRVLNKIGRENISKLIVYGSDQ--THCALQKAAQIVGIDVKNFRAIKT-TKSSSYGLSPDSLMAQINSDVEVGLI 250 (517)
Q Consensus 174 l~~ar~~~~~~~g~~~~~~~~v~~s~~--~H~s~~kaa~~~G~g~~~v~~vp~-d~~~~~~~d~~~Le~~i~~~~~~g~~ 250 (517)
+.+.... + .+++.|++.+. .|.++.++++..|+ +++.+|+ +. ++.+|+++|+++|++. .
T Consensus 76 ~~~~~~~------~--~~gd~vlv~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~--~~~~d~~~l~~~l~~~-----~ 137 (385)
T 2bkw_A 76 ASNFILS------K--APNKNVLVVSTGTFSDRFADCLRSYGA---QVDVVRPLKI--GESVPLELITEKLSQN-----S 137 (385)
T ss_dssp HHHHSCT------T--CSCCEEEEECSSHHHHHHHHHHHHTTC---EEEEECCSST--TSCCCHHHHHHHHHHS-----C
T ss_pred HHHHhcc------C--CCCCeEEEEcCCcchHHHHHHHHHcCC---ceEEEecCCC--CCCCCHHHHHHHHhcC-----C
Confidence 8766310 0 03444544433 34455578888899 9999998 64 5789999999999761 1
Q ss_pred ceEEEeeccCCccccccChhHHHHHHHHh--CCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceE
Q 010125 251 PLFLCATIGTTAITAVDPLKPLCDVAKQF--GIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCC 328 (517)
Q Consensus 251 p~~vv~t~gtt~~G~idpl~eI~~i~~~~--gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~ 328 (517)
+.+|+++.++|++|.+.|+++|+++|++| |+|+|+|++|+.+....+ . ... ++|++++++|||+++|.|+|+
T Consensus 138 ~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~~-~----~~~-~~d~~~~s~~K~~~~~~G~G~ 211 (385)
T 2bkw_A 138 YGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFE-F----DEW-GVDFALTASQKAIGAPAGLSI 211 (385)
T ss_dssp CSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCC-T----TTT-TCSEEEEESSSTTCCCSCEEE
T ss_pred CCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCcccc-c----ccc-CceEEEecCccccccCCcceE
Confidence 23788899999999999999999999999 999999999976543221 1 111 589999999999998889999
Q ss_pred EEEeCchhHHhhhc-----CCccccCCccccccccccCCC--ccccCCCC-CCchHHHHHHHHhcHHHHHHHHHHHHHHH
Q 010125 329 LWVKDPRALVSSLS-----TNPEYLKNKATESMQVVDYKD--WQITLSRR-FRSLKLWFVIRNYGVANLRHFLRSHVNMA 400 (517)
Q Consensus 329 l~~~~~~~~~~~~~-----~~~~yl~~~~~~~~~~~~~~~--~~~~~sr~-~~al~~~~~l~~~g~~g~~~~i~~~~~~a 400 (517)
++++++. +.+.+. ....|......-......+.. .....+.. .....+..+++.+...+++++.++..+++
T Consensus 212 ~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~ 290 (385)
T 2bkw_A 212 SLCSSRF-MDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMS 290 (385)
T ss_dssp EEECHHH-HHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred EEEcHHH-HHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 9986543 220221 011111100000000000000 00000111 11134445565554556888899999999
Q ss_pred HHHHHHH-hcCCCeEEecC-C----CeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEee
Q 010125 401 KLFERLV-SGDKRFEIVFP-C----HFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTH 474 (517)
Q Consensus 401 ~~l~~~l-~~~~~~~l~~~-~----~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ 474 (517)
+++.+.| +++ +++++.+ + ..++++|++.. ..++.++|.++|+....+
T Consensus 291 ~~l~~~L~~~~-g~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~l~~~gi~v~~g 343 (385)
T 2bkw_A 291 DWFKDSLVNGL-QLTSVSRYPSNMSAHGLTAVYVAD--------------------------PPDVIAFLKSHGVVIAGG 343 (385)
T ss_dssp HHHHHHHHTTT-CCEESSCSSSTTBCSSCEEEECSC--------------------------HHHHHHHHHHTTEECBCC
T ss_pred HHHHHHHHHhc-CceecccCcccccCCceEEEecCC--------------------------HHHHHHHHHHCCeEEeCC
Confidence 9999999 887 8888642 1 35677777631 245666776777644322
Q ss_pred eeE-CCEeEEEEE-ec-C-CCCcHHHHHHHHHHHHHHHHH
Q 010125 475 AVL-GGIYAIRFA-TG-A-TLTEKRHVVVAWTVVQQHLEA 510 (517)
Q Consensus 475 ~~~-~g~~~lR~~-~~-~-~~t~~~di~~l~~~l~~~~~~ 510 (517)
... .+..++|++ +. + +.++++|++++++.|+++.++
T Consensus 344 ~~~~~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~ 383 (385)
T 2bkw_A 344 IHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR 383 (385)
T ss_dssp CCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred CCcccCCCEEEEEccccccccCCHHHHHHHHHHHHHHHHh
Confidence 211 135689999 53 1 245778999999999887543
No 44
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.94 E-value=2e-25 Score=225.62 Aligned_cols=333 Identities=12% Similarity=0.087 Sum_probs=223.0
Q ss_pred cceeCCCCCChHHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHH
Q 010125 96 YFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLT 175 (517)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~ 175 (517)
||++...+ .++..+.+.+...+.. |..+.+...+++++.+|+++++|.+++ .+++|+|||+|+..++.
T Consensus 17 ~l~~~~~~-~~~~~v~~a~~~~~~~----~~~~~g~~~~~~~~~~~l~~~~g~~~~-------~v~~~~g~t~a~~~~~~ 84 (359)
T 1svv_A 17 SFVNDYSV-GMHPKILDLMARDNMT----QHAGYGQDSHCAKAARLIGELLERPDA-------DVHFISGGTQTNLIACS 84 (359)
T ss_dssp ECSCSCSS-CCCHHHHHHHHHHTTC----CCCSTTCSHHHHHHHHHHHHHHTCTTS-------EEEEESCHHHHHHHHHH
T ss_pred EecCCCcC-CCCHHHHHHHHHHHhh----ccccccccHHHHHHHHHHHHHhCCCCc-------cEEEeCCchHHHHHHHH
Confidence 45543333 3344555666665543 334445677888999999999997654 68999999999998888
Q ss_pred HHHHHHHHHhcccCCCCeEEEeCCCCchHHHH--HHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhH-hcCCcce
Q 010125 176 AARDRVLNKIGRENISKLIVYGSDQTHCALQK--AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDV-EVGLIPL 252 (517)
Q Consensus 176 ~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~k--aa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~-~~g~~p~ 252 (517)
++++ +++.|++++.+|.++.. .++..|+ +++.+|.+ ++.+|+++|++++++.. +.+..+.
T Consensus 85 ~~~~-----------~gd~vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~---~~~~d~~~l~~~l~~~~~~~~~~~~ 147 (359)
T 1svv_A 85 LALR-----------PWEAVIATQLGHISTHETGAIEATGH---KVVTAPCP---DGKLRVADIESALHENRSEHMVIPK 147 (359)
T ss_dssp HHCC-----------TTEEEEEETTSHHHHSSTTHHHHTTC---CEEEECCT---TSCCCHHHHHHHHHHSCSTTSCEEE
T ss_pred HHhC-----------CCCEEEEcccchHHHHHHHHHhcCCC---eeEEEeCC---CCeecHHHHHHHHHHHHhccCCCce
Confidence 7643 56678999999999988 4788899 99999985 47899999999998651 2233456
Q ss_pred EEEeeccCCccccccC---hhHHHHHHHHhCCeEEcccccccccccCccccccccCC-CCCCeeeeccccccCCCCcceE
Q 010125 253 FLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGV-EGADSFSLNAHKWFFATLDCCC 328 (517)
Q Consensus 253 ~vv~t~gtt~~G~idp---l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~-~~aDsi~~~~hK~l~~p~~~g~ 328 (517)
+|+++.+ +++|.+.| +++|+++|++||+|+|+|++|.++.+.........-++ ..+|++++++||++ .|.++|+
T Consensus 148 ~v~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~g-~~~~~g~ 225 (359)
T 1svv_A 148 LVYISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAG-GMFGEAL 225 (359)
T ss_dssp EEEEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTT-CSSCEEE
T ss_pred EEEEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccCC-CCCceEE
Confidence 7878877 68999988 99999999999999999999954422111111000001 26899999999985 5788898
Q ss_pred EEEeCchhHHhhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHh
Q 010125 329 LWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVS 408 (517)
Q Consensus 329 l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~ 408 (517)
+++++.. . +.+. .+..... .....+. ..... ....+..++++++.++..++++++.+.|
T Consensus 226 l~~~~~~-~-~~~~---~~~~~~~-----------~~~~~~~--~~~~~--~~~~l~~~~~~~~~~~~~~~~~~l~~~L- 284 (359)
T 1svv_A 226 IILNDAL-K-PNAR---HLIKQRG-----------ALMAKGW--LLGIQ--FEVLMKDNLFFELGAHSNKMAAILKAGL- 284 (359)
T ss_dssp EECSGGG-C-TTHH---HHHHHTT-----------CCCTTTH--HHHHH--HHHHTSTTHHHHHHHHHHHHHHHHHHHH-
T ss_pred EEEcccH-H-HHHH---HHHhcCC-----------cccccch--hhHHH--HHHHHhhhhHHHHHHHHHHHHHHHHHHh-
Confidence 8885432 1 1111 0000000 0000000 01111 1223445677888899999999999999
Q ss_pred cCCCeEEecCCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhc-CcEEEeeeeECCEeEEEEEe
Q 010125 409 GDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINAS-GKAYMTHAVLGGIYAIRFAT 487 (517)
Q Consensus 409 ~~~~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~g~~~lR~~~ 487 (517)
+.++++++.+...+++++.+. .++.++|.++ |+.... ....+..++|+++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~l~~~~gi~v~~-~~~~~~~~iRi~~ 335 (359)
T 1svv_A 285 EACGIRLAWPSASNQLFPILE----------------------------NTMIAELNNDFDMYTVE-PLKDGTCIMRLCT 335 (359)
T ss_dssp HHTTCCBSSCCSSSEECBEEE----------------------------HHHHHHHTTTEECEEEE-EETTTEEEEEEEC
T ss_pred ccCCeEEccCCccceEEEEcC----------------------------HHHHHHHHHhcCEEEEe-cccCCCceEEEEc
Confidence 567888765555555544331 2466777777 876522 1123578999997
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHH
Q 010125 488 GATLTEKRHVVVAWTVVQQHLEA 510 (517)
Q Consensus 488 ~~~~t~~~di~~l~~~l~~~~~~ 510 (517)
+..++++|+++++++|+++.++
T Consensus 336 -~~~~~~~~i~~~~~~l~~~~~~ 357 (359)
T 1svv_A 336 -SWATEEKECHRFVEVLKRLVAS 357 (359)
T ss_dssp -CTTCCHHHHHHHHHHHHHC---
T ss_pred -cCcCCHHHHHHHHHHHHHHHhc
Confidence 5667889999999999887654
No 45
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.94 E-value=1.1e-25 Score=231.93 Aligned_cols=343 Identities=12% Similarity=0.048 Sum_probs=224.4
Q ss_pred CccceeCCCCCChHHHHHHHHHhcccc----cccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHH
Q 010125 94 PNYFAYFPSSGSIAGFLGEMLSSGFNI----VGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEA 169 (517)
Q Consensus 94 p~~~~~~~~~~~~~~~~~~~l~~~~n~----~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a 169 (517)
..|+++...++.++.+ .+.+...+.. ....|..++.......++.+++++++|.+++ .+++|+|+|++
T Consensus 27 ~~~ld~~~~~~~~~~v-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-------~v~~~~g~t~a 98 (406)
T 3cai_A 27 WVHFDAPAGMLIPDSV-ATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPG-------GVVLGADRAVL 98 (406)
T ss_dssp CEECBGGGCCCCCHHH-HHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGG-------GEEEESCHHHH
T ss_pred eEEEeCCCcCCCCHHH-HHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCC-------eEEEeCChHHH
Confidence 3577776555444444 3444433321 1123433444566777889999999998754 68999999998
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHH----cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhH
Q 010125 170 ILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQI----VGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDV 245 (517)
Q Consensus 170 ~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~----~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~ 245 (517)
+..++.+.... . .+++.|+++..+|.++..++.. .|+ +++.+|+++ .++.+|+++|+++|++++
T Consensus 99 l~~~~~~l~~~------~--~~gd~vi~~~~~~~~~~~~~~~~~~~~g~---~v~~v~~~~-~~~~~d~~~l~~~l~~~~ 166 (406)
T 3cai_A 99 LSLLAEASSSR------A--GLGYEVIVSRLDDEANIAPWLRAAHRYGA---KVKWAEVDI-ETGELPTWQWESLISKST 166 (406)
T ss_dssp HHHHHHHTGGG------G--BTTCEEEEETTSCGGGTHHHHHHHHHHBC---EEEEECCCT-TTCCCCGGGHHHHCCTTE
T ss_pred HHHHHHHHhhc------c--CCCCEEEEcCCccHHHHHHHHHHHHhcCC---eEEEEecCc-ccCCcCHHHHHHHhCCCc
Confidence 87666543100 0 1456788888999887665544 688 999999873 257899999999986543
Q ss_pred hcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCc
Q 010125 246 EVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLD 325 (517)
Q Consensus 246 ~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~ 325 (517)
.+|+++.++|++|.+.|+++|.++|++||+++|+|+||+.+....+ .... ++|++++++||+++ |.
T Consensus 167 ------~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~-~~~~-----~~d~~~~s~~K~~g-~~- 232 (406)
T 3cai_A 167 ------RLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLLD-IRET-----DADVVTVNAHAWGG-PP- 232 (406)
T ss_dssp ------EEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTCCCC-HHHH-----CCSEEEEEGGGGTS-CS-
T ss_pred ------eEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCCC-chhc-----CCCEEEeehhhhcC-CC-
Confidence 4888899999999999999999999999999999999986544332 1111 58999999999875 65
Q ss_pred ce-EEEEeCchhHHhhhcCCccccCCccccccccccCCCcccc-CCCCCCc-hHHHHHHHHhcHH--------------H
Q 010125 326 CC-CLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQIT-LSRRFRS-LKLWFVIRNYGVA--------------N 388 (517)
Q Consensus 326 ~g-~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~-~sr~~~a-l~~~~~l~~~g~~--------------g 388 (517)
+| ++++++. .. +.+.....+.... . ...+. ++....+ ..+..+++.+... .
T Consensus 233 ~G~~~~~~~~-~~-~~l~~~~~~~~~~-----~-----~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~ 300 (406)
T 3cai_A 233 IGAMVFRDPS-VM-NSFGSVSTNPYAT-----G-----PARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVS 300 (406)
T ss_dssp CEEEEESCHH-HH-HTSCCCCSCTTCC-----G-----GGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHH
T ss_pred cCeEEEEehH-HH-hhcCCcccCCCCC-----c-----cccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhh
Confidence 88 7777543 22 2222111011000 0 00011 1111111 1233344433221 4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEecCC--CeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHh
Q 010125 389 LRHFLRSHVNMAKLFERLVSGDKRFEIVFPC--HFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINA 466 (517)
Q Consensus 389 ~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~--~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 466 (517)
++++.++..++++++.+.|+++|+++++.+. ..++++|++.... ..++.+.|.+
T Consensus 301 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~L~~ 356 (406)
T 3cai_A 301 MQSADAYLNRVFDYLMVSLRSLPLVMLIGRPEAQIPVVSFAVHKVP------------------------ADRVVQRLAD 356 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTEEECCCCSSBCSEEEEEETTBC------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEcCCccccCCEEEEEECCcC------------------------HHHHHHHHHH
Confidence 7788889999999999999998899886542 3567888775320 2456666767
Q ss_pred cCcEEEeee------eE---CCEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 010125 467 SGKAYMTHA------VL---GGIYAIRFATGATLTEKRHVVVAWTVVQQH 507 (517)
Q Consensus 467 ~g~~~~~~~------~~---~g~~~lR~~~~~~~t~~~di~~l~~~l~~~ 507 (517)
.|+....+. .+ .+..++|+++. ..++++|++++++.|+++
T Consensus 357 ~gi~v~~g~~~~~~~~~g~~~~~~~iRis~~-~~~t~e~i~~~~~~l~~~ 405 (406)
T 3cai_A 357 NGILAIANTGSRVLDVLGVNDVGGAVTVGLA-HYSTMAEVDQLVRALASL 405 (406)
T ss_dssp TTEECEECCSCHHHHHHTTTTTTCCEEEECC-TTCCHHHHHHHHHHHHTC
T ss_pred CCcEEecCChHHHHHHcCCCCCCCeEEEEee-cCCCHHHHHHHHHHHHHh
Confidence 776543322 01 12468999984 567888999999998753
No 46
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.94 E-value=6.9e-26 Score=228.90 Aligned_cols=303 Identities=14% Similarity=0.102 Sum_probs=207.5
Q ss_pred hHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHH--
Q 010125 131 ATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKA-- 208 (517)
Q Consensus 131 ~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~ka-- 208 (517)
...++.++.+|+++++| ++. .+++|+|||+|+..++.++++ +++.|+++..+|++...+
T Consensus 41 ~~~~~~~l~~~la~~~g-~~~-------~v~~~~~gt~a~~~al~~~~~-----------~gd~vi~~~~~~~~~~~~~~ 101 (356)
T 1v72_A 41 TDELTAQVKRKFCEIFE-RDV-------EVFLVPTGTAANALCLSAMTP-----------PWGNIYCHPASHINNDECGA 101 (356)
T ss_dssp CSHHHHHHHHHHHHHHT-SCC-------EEEEESCHHHHHHHHHHTSCC-----------TTEEEEECTTSHHHHSSTTH
T ss_pred cchHHHHHHHHHHHHhC-CCC-------cEEEeCCccHHHHHHHHHhcC-----------CCCEEEEcCccchhhhhchH
Confidence 34567788899999998 432 479999999999888876542 567788999999998876
Q ss_pred HHHc--CCCCCCEEEEecCCCCCcccCHHHHHH-HHHHhH-hcCCcceEEEeeccCCcccc---ccChhHHHHHHHHhCC
Q 010125 209 AQIV--GIDVKNFRAIKTTKSSSYGLSPDSLMA-QINSDV-EVGLIPLFLCATIGTTAITA---VDPLKPLCDVAKQFGI 281 (517)
Q Consensus 209 a~~~--G~g~~~v~~vp~d~~~~~~~d~~~Le~-~i~~~~-~~g~~p~~vv~t~gtt~~G~---idpl~eI~~i~~~~gi 281 (517)
+..+ |+ +++.+|.+ ++.+|+++|++ ++++.. ..+..+.+|+++.++ ++|. .+++++|+++|++||+
T Consensus 102 ~~~~~~g~---~~~~v~~~---~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~-~tG~~~~~~~l~~i~~~~~~~~~ 174 (356)
T 1v72_A 102 PEFFSNGA---KLMTVDGP---AAKLDIVRLRERTREKVGDVHTTQPACVSITQAT-EVGSIYTLDEIEAIGDVCKSSSL 174 (356)
T ss_dssp HHHHTTSC---EEEECCCG---GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSC-TTSCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCc---EEEEecCC---CCeEcHHHHHHHhhhcchhhccCCceEEEEEcCC-CCCccCCHHHHHHHHHHHHHcCC
Confidence 7777 88 89999875 46899999999 886521 122245678888766 4999 6789999999999999
Q ss_pred eEEcccccccccccCccccccccCC-CCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCccccCCcccccccccc
Q 010125 282 WVHVDAAYAGSACICPEFRHFIDGV-EGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVD 360 (517)
Q Consensus 282 ~lhvDaA~g~~~~~~~~~~~~~~g~-~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~ 360 (517)
|+|+|++|+.+............++ ..+|++++++||+ +.|.|+|+++.+ ++... .+. ++.... +
T Consensus 175 ~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-g~~~G~g~~~~~-~~~~~-~~~----~~~~~~----~--- 240 (356)
T 1v72_A 175 GLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN-GVLAAEAIVLFN-TSLAT-EMS----YRRKRA----G--- 240 (356)
T ss_dssp EEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG-TCSSCEEEEESS-GGGHH-HHH----HHHHHT----T---
T ss_pred eEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccC-CCcCccEEEEEC-HHHHh-hHH----HHhhcc----C---
Confidence 9999999975432111111111111 2689999999999 668887888774 33322 111 110000 0
Q ss_pred CCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCeeEEEEEecCCCcchhhhhh
Q 010125 361 YKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKT 440 (517)
Q Consensus 361 ~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~~~~v~f~~~~~~~~~~~~~~ 440 (517)
.+ ..........+++.+..+.+.++.++..++++++.+.|++++++++..++..+++++++.
T Consensus 241 ----~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~----------- 302 (356)
T 1v72_A 241 ----HL---SSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLD----------- 302 (356)
T ss_dssp ----CC---CSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEEC-----------
T ss_pred ----ch---hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCcEEccCCCccEEEEEcC-----------
Confidence 00 000112333344555445567778888999999999999888999876666666666552
Q ss_pred hhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 010125 441 KYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHLEAF 511 (517)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l 511 (517)
.++.++|.++|+.+.++. +. ..++|+++ +..++++++++++++|+++.++.
T Consensus 303 -----------------~~~~~~l~~~gi~v~~g~-~~-~~~iRi~~-~~~~~~~~i~~~~~~l~~~l~~~ 353 (356)
T 1v72_A 303 -----------------SAMIDALLKAGFGFYHDR-WG-PNVVRFVT-SFATTAEDVDHLLNQVRLAADRT 353 (356)
T ss_dssp -----------------HHHHHHHHHTTCBCBCSS-SS-TTEEEEEC-CTTCCHHHHHHHHHHHHHTC---
T ss_pred -----------------HHHHHHHHhcCeEEeccc-cC-CCeEEEEe-cCCCCHHHHHHHHHHHHHHHHhh
Confidence 145666667787554322 32 46899997 56778899999999998876554
No 47
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.94 E-value=1.9e-25 Score=230.46 Aligned_cols=330 Identities=10% Similarity=0.044 Sum_probs=224.8
Q ss_pred HHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcc
Q 010125 108 GFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGR 187 (517)
Q Consensus 108 ~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~ 187 (517)
..+.+.+...+......|...++..++++.+.+|+.+.+|++... ..+++|+|||+|+..++.++..
T Consensus 57 ~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~-----~~v~~t~g~~~al~~~~~~l~~-------- 123 (406)
T 1xi9_A 57 EHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITP-----DDVRVTAAVTEALQLIFGALLD-------- 123 (406)
T ss_dssp HHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCG-----GGEEEESHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCH-----HHEEEcCChHHHHHHHHHHhCC--------
Confidence 344555554443333356555667899999999999988865331 2789999999999888876522
Q ss_pred cCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcccccc
Q 010125 188 ENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVD 267 (517)
Q Consensus 188 ~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~id 267 (517)
+++.|++++++|.++..+++..|+ +++.+|+++++++.+|+++|+++++++ +.+|+++.++|++|.+-
T Consensus 124 ---~gd~Vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~i~~p~nptG~~~ 191 (406)
T 1xi9_A 124 ---PGDEILVPGPSYPPYTGLVKFYGG---KPVEYRTIEEEDWQPDIDDIRKKITDR------TKAIAVINPNNPTGALY 191 (406)
T ss_dssp ---TTCEEEEEESCCHHHHHHHHHTTC---EEEEEEEEGGGTSEECHHHHHHHCCTT------EEEEEEESSCTTTCCCC
T ss_pred ---CCCEEEEcCCCCccHHHHHHHcCC---EEEEeecCCCcCCcCCHHHHHHhhCcC------ceEEEEECCCCCCCCCc
Confidence 456788889999999999999999 999999875335789999999998753 33677788999999986
Q ss_pred C---hhHHHHHHHHhCCeEEcccccccccccCccccccccCC-CCC-CeeeeccccccCC-CCcceEEEE-eCc----hh
Q 010125 268 P---LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGV-EGA-DSFSLNAHKWFFA-TLDCCCLWV-KDP----RA 336 (517)
Q Consensus 268 p---l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~-~~a-Dsi~~~~hK~l~~-p~~~g~l~~-~~~----~~ 336 (517)
| +++|+++|++||+|+|+|++|+++.. ...... +..+ ... |.++.++||+++. ...+|++++ .++ ..
T Consensus 192 ~~~~l~~i~~~a~~~~~~li~De~~~~~~~-~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~l 269 (406)
T 1xi9_A 192 DKKTLEEILNIAGEYEIPVISDEIYDLMTY-EGEHIS-PGSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEV 269 (406)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEECTTTTCBS-SSCCCC-HHHHCSSSCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHH
T ss_pred CHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCC-HHHcCCCceEEEEeccccccCCCccEEEEEEEecCchhHHHH
Confidence 5 99999999999999999999988654 211111 1111 245 6788899999973 345898883 233 32
Q ss_pred HHhhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 010125 337 LVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNY--GVANLRHFLRSHVNMAKLFERLVSGDKRFE 414 (517)
Q Consensus 337 ~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~--g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~ 414 (517)
.+.+.....+. + + ...+..+++...+ +.++++++.++..++++++.+.|++.|+++
T Consensus 270 -~~~l~~~~~~~---------------~----~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 327 (406)
T 1xi9_A 270 -REAIDRLARIR---------------L----C--PNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEIPGIS 327 (406)
T ss_dssp -HHHHHHHHHHT---------------C----C--SCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTSTTEE
T ss_pred -HHHHHHHHHhh---------------c----C--CCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Confidence 22221110000 0 0 1222333333333 455678888999999999999999988888
Q ss_pred EecCCCeeEEEE-EecCC-CcchhhhhhhhhccccchHHHHHHHHHHHHHHHH-hcCcEEEeeeeEC--CEeEEEEEecC
Q 010125 415 IVFPCHFAVVCF-RVSPS-PVLMDKLKTKYVNCLLSEEEQINEFNRELLESIN-ASGKAYMTHAVLG--GIYAIRFATGA 489 (517)
Q Consensus 415 l~~~~~~~~v~f-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--g~~~lR~~~~~ 489 (517)
+. .+..++++| .+... + ....++.+.|. +.|+.+.++..+. +..++|+++.
T Consensus 328 ~~-~~~~~~~~~~~~~~~~~----------------------~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~- 383 (406)
T 1xi9_A 328 TT-KPQGAFYIFPKIEVGPW----------------------KNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL- 383 (406)
T ss_dssp CC-CCCBSSEECCEECSCSC----------------------SSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC-
T ss_pred ee-cCCeeEEEEEecCccCC----------------------CCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEec-
Confidence 75 444455544 44320 0 01245666665 6786554443332 2568999984
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHH
Q 010125 490 TLTEKRHVVVAWTVVQQHLEAFQ 512 (517)
Q Consensus 490 ~~t~~~di~~l~~~l~~~~~~l~ 512 (517)
+++++|+++++.|.++.+++.
T Consensus 384 --~~~~~i~~~~~~l~~~l~~~~ 404 (406)
T 1xi9_A 384 --PPIEILEEAMDRFEKFMKERL 404 (406)
T ss_dssp --SCHHHHHHHHHHHHHHHHHC-
T ss_pred --CCHHHHHHHHHHHHHHHHHHh
Confidence 678899999999999887654
No 48
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=99.94 E-value=2.4e-24 Score=223.94 Aligned_cols=301 Identities=14% Similarity=0.050 Sum_probs=208.7
Q ss_pred HHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHH
Q 010125 132 TELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQI 211 (517)
Q Consensus 132 ~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~ 211 (517)
.....++.+++++++|.+ ..+++++|++||..++.+... +++.|+++...|.++..+++.
T Consensus 108 ~~~~~~l~~~la~~~g~~---------~~i~~~sGs~a~~~al~~l~~-----------~gd~vl~~~~~h~~~~~~~~~ 167 (427)
T 2w8t_A 108 FHDHMEVEQALRDFYGTT---------GAIVFSTGYMANLGIISTLAG-----------KGEYVILDADSHASIYDGCQQ 167 (427)
T ss_dssp CHHHHHHHHHHHHHHTCS---------EEEEESCHHHHHHHHHHHHSC-----------TTCEEEEETTCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCC---------ceEEecCcHHHHHHHHHHhcC-----------CCCEEEECCcccHHHHHHHHH
Confidence 455666777888888875 347777888999887765421 556788899999999999999
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEccccccc
Q 010125 212 VGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAG 291 (517)
Q Consensus 212 ~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~ 291 (517)
.|. +++.+|. +|+++|+++|++... ..+.+|+++.+++++|.+.|+++|.++|++||+++++|++|++
T Consensus 168 ~g~---~~~~~~~-------~d~~~le~~l~~~~~--~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~ 235 (427)
T 2w8t_A 168 GNA---EIVRFRH-------NSVEDLDKRLGRLPK--EPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSM 235 (427)
T ss_dssp SCS---EEEEECT-------TCHHHHHHHHHTSCS--SSCEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTT
T ss_pred cCC---eeEEeCC-------CCHHHHHHHHHhccC--CCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccc
Confidence 998 8888763 589999999976321 1356888888899999999999999999999999999999988
Q ss_pred ccccCccccccc--cCC-CCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCC-ccccCCccccccccccCCCcccc
Q 010125 292 SACICPEFRHFI--DGV-EGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTN-PEYLKNKATESMQVVDYKDWQIT 367 (517)
Q Consensus 292 ~~~~~~~~~~~~--~g~-~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~-~~yl~~~~~~~~~~~~~~~~~~~ 367 (517)
+.+.. ...... .++ .++|+++.++||+++. .| |+++.++. .. +.+... ..|.. .
T Consensus 236 ~~~~~-~g~~~~~~~~~~~~~di~~~s~sK~~g~-~g-G~v~~~~~-l~-~~l~~~~~~~~~-----------------~ 293 (427)
T 2w8t_A 236 GFFGP-NGRGVYEAQGLEGQIDFVVGTFSKSVGT-VG-GFVVSNHP-KF-EAVRLACRPYIF-----------------T 293 (427)
T ss_dssp TTSST-TSCCHHHHTTCTTCCSEEEEESSSTTCS-CC-EEEEECCT-TG-GGGGGTCHHHHS-----------------S
T ss_pred cccCC-CCCchHhhcCCCcCCcEEEecchhhhcc-CC-CEEEeCHH-HH-HHHHHhcccccc-----------------c
Confidence 76531 111111 122 3679999999999984 34 77777543 22 222211 12211 1
Q ss_pred CCCC-CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-CeeEEEEEecCCCcchhhhhhhhhcc
Q 010125 368 LSRR-FRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPC-HFAVVCFRVSPSPVLMDKLKTKYVNC 445 (517)
Q Consensus 368 ~sr~-~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~-~~~~v~f~~~~~~~~~~~~~~~~~~~ 445 (517)
++.. .....+..+++.+. .++++.++..++++++.+.|++. ++++..++ ..+++++.+..
T Consensus 294 ~~~~~~~~aa~~~al~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~--------------- 355 (427)
T 2w8t_A 294 ASLPPSVVATATTSIRKLM--TAHEKRERLWSNARALHGGLKAM-GFRLGTETCDSAIVAVMLED--------------- 355 (427)
T ss_dssp CCCCHHHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHHHHHHHH-TCEESCSSCCSSEEEEEESS---------------
T ss_pred CCCCHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHc-CCcccCCCCCCCEEEEEECC---------------
Confidence 1111 11122234444432 24678888999999999999887 88876445 66777777642
Q ss_pred ccchHHHHHHHHHHHHHHHHhcCcEEEeeee---ECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHHh
Q 010125 446 LLSEEEQINEFNRELLESINASGKAYMTHAV---LGGIYAIRFATGATLTEKRHVVVAWTVVQQHLEAFQS 513 (517)
Q Consensus 446 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l~~ 513 (517)
.....++.+.|.++|+....... ..+..++|++++ ..++++|+++++++|+++.+++..
T Consensus 356 --------~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRi~~~-~~~t~e~i~~~~~~l~~~l~~~~~ 417 (427)
T 2w8t_A 356 --------QEQAAMMWQALLDGGLYVNMARPPATPAGTFLLRCSIC-AEHTPAQIQTVLGMFQAAGRAVGV 417 (427)
T ss_dssp --------HHHHHHHHHHHHHTTEECEEECTTTSCTTCEEEEEECC-TTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred --------HHHHHHHHHHHHHCCeEEeeeCCCCCCCCCeEEEEEeC-CCCCHHHHHHHHHHHHHHHHHhCc
Confidence 12345677888888865433221 124578999985 566888999999999999877653
No 49
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.94 E-value=2.3e-25 Score=230.19 Aligned_cols=328 Identities=13% Similarity=0.069 Sum_probs=228.2
Q ss_pred HHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcc
Q 010125 108 GFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGR 187 (517)
Q Consensus 108 ~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~ 187 (517)
..+.+.+ ..+......|...++..++++++.+|+.+.+|++... ..+++|+|||+|+..++.+...
T Consensus 59 ~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~-----~~v~~~~g~t~a~~~~~~~~~~-------- 124 (409)
T 2gb3_A 59 EVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKP-----ENVLVTNGGSEAILFSFAVIAN-------- 124 (409)
T ss_dssp THHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCG-----GGEEEESHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCH-----HHEEEeCCHHHHHHHHHHHhCC--------
Confidence 3455666 6665444456666678899999999999988865331 2689999999999988876532
Q ss_pred cCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcccccc
Q 010125 188 ENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVD 267 (517)
Q Consensus 188 ~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~id 267 (517)
+++.|++++++|.++..+++..|+ +++.+|+++++++.+ +++|+++++++ +.+|+++.+++++|.+-
T Consensus 125 ---~gd~Vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~-~~~l~~~l~~~------~~~v~~~~p~nptG~~~ 191 (409)
T 2gb3_A 125 ---PGDEILVLEPFYANYNAFAKIAGV---KLIPVTRRMEEGFAI-PQNLESFINER------TKGIVLSNPCNPTGVVY 191 (409)
T ss_dssp ---TTCEEEEEESCCTHHHHHHHHHTC---EEEEEECCGGGTSCC-CTTGGGGCCTT------EEEEEEESSCTTTCCCC
T ss_pred ---CCCEEEEcCCCchhHHHHHHHcCC---EEEEeccCCCCCCcc-HHHHHHhhCcC------CeEEEECCCCCCCCCCc
Confidence 456788889999999999999999 999999875334556 88888888653 34678888999999984
Q ss_pred ---ChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCC-CcceEEEEeCchhHHhhhcC
Q 010125 268 ---PLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCCLWVKDPRALVSSLST 343 (517)
Q Consensus 268 ---pl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p-~~~g~l~~~~~~~~~~~~~~ 343 (517)
++++|+++|++||+++|+|++|+++.... .....+.++...|+++.++||+++.| ..+|+++++++... +.+..
T Consensus 192 ~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~l~-~~l~~ 269 (409)
T 2gb3_A 192 GKDEMRYLVEIAERHGLFLIVDEVYSEIVFRG-EFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNEELI-SHAMK 269 (409)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-CCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCHHHH-HHHHH
T ss_pred CHHHHHHHHHHHHHcCCEEEEECcccccccCC-CCCCccccCCCCEEEEecchhccCCccceEEEEEECcHHHH-HHHHH
Confidence 58999999999999999999998765422 22222334446789999999999743 45899988763332 22211
Q ss_pred CccccCCccccccccccCCCccccCCCCCCchHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCe
Q 010125 344 NPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNY--GVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHF 421 (517)
Q Consensus 344 ~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~--g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~~ 421 (517)
...+ ++ ....+..+++...+ +.+.++++.++..++++++.+.|++. +++++..|..
T Consensus 270 ~~~~----------------~~-----~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~ 327 (409)
T 2gb3_A 270 LAQG----------------RL-----APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEH-GLKRFTKPSG 327 (409)
T ss_dssp HHHH----------------SC-----CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCBCCCSB
T ss_pred HHhc----------------cC-----CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHc-CceeeeCCCe
Confidence 0000 00 11223333333333 56778888899999999999999887 7876224444
Q ss_pred eEEEE-EecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhc------CcEEEeeeeE-----CCEeEEEEEecC
Q 010125 422 AVVCF-RVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINAS------GKAYMTHAVL-----GGIYAIRFATGA 489 (517)
Q Consensus 422 ~~v~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~------g~~~~~~~~~-----~g~~~lR~~~~~ 489 (517)
++++| ++... ...++.+.|.++ |+...++..+ .+..++|+++.
T Consensus 328 ~~~~~~~~~~~------------------------~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~- 382 (409)
T 2gb3_A 328 AFYITAELPVE------------------------DAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV- 382 (409)
T ss_dssp SSEEEEECSSS------------------------CHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC-
T ss_pred eEEEEEEeCCC------------------------CHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC-
Confidence 44444 44311 024566777665 7654433322 23578999985
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHh
Q 010125 490 TLTEKRHVVVAWTVVQQHLEAFQS 513 (517)
Q Consensus 490 ~~t~~~di~~l~~~l~~~~~~l~~ 513 (517)
++++++++++++|+++.+++.+
T Consensus 383 --~~~e~i~~~~~~l~~~l~~~~~ 404 (409)
T 2gb3_A 383 --LEKDLLSRAIDVLMEGLKMFCS 404 (409)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHC
T ss_pred --CCHHHHHHHHHHHHHHHHHhhh
Confidence 6888999999999999887654
No 50
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.94 E-value=8.6e-26 Score=229.68 Aligned_cols=300 Identities=14% Similarity=0.104 Sum_probs=209.4
Q ss_pred HHHHHHHHHH-HHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHH
Q 010125 132 TELENIVMDW-LGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQ 210 (517)
Q Consensus 132 ~~lE~~v~~~-l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~ 210 (517)
.....+++++ +++++|.+ .+++|+|||+|+..++.++.. +++.|++++.+|+++..+++
T Consensus 52 ~~~~~~l~~~~la~~~~~~---------~v~~~~g~t~a~~~~~~~~~~-----------~gd~vl~~~~~~~~~~~~~~ 111 (371)
T 2e7j_A 52 TPPIHDFIHNQLPKFLGCD---------VARVTNGAREAKFAVMHSLAK-----------KDAWVVMDENCHYSSYVAAE 111 (371)
T ss_dssp -CCHHHHHHTHHHHHTTSS---------EEEEESSHHHHHHHHHHHHCC-----------TTCEEEEETTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCC---------EEEEeCChHHHHHHHHHHHhC-----------CCCEEEEccCcchHHHHHHH
Confidence 4445667788 88888876 379999999999988877632 56678899999999999999
Q ss_pred HcCCCCCCEEEEe--cCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEcccc
Q 010125 211 IVGIDVKNFRAIK--TTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAA 288 (517)
Q Consensus 211 ~~G~g~~~v~~vp--~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA 288 (517)
..|+ +++.+| +++ ++.+|+++|++++++.... ..+.+|+++.++|++|.+.|+++|.++|++||+|+|+|++
T Consensus 112 ~~g~---~~~~v~~~~~~--~~~~d~~~l~~~l~~~~~~-~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a 185 (371)
T 2e7j_A 112 RAGL---NIALVPKTDYP--DYAITPENFAQTIEETKKR-GEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGA 185 (371)
T ss_dssp HTTC---EEEEECCCCTT--TCCCCHHHHHHHHHHHTTT-SCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECT
T ss_pred HcCC---eEEEeecccCC--CCCcCHHHHHHHHHhhccc-CCeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECc
Confidence 9999 999999 764 4799999999999854221 2356899999999999999999999999999999999999
Q ss_pred cccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhh-hcCC-ccccCCccccccccccCCCccc
Q 010125 289 YAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSS-LSTN-PEYLKNKATESMQVVDYKDWQI 366 (517)
Q Consensus 289 ~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~-~~~~-~~yl~~~~~~~~~~~~~~~~~~ 366 (517)
|+.+....+ .... ++|+++.++||+++.|.++|+++++++. . +. +... ..+... ..+
T Consensus 186 ~~~~~~~~~-~~~~-----~~di~~~s~sK~~~~~~~~G~~~~~~~~-~-~~~~~~~~~~~~~~-------------~~~ 244 (371)
T 2e7j_A 186 YAIGRMPVS-LKEI-----GADFIVGSGHKSMAASGPIGVMGMKEEW-A-EIVLRRSEKYKNKE-------------VEL 244 (371)
T ss_dssp TTBTTBCCC-HHHH-----TCSEEEEEHHHHSSCCSSCEEEEECTTT-T-TTTTCBCSSCTTSB-------------GGG
T ss_pred cccCCCCCC-hhhc-----CCCEEEecCCcCCCCCCCcEEEEEechh-h-hhhccccccCcccc-------------ccc
Confidence 988654321 1111 5789999999999999899999997652 1 11 2111 011100 000
Q ss_pred cC-CCCCC-chHHHHHHHHhcHHHHHHHHHHH--HHHHHHHHHHHhcCCCeEEecCC--CeeEEEEEecCCCcchhhhhh
Q 010125 367 TL-SRRFR-SLKLWFVIRNYGVANLRHFLRSH--VNMAKLFERLVSGDKRFEIVFPC--HFAVVCFRVSPSPVLMDKLKT 440 (517)
Q Consensus 367 ~~-sr~~~-al~~~~~l~~~g~~g~~~~i~~~--~~~a~~l~~~l~~~~~~~l~~~~--~~~~v~f~~~~~~~~~~~~~~ 440 (517)
.. +.... ...+..+++.+.. ++.++. .++++++.+.|++. +++++.++ ..++++|++. .
T Consensus 245 ~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~-~--------- 309 (371)
T 2e7j_A 245 LGCTARGATIITLMASFPHVRE----RIKRWDEEVEKARRFAAEMEKL-GIKQLGDNPHNHDLMFFHAE-V--------- 309 (371)
T ss_dssp TTCCCCSHHHHHHHHHHHHHHH----HGGGHHHHHHHHHHHHHHHHHT-TCEEESSSSCCSSEEEEECH-H---------
T ss_pred ccCCcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHc-CcEEecCCCccCceEEEECC-C---------
Confidence 01 11111 1223334443322 556677 78999999999988 89887543 4667777653 1
Q ss_pred hhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeE-C---C--EeEEE-EEecCCCCcHHHHHHHHHHHHHHHHH
Q 010125 441 KYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVL-G---G--IYAIR-FATGATLTEKRHVVVAWTVVQQHLEA 510 (517)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-~---g--~~~lR-~~~~~~~t~~~di~~l~~~l~~~~~~ 510 (517)
..++.+.|.+.|+.... ... . | ..++| +++....++++++++++++|+++.++
T Consensus 310 ----------------~~~~~~~l~~~gi~~~~-~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~~ 369 (371)
T 2e7j_A 310 ----------------LYEISKKAKGGRFFLYR-ELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEK 369 (371)
T ss_dssp ----------------HHHHHHHSSSGGGHHHH-HHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHCCEEEEe-ccccccccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHHHh
Confidence 24556666666654322 110 0 2 46799 99853226888999999999888764
No 51
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=99.93 E-value=3.1e-25 Score=227.38 Aligned_cols=330 Identities=12% Similarity=0.043 Sum_probs=224.4
Q ss_pred HHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCc-eEEcCCchHHHHHHHHHHHHHHHHHh
Q 010125 107 AGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGG-GVIQGTTCEAILCTLTAARDRVLNKI 185 (517)
Q Consensus 107 ~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~-g~~t~ggt~a~~~al~~ar~~~~~~~ 185 (517)
+..+.+.+...++.....|....+..++++.+.+|+.+.+|.+... .. +++|+|||+|+..++.+..+
T Consensus 41 ~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~-----~~~v~~~~g~~~a~~~~~~~~~~------ 109 (389)
T 1gd9_A 41 PQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADP-----KTEIMVLLGANQAFLMGLSAFLK------ 109 (389)
T ss_dssp CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCT-----TTSEEEESSTTHHHHHHHTTTCC------
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCC-----CCeEEEcCChHHHHHHHHHHhCC------
Confidence 3445565655554333456655678899999999999998863221 26 89999999999887765522
Q ss_pred cccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcccc
Q 010125 186 GRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITA 265 (517)
Q Consensus 186 g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~ 265 (517)
+++.|++++++|.++..+++..|+ +++.+|+++++++.+|+++|+++++++ +.+|+++.++|++|.
T Consensus 110 -----~gd~vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~~~nptG~ 175 (389)
T 1gd9_A 110 -----DGEEVLIPTPAFVSYAPAVILAGG---KPVEVPTYEEDEFRLNVDELKKYVTDK------TRALIINSPCNPTGA 175 (389)
T ss_dssp -----TTCEEEEEESCCTTHHHHHHHHTC---EEEEEECCGGGTTCCCHHHHHHHCCTT------EEEEEEESSCTTTCC
T ss_pred -----CCCEEEEcCCCchhHHHHHHHCCC---EEEEeccCCccCCCCCHHHHHHhcCcC------ceEEEEECCCCCCCc
Confidence 456788888999999999999999 999999875334689999999998753 336777889999999
Q ss_pred cc---ChhHHHHHHHHhCCeEEcccccccccccCcccccc--ccCCCCCCeeeeccccccCCC-CcceEEEEeCchhHHh
Q 010125 266 VD---PLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHF--IDGVEGADSFSLNAHKWFFAT-LDCCCLWVKDPRALVS 339 (517)
Q Consensus 266 id---pl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~--~~g~~~aDsi~~~~hK~l~~p-~~~g~l~~~~~~~~~~ 339 (517)
+- ++++|+++|++||+++|+|++|+.+.......... +.+....|+++.++||+++.| ..+|++++++ .. .+
T Consensus 176 ~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~-~~-~~ 253 (389)
T 1gd9_A 176 VLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPS-WI-IE 253 (389)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECCH-HH-HH
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccceEEEEECH-HH-HH
Confidence 86 59999999999999999999998876432111111 122346789999999999743 5579988863 22 22
Q ss_pred hhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHh--cHH--HHHHHHHHHHHHHHHHHHHHhcCCCeEE
Q 010125 340 SLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNY--GVA--NLRHFLRSHVNMAKLFERLVSGDKRFEI 415 (517)
Q Consensus 340 ~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~--g~~--g~~~~i~~~~~~a~~l~~~l~~~~~~~l 415 (517)
.+.....+.. + ....+..+++...+ +.+ .++++.++..++++++.+.|++. ++++
T Consensus 254 ~l~~~~~~~~--------------~------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 312 (389)
T 1gd9_A 254 RMVKFQMYNA--------------T------CPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM-GLPT 312 (389)
T ss_dssp HHHHHHTTTT--------------C------SCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCC
T ss_pred HHHHHHhhhc--------------c------CCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc-CCee
Confidence 2211000000 0 01223333333333 334 67888888999999999999987 7776
Q ss_pred ecCCCeeE-EEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHH-hcCcEEEeeeeEC--CEeEEEEEecCCC
Q 010125 416 VFPCHFAV-VCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESIN-ASGKAYMTHAVLG--GIYAIRFATGATL 491 (517)
Q Consensus 416 ~~~~~~~~-v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--g~~~lR~~~~~~~ 491 (517)
.. +..++ +++.+...+ ....++.+.|. +.|+.+.++..+. +..++|+++..
T Consensus 313 ~~-~~~~~~~~~~~~~~~----------------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~-- 367 (389)
T 1gd9_A 313 VK-PKGAFYIFPRIRDTG----------------------LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT-- 367 (389)
T ss_dssp CC-CCBTTEECCBCGGGT----------------------CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCS--
T ss_pred cC-CCeeeEEEEeccCCC----------------------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC--
Confidence 53 44343 444443210 01245677776 6786554433322 35689999853
Q ss_pred CcHHHHHHHHHHHHHHHHH
Q 010125 492 TEKRHVVVAWTVVQQHLEA 510 (517)
Q Consensus 492 t~~~di~~l~~~l~~~~~~ 510 (517)
++++++++++.|.++.++
T Consensus 368 -~~~~i~~~l~~l~~~~~~ 385 (389)
T 1gd9_A 368 -AYEKLEEAMDRMERVLKE 385 (389)
T ss_dssp -CHHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHh
Confidence 778999999999887654
No 52
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=99.93 E-value=6.5e-25 Score=224.79 Aligned_cols=329 Identities=12% Similarity=0.075 Sum_probs=223.4
Q ss_pred HHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhc
Q 010125 107 AGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIG 186 (517)
Q Consensus 107 ~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g 186 (517)
+..+.+.+...+......|.. ...++++++.+++++++|.+... ...++|+|||+|+..++.+...
T Consensus 47 ~~~v~~a~~~~~~~~~~~y~~--~~~~~~~~l~~~l~~~~g~~~~~-----~~v~~~~g~~~a~~~~~~~~~~------- 112 (391)
T 4dq6_A 47 APCIIDSLKNRLEQEIYGYTT--RPDSYNESIVNWLYRRHNWKIKS-----EWLIYSPGVIPAISLLINELTK------- 112 (391)
T ss_dssp CHHHHHHHHHHHTTCCCCCBC--CCHHHHHHHHHHHHHHHCCCCCG-----GGEEEESCHHHHHHHHHHHHSC-------
T ss_pred CHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHHHHHHhCCCCcH-----HHeEEcCChHHHHHHHHHHhCC-------
Confidence 344555666555544444443 35789999999999999943221 2689999999999888776532
Q ss_pred ccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecC--CCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccc
Q 010125 187 RENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTT--KSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAIT 264 (517)
Q Consensus 187 ~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d--~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G 264 (517)
+++.|++..++|.++..+++..|+ +++.+|++ .++++.+|+++|++++++ + .+|+++.+++++|
T Consensus 113 ----~gd~vl~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~------~~v~i~~p~nptG 178 (391)
T 4dq6_A 113 ----ANDKIMIQEPVYSPFNSVVKNNNR---ELIISPLQKLENGNYIMDYEDIENKIKD-V------KLFILCNPHNPVG 178 (391)
T ss_dssp ----TTCEEEECSSCCTHHHHHHHHTTC---EEEECCCEECTTSCEECCHHHHHHHCTT-E------EEEEEESSBTTTT
T ss_pred ----CCCEEEEcCCCCHHHHHHHHHcCC---eEEeeeeeecCCCceEeeHHHHHHHhhc-C------CEEEEECCCCCCC
Confidence 456788999999999999999999 99999987 445678999999999876 3 3788888999999
Q ss_pred cc---cChhHHHHHHHHhCCeEEcccccccccccCccccccccCC----CCCCeeeeccccccC-CCCcceEEEEeCchh
Q 010125 265 AV---DPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGV----EGADSFSLNAHKWFF-ATLDCCCLWVKDPRA 336 (517)
Q Consensus 265 ~i---dpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~----~~aDsi~~~~hK~l~-~p~~~g~l~~~~~~~ 336 (517)
.+ +++++|+++|++||+++|+|++|+.+.......... ..+ .....++.++||+++ .+..+|+++++++..
T Consensus 179 ~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~-~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~ 257 (391)
T 4dq6_A 179 RVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPM-ASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKD 257 (391)
T ss_dssp BCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCG-GGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHHH
T ss_pred cCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCH-HHcCccccCcEEEEEechhhccCcccceEEEEeCCHHH
Confidence 99 779999999999999999999998765432111111 111 123367889999996 556789888876443
Q ss_pred HHhhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEE
Q 010125 337 LVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSG-DKRFEI 415 (517)
Q Consensus 337 ~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~-~~~~~l 415 (517)
.. .+....... +...........+..+++. +.+.++++.++..++++++.+.|++ +|++++
T Consensus 258 ~~-~~~~~~~~~----------------~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 319 (391)
T 4dq6_A 258 YK-LLDDAFTRI----------------DIKRNNCFSLVATEASYNN-GESWLESFLEYLESNIDFAIKYINENMPKLKV 319 (391)
T ss_dssp HH-HHHHHHHHT----------------TCCCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEE
T ss_pred HH-HHHHHHHhh----------------cCCCCCHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEe
Confidence 22 221100000 0000000111222333332 4456788888999999999999987 789988
Q ss_pred ecCCCeeEEE-EEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhc-CcEEEeeeeEC--CEeEEEEEecCCC
Q 010125 416 VFPCHFAVVC-FRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINAS-GKAYMTHAVLG--GIYAIRFATGATL 491 (517)
Q Consensus 416 ~~~~~~~~v~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~--g~~~lR~~~~~~~ 491 (517)
.. +..+++. +.+.... ....++.++|.++ |+...++..+. +..++|++++
T Consensus 320 ~~-~~~~~~~~~~~~~~~----------------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--- 373 (391)
T 4dq6_A 320 RK-PEGTYLLWVDFSALG----------------------LSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLA--- 373 (391)
T ss_dssp CC-CSBSSEEEEECGGGC----------------------CCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECC---
T ss_pred cC-CCccEEEEEEhhhcC----------------------CCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEc---
Confidence 64 4444444 5554211 0134677777777 76544433332 3478999985
Q ss_pred CcHHHHHHHHHHHHHHH
Q 010125 492 TEKRHVVVAWTVVQQHL 508 (517)
Q Consensus 492 t~~~di~~l~~~l~~~~ 508 (517)
++++++++++++|.++.
T Consensus 374 ~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 374 CPRSMLEEALIRIKNAI 390 (391)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 47789999999998764
No 53
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=99.93 E-value=1.3e-24 Score=223.52 Aligned_cols=334 Identities=10% Similarity=0.016 Sum_probs=225.8
Q ss_pred HHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhc
Q 010125 107 AGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIG 186 (517)
Q Consensus 107 ~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g 186 (517)
+..+.+.+...+......|... ..++++.+.+|+.+.+|++... ...++|+|||+|+..++.+..+
T Consensus 46 ~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~-----~~v~~t~g~~~a~~~~~~~l~~------- 111 (399)
T 1c7n_A 46 PPELIEGLKKYLDETVLGYTGP--TEEYKKTVKKWMKDRHQWDIQT-----DWIINTAGVVPAVFNAVREFTK------- 111 (399)
T ss_dssp CHHHHHHHHHHHHHCCCSSBCC--CHHHHHHHHHHHHHHHCCCCCG-----GGEEEESSHHHHHHHHHHHHCC-------
T ss_pred CHHHHHHHHHHHhcCCCCCCCC--cHHHHHHHHHHHHHHhCCCCCh-----hhEEEcCCHHHHHHHHHHHhcC-------
Confidence 3455555555553333445443 7889999999999988853221 2689999999999888776532
Q ss_pred ccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecC-CCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcccc
Q 010125 187 RENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTT-KSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITA 265 (517)
Q Consensus 187 ~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d-~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~ 265 (517)
+++.|++..++|.++..+++..|. +++.+|++ .++++.+|+++|++++++. .+.+|+++.+++++|.
T Consensus 112 ----~gd~vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~g~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~ 179 (399)
T 1c7n_A 112 ----PGDGVIIITPVYYPFFMAIKNQER---KIIECELLEKDGYYTIDFQKLEKLSKDK-----NNKALLFCSPHNPVGR 179 (399)
T ss_dssp ----TTCEEEECSSCCTHHHHHHHTTTC---EEEECCCEEETTEEECCHHHHHHHHTCT-----TEEEEEEESSBTTTTB
T ss_pred ----CCCEEEEcCCCcHhHHHHHHHcCC---EEEecccccCCCCEEEcHHHHHHHhccC-----CCcEEEEcCCCCCCCc
Confidence 456788899999999999999998 99999985 3234679999999999732 1346777889999999
Q ss_pred ccC---hhHHHHHHHHhCCeEEcccccccccccCccccccccCC----CCCCeeeeccccccC-CCCcceEEEEeCchhH
Q 010125 266 VDP---LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGV----EGADSFSLNAHKWFF-ATLDCCCLWVKDPRAL 337 (517)
Q Consensus 266 idp---l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~----~~aDsi~~~~hK~l~-~p~~~g~l~~~~~~~~ 337 (517)
+.| +++|+++|++||+++|+|++|+++.......... ..+ ...+.+..++||+++ ....+|++++++++..
T Consensus 180 ~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~-~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~ 258 (399)
T 1c7n_A 180 VWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVF-QSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIR 258 (399)
T ss_dssp CCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCG-GGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccH-HHcCccccCcEEEEEeChhhccccchheEEEEECCHHHH
Confidence 988 9999999999999999999998765422111111 112 134567888999997 4456899998765433
Q ss_pred HhhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhc-CCCeE
Q 010125 338 VSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNY--GVANLRHFLRSHVNMAKLFERLVSG-DKRFE 414 (517)
Q Consensus 338 ~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~--g~~g~~~~i~~~~~~a~~l~~~l~~-~~~~~ 414 (517)
. .+....... +.. ....+..+++...+ +.+.++++.++..++++++.+.|++ +|+++
T Consensus 259 ~-~l~~~~~~~----------------~~~---~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 318 (399)
T 1c7n_A 259 E-RFTKSRDAT----------------SGM---PFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIK 318 (399)
T ss_dssp H-HHHHHHHHT----------------TCC---CCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSB
T ss_pred H-HHHHHHhhc----------------ccC---CCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhhCCCCe
Confidence 2 221100000 000 01223333333332 4567788888899999999999988 88887
Q ss_pred EecCCCeeEEE-EEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHH-hcCcEEEeeeeEC--CEeEEEEEecCC
Q 010125 415 IVFPCHFAVVC-FRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESIN-ASGKAYMTHAVLG--GIYAIRFATGAT 490 (517)
Q Consensus 415 l~~~~~~~~v~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--g~~~lR~~~~~~ 490 (517)
+. ++..+++. +.+...+ ....++.+.|. +.|+...++..+. +..++|+++..
T Consensus 319 ~~-~~~~~~~~~~~~~~~~----------------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~- 374 (399)
T 1c7n_A 319 AP-LIEGTYLQWIDFRALK----------------------MDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAA- 374 (399)
T ss_dssp CC-CCSBSSEEEEECGGGC----------------------CCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCS-
T ss_pred Ee-cCCceEEEEEEcccCC----------------------CCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEecc-
Confidence 65 45555554 5554210 01245677776 6787654443332 34689999864
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHh
Q 010125 491 LTEKRHVVVAWTVVQQHLEAFQS 513 (517)
Q Consensus 491 ~t~~~di~~l~~~l~~~~~~l~~ 513 (517)
.+++++++++.|.++.+++.+
T Consensus 375 --~~~~l~~~l~~l~~~l~~~~~ 395 (399)
T 1c7n_A 375 --PSSVIQESLERLNKALKDLKN 395 (399)
T ss_dssp --CHHHHHHHHHHHHHHHHHHC-
T ss_pred --CHHHHHHHHHHHHHHHHHHHh
Confidence 367999999999998877653
No 54
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=99.93 E-value=2.6e-25 Score=229.13 Aligned_cols=318 Identities=10% Similarity=0.066 Sum_probs=218.4
Q ss_pred ccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCch
Q 010125 124 NWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHC 203 (517)
Q Consensus 124 ~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~ 203 (517)
.|...++..++++++.+|+++.+|.+... ....++|+|||+|+..++.+... +++.|+++.++|.
T Consensus 73 ~y~~~~g~~~l~~~l~~~l~~~~g~~~~~----~~~i~~~~g~~~a~~~~~~~l~~-----------~gd~vl~~~~~~~ 137 (407)
T 3nra_A 73 AYTEYRGDLGIRDLLAPRLAAFTGAPVDA----RDGLIITPGTQGALFLAVAATVA-----------RGDKVAIVQPDYF 137 (407)
T ss_dssp HSCCTTCCHHHHHHHHHHHHHHHTSCCCT----TTSEEEESHHHHHHHHHHHTTCC-----------TTCEEEEEESCCT
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhCCCCCC----CCcEEEeCCcHHHHHHHHHHhCC-----------CCCEEEEcCCccc
Confidence 56666678899999999999999985210 02689999999999887765422 5567888999999
Q ss_pred HHHHHHHHcCCCCCCEEEEecCC----CCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccC---hhHHHHHH
Q 010125 204 ALQKAAQIVGIDVKNFRAIKTTK----SSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDP---LKPLCDVA 276 (517)
Q Consensus 204 s~~kaa~~~G~g~~~v~~vp~d~----~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idp---l~eI~~i~ 276 (517)
++..+++..|. +++.+|++. ++++.+|+++|++++++.+ .+|+++.+++++|.+-| +++|+++|
T Consensus 138 ~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~------~~v~~~~p~nptG~~~~~~~l~~i~~~~ 208 (407)
T 3nra_A 138 ANRKLVEFFEG---EMVPVQLDYVSADETRAGLDLTGLEEAFKAGA------RVFLFSNPNNPAGVVYSAEEIGQIAALA 208 (407)
T ss_dssp HHHHHHHHTTC---EEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTC------CEEEEESSCTTTCCCCCHHHHHHHHHHH
T ss_pred chHHHHHHcCC---EEEEeecccccccCcCCCcCHHHHHHHHhhCC------cEEEEcCCCCCCCcccCHHHHHHHHHHH
Confidence 99999999999 999999842 2367899999999998643 36778889999999988 99999999
Q ss_pred HHhCCeEEcccccccccccCcccccccc---CCCCCCeeeeccccccC-CCCcceEEEEeCchhHHhhhcCCccccCCcc
Q 010125 277 KQFGIWVHVDAAYAGSACICPEFRHFID---GVEGADSFSLNAHKWFF-ATLDCCCLWVKDPRALVSSLSTNPEYLKNKA 352 (517)
Q Consensus 277 ~~~gi~lhvDaA~g~~~~~~~~~~~~~~---g~~~aDsi~~~~hK~l~-~p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~ 352 (517)
++||+++|+|++|+++............ .....+.++.++||+++ .+.++|+++.+ +... +.+.....+.
T Consensus 209 ~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~-~~l~~~~~~~---- 282 (407)
T 3nra_A 209 ARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGS-RAII-ARMEKLQAIV---- 282 (407)
T ss_dssp HHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEEC-HHHH-HHHHHHHHHH----
T ss_pred HHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEcC-HHHH-HHHHHHHhhh----
Confidence 9999999999999876543221111111 11245578889999998 44678888774 3222 2221100000
Q ss_pred ccccccccCCCccccCCCCCCchHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCeeEEEEEecC
Q 010125 353 TESMQVVDYKDWQITLSRRFRSLKLWFVIRNY--GVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSP 430 (517)
Q Consensus 353 ~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~--g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~~~~v~f~~~~ 430 (517)
+. ....+..+++...+ +.+.+++++++..++++++.+.|+++|+++++.+....++.+.+..
T Consensus 283 ------------~~----~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~ 346 (407)
T 3nra_A 283 ------------SL----RAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPK 346 (407)
T ss_dssp ------------TS----SSCHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHHHHTSTTCBCCCCSBSSEECCBCCC
T ss_pred ------------cc----CCChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeEEEEEeCCC
Confidence 00 00122222233323 3356788888899999999999999888887644333444444432
Q ss_pred CCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHh-cCcEEEeeeeE--CCEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 010125 431 SPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINA-SGKAYMTHAVL--GGIYAIRFATGATLTEKRHVVVAWTVVQQH 507 (517)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~--~g~~~lR~~~~~~~t~~~di~~l~~~l~~~ 507 (517)
.. ....++.+.|.+ .|+...++..+ .+..++|++++. ++++|++++++|.++
T Consensus 347 ~~----------------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~---~~~~i~~~~~~l~~~ 401 (407)
T 3nra_A 347 LA----------------------VAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQ---DHEAAVAAARRIVTL 401 (407)
T ss_dssp BS----------------------SCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCS---CHHHHHHHHHHHHHH
T ss_pred CC----------------------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCC---CHHHHHHHHHHHHHH
Confidence 11 012455666654 47654443322 245789999853 788999999999998
Q ss_pred HHHHH
Q 010125 508 LEAFQ 512 (517)
Q Consensus 508 ~~~l~ 512 (517)
.+++.
T Consensus 402 ~~~~~ 406 (407)
T 3nra_A 402 VERYR 406 (407)
T ss_dssp HHHHB
T ss_pred HHHhh
Confidence 87653
No 55
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.93 E-value=1.8e-24 Score=223.60 Aligned_cols=312 Identities=14% Similarity=0.138 Sum_probs=207.7
Q ss_pred HHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHH--
Q 010125 133 ELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQ-- 210 (517)
Q Consensus 133 ~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~-- 210 (517)
....++.+++++++|.+++ .+++|+|||+++..++.+++..... +. .++.+|+++...|.++..++.
T Consensus 71 ~~~~~l~~~la~~~g~~~~-------~v~~~~g~t~al~~al~~~~~~~~~--~~--~gd~vii~~~~~~~~~~~~~~~~ 139 (416)
T 1qz9_A 71 DLSERLGNRLATLIGARDG-------EVVVTDTTSINLFKVLSAALRVQAT--RS--PERRVIVTETSNFPTDLYIAEGL 139 (416)
T ss_dssp GHHHHHHHHHHTTTTCCTT-------SEEECSCHHHHHHHHHHHHHHHHHH--HS--TTCCEEEEETTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcc-------cEEEeCChhHHHHHHHHhhcccccc--cC--CCCcEEEEcCCCCCchHHHHHHH
Confidence 4556788999999998654 6889999999887777766521100 00 023367788889998766543
Q ss_pred --Hc--CCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEcc
Q 010125 211 --IV--GIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVD 286 (517)
Q Consensus 211 --~~--G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvD 286 (517)
.. |+ +++.+|+ +++|+++|+++ +.+|+++.++|++|.+.|+++|+++|++||+|+|+|
T Consensus 140 ~~~~~~g~---~~~~v~~---------~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D 201 (416)
T 1qz9_A 140 ADMLQQGY---TLRLVDS---------PEELPQAIDQD------TAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWD 201 (416)
T ss_dssp HHHHCSSC---EEEEESS---------GGGHHHHCSTT------EEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEE
T ss_pred HHHhcCCc---eEEEeCc---------HHHHHHHhCCC------ceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEE
Confidence 34 87 8888874 56788887643 348999999999999999999999999999999999
Q ss_pred cccccccccCccccccccCCCCCCeeeeccccccCCCCcc-eEEEEeCchhHHhhhcC-CccccCCcc-ccccccccCC-
Q 010125 287 AAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDC-CCLWVKDPRALVSSLST-NPEYLKNKA-TESMQVVDYK- 362 (517)
Q Consensus 287 aA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~-g~l~~~~~~~~~~~~~~-~~~yl~~~~-~~~~~~~~~~- 362 (517)
+||+.+....+ ... . ++|++++++||+++.+.++ |+++++++.. +.+.. ...|..... .+....+.+.
T Consensus 202 ~a~~~g~~~~~-~~~----~-~~d~~~~s~~K~l~~g~~~~g~l~~~~~~~--~~l~~~~~g~~g~~~~~~~~~~~~~~~ 273 (416)
T 1qz9_A 202 LAHSAGAVPVD-LHQ----A-GADYAIGCTYKYLNGGPGSQAFVWVSPQLC--DLVPQPLSGWFGHSRQFAMEPRYEPSN 273 (416)
T ss_dssp CTTTTTTSCCC-HHH----H-TCSEEEECSSSTTCCCTTCCCEEEECTTTT--TTSCCSCCCGGGBCTTSCCCSSCCBCS
T ss_pred ccccccCcCCC-hhh----c-CCCEEEecCcccCCCCCCCeEEEEECHHHH--hccCCCccccCccccccCCCCccCCCc
Confidence 99986543321 111 1 5899999999999877788 9999876521 11211 111110000 0000000000
Q ss_pred -CccccC-CCC-CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC-C--CeEEecCC----CeeEEEEEecCCC
Q 010125 363 -DWQITL-SRR-FRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGD-K--RFEIVFPC----HFAVVCFRVSPSP 432 (517)
Q Consensus 363 -~~~~~~-sr~-~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~-~--~~~l~~~~----~~~~v~f~~~~~~ 432 (517)
...... +.. ....++..+++.+..++++++.++..++++++.+.|++. | +++++.+. ..++++|++..
T Consensus 274 ~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-- 351 (416)
T 1qz9_A 274 GIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPE-- 351 (416)
T ss_dssp SGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTT--
T ss_pred chHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecCC--
Confidence 001111 111 112344566766655788899999999999999999885 6 88887543 35677776531
Q ss_pred cchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 010125 433 VLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHLEAF 511 (517)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l 511 (517)
..++.+.|.++|+.. . ..+..++|+++.++.++++|+++++++|+++.++.
T Consensus 352 ------------------------~~~l~~~l~~~gi~~-~---~~~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~~~ 402 (416)
T 1qz9_A 352 ------------------------GYAVIQALIDRGVIG-D---YREPRIMRFGFTPLYTTFTEVWDAVQILGEILDRK 402 (416)
T ss_dssp ------------------------HHHHHHHHHTTTEEC-E---EETTTEEEEECCTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ------------------------HHHHHHHHHhCCcEe-c---cCCCCeEEEeCcccCCCHHHHHHHHHHHHHHHhcc
Confidence 245677777778542 2 22456899998545788999999999999987654
No 56
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.93 E-value=8.4e-25 Score=224.43 Aligned_cols=324 Identities=11% Similarity=0.043 Sum_probs=224.1
Q ss_pred HHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhc
Q 010125 107 AGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIG 186 (517)
Q Consensus 107 ~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g 186 (517)
+..+.+.+...+......|...++..++++++++|+.+.+|++... ..+++|+|||+|+..++.+...
T Consensus 56 ~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~-----~~v~~~~g~t~al~~~~~~l~~------- 123 (389)
T 1o4s_A 56 PEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISP-----DQVVVTNGAKQALFNAFMALLD------- 123 (389)
T ss_dssp CHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCG-----GGEEEESHHHHHHHHHHHHHCC-------
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCH-----HHEEEecCHHHHHHHHHHHhCC-------
Confidence 3455666666554433456666678999999999999988874211 2689999999999888776522
Q ss_pred ccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 187 RENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 187 ~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
+++.|++++++|.++..+++..|+ +++.+|.++++++.+|+++|++++++++ .+|+++.++|++|.+
T Consensus 124 ----~gd~Vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~~------~~v~~~~p~nptG~~ 190 (389)
T 1o4s_A 124 ----PGDEVIVFSPVWVSYIPQIILAGG---TVNVVETFMSKNFQPSLEEVEGLLVGKT------KAVLINSPNNPTGVV 190 (389)
T ss_dssp ----TTCEEEEEESCCTTHHHHHHHTTC---EEEEEECCGGGTTCCCHHHHHHTCCTTE------EEEEEESSCTTTCCC
T ss_pred ----CCCEEEEcCCCchhHHHHHHHcCC---EEEEEecCCccCCCCCHHHHHHhcccCc------eEEEEcCCCCCCCCC
Confidence 456788888999999999999999 9999998753357899999999986533 367778899999998
Q ss_pred cC---hhHHHHHHHHhCCeEEcccccccccccCc--cccccccCCCCCCeeeeccccccC-CCCcceEEEEeCchhHHhh
Q 010125 267 DP---LKPLCDVAKQFGIWVHVDAAYAGSACICP--EFRHFIDGVEGADSFSLNAHKWFF-ATLDCCCLWVKDPRALVSS 340 (517)
Q Consensus 267 dp---l~eI~~i~~~~gi~lhvDaA~g~~~~~~~--~~~~~~~g~~~aDsi~~~~hK~l~-~p~~~g~l~~~~~~~~~~~ 340 (517)
-| +++|+++|++||+++++|++|+.+....+ .... +.+....|.++.++||+++ .+..+|++++++. . .+.
T Consensus 191 ~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~-~~~~~~~~i~~~s~sK~~~~~G~r~G~l~~~~~-~-~~~ 267 (389)
T 1o4s_A 191 YRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILD-VSEGFDRIVYINGFSKSHSMTGWRVGYLISSEK-V-ATA 267 (389)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHH-HCSSSTTEEEEEESTTTTTCGGGCCEEEECCHH-H-HHH
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhh-cCCCCCcEEEEeechhhcCCcccceEEEEeCHH-H-HHH
Confidence 66 99999999999999999999987654211 1111 2222467899999999997 3345899888543 2 222
Q ss_pred hcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCC
Q 010125 341 LSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCH 420 (517)
Q Consensus 341 ~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~ 420 (517)
+.....+. + .....+..+++...+.. +++++.++..++++++.+.|++. ++++.. +.
T Consensus 268 l~~~~~~~----------------~----~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~ 324 (389)
T 1o4s_A 268 VSKIQSHT----------------T----SCINTVAQYAALKALEV-DNSYMVQTFKERKNFVVERLKKM-GVKFVE-PE 324 (389)
T ss_dssp HHHHHHHH----------------T----CSCCHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHHHT-TCCCCC-CS
T ss_pred HHHHhhhc----------------c----cCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHhc-CCeeec-CC
Confidence 21100000 0 01123444555555532 27778888899999999999887 777653 44
Q ss_pred eeEE-EEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHH-hcCcEEEeeeeECCEeEEEEEecCCCCcHHHHH
Q 010125 421 FAVV-CFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESIN-ASGKAYMTHAVLGGIYAIRFATGATLTEKRHVV 498 (517)
Q Consensus 421 ~~~v-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~ 498 (517)
.+++ .+.+. .. ..++.++|. +.|+...++..+....++|+++.. ++++++
T Consensus 325 ~~~~~~~~~~-~~------------------------~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~~---~~~~l~ 376 (389)
T 1o4s_A 325 GAFYLFFKVR-GD------------------------DVKFCERLLEEKKVALVPGSAFLKPGFVRLSFAT---SIERLT 376 (389)
T ss_dssp BSSEEEEECS-SC------------------------HHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCS---CHHHHH
T ss_pred cceEEEEeCC-CC------------------------HHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEeC---CHHHHH
Confidence 4443 44443 10 245666665 678755444333323489999852 778999
Q ss_pred HHHHHHHHHHH
Q 010125 499 VAWTVVQQHLE 509 (517)
Q Consensus 499 ~l~~~l~~~~~ 509 (517)
++++.|.++.+
T Consensus 377 ~~l~~l~~~l~ 387 (389)
T 1o4s_A 377 EALDRIEDFLN 387 (389)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999887653
No 57
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=99.93 E-value=9.6e-25 Score=226.46 Aligned_cols=332 Identities=12% Similarity=0.038 Sum_probs=224.8
Q ss_pred HHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcc
Q 010125 108 GFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGR 187 (517)
Q Consensus 108 ~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~ 187 (517)
..+.+.+...+......|... ..++++++++|+++.+|++... ...++++|+++|+..++.+++.
T Consensus 77 ~~v~~a~~~~~~~~~~~y~~~--~~~l~~~l~~~l~~~~g~~~~~-----~~v~~~~g~~ea~~~a~~~~~~-------- 141 (421)
T 3l8a_A 77 PEIKEAIINYGREHIFGYNYF--NDDLYQAVIDWERKEHDYAVVK-----EDILFIDGVVPAISIALQAFSE-------- 141 (421)
T ss_dssp HHHHHHHHHHHHHCCSSCBCC--CHHHHHHHHHHHHHHHCCCCCG-----GGEEEESCHHHHHHHHHHHHSC--------
T ss_pred HHHHHHHHHHHhcCCcCCCCC--CHHHHHHHHHHHHHHhCCCCCH-----HHEEEcCCHHHHHHHHHHHhcC--------
Confidence 345555555554433444433 3789999999999999954321 2689999999999988887632
Q ss_pred cCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecC-CCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 188 ENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTT-KSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 188 ~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d-~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
+++.|++..++|.++..++...|. +++.+|++ .++++.+|+++|+++|++. .+.+|+++.+++++|.+
T Consensus 142 ---~gd~Vi~~~~~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~~d~~~le~~i~~~-----~~~~vil~~p~nptG~~ 210 (421)
T 3l8a_A 142 ---KGDAVLINSPVYYPFARTIRLNDH---RLVENSLQIINGRFEIDFEQLEKDIIDN-----NVKIYLLCSPHNPGGRV 210 (421)
T ss_dssp ---TEEEEEEEESCCHHHHHHHHHTTE---EEEEEECEEETTEEECCHHHHHHHHHHT-----TEEEEEEESSBTTTTBC
T ss_pred ---CCCEEEECCCCcHHHHHHHHHCCC---EEEeccccccCCCeeeCHHHHHHHhhcc-----CCeEEEECCCCCCCCCc
Confidence 556788888999999999999999 99999986 4456789999999999842 12477888899999998
Q ss_pred ---cChhHHHHHHHHhCCeEEcccccccccccCcccccccc---CCCCCCeeeeccccccC-CCCcceEEEEeCchhHHh
Q 010125 267 ---DPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFID---GVEGADSFSLNAHKWFF-ATLDCCCLWVKDPRALVS 339 (517)
Q Consensus 267 ---dpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~---g~~~aDsi~~~~hK~l~-~p~~~g~l~~~~~~~~~~ 339 (517)
+++++|+++|++||+++|+|++|+++............ .....+.+..+++|+++ .+..+|+++++++....
T Consensus 211 ~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~- 289 (421)
T 3l8a_A 211 WDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRR- 289 (421)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHH-
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCCHHHHH-
Confidence 78999999999999999999999876543221111111 11244577888999997 55778999988654432
Q ss_pred hhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC
Q 010125 340 SLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPC 419 (517)
Q Consensus 340 ~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~ 419 (517)
.+...... ++......+...++.++++. +.+.++++.++..++++++.+.|++.|+++++. +
T Consensus 290 ~~~~~~~~----------------~~~~~~n~~~~~a~~aal~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~-~ 351 (421)
T 3l8a_A 290 KFQYRQLA----------------NNQHEVPTVGMIATQAAFQY-GKPWLEELKTVIEGNIKLVIKELEAKTKIKVME-P 351 (421)
T ss_dssp HHHHHHHH----------------TTCSCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCSCEEEC-C
T ss_pred HHHHHHHh----------------cccCCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhCCCceEeC-C
Confidence 22110000 00001111122233334442 566788888999999999999998878898874 4
Q ss_pred CeeEEE-EEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHh-cCcEEEeeeeE--CCEeEEEEEecCCCCcHH
Q 010125 420 HFAVVC-FRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINA-SGKAYMTHAVL--GGIYAIRFATGATLTEKR 495 (517)
Q Consensus 420 ~~~~v~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~--~g~~~lR~~~~~~~t~~~ 495 (517)
..+++. +.+...+. ...++.+.|.+ .|+...++..+ .+..++|+++. ++++
T Consensus 352 ~~~~~~~v~~~~~~~----------------------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~---~~~~ 406 (421)
T 3l8a_A 352 EGTYLVWLDFSAYAI----------------------AQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVA---TPKN 406 (421)
T ss_dssp SBSSEEEEECGGGTC----------------------CTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC---SCHH
T ss_pred CeeEEEEEeccccCC----------------------CHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEec---CCHH
Confidence 444444 55542110 02355666654 47654433322 23578999985 4788
Q ss_pred HHHHHHHHHHHHHH
Q 010125 496 HVVVAWTVVQQHLE 509 (517)
Q Consensus 496 di~~l~~~l~~~~~ 509 (517)
+|++++++|.++.+
T Consensus 407 ~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 407 TVQEALSRIISVFG 420 (421)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987653
No 58
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=99.93 E-value=2.6e-24 Score=221.87 Aligned_cols=337 Identities=12% Similarity=0.084 Sum_probs=222.8
Q ss_pred hHHHHHHHHHhccccc---ccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHH
Q 010125 106 IAGFLGEMLSSGFNIV---GFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVL 182 (517)
Q Consensus 106 ~~~~~~~~l~~~~n~~---~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~ 182 (517)
++..+.+.+...+... .. |...++..++++++.+|+.+.+|++... ..+++|+|||+|+..++.++++
T Consensus 50 ~~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~-----~~v~~t~g~t~a~~~~~~~~~~--- 120 (407)
T 2zc0_A 50 PRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLKKYDHLEVSP-----ENIVITIGGTGALDLLGRVLID--- 120 (407)
T ss_dssp CHHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCG-----GGEEEESHHHHHHHHHHHHHCC---
T ss_pred CHHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCc-----ceEEEecCHHHHHHHHHHHhcC---
Confidence 3445556555554322 23 6555578999999999999988853221 2689999999999888877642
Q ss_pred HHhcccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEE-EeeccCC
Q 010125 183 NKIGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFL-CATIGTT 261 (517)
Q Consensus 183 ~~~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~v-v~t~gtt 261 (517)
+++.|++..++|.++..+++..|+ +++.+|+++ ++ +|+++|++++++....+..+.+| +.+.++|
T Consensus 121 --------~gd~vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~--~~-~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~n 186 (407)
T 2zc0_A 121 --------PGDVVITENPSYINTLLAFEQLGA---KIEGVPVDN--DG-MRVDLLEEKIKELKAKGQKVKLIYTIPTGQN 186 (407)
T ss_dssp --------TTCEEEEEESCCHHHHHHHHTTTC---EEEEEEEET--TE-ECHHHHHHHHHHHHHTTCCEEEEEECCSSCT
T ss_pred --------CCCEEEEeCCChHHHHHHHHHcCC---EEEEcccCC--CC-CCHHHHHHHHHhhhcccCCceEEEECCCCCC
Confidence 456688888999999999999999 999999875 33 99999999998432222234454 5678899
Q ss_pred ccccccChh---HHHHHHHHhCCeEEcccccccccccCccccccccCC--CCCCeeeeccccccCCCCcceEEEEeCchh
Q 010125 262 AITAVDPLK---PLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGV--EGADSFSLNAHKWFFATLDCCCLWVKDPRA 336 (517)
Q Consensus 262 ~~G~idpl~---eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~--~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~ 336 (517)
++|.+.|++ +|+++|++||+++|+|++|+.+.+....... +..+ ...+.+..++||+++....+|+++++ ++.
T Consensus 187 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~-~~~ 264 (407)
T 2zc0_A 187 PMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVP-LKALDNEGRVIVAGTLSKVLGTGFRIGWIIAE-GEI 264 (407)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCC-GGGGCSSCCEEEEEESTTTTCTTSCCEEEECC-HHH
T ss_pred CCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCC-hhhcCCCCCEEEEcccccccCCCcceEEEecC-HHH
Confidence 999998886 9999999999999999999886542211111 1111 12345677899999944568999885 332
Q ss_pred HHhhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHh--c--H-HHHHHHHHHHHHHHHHHHHHHhc-C
Q 010125 337 LVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNY--G--V-ANLRHFLRSHVNMAKLFERLVSG-D 410 (517)
Q Consensus 337 ~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~--g--~-~g~~~~i~~~~~~a~~l~~~l~~-~ 410 (517)
.+.+...... ++. ....+..+++...+ + . +.++++.++..++++++.+.|++ .
T Consensus 265 -~~~~~~~~~~----------------~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 323 (407)
T 2zc0_A 265 -LKKVLMQKQP----------------IDF----CAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHL 323 (407)
T ss_dssp -HHHHHHHHTT----------------TTS----SSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHh----------------hcC----CCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 2222110000 000 11223333333322 2 2 44566777788899999999977 5
Q ss_pred CCeEEecCCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhc-CcEEEeeeeEC----CEeEEEE
Q 010125 411 KRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINAS-GKAYMTHAVLG----GIYAIRF 485 (517)
Q Consensus 411 ~~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~----g~~~lR~ 485 (517)
|+++++.+....++++++... . ...++.+.|.++ |+...++..+. +..++|+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~-~----------------------~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRi 380 (407)
T 2zc0_A 324 PNAEFTKPIAGMFVMFFLPEG-A----------------------DGISFANELMEREGVVVVPGKPFYTDESGKNAIRL 380 (407)
T ss_dssp TTSCBCCCSBSSEEEEECSTT-C----------------------CHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEE
T ss_pred CCCEEecCCCcEEEEEEcCCC-C----------------------CHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEE
Confidence 777765444444666666421 0 124567777777 76544333221 3468999
Q ss_pred EecCCCCcHHHHHHHHHHHHHHHHHHHh
Q 010125 486 ATGATLTEKRHVVVAWTVVQQHLEAFQS 513 (517)
Q Consensus 486 ~~~~~~t~~~di~~l~~~l~~~~~~l~~ 513 (517)
++... +++++++++++|.++.+++.+
T Consensus 381 s~~~~--~~~~i~~~~~~l~~~l~~~~~ 406 (407)
T 2zc0_A 381 NFSRP--SKEEIPIGIKKLAKLYKEKFG 406 (407)
T ss_dssp ECSSS--CTTHHHHHHHHHHHHHHHHC-
T ss_pred EeCCC--CHHHHHHHHHHHHHHHHHHhc
Confidence 99643 677999999999999877654
No 59
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=99.93 E-value=9.1e-24 Score=216.85 Aligned_cols=300 Identities=11% Similarity=0.072 Sum_probs=210.9
Q ss_pred HHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHH
Q 010125 132 TELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQI 211 (517)
Q Consensus 132 ~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~ 211 (517)
.....++.+++++++|.+. .+++++||+|+..++.+..+ +++.|+++.++|.++..+++.
T Consensus 87 ~~~~~~l~~~la~~~~~~~---------~i~~~sGt~a~~~~l~~~~~-----------~gd~v~~~~~~~~~~~~~~~~ 146 (399)
T 3tqx_A 87 QTIHKELEKDISEFLGTDD---------TILYSSCFDANGGLFETLLG-----------PEDAIISDELNHASIIDGIRL 146 (399)
T ss_dssp BHHHHHHHHHHHHHHTCSE---------EEEESCHHHHHHTTHHHHCC-----------TTCEEEEETTCCHHHHHHHHS
T ss_pred chHHHHHHHHHHHHHCCCc---------EEEECchHHHHHHHHHHhcC-----------CCCEEEECCcccHHHHHHHHH
Confidence 4455667778888888763 35666678998877755422 566788999999999999999
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEccccccc
Q 010125 212 VGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAG 291 (517)
Q Consensus 212 ~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~ 291 (517)
.|. +++.+|. +|+++|++++++....+..+.+|+++.+++++|.+.|+++|.++|++||+++|+|++|+.
T Consensus 147 ~g~---~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~ 216 (399)
T 3tqx_A 147 CKA---QRYRYKN-------NAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAV 216 (399)
T ss_dssp CCS---EEEEECT-------TCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTT
T ss_pred cCC---ceeEeCC-------CCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccc
Confidence 999 8888875 477899999988665555677899999999999999999999999999999999999974
Q ss_pred ccccCcccccc--ccC-CCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCccccCCccccccccccCCCccccC
Q 010125 292 SACICPEFRHF--IDG-VEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITL 368 (517)
Q Consensus 292 ~~~~~~~~~~~--~~g-~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~ 368 (517)
++... ..... ..+ ....|+++.++||+++++.+ |+++.++ ............|... .
T Consensus 217 ~~~~~-~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~~~~~-~~~~~~~~~~~~~~~~-----------------~ 276 (399)
T 3tqx_A 217 GFIGE-NGRGTPEYCGVADRVDILTGTLGKALGGASG-GYTSGHK-EIIEWLRNRSRPYLFS-----------------N 276 (399)
T ss_dssp TTSST-TSCCHHHHHTCTTCCSEEEEESSSSSCSSCC-EEEEECH-HHHHHHHHHCHHHHSS-----------------C
T ss_pred cccCC-CCCchHHhhCCCCCCcEEEecchHhcccCce-EEEEcCH-HHHHHHHHhCcceecc-----------------C
Confidence 43221 11111 112 24679999999999985544 7776643 3322111111122110 0
Q ss_pred CCCCCch---HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCeeEEEEEecCCCcchhhhhhhhhcc
Q 010125 369 SRRFRSL---KLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNC 445 (517)
Q Consensus 369 sr~~~al---~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~ 445 (517)
....+ .+..+++... ++.+++.++..++++++.+.|++. ++++. ++..+++++.+...
T Consensus 277 --~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~-------------- 337 (399)
T 3tqx_A 277 --TVAPVIVATSLKVLELLK-TEGPQLRKQLQENSRYFRAGMEKL-GFQLV-PGNHPIIPVMLGDA-------------- 337 (399)
T ss_dssp --CCCHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCSSSEEEEEEECH--------------
T ss_pred --CCcHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHc-CCCcC-CCCCCEEEEEeCCH--------------
Confidence 11222 3333343332 567888899999999999999887 77765 66677777776431
Q ss_pred ccchHHHHHHHHHHHHHHHHhcCcEEEeeee----ECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 010125 446 LLSEEEQINEFNRELLESINASGKAYMTHAV----LGGIYAIRFATGATLTEKRHVVVAWTVVQQHLEAF 511 (517)
Q Consensus 446 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~----~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l 511 (517)
....++.++|.++|+... +.. ..+..++|+++. ..++++++++++++|+++.+++
T Consensus 338 ---------~~~~~~~~~l~~~gi~v~-~~~~~~~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~~~~ 396 (399)
T 3tqx_A 338 ---------QLATNMADHLLQEGIYVV-GFSYPVVPMGKARIRVQMS-AVHTQQQLDRAIEAFGQVGKKL 396 (399)
T ss_dssp ---------HHHHHHHHHHHHTTEECC-EECTTTSCTTCEEEEEECC-TTCCHHHHHHHHHHHHHHHHHT
T ss_pred ---------HHHHHHHHHHHHCCCEEe-eeCCCCCCCCCceEEEEee-cCCCHHHHHHHHHHHHHHHHHh
Confidence 234677788888886543 332 234679999984 5778889999999999987754
No 60
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.93 E-value=2.6e-24 Score=223.69 Aligned_cols=358 Identities=12% Similarity=0.134 Sum_probs=225.9
Q ss_pred CCccceeCCCCCChHHHHHHHHHhcccc----cccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchH
Q 010125 93 SPNYFAYFPSSGSIAGFLGEMLSSGFNI----VGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCE 168 (517)
Q Consensus 93 ~p~~~~~~~~~~~~~~~~~~~l~~~~n~----~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~ 168 (517)
...|+++...++.++.++ +.+...+.. ....|..++....+..++++++++++|.+++ .+++|+|||+
T Consensus 18 ~~~~Ld~~~~~~~~~~v~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-------~v~~~~g~t~ 89 (432)
T 3a9z_A 18 RKVYMDYNATTPLEPEVI-QAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQ-------DIIFTSGGTE 89 (432)
T ss_dssp CCEECBTTTCCCCCHHHH-HHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGG-------GEEEESCHHH
T ss_pred CcEEeeCCccCCCCHHHH-HHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcC-------eEEEeCChHH
Confidence 345777765555555543 444333311 1223444556677888999999999998754 6899999999
Q ss_pred HHHHHHHHHHHHHHH---HhcccC------C-CCeEEEeCCCCchHHHHHHHH----cCCCCCCEEEEecCCCCCcccCH
Q 010125 169 AILCTLTAARDRVLN---KIGREN------I-SKLIVYGSDQTHCALQKAAQI----VGIDVKNFRAIKTTKSSSYGLSP 234 (517)
Q Consensus 169 a~~~al~~ar~~~~~---~~g~~~------~-~~~~v~~s~~~H~s~~kaa~~----~G~g~~~v~~vp~d~~~~~~~d~ 234 (517)
|+..++.++.+.+.. +.|.+- . ....|+++..+|.|+.++... .|+ +++.||++. +++.+|+
T Consensus 90 a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~---~v~~v~~~~-~~~~~d~ 165 (432)
T 3a9z_A 90 SNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVA---EVTFVPVSK-VNGQVEV 165 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSC---EEEEECCCT-TTSSCCH
T ss_pred HHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCc---EEEEEecCc-ccCCcCH
Confidence 999888877532211 112110 0 124788899999998776543 577 999999874 2468999
Q ss_pred HHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhC----------CeEEcccccccccccCcccccccc
Q 010125 235 DSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFG----------IWVHVDAAYAGSACICPEFRHFID 304 (517)
Q Consensus 235 ~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~g----------i~lhvDaA~g~~~~~~~~~~~~~~ 304 (517)
++|+++|+++ +.+|+++.++|++|.+.|+++|.++|++|| +|+|+|++|+.+....+ ...
T Consensus 166 ~~l~~~i~~~------~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~~~~-~~~--- 235 (432)
T 3a9z_A 166 EDILAAVRPT------TCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVD-VED--- 235 (432)
T ss_dssp HHHHHTCCTT------EEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTSCCC-HHH---
T ss_pred HHHHHhccCC------ceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCcccC-hhh---
Confidence 9999998753 348899999999999999999999999999 99999999976543221 111
Q ss_pred CCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCccccCCccccccccccCCCccccCCCCC-CchHHHHHHHH
Q 010125 305 GVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRF-RSLKLWFVIRN 383 (517)
Q Consensus 305 g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~-~al~~~~~l~~ 383 (517)
.++|++++++|||++ |. +|++++++..... ...+.+..... ...+. ..+... ....+..+++.
T Consensus 236 --~~~d~~~~s~~K~~g-~~-~G~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~----~~~~~~~~~~a~~aal~~ 299 (432)
T 3a9z_A 236 --LGVDFLTIVGHKFYG-PR-IGALYVRGVGKLT---PLYPMLFGGGQ-----ERNFR----PGTENTPMIAGLGKAADL 299 (432)
T ss_dssp --HCCSEEEEEGGGTTC-CS-CEEEEETTBTTTB---CCCCSCCSSCG-----GGGTS----CSCCCHHHHHHHHHHHHH
T ss_pred --cCCCEEEEehhHhcC-Cc-ceEEEEccccccC---CcCceeecCCc-----ccccc----CCCcCHHHHHHHHHHHHH
Confidence 158999999999985 66 9999997653111 11111211100 00000 011111 11233344544
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe--cC----CC-eeEEEEEecCCCcchhhhhhhhhccccchHHHHHHH
Q 010125 384 YGVANLRHFLRSHVNMAKLFERLVSGDKRFEIV--FP----CH-FAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEF 456 (517)
Q Consensus 384 ~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~--~~----~~-~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (517)
+ .++++++.++..++++++.+.|++++++++. .+ .. .++++|.+..... +
T Consensus 300 ~-~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~------- 356 (432)
T 3a9z_A 300 V-SENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQL---------------R------- 356 (432)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTTC---------------C-------
T ss_pred H-HhhHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCCC---------------c-------
Confidence 3 4578889999999999999999886565442 22 11 2367788764210 0
Q ss_pred HHHHHHHHH----hcCcEEEeee------e--ECC------EeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 010125 457 NRELLESIN----ASGKAYMTHA------V--LGG------IYAIRFATGATLTEKRHVVVAWTVVQQHLEAFQ 512 (517)
Q Consensus 457 ~~~l~~~l~----~~g~~~~~~~------~--~~g------~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l~ 512 (517)
...+.+.+. +.|..+.+.. . ..| ..++|+++. ..++++|++++++.|+++.+++.
T Consensus 357 ~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~-~~~t~eei~~~~~~l~~~~~~~~ 429 (432)
T 3a9z_A 357 GYMVLAQCQTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVG-RSTTRAEVDLIVQDLKQAVNQLE 429 (432)
T ss_dssp HHHHHHHCSSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECC-TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcC-CCCCHHHHHHHHHHHHHHHHHhc
Confidence 112233221 1222111100 0 001 258999985 57788899999999999887664
No 61
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=99.93 E-value=3.3e-24 Score=218.88 Aligned_cols=329 Identities=10% Similarity=0.047 Sum_probs=221.3
Q ss_pred HHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhc
Q 010125 107 AGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIG 186 (517)
Q Consensus 107 ~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g 186 (517)
+..+.+.+...+......|... ..++++++.+++++.+|.+... ...++|+|||+|+..++.+..+
T Consensus 39 ~~~v~~a~~~~~~~~~~~y~~~--~~~~~~~l~~~l~~~~g~~~~~-----~~v~~~~g~~~a~~~~~~~l~~------- 104 (383)
T 3kax_A 39 PQPIQTALKKRIEHPIFGYTLP--PENIGDIICNWTKKQYNWDIQK-----EWIVFSAGIVPALSTSIQAFTK------- 104 (383)
T ss_dssp CHHHHHHHHHHHHSCCCCCCCC--CTTHHHHHHHHHHHHHCCCCCG-----GGEEEESCHHHHHHHHHHHHCC-------
T ss_pred CHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHHHHHHHHhCCCCCh-----hhEEEcCCHHHHHHHHHHHhCC-------
Confidence 3455555655554434444433 6788999999999999943221 2689999999999888776532
Q ss_pred ccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCC-CCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcccc
Q 010125 187 RENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKS-SSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITA 265 (517)
Q Consensus 187 ~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~-~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~ 265 (517)
+++.|++..++|.++..+++..|. +++.+|++++ +++.+|+++|+++++.++ .+|+++.+++++|.
T Consensus 105 ----~gd~vl~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~d~~~l~~~l~~~~------~~v~i~~p~nptG~ 171 (383)
T 3kax_A 105 ----ENESVLVQPPIYPPFFEMVTTNNR---QLCVSPLQKQNDTYAIDFEHLEKQFQQGV------KLMLLCSPHNPIGR 171 (383)
T ss_dssp ----TTCEEEECSSCCHHHHHHHHHTTC---EEEECCCEEETTEEECCHHHHHHHHTTTC------CEEEEESSBTTTTB
T ss_pred ----CCCEEEEcCCCcHHHHHHHHHcCC---EEEeccceecCCcEEEcHHHHHHHhCcCC------eEEEEeCCCCCCCc
Confidence 556788999999999999999999 9999998642 246799999999994433 36777889999999
Q ss_pred ccC---hhHHHHHHHHhCCeEEcccccccccccCccccccccCC---CCCCeeeeccccccC-CCCcceEEEEeCchhHH
Q 010125 266 VDP---LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGV---EGADSFSLNAHKWFF-ATLDCCCLWVKDPRALV 338 (517)
Q Consensus 266 idp---l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~---~~aDsi~~~~hK~l~-~p~~~g~l~~~~~~~~~ 338 (517)
+-| +++|+++|++||+++|+|++|+.+.............. ...+.++.++||+++ .+..+|++++.++....
T Consensus 172 ~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~ 251 (383)
T 3kax_A 172 VWKKEELTKLGSLCTKYNVIVVADEIHSDIIYADHTHTPFASLSEELAARTITCMAPSKTFNIAGLQASIIIIPNEKLRQ 251 (383)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCceeHhhcCccccCcEEEEEEChhhccCcchhheEEEeCCHHHHH
Confidence 966 66666779999999999999987654322111111111 134477889999998 55678888876554332
Q ss_pred hhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEE
Q 010125 339 SSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNY--GVANLRHFLRSHVNMAKLFERLVSG-DKRFEI 415 (517)
Q Consensus 339 ~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~--g~~g~~~~i~~~~~~a~~l~~~l~~-~~~~~l 415 (517)
.+....... +. .....+..+++...+ +.+.++++.++..++++++.+.|++ +|++++
T Consensus 252 -~~~~~~~~~----------------~~---~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 311 (383)
T 3kax_A 252 -AFTSIQYRQ----------------GF---HGLNIFAYTAMQSAYTECNDWLNEIRFYIEDNAKFACEYIKDHIPTLSV 311 (383)
T ss_dssp -HHHHHHHHT----------------TC---CCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred -HHHHHHhhc----------------cc---CCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCceE
Confidence 221100000 00 011233344444443 3556788888999999999999987 789988
Q ss_pred ecCCCeeEEE-EEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHH-hcCcEEEeeeeE--CCEeEEEEEecCCC
Q 010125 416 VFPCHFAVVC-FRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESIN-ASGKAYMTHAVL--GGIYAIRFATGATL 491 (517)
Q Consensus 416 ~~~~~~~~v~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~--~g~~~lR~~~~~~~ 491 (517)
+ .+..+++. +.+...+ ....++.+.|. +.|+...++..+ .+..++|++++
T Consensus 312 ~-~~~~~~~~~~~~~~~~----------------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~--- 365 (383)
T 3kax_A 312 M-KPEGSFLLWIDCSALN----------------------LSQDERTKLLEEKGKIIVEPGEKYGLGGEEHIGINIG--- 365 (383)
T ss_dssp C-CCSBSSEEEEECGGGC----------------------CCHHHHHHHHHHTSCEECEESGGGCTTCTTEEEEECS---
T ss_pred e-cCCceEEEEEEccccC----------------------CCHHHHHHHHHhhCCEEeECchhhcCCCCCeEEEEEc---
Confidence 6 44445544 4443211 01346677776 567654443322 23578999985
Q ss_pred CcHHHHHHHHHHHHHHH
Q 010125 492 TEKRHVVVAWTVVQQHL 508 (517)
Q Consensus 492 t~~~di~~l~~~l~~~~ 508 (517)
++++++++++++|.++.
T Consensus 366 ~~~~~i~~~l~~l~~~l 382 (383)
T 3kax_A 366 CPRSVLEEILNRLRHTF 382 (383)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 37789999999988764
No 62
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.93 E-value=9.9e-24 Score=216.31 Aligned_cols=332 Identities=12% Similarity=0.030 Sum_probs=222.2
Q ss_pred HHHHHHHHHhcccccccccccChhhHH-HHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHh
Q 010125 107 AGFLGEMLSSGFNIVGFNWISSPAATE-LENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKI 185 (517)
Q Consensus 107 ~~~~~~~l~~~~n~~~~~~~~sp~~~~-lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~ 185 (517)
+..+.+.+...++.....|... ..+ +++++++|+.+.+|++... ...++|+|+|+|+..++.+...
T Consensus 43 ~~~v~~a~~~~~~~~~~~y~~~--~~~~lr~~la~~l~~~~g~~~~~-----~~v~~t~g~~~al~~~~~~l~~------ 109 (390)
T 1d2f_A 43 APCIIEALNQRLMHGVFGYSRW--KNDEFLAAIAHWFSTQHYTAIDS-----QTVVYGPSVIYMVSELIRQWSE------ 109 (390)
T ss_dssp CHHHHHHHHHHHTTCCCCCCCS--CCHHHHHHHHHHHHHHSCCCCCG-----GGEEEESCHHHHHHHHHHHSSC------
T ss_pred CHHHHHHHHHHHhCCCCCCCCC--ChHHHHHHHHHHHHHhcCCCCCH-----HHEEEcCCHHHHHHHHHHHhcC------
Confidence 4456666666665433455443 677 9999999999988853221 2689999999999877776532
Q ss_pred cccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCC-CcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccc
Q 010125 186 GRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSS-SYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAIT 264 (517)
Q Consensus 186 g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~-~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G 264 (517)
+++.|++..++|.++..+++..|. +++.+|++.++ ++.+|+++|++++++. .+.+|+++.+++++|
T Consensus 110 -----~gd~vl~~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~~d~~~l~~~l~~~-----~~~~v~l~~p~nptG 176 (390)
T 1d2f_A 110 -----TGEGVVIHTPAYDAFYKAIEGNQR---TVMPVALEKQADGWFCDMGKLEAVLAKP-----ECKIMLLCSPQNPTG 176 (390)
T ss_dssp -----TTCEEEEEESCCHHHHHHHHHTTC---EEEEEECEECSSSEECCHHHHHHHHTST-----TEEEEEEESSCTTTC
T ss_pred -----CCCEEEEcCCCcHHHHHHHHHCCC---EEEEeecccCCCccccCHHHHHHHhccC-----CCeEEEEeCCCCCCC
Confidence 456788888999999999999999 99999987532 4679999999999642 134677788999999
Q ss_pred cccC---hhHHHHHHHHhCCeEEcccccccccccCccccccccCCC-CC-CeeeeccccccC-CCCcceEEEEeCchhHH
Q 010125 265 AVDP---LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE-GA-DSFSLNAHKWFF-ATLDCCCLWVKDPRALV 338 (517)
Q Consensus 265 ~idp---l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~-~a-Dsi~~~~hK~l~-~p~~~g~l~~~~~~~~~ 338 (517)
.+-| +++|+++|++||+++++|++|+.+.......... ..+. .. |. ..++||+++ ....+|+++++++....
T Consensus 177 ~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~-~~~~~~~~d~-~~s~sK~~~~~G~r~G~~~~~~~~~~~ 254 (390)
T 1d2f_A 177 KVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPW-SNVARGDWAL-LTSGSKSFNIPALTGAYGIIENSSSRD 254 (390)
T ss_dssp CCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCG-GGTCCSSEEE-EECSHHHHTCGGGCCEEEEECSHHHHH
T ss_pred cCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCH-HHcchhhHhh-ccCccHhhcccChhheEEEECCHHHHH
Confidence 9866 8899999999999999999998765432111111 1121 22 55 888999997 44568999987654322
Q ss_pred hhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEE
Q 010125 339 SSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNY--GVANLRHFLRSHVNMAKLFERLVSG-DKRFEI 415 (517)
Q Consensus 339 ~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~--g~~g~~~~i~~~~~~a~~l~~~l~~-~~~~~l 415 (517)
.+.....+ . .++. ....+..+++...+ +.+.++++.++..++++++.+.|++ +|++++
T Consensus 255 -~~~~~~~~---~------------~~~~---~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 315 (390)
T 1d2f_A 255 -AYLSALKG---R------------DGLS---SPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNW 315 (390)
T ss_dssp -HHHHHHHT---T------------SCCC---SCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCC
T ss_pred -HHHHHHhh---h------------cccC---CCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEE
Confidence 22110000 0 0000 01223333333332 3566788888889999999999988 788876
Q ss_pred ecCCCeeEE-EEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHH-hcCcEEEeeeeEC--CEeEEEEEecCCC
Q 010125 416 VFPCHFAVV-CFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESIN-ASGKAYMTHAVLG--GIYAIRFATGATL 491 (517)
Q Consensus 416 ~~~~~~~~v-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--g~~~lR~~~~~~~ 491 (517)
. ++..+++ .+.+...+. ...++.+.|. +.|+...++..+. +..++|++++.
T Consensus 316 ~-~~~~~~~~~~~~~~~~~----------------------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~-- 370 (390)
T 1d2f_A 316 Q-IPQSTYLAWLDLRPLNI----------------------DDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC-- 370 (390)
T ss_dssp C-CCSBCSEEEEECGGGCC----------------------CHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS--
T ss_pred e-cCCccEEEEEEccccCC----------------------CHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecC--
Confidence 5 4555554 355532100 1245677777 5686554443332 34689999864
Q ss_pred CcHHHHHHHHHHHHHHHHHH
Q 010125 492 TEKRHVVVAWTVVQQHLEAF 511 (517)
Q Consensus 492 t~~~di~~l~~~l~~~~~~l 511 (517)
++++++++++.|.++.+++
T Consensus 371 -~~~~l~~~l~~l~~~l~~~ 389 (390)
T 1d2f_A 371 -PRSKLEKGVAGLINAIRAV 389 (390)
T ss_dssp -CHHHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHhh
Confidence 4679999999998887654
No 63
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.92 E-value=9.8e-24 Score=219.74 Aligned_cols=325 Identities=10% Similarity=0.043 Sum_probs=220.2
Q ss_pred ccccChhhHHHHHHHHHHHHHHcC----CCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCC
Q 010125 124 NWISSPAATELENIVMDWLGQMLK----LPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSD 199 (517)
Q Consensus 124 ~~~~sp~~~~lE~~v~~~l~~l~g----~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~ 199 (517)
.|....+..++++++++|+.+..| .+++ .+++|+|||+||..++.+.++ +++.|++.+
T Consensus 81 ~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~-------~v~~~~gg~~a~~~~~~~l~~-----------~gd~vl~~~ 142 (435)
T 3piu_A 81 LFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPN-------HLVLTAGATSANETFIFCLAD-----------PGEAVLIPT 142 (435)
T ss_dssp HCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGG-------GEEEEEHHHHHHHHHHHHHCC-----------TTCEEEEEE
T ss_pred ccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHH-------HEEEcCChHHHHHHHHHHhcC-----------CCCeEEECC
Confidence 455556678999999999998766 2333 789999999999888876643 456788888
Q ss_pred CCchHHHHHHH-HcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccC---hhHHHHH
Q 010125 200 QTHCALQKAAQ-IVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDP---LKPLCDV 275 (517)
Q Consensus 200 ~~H~s~~kaa~-~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idp---l~eI~~i 275 (517)
++|.++..++. ..|. +++.+|++.++++.+|+++|+++|++..+.+..+.+|+++.+++++|.+-+ +++|+++
T Consensus 143 p~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~ 219 (435)
T 3piu_A 143 PYYPGFDRDLKWRTGV---EIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSF 219 (435)
T ss_dssp SCCTTHHHHTTTTTCC---EEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred CccccHHHHHHHhcCC---EEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHH
Confidence 99999998887 7888 999999986555789999999999886655556778889999999999854 6888999
Q ss_pred HHHhCCeEEcccccccccccCcccccc---ccC--C------CCCCeeeeccccccC-CCCcceEEEEeCchhHHhhhcC
Q 010125 276 AKQFGIWVHVDAAYAGSACICPEFRHF---IDG--V------EGADSFSLNAHKWFF-ATLDCCCLWVKDPRALVSSLST 343 (517)
Q Consensus 276 ~~~~gi~lhvDaA~g~~~~~~~~~~~~---~~g--~------~~aDsi~~~~hK~l~-~p~~~g~l~~~~~~~~~~~~~~ 343 (517)
|++||+++++|++|+++.+........ ... + .....+..++||+++ .+..+|+++++++... ..+..
T Consensus 220 ~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~-~~~~~ 298 (435)
T 3piu_A 220 VEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVV-AAATK 298 (435)
T ss_dssp HHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHH-HHHHH
T ss_pred HHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHH-HHHHH
Confidence 999999999999998765433221111 110 0 122267889999997 5567899988665432 22211
Q ss_pred CccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhc-----HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC
Q 010125 344 NPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYG-----VANLRHFLRSHVNMAKLFERLVSGDKRFEIVFP 418 (517)
Q Consensus 344 ~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g-----~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~ 418 (517)
...+.. ...+...++...+. .+.++++.++..++++++.+.|++. +++++.+
T Consensus 299 ~~~~~~----------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 355 (435)
T 3piu_A 299 MSSFGL----------------------VSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS-GISCLNG 355 (435)
T ss_dssp HGGGSC----------------------CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCEECCC
T ss_pred HhhcCC----------------------CCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCC
Confidence 111100 01222222222221 2345677788888999999999987 8887643
Q ss_pred CCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhc-CcEEEeeeeE--CCEeEEEEEecCCCCcHH
Q 010125 419 CHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINAS-GKAYMTHAVL--GGIYAIRFATGATLTEKR 495 (517)
Q Consensus 419 ~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~--~g~~~lR~~~~~~~t~~~ 495 (517)
....++.+.+..... ... .....++.++|.++ |+...++..+ .+..++|+++.. . +++
T Consensus 356 ~~g~~~~~~l~~~~~-------------~~~----~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~-~-~~e 416 (435)
T 3piu_A 356 NAGLFCWVDMRHLLR-------------SNT----FEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFAN-L-PER 416 (435)
T ss_dssp CSSSEEEEECGGGSS-------------SSS----HHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSS-S-CHH
T ss_pred CeeEEEEEEcccccc-------------cCC----chhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEEeeC-C-CHH
Confidence 333556666543100 000 11234667777666 7654443332 346789999843 3 788
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010125 496 HVVVAWTVVQQHLEAFQ 512 (517)
Q Consensus 496 di~~l~~~l~~~~~~l~ 512 (517)
+|++++++|.++.+++.
T Consensus 417 ~i~~~l~~l~~~l~~~~ 433 (435)
T 3piu_A 417 TLDLAMQRLKAFVGEYY 433 (435)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999887653
No 64
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.92 E-value=1.5e-24 Score=220.17 Aligned_cols=344 Identities=12% Similarity=0.036 Sum_probs=222.7
Q ss_pred ceeCCCCCChHHHHHHHHHhcccc--c-ccc---cccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEE-cCCchHH
Q 010125 97 FAYFPSSGSIAGFLGEMLSSGFNI--V-GFN---WISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVI-QGTTCEA 169 (517)
Q Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~n~--~-~~~---~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~-t~ggt~a 169 (517)
|+...+++.++.++..+.....+. | ... ...++.+.++-+++++.+++++|.++.. ..+| |+|||++
T Consensus 16 ~n~at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~------evif~t~~~T~a 89 (377)
T 3e77_A 16 ENLYFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNY------KVIFLQGGGCGQ 89 (377)
T ss_dssp CCEECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTE------EEEEESSHHHHH
T ss_pred ccccccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCC------eEEEEcCchHHH
Confidence 344445566666665555444322 1 111 2235667788889999999999997642 5787 6899999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHH--HHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhc
Q 010125 170 ILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCAL--QKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEV 247 (517)
Q Consensus 170 ~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~--~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~ 247 (517)
+.+++...... .+++.+++....|++. .+.++..|. .++.+|++. ++..+++.++.+++++++
T Consensus 90 ~n~a~~~l~~~---------~~Gd~v~~~~~g~~~~~~~~~a~~~G~---~~~~~~~~~--~~~~~~~~~~~~i~~~t~- 154 (377)
T 3e77_A 90 FSAVPLNLIGL---------KAGRCADYVVTGAWSAKAAEEAKKFGT---INIVHPKLG--SYTKIPDPSTWNLNPDAS- 154 (377)
T ss_dssp HHHHHHHHGGG---------STTCEEEECCCSHHHHHHHHHHTTTSE---EEECSCCCS--SSCSCCCGGGCCCCTTCS-
T ss_pred HHHHHHhccCC---------CCCCeEEEEECCHHHHHHHHHHHHhCC---ceEEeccCC--CcCCCCChHHhccCCCcc-
Confidence 98877654321 0234555555677763 233444466 677778764 346677777666655443
Q ss_pred CCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcce
Q 010125 248 GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCC 327 (517)
Q Consensus 248 g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g 327 (517)
+|.+++.+|.+|.+.|+ +|+++|+++|||++++.+..+.+-. ..|.+++++|||++ |.|+|
T Consensus 155 -----lV~~~h~et~tG~~~pi-----i~~~~~~~~~vD~~q~~g~~~id~~--------~~~~~~~s~~K~~g-p~G~g 215 (377)
T 3e77_A 155 -----YVYYCANETVHGVEFDF-----IPDVKGAVLVCDMSSNFLSKPVDVS--------KFGVIFAGAQKNVG-SAGVT 215 (377)
T ss_dssp -----CEEEESEETTTTEECSS-----CCCCTTCCEEEECTTTTTSSCCCGG--------GCSEEEEEGGGTTS-CTTCE
T ss_pred -----EEEEeCccCchheEchh-----hhccCCCEEEEEcccccCCCCCchh--------hcCEEEEecccccC-CCccE
Confidence 78889999999999999 5789999999999998888766421 34468999999995 99999
Q ss_pred EEEEeCchhHHhhhcCCccccCCccccccccccCCCccccCCCC-CCchHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHH
Q 010125 328 CLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRR-FRSLKLWFVIRNYGVA-NLRHFLRSHVNMAKLFER 405 (517)
Q Consensus 328 ~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~-~~al~~~~~l~~~g~~-g~~~~i~~~~~~a~~l~~ 405 (517)
++++|++... +.-...+.|+...... . ......+-. +..+.+-.+++.+-.+ |++++.++..++++++++
T Consensus 216 ~l~~~~~~l~-~~~~~~p~~~~~~~~~-----~--~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~ 287 (377)
T 3e77_A 216 VVIVRDDLLG-FALRECPSVLEYKVQA-----G--NSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYE 287 (377)
T ss_dssp EEEEETTSCS-CCCTTSCGGGCHHHHH-----T--TTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcHHHHh-hccCCCCchhhHHHHh-----h--cCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 9999876421 1111122332111000 0 000001111 1224556677777667 899999999999999999
Q ss_pred HHhcCCCeEEec-CC--Cee-EEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEe
Q 010125 406 LVSGDKRFEIVF-PC--HFA-VVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIY 481 (517)
Q Consensus 406 ~l~~~~~~~l~~-~~--~~~-~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~ 481 (517)
.|+++|++++.. ++ .++ +++|.+.... .. ..+...+.+.+.+.|++...+ .....
T Consensus 288 ~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~----------------~~---~~~~~~~l~~l~~~Gi~~~~g--~~~~g 346 (377)
T 3e77_A 288 IIDNSQGFYVCPVEPQNRSKMNIPFRIGNAK----------------GD---DALEKRFLDKALELNMLSLKG--HRSVG 346 (377)
T ss_dssp HHHTSTTSEECCSCGGGBCSSEEEEEESSTT----------------CC---HHHHHHHHHHHHHTTEESCBC--CTTTC
T ss_pred HHHhcCCceecCCCHHHcCCcEEEEEcCCCC----------------Cc---hhHHHHHHHHHHHCCcEEeCC--CCcCC
Confidence 999999998643 12 333 6899987531 00 122245666666778654332 22234
Q ss_pred EEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 010125 482 AIRFATGATLTEKRHVVVAWTVVQQHLEA 510 (517)
Q Consensus 482 ~lR~~~~~~~t~~~di~~l~~~l~~~~~~ 510 (517)
.+|+|+. ..++++||+++++.|+++.++
T Consensus 347 ~iRiS~~-~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 347 GIRASLY-NAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp SEEEECC-TTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHHHH
Confidence 6999995 577888999999999988754
No 65
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=99.92 E-value=4.9e-24 Score=221.59 Aligned_cols=342 Identities=11% Similarity=0.028 Sum_probs=227.7
Q ss_pred hHHHHHHHHHhccccc-ccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHH
Q 010125 106 IAGFLGEMLSSGFNIV-GFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNK 184 (517)
Q Consensus 106 ~~~~~~~~l~~~~n~~-~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~ 184 (517)
++..+.+.+...+... ...|....+..++++.+++++... |.+.. ....++|+|||+|+..++.+..+
T Consensus 72 ~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~-~~~~~-----~~~v~~t~g~t~al~~~~~~l~~----- 140 (427)
T 3dyd_A 72 TDPEVTQAMKDALDSGKYNGYAPSIGFLSSREEIASYYHCP-EAPLE-----AKDVILTSGCSQAIDLCLAVLAN----- 140 (427)
T ss_dssp CCHHHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHHCBT-TBCCC-----GGGEEEESSHHHHHHHHHHHHCC-----
T ss_pred CCHHHHHHHHHHHhcCcCCCCCCCCCcHHHHHHHHHHHhhc-CCCCC-----hHHEEEecCcHHHHHHHHHHhcC-----
Confidence 3455555555554332 335666667788888877777654 43321 12789999999999888777642
Q ss_pred hcccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccc
Q 010125 185 IGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAIT 264 (517)
Q Consensus 185 ~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G 264 (517)
++..|+++.++|..+..+++..|+ +++.+|.++++++.+|+++|++++++.+ .+|+++.++|++|
T Consensus 141 ------~gd~vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~~------~~v~i~~p~nptG 205 (427)
T 3dyd_A 141 ------PGQNILVPRPGFSLYKTLAESMGI---EVKLYNLLPEKSWEIDLKQLEYLIDEKT------ACLIVNNPSNPCG 205 (427)
T ss_dssp ------TTCEEEEEESCCTHHHHHHHHTTC---EEEEEEEEGGGTTEECHHHHHSSCCTTE------EEEEEESSCTTTC
T ss_pred ------CCCEEEEcCCCchhHHHHHHHcCC---EEEEEecccccCCCCCHHHHHHHhccCC------CEEEEECCCCCCC
Confidence 556788889999999999999999 9999998755567899999999986543 3778888999999
Q ss_pred cccC---hhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCC-eeeeccccccCC-CCcceEEEEeCch----
Q 010125 265 AVDP---LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGAD-SFSLNAHKWFFA-TLDCCCLWVKDPR---- 335 (517)
Q Consensus 265 ~idp---l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aD-si~~~~hK~l~~-p~~~g~l~~~~~~---- 335 (517)
.+-| +++|+++|++||+++++|++|+++............--...+ .++.++||.++. ...+|+++++++.
T Consensus 206 ~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G~riG~~~~~~~~~~~~ 285 (427)
T 3dyd_A 206 SVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFG 285 (427)
T ss_dssp CCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGGGCCEEEEEECSTTSSH
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCCCcCcceEEEEecCcchhhH
Confidence 9999 999999999999999999999886543221111111011223 445589998644 4668999988641
Q ss_pred -hHHhhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 010125 336 -ALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFE 414 (517)
Q Consensus 336 -~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~ 414 (517)
.+...+........ .........+..+++....+.+.++.++..++++++.+.|+++|+++
T Consensus 286 ~~i~~~l~~~~~~~~------------------~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~ 347 (427)
T 3dyd_A 286 NEIRDGLVKLSQRIL------------------GPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLR 347 (427)
T ss_dssp HHHHHHHHHHHHHHC------------------CSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHSTTEE
T ss_pred HHHHHHHHHHHhccC------------------CCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 12211110000000 00011223334444444567888999999999999999999999998
Q ss_pred EecCCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHH-hcCcEEEeeeeECCEeEEEEEecCCCCc
Q 010125 415 IVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESIN-ASGKAYMTHAVLGGIYAIRFATGATLTE 493 (517)
Q Consensus 415 l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~g~~~lR~~~~~~~t~ 493 (517)
++.+....++.+.+..... . . .....++.++|. +.|+.+.++..+....++|+++. ++
T Consensus 348 ~~~p~~g~~~~~~l~~~~~-------------~-~----~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~~---~~ 406 (427)
T 3dyd_A 348 PVRPSGAMYLMVGIEMEHF-------------P-E----FENDVEFTERLVAEQSVHCLPATCFEYPNFIRVVIT---VP 406 (427)
T ss_dssp EECCSBTTEEEEEECGGGC-------------T-T----CSSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEESC---SC
T ss_pred ecCCCeeEEEEEecCHhhc-------------C-C----CCCHHHHHHHHHHHCCEEEECCcccCCCCeEEEEEC---CC
Confidence 7644444455555542100 0 0 001234555554 66876655555555678999974 57
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010125 494 KRHVVVAWTVVQQHLEAFQ 512 (517)
Q Consensus 494 ~~di~~l~~~l~~~~~~l~ 512 (517)
+++|++++++|.++.+++.
T Consensus 407 ~e~i~~~l~~l~~~l~~~~ 425 (427)
T 3dyd_A 407 EVMMLEACSRIQEFCEQHY 425 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 8899999999999887653
No 66
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.92 E-value=6e-24 Score=217.63 Aligned_cols=329 Identities=12% Similarity=0.074 Sum_probs=222.0
Q ss_pred HHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCC-ceEEcCCchHHHHHHHHHHHHHHHHHh
Q 010125 107 AGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNG-GGVIQGTTCEAILCTLTAARDRVLNKI 185 (517)
Q Consensus 107 ~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~-~g~~t~ggt~a~~~al~~ar~~~~~~~ 185 (517)
+..+.+.+...++.....|....+..++++++.+|+.+.+|.+.. .. .+++|+|||+|+..++.+...
T Consensus 45 ~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~-----~~~~v~~~~g~~~a~~~~~~~~~~------ 113 (386)
T 1u08_A 45 PRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPD-----ADSDITVTAGATEALYAAITALVR------ 113 (386)
T ss_dssp CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCC-----TTTTEEEESSHHHHHHHHHHHHCC------
T ss_pred CHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCC-----CCCCEEEcCChHHHHHHHHHHhCC------
Confidence 345666666655443345666567889999999999999886532 13 689999999999888776522
Q ss_pred cccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcccc
Q 010125 186 GRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITA 265 (517)
Q Consensus 186 g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~ 265 (517)
+++.|++++++|.++..+++..|+ +++.+|++.+ ++.+|+++|+++++++ +.+|+++.+++++|.
T Consensus 114 -----~gd~vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~~-~~~~d~~~l~~~l~~~------~~~v~l~~p~nptG~ 178 (386)
T 1u08_A 114 -----NGDEVICFDPSYDSYAPAIALSGG---IVKRMALQPP-HFRVDWQEFAALLSER------TRLVILNTPHNPSAT 178 (386)
T ss_dssp -----TTCEEEEEESCCTTHHHHHHHTTC---EEEEEECCTT-TCCCCHHHHHHHCCTT------EEEEEEESSCTTTCC
T ss_pred -----CCCEEEEeCCCchhHHHHHHHcCC---EEEEeecCcc-cCcCCHHHHHHhhccc------CEEEEEeCCCCCCCc
Confidence 456788888999999999999999 9999999753 4789999999998643 347777889999999
Q ss_pred ccC---hhHHHHHHHHhCCeEEcccccccccccCcccccccc--CCCCCCeeeeccccccCCC-CcceEEEEeCchhHHh
Q 010125 266 VDP---LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFID--GVEGADSFSLNAHKWFFAT-LDCCCLWVKDPRALVS 339 (517)
Q Consensus 266 idp---l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~--g~~~aDsi~~~~hK~l~~p-~~~g~l~~~~~~~~~~ 339 (517)
+-| +++|+++|++||+|+|+|++|+.+.+.......... +....|.++.++||+++.| ..+|++++++. . .+
T Consensus 179 ~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~-~-~~ 256 (386)
T 1u08_A 179 VWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAP-I-SA 256 (386)
T ss_dssp CCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCHH-H-HH
T ss_pred cCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccceEEEEcCHH-H-HH
Confidence 865 789999999999999999999876542211111111 1135789999999999733 45899887533 2 22
Q ss_pred hhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC
Q 010125 340 SLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPC 419 (517)
Q Consensus 340 ~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~ 419 (517)
.+.....+.. ++ .+ ......+..+++. +.+.++++.++..++++++.+.|++. ++++..+.
T Consensus 257 ~l~~~~~~~~--------------~~--~~-~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 317 (386)
T 1u08_A 257 EIRKVHQYLT--------------FS--VN-TPAQLALADMLRA-EPEHYLALPDFYRQKRDILVNALNES-RLEILPCE 317 (386)
T ss_dssp HHHHHHHHHT--------------SS--CC-HHHHHHHHHHHHH-CTHHHHTHHHHHHHHHHHHHHHTTSS-SCEECCCC
T ss_pred HHHHHHHhhc--------------cC--CC-hHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCC
Confidence 2211100000 00 00 0111222333432 35677888889999999999999987 88876443
Q ss_pred CeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHH-hcCcEEEeeeeE----CCEeEEEEEecCCCCcH
Q 010125 420 HFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESIN-ASGKAYMTHAVL----GGIYAIRFATGATLTEK 494 (517)
Q Consensus 420 ~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~----~g~~~lR~~~~~~~t~~ 494 (517)
...++++++.... . ....++.++|. +.|+...++..+ .+..++|+++. +++
T Consensus 318 ~g~~~~~~~~~~~----------------~-----~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~---~~~ 373 (386)
T 1u08_A 318 GTYFLLVDYSAVS----------------T-----LDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA---KKE 373 (386)
T ss_dssp BSSEEEEECTTTC----------------C-----SCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC---SCH
T ss_pred ceEEEEEecCCCC----------------C-----CCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEc---CCH
Confidence 3446666664310 0 01245666665 567655443333 24578999985 378
Q ss_pred HHHHHHHHHHHH
Q 010125 495 RHVVVAWTVVQQ 506 (517)
Q Consensus 495 ~di~~l~~~l~~ 506 (517)
++|++++++|.+
T Consensus 374 ~~i~~~~~~l~~ 385 (386)
T 1u08_A 374 STLLAAAERLRQ 385 (386)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhh
Confidence 899999988754
No 67
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.92 E-value=6.2e-24 Score=220.61 Aligned_cols=341 Identities=9% Similarity=0.023 Sum_probs=227.2
Q ss_pred HHHHHHHHHhccccc---ccccccChhhHHHHHHHHHHHHHHcCCC-cccccCCCCceEEcCCchHHHHHHHHHHHHHHH
Q 010125 107 AGFLGEMLSSGFNIV---GFNWISSPAATELENIVMDWLGQMLKLP-KSFLFSGNGGGVIQGTTCEAILCTLTAARDRVL 182 (517)
Q Consensus 107 ~~~~~~~l~~~~n~~---~~~~~~sp~~~~lE~~v~~~l~~l~g~~-~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~ 182 (517)
+..+.+.+...+..+ ...|....+..++++++++|+.+.+|++ ... ...++|+|||+|+..++.+..+
T Consensus 60 ~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~-----~~v~~t~G~~~al~~~~~~l~~--- 131 (425)
T 1vp4_A 60 RKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDE-----DNLIFTVGSQQALDLIGKLFLD--- 131 (425)
T ss_dssp HHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCG-----GGEEEEEHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCc-----ccEEEeccHHHHHHHHHHHhCC---
Confidence 455666666555432 2456555678899999999998888853 111 2689999999999877766532
Q ss_pred HHhcccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhc--CCcceEE-Eeecc
Q 010125 183 NKIGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEV--GLIPLFL-CATIG 259 (517)
Q Consensus 183 ~~~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~--g~~p~~v-v~t~g 259 (517)
+++.|++..++|.++..+++..|+ +++.+|+++ ++ +|+++|+++|++..++ +..+.+| +.+.+
T Consensus 132 --------~gd~Vl~~~p~y~~~~~~~~~~g~---~~~~v~~~~--~~-~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~ 197 (425)
T 1vp4_A 132 --------DESYCVLDDPAYLGAINAFRQYLA---NFVVVPLED--DG-MDLNVLERKLSEFDKNGKIKQVKFIYVVSNF 197 (425)
T ss_dssp --------TTCEEEEEESCCHHHHHHHHTTTC---EEEEEEEET--TE-ECHHHHHHHHHHHHHTTCGGGEEEEEEECSS
T ss_pred --------CCCEEEEeCCCcHHHHHHHHHcCC---EEEEeccCC--CC-CCHHHHHHHHHhhhhcccCCCceEEEECCCC
Confidence 456788888999999999999999 999999875 33 9999999999863211 1123455 57788
Q ss_pred CCccccccC---hhHHHHHHHHhCCeEEcccccccccccCcccccccc-CCCCCCeeeeccccccCCCCcceEEEEeCch
Q 010125 260 TTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFID-GVEGADSFSLNAHKWFFATLDCCCLWVKDPR 335 (517)
Q Consensus 260 tt~~G~idp---l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~-g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~ 335 (517)
+|++|.+-| +++|+++|++||+++++|++|+.+............ +....+.+..+++|+++....+|++++++ +
T Consensus 198 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~-~ 276 (425)
T 1vp4_A 198 HNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLAPGLRIGMVAGSK-E 276 (425)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTCGGGCEEEEECCH-H
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccccccceEEEeeCH-H
Confidence 999999865 678999999999999999999876542211111100 11234577889999998445689998863 3
Q ss_pred hHHhhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHh--c--HHHHHHHHHHHHHHHHHHHHHHhcC-
Q 010125 336 ALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNY--G--VANLRHFLRSHVNMAKLFERLVSGD- 410 (517)
Q Consensus 336 ~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~--g--~~g~~~~i~~~~~~a~~l~~~l~~~- 410 (517)
.. +.+...... ++.. ...+..+++...+ + .+.++++.++..++++++.+.|++.
T Consensus 277 ~~-~~l~~~~~~----------------~~~~----~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 335 (425)
T 1vp4_A 277 FI-RKIVQAKQS----------------ADLC----SPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYF 335 (425)
T ss_dssp HH-HHHHHHHHH----------------HHSS----CCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HH-HHHHHHhhh----------------hcCC----CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 22 222110000 0000 1233444444443 2 3456677778888999999999873
Q ss_pred C---CeEEecCCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeE----CCEeEE
Q 010125 411 K---RFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVL----GGIYAI 483 (517)
Q Consensus 411 ~---~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~----~g~~~l 483 (517)
| +++++.+....++++++... . ...++.+.|.++|+.+.++..+ .+..++
T Consensus 336 ~~~~g~~~~~~~~g~~~~~~~~~~-~----------------------~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~i 392 (425)
T 1vp4_A 336 SDIPGVKWVKSEGGLFIWLTLPEG-F----------------------DTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSM 392 (425)
T ss_dssp TTSTTCEECCCSBSSEEEEECCTT-C----------------------CTTTTHHHHHHHTEECEEGGGGCTTCCCCSEE
T ss_pred CCCCceEEecCCccEEEEEEcCCC-C----------------------CHHHHHHHHHHCCCEEECchhhcCCCCCCCeE
Confidence 5 68876444455666666421 0 0134566666678655444333 135789
Q ss_pred EEEecCCCCcHHHHHHHHHHHHHHHHHHHhhcC
Q 010125 484 RFATGATLTEKRHVVVAWTVVQQHLEAFQSAFK 516 (517)
Q Consensus 484 R~~~~~~~t~~~di~~l~~~l~~~~~~l~~~~~ 516 (517)
|+++.. .+++++++++++|.++.+++.++.+
T Consensus 393 Ris~~~--~~~e~i~~~l~~l~~~l~~~~~~~~ 423 (425)
T 1vp4_A 393 RLSFCL--PPDEKIVEGIKRLREVVLEYGKEKH 423 (425)
T ss_dssp EEECSS--SCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEeCC--CCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999964 2788999999999999988877654
No 68
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.92 E-value=2.8e-23 Score=215.75 Aligned_cols=327 Identities=11% Similarity=0.051 Sum_probs=218.3
Q ss_pred cccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCc
Q 010125 123 FNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTH 202 (517)
Q Consensus 123 ~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H 202 (517)
..|....+..++++.+.+|+.+.+|.+... .....++++|+|+++..++.+.++ +++.|+++.++|
T Consensus 77 ~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~---~~~~i~~~~G~~~ai~~~~~~~~~-----------~gd~Vl~~~p~y 142 (428)
T 1iay_A 77 ANFQDYHGLPEFRKAIAKFMEKTRGGRVRF---DPERVVMAGGATGANETIIFCLAD-----------PGDAFLVPSPYY 142 (428)
T ss_dssp HHCCCTTCCHHHHHHHHHHHHHHTTTCSCC---CTTSCEEEEHHHHHHHHHHHHHCC-----------TTCEEEEESSCC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHhcCCCCCC---ChhhEEEccChHHHHHHHHHHhCC-----------CCCeEEEccCCC
Confidence 345444457899999999999988853100 012689999999999888776542 456788888999
Q ss_pred hHHHHHH-HHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccC---hhHHHHHHHH
Q 010125 203 CALQKAA-QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDP---LKPLCDVAKQ 278 (517)
Q Consensus 203 ~s~~kaa-~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idp---l~eI~~i~~~ 278 (517)
.++...+ ...|+ +++.+|.+.++++.+|+++|++++++..+.+..+.+|+++.+++++|.+.| +++|+++|++
T Consensus 143 ~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~ 219 (428)
T 1iay_A 143 PAFNRDLRWRTGV---QLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQ 219 (428)
T ss_dssp TTHHHHTTTTTCC---EEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHT
T ss_pred cchHHHHHHhcCC---EEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHH
Confidence 9887754 46788 999999875445789999999999875444445667888889999999999 9999999999
Q ss_pred hCCeEEcccccccccccCccccccccCCCC-------CC--eeeeccccccC-CCCcceEEEEeCchhHHhhhcCCcccc
Q 010125 279 FGIWVHVDAAYAGSACICPEFRHFIDGVEG-------AD--SFSLNAHKWFF-ATLDCCCLWVKDPRALVSSLSTNPEYL 348 (517)
Q Consensus 279 ~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~-------aD--si~~~~hK~l~-~p~~~g~l~~~~~~~~~~~~~~~~~yl 348 (517)
||+++|+|++|+++.+..........-... .| .+..++||+++ ....+|++++.++.... .+.....+
T Consensus 220 ~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~-~~~~~~~~- 297 (428)
T 1iay_A 220 HNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVN-CARKMSSF- 297 (428)
T ss_dssp TTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHH-HHHHHHTT-
T ss_pred CCeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEEEecchhhcCCCCceEEEEEeCCHHHHH-HHHHHHhc-
Confidence 999999999998754322111111110112 67 67889999997 44567999886554332 22110000
Q ss_pred CCccccccccccCCCccccCCCCCCchHHHHHHHHhcH-----HHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCeeE
Q 010125 349 KNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGV-----ANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAV 423 (517)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~-----~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~~~~ 423 (517)
++ ...+...++...+.. +.++++.++..++++++.+.|+++ +++++.+...++
T Consensus 298 ---------------~~------~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~ 355 (428)
T 1iay_A 298 ---------------GL------VSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-GIKCLKNNAGLF 355 (428)
T ss_dssp ---------------SC------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBCCCSSSSE
T ss_pred ---------------cc------CCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCCCeeEE
Confidence 00 122333333333322 256677888889999999999887 777653334556
Q ss_pred EEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhc-CcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHH
Q 010125 424 VCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINAS-GKAYMTHAVLG--GIYAIRFATGATLTEKRHVVVA 500 (517)
Q Consensus 424 v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~--g~~~lR~~~~~~~t~~~di~~l 500 (517)
+++++..... ... .....++.++|.++ |+....+..+. +..++|+++. ..++++++++
T Consensus 356 ~~~~~~~~~~-------------~~~----~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~--~~~~e~i~~~ 416 (428)
T 1iay_A 356 CWMDLRPLLR-------------EST----FDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFA--NMDDGTVDIA 416 (428)
T ss_dssp EEEECGGGCS-------------SSS----HHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECS--SSCHHHHHHH
T ss_pred EEEechhhcC-------------CCc----hhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe--cCCHHHHHHH
Confidence 6666643100 000 01234677777766 76544433332 2468999985 3588899999
Q ss_pred HHHHHHHHH
Q 010125 501 WTVVQQHLE 509 (517)
Q Consensus 501 ~~~l~~~~~ 509 (517)
+++|+++.+
T Consensus 417 ~~~l~~~l~ 425 (428)
T 1iay_A 417 LARIRRFVG 425 (428)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988764
No 69
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.92 E-value=1.8e-23 Score=221.74 Aligned_cols=339 Identities=11% Similarity=0.049 Sum_probs=227.9
Q ss_pred cccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCC
Q 010125 121 VGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQ 200 (517)
Q Consensus 121 ~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~ 200 (517)
....|..+++..++++++++|+.+..|++... ...++|+|+|+|+..++.+.... +++.|+++.+
T Consensus 126 ~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~-----~~i~~t~G~~~al~~~~~~l~~~----------~gd~Vlv~~p 190 (500)
T 3tcm_A 126 ATGAYSHSQGIHGLRDAIASGIASRDGFPANA-----DDIFLTDGASPGVHLMMQLLIRN----------EKDGILVPIP 190 (500)
T ss_dssp CSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCG-----GGEEEESSSHHHHHHHHHHHCCS----------TTEEEEEEES
T ss_pred cCCCcCCCcChHHHHHHHHHHHHhhcCCCCCc-----ccEEEcCCHHHHHHHHHHHHcCC----------CCCEEEEeCC
Confidence 45678888889999999999999988865331 37899999999998777665311 5678999999
Q ss_pred CchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcccccc---ChhHHHHHHH
Q 010125 201 THCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVD---PLKPLCDVAK 277 (517)
Q Consensus 201 ~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~id---pl~eI~~i~~ 277 (517)
+|.++..+++..|. +++.+|+++++++.+|+++|+++|++..++|..+.+|+++.++|+||.+- ++++|+++|+
T Consensus 191 ~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~ 267 (500)
T 3tcm_A 191 QYPLYSASIALHGG---ALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCK 267 (500)
T ss_dssp CCTHHHHHHHHTTC---EEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHcCC---EEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHH
Confidence 99999999999999 99999998766789999999999998766666677888889999999984 4777888899
Q ss_pred HhCCeEEcccccccccccCc-cccc---cccCC----CCCCee-eecccccc-C-CCCcceEEEEe--CchhHHhhhcCC
Q 010125 278 QFGIWVHVDAAYAGSACICP-EFRH---FIDGV----EGADSF-SLNAHKWF-F-ATLDCCCLWVK--DPRALVSSLSTN 344 (517)
Q Consensus 278 ~~gi~lhvDaA~g~~~~~~~-~~~~---~~~g~----~~aDsi-~~~~hK~l-~-~p~~~g~l~~~--~~~~~~~~~~~~ 344 (517)
+||+++++|++|+.+.+... .... ....+ ...+.+ ..+++|.+ + ....+|++++. ++.... .+...
T Consensus 268 ~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~-~l~~~ 346 (500)
T 3tcm_A 268 NEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVRE-QIYKI 346 (500)
T ss_dssp HHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHH-HHHHH
T ss_pred HcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHH-HHHHH
Confidence 99999999999987654221 1111 11111 123334 44899998 3 34567888773 333322 22110
Q ss_pred cc-ccCCccccccccccCCCccccCCCCCCchHHHHHHHHhc------------HHHHHHHHHHHHHHHHHHHHHHhcCC
Q 010125 345 PE-YLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYG------------VANLRHFLRSHVNMAKLFERLVSGDK 411 (517)
Q Consensus 345 ~~-yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g------------~~g~~~~i~~~~~~a~~l~~~l~~~~ 411 (517)
.. ++ ++ ..+..+++...+. .+...++.++..++++++.+.|+++|
T Consensus 347 ~~~~~-------------------~~---~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~ 404 (500)
T 3tcm_A 347 ASVNL-------------------CS---NITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLE 404 (500)
T ss_dssp HHTTC-------------------CC---CHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred Hhccc-------------------CC---CHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 00 00 00 1222222222221 13356667788889999999999999
Q ss_pred CeEEecCCCeeEEEEE-ecCCCcchhhhhhhhhccccchHHHH--HHHHHHHHHHHHhcCcEEEeeeeE---CCEeEEEE
Q 010125 412 RFEIVFPCHFAVVCFR-VSPSPVLMDKLKTKYVNCLLSEEEQI--NEFNRELLESINASGKAYMTHAVL---GGIYAIRF 485 (517)
Q Consensus 412 ~~~l~~~~~~~~v~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~g~~~~~~~~~---~g~~~lR~ 485 (517)
++++. +|+.++++|. +..+. ... ...... ......+.+.|.+.|+.++++..+ .+..++|+
T Consensus 405 g~~~~-~~~g~~~~~~~~~lp~--~~~----------~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRi 471 (500)
T 3tcm_A 405 GITCN-EAEGAMYVFPQICLPQ--KAI----------EAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRC 471 (500)
T ss_dssp TEECC-CCCBTTEECCEECCCH--HHH----------HHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEE
T ss_pred CcEEe-cCCeEEEEeeeecCch--hhH----------HHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEE
Confidence 99876 5666666552 32210 000 000000 001111234455678765554332 35678999
Q ss_pred EecCCCCcHHHHHHHHHHHHHHHHHHHhhcC
Q 010125 486 ATGATLTEKRHVVVAWTVVQQHLEAFQSAFK 516 (517)
Q Consensus 486 ~~~~~~t~~~di~~l~~~l~~~~~~l~~~~~ 516 (517)
+++ .+++++++++++|.++.+++.++|+
T Consensus 472 s~~---~~~e~i~~~i~~l~~~~~~~~~~~~ 499 (500)
T 3tcm_A 472 TIL---PQEDKIPAVISRFTVFHEAFMSEYR 499 (500)
T ss_dssp ESC---SCTTTHHHHHHHHHHHHHHHHHHHC
T ss_pred EEC---CCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 985 5677999999999999999888775
No 70
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.92 E-value=3e-24 Score=217.15 Aligned_cols=339 Identities=11% Similarity=0.023 Sum_probs=220.0
Q ss_pred ccceeCCCCCChHHHHHHHHHhccc---cc-cccc---ccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEE-cCCc
Q 010125 95 NYFAYFPSSGSIAGFLGEMLSSGFN---IV-GFNW---ISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVI-QGTT 166 (517)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~n---~~-~~~~---~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~-t~gg 166 (517)
+.+.|.+++...|..+.+.+...+. .| ...+ ..++.+.++-+++++.+++++|.++.. ..+| |+||
T Consensus 5 ~~~~f~pgpt~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~------~v~f~t~~~ 78 (361)
T 3m5u_A 5 RKINFSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDY------EVLFLQGGA 78 (361)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTE------EEEEESSHH
T ss_pred ceEeecCCCCCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCc------eEEEEcCcH
Confidence 3456677776666666665555431 11 1111 124566777788999999999997532 5777 9999
Q ss_pred hHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHh
Q 010125 167 CEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVE 246 (517)
Q Consensus 167 t~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~ 246 (517)
|+++.+++.... . |. ...+|+++..+|..+ +.++..|+ +++.+++++++.+.++++. + |+++++
T Consensus 79 T~a~n~~~~~~~-~-----~~---~~~~i~~~~~~~~~~-~~a~~~G~---~v~~~~~~~~g~~~~~~~~-~--l~~~t~ 142 (361)
T 3m5u_A 79 SLQFAMIPMNLA-L-----NG---VCEYANTGVWTKKAI-KEAQILGV---NVKTVASSEESNFDHIPRV-E--FSDNAD 142 (361)
T ss_dssp HHHHHHHHHHHC-C-----SS---CEEEEECSHHHHHHH-HHHHHTTC---CEEEEEECTTTTSCSCCCC-C--CCTTSS
T ss_pred HHHHHHHHHhcC-C-----CC---eEEEEeCCHHHHHHH-HHHHHcCC---ceEEEecccCcCCCcCChh-h--cCCCCC
Confidence 999988776542 1 11 223566666666544 44566788 9999999864322256655 3 655443
Q ss_pred cCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcc
Q 010125 247 VGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDC 326 (517)
Q Consensus 247 ~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~ 326 (517)
+|.+++.+|.+|.+.|. |++ +|+++|||++++.+....+- ..+|.+++++|||++ |.|+
T Consensus 143 ------lv~~~~~e~~tG~~~~~-----i~~-~~~~~~vD~~q~~g~~~id~--------~~~d~~~~s~~K~~g-p~G~ 201 (361)
T 3m5u_A 143 ------YAYICSNNTIYGTQYQN-----YPK-TKTPLIVDASSDFFSRKVDF--------SNIALFYGGVQKNAG-ISGL 201 (361)
T ss_dssp ------EEEEESEETTTTEECSS-----CCC-CSSCEEEECGGGTTSSCCCC--------TTEEEEEEETTTTSS-CTTC
T ss_pred ------EEEEeCCCCCcceeCCc-----ccc-cCCEEEEEcccccCCCCCCc--------ccCCEEEEechhccC-CCcc
Confidence 78889999999998552 333 49999999999888776542 257899999999995 9999
Q ss_pred eEEEEeCchhHHhhhc-CCccccCCccccccccccCCCccccCCCC-CCchHHHHHHHHhcHH-HHHHHHHHHHHHHHHH
Q 010125 327 CCLWVKDPRALVSSLS-TNPEYLKNKATESMQVVDYKDWQITLSRR-FRSLKLWFVIRNYGVA-NLRHFLRSHVNMAKLF 403 (517)
Q Consensus 327 g~l~~~~~~~~~~~~~-~~~~yl~~~~~~~~~~~~~~~~~~~~sr~-~~al~~~~~l~~~g~~-g~~~~i~~~~~~a~~l 403 (517)
|+++++++.. .+.-. ..+.|+....... ... . ..+-. ...+.+..+++.+-.. |++++.++..++++++
T Consensus 202 g~l~~~~~~~-~~~~~~~~p~~~~~~~~~~---~~~---~-~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l 273 (361)
T 3m5u_A 202 SCIFIRKDML-ERSKNKQIPSMLNYLTHAE---NQS---L-FNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATML 273 (361)
T ss_dssp EEEEEEHHHH-HHHHTCCCCGGGCHHHHHH---TTT---C-SSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred EEEEEcHHHH-hhhcCCCCCceeehHHHhh---cCC---C-CCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 9999987643 11111 2233332110000 000 0 01111 1224566677777666 7999999999999999
Q ss_pred HHHHhcCCCe-EEecCC--C-eeEEEEEecC-CCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeEC
Q 010125 404 ERLVSGDKRF-EIVFPC--H-FAVVCFRVSP-SPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLG 478 (517)
Q Consensus 404 ~~~l~~~~~~-~l~~~~--~-~~~v~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~ 478 (517)
++.|++++++ ++..++ . ..+++|.+.. .. ....+...|.++|+....+ ..
T Consensus 274 ~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~-----------------------~~~~~~~~L~~~gI~~~~g--~~ 328 (361)
T 3m5u_A 274 YECIDLSNGFYKGHADKKDRSLMNVSFNIAKNKD-----------------------LEPLFVKEAEEAGMIGLKG--HR 328 (361)
T ss_dssp HHHHHTSTTSEEESSCGGGBCSSEEEEEESSCTT-----------------------HHHHHHHHHHHTTEECCBC--CT
T ss_pred HHHHHHCCCeeeccCCHHHcCCeEEEEECCCchh-----------------------hhHHHHHHHHHCCCEEecC--CC
Confidence 9999999876 654332 2 3588999864 21 1134566677778653222 11
Q ss_pred CEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 010125 479 GIYAIRFATGATLTEKRHVVVAWTVVQQHLEA 510 (517)
Q Consensus 479 g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~ 510 (517)
....+|+|+++ .++++||+++++.|+++.++
T Consensus 329 ~~g~iRiS~~~-~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 329 ILGGIRASIYN-ALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp TTCSEEEECCT-TSCHHHHHHHHHHHHHHHHH
T ss_pred ccCeEEEEccC-CCCHHHHHHHHHHHHHHHHh
Confidence 22459999964 67888999999999988764
No 71
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.92 E-value=1.4e-23 Score=218.44 Aligned_cols=344 Identities=12% Similarity=0.027 Sum_probs=223.9
Q ss_pred HHHHHHHHHhcccccc-cccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHH--HHHHH
Q 010125 107 AGFLGEMLSSGFNIVG-FNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAAR--DRVLN 183 (517)
Q Consensus 107 ~~~~~~~l~~~~n~~~-~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar--~~~~~ 183 (517)
+..+.+.+...+.... ..|....+..++++.+.+|+.+.+|++... ...++|+|||+|+..++.+.. .
T Consensus 59 ~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~-----~~i~~t~g~t~al~~~~~~l~~~~---- 129 (437)
T 3g0t_A 59 PQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPA-----RACVPTVGSMQGCFVSFLVANRTH---- 129 (437)
T ss_dssp CHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCG-----GGEEEESHHHHHHHHHHHHHTTSC----
T ss_pred CHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCc-----ccEEEeCCHHHHHHHHHHHHhcCC----
Confidence 3444555555554333 456555566899999999999988875331 378999999999988877663 2
Q ss_pred HhcccCCCCe--EEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHH-HhHhcCCcceEEEeeccC
Q 010125 184 KIGRENISKL--IVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQIN-SDVEVGLIPLFLCATIGT 260 (517)
Q Consensus 184 ~~g~~~~~~~--~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~-~~~~~g~~p~~vv~t~gt 260 (517)
+++ .|+++..+|.++..+++..|+ +++.+|+++ +++.+|+++|+++++ .+ +.+|+++.++
T Consensus 130 -------~gd~~~Vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~-~~~~~d~~~l~~~l~~~~------~~~v~l~~p~ 192 (437)
T 3g0t_A 130 -------KNREYGTLFIDPGFNLNKLQCRILGQ---KFESFDLFE-YRGEKLREKLESYLQTGQ------FCSIIYSNPN 192 (437)
T ss_dssp -------TTCSCCEEEEESCCHHHHHHHHHHTC---CCEEEEGGG-GCTTHHHHHHHHHHTTTC------CCEEEEESSC
T ss_pred -------CCCccEEEEeCCCcHhHHHHHHHcCC---EEEEEeecC-CCCccCHHHHHHHHhcCC------ceEEEEeCCC
Confidence 444 677888999999999999999 999999973 356899999999993 32 2367778899
Q ss_pred CccccccC---hhHHHHHHHHhCCeEEcccccccccccCcccc-------ccccCCCCCCeeeeccccccC-CCCcceEE
Q 010125 261 TAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACICPEFR-------HFIDGVEGADSFSLNAHKWFF-ATLDCCCL 329 (517)
Q Consensus 261 t~~G~idp---l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~-------~~~~g~~~aDsi~~~~hK~l~-~p~~~g~l 329 (517)
|++|.+-| +++|+++|++||+++|+|++|+.+.+.....- ..+......+.++.++||+++ .+..+|++
T Consensus 193 nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~ 272 (437)
T 3g0t_A 193 NPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQRIGVL 272 (437)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGGCCEEE
T ss_pred CCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCCccceeEEE
Confidence 99999876 77789999999999999999986544210000 111222355688889999998 55678998
Q ss_pred EEeCchhHHhhhc-CCccccCCcccccccccc-CCCccccCCCCCCchHHHHHHHHhcHH--H---HHHHHHHHHHHHHH
Q 010125 330 WVKDPRALVSSLS-TNPEYLKNKATESMQVVD-YKDWQITLSRRFRSLKLWFVIRNYGVA--N---LRHFLRSHVNMAKL 402 (517)
Q Consensus 330 ~~~~~~~~~~~~~-~~~~yl~~~~~~~~~~~~-~~~~~~~~sr~~~al~~~~~l~~~g~~--g---~~~~i~~~~~~a~~ 402 (517)
++++. ...+.+. ....+..... ... +.......+.....+..+++...+... + ++++.++..+++++
T Consensus 273 ~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 346 (437)
T 3g0t_A 273 MISGK-LYEREYPDLEESFGRLRF-----GEALSSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARI 346 (437)
T ss_dssp EECHH-HHHCBCGGGHHHHSCSBH-----HHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHH
T ss_pred EECHH-Hhhhhhhcccccccccch-----hHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHH
Confidence 88632 2210100 0000000000 000 000000000011233444444444222 2 78888999999999
Q ss_pred HHHHHhcCCCeEEe------cC-CCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeee
Q 010125 403 FERLVSGDKRFEIV------FP-CHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHA 475 (517)
Q Consensus 403 l~~~l~~~~~~~l~------~~-~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~ 475 (517)
+.+.|+++ ++++. .+ ....++.+.+.+.. ..++.++|.++|+...+..
T Consensus 347 l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~l~~~L~~~gi~v~~~~ 401 (437)
T 3g0t_A 347 MKKMFLDN-GFNIVYDKDGNEPLADGFYFTVGYKGMD------------------------SSKLIEKFVRYGMCAITLK 401 (437)
T ss_dssp HHHHHHTT-TEEESSCEETTEECCSSSEEEEEETTCC------------------------HHHHHHHHHHTTEECEEST
T ss_pred HHHHHHHc-CCEEeccccCCCCCceeEEEEEecCCCC------------------------HHHHHHHHHHcCeEEeecc
Confidence 99999998 88887 24 44455666665221 2456777777886544332
Q ss_pred eECC--EeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 010125 476 VLGG--IYAIRFATGATLTEKRHVVVAWTVVQQHLE 509 (517)
Q Consensus 476 ~~~g--~~~lR~~~~~~~t~~~di~~l~~~l~~~~~ 509 (517)
.... ..++|++++ ..+++++++++++|+++.+
T Consensus 402 ~~~~~~~~~iRis~~--~~~~e~i~~~~~~l~~~~~ 435 (437)
T 3g0t_A 402 TTGSKRNEAMRICTS--LLPESQFPDLEKRLQMLNA 435 (437)
T ss_dssp TTTCCCTTCEEEECS--SSCGGGHHHHHHHHHHHHH
T ss_pred ccCCCCCCEEEEEEe--cCCHHHHHHHHHHHHHHHh
Confidence 2211 157999985 3377799999999988765
No 72
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=99.92 E-value=3.6e-24 Score=218.87 Aligned_cols=325 Identities=10% Similarity=0.043 Sum_probs=213.4
Q ss_pred HHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhc
Q 010125 107 AGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIG 186 (517)
Q Consensus 107 ~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g 186 (517)
+..+.+.+...+.. ...|...+...++++.+.+ ++|.+++ .+++|+|||+|+..++.++..
T Consensus 40 ~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~----~~~~~~~-------~v~~~~g~~~a~~~~~~~~~~------- 100 (381)
T 1v2d_A 40 PPFLLEAVRRALGR-QDQYAPPAGLPALREALAE----EFAVEPE-------SVVVTSGATEALYVLLQSLVG------- 100 (381)
T ss_dssp CHHHHHHHHHHTTT-SCSCCCTTCCHHHHHHHHH----HHTSCGG-------GEEEESSHHHHHHHHHHHHCC-------
T ss_pred CHHHHHHHHHHHHH-hcCCCCCCCCHHHHHHHHH----hcCCChh-------hEEEcCChHHHHHHHHHHhCC-------
Confidence 34555666655544 3345554456666665554 4777654 689999999999888876632
Q ss_pred ccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecC--CCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccc
Q 010125 187 RENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTT--KSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAIT 264 (517)
Q Consensus 187 ~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d--~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G 264 (517)
+++.|++++++|.++..+++..|+ +++.+|++ ++ ++.+|+++|+++++++ +.+|+++.++|++|
T Consensus 101 ----~gd~Vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~-~~~~d~~~l~~~l~~~------~~~v~~~~~~nptG 166 (381)
T 1v2d_A 101 ----PGDEVVVLEPFFDVYLPDAFLAGA---KARLVRLDLTPE-GFRLDLSALEKALTPR------TRALLLNTPMNPTG 166 (381)
T ss_dssp ----TTCEEEEEESCCTTHHHHHHHTTC---EEEEEECEEETT-EEECCHHHHHTTCCTT------EEEEEEESSCTTTC
T ss_pred ----CCCEEEEcCCCchhHHHHHHHcCC---EEEEEeCCCCCc-cCCcCHHHHHHhcCcC------CEEEEECCCCCCCC
Confidence 556788888999999999999999 99999986 32 4789999999988643 34778889999999
Q ss_pred cccC---hhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCC-CcceEEEEeCchhHHhh
Q 010125 265 AVDP---LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCCLWVKDPRALVSS 340 (517)
Q Consensus 265 ~idp---l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p-~~~g~l~~~~~~~~~~~ 340 (517)
.+-| +++|+++|++||+++|+|++|+++.+ ............+.|.++.++||+++.| +.+|++++++. .. +.
T Consensus 167 ~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~-~~-~~ 243 (381)
T 1v2d_A 167 LVFGERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKE-FM-PR 243 (381)
T ss_dssp CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTT-TH-HH
T ss_pred CccCHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHhcCCCEEEEeechhhcCCcccceEEEEeCHH-HH-HH
Confidence 9865 89999999999999999999987654 2111111110236889999999999744 45899988543 22 22
Q ss_pred hcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC
Q 010125 341 LSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYG-VANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPC 419 (517)
Q Consensus 341 ~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g-~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~ 419 (517)
+.....+. .++ .+ ......+..+++... .++++++.++..++++++.+.|++. ++++..+.
T Consensus 244 ~~~~~~~~--------------~~~--~~-~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 305 (381)
T 1v2d_A 244 LAGMRQWT--------------SFS--AP-TPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM-GLRVYVPE 305 (381)
T ss_dssp HHHHHHHH--------------TSS--CC-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-TCCEECCS
T ss_pred HHHHHhhc--------------ccC--CC-cHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC-CCEecCCC
Confidence 21100000 000 00 011122223333221 4567888899999999999999885 88877443
Q ss_pred CeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeEC----CEeEEEEEecCCCCcHH
Q 010125 420 HFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLG----GIYAIRFATGATLTEKR 495 (517)
Q Consensus 420 ~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~----g~~~lR~~~~~~~t~~~ 495 (517)
...++++.+... + +.+.+.+.|+...++..+. +..++|+++.. +++
T Consensus 306 ~~~~~~~~~~~~----------------------~-----~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~---~~~ 355 (381)
T 1v2d_A 306 GTYFLMAELPGW----------------------D-----AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK---TEE 355 (381)
T ss_dssp BSSEEEEECTTC----------------------C-----HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS---CHH
T ss_pred cceEEEEecChH----------------------h-----HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC---CHH
Confidence 334555554321 1 4445566786654443332 35689999853 788
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 010125 496 HVVVAWTVVQQHLEAFQSAF 515 (517)
Q Consensus 496 di~~l~~~l~~~~~~l~~~~ 515 (517)
+++++++.|.++.++.....
T Consensus 356 ~i~~~~~~l~~~l~~~r~~~ 375 (381)
T 1v2d_A 356 ELHLALERLGRVVNSPREAE 375 (381)
T ss_dssp HHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHhhccccc
Confidence 99999999999877765543
No 73
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=99.92 E-value=4.1e-23 Score=212.42 Aligned_cols=302 Identities=11% Similarity=0.077 Sum_probs=202.4
Q ss_pred HHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHHc
Q 010125 133 ELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQIV 212 (517)
Q Consensus 133 ~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~~ 212 (517)
....++.+.+++++|.+ . .+++++||+|+..++.+... ++..|+++...|.++..+++..
T Consensus 90 ~~~~~l~~~la~~~g~~-~--------~i~~~sGs~a~~~~~~~~~~-----------~gd~v~~~~~~~~~~~~~~~~~ 149 (401)
T 1fc4_A 90 DSHKELEQKLAAFLGME-D--------AILYSSCFDANGGLFETLLG-----------AEDAIISDALNHASIIDGVRLC 149 (401)
T ss_dssp HHHHHHHHHHHHHHTCS-E--------EEEESCHHHHHHTTHHHHCC-----------TTCEEEEETTCCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhCCC-c--------EEEeCChHHHHHHHHHHHcC-----------CCCEEEEcchhHHHHHHHHHHc
Confidence 34455666777777876 2 35667778898877665422 5567888999999999999999
Q ss_pred CCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEcccccc-c
Q 010125 213 GIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYA-G 291 (517)
Q Consensus 213 G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g-~ 291 (517)
|+ +++.+|. +|+++|++++++....+..+.+|+++.++|++|.+.|+++|.++|++||+++|+|++|+ +
T Consensus 150 g~---~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g 219 (401)
T 1fc4_A 150 KA---KRYRYAN-------NDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVG 219 (401)
T ss_dssp CS---EEEEECT-------TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTT
T ss_pred CC---ceEEECC-------CCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECccccc
Confidence 98 8888863 48999999998654433345688889999999999999999999999999999999996 4
Q ss_pred cccc-CccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCccccCCccccccccccCCCccccCCC
Q 010125 292 SACI-CPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSR 370 (517)
Q Consensus 292 ~~~~-~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr 370 (517)
+... .......+.-..+.|+++.++||+++.+.+ |+++++ ++..........+|.. ..
T Consensus 220 ~~~~~g~~~~~~~~~~~~~di~~~s~sK~~~~~~g-G~~~~~-~~~~~~l~~~~~~~~~-----------------~~-- 278 (401)
T 1fc4_A 220 FVGENGRGSHEYCDVMGRVDIITGTLGKALGGASG-GYTAAR-KEVVEWLRQRSRPYLF-----------------SN-- 278 (401)
T ss_dssp TSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSC-EEEEEC-HHHHHHHHHHCHHHHH-----------------SC--
T ss_pred ccCCCCCccHHHcCCCcCCcEEEecchhhccCCCC-EEEEcC-HHHHHHHHHhCcCcee-----------------CC--
Confidence 4321 111111111112579999999999966665 888774 3332211111111110 00
Q ss_pred CCCchHHHHHHHHhcH-HHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCeeEEEEEecCCCcchhhhhhhhhccccch
Q 010125 371 RFRSLKLWFVIRNYGV-ANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSE 449 (517)
Q Consensus 371 ~~~al~~~~~l~~~g~-~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~ 449 (517)
....+.++++...+.. +..+++.++..++++++.+.|++. +++++ ++..+++++.+..
T Consensus 279 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~------------------- 337 (401)
T 1fc4_A 279 SLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAA-GFTLA-GADHAIIPVMLGD------------------- 337 (401)
T ss_dssp CCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT-TCCBC-CSSSSEEEEEEEC-------------------
T ss_pred CCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCccc-CCCCCEEEEEcCC-------------------
Confidence 1122333333322211 113577888889999999999887 77766 5566777777642
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEeeeeE---CCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 010125 450 EEQINEFNRELLESINASGKAYMTHAVL---GGIYAIRFATGATLTEKRHVVVAWTVVQQHLEAF 511 (517)
Q Consensus 450 ~~~~~~~~~~l~~~l~~~g~~~~~~~~~---~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l 511 (517)
.....++.+.|.++|+........ .+..++|+++. ..++++++++++++|+++.+++
T Consensus 338 ----~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~~~~ 397 (401)
T 1fc4_A 338 ----AVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMS-AAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp ----HHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECC-TTCCHHHHHHHHHHHHHHHHHT
T ss_pred ----hHHHHHHHHHHHHCCcEEeeecCCCCCCCCceEEEEeC-CCCCHHHHHHHHHHHHHHHHHh
Confidence 122456777787788654332211 23568999984 5668889999999999987765
No 74
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=99.92 E-value=2.3e-23 Score=213.69 Aligned_cols=327 Identities=14% Similarity=0.061 Sum_probs=217.7
Q ss_pred HHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhc
Q 010125 107 AGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIG 186 (517)
Q Consensus 107 ~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g 186 (517)
+..+.+.+...+......|....+..++++++.+++.+.+|.+... ...++|+|||+|+..++.+..+
T Consensus 46 ~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~-----~~v~~t~g~~~al~~~~~~l~~------- 113 (391)
T 3h14_A 46 PRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDP-----GRVVITPGSSGGFLLAFTALFD------- 113 (391)
T ss_dssp CHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCG-----GGEEEESSHHHHHHHHHHHHCC-------
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCH-----HHEEEecChHHHHHHHHHHhcC-------
Confidence 3445666666665544566666667899999999999999865331 3789999999999888776532
Q ss_pred ccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 187 RENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 187 ~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
+++.|++..++|.++..+++..|+ +++.+|+++++++.+|+++|+++ + +.+|+++.++|++|.+
T Consensus 114 ----~gd~vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~---~------~~~v~i~~p~nptG~~ 177 (391)
T 3h14_A 114 ----SGDRVGIGAPGYPSYRQILRALGL---VPVDLPTAPENRLQPVPADFAGL---D------LAGLMVASPANPTGTM 177 (391)
T ss_dssp ----TTCEEEEEESCCHHHHHHHHHTTC---EEEEEECCGGGTTSCCHHHHTTS---C------CSEEEEESSCTTTCCC
T ss_pred ----CCCEEEEcCCCCccHHHHHHHcCC---EEEEeecCcccCCCCCHHHHHhc---C------CeEEEECCCCCCCCcc
Confidence 456788888999999999999999 99999998655578999999876 2 3377888999999999
Q ss_pred cC---hhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccC-CCCcceEEEEeCchhHHhhhc
Q 010125 267 DP---LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFF-ATLDCCCLWVKDPRALVSSLS 342 (517)
Q Consensus 267 dp---l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~-~p~~~g~l~~~~~~~~~~~~~ 342 (517)
-| +++|+++|++||+++|+|++|+.+..... ..... .....+.++.+++|+++ .+.++|+++++++ . .+.+.
T Consensus 178 ~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~-~~~~~-~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~-~-~~~~~ 253 (391)
T 3h14_A 178 LDHAAMGALIEAAQAQGASFISDEIYHGIEYEAK-AVTAL-ELTDECYVINSFSKYFSMTGWRVGWMVVPED-Q-VRVVE 253 (391)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC-CCCGG-GTCSSSEEEEESSSTTCCTTSCCEEEECCGG-G-HHHHH
T ss_pred CCHHHHHHHHHHHHHcCCEEEEECcchhcccCCC-CcChh-hcCCCEEEEEechhccCCccceeEEEEeCHH-H-HHHHH
Confidence 77 88999999999999999999987654221 11111 12345577778999997 6677888887544 2 12221
Q ss_pred CCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCe
Q 010125 343 TNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNY-GVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHF 421 (517)
Q Consensus 343 ~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~-g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~~ 421 (517)
....+. + -....+..+++...+ +.+.++++.++..++++++.+.|++. ++..+.++..
T Consensus 254 ~~~~~~----------------~----~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~ 312 (391)
T 3h14_A 254 RIAQNM----------------F----ICAPHASQVAALAALDCDAELQANLDVYKANRKLMLERLPKA-GFTRIAPPDG 312 (391)
T ss_dssp HHHHHT----------------T----CCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-TCCCBCCCCB
T ss_pred HHHhhh----------------c----cCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc-CCCcccCCCe
Confidence 100000 0 001223333333322 56778888899999999999999887 4443334544
Q ss_pred eE-EEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhc-CcEEEeeeeEC---CEeEEEEEecCCCCcHHH
Q 010125 422 AV-VCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINAS-GKAYMTHAVLG---GIYAIRFATGATLTEKRH 496 (517)
Q Consensus 422 ~~-v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~---g~~~lR~~~~~~~t~~~d 496 (517)
+. +.+.+..... ...++.++|.++ |+...++..+. +..++|+++.. ++++
T Consensus 313 ~~~~~~~~~~~~~----------------------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~---~~~~ 367 (391)
T 3h14_A 313 AFYVYADVSDLTD----------------------DSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR---ATAD 367 (391)
T ss_dssp TTEEEEECTTTCS----------------------CHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS---CHHH
T ss_pred eEEEEEecCccCC----------------------CHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC---CHHH
Confidence 43 3344432110 124566666554 86554433332 35789999854 6689
Q ss_pred HHHHHHHHHHHHHHH
Q 010125 497 VVVAWTVVQQHLEAF 511 (517)
Q Consensus 497 i~~l~~~l~~~~~~l 511 (517)
|++++++|.++.++.
T Consensus 368 i~~~l~~l~~~~~~~ 382 (391)
T 3h14_A 368 IEEGLDRLEAFMQAR 382 (391)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887653
No 75
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=99.92 E-value=4.7e-23 Score=215.53 Aligned_cols=338 Identities=11% Similarity=0.067 Sum_probs=225.4
Q ss_pred hHHHHHHHHHhccccc---ccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHH
Q 010125 106 IAGFLGEMLSSGFNIV---GFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVL 182 (517)
Q Consensus 106 ~~~~~~~~l~~~~n~~---~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~ 182 (517)
++..+.+.+...+... ...|....+..++++.+++|+.+.+|.+ +. ..+++|+|+++|+..++.+..+
T Consensus 92 p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~-~~-----~~v~~t~G~~~al~~~~~~l~~--- 162 (448)
T 3aow_A 92 PKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGIS-QD-----NDIMITSGSQQALDLIGRVFLN--- 162 (448)
T ss_dssp CHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCC-TT-----SEEEEESSHHHHHHHHHHHHCC---
T ss_pred CHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcC-Ch-----hhEEEeCcHHHHHHHHHHHHcC---
Confidence 3455566665555432 2456666678899999999998888984 21 2789999999999888776532
Q ss_pred HHhcccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEE-EeeccCC
Q 010125 183 NKIGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFL-CATIGTT 261 (517)
Q Consensus 183 ~~~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~v-v~t~gtt 261 (517)
+++.|++.+++|.++..+++..|+ +++.||+++ + .+|+++|+++++.....+..+.+| +...++|
T Consensus 163 --------~Gd~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~--~-g~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~N 228 (448)
T 3aow_A 163 --------PGDIVVVEAPTYLAALQAFNFYEP---QYIQIPLDD--E-GMKVEILEEKLKELKSQGKKVKVVYTVPTFQN 228 (448)
T ss_dssp --------TTCEEEEEESCCHHHHHHHHTTCC---EEEEEEEET--T-EECHHHHHHHHHHHHHTTCCEEEEEECCSSCT
T ss_pred --------CCCEEEEeCCChHHHHHHHHHcCC---EEEEeccCC--C-CCCHHHHHHHHhhhhccCCCCeEEEECCCCCC
Confidence 556788888999999999999999 999999975 2 399999999997322122234455 5678899
Q ss_pred ccccccC---hhHHHHHHHHhCCeEEcccccccccccCcccccccc-CCCCCCeeeeccccccCCCCcceEEEEeCchhH
Q 010125 262 AITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFID-GVEGADSFSLNAHKWFFATLDCCCLWVKDPRAL 337 (517)
Q Consensus 262 ~~G~idp---l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~-g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~ 337 (517)
++|.+-+ +++|+++|++||+++++|++|+.+.+.......... .....+.+..+++|+++..+.+|++++++ ..
T Consensus 229 PtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~~GlriG~v~~~~-~l- 306 (448)
T 3aow_A 229 PAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILAPGFRIGWMVGDP-GI- 306 (448)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTCGGGCCEEEEECH-HH-
T ss_pred CcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhccccccEEEEEeCH-HH-
Confidence 9999866 679999999999999999999876542211111111 11234567788999998445689998863 22
Q ss_pred HhhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHh--c--HHHHHHHHHHHHHHHHHHHHHHhc-CC-
Q 010125 338 VSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNY--G--VANLRHFLRSHVNMAKLFERLVSG-DK- 411 (517)
Q Consensus 338 ~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~--g--~~g~~~~i~~~~~~a~~l~~~l~~-~~- 411 (517)
.+.+....... +. +. ..+..+++...+ + .+.++++.+++.++++++.+.|++ .|
T Consensus 307 ~~~l~~~~~~~----------------~~-~~---~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 366 (448)
T 3aow_A 307 IRKMEIAKQST----------------DL-CT---NVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPE 366 (448)
T ss_dssp HHHHHHHHHHH----------------HS-SC---CHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHh----------------cC-CC---CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 22221100000 00 01 223333333333 2 344666677777899999999986 57
Q ss_pred CeEEecCCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeE----CCEeEEEEEe
Q 010125 412 RFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVL----GGIYAIRFAT 487 (517)
Q Consensus 412 ~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~----~g~~~lR~~~ 487 (517)
++++..+....++.+++... . ...++.++|.++|+.+.++..+ .+..++|+++
T Consensus 367 g~~~~~p~~g~~~~v~~~~~-~----------------------~~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls~ 423 (448)
T 3aow_A 367 GVKWTKPEGGMFIWVTLPDG-I----------------------DSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNF 423 (448)
T ss_dssp TCEECCCSBSSEEEEECSTT-C----------------------CHHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEEC
T ss_pred CeEEeCCCccEEEEEEcCCC-C----------------------CHHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEEe
Confidence 68876443444556665321 0 1245677777788766554433 2457899998
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHh
Q 010125 488 GATLTEKRHVVVAWTVVQQHLEAFQS 513 (517)
Q Consensus 488 ~~~~t~~~di~~l~~~l~~~~~~l~~ 513 (517)
.. .++++|++++++|.++.++..+
T Consensus 424 ~~--~~~e~i~~~~~~L~~~l~~~~~ 447 (448)
T 3aow_A 424 TY--VDEDKIMEGIKRLAETIKEELK 447 (448)
T ss_dssp SS--SCTHHHHHHHHHHHHHHHHHHC
T ss_pred CC--CCHHHHHHHHHHHHHHHHHHHh
Confidence 54 3677999999999998876543
No 76
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.92 E-value=8.6e-24 Score=215.19 Aligned_cols=334 Identities=11% Similarity=0.038 Sum_probs=210.8
Q ss_pred HHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhc
Q 010125 107 AGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIG 186 (517)
Q Consensus 107 ~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g 186 (517)
+..+.+.+...+... .+..++...+ +.+.+++++|.+ .+++|+|||+|+..++.+++..
T Consensus 12 ~~~v~~a~~~~~~~~--~~~~~~~~~~----l~~~la~~~~~~---------~v~~~~ggt~al~~~~~~~~~~------ 70 (375)
T 2fnu_A 12 DKEDKKAVLEVLNSK--QLTQGKRSLL----FEEALCEFLGVK---------HALVFNSATSALLTLYRNFSEF------ 70 (375)
T ss_dssp CHHHHHHHHHHHTSS--CCSSSHHHHH----HHHHHHHHHTCS---------EEEEESCHHHHHHHHHHHSSCC------
T ss_pred CHHHHHHHHHHHHcC--cccCChHHHH----HHHHHHHHhCCC---------eEEEeCCHHHHHHHHHHHhccc------
Confidence 334455555555332 1223444444 445566667765 4799999999998888776210
Q ss_pred ccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 187 RENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 187 ~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
. .+++.|+++..+|.++..++...|+ +++.+|++++ +.+|+++|++++++++ .+|+.+.+ +|.+
T Consensus 71 ~--~~gd~Vl~~~~~~~~~~~~~~~~g~---~~~~~~~~~~--~~~d~~~l~~~i~~~~------~~v~~~~~---tG~~ 134 (375)
T 2fnu_A 71 S--ADRNEIITTPISFVATANMLLESGY---TPVFAGIKND--GNIDELALEKLINERT------KAIVSVDY---AGKS 134 (375)
T ss_dssp C--TTSCEEEECSSSCTHHHHHHHHTTC---EEEECCBCTT--SSBCGGGSGGGCCTTE------EEEEEECG---GGCC
T ss_pred C--CCCCEEEECCCccHhHHHHHHHCCC---EEEEeccCCC--CCCCHHHHHhhcCcCc------eEEEEeCC---cCCc
Confidence 0 1556799999999999999999999 9999999753 4899999998886543 25555554 8999
Q ss_pred cChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeC-chhHHhhhcCCc
Q 010125 267 DPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKD-PRALVSSLSTNP 345 (517)
Q Consensus 267 dpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~-~~~~~~~~~~~~ 345 (517)
.|+++|.++|++||+++|+|++|+.+..... . .+.....+++.++++||+++ | |+|++++++ ++... .+..
T Consensus 135 ~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~--~-~~~~~~~i~~~s~s~~K~~~-~-g~g~~~~~~~~~~~~-~~~~-- 206 (375)
T 2fnu_A 135 VEVESVQKLCKKHSLSFLSDSSHALGSEYQN--K-KVGGFALASVFSFHAIKPIT-T-AEGGAVVTNDSELHE-KMKL-- 206 (375)
T ss_dssp CCHHHHHHHHHHHTCEEEEECTTCTTCEETT--E-ETTSSSSEEEEECCTTSSSC-C-SSCEEEEESCHHHHH-HHHH--
T ss_pred cCHHHHHHHHHHcCCEEEEECccccCCeECC--e-eccccCCeEEEeCCCCCCcc-c-cCceEEEeCCHHHHH-HHHH--
Confidence 9999999999999999999999987654321 1 12222246667788889994 4 788888853 43322 2210
Q ss_pred cccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-----C
Q 010125 346 EYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPC-----H 420 (517)
Q Consensus 346 ~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~-----~ 420 (517)
+......+ .....+. ....+.++....+.+++.....++++++.++..++++++.+.|+++|++++..++ .
T Consensus 207 -~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 282 (375)
T 2fnu_A 207 -FRSHGMLK-KDFFEGE--VKSIGHNFRLNEIQSALGLSQLKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSS 282 (375)
T ss_dssp -HTBTTEEE-SSSSCEE--ESSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCC
T ss_pred -HHhcCCcc-ccccccc--cccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcc
Confidence 10000000 0000000 0011112223333344433345678889999999999999999999899886431 1
Q ss_pred eeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeee-------EC--------------C
Q 010125 421 FAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAV-------LG--------------G 479 (517)
Q Consensus 421 ~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-------~~--------------g 479 (517)
..++.+.+.... . ....++.+.|.++|+....... +. +
T Consensus 283 ~~~~~~~~~~~~-----------------~----~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 341 (375)
T 2fnu_A 283 NHLYPILMHQKF-----------------F----TCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFY 341 (375)
T ss_dssp CSCEEEEECGGG-----------------G----GGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHH
T ss_pred eEEEEEEeCccc-----------------c----chHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHH
Confidence 223345553210 0 0134567777777764321100 00 1
Q ss_pred EeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 010125 480 IYAIRFATGATLTEKRHVVVAWTVVQQHLEAF 511 (517)
Q Consensus 480 ~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l 511 (517)
..++|+++ ++.++++|+++++++|+++.+++
T Consensus 342 ~~~lRi~~-~~~~t~~~i~~~~~~l~~~~~~~ 372 (375)
T 2fnu_A 342 HAEISLPC-HANLNLESVQNIAHSVLKTFESF 372 (375)
T ss_dssp HHEEEECC-CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred hCEEEecC-CCCCCHHHHHHHHHHHHHHHHHh
Confidence 25799998 56778889999999999887654
No 77
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=99.92 E-value=2.1e-23 Score=214.44 Aligned_cols=302 Identities=11% Similarity=0.031 Sum_probs=210.6
Q ss_pred hhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHH
Q 010125 129 PAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKA 208 (517)
Q Consensus 129 p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~ka 208 (517)
.+...+.+++.+++++++|.+ .+++|+|||+|+..++.++.+ +++.|++++++|.++..+
T Consensus 84 ~g~~~~~~~l~~~la~~~g~~---------~v~~~~ggt~a~~~~~~~~~~-----------~gd~V~~~~p~~~~~~~~ 143 (398)
T 3a2b_A 84 NGTLDIHVELEEKLSAYVGKE---------AAILFSTGFQSNLGPLSCLMG-----------RNDYILLDERDHASIIDG 143 (398)
T ss_dssp TCCCHHHHHHHHHHHHHHTCS---------EEEEESSHHHHHHHHHHHSSC-----------TTCEEEEETTCCHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHhCCC---------cEEEECCHHHHHHHHHHHHhC-----------CCCEEEECCccCHHHHHH
Confidence 345677888999999999864 579999999999888776532 566788999999999999
Q ss_pred HHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEcccc
Q 010125 209 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAA 288 (517)
Q Consensus 209 a~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA 288 (517)
++..|. +++.+|+ +|+++|++++++... + .+.+|+.+.+++++|.+.|+++|.++|++||+++|+|++
T Consensus 144 ~~~~g~---~~~~v~~-------~d~~~l~~~l~~~~~-~-~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~ 211 (398)
T 3a2b_A 144 SRLSFS---KVIKYGH-------NNMEDLRAKLSRLPE-D-SAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDA 211 (398)
T ss_dssp HHHSSS---EEEEECT-------TCHHHHHHHHHTSCS-S-SCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECT
T ss_pred HHHcCC---ceEEeCC-------CCHHHHHHHHHhhcc-C-CceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECC
Confidence 999999 8888875 589999999976321 1 345788888999999999999999999999999999999
Q ss_pred cccccccCccccccc--cCC-CCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcC-CccccCCccccccccccCCCc
Q 010125 289 YAGSACICPEFRHFI--DGV-EGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLST-NPEYLKNKATESMQVVDYKDW 364 (517)
Q Consensus 289 ~g~~~~~~~~~~~~~--~g~-~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~-~~~yl~~~~~~~~~~~~~~~~ 364 (517)
|+.+.+. ....... .++ +++|+++.++||+++ |.| |+++++ +... +.+.. ...+...
T Consensus 212 ~~~~~~~-~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~G-G~~~~~-~~~~-~~l~~~~~~~~~~-------------- 272 (398)
T 3a2b_A 212 HSLGVIG-HKGAGTASHFGLNDDVDLIMGTFSKSLA-SLG-GFVAGD-ADVI-DFLKHNARSVMFS-------------- 272 (398)
T ss_dssp TTTTTSS-GGGCCHHHHHTCGGGCSEEEEESSSTTC-SSC-EEEEEC-HHHH-HHHHHHCHHHHSS--------------
T ss_pred CcccccC-CCCCchHhhcCCCcCCeEEEeccccccc-CCC-cEEEeC-HHHH-HHHHHhcccceec--------------
Confidence 9766431 1111111 122 247999999999998 555 888775 3322 22211 1111110
Q ss_pred cccCCCCCCch-HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCeeEEEEEecCCCcchhhhhhhhh
Q 010125 365 QITLSRRFRSL-KLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYV 443 (517)
Q Consensus 365 ~~~~sr~~~al-~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~ 443 (517)
++...... .+..+++.+ +.++++.++..++++++.+.|++. ++++. ++..+++++.+..
T Consensus 273 ---~~~~~~~~a~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~g~~~~~~~~~------------- 332 (398)
T 3a2b_A 273 ---ASMTPASVASTLKALEII--QNEPEHIEKLWKNTDYAKAQLLDH-GFDLG-ATESPILPIFIRS------------- 332 (398)
T ss_dssp ---BCCCHHHHHHHHHHHHHH--HHCTHHHHHHHHHHHHHHHHHHHT-TCCBC-SCCSSEEEEECCC-------------
T ss_pred ---CCCCHHHHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHHHhc-CCCcC-CCCCCEEEEEcCC-------------
Confidence 00011111 223444432 334577888889999999999887 77765 4556666666532
Q ss_pred ccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeE---CCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 010125 444 NCLLSEEEQINEFNRELLESINASGKAYMTHAVL---GGIYAIRFATGATLTEKRHVVVAWTVVQQHLEAFQ 512 (517)
Q Consensus 444 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~---~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l~ 512 (517)
+....++.+.|.++|+...+...+ .+..++|+++. ..++++++++++++|+++.+++.
T Consensus 333 ----------~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRis~~-~~~~~e~i~~~~~~l~~~l~~~~ 393 (398)
T 3a2b_A 333 ----------NEKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSLM-ATHTYDQIDEAIEKMVKVFKQAE 393 (398)
T ss_dssp ----------HHHHHHHHHHHHHTTEECEEECTTTSCGGGCEEEEECC-TTCCHHHHHHHHHHHHHHHHHCC
T ss_pred ----------HHHHHHHHHHHHHCCcEEEeeCCCCCCCCCceEEEEEe-CCCCHHHHHHHHHHHHHHHHHhC
Confidence 122456778888888654433322 13568999985 45688899999999999877653
No 78
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.92 E-value=4.9e-23 Score=211.01 Aligned_cols=332 Identities=12% Similarity=0.085 Sum_probs=212.3
Q ss_pred HHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhccc
Q 010125 109 FLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRE 188 (517)
Q Consensus 109 ~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~ 188 (517)
.+.+.+...+......|..++...++|+. +++++|.+. .+++++||+|+..++.+.+-
T Consensus 18 ~~~~a~~~~l~~~~~~~~~~~~~~~l~~~----la~~~~~~~---------~i~~~sGt~al~~~l~~l~~--------- 75 (388)
T 1b9h_A 18 AERNGLVRALEQGQWWRMGGDEVNSFERE----FAAHHGAAH---------ALAVTNGTHALELALQVMGV--------- 75 (388)
T ss_dssp HHHHHHHHHHHTSCCBTTTCSHHHHHHHH----HHHHTTCSE---------EEEESCHHHHHHHHHHHTTC---------
T ss_pred HHHHHHHHHHHcCCeeecCCHHHHHHHHH----HHHHhCCCe---------EEEeCCHHHHHHHHHHHcCC---------
Confidence 34444444443322345555666666655 455556542 34555569999888876521
Q ss_pred CCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccC
Q 010125 189 NISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDP 268 (517)
Q Consensus 189 ~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idp 268 (517)
.+++.|+++..+|.++..+++..|+ +++.+|++++ ++.+|+++|+++|+++++ +|+ +++++|.+.|
T Consensus 76 -~~gd~Vi~~~~~~~~~~~~~~~~g~---~~~~v~~~~~-~~~~d~~~l~~~i~~~~~------~v~---~~n~tG~~~~ 141 (388)
T 1b9h_A 76 -GPGTEVIVPAFTFISSSQAAQRLGA---VTVPVDVDAA-TYNLDPEAVAAAVTPRTK------VIM---PVHMAGLMAD 141 (388)
T ss_dssp -CTTCEEEEESSSCTHHHHHHHHTTC---EEEEECBCTT-TCCBCHHHHHHHCCTTEE------EEC---CBCGGGCCCC
T ss_pred -CCcCEEEECCCccHHHHHHHHHcCC---EEEEEecCCC-cCCCCHHHHHHhcCcCce------EEE---EeCCccCcCC
Confidence 1556788999999999999999999 9999999863 478999999999965432 444 7888999999
Q ss_pred hhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchh--HHhhhcCCcc
Q 010125 269 LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRA--LVSSLSTNPE 346 (517)
Q Consensus 269 l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~--~~~~~~~~~~ 346 (517)
+++|+++|++||+++|+|++|+.+...... . +..+..+++.+++.||+++.+ .+|++++++... +....... .
T Consensus 142 l~~i~~la~~~~~~li~D~a~~~g~~~~~~--~-~~~~~~i~~~S~s~~K~l~g~-~~G~~~~~~~~~~~~~~~~~~~-~ 216 (388)
T 1b9h_A 142 MDALAKISADTGVPLLQDAAHAHGARWQGK--R-VGELDSIATFSFQNGKLMTAG-EGGAVVFPDGETEKYETAFLRH-S 216 (388)
T ss_dssp HHHHHHHHHHHTCCBCEECTTCTTCEETTE--E-GGGSSSCEEEECCTTSSSCSS-SCEEEEECTTCHHHHHHHHHHT-B
T ss_pred HHHHHHHHHHcCCEEEEecchhcCCccCCe--e-cccccceEEEEccCCCcccCC-CeEEEEECCHHHHHHHHHHHHH-h
Confidence 999999999999999999999865433111 1 122224777888899999765 568887776533 22221111 0
Q ss_pred ccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC-----CC-
Q 010125 347 YLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFP-----CH- 420 (517)
Q Consensus 347 yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~-----~~- 420 (517)
+ ... .....+.......+.+...+.+++... +.+.+++++++..++++++.+.|+++|++++..+ +.
T Consensus 217 ~-~~~----~~~~~~~~~~~g~~~~~~~~~~a~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~ 289 (388)
T 1b9h_A 217 C-GRP----RDDRRYFHKIAGSNMRLNEFSASVLRA--QLARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNS 289 (388)
T ss_dssp T-TCC----TTCSSCCCCSCCCBCBCBHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCC
T ss_pred C-CCC----ccCccceeecccccCCcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccc
Confidence 0 000 000001000111111233344444333 3455777888888999999999999889987642 22
Q ss_pred eeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeE--C--------------------
Q 010125 421 FAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVL--G-------------------- 478 (517)
Q Consensus 421 ~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~--~-------------------- 478 (517)
.++++|++.... .....++.+.|.++|+........ .
T Consensus 290 ~~~~~~~~~~~~---------------------~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (388)
T 1b9h_A 290 HYMAMFRIPGLT---------------------EERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARR 348 (388)
T ss_dssp CSEEEEECTTCC---------------------HHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHT
T ss_pred eEEEEEEeCCcC---------------------cccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccC
Confidence 457777775320 112356777787888754332110 0
Q ss_pred -------CEeEEEEEecCCCC-cHHHHHHHHHHHHHHHHH
Q 010125 479 -------GIYAIRFATGATLT-EKRHVVVAWTVVQQHLEA 510 (517)
Q Consensus 479 -------g~~~lR~~~~~~~t-~~~di~~l~~~l~~~~~~ 510 (517)
....||+++ ++.+ +++||+++++.|+++.++
T Consensus 349 ~~~~~~~~~~~l~l~~-~~~~~t~edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 349 CPNTDAISSDCVWLHH-RVLLAGEPELHATAEIIADAVAR 387 (388)
T ss_dssp CHHHHHHHHHEEEEEG-GGGGSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCeEEecC-CCCCCCHHHHHHHHHHHHHHHhh
Confidence 023699998 4566 899999999999987653
No 79
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.92 E-value=5.4e-24 Score=219.96 Aligned_cols=334 Identities=11% Similarity=0.043 Sum_probs=224.7
Q ss_pred HHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCC-ceEEcCCchHHHHHHHHHHHHHHHHHhc
Q 010125 108 GFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNG-GGVIQGTTCEAILCTLTAARDRVLNKIG 186 (517)
Q Consensus 108 ~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~-~g~~t~ggt~a~~~al~~ar~~~~~~~g 186 (517)
..+.+.+...++.....|....+..++++++++|+.+.+|.+.. .. .+++|+|||+|+..++.+..+
T Consensus 41 ~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~-----~~~~v~~t~g~~~al~~~~~~~~~------- 108 (411)
T 2o0r_A 41 PKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYD-----PETEVLVTVGATEAIAAAVLGLVE------- 108 (411)
T ss_dssp HHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCC-----TTTSEEEEEHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCC-----CCceEEEeCCHHHHHHHHHHHhcC-------
Confidence 44556666555443345666666789999999999999986532 12 589999999999888776532
Q ss_pred ccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCC-CCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcccc
Q 010125 187 RENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKS-SSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITA 265 (517)
Q Consensus 187 ~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~-~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~ 265 (517)
+++.|+++.++|.++..+++..|+ +++.+|++.+ +++.+|+++|+++++++ +.+|+++.++|++|.
T Consensus 109 ----~gd~Vl~~~~~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~~d~~~l~~~l~~~------~~~v~l~~~~nptG~ 175 (411)
T 2o0r_A 109 ----PGSEVLLIEPFYDSYSPVVAMAGA---HRVTVPLVPDGRGFALDADALRRAVTPR------TRALIINSPHNPTGA 175 (411)
T ss_dssp ----TTCEEEEEESCCTTHHHHHHHTTC---EEEEEECEEETTEEECCHHHHHHHCCTT------EEEEEEESSCTTTCC
T ss_pred ----CCCEEEEeCCCcHhHHHHHHHcCC---EEEEeeccccccCCCCCHHHHHHhhccC------ceEEEEeCCCCCCCC
Confidence 456788888999999999999999 9999998752 24679999999998643 347777889999999
Q ss_pred ccC---hhHHHHHHHHhCCeEEcccccccccccCcccccc--ccCCCCCCeeeeccccccCCC-CcceEEEEeCchhHHh
Q 010125 266 VDP---LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHF--IDGVEGADSFSLNAHKWFFAT-LDCCCLWVKDPRALVS 339 (517)
Q Consensus 266 idp---l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~--~~g~~~aDsi~~~~hK~l~~p-~~~g~l~~~~~~~~~~ 339 (517)
+-| +++|+++|++||+++++|++|+.+.+........ +.+....|.++.++||+++.| ..+|+++++ +... +
T Consensus 176 ~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~~-~ 253 (411)
T 2o0r_A 176 VLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWACGP-AELI-A 253 (411)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEEECC-HHHH-H
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceEEEEeeC-HHHH-H
Confidence 865 5999999999999999999998765422111111 112236789999999999733 458998875 3322 2
Q ss_pred hhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC
Q 010125 340 SLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPC 419 (517)
Q Consensus 340 ~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~ 419 (517)
.+.....+. .++ . .......+..+++. +.+.++++.++..++++++.+.|++. ++++.. +
T Consensus 254 ~l~~~~~~~--------------~~~--~-~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~ 313 (411)
T 2o0r_A 254 GVRAAKQYL--------------SYV--G-GAPFQPAVALALDT-EDAWVAALRNSLRARRDRLAAGLTEI-GFAVHD-S 313 (411)
T ss_dssp HHHHHHHHH--------------TSC--C-CTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHH-TCEECC-C
T ss_pred HHHHHHhhc--------------cCC--C-ChHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHHc-CCEecC-C
Confidence 221110000 000 0 01122233344443 36678888899999999999999887 788764 4
Q ss_pred Cee-EEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHH-hcCcEEEeeeeE---C----------CEeEEE
Q 010125 420 HFA-VVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESIN-ASGKAYMTHAVL---G----------GIYAIR 484 (517)
Q Consensus 420 ~~~-~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~---~----------g~~~lR 484 (517)
..+ ++++.+.... .....++.++|. +.|+...++..+ . +..++|
T Consensus 314 ~~g~~~~~~~~~~~---------------------~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iR 372 (411)
T 2o0r_A 314 YGTYFLCADPRPLG---------------------YDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVR 372 (411)
T ss_dssp CBSSEEEEECGGGT---------------------CCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEE
T ss_pred CeeEEEEEecCCCC---------------------CCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEE
Confidence 444 5666664310 000245566655 568655443332 1 346899
Q ss_pred EEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 010125 485 FATGATLTEKRHVVVAWTVVQQHLEAFQ 512 (517)
Q Consensus 485 ~~~~~~~t~~~di~~l~~~l~~~~~~l~ 512 (517)
+++.+ ++++++++++.|.++.++..
T Consensus 373 is~~~---~~e~i~~~~~~l~~~~~~~~ 397 (411)
T 2o0r_A 373 FTFCK---RDDTLDEAIRRLSVLAERPA 397 (411)
T ss_dssp EECCS---CHHHHHHHHHHHGGGGC---
T ss_pred EEecC---CHHHHHHHHHHHHHHHhccC
Confidence 99852 67899999999988765543
No 80
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.92 E-value=1.7e-23 Score=214.03 Aligned_cols=325 Identities=9% Similarity=0.032 Sum_probs=211.2
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHH--
Q 010125 128 SPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCAL-- 205 (517)
Q Consensus 128 sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~-- 205 (517)
++...++.+++++++++++|.+. ..+||+|||+|+..++... . +++.|++++..|++.
T Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~--------~v~~~~sgt~a~~~~~~~~-----~-------~gd~vi~~~~~~~~~~~ 89 (379)
T 3ke3_A 30 SKAFQEVMNDLLSNLKTVYNAEA--------AVIIPGSGTYGMEAVARQL-----T-------IDEDCLIIRNGWFSYRW 89 (379)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCSE--------EEEEESCHHHHHHHHHHHH-----C-------TTCEEEEEECSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCC--------EEEEcCChhHHHHHHHHhC-----C-------CCCeEEEEeCCchhHHH
Confidence 66777888899999999999873 5789999999998765322 1 445677777788764
Q ss_pred HHHHHHcCCCCCCEEEEecCCCC------C-cccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccC---hhHHHHH
Q 010125 206 QKAAQIVGIDVKNFRAIKTTKSS------S-YGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDP---LKPLCDV 275 (517)
Q Consensus 206 ~kaa~~~G~g~~~v~~vp~d~~~------~-~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idp---l~eI~~i 275 (517)
...++..|++. +++.++.+..+ . +.+|+++|+++|++.. +.+|++++.+|++|.+.| +++|+++
T Consensus 90 ~~~~~~~g~~~-~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~-----~~~v~~~~~~~~~G~~~~~~~l~~i~~~ 163 (379)
T 3ke3_A 90 TQILEKGKFAK-SSTVLTAERTEDTEAPKPFAPVDIETAVAKIKEDK-----SAIVYAPHVETSSGIILSEEYIKALSEA 163 (379)
T ss_dssp HHHHHHHCCSS-EEEEEECEESSCCSSCCCEECCCHHHHHHHHHHHT-----CSEEEEESEETTTTEECCHHHHHHHHHH
T ss_pred HHHHHHhCCCC-ceEEEeccccccccccCCCCCCCHHHHHHHHhhcC-----CcEEEEEeecCCCceeCCHHHHHHHHHH
Confidence 34555666522 57778764310 1 2689999999996431 237888999999999999 9999999
Q ss_pred HHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhc-CCccccCCccc-
Q 010125 276 AKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLS-TNPEYLKNKAT- 353 (517)
Q Consensus 276 ~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~-~~~~yl~~~~~- 353 (517)
|++||+++|+|++++ +....+ ... .++|.+++++|||+++|.|+|++++++... ..... ...++..+...
T Consensus 164 ~~~~~~~li~D~~~~-g~~~~~-~~~-----~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~-~~l~~~~~~~~~~~~~~~ 235 (379)
T 3ke3_A 164 VHSVGGLLVIDCIAS-GCVWLD-MKE-----LGIDVLISAPQKGWSSTPCAGLVMLSAAAI-KKVESTESNCFSLDLKQW 235 (379)
T ss_dssp HHHTTCEEEEECTTC-TTCCCC-HHH-----HTCSEEEECTTTTTCSCCCEEEEEECHHHH-HHHHTCCCSCSTTCHHHH
T ss_pred HHHcCCEEEEEeccc-CCcccc-ccc-----cCCCEEEecchhhcCCCCceEEEEECHHHH-HhhhcCCCCceeecHHHH
Confidence 999999999999997 433222 111 168999999999999999999999876532 21111 11222211000
Q ss_pred -cccccccCCCccccCCCC-CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC--CeeEEEEEec
Q 010125 354 -ESMQVVDYKDWQITLSRR-FRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPC--HFAVVCFRVS 429 (517)
Q Consensus 354 -~~~~~~~~~~~~~~~sr~-~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~--~~~~v~f~~~ 429 (517)
........+......+.. ....++.++++.+..+|++++.++..++++++++.|+++ +++++.++ .++++.....
T Consensus 236 ~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~-g~~~~~~~~~~~~~i~~~~~ 314 (379)
T 3ke3_A 236 LTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDK-GIESVAAEGFEAPGVVVSYT 314 (379)
T ss_dssp HHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSBCTTCBCSSEEEEEC
T ss_pred HHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCEecCCccccCceEEEEcc
Confidence 000000000000001111 111244466666667788999999999999999999987 78876543 2444433222
Q ss_pred CCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeee-----ECCEeEEEEEecCCCCcHHHHHHHHHHH
Q 010125 430 PSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAV-----LGGIYAIRFATGATLTEKRHVVVAWTVV 504 (517)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-----~~g~~~lR~~~~~~~t~~~di~~l~~~l 504 (517)
+. .. ..+.+.|.++|+...++.. ..+..++|++++. .++++||++++++|
T Consensus 315 ~~----------------------~~--~~~~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~-~~t~~di~~~~~~l 369 (379)
T 3ke3_A 315 ER----------------------DD--MHKGSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFG-LDKLTDIDGTVERF 369 (379)
T ss_dssp SC----------------------HH--HHSSHHHHHTTCCCEECCCCSSCCCTTCCEEEEECCS-HHHHTCHHHHHHHH
T ss_pred CC----------------------cc--hHHHHHHHHCCeEEeCCccccccccCcCCEEEEeCCc-CCCHHHHHHHHHHH
Confidence 22 01 1124556677875433221 1225689999864 56888999999999
Q ss_pred HHHHHHHH
Q 010125 505 QQHLEAFQ 512 (517)
Q Consensus 505 ~~~~~~l~ 512 (517)
+++.+++.
T Consensus 370 ~~~l~~~~ 377 (379)
T 3ke3_A 370 EKALDEVL 377 (379)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99988765
No 81
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.92 E-value=5.4e-24 Score=217.00 Aligned_cols=312 Identities=11% Similarity=0.085 Sum_probs=210.5
Q ss_pred cccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCC
Q 010125 121 VGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQ 200 (517)
Q Consensus 121 ~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~ 200 (517)
....|...++..++++.+.+|+. +.+++ ..++|+|||+|+..++.+..+ +++.|++..+
T Consensus 55 ~~~~y~~~~g~~~l~~~la~~~~---~~~~~-------~v~~~~g~~~a~~~~~~~l~~-----------~gd~Vl~~~~ 113 (375)
T 3op7_A 55 TKLNYGWIEGSPAFKKSVSQLYT---GVKPE-------QILQTNGATGANLLVLYSLIE-----------PGDHVISLYP 113 (375)
T ss_dssp SCCSSCCTTCCHHHHHHHHTTSS---SCCGG-------GEEEESHHHHHHHHHHHHHCC-----------TTCEEEEEES
T ss_pred CCcCCCCCCChHHHHHHHHHHhc---cCChh-------hEEEcCChHHHHHHHHHHhcC-----------CCCEEEEeCC
Confidence 33455556667777777666542 34443 689999999999888876532 5667888899
Q ss_pred CchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccC---hhHHHHHHH
Q 010125 201 THCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDP---LKPLCDVAK 277 (517)
Q Consensus 201 ~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idp---l~eI~~i~~ 277 (517)
+|.++..+++..|. +++.+|++.++++.+|+++|++++++++ .+|+++.+++++|.+.| +++|+++|+
T Consensus 114 ~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~~------~~v~~~~~~nptG~~~~~~~l~~i~~la~ 184 (375)
T 3op7_A 114 TYQQLYDIPKSLGA---EVDLWQIEEENGWLPDLEKLRQLIRPTT------KMICINNANNPTGAVMDRTYLEELVEIAS 184 (375)
T ss_dssp SCTHHHHHHHHTTC---EEEEEEEEGGGTTEECHHHHHHHCCTTC------CEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred CchhHHHHHHHcCC---EEEEEeccccCCCCCCHHHHHHhhccCC------eEEEEcCCCCCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999 9999998754567899999999997543 37788889999999999 999999999
Q ss_pred HhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccC-CCCcceEEEEeCchhHHhhhcCCccccCCcccccc
Q 010125 278 QFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFF-ATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESM 356 (517)
Q Consensus 278 ~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~-~p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~ 356 (517)
+||+++++|++|+.+... ...... .....+.+..+++|+++ .+..+|++++ +++.. +.+.....+.
T Consensus 185 ~~~~~li~De~~~~~~~~--~~~~~~-~~~~~~i~~~s~sK~~~~~G~r~G~v~~-~~~l~-~~~~~~~~~~-------- 251 (375)
T 3op7_A 185 EVGAYILSDEVYRSFSEL--DVPSII-EVYDKGIAVNSLSKTYSLPGIRIGWVAA-NHQVT-DILRDYRDYT-------- 251 (375)
T ss_dssp TTTCEEEEECCSCCCSSS--CCCCHH-HHCTTEEEEEESSSSSSCGGGCCEEEEC-CHHHH-HHHTTTGGGT--------
T ss_pred HcCCEEEEEccccccccc--CCCchh-hhcCCEEEEeEChhhcCCcccceEEEEe-CHHHH-HHHHHHHhhh--------
Confidence 999999999999876542 111111 11244577888999997 4466788887 44332 3332211110
Q ss_pred ccccCCCccccCCCCCCchHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCeeEEEEEecCCCcc
Q 010125 357 QVVDYKDWQITLSRRFRSLKLWFVIRNY--GVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSPSPVL 434 (517)
Q Consensus 357 ~~~~~~~~~~~~sr~~~al~~~~~l~~~--g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~~~~v~f~~~~~~~~ 434 (517)
+. ....+..+++...+ ..+.++++.++..++++++.+.|++.+++++..+.....+.+.+....
T Consensus 252 --------~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-- 317 (375)
T 3op7_A 252 --------MI----CAGVFDDLVAQLALAHYQEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDM-- 317 (375)
T ss_dssp --------TS----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSS--
T ss_pred --------cc----CCCcHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCC--
Confidence 00 01223333333222 234556667777889999999999888998764433333334443210
Q ss_pred hhhhhhhhhccccchHHHHHHHHHHHHHHH-HhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHHh
Q 010125 435 MDKLKTKYVNCLLSEEEQINEFNRELLESI-NASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHLEAFQS 513 (517)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l~~ 513 (517)
...++.+++ .+.|+...++..+....++|++++. ..+++++++++|.++.+++.+
T Consensus 318 ---------------------~~~~~~~~ll~~~gi~v~~g~~~~~~~~iRi~~~~---~~~~i~~~l~~l~~~l~~~~~ 373 (375)
T 3op7_A 318 ---------------------PMEDFCLQLLQEHGVLLVPGNRFERDGYVRLGFAC---EQETLIKGLEKLSQFLRRFDK 373 (375)
T ss_dssp ---------------------CHHHHHHHHHHHHCEECEEGGGGTCTTEEEECCCS---CHHHHHHHHHHHHHHHGGGC-
T ss_pred ---------------------CHHHHHHHHHHhCCEEEeChhhhCCCCeEEEEecC---CHHHHHHHHHHHHHHHHHHhh
Confidence 023455555 4678765555444445789999853 347999999999988776543
No 82
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.91 E-value=1.7e-23 Score=216.51 Aligned_cols=345 Identities=12% Similarity=0.060 Sum_probs=224.0
Q ss_pred HHHHHHHHHhccccc-ccccccChhhHHHHHHHHHHHHHH------cCCCcccccCCCCceEEcCCchHHHHHHHHHHHH
Q 010125 107 AGFLGEMLSSGFNIV-GFNWISSPAATELENIVMDWLGQM------LKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARD 179 (517)
Q Consensus 107 ~~~~~~~l~~~~n~~-~~~~~~sp~~~~lE~~v~~~l~~l------~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~ 179 (517)
+..+.+.+...+... ...|....+..++++.+++|+.+. .|++.. ...+++|+|||+|+..++.+..+
T Consensus 52 ~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~-----~~~v~~~~g~~~al~~~~~~l~~ 126 (416)
T 1bw0_A 52 SAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIV-----KDNVVLCSGGSHGILMAITAICD 126 (416)
T ss_dssp CHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCC-----GGGEEEESHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCC-----cceEEEeCChHHHHHHHHHHhCC
Confidence 344555555444322 235555556788999999999843 333211 12689999999999887776532
Q ss_pred HHHHHhcccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeecc
Q 010125 180 RVLNKIGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIG 259 (517)
Q Consensus 180 ~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~g 259 (517)
+++.|+++.++|.++..+++..|+ +++.+|+++++++.+|+++|++++++.+ .+|+++.+
T Consensus 127 -----------~gd~vl~~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~~------~~v~i~~p 186 (416)
T 1bw0_A 127 -----------AGDYALVPQPGFPHYETVCKAYGI---GMHFYNCRPENDWEADLDEIRRLKDDKT------KLLIVTNP 186 (416)
T ss_dssp -----------TTCEEEEEESCCTHHHHHHHHTTC---EEEEEEEEGGGTTEECHHHHHHHCCTTE------EEEEEESS
T ss_pred -----------CCCEEEEcCCCcHhHHHHHHHcCc---EEEEeecCcccCCCCCHHHHHHHhccCC------eEEEEeCC
Confidence 456788888999999999999999 9999998754346899999999987543 36777789
Q ss_pred CCccccccC---hhHHHHHHHHhCCeEEcccccccccccCc----cccccccCCCC--CCeeeeccccccCCC-CcceEE
Q 010125 260 TTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACICP----EFRHFIDGVEG--ADSFSLNAHKWFFAT-LDCCCL 329 (517)
Q Consensus 260 tt~~G~idp---l~eI~~i~~~~gi~lhvDaA~g~~~~~~~----~~~~~~~g~~~--aDsi~~~~hK~l~~p-~~~g~l 329 (517)
+|++|.+.| +++|+++|++||+++++|++|+.+.+... .... +..+.. .+.++.++||+++.| ..+|++
T Consensus 187 ~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~Glr~G~~ 265 (416)
T 1bw0_A 187 SNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTS-VADFETTVPRVILGGTAKNLVVPGWRLGWL 265 (416)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCC-TTSSCCSCCEEEEEESTTTTSCGGGCCEEE
T ss_pred CCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccC-HHHccCCCcEEEEecchhhCCCCCceEEEE
Confidence 999999988 99999999999999999999987543221 1111 122221 135667899998655 568999
Q ss_pred EEeCc-hhHHhhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHh
Q 010125 330 WVKDP-RALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVS 408 (517)
Q Consensus 330 ~~~~~-~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~ 408 (517)
+++++ ............+ ... +. .........+..+++....++++++.++..++++++.+.|+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~-~~~-------------~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 330 (416)
T 1bw0_A 266 LYVDPHGNGPSFLEGLKRV-GML-------------VC-GPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIG 330 (416)
T ss_dssp EEECTTCSCHHHHHHHHHH-HHH-------------HT-CSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EeeCchhhHHHHHHHHHHH-hcc-------------cc-CCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98775 2211110000000 000 00 00001122333344433467788899999999999999999
Q ss_pred cCCCeEEecCCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHH-HhcCcEEEeeeeECCEeEEEEEe
Q 010125 409 GDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESI-NASGKAYMTHAVLGGIYAIRFAT 487 (517)
Q Consensus 409 ~~~~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~g~~~~~~~~~~g~~~lR~~~ 487 (517)
++|+++++.+...+.+.+++..... . . .....++.+.| .+.|+.+.++..+....++|+++
T Consensus 331 ~~~g~~~~~~~~~~~~~~~~~~~~~-------------~-~----~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~ 392 (416)
T 1bw0_A 331 ECIGLAPTMPRGAMYLMSRIDLEKY-------------R-D----IKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTT 392 (416)
T ss_dssp TSTTEEECCCCBTTEEEEEECGGGB-------------S-S----CCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEEC
T ss_pred hCCCCcccCCCeeEEEEEeCCHHHc-------------C-C----CCCHHHHHHHHHHHCCEEEecccccCCCCeEEEEe
Confidence 8889987644334555666542100 0 0 00124555665 36787655544443346899998
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHh
Q 010125 488 GATLTEKRHVVVAWTVVQQHLEAFQS 513 (517)
Q Consensus 488 ~~~~t~~~di~~l~~~l~~~~~~l~~ 513 (517)
. +++++++++++.|.++.++..+
T Consensus 393 ~---~~~e~l~~~l~~l~~~l~~~~~ 415 (416)
T 1bw0_A 393 T---RPVEVYREAVERIKAFCQRHAA 415 (416)
T ss_dssp C---SCHHHHHHHHHHHHHHHHHHBC
T ss_pred c---CCHHHHHHHHHHHHHHHHHhhc
Confidence 3 4688999999999988776543
No 83
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.91 E-value=1.1e-23 Score=215.78 Aligned_cols=325 Identities=13% Similarity=0.072 Sum_probs=216.9
Q ss_pred HHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcc
Q 010125 108 GFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGR 187 (517)
Q Consensus 108 ~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~ 187 (517)
..+.+.+...+......|....+..++++++.+|+.+..|.+.+. ...++|+||++|+..++.+..+
T Consensus 47 ~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~-----~~i~~t~g~~~al~~~~~~l~~-------- 113 (385)
T 1b5p_A 47 EHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTP-----EETIVTVGGSQALFNLFQAILD-------- 113 (385)
T ss_dssp HHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCG-----GGEEEESHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCh-----HHEEEcCChHHHHHHHHHHhcC--------
Confidence 344455544443333356555567899999999999988864221 2689999999999887766532
Q ss_pred cCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcccccc
Q 010125 188 ENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVD 267 (517)
Q Consensus 188 ~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~id 267 (517)
+++.|+++.++|.++..+++..|+ +++.+|+++++++.+|+++|++++++.+ .+|+++.++|+||.+-
T Consensus 114 ---~gd~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~~------~~v~~~~p~NPtG~~~ 181 (385)
T 1b5p_A 114 ---PGDEVIVLSPYWVSYPEMVRFAGG---VVVEVETLPEEGFVPDPERVRRAITPRT------KALVVNSPNNPTGAVY 181 (385)
T ss_dssp ---TTCEEEEEESCCTHHHHHHHHTTC---EEEEEECCGGGTTCCCHHHHHTTCCTTE------EEEEEESSCTTTCCCC
T ss_pred ---CCCEEEEcCCCchhHHHHHHHcCC---EEEEeecCcccCCCCCHHHHHHhcCCCC------EEEEEeCCCCCCCCCc
Confidence 556788888999999999999999 9999999753357899999999886543 3678888999999985
Q ss_pred C---hhHHHHHHHHhCCeEEcccccccccccCccccccccCCC-CCCeeeeccccccCCC-CcceEEEEeCchhHHhhhc
Q 010125 268 P---LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE-GADSFSLNAHKWFFAT-LDCCCLWVKDPRALVSSLS 342 (517)
Q Consensus 268 p---l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~-~aDsi~~~~hK~l~~p-~~~g~l~~~~~~~~~~~~~ 342 (517)
+ +++|+++|++||+++++|++|+.+.... ..... ..+. ..+.+..+++|+++.| ..+|++++++ ... +.+.
T Consensus 182 ~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~-~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~-~~~-~~l~ 257 (385)
T 1b5p_A 182 PKEVLEALARLAVEHDFYLVSDEIYEHLLYEG-EHFSP-GRVAPEHTLTVNGAAKAFAMTGWRIGYACGPK-EVI-KAMA 257 (385)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS-CCCCG-GGTCTTTEEEEEESTTTTTCGGGCCEEEECCH-HHH-HHHH
T ss_pred CHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCCH-HHcCCCCEEEEEechhhcCCcccceEEEEeCH-HHH-HHHH
Confidence 5 9999999999999999999998754321 11111 1111 3456778899999744 5589988753 222 2221
Q ss_pred CCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHh-----cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec
Q 010125 343 TNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNY-----GVANLRHFLRSHVNMAKLFERLVSGDKRFEIVF 417 (517)
Q Consensus 343 ~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~-----g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~ 417 (517)
....+. ......+..+++...+ +.+.++++.++..++++++.+.|+++ ++++.
T Consensus 258 ~~~~~~--------------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~- 315 (385)
T 1b5p_A 258 SVSRQS--------------------TTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL-GLKAV- 315 (385)
T ss_dssp HHHHTT--------------------TCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC-
T ss_pred HHHhhc--------------------cCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC-CCeec-
Confidence 100000 0011223333333333 34557778888888999999999887 77765
Q ss_pred CCCeeEEEE-EecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHH
Q 010125 418 PCHFAVVCF-RVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRH 496 (517)
Q Consensus 418 ~~~~~~v~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~d 496 (517)
+|+.+.+.+ .+...+ ....++.+.|.+.|+.+.++..+....++|++++ +++++
T Consensus 316 ~~~~~~~~~~~~~~~~----------------------~~~~~l~~~l~~~gv~v~~g~~f~~~~~iRis~~---~~~~~ 370 (385)
T 1b5p_A 316 RPSGAFYVLMDTSPIA----------------------PDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYA---TSEEN 370 (385)
T ss_dssp CCSBTTEEEEECTTTC----------------------SSHHHHHHHHHHTTEECEESGGGTCTTEEEEECC---SCHHH
T ss_pred CCCeeEEEEEecCCCC----------------------CCHHHHHHHHHHCCeEEecccccCCCCeEEEEec---CCHHH
Confidence 444443333 442111 0124566777777876554443332458999985 57778
Q ss_pred HHHHHHHHHHHH
Q 010125 497 VVVAWTVVQQHL 508 (517)
Q Consensus 497 i~~l~~~l~~~~ 508 (517)
++++++.|.++.
T Consensus 371 i~~~l~~l~~~l 382 (385)
T 1b5p_A 371 LRKALERFARVL 382 (385)
T ss_dssp HHHHHHHGGGGC
T ss_pred HHHHHHHHHHHH
Confidence 999998887654
No 84
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.91 E-value=3.5e-24 Score=226.15 Aligned_cols=346 Identities=12% Similarity=0.037 Sum_probs=212.7
Q ss_pred hHHHHHHHHHhcccc-cc------cccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHH
Q 010125 106 IAGFLGEMLSSGFNI-VG------FNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAAR 178 (517)
Q Consensus 106 ~~~~~~~~l~~~~n~-~~------~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar 178 (517)
.+..+.+.+.+.+.. .. ..|..++...++|+.+++++++++|.+.+. ....+++++|+.+|+.++.+..
T Consensus 56 ~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~----~~~~V~~~sGs~an~~~~~all 131 (483)
T 1rv3_A 56 ASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQC----WGVNVQPYSGSPANFAVYTALV 131 (483)
T ss_dssp CCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTT----EEEECCCSSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCccc----CceEEEECCcHHHHHHHHHHhc
Confidence 344556666555532 21 234556678899999999999999997531 0012444445588877666542
Q ss_pred HHHHHHhcccCCCCeEEEeCCCCchHHHH--------HHHHcCCCCCCEEEEec--CCCCCcccCHHHHHHHHHHhHhcC
Q 010125 179 DRVLNKIGRENISKLIVYGSDQTHCALQK--------AAQIVGIDVKNFRAIKT--TKSSSYGLSPDSLMAQINSDVEVG 248 (517)
Q Consensus 179 ~~~~~~~g~~~~~~~~v~~s~~~H~s~~k--------aa~~~G~g~~~v~~vp~--d~~~~~~~d~~~Le~~i~~~~~~g 248 (517)
+ +++.|++++.+|.++.. .+...|. .++.++. ++ +++.+|+++|++++++..
T Consensus 132 ~-----------pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~---~~~~v~~~~~~-~~~~iD~d~le~~i~~~~--- 193 (483)
T 1rv3_A 132 E-----------PHGRIMGLDLPDGGHLTHGFMTDKKKISATSI---FFESMAYKVNP-DTGYIDYDRLEENARLFH--- 193 (483)
T ss_dssp C-----------TTCEEEEECGGGTCCGGGCCBCSSCBCSHHHH---HSEEEEECBCT-TTCSBCHHHHHHHHHHHC---
T ss_pred C-----------CCCEEEEecCccCcCcchhhhhcccCcccccc---eEEEEECcccc-CCCcCCHHHHHHHHhhcC---
Confidence 2 66778888888876543 3344453 2445544 53 358999999999998321
Q ss_pred CcceEEEeeccCCccccccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceE
Q 010125 249 LIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCC 328 (517)
Q Consensus 249 ~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~ 328 (517)
|.+|++ .+++++ .+.|+++|+++|++||+++|+|+||+.+.......... +..+|++++++||+|.+|.+ |+
T Consensus 194 --tklIi~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p---~~~~div~~s~~K~l~Gprg-G~ 265 (483)
T 1rv3_A 194 --PKLIIA-GTSCYS-RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSP---FEHCHVVTTTTHKTLRGCRA-GM 265 (483)
T ss_dssp --CSEEEE-CCSSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCG---GGTCSEEEEESSGGGCCCSC-EE
T ss_pred --CcEEEE-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCC---CCCCcEEEecCcccCCCCCc-eE
Confidence 336666 666666 88999999999999999999999997655433222221 23689999999999988887 99
Q ss_pred EEEeCchhHHhhh-cCCccccCCccccccccccCCCccccCCCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 010125 329 LWVKDPRALVSSL-STNPEYLKNKATESMQVVDYKDWQITLSRRF-RSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERL 406 (517)
Q Consensus 329 l~~~~~~~~~~~~-~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~-~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~ 406 (517)
+++++........ .....|-..... . ..... ..+++... ...++..+++.....+++++.++..++++++.+.
T Consensus 266 i~~~~~~~~~~~~~g~~~~y~~~~~~---~-~~~~~-~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (483)
T 1rv3_A 266 IFYRRGVRSVDPKTGKEILYNLESLI---N-SAVFP-GLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAA 340 (483)
T ss_dssp EEEECSBCC-------CCBCCHHHHH---H-HHHTT-TTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcchhhhhccccCcchhhHHHHHh---h-hhcCC-cccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHH
Confidence 9998752100000 000000000000 0 00000 01111111 1234455676666678899999999999999999
Q ss_pred HhcCCCeEEecCC-CeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEe---eee--ECCE
Q 010125 407 VSGDKRFEIVFPC-HFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMT---HAV--LGGI 480 (517)
Q Consensus 407 l~~~~~~~l~~~~-~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~---~~~--~~g~ 480 (517)
|++. +++++.+. ....+.+.+.+.+. ....+.+.|.+.|+.... +.. ..+.
T Consensus 341 L~~~-g~~~~~~~~~~~~~~v~~~~~g~----------------------~~~~~~~~L~~~gI~v~~~~~pg~~~~~~~ 397 (483)
T 1rv3_A 341 LVEL-GYKIVTGGSDNHLILVDLRSKGT----------------------DGGRAEKVLEACSIACNKNTCPGDKSALRP 397 (483)
T ss_dssp HHHT-TCEEGGGSCSSSEEEEEGGGGTC----------------------CHHHHHHHHHHTTEECEEECCSSCSCTTSC
T ss_pred HHhc-CCEeccCCCCCceEEEeccCCCC----------------------CHHHHHHHHHhCCcEEecCCCCCCCcCCCC
Confidence 9988 89987542 22334444432210 023345556667764431 211 1235
Q ss_pred eEEEEEecCCCCc----HHHHHHHHHHHHHHHHH
Q 010125 481 YAIRFATGATLTE----KRHVVVAWTVVQQHLEA 510 (517)
Q Consensus 481 ~~lR~~~~~~~t~----~~di~~l~~~l~~~~~~ 510 (517)
.++|+++. ..++ ++|++++++.|.++.+.
T Consensus 398 ~~iRis~~-~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 398 SGLRLGTP-ALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp CEEEEECH-HHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred ceEEeecC-CcccCCCCHHHHHHHHHHHHHHHHh
Confidence 68999985 3445 88999999999988764
No 85
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=99.91 E-value=3.9e-23 Score=212.50 Aligned_cols=327 Identities=12% Similarity=0.084 Sum_probs=216.4
Q ss_pred HHHHHHHHHhccccc---ccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHH
Q 010125 107 AGFLGEMLSSGFNIV---GFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLN 183 (517)
Q Consensus 107 ~~~~~~~l~~~~n~~---~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~ 183 (517)
+..+.+.+...+... ...|...++..++++.+.+|+ |.+++ ..++|+|+++|+..++.+..+
T Consensus 49 ~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~----g~~~~-------~v~~~~g~~~al~~~~~~~~~---- 113 (397)
T 2zyj_A 49 KEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAEWI----GVRPE-------EVLITTGSQQALDLVGKVFLD---- 113 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHH----TSCGG-------GEEEESHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHHHHh----CCChh-------hEEEeccHHHHHHHHHHHhCC----
Confidence 455666665555332 235555456777777777666 65544 689999999999877776532
Q ss_pred HhcccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHH-hHhcCCcceEEEeeccCCc
Q 010125 184 KIGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINS-DVEVGLIPLFLCATIGTTA 262 (517)
Q Consensus 184 ~~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~-~~~~g~~p~~vv~t~gtt~ 262 (517)
+++.|++..++|.++..+++..|. +++.+|.++ ++ +|+++|++++++ +++ .+++.+.++++
T Consensus 114 -------~gd~Vl~~~p~y~~~~~~~~~~g~---~~~~~~~~~--~~-~d~~~l~~~l~~~~~~-----~v~~~~~~~np 175 (397)
T 2zyj_A 114 -------EGSPVLLEAPSYMGAIQAFRLQGP---RFLTVPAGE--EG-PDLDALEEVLKRERPR-----FLYLIPSFQNP 175 (397)
T ss_dssp -------TTCEEEEEESCCHHHHHHHHTTCC---EEEEEEEET--TE-ECHHHHHHHHHHCCCS-----CEEECCBSCTT
T ss_pred -------CCCEEEEeCCCcHHHHHHHHHcCC---EEEecCcCC--CC-CCHHHHHHHHhhcCCe-----EEEECCCCcCC
Confidence 456688888999999999999999 999999875 33 999999999976 222 23357788999
Q ss_pred cccccCh---hHHHHHHHHhCCeEEcccccccccccCcccccccc-CCC---CCCeeeeccccccCCCCcceEEEEeCch
Q 010125 263 ITAVDPL---KPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFID-GVE---GADSFSLNAHKWFFATLDCCCLWVKDPR 335 (517)
Q Consensus 263 ~G~idpl---~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~-g~~---~aDsi~~~~hK~l~~p~~~g~l~~~~~~ 335 (517)
+|.+-|. ++|+++|++||+++++|++|+.+............ +.. ....++.++||+++....+|++++++ +
T Consensus 176 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~-~ 254 (397)
T 2zyj_A 176 TGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPGLRVAFAVAHP-E 254 (397)
T ss_dssp TCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGGGCCEEEECCH-H
T ss_pred CCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEecccccccccceeEEEecCH-H
Confidence 9998765 48999999999999999999886542211111110 011 12367788999999446789998863 2
Q ss_pred hHHhhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHh--cH-HHHHHHHHHHHHHHHHHHHHHhc-CC
Q 010125 336 ALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNY--GV-ANLRHFLRSHVNMAKLFERLVSG-DK 411 (517)
Q Consensus 336 ~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~--g~-~g~~~~i~~~~~~a~~l~~~l~~-~~ 411 (517)
. .+.+....... +.. + ..+..+++...+ +. +.++++.++..++++++.+.|++ .|
T Consensus 255 ~-~~~l~~~~~~~----------------~~~-~---~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 313 (397)
T 2zyj_A 255 A-LQKLVQAKQGA----------------DLH-T---PMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVP 313 (397)
T ss_dssp H-HHHHHHHHHHH----------------HSS-C---CHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred H-HHHHHHHHHhh----------------cCC-C---CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 2 22221100000 000 0 223333333333 22 45677778888899999999986 57
Q ss_pred -CeEEecCCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeEC----CEeEEEEE
Q 010125 412 -RFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLG----GIYAIRFA 486 (517)
Q Consensus 412 -~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~----g~~~lR~~ 486 (517)
++++..+....++++.+... ....++.++|.++|+.+.++..+. +..++|++
T Consensus 314 ~g~~~~~~~~g~~~~~~~~~~-----------------------~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis 370 (397)
T 2zyj_A 314 KEVRYTRPKGGMFVWMELPKG-----------------------LSAEGLFRRALEENVAFVPGGPFFANGGGENTLRLS 370 (397)
T ss_dssp TTSEECCCSBSSEEEEECSTT-----------------------CCHHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEE
T ss_pred CCeEEccCCccEEEEEEcCCC-----------------------CCHHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEE
Confidence 58876444455666666421 013467777777887655443331 35689999
Q ss_pred ecCCCCcHHHHHHHHHHHHHHHHHHHh
Q 010125 487 TGATLTEKRHVVVAWTVVQQHLEAFQS 513 (517)
Q Consensus 487 ~~~~~t~~~di~~l~~~l~~~~~~l~~ 513 (517)
+... +++++++++++|.++.+++.+
T Consensus 371 ~~~~--~~~~i~~~~~~l~~~l~~~~~ 395 (397)
T 2zyj_A 371 YATL--DREGIAEGVRRLGRALKGLLA 395 (397)
T ss_dssp CSSS--CHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCC--CHHHHHHHHHHHHHHHHHHHh
Confidence 9643 788999999999999877654
No 86
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=99.91 E-value=2.3e-22 Score=203.94 Aligned_cols=310 Identities=12% Similarity=0.064 Sum_probs=212.6
Q ss_pred HHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhc
Q 010125 107 AGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIG 186 (517)
Q Consensus 107 ~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g 186 (517)
+..+.+.+...+.. ...| ..+... ++++++++++|.+++ ..++|+|||+|+..++.+...
T Consensus 47 ~~~v~~a~~~~~~~-~~~y-~~~~~~----~lr~~la~~~~~~~~-------~v~~~~g~t~a~~~~~~~~~~------- 106 (363)
T 3ffh_A 47 SKKVAAIQANSSVE-TEIY-PDGWAS----SLRKEVADFYQLEEE-------ELIFTAGVDELIELLTRVLLD------- 106 (363)
T ss_dssp CHHHHHHHHTCBSC-CCBC-----CH----HHHHHHHHHHTCCGG-------GEEEESSHHHHHHHHHHHHCS-------
T ss_pred CHHHHHHHHHHHHH-hhcC-CCcchH----HHHHHHHHHhCCChh-------hEEEeCCHHHHHHHHHHHHcc-------
Confidence 44555666665532 2233 223333 445667777787655 689999999999888776522
Q ss_pred ccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 187 RENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 187 ~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
++..|+++..+|.++..+++..|+ +++.+|.++ ++.+|+++|++++++++ .+|+++.+++++|.+
T Consensus 107 ----~gd~vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~i~~~~------~~v~~~~p~nptG~~ 171 (363)
T 3ffh_A 107 ----TTTNTVMATPTFVQYRQNALIEGA---EVREIPLLQ--DGEHDLEGMLNAIDEKT------TIVWICNPNNPTGNY 171 (363)
T ss_dssp ----TTCEEEEEESSCHHHHHHHHHHTC---EEEEEECCT--TSCCCHHHHHHHCCTTE------EEEEEESSCTTTCCC
T ss_pred ----CCCEEEEcCCChHHHHHHHHHcCC---EEEEecCCC--CCCcCHHHHHHhcccCC------CEEEEeCCCCCcCCC
Confidence 455788888999999999999999 999999985 57999999999997543 478888999999999
Q ss_pred cChhHHHHHHHHh--CCeEEcccccccccccCcccccccc--CCCCCCeeeeccccccC-CCCcceEEEEeCchhHHhhh
Q 010125 267 DPLKPLCDVAKQF--GIWVHVDAAYAGSACICPEFRHFID--GVEGADSFSLNAHKWFF-ATLDCCCLWVKDPRALVSSL 341 (517)
Q Consensus 267 dpl~eI~~i~~~~--gi~lhvDaA~g~~~~~~~~~~~~~~--g~~~aDsi~~~~hK~l~-~p~~~g~l~~~~~~~~~~~~ 341 (517)
.|+++|.++|+.+ |+++|+|++|+.+.. . ....... .....+.+..+++|+++ .+.++|+++++ ++... .+
T Consensus 172 ~~~~~l~~l~~~~~~~~~li~De~~~~~~~-~-~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~-~l 247 (363)
T 3ffh_A 172 IELADIQAFLDRVPSDVLVVLDEAYIEYVT-P-QPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIAD-KEIIR-QL 247 (363)
T ss_dssp CCHHHHHHHHTTSCTTSEEEEECTTGGGCS-S-CCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEEC-HHHHH-HH
T ss_pred cCHHHHHHHHHhCCCCcEEEEeCchHhhcC-c-cccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecC-HHHHH-HH
Confidence 9999999999988 999999999986654 1 1111111 11223366778999997 44566998883 33322 22
Q ss_pred cCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCC
Q 010125 342 STNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNY-GVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCH 420 (517)
Q Consensus 342 ~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~-g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~ 420 (517)
..... .+ ....+..+++...+ ..+.++++.++..++++++.+.|++.+++++. ++.
T Consensus 248 ~~~~~----------------~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~ 304 (363)
T 3ffh_A 248 NIVRP----------------PF------NTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFAKRFEKVKLY-PAN 304 (363)
T ss_dssp HHTCC----------------SC------CCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEC-CCC
T ss_pred HHhCC----------------CC------CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhCCCceEC-CCC
Confidence 11100 00 11233334444333 23667888889999999999999987789876 555
Q ss_pred eeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHH
Q 010125 421 FAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVA 500 (517)
Q Consensus 421 ~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l 500 (517)
.+++.+.+... ..++.+.|.++|+...++..+....++|+++. +++|++++
T Consensus 305 ~~~~~~~~~~~-------------------------~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~----~~~~i~~~ 355 (363)
T 3ffh_A 305 GNFVLIDLGIE-------------------------AGTIFSYLEKNGYITRSGAALGFPTAVRITIG----KEEDNSAV 355 (363)
T ss_dssp SSEEEEECSSC-------------------------HHHHHHHHHHTTEECEETTTTTCTTEEEEECC----CHHHHHHH
T ss_pred CeEEEEECCCC-------------------------HHHHHHHHHHCCeEEEeCccCCCCCeEEEECC----CHHHHHHH
Confidence 66676666422 24567777777865444333333568999974 77899999
Q ss_pred HHHHHHH
Q 010125 501 WTVVQQH 507 (517)
Q Consensus 501 ~~~l~~~ 507 (517)
+++|+++
T Consensus 356 ~~~l~~~ 362 (363)
T 3ffh_A 356 IALLEKL 362 (363)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999875
No 87
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=99.91 E-value=2.6e-23 Score=211.68 Aligned_cols=315 Identities=11% Similarity=0.072 Sum_probs=215.7
Q ss_pred HHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhc
Q 010125 107 AGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIG 186 (517)
Q Consensus 107 ~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g 186 (517)
+..+.+.+...+......|....+..++++++.+|+.+.+|++... ...++|+|||+|+..++.+..+
T Consensus 44 ~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~-----~~v~~~~g~~~a~~~~~~~~~~------- 111 (370)
T 2z61_A 44 PKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIP-----DNIIITGGSSLGLFFALSSIID------- 111 (370)
T ss_dssp CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCG-----GGEEEESSHHHHHHHHHHHHCC-------
T ss_pred CHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCCh-----hhEEECCChHHHHHHHHHHhcC-------
Confidence 4455566655554333456555678899999999999988864321 2789999999999888876532
Q ss_pred ccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 187 RENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 187 ~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
+++.|++.+++|.++..+++..|. +++.+| +|+++|+++++++ +.+|+++.+++++|.+
T Consensus 112 ----~gd~vl~~~p~~~~~~~~~~~~g~---~~~~v~--------~d~~~l~~~l~~~------~~~v~~~~p~nptG~~ 170 (370)
T 2z61_A 112 ----DGDEVLIQNPCYPCYKNFIRFLGA---KPVFCD--------FTVESLEEALSDK------TKAIIINSPSNPLGEV 170 (370)
T ss_dssp ----TTCEEEEESSCCTHHHHHHHHTTC---EEEEEC--------SSHHHHHHHCCSS------EEEEEEESSCTTTCCC
T ss_pred ----CCCEEEEeCCCchhHHHHHHHcCC---EEEEeC--------CCHHHHHHhcccC------ceEEEEcCCCCCcCcc
Confidence 456788888999999999999999 888887 5899999988653 3467778899999999
Q ss_pred cChhHHHHHHHHhCCeEEcccccccccccCcccccc--ccCCCCCCeeeeccccccCCC-CcceEEEEeCchhHHhhhcC
Q 010125 267 DPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHF--IDGVEGADSFSLNAHKWFFAT-LDCCCLWVKDPRALVSSLST 343 (517)
Q Consensus 267 dpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~--~~g~~~aDsi~~~~hK~l~~p-~~~g~l~~~~~~~~~~~~~~ 343 (517)
.|++ |.++|++||+++++|++|+.+.... ..... +.+....|.++.++||+++.| ..+|++++++. . .+.+..
T Consensus 171 ~~~~-l~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~-~-~~~~~~ 246 (370)
T 2z61_A 171 IDRE-IYEFAYENIPYIISDEIYNGLVYEG-KCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISNDE-I-IEAILK 246 (370)
T ss_dssp CCHH-HHHHHHHHCSEEEEECTTTTCBSSS-CCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEECCHH-H-HHHHHH
T ss_pred cCHH-HHHHHHHcCCEEEEEcchhhcccCC-CCcCHHHccCCCCcEEEEecChhccCCccceEEEEEECHH-H-HHHHHH
Confidence 9999 9999999999999999998765421 11111 112346788999999999733 45898887652 2 222211
Q ss_pred CccccCCccccccccccCCCccccCCCCCCchHHHHHHHHh---cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCC
Q 010125 344 NPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNY---GVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCH 420 (517)
Q Consensus 344 ~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~---g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~ 420 (517)
..... + .....+..+++...+ +.+.++++.++..++++++.+.|++. ++++. .+.
T Consensus 247 ~~~~~----------------~----~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~ 304 (370)
T 2z61_A 247 LQQNL----------------F----ISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF-GWEVN-NPI 304 (370)
T ss_dssp HHHHH----------------T----SSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCC-CCC
T ss_pred HHhhc----------------c----cCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc-CCeec-CCC
Confidence 00000 0 001223333333333 35567788888999999999999887 77765 344
Q ss_pred eeEEEE-EecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHH-hcCcEEEeeeeEC--CEeEEEEEecCCCCcHHH
Q 010125 421 FAVVCF-RVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESIN-ASGKAYMTHAVLG--GIYAIRFATGATLTEKRH 496 (517)
Q Consensus 421 ~~~v~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--g~~~lR~~~~~~~t~~~d 496 (517)
.+++.+ .+... ..++.+.|. +.|+....+..+. +..++|+++. +++++
T Consensus 305 ~~~~~~~~~~~~-------------------------~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~---~~~~~ 356 (370)
T 2z61_A 305 GAYYVFPNIGED-------------------------GREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYA---NSYEN 356 (370)
T ss_dssp BTTEECCBCSSC-------------------------HHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECC---SCHHH
T ss_pred cceEEEEecCCC-------------------------HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe---CCHHH
Confidence 444333 33211 245666665 5686554433222 3568999985 47789
Q ss_pred HHHHHHHHHHHH
Q 010125 497 VVVAWTVVQQHL 508 (517)
Q Consensus 497 i~~l~~~l~~~~ 508 (517)
++++++.|.++.
T Consensus 357 i~~~~~~l~~~l 368 (370)
T 2z61_A 357 IKEGLERIKEFL 368 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 88
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=99.91 E-value=6e-23 Score=212.20 Aligned_cols=335 Identities=12% Similarity=0.065 Sum_probs=220.4
Q ss_pred HHHHHHHHHhccccc-ccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHh
Q 010125 107 AGFLGEMLSSGFNIV-GFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKI 185 (517)
Q Consensus 107 ~~~~~~~l~~~~n~~-~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~ 185 (517)
+..+.+.+...+... ...|...++..++++.+.+|+.+.+|.+... ...+++|+|||+|+..++.+...
T Consensus 52 ~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~----~~~v~~t~g~~~a~~~~~~~~~~------ 121 (412)
T 2x5d_A 52 PPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDP----ESEAIVTIGSKEGLAHLMLATLD------ 121 (412)
T ss_dssp CHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCT----TTSEEEESCHHHHHHHHHHHHCC------
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCC----CcCEEEcCChHHHHHHHHHHhCC------
Confidence 445666666666443 3456556678899999999999988864210 01689999999999888776532
Q ss_pred cccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcccc
Q 010125 186 GRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITA 265 (517)
Q Consensus 186 g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~ 265 (517)
+++.|++..++|.++..+++..|+ +++.+|+++++++.+|+++|++++++++ .+|+++.+++++|.
T Consensus 122 -----~gd~Vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~i~~~~------~~v~l~~p~nptG~ 187 (412)
T 2x5d_A 122 -----HGDTILVPNPSYPIHIYGAVIAGA---QVRSVPLVPGIDFFNELERAIRESIPKP------RMMILGFPSNPTAQ 187 (412)
T ss_dssp -----TTCEEEEEESCCHHHHHHHHHHTC---EEEEEECSTTSCHHHHHHHHHHTEESCC------SEEEEESSCTTTCC
T ss_pred -----CCCEEEEcCCCchhHHHHHHHcCC---EEEEeecCCccCCCCCHHHHHHhcccCc------eEEEECCCCCCCCC
Confidence 456788888999999999999999 9999999864345689999998886432 36777889999999
Q ss_pred ccC---hhHHHHHHHHhCCeEEcccccccccccCcccccc--ccCCCCCCeeeeccccccC-CCCcceEEEEeCchhHHh
Q 010125 266 VDP---LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHF--IDGVEGADSFSLNAHKWFF-ATLDCCCLWVKDPRALVS 339 (517)
Q Consensus 266 idp---l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~--~~g~~~aDsi~~~~hK~l~-~p~~~g~l~~~~~~~~~~ 339 (517)
+-| +++|+++|++||+++++|++|+.+.+........ +.+....|.++.++||+++ ....+|+++++ +... +
T Consensus 188 ~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~~-~ 265 (412)
T 2x5d_A 188 CVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMVGN-PELV-S 265 (412)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCEEEEEC-HHHH-H
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcccceEEEEcC-HHHH-H
Confidence 865 7899999999999999999998876422111111 1112357788999999997 44568999884 3322 2
Q ss_pred hhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec
Q 010125 340 SLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNY--GVANLRHFLRSHVNMAKLFERLVSGDKRFEIVF 417 (517)
Q Consensus 340 ~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~--g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~ 417 (517)
.+.....+. + .....+..+++...+ +.+.++++.++..++++++.+.|++. ++++.
T Consensus 266 ~l~~~~~~~----------------~----~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~- 323 (412)
T 2x5d_A 266 ALARIKSYH----------------D----YGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREA-GWMVE- 323 (412)
T ss_dssp HHHHHHHHH----------------C----CCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHH-TCCCC-
T ss_pred HHHHHHhhh----------------c----cCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEec-
Confidence 221100000 0 001223333333333 34667888888999999999999887 77765
Q ss_pred CCCee-EEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHh-cCcEEEeeeeEC--CEeEEEEEecCCCCc
Q 010125 418 PCHFA-VVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINA-SGKAYMTHAVLG--GIYAIRFATGATLTE 493 (517)
Q Consensus 418 ~~~~~-~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~--g~~~lR~~~~~~~t~ 493 (517)
++..+ ++.+.+... . . .....++.+.|.+ .|+...++..+. +..++|+++.. +
T Consensus 324 ~~~~g~~~~~~~~~~-~---------------~----~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~---~ 380 (412)
T 2x5d_A 324 NPKASMYVWAKIPEP-Y---------------A----HLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIE---N 380 (412)
T ss_dssp CCSBSSEEEEECCTT-T---------------G----GGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS---C
T ss_pred CCCeeeEEEEEcCCc-c---------------C----CCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecC---C
Confidence 45544 455555321 0 0 0012456666654 586554433332 34689999853 6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010125 494 KRHVVVAWTVVQQHLEAFQ 512 (517)
Q Consensus 494 ~~di~~l~~~l~~~~~~l~ 512 (517)
+++++++++.|.++.+++.
T Consensus 381 ~~~l~~~l~~l~~~l~~~~ 399 (412)
T 2x5d_A 381 RDRLRQAVRGIKAMFRADG 399 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 7899999999998877643
No 89
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.91 E-value=3.3e-22 Score=203.56 Aligned_cols=300 Identities=12% Similarity=0.040 Sum_probs=210.0
Q ss_pred cccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCc
Q 010125 123 FNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTH 202 (517)
Q Consensus 123 ~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H 202 (517)
..|.... ..++++.+.+|+.+.+|++... ...++|+|+++++..++.+..+ +++.|++.+++|
T Consensus 64 ~~y~~~~-~~~l~~~la~~l~~~~g~~~~~-----~~v~~~~G~~~al~~~~~~l~~-----------~gd~Vl~~~~~y 126 (369)
T 3cq5_A 64 NRYPERD-AVELRDELAAYITKQTGVAVTR-----DNLWAANGSNEILQQLLQAFGG-----------PGRTALGFQPSY 126 (369)
T ss_dssp TSCCCTT-CHHHHHHHHHHHHHHHCCCCCG-----GGEEEESHHHHHHHHHHHHHCS-----------TTCEEEEEESSC
T ss_pred ccCCCcc-HHHHHHHHHHhhhhcccCCCCh-----HhEEECCChHHHHHHHHHHhcC-----------CCCEEEEcCCCh
Confidence 3454333 3689999999999987765221 2689999999998777765532 456788888999
Q ss_pred hHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCe
Q 010125 203 CALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIW 282 (517)
Q Consensus 203 ~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~ 282 (517)
.++..+++..|. +++.+|.+. ++.+|+++|++++++. .+.+|+++.+++++|.+.|++++.++|+.++++
T Consensus 127 ~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~ 196 (369)
T 3cq5_A 127 SMHPILAKGTHT---EFIAVSRGA--DFRIDMDVALEEIRAK-----QPDIVFVTTPNNPTGDVTSLDDVERIINVAPGI 196 (369)
T ss_dssp THHHHHHHHTTC---EEEEEECCT--TSSCCHHHHHHHHHHH-----CCSEEEEESSCTTTCCCCCHHHHHHHHHHCSSE
T ss_pred HHHHHHHHHcCC---EEEEecCCc--CCCCCHHHHHHHhhcc-----CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCE
Confidence 999999999999 999999763 5689999999999762 123677789999999999999999999999999
Q ss_pred EEcccccccccccCccccccccCCCCCCeeeeccccccCC-CCcceEEEEeCchhHHhhhcCCccccCCccccccccccC
Q 010125 283 VHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFA-TLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDY 361 (517)
Q Consensus 283 lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~-p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~ 361 (517)
+++|++|+.+... .............+.++.++||+++. ...+|++++++. . .+.+......
T Consensus 197 li~De~~~~~~~~-~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~-~-~~~l~~~~~~-------------- 259 (369)
T 3cq5_A 197 VIVDEAYAEFSPS-PSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANPA-F-IDAVMLVRLP-------------- 259 (369)
T ss_dssp EEEECTTGGGCCS-CCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEECTH-H-HHHHHTTSCT--------------
T ss_pred EEEECCchhhcCC-cchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeCHH-H-HHHHHHcCCC--------------
Confidence 9999999876532 11111112111145788899999974 456799988643 2 2233211100
Q ss_pred CCccccCCCCCCchHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCeeEEEEEecCCCcchhhhhh
Q 010125 362 KDWQITLSRRFRSLKLWFVIRNYG-VANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKT 440 (517)
Q Consensus 362 ~~~~~~~sr~~~al~~~~~l~~~g-~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~~~~v~f~~~~~~~~~~~~~~ 440 (517)
++ ...+..+++...+. .+.++++.++..++++++.+.|++. ++++. ++..+++++.+...
T Consensus 260 --~~------~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~--------- 320 (369)
T 3cq5_A 260 --YH------LSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEEL-GYAVV-PSESNFVFFGDFSD--------- 320 (369)
T ss_dssp --TC------SCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHH-TCEEE-CCSSSEEEEECCSS---------
T ss_pred --CC------CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC-CCEEC-CCCCeEEEEECCCC---------
Confidence 00 12334444444432 3456778888889999999999874 78876 55666777765311
Q ss_pred hhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 010125 441 KYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHL 508 (517)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~ 508 (517)
..++.+.|.+.|+..... ....++|+++. +++|+++++++|.++.
T Consensus 321 ----------------~~~l~~~l~~~gi~v~~~---~~~~~iRis~~----~~~~i~~~~~~l~~~~ 365 (369)
T 3cq5_A 321 ----------------QHAAWQAFLDRGVLIRDV---GIAGHLRTTIG----VPEENDAFLDAAAEII 365 (369)
T ss_dssp ----------------HHHHHHHHHHTTEECBCC---SCTTEEEEECC----CHHHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHCCEEEEEC---CCCCeEEEEeC----CHHHHHHHHHHHHHHH
Confidence 245666676778654332 22468999984 5789999999998764
No 90
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=99.91 E-value=4e-23 Score=214.59 Aligned_cols=343 Identities=10% Similarity=0.030 Sum_probs=224.8
Q ss_pred HHHHHHHHHhcccc---cccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCC-ceEEcCCchHHHHHHHHHHHHHHH
Q 010125 107 AGFLGEMLSSGFNI---VGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNG-GGVIQGTTCEAILCTLTAARDRVL 182 (517)
Q Consensus 107 ~~~~~~~l~~~~n~---~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~-~g~~t~ggt~a~~~al~~ar~~~~ 182 (517)
+..+.+.+...++. ....|....+..++++++++|+.+.+|.+.. .. ..++|+|||+|+..++.++..
T Consensus 52 ~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~-----~~~~v~~~~g~~~a~~~~~~~~~~--- 123 (429)
T 1yiz_A 52 PKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTIN-----PMTEVLVTVGAYEALYATIQGHVD--- 123 (429)
T ss_dssp CHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCC-----TTTSEEEESHHHHHHHHHHHHHCC---
T ss_pred CHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCC-----CcCCEEEecChHHHHHHHHHHhcC---
Confidence 34555666655543 2345655556789999999999999886432 13 589999999999888876532
Q ss_pred HHhcccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCC--------CcccCHHHHHHHHHHhHhcCCcceEE
Q 010125 183 NKIGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSS--------SYGLSPDSLMAQINSDVEVGLIPLFL 254 (517)
Q Consensus 183 ~~~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~--------~~~~d~~~Le~~i~~~~~~g~~p~~v 254 (517)
+++.|++..++|.++..+++..|. +++.+|++.++ ++.+|+++|+++++++ +.+|
T Consensus 124 --------~gd~Vl~~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~------~~~v 186 (429)
T 1yiz_A 124 --------EGDEVIIIEPFFDCYEPMVKAAGG---IPRFIPLKPNKTGGTISSADWVLDNNELEALFNEK------TKMI 186 (429)
T ss_dssp --------TTCEEEEEESCCTTHHHHHHHTTC---EEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTT------EEEE
T ss_pred --------CCCEEEEcCCCchhHHHHHHHcCC---EEEEEeCCcccccccccccCcccCHHHHHHHhccC------ceEE
Confidence 456688888999999999999999 99999987642 4689999999998643 3467
Q ss_pred EeeccCCccccccC---hhHHHHHHHHhCCeEEcccccccccccCcccccc--ccCCCCCCeeeeccccccCCC-CcceE
Q 010125 255 CATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHF--IDGVEGADSFSLNAHKWFFAT-LDCCC 328 (517)
Q Consensus 255 v~t~gtt~~G~idp---l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~--~~g~~~aDsi~~~~hK~l~~p-~~~g~ 328 (517)
+++.+++++|.+-| +++|+++|++||+++|+|++|+++.+........ +.+..+.|.+..++||+++.| ..+|+
T Consensus 187 ~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~ 266 (429)
T 1yiz_A 187 IINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGW 266 (429)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEE
T ss_pred EECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCcceEE
Confidence 77889999999975 9999999999999999999998765422211111 111235788999999999733 45899
Q ss_pred EEEeCchhHHhhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHh----c--HHHHHHHHHHHHHHHHH
Q 010125 329 LWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNY----G--VANLRHFLRSHVNMAKL 402 (517)
Q Consensus 329 l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~----g--~~g~~~~i~~~~~~a~~ 402 (517)
+++++. . .+.+.....+. .++ .+ ......+..+++.. + .+.++++.++..+++++
T Consensus 267 ~~~~~~-~-~~~l~~~~~~~--------------~~~--~~-~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (429)
T 1yiz_A 267 AYGPEA-L-LKNLQMVHQNC--------------VYT--CA-TPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDY 327 (429)
T ss_dssp EESCHH-H-HHHHHHHHHTT--------------TCC--CC-HHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHH
T ss_pred EEeCHH-H-HHHHHHHHhhc--------------ccC--CC-hHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHH
Confidence 888633 2 22221100000 000 00 01112333444431 3 45677888888899999
Q ss_pred HHHHHhcCCCeEEecCCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHH-hcCcEEEeeeeEC---
Q 010125 403 FERLVSGDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESIN-ASGKAYMTHAVLG--- 478 (517)
Q Consensus 403 l~~~l~~~~~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--- 478 (517)
+.+.|++. ++++..+....++++++...... .. .+. ... .....++.++|. +.|+.+.++..+.
T Consensus 328 l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~~-~~----~~~--~~~----~~~~~~l~~~l~~~~gv~v~~g~~f~~~~ 395 (429)
T 1yiz_A 328 MASFLAEV-GMNPTVPQGGYFMVADWSSLDSK-VD----LTQ--ETD----ARKDYRFTKWMTKSVGLQGIPPSAFYSEP 395 (429)
T ss_dssp HHHHHHHH-TCEEEECSBSSEEEEECCSSCTT-TT----CCS--SSS----SCHHHHHHHHHHHHTSEECBCGGGGSCGG
T ss_pred HHHHHHhC-CCcccCCCcceEEEEEccccccc-cc----ccc--ccc----CCCHHHHHHHHHHhCCEEEeCchHhCCCc
Confidence 99999887 78876443445667776432000 00 000 000 001245666665 5676544333332
Q ss_pred ----CEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 010125 479 ----GIYAIRFATGATLTEKRHVVVAWTVVQQHL 508 (517)
Q Consensus 479 ----g~~~lR~~~~~~~t~~~di~~l~~~l~~~~ 508 (517)
+..++|+++. +++++|++++++|.++.
T Consensus 396 ~~~~~~~~iRis~~---~~~e~i~~~l~~l~~~l 426 (429)
T 1yiz_A 396 NKHLGEDFVRYCFF---KKDENLQKAAEILRKWK 426 (429)
T ss_dssp GGGGTTTEEEEECC---SCHHHHHHHHHHHHHHS
T ss_pred ccCCCCCeEEEEec---CCHHHHHHHHHHHHHhc
Confidence 2468999985 37889999999998764
No 91
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.91 E-value=3.7e-23 Score=228.23 Aligned_cols=316 Identities=13% Similarity=0.055 Sum_probs=211.3
Q ss_pred HHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHHcCCCC
Q 010125 137 IVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQIVGIDV 216 (517)
Q Consensus 137 ~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~ 216 (517)
+..+.+++++|.+. ..++++|+|+||..++.+... +++.|+++..+|.|+..++...|+
T Consensus 209 ~~ee~la~l~G~d~--------~i~~~~Gtt~a~~~~i~al~~-----------~GD~Vlv~~~~h~s~~~~~~~~G~-- 267 (755)
T 2vyc_A 209 ESEKYAARVFGADR--------SWSVVVGTSGSNRTIMQACMT-----------DNDVVVVDRNCHKSIEQGLMLTGA-- 267 (755)
T ss_dssp HHHHHHHHHHTCSE--------EEEESSHHHHHHHHHHHHHCC-----------TTCEEEEESSCCHHHHHHHHHHCC--
T ss_pred HHHHHHHHHhCCCc--------eEEECCcHHHHHHHHHHHhcC-----------CCCEEEECCCchHHHHHHHHHcCC--
Confidence 45588999999864 357778778889887776532 567899999999999999999999
Q ss_pred CCEEEEecCCCC---Cccc-----CHHHHHHHHHHh--H--hcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEE
Q 010125 217 KNFRAIKTTKSS---SYGL-----SPDSLMAQINSD--V--EVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVH 284 (517)
Q Consensus 217 ~~v~~vp~d~~~---~~~~-----d~~~Le~~i~~~--~--~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lh 284 (517)
+++.++.+.++ .+.+ |+++|+++|++. + +.+..|.+|+++.+ |++|.+.|+++|+++|++||+++|
T Consensus 268 -~~v~v~~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~li 345 (755)
T 2vyc_A 268 -KPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLH 345 (755)
T ss_dssp -EEEEECCCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSEEE
T ss_pred -EEEEEeCCCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCEEE
Confidence 99999886421 1346 999999999863 2 24566767888887 689999999999999999999999
Q ss_pred cccccccccccCccccccccCCCC--CCe------eeeccccccCCCCcceEEEEeCch--hHHhhhcCCccccCCcccc
Q 010125 285 VDAAYAGSACICPEFRHFIDGVEG--ADS------FSLNAHKWFFATLDCCCLWVKDPR--ALVSSLSTNPEYLKNKATE 354 (517)
Q Consensus 285 vDaA~g~~~~~~~~~~~~~~g~~~--aDs------i~~~~hK~l~~p~~~g~l~~~~~~--~~~~~~~~~~~yl~~~~~~ 354 (517)
||+||+++..+.+.++... .+.+ +|+ ++.++||++++|.++|++++++.. .-...+......+.
T Consensus 346 vDeA~~~~~~~~~~~~~~~-~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~~~~~~~~~~~----- 419 (755)
T 2vyc_A 346 FDEAWYGYARFNPIYADHY-AMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYMMHA----- 419 (755)
T ss_dssp EECTTCTTGGGCGGGTTSS-SSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHHHHHHHHHHTS-----
T ss_pred EECcCchhcccCcccCCcc-hhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHHHHHHHHHHhC-----
Confidence 9999987654444321111 1123 677 999999999999889999998761 10001100000000
Q ss_pred ccccccCCCccccCCCC-CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC---------eEEecCCCe---
Q 010125 355 SMQVVDYKDWQITLSRR-FRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKR---------FEIVFPCHF--- 421 (517)
Q Consensus 355 ~~~~~~~~~~~~~~sr~-~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~---------~~l~~~~~~--- 421 (517)
..+-. ....++-++++.+..+|.++++++..++++++++.|+++++ |+++.+...
T Consensus 420 ------------s~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~ 487 (755)
T 2vyc_A 420 ------------TTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDP 487 (755)
T ss_dssp ------------CSSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECT
T ss_pred ------------CCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhcccc
Confidence 00101 11234445566665565678899999999999999998877 777654311
Q ss_pred ----------------------------------------------eEEEEEecCCCcchhhhhhhhhccccchHHHHHH
Q 010125 422 ----------------------------------------------AVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINE 455 (517)
Q Consensus 422 ----------------------------------------------~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (517)
..++|...+.+.. + ..++.+.
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~------------G-~~~~~g~ 554 (755)
T 2vyc_A 488 QTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGED------------G-ELEETGV 554 (755)
T ss_dssp TTCCEEEGGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTT------------S-SBCSSCC
T ss_pred ccccccccccccchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCC------------C-CccccCC
Confidence 2344444321100 0 0000001
Q ss_pred HHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 010125 456 FNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHLEAF 511 (517)
Q Consensus 456 ~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l 511 (517)
....+.+.|.+.|+. +.. .+...+|+++ ++.++++++++++++|+++.+..
T Consensus 555 ~~~~l~~~L~~~gI~-~e~---~~~~~v~~~~-~~g~t~~~~~~l~~al~~~~~~~ 605 (755)
T 2vyc_A 555 PAALVTAWLGRHGIV-PTR---TTDFQIMFLF-SMGVTRGKWGTLVNTLCSFKRHY 605 (755)
T ss_dssp CHHHHHHHHHTTTCC-CSE---ECSSEEEEEC-CTTCCTTTTHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCE-Eee---cCCCeEEEEE-CCCCCHHHHHHHHHHHHHHHHhh
Confidence 124556666666753 222 2456799987 57788889999999999987654
No 92
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.91 E-value=4.4e-23 Score=213.67 Aligned_cols=323 Identities=13% Similarity=0.057 Sum_probs=204.7
Q ss_pred hhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHH
Q 010125 130 AATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAA 209 (517)
Q Consensus 130 ~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa 209 (517)
+...+.+++.+++++++|.+ ..+++++||+|+..++.+++-. +++.|+++..+|.++..++
T Consensus 39 g~~~l~~~l~~~la~~~g~~---------~~i~~~~gt~al~~~~~~~~~~----------~gd~Vl~~~~~~~~~~~~~ 99 (418)
T 2c81_A 39 GEESMERKFAKAFADFNGVP---------YCVPTTSGSTALMLALEALGIG----------EGDEVIVPSLTWIATATAV 99 (418)
T ss_dssp SSCCHHHHHHHHHHHHHTCS---------EEEEESCHHHHHHHHHHHTTCC----------TTCEEEEESSSCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCC---------cEEEeCCHHHHHHHHHHHcCCC----------CcCEEEECCCccHhHHHHH
Confidence 33445566778888888876 2578888999998887765211 5567888999999999999
Q ss_pred HHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEccccc
Q 010125 210 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAY 289 (517)
Q Consensus 210 ~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~ 289 (517)
+..|+ +++.+|+++ +++.+|+++|+++|++++ .+|+++ +++|.+.|+++|.++|++||+++|+|++|
T Consensus 100 ~~~g~---~~~~~~~~~-~~~~~d~~~l~~~i~~~~------~~v~~~---~~~G~~~~~~~i~~~~~~~~~~li~D~a~ 166 (418)
T 2c81_A 100 LNVNA---LPVFVDVEA-DTYCIDPQLIKSAITDKT------KAIIPV---HLFGSMANMDEINEIAQEHNLFVIEDCAQ 166 (418)
T ss_dssp HHTTC---EEEEECBCT-TTCSBCHHHHGGGCCTTE------EEECCB---CCTTCCCCHHHHHHHHHHTTCEEEEECTT
T ss_pred HHcCC---EEEEEecCC-CCCCcCHHHHHHhhCCCC------eEEEEe---CCcCCcccHHHHHHHHHHCCCEEEEECcc
Confidence 99999 999999975 357999999999887543 255543 47899999999999999999999999999
Q ss_pred ccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCccccCCccc-cccccccCCC-----
Q 010125 290 AGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKAT-ESMQVVDYKD----- 363 (517)
Q Consensus 290 g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~-~~~~~~~~~~----- 363 (517)
+.+..... .. +..+..+++.++++||+++.+ .+|+++++++..... +.....+-..... .......+..
T Consensus 167 ~~~~~~~~--~~-~~~~~~~~~~s~s~~K~~~~g-~~g~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (418)
T 2c81_A 167 SHGSVWNN--QR-AGTIGDIGAFSCQQGKVLTAG-EGGIIVTKNPRLFEL-IQQLRADSRVYCDDSSELMHGDMQLVKKG 241 (418)
T ss_dssp CTTCEETT--EE-TTSSSSEEEEECCTTSSSCSS-SCEEEEESCHHHHHH-HHHHHBTTEEECSCGGGCCTTCBSEEECC
T ss_pred cccCccCC--Ee-cccccceEEEeccCCcccCCC-CeEEEEECCHHHHHH-HHHHHHhCccccccccccccchhhccccc
Confidence 87753211 11 111224566667779999874 677777655543221 1100000000000 0000000100
Q ss_pred ccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCe------eEEEEEecCCCcchhh
Q 010125 364 WQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHF------AVVCFRVSPSPVLMDK 437 (517)
Q Consensus 364 ~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~~------~~v~f~~~~~~~~~~~ 437 (517)
-.+....+...+.. ++.....++++++.++..++++++.+.|+++|++++..++.. .++++++.....
T Consensus 242 ~~~g~~~~~~~~~a--a~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 315 (418)
T 2c81_A 242 DIQGSNYCLSEFQS--AILLDQLQELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTYYGYVFRFDPVKF---- 315 (418)
T ss_dssp SSCCCBCCCCHHHH--HHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCCSEEEEEECGGGT----
T ss_pred cccCcCCCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCcccccEEEEEEEccccc----
Confidence 00111112222322 232223456788888999999999999999989998744432 245566642000
Q ss_pred hhhhhhccccchHHHHHHHHHHHHHHHHhc-CcE---EEeee-eE------C--------------------C-------
Q 010125 438 LKTKYVNCLLSEEEQINEFNRELLESINAS-GKA---YMTHA-VL------G--------------------G------- 479 (517)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~---~~~~~-~~------~--------------------g------- 479 (517)
. +....++.+.|.++ |+. ...+. .. . +
T Consensus 316 -----------~----~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (418)
T 2c81_A 316 -----------G----GLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSER 380 (418)
T ss_dssp -----------T----TCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHH
T ss_pred -----------c----ccCHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCChHHHH
Confidence 0 00124566777777 765 32211 00 0 1
Q ss_pred --EeEEEEEecCCCC-cHHHHHHHHHHHHHHHHHH
Q 010125 480 --IYAIRFATGATLT-EKRHVVVAWTVVQQHLEAF 511 (517)
Q Consensus 480 --~~~lR~~~~~~~t-~~~di~~l~~~l~~~~~~l 511 (517)
..++|+++ ++.+ +++||++++++|+++.+++
T Consensus 381 ~~~~~lrl~~-~~~~gt~edi~~~~~~l~~~~~~~ 414 (418)
T 2c81_A 381 ASGQSIVIHH-AILLAEPSHLSLLVDAVAELARKF 414 (418)
T ss_dssp HHHHEEEEEG-GGGGSCHHHHHHHHHHHHHHHHTT
T ss_pred HHhCEEEecC-CccCCCHHHHHHHHHHHHHHHHhh
Confidence 25899998 5677 8999999999999887654
No 93
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=99.91 E-value=2.1e-22 Score=203.49 Aligned_cols=314 Identities=9% Similarity=0.033 Sum_probs=214.7
Q ss_pred hHHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHh
Q 010125 106 IAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKI 185 (517)
Q Consensus 106 ~~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~ 185 (517)
++..+.+.+...+.. ...| ..+. ..++++++++++|.+++ ..++|+|||+|+..++.+..+
T Consensus 30 ~~~~v~~a~~~~~~~-~~~y-~~~~----~~~l~~~la~~~~~~~~-------~i~~~~g~~~a~~~~~~~l~~------ 90 (354)
T 3ly1_A 30 MSPKAQAAARDAVVK-ANRY-AKNE----ILMLGNKLAAHHQVEAP-------SILLTAGSSEGIRAAIEAYAS------ 90 (354)
T ss_dssp CCHHHHHHHHHTGGG-TTSC-CHHH----HHHHHHHHHHHTTSCGG-------GEEEESHHHHHHHHHHHHHCC------
T ss_pred CCHHHHHHHHHHHhh-CcCC-CCCc----hHHHHHHHHHHhCCChH-------HEEEeCChHHHHHHHHHHHhC------
Confidence 344555566555542 2333 2222 34566778888887655 689999999999888776532
Q ss_pred cccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcccc
Q 010125 186 GRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITA 265 (517)
Q Consensus 186 g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~ 265 (517)
+++.|+++.++|.++..+++..|+ +++.+|.++ ++.+|+++|++++++. ..+.+|+++.+++++|.
T Consensus 91 -----~gd~vl~~~~~~~~~~~~~~~~g~---~~~~~~~~~--~~~~d~~~l~~~l~~~----~~~~~v~l~~p~nptG~ 156 (354)
T 3ly1_A 91 -----LEAQLVIPELTYGDGEHFAKIAGM---KVTKVKMLD--NWAFDIEGLKAAVAAY----SGPSIVYLVNPNNPTGT 156 (354)
T ss_dssp -----TTCEEEEESSSCTHHHHHHHHTTC---EEEEECCCT--TSCCCHHHHHHHHHTC----SSCEEEEEESSCTTTCC
T ss_pred -----CCCeEEECCCCchHHHHHHHHcCC---EEEEecCCC--CCCCCHHHHHHHhccC----CCCCEEEEeCCCCCcCC
Confidence 456788888999999999999999 999999875 4799999999999731 12347888899999999
Q ss_pred ccChhHHHHHHHH--hCCeEEcccccccccccCc--cccccccCCCCCCeeeeccccccC-CCCcceEEEEeCchhHHhh
Q 010125 266 VDPLKPLCDVAKQ--FGIWVHVDAAYAGSACICP--EFRHFIDGVEGADSFSLNAHKWFF-ATLDCCCLWVKDPRALVSS 340 (517)
Q Consensus 266 idpl~eI~~i~~~--~gi~lhvDaA~g~~~~~~~--~~~~~~~g~~~aDsi~~~~hK~l~-~p~~~g~l~~~~~~~~~~~ 340 (517)
+-|++++.++|+. ||+++|+|++|+.+..... ............+.++.++||+++ .+.++|++++. +... +.
T Consensus 157 ~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~-~~ 234 (354)
T 3ly1_A 157 ITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAH-PTVI-AL 234 (354)
T ss_dssp CCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECC-HHHH-HH
T ss_pred CcCHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeecC-HHHH-HH
Confidence 9999988888887 9999999999986653221 111111111134578889999997 55778888873 3322 22
Q ss_pred hcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC
Q 010125 341 LSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYG-VANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPC 419 (517)
Q Consensus 341 ~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g-~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~ 419 (517)
+...... + ....+..+++...+. .+.++++.++..++++++.+.|++. ++++. ++
T Consensus 235 ~~~~~~~----------------~------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~-~~ 290 (354)
T 3ly1_A 235 MGRYVAG----------------E------KINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKALEDL-KLPYL-PS 290 (354)
T ss_dssp HGGGTTC----------------S------CCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CC
T ss_pred HHHhcCC----------------C------CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeEC-CC
Confidence 2111000 0 112334444444442 3567888889999999999999887 77665 45
Q ss_pred CeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeE-CCEeEEEEEecCCCCcHHHHH
Q 010125 420 HFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVL-GGIYAIRFATGATLTEKRHVV 498 (517)
Q Consensus 420 ~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-~g~~~lR~~~~~~~t~~~di~ 498 (517)
..+++++.+... ..++.+.|.++|+. +. ..+ .+..++|+++. +++|++
T Consensus 291 ~~~~~~~~~~~~-------------------------~~~~~~~l~~~gi~-v~-g~~~~~~~~iRis~~----~~~~i~ 339 (354)
T 3ly1_A 291 EGNFVFHQLVVP-------------------------LKDYQTHMADAGVL-IG-RAFPPADNWCRISLG----TPQEMQ 339 (354)
T ss_dssp CSSEEEEECSSC-------------------------HHHHHHHHHHTTEE-CC-CCCTTCTTEEEEECC----CHHHHH
T ss_pred CceEEEEECCCC-------------------------HHHHHHHHHHCCEE-Ee-ecCCCCCCEEEEEcC----CHHHHH
Confidence 556666665432 24566777777864 44 323 24578999974 678999
Q ss_pred HHHHHHHHHHH
Q 010125 499 VAWTVVQQHLE 509 (517)
Q Consensus 499 ~l~~~l~~~~~ 509 (517)
++++.|+++.+
T Consensus 340 ~~~~~l~~~l~ 350 (354)
T 3ly1_A 340 WVADTMREFRK 350 (354)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988765
No 94
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.91 E-value=6.1e-23 Score=210.91 Aligned_cols=328 Identities=9% Similarity=0.024 Sum_probs=220.7
Q ss_pred HHHHHHHHHhccccc----ccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHH
Q 010125 107 AGFLGEMLSSGFNIV----GFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVL 182 (517)
Q Consensus 107 ~~~~~~~l~~~~n~~----~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~ 182 (517)
+..+.+.+...+... ...|...++..++++++.+|+.+.+|++... ...++|+|||+|+..++.+..+
T Consensus 50 ~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~-----~~i~~~~g~~~al~~~~~~l~~--- 121 (398)
T 3ele_A 50 PQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNA-----DNLYMTMGAAASLSICFRALTS--- 121 (398)
T ss_dssp CHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCG-----GGEEEESSHHHHHHHHHHHHCC---
T ss_pred CHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCCh-----HHEEEccCHHHHHHHHHHHHcC---
Confidence 344555555554332 3456666677899999999999999864321 2789999999999888776632
Q ss_pred HHhcccCCCC-eEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCC
Q 010125 183 NKIGRENISK-LIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTT 261 (517)
Q Consensus 183 ~~~g~~~~~~-~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt 261 (517)
++ +.|++..++|.++..+++..|+ +++.+|++++ ++.+|+++|++++++++ .+|+++.++|
T Consensus 122 --------~g~d~vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~~-~~~~d~~~l~~~l~~~~------~~v~~~~p~n 183 (398)
T 3ele_A 122 --------DAYDEFITIAPYFPEYKVFVNAAGA---RLVEVPADTE-HFQIDFDALEERINAHT------RGVIINSPNN 183 (398)
T ss_dssp --------STTCEEEEESSCCTHHHHHHHHTTC---EEEEECCCTT-TSSCCHHHHHHTCCTTE------EEEEECSSCT
T ss_pred --------CCCCEEEEeCCCchhhHHHHHHcCC---EEEEEecCCc-CCcCCHHHHHHHhCcCC------CEEEEcCCCC
Confidence 45 6788888999999999999999 9999999753 57999999999987543 3778889999
Q ss_pred ccccccC---hhHHHHHHHH------hCCeEEcccccccccccCccccccccCCCCCCeeeeccccccC-CCCcceEEEE
Q 010125 262 AITAVDP---LKPLCDVAKQ------FGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFF-ATLDCCCLWV 331 (517)
Q Consensus 262 ~~G~idp---l~eI~~i~~~------~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~-~p~~~g~l~~ 331 (517)
++|.+-| +++|+++|++ ||+++++|++|+.+......... .......+.++.++||+++ .+..+|++++
T Consensus 184 ptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~ 262 (398)
T 3ele_A 184 PSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPF-VTKYYDNTLVCYSYSKSLSLPGERIGYVLV 262 (398)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCC-GGGTCSSEEEEEESTTTSSCTTTCCEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCC-hHhhcCCeEEEEehhhcCCCccceeEEEEE
Confidence 9999977 7777899999 99999999999876542211111 1112245578889999997 6678999988
Q ss_pred eCchh----HHhhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Q 010125 332 KDPRA----LVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLV 407 (517)
Q Consensus 332 ~~~~~----~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l 407 (517)
++... +...+....... .......+..+++...+... ...++..++++++.+.|
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~l~~~L 320 (398)
T 3ele_A 263 PDEVYDKAELYAAVCGAGRAL-------------------GYVCAPSLFQKMIVKCQGAT---GDINAYKENRDLLYEGL 320 (398)
T ss_dssp CTTSTTHHHHHHHHHHHHHHT-------------------TCCCSCHHHHHHHTTCTTCC---CCHHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHhhhc-------------------cccCCCHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHH
Confidence 76521 111110000000 00001112223222222111 13456677888888888
Q ss_pred hcCCCeEEecCCCeeE-EEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEE
Q 010125 408 SGDKRFEIVFPCHFAV-VCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFA 486 (517)
Q Consensus 408 ~~~~~~~l~~~~~~~~-v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~ 486 (517)
++. ++++.. +..++ +.+.+... ...++.+.|.++|+...++..+....++|++
T Consensus 321 ~~~-g~~~~~-~~~~~~~~~~~~~~------------------------~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis 374 (398)
T 3ele_A 321 TRI-GYHCFK-PDGAFYMFVKALED------------------------DSNAFCEKAKEEDVLIVAADGFGCPGWVRIS 374 (398)
T ss_dssp HHH-TCCEEC-CSBSSEEEEECSSS------------------------CHHHHHHHHHTTTEECEESGGGTCTTEEEEE
T ss_pred HHc-CCeecC-CCeeEEEEEEcCCC------------------------CHHHHHHHHHHCCEEEeCccccCCCCeEEEE
Confidence 876 777764 44444 55554321 0245666777788765554444445689999
Q ss_pred ecCCCCcHHHHHHHHHHHHHHHHHHH
Q 010125 487 TGATLTEKRHVVVAWTVVQQHLEAFQ 512 (517)
Q Consensus 487 ~~~~~t~~~di~~l~~~l~~~~~~l~ 512 (517)
+. +++++|++++++|.++.+++.
T Consensus 375 ~~---~~~e~i~~~l~~l~~~l~~~~ 397 (398)
T 3ele_A 375 YC---VDREMIKHSMPAFEKIYKKYN 397 (398)
T ss_dssp CC---SCHHHHHHHHHHHHHHHHHHC
T ss_pred ec---CCHHHHHHHHHHHHHHHHHhh
Confidence 84 588899999999999887653
No 95
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.91 E-value=6.4e-24 Score=216.29 Aligned_cols=326 Identities=12% Similarity=0.098 Sum_probs=214.5
Q ss_pred CChHHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHH
Q 010125 104 GSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLN 183 (517)
Q Consensus 104 ~~~~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~ 183 (517)
+..+. +.+.+...+... .|...+...++++ .+++++|.+ .+++++|||+|+..++.+++-
T Consensus 16 ~~~~~-~~~~~~~~~~~~--~~~~~~~~~~l~~----~la~~~~~~---------~~~~~~~gt~a~~~~~~~~~~---- 75 (374)
T 3uwc_A 16 ADIEP-YLNDLREFIKTA--DFTLGAELEKFEK----RFAALHNAP---------HAIGVGTGTDALAMSFKMLNI---- 75 (374)
T ss_dssp SSCHH-HHHHHHHHHHHT--CCSSCHHHHHHHH----HHHHHTTCS---------EEEEESCHHHHHHHHHHHTTC----
T ss_pred CCchH-HHHHHHHHHHcC--CcccChhHHHHHH----HHHHHhCCC---------cEEEeCCHHHHHHHHHHHcCC----
Confidence 33334 666665555432 3445566666665 455666654 468999999999887776521
Q ss_pred HhcccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcc
Q 010125 184 KIGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAI 263 (517)
Q Consensus 184 ~~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~ 263 (517)
.+++.|+++..+|.++..+++..|+ +++.+|++. ++.+|+++|++++++++ .+|+ +++++
T Consensus 76 ------~~gd~v~~~~~~~~~~~~~~~~~g~---~~~~~~~~~--~~~~d~~~l~~~~~~~~------~~v~---~~n~~ 135 (374)
T 3uwc_A 76 ------GAGDEVITCANTFIASVGAIVQAGA---TPVLVDSEN--GYVIDPEKIEAAITDKT------KAIM---PVHYT 135 (374)
T ss_dssp ------CTTCEEEEESSSCHHHHHHHHHTTC---EEEEECBCT--TSSBCGGGTGGGCCTTE------EEEC---CBCGG
T ss_pred ------CCCCEEEECCCccHHHHHHHHHcCC---EEEEEecCC--CCCcCHHHHHHhCCCCc------eEEE---EeCCc
Confidence 1566788999999999999999999 999999973 67999999999887643 2444 77899
Q ss_pred ccccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccc--cccCCCCcceEEEEeCchhHHhhh
Q 010125 264 TAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAH--KWFFATLDCCCLWVKDPRALVSSL 341 (517)
Q Consensus 264 G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~h--K~l~~p~~~g~l~~~~~~~~~~~~ 341 (517)
|.+.|+++|+++|++||+++|+|++|+.+....... . + ..+|.+++++| |+++.+..+|+++++++.......
T Consensus 136 G~~~~~~~i~~~~~~~~~~li~D~~~~~g~~~~~~~--~--~-~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~~~~~~ 210 (374)
T 3uwc_A 136 GNIADMPALAKIAKKHNLHIVEDACQTILGRINDKF--V--G-SWGQFACFSLHPLKNLNVWSDAGVIITHSDEYAEKLR 210 (374)
T ss_dssp GCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEE--T--T-SSSSEEEEECSSSSSSCCSSCCEEEEESCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHcCCEEEEeCCCccCceeCCee--c--c-ccccEEEEeCCCCCcCCccceeEEEEeCCHHHHHHHH
Confidence 999999999999999999999999998654422111 1 0 13699999987 999763347777776654322111
Q ss_pred cCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC-eEEecCCC
Q 010125 342 STNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKR-FEIVFPCH 420 (517)
Q Consensus 342 ~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~-~~l~~~~~ 420 (517)
... ..... . .+. ....+..+....+.+++.....++++++.++..++++++.+.|+++++ +++...+.
T Consensus 211 ~~~----~~~~~---~--~~~--~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 279 (374)
T 3uwc_A 211 LYR----NHGLI---N--RDV--CVEYGINCRMDTIQAVIANRLMNQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRRE 279 (374)
T ss_dssp HHT----BTTEE---E--TTE--ESSCCCBCBCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCT
T ss_pred HHH----hcCcc---c--cCc--cccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCC
Confidence 100 00000 0 000 001122223345555555555677888999999999999999999887 87753332
Q ss_pred e---eEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeee--e------E------------
Q 010125 421 F---AVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHA--V------L------------ 477 (517)
Q Consensus 421 ~---~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~--~------~------------ 477 (517)
. +.+.|..... ...++.+.|.++|+...... . +
T Consensus 280 ~~~~~~~~~~~~~~------------------------~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (374)
T 3uwc_A 280 GVYHVFHIYVLRVK------------------------YRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPM 335 (374)
T ss_dssp TEECCCSSEEEEET------------------------THHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHH
T ss_pred CCceeeEEEEEEcC------------------------CHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCcc
Confidence 1 1122333211 02456777777786432221 0 0
Q ss_pred ---CCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 010125 478 ---GGIYAIRFATGATLTEKRHVVVAWTVVQQHLEA 510 (517)
Q Consensus 478 ---~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~ 510 (517)
.....+|+++ ++.++++||+++++.|+++.++
T Consensus 336 ~~~~~~~~lrl~~-~~~~t~edi~~~~~~l~~~l~~ 370 (374)
T 3uwc_A 336 AEKHGEAVITLPA-HPYLTEEEINYIIKKVREFYLE 370 (374)
T ss_dssp HHHHHHHEEEECC-CTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCEEEccC-CCCCCHHHHHHHHHHHHHHHHh
Confidence 0126899997 5678899999999999988764
No 96
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.91 E-value=5.7e-24 Score=216.85 Aligned_cols=323 Identities=12% Similarity=0.044 Sum_probs=209.3
Q ss_pred HHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhc
Q 010125 107 AGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIG 186 (517)
Q Consensus 107 ~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g 186 (517)
+..+.+.+...+... .|..++...++|+.+.+ ++|.+ .+++++|||+|+..++.++.-
T Consensus 16 ~~~~~~a~~~~~~~~--~~~~~~~~~~l~~~la~----~~~~~---------~~i~~~sgt~al~~~l~~l~~------- 73 (373)
T 3frk_A 16 EYEIKFKFEEIYKRN--WFILGDEDKKFEQEFAD----YCNVN---------YCIGCGNGLDALHLILKGYDI------- 73 (373)
T ss_dssp HHHHHHHHHHHHHHT--CCSSSHHHHHHHHHHHH----HHTSS---------EEEEESCHHHHHHHHHHHTTC-------
T ss_pred CHHHHHHHHHHHHCC--CccCCchHHHHHHHHHH----HhCCC---------eEEEeCCHHHHHHHHHHHcCC-------
Confidence 344445555444332 34556667777766554 45554 479999999999888876521
Q ss_pred ccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 187 RENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 187 ~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
.+++.|+++..+|.++..+++..|+ +++.+|++++ ++.+|+++|++++++++ .+|+ +++++|.+
T Consensus 74 ---~~gd~Vi~~~~~~~~~~~~~~~~g~---~~~~~~~~~~-~~~~d~~~l~~~l~~~~------~~v~---~~n~~G~~ 137 (373)
T 3frk_A 74 ---GFGDEVIVPSNTFIATALAVSYTGA---KPIFVEPDIR-TYNIDPSLIESAITEKT------KAII---AVHLYGQP 137 (373)
T ss_dssp ---CTTCEEEEETTSCTHHHHHHHHHSC---EEEEECEETT-TTEECGGGTGGGCCTTE------EEEE---EECCTTCC
T ss_pred ---CCcCEEEECCCCcHHHHHHHHHcCC---EEEEEecccc-ccCcCHHHHHHhcCCCC------eEEE---EECCCcCc
Confidence 1566799999999999999999999 9999999853 58999999999887643 2454 56689999
Q ss_pred cChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeec--cccccCCCCcceEEEEeCchhHHhhhcCC
Q 010125 267 DPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLN--AHKWFFATLDCCCLWVKDPRALVSSLSTN 344 (517)
Q Consensus 267 dpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~--~hK~l~~p~~~g~l~~~~~~~~~~~~~~~ 344 (517)
.|+++|.++|++||+++|+|+||+.+..... +.. + ...|.++++ .||+++.+..+|+++.+++.... .+..
T Consensus 138 ~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~--~~~--~-~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~~~-~~~~- 210 (373)
T 3frk_A 138 ADMDEIKRIAKKYNLKLIEDAAQAHGSLYKG--MKV--G-SLGDAAGFSFYPAKNLGSLGDGGAVVTNDKDLAE-KIKA- 210 (373)
T ss_dssp CCHHHHHHHHHHHTCEEEEECTTCTTCEETT--EET--T-SSSSEEEEECCTTSSSCCSSSCEEEEESCHHHHH-HHHH-
T ss_pred ccHHHHHHHHHHcCCEEEEECCcccCCEECC--Eec--c-ccccEEEEeCcCCCccCccceeEEEEeCCHHHHH-HHHH-
Confidence 9999999999999999999999986554221 111 1 135777777 67999763446777766654322 1110
Q ss_pred ccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCC---e
Q 010125 345 PEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCH---F 421 (517)
Q Consensus 345 ~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~---~ 421 (517)
+...... . .+. ....+..+....+.+++.....++++++.++..++++++.+.|++++ +++...+. .
T Consensus 211 --~~~~g~~---~--~~~--~~~~g~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~ 280 (373)
T 3frk_A 211 --LSNYGSE---K--KYH--HIYKGFNSRLDELQAGFLRVKLKYLDKWNEERRKIAQKYIAGINNPN-VIIPVEADYAKH 280 (373)
T ss_dssp --HHBTTCS---B--TTB--CCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTT-EECCCCCTTEEC
T ss_pred --HHhcCcc---c--CCc--cccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-eEeccCCCCCce
Confidence 0000000 0 000 01112223344555555555567788889999999999999999886 76543221 1
Q ss_pred eEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeee--eEC---------------------
Q 010125 422 AVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHA--VLG--------------------- 478 (517)
Q Consensus 422 ~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~--~~~--------------------- 478 (517)
+.+.|.+.... ...+.+.|.++|+..-... ...
T Consensus 281 ~~~~~~~~~~~------------------------~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (373)
T 3frk_A 281 VWYTFVIRSEK------------------------RDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKI 336 (373)
T ss_dssp CCSSEEEEESS------------------------HHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHH
T ss_pred eeEEEEEEeCC------------------------HHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHH
Confidence 22233332210 3466777777786432111 000
Q ss_pred CEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 010125 479 GIYAIRFATGATLTEKRHVVVAWTVVQQHLE 509 (517)
Q Consensus 479 g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~ 509 (517)
....+|+++ ++.++++||+++++.|++...
T Consensus 337 ~~~~lrl~~-~~~~t~~di~~~~~~l~~~~~ 366 (373)
T 3frk_A 337 ANEILSIPI-WYGMKNEEIEYVIDKINAWKL 366 (373)
T ss_dssp HHHEEEECC-CTTCCHHHHHHHHHHHHTCC-
T ss_pred HhCEEEccC-CCCCCHHHHHHHHHHHHHHhh
Confidence 116899998 678899999999999987643
No 97
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.91 E-value=2.5e-22 Score=207.38 Aligned_cols=293 Identities=11% Similarity=0.076 Sum_probs=199.0
Q ss_pred HHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHHc
Q 010125 133 ELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQIV 212 (517)
Q Consensus 133 ~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~~ 212 (517)
.+..++.+++++++|.+. .+++++||+||..++.+..+ +++.|+++...|.++..+++..
T Consensus 104 ~~~~~l~~~la~~~g~~~---------~i~~~sGt~a~~~~l~~~~~-----------~gd~Vl~~~~~~~~~~~~~~~~ 163 (409)
T 3kki_A 104 YDKPMIEKRLAKFTGFDE---------CLLSQSGWNANVGLLQTICQ-----------PNTNVYIDFFAHMSLWEGARYA 163 (409)
T ss_dssp TTSCHHHHHHHHHHTCSE---------EEEESCHHHHHHHHHHHHCC-----------TTCEEEEETTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCe---------EEEecchHHHHHHHHHHhcC-----------CCCEEEECCCcCHHHHHHHHHc
Confidence 334456677777788763 46667778999888776532 5677889999999999999999
Q ss_pred CCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEcccccccc
Q 010125 213 GIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGS 292 (517)
Q Consensus 213 G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~ 292 (517)
|. +++.++. +|+++|++++++.. +.+|+++.+++++|.+.|+++|+++|++||+|+++|++|+++
T Consensus 164 g~---~~~~~~~-------~d~~~le~~l~~~~-----~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g 228 (409)
T 3kki_A 164 NA---QAHPFMH-------NNCDHLRMLIQRHG-----PGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLG 228 (409)
T ss_dssp TC---EEEEECT-------TCHHHHHHHHHHHC-----SCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred CC---eEEEecC-------CCHHHHHHHHHhcC-----CeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCcccc
Confidence 98 8877753 58999999998642 248888899999999999999999999999999999999775
Q ss_pred cccCcc--ccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhc-CCccccCCccccccccccCCCccccCC
Q 010125 293 ACICPE--FRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLS-TNPEYLKNKATESMQVVDYKDWQITLS 369 (517)
Q Consensus 293 ~~~~~~--~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~-~~~~yl~~~~~~~~~~~~~~~~~~~~s 369 (517)
.+.... ..........+|+++.++||+++.+ .|+++.++. .. +.+. ....+.. ..+
T Consensus 229 ~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~--gg~v~~~~~-~~-~~~~~~~~~~~~-----------------~~~ 287 (409)
T 3kki_A 229 THGPNGAGLLAELGLTREVHFMTASLAKTFAYR--AGAIWCNNE-VN-RCVPFISYPAIF-----------------SST 287 (409)
T ss_dssp TSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSS--CEEEEESSS-GG-GTHHHHCHHHHH-----------------SBC
T ss_pred ccCCCCCcchhhcCCCCCCCEEEeecchhhCCC--ceEEEECHH-HH-HHHHHhCcCccc-----------------cCC
Confidence 432111 0111111236899999999999876 466666443 22 1111 1111111 011
Q ss_pred CC-CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCeeEEEEEecCCCcchhhhhhhhhccccc
Q 010125 370 RR-FRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLS 448 (517)
Q Consensus 370 r~-~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~ 448 (517)
.. ....++.++++.+. ..+++.++..++++++.+.|++. ++++. +...++.+++...
T Consensus 288 ~~~~~~aa~~aal~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~~~----------------- 345 (409)
T 3kki_A 288 LLPYEAAGLETTLEIIE--SADNRRQHLDRMARKLRIGLSQL-GLTIR--SESQIIGLETGDE----------------- 345 (409)
T ss_dssp CCHHHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHTT-TCCCC--CSSSEEEEEEESH-----------------
T ss_pred CcHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHc-CCccC--CCCCEEEEEeCCH-----------------
Confidence 00 11123333444332 22567778889999999999987 67654 3556777776432
Q ss_pred hHHHHHHHHHHHHHHHHhcCcEEEeee---eECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 010125 449 EEEQINEFNRELLESINASGKAYMTHA---VLGGIYAIRFATGATLTEKRHVVVAWTVVQQHLEA 510 (517)
Q Consensus 449 ~~~~~~~~~~~l~~~l~~~g~~~~~~~---~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~ 510 (517)
....++.++|.++|++..... ...+..++|+++. ..++++||++++++|+++.+.
T Consensus 346 ------~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~-~~~t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 346 ------RNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLN-SDVNDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp ------HHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEECC-TTCCHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEcc-CCCCHHHHHHHHHHHHHHHhc
Confidence 223567777888886532211 2245689999984 567888999999999988764
No 98
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=99.91 E-value=1e-22 Score=207.47 Aligned_cols=324 Identities=11% Similarity=0.033 Sum_probs=217.7
Q ss_pred HHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhc
Q 010125 107 AGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIG 186 (517)
Q Consensus 107 ~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g 186 (517)
+..+.+.+...+......|.. .. .++++.+.+++.+.+|.+... ...++|+|||+|+..++.+...
T Consensus 38 ~~~v~~a~~~~~~~~~~~y~~-~~-~~lr~~la~~~~~~~~~~~~~-----~~i~~t~g~~~a~~~~~~~~~~------- 103 (377)
T 3fdb_A 38 CPAVLQAITDAVQREAFGYQP-DG-SLLSQATAEFYADRYGYQARP-----EWIFPIPDVVRGLYIAIDHFTP------- 103 (377)
T ss_dssp CHHHHHHHHHHHHTTCCSSCC-SS-CCHHHHHHHHHHHHHCCCCCG-----GGEEEESCHHHHHHHHHHHHSC-------
T ss_pred CHHHHHHHHHHHHcCCCCCCC-CC-HHHHHHHHHHHHHHhCCCCCH-----HHEEEeCChHHHHHHHHHHhcC-------
Confidence 344555555555443445554 44 789999999999998865331 3789999999999887776532
Q ss_pred ccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 187 RENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 187 ~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
+++.|++..++|.++..+++..|+ +++.+|++. + +|+++|++++++++ .+|+++.++|++|.+
T Consensus 104 ----~gd~vl~~~~~~~~~~~~~~~~g~---~~~~~~~~~--~--~d~~~l~~~l~~~~------~~v~i~~p~nptG~~ 166 (377)
T 3fdb_A 104 ----AQSKVIVPTPAYPPFFHLLSATQR---EGIFIDATG--G--INLHDVEKGFQAGA------RSILLCNPYNPLGMV 166 (377)
T ss_dssp ----TTCCEEEEESCCTHHHHHHHHHTC---CEEEEECTT--S--CCHHHHHHHHHTTC------CEEEEESSBTTTTBC
T ss_pred ----CCCEEEEcCCCcHhHHHHHHHcCC---EEEEccCCC--C--CCHHHHHHHhccCC------CEEEEeCCCCCCCCC
Confidence 445678888999999999999999 999999975 2 99999999998653 378888899999998
Q ss_pred cC---hhHHHHHHHHhCCeEEcccccccccccC-ccccccccCC--CCCCeeeeccccccC-CCCcceEEEEeCchhHHh
Q 010125 267 DP---LKPLCDVAKQFGIWVHVDAAYAGSACIC-PEFRHFIDGV--EGADSFSLNAHKWFF-ATLDCCCLWVKDPRALVS 339 (517)
Q Consensus 267 dp---l~eI~~i~~~~gi~lhvDaA~g~~~~~~-~~~~~~~~g~--~~aDsi~~~~hK~l~-~p~~~g~l~~~~~~~~~~ 339 (517)
-| +++|+++|++||+++|+|++|+.+.... ...... ..+ ...+.+..++||+++ .+..+|++++.++....
T Consensus 167 ~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~-~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~- 244 (377)
T 3fdb_A 167 FAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAG-VSDTAASVCITITAPSKAWNIAGLKCAQIIFSNPSDAE- 244 (377)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGG-SCHHHHHHEEEEECSTTTTTCGGGCCEEEECCSHHHHH-
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccH-HHccCCCcEEEEEeChHhccCcchhheEEEeCCHHHHH-
Confidence 64 6777788999999999999998755432 111111 111 123467888999996 44678877776655432
Q ss_pred hhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEe
Q 010125 340 SLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNY--GVANLRHFLRSHVNMAKLFERLVSG-DKRFEIV 416 (517)
Q Consensus 340 ~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~--g~~g~~~~i~~~~~~a~~l~~~l~~-~~~~~l~ 416 (517)
.+.....+.. .....+..+++...+ +.+.++++.++..++++++.+.|++ +|++++.
T Consensus 245 ~~~~~~~~~~--------------------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 304 (377)
T 3fdb_A 245 HWQQLSPVIK--------------------DGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKIT 304 (377)
T ss_dssp HHHHSCHHHH--------------------CCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEEC
T ss_pred HHHHHHHhhc--------------------CCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEe
Confidence 2211111000 011223333333332 3566788889999999999999988 8899886
Q ss_pred cCCCeeEE-EEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhc-CcEEEeeeeEC--CEeEEEEEecCCCC
Q 010125 417 FPCHFAVV-CFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINAS-GKAYMTHAVLG--GIYAIRFATGATLT 492 (517)
Q Consensus 417 ~~~~~~~v-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~--g~~~lR~~~~~~~t 492 (517)
.+..+.+ ++.+..... ..++.+.+.++ |+...++..+. +..++|++++ +
T Consensus 305 -~~~~~~~~~~~~~~~~~-----------------------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~---~ 357 (377)
T 3fdb_A 305 -PMQATYLMWIDFRDTTI-----------------------EGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFA---T 357 (377)
T ss_dssp -CCSBCSEEEEECTTSCC-----------------------CSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECC---S
T ss_pred -cCCeeEEEEEECcccCC-----------------------CHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeC---C
Confidence 4444444 455543210 12334444444 76544333222 3578999985 3
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 010125 493 EKRHVVVAWTVVQQHLEA 510 (517)
Q Consensus 493 ~~~di~~l~~~l~~~~~~ 510 (517)
+++++++++++|.++.++
T Consensus 358 ~~e~i~~~l~~l~~~l~~ 375 (377)
T 3fdb_A 358 SREVLEEAIDRMAKAVSH 375 (377)
T ss_dssp CHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHhh
Confidence 788999999999887643
No 99
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.91 E-value=1.7e-23 Score=215.62 Aligned_cols=340 Identities=12% Similarity=0.066 Sum_probs=218.7
Q ss_pred cceeCCCCCChHHHHHHHHHhcccc-cccccc------cChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchH
Q 010125 96 YFAYFPSSGSIAGFLGEMLSSGFNI-VGFNWI------SSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCE 168 (517)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~n~-~~~~~~------~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~ 168 (517)
++.+..+.+..+..+.+.+...+.. ....|. ..+....+|+.+++++++++|.++. -+++++||+
T Consensus 25 ~i~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~~--------~i~~~sGt~ 96 (407)
T 2dkj_A 25 GLELIASENFVSKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAWA--------NVQPHSGSQ 96 (407)
T ss_dssp SEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE--------ECCCSSHHH
T ss_pred ceeeccCCCCCCHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCcc--------eEEecchHH
Confidence 4444443333355666666666532 222222 3344447777777899999998743 255556788
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHH---HHHHHHcCCCCCCEEEEecCCC-CCcccCHHHHHHHHHHh
Q 010125 169 AILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCAL---QKAAQIVGIDVKNFRAIKTTKS-SSYGLSPDSLMAQINSD 244 (517)
Q Consensus 169 a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~---~kaa~~~G~g~~~v~~vp~d~~-~~~~~d~~~Le~~i~~~ 244 (517)
|+..++.++.. ++..|++++.+|.++ ..+++..|. .++.++++.+ +++.+|+++|++++++.
T Consensus 97 a~~~~~~~~~~-----------~gd~Vl~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 162 (407)
T 2dkj_A 97 ANMAVYMALME-----------PGDTLMGMDLAAGGHLTHGSRVNFSGK---LYKVVSYGVRPDTELIDLEEVRRLALEH 162 (407)
T ss_dssp HHHHHHHHHCC-----------TTCEEEEECGGGTCCGGGTCTTSHHHH---HSEEEEECCCTTTSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-----------CCCEEEEecccccCccchHHHHHhcCc---eEEEEecCCCcccCccCHHHHHHHHhhc
Confidence 88888776632 456788888999877 455566665 4555555321 25789999999999752
Q ss_pred HhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCC
Q 010125 245 VEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATL 324 (517)
Q Consensus 245 ~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~ 324 (517)
. +.+|+++.+++ |.+.|+++|.++|++||+++|+|++|+.++........ .++.+|+++.++||++++|.
T Consensus 163 ~-----~~~v~~~~p~~--~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~---~~~~~di~~~s~sK~l~g~~ 232 (407)
T 2dkj_A 163 R-----PKVIVAGASAY--PRFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPN---PLPYAHVVTSTTHKTLRGPR 232 (407)
T ss_dssp C-----CSEEEECCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCC---CTTTCSEEEEESSGGGCCCS
T ss_pred C-----CeEEEEecccc--CCCCCHHHHHHHHHHcCCEEEEEccccccccccCccCC---ccccccEEEEeccccCCCCC
Confidence 1 22566655555 47889999999999999999999999875543322111 12358999999999998776
Q ss_pred cceEEEEeCchhHHhhhcC-CccccCCccccccccccCCCccccCCCCCC-chHHHHHHHHhcHHHHHHHHHHHHHHHHH
Q 010125 325 DCCCLWVKDPRALVSSLST-NPEYLKNKATESMQVVDYKDWQITLSRRFR-SLKLWFVIRNYGVANLRHFLRSHVNMAKL 402 (517)
Q Consensus 325 ~~g~l~~~~~~~~~~~~~~-~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~-al~~~~~l~~~g~~g~~~~i~~~~~~a~~ 402 (517)
+ |+++++++.... .+.. ...+. ..+.... ...+..+++....++++++.++..+++++
T Consensus 233 ~-G~~~~~~~~~~~-~l~~~~~~~~------------------~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~ 292 (407)
T 2dkj_A 233 G-GLILSNDPELGK-RIDKLIFPGI------------------QGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKR 292 (407)
T ss_dssp C-EEEEESCHHHHH-HHHHHHTTTT------------------CSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred c-eEEEECCHHHHH-HHHhhhcccc------------------cCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5 888887544322 2211 00010 0011111 12344555554456788999999999999
Q ss_pred HHHHHhcCCCeEEecC-CCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeee-----
Q 010125 403 FERLVSGDKRFEIVFP-CHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAV----- 476 (517)
Q Consensus 403 l~~~l~~~~~~~l~~~-~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~----- 476 (517)
+.+.|++. +++++.+ ...+++++.+...+ .....+.+.|.+.|+....+..
T Consensus 293 l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~l~~~gi~v~~~~~~~~~~ 349 (407)
T 2dkj_A 293 LAEELARR-GYRIVTGGTDNHLFLVDLRPKG----------------------LTGKEAEERLDAVGITVNKNAIPFDPK 349 (407)
T ss_dssp HHHHHHHT-TCEEGGGSCSSSEEEEECGGGT----------------------CCHHHHHHHHHHTTEECEECCCTTCSS
T ss_pred HHHHHHhC-CceeecCCCCceEEEEECcccC----------------------CCHHHHHHHHHHcCceecCCcCccccc
Confidence 99999988 8888753 45677777775311 0124566677777865443321
Q ss_pred -ECCEeEEEEEecCC---CCcHHHHHHHHHHHHHHHHH
Q 010125 477 -LGGIYAIRFATGAT---LTEKRHVVVAWTVVQQHLEA 510 (517)
Q Consensus 477 -~~g~~~lR~~~~~~---~t~~~di~~l~~~l~~~~~~ 510 (517)
.....++|+++..+ ..+++|+++++++|+++.++
T Consensus 350 ~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 350 PPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp CTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred cccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 11245799998532 25778999999999988766
No 100
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.90 E-value=7.3e-24 Score=216.19 Aligned_cols=306 Identities=11% Similarity=-0.005 Sum_probs=196.3
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEE-cCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHH
Q 010125 128 SPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVI-QGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQ 206 (517)
Q Consensus 128 sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~-t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~ 206 (517)
++.+.++-+++++.+++++|.++.. ..+| |+|||+++.+++..... +++.+++....|++.
T Consensus 67 ~~~~~~~~~~ar~~la~ll~~~~~~------evif~t~~~T~a~n~ai~~l~~-----------~gd~v~~~~~~~~~~- 128 (386)
T 3qm2_A 67 GKEFIQVAEEAEQDFRDLLNIPSNY------KVLFCHGGGRGQFAGVPLNLLG-----------DKTTADYVDAGYWAA- 128 (386)
T ss_dssp ------CCHHHHHHHHHHHTCCTTE------EEEEEESCTTHHHHHHHHHHCT-----------TCCEEEEEESSHHHH-
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCc------eEEEEcCCchHHHHHHHHhccC-----------CCCeEEEEeCCHHHH-
Confidence 4555666678899999999997532 5777 69999999888765421 222332222345543
Q ss_pred HHHHHc-CCCCCCEEEEecC--CCCCcc-cCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc-cChhHHHHHHHHhCC
Q 010125 207 KAAQIV-GIDVKNFRAIKTT--KSSSYG-LSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV-DPLKPLCDVAKQFGI 281 (517)
Q Consensus 207 kaa~~~-G~g~~~v~~vp~d--~~~~~~-~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i-dpl~eI~~i~~~~gi 281 (517)
++...+ ..| .+..+|++ . .|. +++++++++|+++++ +|.+++.+|.+|.+ +|+++|+ +|+
T Consensus 129 ~~~~~a~~~G--~v~~v~~~~~~--~G~~~~~~~~~~~l~~~t~------lV~~~h~et~tG~~i~pi~~i~-----~g~ 193 (386)
T 3qm2_A 129 SAIKEAKKYC--APQIIDAKITV--DGKRAVKPMREWQLSDNAA------YLHYCPNETIDGIAIDETPDFG-----PEV 193 (386)
T ss_dssp HHHHHHTTTS--EEEEEECEEEE--TTEEEECCGGGCCCCTTCS------CEEECSEETTTTEECCCCCCCC-----TTC
T ss_pred HHHHHHHHhC--CeEEEecCccc--CCCCCCchHHHhhcCCCCc------EEEEECCcCCcCEecCchhhhc-----CCC
Confidence 233322 234 58889987 3 234 788888877766554 68889999999995 9999996 899
Q ss_pred eEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCccccCCccccccccccC
Q 010125 282 WVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDY 361 (517)
Q Consensus 282 ~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~ 361 (517)
++|||++++.+..+.+-. ..|.+++++|||++ |.|+|++++|+... .+.-...+.++..... ...
T Consensus 194 ~~~vDa~qs~g~~pidv~--------~~~~~~~s~hK~lG-P~G~g~l~v~~~~~-~~~~~~~p~~~~~~~~-----~~~ 258 (386)
T 3qm2_A 194 VVTADFSSTILSAPLDVS--------RYGVIYAGAQKNIG-PAGLTLVIVREDLL-GKAHESCPSILDYTVL-----NDN 258 (386)
T ss_dssp CEEEECTTTTTSSCCCGG--------GCSEEEEETTTTTC-CTTEEEEEEEGGGC-SCCCTTSCGGGCHHHH-----HHC
T ss_pred EEEEEcccccCCCCCCcc--------ccCEEEEecccccC-CCccEEEEECHHHH-hhhcccCCcHHHHHHH-----hhc
Confidence 999999998888766421 33567899999995 99999999987642 1111111222210000 000
Q ss_pred CCccccCCCC-CCchHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHhcCCCe-EEecCC--Ce-eEEEEEecCCCcch
Q 010125 362 KDWQITLSRR-FRSLKLWFVIRNYGVA-NLRHFLRSHVNMAKLFERLVSGDKRF-EIVFPC--HF-AVVCFRVSPSPVLM 435 (517)
Q Consensus 362 ~~~~~~~sr~-~~al~~~~~l~~~g~~-g~~~~i~~~~~~a~~l~~~l~~~~~~-~l~~~~--~~-~~v~f~~~~~~~~~ 435 (517)
. ... .+-. +..+.+-.+++.+-.. |++++.++..++++++++.|+++ ++ ....++ .+ .+++|.+....
T Consensus 259 ~-~~~-gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~-~~~~~~~~~~~rs~~iv~f~~~~~~--- 332 (386)
T 3qm2_A 259 D-SMF-NTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNS-DFYRNDVAQANRSRMNVPFQLADNT--- 332 (386)
T ss_dssp ---------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTC-SSEECCBCGGGBCSSEEEEEESSGG---
T ss_pred C-CCC-CCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCHHHcCceEEEEECCCcc---
Confidence 0 000 0111 2334666777777677 89999999999999999999988 55 322222 23 58899986421
Q ss_pred hhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 010125 436 DKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHLEA 510 (517)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~ 510 (517)
....+...|.+.|++...+ ......+|+|+. ..++++||+++++.|+++.++
T Consensus 333 --------------------~~~~~~~~L~~~gI~~~~g--~~~~~~iRiS~~-~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 333 --------------------LDKVFLEESFAAGLHALKG--HRVVGGMRASIY-NAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp --------------------GHHHHHHHHHHTTEECCBC--CTTTCSEEEECC-TTSCHHHHHHHHHHHHHHHHH
T ss_pred --------------------ccHHHHHHHHHCCCEEeCC--CCCcCeEEEEcC-CCCCHHHHHHHHHHHHHHHHh
Confidence 0134555677778653222 111235999985 577888999999999988764
No 101
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=99.90 E-value=7.7e-23 Score=207.80 Aligned_cols=286 Identities=13% Similarity=0.080 Sum_probs=200.2
Q ss_pred HHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHHcCCCC
Q 010125 137 IVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQIVGIDV 216 (517)
Q Consensus 137 ~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~ 216 (517)
++++++++++|.++. ...++|+|||+|+..++.+... +++.|++...+|.++..+++..|+
T Consensus 71 ~l~~~la~~~g~~~~------~~i~~~~g~t~a~~~~~~~~~~-----------~gd~Vl~~~~~~~~~~~~~~~~g~-- 131 (367)
T 3euc_A 71 ALRAKLKEVMQVPAG------MEVLLGNGSDEIISMLALAAAR-----------PGAKVMAPVPGFVMYAMSAQFAGL-- 131 (367)
T ss_dssp HHHHHHHHHHTCCTT------CEEEEEEHHHHHHHHHHHHTCC-----------TTCEEEEEESCSCCSCHHHHTTTC--
T ss_pred HHHHHHHHHhCCCCc------ceEEEcCCHHHHHHHHHHHHcC-----------CCCEEEEcCCCHHHHHHHHHHcCC--
Confidence 445667777788321 2689999999999887765522 456688888999999999999999
Q ss_pred CCEEEEecCCCCCcccCHHHHHHHHHH-hHhcCCcceEEEeeccCCccccc---cChhHHHHHHHHh--CCeEEcccccc
Q 010125 217 KNFRAIKTTKSSSYGLSPDSLMAQINS-DVEVGLIPLFLCATIGTTAITAV---DPLKPLCDVAKQF--GIWVHVDAAYA 290 (517)
Q Consensus 217 ~~v~~vp~d~~~~~~~d~~~Le~~i~~-~~~~g~~p~~vv~t~gtt~~G~i---dpl~eI~~i~~~~--gi~lhvDaA~g 290 (517)
+++.+|+++ ++.+|+++|++++++ +++ +|+++.++|++|.+ +++++|+++|++| |+++|+|++|+
T Consensus 132 -~~~~v~~~~--~~~~d~~~l~~~l~~~~~~------~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~ 202 (367)
T 3euc_A 132 -EFVGVPLRA--DFTLDRGAMLAAMAEHQPA------IVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQ 202 (367)
T ss_dssp -EEEEEECCT--TSCCCHHHHHHHHHHHCCS------EEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTC
T ss_pred -eEEEecCCC--CCCCCHHHHHHHhhccCCC------EEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcch
Confidence 999999985 579999999999987 333 77778999999998 4588888889999 99999999998
Q ss_pred cccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCccccCCccccccccccCCCccccCCC
Q 010125 291 GSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSR 370 (517)
Q Consensus 291 ~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr 370 (517)
.+.. ......+. ....+.+..++||++..+.++|+++++ +... +.+... .. .++
T Consensus 203 ~~~~--~~~~~~~~-~~~~~i~~~s~sK~~~~G~r~G~~~~~-~~~~-~~~~~~----~~------------~~~----- 256 (367)
T 3euc_A 203 PFAQ--ESWMSRLT-DFGNLLVMRTVSKLGLAGIRLGYVAGD-PQWL-EQLDKV----RP------------PYN----- 256 (367)
T ss_dssp CSSS--CCSGGGGG-TCTTEEEEEECCCTTSCSCCEEEEEEC-HHHH-HHHGGG----CC------------SSC-----
T ss_pred hhcc--cchHHHHh-hCCCEEEEecchhhcccccCceeeeeC-HHHH-HHHHHh----CC------------CCC-----
Confidence 7542 11111111 123457788899995555678888874 3322 222110 00 000
Q ss_pred CCCchHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCeeEEEEEecCCCcchhhhhhhhhccccch
Q 010125 371 RFRSLKLWFVIRNYG-VANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSE 449 (517)
Q Consensus 371 ~~~al~~~~~l~~~g-~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~ 449 (517)
...+..+++...+. .+.++++.++..++++++.+.|+++|++++. ++..+++.+.+. .
T Consensus 257 -~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~~~~~~~~~~-~------------------ 315 (367)
T 3euc_A 257 -VNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEGMAAHGGVTVF-PSAANFLLARVP-D------------------ 315 (367)
T ss_dssp -CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSTTCEEC-CCSSSEEEEECS-C------------------
T ss_pred -CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCeEEEEECC-C------------------
Confidence 12333333333332 4567888899999999999999999999854 555666666654 2
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEeeeeE--CCEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 010125 450 EEQINEFNRELLESINASGKAYMTHAVL--GGIYAIRFATGATLTEKRHVVVAWTVVQQHL 508 (517)
Q Consensus 450 ~~~~~~~~~~l~~~l~~~g~~~~~~~~~--~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~ 508 (517)
..++.+.|.++|+.......+ .+..++|+++. +++|+++++++|+++.
T Consensus 316 -------~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~----~~~~i~~~~~~l~~~l 365 (367)
T 3euc_A 316 -------AAQTFDRLLARKVLIKNVSKMHPLLANCLRVTVS----TPEENAQFLEAFAASL 365 (367)
T ss_dssp -------HHHHHHHHHTTTEECEECGGGCGGGTTEEEEECC----CHHHHHHHHHHHHHHT
T ss_pred -------HHHHHHHHHHCCeEEEECCccCCCCCCEEEEecC----CHHHHHHHHHHHHHHh
Confidence 245667777888754433322 23468999974 7789999999998764
No 102
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.90 E-value=3.8e-23 Score=212.73 Aligned_cols=343 Identities=11% Similarity=-0.022 Sum_probs=214.3
Q ss_pred CccceeCCCCCChHHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEE-cCCchHHHHH
Q 010125 94 PNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVI-QGTTCEAILC 172 (517)
Q Consensus 94 p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~-t~ggt~a~~~ 172 (517)
|..+.+.+++..+|..+.+.+....+........+|....+.+++++++++++|.++.. .+++ |+|||+|+..
T Consensus 39 ~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~------~i~~~t~g~t~al~~ 112 (398)
T 2fyf_A 39 PRDGRFGSGPSKVRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGY------EVILGNGGATAFWDA 112 (398)
T ss_dssp CSSCBCCSSSCCCCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTC------EEEEEETCHHHHHHH
T ss_pred cCCccccCCCCCCCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCc------eEEEeCCchhHHHHH
Confidence 33444445555555555555554322211111235666777888999999999997421 5787 9999999988
Q ss_pred HHHHHHHHHHHHhcccCCCCeEEEeCCCCchH-HHHHHHHc--CCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCC
Q 010125 173 TLTAARDRVLNKIGRENISKLIVYGSDQTHCA-LQKAAQIV--GIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGL 249 (517)
Q Consensus 173 al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s-~~kaa~~~--G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~ 249 (517)
++.+..+ ++ +++++...|.. ....+... |. +++.||++. +..++. + +++
T Consensus 113 ~~~~l~~-----------~g-v~~v~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~--g~~~~~-~----i~~------ 164 (398)
T 2fyf_A 113 AAFGLID-----------KR-SLHLTYGEFSAKFASAVSKNPFVG---EPIIITSDP--GSAPEP-Q----TDP------ 164 (398)
T ss_dssp HHHHTCS-----------SC-EEEEECSHHHHHHHHHHHHCTTSC---CCEEEECCT--TCCCCC-C----CCT------
T ss_pred HHHHhcC-----------CC-eEEEeCCHHHHHHHHHHHHhCCCC---ceEEEecCC--CCCCCc-c----ccC------
Confidence 8776521 34 23334445532 23345666 55 788999872 223332 1 222
Q ss_pred cceEEEeeccCCccccccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEE
Q 010125 250 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL 329 (517)
Q Consensus 250 ~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l 329 (517)
.+.+|+++.++|++|.+.|+++|.++ ||+|+|+|+||+.+....+ +..+|++++++||+++.|.++|++
T Consensus 165 ~~~~v~~~~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~~~~--------~~~~di~~~s~sK~~~~~gg~g~l 233 (398)
T 2fyf_A 165 SVDVIAWAHNETSTGVAVAVRRPEGS---DDALVVIDATSGAGGLPVD--------IAETDAYYFAPQKNFASDGGLWLA 233 (398)
T ss_dssp TCSEEEEESEETTTTEECCCCCCTTC---C-CEEEEECTTTTTTSCCC--------GGGCSEEEECTTSTTCSCSSEEEE
T ss_pred CCCEEEEeCcCCCcceecchHHhhhh---cCCeEEEEeccccCCcccC--------cccCcEEEEecCcccCCCCceEEE
Confidence 24478888999999999999999988 8999999999987653321 125899999999999988678888
Q ss_pred EEeCchhHHhhh------cCCccccCCccccccccccCCCccccCCCC-CCchHHHHHHHHhcHHH-HHHHHHHHHHHHH
Q 010125 330 WVKDPRALVSSL------STNPEYLKNKATESMQVVDYKDWQITLSRR-FRSLKLWFVIRNYGVAN-LRHFLRSHVNMAK 401 (517)
Q Consensus 330 ~~~~~~~~~~~~------~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~-~~al~~~~~l~~~g~~g-~~~~i~~~~~~a~ 401 (517)
+++++. ..... ...+.|+...... .... ..... .+.. .....+..+++.+..+| ++++.++..++++
T Consensus 234 ~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~-~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~ 308 (398)
T 2fyf_A 234 IMSPAA-LSRIEAIAATGRWVPDFLSLPIAV--ENSL-KNQTY-NTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQ 308 (398)
T ss_dssp EECHHH-HHHHHHHHHTTCCCCGGGCHHHHH--HHHT-TTCCS-SCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred EECHHH-HHHhhcccccCCCCCcEEehHHHh--hhcc-cCCCC-CCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 886542 22110 0012333211000 0000 00000 1111 11234555666655555 8899999999999
Q ss_pred HHHHHHhcCCCeEEec-CC--Cee-EEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeE
Q 010125 402 LFERLVSGDKRFEIVF-PC--HFA-VVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVL 477 (517)
Q Consensus 402 ~l~~~l~~~~~~~l~~-~~--~~~-~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~ 477 (517)
++.+.|+++|+++++. .| ..+ +++|++... . ...++.+.|.++|+.+..+...
T Consensus 309 ~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~----------------------~~~~l~~~L~~~gI~v~~g~~~ 365 (398)
T 2fyf_A 309 RLYSWAQERPYTTPFVTDPGLRSQVVGTIDFVDD-V----------------------DAGTVAKILRANGIVDTEPYRK 365 (398)
T ss_dssp HHHHHHHHSTTEEESCCSGGGBCSSEEEEEECTT-S----------------------CHHHHHHHHHHTTCBCCSCCTT
T ss_pred HHHHHHHHcCCceeccCChhhcCCcEEEEECCCC-C----------------------CHHHHHHHHHHCCcEEecCccc
Confidence 9999999988998874 23 355 788887421 0 1346777777778755332111
Q ss_pred CCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 010125 478 GGIYAIRFATGATLTEKRHVVVAWTVVQQHLEA 510 (517)
Q Consensus 478 ~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~ 510 (517)
.+..++|+++. ..++++|+++++++|+++.++
T Consensus 366 ~~~~~iRis~~-~~~t~e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 366 LGRNQLRVAMF-PAVEPDDVSALTECVDWVVER 397 (398)
T ss_dssp TCSSEEEEECC-TTSCHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEec-CCCCHHHHHHHHHHHHHHHHh
Confidence 23468999995 467888999999999887654
No 103
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.90 E-value=2.5e-22 Score=203.88 Aligned_cols=312 Identities=13% Similarity=0.079 Sum_probs=211.6
Q ss_pred HHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhc
Q 010125 107 AGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIG 186 (517)
Q Consensus 107 ~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g 186 (517)
+..+.+.+...+.. ...|.... ..+ +++++++++|.+++ ..++|+|||+|+..++.+..+
T Consensus 45 ~~~v~~a~~~~~~~-~~~y~~~~-~~~----lr~~la~~~~~~~~-------~v~~~~g~~~a~~~~~~~l~~------- 104 (365)
T 3get_A 45 PPKAIECLRQNANK-AHLYPDDS-MIE----LKSTLAQKYKVQNE-------NIIIGAGSDQVIEFAIHSKLN------- 104 (365)
T ss_dssp CHHHHHHHHHHGGG-TTSCCCTT-CHH----HHHHHHHHHTCCGG-------GEEEESSHHHHHHHHHHHHCC-------
T ss_pred CHHHHHHHHHHHHh-hccCCCCC-hHH----HHHHHHHHhCCCcc-------eEEECCCHHHHHHHHHHHHhC-------
Confidence 34455555555442 23343322 234 44566677787654 689999999999887766532
Q ss_pred ccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 187 RENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 187 ~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
+++.|+++.++|.++..+++..|+ +++.+|++ ++++ +|+++|++++++++ .+|+++.++|++|.+
T Consensus 105 ----~gd~vl~~~~~~~~~~~~~~~~g~---~~~~v~~~-~~~~-~d~~~l~~~l~~~~------~~v~~~~p~nptG~~ 169 (365)
T 3get_A 105 ----SKNAFLQAGVTFAMYEIYAKQCGA---KCYKTQSI-THNL-DEFKKLYETHKDEI------KLIFLCLPNNPLGEC 169 (365)
T ss_dssp ----TTCEEEECSSCCTHHHHHHHHHTC---EEEECSSS-SCCH-HHHHHHHHHTTTTE------EEEEEESSCTTTCCC
T ss_pred ----CCCEEEEeCCChHHHHHHHHHcCC---EEEEEecC-CCCC-CCHHHHHHHhCCCC------CEEEEcCCCCCCCCC
Confidence 556788999999999999999999 99999982 2368 99999999997543 377888999999999
Q ss_pred cChhHHHHHHH--HhCCeEEcccccccccc--cCcccccccc--CCCCCCeeeeccccccC-CCCcceEEEEeCchhHHh
Q 010125 267 DPLKPLCDVAK--QFGIWVHVDAAYAGSAC--ICPEFRHFID--GVEGADSFSLNAHKWFF-ATLDCCCLWVKDPRALVS 339 (517)
Q Consensus 267 dpl~eI~~i~~--~~gi~lhvDaA~g~~~~--~~~~~~~~~~--g~~~aDsi~~~~hK~l~-~p~~~g~l~~~~~~~~~~ 339 (517)
-|++++.++++ ++|+++++|++|+.+.+ .......... +....+.++.++||+++ .+.++|++++ +++...
T Consensus 170 ~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~-~~~~~~- 247 (365)
T 3get_A 170 LDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIA-NANIIS- 247 (365)
T ss_dssp CCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEE-CHHHHH-
T ss_pred cCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEc-CHHHHH-
Confidence 99999999988 78999999999986552 2111111110 11245577889999997 5567898888 343322
Q ss_pred hhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC
Q 010125 340 SLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNY-GVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFP 418 (517)
Q Consensus 340 ~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~-g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~ 418 (517)
.+...... ++ ...+..+++...+ ..+.++++.++..++++++.+.|++. ++++. +
T Consensus 248 ~~~~~~~~----------------~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~-~ 303 (365)
T 3get_A 248 AFYKLRAP----------------FN------VSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFAKKH-NIKII-D 303 (365)
T ss_dssp HHHHHSCT----------------TC------SCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEC-C
T ss_pred HHHHhcCC----------------CC------cCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCEEC-C
Confidence 22110000 00 1233333333333 23667888899999999999999988 88875 5
Q ss_pred CCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHH
Q 010125 419 CHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVV 498 (517)
Q Consensus 419 ~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~ 498 (517)
+..+++.+.+... ...++.+.|.++|+...++..+. ..++|++++ +++|++
T Consensus 304 ~~~~~~~~~~~~~------------------------~~~~~~~~l~~~gi~v~~g~~~~-~~~iRis~~----~~~~i~ 354 (365)
T 3get_A 304 SYTNFITYFFDEK------------------------NSTDLSEKLLKKGIIIRNLKSYG-LNAIRITIG----TSYENE 354 (365)
T ss_dssp CSSSEEEEECSSS------------------------CHHHHHHHHHTTTEECEECGGGT-CSEEEEECC----CHHHHH
T ss_pred CCCeEEEEECCCC------------------------CHHHHHHHHHHCCEEEEECccCC-CCEEEEEcC----CHHHHH
Confidence 5556666665431 13466777778886544433333 578999984 678999
Q ss_pred HHHHHHHHHH
Q 010125 499 VAWTVVQQHL 508 (517)
Q Consensus 499 ~l~~~l~~~~ 508 (517)
+++++|+++.
T Consensus 355 ~l~~~l~~~l 364 (365)
T 3get_A 355 KFFTEFDKIL 364 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 104
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.90 E-value=2.6e-23 Score=213.35 Aligned_cols=309 Identities=12% Similarity=0.095 Sum_probs=204.6
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHH
Q 010125 127 SSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQ 206 (517)
Q Consensus 127 ~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~ 206 (517)
.++...++++.+. +++|.+ .+++++|||+|+..++.+++-. +++.|+++..+|.++.
T Consensus 54 ~~~~~~~l~~~la----~~~~~~---------~~i~~~~gt~al~~~l~~~~~~----------~gd~vl~~~~~~~~~~ 110 (391)
T 3dr4_A 54 VGRFIVEFEKAFA----DYCGVK---------HAIACNNGTTALHLALVAMGIG----------PGDEVIVPSLTYIASA 110 (391)
T ss_dssp CSHHHHHHHHHHH----HHHTCS---------EEEEESSHHHHHHHHHHHHTCC----------TTCEEEEESSSCTHHH
T ss_pred CChHHHHHHHHHH----HHhCCC---------cEEEeCCHHHHHHHHHHHcCCC----------CcCEEEECCCchHHHH
Confidence 4566666665554 555554 4789999999998888766211 5667889999999999
Q ss_pred HHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEcc
Q 010125 207 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVD 286 (517)
Q Consensus 207 kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvD 286 (517)
.+++..|+ +++.+|++++ ++.+|+++|+++++++++ +|+ .++++|.+.|+++|+++|++||+++|+|
T Consensus 111 ~~~~~~g~---~~~~~~~~~~-~~~~d~~~l~~~~~~~~~------~v~---~~n~tG~~~~~~~i~~l~~~~~~~li~D 177 (391)
T 3dr4_A 111 NSVTYCGA---TPVLVDNDPR-TFNLDAAKLEALITPRTK------AIM---PVHLYGQICDMDPILEVARRHNLLVIED 177 (391)
T ss_dssp HHHHHTTC---EEEEECBCTT-TCSBCGGGSGGGCCTTEE------EEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHCCC---EEEEEecCcc-ccCcCHHHHHHhcCCCce------EEE---EECCCCChhhHHHHHHHHHHcCCEEEEE
Confidence 99999999 9999999853 589999999998875432 444 3568999999999999999999999999
Q ss_pred cccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCccccCCccccccccccCCCccc
Q 010125 287 AAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQI 366 (517)
Q Consensus 287 aA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~ 366 (517)
+||+.+....+.. ...+..+++++++.||+++.+ .+|+++++++.... .+.....+ ... .. ...+..
T Consensus 178 ~a~~~g~~~~~~~---~~~~~di~~~S~s~~K~l~~g-~gg~~~~~~~~~~~-~~~~~~~~---g~~-~~----~~~~~~ 244 (391)
T 3dr4_A 178 AAEAVGATYRGKK---SGSLGDCATFSFFGNAIITTG-EGGMITTNDDDLAA-KMRLLRGQ---GMD-PN----RRYWFP 244 (391)
T ss_dssp CTTCTTCEETTEE---TTSSSSEEEEECBTTSSSCCB-SCEEEEESCHHHHH-HHHHHHBT---TCC-TT----STTCCS
T ss_pred CcccccceECCee---ecccCCEEEEECCCCCcCCcC-CeEEEEECCHHHHH-HHHHHHhc---CCC-CC----Cccccc
Confidence 9998655443221 111224556666688999764 46666666654322 11100000 000 00 000011
Q ss_pred cCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC--C-----CeeEEEEEecCCCcchhhhh
Q 010125 367 TLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFP--C-----HFAVVCFRVSPSPVLMDKLK 439 (517)
Q Consensus 367 ~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~--~-----~~~~v~f~~~~~~~~~~~~~ 439 (517)
..+..+....+.+++.....++++++.++..++++++.+.|+++ ++++... + ...++.+.+....
T Consensus 245 ~~g~~~~~~~l~aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~i~~~~~~------- 316 (391)
T 3dr4_A 245 IVGFNYRMTNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARL-GNRVTKPHVALTGRHVFWMYTVRLGEGL------- 316 (391)
T ss_dssp SCCCBCBCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHGGG-TTSEECCCCCTTSCCCCSSEEEEECSSC-------
T ss_pred ccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CccccCcCCCCCCcceeEEEEEEECCcc-------
Confidence 12233444556666655556788889999999999999999988 8877644 1 1223455554310
Q ss_pred hhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeee-------E-------------CCEeEEEEEecCCCCcHHHHHH
Q 010125 440 TKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAV-------L-------------GGIYAIRFATGATLTEKRHVVV 499 (517)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-------~-------------~g~~~lR~~~~~~~t~~~di~~ 499 (517)
+....++.+.|.++|+....+.. + .....+|+++ ++.++++||++
T Consensus 317 --------------~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~-~~~~t~edi~~ 381 (391)
T 3dr4_A 317 --------------STTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPT-HAGLTEADIDR 381 (391)
T ss_dssp --------------SSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECC-CTTCCHHHHHH
T ss_pred --------------chhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccC-CCCCCHHHHHH
Confidence 01135677778788875432210 0 0135799987 67889999999
Q ss_pred HHHHHHHH
Q 010125 500 AWTVVQQH 507 (517)
Q Consensus 500 l~~~l~~~ 507 (517)
+++.|+++
T Consensus 382 ~~~~l~~~ 389 (391)
T 3dr4_A 382 VIAALDQV 389 (391)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 99998764
No 105
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.90 E-value=1.5e-23 Score=219.13 Aligned_cols=292 Identities=13% Similarity=0.035 Sum_probs=191.7
Q ss_pred HHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHHc
Q 010125 133 ELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQIV 212 (517)
Q Consensus 133 ~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~~ 212 (517)
....++.+++++ +|.+. ..++|+|+|+||..++.++.. +++.|+++..+|.++..++...
T Consensus 57 ~~~~~~~~~la~-~g~~~--------~v~~~~G~t~a~~~~~~a~~~-----------~gd~Vlv~~~~h~s~~~~~~~~ 116 (446)
T 2x3l_A 57 EVILKSMKQVEK-HSDYD--------GYFLVNGTTSGILSVIQSFSQ-----------KKGDILMARNVHKSVLHALDIS 116 (446)
T ss_dssp SHHHHHHHHHCS-CTTEE--------EEEESSHHHHHHHHHHHTTTT-----------SSSCEEECTTCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHh-cCCCc--------eEEEeCCHHHHHHHHHHHhcC-----------CCCEEEEecCccHHHHHHHHHc
Confidence 345677789999 99863 578999999999988877632 5667899999999999999999
Q ss_pred CCCCCCEEEEecCCCCC----cccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEcccc
Q 010125 213 GIDVKNFRAIKTTKSSS----YGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAA 288 (517)
Q Consensus 213 G~g~~~v~~vp~d~~~~----~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA 288 (517)
|+ +++.++...+++ +.+|+++| +..+ +.+|+++. .|++|.+.|+++|+++|++||+|+|+|+|
T Consensus 117 G~---~~~~v~~~~~~~~~~~~~~d~~~l---~~~~------~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livDea 183 (446)
T 2x3l_A 117 QQ---EGHFIETHQSPLTNHYNKVNLSRL---NNDG------HKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLIDEA 183 (446)
T ss_dssp TC---CEEECEEEECTTTSSEEEEEC----------------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEECT
T ss_pred CC---eEEEEeCeeccccCcCCCCCHHHH---cCCC------ceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEcch
Confidence 99 999999822123 57898887 3322 33677777 56699999999999999999999999999
Q ss_pred cccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCccccCCccccccccccCCCccccC
Q 010125 289 YAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITL 368 (517)
Q Consensus 289 ~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~ 368 (517)
|++...+.+...... . .++|+++.++||+++++.++|++++++...-...+....... ...
T Consensus 184 ~~~~~~f~~~~~~~~-~-~g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~~~~~~~~~~~~-----------------~~~ 244 (446)
T 2x3l_A 184 HGAHFGLQGFPDSTL-N-YQADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIEYLSYF-----------------QTS 244 (446)
T ss_dssp TCTTTTSTTSCCCGG-G-GTCSEEEECHHHHSSSCTTCEEEEEETTCTTHHHHHHHHHHH-----------------SCS
T ss_pred hhhhhccCCCCCChH-H-cCCCEEEECCccccccccccEEEEEcCCcCCHHHHHHHHHHH-----------------cCC
Confidence 987332222101111 1 158999999999999999999999976532111110000000 001
Q ss_pred CCCCC-chHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCeeEEEEEecCCCcchhhhhhhhhcccc
Q 010125 369 SRRFR-SLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLL 447 (517)
Q Consensus 369 sr~~~-al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~ 447 (517)
+.... ..++..+++.+...+.+++.++..++++++++. +++++.+.....+++.+.+..
T Consensus 245 s~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l~~~l~~~-----g~~~~~~~~~~~l~i~~~~~~--------------- 304 (446)
T 2x3l_A 245 SPSYLIMASLESAAQFYKTYDSTLFFAKRAQLIECLENK-----GFEMLQVDDPLKLLIKYEGFT--------------- 304 (446)
T ss_dssp SCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-----TCEEEECSSTTEEEEECTTSC---------------
T ss_pred CchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-----CCEECcCCCCeEEEEEeCCcC---------------
Confidence 11111 123444555554444455777788888888776 677765432234666654210
Q ss_pred chHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 010125 448 SEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHLEAF 511 (517)
Q Consensus 448 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l 511 (517)
..++.+.|.++|+.. .. .+..++|++++ ..++++++ +++++|+++.+++
T Consensus 305 ---------~~~l~~~L~~~GI~v-~~---~g~~~iRi~~~-~~~t~e~i-~l~~aL~~~~~~~ 353 (446)
T 2x3l_A 305 ---------GHDIQNWFMNAHIYL-EL---ADDYQALAILP-LWHHDDTY-LFDSLLRKIEDMI 353 (446)
T ss_dssp ---------HHHHHHHHHHTTEEE-SE---ECSSCEEEECC-CCCTTCCC-CHHHHHHHHHTCC
T ss_pred ---------HHHHHHHHHHCCCEE-Ee---cCCCEEEEEee-cCCCHHHH-HHHHHHHHHHHhh
Confidence 245667777777643 21 23468999985 55677799 9999998886543
No 106
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.90 E-value=4.6e-22 Score=210.67 Aligned_cols=340 Identities=11% Similarity=0.056 Sum_probs=219.6
Q ss_pred ccccccChhhHHHHHHHHHHHHHHcC-CCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCC
Q 010125 122 GFNWISSPAATELENIVMDWLGQMLK-LPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQ 200 (517)
Q Consensus 122 ~~~~~~sp~~~~lE~~v~~~l~~l~g-~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~ 200 (517)
...|..+.+...+++++++|+.+..| ++.+. ..+++|+|+++|+..++.+..+. |.. +++.|+++.+
T Consensus 122 ~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~-----~~i~~t~G~~~ai~~~~~~l~~~-----gd~--~~d~Vlv~~p 189 (498)
T 3ihj_A 122 LGSYSASQGVNCIREDVAAYITRRDGGVPADP-----DNIYLTTGASDGISTILKILVSG-----GGK--SRTGVMIPIP 189 (498)
T ss_dssp ------CCSCHHHHHHHHHHHHHHTTTCCCCG-----GGEEEESSHHHHHHHHHHHHCCC-----CGG--GSEEEEEEES
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCc-----ccEEEcCCHHHHHHHHHHHHcCC-----CCC--CCCEEEEeCC
Confidence 45777788888999999999999885 64321 27899999999998777654321 100 2357899999
Q ss_pred CchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc---cChhHHHHHHH
Q 010125 201 THCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV---DPLKPLCDVAK 277 (517)
Q Consensus 201 ~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i---dpl~eI~~i~~ 277 (517)
.|.++..+++..|. +++.+++++++++.+|+++|+++|++... +..+.+|+++.++|+||.+ +++++|+++|+
T Consensus 190 ~y~~~~~~~~~~g~---~~v~~~~~~~~~~~~d~~~le~~l~~~~~-~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~ 265 (498)
T 3ihj_A 190 QYPLYSAVISELDA---IQVNYYLDEENCWALNVNELRRAVQEAKD-HCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAW 265 (498)
T ss_dssp CCTHHHHHHHHTTC---EEEEEECBGGGTTBCCHHHHHHHHHHHTT-TSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred CchhHHHHHHHcCC---EEEEeeccccccCCCCHHHHHHHHHhhhc-cCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHH
Confidence 99999999999999 99999998766789999999999987532 1235577778999999998 45788999999
Q ss_pred HhCCeEEcccccccccccCc-cccc---cccCC-----CCCCe-eeeccccccC--CCCcceEEEE--eCchhHHhhhcC
Q 010125 278 QFGIWVHVDAAYAGSACICP-EFRH---FIDGV-----EGADS-FSLNAHKWFF--ATLDCCCLWV--KDPRALVSSLST 343 (517)
Q Consensus 278 ~~gi~lhvDaA~g~~~~~~~-~~~~---~~~g~-----~~aDs-i~~~~hK~l~--~p~~~g~l~~--~~~~~~~~~~~~ 343 (517)
+||+++++|.+|+.+.+... .... ....+ ..... +..+++|.+. ....+|++.+ .++... +.+..
T Consensus 266 ~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~-~~l~~ 344 (498)
T 3ihj_A 266 EEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIK-GQLVK 344 (498)
T ss_dssp HHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHH-HHHHH
T ss_pred HcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHH-HHHHH
Confidence 99999999999987655321 1111 11101 12233 3457999994 5677888875 444432 22211
Q ss_pred C-ccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhc------------HHHHHHHHHHHHHHHHHHHHHHhcC
Q 010125 344 N-PEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYG------------VANLRHFLRSHVNMAKLFERLVSGD 410 (517)
Q Consensus 344 ~-~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g------------~~g~~~~i~~~~~~a~~l~~~l~~~ 410 (517)
. ..++ + ...+..++....+. .+...++.++..++++++.+.|+++
T Consensus 345 ~~~~~~-------------------~---~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 402 (498)
T 3ihj_A 345 LLSVRL-------------------C---PPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQV 402 (498)
T ss_dssp HHHHSC-------------------C---CCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHhccC-------------------C---CCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0 0000 0 02222222222221 1223456678888999999999999
Q ss_pred CCeEEecCCCeeEEEE-EecCCCcchhhhhhhhhccccchHHHHHHHHHH--HHHHHHhcCcEEEeeeeE---CCEeEEE
Q 010125 411 KRFEIVFPCHFAVVCF-RVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRE--LLESINASGKAYMTHAVL---GGIYAIR 484 (517)
Q Consensus 411 ~~~~l~~~~~~~~v~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~l~~~g~~~~~~~~~---~g~~~lR 484 (517)
|++++. +|+.+++.| ++..+. ... + .....+..... +.+.|.+.|+..+++..+ .+..++|
T Consensus 403 ~g~~~~-~p~gg~~~~~~l~~p~--~~~---~-------~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~R 469 (498)
T 3ihj_A 403 PGIHCN-PLQGAMYAFPRIFIPA--KAV---E-------AAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFR 469 (498)
T ss_dssp TTEECC-CCCBSSEECCEECCCH--HHH---H-------HHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEE
T ss_pred CCcEec-CCCeEEEEEEeccCch--hhh---H-------HHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEE
Confidence 999875 566677666 343220 000 0 00000000112 344455678766554433 3467999
Q ss_pred EEecCCCCcHHHHHHHHHHHHHHHHHHHhhcC
Q 010125 485 FATGATLTEKRHVVVAWTVVQQHLEAFQSAFK 516 (517)
Q Consensus 485 ~~~~~~~t~~~di~~l~~~l~~~~~~l~~~~~ 516 (517)
+++. .+++++++++++|.++.+++.++|+
T Consensus 470 is~~---~~~e~l~~~i~~L~~~~~~~~~~~~ 498 (498)
T 3ihj_A 470 MTIL---PPVEKLKTVLQKVKDFHINFLEKYA 498 (498)
T ss_dssp EECC---SCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred EEeC---CCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9984 4788999999999999998888764
No 107
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=99.90 E-value=2.9e-22 Score=204.39 Aligned_cols=322 Identities=12% Similarity=0.068 Sum_probs=216.2
Q ss_pred HHHHHHHHhccccc-ccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhc
Q 010125 108 GFLGEMLSSGFNIV-GFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIG 186 (517)
Q Consensus 108 ~~~~~~l~~~~n~~-~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g 186 (517)
..+.+.+...+... ...|...++..++++.+.+|+.+.+|.+.+. ....++|+|+|+|+..++.+..+
T Consensus 41 ~~v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~----~~~v~~~~g~~~a~~~~~~~l~~------- 109 (376)
T 2dou_A 41 EAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDP----RREALALIGSQEGLAHLLLALTE------- 109 (376)
T ss_dssp HHHHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCT----TTSEEEESSHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC----CccEEEcCCcHHHHHHHHHHhcC-------
Confidence 44566666665432 3345544578899999999999988986210 01689999999999887766532
Q ss_pred ccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 187 RENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 187 ~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
+++.|++.+++|.++..+++..|+ +++.+|++ +++.+|+++|++++++.+ .+|+++.+++++|.+
T Consensus 110 ----~gd~vl~~~p~y~~~~~~~~~~g~---~~~~~~~~--~~~~~d~~~l~~~l~~~~------~~v~l~~p~nptG~~ 174 (376)
T 2dou_A 110 ----PEDLLLLPEVAYPSYFGAARVASL---RTFLIPLR--EDGLADLKAVPEGVWREA------KVLLLNYPNNPTGAV 174 (376)
T ss_dssp ----TTCEEEEESSCCHHHHHHHHHTTC---EEEEECBC--TTSSBCGGGSCHHHHHHE------EEEEECSSCTTTCCC
T ss_pred ----CCCEEEECCCCcHhHHHHHHHcCC---EEEEeeCC--CCCCCCHHHHHHhhccCc------eEEEECCCCCCcCcc
Confidence 456788888999999999999999 99999982 356799999999997543 377777899999998
Q ss_pred cC---hhHHHHHHHHhCCeEEcccccccccccCcccccccc--CCCCCCeeeeccccccC-CCCcceEEEEeCchhHHhh
Q 010125 267 DP---LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFID--GVEGADSFSLNAHKWFF-ATLDCCCLWVKDPRALVSS 340 (517)
Q Consensus 267 dp---l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~--g~~~aDsi~~~~hK~l~-~p~~~g~l~~~~~~~~~~~ 340 (517)
-| +++|+++|++||+++++|++|+.+.... .....+. +....+.+..++||+++ .+..+|+++.+ ++.. +.
T Consensus 175 ~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~~-~~ 251 (376)
T 2dou_A 175 ADWGYFEEALGLARKHGLWLIHDNPYVDQVYEG-EAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGS-EEAL-AR 251 (376)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSS-CCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEEC-HHHH-HH
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCChhhcCCCCCcEEEEecchhhcCChhheeEEEecC-HHHH-HH
Confidence 66 7889999999999999999998765322 1111111 11245677889999997 44568888764 3322 22
Q ss_pred hcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC
Q 010125 341 LSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNY--GVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFP 418 (517)
Q Consensus 341 ~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~--g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~ 418 (517)
+....... +. ....+...++...+ +.+.++++.++..++++++.+.|++. +++. +
T Consensus 252 l~~~~~~~----------------~~----~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~-~ 308 (376)
T 2dou_A 252 LERVKGVI----------------DF----NQYAGVLRMGVEALKTPKEVVRGYARVYRERALGMAEALKGV--LSLL-P 308 (376)
T ss_dssp HHHHHHHH----------------CC----CSCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTT--SEEC-C
T ss_pred HHHHHHhc----------------cc----CCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHh--cCcc-C
Confidence 21100000 00 00222333333333 35667888888899999999999886 7765 3
Q ss_pred CCee-EEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeEC--CEeEEEEEecCCCCcHH
Q 010125 419 CHFA-VVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLG--GIYAIRFATGATLTEKR 495 (517)
Q Consensus 419 ~~~~-~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--g~~~lR~~~~~~~t~~~ 495 (517)
+..+ ++.+++... . ...++.++|.++|+...++..+. +..++|++++. +++
T Consensus 309 ~~~~~~~~~~~~~~-~----------------------~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris~~~---~~~ 362 (376)
T 2dou_A 309 PRATMYLWGRLPEG-V----------------------DDLEFGLRLVERGVALAPGRGFGPGGKGFVRIALVR---PLE 362 (376)
T ss_dssp CCBSSEEEEECCTT-C----------------------CHHHHHHHHHHTTEECEEGGGGCGGGTTEEEEECCS---CHH
T ss_pred CCeeEEEEEECCCC-C----------------------CHHHHHHHHHHCCEEEcCchhhCCCCCCeEEEEecC---CHH
Confidence 4444 455665421 0 12456777777786554433332 24689999853 678
Q ss_pred HHHHHHHHHHHH
Q 010125 496 HVVVAWTVVQQH 507 (517)
Q Consensus 496 di~~l~~~l~~~ 507 (517)
+++++++.|.++
T Consensus 363 ~i~~~l~~l~~~ 374 (376)
T 2dou_A 363 ELLEAAKRIREA 374 (376)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 108
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.90 E-value=8.4e-23 Score=211.55 Aligned_cols=345 Identities=12% Similarity=0.048 Sum_probs=223.0
Q ss_pred hHHHHHHHHHhccccc--ccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHH
Q 010125 106 IAGFLGEMLSSGFNIV--GFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLN 183 (517)
Q Consensus 106 ~~~~~~~~l~~~~n~~--~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~ 183 (517)
++..+.+.+...+... ...|....+..++++.+.+|+.+.+|.+... ....++|+|||+|+..++.+...
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~----~~~i~~~~g~~~a~~~~~~~~~~---- 113 (422)
T 3fvs_A 42 PPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDP----LRNVLVTVGGYGALFTAFQALVD---- 113 (422)
T ss_dssp CCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCH----HHHEEEESHHHHHHHHHHHHHCC----
T ss_pred CCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCC----CCcEEEECChHHHHHHHHHHHcC----
Confidence 3444555555555432 2456655677899999999999999975320 01689999999999888776532
Q ss_pred HhcccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCC----C------CCcccCHHHHHHHHHHhHhcCCcceE
Q 010125 184 KIGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTK----S------SSYGLSPDSLMAQINSDVEVGLIPLF 253 (517)
Q Consensus 184 ~~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~----~------~~~~~d~~~Le~~i~~~~~~g~~p~~ 253 (517)
++..|++..++|.++..+++..|. +++.+|+++ + .++.+|+++|++++++++ .+
T Consensus 114 -------~gd~vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~~~------~~ 177 (422)
T 3fvs_A 114 -------EGDEVIIIEPFFDCYEPMTMMAGG---RPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRT------KA 177 (422)
T ss_dssp -------TTCEEEEEESCCTTHHHHHHHTTC---EEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCTTE------EE
T ss_pred -------CCCEEEEcCCCchhhHHHHHHcCC---EEEEEecccccccccccccccCCCCCHHHHHhhcCCCc------eE
Confidence 556688888999999999999999 999999875 1 256899999999987543 37
Q ss_pred EEeeccCCcccccc---ChhHHHHHHHHhCCeEEcccccccccccCccccccc--cCCCCCCeeeeccccccC-CCCcce
Q 010125 254 LCATIGTTAITAVD---PLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFI--DGVEGADSFSLNAHKWFF-ATLDCC 327 (517)
Q Consensus 254 vv~t~gtt~~G~id---pl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~--~g~~~aDsi~~~~hK~l~-~p~~~g 327 (517)
|+++.++|++|.+- ++++|+++|++||+++++|++|+.+........... ......+.+..++||+++ ....+|
T Consensus 178 v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G 257 (422)
T 3fvs_A 178 LVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVG 257 (422)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCE
T ss_pred EEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCccceEE
Confidence 78889999999997 599999999999999999999987654322111111 111134467788999997 447789
Q ss_pred EEEEeCchhHHhhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHh---------cHHHHHHHHHHHHH
Q 010125 328 CLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNY---------GVANLRHFLRSHVN 398 (517)
Q Consensus 328 ~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~---------g~~g~~~~i~~~~~ 398 (517)
+++.+++ .. +.+....... .+ ....+..+++...+ ..+.++++.++..+
T Consensus 258 ~~~~~~~-~~-~~~~~~~~~~--------------~~------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 315 (422)
T 3fvs_A 258 WVLGPDH-IM-KHLRTVHQNS--------------VF------HCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQR 315 (422)
T ss_dssp EEECCHH-HH-HHHHHHHHTT--------------TC------CCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHH
T ss_pred EEEeCHH-HH-HHHHHHHhhc--------------cC------CCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHH
Confidence 8877543 22 2221000000 00 01222233333222 24567888889999
Q ss_pred HHHHHHHHHhcCCCeEEecCCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHH-hcCcEEEeeeeE
Q 010125 399 MAKLFERLVSGDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESIN-ASGKAYMTHAVL 477 (517)
Q Consensus 399 ~a~~l~~~l~~~~~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~ 477 (517)
+++++.+.|++. +++++.+....++.+.+..... .......... .....++.+.+. +.|+.+.++..+
T Consensus 316 ~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~--~~~~~~~~~~ll~~~gv~v~~g~~f 384 (422)
T 3fvs_A 316 CRDHMIRSLQSV-GLKPIIPQGSYFLITDISDFKR--------KMPDLPGAVD--EPYDRRFVKWMIKNKGLVAIPVSIF 384 (422)
T ss_dssp HHHHHHHHHHTT-TCEEEBCSBSSEEEEECHHHHH--------HCCCCCCCTT--CCHHHHHHHHHHHHHCEECEEGGGG
T ss_pred HHHHHHHHHHHc-CCeecCCCeeeEEEEechhhcc--------cccccccccc--cccHHHHHHHHHHhcCEEEeCcHHh
Confidence 999999999988 8887755444445555432100 0000000000 000234455443 457655544433
Q ss_pred -------CCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 010125 478 -------GGIYAIRFATGATLTEKRHVVVAWTVVQQHLEA 510 (517)
Q Consensus 478 -------~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~ 510 (517)
.+..++|++++. ++++|++++++|+++.++
T Consensus 385 ~~~~~~~~~~~~iRis~~~---~~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 385 YSVPHQKHFDHYIRFCFVK---DEATLQAMDEKLRKWKVE 421 (422)
T ss_dssp SCHHHHTTSCSEEEEECCC---CHHHHHHHHHHHHHHHHC
T ss_pred cCCcCCCCCCCeEEEEecC---CHHHHHHHHHHHHHHHhh
Confidence 246799999853 888999999999887653
No 109
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.90 E-value=2.2e-22 Score=220.15 Aligned_cols=325 Identities=11% Similarity=0.012 Sum_probs=206.7
Q ss_pred HHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHH-HHHcCC
Q 010125 136 NIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKA-AQIVGI 214 (517)
Q Consensus 136 ~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~ka-a~~~G~ 214 (517)
.++.+.+++++|.+. ..++++|+|+||..++.+... +++.|+++..+|.|+..+ ++..|+
T Consensus 176 ~e~e~~lA~~~gae~--------~i~v~nGtt~an~~ai~al~~-----------pGD~VLv~~~~H~S~~~~~~~l~Ga 236 (730)
T 1c4k_A 176 VAAEKHAARVYNADK--------TYFVLGGSSNANNTVTSALVS-----------NGDLVLFDRNNHKSVYNSALAMAGG 236 (730)
T ss_dssp HHHHHHHHHHTTCSE--------EEEESSHHHHHHHHHHHHHCC-----------TTCEEEEETTCCHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHCCCc--------EEEECCHHHHHHHHHHHHhcC-----------CCCEEEEcCCchHHHHHHHHHHCCC
Confidence 355678889999874 357777778999888776532 567899999999999998 788888
Q ss_pred CCCCEEEEecCCCC---CcccCHHHH-----HHHHHHh-Hhc--CCcc-eEEEeeccCCccccccChhHHHHHHHHhCCe
Q 010125 215 DVKNFRAIKTTKSS---SYGLSPDSL-----MAQINSD-VEV--GLIP-LFLCATIGTTAITAVDPLKPLCDVAKQFGIW 282 (517)
Q Consensus 215 g~~~v~~vp~d~~~---~~~~d~~~L-----e~~i~~~-~~~--g~~p-~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~ 282 (517)
+++.++.+.++ .+.+|+++| +++|++. .+. ...| .+|+++.++ ++|.+.|+++|+++|++||++
T Consensus 237 ---~~v~v~~~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~pn-~~G~v~dl~~I~~la~~~g~~ 312 (730)
T 1c4k_A 237 ---RPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGT-YDGTIYNAHEVVKRIGHLCDY 312 (730)
T ss_dssp ---EEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBC-TTSEEECHHHHHHHHGGGBSE
T ss_pred ---EEEEEeCCccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECCC-CCCeecCHHHHHHHHHHcCCe
Confidence 88888765321 145888888 8877653 110 1123 477777774 799999999999999999999
Q ss_pred EEcccccccccccCccccc--cccC-CCCCC----eeeeccccccCCCCcceEEEEeCchhHHhhhcCCccccCCccccc
Q 010125 283 VHVDAAYAGSACICPEFRH--FIDG-VEGAD----SFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATES 355 (517)
Q Consensus 283 lhvDaA~g~~~~~~~~~~~--~~~g-~~~aD----si~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~ 355 (517)
+|||+||+++..+.+..+. .+.. ..++| +++.++||++++|.++|++++++.... ....++.....
T Consensus 313 livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~-----g~~~~i~~~~~-- 385 (730)
T 1c4k_A 313 IEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIK-----GQLRYCDHKHF-- 385 (730)
T ss_dssp EEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGT-----TSTTCCCHHHH--
T ss_pred EEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhhc-----CcccccCHHHH--
Confidence 9999999876544443321 1110 11577 899999999999888999999887421 11111110000
Q ss_pred cccccCCCccccCCCCC-C-chHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEecCCC------------
Q 010125 356 MQVVDYKDWQITLSRRF-R-SLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSG-DKRFEIVFPCH------------ 420 (517)
Q Consensus 356 ~~~~~~~~~~~~~sr~~-~-al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~-~~~~~l~~~~~------------ 420 (517)
.... ...+.+... . ..++-++++.+..++..+++++..++++++++.|++ +++++++.+..
T Consensus 386 ---~~~~-~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~ 461 (730)
T 1c4k_A 386 ---NNSF-NLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTE 461 (730)
T ss_dssp ---HHHH-HHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHH
T ss_pred ---HHHH-HHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccc
Confidence 0000 011111111 1 123334455454434467789999999999999988 78999864321
Q ss_pred ------------------------e---eE----EEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCc
Q 010125 421 ------------------------F---AV----VCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGK 469 (517)
Q Consensus 421 ------------------------~---~~----v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 469 (517)
. .+ ++|...+... ........+.....+.+.|.++|+
T Consensus 462 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~------------~~g~~~~~g~~~~~l~~~L~e~GI 529 (730)
T 1c4k_A 462 DMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINP------------ETGDYEDFGVPATIVANYLRDHGI 529 (730)
T ss_dssp HHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEET------------TTTEECSSCCCHHHHHHHHHHTTC
T ss_pred cccccchhhccCccchhccccccCCcccccCCeEEEEEeCCccc------------ccccccccCCCHHHHHHHHHHCCc
Confidence 0 01 4444421000 000000000113456677777776
Q ss_pred EEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 010125 470 AYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHLEAF 511 (517)
Q Consensus 470 ~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l 511 (517)
. +... +...+|+++ ++.++++++++++++|+++.+++
T Consensus 530 ~-v~~~---~~~~ir~~~-s~g~t~e~i~~Ll~aL~~i~~~~ 566 (730)
T 1c4k_A 530 I-PEKS---DLNSILFLM-TPAETPAKMNNLITQLLQLQRLI 566 (730)
T ss_dssp C-CSEE---CSSEEEEEC-CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred E-EEEC---CCCeEEEEe-CCCCCHHHHHHHHHHHHHHHHhc
Confidence 3 3322 345789987 57889999999999999987765
No 110
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=6.1e-23 Score=214.61 Aligned_cols=344 Identities=11% Similarity=0.038 Sum_probs=223.7
Q ss_pred hHHHHHHHHHhcccc-cccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHH
Q 010125 106 IAGFLGEMLSSGFNI-VGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNK 184 (517)
Q Consensus 106 ~~~~~~~~l~~~~n~-~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~ 184 (517)
.|..+.+.+...+.. ....|....+..++++++.+|+.+.+|.+.+. ..+++|+||++|+..++.+..+
T Consensus 71 ~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~-----~~v~~t~G~~~al~~~~~~l~~----- 140 (447)
T 3b46_A 71 PPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKA-----ENVTVTTGANEGILSCLMGLLN----- 140 (447)
T ss_dssp CCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCG-----GGEEEESHHHHHHHHHHHHHCC-----
T ss_pred CCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCh-----hhEEEeCCHHHHHHHHHHHHcC-----
Confidence 345666777766654 33466666677899999999999988864321 2689999999999888876632
Q ss_pred hcccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCC----------CcccCHHHHHHHHHHhHhcCCcceEE
Q 010125 185 IGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSS----------SYGLSPDSLMAQINSDVEVGLIPLFL 254 (517)
Q Consensus 185 ~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~----------~~~~d~~~Le~~i~~~~~~g~~p~~v 254 (517)
+++.|++.+++|.++..+++..|. +++.+|+++++ ++.+|+++|+++|+++ +.+|
T Consensus 141 ------~gd~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~------~~~v 205 (447)
T 3b46_A 141 ------AGDEVIVFEPFFDQYIPNIELCGG---KVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSK------TKAV 205 (447)
T ss_dssp ------TTCEEEEEESCCTTHHHHHHHTTC---EEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCTT------EEEE
T ss_pred ------CCCEEEEeCCCchhHHHHHHHcCC---EEEEEeCCCccccccccccccCcccCHHHHHHhhccC------CeEE
Confidence 456788888999999999999999 99999987532 4689999999988643 3477
Q ss_pred EeeccCCccccc---cChhHHHHHHHHhCCeEEcccccccccccCcccccc--c-cCCCCCCeeeeccccccC-CCCcce
Q 010125 255 CATIGTTAITAV---DPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHF--I-DGVEGADSFSLNAHKWFF-ATLDCC 327 (517)
Q Consensus 255 v~t~gtt~~G~i---dpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~--~-~g~~~aDsi~~~~hK~l~-~p~~~g 327 (517)
+++.++|++|.+ +++++|+++|++||+++++|++|+.+.+.. ..... + .+....|.+..++||+++ ..+.+|
T Consensus 206 ~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~riG 284 (447)
T 3b46_A 206 IINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTD-SFTRIATLSPEIGQLTLTVGSAGKSFAATGWRIG 284 (447)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-CCCCGGGSCHHHHTTEEEEEEHHHHTTCTTSCCE
T ss_pred EEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCC-CCcCHHHcCCCCCCcEEEEecCchhcCCcchhhE
Confidence 788999999998 569999999999999999999998755422 11111 1 112357889999999997 446689
Q ss_pred EEEEeCchhHHhhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHH
Q 010125 328 CLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYG-VANLRHFLRSHVNMAKLFERL 406 (517)
Q Consensus 328 ~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g-~~g~~~~i~~~~~~a~~l~~~ 406 (517)
+++++++.... .+.....+.. ++ .-......+..+++... .+.++++.++..++++++.+.
T Consensus 285 ~~~~~~~~l~~-~l~~~~~~~~--------------~~---~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~ 346 (447)
T 3b46_A 285 WVLSLNAELLS-YAAKAHTRIC--------------FA---SPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSI 346 (447)
T ss_dssp EEECSCHHHHH-HHHHHHHHHT--------------SS---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCHHHHH-HHHHHHhhcc--------------CC---CChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 99884444332 2211000000 00 00011122233343221 345777888889999999999
Q ss_pred HhcCCCeEEecCCCeeEEEEEecCCCcchhhhhhhhhcccc-chHHHHHHHHHHHHHHHH-hcCcEEEeeeeEC------
Q 010125 407 VSGDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLL-SEEEQINEFNRELLESIN-ASGKAYMTHAVLG------ 478 (517)
Q Consensus 407 l~~~~~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~------ 478 (517)
|++. ++++..+....++++.+..... +.... ...........++.++|. +.|+++.++..+.
T Consensus 347 L~~~-g~~~~~~~~g~~~~~~~~~~~~---------p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~ 416 (447)
T 3b46_A 347 FDEL-GLPYTAPEGTYFVLVDFSKVKI---------PEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEK 416 (447)
T ss_dssp HHHH-TCCEECCSBSSEEEEECTTCCC---------CTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGG
T ss_pred HHHC-CCeecCCCeeEEEEEecccccC---------ccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccC
Confidence 9887 7777643334455555542100 00000 000000001245666665 4676554443331
Q ss_pred -CEeEEEEEecCCCCcHHHHHHHHHHHHH
Q 010125 479 -GIYAIRFATGATLTEKRHVVVAWTVVQQ 506 (517)
Q Consensus 479 -g~~~lR~~~~~~~t~~~di~~l~~~l~~ 506 (517)
+..++|+++.. ++++|++++++|.+
T Consensus 417 ~~~~~iRls~~~---~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 417 AAENLLRFAVCK---DDAYLENAVERLKL 442 (447)
T ss_dssp GGTTEEEEECCS---CHHHHHHHHHHGGG
T ss_pred CCCCEEEEEEeC---CHHHHHHHHHHHHH
Confidence 24689999853 67899999988876
No 111
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.90 E-value=7.5e-23 Score=211.06 Aligned_cols=326 Identities=9% Similarity=-0.012 Sum_probs=218.4
Q ss_pred HHHHHHHHhccccc-ccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhc
Q 010125 108 GFLGEMLSSGFNIV-GFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIG 186 (517)
Q Consensus 108 ~~~~~~l~~~~n~~-~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g 186 (517)
..+.+.+...+... ...|...++..++++.+.+|+.+.+|.+.+. ....++|+|+|+|+..++.+..+
T Consensus 63 ~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~----~~~v~~t~G~~~al~~~~~~l~~------- 131 (404)
T 2o1b_A 63 QGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDK----EDEVCILYGTKNGLVAVPTCVIN------- 131 (404)
T ss_dssp HHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCT----TTSEEEESSHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC----cccEEEcCCcHHHHHHHHHHhcC-------
Confidence 34556666655432 3345555578899999999999999976210 01689999999999888776532
Q ss_pred ccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 187 RENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 187 ~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
+++.|++..++|.++..+++..|. +++.+|+++ +++.+|+++|+++++.++ .+|+++.+++++|.+
T Consensus 132 ----~gd~Vl~~~p~y~~~~~~~~~~g~---~~~~v~~~~-~~~~~d~~~l~~~l~~~~------~~v~l~~p~nptG~~ 197 (404)
T 2o1b_A 132 ----PGDYVLLPDPGYTDYLAGVLLADG---KPVPLNLEP-PHYLPDWSKVDSQIIDKT------KLIYLTYPNNPTGST 197 (404)
T ss_dssp ----TTCEEEEEESCCSSHHHHHHHTTC---EEEEEECCT-TTCCCCGGGSCHHHHHHE------EEEEECSSCTTTCCC
T ss_pred ----CCCEEEEcCCCchhHHHHHHHCCC---EEEEeccCc-ccCcCCHHHHHHhhccCc------eEEEEcCCCCCCCcc
Confidence 456688888999999999999999 999999875 346789999999997543 367778899999998
Q ss_pred cC---hhHHHHHHHHhCCeEEcccccccccccCcccccccc--CCCCCCeeeeccccccCC-CCcceEEEEeCchhHHhh
Q 010125 267 DP---LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFID--GVEGADSFSLNAHKWFFA-TLDCCCLWVKDPRALVSS 340 (517)
Q Consensus 267 dp---l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~--g~~~aDsi~~~~hK~l~~-p~~~g~l~~~~~~~~~~~ 340 (517)
-| +++|+++|++||+++++|++|+.+.... ....... +....+.++.++||+++. ...+|+++.+ ++.. +.
T Consensus 198 ~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~-~~ 274 (404)
T 2o1b_A 198 ATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDA-KNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVGN-KDMI-QA 274 (404)
T ss_dssp CCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSS-CCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEEC-HHHH-HH
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCChhhcCCCCCCEEEEEecchhccCchhheEeEecC-HHHH-HH
Confidence 65 7899999999999999999998765321 1111111 111356788899999974 4568988764 3322 22
Q ss_pred hcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC
Q 010125 341 LSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNY--GVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFP 418 (517)
Q Consensus 341 ~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~--g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~ 418 (517)
+.....+. + . ....+..+++...+ +.+.++++.++..++++++.+.|++. ++++. +
T Consensus 275 l~~~~~~~----------------~--~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~ 332 (404)
T 2o1b_A 275 LKKYQTHT----------------N--A--GMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAKA-DLPFV-H 332 (404)
T ss_dssp HHHHHHHH----------------C--C--CCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEE-C
T ss_pred HHHHHhhc----------------c--C--CCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc-CCeec-C
Confidence 21100000 0 0 01223333333333 35667888888889999999999887 78776 4
Q ss_pred CCeeE-EEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHH-hcCcEEEeeeeEC--CEeEEEEEecCCCCcH
Q 010125 419 CHFAV-VCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESIN-ASGKAYMTHAVLG--GIYAIRFATGATLTEK 494 (517)
Q Consensus 419 ~~~~~-v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--g~~~lR~~~~~~~t~~ 494 (517)
+..++ +.+++... . ...++.++|. +.|+...++..+. +..++|+++.. ++
T Consensus 333 ~~~g~~~~~~~~~~-~----------------------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~---~~ 386 (404)
T 2o1b_A 333 AKGGIYVWLETPPG-Y----------------------DSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL---DD 386 (404)
T ss_dssp CCBSSEEEEECCTT-C----------------------CHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS---CT
T ss_pred CCcceEEEEeCCCC-C----------------------CHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC---CH
Confidence 44454 55555321 0 0235566655 4686554433332 24689999863 56
Q ss_pred HHHHHHHHHHHHHHH
Q 010125 495 RHVVVAWTVVQQHLE 509 (517)
Q Consensus 495 ~di~~l~~~l~~~~~ 509 (517)
++++++++.|.++.+
T Consensus 387 e~l~~~l~~l~~~l~ 401 (404)
T 2o1b_A 387 QKLDEAAIRLTELAY 401 (404)
T ss_dssp THHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHH
Confidence 699999988877653
No 112
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=99.90 E-value=1.3e-21 Score=198.17 Aligned_cols=285 Identities=11% Similarity=0.049 Sum_probs=199.9
Q ss_pred HHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHHcCCCC
Q 010125 137 IVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQIVGIDV 216 (517)
Q Consensus 137 ~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~ 216 (517)
++++++++++|.+++ ..++|+|||+|+..++.++ +.|+++.++|.++..+++..|+
T Consensus 65 ~l~~~la~~~~~~~~-------~i~~~~g~t~al~~~~~~~---------------d~vi~~~~~~~~~~~~~~~~g~-- 120 (361)
T 3ftb_A 65 RLNKSIENYLKLKDI-------GIVLGNGASEIIELSISLF---------------EKILIIVPSYAEYEINAKKHGV-- 120 (361)
T ss_dssp HHHHHHHHHHTCCSC-------EEEEESSHHHHHHHHHTTC---------------SEEEEEESCCTHHHHHHHHTTC--
T ss_pred HHHHHHHHHhCCCcc-------eEEEcCCHHHHHHHHHHHc---------------CcEEEecCChHHHHHHHHHcCC--
Confidence 344556666677654 6899999999998777554 2477888999999999999999
Q ss_pred CCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccC---hhHHHHHHHHhCCeEEccccccccc
Q 010125 217 KNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSA 293 (517)
Q Consensus 217 ~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idp---l~eI~~i~~~~gi~lhvDaA~g~~~ 293 (517)
+++.+|++++ +.+++++|++++++ + .+|+++.++|++|.+-| +++|+++|++||+++|+|++|+.+.
T Consensus 121 -~~~~~~~~~~--~~~~~~~l~~~l~~-~------~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~ 190 (361)
T 3ftb_A 121 -SVVFSYLDEN--MCIDYEDIISKIDD-V------DSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFT 190 (361)
T ss_dssp -EEEEEECCTT--SCCCHHHHHHHTTT-C------SEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGT
T ss_pred -eEEEeecCcc--cCCCHHHHHHhccC-C------CEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhc
Confidence 9999999863 47888999999876 3 37888899999999865 6778888889999999999998765
Q ss_pred ccCcccccccc--CCCCCCeeeeccccccC-CCCcceEEEEeCchhHHhhhcCCccccCCccccccccccCCCccccCCC
Q 010125 294 CICPEFRHFID--GVEGADSFSLNAHKWFF-ATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSR 370 (517)
Q Consensus 294 ~~~~~~~~~~~--g~~~aDsi~~~~hK~l~-~p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr 370 (517)
.. . ...... +......++.++||+++ .+.++|++++.++.... .+...... +
T Consensus 191 ~~-~-~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~-~~~~~~~~----------------~------ 245 (361)
T 3ftb_A 191 GD-P-SSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAA-KIKAKQNP----------------W------ 245 (361)
T ss_dssp CC-T-TSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCHHHHH-HHHTTSCT----------------T------
T ss_pred CC-c-ccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCHHHHH-HHHhhCCC----------------C------
Confidence 43 1 111111 11123366778999997 55678888766665432 22111000 0
Q ss_pred CCCchHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHHhcCCCeE-EecCCCeeEEEEEecCCCcchhhhhhhhhccccc
Q 010125 371 RFRSLKLWFVIRNY-GVANLRHFLRSHVNMAKLFERLVSGDKRFE-IVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLS 448 (517)
Q Consensus 371 ~~~al~~~~~l~~~-g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~-l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~ 448 (517)
....+..+++...+ ..+.++++.++..++++++.+.|+++|+++ +. ++..+++.+++....
T Consensus 246 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~---------------- 308 (361)
T 3ftb_A 246 NINCFAEMAAINCLKDTNYIEESLLWIKKERKRFIEELNKIGFIKRVF-SPHANFVLCRLENIS---------------- 308 (361)
T ss_dssp CSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEE-CCSSSEEEEEESSSC----------------
T ss_pred CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCCceec-CCCCeEEEEEcCCCC----------------
Confidence 11233444444444 246678888899999999999999999998 65 566677777775421
Q ss_pred hHHHHHHHHHHHHHHHHhcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 010125 449 EEEQINEFNRELLESINASGKAYMTHAVLG--GIYAIRFATGATLTEKRHVVVAWTVVQQHLE 509 (517)
Q Consensus 449 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~ 509 (517)
..++.+.|.++|+...++..+. +..++|++++ +.++++++++.|+++.+
T Consensus 309 --------~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~----~~~~~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 309 --------GEKLYDSLLKEDIVIRRCCNFIGLDDSFVRFAIK----DEKKNTKFLRALKGVEN 359 (361)
T ss_dssp --------HHHHHHHHHTTTEECEECTTSTTCCTTEEEEECC----CHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHCCeEEeeCccCCCCCCCEEEEEcC----CHHHHHHHHHHHHHHHh
Confidence 2467777878886544433332 2568999984 66789999988887765
No 113
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=99.90 E-value=5e-22 Score=203.07 Aligned_cols=291 Identities=13% Similarity=0.048 Sum_probs=196.5
Q ss_pred HHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHHc
Q 010125 133 ELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQIV 212 (517)
Q Consensus 133 ~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~~ 212 (517)
....++++.+++++|.+ ..+++++||+|+..++.+..+ +++.|+++...|.++..+++..
T Consensus 84 ~~~~~l~~~la~~~g~~---------~~i~~~sGt~a~~~~~~~~~~-----------~gd~v~~~~~~~~~~~~~~~~~ 143 (384)
T 1bs0_A 84 VVHQALEEELAEWLGYS---------RALLFISGFAANQAVIAAMMA-----------KEDRIAADRLSHASLLEAASLS 143 (384)
T ss_dssp HHHHHHHHHHHHHHTCS---------EEEEESCHHHHHHHHHHHHCC-----------TTCEEEEETTCCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhCCC---------cEEEeCCcHHHHHHHHHHhCC-----------CCcEEEEcccccHHHHHHHHHc
Confidence 34445566677777875 246666679999887765421 5567888999999999999999
Q ss_pred CCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEcccccccc
Q 010125 213 GIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGS 292 (517)
Q Consensus 213 G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~ 292 (517)
|. +++.+|. +|+++|++++++... .+.+|+++.+++++|.+.|+++|.++|++||+++|+|++|+.+
T Consensus 144 g~---~~~~~~~-------~d~~~l~~~l~~~~~---~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~ 210 (384)
T 1bs0_A 144 PS---QLRRFAH-------NDVTHLARLLASPCP---GQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTG 210 (384)
T ss_dssp SS---EEEEECT-------TCHHHHHHHHHSCCS---SCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred CC---CEEEeCC-------CCHHHHHHHHHhcCC---CCeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccc
Confidence 98 8888873 479999999875421 1357888889999999999999999999999999999999765
Q ss_pred cccC--ccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcC-CccccCCccccccccccCCCccccCC
Q 010125 293 ACIC--PEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLST-NPEYLKNKATESMQVVDYKDWQITLS 369 (517)
Q Consensus 293 ~~~~--~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~-~~~yl~~~~~~~~~~~~~~~~~~~~s 369 (517)
.+.- ......+ + ...|+++.++||+++ |.| |+++++ ++.. +.+.. ...|.. +
T Consensus 211 ~~~~~~~~~~~~~-~-~~~di~~~s~sK~~~-~~G-G~~~~~-~~~~-~~l~~~~~~~~~-------------------~ 265 (384)
T 1bs0_A 211 VIGEQGRGSCWLQ-K-VKPELLVVTFGKGFG-VSG-AAVLCS-STVA-DYLLQFARHLIY-------------------S 265 (384)
T ss_dssp TSSGGGCCHHHHT-T-CCCSEEEEESSSTTS-SCC-EEEEEC-HHHH-HHHHHHCHHHHS-------------------S
T ss_pred eecCCCCchHHhc-C-CCCcEEEeeccchhh-ccC-cEEEeC-HHHH-HHHHHhchhhhc-------------------C
Confidence 4310 0011111 1 257899999999998 545 888775 3332 22211 111111 0
Q ss_pred CCCCch---HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCeeEEEEEecCCCcchhhhhhhhhccc
Q 010125 370 RRFRSL---KLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCL 446 (517)
Q Consensus 370 r~~~al---~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~ 446 (517)
.....+ .+..+++.+.....+++.++..++++++.+.|++. ++++. ++..+++++.+..
T Consensus 266 ~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~---------------- 327 (384)
T 1bs0_A 266 TSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL-PFTLA-DSCSAIQPLIVGD---------------- 327 (384)
T ss_dssp BCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS-SCEEC-SCCSSBCCEEEES----------------
T ss_pred CCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc-CCccc-CCCCCEEEEEeCC----------------
Confidence 011222 23334444321155678888999999999999987 78875 3555666666632
Q ss_pred cchHHHHHHHHHHHHHHHHhcCcEEEeeeeE---CCEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 010125 447 LSEEEQINEFNRELLESINASGKAYMTHAVL---GGIYAIRFATGATLTEKRHVVVAWTVVQQH 507 (517)
Q Consensus 447 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~---~g~~~lR~~~~~~~t~~~di~~l~~~l~~~ 507 (517)
.....++.+.|.++|+.......+ .+..++|+++. ..++++++++++++|+++
T Consensus 328 -------~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~-~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 328 -------NSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLT-AAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp -------HHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCC-TTCCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEEc-CCCCHHHHHHHHHHHHhh
Confidence 122456777787787654332211 23578999984 566888999999999875
No 114
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.89 E-value=9.6e-22 Score=203.34 Aligned_cols=300 Identities=10% Similarity=0.092 Sum_probs=194.6
Q ss_pred HHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHH---
Q 010125 134 LENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQ--- 210 (517)
Q Consensus 134 lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~--- 210 (517)
...++.+++++++|.+ .+++++|||+|+..++.++.. +++.|+++...|.++.....
T Consensus 57 ~~~~l~~~la~~~g~~---------~~~~~~~gt~a~~~al~~l~~-----------~gd~vi~~~~~~~~~~~~~~~~~ 116 (412)
T 2cb1_A 57 TAKALEERLKALEGAL---------EAVVLASGQAATFAALLALLR-----------PGDEVVAAKGLFGQTIGLFGQVL 116 (412)
T ss_dssp HHHHHHHHHHHHHTCS---------EEEEESSHHHHHHHHHHTTCC-----------TTCEEEEETTCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCC---------cEEEECCHHHHHHHHHHHHhC-----------CCCEEEEeCCCchhHHHHHHHHH
Confidence 3445567778888764 478999999999988876521 45678888899998777643
Q ss_pred -HcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEccccc
Q 010125 211 -IVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAY 289 (517)
Q Consensus 211 -~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~ 289 (517)
..|+ +++.+|. |+++|+++|++++ .+|+++.+++++|.+.|+++|+++|++||+++|+|++|
T Consensus 117 ~~~g~---~~~~~~~--------~~~~l~~~i~~~~------~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~ 179 (412)
T 2cb1_A 117 SLMGV---TVRYVDP--------EPEAVREALSAKT------RAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTF 179 (412)
T ss_dssp TTTTC---EEEEECS--------SHHHHHHHCCTTE------EEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGG
T ss_pred HHcCC---EEEEECC--------CHHHHHHHhccCC------eEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCC
Confidence 3576 8888875 3889999887643 47888999999999999999999999999999999999
Q ss_pred ccccccCccccccccCCCCCCeeeeccccccCCCCc-ceEEEEeCchh-HHhhhcCCccccCCcc----cccccc-ccCC
Q 010125 290 AGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLD-CCCLWVKDPRA-LVSSLSTNPEYLKNKA----TESMQV-VDYK 362 (517)
Q Consensus 290 g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~-~g~l~~~~~~~-~~~~~~~~~~yl~~~~----~~~~~~-~~~~ 362 (517)
+.+........ .++|+++.++||+++.|.+ .|.+++.++.. ..+.....++...... ...... ....
T Consensus 180 ~~~~~~~~~~~------~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r 253 (412)
T 2cb1_A 180 GAAGALCRPLA------WGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVR 253 (412)
T ss_dssp GTTTTSCCGGG------GTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHH
T ss_pred ccccccCCccc------cCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHH
Confidence 87722111111 2689999999999988866 77777765321 1000000011100000 000000 0000
Q ss_pred Ccc-ccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-----------------CeeEE
Q 010125 363 DWQ-ITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPC-----------------HFAVV 424 (517)
Q Consensus 363 ~~~-~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~-----------------~~~~v 424 (517)
.+. -..+....+...|+.+. +.+.+.+++++..++++++.+.|.+.++++++..| ..+++
T Consensus 254 ~~~~~~~g~~~~~~~a~~~~~--~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv 331 (412)
T 2cb1_A 254 TLGLSLCGMALSPFNAYLLFQ--GLETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPIL 331 (412)
T ss_dssp HHHTTTTCCCCCHHHHHHHHH--HGGGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEE
T ss_pred HHHHHhcCCCCChHHhHHHHc--CCchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEE
Confidence 001 00112334555566554 34566778888889999999999999998755222 35688
Q ss_pred EEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeee--------eE----------------CC-
Q 010125 425 CFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHA--------VL----------------GG- 479 (517)
Q Consensus 425 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~--------~~----------------~g- 479 (517)
+|.+ +. ...+.+.+.+.|... ... .. .|
T Consensus 332 ~~~~-~~-------------------------~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~ 384 (412)
T 2cb1_A 332 TLDL-GD-------------------------LERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGV 384 (412)
T ss_dssp EEEC-SS-------------------------HHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTC
T ss_pred EEEe-CC-------------------------HHHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCC
Confidence 9988 43 123344444556544 321 00 01
Q ss_pred -EeEEEEEecCCCCcHHHHHHHHHHHHH
Q 010125 480 -IYAIRFATGATLTEKRHVVVAWTVVQQ 506 (517)
Q Consensus 480 -~~~lR~~~~~~~t~~~di~~l~~~l~~ 506 (517)
...+|+|++ ..+++++|+.+.++|++
T Consensus 385 ~~~~iR~s~g-~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 385 TPGLVRVSVG-LEDPLDLLALFEEALEA 411 (412)
T ss_dssp CTTEEEEECC-SSCHHHHHHHHHHHHHC
T ss_pred CCCeEEEEec-cCCHHHHHHHHHHHHhh
Confidence 468999984 67788899999988864
No 115
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.89 E-value=1.4e-22 Score=208.63 Aligned_cols=325 Identities=15% Similarity=0.094 Sum_probs=208.7
Q ss_pred HHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcc
Q 010125 108 GFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGR 187 (517)
Q Consensus 108 ~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~ 187 (517)
..+.+.+...+... .|..++...++++ .+++++|.+ ..+++++||+|+..++.+++-
T Consensus 44 ~~v~~a~~~~~~~~--~y~~~~~~~~l~~----~la~~~~~~---------~~v~~~~Gt~a~~~~l~~~~~-------- 100 (399)
T 2oga_A 44 AETDAAIARVLDSG--RYLLGPELEGFEA----EFAAYCETD---------HAVGVNSGMDALQLALRGLGI-------- 100 (399)
T ss_dssp HHHHHHHHHHHHHT--CCSSSHHHHHHHH----HHHHHTTSS---------EEEEESCHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHhcC--CCCCchhHHHHHH----HHHHHHCCC---------eEEEecCHHHHHHHHHHHhCC--------
Confidence 34445555544332 3444555555555 455666654 368888999999888766521
Q ss_pred cCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcccccc
Q 010125 188 ENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVD 267 (517)
Q Consensus 188 ~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~id 267 (517)
.++..|+++..+|.++..+++..|+ +++.+|++++ ++.+|+++|+++|++++ .+|+ .++++|.+.
T Consensus 101 --~~gd~vl~~~~~~~~~~~~~~~~g~---~~~~~~~~~~-~~~~d~~~l~~~i~~~~------~~v~---~~n~tG~~~ 165 (399)
T 2oga_A 101 --GPGDEVIVPSHTYIASWLAVSATGA---TPVPVEPHED-HPTLDPLLVEKAITPRT------RALL---PVHLYGHPA 165 (399)
T ss_dssp --CTTCEEEEESSSCTHHHHHHHHTTC---EEEEECBCSS-SSSBCHHHHHHHCCTTE------EEEC---CBCGGGCCC
T ss_pred --CCcCEEEECCCccHHHHHHHHHCCC---EEEEEecCCC-CCCcCHHHHHHhcCCCC------eEEE---EeCCcCCcc
Confidence 1456788888999999999999999 9999998753 57899999999987533 2444 357899999
Q ss_pred ChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccc--cccCCCCcceEEEEeCchhHHhhhcCCc
Q 010125 268 PLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAH--KWFFATLDCCCLWVKDPRALVSSLSTNP 345 (517)
Q Consensus 268 pl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~h--K~l~~p~~~g~l~~~~~~~~~~~~~~~~ 345 (517)
|+++|.++|++||+++|+|++|+.+.... ... +. ...|.+++++| |+++.|-.+|+++++++..... +....
T Consensus 166 ~l~~i~~l~~~~~~~li~Dea~~~g~~~~--~~~-~~--~~~di~~~S~~~sK~~~~~G~~g~~~~~~~~~~~~-l~~~~ 239 (399)
T 2oga_A 166 DMDALRELADRHGLHIVEDAAQAHGARYR--GRR-IG--AGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAER-LRMLR 239 (399)
T ss_dssp CHHHHHHHHHHHTCEECEECTTCTTCEET--TEE-TT--CTTCEEEEECCTTSSSCCSSCCEEEEESCHHHHHH-HHHHH
T ss_pred CHHHHHHHHHHcCCEEEEECcccccCccC--Cee-cc--cccCEEEEeCCCCccCCcCCceEEEEeCCHHHHHH-HHHHH
Confidence 99999999999999999999997654321 111 11 12588999985 9998644567777765544321 11000
Q ss_pred cccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCC-eeEE
Q 010125 346 EYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCH-FAVV 424 (517)
Q Consensus 346 ~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~-~~~v 424 (517)
.+ ... ..+.........+...+..++++..+ +.++++.++..++++++.+.|+++|++++...+. .+.+
T Consensus 240 ~~--g~~------~~~~~~~~g~~~~~~~~~~a~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~ 309 (399)
T 2oga_A 240 NY--GSR------QKYSHETKGTNSRLDEMQAAVLRIRL--AHLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPV 309 (399)
T ss_dssp BT--TCS------STTCCCSCCCBCCCCHHHHHHHHHHH--HTHHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEECC
T ss_pred hc--Ccc------ccccccccccCCCcCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCcce
Confidence 00 000 00110011122234455555555433 4456777888889999999999988887653332 2222
Q ss_pred --EEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeee--EC--------C-------------
Q 010125 425 --CFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAV--LG--------G------------- 479 (517)
Q Consensus 425 --~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~--~~--------g------------- 479 (517)
.|.+.... ..++.+.|.++|+....... .. +
T Consensus 310 ~~~~~~~~~~------------------------~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 365 (399)
T 2oga_A 310 WHLFTVRTER------------------------RDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFA 365 (399)
T ss_dssp CSSEEEECSS------------------------HHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHH
T ss_pred eEEEEEECCC------------------------HHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHH
Confidence 24433210 24566777777865432110 00 0
Q ss_pred EeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 010125 480 IYAIRFATGATLTEKRHVVVAWTVVQQHLEAF 511 (517)
Q Consensus 480 ~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l 511 (517)
..++|+++ ++.++++|+++++++|+++.+++
T Consensus 366 ~~~lRi~~-~~~~t~edi~~~~~~l~~~~~~l 396 (399)
T 2oga_A 366 RQVLSLPI-GPHLERPQALRVIDAVREWAERV 396 (399)
T ss_dssp HHEEEECC-STTCCHHHHHHHHHHHHHHHHSC
T ss_pred hCEEEccC-CCCCCHHHHHHHHHHHHHHHHHh
Confidence 25799997 56788999999999999887654
No 116
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.89 E-value=3.9e-22 Score=209.20 Aligned_cols=335 Identities=11% Similarity=0.034 Sum_probs=196.5
Q ss_pred HHHHHHHHHhcc-cccccc------cccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHH
Q 010125 107 AGFLGEMLSSGF-NIVGFN------WISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARD 179 (517)
Q Consensus 107 ~~~~~~~l~~~~-n~~~~~------~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~ 179 (517)
+..+.+.+...+ |..... |...+...++|+.+++++++++|.+.+.. +..++++|||+||+.++.+..+
T Consensus 67 ~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~----~~~v~~~sGt~An~~al~al~~ 142 (490)
T 2a7v_A 67 SRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQW----GVNVQPYSGSPANLAVYTALLQ 142 (490)
T ss_dssp CHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTE----EEECCCSSHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccC----ceEEeCCchHHHHHHHHHHHcC
Confidence 444555555443 443322 33345567899999999999999986420 0135667899999988876633
Q ss_pred HHHHHhcccCCCCeEEEeCCCCchHHH--------HHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcc
Q 010125 180 RVLNKIGRENISKLIVYGSDQTHCALQ--------KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIP 251 (517)
Q Consensus 180 ~~~~~~g~~~~~~~~v~~s~~~H~s~~--------kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p 251 (517)
+++.|++++..|.+.. +.+...|... .++.+++++ +++.+|+++|++++++.+ |
T Consensus 143 -----------pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~-~~~~~~vd~-~~~~iD~d~le~~l~~~~-----~ 204 (490)
T 2a7v_A 143 -----------PHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFF-ESMPYKLNP-KTGLIDYNQLALTARLFR-----P 204 (490)
T ss_dssp -----------SCEECCC--------------------------------CCBCT-TTCSBCHHHHHHHHHHHC-----C
T ss_pred -----------CCCEecccCccccccccchhhhcchhHHHcCCeE-EEEeccccc-ccCCcCHHHHHHHHhhcC-----C
Confidence 6778888887775421 1344556511 233445553 358999999999997532 2
Q ss_pred eEEEeeccCCccccccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEE
Q 010125 252 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWV 331 (517)
Q Consensus 252 ~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~ 331 (517)
.+|+++.. ..|.+.|+++|++||++||+++|+|+||+.+..........+ ..+|++++++||+|++|.| |++++
T Consensus 205 klIi~~~s--~~~~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~---~~aDiv~~S~hK~l~Gp~G-G~i~~ 278 (490)
T 2a7v_A 205 RLIIAGTS--AYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPF---KHADIVTTTTHKTLRGARS-GLIFY 278 (490)
T ss_dssp SEEEECCS--SCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGG---GTCSEEEEESSGGGCSCSC-EEEEE
T ss_pred cEEEEcCC--CCCCcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCC---CCCCEEEECCcccCccccc-hheee
Confidence 35655433 346678999999999999999999999976544322221112 3799999999999988865 88888
Q ss_pred eCch-------------hHHhhhcCCccccCCccccccccccCCCccccCCCCCC-chHHHHHHHHhcHHHHHHHHHHHH
Q 010125 332 KDPR-------------ALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFR-SLKLWFVIRNYGVANLRHFLRSHV 397 (517)
Q Consensus 332 ~~~~-------------~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~-al~~~~~l~~~g~~g~~~~i~~~~ 397 (517)
++.. .+.+.+. ..++. +.+++.... ..++..+++..-.+.+.++.++..
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~i~---~~~~~--------------g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~ 341 (490)
T 2a7v_A 279 RKGVKAVDPKTGREIPYTFEDRIN---FAVFP--------------SLQGGPHNHAIAAVAVALKQACTPMFREYSLQVL 341 (490)
T ss_dssp ECSEEEEETTTEEEEECCCHHHHH---HHHTT--------------TTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred ccchhcccccccchhhHHHHHHHH---HHhcc--------------cCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 7641 0111110 00000 112221111 123333444443356688889999
Q ss_pred HHHHHHHHHHhcCCCeEEecC-CCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeee
Q 010125 398 NMAKLFERLVSGDKRFEIVFP-CHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAV 476 (517)
Q Consensus 398 ~~a~~l~~~l~~~~~~~l~~~-~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~ 476 (517)
+++++|++.|++. |++++.. ....++.+.+.+.++ ...++.+.|.+.|+..-..+.
T Consensus 342 ~na~~L~~~L~~~-G~~v~~~~t~t~lv~vdl~~~g~----------------------~~~~~~~~L~~~GI~v~~~~~ 398 (490)
T 2a7v_A 342 KNARAMADALLER-GYSLVSGGTDNHLVLVDLRPKGL----------------------DGARAERVLELVSITANKNTC 398 (490)
T ss_dssp HHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECTTTTC----------------------CHHHHHHHHHHTTEECEEECC
T ss_pred HHHHHHHHHHHHc-CcEEecCCCCCeEEEEEeCCCCC----------------------CHHHHHHHHHhCCeEEecCcc
Confidence 9999999999986 8998743 345677777655421 123456666667765322211
Q ss_pred EC-----CEeEEEEEec---CCCCcHHHHHHHHHHHHHHHH
Q 010125 477 LG-----GIYAIRFATG---ATLTEKRHVVVAWTVVQQHLE 509 (517)
Q Consensus 477 ~~-----g~~~lR~~~~---~~~t~~~di~~l~~~l~~~~~ 509 (517)
.. ....||+++. +...+++|++++++.|.++..
T Consensus 399 p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~ 439 (490)
T 2a7v_A 399 PGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp TTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCceEecccccccCCCCHHHHHHHHHHHHHHHH
Confidence 11 2357999652 334578899999999988765
No 117
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.89 E-value=1.8e-21 Score=200.19 Aligned_cols=297 Identities=14% Similarity=0.129 Sum_probs=197.4
Q ss_pred HHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHHcCCC
Q 010125 136 NIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQIVGID 215 (517)
Q Consensus 136 ~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g 215 (517)
.++++.+++++|.+. ..++++ |+.+|..++.+.... .+++.|+++...|.++..+++..|+
T Consensus 94 ~~l~~~la~~~~~~~--------~i~~~s-G~~a~~~~~~~l~~~---------~~gd~Vl~~~~~~~~~~~~~~~~g~- 154 (401)
T 2bwn_A 94 RRLEAEIAGLHQKEA--------ALVFSS-AYNANDATLSTLRVL---------FPGLIIYSDSLNHASMIEGIKRNAG- 154 (401)
T ss_dssp HHHHHHHHHHTTCSE--------EEEESC-HHHHHHHHHHHHHHH---------STTCEEEEETTCCHHHHHHHHHSCC-
T ss_pred HHHHHHHHHHhCCCc--------EEEECC-cHHHHHHHHHHHhcC---------CCCCEEEECchhhHHHHHHHHHcCC-
Confidence 345566667777642 456655 455887776654221 0456788889999999999999999
Q ss_pred CCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEccccccccccc
Q 010125 216 VKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACI 295 (517)
Q Consensus 216 ~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~ 295 (517)
+++.+|.+ |+++|++++++... ..+.+|+++.+++++|.+.|+++|+++|++||+++|+|++|+.+.+
T Consensus 155 --~~~~v~~~-------d~~~le~~l~~~~~--~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~- 222 (401)
T 2bwn_A 155 --PKRIFRHN-------DVAHLRELIAADDP--AAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMY- 222 (401)
T ss_dssp --CEEEECTT-------CHHHHHHHHHHSCT--TSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTS-
T ss_pred --eEEEEcCC-------CHHHHHHHHHhhcc--CCceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEecccccccc-
Confidence 99999863 78999999874321 1345889999999999999999999999999999999999985432
Q ss_pred Cccccccc--cCC-CCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcC-CccccCCccccccccccCCCccccCCC-
Q 010125 296 CPEFRHFI--DGV-EGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLST-NPEYLKNKATESMQVVDYKDWQITLSR- 370 (517)
Q Consensus 296 ~~~~~~~~--~g~-~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~-~~~yl~~~~~~~~~~~~~~~~~~~~sr- 370 (517)
.+...... .++ +..|.+..+++|+++.| | |+++.+ +... +.+.. ...+.. ..+.
T Consensus 223 ~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~-G-G~~~~~-~~~~-~~l~~~~~~~~~-----------------~~~~~ 281 (401)
T 2bwn_A 223 GPRGAGVAERDGLMHRIDIFNGTLAKAYGVF-G-GYIAAS-ARMV-DAVRSYAPGFIF-----------------STSLP 281 (401)
T ss_dssp STTSCCHHHHHTCGGGCSEEEEESSSTTCSC-C-EEEEEC-HHHH-HHHHHHCHHHHT-----------------SBCCC
T ss_pred CCCCceeeeccCccccCcEEEeechhhccCC-C-CEEecC-HHHH-HHHHHhCcCcee-----------------cCCCC
Confidence 11111111 122 34688888999999865 2 666653 3322 22211 111111 1111
Q ss_pred CCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCeeEEEEEecCCCcchhhhhhhhhccccchH
Q 010125 371 RFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEE 450 (517)
Q Consensus 371 ~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~ 450 (517)
......+..+++.+...+++++.++..++++++.+.|++. +++++ ++..++++|.+..
T Consensus 282 ~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~-------------------- 339 (401)
T 2bwn_A 282 PAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL-GMPII-DHGSHIVPVVIGD-------------------- 339 (401)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCSSSCEEEECCC--------------------
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC-CCccc-CCCCCeEEEEeCC--------------------
Confidence 1223345566666655677888999999999999999887 77766 4556677777632
Q ss_pred HHHHHHHHHHHHHHH-hcCcEEEeeeeE---CCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 010125 451 EQINEFNRELLESIN-ASGKAYMTHAVL---GGIYAIRFATGATLTEKRHVVVAWTVVQQHLEA 510 (517)
Q Consensus 451 ~~~~~~~~~l~~~l~-~~g~~~~~~~~~---~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~ 510 (517)
+....++.+.|. +.|+.......+ .+..++|+++. ..++++|+++++++|+++.++
T Consensus 340 ---~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~-~~~t~~~i~~~~~~l~~~~~~ 399 (401)
T 2bwn_A 340 ---PVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPS-PVHDLKQIDGLVHAMDLLWAR 399 (401)
T ss_dssp ---HHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCC-TTSCHHHHHHHHHHHHHHC--
T ss_pred ---hHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEee-CCCCHHHHHHHHHHHHHHHHh
Confidence 122356677775 667654322211 23468999985 566888999999999887654
No 118
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.89 E-value=8.8e-22 Score=199.71 Aligned_cols=306 Identities=10% Similarity=0.023 Sum_probs=195.7
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHH--
Q 010125 128 SPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCAL-- 205 (517)
Q Consensus 128 sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~-- 205 (517)
++...++.+++++++++++|.+++. ...++|+|||+|+..++.+..+ +++.|++....|++.
T Consensus 44 ~~~~~~~~~~~~~~la~~~g~~~~~-----~~i~~t~g~t~a~~~~~~~l~~-----------~gd~vl~~~~~~~~~~~ 107 (362)
T 2c0r_A 44 GAVYEAVHNEAQARLLALLGNPTGY-----KVLFIQGGASTQFAMIPMNFLK-----------EGQTANYVMTGSWASKA 107 (362)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCSSE-----EEEEESSHHHHHHHHHHHHHCC-----------TTCEEEEEECSHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCc-----EEEEECCCchHHHHHHHHhcCC-----------CCCeEEEEecCcHhHHH
Confidence 5666777789999999999997531 0246789999999877765532 444565555666663
Q ss_pred HHHHHHcCCCCCCEEEEecCCC--CCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc-cChhHHHHHHHHhCCe
Q 010125 206 QKAAQIVGIDVKNFRAIKTTKS--SSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV-DPLKPLCDVAKQFGIW 282 (517)
Q Consensus 206 ~kaa~~~G~g~~~v~~vp~d~~--~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i-dpl~eI~~i~~~~gi~ 282 (517)
...++..| +++.+|++.+ .+..+|.++++ |+++ +.+|++++++|+||.+ .|+++| ||+|
T Consensus 108 ~~~~~~~g----~~~~v~~~~~~~~~~~~~~~~~~--i~~~------t~~v~~~~~~n~tG~~~~~l~~i------~~~~ 169 (362)
T 2c0r_A 108 LKEAKLIG----DTHVAASSEASNYMTLPKLQEIQ--LQDN------AAYLHLTSNETIEGAQFKAFPDT------GSVP 169 (362)
T ss_dssp HHHHHHHS----CEEEEEECGGGTTCSCCCGGGCC--CCTT------EEEEEEESEETTTTEECSSCCCC------TTSC
T ss_pred HHHHHHhC----CeEEEecccccccccCCCHHHcc--cCCC------cCEEEEeCCcCccceeccccccc------CCCE
Confidence 35555554 5778887631 11234665543 4332 4588999999999994 899988 8999
Q ss_pred EEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCccccCCccccccccccCC
Q 010125 283 VHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYK 362 (517)
Q Consensus 283 lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~ 362 (517)
+|||+||+.+....+ +...|+++.++|||++ |.|+|+++++++.. +.+....+++.+... .....
T Consensus 170 vivD~a~~~~~~~~~--------~~~~d~~~~s~~K~~g-~~G~G~l~~~~~~~--~~l~~~~~~~~~~~~--~~~~~-- 234 (362)
T 2c0r_A 170 LIGDMSSDILSRPFD--------LNQFGLVYAGAQKNLG-PSGVTVVIVREDLV--AESPKHLPTMLRYDT--YVKNN-- 234 (362)
T ss_dssp EEEECTTTTTSSCCC--------GGGCSEEEEETTTTTC-CSSCEEEEEEGGGS--SSCCTTSCGGGCHHH--HHHTT--
T ss_pred EEEEChhhccCCccc--------hhHCcEEEEecccccc-CcCcEEEEEcHHHH--hhccccCchHHhHHH--Hhhcc--
Confidence 999999977643321 2234999999999996 77899999975421 122111111110000 00000
Q ss_pred CccccCCCC-CCchHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHhcCCCe-EEecCC---CeeEEEEEecCCCcchh
Q 010125 363 DWQITLSRR-FRSLKLWFVIRNYGVA-NLRHFLRSHVNMAKLFERLVSGDKRF-EIVFPC---HFAVVCFRVSPSPVLMD 436 (517)
Q Consensus 363 ~~~~~~sr~-~~al~~~~~l~~~g~~-g~~~~i~~~~~~a~~l~~~l~~~~~~-~l~~~~---~~~~v~f~~~~~~~~~~ 436 (517)
....+.. .....+..+++.+... +++++.++..++++++.+.|++++++ ++..++ ...+++|++..
T Consensus 235 --~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 306 (362)
T 2c0r_A 235 --SLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLAS------ 306 (362)
T ss_dssp --TCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSC------
T ss_pred --CcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCChHHcCCcEEEEEcCC------
Confidence 0001111 1224455566655444 78999999999999999999998546 775332 34567776642
Q ss_pred hhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 010125 437 KLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHLEA 510 (517)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~ 510 (517)
.....++.+.|.+.|++..++... ..++|+|+. ..++++|++++++.|+++.++
T Consensus 307 -----------------~~~~~~~~~~L~~~gi~~~~g~~~--~~~iRis~~-~~~~~e~i~~l~~~l~~~~~~ 360 (362)
T 2c0r_A 307 -----------------EELEKEFVKASEQEGFVGLKGHRS--VGGLRASIY-NAVPYESCEALVQFMEHFKRS 360 (362)
T ss_dssp -----------------HHHHHHHHHHHHHTTEESCBCCTT--TCSEEEECC-TTSCHHHHHHHHHHHHHHHHH
T ss_pred -----------------cchHHHHHHHHHHCCCeeccCCCC--CCEEEEECC-CCCCHHHHHHHHHHHHHHHHh
Confidence 122456777787888744322211 246999995 466788999999999987654
No 119
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.89 E-value=1.1e-22 Score=209.29 Aligned_cols=330 Identities=12% Similarity=0.079 Sum_probs=212.0
Q ss_pred HHHHHHHHHhccc-cccc------ccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHH
Q 010125 107 AGFLGEMLSSGFN-IVGF------NWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARD 179 (517)
Q Consensus 107 ~~~~~~~l~~~~n-~~~~------~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~ 179 (517)
+..+.+.+...+. .... .|...+...++|+++++++++++|.+.. .+++++||+|+..++.++..
T Consensus 36 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~~--------~i~~~sGt~a~~~a~~~~~~ 107 (405)
T 2vi8_A 36 SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHA--------NVQPHSGAQANMAVYFTVLE 107 (405)
T ss_dssp CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE--------ECCCSSHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCce--------EEEecCcHHHHHHHHHHhcC
Confidence 5556666666653 2211 1334466788998899999999998743 34455569999988877632
Q ss_pred HHHHHhcccCCCCeEEEeCCCCchHHHH-H--HHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEe
Q 010125 180 RVLNKIGRENISKLIVYGSDQTHCALQK-A--AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCA 256 (517)
Q Consensus 180 ~~~~~~g~~~~~~~~v~~s~~~H~s~~k-a--a~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~ 256 (517)
+++.|+++..+|.++.. + +...|.+. .++.+++++ .++.+|+++|++++++.. +.+|++
T Consensus 108 -----------~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~-~~~~~d~~~l~~~i~~~~-----~~~v~~ 169 (405)
T 2vi8_A 108 -----------HGDTVLGMNLSHGGHLTHGSPVNFSGVQY-NFVAYGVDP-ETHVIDYDDVREKARLHR-----PKLIVA 169 (405)
T ss_dssp -----------TTCEEEEECGGGTCCTTTTCTTSHHHHHS-EEEEECBCT-TTCSBCHHHHHHHHHHHC-----CSEEEE
T ss_pred -----------CCCEEEEecccccchhcccchhhhcccee-EEEeccccc-ccCCcCHHHHHHHHHhcC-----CeEEEE
Confidence 45668888889977643 1 12333211 567777653 357899999999997621 124554
Q ss_pred eccCCccccccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchh
Q 010125 257 TIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRA 336 (517)
Q Consensus 257 t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~ 336 (517)
+ + +..|...|+++|.++|++||+++|+|++|+.+....+... .++..+|+++.++||++++|.| |+++++ +..
T Consensus 170 ~-~-~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~---~~~~~~di~~~s~sK~~~g~~g-G~~~~~-~~~ 242 (405)
T 2vi8_A 170 A-A-AAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHP---NPVPYAHFVTTTTHKTLRGPRG-GMILCQ-EQF 242 (405)
T ss_dssp C-C-SSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSC---CSTTTCSEEEEESSSTTCCCSC-EEEEEC-HHH
T ss_pred e-C-CCCCccCCHHHHHHHHHHcCCEEEEEccccccccccCcCC---CccccCCEEEEeccccCCCCCC-eEEEEc-HHH
Confidence 3 2 3357777999999999999999999999985433222111 1234689999999999987877 888876 332
Q ss_pred HHhhhcCC-ccccCCccccccccccCCCccccCCCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 010125 337 LVSSLSTN-PEYLKNKATESMQVVDYKDWQITLSRRF-RSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFE 414 (517)
Q Consensus 337 ~~~~~~~~-~~yl~~~~~~~~~~~~~~~~~~~~sr~~-~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~ 414 (517)
. +.+... ..+. . ++... ....+.++++.+..++++++.++..++++++.+.|++. +++
T Consensus 243 ~-~~l~~~~~~~~-----------------~-~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 302 (405)
T 2vi8_A 243 A-KQIDKAIFPGI-----------------Q-GGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE-GFT 302 (405)
T ss_dssp H-HHHHHHHTTTT-----------------C-SSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCE
T ss_pred H-HHHHhhhcccc-----------------c-CCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCe
Confidence 2 222110 0010 0 11111 11233445554444678899999999999999999988 888
Q ss_pred EecC-CCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeee------eECCEeEEEEEe
Q 010125 415 IVFP-CHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHA------VLGGIYAIRFAT 487 (517)
Q Consensus 415 l~~~-~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~------~~~g~~~lR~~~ 487 (517)
++.+ ...+++.+.+...+. ....+.+.|.+.|+....+. ...+..++|+++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~ 360 (405)
T 2vi8_A 303 LVSGGTDNHLLLVDLRPQQL----------------------TGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGT 360 (405)
T ss_dssp EGGGSCSSSEEEEECGGGTC----------------------CHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEEC
T ss_pred EecCCCCceEEEEEccCCCC----------------------CHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEee
Confidence 8754 345667777643110 12455666767786543322 111245799998
Q ss_pred cCC---CCcHHHHHHHHHHHHHHHHHH
Q 010125 488 GAT---LTEKRHVVVAWTVVQQHLEAF 511 (517)
Q Consensus 488 ~~~---~t~~~di~~l~~~l~~~~~~l 511 (517)
..+ ..+++|+++++++|+++.+++
T Consensus 361 ~~~~~~~~~~~~i~~~~~~l~~~~~~~ 387 (405)
T 2vi8_A 361 AAVTTRGFGLEEMDEIAAIIGLVLKNV 387 (405)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHTCT
T ss_pred eeeeecCCCHHHHHHHHHHHHHHHhcc
Confidence 531 457889999999999887654
No 120
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.89 E-value=1.1e-21 Score=199.73 Aligned_cols=317 Identities=12% Similarity=0.022 Sum_probs=212.6
Q ss_pred HHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhc
Q 010125 107 AGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIG 186 (517)
Q Consensus 107 ~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g 186 (517)
+..+.+.+...+ .....|....+..++++++.+|+.+.+|.+... ...++|+|||+|+..++.+...
T Consensus 38 ~~~v~~a~~~~~-~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~-----~~i~~t~g~~~al~~~~~~~~~------- 104 (376)
T 3ezs_A 38 PKFIQDALKNHT-HSLNIYPKSAFEESLRAAQRGFFKRRFKIELKE-----NELISTLGSREVLFNFPSFVLF------- 104 (376)
T ss_dssp CHHHHHHHHTTG-GGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCG-----GGEEEESSSHHHHHHHHHHHTT-------
T ss_pred CHHHHHHHHHhh-hhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCH-----HHEEECcCcHHHHHHHHHHHcC-------
Confidence 445666666655 334456555567899999999999999983211 2789999999999888776532
Q ss_pred ccCCC--CeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccc
Q 010125 187 RENIS--KLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAIT 264 (517)
Q Consensus 187 ~~~~~--~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G 264 (517)
+ ++.|++..++|.++..+++..|. +++.+|++.++ .+++ +|++++.++++ +|+++.++|++|
T Consensus 105 ----~~~gd~vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~--~~~~-~l~~~~~~~~~------~v~~~~p~nptG 168 (376)
T 3ezs_A 105 ----DYQNPTIAYPNPFYQIYEGAAKFIKA---KSLLMPLTKEN--DFTP-SLNEKELQEVD------LVILNSPNNPTG 168 (376)
T ss_dssp ----TCSSCEEEEEESCCTHHHHHHHHTTC---EEEEEECCGGG--TSCC-CCCHHHHHHCS------EEEECSSCTTTC
T ss_pred ----CCCCCEEEEecCCcHhHHHHHHHcCC---EEEEcccCCCC--Ccch-hHHhhhccCCC------EEEEcCCCCCcC
Confidence 4 66788889999999999999999 99999997532 4455 77788776443 677788999999
Q ss_pred cccC---hhHHHHHHHHhCCeEEcccccccccccCccccccccC-------CCCCCeeeeccccccC-CCCcceEEEEeC
Q 010125 265 AVDP---LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDG-------VEGADSFSLNAHKWFF-ATLDCCCLWVKD 333 (517)
Q Consensus 265 ~idp---l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g-------~~~aDsi~~~~hK~l~-~p~~~g~l~~~~ 333 (517)
.+-| +++|+++|++||+++|+|++|+.+.... ........ ....+.+..++||+++ .+..+|+++..
T Consensus 169 ~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~- 246 (376)
T 3ezs_A 169 RTLSLEELISWVKLALKHDFILINDECYSEIYENT-PPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGD- 246 (376)
T ss_dssp CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSS-CCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEEEEC-
T ss_pred CCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCC-CCCCHHHccccccccccCcEEEEecchhccCCccceeEEEeeC-
Confidence 9866 6778888999999999999998765432 11111110 1256688889999996 55778887763
Q ss_pred chhHHhhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 010125 334 PRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYG-VANLRHFLRSHVNMAKLFERLVSGDKR 412 (517)
Q Consensus 334 ~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g-~~g~~~~i~~~~~~a~~l~~~l~~~~~ 412 (517)
+... +.+.....+. +.....+..+++...+. .+.++++.++..++++++.+.|+ +
T Consensus 247 ~~~~-~~~~~~~~~~--------------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~---~ 302 (376)
T 3ezs_A 247 SRLL-EKYKAFRAYL--------------------GYTSANAIQKASEAAWLDDRHAEFFRNIYANNLKLARKIFK---N 302 (376)
T ss_dssp HHHH-HHHHHHHTTT--------------------CCCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHST---T
T ss_pred HHHH-HHHHHHHhhh--------------------cCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhc---C
Confidence 3322 2221100000 00112233333333332 34567788888889999999887 4
Q ss_pred eEEecCCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHh-cCcEEEeeeeEC----CEeEEEEEe
Q 010125 413 FEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINA-SGKAYMTHAVLG----GIYAIRFAT 487 (517)
Q Consensus 413 ~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~----g~~~lR~~~ 487 (517)
+. .+....++.+.+. . ..++.++|.+ .|+...++..+. +..++|+++
T Consensus 303 ~~--~~~~~~~~~~~~~-~-------------------------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~ 354 (376)
T 3ezs_A 303 TL--IYPYSFYVYLPVQ-N-------------------------GENFAKTLYQNEGIITLPALYLGRNRIGADYVRLAL 354 (376)
T ss_dssp CC--CCSBSSEEEEECS-C-------------------------HHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEEC
T ss_pred CC--CCCcceEEEEECC-C-------------------------HHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEE
Confidence 44 2333344455543 2 2455666665 687654443332 457899998
Q ss_pred cCCCCcHHHHHHHHHHHHHHHH
Q 010125 488 GATLTEKRHVVVAWTVVQQHLE 509 (517)
Q Consensus 488 ~~~~t~~~di~~l~~~l~~~~~ 509 (517)
+. +++++++++++|.++.+
T Consensus 355 ~~---~~~~i~~~l~~l~~~l~ 373 (376)
T 3ezs_A 355 VY---DTPLLEKPLEIIETYRE 373 (376)
T ss_dssp CS---CHHHHHHHHHHHHHHHC
T ss_pred cC---CHHHHHHHHHHHHHHHH
Confidence 53 78899999999988764
No 121
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.89 E-value=7.5e-22 Score=202.30 Aligned_cols=329 Identities=13% Similarity=0.059 Sum_probs=205.2
Q ss_pred HHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCC
Q 010125 111 GEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENI 190 (517)
Q Consensus 111 ~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~ 190 (517)
.+.+...+... .+..++...++++. +++++|.+ .+++++|||+|+..++.+.+- .
T Consensus 23 ~~a~~~~~~~~--~~~~~~~~~~l~~~----la~~~~~~---------~~~~~~~gt~al~~~~~~~~~----------~ 77 (393)
T 1mdo_A 23 LAAVKTVLDSG--WITTGPKNQELEAA----FCRLTGNQ---------YAVAVSSATAGMHIALMALGI----------G 77 (393)
T ss_dssp HHHHHHHHHHT--CCSSSHHHHHHHHH----HHHHHCCS---------EEEEESCHHHHHHHHHHHTTC----------C
T ss_pred HHHHHHHHhcC--CcCCChHHHHHHHH----HHHHhCCC---------cEEEecChHHHHHHHHHHcCC----------C
Confidence 45555544332 22344556666655 45555653 479999999999888876521 1
Q ss_pred CCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChh
Q 010125 191 SKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLK 270 (517)
Q Consensus 191 ~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~ 270 (517)
+++.|+++..+|.++..+++..|+ +++.+|++++ ++.+|+++|+++|++++ .+|+++ +++|.+.|++
T Consensus 78 ~gd~Vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~-~~~~d~~~l~~~l~~~~------~~v~~~---~~~G~~~~~~ 144 (393)
T 1mdo_A 78 EGDEVITPSMTWVSTLNMIVLLGA---NPVMVDVDRD-TLMVTPEHIEAAITPQT------KAIIPV---HYAGAPADLD 144 (393)
T ss_dssp TTCEEEEESSSCHHHHHHHHHTTC---EEEEECBCTT-TCCBCHHHHHHHCCTTE------EEECCB---CGGGCCCCHH
T ss_pred CCCEEEeCCCccHhHHHHHHHCCC---EEEEEeccCC-cCCCCHHHHHHhcCCCc------eEEEEe---CCCCCcCCHH
Confidence 556788999999999999999999 9999999853 47899999999987533 355554 4789999999
Q ss_pred HHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccc--cccCCCCcceEEEEeCchhHHhhhcCCc-cc
Q 010125 271 PLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAH--KWFFATLDCCCLWVKDPRALVSSLSTNP-EY 347 (517)
Q Consensus 271 eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~h--K~l~~p~~~g~l~~~~~~~~~~~~~~~~-~y 347 (517)
+|.++|++||+++|+|++|+.+..... +.. +. .|.+++++| |+++.+ .+|++++++++.......... ..
T Consensus 145 ~i~~l~~~~~~~li~D~a~~~g~~~~~--~~~--~~--~d~~~~S~~k~K~l~~~-~~g~~~~~~~~~~~~l~~~~~~~~ 217 (393)
T 1mdo_A 145 AIYALGERYGIPVIEDAAHATGTSYKG--RHI--GA--RGTAIFSFHAIKNITCA-EGGIVVTDNPQFADKLRSLKFHGL 217 (393)
T ss_dssp HHHHHHHHHTCCBCEECTTCTTCEETT--EET--TS--SSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTBTTE
T ss_pred HHHHHHHHcCCeEEEECccccCCeECC--eec--CC--CCeEEEeCCCCCccccc-cceEEEeCCHHHHHHHHHHHhcCC
Confidence 999999999999999999986543321 111 11 899999999 999754 567777665543322111000 00
Q ss_pred cCCccccccccccCCCcccc---CC--CCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC---
Q 010125 348 LKNKATESMQVVDYKDWQIT---LS--RRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPC--- 419 (517)
Q Consensus 348 l~~~~~~~~~~~~~~~~~~~---~s--r~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~--- 419 (517)
..... ........+.++ .+ .+...+....++. ..+++++..++..++++++.+.|++.+ +++...+
T Consensus 218 ~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~--~l~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~ 291 (393)
T 1mdo_A 218 GVDAW---DRQSGGRAPQAEVLAPGYKYNLPDLNAAIALA--QLQKLDALNARRAAIAAQYHQAMADLP-FQPLSLPSWE 291 (393)
T ss_dssp ECC--------------CCEESSCCCBCCCCHHHHHHHHH--HHHTHHHHHHHHHHHHHHHHHHHHTSS-CEECCCCSSC
T ss_pred cccch---hhhcccccccccccccCccCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCC-cccccCCCCC
Confidence 00000 000000001111 11 1223333333333 345678888888999999999999886 8775322
Q ss_pred ---CeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeE----------------C--
Q 010125 420 ---HFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVL----------------G-- 478 (517)
Q Consensus 420 ---~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~----------------~-- 478 (517)
...++++++.+.. .+....++.+.|.+.|+........ .
T Consensus 292 ~~~~~~~~~v~~~~~~--------------------~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (393)
T 1mdo_A 292 HIHAWHLFIIRVDEAR--------------------CGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDT 351 (393)
T ss_dssp EECCCSCEEEECCHHH--------------------HSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHH
T ss_pred CCceeEEEEEEecccc--------------------cccCHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhH
Confidence 2235667664200 0001346777777778643221110 0
Q ss_pred ---CEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 010125 479 ---GIYAIRFATGATLTEKRHVVVAWTVVQQHLEAF 511 (517)
Q Consensus 479 ---g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l 511 (517)
+..++|+++ ...++++|+++++++|+++.+..
T Consensus 352 ~~~~~~~lRi~~-~~~~t~~~i~~~~~~l~~~~~~~ 386 (393)
T 1mdo_A 352 EWNSERICSLPL-FPDMTESDFDRVITALHQIAGQG 386 (393)
T ss_dssp HHHHTTEEEECC-CTTCCHHHHHHHHHHHHHHHC--
T ss_pred HHHHhCEEEecC-CCCCCHHHHHHHHHHHHHHHhcC
Confidence 123799997 46778899999999999886543
No 122
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.89 E-value=2.4e-21 Score=196.65 Aligned_cols=314 Identities=11% Similarity=0.045 Sum_probs=203.9
Q ss_pred HHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcc
Q 010125 108 GFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGR 187 (517)
Q Consensus 108 ~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~ 187 (517)
..+.+.+...+.. ...|. .+...++++. +++++|.+++ ..++|+|+|+++..++.+. .
T Consensus 40 ~~v~~a~~~~~~~-~~~y~-~~~~~~l~~~----la~~~~~~~~-------~v~~~~g~~~al~~~~~~~--~------- 97 (364)
T 1lc5_A 40 VSVKRALIDNLDC-IERYP-DADYFHLHQA----LARHHQVPAS-------WILAGNGETESIFTVASGL--K------- 97 (364)
T ss_dssp HHHHHHHHHTGGG-GGSCC-CTTCHHHHHH----HHHHHTSCGG-------GEEEESSHHHHHHHHHHHH--C-------
T ss_pred HHHHHHHHHHHHH-hhcCC-CCCHHHHHHH----HHHHHCcCHH-------HEEECCCHHHHHHHHHHHc--C-------
Confidence 4455666655543 23443 2445555555 4455577654 6899999999998877665 1
Q ss_pred cCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcccccc
Q 010125 188 ENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVD 267 (517)
Q Consensus 188 ~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~id 267 (517)
+ ..|++..++|.++..+++..|. +++.+|.+.++++.+ ++++.+.+.+ .+.+|+++.+++++|.+-
T Consensus 98 ---g-d~vl~~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~-l~~~~~~~~~------~~~~v~i~~p~nptG~~~ 163 (364)
T 1lc5_A 98 ---P-RRAMIVTPGFAEYGRALAQSGC---EIRRWSLREADGWQL-TDAILEALTP------DLDCLFLCTPNNPTGLLP 163 (364)
T ss_dssp ---C-SEEEEEESCCTHHHHHHHHTTC---EEEEEECCGGGTTCC-CTTHHHHCCT------TCCEEEEESSCTTTCCCC
T ss_pred ---C-CeEEEeCCCcHHHHHHHHHcCC---eEEEEeCCcccccch-hHHHHHhccC------CCCEEEEeCCCCCCCCCC
Confidence 3 4577778999999999999999 999999874222333 3434443322 234677788999999998
Q ss_pred C---hhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCC-CcceEEEEeCchhHHhhhcC
Q 010125 268 P---LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCCLWVKDPRALVSSLST 343 (517)
Q Consensus 268 p---l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p-~~~g~l~~~~~~~~~~~~~~ 343 (517)
| +++|+++|++||+++++|++|+.+........... +....+.++.++||+++.| ..+|++++.+++... .+..
T Consensus 164 ~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~-~l~~ 241 (364)
T 1lc5_A 164 ERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPAL-KDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMA-RMRR 241 (364)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGC-TTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHH-HHHH
T ss_pred CHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHh-ccCCCEEEEEECchhhcCCccceEEEEECCHHHHH-HHHH
Confidence 8 99999999999999999999987653211111111 1124678888999999744 567988834444322 2211
Q ss_pred CccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcH-HHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCee
Q 010125 344 NPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGV-ANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFA 422 (517)
Q Consensus 344 ~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~-~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~~~ 422 (517)
. . . .+ ....+..+++...+.. +.++++.++..++++++.+.|++.|++++. ++..+
T Consensus 242 ~---~-~------------~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~g~ 298 (364)
T 1lc5_A 242 Q---Q-M------------PW------SVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLPLLTVY-PGRAN 298 (364)
T ss_dssp H---S-C------------TT------CSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEC-CCSSS
T ss_pred h---C-C------------CC------CCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCCCEEC-CCCCe
Confidence 0 0 0 00 1133455555555532 457778888889999999999988899875 55666
Q ss_pred EEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHH
Q 010125 423 VVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLG--GIYAIRFATGATLTEKRHVVVA 500 (517)
Q Consensus 423 ~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--g~~~lR~~~~~~~t~~~di~~l 500 (517)
++.+.+... ..++.+.|.++|+...++..+. +..++|++++ +.+|++++
T Consensus 299 ~~~~~~~~~-------------------------~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~----~~~~~~~l 349 (364)
T 1lc5_A 299 YLLLRCERE-------------------------DIDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR----SAAQNERL 349 (364)
T ss_dssp EEEEEESCT-------------------------TCCHHHHHHTTTEECEECTTSTTCCTTEEEEECC----CHHHHHHH
T ss_pred EEEEECCCc-------------------------HHHHHHHHHHCCcEEeeCcccCCCCCCEEEEEeC----CHHHHHHH
Confidence 677766421 1245666777786544433332 2468999974 47799999
Q ss_pred HHHHHHHHHHH
Q 010125 501 WTVVQQHLEAF 511 (517)
Q Consensus 501 ~~~l~~~~~~l 511 (517)
+++|+++.+++
T Consensus 350 ~~~l~~~~~~~ 360 (364)
T 1lc5_A 350 LAALRNVLTGI 360 (364)
T ss_dssp HHHHHHHC---
T ss_pred HHHHHHHhhcc
Confidence 99998886654
No 123
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.89 E-value=8.8e-22 Score=203.34 Aligned_cols=329 Identities=10% Similarity=0.049 Sum_probs=201.7
Q ss_pred HHHHHHHHHhcc-cccc------cccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHH
Q 010125 107 AGFLGEMLSSGF-NIVG------FNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARD 179 (517)
Q Consensus 107 ~~~~~~~l~~~~-n~~~------~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~ 179 (517)
+..+.+.+...+ +... ..|...+....+|+.+.+++++++|.+.. ..++ ++||+|+..++.++.+
T Consensus 38 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-------~i~~-~sGt~a~~~~~~~~~~ 109 (417)
T 3n0l_A 38 LPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFA-------NVQP-NSGSQANQGVYAALIN 109 (417)
T ss_dssp CHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE-------ECCC-SSHHHHHHHHHHHHSC
T ss_pred CHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCc-------ceEe-ccHHHHHHHHHHHhcC
Confidence 344555555554 3221 23344466788999999999999998654 3444 4558999888776632
Q ss_pred HHHHHhcccCCCCeEEEeCCCCchHHHH---HHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEe
Q 010125 180 RVLNKIGRENISKLIVYGSDQTHCALQK---AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCA 256 (517)
Q Consensus 180 ~~~~~~g~~~~~~~~v~~s~~~H~s~~k---aa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~ 256 (517)
+++.|+++..+|.++.. .+...|.+. .++.++++ +++.+|+++|++++++.. +.+|++
T Consensus 110 -----------~gd~vl~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~--~~~~~d~~~l~~~i~~~~-----~~~v~~ 170 (417)
T 3n0l_A 110 -----------PGDKILGMDLSHGGHLTHGAKVSSSGKMY-ESCFYGVE--LDGRIDYEKVREIAKKEK-----PKLIVC 170 (417)
T ss_dssp -----------TTCEEEEECC----------------CCS-EEEEECCC--TTSSCCHHHHHHHHHHHC-----CSEEEE
T ss_pred -----------CCCEEEecccccccccchhhhhhhhccee-eeEeccCC--CCCCcCHHHHHHHHHhcC-----CeEEEE
Confidence 56678888899987655 334445421 34555565 467899999999998421 236666
Q ss_pred eccCCccccccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchh
Q 010125 257 TIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRA 336 (517)
Q Consensus 257 t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~ 336 (517)
+.+++ |.+.|+++|.++|++||+++|+|++|+.+......... .+..+|+++.++||++.+|. +|+++++++..
T Consensus 171 ~~~~~--G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~---~~~~~di~~~s~sK~l~g~~-~G~~~~~~~~~ 244 (417)
T 3n0l_A 171 GASAY--ARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPS---PFPYAHVVSSTTHKTLRGPR-GGIIMTNDEEL 244 (417)
T ss_dssp CCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCC---CTTTCSEEEEESSTTTCSCS-CEEEEESCHHH
T ss_pred CCccc--CccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCC---ccccceEEEeeCccccCCCC-eeEEEECCHHH
Confidence 66553 99999999999999999999999998655443322111 12367999999999997776 58888775543
Q ss_pred HHhhhcCCccccCCccccccccccCCCccccCCCC-CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEE
Q 010125 337 LVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRR-FRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEI 415 (517)
Q Consensus 337 ~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~-~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l 415 (517)
.. .+.. .... +..++.. ....++..++.....+++.++.++..++++++.+.|++ .++++
T Consensus 245 ~~-~~~~---~~~~--------------~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~ 305 (417)
T 3n0l_A 245 AK-KINS---AIFP--------------GIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMD-RKFKL 305 (417)
T ss_dssp HH-HHHH---HHTT--------------TTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH-TTCEE
T ss_pred HH-HHhh---hhCC--------------cccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-CCcee
Confidence 32 2210 0000 0001111 11123444555545567888999999999999999988 58887
Q ss_pred ecC-CCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeee------ECCEeEEEEEec
Q 010125 416 VFP-CHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAV------LGGIYAIRFATG 488 (517)
Q Consensus 416 ~~~-~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~------~~g~~~lR~~~~ 488 (517)
+.. ...+++.+.+.+.+. ....+.+.|.+.|+....... ......+|+++.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~ 363 (417)
T 3n0l_A 306 VSDGTDNHLVLMSFLDREF----------------------SGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTP 363 (417)
T ss_dssp GGGSCSSSEEEEECTTSSS----------------------CHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECH
T ss_pred ccCCCCceEEEEEcccCCC----------------------CHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCH
Confidence 642 344556666544311 124455666677865322211 112356899874
Q ss_pred CC---CCcHHHHHHHHHHHHHHHH
Q 010125 489 AT---LTEKRHVVVAWTVVQQHLE 509 (517)
Q Consensus 489 ~~---~t~~~di~~l~~~l~~~~~ 509 (517)
.. ..++++|+++++.|.++.+
T Consensus 364 ~~~~~~~~~~~i~~~~~~l~~~l~ 387 (417)
T 3n0l_A 364 ALTARGFKEKEMEIVSNYIADILD 387 (417)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHhhCCCCHHHHHHHHHHHHHHHh
Confidence 22 2467899999999988764
No 124
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.88 E-value=1.2e-21 Score=201.62 Aligned_cols=288 Identities=16% Similarity=0.186 Sum_probs=193.3
Q ss_pred hHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHH-
Q 010125 131 ATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAA- 209 (517)
Q Consensus 131 ~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa- 209 (517)
......++.+++++++|.+ ..+++++||+|+..++.++.. +++.|+++..+|.++..++
T Consensus 62 ~~~~~~~l~~~la~~~g~~---------~~i~~~sG~~a~~~~l~~~~~-----------~gd~vi~~~~~~~~~~~~~~ 121 (398)
T 2rfv_A 62 GNPTTDALEKKLAVLERGE---------AGLATASGISAITTTLLTLCQ-----------QGDHIVSASAIYGCTHAFLS 121 (398)
T ss_dssp CCHHHHHHHHHHHHHHTCS---------EEEEESSHHHHHHHHHHHHCC-----------TTCEEEEESSSCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCC---------cEEEECCHHHHHHHHHHHHhC-----------CCCEEEEcCCCcccHHHHHH
Confidence 3445566778888888875 247777788999888876632 5567888899999988876
Q ss_pred ---HHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEcc
Q 010125 210 ---QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVD 286 (517)
Q Consensus 210 ---~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvD 286 (517)
+..|+ +++.+|.+ |+++|++++++++ .+|+++.+++++|.+.|+++|+++|++||+++|+|
T Consensus 122 ~~~~~~g~---~~~~v~~~-------d~~~l~~~i~~~~------~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D 185 (398)
T 2rfv_A 122 HSMPKFGI---NVRFVDAA-------KPEEIRAAMRPET------KVVYIETPANPTLSLVDIETVAGIAHQQGALLVVD 185 (398)
T ss_dssp THHHHTTC---EEEEECTT-------SHHHHHHHCCTTE------EEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHcCC---EEEEeCCC-------CHHHHHHhcCCCC------eEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEE
Confidence 77888 89888863 7999999987543 47888999999999999999999999999999999
Q ss_pred cccccccccCccccccccCCCCCCeeeeccccccCCCCc--ceEEEEeCchhHHhhhcCCccccCCccccccccccCCCc
Q 010125 287 AAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDW 364 (517)
Q Consensus 287 aA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~--~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~ 364 (517)
++|+.+....+. . .++|+++.++||+++.|.+ +|++++++.. +...+.. +...
T Consensus 186 e~~~~~~~~~~~--~-----~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~-~~~~~~~---~~~~-------------- 240 (398)
T 2rfv_A 186 NTFMSPYCQQPL--Q-----LGADIVVHSVTKYINGHGDVIGGIIVGKQEF-IDQARFV---GLKD-------------- 240 (398)
T ss_dssp CTTTCTTTCCGG--G-----GTCSEEEEETTTTTTCSSCCCCEEEEECHHH-HHHHHHT---HHHH--------------
T ss_pred CCCcccccCCch--h-----hCCcEEEEeCcccccCCCCceEEEEEECHHH-HHHHHHH---HHHh--------------
Confidence 999876543221 1 1589999999999988766 5888876542 2211211 1100
Q ss_pred cccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe--------------cC---CCeeEEEEE
Q 010125 365 QITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIV--------------FP---CHFAVVCFR 427 (517)
Q Consensus 365 ~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~--------------~~---~~~~~v~f~ 427 (517)
.. +-....+..|++++.+ +.+..++++..++++++.+.|++.+.++-+ .+ ...++++|.
T Consensus 241 -~~-~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~ 316 (398)
T 2rfv_A 241 -IT-GGCMSPFNAWLTLRGV--KTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFE 316 (398)
T ss_dssp -TT-CCCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEE
T ss_pred -CC-CCCCCHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEE
Confidence 00 0112345556666554 234556677777888888888776543221 11 246788887
Q ss_pred ecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeee----------------------ECC--EeEE
Q 010125 428 VSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAV----------------------LGG--IYAI 483 (517)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~----------------------~~g--~~~l 483 (517)
+... .....++.+.+...|.. ++... ..| ..++
T Consensus 317 ~~~~----------------------~~~~~~l~~~~~~~~i~-~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~i 373 (398)
T 2rfv_A 317 IAGG----------------------LEAGRRMINSVELCLLA-VSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLI 373 (398)
T ss_dssp ETTH----------------------HHHHHHHHTTCSSSEEC-SCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEE
T ss_pred EcCC----------------------HHHHHHHHHhCCcceec-cCCCCcceeeecccccccccCCHHHHHhcCCCCCeE
Confidence 6431 12233455444333321 11110 012 4689
Q ss_pred EEEecCCCCcHHHHHHHHHHHHHH
Q 010125 484 RFATGATLTEKRHVVVAWTVVQQH 507 (517)
Q Consensus 484 R~~~~~~~t~~~di~~l~~~l~~~ 507 (517)
|+++. ..+++++|+++.++|+++
T Consensus 374 Rls~~-~~~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 374 RLSVG-LEDPEDIINDLEHAIRKA 396 (398)
T ss_dssp EEECC-SSCHHHHHHHHHHHHHHH
T ss_pred EEEec-CCCHHHHHHHHHHHHHhh
Confidence 99995 577888999999888764
No 125
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.88 E-value=3.6e-21 Score=194.74 Aligned_cols=328 Identities=10% Similarity=0.017 Sum_probs=206.2
Q ss_pred CccceeCCCCCChHHHHHHHHHhcc-cccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHH
Q 010125 94 PNYFAYFPSSGSIAGFLGEMLSSGF-NIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILC 172 (517)
Q Consensus 94 p~~~~~~~~~~~~~~~~~~~l~~~~-n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~ 172 (517)
..|++.-. .+..+..+.+++.... ......|..++...++| +++++++|.+ ..++++|||+|+..
T Consensus 12 ~~~l~~~~-~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~----~~la~~~~~~---------~~i~~~~G~~a~~~ 77 (357)
T 3lws_A 12 TTGQISGH-GKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFE----QKFADVLGMD---------DAVFFPSGTMAQQV 77 (357)
T ss_dssp CSEESSBS-SCCBHHHHHHHHTTSCTTCBCEETTEETTHHHHH----HHHHHHHTCS---------EEEEESCHHHHHHH
T ss_pred hcccccCC-CCCCHHHHHHHHHHhhcccCcccccCChHHHHHH----HHHHHHhCCC---------cEEEecCcHHHHHH
Confidence 34666554 3555666666665432 11223455556666665 5666777764 34777889999998
Q ss_pred HHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHH---HHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCC
Q 010125 173 TLTAARDRVLNKIGRENISKLIVYGSDQTHCALQK---AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGL 249 (517)
Q Consensus 173 al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~k---aa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~ 249 (517)
++.+.... | .+.+|+++...|++... .+...|+ +++.+|.+ ++.+|+++|+++.+
T Consensus 78 al~~~~~~-----g----d~~~vi~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~---~~~~d~~~l~~~~~------- 135 (357)
T 3lws_A 78 ALRIWSDE-----T----DNRTVAYHPLCHLEIHEQDGLKELHPI---ETILVGAA---DRLMTLDEIKALPD------- 135 (357)
T ss_dssp HHHHHHHH-----H----TCCEEEECTTCHHHHSSTTHHHHHSSC---EEEECSCT---TSCCCHHHHHTCCS-------
T ss_pred HHHHHhhc-----C----CCcEEEecccceeeeeccchhhhccCc---EEEEecCC---CCCcCHHHHhcCcC-------
Confidence 88776653 1 12278888889988765 3456677 78877743 46899999998721
Q ss_pred cceEEEeeccCCcc-ccccC---hhHHHHHHHHhCCeEEccccccccccc--CccccccccCCCCCCeeeeccccccCCC
Q 010125 250 IPLFLCATIGTTAI-TAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACI--CPEFRHFIDGVEGADSFSLNAHKWFFAT 323 (517)
Q Consensus 250 ~p~~vv~t~gtt~~-G~idp---l~eI~~i~~~~gi~lhvDaA~g~~~~~--~~~~~~~~~g~~~aDsi~~~~hK~l~~p 323 (517)
+.+|+++.+++++ |.+.| +++|+++|++||+|+|+|+||+..... ........ ..+|+++.++||++++|
T Consensus 136 -~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~---~~~d~~~~s~sK~~~~~ 211 (357)
T 3lws_A 136 -IACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA---GLFDSIYISFYKGLGGI 211 (357)
T ss_dssp -CSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH---TTSSEEEEESSSTTCCS
T ss_pred -cceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH---hcCCEEEEeccccCCCC
Confidence 2378888888887 88765 899999999999999999998622111 11111111 36789999999999888
Q ss_pred CcceEEEEeCchhHHhhhcCCccccCCccccccccccCCCccccCCCCCC--chHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 010125 324 LDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFR--SLKLWFVIRNYGVANLRHFLRSHVNMAK 401 (517)
Q Consensus 324 ~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~--al~~~~~l~~~g~~g~~~~i~~~~~~a~ 401 (517)
.+ |+++. +++......... ..+... .+... +.....+++. +.+.+++..++++
T Consensus 212 ~g-g~~~~-~~~~~~~~~~~~-~~~~~~-----------------~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~ 266 (357)
T 3lws_A 212 AG-AILAG-PAAFCQTARIWK-RRYGGD-----------------LISLYPYIVSADYYYEL-----RKDRMGQYYEQAK 266 (357)
T ss_dssp SC-EEEEE-CHHHHHHHHHHH-HHTTCC-----------------CSCCHHHHHHHHHHHHH-----HTTCHHHHHHHHH
T ss_pred ce-EEEEc-CHHHHHHHHHHH-HHhcCC-----------------cccchHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 76 66554 444332211100 000000 00001 1111122222 3344556678899
Q ss_pred HHHHHHhcCCCeEEe-cCCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeE-CC
Q 010125 402 LFERLVSGDKRFEIV-FPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVL-GG 479 (517)
Q Consensus 402 ~l~~~l~~~~~~~l~-~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-~g 479 (517)
++.+.|+++|++++. .++..+++.+++.... .....++.+.|.++|++...+... .+
T Consensus 267 ~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~l~~~Gi~v~~g~~~~~~ 325 (357)
T 3lws_A 267 QLAEQFNALPGVHTTPEVPVSNMFHLHFDGQA---------------------ADISPKLEQVQEETGLGFVGYLVDKDG 325 (357)
T ss_dssp HHHHHHHTSTTEEEESSSCSSSEEEEEEESCH---------------------HHHHHHHHHHHHHHCEESCSCCEECSS
T ss_pred HHHHHHHhCCCCeeccCCCcceEEEEEecCCh---------------------HHHHHHHHHHHHhcCeEEecccccCCC
Confidence 999999999999984 4667788888775431 122356677777888754433222 46
Q ss_pred EeEEEEEecCCC--CcHHHHHHHHHHHHHH
Q 010125 480 IYAIRFATGATL--TEKRHVVVAWTVVQQH 507 (517)
Q Consensus 480 ~~~lR~~~~~~~--t~~~di~~l~~~l~~~ 507 (517)
..++|+++.... .+.++++++++.|.+.
T Consensus 326 ~~~~r~~i~~~~~~~~~~~l~~al~~l~~a 355 (357)
T 3lws_A 326 YCSTEISVGDAYGELDQQTRDAGFARLRQA 355 (357)
T ss_dssp EEEEEEEBCTTGGGSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEecchhhhcCHHHHHHHHHHHHHh
Confidence 779999986433 5777888888887664
No 126
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.88 E-value=1.9e-21 Score=199.77 Aligned_cols=330 Identities=14% Similarity=0.071 Sum_probs=202.0
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHH
Q 010125 128 SPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQK 207 (517)
Q Consensus 128 sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~k 207 (517)
++...++++.+. +++|.+ .+++++|||+|+..++.+.+- .+++.|+++..+|.++..
T Consensus 31 g~~~~~l~~~la----~~~~~~---------~v~~~~ggt~al~~~~~~l~~----------~~gd~Vl~~~~~~~~~~~ 87 (394)
T 1o69_A 31 GEFVNRFEQSVK----DYSKSE---------NALALNSATAALHLALRVAGV----------KQDDIVLASSFTFIASVA 87 (394)
T ss_dssp THHHHHHHHHHH----HHHCCS---------EEEEESCHHHHHHHHHHHTTC----------CTTCEEEEESSSCGGGTH
T ss_pred ChHHHHHHHHHH----HHhCCC---------cEEEeCCHHHHHHHHHHHcCC----------CCCCEEEECCCccHHHHH
Confidence 344566665555 445542 589999999999888876521 155678889999999999
Q ss_pred HHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEccc
Q 010125 208 AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDA 287 (517)
Q Consensus 208 aa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDa 287 (517)
+++..|+ +++.+|++. ++.+|+++|+++|++.. ..+.+|+++. ++|...|+++|.++|++||+++|+|+
T Consensus 88 ~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~i~~~~---~~~~~v~~~~---~~G~~~~l~~i~~l~~~~~~~li~De 156 (394)
T 1o69_A 88 PICYLKA---KPVFIDCDE--TYNIDVDLLKLAIKECE---KKPKALILTH---LYGNAAKMDEIVEICKENDIVLIEDA 156 (394)
T ss_dssp HHHHTTC---EEEEECBCT--TSSBCHHHHHHHHHHCS---SCCCEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHcCC---EEEEEEeCC--CCCcCHHHHHHHHhccc---CCceEEEEEC---CCCChhhHHHHHHHHHHcCCEEEEEC
Confidence 9999999 999999873 67999999999997621 0123566553 78999999999999999999999999
Q ss_pred ccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCccccCCccccccccccCCCcccc
Q 010125 288 AYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQIT 367 (517)
Q Consensus 288 A~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~ 367 (517)
||+.+...... . ...+..+|.++++.||+++ |.++|+++++++............+.... ..+ ...+
T Consensus 157 a~~~g~~~~~~--~-~~~~~~~~~~s~s~~K~l~-~~~~G~~~~~~~~l~~~l~~~~~~~~~~~-------~~~--~~~~ 223 (394)
T 1o69_A 157 AEALGSFYKNK--A-LGTFGEFGVYSYNGNKIIT-TSGGGMLIGKNKEKIEKARFYSTQARENC-------LHY--EHLD 223 (394)
T ss_dssp TTCTTCEETTE--E-TTSSSSEEEEECCTTSSSC-CSSCEEEEESCHHHHHHHHHHTBTCCCSS-------SSC--CCSS
T ss_pred cCcccceeCCc--c-cccccCcEEEEEeCCccCC-CCCceEEEECCHHHHHHHHHHHHhccccC-------ccc--cccc
Confidence 99843332211 1 1112368899999999886 66899999876554322211111111000 000 0112
Q ss_pred CCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-----CeeEEEEEecCCCcchhhhhhhh
Q 010125 368 LSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPC-----HFAVVCFRVSPSPVLMDKLKTKY 442 (517)
Q Consensus 368 ~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~-----~~~~v~f~~~~~~~~~~~~~~~~ 442 (517)
.+.+++...+.+++.....+.+++++++..++++++.+.|++. +++..++ .+.+++|++.+... ......++
T Consensus 224 ~g~~~~~~~~~aa~~l~~l~~l~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~ 300 (394)
T 1o69_A 224 YGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGEY--FSFLDELENSRSNRWLSTALINFDKN-ELNACQKD 300 (394)
T ss_dssp CCCBCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTT--EECCCCCTTEECCCSSEEEEESCCGG-GSCCCCEE
T ss_pred cCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--ccccCCCCCCcceeEEEEEEecchhh-cccccccc
Confidence 2333333333333322223557788899999999999999886 6665432 22256777653200 00000000
Q ss_pred hccccchHHHHHHHHHHHHHHHHhcCcEEEeee-------eECC----E---------eEEEEEecCCCCcHHHHHHHHH
Q 010125 443 VNCLLSEEEQINEFNRELLESINASGKAYMTHA-------VLGG----I---------YAIRFATGATLTEKRHVVVAWT 502 (517)
Q Consensus 443 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-------~~~g----~---------~~lR~~~~~~~t~~~di~~l~~ 502 (517)
.+....+ ...+....++.+.|.++|+...+.. .+.. . ..+|+.. ++.++++|++++++
T Consensus 301 ~~~~~~~-~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~edi~~~~~ 378 (394)
T 1o69_A 301 INISQKN-ITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPS-GTAMSKDDVYEISK 378 (394)
T ss_dssp EECCCCC-CCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECC-CTTCCHHHHHHHHH
T ss_pred ccccccc-cccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccC-CCCCCHHHHHHHHH
Confidence 0000000 0000123567777777786432221 1111 0 3455554 68889999999999
Q ss_pred HHHHHHH
Q 010125 503 VVQQHLE 509 (517)
Q Consensus 503 ~l~~~~~ 509 (517)
+|+++.+
T Consensus 379 ~l~~~~~ 385 (394)
T 1o69_A 379 LILKSIK 385 (394)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9988754
No 127
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.88 E-value=3.3e-22 Score=202.42 Aligned_cols=334 Identities=13% Similarity=0.034 Sum_probs=211.2
Q ss_pred CCCCChHHHHHHHHHhcccc----ccccccc---ChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCc-hHHHHH
Q 010125 101 PSSGSIAGFLGEMLSSGFNI----VGFNWIS---SPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTT-CEAILC 172 (517)
Q Consensus 101 ~~~~~~~~~~~~~l~~~~n~----~~~~~~~---sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~gg-t~a~~~ 172 (517)
+++..+|..+.+.+...+.. ....|.. ++....+.+++++++++++|.++. ..+++|+|+ |+|+..
T Consensus 9 ~g~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~------~~v~~~~g~gt~al~~ 82 (360)
T 1w23_A 9 AGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPND------YQILFLQGGASLQFTM 82 (360)
T ss_dssp SSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTT------EEEEEESSHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCC------ceEEEECCcchHHHHH
Confidence 33444455566666655532 2223333 667777888899999999999632 168889888 899887
Q ss_pred HHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHH-HHHHhHhcCCcc
Q 010125 173 TLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMA-QINSDVEVGLIP 251 (517)
Q Consensus 173 al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~-~i~~~~~~g~~p 251 (517)
++.+.... | .++++|+++..+|++... ++.. | +++.+|++++ ++.+|+++|++ +++++ +
T Consensus 83 ~~~~l~~~-----~---~~g~~vi~~~~~~~~~~~-~~~~--g--~~~~v~~~~~-~~~~d~~~l~~~~i~~~------~ 142 (360)
T 1w23_A 83 LPMNLLTK-----G---TIGNYVLTGSWSEKALKE-AKLL--G--ETHIAASTKA-NSYQSIPDFSEFQLNEN------D 142 (360)
T ss_dssp HHHHHCCT-----T---CEEEEEECSHHHHHHHHH-HHTT--S--EEEEEEECGG-GTSCSCCCGGGCCCCTT------E
T ss_pred HHHHhcCC-----C---CcccEEEecchhHHHHHH-HHHh--C--CeEEeecccc-cCcCCccchHhhccCCC------C
Confidence 76654321 1 145678888888887433 3333 4 6888998742 34689999988 77543 3
Q ss_pred eEEEeeccCCccccccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEE
Q 010125 252 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWV 331 (517)
Q Consensus 252 ~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~ 331 (517)
.+|++++++|++|.+-| +| +++||+++++|++|+.+....+ +...|+++.++||+++ |.|+|++++
T Consensus 143 k~v~~~~~~nptG~~~~--~i---~~~~~~~li~D~a~~~~~~~~~--------~~~~di~~~s~sK~~~-~~G~G~~~~ 208 (360)
T 1w23_A 143 AYLHITSNNTIYGTQYQ--NF---PEINHAPLIADMSSDILSRPLK--------VNQFGMIYAGAQKNLG-PSGVTVVIV 208 (360)
T ss_dssp EEEEEESEETTTTEECS--SC---CCCCSSCEEEECTTTTTSSCCC--------GGGCSEEEEETTTTTS-CTTCEEEEE
T ss_pred CEEEEeCCCCCcceecc--cc---cccCCceEEEechhhcCCCCcC--------cccCCEEEEEcccccC-CCCcEEEEE
Confidence 47888899999999854 22 2389999999999987654321 1123899999999987 668999998
Q ss_pred eCchhHHhhhcC-CccccCCccccccccccCCCccccCCCC-CCchHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHh
Q 010125 332 KDPRALVSSLST-NPEYLKNKATESMQVVDYKDWQITLSRR-FRSLKLWFVIRNYGVA-NLRHFLRSHVNMAKLFERLVS 408 (517)
Q Consensus 332 ~~~~~~~~~~~~-~~~yl~~~~~~~~~~~~~~~~~~~~sr~-~~al~~~~~l~~~g~~-g~~~~i~~~~~~a~~l~~~l~ 408 (517)
+++. . +.+.. .+.++..... .. ..+.. .+.. .....+..+++.+..+ +++++.++..++++++.+.|+
T Consensus 209 ~~~~-~-~~~~~~~~~~~~~~~~-----~~-~~~~~-~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 279 (360)
T 1w23_A 209 KKDL-L-NTKVEQVPTMLQYATH-----IK-SDSLY-NTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTID 279 (360)
T ss_dssp EHHH-H-CSCCTTCCGGGCHHHH-----HH-TTTCS-SCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHH-H-hhcccCCcchhhhhhh-----hh-ccCCC-CCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 7542 2 22211 1111100000 00 00000 1111 1113444556555444 788899999999999999999
Q ss_pred cCCCe-EEecCC--Cee-EEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEE
Q 010125 409 GDKRF-EIVFPC--HFA-VVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIR 484 (517)
Q Consensus 409 ~~~~~-~l~~~~--~~~-~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR 484 (517)
+++++ ....++ ..+ +++|++... ....++.+.|.+.|+.+..... ...++|
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~l~~~gi~~~~~~~--~~~~iR 334 (360)
T 1w23_A 280 ESNGFYVGHAEKGSRSLMNVTFNLRNE-----------------------ELNQQFLAKAKEQGFVGLNGHR--SVGGCR 334 (360)
T ss_dssp TTTTSSEESSCGGGBCSSEEEEECSSH-----------------------HHHHHHHHHHHHTTEESCBCCT--TTCSEE
T ss_pred HccCcccccCCchhccCcEEEEEcCCC-----------------------ccHHHHHHHHHHCCeeeecCCC--CCCeEE
Confidence 98765 654222 334 677776321 1234567777778875433221 135899
Q ss_pred EEecCCCCcHHHHHHHHHHHHHHHH
Q 010125 485 FATGATLTEKRHVVVAWTVVQQHLE 509 (517)
Q Consensus 485 ~~~~~~~t~~~di~~l~~~l~~~~~ 509 (517)
+++. ..++++++++++++|+++.+
T Consensus 335 is~~-~~~~~~~i~~~~~~l~~~~~ 358 (360)
T 1w23_A 335 ASIY-NAVPIDACIALRELMIQFKE 358 (360)
T ss_dssp EECC-TTSCHHHHHHHHHHHHHHHH
T ss_pred EEec-CCCCHHHHHHHHHHHHHHHh
Confidence 9985 56688899999999988764
No 128
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.88 E-value=6.5e-22 Score=203.96 Aligned_cols=342 Identities=11% Similarity=0.007 Sum_probs=218.1
Q ss_pred hHHHHHHHHHhccccc-ccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHH
Q 010125 106 IAGFLGEMLSSGFNIV-GFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNK 184 (517)
Q Consensus 106 ~~~~~~~~l~~~~n~~-~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~ 184 (517)
++..+.+.+...+... ...|....+..++++.+.+|+.+.+|.+... ....++|+||++|+..++.+..+
T Consensus 37 ~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~----~~~i~~~~g~~~a~~~~~~~~~~----- 107 (410)
T 3e2y_A 37 PPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDP----NEEILVAVGAYGSLFNSIQGLVD----- 107 (410)
T ss_dssp CCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCT----TTSEEEESHHHHHHHHHHHHHCC-----
T ss_pred CCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCC----CCCEEEeCCcHHHHHHHHHHhcC-----
Confidence 3445555565555432 3356555567899999999999998875321 02689999999999888776532
Q ss_pred hcccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCC---------CCCcccCHHHHHHHHHHhHhcCCcceEEE
Q 010125 185 IGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTK---------SSSYGLSPDSLMAQINSDVEVGLIPLFLC 255 (517)
Q Consensus 185 ~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~---------~~~~~~d~~~Le~~i~~~~~~g~~p~~vv 255 (517)
++..|++..++|.++...++..|. +++.+|++. ..++.+|+++|++++++++ .+|+
T Consensus 108 ------~gd~vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~~~------~~v~ 172 (410)
T 3e2y_A 108 ------PGDEVIIMVPFYDCYEPMVRMAGA---VPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKT------KAII 172 (410)
T ss_dssp ------TTCEEEEEESCCTTHHHHHHHTTC---EEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCTTE------EEEE
T ss_pred ------CCCEEEEeCCCchhhHHHHHHcCC---EEEEEeccccccccccccccCCcCCHHHHHhhcCCCc------eEEE
Confidence 456688888999999999999999 999999862 1356799999999886533 4778
Q ss_pred eeccCCccccc---cChhHHHHHHHHhCCeEEcccccccccccCccccccc--cCCCCCCeeeeccccccC-CCCcceEE
Q 010125 256 ATIGTTAITAV---DPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFI--DGVEGADSFSLNAHKWFF-ATLDCCCL 329 (517)
Q Consensus 256 ~t~gtt~~G~i---dpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~--~g~~~aDsi~~~~hK~l~-~p~~~g~l 329 (517)
++.+++++|.+ +++++|+++|++||+++|+|++|+.+........... ......+.+..+++|+++ .+..+|++
T Consensus 173 ~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~ 252 (410)
T 3e2y_A 173 LNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGWKLGWS 252 (410)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGGCCEEE
T ss_pred EeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCCceEEEE
Confidence 88999999999 6799999999999999999999987654321111111 111133467778999997 55778888
Q ss_pred EEeCchhHHhhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHH------hcHHHHHHHHHHHHHHHHHH
Q 010125 330 WVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRN------YGVANLRHFLRSHVNMAKLF 403 (517)
Q Consensus 330 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~------~g~~g~~~~i~~~~~~a~~l 403 (517)
+.+++ .. +.+....... .+ .........+..+++. ...+.++++.++..++++++
T Consensus 253 ~~~~~-~~-~~~~~~~~~~--------------~~---~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 313 (410)
T 3e2y_A 253 IGPAH-LI-KHLQTVQQNS--------------FY---TCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRM 313 (410)
T ss_dssp ECCHH-HH-HHHHHHHHTT--------------TC---CCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHH
T ss_pred EECHH-HH-HHHHHHHHhh--------------cc---CCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHH
Confidence 77543 22 2221000000 00 0001111222233331 12456788888899999999
Q ss_pred HHHHhcCCCeEEecCCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHH-HhcCcEEEeeeeEC----
Q 010125 404 ERLVSGDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESI-NASGKAYMTHAVLG---- 478 (517)
Q Consensus 404 ~~~l~~~~~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~g~~~~~~~~~~---- 478 (517)
.+.|++. ++++..+....++.+.+..... .. +...... ....++.+++ .+.|+...++..+.
T Consensus 314 ~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~----~~~~~~~~~ll~~~gv~v~~g~~f~~~~~ 380 (410)
T 3e2y_A 314 VRLLNSV-GLKPIVPDGGYFIIADVSSLGA-DL-------SDMNSDE----PYDYKFVKWMTKHKKLTAIPVSAFCDSKS 380 (410)
T ss_dssp HHHHHTT-TCEEEBCSBSSEEEEECGGGCC-CC-------TTCCSSC----CHHHHHHHHHHHHHSEECEEGGGGSCTTT
T ss_pred HHHHHHC-CCeecCCCccEEEEEEchhhhc-cc-------ccccccc----cCHHHHHHHHHHHcCEEEeCchhhCCCCC
Confidence 9999988 8887654444444454432100 00 0000000 0012344443 35576554444332
Q ss_pred ---CEeEEEEEecCCCCcHHHHHHHHHHHHH
Q 010125 479 ---GIYAIRFATGATLTEKRHVVVAWTVVQQ 506 (517)
Q Consensus 479 ---g~~~lR~~~~~~~t~~~di~~l~~~l~~ 506 (517)
+..++|++++. ++++|++++++|++
T Consensus 381 ~~~~~~~iRis~~~---~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 381 KPHFEKLVRFCFIK---KDSTLDAAEEIFRA 408 (410)
T ss_dssp HHHHTTEEEEECCC---CHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEEEcC---CHHHHHHHHHHHHh
Confidence 24789999853 88899999998865
No 129
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.88 E-value=4.1e-21 Score=199.55 Aligned_cols=316 Identities=10% Similarity=0.051 Sum_probs=211.1
Q ss_pred ccccccChhhHHHHHHHHHHHHHHc-CCCcccccCCCCc---eEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEe
Q 010125 122 GFNWISSPAATELENIVMDWLGQML-KLPKSFLFSGNGG---GVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYG 197 (517)
Q Consensus 122 ~~~~~~sp~~~~lE~~v~~~l~~l~-g~~~~~~~~~~~~---g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~ 197 (517)
...|....+..++++.+.+|+.+.. +.+++ . .++|+|||+|+..++.+..+ +++.|++
T Consensus 81 ~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~-------~~~~i~~t~g~~~al~~~~~~l~~-----------~gd~Vl~ 142 (430)
T 2x5f_A 81 IFPYAPPQGIEELRDLWQQKMLRDNPELSID-------NMSRPIVTNALTHGLSLVGDLFVN-----------QDDTILL 142 (430)
T ss_dssp TSSCCCTTCCHHHHHHHHHHHHHHCTTCCGG-------GBCCCEEESHHHHHHHHHHHHHCC-----------TTCEEEE
T ss_pred ccccCCCCCCHHHHHHHHHHHhccCcccCCC-------ccceEEEcCCchHHHHHHHHHHhC-----------CCCEEEE
Confidence 3456555568889999999987764 33332 5 89999999999888776532 4567888
Q ss_pred CCCCchHHHHHHHH-cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccC---hhHHH
Q 010125 198 SDQTHCALQKAAQI-VGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDP---LKPLC 273 (517)
Q Consensus 198 s~~~H~s~~kaa~~-~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idp---l~eI~ 273 (517)
.+++|.++..+++. .|+ +++.+|++.+ ++.+|+++|++++++. +..+.+|+++.++|++|.+-| +++|+
T Consensus 143 ~~p~y~~~~~~~~~~~g~---~~~~~~~~~~-~~~~d~~~l~~~l~~~---~~~~~~v~i~~p~nptG~~~~~~~l~~i~ 215 (430)
T 2x5f_A 143 PEHNWGNYKLVFNTRNGA---NLQTYPIFDK-DGHYTTDSLVEALQSY---NKDKVIMILNYPNNPTGYTPTHKEVTTIV 215 (430)
T ss_dssp ESSCCTHHHHHHTTTTCC---EEEEECCBCT-TSCBCSHHHHHHHHHC---CSSEEEEEECSSCTTTCCCCCHHHHHHHH
T ss_pred cCCcCccHHHHHHHhcCC---eEEEEeccCc-cCCcCHHHHHHHHHhc---CCCCEEEEEcCCCCCCCCcCCHHHHHHHH
Confidence 88999999999998 999 9999998753 3689999999999762 112447788889999999988 89999
Q ss_pred HHHHH-----hCCeEEcccccccccccCccccc---cccCCCCC---CeeeeccccccCCC-CcceEEEE--eCchhHHh
Q 010125 274 DVAKQ-----FGIWVHVDAAYAGSACICPEFRH---FIDGVEGA---DSFSLNAHKWFFAT-LDCCCLWV--KDPRALVS 339 (517)
Q Consensus 274 ~i~~~-----~gi~lhvDaA~g~~~~~~~~~~~---~~~g~~~a---Dsi~~~~hK~l~~p-~~~g~l~~--~~~~~~~~ 339 (517)
++|++ ||+++++|++|+.+......... .+.+.... +.+..++||+++.| ..+|++++ +++... +
T Consensus 216 ~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~-~ 294 (430)
T 2x5f_A 216 EAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTK-E 294 (430)
T ss_dssp HHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHHH-H
T ss_pred HHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCCCCCCCeEEEEEecCCHHHH-H
Confidence 99999 99999999999876543211111 12222233 56688899999744 55799888 234332 2
Q ss_pred hhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhc-----HHHHHHHHHHHHHHHHHHHHHHh----cC
Q 010125 340 SLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYG-----VANLRHFLRSHVNMAKLFERLVS----GD 410 (517)
Q Consensus 340 ~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g-----~~g~~~~i~~~~~~a~~l~~~l~----~~ 410 (517)
.+.......... .......+..+++...+. .+.++++.++..++++++.+.|+ +.
T Consensus 295 ~l~~~~~~~~~~----------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 358 (430)
T 2x5f_A 295 VLEAKVKGLIRS----------------NISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHS 358 (430)
T ss_dssp HHHHHHHHHHHT----------------TTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTT
T ss_pred HHHHHHhhhhhc----------------ccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 221100000000 000112333343333332 12233377778888999999998 44
Q ss_pred CCeEEecCCCeeE-EEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHh-cCcEEEeeeeECCEeEEEEEec
Q 010125 411 KRFEIVFPCHFAV-VCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINA-SGKAYMTHAVLGGIYAIRFATG 488 (517)
Q Consensus 411 ~~~~l~~~~~~~~-v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~g~~~lR~~~~ 488 (517)
++++. ++..++ +++.+.+.. ..++.++|.+ .|+.+.++ +..++|++++
T Consensus 359 -g~~~~-~~~~g~~~~~~~~~~~------------------------~~~~~~~l~~~~gi~v~~g----~~~~iRis~~ 408 (430)
T 2x5f_A 359 -HWQAY-DFNSGYFMAIKVHDVD------------------------PEALRKHLIDKYSIGVIAL----NATDIRIAFS 408 (430)
T ss_dssp -TEEEC-CCCBSSEEEEEESSSC------------------------HHHHHHHHHHHHCEECEEC----SSSEEEEEGG
T ss_pred -Cceee-CCCceEEEEeCCCCCC------------------------HHHHHHHHHHhCCEEEecC----CCCeEEEEEe
Confidence 78775 455444 556664210 2456667766 78654332 4568999996
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHH
Q 010125 489 ATLTEKRHVVVAWTVVQQHLEAF 511 (517)
Q Consensus 489 ~~~t~~~di~~l~~~l~~~~~~l 511 (517)
. ++++++++++++|.++.+++
T Consensus 409 ~--~~~e~i~~~~~~l~~~l~~~ 429 (430)
T 2x5f_A 409 C--VEKDDIPHVFDSIAKAIDDL 429 (430)
T ss_dssp G--SCGGGHHHHHHHHHHHHHHH
T ss_pred c--CCHHHHHHHHHHHHHHHHhc
Confidence 3 47779999999999887654
No 130
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.88 E-value=6.2e-21 Score=196.72 Aligned_cols=281 Identities=14% Similarity=0.141 Sum_probs=192.7
Q ss_pred HHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHH----HHHHc
Q 010125 137 IVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQK----AAQIV 212 (517)
Q Consensus 137 ~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~k----aa~~~ 212 (517)
++.+++++++|.+ ..++++||++|+..++.+..+ +++.|+++.+.|.++.. .++..
T Consensus 66 ~l~~~ia~~~g~~---------~~i~~~~g~~ai~~~~~~l~~-----------~gd~Vl~~~~~y~~~~~~~~~~~~~~ 125 (404)
T 1e5e_A 66 NLEGKIAFLEKTE---------ACVATSSGMGAIAATVLTILK-----------AGDHLISDECLYGCTHALFEHALTKF 125 (404)
T ss_dssp HHHHHHHHHHTCS---------EEEEESSHHHHHHHHHHHHCC-----------TTCEEEEESCCCHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHhCCC---------cEEEeCChHHHHHHHHHHHhC-----------CCCEEEEeCCCchhHHHHHHHHHHHc
Confidence 3445566666764 357788889998877765422 55678888999999888 78888
Q ss_pred CCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHH-hCCeEEccccccc
Q 010125 213 GIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQ-FGIWVHVDAAYAG 291 (517)
Q Consensus 213 G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~-~gi~lhvDaA~g~ 291 (517)
|+ +++.+|++ |+++|+++|++++ .+|+++.++|++|.+.|+++|+++|++ ||+++++|++|+.
T Consensus 126 g~---~~~~v~~~-------d~~~l~~~i~~~t------~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~ 189 (404)
T 1e5e_A 126 GI---QVDFINTA-------IPGEVKKHMKPNT------KIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCS 189 (404)
T ss_dssp TC---EEEEECTT-------STTHHHHHCCTTE------EEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTC
T ss_pred CC---EEEEECCC-------CHHHHHHhcCCCC------cEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCch
Confidence 99 99999864 7789999887543 478889999999999999999999999 9999999999987
Q ss_pred ccccCccccccccCCCCCCeeeeccccccCCCCc--ceEEEEeCchhHHhhhcCCccccCCccccccccccCCCccccCC
Q 010125 292 SACICPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLS 369 (517)
Q Consensus 292 ~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~--~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~s 369 (517)
+....+. . .++|+++.++||+++.|.+ +|+++++++. +.+.+.....++. +
T Consensus 190 ~~~~~~~--~-----~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~-~~~~l~~~~~~~~-------------------g 242 (404)
T 1e5e_A 190 PMITNPV--D-----FGVDVVVHSATKYINGHTDVVAGLICGKADL-LQQIRMVGIKDIT-------------------G 242 (404)
T ss_dssp TTTCCGG--G-----GTCSEEEEETTTTTTCSSCCCCEEEEECHHH-HHHHHHTCCCCCC-------------------C
T ss_pred hhhCCcc--c-----cCCEEEEEcCccccCCCCCCeEEEEEECHHH-HHHHHHHHHHhCC-------------------C
Confidence 7643221 1 1689999999999998866 6888876543 2212221111110 0
Q ss_pred CCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeE-EecC------------C----CeeEEEEEecCCC
Q 010125 370 RRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFE-IVFP------------C----HFAVVCFRVSPSP 432 (517)
Q Consensus 370 r~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~-l~~~------------~----~~~~v~f~~~~~~ 432 (517)
.....+..|++++.+. .+..++++..++++.+.+.+++.+.++ ++.+ + ..++++|.+...
T Consensus 243 ~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~- 319 (404)
T 1e5e_A 243 SVISPHDAWLITRGLS--TLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSG- 319 (404)
T ss_dssp CCCCHHHHHHHHHHHT--THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTH-
T ss_pred CCCCHHHHHHHHHhHh--HHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCCC-
Confidence 1123456676666553 356677778888999989998876553 2211 1 267888866421
Q ss_pred cchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeE-------------------------CC--EeEEEE
Q 010125 433 VLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVL-------------------------GG--IYAIRF 485 (517)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-------------------------~g--~~~lR~ 485 (517)
...+.+.+.+.|. +.....+ .| ..++|+
T Consensus 320 ------------------------~~~~~~~l~~~~i-~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRi 374 (404)
T 1e5e_A 320 ------------------------FEGAKKLLDNLKL-ITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRL 374 (404)
T ss_dssp ------------------------HHHHHHHHHTCSS-SEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEE
T ss_pred ------------------------HHHHHHHHHhCCC-ceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEE
Confidence 1223334445565 2222111 12 468999
Q ss_pred EecCCCCcHHHHHHHHHHHHHHHHHHHh
Q 010125 486 ATGATLTEKRHVVVAWTVVQQHLEAFQS 513 (517)
Q Consensus 486 ~~~~~~t~~~di~~l~~~l~~~~~~l~~ 513 (517)
++.. ++++++++.|+++.+.+.+
T Consensus 375 s~g~-----e~~~~li~~l~~al~~~~~ 397 (404)
T 1e5e_A 375 SVGI-----EDADELIADFKQGLDALLR 397 (404)
T ss_dssp ECCS-----SCHHHHHHHHHHHHHHHHC
T ss_pred EeCC-----CCHHHHHHHHHHHHHHHHH
Confidence 9853 6899999999998887765
No 131
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.88 E-value=1.4e-20 Score=195.20 Aligned_cols=327 Identities=12% Similarity=0.042 Sum_probs=208.9
Q ss_pred HHHHHHHHHhccccccccccc-ChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHh
Q 010125 107 AGFLGEMLSSGFNIVGFNWIS-SPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKI 185 (517)
Q Consensus 107 ~~~~~~~l~~~~n~~~~~~~~-sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~ 185 (517)
|..+.+.+...+... .|.. ++...++++.+.+| +|.+ .+++|+|||+|+..++.+..
T Consensus 31 p~~~~~a~~~~~~~~--~y~~~~~~~~~l~~~la~~----~~~~---------~v~~~~ggt~al~~~l~~l~------- 88 (424)
T 2po3_A 31 RARLYERLDRALDSQ--WLSNGGPLVREFEERVAGL----AGVR---------HAVATCNATAGLQLLAHAAG------- 88 (424)
T ss_dssp HHHHHHHHHHHHHHT--CCSSSCHHHHHHHHHHHHH----HTSS---------EEEEESCHHHHHHHHHHHHT-------
T ss_pred hHHHHHHHHHHHhcC--CcccCCHHHHHHHHHHHHH----hCCC---------eEEEeCCHHHHHHHHHHHcC-------
Confidence 445556666555432 3544 56666677665555 4543 57999999999988887652
Q ss_pred cccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcccc
Q 010125 186 GRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITA 265 (517)
Q Consensus 186 g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~ 265 (517)
+++.|++++.+|.++..+++..|+ +++.+|+++ +++.+|+++|+++|++++ .+|+++ +++|.
T Consensus 89 -----~gd~Vlv~~~~~~~~~~~~~~~G~---~~~~v~~~~-~~~~~d~~~l~~~i~~~~------~~v~~~---~~tG~ 150 (424)
T 2po3_A 89 -----LTGEVIMPSMTFAATPHALRWIGL---TPVFADIDP-DTGNLDPDQVAAAVTPRT------SAVVGV---HLWGR 150 (424)
T ss_dssp -----CCSEEEEESSSCTHHHHHHHHTTC---EEEEECBCT-TTSSBCHHHHGGGCCTTE------EEEEEE---CGGGC
T ss_pred -----CCCEEEECCCccHHHHHHHHHcCC---EEEEEecCC-CcCCcCHHHHHHhhCcCC------cEEEEE---CCCCC
Confidence 235688889999999999999999 999999985 357899999999886533 355554 37899
Q ss_pred ccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccc--cccCCCCcceEEEEeCchhHHhhhcC
Q 010125 266 VDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAH--KWFFATLDCCCLWVKDPRALVSSLST 343 (517)
Q Consensus 266 idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~h--K~l~~p~~~g~l~~~~~~~~~~~~~~ 343 (517)
+.++++|+++|++||+++|+|++|+.+..... .. +. ...|.++.++| |+++. ..+|+++.++++.... +..
T Consensus 151 ~~~l~~i~~la~~~~~~li~Dea~~~g~~~~~--~~-~~--~~~di~~~S~sk~K~l~~-~~~G~~v~~~~~l~~~-l~~ 223 (424)
T 2po3_A 151 PCAADQLRKVADEHGLRLYFDAAHALGCAVDG--RP-AG--SLGDAEVFSFHATKAVNA-FEGGAVVTDDADLAAR-IRA 223 (424)
T ss_dssp CCCHHHHHHHHHHTTCEEEEECTTCTTCEETT--EE-TT--SSSSEEEEECCTTSSSCC-SSCEEEEESCHHHHHH-HHH
T ss_pred cCCHHHHHHHHHHcCCEEEEECccccCCeECC--ee-cc--cccCEEEEeCCCCCCccC-CCCeEEEeCCHHHHHH-HHH
Confidence 99999999999999999999999984332211 11 11 12477777766 88865 5678777765543322 211
Q ss_pred CccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCC---
Q 010125 344 NPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCH--- 420 (517)
Q Consensus 344 ~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~--- 420 (517)
...+.... .+... ......++..+..+.++. ..++++++.++..++++++.+.|+++|++++..++.
T Consensus 224 ~~~~~~~~------~~~~~--~~g~~~~~~~~~aa~~l~--~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~ 293 (424)
T 2po3_A 224 LHNFGFDL------PGGSP--AGGTNAKMSEAAAAMGLT--SLDAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGL 293 (424)
T ss_dssp HHBTTTTC------TTCCT--TCCCBCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSC
T ss_pred HHhcCccc------ccccc--ccCcCCCcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCc
Confidence 00000000 00000 111222344555555554 346678888889999999999999988998875332
Q ss_pred --eeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeee--EC------C------Ee---
Q 010125 421 --FAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAV--LG------G------IY--- 481 (517)
Q Consensus 421 --~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~--~~------g------~~--- 481 (517)
+.++.+.+.+. ..+....++.+.|.+.|+....... .. + ..
T Consensus 294 ~~~~~~~i~~~~~--------------------~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r 353 (424)
T 2po3_A 294 NNHQYVIVEIDEA--------------------TTGIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTER 353 (424)
T ss_dssp CCCCCEEEEECHH--------------------HHSSCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHH
T ss_pred cccEEEEEEECCc--------------------cchhhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHH
Confidence 23455655320 0000124566677777864322110 00 0 11
Q ss_pred ----EEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 010125 482 ----AIRFATGATLTEKRHVVVAWTVVQQHLEAF 511 (517)
Q Consensus 482 ----~lR~~~~~~~t~~~di~~l~~~l~~~~~~l 511 (517)
.+|+++ +..++++|++++++.|+++.++.
T Consensus 354 ~~~~~l~l~~-~~~~t~e~i~~~~~~L~~~~~~~ 386 (424)
T 2po3_A 354 LAARVLSLPT-GTAIGDDDIRRVADLLRLCATRG 386 (424)
T ss_dssp HHTTEEEECC-STTCCHHHHHHHHHHHHHHHHHH
T ss_pred HhcCEEEeeC-CCCCCHHHHHHHHHHHHHHHhhh
Confidence 277765 56788999999999999887654
No 132
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.88 E-value=2.5e-21 Score=199.23 Aligned_cols=283 Identities=13% Similarity=0.072 Sum_probs=189.1
Q ss_pred HHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHH----
Q 010125 134 LENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAA---- 209 (517)
Q Consensus 134 lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa---- 209 (517)
...++.+.+++++|.+ ..+++++||+|+..++.++.. ++..|+++...|.++...+
T Consensus 66 ~~~~l~~~la~~~g~~---------~~i~~~sG~~a~~~~l~~~~~-----------~gd~vl~~~~~~~~~~~~~~~~~ 125 (398)
T 1gc0_A 66 TLNLLEARMASLEGGE---------AGLALASGMGAITSTLWTLLR-----------PGDEVLLGNTLYGCTFAFLHHGI 125 (398)
T ss_dssp HHHHHHHHHHHHHTCS---------EEEEESSHHHHHHHHHHHHCC-----------TTCEEEEESSCCSHHHHHHHHTG
T ss_pred HHHHHHHHHHHHhCCC---------cEEEECCHHHHHHHHHHHHhc-----------CCCEEEEeCCCchhHHHHHHHHH
Confidence 3344556677777765 347777779999888876632 4567888889999888776
Q ss_pred HHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEccccc
Q 010125 210 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAY 289 (517)
Q Consensus 210 ~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~ 289 (517)
...|+ +++.++.+ |+++|+++|++++ .+|+++.+++++|.+.|+++|+++|++||+++|+|++|
T Consensus 126 ~~~g~---~~~~~~~~-------d~~~l~~~i~~~~------~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~ 189 (398)
T 1gc0_A 126 GEFGV---KLRHVDMA-------DLQALEAAMTPAT------RVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTY 189 (398)
T ss_dssp GGGTC---EEEEECTT-------CHHHHHHHCCTTE------EEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTT
T ss_pred HHcCC---EEEEECCC-------CHHHHHHhcCCCC------eEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCC
Confidence 55677 88888752 8999999987543 47888999999999999999999999999999999999
Q ss_pred ccccccCccccccccCCCCCCeeeeccccccCCCCc--ceEEEEeCchhHHhhhcCCccccCCccccccccccCCCcccc
Q 010125 290 AGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQIT 367 (517)
Q Consensus 290 g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~--~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~ 367 (517)
+.+....+. . .++|+++.++||+++.|.+ +|+++++++. +...+.....++.
T Consensus 190 ~~~~~~~~~--~-----~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~-~~~~~~~~~~~~~------------------ 243 (398)
T 1gc0_A 190 CTPYLQRPL--E-----LGADLVVHSATKYLSGHGDITAGIVVGSQAL-VDRIRLQGLKDMT------------------ 243 (398)
T ss_dssp THHHHCCGG--G-----GTCSEEEEETTTTTTCSSSCCCEEEEECHHH-HHHHHHTHHHHHT------------------
T ss_pred cccccCCch--h-----hCceEEEECCccccCCCCCCeEEEEEEChHH-HHHHHHHHhhccC------------------
Confidence 877643321 1 2689999999999998866 6888776542 2211211111100
Q ss_pred CCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe--------------cC---CCeeEEEEEecC
Q 010125 368 LSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIV--------------FP---CHFAVVCFRVSP 430 (517)
Q Consensus 368 ~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~--------------~~---~~~~~v~f~~~~ 430 (517)
+-....+..|++++.+ +.+..++++..++++++.+.|++.+.++-+ .+ ...++++|.+.+
T Consensus 244 -~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 320 (398)
T 1gc0_A 244 -GAVLSPHDAALLMRGI--KTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG 320 (398)
T ss_dssp -CCCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETT
T ss_pred -CCCCCHHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECC
Confidence 0112345566665543 456677888888999999999887655421 11 145778887743
Q ss_pred CCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEe------------ee--e----------ECC--EeEEE
Q 010125 431 SPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMT------------HA--V----------LGG--IYAIR 484 (517)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~------------~~--~----------~~g--~~~lR 484 (517)
. . ....+.+.+.+..... +. . ..| ..++|
T Consensus 321 ~----------------------~---~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR 375 (398)
T 1gc0_A 321 G----------------------I---GAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVR 375 (398)
T ss_dssp H----------------------H---HHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEE
T ss_pred C----------------------H---HHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEE
Confidence 1 1 1222333333432211 10 0 011 36899
Q ss_pred EEecCCCCcHHHHHHHHHHHHHH
Q 010125 485 FATGATLTEKRHVVVAWTVVQQH 507 (517)
Q Consensus 485 ~~~~~~~t~~~di~~l~~~l~~~ 507 (517)
+|+. ..+++++|+.+.++|+++
T Consensus 376 is~g-~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 376 LSVG-LEDIDDLLADVQQALKAS 397 (398)
T ss_dssp EECC-SSCHHHHHHHHHHHHHHH
T ss_pred EEeC-cCCHHHHHHHHHHHHHhc
Confidence 9995 577888999999888764
No 133
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=99.88 E-value=6.8e-21 Score=195.40 Aligned_cols=328 Identities=10% Similarity=0.034 Sum_probs=212.2
Q ss_pred HHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCC-cccccCCCC-ceEEcCCchHHHHHHHHHHHHHHHHH
Q 010125 107 AGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLP-KSFLFSGNG-GGVIQGTTCEAILCTLTAARDRVLNK 184 (517)
Q Consensus 107 ~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~-~~~~~~~~~-~g~~t~ggt~a~~~al~~ar~~~~~~ 184 (517)
+..+.+.+...+. ....|....+..++++++.+|+.+.+|.+ .. .. ..++|+|+++|+..++.+.+..
T Consensus 45 ~~~v~~a~~~~~~-~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~-----~~~~i~~t~g~~~al~~~~~~~~~~---- 114 (396)
T 3jtx_A 45 PKVITDALTASLH-ELEKYPLTAGLPELRQACANWLKRRYDGLTVD-----ADNEILPVLGSREALFSFVQTVLNP---- 114 (396)
T ss_dssp CHHHHHHHHHTGG-GGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCC-----TTTSEEEESSHHHHHHHHHHHHCCC----
T ss_pred CHHHHHHHHHHhh-hccCCCCCCCcHHHHHHHHHHHHHhcCCCCCC-----CCCeEEEcCCcHHHHHHHHHHHhCC----
Confidence 3455566665553 33455555567899999999999999975 11 12 6899999999998887766421
Q ss_pred hcccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccc
Q 010125 185 IGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAIT 264 (517)
Q Consensus 185 ~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G 264 (517)
|.+ ..++.|+++.++|.++..+++..|. +++.+|++. +++.+|+++|++++++.+ .+|+++.+++++|
T Consensus 115 -g~~-~~~d~vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~-~g~~~d~~~l~~~~~~~~------~~v~l~~p~nptG 182 (396)
T 3jtx_A 115 -VSD-GIKPAIVSPNPFYQIYEGATLLGGG---EIHFANCPA-PSFNPDWRSISEEVWKRT------KLVFVCSPNNPSG 182 (396)
T ss_dssp -----CCCCEEEEEESCCHHHHHHHHHTTC---EEEEEECCT-TTCCCCGGGSCHHHHHTE------EEEEEESSCTTTC
T ss_pred -CCc-cCCCEEEEcCCCcHhHHHHHHHcCC---EEEEeecCC-CCCccCHHHHHHhhccCc------EEEEEECCCCCCC
Confidence 000 0025788888999999999999999 999999954 356889999999998644 3777788999999
Q ss_pred cccChhH---HHHHHHHhCCeEEcccccccccccCcccccccc------CCCCCCeeeeccccccC-CCCcceEEEEeCc
Q 010125 265 AVDPLKP---LCDVAKQFGIWVHVDAAYAGSACICPEFRHFID------GVEGADSFSLNAHKWFF-ATLDCCCLWVKDP 334 (517)
Q Consensus 265 ~idpl~e---I~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~------g~~~aDsi~~~~hK~l~-~p~~~g~l~~~~~ 334 (517)
.+-|.++ |+++|++||+++++|++|+.+............ .-...+.+..+++|.++ ....+|+++.. +
T Consensus 183 ~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~ 261 (396)
T 3jtx_A 183 SVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGD-A 261 (396)
T ss_dssp CCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEEC-H
T ss_pred CcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCcccceEEEEeC-H
Confidence 9976555 999999999999999999876543211111110 01255678889999754 44678887653 3
Q ss_pred hhHHhhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 010125 335 RALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNY-GVANLRHFLRSHVNMAKLFERLVSGDKRF 413 (517)
Q Consensus 335 ~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~-g~~g~~~~i~~~~~~a~~l~~~l~~~~~~ 413 (517)
... ..+.....+. +.....+...++...+ -.+.+.++.++..++.+++.+.|++. +
T Consensus 262 ~~~-~~~~~~~~~~--------------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~--~ 318 (396)
T 3jtx_A 262 ELL-KNFLLYRTYH--------------------GSAMSIPVQRASIAAWDDEQHVIDNRRLYQEKFERVIPILQQV--F 318 (396)
T ss_dssp HHH-HHHHHHHHHH--------------------TCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTT--S
T ss_pred HHH-HHHHHHHhhc--------------------ccCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc--C
Confidence 322 2221100000 0011223333333332 24567788888888999999999875 3
Q ss_pred EEecCCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHH-hcCcEEEeeeeE--------CCEeEEE
Q 010125 414 EIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESIN-ASGKAYMTHAVL--------GGIYAIR 484 (517)
Q Consensus 414 ~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~--------~g~~~lR 484 (517)
.+..+....++.+.+.... ..++.++|. +.|+...++..+ .+..++|
T Consensus 319 ~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iR 374 (396)
T 3jtx_A 319 DVKLPDASFYIWLKVPDGD------------------------DLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVR 374 (396)
T ss_dssp CCCCCSSSSEEEEECTTSC------------------------HHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEE
T ss_pred CccCCCeeEEEEEECCCCC------------------------HHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEE
Confidence 3332333334455553210 234555554 457654443322 2357999
Q ss_pred EEecCCCCcHHHHHHHHHHHHHH
Q 010125 485 FATGATLTEKRHVVVAWTVVQQH 507 (517)
Q Consensus 485 ~~~~~~~t~~~di~~l~~~l~~~ 507 (517)
++++. +++++++++++|.++
T Consensus 375 is~~~---~~~~i~~~l~~l~~~ 394 (396)
T 3jtx_A 375 IALVA---DVATCVKAAEDIVSL 394 (396)
T ss_dssp EECCS---CHHHHHHHHHHHHHH
T ss_pred EEEcC---CHHHHHHHHHHHHHH
Confidence 99853 788999999998875
No 134
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.88 E-value=6.3e-21 Score=197.31 Aligned_cols=335 Identities=9% Similarity=-0.012 Sum_probs=215.4
Q ss_pred ChHHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHH
Q 010125 105 SIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNK 184 (517)
Q Consensus 105 ~~~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~ 184 (517)
.++..+.+.+..........|....+..++++++.+|+....+.+.. ..+++|+|||+|+..++.+..+
T Consensus 56 ~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~------~~i~~t~g~~~al~~~~~~l~~----- 124 (418)
T 3rq1_A 56 VFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEGH------IRSIATAGGTGGIHHLIHNYTE----- 124 (418)
T ss_dssp CCCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSE------EEEEEESHHHHHHHHHHHHHSC-----
T ss_pred cccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhcccCcccc------ccEEECCchHHHHHHHHHHhcC-----
Confidence 34445566666655444456766667889999999999887664321 2689999999999888775532
Q ss_pred hcccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeecc-CCcc
Q 010125 185 IGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIG-TTAI 263 (517)
Q Consensus 185 ~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~g-tt~~ 263 (517)
+++.|+++.++|.++..+++..|. +++.+|++.+ ++.+|+++|++++++..... ...+|+++.+ +|++
T Consensus 125 ------~gd~Vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~~-~~~~d~~~l~~~l~~~~~~~-~~~~vi~~~p~~NPt 193 (418)
T 3rq1_A 125 ------PGDEVLTADWYWGAYRVICSDTGR---TLVTYSLFDE-HNNFNHEAFQNRVNELAAKQ-TNVVVIFNTPGNNPT 193 (418)
T ss_dssp ------TTCEEEEESSCCTHHHHHHHHTTC---EEEEECSBCT-TSSBCHHHHHHHHHHHHHHC-SEEEEEEECSSCTTT
T ss_pred ------CCCEEEECCCCchhHHHHHHHcCC---EEEEEeeeCC-CCCcCHHHHHHHHHHhhccC-CCEEEEEeCCCCCCC
Confidence 556788889999999999999999 9999998643 47999999999998642111 1236777778 8999
Q ss_pred ccccChhHH---HHHHH------HhCCeEEcccccccccccCccccccccCCC--CCC---eeeeccccccC-CCCcceE
Q 010125 264 TAVDPLKPL---CDVAK------QFGIWVHVDAAYAGSACICPEFRHFIDGVE--GAD---SFSLNAHKWFF-ATLDCCC 328 (517)
Q Consensus 264 G~idpl~eI---~~i~~------~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~--~aD---si~~~~hK~l~-~p~~~g~ 328 (517)
|.+-|.+++ +++|+ +||+++++|++|.++............... .-| .++.++||.++ .....|+
T Consensus 194 G~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~ 273 (418)
T 3rq1_A 194 GYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGA 273 (418)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCSSCCEE
T ss_pred CCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcCCcceE
Confidence 999775554 55555 899999999999765532111112111111 123 55678999997 4467888
Q ss_pred EEE--eCchhHHhhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcH--------HHHHHHHHHHHH
Q 010125 329 LWV--KDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGV--------ANLRHFLRSHVN 398 (517)
Q Consensus 329 l~~--~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~--------~g~~~~i~~~~~ 398 (517)
++. ++++... .+.....+.... .......+...++...+.. +...++.++..+
T Consensus 274 ~~~~~~~~~~~~-~~~~~~~~~~~~----------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~ 336 (418)
T 3rq1_A 274 MIGISDDEEIAD-EFFEVNKSTSRA----------------TWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRD 336 (418)
T ss_dssp EEEEESSHHHHH-HHHHHHHHHHHH----------------HTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCHHHHH-HHHHHHHHHHhh----------------ccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 876 3444322 221111111000 0001123333444433322 123355567778
Q ss_pred HHHHHHHHHhcCCCeEEecCCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeEC
Q 010125 399 MAKLFERLVSGDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLG 478 (517)
Q Consensus 399 ~a~~l~~~l~~~~~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~ 478 (517)
+++++.+.|+++ ++++. ++..+++.|.-.+. ..++.+.|.++|+...++
T Consensus 337 ~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~-------------------------~~~~~~~l~~~gi~v~~g---- 385 (418)
T 3rq1_A 337 RADIFKQEAAQV-GLPML-PYRGGFFITIPTDS-------------------------ANAICEELKKEHIYVIAL---- 385 (418)
T ss_dssp HHHHHHHHHHHH-TCCCC-CCCSSSEEEEECTT-------------------------HHHHHHHHHHTTEECEEC----
T ss_pred HHHHHHHHHHhc-CCCCC-CCCceEEEEcCCCC-------------------------HHHHHHHHHhCCEEEecC----
Confidence 888899999877 77765 45555554432221 235566677778654432
Q ss_pred CEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 010125 479 GIYAIRFATGATLTEKRHVVVAWTVVQQHLEAFQ 512 (517)
Q Consensus 479 g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l~ 512 (517)
..++|++++ ..+++++++++++|.++.+++.
T Consensus 386 -~~~iRis~~--~~~~~~i~~~~~~l~~~l~~~~ 416 (418)
T 3rq1_A 386 -ANGIRIAAC--GIPKCQMTGLAEKIYNAMKSLG 416 (418)
T ss_dssp -SSEEEEEGG--GSCHHHHTTHHHHHHHHHHHTT
T ss_pred -CCCeEEEEe--cCCHHHHHHHHHHHHHHHHHHh
Confidence 357999974 4578899999999999887653
No 135
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.88 E-value=6.6e-22 Score=204.37 Aligned_cols=308 Identities=11% Similarity=0.057 Sum_probs=191.1
Q ss_pred hhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHH---
Q 010125 130 AATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQ--- 206 (517)
Q Consensus 130 ~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~--- 206 (517)
....+++.+.+++++++|.+.. -+++++||+|+..++.+... +++.|+++..+|.++.
T Consensus 73 ~~~~~~~~~~~~la~~~~~~~~--------~v~~~sGs~a~~~a~~~~~~-----------~gd~v~~~~~~~~~~~~~~ 133 (420)
T 3gbx_A 73 YVDVVEQLAIDRAKELFGADYA--------NVQPHSGSQANFAVYTALLQ-----------PGDTVLGMNLAQGGHLTHG 133 (420)
T ss_dssp -CHHHHHHHHHHHHHHHTCSEE--------ECCCSSHHHHHHHHHHHHCC-----------TTCEEEEEEEC--------
T ss_pred HHHHHHHHHHHHHHHHhCCCCc--------eeEecCcHHHHHHHHHHhcC-----------CCCEEEecchhhcceeccc
Confidence 3456788888999999998654 24445668999888766532 5667888888998743
Q ss_pred HHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEcc
Q 010125 207 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVD 286 (517)
Q Consensus 207 kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvD 286 (517)
......|.+. ..+.++.+ .++.+|+++|++++++.. +.+|+++.+++ |...|+++|+++|++||+++|+|
T Consensus 134 ~~~~~~g~~~-~~~~~~~~--~~~~~d~~~l~~~i~~~~-----~~~v~~~~~~~--~~~~~l~~l~~l~~~~~~~li~D 203 (420)
T 3gbx_A 134 SPVNFSGKLY-NIVPYGID--ESGKIDYDEMAKLAKEHK-----PKMIIGGFSAY--SGVVDWAKMREIADSIGAYLFVD 203 (420)
T ss_dssp ----CHHHHS-EEEEEEEC--TTCSCCHHHHHHHHHHHC-----CSEEEECCTTC--CSCCCHHHHHHHHHHTTCEEEEE
T ss_pred hhhhhcccce-eEEeccCC--ccCCcCHHHHHHHHHhcC-----CeEEEEecCcc--CCccCHHHHHHHHHHcCCEEEEE
Confidence 2222333310 34455555 357899999999998741 23677766554 46889999999999999999999
Q ss_pred cccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCc--hhHHhhhcCCccccCCccccccccccCCCc
Q 010125 287 AAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDP--RALVSSLSTNPEYLKNKATESMQVVDYKDW 364 (517)
Q Consensus 287 aA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~--~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~ 364 (517)
++|+.+......+.. .+..+|+++.++||++++|.+ |+++.++. .. ...+. .+....
T Consensus 204 e~~~~~~~~~~~~~~---~~~~~di~~~s~sK~~~g~~g-g~~~~~~~~~~~-~~~~~---~~~~~~------------- 262 (420)
T 3gbx_A 204 MAHVAGLIAAGVYPN---PVPHAHVVTTTTHKTLAGPRG-GLILAKGGDEEL-YKKLN---SAVFPS------------- 262 (420)
T ss_dssp CTTTHHHHHTTSSCC---STTTSSEEEEESSGGGCSCSC-EEEEESSCCHHH-HHHHH---HHHC---------------
T ss_pred CCcchhceecccCCc---ccccCCEEEeecccCCCCCCc-eEEEEcCCcHHH-HHHhh---hhcCCC-------------
Confidence 998765543222211 133589999999999987764 77777651 22 22221 011100
Q ss_pred cccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC-CCeeEEEEEecCCCcchhhhhhhhh
Q 010125 365 QITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFP-CHFAVVCFRVSPSPVLMDKLKTKYV 443 (517)
Q Consensus 365 ~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~-~~~~~v~f~~~~~~~~~~~~~~~~~ 443 (517)
+..........++..++.....++++++.++..++++++.+.|++ .+++++.+ ...+++.+.+.+..
T Consensus 263 ~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~~~~----------- 330 (420)
T 3gbx_A 263 AQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLN-RGYKVVSGGTENHLFLLDLVDKN----------- 330 (420)
T ss_dssp --CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH-TTCEEGGGSCSSSEEEEECGGGT-----------
T ss_pred CCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh-cCCeeccCCCCCeEEEEEcCCCC-----------
Confidence 000000011224444555555577888999999999999999988 48888653 34566666654321
Q ss_pred ccccchHHHHHHHHHHHHHHHHhcCcEEEee------eeECCEeEEEEEecCCC---CcHHHHHHHHHHHHHHHHH
Q 010125 444 NCLLSEEEQINEFNRELLESINASGKAYMTH------AVLGGIYAIRFATGATL---TEKRHVVVAWTVVQQHLEA 510 (517)
Q Consensus 444 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~------~~~~g~~~lR~~~~~~~---t~~~di~~l~~~l~~~~~~ 510 (517)
.....+.+.|.+.|+.+... ....+...+|+++.... .++++++++++.|+++.++
T Consensus 331 -----------~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 395 (420)
T 3gbx_A 331 -----------LTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDN 395 (420)
T ss_dssp -----------CCHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred -----------CCHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhC
Confidence 01244556666778754431 11123345999984322 3578999999999887543
No 136
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.88 E-value=4.2e-21 Score=194.62 Aligned_cols=308 Identities=10% Similarity=0.064 Sum_probs=202.6
Q ss_pred HHHHHHHHhccccc---ccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHH
Q 010125 108 GFLGEMLSSGFNIV---GFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNK 184 (517)
Q Consensus 108 ~~~~~~l~~~~n~~---~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~ 184 (517)
..+.+.+...+... ...|.. +...++ ++++++++|.+++ ..++|+|||+|+..++.+..+
T Consensus 42 ~~v~~a~~~~~~~~~~~~~~y~~-~~~~~l----r~~la~~~g~~~~-------~i~~t~g~~~al~~~~~~l~~----- 104 (360)
T 3hdo_A 42 PEVVKAILEELGPDGAALRIYPS-ASSQKL----REVAGELYGFDPS-------WIIMANGSDEVLNNLIRAFAA----- 104 (360)
T ss_dssp HHHHHHHHHHHTTTCGGGGSCCC-SSCHHH----HHHHHHHHTCCGG-------GEEEESSHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhcccchhhcCCC-CchHHH----HHHHHHHhCcCcc-------eEEEcCCHHHHHHHHHHHHhC-----
Confidence 34445555555432 233322 333444 4556666676654 689999999999888776532
Q ss_pred hcccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccc
Q 010125 185 IGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAIT 264 (517)
Q Consensus 185 ~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G 264 (517)
+++.|++..++|.++..+++..|+ +++.+|++. ++.+ +++++++ .+.+|+++.++|++|
T Consensus 105 ------~gd~Vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~--~~~~--~~l~~~~--------~~~~v~i~~p~nptG 163 (360)
T 3hdo_A 105 ------EGEEIGYVHPSYSYYGTLAEVQGA---RVRTFGLTG--DFRI--AGFPERY--------EGKVFFLTTPNAPLG 163 (360)
T ss_dssp ------TTCEEEEESSSCTHHHHHHHHHTC---EEEEECBCT--TSSB--TTCCSSB--------CSSEEEEESSCTTTC
T ss_pred ------CCCEEEEcCCChHHHHHHHHHCCC---EEEEeeCCC--CCCH--HHHHhhc--------CCCEEEEeCCCCCCC
Confidence 456788888999999999999999 999999874 3455 4433221 123788888999999
Q ss_pred cccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccC-CCCcceEEEEeCchhHHhhhcC
Q 010125 265 AVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFF-ATLDCCCLWVKDPRALVSSLST 343 (517)
Q Consensus 265 ~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~-~p~~~g~l~~~~~~~~~~~~~~ 343 (517)
.+.|+++|.++|+++|+++++|++|+.+.. ........ ....+.++.++||+++ .+.++|+++. +++.. +.+..
T Consensus 164 ~~~~~~~l~~l~~~~~~~li~De~~~~~~~--~~~~~~~~-~~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~-~~~~~ 238 (360)
T 3hdo_A 164 PSFPLEYIDELARRCAGMLVLDETYAEFAE--SNALELVR-RHENVVVTRTLSKSYSLAGMRIGLAIA-RPEVI-AALDK 238 (360)
T ss_dssp CCCCHHHHHHHHHHBSSEEEEECTTGGGSS--CCCTHHHH-HCSSEEEEEESTTTTSCTTSCCEEEEC-CHHHH-HHHHH
T ss_pred CCcCHHHHHHHHHHCCCEEEEECChHhhCC--cchhHHhc-cCCCEEEEecchHhhcCCccceeeEee-CHHHH-HHHHH
Confidence 999999999999999999999999986421 11111111 1134467789999986 4467888877 33322 22211
Q ss_pred CccccCCccccccccccCCCccccCCCCCCchHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCee
Q 010125 344 NPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNY-GVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFA 422 (517)
Q Consensus 344 ~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~-g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~~~ 422 (517)
.... + ....+..+++...+ ..+.++++.++..++++++.+.|++. ++++. ++..+
T Consensus 239 ~~~~----------------~------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~ 294 (360)
T 3hdo_A 239 IRDH----------------Y------NLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSI-GYDVI-PSQGN 294 (360)
T ss_dssp HSCS----------------C------CSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEC-CCSSS
T ss_pred hCCC----------------C------CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEc-CCCcc
Confidence 0000 0 01233333333333 24567888899999999999999988 88875 56666
Q ss_pred EEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHH
Q 010125 423 VVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWT 502 (517)
Q Consensus 423 ~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~ 502 (517)
++.+.+... ...++.+.|.++|+.........+..++|+++. +++|++++++
T Consensus 295 ~~~~~~~~~------------------------~~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~----~~~e~~~l~~ 346 (360)
T 3hdo_A 295 YLFATPPDR------------------------DGKRVYDGLYARKVLVRHFSDPLLAHGMRISIG----TREEMEQTLA 346 (360)
T ss_dssp EEEEECTTC------------------------CHHHHHHHHHHTTEECBCCCSTTTTTSEEEECC----CHHHHHHHHH
T ss_pred EEEEECCCC------------------------CHHHHHHHHHHCCEEEEECCCCCCCCEEEEEcC----CHHHHHHHHH
Confidence 676665422 124566777778865433222233578999984 6789999999
Q ss_pred HHHHHHHH
Q 010125 503 VVQQHLEA 510 (517)
Q Consensus 503 ~l~~~~~~ 510 (517)
+|+++.+.
T Consensus 347 al~~~~~~ 354 (360)
T 3hdo_A 347 ALKEIGEG 354 (360)
T ss_dssp HHHHHHC-
T ss_pred HHHHHhcc
Confidence 99987654
No 137
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.88 E-value=1e-20 Score=191.73 Aligned_cols=285 Identities=10% Similarity=0.060 Sum_probs=193.3
Q ss_pred hHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCC-eEEEeCCCCchHHHHHH
Q 010125 131 ATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISK-LIVYGSDQTHCALQKAA 209 (517)
Q Consensus 131 ~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~-~~v~~s~~~H~s~~kaa 209 (517)
..++++ .+++++|.+++ ..++|+|+++++..++.+..+ ++ +.|++.+++|.++..++
T Consensus 60 ~~~lr~----~la~~~~~~~~-------~v~~~~G~~~ai~~~~~~~~~-----------~g~d~Vl~~~p~~~~~~~~~ 117 (356)
T 1fg7_A 60 PKAVIE----NYAQYAGVKPE-------QVLVSRGADEGIELLIRAFCE-----------PGKDAILYCPPTYGMYSVSA 117 (356)
T ss_dssp CHHHHH----HHHHHHTSCGG-------GEEEESHHHHHHHHHHHHHCC-----------TTTCEEEECSSSCTHHHHHH
T ss_pred HHHHHH----HHHHHhCCChH-------HEEEcCCHHHHHHHHHHHHhC-----------CCCCEEEEeCCChHHHHHHH
Confidence 445554 45555577654 689999999999877776532 44 67888899999999999
Q ss_pred HHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHH--hCCeEEccc
Q 010125 210 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQ--FGIWVHVDA 287 (517)
Q Consensus 210 ~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~--~gi~lhvDa 287 (517)
+..|. +++.+|.+. ++.+|+++|+++++ + +.+|+++.++|+||.+-|.++|.++++. ||+++++|+
T Consensus 118 ~~~g~---~~~~v~~~~--~~~~d~~~l~~~i~-~------~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De 185 (356)
T 1fg7_A 118 ETIGV---ECRTVPTLD--NWQLDLQGISDKLD-G------VKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADE 185 (356)
T ss_dssp HHHTC---EEEECCCCT--TSCCCHHHHHTSCT-T------EEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEEC
T ss_pred HHcCC---EEEEeeCCC--CCCCCHHHHHHHhc-C------CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCCEEEEEc
Confidence 99999 999999873 57899999998885 3 2377778999999999776555544443 899999999
Q ss_pred ccccccccCccccccccCCCCCCeeeeccccccC-CCCcceEEEEeCchhHHhhhcC-CccccCCccccccccccCCCcc
Q 010125 288 AYAGSACICPEFRHFIDGVEGADSFSLNAHKWFF-ATLDCCCLWVKDPRALVSSLST-NPEYLKNKATESMQVVDYKDWQ 365 (517)
Q Consensus 288 A~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~-~p~~~g~l~~~~~~~~~~~~~~-~~~yl~~~~~~~~~~~~~~~~~ 365 (517)
+|+.+.. ......... ....+.+..++||+++ .+..+|+++++ ++.. +.+.. ... +
T Consensus 186 ~~~~~~~-~~~~~~~~~-~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~-~~l~~~~~~-----------------~- 243 (356)
T 1fg7_A 186 AYIEFCP-QASLAGWLA-EYPHLAILRTLSKAFALAGLRCGFTLAN-EEVI-NLLMKVIAP-----------------Y- 243 (356)
T ss_dssp TTGGGSG-GGCSGGGTT-TCTTEEEEEESSSTTCCGGGCCEEEEEC-HHHH-HHHHHHSCS-----------------S-
T ss_pred cchhhcC-CCcHHHHHh-hCCCEEEEecchHhhcCchhhhEEEEeC-HHHH-HHHHHhcCC-----------------C-
Confidence 9987541 111111111 1234677889999997 44568988884 3332 22211 100 1
Q ss_pred ccCCCCCCchHHHHHHHHhcHHH---HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCeeEEEEEecCCCcchhhhhhhh
Q 010125 366 ITLSRRFRSLKLWFVIRNYGVAN---LRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKY 442 (517)
Q Consensus 366 ~~~sr~~~al~~~~~l~~~g~~g---~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~ 442 (517)
....+..+++...+...+ ++++.++..++++++.+.|++++++..+.++..+++.+++. .
T Consensus 244 -----~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~-~----------- 306 (356)
T 1fg7_A 244 -----PLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFK-A----------- 306 (356)
T ss_dssp -----CSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEET-T-----------
T ss_pred -----CCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEECCCCCeEEEEECC-C-----------
Confidence 113345556666665444 67788888899999999999887643344555666666663 2
Q ss_pred hccccchHHHHHHHHHHHHHHHHhcCcEEEe-eeeECCEeEEEEEecCCCCcHHHHHHHHHHHHH
Q 010125 443 VNCLLSEEEQINEFNRELLESINASGKAYMT-HAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQ 506 (517)
Q Consensus 443 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~ 506 (517)
..++.++|.++|+.... +..+....++|+++. +++|+++++++|++
T Consensus 307 --------------~~~l~~~L~~~gI~v~~~g~~~~~~~~iRis~~----~~~e~~~~~~~l~~ 353 (356)
T 1fg7_A 307 --------------SSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG----TREESQRVIDALRA 353 (356)
T ss_dssp --------------HHHHHHHHHHTTEECEECTTSTTCTTEEEEECC----CHHHHHHHHHHHHT
T ss_pred --------------HHHHHHHHHHCCEEEEECCCCCCCCCeEEEEeC----CHHHHHHHHHHHHh
Confidence 24566777677865443 222221348999984 46799999998865
No 138
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.87 E-value=2e-20 Score=187.52 Aligned_cols=302 Identities=10% Similarity=0.044 Sum_probs=202.8
Q ss_pred HHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcc
Q 010125 108 GFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGR 187 (517)
Q Consensus 108 ~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~ 187 (517)
..+.+.+...... ...| ..+...+++ +.+++++|.+++ ..++|+|+|+++..++.+.
T Consensus 32 ~~v~~a~~~~~~~-~~~y-~~~~~~~lr----~~la~~~~~~~~-------~i~~t~G~~~~l~~~~~~~---------- 88 (337)
T 3p1t_A 32 PRVQAAIAAAAAR-INRY-PFDAEPRVM----RKLAEHFSCPED-------NLMLVRGIDECFDRISAEF---------- 88 (337)
T ss_dssp HHHHHHHHHHGGG-TTSC-CTTHHHHHH----HHHHHHHTSCGG-------GEEEESHHHHHHHHHHHHS----------
T ss_pred HHHHHHHHHhhhh-hccC-CCCchHHHH----HHHHHHhCcCHH-------HEEEeCCHHHHHHHHHHhc----------
Confidence 3444555554432 2344 345555554 556666787654 6899999999887766543
Q ss_pred cCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcccccc
Q 010125 188 ENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVD 267 (517)
Q Consensus 188 ~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~id 267 (517)
+++.|++.+++|.++..+++..|+ +++.+|++. ++.+|+++|+++. + +.+|+++.++|++|.+.
T Consensus 89 ---~gd~vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~~--~------~~~v~i~~p~nptG~~~ 152 (337)
T 3p1t_A 89 ---SSMRFVTAWPGFDGYRARIAVSGL---RHFEIGLTD--DLLLDPNDLAQVS--R------DDCVVLANPSNPTGQAL 152 (337)
T ss_dssp ---TTSEEEEESSSCSHHHHHHTTSCC---EEEEECBCT--TSSBCHHHHTTCC--T------TEEEEEESSCTTTCCCC
T ss_pred ---CCCeEEEeCCCcHHHHHHHHHcCC---EEEEecCCC--CCCCCHHHHHhhc--C------CCEEEEeCCCCCCCCCC
Confidence 234578888999999999999999 999999875 5799999998751 1 34888999999999999
Q ss_pred ChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccC-CCCcceEEEEeCchhHHhhhcCCcc
Q 010125 268 PLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFF-ATLDCCCLWVKDPRALVSSLSTNPE 346 (517)
Q Consensus 268 pl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~-~p~~~g~l~~~~~~~~~~~~~~~~~ 346 (517)
|+++|.++|+++++ +++|++|+.+...... .......+.+..++||+++ .+.++|+++.++ ... ..+.....
T Consensus 153 ~~~~l~~l~~~~~~-~ivDea~~~~~~~~~~----~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~-~~~-~~l~~~~~ 225 (337)
T 3p1t_A 153 SAGELDQLRQRAGK-LLIDETYVDYSSFRAR----GLAYGENELVFRSFSKSYGLAGLRLGALFGPS-ELI-AAMKRKQW 225 (337)
T ss_dssp CHHHHHHHHHHCSE-EEEECTTGGGSSCSSS----CCCCBTTEEEEEESSSTTCCTTTCCEEEECCH-HHH-HHHHTTSC
T ss_pred CHHHHHHHHHhCCc-EEEECCChhhcccccc----ccccCCCEEEEeeCchhccCcchheEEEEeCH-HHH-HHHHhhcC
Confidence 99999999999997 5569999764321111 1122356688889999997 567788887643 222 22211100
Q ss_pred ccCCccccccccccCCCccccCCCCCCchHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCeeEEE
Q 010125 347 YLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYG-VANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVC 425 (517)
Q Consensus 347 yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g-~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~~~~v~ 425 (517)
+ + ....+...++...+. .+.+.+.+++..++++++.+.|++. ++++. ++..+++.
T Consensus 226 ~----------------~------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~ 281 (337)
T 3p1t_A 226 F----------------C------NVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGL-GYRVA-SSEANFVL 281 (337)
T ss_dssp T----------------T------CSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBC-CCSSSEEE
T ss_pred C----------------C------CCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-cCEEC-CCCCeEEE
Confidence 0 0 012233333333332 3456778888888899999999887 77764 56667777
Q ss_pred EEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHH
Q 010125 426 FRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQ 505 (517)
Q Consensus 426 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~ 505 (517)
|..... ..+.+.|.++|+...++..+....++|++++ +++++++++++|+
T Consensus 282 ~~~~~~--------------------------~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~----~~~~~~~l~~al~ 331 (337)
T 3p1t_A 282 VENAAG--------------------------ERTLRFLRERGIQVKDAGQFGLHHHIRISIG----REEDNDRLLAALA 331 (337)
T ss_dssp EECTTT--------------------------HHHHHHHHHTTEECEEGGGGTCCSEEEEECC----CHHHHHHHHHHHH
T ss_pred EEcCCH--------------------------HHHHHHHHHCCeEEEECccCCCCCeEEEecC----CHHHHHHHHHHHH
Confidence 665321 2345566677865544444433568999985 5789999999998
Q ss_pred HHHH
Q 010125 506 QHLE 509 (517)
Q Consensus 506 ~~~~ 509 (517)
++.+
T Consensus 332 ~~~~ 335 (337)
T 3p1t_A 332 EYSD 335 (337)
T ss_dssp HHTC
T ss_pred HHhh
Confidence 7643
No 139
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.87 E-value=1.2e-20 Score=195.90 Aligned_cols=328 Identities=13% Similarity=0.097 Sum_probs=208.2
Q ss_pred ccccChhhHHHHHHHHHHHHHHcCCCcccc-c-CCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCC
Q 010125 124 NWISSPAATELENIVMDWLGQMLKLPKSFL-F-SGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQT 201 (517)
Q Consensus 124 ~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~-~-~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~ 201 (517)
.|....+..++.+++.+|+++..|.+.... . .+....++|+|+++|+..++.+..+ +++.|++.+++
T Consensus 73 ~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~-----------~gd~Vlv~~p~ 141 (425)
T 2r2n_A 73 QYSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIIN-----------PGDNVLLDEPA 141 (425)
T ss_dssp SCCCTTCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCC-----------TTCEEEEESSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCC-----------CCCEEEEeCCC
Confidence 355555667899999999999999864100 0 0002689999999999887776532 55678888899
Q ss_pred chHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhH------hcCCcceEEEe-eccCCccccccChh---H
Q 010125 202 HCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDV------EVGLIPLFLCA-TIGTTAITAVDPLK---P 271 (517)
Q Consensus 202 H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~------~~g~~p~~vv~-t~gtt~~G~idpl~---e 271 (517)
|.++..+++..|+ +++.+|++. + .+|+++|++++++.. ..+..+.+|++ ..++|+||.+-|.+ +
T Consensus 142 y~~~~~~~~~~g~---~~~~v~~~~--~-~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~ 215 (425)
T 2r2n_A 142 YSGTLQSLHPLGC---NIINVASDE--S-GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKE 215 (425)
T ss_dssp CHHHHHHHGGGTC---EEEEECEET--T-EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHH
T ss_pred cHHHHHHHHHcCC---EEEEeCcCC--C-CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHH
Confidence 9999999999999 999999874 2 499999999997321 00112335544 67899999997755 9
Q ss_pred HHHHHHHhCCeEEcccccccccccCcccccccc-CCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCccccCC
Q 010125 272 LCDVAKQFGIWVHVDAAYAGSACICPEFRHFID-GVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKN 350 (517)
Q Consensus 272 I~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~-g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl~~ 350 (517)
|+++|++||+++++|++|+.+.+.......... .....+.+..+++|+++....+|++++++. +.+.+.......
T Consensus 216 l~~~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~~--l~~~l~~~~~~~-- 291 (425)
T 2r2n_A 216 IYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPKP--LIERVILHIQVS-- 291 (425)
T ss_dssp HHHHHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEHH--HHHHHHHHHHTT--
T ss_pred HHHHHHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhccCccceEEEecCHH--HHHHHHHHHHHh--
Confidence 999999999999999999865432211111111 111334677889999984456899988643 222221100000
Q ss_pred ccccccccccCCCccccCCCCCCchHHHHHHHHhcH----HHHHHHHHHHHHHHHHHHHHHhc-CCCeEEecCCC-eeEE
Q 010125 351 KATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGV----ANLRHFLRSHVNMAKLFERLVSG-DKRFEIVFPCH-FAVV 424 (517)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~----~g~~~~i~~~~~~a~~l~~~l~~-~~~~~l~~~~~-~~~v 424 (517)
+. +...+....+..+++..+. +.++++.+++.++++++.+.|++ .|++..+..|. ..++
T Consensus 292 --------------~~-~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~ 356 (425)
T 2r2n_A 292 --------------TL-HPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFL 356 (425)
T ss_dssp --------------TC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEE
T ss_pred --------------cC-CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEE
Confidence 00 0000111222333333222 33555667777888899999987 67774333344 4445
Q ss_pred EEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeEC-----CEeEEEEEecCCCCcHHHHHH
Q 010125 425 CFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLG-----GIYAIRFATGATLTEKRHVVV 499 (517)
Q Consensus 425 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-----g~~~lR~~~~~~~t~~~di~~ 499 (517)
.+.+.... + ....+.+.+.+.|+.+.++..+. +..++|++++. .+++++++
T Consensus 357 ~~~~~~~~----------------~------~~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~--~~~~~i~~ 412 (425)
T 2r2n_A 357 WIKVKGIN----------------D------VKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSS--ASPEQMDV 412 (425)
T ss_dssp EEEETTCS----------------C------CHHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSS--CCHHHHHH
T ss_pred EEEeCCCC----------------C------HHHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCC--CCHHHHHH
Confidence 55664320 0 01224556667787655444332 24789999852 48889999
Q ss_pred HHHHHHHHHHHH
Q 010125 500 AWTVVQQHLEAF 511 (517)
Q Consensus 500 l~~~l~~~~~~l 511 (517)
++++|.++.++.
T Consensus 413 ~~~~l~~~l~~~ 424 (425)
T 2r2n_A 413 AFQVLAQLIKES 424 (425)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999887653
No 140
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.87 E-value=8.3e-22 Score=198.52 Aligned_cols=318 Identities=15% Similarity=0.117 Sum_probs=193.8
Q ss_pred HHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcc
Q 010125 108 GFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGR 187 (517)
Q Consensus 108 ~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~ 187 (517)
..+.+.+...... ...|...+...++| +++++++|.+ ..++++|||+|+..++.+..+
T Consensus 18 ~~~~~a~~~~~~~-~~~y~~~~~~~~l~----~~la~~~g~~---------~~~~~~~gt~a~~~~~~~~~~-------- 75 (347)
T 1jg8_A 18 EEMRKAMAQAEVG-DDVYGEDPTINELE----RLAAETFGKE---------AALFVPSGTMGNQVSIMAHTQ-------- 75 (347)
T ss_dssp HHHHHHHHTCCCC-CGGGTCCHHHHHHH----HHHHHHHTCS---------EEEEESCHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHhcCCCC-CcccCCChHHHHHH----HHHHHHhCCc---------eEEEecCcHHHHHHHHHHhcC--------
Confidence 3455555544321 22455566666665 4566666764 358889999998877755422
Q ss_pred cCCCCeEEEeCCCCchHHHH---HHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcc-
Q 010125 188 ENISKLIVYGSDQTHCALQK---AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAI- 263 (517)
Q Consensus 188 ~~~~~~~v~~s~~~H~s~~k---aa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~- 263 (517)
+++.|++++++|.+... ++...|+ +++.+ .++ ++.+|+++|+++|++....+..+.+|+++.+++++
T Consensus 76 ---~gd~Vl~~~~~~~~~~~~~~~~~~~g~---~~~~v-~~~--~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~ 146 (347)
T 1jg8_A 76 ---RGDEVILEADSHIFWYEVGAMAVLSGV---MPHPV-PGK--NGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSG 146 (347)
T ss_dssp ---TTCEEEEETTCHHHHSSTTHHHHHTCC---EEEEE-CEE--TTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTT
T ss_pred ---CCCEEEEcCcchhhhccccchhhccCe---EEEEe-cCC--CCccCHHHHHHHhccccccccCceEEEEeccccccC
Confidence 55678888999987653 5677888 88888 442 46899999999986421011134578888999999
Q ss_pred ccccC---hhHHHHHHHHhCCeEEccccccccccc--CccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHH
Q 010125 264 TAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACI--CPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALV 338 (517)
Q Consensus 264 G~idp---l~eI~~i~~~~gi~lhvDaA~g~~~~~--~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~ 338 (517)
|.+-| +++|+++|++||+++|+|+||.-+... ......+. ..+|++++++||+++.|. |.+++.+++...
T Consensus 147 G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~---~~~d~~~~s~sK~l~~~~--G~~~~~~~~~~~ 221 (347)
T 1jg8_A 147 GRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYA---GYADSVMFCLSKGLCAPV--GSVVVGDRDFIE 221 (347)
T ss_dssp SBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHH---HTCSEEEEESSSTTCCSS--CEEEEECHHHHH
T ss_pred CccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhc---ccccEEEEecccccCCCc--eEEEEcCHHHHH
Confidence 99855 578999999999999999987422111 00111111 268888999999998774 544454554332
Q ss_pred hhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe-c
Q 010125 339 SSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIV-F 417 (517)
Q Consensus 339 ~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~-~ 417 (517)
...... .++. .+.+..++..+++...+ +...+.+++..++++++.+.|++. ++++. .
T Consensus 222 ~~~~~~-~~~~------------------~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~ 279 (347)
T 1jg8_A 222 RARKAR-KMLG------------------GGMRQAGVLAAAGIIAL--TKMVDRLKEDHENARFLALKLKEI-GYSVNPE 279 (347)
T ss_dssp HHHHHH-HHHT------------------CCCSSTHHHHHHHHHHH--HHSSTTHHHHHHHHHHHHHHHHHH-TCBCCGG
T ss_pred HHHHHH-HHcC------------------CchhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhc-CceeccC
Confidence 211100 0110 00011222222222222 111122344456778888888877 67653 2
Q ss_pred CCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHH
Q 010125 418 PCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHV 497 (517)
Q Consensus 418 ~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di 497 (517)
++..+++++++..... ...++.++|.+.|+..... +..++|+++ +..++++|+
T Consensus 280 ~~~~~~~~~~~~~~~~----------------------~~~~~~~~l~~~gi~v~~~----~~~~iRl~~-~~~~~~e~i 332 (347)
T 1jg8_A 280 DVKTNMVILRTDNLKV----------------------NAHGFIEALRNSGVLANAV----SDTEIRLVT-HKDVSRNDI 332 (347)
T ss_dssp GCCSSEEEEECTTSSS----------------------CHHHHHHHHHHHTEECEEE----ETTEEEEEC-CTTSCHHHH
T ss_pred CCcceEEEEEcccccC----------------------CHHHHHHHHHHCCCEEecC----CCCeEEEEe-CCCCCHHHH
Confidence 4556777777642110 1245667776778654322 134799998 456788899
Q ss_pred HHHHHHHHHHHHH
Q 010125 498 VVAWTVVQQHLEA 510 (517)
Q Consensus 498 ~~l~~~l~~~~~~ 510 (517)
++++++|+++.++
T Consensus 333 ~~~~~~l~~~l~~ 345 (347)
T 1jg8_A 333 EEALNIFEKLFRK 345 (347)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988654
No 141
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.87 E-value=1.2e-20 Score=193.81 Aligned_cols=229 Identities=14% Similarity=0.110 Sum_probs=167.0
Q ss_pred HHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHH----HH
Q 010125 136 NIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAA----QI 211 (517)
Q Consensus 136 ~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa----~~ 211 (517)
.++.+.+++++|.+ ..++++|||+|+..++.++.. +++.|+++...|.+....+ +.
T Consensus 69 ~~l~~~la~~~g~~---------~~~~~~sGt~A~~~al~~~~~-----------~gd~Vi~~~~~y~~~~~~~~~~~~~ 128 (392)
T 3qhx_A 69 TALEAALAAVEDAA---------FGRAFSSGMAAADCALRAMLR-----------PGDHVVIPDDAYGGTFRLIDKVFTG 128 (392)
T ss_dssp HHHHHHHHHHTTCS---------EEEEESSHHHHHHHHHHHHCC-----------TTCEEEEETTCCHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHhCCC---------cEEEECCHHHHHHHHHHHHhC-----------CCCEEEEeCCCcchHHHHHHHHHHh
Confidence 34556677777765 468899999999888876532 4567888999998877665 55
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEccccccc
Q 010125 212 VGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAG 291 (517)
Q Consensus 212 ~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~ 291 (517)
.|+ +++.+|.+ |+++|+++|++++ .+|++..+++++|.+.|+++|+++|++||+++|+|++|+.
T Consensus 129 ~g~---~~~~v~~~-------d~~~l~~~i~~~~------~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~ 192 (392)
T 3qhx_A 129 WNV---EYTPVALA-------DLDAVRAAIRPTT------RLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFAS 192 (392)
T ss_dssp GTC---EEEEECTT-------CHHHHHHHCCTTE------EEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTC
T ss_pred cCc---EEEEeCCC-------CHHHHHHhhCCCC------eEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCcc
Confidence 677 88888763 8999999997654 3788899999999999999999999999999999999976
Q ss_pred ccccCccccccccCCCCCCeeeeccccccCCCC--cceEEEEeCchhHHhhhcCCccccCCccccccccccCCCccccCC
Q 010125 292 SACICPEFRHFIDGVEGADSFSLNAHKWFFATL--DCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLS 369 (517)
Q Consensus 292 ~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~--~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~s 369 (517)
+....+ . . .++|.++.++||+++.+. .+|+++.+++.... .+.. .. ...+
T Consensus 193 ~~~~~~-~-~-----~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~-~l~~----~~----------------~~~g 244 (392)
T 3qhx_A 193 PALQQP-L-S-----LGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQ-SFAF----LQ----------------NGAG 244 (392)
T ss_dssp TTTCCG-G-G-----GTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHH-HHHH----HH----------------HHHC
T ss_pred cccCCh-H-H-----hCCcEEEEcCccccCCCCCceEEEEEECcHHHHH-HHHH----HH----------------HhcC
Confidence 643222 1 1 168999999999998764 37888877654332 2210 00 0011
Q ss_pred CCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCC-----------------eeEEEEEecC
Q 010125 370 RRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCH-----------------FAVVCFRVSP 430 (517)
Q Consensus 370 r~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~-----------------~~~v~f~~~~ 430 (517)
....++..|++++.+ +.+..++++..++++++.+.|++.|.+.-+..|. .++++|.+.+
T Consensus 245 ~~~~~~~~~~~~~~l--~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~ 320 (392)
T 3qhx_A 245 AVPGPFDAYLTMRGL--KTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRA 320 (392)
T ss_dssp CCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT
T ss_pred CCCCHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCC
Confidence 223556677766643 4567788899999999999999998875543221 4578888865
No 142
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.87 E-value=1.9e-20 Score=192.02 Aligned_cols=336 Identities=10% Similarity=0.049 Sum_probs=203.1
Q ss_pred CChHHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHH
Q 010125 104 GSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLN 183 (517)
Q Consensus 104 ~~~~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~ 183 (517)
+..+..+.+.+...+... .|..++...++|+.+. +++|.+ .++++++||+|+..++.+++...
T Consensus 11 ~~~~~~~~~a~~~~~~~~--~~~~~~~~~~l~~~la----~~~~~~---------~~i~~~sGt~a~~~al~~~~~~~-- 73 (390)
T 3b8x_A 11 STWDDLEYKAIQSVLDSK--MFTMGEYVKQYETQFA----KTFGSK---------YAVMVSSGSTANLLMIAALFFTK-- 73 (390)
T ss_dssp CCCCHHHHHHHHHHHHHT--CCSSCHHHHHHHHHHH----HHHTCS---------EEEEESCHHHHHHHHHHHTTSSS--
T ss_pred CCCCHHHHHHHHHHHHcC--CCCCChHHHHHHHHHH----HHHCCC---------cEEEECCHHHHHHHHHHHHHhhh--
Confidence 333334444454444321 3445566666666554 555654 36889999999988887663100
Q ss_pred HhcccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcc
Q 010125 184 KIGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAI 263 (517)
Q Consensus 184 ~~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~ 263 (517)
..+. .++..|+++..+|.++..+++..|+ +++.+|++++ ++.+|+++|+++|++++ .+|+++ +++
T Consensus 74 ~~~~--~~g~~Vi~~~~~~~~~~~~~~~~g~---~~~~~~~~~~-~~~~d~~~l~~~i~~~~------~~v~~~---~~~ 138 (390)
T 3b8x_A 74 KPRL--KKGDEIIVPAVSWSTTYYPLQQYGL---RVKFVDIDIN-TLNIDIESLKEAVTDST------KAILTV---NLL 138 (390)
T ss_dssp SCSC--CTTCEEEEESSSCHHHHHHHHHTTC---EEEEECBCTT-TCSBCHHHHHHHCCTTE------EEEEEE---CGG
T ss_pred hcCC--CCcCEEEECCCCcHHHHHHHHHcCC---EEEEEecCcc-ccCcCHHHHHHHhCcCC------eEEEEE---CCc
Confidence 0001 1556788999999999999999999 9999999863 48999999999997643 255554 257
Q ss_pred ccccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCe--eeeccccccCCCCcceEEEEeCchhHHh--
Q 010125 264 TAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADS--FSLNAHKWFFATLDCCCLWVKDPRALVS-- 339 (517)
Q Consensus 264 G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDs--i~~~~hK~l~~p~~~g~l~~~~~~~~~~-- 339 (517)
|...|+++|+++|++||+++|+|+||+.+.... .+. . +. ..|. +++..+|.+++|.| |+++++++.....
T Consensus 139 g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~--~~~-~-g~-~~~~~~~s~~~~k~~~~g~g-G~~~~~~~~l~~~~~ 212 (390)
T 3b8x_A 139 GNPNNFDEINKIIGGRDIILLEDNCESMGATFN--NKC-A-GT-FGLMGTFSSFYSNHIATMEG-GCIVTDDEEIYHILL 212 (390)
T ss_dssp GCCCCHHHHHHHHTTSCCEEEEECTTCTTCEET--TEE-T-TS-SSSEEEEECCTTSSSCSSSC-EEEEESCHHHHHHHH
T ss_pred cChhhHHHHHHHHHHcCCEEEEECcCcccCEEC--Ccc-c-cc-ccceEEEEccCCCCCccCCc-eEEEeCCHHHHHHHH
Confidence 888999999999999999999999998554432 111 1 11 2244 44334455555554 8887776443211
Q ss_pred hhcCCccccCC---c-----cccccccccCCCccccCCCC--CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhc
Q 010125 340 SLSTNPEYLKN---K-----ATESMQVVDYKDWQITLSRR--FRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSG 409 (517)
Q Consensus 340 ~~~~~~~yl~~---~-----~~~~~~~~~~~~~~~~~sr~--~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~ 409 (517)
.+... .+..+ . ............+. ..+.+ ...+..++++.. .+.++++.++..++++++.+.|++
T Consensus 213 ~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~aa~~l~~--l~~l~~~~~~~~~~~~~l~~~L~~ 288 (390)
T 3b8x_A 213 CIRAH-GWTRNLPKKNKVTGVKSDDQFEESFKFV-LPGYNVRPLEMSGAIGIEQ--LKKLPRFISVRRKNAEYFLDKFKD 288 (390)
T ss_dssp HHTBT-TBSTTSCSEETTTEECCSCTTTSSSCBC-SCCCBCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhc-CCCcccccccccccccccccccccccee-ccccccCcCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 11111 00000 0 00000000000011 11222 344566666554 467888999999999999999999
Q ss_pred CCCeEEecCC-CeeE--EEEEecCC-CcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEe---ee---e---
Q 010125 410 DKRFEIVFPC-HFAV--VCFRVSPS-PVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMT---HA---V--- 476 (517)
Q Consensus 410 ~~~~~l~~~~-~~~~--v~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~---~~---~--- 476 (517)
+|++++..++ ..+. +.+.+.+. + ....++.+.|.+.|+..-. ++ .
T Consensus 289 ~~~~~~~~~~~~~~~~~~~i~~~~~~~----------------------~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~ 346 (390)
T 3b8x_A 289 HPYLDVQQETGESSWFGFSFIIKKDSG----------------------VIRKQLVENLNSAGIECRPIVTGNFLKNTDV 346 (390)
T ss_dssp CSSEEECCCCSBCCCCEEEEEECTTSC----------------------CCHHHHHHHHHHTTBCCBCSTTSSGGGCHHH
T ss_pred CCCcccCCCCCCcccEEEEEEecCcCc----------------------ccHHHHHHHHHHCCCCeeeecCCchhhcchh
Confidence 9899876432 3333 33344321 0 0124566777777764322 10 0
Q ss_pred EC--C--------------EeEEEEEecCCCCcHHHHHHHHHHH
Q 010125 477 LG--G--------------IYAIRFATGATLTEKRHVVVAWTVV 504 (517)
Q Consensus 477 ~~--g--------------~~~lR~~~~~~~t~~~di~~l~~~l 504 (517)
+. + ...||+++ ++.++++||+++++.|
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~l~l~~-~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 347 LKYFDYTVHNNVDNAEYLDKNGLFVGN-HQIELFDEIDYLREVL 389 (390)
T ss_dssp HTTCEEEESSCCHHHHHHHHHEEEEEC-CSSCCHHHHHHHHHHT
T ss_pred hhcCCCCCcCCChHHHHHhcCEEEeeC-CCCCCHHHHHHHHHhh
Confidence 00 0 13699997 6888999999999876
No 143
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.87 E-value=3.2e-21 Score=202.46 Aligned_cols=380 Identities=13% Similarity=0.085 Sum_probs=210.9
Q ss_pred CHHHHHHHHHHhhcCCCCCCCCC-ccceeCCCCCChHHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCc
Q 010125 72 SMETILQDVQQHIVPGITHWQSP-NYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPK 150 (517)
Q Consensus 72 ~~~~il~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~ 150 (517)
...+....+... -.+..+...+ .|++|..+.+. + .+.+.+...+......|...+...++++. +++++|.+
T Consensus 21 ~~~~~~~~~~~~-g~~~~~~~~g~~ylD~~~~~~~-~-~v~~a~~~~~~~~~~~y~~~~~~~~l~~~----la~~~~~~- 92 (467)
T 1ax4_A 21 SREEREAALKEA-GYNPFLLPSSAVYIDLLTDSGT-N-AMSDHQWAAMITGDEAYAGSRNYYDLKDK----AKELFNYD- 92 (467)
T ss_dssp CHHHHHHHHHHT-TSCGGGSCGGGCSEECSCSSSC-C-CEEHHHHHHHHTCCCCSSSCHHHHHHHHH----HHHHHCCC-
T ss_pred chhHHHHHHHhc-CcCcccCCCCceeeecccCcCC-H-HHHHHHHHHHhhcccccccCccHHHHHHH----HHHHcCCC-
Confidence 455555555442 1222333232 47887654433 2 23333333332223356556666666554 55555643
Q ss_pred ccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCc-hHHHHHHHHcCCCCCCEEEEecCC---
Q 010125 151 SFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTH-CALQKAAQIVGIDVKNFRAIKTTK--- 226 (517)
Q Consensus 151 ~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H-~s~~kaa~~~G~g~~~v~~vp~d~--- 226 (517)
.+++|+|||+|+..++.++++..... |+ .+.+|+++ ..| .+...++...|. .++.++.+.
T Consensus 93 --------~v~~t~ggt~A~~~al~~~~~~~~~~-Gd---~~~~viv~-~~~~~~~~~~~~~~g~---~~~~~~~~~~~~ 156 (467)
T 1ax4_A 93 --------YIIPAHQGRGAENILFPVLLKYKQKE-GK---AKNPVFIS-NFHFDTTAAHVELNGC---KAINIVTEKAFD 156 (467)
T ss_dssp --------EEEEESSHHHHHHHHHHHHHHHHHHT-TC---CSSCEEEE-SSCCHHHHHHHHHTTC---EEEECBCGGGGC
T ss_pred --------cEEEcCCcHHHHHHHHHHHHHhhccC-CC---ccceEEEe-ccccchhhHHHhccCC---ceeccccccccc
Confidence 58999999999999999887632111 11 11115555 566 455667788888 777765431
Q ss_pred -C----CCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcc-ccc---cChhHHHHHHHHhCCeEEccccccc-ccccC
Q 010125 227 -S----SSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAI-TAV---DPLKPLCDVAKQFGIWVHVDAAYAG-SACIC 296 (517)
Q Consensus 227 -~----~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~-G~i---dpl~eI~~i~~~~gi~lhvDaA~g~-~~~~~ 296 (517)
+ .++.+|+++|+++|++.. ...+.+|+++.+++++ |.+ +++++|+++|++||+|+|+|++++. +..+.
T Consensus 157 ~~~~~~~~~~~d~~~le~~i~~~~--~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~ 234 (467)
T 1ax4_A 157 SETYDDWKGDFDIKKLKENIAQHG--ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFI 234 (467)
T ss_dssp TTSCCTTTTCBCHHHHHHHHHHHC--GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHH
T ss_pred ccccCCcccccCHHHHHHHHHhcC--CCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhc
Confidence 0 135799999999998631 0123478888888898 665 5688999999999999999998654 11110
Q ss_pred c----ccccc-ccCC-----CCCCeeeeccccccCCCCcceEEEEeCc-hhHHhhhcCCccccCCccccccccccCCCcc
Q 010125 297 P----EFRHF-IDGV-----EGADSFSLNAHKWFFATLDCCCLWVKDP-RALVSSLSTNPEYLKNKATESMQVVDYKDWQ 365 (517)
Q Consensus 297 ~----~~~~~-~~g~-----~~aDsi~~~~hK~l~~p~~~g~l~~~~~-~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~ 365 (517)
. .+... +..+ ..+|++++++||+++.|.| |+++.+++ +...........+ ... .
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~d~~~l~~~~~~~~~~~--~~~------------~ 299 (467)
T 1ax4_A 235 KARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIG-GLVAIRDNEEIFTLARQRCVPM--EGF------------V 299 (467)
T ss_dssp HHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSC-EEEEESSCHHHHHHHHHHHHHH--TCS------------T
T ss_pred cccccccCCCchhhhhhhhccccceEEEeccccCCCCcc-eEEEeCCHHHHHHHHHhhcccc--ccc------------c
Confidence 0 00000 0001 3588999999999988744 56666645 4432211110001 000 0
Q ss_pred ccCCCCCCch-HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCeeEEEEEecCCCcchhhhhhhhhc
Q 010125 366 ITLSRRFRSL-KLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVN 444 (517)
Q Consensus 366 ~~~sr~~~al-~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~ 444 (517)
...+.....+ .+..++...-. .+.+++..++++++.+.|++ ++++++.+.....+.+...... +.
T Consensus 300 ~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~----------~~ 365 (467)
T 1ax4_A 300 TYGGLAGRDMAAMVQGLEEGTE---EEYLHYRIGQVKYLGDRLRE-AGIPIQYPTGGHAVFVDCKKLV----------PQ 365 (467)
T ss_dssp TTTTCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHH-TTCCBCSSCCSSEEEEESTTTC----------TT
T ss_pred ccCCccchHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHh-CCCCcccCCCceEEEEehhhhc----------cc
Confidence 0001110111 11113332211 23445556778889999987 5777664444455555521100 00
Q ss_pred cccchHHHHHHHHHHHHHHH-HhcCcEEEeeeeE-------------CCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 010125 445 CLLSEEEQINEFNRELLESI-NASGKAYMTHAVL-------------GGIYAIRFATGATLTEKRHVVVAWTVVQQHLEA 510 (517)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~~l-~~~g~~~~~~~~~-------------~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~ 510 (517)
.... +....++.++| .+.|+.+.+...+ .+..++|+++....++++|++++++.|+++.++
T Consensus 366 ---~~~~--~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 440 (467)
T 1ax4_A 366 ---IPGD--QFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEK 440 (467)
T ss_dssp ---SCGG--GCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHH
T ss_pred ---cccC--CCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccccCCHHHHHHHHHHHHHHHHh
Confidence 0000 01134567777 6778655441111 013689999864458899999999999988776
Q ss_pred H
Q 010125 511 F 511 (517)
Q Consensus 511 l 511 (517)
+
T Consensus 441 ~ 441 (467)
T 1ax4_A 441 F 441 (467)
T ss_dssp H
T ss_pred h
Confidence 4
No 144
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.87 E-value=3.5e-22 Score=203.30 Aligned_cols=319 Identities=12% Similarity=0.108 Sum_probs=203.4
Q ss_pred HHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhc
Q 010125 107 AGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIG 186 (517)
Q Consensus 107 ~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g 186 (517)
+..+.+.+...+... .|..++...++|+.+ ++++|.+ .+++++|||+|+..++.+++-
T Consensus 15 ~~~v~~a~~~~~~~~--~~~~~~~~~~l~~~l----a~~~~~~---------~~~~~~sGt~al~~al~~~~~------- 72 (367)
T 3nyt_A 15 KDKIDAGIQRVLRHG--QYILGPEVTELEDRL----ADFVGAK---------YCISCANGTDALQIVQMALGV------- 72 (367)
T ss_dssp HHHHHHHHHHHHHHC--CCSSCHHHHHHHHHH----HHHHTCS---------EEEEESCHHHHHHHHHHHTTC-------
T ss_pred CHHHHHHHHHHHhcC--CccCChHHHHHHHHH----HHHhCCC---------cEEEeCCHHHHHHHHHHHhCC-------
Confidence 334445555444332 344566666666554 4555654 479999999999988877621
Q ss_pred ccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 187 RENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 187 ~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
.+++.|+++..+|.++..+++..|+ +++.++++++ ++.+|+++|+++|+++++ +|+ +++++|..
T Consensus 73 ---~~gd~Vi~~~~~~~~~~~~~~~~G~---~~~~~~~~~~-~~~~d~~~l~~~i~~~~~------~v~---~~~~~G~~ 136 (367)
T 3nyt_A 73 ---GPGDEVITPGFTYVATAETVALLGA---KPVYVDIDPR-TYNLDPQLLEAAITPRTK------AII---PVSLYGQC 136 (367)
T ss_dssp ---CTTCEEEEESSSCTHHHHHHHHTTC---EEEEECBCTT-TCSBCGGGTGGGCCTTEE------EEC---CBCGGGCC
T ss_pred ---CCcCEEEECCCccHHHHHHHHHcCC---EEEEEecCCc-cCCcCHHHHHHhcCcCCc------EEE---eeCCccCh
Confidence 1566789999999999999999999 9999999863 489999999999865432 444 66789999
Q ss_pred cChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeec--cccccCCCCcceEEEEeCchhHHhhhcCC
Q 010125 267 DPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLN--AHKWFFATLDCCCLWVKDPRALVSSLSTN 344 (517)
Q Consensus 267 dpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~--~hK~l~~p~~~g~l~~~~~~~~~~~~~~~ 344 (517)
.|+++|.++|++||+++|+|++|+.+...... . . +. ..|.++++ +||+++.+..+|+++++++..........
T Consensus 137 ~~~~~i~~la~~~~~~li~D~a~~~g~~~~~~--~-~-~~-~~di~~~Sf~~~K~l~~~g~gg~~~~~~~~l~~~~~~~~ 211 (367)
T 3nyt_A 137 ADFDAINAIASKYGIPVIEDAAQSFGASYKGK--R-S-CN-LSTVACTSFFPSAPLGCYGDGGAIFTNDDELATAIRQIA 211 (367)
T ss_dssp CCHHHHHHHHHHTTCCBEEECTTTTTCEETTE--E-T-TS-SSSEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHcCCEEEEECccccCCeECCe--e-c-cC-CCCEEEEECCCCCcCCCcCceeEEEeCCHHHHHHHHHHH
Confidence 99999999999999999999999755432211 1 1 11 12777777 59999873347777776665432211100
Q ss_pred ccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCC----
Q 010125 345 PEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCH---- 420 (517)
Q Consensus 345 ~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~---- 420 (517)
..... ..+.......+.+...+..++++.. .+.++++.++..++++++.+.|++. ++++...+.
T Consensus 212 ----~~g~~-----~~~~~~~~g~~~~~~~~~aa~~~~~--l~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~ 279 (367)
T 3nyt_A 212 ----RHGQD-----RRYHHIRVGVNSRLDTLQAAILLPK--LEIFEEEIALRQKVAAEYDLSLKQV-GIGTPFIEVNNIS 279 (367)
T ss_dssp ----BTTEE-----ETTEECSCCCBCCCCHHHHHHHHHH--HHTHHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCTTEEC
T ss_pred ----hcCCC-----cCceeeccCcCCCccHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhccC-CeeccCCCCCCce
Confidence 00000 0000001112223344544444443 3556778888899999999999987 455432221
Q ss_pred -eeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeee--------EC------------C
Q 010125 421 -FAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAV--------LG------------G 479 (517)
Q Consensus 421 -~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~--------~~------------g 479 (517)
...+.+... . ...+.+.|.++|+....... +. .
T Consensus 280 ~~~~~~~~~~-~-------------------------~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (367)
T 3nyt_A 280 VYAQYTVRMD-N-------------------------RESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAA 333 (367)
T ss_dssp CCSSEEEECS-S-------------------------HHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHH
T ss_pred eeEEEEEEeC-C-------------------------HHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHH
Confidence 112333322 1 24566677777864321110 00 1
Q ss_pred EeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 010125 480 IYAIRFATGATLTEKRHVVVAWTVVQQH 507 (517)
Q Consensus 480 ~~~lR~~~~~~~t~~~di~~l~~~l~~~ 507 (517)
...+|+.+ ++.++++||+++++.|++.
T Consensus 334 ~~~l~lp~-~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 334 TQVMSLPM-HPYLDTASIKIICAALTNL 360 (367)
T ss_dssp HHEEEECC-CTTCCHHHHHHHHHHHHC-
T ss_pred hCeEEccC-CCCCCHHHHHHHHHHHHHH
Confidence 35799987 6889999999999988754
No 145
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.87 E-value=4.3e-21 Score=198.56 Aligned_cols=307 Identities=12% Similarity=0.083 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchH-HHHHHH
Q 010125 132 TELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCA-LQKAAQ 210 (517)
Q Consensus 132 ~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s-~~kaa~ 210 (517)
..+++...+++++++|.+.. .++++|||+|+..++.++.. +++.|++++.+|.+ +...+.
T Consensus 77 ~~~~~~a~~~~~~~~~~~~~--------~v~~~~Gs~a~~~al~~~~~-----------~gd~Vi~~~~~~~~~~~~~~~ 137 (425)
T 3ecd_A 77 DEVEALAIERVKRLFNAGHA--------NVQPHSGAQANGAVMLALAK-----------PGDTVLGMSLDAGGHLTHGAK 137 (425)
T ss_dssp CHHHHHHHHHHHHHHTCSEE--------ECCCSSHHHHHHHHHHHHCC-----------TTCEEEEECC-----------
T ss_pred HHHHHHHHHHHHHHhCCCCc--------eeecCchHHHHHHHHHHccC-----------CCCEEEEcccccccceecchh
Confidence 35666666889999998753 35688999999888776532 56678888899988 323333
Q ss_pred --HcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEcccc
Q 010125 211 --IVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAA 288 (517)
Q Consensus 211 --~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA 288 (517)
..|.+. .++.++.++ +++.+|+++|++++++.. +.+|+++.+++ |...++++|.++|++||+++|+|++
T Consensus 138 ~~~~g~~~-~~~~~~~~~-~~~~~d~~~l~~~i~~~~-----~~~v~~~~~~~--~~~~~l~~i~~l~~~~~~~li~De~ 208 (425)
T 3ecd_A 138 PALSGKWF-NALQYGVSR-DTMLIDYDQVEALAQQHK-----PSLIIAGFSAY--PRKLDFARFRAIADSVGAKLMVDMA 208 (425)
T ss_dssp -------C-EEEEECCCT-TTSSCCHHHHHHHHHHHC-----CSEEEEECSCC--CSCCCHHHHHHHHHHHTCEEEEECG
T ss_pred hhhcccce-eeeecCCCc-ccCccCHHHHHHHHhhcC-----CcEEEEccccC--CCcCCHHHHHHHHHHcCCEEEEECc
Confidence 445411 344555553 357999999999997431 23666665444 7889999999999999999999999
Q ss_pred cccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCccccCCccccccccccCCCccccC
Q 010125 289 YAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITL 368 (517)
Q Consensus 289 ~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~ 368 (517)
|+.+.......... +..+|+++.++||++.+|. +|+++.+++... +.+.. +.... ...
T Consensus 209 ~~~g~~~~~~~~~~---~~~~di~~~s~sK~l~g~~-~g~~~~~~~~~~-~~~~~---~~~~~--------------~~~ 266 (425)
T 3ecd_A 209 HIAGVIAAGRHANP---VEHAHVVTSTTHKTLRGPR-GGFVLTNDEEIA-KKINS---AVFPG--------------LQG 266 (425)
T ss_dssp GGHHHHHTTSSCCG---GGTCSEEEEESSGGGCCCS-CEEEEESCHHHH-HHHHH---HHC-------------------
T ss_pred ChHhhhhcccccCc---hhcCcEEEecCCcccCCCC-cEEEEeCCHHHH-HHHHh---hhCcc--------------ccC
Confidence 76655433222111 2358999999999997765 588777655332 22211 11100 000
Q ss_pred CC-CCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC-CCeeEEEEEecCCCcchhhhhhhhhccc
Q 010125 369 SR-RFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFP-CHFAVVCFRVSPSPVLMDKLKTKYVNCL 446 (517)
Q Consensus 369 sr-~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~-~~~~~v~f~~~~~~~~~~~~~~~~~~~~ 446 (517)
+. .....+++.++.....+++.++.++..++++++.+.|++. +++++.+ ...+++.+.+.+..
T Consensus 267 ~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-------------- 331 (425)
T 3ecd_A 267 GPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG-GVDLVTGGTDNHLLLVDLRPKG-------------- 331 (425)
T ss_dssp CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGT--------------
T ss_pred CccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC-CCeeccCCCCceEEEEEeCCCC--------------
Confidence 00 0122344555555555778889999999999999999885 7888753 35566666664321
Q ss_pred cchHHHHHHHHHHHHHHHHhcCcEEEeee------eECCEeEEEEEecC---CCCcHHHHHHHHHHHHHHHHHH
Q 010125 447 LSEEEQINEFNRELLESINASGKAYMTHA------VLGGIYAIRFATGA---TLTEKRHVVVAWTVVQQHLEAF 511 (517)
Q Consensus 447 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~------~~~g~~~lR~~~~~---~~t~~~di~~l~~~l~~~~~~l 511 (517)
.....+.+.|.+.|+...... ...+..++|+++.. ...++++++++++.|+++.++.
T Consensus 332 --------~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 332 --------LKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp --------CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred --------CCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence 012455666667786543221 01123579998532 2335889999999999887665
No 146
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.86 E-value=6.5e-21 Score=198.82 Aligned_cols=327 Identities=9% Similarity=0.058 Sum_probs=197.6
Q ss_pred cccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhccc------CCCC--eE
Q 010125 123 FNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRE------NISK--LI 194 (517)
Q Consensus 123 ~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~------~~~~--~~ 194 (517)
..|....+..++++++++|+.+.+|++... ..+++|+|||+|+..++.+.... |.. ...+ ..
T Consensus 77 ~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~-----~~i~~t~G~t~al~~~~~~l~~~-----gd~~~~~~~~~~g~~~~ 146 (444)
T 3if2_A 77 ANYSNPQGDSAFIDALVGFFNRHYDWNLTS-----ENIALTNGSQNAFFYLFNLFGGA-----FVNEHSQDKESKSVDKS 146 (444)
T ss_dssp HSCCCTTCCHHHHHHHHHHHHHHHCCCCCG-----GGEEEESSHHHHHHHHHHHSSEE-----EECC-------CEEEEE
T ss_pred hccCCCCCCHHHHHHHHHHHHhhcCCCCCH-----HHEEEecCcHHHHHHHHHHHhCC-----Cccccccccccccccce
Confidence 456666678899999999999988865321 37999999999998887765321 110 0000 04
Q ss_pred EEeC-CCCchHHHHHH------HHcCCCCCCEEEEecCCC-C--CcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccc
Q 010125 195 VYGS-DQTHCALQKAA------QIVGIDVKNFRAIKTTKS-S--SYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAIT 264 (517)
Q Consensus 195 v~~s-~~~H~s~~kaa------~~~G~g~~~v~~vp~d~~-~--~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G 264 (517)
|+++ .++|..+..++ ...|. .++.+|++.+ + ++.+|+++|+++++.... .+.+|+++.+++++|
T Consensus 147 vi~~~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~---~~~~v~i~~p~nptG 220 (444)
T 3if2_A 147 ILLPLTPEYIGYSDVHVEGQHFAAVLP---HIDEVTHDGEEGFFKYRVDFEALENLPALKEG---RIGAICCSRPTNPTG 220 (444)
T ss_dssp EEESSSSCCGGGTTCCSSSCCEEECCC---EEEEEEETTEEEEEEEECCHHHHHTCHHHHTT---CEEEEEEESSCTTTC
T ss_pred EEEeCCCCccchhhcccccchhhccCc---eEEecccccccCccccCCCHHHHHHHHHhcCC---CceEEEeCCCCCCCC
Confidence 5544 67777665543 22344 7778887641 1 257999999998543111 234788888999999
Q ss_pred cccC---hhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhh
Q 010125 265 AVDP---LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSL 341 (517)
Q Consensus 265 ~idp---l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~ 341 (517)
.+-| +++|+++|++||+++|+|++|+.+.... .+..........+.++.++||++..+.++|+++.. +.. ...+
T Consensus 221 ~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~-~~l-~~~~ 297 (444)
T 3if2_A 221 NVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNI-IYSDAHLNWDNNTILCFSLSKIGLPGMRTGIIVAD-AKV-IEAV 297 (444)
T ss_dssp CCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCC-BCSCCCCCCCTTEEEEEESTTTTCGGGCCEEEECC-HHH-HHHH
T ss_pred CcCCHHHHHHHHHHHHHCCCEEEEECCCCCccccc-ccccccccCCCCEEEEechhhccCCCCceEEEEEC-HHH-HHHH
Confidence 9988 8899999999999999999997532111 11111111235678889999986666778877653 322 2222
Q ss_pred cCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHH----HHH-HHHHHHHHHHHHHHHHhc-CC--Ce
Q 010125 342 STNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVAN----LRH-FLRSHVNMAKLFERLVSG-DK--RF 413 (517)
Q Consensus 342 ~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g----~~~-~i~~~~~~a~~l~~~l~~-~~--~~ 413 (517)
....... +.....+...++...+.... ..+ +.++..++.+++.+.|.+ ++ ++
T Consensus 298 ~~~~~~~--------------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 357 (444)
T 3if2_A 298 SAMNAVV--------------------NLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPL 357 (444)
T ss_dssp HHHHHHH--------------------HSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSE
T ss_pred HHHHHhc--------------------cCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Confidence 1100000 00112233333333221111 122 344555666666666654 44 45
Q ss_pred EEecCCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeEC----------CEeEE
Q 010125 414 EIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLG----------GIYAI 483 (517)
Q Consensus 414 ~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~----------g~~~l 483 (517)
++..+....++.+.+..... ...++.+.|.++|+...++..+. +..++
T Consensus 358 ~~~~~~~g~~~~~~~~~~~~----------------------~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~i 415 (444)
T 3if2_A 358 MIHKPEGAIFLWLWFKDLPI----------------------STLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECI 415 (444)
T ss_dssp EEECCCBSSEEEEEETTCSS----------------------CHHHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEE
T ss_pred eEecCCccEEEEEEcCCCCC----------------------CHHHHHHHHHHCCeEEecchhhcCCCCCcccccCCCeE
Confidence 66544444455556643110 12456667777886554433221 12589
Q ss_pred EEEecCCCCcHHHHHHHHHHHHHHHHHHHh
Q 010125 484 RFATGATLTEKRHVVVAWTVVQQHLEAFQS 513 (517)
Q Consensus 484 R~~~~~~~t~~~di~~l~~~l~~~~~~l~~ 513 (517)
|+++.. ++++|++++++|.++.+++..
T Consensus 416 Ris~~~---~~e~i~~~l~~l~~~~~~~~~ 442 (444)
T 3if2_A 416 RMSIAA---DEQTLIDGIKVIGEVVRELYD 442 (444)
T ss_dssp EEESSS---CHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeC---CHHHHHHHHHHHHHHHHHHHc
Confidence 999853 788999999999999887764
No 147
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.86 E-value=5.1e-21 Score=195.49 Aligned_cols=308 Identities=11% Similarity=0.058 Sum_probs=197.0
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHH-HHHHHHHhcccCCCCeEEEeCCCCchHHH
Q 010125 128 SPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAA-RDRVLNKIGRENISKLIVYGSDQTHCALQ 206 (517)
Q Consensus 128 sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~a-r~~~~~~~g~~~~~~~~v~~s~~~H~s~~ 206 (517)
+|...++|+++ +++++|... ..++++|||+|+..++.+. .. +++.|+++..+|.++.
T Consensus 35 ~~~~~~l~~~~---~a~~~g~~~--------~~v~~~sgt~al~~al~~l~~~-----------~Gd~Vi~~~~~~~~~~ 92 (377)
T 3ju7_A 35 GPINQRFEQTI---MSGFFQNRG--------AVTTVANATLGLMAAIQLKKRK-----------KGKYALMPSFTFPATP 92 (377)
T ss_dssp CHHHHHHHHHH---HHHTSTTCS--------EEEEESCHHHHHHHHHHHHSCT-----------TCCEEEEESSSCTHHH
T ss_pred CHHHHHHHHHH---HHHHhCCCC--------eEEEeCCHHHHHHHHHHHcCCC-----------CcCEEEECCCCcHHHH
Confidence 57777777654 156666221 5799999999998887764 21 6677899999999999
Q ss_pred HHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHH-HHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEc
Q 010125 207 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQI-NSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHV 285 (517)
Q Consensus 207 kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i-~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhv 285 (517)
.++...|+ +++.+++++ +++.+|+++|+++| +++. .+.+|+ +++++|.+.|+++|+++|+ ||+++|+
T Consensus 93 ~~~~~~G~---~~~~v~~~~-~~~~~d~~~l~~~i~~~~~----~tk~v~---~~~~~G~~~~~~~i~~la~-~~~~vi~ 160 (377)
T 3ju7_A 93 LAAIWCGL---EPYFIDISI-DDWYMDKTVLWDKIEELKE----EVAIVV---PYATFGSWMNLEEYEELEK-KGVPVVV 160 (377)
T ss_dssp HHHHHTTC---EEEEECBCT-TTCSBCHHHHHHHHHHHGG----GEEEEC---CBCGGGBCCCCHHHHHHHH-TTCCBEE
T ss_pred HHHHHcCC---EEEEEecCC-ccCCcCHHHHHHHHhcCCC----CceEEE---EECCCCCccCHHHHHHHHh-cCCEEEE
Confidence 99999999 999999975 36899999999998 4440 012444 4567899999999999999 9999999
Q ss_pred ccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCccccCCccccccccccCCCcc
Q 010125 286 DAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQ 365 (517)
Q Consensus 286 DaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~ 365 (517)
|+||+.+..... +..-.....++.+++++||+++.+ ..|+++++++....+..... .+ +.. . .+. .
T Consensus 161 D~a~a~g~~~~~--~~~g~~~~d~~~~S~~~~K~l~~g-~gG~~~~~~~~l~~~~~~~~-~~---g~~---~--~~~--~ 226 (377)
T 3ju7_A 161 DAAPGFGLMNGG--MHYGQDFSGMIIYSFHATKPFGIG-EGGLIYSKNEEDIQRIKRMG-NF---GFD---T--NRE--C 226 (377)
T ss_dssp ECTTCTTCEETT--EETTTTCSSEEEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHHT-BT---TBC---T--TSC--B
T ss_pred ECCCccCCeECC--EeccCCCCcEEEEECCCCCcCCCC-CcEEEEECCHHHHHHHHHHH-hc---CCC---C--CCc--e
Confidence 999976543211 111011234566777789999874 56777777665432211110 00 000 0 000 1
Q ss_pred ccCCCC--CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEE-ecCCC-----eeEEEEEecCCCcchhh
Q 010125 366 ITLSRR--FRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEI-VFPCH-----FAVVCFRVSPSPVLMDK 437 (517)
Q Consensus 366 ~~~sr~--~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l-~~~~~-----~~~v~f~~~~~~~~~~~ 437 (517)
...+.+ ...+..+..+. +.+.+.+++++..++++++.+.|++++++.+ +.++. ...+.++....
T Consensus 227 ~~~g~~~~~~~~~aa~~~~--~l~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 298 (377)
T 3ju7_A 227 TMMGFNCKMSEYAAAIGIA--TMKKWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPEE------ 298 (377)
T ss_dssp CSSCCBCCCCHHHHHHHHH--HHHTHHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCTT------
T ss_pred eeccccCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeCCh------
Confidence 112222 33344444433 4577888999999999999999998865421 11111 11234444321
Q ss_pred hhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeee--e------EC-------------CEeEEEEEecCCCCcHHH
Q 010125 438 LKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHA--V------LG-------------GIYAIRFATGATLTEKRH 496 (517)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~--~------~~-------------g~~~lR~~~~~~~t~~~d 496 (517)
....++.+.|.++|+....+. . +. ....||+.+ ++.++++|
T Consensus 299 -----------------~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~-~~~~t~~d 360 (377)
T 3ju7_A 299 -----------------VRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPL-WEGMTKEI 360 (377)
T ss_dssp -----------------SCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECC-CTTCCHHH
T ss_pred -----------------hhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCC-CCCCCHHH
Confidence 013567788888886432211 0 00 135799987 67889999
Q ss_pred HHHHHHHHHHHHH
Q 010125 497 VVVAWTVVQQHLE 509 (517)
Q Consensus 497 i~~l~~~l~~~~~ 509 (517)
++++++.|+++..
T Consensus 361 i~~v~~~l~~~~~ 373 (377)
T 3ju7_A 361 VEQIVICLGQKVV 373 (377)
T ss_dssp HHHHHHHHTC---
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987654
No 148
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.86 E-value=5.4e-20 Score=186.07 Aligned_cols=302 Identities=11% Similarity=0.022 Sum_probs=189.9
Q ss_pred ccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCch
Q 010125 124 NWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHC 203 (517)
Q Consensus 124 ~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~ 203 (517)
.|...+...++ .+++++++|.+. .++++|||+|+..++.++... | .+.+|+++...|+
T Consensus 43 ~~~~~~~~~~l----~~~la~~~~~~~---------~i~~~~g~~a~~~a~~~~~~~-----g----~~~vvi~~~~~~~ 100 (359)
T 3pj0_A 43 IYGNGAVIEDF----ETKIAKILGKQS---------AVFFPSGTMAQQIALRIWADR-----K----ENRRVAYHPLSHL 100 (359)
T ss_dssp BTTBSHHHHHH----HHHHHHHHTCSE---------EEEESCHHHHHHHHHHHHHHH-----H----TCCEEEECTTCHH
T ss_pred cccCCHHHHHH----HHHHHHHhCCCc---------EEEeCCHHHHHHHHHHHHHhc-----C----CCcEEEEecccee
Confidence 34444555444 466777778753 367789999999888877654 1 2336777878887
Q ss_pred HHHHH---HHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcc-ccccChhHH---HHHH
Q 010125 204 ALQKA---AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAI-TAVDPLKPL---CDVA 276 (517)
Q Consensus 204 s~~ka---a~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~-G~idpl~eI---~~i~ 276 (517)
+.... +...|+ +++.+|.+ ++.+|+++|+++ .++ +.+|+++.+++++ |.+.|.+++ +++|
T Consensus 101 ~~~~~~~~~~~~g~---~~~~v~~~---~~~~d~~~l~~~-~~~------~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~ 167 (359)
T 3pj0_A 101 EIHEQDGLKELQQI---TPLLLGTA---NQLLTIDDIKSL-REP------VSSVLIELPQREIGGQLPAFEELEKISEYC 167 (359)
T ss_dssp HHSSTTHHHHHHCC---EEEECSCT---TSCCCHHHHHTC-SSC------CSEEEEESSBGGGTSBCCCHHHHHHHHHHH
T ss_pred eehhcchHHHhcCc---eEEecCCc---CCCcCHHHHHhc-cCC------ceEEEEEecccCCCcccCCHHHHHHHHHHH
Confidence 76532 255688 88888863 568999999987 322 3478888787776 788665555 9999
Q ss_pred HHhCCeEEcccccccccccCc--cccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCccccCCcccc
Q 010125 277 KQFGIWVHVDAAYAGSACICP--EFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATE 354 (517)
Q Consensus 277 ~~~gi~lhvDaA~g~~~~~~~--~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~ 354 (517)
++||+|+|+|++|..+..... ...... ..+|++++++||+++.|.+ |++ +.+++... .+..........
T Consensus 168 ~~~~~~li~D~a~~~~~~~~~~~~~~~~~---~~~d~~~~s~sK~~~~~~g-g~~-~~~~~l~~-~~~~~~~~~~~~--- 238 (359)
T 3pj0_A 168 HEQGISLHLDGARLWEITPFYQKSAEEIC---ALFDSVYVSFYKGIGGIAG-AIL-AGNDDFVQ-EAKIWKRRYGGD--- 238 (359)
T ss_dssp HHHTCEEEEEETTCGGGHHHHTCCHHHHH---TTCSEEEEESSSTTCCSSC-EEE-EECHHHHH-HHHHHHHHTTCC---
T ss_pred HHcCCEEEEECcchhcchhhhCCCHHHhh---ccCCEEEEeccccCCCcce-EEE-ECCHHHHH-HHHHHHHHhCCC---
Confidence 999999999999864432111 111111 3689999999999998855 444 44554332 221100000000
Q ss_pred ccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe-cCCCeeEEEEEecCCCc
Q 010125 355 SMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIV-FPCHFAVVCFRVSPSPV 433 (517)
Q Consensus 355 ~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~-~~~~~~~v~f~~~~~~~ 433 (517)
. +. ....+.....+++. ..+++++..++++++.+.|+++|++++. .++..+.+.+++....
T Consensus 239 ------~--~~----~~~~~~a~~~~l~~-----~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~- 300 (359)
T 3pj0_A 239 ------L--IS----LYPYILSADYYFEK-----RIGKMAEYFEAAKGLAERFNSCSGVKTVPEVPVSNMFHVYFENSA- 300 (359)
T ss_dssp ------C--SC----CHHHHHHHHHHHHH-----HGGGHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEESSCH-
T ss_pred ------c--ch----hHHHHHHHHHHHHH-----HHHHhHHHHHHHHHHHHHHhhCCCceeeccCCcceEEEEEecCcc-
Confidence 0 00 00011111222221 1245666788899999999999999986 4566777888775431
Q ss_pred chhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeee--ECCEeEEEEEecCC--CCcHHHHHHHHHHHHHH
Q 010125 434 LMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAV--LGGIYAIRFATGAT--LTEKRHVVVAWTVVQQH 507 (517)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~--~~g~~~lR~~~~~~--~t~~~di~~l~~~l~~~ 507 (517)
......+.+.|.++|+.+.++.. ..+..++|+++... ..+.++++++++.|.+.
T Consensus 301 --------------------~~~~~~l~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 301 --------------------DEIGAILTKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp --------------------HHHHHHHHHHHHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred --------------------chhHHHHHHHHHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 12345677788888876544322 35678999998533 24677788887777653
No 149
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=99.78 E-value=1.3e-23 Score=215.76 Aligned_cols=332 Identities=11% Similarity=0.027 Sum_probs=216.2
Q ss_pred HHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcc
Q 010125 108 GFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGR 187 (517)
Q Consensus 108 ~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~ 187 (517)
..+.+.+...+......|... ..++++++.+|+.+.+|++... ...++|+||++|+..++.+..+
T Consensus 47 ~~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~-----~~v~~~~g~~~a~~~~~~~~~~-------- 111 (392)
T 3b1d_A 47 PEVKQAIHDYAEQLVYGYTYA--SDELLQAVLDWEKSEHQYSFDK-----EDIVFVEGVVPAISIAIQAFTK-------- 111 (392)
Confidence 345555555554433445432 7789999999999988853221 2689999999999888777643
Q ss_pred cCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCC-CCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 188 ENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTK-SSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 188 ~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~-~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
++..|++..++|.++..+++..|. +++.+|.+. ++++.+|+++|++++++.. +.+|+++.+++++|.+
T Consensus 112 ---~gd~vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~g~~~~d~~~l~~~l~~~~-----~~~v~~~~~~nptG~~ 180 (392)
T 3b1d_A 112 ---EGEAVLINSPVYPPFARSVRLNNR---KLVSNSLKEENGLFQIDFEQLENDIVEND-----VKLYLLCNPHNPGGRV 180 (392)
Confidence 445688888999999999999998 899999853 2346799999999997321 2256678899999998
Q ss_pred cC---hhHHHHHHHHhCCeEEcccccccccccCcccccccc---CCCCCCeeeeccccccC-CCCcceEEEEeCchhHHh
Q 010125 267 DP---LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFID---GVEGADSFSLNAHKWFF-ATLDCCCLWVKDPRALVS 339 (517)
Q Consensus 267 dp---l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~---g~~~aDsi~~~~hK~l~-~p~~~g~l~~~~~~~~~~ 339 (517)
-| +++|+++|++||+++++|++|+.+............ .....+.+..+++|+++ ....+|+++++++....
T Consensus 181 ~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~- 259 (392)
T 3b1d_A 181 WEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCA- 259 (392)
Confidence 54 999999999999999999999876543211111111 11234567788999997 55678988876553322
Q ss_pred hhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEecC
Q 010125 340 SLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSG-DKRFEIVFP 418 (517)
Q Consensus 340 ~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~-~~~~~l~~~ 418 (517)
.+...... +++..........+..+++. +.+.++++.++..++++++.+.|++ +|++++. +
T Consensus 260 ~~~~~~~~----------------~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~ 321 (392)
T 3b1d_A 260 QFKHQQLV----------------NNHHEVSSLGYIATETAYRY-GKPWLVALKAVLEENIQFAVEYFAQEAPRLKVM-K 321 (392)
Confidence 22111000 00001111111222223331 3456677778888899999999987 7888765 4
Q ss_pred CCeeEEE-EEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHH-hcCcEEEeeeeEC--CEeEEEEEecCCCCcH
Q 010125 419 CHFAVVC-FRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESIN-ASGKAYMTHAVLG--GIYAIRFATGATLTEK 494 (517)
Q Consensus 419 ~~~~~v~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--g~~~lR~~~~~~~t~~ 494 (517)
+..+++. +.+... +....++.+.|. +.|+.+.++..+. +..++|++++. ++
T Consensus 322 ~~~~~~~~i~~~~~----------------------~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~---~~ 376 (392)
T 3b1d_A 322 PQGTYLIWLDFSDY----------------------GLTDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIAA---PK 376 (392)
Confidence 5555554 444321 011345666675 5677654443332 46789999853 46
Q ss_pred HHHHHHHHHHHHHHH
Q 010125 495 RHVVVAWTVVQQHLE 509 (517)
Q Consensus 495 ~di~~l~~~l~~~~~ 509 (517)
++|++++++|.++.+
T Consensus 377 e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 377 SLVEEICKRIVCCLP 391 (392)
Confidence 789999998887653
No 150
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.86 E-value=1.7e-20 Score=195.16 Aligned_cols=282 Identities=13% Similarity=0.128 Sum_probs=189.1
Q ss_pred HHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHH----HHH
Q 010125 136 NIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKA----AQI 211 (517)
Q Consensus 136 ~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~ka----a~~ 211 (517)
.++.+++++++|.+ ..+++++|++|+..++.+... +++.|+++...|.+.... ++.
T Consensus 117 ~~l~~~lA~l~g~~---------~~v~~~sG~~Ai~~al~~l~~-----------~Gd~Vi~~~~~y~~~~~~~~~~~~~ 176 (445)
T 1qgn_A 117 VVLEEKISALEGAE---------STLLMASGMCASTVMLLALVP-----------AGGHIVTTTDCYRKTRIFIETILPK 176 (445)
T ss_dssp HHHHHHHHHHHTCS---------EEEEESCHHHHHHHHHHHHSC-----------SSCEEEEETTSCHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHhCCC---------cEEEeCCHHHHHHHHHHHHhC-----------CCCEEEEcCCCchhHHHHHHHHHHH
Confidence 34556677777775 246666677999888775422 456788888999887664 455
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEccccccc
Q 010125 212 VGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAG 291 (517)
Q Consensus 212 ~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~ 291 (517)
.|+ +++.+|.+ |+++|+++|++++ +.+|+++.++|++|.+.|+++|+++|++||+++|+|++|+.
T Consensus 177 ~G~---~v~~v~~~-------d~~~l~~ai~~~t-----v~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~ 241 (445)
T 1qgn_A 177 MGI---TATVIDPA-------DVGALELALNQKK-----VNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFAT 241 (445)
T ss_dssp GTC---EEEEECSS-------CHHHHHHHHHHSC-----EEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTC
T ss_pred cCC---EEEEeCCC-------CHHHHHHHhccCC-----CCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcc
Confidence 688 88888753 8999999998654 23788899999999999999999999999999999999986
Q ss_pred ccccCccccccccCCCCCCeeeeccccccCCCC--cceEEEEeCchhHHhhhcCCccccCCccccccccccCCCccccCC
Q 010125 292 SACICPEFRHFIDGVEGADSFSLNAHKWFFATL--DCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLS 369 (517)
Q Consensus 292 ~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~--~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~s 369 (517)
+....+ . . .++|.++.++||+++.+. .+|+++.++. ... .+. .+.. . .+
T Consensus 242 ~~~~~~-~-~-----~g~Div~~S~sK~~gg~gd~~~G~l~~~~~-l~~-~l~---~~~~---------------~--~g 292 (445)
T 1qgn_A 242 PLNQKA-L-A-----LGADLVLHSATKFLGGHNDVLAGCISGPLK-LVS-EIR---NLHH---------------I--LG 292 (445)
T ss_dssp TTTCCT-T-T-----TTCSEEEECTTTTTTCSSSCCCEEEEECHH-HHH-HHH---HHHH---------------H--HC
T ss_pred cccCCc-c-c-----cCCEEEEECCcccccccccceEEEEEECHH-HHH-HHH---HHHH---------------H--hC
Confidence 653322 1 1 268999999999998543 2888887543 222 221 0000 0 00
Q ss_pred CCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCe-EEecC-----C-----------CeeEEEEEecCCC
Q 010125 370 RRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRF-EIVFP-----C-----------HFAVVCFRVSPSP 432 (517)
Q Consensus 370 r~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~-~l~~~-----~-----------~~~~v~f~~~~~~ 432 (517)
-....+..|.+++ +.+.+..++++..++++++.+.|++.|++ .+..+ | ..++++|.+.+.
T Consensus 293 ~~~~~~~a~~~~~--~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~- 369 (445)
T 1qgn_A 293 GALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGD- 369 (445)
T ss_dssp CCCCHHHHHHHHH--HGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSC-
T ss_pred CCCCHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCC-
Confidence 1123345566554 44567778888899999999999999988 44433 1 367889988643
Q ss_pred cchhhhhhhhhccccchHHHHHHHHHHHHHHHHhc------CcEE---Eeeee------------ECC--EeEEEEEecC
Q 010125 433 VLMDKLKTKYVNCLLSEEEQINEFNRELLESINAS------GKAY---MTHAV------------LGG--IYAIRFATGA 489 (517)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~------g~~~---~~~~~------------~~g--~~~lR~~~~~ 489 (517)
.....++.+.+... |.++ ..+.. ..| ...+|+|++
T Consensus 370 ---------------------~~~~~~~l~~l~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG- 427 (445)
T 1qgn_A 370 ---------------------LLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG- 427 (445)
T ss_dssp ---------------------HHHHHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC-
T ss_pred ---------------------HHHHHHHHHhCCCceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec-
Confidence 12234555555321 2111 10000 012 368999995
Q ss_pred CCCcHHHHHHHHHHHHHHHHH
Q 010125 490 TLTEKRHVVVAWTVVQQHLEA 510 (517)
Q Consensus 490 ~~t~~~di~~l~~~l~~~~~~ 510 (517)
.||++.+++.|+++.+.
T Consensus 428 ----~Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 428 ----VEDFDDLKADILQALDS 444 (445)
T ss_dssp ----SSCHHHHHHHHHHHHHH
T ss_pred ----cCCHHHHHHHHHHHHhh
Confidence 34899999999887754
No 151
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.86 E-value=6.9e-21 Score=195.40 Aligned_cols=359 Identities=11% Similarity=0.023 Sum_probs=217.0
Q ss_pred HHHHHHHHHhhcCCCCCCCCCccceeCCCCCChHHHHHHHHHh-cccc-cccccccChhhHHHHHHHHHHHHHHcCCCcc
Q 010125 74 ETILQDVQQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSS-GFNI-VGFNWISSPAATELENIVMDWLGQMLKLPKS 151 (517)
Q Consensus 74 ~~il~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~-~~n~-~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~ 151 (517)
..+.+.+.+.-.++..+.....|++....++.+ ..+.+.+.. .+.. ....|...++..++++++.+|+....+.+..
T Consensus 14 ~~~~~~~~~~~~~~~i~l~~g~y~d~~~~~~~~-~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~ 92 (397)
T 3fsl_A 14 LTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQL-QAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLK 92 (397)
T ss_dssp HHHHHHHHTCCCSCCEECSSCCCCCTTSCCCCC-HHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH
T ss_pred hhHHHHHhcCCCCCeEEEeeeEEECCCCCccCc-HHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCccccc
Confidence 344444444333344443333333332222322 444555555 5543 3446666677888999999998765542101
Q ss_pred cccCCCC--ceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCC
Q 010125 152 FLFSGNG--GGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSS 229 (517)
Q Consensus 152 ~~~~~~~--~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~ 229 (517)
.. ..++|+|||+|+..++...... . +++.|++..++|.++..+++..|. +++.+|+..+++
T Consensus 93 -----~~~~~i~~t~g~~~a~~~~~~~~~~~--~-------~gd~vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~ 155 (397)
T 3fsl_A 93 -----QQRVATIQTLGGSGALKVGADFLKRY--F-------PESGVWVSDPTWENHVAIFAGAGF---EVSTYPWYDEAT 155 (397)
T ss_dssp -----TTCEEEEEESHHHHHHHHHHHHHHHH--C-------TTCCEEEESSCCHHHHHHHHHTTC---CEEEECCEETTT
T ss_pred -----ccceEEEEcCCcHHHHHHHHHHHHhc--C-------CCCeEEEeCCCchhHHHHHHHcCC---ceEEEeeeeccC
Confidence 12 4799999999998875433211 1 455688888999999999999999 999999843336
Q ss_pred cccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc---cChhHHHHHHHHhCCeEEcccccccccccCc-ccccc--c
Q 010125 230 YGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV---DPLKPLCDVAKQFGIWVHVDAAYAGSACICP-EFRHF--I 303 (517)
Q Consensus 230 ~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i---dpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~-~~~~~--~ 303 (517)
+.+|+++|++++++.. ....+++.+.++|+||.+ +++++|+++|++||+++++|++|+.+..... ..... +
T Consensus 156 ~~~d~~~l~~~l~~~~---~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 232 (397)
T 3fsl_A 156 NGVRFNDLLATLKTLQ---AGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAI 232 (397)
T ss_dssp TEECHHHHHHHHTTCC---TTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHH
T ss_pred CcCcHHHHHHHHHhCC---CCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHH
Confidence 7999999999997421 123578888999999998 5577999999999999999999977664311 11111 1
Q ss_pred cCCCCCCeeeeccccccC-CCCcceEEEE--eCchhHHhhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHH
Q 010125 304 DGVEGADSFSLNAHKWFF-ATLDCCCLWV--KDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFV 380 (517)
Q Consensus 304 ~g~~~aDsi~~~~hK~l~-~p~~~g~l~~--~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~ 380 (517)
.+......+..+++|.++ ....+|++++ .++............+.... ... ...+...++
T Consensus 233 ~~~~~~~i~~~S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~---~~~~~~~~~ 295 (397)
T 3fsl_A 233 ASAGLPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRN--------------YSS---PPNFGAQVV 295 (397)
T ss_dssp HHTTCCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTT--------------TSS---CCSHHHHHH
T ss_pred HhcCCCEEEEecccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhc--------------cCC---CCHHHHHHH
Confidence 112234466778999998 4466888875 34333221111100000000 000 012222222
Q ss_pred HHHhc--------HHHHHHHHHHHHHHHHHHHHHHhcCC---CeEEecCCCeeEEEEEecCCCcchhhhhhhhhccccch
Q 010125 381 IRNYG--------VANLRHFLRSHVNMAKLFERLVSGDK---RFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSE 449 (517)
Q Consensus 381 l~~~g--------~~g~~~~i~~~~~~a~~l~~~l~~~~---~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~ 449 (517)
...+. .+.++++.++..++++++.+.|++.+ ++++. .|..+++.|.-. .
T Consensus 296 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~~~-~------------------ 355 (397)
T 3fsl_A 296 AAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMPERNFDYL-LNQRGMFSYTGL-S------------------ 355 (397)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCTHH-HHCCSSEEECCC-C------------------
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceee-cCCceEEEecCC-C------------------
Confidence 22221 45577788888999999999998764 56543 333444443211 1
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 010125 450 EEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQH 507 (517)
Q Consensus 450 ~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~ 507 (517)
...+.+.+.+.|+.. .+. + |+++.. .++ ++|++++++|+++
T Consensus 356 -------~~~~~~~l~~~gi~v-~~g---~----Ris~~~-~~~-~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 356 -------AAQVDRLREEFGVYL-IAS---G----RMCVAG-LNT-ANVQRVAKAFAAV 396 (397)
T ss_dssp -------HHHHHHHHHTTCEEC-CTT---C----EEEGGG-CCT-TTHHHHHHHHHHH
T ss_pred -------HHHHHHHHHhCCEEE-CCC---C----eEEEEe-cCH-hhHHHHHHHHHhh
Confidence 123455566677644 332 1 999853 334 5799999998764
No 152
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.86 E-value=2.9e-20 Score=194.26 Aligned_cols=314 Identities=9% Similarity=-0.018 Sum_probs=202.2
Q ss_pred ccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCC
Q 010125 122 GFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQT 201 (517)
Q Consensus 122 ~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~ 201 (517)
...|...++..++++++++|+. .|++... ...++|+|+++++..+ .+..+ +++.|++++++
T Consensus 104 ~~~y~~~~g~~~lr~~ia~~~~--~g~~~~~-----~~i~~t~G~~~al~~~-~~l~~-----------~gd~Vl~~~p~ 164 (449)
T 3qgu_A 104 YSGYGAEQGQGALREAVASTFY--GHAGRAA-----DEIFISDGSKCDIARI-QMMFG-----------SKPTVAVQDPS 164 (449)
T ss_dssp CCCSTTTTCCHHHHHHHHHHHH--TTTTCCG-----GGEEEESCHHHHHHHH-HHHHC-----------SSSCEEEEESC
T ss_pred CCCCCCCCCcHHHHHHHHHHHH--cCCCCCH-----HHEEEccCHHHHHHHH-HHHhC-----------CCCEEEEcCCC
Confidence 3456555667899999999987 5553221 2789999999888655 33221 45668888999
Q ss_pred chHHHHHHHHcCCCCCC----------EEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccC---
Q 010125 202 HCALQKAAQIVGIDVKN----------FRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDP--- 268 (517)
Q Consensus 202 H~s~~kaa~~~G~g~~~----------v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idp--- 268 (517)
|.++..+++..|. + ++.+|++.++.+..|++++ ..+.+|+++.++|++|.+-+
T Consensus 165 ~~~~~~~~~~~g~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~v~l~~p~NPtG~~~~~~~ 230 (449)
T 3qgu_A 165 YPVYVDTSVMMGM---TGDHNGTGFDGIEYMVCNPDNHFFPDLSKA-----------KRTDIIFFCSPNNPTGAAATRAQ 230 (449)
T ss_dssp CTHHHHHHHHHTC---SCCBCSSSBTTEEEEECCGGGTTCCCGGGC-----------CCCSEEEEESSCTTTCCCCCHHH
T ss_pred ChhHHHHHHHcCC---cccccccccceeEEEecccccCCcCChhHc-----------CCCCEEEEeCCCCCCCCcCCHHH
Confidence 9999999999998 7 9999997644445554321 12346777789999999855
Q ss_pred hhHHHHHHHHhCCeEEcccccccccccCcccccc--ccCCCCCCeeeeccccccC-CCCcceEEEEeCchhHHhhhcCCc
Q 010125 269 LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHF--IDGVEGADSFSLNAHKWFF-ATLDCCCLWVKDPRALVSSLSTNP 345 (517)
Q Consensus 269 l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~--~~g~~~aDsi~~~~hK~l~-~p~~~g~l~~~~~~~~~~~~~~~~ 345 (517)
+++|+++|++||+++++|++|+++.......... +.+....+.+..+++|+++ .+..+|++++++...-........
T Consensus 231 l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~ 310 (449)
T 3qgu_A 231 LTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVRLGWTVVPKALKYANGEPVHA 310 (449)
T ss_dssp HHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTTCCCEEEECCTTCBCTTSCBHHH
T ss_pred HHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCccceeEEEecCHHHHhhhhhhHHH
Confidence 8889999999999999999998765432111111 1122356688899999997 557889988765421000000000
Q ss_pred cccCCccccccccccCCCccccCCCCCCchHHHHHHHHhc---HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCee
Q 010125 346 EYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYG---VANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFA 422 (517)
Q Consensus 346 ~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g---~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~~~ 422 (517)
. +.... ..+ ......+...++...+. .+.++++.++..++++++.+.|++. ++++..+....
T Consensus 311 ~-~~~~~----------~~~---~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~ 375 (449)
T 3qgu_A 311 D-WNRVM----------TTC---FNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEM-GFSVYGGDDAP 375 (449)
T ss_dssp H-HHHHH----------HHS---CCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEESSSSS
T ss_pred H-HHHHh----------hcc---cCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeeeCCCCee
Confidence 0 00000 000 00113344444444443 3567788899999999999999987 78876544455
Q ss_pred EEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhc-CcEEEeeeeE--CCEeEEEEEecCCCCcHHHHHH
Q 010125 423 VVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINAS-GKAYMTHAVL--GGIYAIRFATGATLTEKRHVVV 499 (517)
Q Consensus 423 ~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~--~g~~~lR~~~~~~~t~~~di~~ 499 (517)
++.+.+... ...++.+.|.++ |+...++..+ .+..++|+++.. ++++|++
T Consensus 376 ~~~~~~~~~------------------------~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~~---~~e~i~~ 428 (449)
T 3qgu_A 376 YIWVGFPGK------------------------PSWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAFG---SRENILE 428 (449)
T ss_dssp EEEEECTTS------------------------CHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS---CHHHHHH
T ss_pred EEEEECCCC------------------------CHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEecC---CHHHHHH
Confidence 666665411 024555666555 7654443322 235789999743 7889999
Q ss_pred HHHHHHHHHHH
Q 010125 500 AWTVVQQHLEA 510 (517)
Q Consensus 500 l~~~l~~~~~~ 510 (517)
++++|.++.++
T Consensus 429 ~l~~l~~~~~~ 439 (449)
T 3qgu_A 429 AVRRFKEAYGK 439 (449)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHh
Confidence 99999887654
No 153
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.86 E-value=3.1e-20 Score=191.78 Aligned_cols=349 Identities=11% Similarity=0.010 Sum_probs=214.7
Q ss_pred CCCCCCCCccceeCCCCCChHHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCc
Q 010125 87 GITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTT 166 (517)
Q Consensus 87 ~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~gg 166 (517)
...+..+..+.+.....+. +..+.+.+....+.....|....+..++.+++.+|+....+.+.. ..+++|+||
T Consensus 38 ~~i~l~~g~~~~~~~~~~~-~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~~~~~~------~~i~~t~g~ 110 (413)
T 3t18_A 38 AVINAALGTLLDDKGKIIA-LPSVYDRLDEMDRSHIASYAPIEGEKDYRKIVIDTLFGPYKPEGY------ISAIATPGG 110 (413)
T ss_dssp GCEECCSCCCBCTTSCBCC-CHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSE------EEEEEESHH
T ss_pred ceEeccccCccCCCCCcCC-hHHHHHHHHhcCcccccCcCCCCCCHHHHHHHHHHHhcccCcccc------CcEEEcCcc
Confidence 3445555545554333333 344556665544333456666667889999999999887654321 268999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHh
Q 010125 167 CEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVE 246 (517)
Q Consensus 167 t~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~ 246 (517)
++|+..++.+..+ +++.|+++.++|.++..+++..|. +++.+|++.+ ++.+|+++|++++++...
T Consensus 111 ~~al~~~~~~~~~-----------~gd~Vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~-~~~~d~~~l~~~l~~~~~ 175 (413)
T 3t18_A 111 TGAIRSAIFSYLD-----------EGDPLICHDYYWAPYRKICEEFGR---NFKTFEFFTD-DFAFNIDVYKEAIDEGIR 175 (413)
T ss_dssp HHHHHHHHHHHCC-----------SSCEEEEESSCCTHHHHHHHHHTC---EEEEECCBCT-TSSBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-----------CCCEEEECCCCcccHHHHHHHhCC---eEEEeeccCC-CCCcCHHHHHHHHHHHhh
Confidence 9999888775532 566788888999999999999999 9999998543 479999999999986321
Q ss_pred cCCcceEEEeecc-CCccccccChhHHH---HHHH------HhCCeEEcccccccccccCccccccccCCCC--CC---e
Q 010125 247 VGLIPLFLCATIG-TTAITAVDPLKPLC---DVAK------QFGIWVHVDAAYAGSACICPEFRHFIDGVEG--AD---S 311 (517)
Q Consensus 247 ~g~~p~~vv~t~g-tt~~G~idpl~eI~---~i~~------~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~--aD---s 311 (517)
.+ ...+++++.+ +|++|.+-|.+++. ++|+ +||+++++|++|+++................ .+ .
T Consensus 176 ~~-~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i 254 (413)
T 3t18_A 176 DS-DRIASLINSPGNNPTGYSLSDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEFAGDGDQQRKFFEKFSNLPRNLFVV 254 (413)
T ss_dssp HC-SEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTTSTTCEEEEEEECTTGGGSSSSSTTTGGGGGGTTCCTTEEEE
T ss_pred cC-CCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhccCCcEEEEEecccccccCChhhHHHHHHHHhhcCCCeeEE
Confidence 11 1236777777 89999998765555 5555 8999999999997765432222222211111 23 4
Q ss_pred eeeccccccC-CCCcceEEEEe--CchhHHhhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcH--
Q 010125 312 FSLNAHKWFF-ATLDCCCLWVK--DPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGV-- 386 (517)
Q Consensus 312 i~~~~hK~l~-~p~~~g~l~~~--~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~-- 386 (517)
++.+++|.++ ....+|+++.. +++.. +.+.....+.... .......+...++...+..
T Consensus 255 ~~~S~sK~~~~~G~riG~~~~~~~~~~~~-~~~~~~~~~~~~~----------------~~~~~~~~~~~a~~~~l~~~~ 317 (413)
T 3t18_A 255 VAFSMSKSHTAYGLRSGAAVGISSSKEII-EEFEASLAHSARC----------------NWSNGTHAAQNILIELERAEN 317 (413)
T ss_dssp EEEEHHHHTTCGGGCCEEEEEEESCHHHH-HHHHHHHHHHHHH----------------HTSSCCHHHHHHHHHTTSHHH
T ss_pred EEEecCccCCCcCcCcEEEEEecCCHHHH-HHHHHHHHHhhhc----------------cccCCChHHHHHHHHHhcChH
Confidence 5568999998 44668888762 44332 2221111111000 0001123344444444322
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHH
Q 010125 387 -----ANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELL 461 (517)
Q Consensus 387 -----~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 461 (517)
+..+++.++..++++++.+.|++. ++++. +++.+++.|.-... ..++.
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~-~~~~~~~~~~~~~~-------------------------~~~~~ 370 (413)
T 3t18_A 318 KKIYEQELVDLRNMLKSRADVFVTAAKEN-KLTMI-PYFGGFFTFIPTDK-------------------------AFDIV 370 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCB-CCCSSSCEEEECSC-------------------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcc-CCCceEEEEeCCCC-------------------------HHHHH
Confidence 233455677788889999999887 77765 45555444321111 24555
Q ss_pred HHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 010125 462 ESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHLEAFQ 512 (517)
Q Consensus 462 ~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l~ 512 (517)
+.|.++|+...++ ..++|+++... +++ ++ ++.|.++.+++.
T Consensus 371 ~~l~~~gv~v~~g-----~~~iRis~~~~-~~~-~~---l~~l~~~l~~~~ 411 (413)
T 3t18_A 371 KDLEKENIFTIPS-----AKGIRVAICGV-GEE-KI---PKLVQRLAFYTN 411 (413)
T ss_dssp HHHHHTTEECEEC-----SSEEEECTTTS-CGG-GH---HHHHHHHHHHHH
T ss_pred HHHHhCCEEEecC-----CCceEEEEeeC-CHH-HH---HHHHHHHHHHHh
Confidence 6676778654332 46899998633 333 33 555555555543
No 154
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.86 E-value=9.8e-21 Score=196.27 Aligned_cols=244 Identities=14% Similarity=0.115 Sum_probs=170.1
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHH
Q 010125 127 SSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQ 206 (517)
Q Consensus 127 ~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~ 206 (517)
..|...++| +++++++|.+ ..+++++|++|+..++.+... +++.|++++..|.+..
T Consensus 80 ~~p~~~~le----~~lA~l~g~~---------~~v~~~sG~~Ai~~al~al~~-----------~Gd~Vi~~~~~y~~~~ 135 (430)
T 3ri6_A 80 SNPTVEDLE----QRLKNLTGAL---------GVLALGSGMAAISTAILTLAR-----------AGDSVVTTDRLFGHTL 135 (430)
T ss_dssp CCHHHHHHH----HHHHHHHTCS---------EEEEESCHHHHHHHHHHHHCC-----------TTCEEEEETTCCHHHH
T ss_pred CCHHHHHHH----HHHHHHHCCC---------cEEEECCHHHHHHHHHHHHhC-----------CCCEEEEcCCCchhHH
Confidence 345555555 5566777764 357778889998887776532 5667888999998877
Q ss_pred H----HHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCe
Q 010125 207 K----AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIW 282 (517)
Q Consensus 207 k----aa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~ 282 (517)
. .+...|+ +++.||.+ |+++|+++|++++ .+|+++.++|++|.+.|+++|+++|++||++
T Consensus 136 ~~~~~~~~~~G~---~~~~v~~~-------d~~~l~~ai~~~t------~~v~~e~p~NptG~~~dl~~i~~la~~~g~~ 199 (430)
T 3ri6_A 136 SLFQKTLPSFGI---EVRFVDVM-------DSLAVEHACDETT------KLLFLETISNPQLQVADLEALSKVVHAKGIP 199 (430)
T ss_dssp HHHHTHHHHTTC---EEEEECTT-------CHHHHHHHCCTTE------EEEEEESSCTTTCCCCCHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHcCC---EEEEeCCC-------CHHHHHHhhCCCC------eEEEEECCCCCCCeecCHHHHHHHHHHcCCE
Confidence 7 6678898 89998864 8999999997654 3788999999999999999999999999999
Q ss_pred EEcccccccccccCccccccccCCCCCCeeeeccccccCCC--CcceEEEEeCchhHH---------hhhcCCccccCCc
Q 010125 283 VHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFAT--LDCCCLWVKDPRALV---------SSLSTNPEYLKNK 351 (517)
Q Consensus 283 lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p--~~~g~l~~~~~~~~~---------~~~~~~~~yl~~~ 351 (517)
+|+|++|+.+.+..+. . .++|+++.+++|+++.| .-+|+++++...... +.+.. ..|+...
T Consensus 200 livD~a~~~~~~~~~~--~-----~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~-~~~i~~~ 271 (430)
T 3ri6_A 200 LVVDTTMTPPYLLEAK--R-----LGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGP-MAFLYKA 271 (430)
T ss_dssp EEEECTTSCTTTCCGG--G-----GTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGG-GHHHHHH
T ss_pred EEEECCCcccccCChH--H-----cCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhch-hhHHHHH
Confidence 9999999876653221 1 16899999999999876 345666654432110 00000 0011000
Q ss_pred cccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCC-----------
Q 010125 352 ATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCH----------- 420 (517)
Q Consensus 352 ~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~----------- 420 (517)
. ..+....+....++..|..++ |.+.+..++++..++++++.+.|++.|+++.+..|.
T Consensus 272 ~---------~~~~~~~g~~~~~~~a~l~l~--~l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~ 340 (430)
T 3ri6_A 272 R---------KEVFQNLGPSLSPHNAYLQSL--GLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAK 340 (430)
T ss_dssp H---------HTHHHHHCCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHH
T ss_pred H---------HHHHHhcCCCCCHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHH
Confidence 0 000001122234556666665 567788899999999999999999999987554443
Q ss_pred -----ee-EEEEEec
Q 010125 421 -----FA-VVCFRVS 429 (517)
Q Consensus 421 -----~~-~v~f~~~ 429 (517)
.+ +++|.+.
T Consensus 341 ~~~g~Gg~~lsf~l~ 355 (430)
T 3ri6_A 341 RQFRYAGSILTFELE 355 (430)
T ss_dssp HHCSSCCSEEEEECS
T ss_pred HhCCCCceEEEEEEC
Confidence 34 8889886
No 155
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.86 E-value=3.8e-20 Score=189.90 Aligned_cols=290 Identities=12% Similarity=0.032 Sum_probs=183.3
Q ss_pred HHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHH
Q 010125 132 TELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQI 211 (517)
Q Consensus 132 ~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~ 211 (517)
.....++.+++++++|.+.+ .+++|+|||+|+..++.+++... .++.+|+.+...|.+...++..
T Consensus 86 ~~~~~~l~~~la~~~~~~~~-------~v~~~~gg~~a~~~al~~~~~~~--------~~~~vi~~~~~y~~~~~~~~~~ 150 (395)
T 1vef_A 86 TPMRGEFYRTLTAILPPELN-------RVFPVNSGTEANEAALKFARAHT--------GRKKFVAAMRGFSGRTMGSLSV 150 (395)
T ss_dssp CHHHHHHHHHHHHTSCTTEE-------EEEEESSHHHHHHHHHHHHHHHH--------SCCEEEEETTCCCCSSHHHHHT
T ss_pred CHHHHHHHHHHHHhcCCCcC-------EEEEcCcHHHHHHHHHHHHHHHh--------CCCeEEEEcCCcCCCchhhhhh
Confidence 34556677888888876544 68999999999999888765321 0344555554455566667777
Q ss_pred cCCCCCC------------EEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccC----hhHHHHH
Q 010125 212 VGIDVKN------------FRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDP----LKPLCDV 275 (517)
Q Consensus 212 ~G~g~~~------------v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idp----l~eI~~i 275 (517)
.|. . +..+| ..|+++|+++|+++ +.+|+++..++++|.+.| +++|+++
T Consensus 151 ~g~---~~~~~~~~p~~~~~~~~~-------~~d~~~l~~~i~~~------~~~v~~~~~~~~tG~~~~~~~~l~~i~~l 214 (395)
T 1vef_A 151 TWE---PKYREPFLPLVEPVEFIP-------YNDVEALKRAVDEE------TAAVILEPVQGEGGVRPATPEFLRAAREI 214 (395)
T ss_dssp CCC---HHHHGGGCSCSSCEEEEC-------TTCHHHHHHHCCTT------EEEEEECSEETTTTSEECCHHHHHHHHHH
T ss_pred cCC---cccccccCCCCCCeeEeC-------CCcHHHHHHHhccC------EEEEEEeCccCCCCccCCCHHHHHHHHHH
Confidence 665 3 33333 24899999998743 346777777788998877 9999999
Q ss_pred HHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCccccCCccccc
Q 010125 276 AKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATES 355 (517)
Q Consensus 276 ~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~ 355 (517)
|++||+++|+|++|+++............++ ..|++ ++||+++.+.++|+++++++ +.+.+... .+.
T Consensus 215 ~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~-~~d~~--s~sK~~~~g~~~G~~~~~~~--~~~~l~~~-~~~------- 281 (395)
T 1vef_A 215 TQEKGALLILDEIQTGMGRTGKRFAFEHFGI-VPDIL--TLAKALGGGVPLGVAVMREE--VARSMPKG-GHG------- 281 (395)
T ss_dssp HHHHTCEEEEECTTTTTTTTSSSSTHHHHTC-CCSEE--EECGGGGTTSSCEEEEEEHH--HHHTSCTT-SSC-------
T ss_pred HHHcCCEEEEEecccCCccCCchhHhhhcCC-CCCEE--EEcccccCCCceEEEEehHH--HHhhhccC-CcC-------
Confidence 9999999999999985322111111011122 46766 45999998889999998754 22222210 000
Q ss_pred cccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC--eEEecCCCeeEEEEEecCCCc
Q 010125 356 MQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKR--FEIVFPCHFAVVCFRVSPSPV 433 (517)
Q Consensus 356 ~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~--~~l~~~~~~~~v~f~~~~~~~ 433 (517)
. +.. ........+..+++.+.. .++.++..++++++.+.|++.+. +... ++..++++|.+...
T Consensus 282 ------~--~~~-~~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~g~~~~~~~~~~-- 346 (395)
T 1vef_A 282 ------T--TFG-GNPLAMAAGVAAIRYLER---TRLWERAAELGPWFMEKLRAIPSPKIREV-RGMGLMVGLELKEK-- 346 (395)
T ss_dssp ------C--SST-TCHHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHHHTSCCTTEEEE-EEETTEEEEEESSC--
T ss_pred ------C--CcC-CCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHhhcCceEEE-EEEEEEEEEEEcCh--
Confidence 0 000 001112233344444322 34677888899999999988642 2111 23345677766432
Q ss_pred chhhhhhhhhccccchHHHHHHHHHHHHHHHH-hcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 010125 434 LMDKLKTKYVNCLLSEEEQINEFNRELLESIN-ASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHL 508 (517)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~ 508 (517)
..++.+.|. +.|+.... .+..++|+++ +..++++++++++++|+++.
T Consensus 347 -----------------------~~~l~~~l~~~~gi~v~~----~~~~~iRi~~-~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 347 -----------------------AAPYIARLEKEHRVLALQ----AGPTVIRFLP-PLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp -----------------------SHHHHHHHHHHHCEECEE----SSTTEEEECC-CTTCCHHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHCCeEEec----CCCCEEEEeC-CCCCCHHHHHHHHHHHHHHh
Confidence 134566666 67865432 2356899997 46778899999999998764
No 156
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.86 E-value=1.1e-19 Score=186.11 Aligned_cols=283 Identities=14% Similarity=0.150 Sum_probs=188.4
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHH
Q 010125 128 SPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQK 207 (517)
Q Consensus 128 sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~k 207 (517)
.+...+++ +.+++++|.+ . . +++++||+|+..++.++.. +++.|+++..+|.++..
T Consensus 51 ~~~~~~l~----~~la~~~~~~-~-------~-i~~~sGt~a~~~~~~~~~~-----------~g~~vl~~~~~~~~~~~ 106 (386)
T 1cs1_A 51 NPTRDVVQ----RALAELEGGA-G-------A-VLTNTGMSAIHLVTTVFLK-----------PGDLLVAPHDCYGGSYR 106 (386)
T ss_dssp CHHHHHHH----HHHHHHHTCS-E-------E-EEESSHHHHHHHHHHHHCC-----------TTCEEEEETTCCHHHHH
T ss_pred CccHHHHH----HHHHHHhCCC-c-------E-EEeCCHHHHHHHHHHHHhC-----------CCCEEEEecCCcHhHHH
Confidence 34445555 4555566655 2 3 4445669999888776522 45668888899988655
Q ss_pred H----HHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeE
Q 010125 208 A----AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWV 283 (517)
Q Consensus 208 a----a~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~l 283 (517)
. ++..|+ +++.+|.+ |+++|+++|++++ .+|+++.+++++|.+.|+++|+++|++||+++
T Consensus 107 ~~~~~~~~~g~---~~~~~~~~-------d~~~l~~~i~~~~------~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~l 170 (386)
T 1cs1_A 107 LFDSLAKRGCY---RVLFVDQG-------DEQALRAALAEKP------KLVLVESPSNPLLRVVDIAKICHLAREVGAVS 170 (386)
T ss_dssp HHHHHHTTTSC---EEEEECTT-------CHHHHHHHHHTCC------SEEEEECSCTTTCCCCCHHHHHHHHHHTTCEE
T ss_pred HHHHHHHhcCC---EEEEeCCC-------CHHHHHHhhccCC------cEEEEeCCCCCCCcccCHHHHHHHHHHcCCEE
Confidence 4 355677 88888753 8999999997543 37888999999999999999999999999999
Q ss_pred EcccccccccccCccccccccCCCCCCeeeeccccccCCCCcc--eEEEEeCchhHHhhhcCCccccCCccccccccccC
Q 010125 284 HVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDC--CCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDY 361 (517)
Q Consensus 284 hvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~--g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~ 361 (517)
|+|++|+++....+. . .++|.++.++||+++.|.+. |+++++++.... .+.. +...
T Consensus 171 i~De~~~~~~~~~~~--~-----~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~-~l~~---~~~~----------- 228 (386)
T 1cs1_A 171 VVDNTFLSPALQNPL--A-----LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVT-ELAW---WANN----------- 228 (386)
T ss_dssp EEECTTTCTTTCCGG--G-----GTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHH-HHHH---HHHH-----------
T ss_pred EEECCCcccccCCcc--c-----cCceEEEEcCcccccCCCCceeEEEEeCcHHHHH-HHHH---HHHh-----------
Confidence 999999887653221 1 26899999999999988763 888887643322 2210 0000
Q ss_pred CCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-----------------CeeEE
Q 010125 362 KDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPC-----------------HFAVV 424 (517)
Q Consensus 362 ~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~-----------------~~~~v 424 (517)
.+.....+..|++++. .+.+.++.++..++++++.+.|++++.+.-...+ ..+++
T Consensus 229 ------~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 300 (386)
T 1cs1_A 229 ------IGVTGGAFDSYLLLRG--LRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAML 300 (386)
T ss_dssp ------HTCBCCHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEE
T ss_pred ------cCCCCCHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEE
Confidence 0001123344544443 2345667778888899999999888766433111 26778
Q ss_pred EEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeEC-------------------------C
Q 010125 425 CFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLG-------------------------G 479 (517)
Q Consensus 425 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-------------------------g 479 (517)
+|.+... ...+.+.|.+.|++. ....+. |
T Consensus 301 ~~~~~~~-------------------------~~~~~~~l~~~gi~~-~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g 354 (386)
T 1cs1_A 301 SFELDGD-------------------------EQTLRRFLGGLSLFT-LAESLGGVESLISHAATMTHAGMAPEARAAAG 354 (386)
T ss_dssp EEEESSC-------------------------HHHHHHHHHTCSSSE-EBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHT
T ss_pred EEEECCC-------------------------HHHHHHHHHhCCcce-EcccCCCcceeeecccccccccCCHHHHHhcC
Confidence 8886432 234555666777643 211010 1
Q ss_pred --EeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 010125 480 --IYAIRFATGATLTEKRHVVVAWTVVQQH 507 (517)
Q Consensus 480 --~~~lR~~~~~~~t~~~di~~l~~~l~~~ 507 (517)
..++|+++. ..+++++|+++.++|+++
T Consensus 355 ~~~~~iRis~~-~~~~~~~i~~l~~al~~~ 383 (386)
T 1cs1_A 355 ISETLLRISTG-IEDGEDLIADLENGFRAA 383 (386)
T ss_dssp CCTTEEEEECC-SSCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEc-cCCHHHHHHHHHHHHHHh
Confidence 368999995 467777888888887765
No 157
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.86 E-value=9.6e-20 Score=190.65 Aligned_cols=321 Identities=14% Similarity=0.099 Sum_probs=196.5
Q ss_pred ccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCc-
Q 010125 124 NWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTH- 202 (517)
Q Consensus 124 ~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H- 202 (517)
.|..++...++++.+.+ ++|.+ .+++|+|||+|+..++.++.+ +++ +++..+|
T Consensus 70 ~y~~~~~~~~l~~~la~----~~~~~---------~~~~~~~gt~a~~~al~~l~~-----------~gd--i~~~~~~~ 123 (456)
T 2ez2_A 70 AYAGSENFYHLERTVQE----LFGFK---------HIVPTHQGRGAENLLSQLAIK-----------PGQ--YVAGNMYF 123 (456)
T ss_dssp CSSSCHHHHHHHHHHHH----HHCCS---------EEEEESSHHHHHHHHHHHHCC-----------TTC--EEEESSCC
T ss_pred hcccChhHHHHHHHHHH----HhCCC---------cEEEeCCcHHHHHHHHHHhCC-----------CCC--Eecccccc
Confidence 46666777777766554 45543 579999999999988876632 334 4456777
Q ss_pred hHHHHHHHHcCCCCCCEEEEecCCC----C----CcccCHHHHHHHHHHhHhcCCcceEEEeeccCC-ccccccC---hh
Q 010125 203 CALQKAAQIVGIDVKNFRAIKTTKS----S----SYGLSPDSLMAQINSDVEVGLIPLFLCATIGTT-AITAVDP---LK 270 (517)
Q Consensus 203 ~s~~kaa~~~G~g~~~v~~vp~d~~----~----~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt-~~G~idp---l~ 270 (517)
.++..++...|. +++.++++++ . ++.+|+++|+++|++.++ ..+.+|+++.+++ ++|.+-| ++
T Consensus 124 ~~~~~~~~~~G~---~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~--~~~~~v~l~~p~n~ptG~~~~~~~l~ 198 (456)
T 2ez2_A 124 TTTRYHQEKNGA---VFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGA--ENIAYICLAVTVNLAGGQPVSMANMR 198 (456)
T ss_dssp HHHHHHHHHTTC---EEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCG--GGEEEEEEESSBTTTTSBCCCHHHHH
T ss_pred chhHHHHHHcCC---EEEEecccccccccccccccCCCCHHHHHHHHHhccc--cceeEEEEeccCCCCCCccCCHHHHH
Confidence 788889999999 9999998731 1 268999999999987541 1234677777776 8998766 99
Q ss_pred HHHHHHHHhCCeEEcccccccc---------cccCccc-cccc-cCCCCCCeeeeccccccCCCCcceEEEEeCchhHHh
Q 010125 271 PLCDVAKQFGIWVHVDAAYAGS---------ACICPEF-RHFI-DGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVS 339 (517)
Q Consensus 271 eI~~i~~~~gi~lhvDaA~g~~---------~~~~~~~-~~~~-~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~ 339 (517)
+|+++|++||+|+|+|++|+.+ ....... .... .--...|.+++++||+++.| .+|+++.++++....
T Consensus 199 ~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~~~-~gG~~~~~~~~~~~~ 277 (456)
T 2ez2_A 199 AVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLVN-IGGFLCMNDDEMFSS 277 (456)
T ss_dssp HHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCS-SCEEEEESCHHHHHH
T ss_pred HHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeCcccCCCC-ceeEEEECCHHHHHH
Confidence 9999999999999999999763 1111110 0000 00024688888899998765 467777755544322
Q ss_pred hhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHhcCCCeEEecC
Q 010125 340 SLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANL-RHFLRSHVNMAKLFERLVSGDKRFEIVFP 418 (517)
Q Consensus 340 ~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~-~~~i~~~~~~a~~l~~~l~~~~~~~l~~~ 418 (517)
.......+. . +....+.+...+.. +++... +.+ ++.+++..++++++.+.|++. +++++.+
T Consensus 278 ~~~~~~~~~-~-------------~~~~~~~~~~~~~a-~a~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~p 339 (456)
T 2ez2_A 278 AKELVVVYE-G-------------MPSYGGLAGRDMEA-MAIGLR--EAMQYEYIEHRVKQVRYLGDKLKAA-GVPIVEP 339 (456)
T ss_dssp HHHHHHHHT-C-------------CTTTTTCCHHHHHH-HHHHHH--HHTCHHHHHHHHHHHHHHHHHHHHT-TCCBCSS
T ss_pred HHHHHhhcc-C-------------cccccCcchhHHHH-HHHHHH--HHhHHHHHHHHHHHHHHHHHHHhcC-CCccccC
Confidence 111000000 0 00001111111111 022111 233 456677788889999999875 7776544
Q ss_pred CCeeEEEEEecC--CCcchhhhhhhhhccccchHHHHHHH-HHHHHHHH-HhcCcEEEeeee-------------ECCEe
Q 010125 419 CHFAVVCFRVSP--SPVLMDKLKTKYVNCLLSEEEQINEF-NRELLESI-NASGKAYMTHAV-------------LGGIY 481 (517)
Q Consensus 419 ~~~~~v~f~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l-~~~g~~~~~~~~-------------~~g~~ 481 (517)
.....+.+.+.. .+. +. ..+ .+.+.++| .+.|+..+.... ..+..
T Consensus 340 ~~~~~~~~~~~~~~~~~---------------~~---~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~ 401 (456)
T 2ez2_A 340 VGGHAVFLDARRFCEHL---------------TQ---DEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLE 401 (456)
T ss_dssp CCSSEEEEEHHHHTTTS---------------CG---GGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCC
T ss_pred CCceEEEEEhHHhcCCC---------------Ch---hhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCC
Confidence 444445555421 110 00 112 34556666 466765443221 11236
Q ss_pred EEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 010125 482 AIRFATGATLTEKRHVVVAWTVVQQHLEAFQ 512 (517)
Q Consensus 482 ~lR~~~~~~~t~~~di~~l~~~l~~~~~~l~ 512 (517)
++|+++....++++++++++++|+++.++..
T Consensus 402 ~iRis~~~~~~t~e~i~~~~~~l~~~l~~~~ 432 (456)
T 2ez2_A 402 TVRLTIPRRVYTYAHMDVVADGIIKLYQHKE 432 (456)
T ss_dssp EEEEECCTTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 8999986433788999999999999877643
No 158
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.86 E-value=2e-20 Score=196.44 Aligned_cols=376 Identities=11% Similarity=0.037 Sum_probs=207.8
Q ss_pred CCHHHHHHHHHHhhcCCCCCCC-CCccceeCCCCCChHHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCC
Q 010125 71 ESMETILQDVQQHIVPGITHWQ-SPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLP 149 (517)
Q Consensus 71 ~~~~~il~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~ 149 (517)
....+-.+.+...- .+..+.. .-.|++|..+.+. + .+.+.+...+......|..++...++++. +++++|.+
T Consensus 18 ~~~~~~~~~~~~~g-~~~~~~~~~~~ylD~~~~~~~-~-~v~~a~~~~l~~~~~~y~~~~~~~~l~~~----la~~~~~~ 90 (467)
T 2oqx_A 18 TTRAYREEAIIKSG-MNPFLLDSEDVFIDLLTDSGT-G-AVTQSMQAAMMRGDEAYSGSRSYYALAES----VKNIFGYQ 90 (467)
T ss_dssp CCHHHHHHHHHHTT-SCGGGSCGGGCSEECSCCSSC-S-CCCHHHHHHTTSCCCCSSSCHHHHHHHHH----HHHHHCCS
T ss_pred ccHHHHHHHHHHcC-CCceeccCCCeeEecccCCCc-H-HHHHHHHHHhccCcceeccCchhHHHHHH----HHHHhCcC
Confidence 35555555555431 1222222 2357887655444 3 33344444444333456666766666654 55555653
Q ss_pred cccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCC-eEEEeCCCCchHHH-HHHHHcCCCCCCEEEE-----
Q 010125 150 KSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISK-LIVYGSDQTHCALQ-KAAQIVGIDVKNFRAI----- 222 (517)
Q Consensus 150 ~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~-~~v~~s~~~H~s~~-kaa~~~G~g~~~v~~v----- 222 (517)
.+++|+|||+||..|+.++++......|. ++ +.|+++ ..|+... ......|. .++..
T Consensus 91 ---------~v~~t~~gt~A~~~al~~~~~~~~~~~G~---~~~d~Ii~~-~~h~~t~~~~~~~~~~---~~~~~~~~~~ 154 (467)
T 2oqx_A 91 ---------YTIPTHQGRGAEQIYIPVLIKKREQEKGL---DRSKMVAFS-NYFFDTTQGHSQINGC---TVRNVYIKEA 154 (467)
T ss_dssp ---------EEEEEC--CCSHHHHHHHHHHHHHHHHCC---CTTTCEEEE-SSCCHHHHHHHHHTTC---EEEECBCTTT
T ss_pred ---------cEEEcCCcHHHHHHHHHHHhccccccCCC---CccceEEec-ccccccchhhhhccCc---ceeecccccc
Confidence 57999999999999999887541111120 11 335555 5775433 33344455 44432
Q ss_pred -ecCC--CCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcc-ccc---cChhHHHHHHHHhCCeEEccccccc-ccc
Q 010125 223 -KTTK--SSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAI-TAV---DPLKPLCDVAKQFGIWVHVDAAYAG-SAC 294 (517)
Q Consensus 223 -p~d~--~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~-G~i---dpl~eI~~i~~~~gi~lhvDaA~g~-~~~ 294 (517)
+.+. ..++.+|+++|+++|++.. ...+.+|+++.+++++ |.+ +++++|+++|++||+|+|+|+|++. ...
T Consensus 155 ~~~~~~~~~~~~~d~~~Le~~i~~~~--~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~ 232 (467)
T 2oqx_A 155 FDTGVRYDFKGNFDLEGLERGIEEVG--PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAY 232 (467)
T ss_dssp TCTTSCCTTTTCBCHHHHHHHHHHHC--GGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHH
T ss_pred ccCCCCCCccCCcCHHHHHHHHHhcC--CCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhh
Confidence 1210 0246899999999998531 0113467788888887 665 5689999999999999999988755 221
Q ss_pred --------cCc-cccccc-cCCCCCCeeeeccccccCCCCcceEEEEeCc---hhHHhhhcCCcccc--CCccccccccc
Q 010125 295 --------ICP-EFRHFI-DGVEGADSFSLNAHKWFFATLDCCCLWVKDP---RALVSSLSTNPEYL--KNKATESMQVV 359 (517)
Q Consensus 295 --------~~~-~~~~~~-~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~---~~~~~~~~~~~~yl--~~~~~~~~~~~ 359 (517)
... ...... ...+.+|++++++||+++.|.| |+++.++. ..+.. +. .+. ....
T Consensus 233 ~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~~~~~~~~~~~-~~---~~~~~~~~~------- 300 (467)
T 2oqx_A 233 FIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCMKDDSFFDVYTE-CR---TLCVVQEGF------- 300 (467)
T ss_dssp HHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSC-EEEEECSGGGHHHHHH-HH---HHHHHTTSS-------
T ss_pred hcccccccccCccHHHHhhhhhccCCeEEEecccccCCCCc-eEEEecChhHHHHHHH-HH---HhhhccCCc-------
Confidence 000 011110 0013588899999999988754 66666554 22211 11 111 0000
Q ss_pred cCCCccccCCCCCCchHHHHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHhcCCCeEEecCCCeeEEEEEecC--CCcchh
Q 010125 360 DYKDWQITLSRRFRSLKLWFVIRNYGVANL-RHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSP--SPVLMD 436 (517)
Q Consensus 360 ~~~~~~~~~sr~~~al~~~~~l~~~g~~g~-~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~~~~v~f~~~~--~~~~~~ 436 (517)
.+.+. .+.....++...-.+.+ ++.+++..++++++.+.|++. ++++. +....++.+.+.. ...
T Consensus 301 ------~~~~~--~~~~~~~al~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~~~~~~--- 367 (467)
T 2oqx_A 301 ------PTYGG--LEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEI-GVVCQ-QAGGHAAFVDAGKLLPHI--- 367 (467)
T ss_dssp ------CCCCC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT-TCCEE-EECSSCEEEEHHHHSTTS---
T ss_pred ------ccccc--hhhhHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHC-CCeee-cCCceEEEEechhhcccC---
Confidence 00000 11111112221001112 235566678889999999887 77776 5445556666531 100
Q ss_pred hhhhhhhccccchHHHHHHH-HHHHHHHH-HhcCcEEEeeeeE-------------CCEeEEEEEecCCC-CcHHHHHHH
Q 010125 437 KLKTKYVNCLLSEEEQINEF-NRELLESI-NASGKAYMTHAVL-------------GGIYAIRFATGATL-TEKRHVVVA 500 (517)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~-~~~l~~~l-~~~g~~~~~~~~~-------------~g~~~lR~~~~~~~-t~~~di~~l 500 (517)
+. ..+ ..++.+.| .+.|+.+.+...+ .+..++|+++. .. ++++||+++
T Consensus 368 ------------~~---~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~-~~~~t~e~i~~~ 431 (467)
T 2oqx_A 368 ------------PA---DQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIP-RATYTQTHMDFI 431 (467)
T ss_dssp ------------CG---GGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCC-TTTSCHHHHHHH
T ss_pred ------------Cc---ccccHHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEEec-CCCCCHHHHHHH
Confidence 00 111 34567777 6778654432211 02368999984 45 788999999
Q ss_pred HHHHHHHHHHHH
Q 010125 501 WTVVQQHLEAFQ 512 (517)
Q Consensus 501 ~~~l~~~~~~l~ 512 (517)
+++|+++.+++.
T Consensus 432 ~~~l~~~l~~~~ 443 (467)
T 2oqx_A 432 IEAFKHVKENAA 443 (467)
T ss_dssp HHHHHHHHHSGG
T ss_pred HHHHHHHHhhhh
Confidence 999999876543
No 159
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.85 E-value=2.5e-20 Score=193.70 Aligned_cols=308 Identities=11% Similarity=0.031 Sum_probs=200.2
Q ss_pred cccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCc
Q 010125 123 FNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTH 202 (517)
Q Consensus 123 ~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H 202 (517)
..|....+..++++++++|+.+.++.+++ ..++|+|+++++.. +....+ +++.|++++++|
T Consensus 92 ~~y~~~~g~~~l~~~ia~~~~~~~~~~~~-------~i~~t~G~~~al~~-l~~l~~-----------~gd~Vl~~~p~y 152 (432)
T 3ei9_A 92 SGYGAEQGAKPLRAAIAKTFYGGLGIGDD-------DVFVSDGAKCDISR-LQVMFG-----------SNVTIAVQDPSY 152 (432)
T ss_dssp CCCCCTTCCHHHHHHHHHHHHTTTTCCGG-------GEEEESCHHHHHHH-HHHHHC-----------TTCCEEEEESCC
T ss_pred cCCCCCCCCHHHHHHHHHHHHccCCCCcc-------eEEECCChHHHHHH-HHHHcC-----------CCCEEEEeCCCC
Confidence 35655567789999999999875565554 68999999988754 322211 556688889999
Q ss_pred hHHHHHHHHcCCCC---------CCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcccccc---Chh
Q 010125 203 CALQKAAQIVGIDV---------KNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVD---PLK 270 (517)
Q Consensus 203 ~s~~kaa~~~G~g~---------~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~id---pl~ 270 (517)
.++..+++.+|... .+++.+|++.++++..|++. . ..+.+|+++.++|++|.+- +++
T Consensus 153 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~----~~~~~v~l~~p~NPtG~~~~~~~l~ 221 (432)
T 3ei9_A 153 PAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST-------V----GRTDIIFFCSPNNPTGAAATREQLT 221 (432)
T ss_dssp THHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-------C----CCCSEEEEESSCTTTCCCCCHHHHH
T ss_pred HHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCChhh-------C----CCCCEEEEeCCCCCCCCCCCHHHHH
Confidence 99999999888421 26888998753334445322 1 1234677788999999885 477
Q ss_pred HHHHHHHHhCCeEEcccccccccccCcccccc--ccCCCCCCeeeeccccccC-CCCcceEEEEeCchh------HHhhh
Q 010125 271 PLCDVAKQFGIWVHVDAAYAGSACICPEFRHF--IDGVEGADSFSLNAHKWFF-ATLDCCCLWVKDPRA------LVSSL 341 (517)
Q Consensus 271 eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~--~~g~~~aDsi~~~~hK~l~-~p~~~g~l~~~~~~~------~~~~~ 341 (517)
+|+++|++||+++++|++|+.+.... ..... +.+....+.++.+++|+++ .+..+|++++++... +...+
T Consensus 222 ~l~~la~~~~~~li~Dea~~~~~~~~-~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~ 300 (432)
T 3ei9_A 222 QLVEFAKKNGSIIVYDSAYAMYMSDD-NPRSIFEIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDF 300 (432)
T ss_dssp HHHHHHHHHTCEEEEECTTGGGCCSS-CCSSGGGSTTGGGTEEEEEESHHHHCTTTTCCEEEECCTTCBCTTSCBHHHHH
T ss_pred HHHHHHHHcCcEEEEccchHhhccCC-CCCChhhcCCCCCeEEEEecchhccCCcccceEEEEEChHHhhcchHHHHHHH
Confidence 78888999999999999998764431 11111 1122345678889999997 557789988865431 01111
Q ss_pred cCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHh---cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC
Q 010125 342 STNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNY---GVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFP 418 (517)
Q Consensus 342 ~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~---g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~ 418 (517)
.....+.. .....+...++...+ +.+.++++.++..++++++.+.|++. ++++..+
T Consensus 301 ~~~~~~~~--------------------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 359 (432)
T 3ei9_A 301 NRIICTCF--------------------NGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSL-GYDVYGG 359 (432)
T ss_dssp HHHHHHSC--------------------CCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEEC
T ss_pred HHHhcccc--------------------CCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHC-CceecCC
Confidence 10000000 011234444444444 33557788889999999999999987 7887755
Q ss_pred CCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHh-cCcEEEeeeeE--CCEeEEEEEecCCCCcHH
Q 010125 419 CHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINA-SGKAYMTHAVL--GGIYAIRFATGATLTEKR 495 (517)
Q Consensus 419 ~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~--~g~~~lR~~~~~~~t~~~ 495 (517)
....++.+.+.... ..++.+.+.+ .|+...++..+ .+..++|+++. ++++
T Consensus 360 ~~~~~~~~~~~~~~------------------------~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~~---~~~e 412 (432)
T 3ei9_A 360 KNAPYVWVHFPNQS------------------------SWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAF---GHRE 412 (432)
T ss_dssp SSSSEEEEECTTSC------------------------HHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECC---SCHH
T ss_pred CcceEEEEECCCCC------------------------HHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEec---CCHH
Confidence 55566666664220 2344555544 47654443332 24578999973 3788
Q ss_pred HHHHHHHHHHHHHH
Q 010125 496 HVVVAWTVVQQHLE 509 (517)
Q Consensus 496 di~~l~~~l~~~~~ 509 (517)
+|+++++.|++...
T Consensus 413 ~l~~~l~rl~~~~~ 426 (432)
T 3ei9_A 413 NILEACRRFKQLYK 426 (432)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887654
No 160
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.85 E-value=8.4e-21 Score=196.66 Aligned_cols=362 Identities=12% Similarity=0.017 Sum_probs=219.6
Q ss_pred CHHHHHHHHHHhhcCCCCCCCCCccceeCCCCCChHHHHHHHHHhcccc-cccccccChhhHHHHHHHHHHHHHHcCCCc
Q 010125 72 SMETILQDVQQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNI-VGFNWISSPAATELENIVMDWLGQMLKLPK 150 (517)
Q Consensus 72 ~~~~il~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~-~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~ 150 (517)
....+.+.+.+.-.++..+.....|+.....++. +..+.+.+...+.. ....|....+..++.+++.+|+....+.+.
T Consensus 35 ~i~~~~~~~~~~~~~~~i~l~~G~y~d~~~~~~~-~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~ 113 (420)
T 4f4e_A 35 PILGLNEAFNADTRPTKVNLGVGVYTNEDGKIPL-LRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLI 113 (420)
T ss_dssp HHHHHHHHHHHCCCSSCEECCCCSCCCTTSCCCC-CHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHHHHhcCCCCcEEeeeeeeECCCCCccC-cHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCcccc
Confidence 3455555555433344444433333322222222 24455555555543 344676667788899999999876544210
Q ss_pred ccccCCCC--ceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCC
Q 010125 151 SFLFSGNG--GGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSS 228 (517)
Q Consensus 151 ~~~~~~~~--~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~ 228 (517)
. .. ..++|+|||+|+..++...... . +++.|++++++|.++..+++..|. +++.+|+..++
T Consensus 114 ~-----~~~~~i~~t~G~t~al~~~~~~~~~~--~-------~gd~Vlv~~p~~~~~~~~~~~~g~---~~~~v~~~~~~ 176 (420)
T 4f4e_A 114 A-----AGRVVTAQALGGTGALKIGADFLRTL--N-------PKAKVAISDPSWENHRALFDMAGF---EVVAYPYYDAK 176 (420)
T ss_dssp H-----TTCEEEEEEEHHHHHHHHHHHHHHHH--C-------TTCCEEEEESCCHHHHHHHHHTTC---CEEEEECEETT
T ss_pred c-----cCceEEEECCccHHHHHHHHHHHHHh--C-------CCCEEEEeCCCcHhHHHHHHHcCC---eEEEeeeeccc
Confidence 1 12 5799999999998875432111 1 556688889999999999999999 99999983223
Q ss_pred CcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc---cChhHHHHHHHHhCCeEEcccccccccccCc-ccccc--
Q 010125 229 SYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV---DPLKPLCDVAKQFGIWVHVDAAYAGSACICP-EFRHF-- 302 (517)
Q Consensus 229 ~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i---dpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~-~~~~~-- 302 (517)
++.+|+++|++++++.. ....+++.+.++|+||.+ +++++|+++|++||+++++|++|+++....+ .....
T Consensus 177 ~~~~d~~~l~~~l~~~~---~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~ 253 (420)
T 4f4e_A 177 TNGVNFDGMLAALNGYE---PGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRL 253 (420)
T ss_dssp TTEECHHHHHHHHTTCC---TTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHH
T ss_pred cCccCHHHHHHHHHhCC---CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHH
Confidence 67999999999997421 123578888999999998 4577999999999999999999977764321 11111
Q ss_pred ccCCCCCCeeeeccccccCC-CCcceEEEE--eCchhHHhhhcCCccccCCccccccccccCCCccccCCCCCCchHHHH
Q 010125 303 IDGVEGADSFSLNAHKWFFA-TLDCCCLWV--KDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWF 379 (517)
Q Consensus 303 ~~g~~~aDsi~~~~hK~l~~-p~~~g~l~~--~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~ 379 (517)
+.+....+.++.+++|.++. ...+|++++ .++............+... +..+ ...+..++
T Consensus 254 ~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~---~~~~~~~~ 316 (420)
T 4f4e_A 254 FAAANLNVFVSSSFSKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRT--------------NYSN---PPTHGGAI 316 (420)
T ss_dssp HHHTTCCEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHT--------------TTSS---CCSHHHHH
T ss_pred HHhcCCCEEEEEeCCccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhc--------------ccCC---CCHHHHHH
Confidence 11223455777889999984 566898864 3333221111100000000 0000 01222222
Q ss_pred HHHHhc--------HHHHHHHHHHHHHHHHHHHHHHhcC---CCeEEecCCCeeEEEEEecCCCcchhhhhhhhhccccc
Q 010125 380 VIRNYG--------VANLRHFLRSHVNMAKLFERLVSGD---KRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLS 448 (517)
Q Consensus 380 ~l~~~g--------~~g~~~~i~~~~~~a~~l~~~l~~~---~~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~ 448 (517)
+...+. .+.++++.++..++++++.+.|+++ +++++. .|+.++++|.-. .
T Consensus 317 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~g~~~~~~~-~----------------- 377 (420)
T 4f4e_A 317 VAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIERDFSFI-NAQRGMFSYSGL-T----------------- 377 (420)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHH-HHSCSSEEECCC-C-----------------
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeE-CCCccEEEEeCC-C-----------------
Confidence 222221 3446778888899999999999886 356544 344455544211 1
Q ss_pred hHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 010125 449 EEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHL 508 (517)
Q Consensus 449 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~ 508 (517)
...+.+.+.+.|+.. .+. .|+++.. . ++++|++++++|.++.
T Consensus 378 --------~~~~~~~l~~~gI~v-~~~-------~Ris~~~-~-~~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 378 --------SAQVDRLREEFGIYA-VST-------GRICVAA-L-NTRNLDVVANAIAAVL 419 (420)
T ss_dssp --------HHHHHHHHHHHCEEC-CTT-------SEEEGGG-C-CTTTHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHhCCEEe-cCC-------CeEEEec-C-CHHHHHHHHHHHHHHh
Confidence 123445555667643 331 2999852 2 4457999999998764
No 161
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.85 E-value=6.1e-20 Score=189.60 Aligned_cols=337 Identities=12% Similarity=0.066 Sum_probs=200.6
Q ss_pred HHHHHHHHhccccc-----ccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHH
Q 010125 108 GFLGEMLSSGFNIV-----GFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVL 182 (517)
Q Consensus 108 ~~~~~~l~~~~n~~-----~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~ 182 (517)
..+.+.+...+..+ ...|....+..++++++++|+.+.+|++... ..+++|+|+|+|+..++.+....
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~-----~~i~~t~G~t~al~~~~~~l~~~-- 121 (417)
T 3g7q_A 49 DYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEP-----QNIALTNGSQSAFFYLFNLFAGR-- 121 (417)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCG-----GGEEEESCHHHHHHHHHHHHSBC--
T ss_pred HHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCc-----ccEEEeCCcHHHHHHHHHHHcCC--
Confidence 44555555554322 1357666778899999999999988865331 37999999999998888776431
Q ss_pred HHhcccCCCCeEEEeC-CCCchHHHHHHHHc----CCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEee
Q 010125 183 NKIGRENISKLIVYGS-DQTHCALQKAAQIV----GIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCAT 257 (517)
Q Consensus 183 ~~~g~~~~~~~~v~~s-~~~H~s~~kaa~~~----G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t 257 (517)
|+++ .+..|+++ .++|..+..++... +.+. .+..++.+. .++.+|+++|+ +.++ +.+|+++
T Consensus 122 ---gd~~-~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~d~~~l~--~~~~------~~~v~~~ 187 (417)
T 3g7q_A 122 ---RADG-STKKVLFPLAPEYIGYADSGLEDDLFVSARP-NIELLPEGQ-FKYHVDFEHLH--IGEE------TGMICVS 187 (417)
T ss_dssp --------CCBEEEESSCCCHHHHHC-----CCEEECCC-EEEEEGGGE-EEEECCGGGCC--CCTT------EEEEEEE
T ss_pred ---CccC-CcceEEEeCCCccccchhhccchhhhccccC-cccccCCcc-cccccCHHHhc--cccC------ceEEEEC
Confidence 1100 11157776 78888777665433 2211 334444321 13578999988 4332 3478888
Q ss_pred ccCCccccccC---hhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCc
Q 010125 258 IGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDP 334 (517)
Q Consensus 258 ~gtt~~G~idp---l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~ 334 (517)
.++|++|.+-| +++|+++|++||+++|+|++|+.+.... .+..........+.+..+++|++..+..+|+++.. +
T Consensus 188 ~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~-~ 265 (417)
T 3g7q_A 188 RPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGI-IFSEARPLWNPNIILCMSLSKLGLPGSRCGIIIAN-D 265 (417)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCC-BCSCCCCCCCTTEEEEEESGGGTCTTSCCEEEECC-H
T ss_pred CCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccc-cccccccCCCCCEEEEEechhccCCCcceEEEEeC-H
Confidence 99999999987 8999999999999999999997532111 11111111235567788999976666778887663 3
Q ss_pred hhHHhhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHH----HH-HHHHHHHHHHHHHHHHhc
Q 010125 335 RALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANL----RH-FLRSHVNMAKLFERLVSG 409 (517)
Q Consensus 335 ~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~----~~-~i~~~~~~a~~l~~~l~~ 409 (517)
... +.+....... +.....+...++...+....+ .+ +.++..++++++.+.|++
T Consensus 266 ~~~-~~~~~~~~~~--------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 324 (417)
T 3g7q_A 266 KTI-TAIANMNGII--------------------SLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRR 324 (417)
T ss_dssp HHH-HHHHHHHHHH--------------------CCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHhhcce--------------------eeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 2221100000 001122333333333221112 22 445566677777777765
Q ss_pred -CC--CeEEecCCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeEC-C------
Q 010125 410 -DK--RFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLG-G------ 479 (517)
Q Consensus 410 -~~--~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-g------ 479 (517)
++ ++++..+.....+.+.+..... ...++.+.|.++|+.+.++..+. +
T Consensus 325 ~l~~~~~~~~~~~~g~~~~~~~~~~~~----------------------~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~ 382 (417)
T 3g7q_A 325 YLSEERCLIHKPEGAIFLWLWFKDLPI----------------------TTELLYQRLKARGVLMVPGHYFFPGLDKPWP 382 (417)
T ss_dssp HCCTTTCEEECCCBSSEEEEECTTCSS----------------------CHHHHHHHHHHTTEECEEGGGGCTTBSSCCG
T ss_pred hcccCCceeeCCCcceEEEEEcCCCCC----------------------CHHHHHHHHHHCCEEEECchhhCCCCccccc
Confidence 45 4676644444455555543110 12456677777887655443221 1
Q ss_pred --EeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHHh
Q 010125 480 --IYAIRFATGATLTEKRHVVVAWTVVQQHLEAFQS 513 (517)
Q Consensus 480 --~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l~~ 513 (517)
..++|+++.. ++++|++++++|.++.+++.+
T Consensus 383 ~~~~~iRis~~~---~~~~i~~~~~~l~~~l~~~~~ 415 (417)
T 3g7q_A 383 HTHQCMRMNYVP---EPDKIEAGVKILAEEIERAWR 415 (417)
T ss_dssp GGGGEEEEESCS---CHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEecC---CHHHHHHHHHHHHHHHHHHHh
Confidence 4689999852 788999999999999887754
No 162
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.84 E-value=4.8e-20 Score=192.66 Aligned_cols=308 Identities=12% Similarity=0.021 Sum_probs=190.7
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchH-HH
Q 010125 128 SPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCA-LQ 206 (517)
Q Consensus 128 sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s-~~ 206 (517)
.+....+|+..++++++++|.+.. .++++|||+||..++.++++ +++.|++++.+|.+ +.
T Consensus 86 ~~~~~~~e~~a~~~la~~~g~~~~--------~v~~~sGs~a~~~a~~~~~~-----------~Gd~Vl~~~~~~~~~~~ 146 (447)
T 3h7f_A 86 CEHVDVVENLARDRAKALFGAEFA--------NVQPHSGAQANAAVLHALMS-----------PGERLLGLDLANGGHLT 146 (447)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCSEE--------ECCCSSHHHHHHHHHHHHCC-----------TTCEEEEECGGGTCCGG
T ss_pred cHHHHHHHHHHHHHHHHHcCCCce--------EEEeCCHHHHHHHHHHHhcC-----------CCCEEEecCcccccccc
Confidence 344456665555999999998753 34478889999888876643 55678888888765 21
Q ss_pred H--HHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEE
Q 010125 207 K--AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVH 284 (517)
Q Consensus 207 k--aa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lh 284 (517)
. .....|.+. .++.+|+++ +++.+|+++|++++++.+ |.+|+++.++++++. ++++|+++|++||+++|
T Consensus 147 ~~~~~~~~g~~~-~~~~~~~~~-~~~~~d~~~l~~~i~~~~-----~~~i~~~~~~~~~~~--~l~~i~~l~~~~g~lli 217 (447)
T 3h7f_A 147 HGMRLNFSGKLY-ENGFYGVDP-ATHLIDMDAVRATALEFR-----PKVIIAGWSAYPRVL--DFAAFRSIADEVGAKLL 217 (447)
T ss_dssp GTCTTSHHHHSS-EEEEECCCT-TTCSCCHHHHHHHHHHHC-----CSEEEEECSSCCSCC--CHHHHHHHHHHHTCEEE
T ss_pred hhhhhhhcCCee-EEEEcCcCc-ccCCcCHHHHHHHHHhcC-----CeEEEEcCCCCCCcc--CHHHHHHHHHHcCCEEE
Confidence 1 112222210 455667664 357899999999997532 236666667766665 99999999999999999
Q ss_pred cccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcC-CccccCCccccccccccCCC
Q 010125 285 VDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLST-NPEYLKNKATESMQVVDYKD 363 (517)
Q Consensus 285 vDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~-~~~yl~~~~~~~~~~~~~~~ 363 (517)
+|++|+.+.......... +..+|+++.++||++++|.+ |+++.++. .. +.+.. ..++..
T Consensus 218 ~Dea~~~g~~~~g~~~~~---~~~~di~~~s~sK~l~G~~g-G~i~~~~~-~~-~~l~~~~~~~~~-------------- 277 (447)
T 3h7f_A 218 VDMAHFAGLVAAGLHPSP---VPHADVVSTTVHKTLGGGRS-GLIVGKQQ-YA-KAINSAVFPGQQ-------------- 277 (447)
T ss_dssp EECTTTHHHHHTTSSCCS---TTTCSEEEEESSGGGCCCSC-EEEEECGG-GH-HHHHHHHTTTTC--------------
T ss_pred EECCchhhhhcCCCCCCC---CCCCcEEEecCCcCCCCCCe-EEEEECHH-HH-HHHhhhcCCccc--------------
Confidence 999986554322221111 24689999999999987765 77776542 21 12210 001100
Q ss_pred ccccCCCC-CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC----CCeEEecC-CCeeEEEEEecCCCcchhh
Q 010125 364 WQITLSRR-FRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGD----KRFEIVFP-CHFAVVCFRVSPSPVLMDK 437 (517)
Q Consensus 364 ~~~~~sr~-~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~----~~~~l~~~-~~~~~v~f~~~~~~~~~~~ 437 (517)
++.. ....++.+++.....++++++.++..++++++.+.|++. ++++++.. ...+++.+.+.+.+.
T Consensus 278 ----~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---- 349 (447)
T 3h7f_A 278 ----GGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDSPL---- 349 (447)
T ss_dssp ----SSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEEEECTTSSC----
T ss_pred ----CCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEEEEcCCCCC----
Confidence 0000 012334445554445578889999999999999999876 57888643 345566666644321
Q ss_pred hhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEE----ee--eeECCEeEEEEEecCC---CCcHHHHHHHHHHHHHHH
Q 010125 438 LKTKYVNCLLSEEEQINEFNRELLESINASGKAYM----TH--AVLGGIYAIRFATGAT---LTEKRHVVVAWTVVQQHL 508 (517)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~----~~--~~~~g~~~lR~~~~~~---~t~~~di~~l~~~l~~~~ 508 (517)
....+.+.|.+.|++.. .. .......++|++.... ..+++|++++++.|.++.
T Consensus 350 ------------------~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l 411 (447)
T 3h7f_A 350 ------------------DGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATAL 411 (447)
T ss_dssp ------------------CHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred ------------------CHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHH
Confidence 01234444555675432 11 1112245799986321 256889999999998875
Q ss_pred H
Q 010125 509 E 509 (517)
Q Consensus 509 ~ 509 (517)
.
T Consensus 412 ~ 412 (447)
T 3h7f_A 412 A 412 (447)
T ss_dssp H
T ss_pred h
Confidence 4
No 163
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.84 E-value=1.2e-19 Score=185.92 Aligned_cols=296 Identities=13% Similarity=0.061 Sum_probs=184.1
Q ss_pred HHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHHcC
Q 010125 134 LENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQIVG 213 (517)
Q Consensus 134 lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~~G 213 (517)
...++.+++++++|.+ ..++++|||+|+..++.+++.......|.. .++..|++...+|++....+..++
T Consensus 79 ~~~~l~~~la~~~g~~---------~v~~~~~gt~a~~~al~~~~~~~~~~~~~~-~~~~~vi~~~~~~~~~~~~~~~~~ 148 (392)
T 3ruy_A 79 QLGPWYEKVAKLTNKE---------MVLPMNTGAEAVETAIKTARRWAYDVKKVE-ANRAEIIVCEDNFHGRTMGAVSMS 148 (392)
T ss_dssp THHHHHHHHHHHHTCS---------EEEEESSHHHHHHHHHHHHHHHHHHTSCCC-TTCCEEEEETTCCCCSSHHHHHTC
T ss_pred HHHHHHHHHHHhcCCC---------EEEEeCcHHHHHHHHHHHHHHhhhhccCCC-CCCcEEEEEcCCcCCCCHhhhhcc
Confidence 4456667888888822 579999999999999988765421111111 134567777777765555444432
Q ss_pred CC----------CCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccC----hhHHHHHHHHh
Q 010125 214 ID----------VKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDP----LKPLCDVAKQF 279 (517)
Q Consensus 214 ~g----------~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idp----l~eI~~i~~~~ 279 (517)
.. ...+..++. .|+++|+++|++++ .+|+++.+++++|.+.| +++|+++|++|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~~~------~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~ 215 (392)
T 3ruy_A 149 SNEEYKRGFGPMLPGIIVIPY-------GDLEALKAAITPNT------AAFILEPIQGEAGINIPPAGFLKEALEVCKKE 215 (392)
T ss_dssp SCTTTTTTCCSCCSSEEEECT-------TCHHHHHHHCCTTE------EEEEECSSBSTTTSBCCCTTHHHHHHHHHHTT
T ss_pred CChhhccccCCCCCCCeeeCc-------ccHHHHHHHhccCe------EEEEEeCccCCCCCccCCHHHHHHHHHHHHHc
Confidence 21 012444442 28999999987443 47888889999999998 99999999999
Q ss_pred CCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCC-CcceEEEEeCchhHHhhhcCCccccCCcccccccc
Q 010125 280 GIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQV 358 (517)
Q Consensus 280 gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p-~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~ 358 (517)
|+++|+|++|+++............++ ..|.++++ |+++.. ...|++++++. . .+.+.. ....
T Consensus 216 ~~~li~De~~~~~~~~g~~~~~~~~~~-~~d~~~~S--K~l~gG~~~~G~~~~~~~-~-~~~~~~---~~~~-------- 279 (392)
T 3ruy_A 216 NVLFVADEIQTGLGRTGKVFACDWDNV-TPDMYILG--KALGGGVFPISCAAANRD-I-LGVFEP---GSHG-------- 279 (392)
T ss_dssp TCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEEEC--GGGGTTTSCCEEEEECHH-H-HTTCCT---TSSC--------
T ss_pred CCEEEEeechhCCCccccchhhhccCC-CCCEEEEc--hhhhCChhhhEEEEECHH-H-Hhhhcc---CCcC--------
Confidence 999999999975432211111111122 46777764 988654 56888887542 2 222211 0000
Q ss_pred ccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC--CCeEEecCCCeeEEEEEecCCCcchh
Q 010125 359 VDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGD--KRFEIVFPCHFAVVCFRVSPSPVLMD 436 (517)
Q Consensus 359 ~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~--~~~~l~~~~~~~~v~f~~~~~~~~~~ 436 (517)
.+.....+...++...+..-..++..++..++++++.+.|+++ +.+... ++..+++.|.+...
T Consensus 280 ---------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~g~~~~~~~~~~----- 344 (392)
T 3ruy_A 280 ---------STFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQLKEIDNPMITEV-RGKGLFIGIELNEP----- 344 (392)
T ss_dssp ---------CSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTCCCTTEEEE-EEETTEEEEEESSC-----
T ss_pred ---------CCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCCceEE-EeeeeEEEEEEcch-----
Confidence 0011123333333333211112567788889999999999886 334433 34456677765432
Q ss_pred hhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 010125 437 KLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHL 508 (517)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~ 508 (517)
..++.+.|.++|+.. .+. +..++|+++ ...++++|+++++++|+++.
T Consensus 345 --------------------~~~l~~~l~~~gi~v-~~~---~~~~iRi~~-~~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 345 --------------------ARPYCEQLKAAGLLC-KET---HENVIRIAP-PLVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp --------------------SHHHHHHHHTTTEEC-CCB---TTTEEEECC-CTTCCHHHHHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHCCcEE-ecC---CCCEEEEEC-CCCCCHHHHHHHHHHHHHHh
Confidence 245667777778643 322 246899997 45678889999999998764
No 164
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.84 E-value=3e-20 Score=191.80 Aligned_cols=329 Identities=11% Similarity=0.040 Sum_probs=206.9
Q ss_pred HHHHHHHHhcc--cccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEE--cCCchHHHHHHHHHHHHHHHH
Q 010125 108 GFLGEMLSSGF--NIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVI--QGTTCEAILCTLTAARDRVLN 183 (517)
Q Consensus 108 ~~~~~~l~~~~--n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~--t~ggt~a~~~al~~ar~~~~~ 183 (517)
..+.+.+...+ ......|...++..++++.+.+|+....|.+-. ....++ |+||++|+..++..++.. .
T Consensus 51 ~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~-----~~~v~~~~t~gg~~a~~~~~~~~~~~--~ 123 (412)
T 1ajs_A 51 PVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQ-----EKRVGGVQSLGGTGALRIGAEFLARW--Y 123 (412)
T ss_dssp HHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH-----TTCEEEEEEEHHHHHHHHHHHHHHHH--S
T ss_pred HHHHHHHHHhhhChhhccCCCCCCCCHHHHHHHHHHHhcCCCCccC-----CCcEEEEECCCcHHHHHHHHHHHHHh--C
Confidence 45556665554 223345656667788998888888665543211 126888 999999998876543321 1
Q ss_pred HhcccCCCC-----eEEEeCCCCchHHHHHHHHcCCCCCC-EEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEee
Q 010125 184 KIGRENISK-----LIVYGSDQTHCALQKAAQIVGIDVKN-FRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCAT 257 (517)
Q Consensus 184 ~~g~~~~~~-----~~v~~s~~~H~s~~kaa~~~G~g~~~-v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t 257 (517)
++ +.|++..++|.++..+++..|+ + ++.+|++.++++.+|+++|++++++. +....+|+.+
T Consensus 124 -------~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~v~~~ 190 (412)
T 1ajs_A 124 -------NGTNNKDTPVYVSSPTWENHNGVFTTAGF---KDIRSYRYWDTEKRGLDLQGFLSDLENA---PEFSIFVLHA 190 (412)
T ss_dssp -------SSSSCCCSCEEEEESCCTHHHHHHHHTTC---SCEEEEECEETTTTEECHHHHHHHHHHS---CTTCEEEEES
T ss_pred -------cCcCCCCCeEEEcCCCcHHHHHHHHHcCC---ceeEEEeeecCCCCccCHHHHHHHHHhC---CCCcEEEEEC
Confidence 33 5677888999999999999999 9 99999853236789999999999752 1123467789
Q ss_pred ccCCcccccc---ChhHHHHHHHHhCCeEEcccccccccccC---c--cccccccCCCCCCeeeeccccccCC-CCcceE
Q 010125 258 IGTTAITAVD---PLKPLCDVAKQFGIWVHVDAAYAGSACIC---P--EFRHFIDGVEGADSFSLNAHKWFFA-TLDCCC 328 (517)
Q Consensus 258 ~gtt~~G~id---pl~eI~~i~~~~gi~lhvDaA~g~~~~~~---~--~~~~~~~g~~~aDsi~~~~hK~l~~-p~~~g~ 328 (517)
.++|+||.+- ++++|+++|++||+++++|++|.++.... + .... +.....-+.+..++||.++. ...+|+
T Consensus 191 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~~~~G~riG~ 269 (412)
T 1ajs_A 191 CAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRY-FVSEGFELFCAQSFSKNFGLYNERVGN 269 (412)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHH-HHHTTCCEEEEEECTTTSCCGGGCEEE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHH-HhccCCcEEEEEecccccCCCCcceEE
Confidence 9999999984 56789999999999999999997765421 1 1111 11111223678899999876 455899
Q ss_pred EEEe--CchhHHhhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHh--c------HHHHHHHHHHHHH
Q 010125 329 LWVK--DPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNY--G------VANLRHFLRSHVN 398 (517)
Q Consensus 329 l~~~--~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~--g------~~g~~~~i~~~~~ 398 (517)
+++. +++...........+... +..+ ...+..+++...+ + .+.++++.++..+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~---~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~ 332 (412)
T 1ajs_A 270 LTVVAKEPDSILRVLSQMQKIVRV--------------TWSN---PPAQGARIVARTLSDPELFHEWTGNVKTMADRILS 332 (412)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHT--------------TTSS---CCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCHHHHHHHHHHHHHHHhc--------------ccCC---CChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHH
Confidence 9882 443211111000000000 0000 1223333333333 1 2366778888899
Q ss_pred HHHHHHHHHhcCC---CeEEecCCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeee
Q 010125 399 MAKLFERLVSGDK---RFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHA 475 (517)
Q Consensus 399 ~a~~l~~~l~~~~---~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~ 475 (517)
+++++.+.|++.+ ++++. .+..+++.|. .. + ...+...+.+.|+.+ .+
T Consensus 333 ~~~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~--~~-----------------~-------~~~~~~~l~~~gv~v-~~- 383 (412)
T 1ajs_A 333 MRSELRARLEALKTPGTWNHI-TDQIGMFSFT--GL-----------------N-------PKQVEYLINQKHIYL-LP- 383 (412)
T ss_dssp HHHHHHHHHHHTTCSSCCHHH-HHCCSSEEEC--CC-----------------C-------HHHHHHHHHTTCEEC-CT-
T ss_pred HHHHHHHHHHhhCCCCCeeEE-cCCCceEEEe--CC-----------------C-------HHHHHHHHHhCCEEe-cC-
Confidence 9999999998874 36554 3444444442 11 0 123344455667543 32
Q ss_pred eECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 010125 476 VLGGIYAIRFATGATLTEKRHVVVAWTVVQQHLEAF 511 (517)
Q Consensus 476 ~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l 511 (517)
.+|++++. .+++++++++++|+++.+++
T Consensus 384 ------~~Ris~~~--~~~~~i~~~~~~l~~~l~~~ 411 (412)
T 1ajs_A 384 ------SGRINMCG--LTTKNLDYVATSIHEAVTKI 411 (412)
T ss_dssp ------TSEEEGGG--CCTTTHHHHHHHHHHHHHHC
T ss_pred ------CcEEEeee--CCHHHHHHHHHHHHHHHHhc
Confidence 26999862 36779999999999887653
No 165
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.84 E-value=4.4e-20 Score=184.73 Aligned_cols=276 Identities=12% Similarity=0.097 Sum_probs=179.8
Q ss_pred HHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHH----HHcC
Q 010125 138 VMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAA----QIVG 213 (517)
Q Consensus 138 v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa----~~~G 213 (517)
+.+.+++++|.+ . .+++++||+|+..++.+... +++.|+++..+|.++..++ +..|
T Consensus 3 l~~~la~~~g~~-~--------~i~~~sG~~a~~~~~~~~~~-----------~g~~v~~~~~~~~~~~~~~~~~~~~~g 62 (331)
T 1pff_A 3 LEGKIAKLEHAE-A--------CAATASGMGAIAASVWTFLK-----------AGDHLISDDCLYGCTHALFEHQLRKFG 62 (331)
T ss_dssp HHHHHHHHHTCS-E--------EEEESSHHHHHHHHHHHHCC-----------TTCEEEEESCCCHHHHHHHHTHHHHTT
T ss_pred HHHHHHHHhCCC-e--------EEEeCChHHHHHHHHHHhcC-----------CCCEEEEcCCCcchHHHHHHHHHHhcC
Confidence 456677888876 2 45666669999887765521 4566888889999887765 4578
Q ss_pred CCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHH-hCCeEEcccccccc
Q 010125 214 IDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQ-FGIWVHVDAAYAGS 292 (517)
Q Consensus 214 ~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~-~gi~lhvDaA~g~~ 292 (517)
+ +++.+|. +|+++|++++++++ .+|+++.++|++|.+.|+++|.++|++ ||+++|+|++|+.+
T Consensus 63 ~---~~~~~~~-------~d~~~l~~~i~~~~------~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~ 126 (331)
T 1pff_A 63 V---EVDFIDM-------AVPGNIEKHLKPNT------RIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASP 126 (331)
T ss_dssp C---EEEEECT-------TSTTHHHHTCCTTE------EEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHH
T ss_pred C---EEEEeCC-------CCHHHHHHhhcCCC------eEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCccc
Confidence 8 8888875 37788998886543 478889999999999999999999999 99999999999876
Q ss_pred cccCccccccccCCCCCCeeeeccccccCCCCc--ceEEEEeCchhHHhhhcCCccc-cCCccccccccccCCCccccCC
Q 010125 293 ACICPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCCLWVKDPRALVSSLSTNPEY-LKNKATESMQVVDYKDWQITLS 369 (517)
Q Consensus 293 ~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~--~g~l~~~~~~~~~~~~~~~~~y-l~~~~~~~~~~~~~~~~~~~~s 369 (517)
....+. . .++|.++.++||+++.|.+ +|++++++++... .+.....+ . +
T Consensus 127 ~~~~~~--~-----~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~-~l~~~~~~~~--------------------~ 178 (331)
T 1pff_A 127 ILTNPL--D-----LGVDIVVHSATKYINGHTDVVAGLVCSRADIIAK-VKSQGIKDIT--------------------G 178 (331)
T ss_dssp HHCCGG--G-----GTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHH-HHHTCCCCCC--------------------C
T ss_pred ccCChh--h-----cCCcEEEEECccccCCCCCceEEEEEeCcHHHHH-HHHHHHHhhc--------------------C
Confidence 543221 1 2689999999999998876 7888876533322 22211100 0 0
Q ss_pred CCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC--------------CeEEecC---CCeeEEEEEecCCC
Q 010125 370 RRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDK--------------RFEIVFP---CHFAVVCFRVSPSP 432 (517)
Q Consensus 370 r~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~--------------~~~l~~~---~~~~~v~f~~~~~~ 432 (517)
.....+..|.+++.+ +.+..+.++..++++.+.+.+++.+ ++++..+ ...++++|.+. .
T Consensus 179 ~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~- 254 (331)
T 1pff_A 179 AIISPHDAWLITRGT--LTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD-G- 254 (331)
T ss_dssp CCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS-S-
T ss_pred CCCCHHHHHHHHcCc--chHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC-C-
Confidence 011223444433322 2334455555566666666665433 2222211 13567888764 2
Q ss_pred cchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeee--e----------------------ECC--EeEEEEE
Q 010125 433 VLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHA--V----------------------LGG--IYAIRFA 486 (517)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~--~----------------------~~g--~~~lR~~ 486 (517)
...+.+.+.+.|+...... . ..| ..++|++
T Consensus 255 ------------------------~~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis 310 (331)
T 1pff_A 255 ------------------------LEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLS 310 (331)
T ss_dssp ------------------------HHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEE
T ss_pred ------------------------HHHHHHHHHhCCCceeccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEE
Confidence 1345556666776332110 0 011 3689999
Q ss_pred ecCCCCcHHHHHHHHHHHHH
Q 010125 487 TGATLTEKRHVVVAWTVVQQ 506 (517)
Q Consensus 487 ~~~~~t~~~di~~l~~~l~~ 506 (517)
+. ..++++++++++++|++
T Consensus 311 ~~-~~~t~~~i~~l~~~l~~ 329 (331)
T 1pff_A 311 VG-CENVQDIIDDLKQALDL 329 (331)
T ss_dssp CC-SSCHHHHHHHHHHHHHT
T ss_pred Ee-cCCHHHHHHHHHHHHHH
Confidence 95 57788899999998865
No 166
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.84 E-value=5.8e-20 Score=188.94 Aligned_cols=361 Identities=10% Similarity=-0.003 Sum_probs=218.6
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCccceeCCCCCChHHHHHHHHHhccc-ccccccccChhhHHHHHHHHHHHHHHcCCCcc
Q 010125 73 METILQDVQQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFN-IVGFNWISSPAATELENIVMDWLGQMLKLPKS 151 (517)
Q Consensus 73 ~~~il~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n-~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~ 151 (517)
.-.+.+.+...-.++..+.....|+++...++..+. +.+.+..... .....|....+..++.+.+++|+....|.+-.
T Consensus 15 i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~-v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~ 93 (401)
T 7aat_A 15 ILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNC-VRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFK 93 (401)
T ss_dssp HHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHH-HHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH
T ss_pred hHHHHHHHhhCCCCCceeeeeeeEECCCCCEechHH-HHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCccccc
Confidence 344455555433344444444445455443333333 3443333332 23456666667888999999999877665311
Q ss_pred cccCCCCceEE--cCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCC
Q 010125 152 FLFSGNGGGVI--QGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSS 229 (517)
Q Consensus 152 ~~~~~~~~g~~--t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~ 229 (517)
....++ |+|||+|+..++.+.+... .+++.|++++++|.++..+++..|. +++.+|++..++
T Consensus 94 -----~~~i~~v~t~G~~~al~~~~~~l~~~~--------~~gd~Vlv~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~ 157 (401)
T 7aat_A 94 -----SGRYVTVQGISGTGSLRVGANFLQRFF--------KFSRDVYLPKPSWGNHTPIFRDAGL---QLQAYRYYDPKT 157 (401)
T ss_dssp -----TTCEEEEEEEHHHHHHHHHHHHHHHHC--------TTCCEEEEEESCCTTHHHHHHHTTC---EEEEEECEETTT
T ss_pred -----cCceEEEecCcchHHHHHHHHHHHHhc--------cCCCEEEEcCCCchhHHHHHHHcCC---eeEeeeeecccc
Confidence 125666 9999999988876654210 1566788888999999999999999 999999864446
Q ss_pred cccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc---cChhHHHHHHHHhCCeEEcccccccccccCcc-----ccc
Q 010125 230 YGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV---DPLKPLCDVAKQFGIWVHVDAAYAGSACICPE-----FRH 301 (517)
Q Consensus 230 ~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i---dpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~-----~~~ 301 (517)
+.+|++.+++.+++. ...+.+|+.+.++|+||.+ +++++|+++|++||+++++|.+|+.+...... ...
T Consensus 158 ~~~d~~~l~~~l~~~---~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~ 234 (401)
T 7aat_A 158 CSLDFTGAMEDISKI---PEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRH 234 (401)
T ss_dssp TEECHHHHHHHHTTS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHH
T ss_pred CccCHHHHHHHHHhC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHH
Confidence 899999999988752 1234688889999999966 55889999999999999999999776543210 111
Q ss_pred cccCCCCCCeeeeccccccCCC-CcceEEEEe--CchhHHhhhcCCccccCCccccccccccCCCccccCCCCCCchHHH
Q 010125 302 FIDGVEGADSFSLNAHKWFFAT-LDCCCLWVK--DPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLW 378 (517)
Q Consensus 302 ~~~g~~~aDsi~~~~hK~l~~p-~~~g~l~~~--~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~ 378 (517)
. .....-..++.++||.++.| ..+|++++. ++............+.... + . ...+....
T Consensus 235 ~-~~~~~~~i~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~-------------~-~---~~~~~~~~ 296 (401)
T 7aat_A 235 F-IEQGIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPM-------------Y-S---NPPMNGAR 296 (401)
T ss_dssp H-HHTTCCCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHH-------------H-S---SCCHHHHH
T ss_pred H-HhcCCcEEEEecCCcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhc-------------c-C---CCChHHHH
Confidence 1 11223456778899999743 557888862 3331110000000000000 0 0 00122223
Q ss_pred HHHHHh--c------HHHHHHHHHHHHHHHHHHHHHHhcCC---CeEEecCCCeeEEEEEecCCCcchhhhhhhhhcccc
Q 010125 379 FVIRNY--G------VANLRHFLRSHVNMAKLFERLVSGDK---RFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLL 447 (517)
Q Consensus 379 ~~l~~~--g------~~g~~~~i~~~~~~a~~l~~~l~~~~---~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~ 447 (517)
.+...+ + .+.++++.++..++++++.+.|++.. ++++. +|+.+++.|.-.+
T Consensus 297 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~~~~----------------- 358 (401)
T 7aat_A 297 IASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHI-TDQIGMFCFTGLK----------------- 358 (401)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHH-HHCCSSEEECCCC-----------------
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcee-cCCcceEEecCCC-----------------
Confidence 332222 1 34466777888889999999998762 34433 3445555552111
Q ss_pred chHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 010125 448 SEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHL 508 (517)
Q Consensus 448 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~ 508 (517)
.+.+...+.+.|+.. .+ .+|++++. .+++ +|+++++.|+++.
T Consensus 359 ---------~~~~~~ll~~~gi~v-~~-------~~Ris~~~-~~~~-~i~~~~~~l~~~~ 400 (401)
T 7aat_A 359 ---------PEQVERLTKEFSIYM-TK-------DGRISVAG-VASS-NVGYLAHAIHQVT 400 (401)
T ss_dssp ---------HHHHHHHHHHHCEEC-CT-------TCEEEGGG-CCTT-THHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHhCCEec-cC-------CCeEEecc-CChh-hHHHHHHHHHHHh
Confidence 122222334557543 22 26999853 4444 6999999998764
No 167
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.84 E-value=2.1e-19 Score=184.27 Aligned_cols=213 Identities=13% Similarity=0.132 Sum_probs=152.9
Q ss_pred HHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHH----HHH
Q 010125 136 NIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKA----AQI 211 (517)
Q Consensus 136 ~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~ka----a~~ 211 (517)
.++.+++++++|.+ ..+++++|++|+..++.+... +++.|+++...|.+.... ++.
T Consensus 62 ~~l~~~la~~~g~~---------~~i~~~sG~~ai~~~~~~~~~-----------~gd~vl~~~~~y~~~~~~~~~~~~~ 121 (389)
T 3acz_A 62 EQFEEMVCSIEGAA---------GSAAFGSGMGAISSSTLAFLQ-----------KGDHLIAGDTLYGCTVSLFTHWLPR 121 (389)
T ss_dssp HHHHHHHHHHHTCS---------EEEEESSHHHHHHHHHTTTCC-----------TTCEEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC---------eEEEeCCHHHHHHHHHHHHhC-----------CCCEEEEeCCCchHHHHHHHHHHHH
Confidence 34456677777765 357778889999877765421 456788888999987665 577
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEccccccc
Q 010125 212 VGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAG 291 (517)
Q Consensus 212 ~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~ 291 (517)
.|+ +++.+|. .|+++|+++|++++ .+|+++.+++++|.+.|+++|+++|++||+++|+|++|+.
T Consensus 122 ~g~---~~~~v~~-------~d~~~l~~~i~~~~------~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~ 185 (389)
T 3acz_A 122 FGI---EVDLIDT-------SDVEKVKAAWKPNT------KMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTS 185 (389)
T ss_dssp TTC---EEEEECT-------TCHHHHHHTCCTTE------EEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTC
T ss_pred cCC---EEEEECC-------CCHHHHHHhcCCCC------eEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcc
Confidence 888 8988875 38899999987644 3788899999999999999999999999999999999987
Q ss_pred ccccCccccccccCCCCCCeeeeccccccCCCCc--ceEEEEeCchhHHhhhcCCccccCCccccccccccCCCccccCC
Q 010125 292 SACICPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLS 369 (517)
Q Consensus 292 ~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~--~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~s 369 (517)
+....+ . . .++|+++.++||+++.|.+ +|++++++.+... .+.....+. +
T Consensus 186 ~~~~~~-~----~--~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~-~l~~~~~~~--------------------g 237 (389)
T 3acz_A 186 PCFLKP-L----E--LGADIALHSVSKYINGHGDVIGGVSSAKTAEDIA-TIKFYRKDA--------------------G 237 (389)
T ss_dssp TTTCCG-G----G--TTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHH-HHHHHHHHH--------------------C
T ss_pred ccccCc-c----c--cCCeEEEECChhhccCCCCceeEEEEECcHHHHH-HHHHHHHhc--------------------C
Confidence 754221 1 1 2689999999999998877 6888887623322 221000000 0
Q ss_pred CCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 010125 370 RRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFE 414 (517)
Q Consensus 370 r~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~ 414 (517)
........|++++.+ +.+..++++..++++.+.+.+++.+.++
T Consensus 238 ~~~~~~~~~~~~~~l--~~l~~r~~~~~~~~~~l~~~l~~~~~v~ 280 (389)
T 3acz_A 238 SLMAPMDAFLCARGM--KTLPIRMQIHMENGLKVAKFLEQHEKIV 280 (389)
T ss_dssp CCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHCTTEE
T ss_pred CCCCHHHHHHHHcCc--cHHHHHHHHHHHHHHHHHHHHHcCCCee
Confidence 012335566666544 4456677888888999999998876554
No 168
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.84 E-value=2.3e-19 Score=186.25 Aligned_cols=318 Identities=10% Similarity=-0.018 Sum_probs=197.6
Q ss_pred cccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHH--HHHHHHHHHHHHHhc----ccCCCCeEEE
Q 010125 123 FNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAIL--CTLTAARDRVLNKIG----RENISKLIVY 196 (517)
Q Consensus 123 ~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~--~al~~ar~~~~~~~g----~~~~~~~~v~ 196 (517)
..|....+..++++.+.+|+ +++++ ..++|+|+++++. .++.+..+.. . | +...+++.|+
T Consensus 72 ~~Y~~~~g~~~lr~~ia~~~----~~~~~-------~i~~t~G~~~al~~~~~~~~l~~~~--~-g~~~~~~~~~gd~V~ 137 (427)
T 3ppl_A 72 RNYGGLDGIVDIRQIWADLL----GVPVE-------QVLAGDASSLNIMFDVISWSYIFGN--N-DSVQPWSKEETVKWI 137 (427)
T ss_dssp TSSCCSSCCHHHHHHHHHHH----TSCGG-------GEEECSSCHHHHHHHHHHHHHHHCC--T-TCSSCGGGSSCCEEE
T ss_pred cCCCCCCCcHHHHHHHHHHh----CCCcc-------eEEEeCCcHHHHHHHHHHHHHhccC--C-cccccccCCCCCEEE
Confidence 45655556677777666665 67654 6899999999984 4554443200 0 0 0000156788
Q ss_pred eCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEee-ccCCccccccChh---HH
Q 010125 197 GSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCAT-IGTTAITAVDPLK---PL 272 (517)
Q Consensus 197 ~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t-~gtt~~G~idpl~---eI 272 (517)
+.+++|.++..+++..|+ +++.+|++. ++ +|+++|+++++.. .+.+|+++ .++|+||.+-|.+ +|
T Consensus 138 v~~p~y~~~~~~~~~~g~---~~~~v~~~~--~g-~d~~~l~~~l~~~-----~~~~v~~~p~~~NPtG~~~~~~~~~~l 206 (427)
T 3ppl_A 138 CPVPGYDRHFSITERFGF---EMISVPMNE--DG-PDMDAVEELVKNP-----QVKGMWVVPVFSNPTGFTVTEDVAKRL 206 (427)
T ss_dssp EEESCCHHHHHHHHHTTC---EEEEEEEET--TE-ECHHHHHHHTTST-----TEEEEEECCSSCTTTCCCCCHHHHHHH
T ss_pred EcCCCcHHHHHHHHHcCC---EEEEeCCCC--CC-CCHHHHHHHHhcC-----CCeEEEECCCCCCCCCccCCHHHHHHH
Confidence 899999999999999999 999999985 33 9999999998421 12355544 7899999998776 88
Q ss_pred HHHH-HHhCCeEEcccccccccccCcccc--cccc-----CCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCC
Q 010125 273 CDVA-KQFGIWVHVDAAYAGSACICPEFR--HFID-----GVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTN 344 (517)
Q Consensus 273 ~~i~-~~~gi~lhvDaA~g~~~~~~~~~~--~~~~-----g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~ 344 (517)
+++| ++||+++|+|++|+...+...... .... +....+.+..+++|+++.+.++|+++..+ .. ...+...
T Consensus 207 ~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~-~l-~~~~~~~ 284 (427)
T 3ppl_A 207 SAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSA-EN-RKWYTGH 284 (427)
T ss_dssp HHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCH-HH-HHHHHHH
T ss_pred HHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCH-HH-HHHHHHH
Confidence 8888 999999999999987543221100 1111 12345677889999977778889877643 22 2222110
Q ss_pred ccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcH-----HHHHHHHHHHHHHHHHHHHHHh----cCCCeEE
Q 010125 345 PEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGV-----ANLRHFLRSHVNMAKLFERLVS----GDKRFEI 415 (517)
Q Consensus 345 ~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~-----~g~~~~i~~~~~~a~~l~~~l~----~~~~~~l 415 (517)
..+. +.....+..+++...+.. +.++++.+...++.+++.+.|. ..+++++
T Consensus 285 ~~~~--------------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~ 344 (427)
T 3ppl_A 285 AGIR--------------------GIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQW 344 (427)
T ss_dssp HHHH--------------------CSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEE
T ss_pred hhcc--------------------cCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEE
Confidence 0000 011133344444444332 2334444445555555555553 3445666
Q ss_pred ecCCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeee-eE-----CCEeEEEEEecC
Q 010125 416 VFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHA-VL-----GGIYAIRFATGA 489 (517)
Q Consensus 416 ~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~~-----~g~~~lR~~~~~ 489 (517)
..+....++++.+... ...++.+.|.++|+.+.+.. .+ .+..++|+++..
T Consensus 345 ~~p~~g~~~~~~~~~~------------------------~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~ 400 (427)
T 3ppl_A 345 TVPAGGYFISLDVVPG------------------------TASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSL 400 (427)
T ss_dssp CCCSBSSCEEEECSTT------------------------CHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSS
T ss_pred eCCCccEEEEEECCcc------------------------hHHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCC
Confidence 5444444556665432 02456667777786554412 11 246789999943
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHh
Q 010125 490 TLTEKRHVVVAWTVVQQHLEAFQS 513 (517)
Q Consensus 490 ~~t~~~di~~l~~~l~~~~~~l~~ 513 (517)
. ++++|++++++|.++.+++..
T Consensus 401 -~-~~~~i~~~~~~l~~~l~~~~~ 422 (427)
T 3ppl_A 401 -P-PVEELEVAMDGVATCVLLAAA 422 (427)
T ss_dssp -S-CHHHHHHHHHHHHHHHHHHHH
T ss_pred -C-CHHHHHHHHHHHHHHHHHHHH
Confidence 3 788999999999998877643
No 169
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.84 E-value=1.7e-19 Score=186.84 Aligned_cols=319 Identities=11% Similarity=0.010 Sum_probs=194.2
Q ss_pred ccc-ccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHH--HHHHHHHHHHHHHhcccC---CCCeEEE
Q 010125 123 FNW-ISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAIL--CTLTAARDRVLNKIGREN---ISKLIVY 196 (517)
Q Consensus 123 ~~~-~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~--~al~~ar~~~~~~~g~~~---~~~~~v~ 196 (517)
..| ...++..++++.+.+ +++.+++ ..++|+|+++++. .++.+..+.. + |.+. .+++.|+
T Consensus 63 ~~Yp~~~~g~~~lr~~ia~----~~~~~~~-------~i~~t~G~~~al~~~~~~~~l~~~~--~-g~~~~~~~~gd~Vl 128 (423)
T 3ez1_A 63 RNYPGGVAGLPSARALFAG----YLDVKAE-------NVLVWNNSSLELQGLVLTFALLHGV--R-GSTGPWLSQTPKMI 128 (423)
T ss_dssp TSSCSCTTCCHHHHHHHHH----HTTSCGG-------GEEECSSCHHHHHHHHHHHHHHTCC--T-TCSSCGGGGCCEEE
T ss_pred hCCCCCCCChHHHHHHHHH----HhCCChh-------hEEEeCCcHHHHHHHHHHHHHhccC--C-CccccccCCCCEEE
Confidence 456 555556666665554 4577655 6899999999986 5555443200 0 1000 0046788
Q ss_pred eCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEe-eccCCccccccChh---HH
Q 010125 197 GSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCA-TIGTTAITAVDPLK---PL 272 (517)
Q Consensus 197 ~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~-t~gtt~~G~idpl~---eI 272 (517)
+..++|..+..+++..|+ +++.+|++. + .+|+++|++++++.. .+.+|++ ..++|+||.+-|.+ +|
T Consensus 129 v~~p~y~~~~~~~~~~g~---~~~~v~~~~--~-g~d~~~l~~~l~~~~----~~~~v~~~~~~~NPtG~~~~~~~l~~l 198 (423)
T 3ez1_A 129 VTVPGYDRHFLLLQTLGF---ELLTVDMQS--D-GPDVDAVERLAGTDP----SVKGILFVPTYSNPGGETISLEKARRL 198 (423)
T ss_dssp EEESCCHHHHHHHHHHTC---EEEEEEEET--T-EECHHHHHHHHHSCT----TEEEEEECSSSCTTTCCCCCHHHHHHH
T ss_pred EcCCCcHHHHHHHHHcCC---EEEeccCCC--C-CCCHHHHHHHHhhCC----CceEEEECCCCCCCCCcCCCHHHHHHH
Confidence 889999999999999999 999999985 2 499999999995211 1335544 47899999998776 88
Q ss_pred HHHH-HHhCCeEEcccccccccccC-c--ccccccc-----CCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcC
Q 010125 273 CDVA-KQFGIWVHVDAAYAGSACIC-P--EFRHFID-----GVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLST 343 (517)
Q Consensus 273 ~~i~-~~~gi~lhvDaA~g~~~~~~-~--~~~~~~~-----g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~ 343 (517)
+++| ++||+++|+|++|+...+.. . .....+. +....+.+..++||++..+.++|+++.++. .. ..+..
T Consensus 199 ~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~-~~-~~~~~ 276 (423)
T 3ez1_A 199 AGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAGAGLGFVASSED-NI-RWLSK 276 (423)
T ss_dssp HTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCSSSSCEEEEECHH-HH-HHHHH
T ss_pred HHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhccCCcceEEEEeCHH-HH-HHHHH
Confidence 8888 99999999999997533322 1 1111111 122455778899999777788998877543 22 22211
Q ss_pred CccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcH------HHHHHHHHHHHHHHHH----HHHHHhcCC-C
Q 010125 344 NPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGV------ANLRHFLRSHVNMAKL----FERLVSGDK-R 412 (517)
Q Consensus 344 ~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~------~g~~~~i~~~~~~a~~----l~~~l~~~~-~ 412 (517)
...+. +.....+..+++...+.. +.+++..+...++.+. |.+.+.+++ +
T Consensus 277 ~~~~~--------------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 336 (423)
T 3ez1_A 277 YLGAQ--------------------SIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEY 336 (423)
T ss_dssp HHHHS--------------------CSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSS
T ss_pred HHhhh--------------------ccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCc
Confidence 00000 011122333333333322 2233333333334444 444454454 4
Q ss_pred eEEecCCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEe-eeeE-----CCEeEEEEE
Q 010125 413 FEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMT-HAVL-----GGIYAIRFA 486 (517)
Q Consensus 413 ~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~~~-----~g~~~lR~~ 486 (517)
+++..+....++.+.+.... ...+.+.+.+.|+...+ +..+ .+..++|++
T Consensus 337 ~~~~~p~~g~~~~~~~~~~~------------------------~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis 392 (423)
T 3ez1_A 337 ATWTLPKGGYFISLDTAEPV------------------------ADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLA 392 (423)
T ss_dssp EEECCCSBSSCEEEEESSSC------------------------HHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEEC
T ss_pred eEEeCCCccEEEEEECCCCc------------------------HHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEE
Confidence 77654444455666664320 24566667777865544 2111 235789999
Q ss_pred ecCCCCcHHHHHHHHHHHHHHHHHHHh
Q 010125 487 TGATLTEKRHVVVAWTVVQQHLEAFQS 513 (517)
Q Consensus 487 ~~~~~t~~~di~~l~~~l~~~~~~l~~ 513 (517)
+.. . ++++|++++++|.++.+++..
T Consensus 393 ~~~-~-~~~~i~~~~~~l~~~l~~~~~ 417 (423)
T 3ez1_A 393 PTR-P-PVEEVRTAMQVVAACIRLATE 417 (423)
T ss_dssp CSS-S-CHHHHHHHHHHHHHHHHHHHH
T ss_pred cCC-C-CHHHHHHHHHHHHHHHHHHHH
Confidence 843 3 788999999999999877654
No 170
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.84 E-value=2.6e-19 Score=185.62 Aligned_cols=249 Identities=14% Similarity=0.128 Sum_probs=163.8
Q ss_pred HHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHH----HHc
Q 010125 137 IVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAA----QIV 212 (517)
Q Consensus 137 ~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa----~~~ 212 (517)
++.+.+++++|.+. .+++++||+|+..++.+... +++.|+++..+|.+...++ +..
T Consensus 62 ~l~~~la~~~g~~~---------~v~~~sGt~A~~~~l~~~~~-----------~gd~vi~~~~~~~~~~~~~~~~~~~~ 121 (421)
T 2ctz_A 62 VLEKRLAALEGGKA---------ALATASGHAAQFLALTTLAQ-----------AGDNIVSTPNLYGGTFNQFKVTLKRL 121 (421)
T ss_dssp HHHHHHHHHHTCSE---------EEEESSHHHHHHHHHHHHCC-----------TTCEEEECSCCCHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHhCCCc---------eEEecCHHHHHHHHHHHHhC-----------CCCEEEEeCCCchHHHHHHHHHHHHc
Confidence 34455666677652 36667779999888876521 5667899999999987765 677
Q ss_pred CCCCCCEEEE-ecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEccccc-c
Q 010125 213 GIDVKNFRAI-KTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAY-A 290 (517)
Q Consensus 213 G~g~~~v~~v-p~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~-g 290 (517)
|+ +++.+ +.+ |+++|+++|++++ .+|+++.+++++|.+.|+++|+++|++||+++|+|++| +
T Consensus 122 g~---~~~~~~~~~-------d~~~l~~~i~~~~------~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~ 185 (421)
T 2ctz_A 122 GI---EVRFTSREE-------RPEEFLALTDEKT------RAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGM 185 (421)
T ss_dssp TC---EEEECCTTC-------CHHHHHHHCCTTE------EEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGG
T ss_pred CC---EEEEECCCC-------CHHHHHHhhccCC------eEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccc
Confidence 88 88888 642 8999999987644 47888999999999999999999999999999999999 6
Q ss_pred cccccCccccccccCCCCCCeeeeccccccCCCCc-ceEEEEeC--chh----HHhhhcCCccccCCccccccccccCC-
Q 010125 291 GSACICPEFRHFIDGVEGADSFSLNAHKWFFATLD-CCCLWVKD--PRA----LVSSLSTNPEYLKNKATESMQVVDYK- 362 (517)
Q Consensus 291 ~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~-~g~l~~~~--~~~----~~~~~~~~~~yl~~~~~~~~~~~~~~- 362 (517)
.+.. .... + .++|++++++||+++.|.+ .|.+++.+ ... +.........|.............+.
T Consensus 186 ~g~~-~~~~-----~-~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~ 258 (421)
T 2ctz_A 186 GGYL-LRPL-----A-WGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIV 258 (421)
T ss_dssp GGTS-CCGG-----G-GTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHH
T ss_pred cccc-CCcc-----c-cCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHH
Confidence 5532 1111 1 1689999999999998753 67777752 211 11111111111100000000000000
Q ss_pred --Cc--cccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC------------------CC
Q 010125 363 --DW--QITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFP------------------CH 420 (517)
Q Consensus 363 --~~--~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~------------------~~ 420 (517)
.+ ....+.....+..|+.++ +.+.+..++++..++++++.+.|++.|+++.+.. ..
T Consensus 259 ~~r~~~~~~~g~~~~~~~a~~~~~--~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~~~~ 336 (421)
T 2ctz_A 259 KARVDGLRDQGQALGPFEAWVVLL--GMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKP 336 (421)
T ss_dssp HHHHTHHHHHCCCCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHc--CcchHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhccCCC
Confidence 00 001122344556666554 4455677888888999999999999999987632 23
Q ss_pred eeEEEEEecC
Q 010125 421 FAVVCFRVSP 430 (517)
Q Consensus 421 ~~~v~f~~~~ 430 (517)
.++++|.+.+
T Consensus 337 g~ivsf~l~~ 346 (421)
T 2ctz_A 337 GAVLTFGLKG 346 (421)
T ss_dssp CSEEEEEETT
T ss_pred ceEEEEEeCC
Confidence 5688998854
No 171
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.84 E-value=5.8e-19 Score=178.00 Aligned_cols=280 Identities=9% Similarity=-0.035 Sum_probs=189.0
Q ss_pred HHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHHcCCCC
Q 010125 137 IVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQIVGIDV 216 (517)
Q Consensus 137 ~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~ 216 (517)
++++++++++|.+++ ..++|+|+|+|+..++.+.. ++.|+++.++|.++..+++..|+
T Consensus 54 ~lr~~la~~~~~~~~-------~i~~t~g~~~al~~~~~~l~-------------gd~Vi~~~p~~~~~~~~~~~~g~-- 111 (350)
T 3fkd_A 54 TLRQMLAKRNSVDNN-------AILVTNGPTAAFYQIAQAFR-------------GSRSLIAIPSFAEYEDACRMYEH-- 111 (350)
T ss_dssp HHHHHHHHHTTCCGG-------GEEEESHHHHHHHHHHHHTT-------------TCEEEEEESCCHHHHHHHHHTTC--
T ss_pred HHHHHHHHHhCcCHH-------HEEEcCCHHHHHHHHHHHHC-------------CCEEEEeCCCcHHHHHHHHHcCC--
Confidence 456778888888765 68999999999987776542 34578888999999999999999
Q ss_pred CCEEEEec-CCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhC-CeEEcccccccccc
Q 010125 217 KNFRAIKT-TKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFG-IWVHVDAAYAGSAC 294 (517)
Q Consensus 217 ~~v~~vp~-d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~g-i~lhvDaA~g~~~~ 294 (517)
+++.+|+ +.. ..+++ ++ +.+|+++.++|++|.+-|+++|.++++.++ .++++|++|+.+..
T Consensus 112 -~~~~v~~~~~~--~~~~~--------~~------~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~~~~~ 174 (350)
T 3fkd_A 112 -EVCFYPSNEDI--GEADF--------SN------MDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFTT 174 (350)
T ss_dssp -EEEEEETTSCG--GGSCC--------TT------CSEEEEESSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTTTSCS
T ss_pred -eEEEEecCCcc--ccCcc--------CC------CCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchhhhcc
Confidence 9999998 642 24444 22 337788999999999999999999999886 79999999976543
Q ss_pred cCccccccccCCCCCCeeeeccccccC-CCCcceEEEEeCchhHHhhhcCCccccCCccccccccccCCCccccCCCCCC
Q 010125 295 ICPEFRHFIDGVEGADSFSLNAHKWFF-ATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFR 373 (517)
Q Consensus 295 ~~~~~~~~~~g~~~aDsi~~~~hK~l~-~p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~ 373 (517)
........+. ....+.++.+++|+++ .+..+|++++ +++.. +.+...... + ...
T Consensus 175 ~~~~~~~~~~-~~~~~i~~~S~sK~~~~~G~r~G~~~~-~~~~~-~~~~~~~~~----------------~------~~~ 229 (350)
T 3fkd_A 175 EEVIRPADIK-GRKNLVMVYSFSHAYGIPGLRIGYIVA-NKDFM-KRVAAFSTP----------------W------AVN 229 (350)
T ss_dssp SCCCCGGGGT-TCSSEEEEEESHHHHSCGGGCCEEEEC-CHHHH-HHHHTTCCT----------------T------CSC
T ss_pred CcchhhHHhh-cCCCEEEEecCchhccCcchheEeEEe-CHHHH-HHHHHhCCC----------------C------CCC
Confidence 2211111111 1234477889999998 5577898887 44433 222211000 0 112
Q ss_pred chHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCeeEEEEEecCCCcchhhhhhhhhccccchHHH
Q 010125 374 SLKLWFVIRNYGVA-NLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQ 452 (517)
Q Consensus 374 al~~~~~l~~~g~~-g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (517)
.+..+++...+... .+.+.+++..++++++.+.|+++|++++. ++..+++.+++...
T Consensus 230 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~--------------------- 287 (350)
T 3fkd_A 230 ALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNRLDGVEVH-PSGTTFFLLRLKKG--------------------- 287 (350)
T ss_dssp HHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHSTTEEEC-CCSSSEEEEEESSS---------------------
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEC-CCCCcEEEEECCCC---------------------
Confidence 34444444443221 13344455558899999999988899875 55666666776532
Q ss_pred HHHHHHHHHHHHHh-cCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 010125 453 INEFNRELLESINA-SGKAYMTHAVLG--GIYAIRFATGATLTEKRHVVVAWTVVQQHLE 509 (517)
Q Consensus 453 ~~~~~~~l~~~l~~-~g~~~~~~~~~~--g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~ 509 (517)
...++.+.|.+ .|+...++..+. +..++|++++ +++++++++++|+++.+
T Consensus 288 ---~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~----~~~~~~~l~~al~~~~~ 340 (350)
T 3fkd_A 288 ---TAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ----RPAQNQLFIKALETFLE 340 (350)
T ss_dssp ---CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC----CHHHHHHHHHHHHHHHT
T ss_pred ---CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC----CHHHHHHHHHHHHHHHH
Confidence 13466777777 776544443332 2568999984 66789999988887754
No 172
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.83 E-value=3.3e-20 Score=191.48 Aligned_cols=358 Identities=8% Similarity=-0.021 Sum_probs=218.0
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCccceeCCCCCChHHHHHHHHHh-cccc-cccccccChhhHHHHHHHHHHHHHHcCCCc
Q 010125 73 METILQDVQQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSS-GFNI-VGFNWISSPAATELENIVMDWLGQMLKLPK 150 (517)
Q Consensus 73 ~~~il~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~-~~n~-~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~ 150 (517)
...+.+.+.+.-.++..+..+..++++..... ++..+.+.+.. .+.. ....|...++..++++.+.+|+....|.+-
T Consensus 16 ~~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~-~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~ 94 (412)
T 1yaa_A 16 LFGIKQRYGQDQRATKVDLGIGAYRDDNGKPW-VLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDAL 94 (412)
T ss_dssp THHHHHHHHTCCCSSCEECSSCCCBCTTSCBC-CCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHhcCCCCCeEEEeeeeeeCCCCCCC-CcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHHHHHHHhcCCCCCC
Confidence 44555555543123334444444444433223 33455666665 5542 234565666788899999999976655321
Q ss_pred ccccCCCCceEE--cCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEec-CCC
Q 010125 151 SFLFSGNGGGVI--QGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKT-TKS 227 (517)
Q Consensus 151 ~~~~~~~~~g~~--t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~-d~~ 227 (517)
. ....++ |+|||+|+..++...+.. . +++.|+++.++|.++..+++..|+ +++.+|+ ++
T Consensus 95 ~-----~~~i~~~~t~g~~~a~~~~~~~~~~~--~-------~gd~Vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~~- 156 (412)
T 1yaa_A 95 Q-----EDRVISVQSLSGTGALHISAKFFSKF--F-------PDKLVYLSKPTWANHMAIFENQGL---KTATYPYWAN- 156 (412)
T ss_dssp H-----TTCEEEEEEEHHHHHHHHHHHHHHHH--C-------TTCCEEEEESCCTTHHHHHHTTTC---CEEEEECEET-
T ss_pred C-----cceEEEEeccchHhHHHHHHHHHHHh--C-------CCCEEEEeCCCCccHHHHHHHcCc---eEEEEeeecC-
Confidence 1 126788 999999998775433221 1 445577888999999999999999 9999998 53
Q ss_pred CCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccC---hhHHHHHHHHhCCeEEcccccccccccC---c--cc
Q 010125 228 SSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIC---P--EF 299 (517)
Q Consensus 228 ~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idp---l~eI~~i~~~~gi~lhvDaA~g~~~~~~---~--~~ 299 (517)
+++.+|+++|++++++.. ....+++.+.++|+||.+-+ +++|+++|++||+++++|++|+.+.... + ..
T Consensus 157 ~~~~~d~~~l~~~l~~~~---~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~ 233 (412)
T 1yaa_A 157 ETKSLDLNGFLNAIQKAP---EGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAV 233 (412)
T ss_dssp TTTEECHHHHHHHHHHSC---TTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHH
T ss_pred CCCccCHHHHHHHHHhCC---CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHH
Confidence 257899999999997531 11245566999999999854 6788999999999999999997654321 1 11
Q ss_pred cccccCCCC---CCeeeeccccccCC-CCcceEEE--E----eCchh---HHhhhcCCccccCCccccccccccCCCccc
Q 010125 300 RHFIDGVEG---ADSFSLNAHKWFFA-TLDCCCLW--V----KDPRA---LVSSLSTNPEYLKNKATESMQVVDYKDWQI 366 (517)
Q Consensus 300 ~~~~~g~~~---aDsi~~~~hK~l~~-p~~~g~l~--~----~~~~~---~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~ 366 (517)
... ..... -+.++.++||.++. ...+|+++ . +++.. +...+.. .... ..
T Consensus 234 ~~~-~~~~~~~~~~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~--------------~~ 295 (412)
T 1yaa_A 234 RLG-VEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAK---IIRS--------------EV 295 (412)
T ss_dssp HHH-HHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHH---HHHT--------------TT
T ss_pred HHH-HhcCCCCcceEEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHH---HHhh--------------cc
Confidence 111 11111 24667789999975 34578887 4 23331 2112111 0000 00
Q ss_pred cCCCCCCchHHHHHHHHh--c------HHHHHHHHHHHHHHHHHHHHHHhcCC---CeEEecCCCeeEEEEEecCCCcch
Q 010125 367 TLSRRFRSLKLWFVIRNY--G------VANLRHFLRSHVNMAKLFERLVSGDK---RFEIVFPCHFAVVCFRVSPSPVLM 435 (517)
Q Consensus 367 ~~sr~~~al~~~~~l~~~--g------~~g~~~~i~~~~~~a~~l~~~l~~~~---~~~l~~~~~~~~v~f~~~~~~~~~ 435 (517)
.+ ...+..+++...+ + .+.++++.++..++++++.+.|++.+ ++++. .+..++++|. ...
T Consensus 296 ~~---~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~--~~~--- 366 (412)
T 1yaa_A 296 SN---PPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHI-VNQCGMFSFT--GLT--- 366 (412)
T ss_dssp SS---CCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHH-HHCCSSEEEC--CCC---
T ss_pred CC---CChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeee-ccCceEEEee--CCC---
Confidence 00 1223333333333 1 24677888888899999999998764 36554 3444555442 110
Q ss_pred hhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 010125 436 DKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHLEA 510 (517)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~ 510 (517)
...+...+.+.|+. +.+ ++|+++.. .+++++++++++|+++.+.
T Consensus 367 ---------------------~~~~~~~l~~~gi~-v~~-------~~Ris~~~--~~~~~i~~~~~~l~~~~~~ 410 (412)
T 1yaa_A 367 ---------------------PQMVKRLEETHAVY-LVA-------SGRASIAG--LNQGNVEYVAKAIDEVVRF 410 (412)
T ss_dssp ---------------------HHHHHHHHHHHCEE-CCT-------TSEEEGGG--CCTTTHHHHHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHhCCEE-ecc-------CcEEEEcc--CCHhHHHHHHHHHHHHHHh
Confidence 12343334456754 333 57999853 3677999999999888653
No 173
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.83 E-value=2e-19 Score=185.78 Aligned_cols=231 Identities=10% Similarity=0.067 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHH--
Q 010125 134 LENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQI-- 211 (517)
Q Consensus 134 lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~-- 211 (517)
...++.+++++++|.+ ..++++||++|+..++.+... +++.|+++..+|.+....+..
T Consensus 82 ~~~~l~~~la~~~g~~---------~~~~~~sG~~Ai~~al~~l~~-----------~Gd~Vi~~~~~y~~~~~~~~~~~ 141 (414)
T 3ndn_A 82 TVSVFEERLRLIEGAP---------AAFATASGMAAVFTSLGALLG-----------AGDRLVAARSLFGSCFVVCSEIL 141 (414)
T ss_dssp HHHHHHHHHHHHHTCS---------EEEEESSHHHHHHHHHHTTCC-----------TTCEEEEESCCCHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHCCC---------cEEEECCHHHHHHHHHHHHhC-----------CCCEEEEcCCccchHHHHHHHHH
Confidence 3345556777887754 468999999998877765522 556788888999887776644
Q ss_pred --cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEccccc
Q 010125 212 --VGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAY 289 (517)
Q Consensus 212 --~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~ 289 (517)
.|+ +++.||.+ |+++|+++|+++++ +|+++.++|++|.+.|+++|+++|++||+++++|++|
T Consensus 142 ~~~g~---~~~~v~~~-------d~~~l~~ai~~~t~------~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~ 205 (414)
T 3ndn_A 142 PRWGV---QTVFVDGD-------DLSQWERALSVPTQ------AVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVF 205 (414)
T ss_dssp HHTTC---EEEEECTT-------CHHHHHHHTSSCCS------EEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTT
T ss_pred HHcCc---EEEEeCCC-------CHHHHHHhcCCCCe------EEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCC
Confidence 888 89998863 89999999876543 7888999999999999999999999999999999999
Q ss_pred ccccccCccccccccCCCCCCeeeeccccccCCCC--cceEEEEeCchhHHhhhcCCccccCCccccccccccCCCcccc
Q 010125 290 AGSACICPEFRHFIDGVEGADSFSLNAHKWFFATL--DCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQIT 367 (517)
Q Consensus 290 g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~--~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~ 367 (517)
+.+....+. . .++|.++.++||+++.+. .+|+++.++.. +...+......+
T Consensus 206 ~~~~~~~~~--~-----~g~div~~S~sK~l~~~G~~~~G~vv~~~~~-~~~~l~~~~~~~------------------- 258 (414)
T 3ndn_A 206 ATPLLQQGF--P-----LGVDVVVYSGTKHIDGQGRVLGGAILGDREY-IDGPVQKLMRHT------------------- 258 (414)
T ss_dssp THHHHCCCG--G-----GTCSEEEEETTTTTTCSSCCCCEEEEECHHH-HTTHHHHHHHHH-------------------
T ss_pred cccccCCch--h-----cCCCeEeccCCccccCCCCceEEEEEECHHH-HHHHHHHHHHHc-------------------
Confidence 865433221 1 168999999999997643 27777775442 211111000000
Q ss_pred CCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCC-----------------eeEEEEEecC
Q 010125 368 LSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCH-----------------FAVVCFRVSP 430 (517)
Q Consensus 368 ~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~-----------------~~~v~f~~~~ 430 (517)
+.....+..|.+++ +.+.+..++++..++++++.+.|++.|++..+..|. .++++|.+.+
T Consensus 259 -g~~~~~~~a~~~~~--~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~ 335 (414)
T 3ndn_A 259 -GPAMSAFNAWVLLK--GLETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDC 335 (414)
T ss_dssp -CCCCCHHHHHHHHH--HGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECS
T ss_pred -CCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcC
Confidence 11224456666665 456778889999999999999999999886543332 4578888754
No 174
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=99.83 E-value=2.6e-19 Score=182.17 Aligned_cols=287 Identities=10% Similarity=0.062 Sum_probs=177.4
Q ss_pred HHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCC-eEEEeCCCC-chHHHHHHHHcC
Q 010125 136 NIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISK-LIVYGSDQT-HCALQKAAQIVG 213 (517)
Q Consensus 136 ~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~-~~v~~s~~~-H~s~~kaa~~~G 213 (517)
.++.+++++++|.+ + .+++|+|||+|+..++.+++... .. +. ++ ..|++.+.+ |.+...+....|
T Consensus 73 ~~l~~~la~~~g~~-~-------~v~~~~g~t~a~~~~~~~~~~~~-~~-~~---~g~~~vl~~~~~y~~~~~~~~~~~~ 139 (375)
T 2eh6_A 73 EELAHKLVKHFWTE-G-------KVFFANSGTESVEAAIKLARKYW-RD-KG---KNKWKFISFENSFHGRTYGSLSATG 139 (375)
T ss_dssp HHHHHHHHHTSSSC-E-------EEEEESSHHHHHHHHHHHHHHHH-HH-TT---CCCCEEEEEBTCCCCSSHHHHHHCB
T ss_pred HHHHHHHHhhcCCC-C-------eEEEeCchHHHHHHHHHHHHHHh-cc-CC---CCCCEEEEECCCcCCCchhhhhhcC
Confidence 34567788888884 3 68999999999998887654321 00 11 23 556666666 444444444333
Q ss_pred C-----CCC----CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccC----hhHHHHHHHHhC
Q 010125 214 I-----DVK----NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDP----LKPLCDVAKQFG 280 (517)
Q Consensus 214 ~-----g~~----~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idp----l~eI~~i~~~~g 280 (517)
. |.. .+..+|. +|+++|+++++++ +.+|+++.+++++|.+.| +++|+++|++||
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~~------~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~ 206 (375)
T 2eh6_A 140 QPKFHKGFEPLVPGFSYAKL-------NDIDSVYKLLDEE------TAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKD 206 (375)
T ss_dssp CGGGTTTTCSCCSSEEEECT-------TCHHHHHTTCCTT------EEEEEECSEETTTTSEECCHHHHHHHHHHHHHHT
T ss_pred CccccCCCCCCCCCceeCCC-------chHHHHHHHhcCC------eEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhC
Confidence 2 000 1333332 5899999888643 347888889999999977 999999999999
Q ss_pred CeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCccccCCcccccccccc
Q 010125 281 IWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVD 360 (517)
Q Consensus 281 i~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~ 360 (517)
+++|+|++|+++............+. ..|+++++ |+++.+.++|+++++++ +.+.+... ...
T Consensus 207 ~~li~De~~~~~~~~~~~~~~~~~~~-~~d~~s~S--K~~~~g~~~G~~~~~~~--~~~~~~~~--~~~----------- 268 (375)
T 2eh6_A 207 VLLIIDEVQTGIGRTGEFYAYQHFNL-KPDVIALA--KGLGGGVPIGAILAREE--VAQSFTPG--SHG----------- 268 (375)
T ss_dssp CEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEEEC--GGGGTTSCCEEEEEEHH--HHTTCCTT--SCC-----------
T ss_pred CEEEEeccccCCCCCCcchhhhhcCC-CCCEEEEc--ccccCCCCeEEEEEcHH--HHhhhcCC--CCC-----------
Confidence 99999999986432111110001111 37888766 99988899999998753 22222110 000
Q ss_pred CCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCeeEEEEEecCCCcchhhhhh
Q 010125 361 YKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKT 440 (517)
Q Consensus 361 ~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~~~~v~f~~~~~~~~~~~~~~ 440 (517)
. +. ....+...++...+.. +.+..++..++++++.+.|++++... + ++..+++.+.+...
T Consensus 269 -~--~~----~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~l~~~L~~~~~~~-~-~~~g~~~~~~~~~~--------- 328 (375)
T 2eh6_A 269 -S--TF----GGNPLACRAGTVVVDE--VEKLLPHVREVGNYFKEKLKELGKGK-V-KGRGLMLGLELERE--------- 328 (375)
T ss_dssp -C--SS----TTCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTSSE-E-EEETTEEEEECSSC---------
T ss_pred -C--CC----CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCC-c-eEEEEEEEEEEcCc---------
Confidence 0 00 1123333333332211 12677888889999999998875422 2 23445666665422
Q ss_pred hhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 010125 441 KYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQH 507 (517)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~ 507 (517)
..++.+.|.++|+..... +..++|+++ +..++++++++++++|+++
T Consensus 329 ----------------~~~~~~~l~~~gi~~~~~----~~~~iRi~~-~~~~~~~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 329 ----------------CKDYVLKALEKGLLINCT----AGKVLRFLP-PLIIQKEHIDRAISVLREI 374 (375)
T ss_dssp ----------------CHHHHHHHHHTTEECEEE----TTTEEEECC-CTTCCHHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHCCCEEecC----CCCEEEEEC-CCCCCHHHHHHHHHHHHHh
Confidence 134566666778644322 346899997 4567888999999998764
No 175
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.82 E-value=2.1e-19 Score=185.53 Aligned_cols=288 Identities=11% Similarity=0.061 Sum_probs=189.2
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHH
Q 010125 127 SSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQ 206 (517)
Q Consensus 127 ~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~ 206 (517)
..|...++|+ .+++++|.+ ..++++||++|+..++.+... +++.|+++...|.+..
T Consensus 80 ~~p~~~~le~----~lA~l~g~~---------~~i~~ssGt~Ai~~al~~l~~-----------~Gd~Vi~~~~~y~~~~ 135 (415)
T 2fq6_A 80 GTLTHFSLQQ----AMCELEGGA---------GCVLFPCGAAAVANSILAFIE-----------QGDHVLMTNTAYEPSQ 135 (415)
T ss_dssp CCHHHHHHHH----HHHHHHTCS---------EEEEESSHHHHHHHHHHTTCC-----------TTCEEEEETTSCHHHH
T ss_pred CCchHHHHHH----HHHHHhCCC---------eEEEeCCHHHHHHHHHHHHhC-----------CCCEEEEeCCCchHHH
Confidence 4555666665 456666754 357778999999887765321 5567888889998877
Q ss_pred HHH----HHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHH--hC
Q 010125 207 KAA----QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQ--FG 280 (517)
Q Consensus 207 kaa----~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~--~g 280 (517)
..+ +..|+ +++.++.+ |+++|+++|++++ .+|++..++|++|.+.|+++|+++|++ ||
T Consensus 136 ~~~~~~l~~~G~---~v~~v~~~-------d~~~le~ai~~~t------klV~~e~~~NptG~v~dl~~I~~la~~~~~g 199 (415)
T 2fq6_A 136 DFCSKILSKLGV---TTSWFDPL-------IGADIVKHLQPNT------KIVFLESPGSITMEVHDVPAIVAAVRSVVPD 199 (415)
T ss_dssp HHHHHTGGGGTC---EEEEECTT-------CGGGGGGGCCTTE------EEEEEESSCTTTCCCCCHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHcCc---EEEEECCC-------CHHHHHHhhccCC------cEEEEECCCCCCCEeecHHHHHHHHHhhcCC
Confidence 654 34577 88888653 7889998887654 378889999999999999999999999 99
Q ss_pred CeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCc--ceEEEEeCchhHHhhhcCCccccCCcccccccc
Q 010125 281 IWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCCLWVKDPRALVSSLSTNPEYLKNKATESMQV 358 (517)
Q Consensus 281 i~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~--~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~ 358 (517)
+++|||++|+.+....+ .. .++|.++.++||+++.+.+ .|+++.++. ... .+.. +..
T Consensus 200 ~~livD~a~a~~~~~~p-~~------~g~Div~~S~sK~lg~~g~~~~G~l~~~~~-~~~-~l~~---~~~--------- 258 (415)
T 2fq6_A 200 AIIMIDNTWAAGVLFKA-LD------FGIDVSIQAATKYLVGHSDAMIGTAVCNAR-CWE-QLRE---NAY--------- 258 (415)
T ss_dssp CEEEEECTTTTTTSSCG-GG------GTCSEEEEETTTTTTCSSSCCCEEEEECTT-THH-HHHH---HHH---------
T ss_pred CEEEEECCCcccccCCc-cc------cCCeEEEEeCccccCCCCCceEEEEEeCHH-HHH-HHHH---HHH---------
Confidence 99999999986543221 11 1689999999999987754 677777653 222 1110 000
Q ss_pred ccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-----------------Ce
Q 010125 359 VDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPC-----------------HF 421 (517)
Q Consensus 359 ~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~-----------------~~ 421 (517)
. .+-.......|..++ +.+.+..++++..++++++++.|++.|.++-+..| ..
T Consensus 259 ------~--~G~~~~~~~a~~~~~--~l~~l~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g 328 (415)
T 2fq6_A 259 ------L--MGQMVDADTAYITSR--GLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSS 328 (415)
T ss_dssp ------H--TTCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCC
T ss_pred ------h--cCCCCCHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCc
Confidence 0 011113344555544 34667788888999999999999988776533111 35
Q ss_pred eEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHh------cCcE---EEe--e---ee-----ECC--E
Q 010125 422 AVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINA------SGKA---YMT--H---AV-----LGG--I 480 (517)
Q Consensus 422 ~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~------~g~~---~~~--~---~~-----~~g--~ 480 (517)
++++|.+.... . .....++.+.+.. .|.+ ... + +. ..| .
T Consensus 329 ~i~sf~l~g~~----------------~----~~~~~~~l~~l~~~~~a~s~G~~~s~~~~~~p~~~s~~~~~~~~g~~~ 388 (415)
T 2fq6_A 329 GLFSFVLKKKL----------------N----NEELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSG 388 (415)
T ss_dssp SEEEEEESSCC----------------C----HHHHHHHHTTCSSCEECSCCCSSSCEEEEECHHHHHTTCTTCCCCCCS
T ss_pred eEEEEEECCCC----------------C----HHHHHHHHHhCCcCeEeccCCCCceeEEecCCCccccccchhhcCCCC
Confidence 68899886410 0 0123444544421 1211 111 1 00 012 3
Q ss_pred eEEEEEecCCCCcHHHHHHHHHHHHH
Q 010125 481 YAIRFATGATLTEKRHVVVAWTVVQQ 506 (517)
Q Consensus 481 ~~lR~~~~~~~t~~~di~~l~~~l~~ 506 (517)
..+|+|++ ..+++++|+.+.++|++
T Consensus 389 ~~iRlS~G-~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 389 TLIRLHIG-LEDVDDLIADLDAGFAR 413 (415)
T ss_dssp CEEEEECC-SSCHHHHHHHHHHHHHT
T ss_pred CEEEEEec-CCCHHHHHHHHHHHHHh
Confidence 68999995 67788889888888764
No 176
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.82 E-value=6.4e-19 Score=183.49 Aligned_cols=325 Identities=10% Similarity=0.073 Sum_probs=188.6
Q ss_pred cccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchH
Q 010125 125 WISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCA 204 (517)
Q Consensus 125 ~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s 204 (517)
|..++...++|+. +++++|.+ ..+++++||+|+..++.+++...+.+... .++..|+++..+|.+
T Consensus 58 ~~~~~~~~~l~~~----la~~~g~~---------~~i~~~sGt~a~~~al~~l~~~~~~~~~~--~~gd~Vi~~~~~~~~ 122 (437)
T 3bb8_A 58 LTTGRFNDAFEKK----LGEYLGVP---------YVLTTTSGSSANLLALTALTSPKLGVRAL--KPGDEVITVAAGFPT 122 (437)
T ss_dssp CBSCHHHHHHHHH----HHHHHTCS---------EEEEESCHHHHHHHHHHHTTCGGGGGGSC--CTTCEEEECSSSCHH
T ss_pred cCCChHHHHHHHH----HHHHHCCC---------cEEEeCCHHHHHHHHHHHhhhcccccccC--CCcCEEEECCCCcHH
Confidence 3345555666655 55556654 36889999999988887652100000001 155678999999999
Q ss_pred HHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEE
Q 010125 205 LQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVH 284 (517)
Q Consensus 205 ~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lh 284 (517)
+..++...|+ +++.+|++++ ++.+|+++|+++|++++ .+|+++. .+|...|+++|+++|++||+++|
T Consensus 123 ~~~~~~~~g~---~~~~v~~~~~-~~~~d~~~l~~~i~~~~------~~v~~~~---~~g~~~~~~~i~~l~~~~~~~li 189 (437)
T 3bb8_A 123 TVNPTIQNGL---IPVFVDVDIP-TYNVNASLIEAAVSDKT------KAIMIAH---TLGNLFDLAEVRRVADKYNLWLI 189 (437)
T ss_dssp HHHHHHHTTC---EEEECCEETT-TTEECGGGHHHHCCTTE------EEEEEEC---GGGCCCCHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHcCC---EEEEEeccCc-cCCcCHHHHHHhcCCCC------eEEEEeC---CCCChhcHHHHHHHHHHcCCEEE
Confidence 9999999999 9999998752 57999999999987543 3566653 46778999999999999999999
Q ss_pred cccccccccccCccccccccCCCCCCeeeeccccccCCCCc-ceEEEEeCchhHHhhhcCCccccCC---c-ccc-----
Q 010125 285 VDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLD-CCCLWVKDPRALVSSLSTNPEYLKN---K-ATE----- 354 (517)
Q Consensus 285 vDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~-~g~l~~~~~~~~~~~~~~~~~yl~~---~-~~~----- 354 (517)
+|+||+.+... ..+.. + ...|.++++++|....|.+ .|+++.++. .+...+.....+-.. . ..+
T Consensus 190 ~D~a~~~g~~~--~~~~~--~-~~~d~~~~s~~~~k~l~~g~gg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (437)
T 3bb8_A 190 EDCCDALGSTY--DGKMA--G-TFGDIGTVSFYPAKHITMGEGGAVFTQSA-ELKSIIESFRDWGRDCYCAPGCDNTCKK 263 (437)
T ss_dssp EECTTCTTCEE--TTEET--T-SSSSEEEEECSTTSSSCCSSCEEEEESCH-HHHHHHHHHHBTTBCC------------
T ss_pred EECccccCceE--CCeec--c-cccCEEEEECcCCcCCCCCCeEEEEeCCH-HHHHHHHHHHHhCccccccccccccccc
Confidence 99999855433 11111 1 1367766664333322333 455554433 322221100001000 0 000
Q ss_pred -----ccccc-cC-CCcc---ccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-----
Q 010125 355 -----SMQVV-DY-KDWQ---ITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPC----- 419 (517)
Q Consensus 355 -----~~~~~-~~-~~~~---~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~----- 419 (517)
..... .+ ..++ ....-+...+...+++.. .+.+.+.+++..++++++.+.|++++++.++...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~--l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~ 341 (437)
T 3bb8_A 264 RFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACGLAQ--LERIEEFVEKRKANFKYLKDALQSCADFIELPEATENSD 341 (437)
T ss_dssp ----CCSCCCTTCCGGGCBCSCCCBCCCBHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHGGGGTTTEECCCCCTTEE
T ss_pred ccccccccccccccccccccccCcccCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhccCCccccCCCCCCCc
Confidence 00000 00 0000 011111223333333333 3445677788889999999999998887665321
Q ss_pred -CeeEEEEEecCC-CcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeee--------EC--C--------
Q 010125 420 -HFAVVCFRVSPS-PVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAV--------LG--G-------- 479 (517)
Q Consensus 420 -~~~~v~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~--------~~--g-------- 479 (517)
...++.+.+... + .....+.+.|.++|+..-.... +. +
T Consensus 342 ~~~~~~~~~~~~~~~----------------------~~~~~l~~~L~~~GI~v~~~~~~~~~~~p~~~~~~~~~~~~~~ 399 (437)
T 3bb8_A 342 PSWFGFPITLKEDSG----------------------VSRIDLVKFLDEAKVGTRLLFAGNLTRQPYFHDVKYRVVGELT 399 (437)
T ss_dssp CCCSSEEEEECGGGS----------------------SCHHHHHHHHHHTTBCCBCCTTSSGGGSGGGSSCCCEECSCCH
T ss_pred eeeEEEEEEECCcCc----------------------CcHHHHHHHHHHCCCceeccCCcccccCchhhccCccccCCCc
Confidence 111233333211 0 0124567777777864321110 00 0
Q ss_pred ------EeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 010125 480 ------IYAIRFATGATLTEKRHVVVAWTVVQQHL 508 (517)
Q Consensus 480 ------~~~lR~~~~~~~t~~~di~~l~~~l~~~~ 508 (517)
...+|+++ ++.++++||+++++.|+++.
T Consensus 400 ~~~~~~~~~lrl~~-~~~~t~~di~~i~~~l~~~~ 433 (437)
T 3bb8_A 400 NTDRIMNQTFWIGI-YPGLTHDHLDYVVSKFEEFF 433 (437)
T ss_dssp HHHHHHHHEEEECC-STTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCEEEecC-CCCCCHHHHHHHHHHHHHHH
Confidence 12599997 67889999999999998764
No 177
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=99.82 E-value=5.3e-19 Score=181.57 Aligned_cols=296 Identities=13% Similarity=0.042 Sum_probs=185.6
Q ss_pred HHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHH
Q 010125 132 TELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQI 211 (517)
Q Consensus 132 ~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~ 211 (517)
.....++.+++++++|.+ ..++++|||+|+..++.+++..... +..+ ++.+|+.+...|.+...+++.
T Consensus 81 ~~~~~~l~~~la~~~g~~---------~v~~~~gg~~a~~~al~~~~~~~~~--~~~~-~~~vi~~~~~yh~~~~~~~~~ 148 (397)
T 2ord_A 81 NRPQMELAELLSKNTFGG---------KVFFANTGTEANEAAIKIARKYGKK--KSEK-KYRILSAHNSFHGRTLGSLTA 148 (397)
T ss_dssp EHHHHHHHHHHHHTTTSC---------EEEEESSHHHHHHHHHHHHHHHHHH--HCTT-CCEEEEEBTCCCCSSHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCC---------eEEEeCCHHHHHHHHHHHHHHHhhc--CCCC-CceEEEEcCCcCCCchhhhhc
Confidence 345556677788887732 5799999999999988877642111 0000 234555555566777777777
Q ss_pred cCCCCCC------------EEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcccc----ccChhHHHHH
Q 010125 212 VGIDVKN------------FRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITA----VDPLKPLCDV 275 (517)
Q Consensus 212 ~G~g~~~------------v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~----idpl~eI~~i 275 (517)
.|. + ++.+|. .|+++|+++++++ +.+|+++.+++++|. .+++++|+++
T Consensus 149 ~g~---~~~~~~~~p~~~~~~~~~~-------~d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~~~~~l~~l~~l 212 (397)
T 2ord_A 149 TGQ---PKYQKPFEPLVPGFEYFEF-------NNVEDLRRKMSED------VCAVFLEPIQGESGIVPATKEFLEEARKL 212 (397)
T ss_dssp SBC---HHHHGGGCSCCTTEEEECT-------TCHHHHHHHCCTT------EEEEEECSEECTTTCEECCHHHHHHHHHH
T ss_pred cCC---hhhccccCCCCCCeeEecC-------CCHHHHHHHhhcC------eEEEEEecccCCCCcccCCHHHHHHHHHH
Confidence 776 4 667764 2899999998753 347888889999998 3789999999
Q ss_pred HHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCccccCCccccc
Q 010125 276 AKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATES 355 (517)
Q Consensus 276 ~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~ 355 (517)
|++||+++++|++|+++...........-+. ..|.+++ +|+++.++++|+++++++. . .+.. . ...
T Consensus 213 ~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~d~~s~--sK~~~~G~r~G~~~~~~~~--~-~l~~--~--~~~---- 278 (397)
T 2ord_A 213 CDEYDALLVFDEVQCGMGRTGKLFAYQKYGV-VPDVLTT--AKGLGGGVPIGAVIVNERA--N-VLEP--G--DHG---- 278 (397)
T ss_dssp HHHHTCEEEEECTTTTTTTTSSSSHHHHHTC-CCSEEEE--CGGGGTTSCCEEEEECSTT--C-CCCT--T--SSC----
T ss_pred HHHcCCEEEEEecccCCccCccchhhhhhCC-CCCeeee--ccccCCCcCeEEEEEchHh--c-ccCC--C--CcC----
Confidence 9999999999999975432111110000122 3676654 8999977889999887542 1 1210 0 000
Q ss_pred cccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC----CCeEEecCCCeeEEEEEecCC
Q 010125 356 MQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGD----KRFEIVFPCHFAVVCFRVSPS 431 (517)
Q Consensus 356 ~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~----~~~~l~~~~~~~~v~f~~~~~ 431 (517)
. +. .........+..+++.+.. +++.++..++++++.+.|++. +.+... ++..++++|.+...
T Consensus 279 ------~--~~-~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~~~~~~~ 345 (397)
T 2ord_A 279 ------T--TF-GGNPLACRAGVTVIKELTK---EGFLEEVEEKGNYLMKKLQEMKEEYDVVADV-RGMGLMIGIQFREE 345 (397)
T ss_dssp ------C--SS-TTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEECTT
T ss_pred ------C--CC-CCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHhCCceEEE-EEEeEEEEEEECCh
Confidence 0 00 0001112233344444332 356677778888888888654 332222 23446677766432
Q ss_pred CcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 010125 432 PVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHLEA 510 (517)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~ 510 (517)
. ...++.+.|.++|+..... +..++|+++ +..++++++++++++|+++.++
T Consensus 346 ~-----------------------~~~~l~~~l~~~gi~v~~~----~~~~iRis~-~~~~~~e~i~~~~~~l~~~l~~ 396 (397)
T 2ord_A 346 V-----------------------SNREVATKCFENKLLVVPA----GNNTIRFLP-PLTVEYGEIDLAVETLKKVLQG 396 (397)
T ss_dssp S-----------------------CHHHHHHHHHHTTEECEEE----TTTEEEECC-CTTCCHHHHHHHHHHHHHHHHT
T ss_pred H-----------------------HHHHHHHHHHHCCCEEccC----CCCEEEEEC-CcCCCHHHHHHHHHHHHHHHhh
Confidence 0 1245667777778654332 346899997 4567889999999999887653
No 178
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.82 E-value=5e-18 Score=175.79 Aligned_cols=339 Identities=10% Similarity=0.036 Sum_probs=192.8
Q ss_pred HHHHHHHhccccccc---ccccChhhHHHHHHHHHHHHHHc-CCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHH
Q 010125 109 FLGEMLSSGFNIVGF---NWISSPAATELENIVMDWLGQML-KLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNK 184 (517)
Q Consensus 109 ~~~~~l~~~~n~~~~---~~~~sp~~~~lE~~v~~~l~~l~-g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~ 184 (517)
.+.+.+...+..... .|...+...+ +++.+++++ | +.. ..+++|+||++|+..++..++... +
T Consensus 61 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~----l~~~la~~~~~-~~~------~~v~~~~g~~~a~~~~~~~a~~~~-~- 127 (426)
T 1sff_A 61 KVVAAVEAQLKKLSHTCFQVLAYEPYLE----LCEIMNQKVPG-DFA------KKTLLVTTGSEAVENAVKIARAAT-K- 127 (426)
T ss_dssp HHHHHHHHHTTTCSCCCTTTEECHHHHH----HHHHHHHHSSC-SSC------EEEEEESSHHHHHHHHHHHHHHHH-T-
T ss_pred HHHHHHHHHHHhCCCccccccCCHHHHH----HHHHHHHhCCc-ccc------cEEEEeCchHHHHHHHHHHHHHhh-C-
Confidence 345555555533211 2333344444 455566666 4 221 168999999999999888654321 1
Q ss_pred hcccCCCCeEEEeCCCCchHHHHHHHHcCCC----------CCCEEEEecCC---CCCcccCHHHHHHHHHHhHhcCCcc
Q 010125 185 IGRENISKLIVYGSDQTHCALQKAAQIVGID----------VKNFRAIKTTK---SSSYGLSPDSLMAQINSDVEVGLIP 251 (517)
Q Consensus 185 ~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g----------~~~v~~vp~d~---~~~~~~d~~~Le~~i~~~~~~g~~p 251 (517)
++.+|+.+...|.+...++...|.. ...++.+|++. ..++.+|+++|++++++.. .+..+
T Consensus 128 ------~~~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~ 200 (426)
T 1sff_A 128 ------RSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDA-APEDI 200 (426)
T ss_dssp ------CCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTC-CGGGE
T ss_pred ------CCeEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhcc-CCCce
Confidence 3445555555666666677776651 01277788753 1134689999999997420 00123
Q ss_pred eEEEeeccCCccccccC----hhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcce
Q 010125 252 LFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCC 327 (517)
Q Consensus 252 ~~vv~t~gtt~~G~idp----l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g 327 (517)
.+|+++...+++|.+.+ +++|.++|++||+++++|++|+++............++ ..|.+ +++|+++.++.+|
T Consensus 201 ~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~di~--s~sK~~~~GlriG 277 (426)
T 1sff_A 201 AAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGV-APDLT--TFAKSIAGGFPLA 277 (426)
T ss_dssp EEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTS-CCSEE--EECGGGGTSSCCE
T ss_pred EEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhhhhhcCC-CCCEE--EEcccccCCCceE
Confidence 45666443334997777 99999999999999999999986432111110001111 35655 5679998656689
Q ss_pred EEEEeCchhHHhhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Q 010125 328 CLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLV 407 (517)
Q Consensus 328 ~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l 407 (517)
++++++. +.+.+... ... . +. .........+.++++.+..+ ++.++..++++++.+.|
T Consensus 278 ~~~~~~~--~~~~l~~~--~~~------------~--~~-~~~~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~l 335 (426)
T 1sff_A 278 GVTGRAE--VMDAVAPG--GLG------------G--TY-AGNPIACVAALEVLKVFEQE---NLLQKANDLGQKLKDGL 335 (426)
T ss_dssp EEEEEHH--HHTTSCTT--SBC------------C--SS-SSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHH
T ss_pred EEEEcHH--HHhhhccC--CcC------------c--CC-CCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHH
Confidence 9998653 22222110 000 0 00 00111222334444544332 34566677777777777
Q ss_pred hc----CCCeEEecCCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEE
Q 010125 408 SG----DKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAI 483 (517)
Q Consensus 408 ~~----~~~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~l 483 (517)
++ .+.+..+ ++..+++.+.+.+... .... . .....++.+.|.++|+.+.++.. ...++
T Consensus 336 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~----------~~~~-~----~~~~~~l~~~l~~~gi~v~~~~~--~~~~i 397 (426)
T 1sff_A 336 LAIAEKHPEIGDV-RGLGAMIAIELFEDGD----------HNKP-D----AKLTAEIVARARDKGLILLSCGP--YYNVL 397 (426)
T ss_dssp HHHHHTCTTEEEE-EEETTEEEEEEBGGGC----------TTSB-C----HHHHHHHHHHHHHTTEECEEEST--TSCEE
T ss_pred HHHHHhCCCeEEE-EEEEEEEEEEEecCcc----------ccCC-C----hHHHHHHHHHHHHCCcEEecCCC--CCCEE
Confidence 65 4444332 2345677777742100 0000 0 12245677778788865443322 24689
Q ss_pred EEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 010125 484 RFATGATLTEKRHVVVAWTVVQQHLEAF 511 (517)
Q Consensus 484 R~~~~~~~t~~~di~~l~~~l~~~~~~l 511 (517)
|+++ +..++++++++++++|+++.+++
T Consensus 398 Ri~~-~~~~~~~~i~~~~~~l~~~l~~~ 424 (426)
T 1sff_A 398 RILV-PLTIEDAQIRQGLEIISQCFDEA 424 (426)
T ss_dssp EECC-CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEC-CccCCHHHHHHHHHHHHHHHHHH
Confidence 9998 45678889999999999987765
No 179
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.82 E-value=3.6e-19 Score=182.42 Aligned_cols=321 Identities=12% Similarity=0.037 Sum_probs=200.6
Q ss_pred HHHHHHHHhcccc-cccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEE--cCCchHHHHHHHHHHHHHHHHH
Q 010125 108 GFLGEMLSSGFNI-VGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVI--QGTTCEAILCTLTAARDRVLNK 184 (517)
Q Consensus 108 ~~~~~~l~~~~n~-~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~--t~ggt~a~~~al~~ar~~~~~~ 184 (517)
..+.+.+...+.. ....|....+..++++.+.+|+... +.+++ ..++ |+|||+|+..++.+++...
T Consensus 47 ~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~-~~~~~-------~v~~~~~~g~~~a~~~~~~~~~~~~--- 115 (394)
T 2ay1_A 47 RAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGD-GLKSE-------TTATLATVGGTGALRQALELARMAN--- 115 (394)
T ss_dssp HHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGG-GCCGG-------GEEEEEEEHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHHHHHhCC-CCCcc-------cEEEEecCCchhHHHHHHHHHHhcC---
Confidence 4455555544322 3345655566788988888887432 22333 5777 9999999988887665420
Q ss_pred hcccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccc
Q 010125 185 IGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAIT 264 (517)
Q Consensus 185 ~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G 264 (517)
+++.|++..++|.++..+++..|. +++.+|.+..+++.+|+++|++++++.. ....+++.+.++|+||
T Consensus 116 ------~gd~vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~~---~~~~~~~~~~~~nptG 183 (394)
T 2ay1_A 116 ------PDLRVFVSDPTWPNHVSIMNFMGL---PVQTYRYFDAETRGVDFEGMKADLAAAK---KGDMVLLHGCCHNPTG 183 (394)
T ss_dssp ------TTCCEEEEESCCHHHHHHHHHHTC---CEEEEECEETTTTEECHHHHHHHHHTCC---TTCEEEEESSSCTTTC
T ss_pred ------CCCEEEEcCCCChhHHHHHHHcCC---ceEEEecccccCCccCHHHHHHHHHhCC---CCCEEEEeCCCCCCCC
Confidence 344577788999999999999999 9999998532357899999999997531 1234677789999999
Q ss_pred cccC---hhHHHHHHHHhCCeEEcccccccccccC--c--cccccccCCCCCC-eeeeccccccC-CCCcceEEEE--eC
Q 010125 265 AVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIC--P--EFRHFIDGVEGAD-SFSLNAHKWFF-ATLDCCCLWV--KD 333 (517)
Q Consensus 265 ~idp---l~eI~~i~~~~gi~lhvDaA~g~~~~~~--~--~~~~~~~g~~~aD-si~~~~hK~l~-~p~~~g~l~~--~~ 333 (517)
.+-| +++|+++|++||+++++|++|+++.... + .... +... ..+ .+..++||+++ ....+|++++ ++
T Consensus 184 ~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~-~~~~-~~~~i~~~s~sK~~~~~G~riG~~~~~~~~ 261 (394)
T 2ay1_A 184 ANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRL-IASR-IPEVLIAASCSKNFGIYRERTGCLLALCAD 261 (394)
T ss_dssp CCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHH-HHHH-CSSEEEEEECTTTTTCGGGCEEEEEEECSS
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHH-Hhhc-CCCEEEEEeccCCCcCcCCccceEEEEeCC
Confidence 9865 6688999999999999999998765321 0 0111 1111 223 55678999997 4456799987 34
Q ss_pred chhHHhhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhc--------HHHHHHHHHHHHHHHHHHHH
Q 010125 334 PRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYG--------VANLRHFLRSHVNMAKLFER 405 (517)
Q Consensus 334 ~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g--------~~g~~~~i~~~~~~a~~l~~ 405 (517)
++....... .+..... .+..+ ...+..+++...+. .+.++++.++..++++++.+
T Consensus 262 ~~~~~~l~~----~~~~~~~----------~~~~~---~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 324 (394)
T 2ay1_A 262 AATRELAQG----AMAFLNR----------QTYSF---PPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAG 324 (394)
T ss_dssp HHHHHHHHH----HHHHHHH----------TTTSS---CCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHh----------hhcCC---CChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432111110 0000000 00001 12233333333331 24677778888889999999
Q ss_pred HHhcCC---CeEEecCCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeE
Q 010125 406 LVSGDK---RFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYA 482 (517)
Q Consensus 406 ~l~~~~---~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~ 482 (517)
.|++.. ++++. .+..+++.|. .-. . ..+.+.+.+.|+.. .+ .
T Consensus 325 ~L~~~~~~~~~~~~-~~~~g~~~~~-~~~----------------------~---~~~~~~l~~~gi~v-~~-------~ 369 (394)
T 2ay1_A 325 ELRDLSGSDRFGFV-AEHRGMFSRL-GAT----------------------P---EQVKRIKEEFGIYM-VG-------D 369 (394)
T ss_dssp HHHHHHTSSTTTHH-HHCCSSEEEC-CCC----------------------H---HHHHHHHHHHCEEC-CT-------T
T ss_pred HHHhcCCCCCeeEE-cCCceEEEee-CCC----------------------H---HHHHHHHHhCCEEe-cC-------C
Confidence 988753 35544 2333333331 111 0 23445555667643 32 2
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHHH
Q 010125 483 IRFATGATLTEKRHVVVAWTVVQQH 507 (517)
Q Consensus 483 lR~~~~~~~t~~~di~~l~~~l~~~ 507 (517)
+|+++. .++++++++++++|+++
T Consensus 370 ~Ris~~--~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 370 SRINIA--GLNDNTIPILARAIIEV 392 (394)
T ss_dssp CEEEGG--GCCTTTHHHHHHHHHHH
T ss_pred CeEEee--cCCHhhHHHHHHHHHHc
Confidence 699985 35777999999999876
No 180
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.82 E-value=1.2e-18 Score=180.57 Aligned_cols=320 Identities=11% Similarity=-0.004 Sum_probs=195.9
Q ss_pred cccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHH-HHHHHHHHHHHH-HhcccCC---CCeEEEe
Q 010125 123 FNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAIL-CTLTAARDRVLN-KIGRENI---SKLIVYG 197 (517)
Q Consensus 123 ~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~-~al~~ar~~~~~-~~g~~~~---~~~~v~~ 197 (517)
..|....+..++++.+++|+ |.+++ ..++|+|++++++ ..+..+... + ..|.... .+..|++
T Consensus 70 ~~Y~~~~G~~~lr~~ia~~~----~~~~~-------~i~~t~G~~~al~l~~~~~~l~~--~~~~g~~~~~~~d~~~Vl~ 136 (422)
T 3d6k_A 70 RNYGGLLGIADIRELWAEAL----GLPAD-------LVVAQDGSSLNIMFDLISWSYTW--GNNDSSRPWSAEEKVKWLC 136 (422)
T ss_dssp TSSCCSSCCHHHHHHHHHHH----TCCGG-------GEEECSSCHHHHHHHHHHHHHHH--CCTTCSSCGGGSSCCEEEE
T ss_pred hCCCCCCCCHHHHHHHHHHh----CCChh-------HEEEecchHHHHHHHHHHHHhcC--cccccccccccCCCCEEEE
Confidence 45666556777877777665 66654 6899999999873 232222211 0 0000000 0236888
Q ss_pred CCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEE-eeccCCccccccChh---HHH
Q 010125 198 SDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLC-ATIGTTAITAVDPLK---PLC 273 (517)
Q Consensus 198 s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv-~t~gtt~~G~idpl~---eI~ 273 (517)
.+++|..+..+++..|. +++.+|++. ++ +|+++|++++++. .+.+|+ .+.++|+||.+-|.+ +|+
T Consensus 137 ~~p~y~~~~~~~~~~g~---~~~~v~~~~--~g-~d~~~l~~~l~~~-----~~~~v~~~~~~~NPtG~~~~~~~l~~l~ 205 (422)
T 3d6k_A 137 PVPGYDRHFTITEHFGF---EMINVPMTD--EG-PDMGVVRELVKDP-----QVKGMWTVPVFGNPTGVTFSEQTCRELA 205 (422)
T ss_dssp EESCCHHHHHHHHHHTC---EEEEEEEET--TE-ECHHHHHHHHTST-----TEEEEEECCSSCTTTCCCCCHHHHHHHH
T ss_pred eCCccHHHHHHHHHcCC---EEEecCCCC--CC-CCHHHHHHHHhcC-----CCeEEEEcCCCCCCCCCCCCHHHHHHHH
Confidence 88999999999999999 999999975 33 9999999999642 123555 678999999998876 778
Q ss_pred HHHH-HhCCeEEcccccccccccCc--cccccc-----cCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCc
Q 010125 274 DVAK-QFGIWVHVDAAYAGSACICP--EFRHFI-----DGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNP 345 (517)
Q Consensus 274 ~i~~-~~gi~lhvDaA~g~~~~~~~--~~~~~~-----~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~ 345 (517)
++|+ +||+++++|++|+...+... ...... .+....+.+..+++|++.....+|+++++. +. .+.+....
T Consensus 206 ~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~GlriG~~~~~~-~l-~~~l~~~~ 283 (422)
T 3d6k_A 206 EMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKITHAGSGVSFFASSK-EN-IEWYASHA 283 (422)
T ss_dssp HCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTTSCTTSSCEEEECCH-HH-HHHHHHHH
T ss_pred HHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhhcCcccceEEEEeCH-HH-HHHHHHHH
Confidence 8888 99999999999974222111 111111 112244577888999955556789988753 22 22221100
Q ss_pred cccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcH-----HHHHHHHHHHHHHHHHHHHHHhc----CCCeEEe
Q 010125 346 EYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGV-----ANLRHFLRSHVNMAKLFERLVSG----DKRFEIV 416 (517)
Q Consensus 346 ~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~-----~g~~~~i~~~~~~a~~l~~~l~~----~~~~~l~ 416 (517)
... + .....+..+++...+.. +.++++.++..++.+++.+.|.+ .+++++.
T Consensus 284 ~~~----------------~----~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~ 343 (422)
T 3d6k_A 284 NVR----------------G----IGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWT 343 (422)
T ss_dssp HHH----------------C----SCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEC
T ss_pred Hhh----------------c----CCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEe
Confidence 000 0 01123444444444433 23444445555566666666543 4446665
Q ss_pred cCCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeee-E-----CCEeEEEEEecCC
Q 010125 417 FPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAV-L-----GGIYAIRFATGAT 490 (517)
Q Consensus 417 ~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-~-----~g~~~lR~~~~~~ 490 (517)
.+....++.+.+... ....+.+.+.+.|+.+.+... + .+..++|+++..
T Consensus 344 ~p~~g~~~~~~~~~~------------------------~~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~- 398 (422)
T 3d6k_A 344 SPTGGYFISVDVVPG------------------------TASRVVELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSL- 398 (422)
T ss_dssp CCSBSSCEEEEESTT------------------------CHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSS-
T ss_pred CCCcceEEEEECCCC------------------------CHHHHHHHHHHCCeEEEcCccccCCCCCCCCCeEEEecCC-
Confidence 443445566666421 023456667777865544122 2 135789999853
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhh
Q 010125 491 LTEKRHVVVAWTVVQQHLEAFQSA 514 (517)
Q Consensus 491 ~t~~~di~~l~~~l~~~~~~l~~~ 514 (517)
++++++++++++|+++.+++..+
T Consensus 399 -~~~e~i~~~~~~l~~~l~~~~~~ 421 (422)
T 3d6k_A 399 -PPVAELEVAMDGFATCVLMAALE 421 (422)
T ss_dssp -SCHHHHHHHHHHHHHHHHHHHHT
T ss_pred -CCHHHHHHHHHHHHHHHHHHHhc
Confidence 68889999999999998877654
No 181
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.82 E-value=9.2e-19 Score=182.94 Aligned_cols=360 Identities=11% Similarity=0.017 Sum_probs=215.8
Q ss_pred CHHHHHHHHHHhhcCCCCCCCCCccceeCCCCCChHHHHHHHHHhcc---cccccccccChhhHHHHHHHHHHHHHHcCC
Q 010125 72 SMETILQDVQQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGF---NIVGFNWISSPAATELENIVMDWLGQMLKL 148 (517)
Q Consensus 72 ~~~~il~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~---n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~ 148 (517)
..-.+.+.+...-.+..++.....|+++...+...+.+ .+.+.... +.....|....+..++.+++.+|+ +|.
T Consensus 35 ~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~av-~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l---~g~ 110 (448)
T 3meb_A 35 AILNLTVLYNADTNPKKVNLGVGAYRDESGKPWILPAV-KEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLM---FGK 110 (448)
T ss_dssp TTHHHHHHHHHCCCTTCEEESSCCCCCTTSCCCCCHHH-HHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHH---HCT
T ss_pred hHHHHHHHHHhCCCCCeEEeecccccCCCCCEechHHH-HHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHh---cCC
Confidence 45666666666544444555555565655444444443 34322222 223445666667778888888777 365
Q ss_pred CcccccCCCCceEE--cCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHH----HcCCCCCCEEEE
Q 010125 149 PKSFLFSGNGGGVI--QGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQ----IVGIDVKNFRAI 222 (517)
Q Consensus 149 ~~~~~~~~~~~g~~--t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~----~~G~g~~~v~~v 222 (517)
+... ......++ |+|||+|+..++...... . +++.|++++++|.++...++ ..|+ +++.+
T Consensus 111 ~~~~--~~~~~i~~~~t~ggt~al~l~~~~~~~~--~-------~gd~Vlv~~p~~~~~~~~~~~~~~~~G~---~v~~~ 176 (448)
T 3meb_A 111 DSKA--AQEGRIASCQSLSGTGSLHIGFEFLHLW--M-------PKAEFYMPSTTWPNHYGIYDKVFNKLKV---PYKEY 176 (448)
T ss_dssp TCHH--HHTTCEEEEEESHHHHHHHHHHHHHHHH--C-------TTCCEEEESSCCTHHHHHHHHHHCTTTS---CCEEE
T ss_pred Cccc--cCcCcEEEEECCcHHHHHHHHHHHHHHh--C-------CCCEEEECCCCCHhHHHHHHhhHHhCCC---eEEEE
Confidence 4100 00026788 999999997644322211 1 45668889999999999999 8899 99999
Q ss_pred ec-CCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccC---hhHHHHHHHHhCCeEEcccccccccccCc-
Q 010125 223 KT-TKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACICP- 297 (517)
Q Consensus 223 p~-d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idp---l~eI~~i~~~~gi~lhvDaA~g~~~~~~~- 297 (517)
|+ ++++++.+|+++|++++++.. ....+++.+.++|+||.+-+ +++|+++|++||+++++|++|+++.....
T Consensus 177 ~~~~~~~~~~~d~e~l~~~l~~~~---~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~ 253 (448)
T 3meb_A 177 TYLRKDGELEIDFSNTKKDIQSAP---EKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFE 253 (448)
T ss_dssp CCBCTTSCSSBCHHHHHHHHHHSC---TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHH
T ss_pred eccccccCCCcCHHHHHHHHHhCC---CCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcc
Confidence 98 542158999999999997521 12357788889999999865 56699999999999999999987654321
Q ss_pred ----cccccccCCCCCCeeeeccccccCC-CCcceEE--EE--------eCchh---HHhhhcCCccccCCccccccccc
Q 010125 298 ----EFRHFIDGVEGADSFSLNAHKWFFA-TLDCCCL--WV--------KDPRA---LVSSLSTNPEYLKNKATESMQVV 359 (517)
Q Consensus 298 ----~~~~~~~g~~~aDsi~~~~hK~l~~-p~~~g~l--~~--------~~~~~---~~~~~~~~~~yl~~~~~~~~~~~ 359 (517)
....... ...-..++.++||.++. ...+|++ ++ .++.. +...+.. ....
T Consensus 254 ~~~~~~~~~~~-~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~---~~~~--------- 320 (448)
T 3meb_A 254 ADAFAVRMFVD-AGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTL---QIRK--------- 320 (448)
T ss_dssp HHTHHHHHHHH-TTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHH---HHHT---------
T ss_pred cCchhHHHHhh-cCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHH---HHhc---------
Confidence 0111111 11222557889999974 3567887 45 33311 1111110 0000
Q ss_pred cCCCccccCCCCCCchHHHHHHHHhcH--------HHHHHHHHHHHHHHHHHHHHHhcC--CC------eEEecCCCeeE
Q 010125 360 DYKDWQITLSRRFRSLKLWFVIRNYGV--------ANLRHFLRSHVNMAKLFERLVSGD--KR------FEIVFPCHFAV 423 (517)
Q Consensus 360 ~~~~~~~~~sr~~~al~~~~~l~~~g~--------~g~~~~i~~~~~~a~~l~~~l~~~--~~------~~l~~~~~~~~ 423 (517)
+.. ....+..+++...+.. +.++++.++..++++++.+.|+++ ++ ++.. .|+.++
T Consensus 321 -----~~~---~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~-~~~~g~ 391 (448)
T 3meb_A 321 -----TWS---MSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHI-LTAIGM 391 (448)
T ss_dssp -----TTS---SCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHH-HHCCSS
T ss_pred -----ccC---CccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCccccccee-CCCceE
Confidence 000 0122333444333321 346777888889999999999876 44 4332 244445
Q ss_pred EEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHH-HhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHH
Q 010125 424 VCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESI-NASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWT 502 (517)
Q Consensus 424 v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~ 502 (517)
++|.-.+ .++...+ .+.|+.+.++. .|+++.. . ++++|+++++
T Consensus 392 ~~~~~~~---------------------------~~~~~~ll~~~gV~v~~G~-------gRis~a~-~-~~~~i~~~~~ 435 (448)
T 3meb_A 392 FTFTGLT---------------------------PEHVDYLKEKWSIYLVKAG-------GRMSMCG-L-TESNCDYVAE 435 (448)
T ss_dssp EEECCCC---------------------------HHHHHHHHHHHCEEECSGG-------GEEEGGG-C-CTTTHHHHHH
T ss_pred EEecCCC---------------------------HHHHHHHHHhCCEEEeCCC-------cEEEEec-C-CHHHHHHHHH
Confidence 4442111 1223333 34575443322 2999853 3 3447999999
Q ss_pred HHHHHHHH
Q 010125 503 VVQQHLEA 510 (517)
Q Consensus 503 ~l~~~~~~ 510 (517)
+|.++.++
T Consensus 436 ~l~~~l~~ 443 (448)
T 3meb_A 436 AIHDAVTK 443 (448)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998774
No 182
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.82 E-value=1.7e-19 Score=185.52 Aligned_cols=307 Identities=11% Similarity=0.018 Sum_probs=186.5
Q ss_pred cccccChhhHHHHHHHHHHHHHHcC-CCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCC
Q 010125 123 FNWISSPAATELENIVMDWLGQMLK-LPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQT 201 (517)
Q Consensus 123 ~~~~~sp~~~~lE~~v~~~l~~l~g-~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~ 201 (517)
..|...++..++++.+++|+. .| .+++ ..++|+|+++++..++. .. . +++.|++.+++
T Consensus 69 ~~y~~~~g~~~lr~~la~~l~--~g~~~~~-------~v~~~~G~~~al~~~~~-~~----~-------~gd~Vl~~~p~ 127 (400)
T 3asa_A 69 RGYGPDFGLPALRQKLSEDFY--RGFVDAK-------EIFISDGAKVDLFRLLS-FF----G-------PNQTVAIQDPS 127 (400)
T ss_dssp CCCCCTTCCHHHHHHHHHTTS--TTSSCGG-------GEEEESCHHHHHHHHHH-HH----C-------SSCEEEEEESC
T ss_pred cCCCCCCCCHHHHHHHHHHHH--cCCCCHH-------HEEEccChHHHHHHHHH-Hc----C-------CCCEEEECCCC
Confidence 345544567777777776653 46 4443 68999999998865432 21 1 45568888899
Q ss_pred chHHHHHHHHcCCCCCC-EEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccC---hhHHHHHHH
Q 010125 202 HCALQKAAQIVGIDVKN-FRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDP---LKPLCDVAK 277 (517)
Q Consensus 202 H~s~~kaa~~~G~g~~~-v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idp---l~eI~~i~~ 277 (517)
|.++..+++..|. + ++.+|+++++.+..|+ ++. ..+.+|+++.++|++|.+-| +++|+++|+
T Consensus 128 y~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~l---~~~--------~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~ 193 (400)
T 3asa_A 128 YPAYLDIARLTGA---KEIIALPCLQENAFFPEF---PED--------THIDILCLCSPNNPTGTVLNKDQLRAIVHYAI 193 (400)
T ss_dssp CHHHHHHHHHTTC---SEEEEEECCGGGTTCCCC---CTT--------CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCC---cceEecccchhcCcccCh---hhc--------cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHH
Confidence 9999999999998 8 9999987533333443 211 12346777789999999976 667899999
Q ss_pred HhCCeEEcccccccccccCccccccccCCC---CCCeeeeccccccC-CCCcceEEEEeCchh------HHhhhcCCccc
Q 010125 278 QFGIWVHVDAAYAGSACICPEFRHFIDGVE---GADSFSLNAHKWFF-ATLDCCCLWVKDPRA------LVSSLSTNPEY 347 (517)
Q Consensus 278 ~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~---~aDsi~~~~hK~l~-~p~~~g~l~~~~~~~------~~~~~~~~~~y 347 (517)
+||+++++|++|+.+.... .....+..+. ..+.+..+++|+++ ....+|++++++... +..........
T Consensus 194 ~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (400)
T 3asa_A 194 EHEILILFDAAYSTFISDP-SLPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQELTYADGHFVIQDWERFLST 272 (400)
T ss_dssp HTTCEEEEECTTGGGCCCT-TSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHH
T ss_pred HcCCEEEEEchhhhhhcCC-CCCCchhhCCCCCCceEEEecchhhcCCcchheeEEeeChhhccchhhhHHHHHHHHhcc
Confidence 9999999999998654221 1011111121 23477889999997 446689988765431 11111000000
Q ss_pred cCCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCeeEEEEE
Q 010125 348 LKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFR 427 (517)
Q Consensus 348 l~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~~~~v~f~ 427 (517)
+. . ....+...++...+....++++.++..++++++.+.|++. ++++..+...+++.++
T Consensus 273 -----------------~~-~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~ 331 (400)
T 3asa_A 273 -----------------TF-N--GASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLAT-GFEVFGGEHAPYLWVK 331 (400)
T ss_dssp -----------------HC-C--CCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHT-TCEEEECSSSSEEEEE
T ss_pred -----------------Cc-c--CCChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHC-CCeeeCCCCceEEEEe
Confidence 00 0 0122233333333321146677788888999999999887 7887754445566666
Q ss_pred -ecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHh-cCcEEEeeeeE--CCEeEEEEEecCCCCcHHHHHHHHHH
Q 010125 428 -VSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINA-SGKAYMTHAVL--GGIYAIRFATGATLTEKRHVVVAWTV 503 (517)
Q Consensus 428 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~--~g~~~lR~~~~~~~t~~~di~~l~~~ 503 (517)
+... . + ..++.+.|.+ .|+...++..+ .+..++|+++ .++++++++++++
T Consensus 332 ~~~~~-~---------------~-------~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~---~~~~e~i~~~l~~ 385 (400)
T 3asa_A 332 PTQAN-I---------------S-------DRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSS---LGKREDILAACER 385 (400)
T ss_dssp CCCTT-C---------------C-------TTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEEC---CSCHHHHHHHHHH
T ss_pred ccCCC-C---------------C-------HHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEEe---eCCHHHHHHHHHH
Confidence 4321 0 0 1234555544 47654443332 2346899995 3578899999999
Q ss_pred HHHHHHHHH
Q 010125 504 VQQHLEAFQ 512 (517)
Q Consensus 504 l~~~~~~l~ 512 (517)
|.++.++..
T Consensus 386 l~~~~~~~~ 394 (400)
T 3asa_A 386 LQMAPALQS 394 (400)
T ss_dssp HHC------
T ss_pred HHHHHHhhh
Confidence 988876543
No 183
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.82 E-value=3.9e-19 Score=189.71 Aligned_cols=370 Identities=8% Similarity=0.028 Sum_probs=219.5
Q ss_pred ChHHHHHHHHHhcccccccccc-cChhhHHHHHHHHHHHHHHc-C-CCcccccCCCCceEEcCCchHHHHHHHHHHHHHH
Q 010125 105 SIAGFLGEMLSSGFNIVGFNWI-SSPAATELENIVMDWLGQML-K-LPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRV 181 (517)
Q Consensus 105 ~~~~~~~~~l~~~~n~~~~~~~-~sp~~~~lE~~v~~~l~~l~-g-~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~ 181 (517)
.++.++.++....... .|. ...+..++++++.+++.+.. + .+... ....++|+|||+|+..++.+.....
T Consensus 116 ~~~~~v~a~~~~~~~~---~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~----~~~i~~t~G~t~al~~~~~~l~~~~ 188 (533)
T 3f6t_A 116 NRDKVVAEWVNGAVAN---NYPVPDRCLVNTEKIINYFLQELSYKDANLAE----QTDLFPTEGGTAAIVYAFHSLAENH 188 (533)
T ss_dssp CHHHHHHHHHHHHHTC---SCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGG----GEEEEEEEHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHhC---CCCCCcccHHHHHHHHHHHHHHhcCCCCCCCC----cceEEEECCHHHHHHHHHHHhhhhh
Confidence 3566666665554431 333 45567899999999997773 3 33210 0268999999999988776532110
Q ss_pred HHHhcccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCC--CCCcccCHHHHHHHHHHhHhcCCcceEEEeecc
Q 010125 182 LNKIGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTK--SSSYGLSPDSLMAQINSDVEVGLIPLFLCATIG 259 (517)
Q Consensus 182 ~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~--~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~g 259 (517)
+ ..+++.|+++.++|.++..+++..|. +++.+|++. ++++.+|+++|++++++++ .+|+++.+
T Consensus 189 l------~~~gd~Viv~~p~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~d~~~l~~~l~~~~------k~v~l~~p 253 (533)
T 3f6t_A 189 L------LKKGDKIAINEPIFTPYLRIPELKDY---ELVEVDLHSYEKNDWEIEPNEIEKLKDPSI------KALIVVNP 253 (533)
T ss_dssp S------SCTTCEEEEESSCCHHHHTSGGGGGS---EEEEECCCEETTTTSEECHHHHHHHSCTTE------EEEEEESS
T ss_pred c------cCCcCEEEEcCCCcHHHHHHHHHcCC---eEEEEEecCCcccCCCCCHHHHHHHhCCCC------eEEEEeCC
Confidence 0 01567789999999999999999999 999999864 3468999999999986543 37777899
Q ss_pred CCccccccChh---HHHHHHH-HhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCC-CCcceEEEEeCc
Q 010125 260 TTAITAVDPLK---PLCDVAK-QFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFA-TLDCCCLWVKDP 334 (517)
Q Consensus 260 tt~~G~idpl~---eI~~i~~-~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~-p~~~g~l~~~~~ 334 (517)
++++|.+-|.+ +|+++|+ +||+++++|.+|+.+...... ........+.++.+++|.++. ...+|++++++.
T Consensus 254 ~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~---~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~ 330 (533)
T 3f6t_A 254 TNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKS---IYSVVPYNTMLVYSYSKLFGCTGWRLGVIALNEK 330 (533)
T ss_dssp CTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCC---HHHHSGGGEEEEEESHHHHTCGGGCEEEEEEESS
T ss_pred CCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccC---HhhcCCCCEEEEecCcccCCCcccceEEEEECcH
Confidence 99999997665 8888888 589999999999865532211 111122455888899999974 355899988876
Q ss_pred hhHHhhhcCCcc---------c--cCCccccc-------cccccCCCccccCCCCCCchHHHH----HHHHh--------
Q 010125 335 RALVSSLSTNPE---------Y--LKNKATES-------MQVVDYKDWQITLSRRFRSLKLWF----VIRNY-------- 384 (517)
Q Consensus 335 ~~~~~~~~~~~~---------y--l~~~~~~~-------~~~~~~~~~~~~~sr~~~al~~~~----~l~~~-------- 384 (517)
..+...+..-++ | +....... ............ ........+ ++..+
T Consensus 331 ~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~---~~~~~~q~a~a~~a~~~L~~~~g~~~ 407 (533)
T 3f6t_A 331 NVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTA---GLSTPQQIMEALFSMTHLLTSTNGGS 407 (533)
T ss_dssp CHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGC---SCCHHHHHHHHHHHHHHHTTCBGGGT
T ss_pred HHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhccc---CCChHHHHHHHHHHHHHHhhhccccc
Confidence 433222211100 0 00000000 000000000000 111122222 23333
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCeeEEEEEecCCCcchhhhhhhhhccccchHH-HH--HHHHHHHH
Q 010125 385 GVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEE-QI--NEFNRELL 461 (517)
Q Consensus 385 g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~l~ 461 (517)
..+.++++.+++.++++++.+.|. . ++.+. .+..++++|.-.+.-. . .+ .+.... .. +....++.
T Consensus 408 ~~~~~~~~~~~~~~r~~~l~~~L~-~-~~~~~-~~~~g~~~~~~l~~~~----~---~~--~g~~~~~~~~~~~~~~~~~ 475 (533)
T 3f6t_A 408 DDPYIDIARKLVSERYDQLHDAMQ-A-PKDET-DTNTHYYSLIDIYRLA----E---KI--YGKEFRDYLTNNFEQVDFL 475 (533)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHT-C-CCCCS-TTBCCSEEEEEHHHHH----H---HH--HCHHHHHHHHHHCCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcC-C-Ccccc-CCCceEEEEEehHhhh----h---hc--cchHHHHHhhccCCHHHHH
Confidence 235567777888889999999997 5 45533 4555554443211000 0 00 000000 00 00112333
Q ss_pred HHH-HhcCcEEEeeeeEC-CEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHHhhcC
Q 010125 462 ESI-NASGKAYMTHAVLG-GIYAIRFATGATLTEKRHVVVAWTVVQQHLEAFQSAFK 516 (517)
Q Consensus 462 ~~l-~~~g~~~~~~~~~~-g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l~~~~~ 516 (517)
.++ .+.|+.+.++..+. +..++|+++.+ .+++++++++++|.++.+++.++++
T Consensus 476 ~~ll~~~GV~v~pg~~f~~~~~~iRls~a~--~~~e~i~~~i~~L~~~l~~~~~~~~ 530 (533)
T 3f6t_A 476 LKLAEKNGVVLVDGVGFGAKPGELRVSQAN--LPTEDYALIGKQVLELLKEYYEEFK 530 (533)
T ss_dssp HHHHHHTTSSSCTTEEECSSTTEEEEESSS--SCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCEEEeCCcccCCCCCEEEEEEee--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 343 45676544433332 24689999853 4677999999999999988877654
No 184
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.82 E-value=1e-18 Score=189.69 Aligned_cols=237 Identities=11% Similarity=0.103 Sum_probs=160.9
Q ss_pred HHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHHcCCCC
Q 010125 137 IVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQIVGIDV 216 (517)
Q Consensus 137 ~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~ 216 (517)
++.+.+++++|.+.. .++++|+|.||..++.+..+ +++.|+++..+|.|+..++.+.|+
T Consensus 199 eaE~~lA~~fGa~~a--------~~v~nGts~An~~ai~al~~-----------pGD~VLv~r~~H~S~~~~l~lsGa-- 257 (715)
T 3n75_A 199 EAEQYIARVFNADRS--------YMVTNGTSTANKIVGMYSAP-----------AGSTILIDRNCHKSLTHLMMMSDV-- 257 (715)
T ss_dssp HHHHHHHHHHTCSEE--------EEESSHHHHHHHHHHHHHCC-----------TTCEEEEESSCCHHHHHHHHHSCC--
T ss_pred HHHHHHHHHhCCCCc--------eEECcHHHHHHHHHHHHhCC-----------CCCEEEECCCccHHHHHHHHHcCC--
Confidence 455778889998753 35666667898877766532 677899999999999999999999
Q ss_pred CCEEEEecCCCCCcc----c-----CHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEccc
Q 010125 217 KNFRAIKTTKSSSYG----L-----SPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDA 287 (517)
Q Consensus 217 ~~v~~vp~d~~~~~~----~-----d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDa 287 (517)
.++.++.+.+ ++. + |+++|+++|++..+. +.|.+|+++.+ |++|.+.|+++|+++|+++ ++|||+
T Consensus 258 -~pv~v~~~~~-~~gi~~~i~~~~~d~e~Le~~l~~~~~~-k~p~~vivt~p-n~~G~v~dl~~I~ela~~~--~livDE 331 (715)
T 3n75_A 258 -TPIYFRPTRN-AYGILGGIPQSEFQHATIAKRVKETPNA-TWPVHAVITNS-TYDGLLYNTDFIKKTLDVK--SIHFDS 331 (715)
T ss_dssp -EEEEECCCBC-TTCCBCCCCGGGGSHHHHHHHHHHSTTC-CSCSEEEEESS-CTTSEEECHHHHHHHCCCS--EEEEEC
T ss_pred -EEEEEecccc-ccccccCcccccCCHHHHHHHHhhCcCc-cCceEEEEECC-CCCCccCCHHHHHHHhCcC--cEEEcc
Confidence 9999987642 333 3 899999999875321 23557888888 8999999999999999876 389999
Q ss_pred ccccccccCcccccc--ccCCCCCCee---eeccccccCCCCcceEEEEeCchhHHhhhcCCccccCCccccccccccCC
Q 010125 288 AYAGSACICPEFRHF--IDGVEGADSF---SLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYK 362 (517)
Q Consensus 288 A~g~~~~~~~~~~~~--~~g~~~aDsi---~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~ 362 (517)
||++++.+.+..... +..-..+|.+ +.++||+|+++.++|++++++... ...+.....++..
T Consensus 332 AH~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~-~~~~~~~~~~~~S------------ 398 (715)
T 3n75_A 332 AWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVN-EETFNEAYMMHTT------------ 398 (715)
T ss_dssp TTCTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCC-HHHHHHHHHHTSC------------
T ss_pred ccccccccCCccccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCchhh-HHHHHHHHHhhcC------------
Confidence 999876555443311 1111136876 899999999988999999986521 1111111111110
Q ss_pred CccccCCCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC------eEEecC
Q 010125 363 DWQITLSRRF-RSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKR------FEIVFP 418 (517)
Q Consensus 363 ~~~~~~sr~~-~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~------~~l~~~ 418 (517)
.+-.. ...++-++++.+-...-.+++++..+++++|++.|+++++ |+++.+
T Consensus 399 -----TSpsy~~~AsldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~ 456 (715)
T 3n75_A 399 -----TSPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQP 456 (715)
T ss_dssp -----SSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSC
T ss_pred -----CCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCc
Confidence 11111 1123333444443222255788999999999999988754 676644
No 185
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.82 E-value=8.9e-20 Score=187.02 Aligned_cols=320 Identities=11% Similarity=0.029 Sum_probs=202.0
Q ss_pred HHHHHHHHhcccc-cccccccChhhHHHHHHHHHHHHHHcCC--CcccccCCCCceEE--cCCchHHHHHHHHHHHHHHH
Q 010125 108 GFLGEMLSSGFNI-VGFNWISSPAATELENIVMDWLGQMLKL--PKSFLFSGNGGGVI--QGTTCEAILCTLTAARDRVL 182 (517)
Q Consensus 108 ~~~~~~l~~~~n~-~~~~~~~sp~~~~lE~~v~~~l~~l~g~--~~~~~~~~~~~g~~--t~ggt~a~~~al~~ar~~~~ 182 (517)
..+.+.+...+.. ....|...++..++++.+.+|+.+..+. +++ ..++ |+|||+|+..++.+++..
T Consensus 47 ~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~-------~v~~~~~~g~~~a~~~~~~~~~~~-- 117 (396)
T 2q7w_A 47 TSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDK-------RARTAQTPGGTGALRVAADFLAKN-- 117 (396)
T ss_dssp HHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTT-------CEEEEEESHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHhhcCcccccCCCCCCCCHHHHHHHHHHHhcCCCCccccc-------cEEEEecccchhhHHHHHHHHHHh--
Confidence 3445555544322 3345656667888999988888654332 122 5676 999999998887665431
Q ss_pred HHhcccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCc
Q 010125 183 NKIGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTA 262 (517)
Q Consensus 183 ~~~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~ 262 (517)
. +++.|++..++|.++..+++..|. +++.+|.++.+++.+|+++|++++++.. ....+++.+.++|+
T Consensus 118 ~-------~gd~Vl~~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~~---~~~~~v~~~~p~np 184 (396)
T 2q7w_A 118 T-------SVKRVWVSNPSWPNHKSVFNSAGL---EVREYAYYDAENHTLDFDALINSLNEAQ---AGDVVLFHGCCHNP 184 (396)
T ss_dssp S-------CCCEEEEEESCCTHHHHHHHHTTC---EEEEEECEETTTTEECHHHHHHHHTTCC---TTCEEEEECSSCTT
T ss_pred C-------CCCEEEEcCCCchhHHHHHHHcCC---ceEEEecccCCCCCcCHHHHHHHHHhCC---CCCEEEEeCCCCCC
Confidence 0 456688888999999999999999 9999998532357899999999997531 12357778999999
Q ss_pred cccccC---hhHHHHHHHHhCCeEEcccccccccccC--c--cccccccCCCCCCeeeeccccccC-CCCcceEEEE--e
Q 010125 263 ITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIC--P--EFRHFIDGVEGADSFSLNAHKWFF-ATLDCCCLWV--K 332 (517)
Q Consensus 263 ~G~idp---l~eI~~i~~~~gi~lhvDaA~g~~~~~~--~--~~~~~~~g~~~aDsi~~~~hK~l~-~p~~~g~l~~--~ 332 (517)
||.+-+ +++|+++|++||+++++|++|+++.... + .... +......+.++.++||+++ ....+|++++ +
T Consensus 185 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~ 263 (396)
T 2q7w_A 185 TGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRA-FAAMHKELIVASSYSXNFGLYNERVGACTLVAA 263 (396)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHH-HHHHCSCEEEEEECTTTTTCGGGCCEEEEEECS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHH-HHhcCCcEEEEEeccccccccccccceEEEEcC
Confidence 999854 6689999999999999999998764321 0 1111 1111123466888999997 3455799886 3
Q ss_pred Cchh---HHhhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhc--------HHHHHHHHHHHHHHHH
Q 010125 333 DPRA---LVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYG--------VANLRHFLRSHVNMAK 401 (517)
Q Consensus 333 ~~~~---~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g--------~~g~~~~i~~~~~~a~ 401 (517)
+++. +...+.. +... +..+ ...+..+++...+. .+.++++.++..++++
T Consensus 264 ~~~~~~~~~~~~~~---~~~~--------------~~~~---~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 323 (396)
T 2q7w_A 264 DSETVDRAFSQMKA---AIRA--------------NYSN---PPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQ 323 (396)
T ss_dssp SHHHHHHHHHHHHH---HHHT--------------TTSS---CCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHH
T ss_pred CHHHHHHHHHHHHH---HHhh--------------ccCC---CCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHH
Confidence 4421 2111110 0000 0000 12233344444332 2456677788888999
Q ss_pred HHHHHHhcCC---CeEEecCCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeEC
Q 010125 402 LFERLVSGDK---RFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLG 478 (517)
Q Consensus 402 ~l~~~l~~~~---~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~ 478 (517)
++.+.|++.. ++++. +|..+++.|. .-. ...+.+.+.+.|+.. .+
T Consensus 324 ~l~~~L~~~~~~~~~~~~-~~~~~~~~~~-~~~-------------------------~~~~~~~l~~~gv~v-~~---- 371 (396)
T 2q7w_A 324 LFVNTLQEKGANRDFSFI-IKQNGMFSFS-GLT-------------------------KEQVLRLREEFGVYA-VA---- 371 (396)
T ss_dssp HHHHHHHHTTCCSCCTHH-HHCCSSEEEC-CCC-------------------------HHHHHHHHHHHCEEC-CT----
T ss_pred HHHHHHHhcCCCCCccee-cCCCceEEEe-cCC-------------------------HHHHHHHHHhcCeee-cC----
Confidence 9999998874 35543 3444444432 111 123444455667543 32
Q ss_pred CEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 010125 479 GIYAIRFATGATLTEKRHVVVAWTVVQQH 507 (517)
Q Consensus 479 g~~~lR~~~~~~~t~~~di~~l~~~l~~~ 507 (517)
.+|+++.. .+++++++++++|+++
T Consensus 372 ---~~Ris~~~--~~~e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 372 ---SGRVNVAG--MTPDNMAPLCEAIVAV 395 (396)
T ss_dssp ---TCEEEGGG--CCTTTHHHHHHHHHHH
T ss_pred ---CceEEEee--cCHHHHHHHHHHHHhc
Confidence 26999863 2677999999998764
No 186
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.81 E-value=4.1e-19 Score=182.40 Aligned_cols=281 Identities=14% Similarity=0.123 Sum_probs=182.8
Q ss_pred HHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHH----HHH
Q 010125 136 NIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKA----AQI 211 (517)
Q Consensus 136 ~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~ka----a~~ 211 (517)
.++++.+++++|.+ ..+++++||+|+..++. ... +++.|+++...|.+.... ++.
T Consensus 58 ~~lr~~la~~~g~~---------~~i~~~sGt~a~~~al~-~~~-----------~gd~Vi~~~~~y~~~~~~~~~~~~~ 116 (393)
T 1n8p_A 58 ENLERAVAALENAQ---------YGLAFSSGSATTATILQ-SLP-----------QGSHAVSIGDVYGGTHRYFTKVANA 116 (393)
T ss_dssp HHHHHHHHHHTTCS---------EEEEESCHHHHHHHHHH-TSC-----------SSCEEEEESSCCHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHhCCC---------cEEEECChHHHHHHHHH-HcC-----------CCCEEEEeCCCchHHHHHHHHHHHH
Confidence 34556677777765 24666667999988776 321 455677888888865553 445
Q ss_pred cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHh----CCeEEccc
Q 010125 212 VGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQF----GIWVHVDA 287 (517)
Q Consensus 212 ~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~----gi~lhvDa 287 (517)
.|+ +++.+|++ | ++|+++|++++ .+|+++.+++++|.+.|+++|+++|++| |+++|+|+
T Consensus 117 ~G~---~v~~v~~~-------d-~~l~~~i~~~t------~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~ 179 (393)
T 1n8p_A 117 HGV---ETSFTNDL-------L-NDLPQLIKENT------KLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDN 179 (393)
T ss_dssp TCS---CCEEESSH-------H-HHHHHHSCSSE------EEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEEC
T ss_pred cCc---EEEEeCCC-------h-HHHHHhcccCc------eEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeC
Confidence 677 88988863 6 88888886543 4788899999999999999999999999 99999999
Q ss_pred ccccccccCccccccccCCCCCCeeeeccccccCCCC-cc-eEEEEeCchhHHhhhcCCccccCCccccccccccCCCcc
Q 010125 288 AYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATL-DC-CCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQ 365 (517)
Q Consensus 288 A~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~-~~-g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~ 365 (517)
+|+.+... .... . ++|.++.++||+++.+. .. |+++++++.... .+.. + ..
T Consensus 180 a~~~~~~~--~~~~----~-~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~-~l~~---~-~~--------------- 232 (393)
T 1n8p_A 180 TFLSPYIS--NPLN----F-GADIVVHSATKYINGHSDVVLGVLATNNKPLYE-RLQF---L-QN--------------- 232 (393)
T ss_dssp TTTHHHHC--CGGG----G-TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHH-HHHH---H-HH---------------
T ss_pred CccccccC--CHHH----c-CCeEEEEECcccccCCCCceeEEEEeCCHHHHH-HHHH---H-HH---------------
Confidence 99877653 1111 1 68999999999997542 15 777776554332 2210 0 00
Q ss_pred ccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC-eEEe-cC-----C------------C-eeEEE
Q 010125 366 ITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKR-FEIV-FP-----C------------H-FAVVC 425 (517)
Q Consensus 366 ~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~-~~l~-~~-----~------------~-~~~v~ 425 (517)
..+........|++++.+ +.+..++++..++++.+.+.|++.+. +.-+ .+ + . .++++
T Consensus 233 -~~g~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~ 309 (393)
T 1n8p_A 233 -AIGAIPSPFDAWLTHRGL--KTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMIS 309 (393)
T ss_dssp -HHCCCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEE
T ss_pred -hcCCCCCHHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEE
Confidence 001112344555544433 44667778888889999999988766 5432 11 1 2 56888
Q ss_pred EEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhc------CcEE---Eee--eeE----------CC--EeE
Q 010125 426 FRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINAS------GKAY---MTH--AVL----------GG--IYA 482 (517)
Q Consensus 426 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~------g~~~---~~~--~~~----------~g--~~~ 482 (517)
|.+.+. ......+.+.+... |.++ ..+ ... .| ...
T Consensus 310 ~~l~~~----------------------~~~~~~~l~~l~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~ 367 (393)
T 1n8p_A 310 FRIKGG----------------------AEAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDL 367 (393)
T ss_dssp EEESSC----------------------HHHHHHHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTE
T ss_pred EEeCCc----------------------HHHHHHHHhhCCcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCe
Confidence 888543 12234555555322 2110 100 000 12 368
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHHH
Q 010125 483 IRFATGATLTEKRHVVVAWTVVQQH 507 (517)
Q Consensus 483 lR~~~~~~~t~~~di~~l~~~l~~~ 507 (517)
+|+|++ ..+++++|+.+.++|+++
T Consensus 368 iRlS~g-~~~~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 368 VRISVG-IEDTDDLLEDIKQALKQA 391 (393)
T ss_dssp EEEECC-SSCHHHHHHHHHHHHHHH
T ss_pred EEEEEc-cCCHHHHHHHHHHHHHHh
Confidence 999994 678888999999888765
No 187
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=99.81 E-value=2e-18 Score=177.52 Aligned_cols=300 Identities=14% Similarity=0.043 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCC-CeEEEeCCCCchHHHHHHHH
Q 010125 133 ELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENIS-KLIVYGSDQTHCALQKAAQI 211 (517)
Q Consensus 133 ~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~-~~~v~~s~~~H~s~~kaa~~ 211 (517)
....++.+++++++|.+ .+++|+|||+|+..++.+++.....+ |.. + +.+|+.+...|.+...+...
T Consensus 81 ~~~~~l~~~la~~~~~~---------~v~~~~gg~~a~~~al~~~~~~~~~~-~~~--g~~~vi~~~~~y~~~~~~~~~~ 148 (406)
T 4adb_A 81 EPVLRLAKKLIDATFAD---------RVFFCNSGAEANEAALKLARKFAHDR-YGS--HKSGIVAFKNAFHGRTLFTVSA 148 (406)
T ss_dssp HHHHHHHHHHHHHSSCS---------EEEEESSHHHHHHHHHHHHHHHHHHH-TCT--TCCEEEEETTCCCCSSHHHHHH
T ss_pred HHHHHHHHHHHhhCCCC---------eEEEeCcHHHHHHHHHHHHHHHHHhc-CCC--CCcEEEEECCCcCCCcHHHhhc
Confidence 34556778888888754 57999999999999998876532211 111 3 44555555555555555554
Q ss_pred cCCCC---------CCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc-----cChhHHHHHHH
Q 010125 212 VGIDV---------KNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV-----DPLKPLCDVAK 277 (517)
Q Consensus 212 ~G~g~---------~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i-----dpl~eI~~i~~ 277 (517)
.|... ..+..+|. .|+++|++++++++ .+|+++ +++++|.+ +++++|+++|+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~~~------~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~ 214 (406)
T 4adb_A 149 GGQPAYSQDFAPLPADIRHAAY-------NDINSASALIDDST------CAVIVE-PIQGEGGVVPASNAFLQGLRELCN 214 (406)
T ss_dssp SSCGGGTGGGCSCCSSEEEECT-------TCHHHHHTTCSTTE------EEEEEC-SEETTTTSEECCHHHHHHHHHHHH
T ss_pred cCCccccccCCCCCCCceEeCC-------CcHHHHHHHhcCCe------EEEEEe-CCcCCCCCccCCHHHHHHHHHHHH
Confidence 44210 14444443 38999999887443 367777 77888754 57999999999
Q ss_pred HhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCccccCCccccccc
Q 010125 278 QFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQ 357 (517)
Q Consensus 278 ~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~ 357 (517)
+||+++|+|++|+++............++ ..|.+++ ||+++.+..+|+++.++. . .+.+... ...
T Consensus 215 ~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~d~~t~--sK~~~~G~r~G~~~~~~~-~-~~~~~~~---~~~------- 279 (406)
T 4adb_A 215 RHNALLIFDEVQTGVGRTGELYAYMHYGV-TPDLLTT--AKALGGGFPVGALLATEE-C-ARVMTVG---THG------- 279 (406)
T ss_dssp HTTCEEEEECTTTTTTTTSSSSHHHHHTC-CCSEEEE--CGGGGTTSCCEEEEECHH-H-HHTCCTT---SSC-------
T ss_pred HcCCEEEEeccccCCCccchhHHHHhcCC-CCCEEEe--chhhcCCCCeEEEEEcHH-H-HhhhccC---CcC-------
Confidence 99999999999975432221111111122 4677765 999996667998877543 2 2222111 000
Q ss_pred cccCCCccccCCCCCCchHHHH---HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC----CCeEEecCCCeeEEEEEecC
Q 010125 358 VVDYKDWQITLSRRFRSLKLWF---VIRNYGVANLRHFLRSHVNMAKLFERLVSGD----KRFEIVFPCHFAVVCFRVSP 430 (517)
Q Consensus 358 ~~~~~~~~~~~sr~~~al~~~~---~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~----~~~~l~~~~~~~~v~f~~~~ 430 (517)
.+.....+...+ +++.+.. +++.++..++++++.+.|++. +.+.-. .....++.|.+..
T Consensus 280 ----------~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~ 345 (406)
T 4adb_A 280 ----------TTYGGNPLASAVAGKVLELINT---PEMLNGVKQRHDWFVERLNTINHRYGLFSEV-RGLGLLIGCVLNA 345 (406)
T ss_dssp ----------CSSTTCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE-EEETTEEEEEECT
T ss_pred ----------CCCCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCceEE-EEEEEEEEEEEeC
Confidence 000112333333 3333322 566777788888888888764 122111 1223456666643
Q ss_pred CCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 010125 431 SPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHLEA 510 (517)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~ 510 (517)
.. .....++.+.|.++|+.+.+ .+..++|+++ +..++++++++++++|+++.++
T Consensus 346 ~~---------------------~~~~~~~~~~l~~~gi~v~~----~~~~~iRi~~-~~~~~~e~i~~~~~~l~~~l~~ 399 (406)
T 4adb_A 346 DY---------------------AGQAKQISQEAAKAGVMVLI----AGGNVVRFAP-ALNVSEEEVTTGLDRFAAACEH 399 (406)
T ss_dssp TT---------------------TTCHHHHHHHHHHTTEECEE----SSTTEEEECC-CTTCCHHHHHHHHHHHHHHHHH
T ss_pred Cc---------------------HHHHHHHHHHHHHCCcEEee----cCCCeEEEEC-CCCCCHHHHHHHHHHHHHHHHH
Confidence 20 00135677777778865433 2356899987 4677889999999999999887
Q ss_pred HHh
Q 010125 511 FQS 513 (517)
Q Consensus 511 l~~ 513 (517)
+.+
T Consensus 400 ~~~ 402 (406)
T 4adb_A 400 FVS 402 (406)
T ss_dssp HHC
T ss_pred HHh
Confidence 754
No 188
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=99.81 E-value=6.1e-18 Score=176.07 Aligned_cols=319 Identities=9% Similarity=-0.070 Sum_probs=187.2
Q ss_pred hhHHHHHHHHHHHHHHcCCCc-ccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHH
Q 010125 130 AATELENIVMDWLGQMLKLPK-SFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKA 208 (517)
Q Consensus 130 ~~~~lE~~v~~~l~~l~g~~~-~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~ka 208 (517)
....+..++.++++++++... + ..+||+|||+|+..++.+++... .++.+|++....|.+...+
T Consensus 83 ~~~~~~~~l~~~la~~~~~~~~~-------~v~~~~ggsea~~~al~~~~~~~--------~~~~vi~~~~~yhg~~~~~ 147 (439)
T 3dxv_A 83 ASNAPAVTLAERLLASFPGEGTH-------KIWFGHSGSDANEAAYRAIVKAT--------GRSGVIAFAGAYHGCTVGS 147 (439)
T ss_dssp SEEHHHHHHHHHHHHTTTCTTTE-------EEEEESSHHHHHHHHHHHHHHHH--------SCCEEEEETTCCCCSSHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCCC-------EEEEeCCHHHHHHHHHHHHHHHh--------CCCEEEEECCCCCCCcHHH
Confidence 455677788899999885443 2 68999999999999999876531 1445666666666666655
Q ss_pred HHHcCCCC--C---------CEEEEecCCCCCccc-----CHHHHHHHHHHhHhcCCcceEEEeeccCCccccccC----
Q 010125 209 AQIVGIDV--K---------NFRAIKTTKSSSYGL-----SPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDP---- 268 (517)
Q Consensus 209 a~~~G~g~--~---------~v~~vp~d~~~~~~~-----d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idp---- 268 (517)
+...|... . .+..+|.+. .+.. |+++|+++|++. ....+.+|+++..++++|.+.|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~le~~l~~~--~~~~~~~vi~~p~~~~~G~~~~~~~~ 223 (439)
T 3dxv_A 148 MAFSGHSVQADAAKADGLILLPYPDPYRP--YRNDPTGDAILTLLTEKLAAV--PAGSIGAAFIEPIQSDGGLIVPPDGF 223 (439)
T ss_dssp HCC-------------CEEEECCCCSSSC--BTTBTTSHHHHHHHHHHHHTS--CTTCEEEEEECSSBSTTTSBCCCTTH
T ss_pred HhhcCCCchhhccccCCCCCCcEEcCCCc--ccccccHHHHHHHHHHHHHhc--CCCCEEEEEEccccCCCCCccCCHHH
Confidence 54444311 0 013344331 1122 799999999521 1123457777777888899988
Q ss_pred hhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCcccc
Q 010125 269 LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYL 348 (517)
Q Consensus 269 l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl 348 (517)
+++|+++|++||+++++|++|+++............++ ..|.+ ++.|.++..+..|+++.++. +.+.+... .
T Consensus 224 l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~-~~di~--s~sK~~~~G~riG~~~~~~~--~~~~~~~~---~ 295 (439)
T 3dxv_A 224 LRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGF-VPDIL--VLGKGLGGGLPLSAVIAPAE--ILDCASAF---A 295 (439)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTC-CCSEE--EECGGGGTTSCCEEEEEEHH--HHTSCSSS---S
T ss_pred HHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCC-CCCEE--EEcchhcCCcceEEEEECHH--HHhhhcCC---C
Confidence 99999999999999999999986422111011001112 35666 55799987777898887532 22222110 0
Q ss_pred CCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhc----CCCeEEecCCCeeEE
Q 010125 349 KNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSG----DKRFEIVFPCHFAVV 424 (517)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~----~~~~~l~~~~~~~~v 424 (517)
. ..+. ...+.+.+++..+..-.-++++++..++.+++++.|++ .+.+..+ ++..+++
T Consensus 296 ~-----------------~~t~-~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~ 356 (439)
T 3dxv_A 296 M-----------------QTLH-GNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDI-RGRGLAC 356 (439)
T ss_dssp C-----------------CTTT-TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEE
T ss_pred c-----------------CCCc-ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEE
Confidence 0 0011 23344444443331111134556666666676666654 4554443 3344556
Q ss_pred EEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHH
Q 010125 425 CFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVV 504 (517)
Q Consensus 425 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l 504 (517)
.+.+...... ... . .....++.+.+.++|.++.... ....++|+++ +...+++++++++++|
T Consensus 357 ~~~~~~~~~~----------~~~-~----~~~~~~~~~~l~~~Gv~v~~~~--~~~~~iRi~~-~~~~t~e~i~~~l~~l 418 (439)
T 3dxv_A 357 GMELVCDRQS----------REP-A----RAETAKLIYRAYQLGLVVYYVG--MNGNVLEFTP-PLTITETDIHKALDLL 418 (439)
T ss_dssp EEEEEEETTT----------TEE-C----HHHHHHHHHHHHHHTEECEEES--TTSCEEEECC-CTTCCHHHHHHHHHHH
T ss_pred EEEEecCccc----------cCC-C----HHHHHHHHHHHHHCCcEEeecC--CCCCEEEEEC-CCCCCHHHHHHHHHHH
Confidence 6655321000 000 0 2234567777777887554332 1236899997 4567888999999999
Q ss_pred HHHHHHHH
Q 010125 505 QQHLEAFQ 512 (517)
Q Consensus 505 ~~~~~~l~ 512 (517)
+++.+++.
T Consensus 419 ~~~l~~~~ 426 (439)
T 3dxv_A 419 DRAFSELS 426 (439)
T ss_dssp HHHHHTGG
T ss_pred HHHHHHHh
Confidence 99887663
No 189
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=99.81 E-value=6.1e-18 Score=173.47 Aligned_cols=299 Identities=12% Similarity=0.038 Sum_probs=177.9
Q ss_pred HHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCC-chHHHHHHH
Q 010125 132 TELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQT-HCALQKAAQ 210 (517)
Q Consensus 132 ~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~-H~s~~kaa~ 210 (517)
.....++.+++++++|. + ..++++|||+||..|+.+++...... | .++..|++.+.+ |.+...+..
T Consensus 77 ~~~~~~l~~~la~~~~~--~-------~v~~~~gg~ea~~~al~~~~~~~~~~-g---~~~~~vi~~~~~yhg~~~~~~~ 143 (395)
T 3nx3_A 77 NENIAAAAKNLAKASAL--E-------RVFFTNSGTESIEGAMKTARKYAFNK-G---VKGGQFIAFKHSFHGRTLGALS 143 (395)
T ss_dssp CHHHHHHHHHHHHHHTC--S-------EEEEESSHHHHHHHHHHHHHHHHHHT-T---CTTCEEEEETTCCCCSSHHHHT
T ss_pred CHHHHHHHHHHHHhcCC--C-------eEEEeCCHHHHHHHHHHHHHHHhhcc-C---CCCCEEEEEcCCcCCCCHHHHh
Confidence 45566777888888873 2 58999999999999998887643221 2 133445544444 433333322
Q ss_pred HcCC---------CCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccC----hhHHHHHHH
Q 010125 211 IVGI---------DVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDP----LKPLCDVAK 277 (517)
Q Consensus 211 ~~G~---------g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idp----l~eI~~i~~ 277 (517)
..+- -...+..+|.+ |+++|++++++++ .+|++...++++|.+.| +++|+++|+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~-------d~~~l~~~l~~~~------~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~ 210 (395)
T 3nx3_A 144 LTANEKYQKPFKPLISGVKFAKYN-------DISSVEKLVNEKT------CAIILESVQGEGGINPANKDFYKALRKLCD 210 (395)
T ss_dssp TCCCHHHHGGGCSCCSCEEEECTT-------CHHHHHTTCCTTE------EEEEEESEECTTSCEECCHHHHHHHHHHHH
T ss_pred hcCCcccccccCCCCCCcEEeCCC-------CHHHHHHhccCCe------EEEEEeCccCCCCcccCCHHHHHHHHHHHH
Confidence 2220 01155666542 7999999886443 36777777778898877 999999999
Q ss_pred HhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCccccCCccccccc
Q 010125 278 QFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQ 357 (517)
Q Consensus 278 ~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~ 357 (517)
+||+++|+|++|.++............++ ..|.+++ .|.++.++++|++++++.. +.+.+... ...
T Consensus 211 ~~~~~li~Dev~~~~g~~g~~~~~~~~~~-~~d~~t~--sK~~~~G~~~G~~~~~~~~-~~~~~~~~---~~~------- 276 (395)
T 3nx3_A 211 EKDILLIADEIQCGMGRSGKFFAYEHAQI-LPDIMTS--AKALGCGLSVGAFVINQKV-ASNSLEAG---DHG------- 276 (395)
T ss_dssp HHTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEEE--CGGGTTTSCCEEEEECHHH-HHHHSCTT---CCS-------
T ss_pred HcCCEEEEEecccCCCcCCcchhHHhcCC-CCCEEEe--cccccCCCceEEEEEchhh-hhhhcCCc---ccC-------
Confidence 99999999999976532211111111122 3566665 5999878889998876542 12233211 000
Q ss_pred cccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHh----cCCCeEEecCCCeeEEEEEecCCCc
Q 010125 358 VVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVS----GDKRFEIVFPCHFAVVCFRVSPSPV 433 (517)
Q Consensus 358 ~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~----~~~~~~l~~~~~~~~v~f~~~~~~~ 433 (517)
.+.....+...+++..+..-.-++..++..++.+++++.|+ +.|.+..+ ++..+++.|.+....
T Consensus 277 ----------~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~- 344 (395)
T 3nx3_A 277 ----------STYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFDFCKKR-KGLGFMQGLSLDKSV- 344 (395)
T ss_dssp ----------SCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEECTTS-
T ss_pred ----------CCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EeEEEEEEEEeCCcc-
Confidence 00111333333333333110012344555555556555554 35555433 234456667665320
Q ss_pred chhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 010125 434 LMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHLE 509 (517)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~ 509 (517)
...++.+.|.++|..+.+. +..++|+++ +..++++++++++++|+++.+
T Consensus 345 ----------------------~~~~~~~~l~~~Gi~v~~~----~~~~iRi~~-~~~~t~e~i~~~l~~l~~~l~ 393 (395)
T 3nx3_A 345 ----------------------KVAKVIQKCQENALLLISC----GENDLRFLP-PLILQKEHIDEMSEKLRKALK 393 (395)
T ss_dssp ----------------------CHHHHHHHHHHTTEECEEE----TTTEEEECC-CTTCCHHHHHHHHHHHHHHHH
T ss_pred ----------------------hHHHHHHHHHHCCCEEecC----CCCEEEEEC-CCCCCHHHHHHHHHHHHHHHH
Confidence 1345677777888754332 346899997 467788899999999988765
No 190
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.81 E-value=1.5e-19 Score=189.18 Aligned_cols=159 Identities=16% Similarity=0.160 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHH----H
Q 010125 134 LENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKA----A 209 (517)
Q Consensus 134 lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~ka----a 209 (517)
..+++.+|+++++|.+ ..+++++|++|+..++. .. .+++.|+++...|.++..+ +
T Consensus 134 ~~~~l~~~la~~~g~~---------~~i~~~sGt~al~~~l~-~~-----------~~Gd~Vi~~~~~y~~~~~~~~~~~ 192 (464)
T 1ibj_A 134 TRDALESLLAKLDKAD---------RAFCFTSGMAALSAVTH-LI-----------KNGEEIVAGDDVYGGSDRLLSQVV 192 (464)
T ss_dssp HHHHHHHHHHHHHTCS---------EEEEESSHHHHHHHHHT-TS-----------CTTCEEEEESSCCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhCCC---------eEEEECCHHHHHHHHHH-Hh-----------CCCCEEEEECCCchhHHHHHHHHH
Confidence 5677889999999875 35778888888765442 11 1556788888999888764 4
Q ss_pred HHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEccccc
Q 010125 210 QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAY 289 (517)
Q Consensus 210 ~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~ 289 (517)
+..|+ +++.+|++ |+++|+++|++++ .+|+++.++|++|.+.|+++|+++|++||+++|+|++|
T Consensus 193 ~~~G~---~v~~v~~~-------d~~~l~~~i~~~t------k~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~ 256 (464)
T 1ibj_A 193 PRSGV---VVKRVNTT-------KLDEVAAAIGPQT------KLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSI 256 (464)
T ss_dssp GGGTC---EEEEECTT-------SHHHHHHHCCSSE------EEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTT
T ss_pred HHcCC---EEEEeCCC-------CHHHHHHHhccCc------eEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCC
Confidence 56687 88888763 8899999987543 48889999999999999999999999999999999999
Q ss_pred ccccccCccccccccCCCCCCeeeeccccccCCCCcc--eEEEEeCchh
Q 010125 290 AGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDC--CCLWVKDPRA 336 (517)
Q Consensus 290 g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~--g~l~~~~~~~ 336 (517)
+.+....+. . .++|+++.++||+++.|.|+ |+++++++..
T Consensus 257 ~~g~~~~~~-----~--~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l 298 (464)
T 1ibj_A 257 MSPVLSRPL-----E--LGADIVMHSATKFIAGHSDVMAGVLAVKGEKL 298 (464)
T ss_dssp TCTTTCCGG-----G--TTCSEEEEETTTTTTCSSCCCCEEEEECSHHH
T ss_pred cccccCChh-----h--cCCEEEEECCcccccCCCCCcEEEEEEChHHH
Confidence 765432111 1 16899999999999987664 9888876443
No 191
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.81 E-value=1.3e-18 Score=177.55 Aligned_cols=298 Identities=14% Similarity=0.064 Sum_probs=179.7
Q ss_pred HHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCC---CchHHHHH
Q 010125 132 TELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQ---THCALQKA 208 (517)
Q Consensus 132 ~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~---~H~s~~ka 208 (517)
..+|+++.+++++++|.++. ...++++|||+|+..++.+. +++.|+++.. .|+++..+
T Consensus 57 ~~~~~~~~~~~a~~~g~~~~------~~~~~~~ggt~a~~~~~~~~-------------~gd~Vl~~~~~y~~~~~~~~~ 117 (374)
T 2aeu_A 57 SYFAEKVNEYGLKHLGGDEN------DKCVGFNRTSSAILATILAL-------------KPKKVIHYLPELPGHPSIERS 117 (374)
T ss_dssp HHHHHHHHHHHHHHHTCCTT------EEEEEESSHHHHHHHHHHHH-------------CCSEEEEECSSSSCCTHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCc------ceEEEEcChHHHHHHHHHhC-------------CCCEEEEecCCCCccHHHHHH
Confidence 45677888889999998421 15799999999998887754 2234666666 46676667
Q ss_pred HHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceE-EEeeccCCccc-cccChhHHHHHHHHhCCeEEcc
Q 010125 209 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLF-LCATIGTTAIT-AVDPLKPLCDVAKQFGIWVHVD 286 (517)
Q Consensus 209 a~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~-vv~t~gtt~~G-~idpl~eI~~i~~~~gi~lhvD 286 (517)
++..|+ +++.+ +|+++|+++ +++ +.+ |+++.+++++| ...|+++|+++|++||+++|+|
T Consensus 118 ~~~~g~---~~~~v---------~d~~~l~~~-~~~------~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~D 178 (374)
T 2aeu_A 118 CKIVNA---KYFES---------DKVGEILNK-IDK------DTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVD 178 (374)
T ss_dssp HHHTTC---EEEEE---------SCHHHHHTT-CCT------TEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHcCc---EEEEe---------CCHHHHHhc-CCC------ccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEE
Confidence 888898 88777 278888876 322 346 78888999999 8999999999999999999999
Q ss_pred cccccccccCccccc-cccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCccccCCccccccccccCCCcc
Q 010125 287 AAYAGSACICPEFRH-FIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQ 365 (517)
Q Consensus 287 aA~g~~~~~~~~~~~-~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~ 365 (517)
++|+.+.. .+.... ... .++|.++.++||++++| ++|+++.++. .. +.+.....+. +
T Consensus 179 e~~~~~~~-~~~~~~~~~~--~~~di~~~S~sK~l~g~-~~G~~~~~~~-~~-~~l~~~~~~~----------------~ 236 (374)
T 2aeu_A 179 DASGARVR-LLFNQPPALK--LGADLVVTSTDKLMEGP-RGGLLAGKKE-LV-DKIYIEGTKF----------------G 236 (374)
T ss_dssp CTTHHHHH-HHTTCCCHHH--HTCSEEEEETTSSSSSC-SCEEEEEEHH-HH-HHHHHHHHTT----------------T
T ss_pred CCcccccc-cccccCCccc--cCCcEEEecCcccccCc-ceEEEEECHH-HH-HHHHHhhccc----------------c
Confidence 99976641 011010 111 15799999999998764 7898877643 22 2221100000 0
Q ss_pred ccCCCCCCchHHH---HHHHHhcHHHHHHHHHHHHHH----HHHHHHHHhcC---CCeEEecCCCeeEEEEEecCCCcch
Q 010125 366 ITLSRRFRSLKLW---FVIRNYGVANLRHFLRSHVNM----AKLFERLVSGD---KRFEIVFPCHFAVVCFRVSPSPVLM 435 (517)
Q Consensus 366 ~~~sr~~~al~~~---~~l~~~g~~g~~~~i~~~~~~----a~~l~~~l~~~---~~~~l~~~~~~~~v~f~~~~~~~~~ 435 (517)
.....+..+ .+++.+..+.+++..++...+ .+.+.+.|... +++.+...+. +.+.++.....
T Consensus 237 ----~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~-g~~~~~~~~~~--- 308 (374)
T 2aeu_A 237 ----LEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPT-GFVIKRVYKDD--- 308 (374)
T ss_dssp ----CBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSS-EEEEEEEESSH---
T ss_pred ----CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCc-eEEEEeecccc---
Confidence 011223333 334433222333333333333 35555555544 3566543444 33333332210
Q ss_pred hhhhhhhhccccchHHHHHHHHHHHH-HHHHhcCcEEEeeeeE-CCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 010125 436 DKLKTKYVNCLLSEEEQINEFNRELL-ESINASGKAYMTHAVL-GGIYAIRFATGATLTEKRHVVVAWTVVQQHLEAFQ 512 (517)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~g~~~~~~~~~-~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l~ 512 (517)
...... ..++. +.+.+.|+++.++..+ .+..++|++++....++.+++++.+.|+++.+++.
T Consensus 309 --------------~~~~~~-~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~~~ 372 (374)
T 2aeu_A 309 --------------TINIKK-LIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIKMAF 372 (374)
T ss_dssp --------------HHHHHH-HHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHHT
T ss_pred --------------cccccc-hHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 000001 11233 3344568765443332 23568999997655555569999999988887764
No 192
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.80 E-value=2.9e-18 Score=171.97 Aligned_cols=296 Identities=13% Similarity=0.070 Sum_probs=193.1
Q ss_pred HHHHHHHHHhccc-ccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHh
Q 010125 107 AGFLGEMLSSGFN-IVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKI 185 (517)
Q Consensus 107 ~~~~~~~l~~~~n-~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~ 185 (517)
+..+.+.+...+. .....|.. +...++++.+.+|+.+. ..+++ ..++|+|+++++..++.+.
T Consensus 34 ~~~v~~a~~~~~~~~~~~~y~~-~~~~~lr~~la~~~~~~-~~~~~-------~v~~~~G~~~al~~~~~~~-------- 96 (335)
T 1uu1_A 34 PEDLVDEVFRRLNSDALRIYYD-SPDEELIEKILSYLDTD-FLSKN-------NVSVGNGADEIIYVMMLMF-------- 96 (335)
T ss_dssp CHHHHHHHHHTCCGGGGGSCCC-SSCHHHHHHHHHHHTCS-SCCGG-------GEEEESSHHHHHHHHHHHS--------
T ss_pred CHHHHHHHHHHhhhhhhhcCCC-CchHHHHHHHHHHcCCC-CCCHH-------HEEEcCChHHHHHHHHHHh--------
Confidence 3445566666552 22334432 34556666555554432 15443 6899999999988776543
Q ss_pred cccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcccc
Q 010125 186 GRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITA 265 (517)
Q Consensus 186 g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~ 265 (517)
++.|++. ++|.++..+++..|. +++.+|+++ ++.+|+++| ++ +.+|+++.++|++|.
T Consensus 97 ------gd~Vl~~-p~y~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l-----~~------~~~v~l~~p~nptG~ 153 (335)
T 1uu1_A 97 ------DRSVFFP-PTYSCYRIFAKAVGA---KFLEVPLTK--DLRIPEVNV-----GE------GDVVFIPNPNNPTGH 153 (335)
T ss_dssp ------SEEEECS-SSCHHHHHHHHHHTC---EEEECCCCT--TSCCCCCCC-----CT------TEEEEEESSCTTTCC
T ss_pred ------CCcEEEC-CCcHHHHHHHHHcCC---eEEEeccCC--CCCCCHHHc-----CC------CCEEEEeCCCCCCCC
Confidence 2458888 999999999999999 999999864 467888777 22 347777889999999
Q ss_pred ccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccC-CCCcceEEEEeCchhHHhhhcC-
Q 010125 266 VDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFF-ATLDCCCLWVKDPRALVSSLST- 343 (517)
Q Consensus 266 idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~-~p~~~g~l~~~~~~~~~~~~~~- 343 (517)
+-|.+++.++++.+| ++++|++|+.+... .....+. ....+.+..++||+++ .+..+|+++++ ++.. +.+..
T Consensus 154 ~~~~~~l~~l~~~~~-~li~De~~~~~~~~--~~~~~~~-~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~-~~l~~~ 227 (335)
T 1uu1_A 154 VFEREEIERILKTGA-FVALDEAYYEFHGE--SYVDFLK-KYENLAVIRTFSKAFSLAAQRVGYVVAS-EKFI-DAYNRV 227 (335)
T ss_dssp CCCHHHHHHHHHTTC-EEEEECTTHHHHCC--CCGGGGG-TCSSEEEEEESTTTTTCGGGCCEEEEEC-HHHH-HHHHHH
T ss_pred CCCHHHHHHHHHhCC-EEEEECcchhhcch--hHHHHhh-hCCCEEEEecchhhcCCcccCeEEEEeC-HHHH-HHHHHh
Confidence 999999999999999 99999999864321 1111111 1245678889999997 44568999884 3332 22211
Q ss_pred CccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCee
Q 010125 344 NPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYG-VANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFA 422 (517)
Q Consensus 344 ~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g-~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~~~ 422 (517)
... + ....+..+++...+. .+.++++.++..++++++.+.|++. ++++. ++..+
T Consensus 228 ~~~-----------------~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~ 282 (335)
T 1uu1_A 228 RLP-----------------F------NVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM-GYRIT-DSRGN 282 (335)
T ss_dssp SCT-----------------T------CSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCCSS
T ss_pred cCC-----------------C------CcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CcEEc-CCCCe
Confidence 100 0 112233333333332 2467788888899999999999887 67653 44555
Q ss_pred EEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHH
Q 010125 423 VVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWT 502 (517)
Q Consensus 423 ~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~ 502 (517)
++.+.+.. ....++.+.|.++|+...+ +..++|++++ +++|++++++
T Consensus 283 ~~~~~~~~------------------------~~~~~~~~~l~~~gi~v~~-----~~~~iRis~~----~~~~i~~~~~ 329 (335)
T 1uu1_A 283 FVFVFMEK------------------------EEKERLLEHLRTKNVAVRS-----FREGVRITIG----KREENDMILR 329 (335)
T ss_dssp EEEEECCT------------------------HHHHHHHHHHHHHTEEEEE-----ETTEEEEECC----CHHHHHHHHH
T ss_pred EEEEECCC------------------------CCHHHHHHHHHHCCEEEEE-----CCCeEEEEeC----CHHHHHHHHH
Confidence 66655431 1134566777777865433 2357999984 3568999998
Q ss_pred HHHH
Q 010125 503 VVQQ 506 (517)
Q Consensus 503 ~l~~ 506 (517)
+|++
T Consensus 330 ~l~~ 333 (335)
T 1uu1_A 330 ELEV 333 (335)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 8865
No 193
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=99.80 E-value=1e-17 Score=173.79 Aligned_cols=308 Identities=10% Similarity=-0.034 Sum_probs=182.9
Q ss_pred HHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCC-CchHHHHHHHHcC
Q 010125 135 ENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQ-THCALQKAAQIVG 213 (517)
Q Consensus 135 E~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~-~H~s~~kaa~~~G 213 (517)
..++.+.++++++.+.+ .++||+|||+|+..++.+++... +..| .++..|++.+. .|.+...++...|
T Consensus 88 ~~~l~~~la~~~~~~~~-------~v~~~~ggtea~~~ai~~~~~~~-~~~g---~~~~~vi~~~~~yh~~~~~~~~~~~ 156 (429)
T 1s0a_A 88 AIELCRKLVAMTPQPLE-------CVFLADSGSVAVEVAMKMALQYW-QAKG---EARQRFLTFRNGYHGDTFGAMSVCD 156 (429)
T ss_dssp HHHHHHHHHHHSCTTCC-------EEEEESSHHHHHHHHHHHHHHHH-HHHT---CCCCEEEEETTCCCCSSHHHHTTSC
T ss_pred HHHHHHHHHHhCCCCCC-------EEEEeCCHHHHHHHHHHHHHHHh-cccC---CCCCeEEEECCCCCCCchhhhhhcC
Confidence 34555678888876544 68999999999999998776421 1111 12344555554 5554444443333
Q ss_pred CC----------CCCEEEEecCCC----CCcccCHHHHHHHHHHhHhcCCcceEEEeecc-CCccccccC----hhHHHH
Q 010125 214 ID----------VKNFRAIKTTKS----SSYGLSPDSLMAQINSDVEVGLIPLFLCATIG-TTAITAVDP----LKPLCD 274 (517)
Q Consensus 214 ~g----------~~~v~~vp~d~~----~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~g-tt~~G~idp----l~eI~~ 274 (517)
.. ...++.+|++.. ..+.+|+++|+++|++.. ..+.+|+++.. ++++|.+-| +++|++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~---~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~ 233 (429)
T 1s0a_A 157 PDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHR---HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRK 233 (429)
T ss_dssp TTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHT---TTEEEEEECSSEECTTTCEEBCTHHHHHHHH
T ss_pred CchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCC---CCEEEEEEeecccCCCCcccCCHHHHHHHHH
Confidence 10 113566766421 123689999999997521 12345666655 688998766 999999
Q ss_pred HHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCC-CcceEEEEeCchhHHhhhcCCc--cccCCc
Q 010125 275 VAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCCLWVKDPRALVSSLSTNP--EYLKNK 351 (517)
Q Consensus 275 i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p-~~~g~l~~~~~~~~~~~~~~~~--~yl~~~ 351 (517)
+|++||+++|+|++|+++............++ ..|.+++ .|+++.+ .++|++++++. .. +.+.... .+..
T Consensus 234 l~~~~~~~li~De~~~~~g~~g~~~~~~~~~~-~~d~~t~--sK~l~~G~~~iG~~~~~~~-~~-~~l~~~~~~~~~~-- 306 (429)
T 1s0a_A 234 ICDREGILLIADEIATGFGRTGKLFACEHAEI-APDILCL--GKALTGGTMTLSATLTTRE-VA-ETISNGEAGCFMH-- 306 (429)
T ss_dssp HHHHHTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEEE--CGGGGTSSSCCEEEEECHH-HH-HHHHTSTTSSCSC--
T ss_pred HHHHcCCEEEEeehhhCCcccchHHHhhhcCC-CCCEEEe--cccccCCCccceEEEeCHH-HH-HHhhcCCCccccc--
Confidence 99999999999999976432111110001122 4677764 5999877 88999988643 22 2332110 0000
Q ss_pred cccccccccCCCccccCCCCCCchHH---HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC---CCeEEecCCCeeEEE
Q 010125 352 ATESMQVVDYKDWQITLSRRFRSLKL---WFVIRNYGVANLRHFLRSHVNMAKLFERLVSGD---KRFEIVFPCHFAVVC 425 (517)
Q Consensus 352 ~~~~~~~~~~~~~~~~~sr~~~al~~---~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~---~~~~l~~~~~~~~v~ 425 (517)
..+-....+.. .++++.+..+ +..++..++++++.+.|+++ |++..+ ++..+++.
T Consensus 307 ---------------~~t~~~n~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~-~~~g~~~~ 367 (429)
T 1s0a_A 307 ---------------GPTFMGNPLACAAANASLAILESG---DWQQQVADIEVQLREQLAPARDAEMVADV-RVLGAIGV 367 (429)
T ss_dssp ---------------CCTTTTCHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHGGGGGCTTEEEE-EEETTEEE
T ss_pred ---------------CCCCCCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHhcCCCEEEE-EEeeEEEE
Confidence 00111122333 3344433222 45667777889999998774 565433 23345666
Q ss_pred EEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHH
Q 010125 426 FRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQ 505 (517)
Q Consensus 426 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~ 505 (517)
+.+.... ...++.+.|.++|+.. .+. + .++|+++ +..++++|+++++++|+
T Consensus 368 ~~~~~~~-----------------------~~~~l~~~l~~~Gi~v-~~~---~-~~iRis~-~~~~t~e~i~~~~~~l~ 418 (429)
T 1s0a_A 368 VETTHPV-----------------------NMAALQKFFVEQGVWI-RPF---G-KLIYLMP-PYIILPQQLQRLTAAVN 418 (429)
T ss_dssp EEESSCB-----------------------CHHHHHHHHHHTTEEC-CCB---T-TEEEECC-CTTCCHHHHHHHHHHHH
T ss_pred EEECCcc-----------------------cHHHHHHHHHHCCCEE-ecc---C-CEEEEEC-CCCCCHHHHHHHHHHHH
Confidence 6664310 0235666777778643 332 2 5899997 45678889999999999
Q ss_pred HHHHHH
Q 010125 506 QHLEAF 511 (517)
Q Consensus 506 ~~~~~l 511 (517)
++.+++
T Consensus 419 ~~~~~~ 424 (429)
T 1s0a_A 419 RAVQDE 424 (429)
T ss_dssp HHTSSG
T ss_pred HHHHhh
Confidence 876544
No 194
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=99.80 E-value=3e-18 Score=177.56 Aligned_cols=304 Identities=12% Similarity=0.032 Sum_probs=185.7
Q ss_pred HHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCC-eEEEeCCCCchHHHHHHH
Q 010125 132 TELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISK-LIVYGSDQTHCALQKAAQ 210 (517)
Q Consensus 132 ~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~-~~v~~s~~~H~s~~kaa~ 210 (517)
.....++.+++++++|.+ .+++++|||+|+..++.+++.....+ |.. ++ .+|+.+...|.+...++.
T Consensus 98 ~~~~~~l~~~la~~~g~~---------~v~~~~ggteA~~~al~~~~~~~~~~-~~~--g~~~vi~~~~~yh~~~~~~~~ 165 (420)
T 2pb2_A 98 NEPALRLGRKLIDATFAE---------RVLFMNSGTEANETAFKLARHYACVR-HSP--FKTKIIAFHNAFHGRSLFTVS 165 (420)
T ss_dssp CHHHHHHHHHHHHHSSCS---------EEEEESSHHHHHHHHHHHHHHHHHHH-TCT--TCCEEEEETTCCCCSSHHHHH
T ss_pred CHHHHHHHHHHHhhCCCC---------eEEEeCCHHHHHHHHHHHHHHHhhhc-cCC--CCCEEEEEeCCcCCcCHHHHH
Confidence 345566777888887732 58999999999999999887632211 211 33 344454455666666666
Q ss_pred HcCCC---------CCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcccc----ccChhHHHHHHH
Q 010125 211 IVGID---------VKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITA----VDPLKPLCDVAK 277 (517)
Q Consensus 211 ~~G~g---------~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~----idpl~eI~~i~~ 277 (517)
..|.. ...++.+|. .|+++|+++|++++ .+|+++..++++|. .+++++|.++|+
T Consensus 166 ~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~le~~i~~~~------~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~ 232 (420)
T 2pb2_A 166 VGGQPKYSDGFGPKPADIIHVPF-------NDLHAVKAVMDDHT------CAVVVEPIQGEGGVQAATPEFLKGLRDLCD 232 (420)
T ss_dssp HSSCHHHHTTSSSCCSCEEEECT-------TCHHHHHHHCCTTE------EEEEECSEETTTTSEECCHHHHHHHHHHHH
T ss_pred hcCCccccccCCCCCCCeEEecC-------CCHHHHHHHhccCc------eEEEEeCCcCCCCeecCCHHHHHHHHHHHH
Confidence 66541 012555553 28999999987533 46777776666675 378999999999
Q ss_pred HhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCccccCCccccccc
Q 010125 278 QFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQ 357 (517)
Q Consensus 278 ~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~ 357 (517)
+||+++++|++|.++............++ ..|.++ ++|+++.++.+|+++++++ +.+.+... ...
T Consensus 233 ~~gi~lI~Dev~~g~~~~g~~~~~~~~~~-~~diit--~sK~l~~G~~iG~~~~~~~--l~~~l~~~----~~~------ 297 (420)
T 2pb2_A 233 EHQALLVFDEVQCGMGRTGDLFAYMHYGV-TPDILT--SAKALGGGFPVSAMLTTQE--IASAFHVG----SHG------ 297 (420)
T ss_dssp HTTCEEEEECTTTTTTTTSSSSHHHHHTC-CCSEEE--ECGGGGTTSCCEEEEECHH--HHTTCC--------C------
T ss_pred HcCCEEEEEcCCcCcccCCcHHHHHhcCC-CCCeEE--ecccccCCCceEEEEEhHH--HHHhhcCC----CcC------
Confidence 99999999999976432111111001122 468775 5799997788999998653 32222110 000
Q ss_pred cccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC----CCeEEecCCCeeEEEEEecCCCc
Q 010125 358 VVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGD----KRFEIVFPCHFAVVCFRVSPSPV 433 (517)
Q Consensus 358 ~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~----~~~~l~~~~~~~~v~f~~~~~~~ 433 (517)
.++ .........+..+++.+.. +++.++..++++++.+.|+++ |.+..+ ++..+++.+.+....
T Consensus 298 ------~t~-~~~~~~~aa~~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~v~~~~~~- 365 (420)
T 2pb2_A 298 ------STY-GGNPLACAVAGAAFDIINT---PEVLQGIHTKRQQFVQHLQAIDEQFDIFSDI-RGMGLLIGAELKPKY- 365 (420)
T ss_dssp ------CEE-CCCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE-EEETTEEEEEECGGG-
T ss_pred ------ccc-CcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-EecceEEEEEECCCc-
Confidence 011 0111122233444554433 356677778888888888664 433322 234456677664210
Q ss_pred chhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 010125 434 LMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHLEAFQ 512 (517)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l~ 512 (517)
.....++.+.|.++|.+..+. +..++|+++ ...++++|++++++.|+++.+++.
T Consensus 366 --------------------~~~~~~l~~~l~~~Gi~v~~~----~~~~iRl~~-~~~~t~eei~~~~~~l~~~l~~~~ 419 (420)
T 2pb2_A 366 --------------------KGRARDFLYAGAEAGVMVLNA----GADVMRFAP-SLVVEEADIHEGMQRFAQAVGKVV 419 (420)
T ss_dssp --------------------TTCHHHHHHHHHHTTEECEES----STTEEEECC-CTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------hHHHHHHHHHHHHCCCEEEeC----CCCEEEEEC-CCCCCHHHHHHHHHHHHHHHHHHh
Confidence 001345677777778654322 246899997 456788999999999999887654
No 195
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.80 E-value=3.1e-18 Score=176.45 Aligned_cols=216 Identities=13% Similarity=0.113 Sum_probs=147.2
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHH
Q 010125 127 SSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQ 206 (517)
Q Consensus 127 ~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~ 206 (517)
..|...++|+.+ ++++|.+ ..+++++|++|+..++. ... +++.|++++..|.+..
T Consensus 65 ~~p~~~~l~~~l----a~~~g~~---------~~i~~~sG~~ai~~~~~-l~~-----------~gd~Vl~~~~~y~~~~ 119 (403)
T 3cog_A 65 GNPTRNCLEKAV----AALDGAK---------YCLAFASGLAATVTITH-LLK-----------AGDQIICMDDVYGGTN 119 (403)
T ss_dssp -CHHHHHHHHHH----HHHHTCS---------EEEEESCHHHHHHHHHT-TSC-----------TTCEEEEESSCCHHHH
T ss_pred CCchHHHHHHHH----HHHhCCC---------cEEEECCHHHHHHHHHH-HhC-----------CCCEEEEeCCCcchHH
Confidence 345666666554 4555654 23555666788876665 311 5567888889998755
Q ss_pred HH----HHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhC-C
Q 010125 207 KA----AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFG-I 281 (517)
Q Consensus 207 ka----a~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~g-i 281 (517)
.. ++..|+ +++.+|.+ |+++|+++|++++ .+|+++.++|++|.+.|+++|+++|++|| +
T Consensus 120 ~~~~~~~~~~G~---~v~~v~~~-------d~~~l~~~i~~~t------~~v~~~~p~nptG~~~~l~~i~~la~~~g~~ 183 (403)
T 3cog_A 120 RYFRQVASEFGL---KISFVDCS-------KIKLLEAAITPET------KLVWIETPTNPTQKVIDIEGCAHIVHKHGDI 183 (403)
T ss_dssp HHHHHTGGGGTC---EEEEECTT-------SHHHHHHHCCTTE------EEEEEESSCTTTCCCCCHHHHHHHHTSSSCC
T ss_pred HHHHHHHHHcCC---EEEEECCC-------CHHHHHHhcCcCC------eEEEEECCCCCCCeeeCHHHHHHHHHHcCCC
Confidence 54 356788 88888863 7899999987544 37888999999999999999999999999 9
Q ss_pred eEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCc--ceEEEEeCchhHHhhhcCCccccCCccccccccc
Q 010125 282 WVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCCLWVKDPRALVSSLSTNPEYLKNKATESMQVV 359 (517)
Q Consensus 282 ~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~--~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~ 359 (517)
++++|++|+.+....+ . . .++|.++.++||+++.|.+ +|+++++++.... .+.. +...
T Consensus 184 ~livD~~~~~~~~~~~-~----~--~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~-~l~~---~~~~--------- 243 (403)
T 3cog_A 184 ILVVDNTFMSPYFQRP-L----A--LGADISMYSATKYMNGHSDVVMGLVSVNCESLHN-RLRF---LQNS--------- 243 (403)
T ss_dssp EEEEECTTTCTTTCCT-T----T--TTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHH-HHHH---HHHH---------
T ss_pred EEEEECCCcccccCCc-c----c--cCCeEEEEcChhhccCCCCCeEEEEEECcHHHHH-HHHH---HHHh---------
Confidence 9999999988754221 1 1 2689999999999998865 5888887654322 2210 0000
Q ss_pred cCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 010125 360 DYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRF 413 (517)
Q Consensus 360 ~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~ 413 (517)
+ +-....+..|++++.+ +.+..++++..+++..+.+.+++.+.+
T Consensus 244 ----~----g~~~~~~~~~~~~~~l--~~l~~r~~~~~~n~~~l~~~l~~~~~v 287 (403)
T 3cog_A 244 ----L----GAVPSPIDCYLCNRGL--KTLHVRMEKHFKNGMAVAQFLESNPWV 287 (403)
T ss_dssp ----H----CCCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred ----c----CCCCCHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 0 0011335566666544 345666777777888888888766443
No 196
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.80 E-value=1.1e-17 Score=173.86 Aligned_cols=306 Identities=8% Similarity=-0.014 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCC-CchHHHHHHHH
Q 010125 133 ELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQ-THCALQKAAQI 211 (517)
Q Consensus 133 ~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~-~H~s~~kaa~~ 211 (517)
....++.+.+++++|.+ ..++++|||+||..|+.+++.......|.. .++..|++.+. .|.+...++..
T Consensus 107 ~~~~~l~~~la~~~g~~---------~v~~~~sGseA~~~al~~a~~~~~~~~g~~-~gr~~vi~~~~~yhg~~~~~~~~ 176 (433)
T 1z7d_A 107 VPLGICERYLTNLLGYD---------KVLMMNTGAEANETAYKLCRKWGYEVKKIP-ENMAKIVVCKNNFSGRTLGCISA 176 (433)
T ss_dssp HHHHHHHHHHHHHHTCS---------EEEEESSHHHHHHHHHHHHHHHHHHTSCCC-TTCCEEEEETTC-----------
T ss_pred HHHHHHHHHHHhhcCCC---------eEEEeCCHHHHHHHHHHHHHHHhhhccCCC-CCCCeEEEEeCCcCCcchhhhcc
Confidence 34455556677777632 579999999999999998875321111111 12244544444 45555555554
Q ss_pred cCC-------C--CCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcccccc----ChhHHHHHHHH
Q 010125 212 VGI-------D--VKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVD----PLKPLCDVAKQ 278 (517)
Q Consensus 212 ~G~-------g--~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~id----pl~eI~~i~~~ 278 (517)
.|. + ...++.+|. .|+++|+++|+.. .+.+|+++...+++|.+- ++++|.++|++
T Consensus 177 ~g~~~~~~~~~p~~~~v~~~~~-------~d~~~le~~l~~~-----~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~ 244 (433)
T 1z7d_A 177 STTKKCTSNFGPFAPQFSKVPY-------DDLEALEEELKDP-----NVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKK 244 (433)
T ss_dssp ---------------CEEEECT-------TCHHHHHHHHTST-----TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHH
T ss_pred cCCccccccCCCCCCCeEEeCC-------CCHHHHHHHhCCC-----CEEEEEEECCCCCCCccCCCHHHHHHHHHHHHH
Confidence 441 0 014555553 2899999999521 134666665566688764 79999999999
Q ss_pred hCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCC-CcceEEEEeCchhHHhhhcCCccccCCccccccc
Q 010125 279 FGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQ 357 (517)
Q Consensus 279 ~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p-~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~ 357 (517)
||+++++|++|.++............++ ..|.+ +++|+++.+ +..|++++++. +.+.+.. .. .
T Consensus 245 ~g~llI~DEv~~g~g~~g~~~~~~~~~~-~~di~--t~sK~l~~G~~~~G~v~~~~~--~~~~l~~---~~-~------- 308 (433)
T 1z7d_A 245 YNVLFVADEVQTGLGRTGKLLCVHHYNV-KPDVI--LLGKALSGGHYPISAVLANDD--IMLVIKP---GE-H------- 308 (433)
T ss_dssp TTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEE--EECGGGGTTSSCCEEEEECHH--HHTTCCT---TC-C-------
T ss_pred cCCEEEEecCccCCCcCCcchhhHhcCC-CCCEE--EECccccCCCCCeEEEEECHH--HHhhhcc---cc-c-------
Confidence 9999999999976432111111001122 46776 457999876 57999988643 2222211 00 0
Q ss_pred cccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC----CCeEEecCCCeeEEEEEecCCCc
Q 010125 358 VVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGD----KRFEIVFPCHFAVVCFRVSPSPV 433 (517)
Q Consensus 358 ~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~----~~~~l~~~~~~~~v~f~~~~~~~ 433 (517)
..++ .+.........++++.+..+ ++.++..++++++.+.|+++ |.+..+ ++..+++.+.+....
T Consensus 309 -----~~t~-~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~-~~~g~~~~i~~~~~~- 377 (433)
T 1z7d_A 309 -----GSTY-GGNPLAASICVEALNVLINE---KLCENAEKLGGPFLENLKRELKDSKIVRDV-RGKGLLCAIEFKNEL- 377 (433)
T ss_dssp -----CCTT-TTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHTTCTTEEEE-EEETTEEEEEECTTT-
T ss_pred -----cccC-CCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EeeeeEEEEEEccCh-
Confidence 0011 11111122333444443322 45667777888888888653 333222 234456667664320
Q ss_pred chhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHHh
Q 010125 434 LMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHLEAFQS 513 (517)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l~~ 513 (517)
....++.+.|.++|++. .+. +..++|+++ +..++++|+++++++|+++.+++..
T Consensus 378 ---------------------~~~~~~~~~l~~~Gv~v-~~~---~~~~iRi~~-~~~~t~e~i~~~l~~l~~~l~~~~~ 431 (433)
T 1z7d_A 378 ---------------------VNVLDICLKLKENGLIT-RDV---HDKTIRLTP-PLCITKEQLDECTEIIVKTVKFFDE 431 (433)
T ss_dssp ---------------------CCHHHHHHHHHHTTEEC-CEE---TTTEEEECC-CTTCCHHHHHHHHHHHHHHHHHHC-
T ss_pred ---------------------hHHHHHHHHHHHCCeEE-ecC---CCCEEEEEC-CcCCCHHHHHHHHHHHHHHHHHHHh
Confidence 01245677777788654 332 346899987 4567889999999999998877644
No 197
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=99.80 E-value=1.7e-17 Score=171.71 Aligned_cols=300 Identities=11% Similarity=-0.017 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHHHcCCC-cccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHH
Q 010125 133 ELENIVMDWLGQMLKLP-KSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQI 211 (517)
Q Consensus 133 ~lE~~v~~~l~~l~g~~-~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~ 211 (517)
....++.+.+++++|.+ ++ ..++|+||++|+..++.+++... ++.+|+.....|.+...++..
T Consensus 86 ~~~~~l~~~la~~~~~~~~~-------~v~~~~gg~ea~~~ai~~~~~~~---------~~~vi~~~p~yh~~~~~~~~~ 149 (419)
T 2eo5_A 86 IPQLELAKKLVTYSPGNFQK-------KVFFSNSGTEAIEASIKVVKNTG---------RKYIIAFLGGFHGRTFGSISL 149 (419)
T ss_dssp HHHHHHHHHHHHHSSCSSCE-------EEEEESSHHHHHHHHHHHHHTTS---------CCEEEEETTCCCCSSHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcCC-------EEEEeCchHHHHHHHHHHHHHhh---------CCcEEEECCCcCCCCHhhHhh
Confidence 34455667888888876 43 68999999999999998775420 233444444456555555544
Q ss_pred cCC------C----CCCEEEEecCCCCCcc----------------cCHHHHH-HHHHHhHhcCCcceEEEeeccCCccc
Q 010125 212 VGI------D----VKNFRAIKTTKSSSYG----------------LSPDSLM-AQINSDVEVGLIPLFLCATIGTTAIT 264 (517)
Q Consensus 212 ~G~------g----~~~v~~vp~d~~~~~~----------------~d~~~Le-~~i~~~~~~g~~p~~vv~t~gtt~~G 264 (517)
.|. + ...++.+|.+. +++ +|+++|+ ++|++.. ....+.+|+++..++++|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~-~~~~~~~vi~~p~~~~tG 226 (419)
T 2eo5_A 150 TASKAVQRSIVGPFMPGVIHVPYPN--PYRNPWHINGYENPSELVNRVIEFIEDYIFVNLV-PPEEVAGIFFEPIQGEGG 226 (419)
T ss_dssp CCSCGGGGCSSCCCCTTEEEECCCC--SSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTC-CGGGEEEEEECSSBTTTT
T ss_pred cCCccccccccCCCCCCCEEECCCc--cccccccccccccchhhHHHHHHHHHHHHHhhcc-CCCCEEEEEEeCccCCCC
Confidence 332 0 12678888753 232 4788999 8887420 001233565555556689
Q ss_pred cccC----hhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCC-CcceEEEEeCchhHHh
Q 010125 265 AVDP----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCCLWVKDPRALVS 339 (517)
Q Consensus 265 ~idp----l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p-~~~g~l~~~~~~~~~~ 339 (517)
.+-| +++|+++|++||+++|+|++|.++............++ ..|.++ +.|.++.+ .++|+++.++. . .
T Consensus 227 ~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~-~~d~~t--~sK~~~~G~~riG~~~~~~~-~-~- 300 (419)
T 2eo5_A 227 YVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNT-VPDVIT--LAKALGGGIMPIGATIFRKD-L-D- 300 (419)
T ss_dssp SBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEE--ECGGGGTTTSCCEEEEEEGG-G-C-
T ss_pred CccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCC-CCCEEE--ecccccCCccceEEEEEchH-h-h-
Confidence 7666 99999999999999999999986532211111001122 456664 56999877 88999988654 1 1
Q ss_pred hhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC
Q 010125 340 SLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPC 419 (517)
Q Consensus 340 ~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~ 419 (517)
.+. .... .+-....+...+++..+. .+++..++..+++++|.+.|+++ +..+ ++
T Consensus 301 ~~~---~~~~------------------~t~~~n~~~~~aa~aal~--~~~~~~~~~~~~~~~l~~~L~~~--~~~~-~~ 354 (419)
T 2eo5_A 301 FKP---GMHS------------------NTFGGNALACAIGSKVID--IVKDLLPHVNEIGKIFAEELQGL--ADDV-RG 354 (419)
T ss_dssp CC---------------------------CCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTS--SSEE-EE
T ss_pred cCC---cccC------------------CCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHh--hhhe-Ee
Confidence 120 0000 000112333333333331 12236778888999999999875 2222 33
Q ss_pred CeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHH
Q 010125 420 HFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVV 499 (517)
Q Consensus 420 ~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~ 499 (517)
..+++.+.+.+. ..... +.+.|.++|+++... +..++|+++ +..++++++++
T Consensus 355 ~g~~~~i~~~~~----------------------~~~~~-~~~~l~~~Gv~v~~~----~~~~lRis~-~~~~t~e~i~~ 406 (419)
T 2eo5_A 355 IGLAWGLEYNEK----------------------KVRDR-IIGESFKRGLLLLPA----GRSAIRVIP-PLVISEEEAKQ 406 (419)
T ss_dssp ETTEEEEECSCH----------------------HHHHH-HHHHHHHTTEECEEE----TTTEEEECC-CTTCCHHHHHH
T ss_pred eeEEEEEEEecC----------------------ccHHH-HHHHHHHCCCEEecC----CCCEEEEEC-CCCCCHHHHHH
Confidence 455666665331 11234 777777788654332 245899987 55778889999
Q ss_pred HHHHHHHHHHHH
Q 010125 500 AWTVVQQHLEAF 511 (517)
Q Consensus 500 l~~~l~~~~~~l 511 (517)
++++|+++.+++
T Consensus 407 ~l~~l~~~l~~~ 418 (419)
T 2eo5_A 407 GLDILKKVIKVV 418 (419)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 999999887653
No 198
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=99.80 E-value=1.9e-17 Score=171.81 Aligned_cols=330 Identities=10% Similarity=0.029 Sum_probs=178.6
Q ss_pred hHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHH
Q 010125 131 ATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQ 210 (517)
Q Consensus 131 ~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~ 210 (517)
......++.+|+++.++.+.+ ..++|+||++|+..++.+++.....+ |.. ++..|++.+.+|+.....+.
T Consensus 70 ~~~~~~~l~~~la~~~~~~~~-------~v~~~~gg~ea~~~al~~~~~~~~~~-g~~--~~~~vi~~~~~yhg~~~~~~ 139 (430)
T 3i4j_A 70 SSDVLEEYAGRLARFVGLPTF-------RFWAVSGGSEATESAVKLARQYHVER-GEP--GRFKVITRVPSYHGASLGSL 139 (430)
T ss_dssp EEHHHHHHHHHHHHHTTCTTC-------EEEEESSHHHHHHHHHHHHHHHHHHT-TCT--TCCEEEEETTC---------
T ss_pred CCHHHHHHHHHHHHhCCCCCC-------EEEEeCcHHHHHHHHHHHHHHHHHhc-CCC--CCcEEEEEeCCcCCCCcccc
Confidence 445666778899999887654 68999999999999999887643221 221 34455555565554443332
Q ss_pred HcCC-CC---------C--CEEEEecCCC-CCcccCHHHHHHHHHHhHhcCCcceEEEeeccCC-ccccccC----hhHH
Q 010125 211 IVGI-DV---------K--NFRAIKTTKS-SSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTT-AITAVDP----LKPL 272 (517)
Q Consensus 211 ~~G~-g~---------~--~v~~vp~d~~-~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt-~~G~idp----l~eI 272 (517)
.++. .. . .+..+|.+.. ..+..|+++|+++|++... ..+.+|+++..++ ++|.+-+ +++|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~--~~~~~vi~~p~~~~~~G~~~~~~~~l~~l 217 (430)
T 3i4j_A 140 AASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGP--ETVAAFMAEPVVGASDAALAPAPGYYERV 217 (430)
T ss_dssp ----------------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCG--GGEEEEEECSSCCGGGTTCCCCTTHHHHH
T ss_pred cccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCC--CCEEEEEEcCcccCcCCcccCCHHHHHHH
Confidence 2221 00 0 3344554311 0134678999999975210 1234666666666 8888777 9999
Q ss_pred HHHHHHhCCeEEcccccccccccCcccccccc-CCCCCCeeeeccccccCCC-CcceEEEEeCchhHHhhhcCCc-cccC
Q 010125 273 CDVAKQFGIWVHVDAAYAGSACICPEFRHFID-GVEGADSFSLNAHKWFFAT-LDCCCLWVKDPRALVSSLSTNP-EYLK 349 (517)
Q Consensus 273 ~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~-g~~~aDsi~~~~hK~l~~p-~~~g~l~~~~~~~~~~~~~~~~-~yl~ 349 (517)
+++|++||+++|+|++|.++............ ++ ..|.+++ .|.++.. +..|+++.+ ++. .+.+.... .+..
T Consensus 218 ~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~~~~~-~~di~t~--sK~l~~G~~r~G~~~~~-~~i-~~~~~~~~~~~~~ 292 (430)
T 3i4j_A 218 RDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGV-TPDIAVL--GKGLAAGYAPLAGLLAA-PQV-YETVMGGSGAFMH 292 (430)
T ss_dssp HHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTTC-CCSEEEE--CGGGTTTSSCCEEEEEC-HHH-HHHHHHTTCBCCC
T ss_pred HHHHHHcCCEEEEechhhCCCcccchhhhhhhcCC-CCcEEEE--cccccCCccccEEEEEC-HHH-HHHHhccCCcccc
Confidence 99999999999999999865332211110001 22 3566664 5999876 668888874 332 22332111 1111
Q ss_pred CccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHh----cCCCeEEecCCCeeEEE
Q 010125 350 NKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVS----GDKRFEIVFPCHFAVVC 425 (517)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~----~~~~~~l~~~~~~~~v~ 425 (517)
. .+-....+...+++..+..-.-++++++..++.+++++.|+ +.|.+..+ ++..+++.
T Consensus 293 ~-----------------~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~ 354 (430)
T 3i4j_A 293 G-----------------FTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQV-RGTGLLLG 354 (430)
T ss_dssp C-----------------CTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEE
T ss_pred c-----------------CCCCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEE
Confidence 0 01111333333333333110012344455555555555543 45666554 34455666
Q ss_pred EEecCCCcchhhhhhhhhccccchHHHH-HHHHHHHHHHHHhcCcEEEeee-eE--CCEeEEEEEecCCCCcHHHHHHHH
Q 010125 426 FRVSPSPVLMDKLKTKYVNCLLSEEEQI-NEFNRELLESINASGKAYMTHA-VL--GGIYAIRFATGATLTEKRHVVVAW 501 (517)
Q Consensus 426 f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~g~~~~~~~-~~--~g~~~lR~~~~~~~t~~~di~~l~ 501 (517)
+.+..... ..... .....++.+.+.++|+++.+.. .. .+..++|+++ ....+++++++++
T Consensus 355 ~~~~~~~~---------------~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~iRi~~-~~~~t~e~i~~~l 418 (430)
T 3i4j_A 355 VVLGDLAT---------------GQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGP-PLSITAAEVDGLL 418 (430)
T ss_dssp EEEC---------------------------CHHHHHHHHHHTTEECC-----------CEEEECC-CTTCCHHHHHHHH
T ss_pred EEeccccc---------------cCCCccHHHHHHHHHHHHhCCCEEEecccccCCCCCCEEEEEC-CCCCCHHHHHHHH
Confidence 66642100 00000 0113567778888887654331 11 1356899997 4567888999999
Q ss_pred HHHHHHHHHH
Q 010125 502 TVVQQHLEAF 511 (517)
Q Consensus 502 ~~l~~~~~~l 511 (517)
++|+++.+++
T Consensus 419 ~~l~~~l~~~ 428 (430)
T 3i4j_A 419 ALLAGALEDV 428 (430)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 199
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.79 E-value=4e-18 Score=175.28 Aligned_cols=233 Identities=14% Similarity=0.131 Sum_probs=161.7
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHH
Q 010125 127 SSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQ 206 (517)
Q Consensus 127 ~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~ 206 (517)
..|...++|+ .++++.|.+ ..+++++|++|+..+ .... .+++.|+++...|.+..
T Consensus 65 ~~p~~~~l~~----~la~l~g~~---------~~~~~~sG~~Ai~~~-~~l~-----------~~gd~Vi~~~~~y~~~~ 119 (400)
T 3nmy_A 65 HNPTRFAYER----CVAALEGGT---------RAFAFASGMAATSTV-MELL-----------DAGSHVVAMDDLYGGTF 119 (400)
T ss_dssp CCHHHHHHHH----HHHHHHTCS---------EEEEESSHHHHHHHH-HTTS-----------CTTCEEEEESSCCHHHH
T ss_pred CCHHHHHHHH----HHHHHhCCC---------CEEEecCHHHHHHHH-HHHc-----------CCCCEEEEeCCCchHHH
Confidence 3455555554 466677754 357778888887653 2211 15567888889998666
Q ss_pred HHHH-----HcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCC
Q 010125 207 KAAQ-----IVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGI 281 (517)
Q Consensus 207 kaa~-----~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi 281 (517)
..+. ..|+ +++.++.+ |+++|+++|++++ .+|++..+++++|.+.|+++|+++|++||+
T Consensus 120 ~~~~~~~~~~~g~---~~~~v~~~-------d~~~l~~~i~~~~------~~v~~e~~~np~G~~~~l~~i~~la~~~g~ 183 (400)
T 3nmy_A 120 RLFERVRRRTAGL---DFSFVDLT-------DPAAFKAAIRADT------KMVWIETPTNPMLKLVDIAAIAVIARKHGL 183 (400)
T ss_dssp HHHHHTHHHHHCC---EEEEECTT-------SHHHHHHHCCTTE------EEEEEESSCTTTCCCCCHHHHHHHHHHTTC
T ss_pred HHHHHhhHhhcCe---EEEEECCC-------CHHHHHHHhccCC------CEEEEECCCCCCCeeecHHHHHHHHHHcCC
Confidence 5543 3588 88888753 8999999987644 478889999999999999999999999999
Q ss_pred eEEcccccccccccCccccccccCCCCCCeeeeccccccCCCC--cce-EEEEeCchhHHhhhcCCccccCCcccccccc
Q 010125 282 WVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATL--DCC-CLWVKDPRALVSSLSTNPEYLKNKATESMQV 358 (517)
Q Consensus 282 ~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~--~~g-~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~ 358 (517)
++++|++|+.+....+. . .++|.++.++||+++.|. -.| +++++++.... .+.....+
T Consensus 184 ~livDe~~~~~~~~~~~--~-----~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~-~l~~~~~~----------- 244 (400)
T 3nmy_A 184 LTVVDNTFASPMLQRPL--S-----LGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAE-QMAFLQNS----------- 244 (400)
T ss_dssp EEEEECTTTHHHHCCGG--G-----GTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHH-HHHHHHHH-----------
T ss_pred EEEEECCCcccccCChh--h-----cCCcEEEecCccccCCCCCcceeEEEEeCCHHHHH-HHHHHHHh-----------
Confidence 99999999865543221 1 169999999999998772 245 45555554322 22110000
Q ss_pred ccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCC-----------------e
Q 010125 359 VDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCH-----------------F 421 (517)
Q Consensus 359 ~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~-----------------~ 421 (517)
.+.....+..|.+++. .+.+..++++..++++++.+.|++.|.++-+..|. .
T Consensus 245 ---------~g~~~~~~~a~~~l~~--l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G 313 (400)
T 3nmy_A 245 ---------IGGVQGPFDSFLALRG--LKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFG 313 (400)
T ss_dssp ---------HCCBCCHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCC
T ss_pred ---------cCCCCCHHHHHHHHHh--HhHHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCC
Confidence 1112245667777764 46678889999999999999999999887553332 3
Q ss_pred eEEEEEecC
Q 010125 422 AVVCFRVSP 430 (517)
Q Consensus 422 ~~v~f~~~~ 430 (517)
.+++|.+.+
T Consensus 314 ~~~~~~l~~ 322 (400)
T 3nmy_A 314 GIVSIVLKG 322 (400)
T ss_dssp SEEEEEETT
T ss_pred ceEEEEeCC
Confidence 578888854
No 200
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.79 E-value=3.8e-18 Score=175.93 Aligned_cols=352 Identities=13% Similarity=0.038 Sum_probs=208.3
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCccceeCCCCCChHHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCC--c
Q 010125 73 METILQDVQQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLP--K 150 (517)
Q Consensus 73 ~~~il~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~--~ 150 (517)
.-.+.+.+.+.-.+...+.....|+++...+. +.+.+..........|...++..++++++++|+...-+.+ +
T Consensus 28 i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~-----v~~a~~~a~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~ 102 (409)
T 4eu1_A 28 ILGLGQDFRMDPAKRKVNLSIGVYRDDADQPF-----VLECVKQATLGTNMDYAPVTGIASFVEEAQKLCFGPTCAALRD 102 (409)
T ss_dssp HHHHHHHHHHCCCSSCEECCCSSCCCTTSCCC-----CCHHHHTCCCCSCCCCCCTTCCHHHHHHHHHHHHCSSCHHHHT
T ss_pred HHHHHHHHhhCCCcCceeeeeeEEECCCCCEe-----ecHHHHhcCccccccCCCCCCcHHHHHHHHHHHcCCCchhhcc
Confidence 34555555554334444444433434332221 2233444444445567666777889999888884221111 2
Q ss_pred ccccCCCCce--EEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCC
Q 010125 151 SFLFSGNGGG--VIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSS 228 (517)
Q Consensus 151 ~~~~~~~~~g--~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~ 228 (517)
+ .. ..|.||+.|+..+....+.. ..+++.|++.+++|.++..+++..|+ +++.+|++.++
T Consensus 103 ~-------~i~~~~~~~g~ga~~~~~~~~~~~--------~~~gd~Vlv~~p~y~~~~~~~~~~g~---~~~~~~~~~~~ 164 (409)
T 4eu1_A 103 G-------RIASCQTLGGTGALRIGGDLLNRF--------VANCNRIYGPDVGYPNHESIFAKAGM---ELTPYSYYDPA 164 (409)
T ss_dssp T-------CEEEEEESHHHHHHHHHHHHGGGT--------SSSCCEEEEESSCCTHHHHHHHHTTC---EEEEECCEETT
T ss_pred C-------ceeeeecccchHHHHHHHHHHHHh--------cCCCCEEEEeCCCcHhHHHHHHHcCC---eEEEEEeecCc
Confidence 2 33 45888898886554433211 01556788889999999999999999 99999985334
Q ss_pred CcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccC---hhHHHHHHHHhCCeEEcccccccccccCc--ccccc-
Q 010125 229 SYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACICP--EFRHF- 302 (517)
Q Consensus 229 ~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idp---l~eI~~i~~~~gi~lhvDaA~g~~~~~~~--~~~~~- 302 (517)
++.+|+++|++++++... ...+++.+.++|+||.+-+ +++|+++|++||+++++|.+|+.+..... .....
T Consensus 165 ~~~~d~~~l~~~l~~~~~---~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~ 241 (409)
T 4eu1_A 165 TKGLNLAGMLECLDKAPE---GSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPR 241 (409)
T ss_dssp TTEECHHHHHHHHHHSCT---TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHH
T ss_pred CCcCcHHHHHHHHHhCCC---CcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHH
Confidence 689999999999975211 2356777889999999876 55699999999999999999987654321 01111
Q ss_pred -ccCCCCCCeeeeccccccCC-CCcceEE--EEeCchh---HHhhhcCCccccCCccccccccccCCCccccCCCCCCch
Q 010125 303 -IDGVEGADSFSLNAHKWFFA-TLDCCCL--WVKDPRA---LVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSL 375 (517)
Q Consensus 303 -~~g~~~aDsi~~~~hK~l~~-p~~~g~l--~~~~~~~---~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al 375 (517)
+.+...-..++.+++|.++. ...+|++ ++.++.. +...+.. +... +..+ ...+
T Consensus 242 ~~~~~~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~---~~~~--------------~~~~---~~~~ 301 (409)
T 4eu1_A 242 HLVDMVPNLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLAL---LIRP--------------MYNN---PPLY 301 (409)
T ss_dssp HHHTTSSCCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHH---HHHH--------------HHSS---CCHH
T ss_pred HHHhhCCcEEEEecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHH---HHhh--------------hcCC---CChH
Confidence 11111222456679999974 4667887 6666542 1111110 0000 0000 1223
Q ss_pred HHHHHHHHhc--------HHHHHHHHHHHHHHHHHHHHHHhcCC--C-eEEecCCCeeEEEEEecCCCcchhhhhhhhhc
Q 010125 376 KLWFVIRNYG--------VANLRHFLRSHVNMAKLFERLVSGDK--R-FEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVN 444 (517)
Q Consensus 376 ~~~~~l~~~g--------~~g~~~~i~~~~~~a~~l~~~l~~~~--~-~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~ 444 (517)
..+++...+. .+.++++.++..++++++.+.|++.+ + +++. +|+.+++.|. ..
T Consensus 302 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~~~~~~~~~--~~------------- 365 (409)
T 4eu1_A 302 GAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACGSVHDWSHI-ERQVGMMAYT--GL------------- 365 (409)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHH-HHSCSSEEEC--CC-------------
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccee-cCCceEEEEe--CC-------------
Confidence 3333333332 33467788888999999999998862 1 5443 3445555551 11
Q ss_pred cccchHHHHHHHHHHHHHHHH-hcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 010125 445 CLLSEEEQINEFNRELLESIN-ASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHL 508 (517)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~ 508 (517)
+ .++..++. +.|+. +.+. .|++++. . +++++++++++|+++.
T Consensus 366 ----~--------~~~~~~ll~~~gv~-v~p~-------~Ri~~~~-~-~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 366 ----T--------REQVELLRSEYHIY-MTLN-------GRAAVSG-L-NSTNVEYVSQAIHNVT 408 (409)
T ss_dssp ----C--------HHHHHHHHHHHCEE-CCTT-------CEEEGGG-C-CTTTHHHHHHHHHHHH
T ss_pred ----C--------HHHHHHHHHcCCEE-EcCC-------CEEEEEe-c-CHhhHHHHHHHHHHHh
Confidence 0 11223333 45754 3331 3888853 3 3457999999998764
No 201
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.78 E-value=7.4e-18 Score=173.97 Aligned_cols=235 Identities=13% Similarity=0.092 Sum_probs=161.1
Q ss_pred hhHHHHHHHHHHHHHHcCCCcccccCCCCceEE---cCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCC-CCchHH
Q 010125 130 AATELENIVMDWLGQMLKLPKSFLFSGNGGGVI---QGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSD-QTHCAL 205 (517)
Q Consensus 130 ~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~---t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~-~~H~s~ 205 (517)
+..++| +.+++++|.+. .++ ++|||+||..++.+..+ +++.|++++ ..|...
T Consensus 74 ~~~~Le----~~lA~l~g~e~---------alv~p~~~sGt~Ai~~al~all~-----------pGD~Vl~~~~~~y~~~ 129 (427)
T 3i16_A 74 GRDSLD----AVYARVFNTES---------ALVRPHFVNGTHALGAALFGNLR-----------PGNTMLSVCGEPYDTL 129 (427)
T ss_dssp HHHHHH----HHHHHHHTCSE---------EEEETTCCSHHHHHHHHHHHHCC-----------TTCEEEESSSSCCGGG
T ss_pred HHHHHH----HHHHHHhCCcc---------eEEeCCCccHHHHHHHHHHHHhC-----------CCCEEEEeCCCccHHH
Confidence 444455 56888888763 355 88999999877765432 566788887 777665
Q ss_pred H-----------HHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHH--HhHhcCCcceEEEeec----cCCccccccC
Q 010125 206 Q-----------KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQIN--SDVEVGLIPLFLCATI----GTTAITAVDP 268 (517)
Q Consensus 206 ~-----------kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~--~~~~~g~~p~~vv~t~----gtt~~G~idp 268 (517)
. +.++..|+ +++.+|+++ ++.+|+++|+++++ +++ .+|+++. +++++|.+.|
T Consensus 130 ~~~~g~~~~~~~~~l~~~G~---~~~~v~~~~--~g~~D~e~l~~~l~~~~~t------klV~i~~s~~~p~nptg~i~d 198 (427)
T 3i16_A 130 HDVIGITENSNMGSLKEFGI---NYKQVDLKE--DGKPNLEEIEKVLKEDESI------TLVHIQRSTGYGWRRALLIED 198 (427)
T ss_dssp HHHHTCSCCCSSCCTGGGTC---EEEECCCCT--TSSCCHHHHHHHHHTCTTE------EEEEEECSCCSSSSCCCCHHH
T ss_pred HHHHhccccchHHHHHHcCC---EEEEecCcc--CCCcCHHHHHHHhhCCCCC------EEEEEEcCCCCCCCCcccHHH
Confidence 5 34455688 899999875 56899999999998 433 4788877 8999999999
Q ss_pred hhHHHHHHHH--hCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCC--CcceEEEEeCchhHHhhhcC-
Q 010125 269 LKPLCDVAKQ--FGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFAT--LDCCCLWVKDPRALVSSLST- 343 (517)
Q Consensus 269 l~eI~~i~~~--~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p--~~~g~l~~~~~~~~~~~~~~- 343 (517)
+++|+++|++ ||+++|||++|+.+........ .++|.++.++||+++.+ ...|+++.+ ++... .+..
T Consensus 199 l~~i~~la~~~~~g~~livD~a~~~~~~~~~p~~------~gaDiv~~S~sK~lgg~g~~~gG~i~~~-~~li~-~l~~~ 270 (427)
T 3i16_A 199 IKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPTD------VGADLIAGSLIKNIGGGIAPTGGYLAGT-KDCIE-KTSYR 270 (427)
T ss_dssp HHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGGG------GTCSEEEEETTSGGGTTTCCSCEEEEEC-HHHHH-HHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEECCCccccccCCccc------cCCeEEEecCcccCCCCCCceEEEEEEC-HHHHH-HHHHh
Confidence 9999999999 9999999999987653221111 16899999999999863 234776665 33322 2211
Q ss_pred -CccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCee
Q 010125 344 -NPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFA 422 (517)
Q Consensus 344 -~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~~~ 422 (517)
....+ +...+-.+. ..|.+++ |......++++..+++.++++.|+++ ++++. +....
T Consensus 271 ~~~~~~----------------g~~~~~~~~--~a~~~l~--gl~~~~~r~~~~~~~a~~la~~L~~~-g~~V~-p~~~~ 328 (427)
T 3i16_A 271 LTVPGI----------------GGECGSTFG--VVRSMYQ--GLFLAPHISMEALKGAILCSRIMELA-GFEVM-PKYDE 328 (427)
T ss_dssp HSCTTT----------------GGGCCCCTT--CHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEE-SCTTS
T ss_pred cccCcc----------------CccCCccHH--HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhC-CCeec-CCCCC
Confidence 11111 001111111 1455554 34556788999999999999999998 56775 32333
Q ss_pred -----EEEEEec
Q 010125 423 -----VVCFRVS 429 (517)
Q Consensus 423 -----~v~f~~~ 429 (517)
+++|.+.
T Consensus 329 ~~~~~i~~i~l~ 340 (427)
T 3i16_A 329 KRSDIIQSIKFN 340 (427)
T ss_dssp CCSSSCEEEECS
T ss_pred CCccEEEEEEEC
Confidence 7778775
No 202
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.78 E-value=5.9e-17 Score=168.79 Aligned_cols=302 Identities=9% Similarity=-0.008 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCC-CeEEEeCCCCchHHHHHHHHcC
Q 010125 135 ENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENIS-KLIVYGSDQTHCALQKAAQIVG 213 (517)
Q Consensus 135 E~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~-~~~v~~s~~~H~s~~kaa~~~G 213 (517)
..++.+++++++|.+ ..++++|||+|+..|+.+++.......|.. .+ +.+|+.....|.+...++...|
T Consensus 120 ~~~l~~~la~~~g~~---------~v~~~~sGseA~~~al~~~~~~~~~~~g~~-~g~~~vi~~~~~yhg~~~~~~~~~g 189 (439)
T 2oat_A 120 LGEYEEYITKLFNYH---------KVLPMNTGVEAGETACKLARKWGYTVKGIQ-KYKAKIVFAAGNFWGRTLSAISSST 189 (439)
T ss_dssp HHHHHHHHHHHHTCS---------EEEEESSHHHHHHHHHHHHHHHHHHTTCCC-TTCCEEEEETTCCCCSSHHHHTTCC
T ss_pred HHHHHHHHHHhcCCC---------EEEEeCCHHHHHHHHHHHHHHHhhhccCCC-CCCCeEEEEcCCCCCCCHhHhhcCC
Confidence 344555666666632 579999999999999998875322111111 02 3445555455666666655555
Q ss_pred C-------C--CCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcccccc----ChhHHHHHHHHhC
Q 010125 214 I-------D--VKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVD----PLKPLCDVAKQFG 280 (517)
Q Consensus 214 ~-------g--~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~id----pl~eI~~i~~~~g 280 (517)
. + ...++.+|.+ |+++|+++|+.. .+.+|+++...+++|.+- ++++|.++|++||
T Consensus 190 ~~~~~~~~~p~~~~v~~~~~~-------d~~~le~~l~~~-----~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g 257 (439)
T 2oat_A 190 DPTSYDGFGPFMPGFDIIPYN-------DLPALERALQDP-----NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQ 257 (439)
T ss_dssp CHHHHTTSCSCCTTEEEECSS-------CHHHHHHHTTST-----TEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTT
T ss_pred ChhcccCCCCCCCCeEEeCCC-------CHHHHHHHhCCC-----CEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 1 1 0266777642 899999998521 234666665556688765 7999999999999
Q ss_pred CeEEcccccccccccCccccccccCCCCCCeeeeccccccCCC-CcceEEEEeCchhHHhhhcCCccccCCccccccccc
Q 010125 281 IWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVV 359 (517)
Q Consensus 281 i~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p-~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~ 359 (517)
+++++|++|.++............++ ..|.+ +++|+++.+ +..|+++++++ +.+.+.. .. .
T Consensus 258 illI~DEv~~g~g~~g~~~~~~~~~~-~~Di~--t~sK~l~~G~~~~G~v~~~~~--~~~~l~~---~~-~--------- 319 (439)
T 2oat_A 258 VLFIADEIQTGLARTGRWLAVDYENV-RPDIV--LLGKALSGGLYPVSAVLCDDD--IMLTIKP---GE-H--------- 319 (439)
T ss_dssp CEEEEECTTTTTTTTSSSSGGGGGTC-CCSEE--EECGGGGTTSSCCEEEEECHH--HHTTSCT---TS-S---------
T ss_pred CEEEEeccccCCccCCcchhHHHhCC-CCcEE--EecccccCCCCCeEEEEECHH--HHhccCC---CC-c---------
Confidence 99999999966432111111011122 46766 567999876 67999988643 2222211 00 0
Q ss_pred cCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe--cCCCeeEEEEEecCCCcchhh
Q 010125 360 DYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIV--FPCHFAVVCFRVSPSPVLMDK 437 (517)
Q Consensus 360 ~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~--~~~~~~~v~f~~~~~~~~~~~ 437 (517)
..++ .+.........++++.+..+ +..++..++++++.+.|+++ ++.++ .++..+++.+.+....
T Consensus 320 ---~~t~-~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~g~~~~v~l~~~~----- 386 (439)
T 2oat_A 320 ---GSTY-GGNPLGCRVAIAALEVLEEE---NLAENADKLGIILRNELMKL-PSDVVTAVRGKGLLNAIVIKETK----- 386 (439)
T ss_dssp ---CCSS-TTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHTTS-CTTTEEEEEEETTEEEEEECCCS-----
T ss_pred ---ccCC-CcCHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHh-cCCCcEEEEeeeeEEEEEEecCc-----
Confidence 0011 11111222334445444332 46677888999999999876 33211 1233456666664320
Q ss_pred hhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 010125 438 LKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHLEA 510 (517)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~ 510 (517)
. ....++.+.|.++|... .+ .+..++|+++ +..++++|+++++++|+++.++
T Consensus 387 -----------~-----~~~~~l~~~l~~~Gv~v-~~---~~~~~iRi~~-~~~~t~e~i~~~l~~l~~~l~~ 438 (439)
T 2oat_A 387 -----------D-----WDAWKVCLRLRDNGLLA-KP---THGDIIRFAP-PLVIKEDELRESIEIINKTILS 438 (439)
T ss_dssp -----------S-----CCHHHHHHHHHHTTEEC-CB---SSSSEEEECC-CTTCCHHHHHHHHHHHHHHHHT
T ss_pred -----------c-----HHHHHHHHHHHHCCeEE-ec---CCCCEEEEEC-ccCCCHHHHHHHHHHHHHHHHh
Confidence 0 01245677777778644 33 2356899987 4577889999999999887653
No 203
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.77 E-value=3.4e-16 Score=164.67 Aligned_cols=339 Identities=12% Similarity=0.027 Sum_probs=194.9
Q ss_pred hhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHH
Q 010125 130 AATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAA 209 (517)
Q Consensus 130 ~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa 209 (517)
.......++.+|++++++.+.+ ..+|++|||+||..|+.++|.....+ |..+ ++.+|......|.+..-+.
T Consensus 94 ~~~~~~~~la~~l~~~~~~~~~-------~v~~~~sGseA~~~Aik~a~~~~~~~-g~~~-~~~vi~~~~~yHg~~~~~~ 164 (476)
T 3i5t_A 94 MATSPAARLAEKIATLTPGDLN-------RIFFTTGGSTAVDSALRFSEFYNNVL-GRPQ-KKRIIVRYDGYHGSTALTA 164 (476)
T ss_dssp CBCHHHHHHHHHHHTTSSTTCC-------EEEEESSHHHHHHHHHHHHHHHHHHT-TCTT-CCEEEEETTCCCCSSHHHH
T ss_pred cCCHHHHHHHHHHHhcCCCCcC-------EEEEeCchHHHHHHHHHHHHHHHHhc-CCCC-CCEEEEEcCCcCcCChhhc
Confidence 3456677888999999865433 68999999999999999998754322 2211 2334444444554444443
Q ss_pred HHcCCC---------CCCEEEEecCCCCC-cccC--------HHHHHHHHHHhHhcCCcceEEEeeccCCccccccC---
Q 010125 210 QIVGID---------VKNFRAIKTTKSSS-YGLS--------PDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDP--- 268 (517)
Q Consensus 210 ~~~G~g---------~~~v~~vp~d~~~~-~~~d--------~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idp--- 268 (517)
...|.. ...+..++....-. +..+ +++|+++|++.. ...+.+|++....++.|.+-+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~--~~~~aavi~ep~~~~~G~~~~~~~ 242 (476)
T 3i5t_A 165 ACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLG--PDTIAAFLAEPILASGGVIIPPAG 242 (476)
T ss_dssp HTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBTTTTSBCCCTT
T ss_pred cccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcC--CCCEEEEEECCccCCCCcccCCHH
Confidence 333321 12345555321000 1122 789999987421 012457777777777887655
Q ss_pred -hhHHHHHHHHhCCeEEcccccccccccCcccccc-ccCCCCCCeeeeccccccCCC-CcceEEEEeCchhHHhhhcCCc
Q 010125 269 -LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHF-IDGVEGADSFSLNAHKWFFAT-LDCCCLWVKDPRALVSSLSTNP 345 (517)
Q Consensus 269 -l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~-~~g~~~aDsi~~~~hK~l~~p-~~~g~l~~~~~~~~~~~~~~~~ 345 (517)
+++|.++|++||++|++|++|.++......+... ..++ ..|.+++ .|.++.+ +..|+++.+++ +.+.+....
T Consensus 243 ~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v-~pdi~t~--sK~l~~G~~plg~v~~~~~--i~~~~~~~~ 317 (476)
T 3i5t_A 243 YHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGV-VPDIITF--AKGVTSGYVPLGGLAISEA--VLARISGEN 317 (476)
T ss_dssp HHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCC-CCSEEEE--CGGGGTTSSCCEEEEECHH--HHHTTSGGG
T ss_pred HHHHHHHHHHHcCCEEEEEecccCCccccCceeeecccCC-Ccchhhh--hhhhcCCCcCeEEEEECHH--HHHHHhcCC
Confidence 9999999999999999999998754322111111 1122 4677765 4999877 67888887542 233332110
Q ss_pred cccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC---CCeEEecCCCee
Q 010125 346 EYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGD---KRFEIVFPCHFA 422 (517)
Q Consensus 346 ~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~---~~~~l~~~~~~~ 422 (517)
... ..+....+-...++...+++..+..-.-++++++..++.+++++.|+++ |.+..+ .+...
T Consensus 318 ~~~-------------~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v-~~~G~ 383 (476)
T 3i5t_A 318 AKG-------------SWFTNGYTYSNQPVACAAALANIELMEREGIVDQAREMADYFAAALASLRDLPGVAET-RSVGL 383 (476)
T ss_dssp CTT-------------CEECCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTTTSTTEEEE-EEETT
T ss_pred ccc-------------ccccccCCCCcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-EecCc
Confidence 000 0000001111233444444433321011346677777888888888764 334333 23344
Q ss_pred EEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHH
Q 010125 423 VVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWT 502 (517)
Q Consensus 423 ~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~ 502 (517)
++.+.+..... + .............+.+.+.++|.++.+. | .++|++. ....++++++++++
T Consensus 384 ~~~i~~~~~~~----------~--~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----g-~~iRi~p-~l~~t~e~i~~~l~ 445 (476)
T 3i5t_A 384 VGCVQCLLDPT----------R--ADGTAEDKAFTLKIDERCFELGLIVRPL----G-DLCVISP-PLIISRAQIDEMVA 445 (476)
T ss_dssp EEEEEECCC-----------------CCHHHHHHHHHHHHHHHHTTEECEEE----T-TEEEECC-CTTCCHHHHHHHHH
T ss_pred eeEEEEecCcc----------c--cccccchhHHHHHHHHHHHHCCCEEEec----C-CEEEEEC-CCCCCHHHHHHHHH
Confidence 55666643210 0 0000001123567778888888654332 3 6899986 45678899999999
Q ss_pred HHHHHHHHHHhhcC
Q 010125 503 VVQQHLEAFQSAFK 516 (517)
Q Consensus 503 ~l~~~~~~l~~~~~ 516 (517)
+|+++.+++.++.+
T Consensus 446 ~l~~~l~~~~~~~~ 459 (476)
T 3i5t_A 446 IMRQAITEVSAAHG 459 (476)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC
Confidence 99999988876544
No 204
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=99.77 E-value=1e-16 Score=168.00 Aligned_cols=333 Identities=11% Similarity=0.029 Sum_probs=185.5
Q ss_pred hHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEe-CCCCchHHHHHH
Q 010125 131 ATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYG-SDQTHCALQKAA 209 (517)
Q Consensus 131 ~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~-s~~~H~s~~kaa 209 (517)
......++.++++++++.+.+ ..+|++|||+||..|+.+++..... .|.. ++..|++ ....|.+..-+.
T Consensus 93 ~~~~~~~la~~l~~~~~~~~~-------~v~~~~gGseA~~~al~~~~~~~~~-~g~~--~~~~vi~~~~~yhg~~~~~~ 162 (460)
T 3gju_A 93 GTEASITLAKMIIDRAPKGMS-------RVYFGLSGSDANETNIKLIWYYNNV-LGRP--EKKKIISRWRGYHGSGVMTG 162 (460)
T ss_dssp CCHHHHHHHHHHHHHSCTTEE-------EEEEESSHHHHHHHHHHHHHHHHHH-TTCT--TCCEEEEETTCCCCSSHHHH
T ss_pred CCHHHHHHHHHHHhhCCCCcC-------EEEEeCchHHHHHHHHHHHHHHHHh-cCCC--CCCEEEEECCCcCCCCHHHh
Confidence 345666778888888765543 6899999999999999998864321 1211 3344444 444454444343
Q ss_pred HHcCC---------CCCCEEEEecCCC---CCcccC--------HHHHHHHHHHhHhcCCcceEEEeeccCCccccccC-
Q 010125 210 QIVGI---------DVKNFRAIKTTKS---SSYGLS--------PDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDP- 268 (517)
Q Consensus 210 ~~~G~---------g~~~v~~vp~d~~---~~~~~d--------~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idp- 268 (517)
...|. ....+..+|.... ++..++ +++|+++|++.. ...+.+|++...++++|.+-+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~--~~~~aaii~ep~~~~~G~~~~~ 240 (460)
T 3gju_A 163 SLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEG--PETIAAFIGEPILGTGGIVPPP 240 (460)
T ss_dssp HHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBSTTTSBCCC
T ss_pred hccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcC--CCCEEEEEECCccCCCCCccCC
Confidence 33222 1124666764210 011233 689999887421 112456777777777787665
Q ss_pred ---hhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCC-CcceEEEEeCchhHHhhhcCC
Q 010125 269 ---LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCCLWVKDPRALVSSLSTN 344 (517)
Q Consensus 269 ---l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p-~~~g~l~~~~~~~~~~~~~~~ 344 (517)
+++|.++|++||+++++|++|.++............++ ..|.+++ .|.++.+ ...|+++.+++ +.+.+...
T Consensus 241 ~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~-~pdi~t~--sK~l~gG~~~lg~v~~~~~--i~~~~~~~ 315 (460)
T 3gju_A 241 AGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGI-KPDLITI--AKGLTSAYAPLSGVIVADR--VWQVLVQG 315 (460)
T ss_dssp TTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTC-CCSEEEE--CGGGTTTSSCCEEEEEEHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCC-CCCeeee--ehhhcCCCCCeEEEEECHH--HHHHHhcc
Confidence 99999999999999999999987643221111111122 4677665 5999776 57888887643 22223110
Q ss_pred ---ccccCCccccccccccCCCccccCCCCCCchHHHH---HHHHhcHHHH-HHHHHHHHHHHHHHHHHHhcCCCeEEec
Q 010125 345 ---PEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWF---VIRNYGVANL-RHFLRSHVNMAKLFERLVSGDKRFEIVF 417 (517)
Q Consensus 345 ---~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~---~l~~~g~~g~-~~~i~~~~~~a~~l~~~l~~~~~~~l~~ 417 (517)
...+.. ..+.....+...+ +++.+..+.+ +...+....+.+.+.+.+++.|.+..+
T Consensus 316 ~~~~~~~~~----------------~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~- 378 (460)
T 3gju_A 316 SDKLGSLGH----------------GWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEV- 378 (460)
T ss_dssp HHHHCSCSC----------------CCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEE-
T ss_pred ccccccccc----------------CCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-
Confidence 000100 0111123333333 3443323332 222222333444444555566655444
Q ss_pred CCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHH
Q 010125 418 PCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHV 497 (517)
Q Consensus 418 ~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di 497 (517)
.+...++.+.+..... ....... ......++.+.+.++|.++.+.. +..++|+++ ....+++++
T Consensus 379 ~~~g~~~~~~~~~~~~----------~~~~~~~--~~~~~~~~~~~l~~~Gv~v~~~~---~~~~iRi~~-~~~~t~e~i 442 (460)
T 3gju_A 379 RGDGMLAAVEFVADKD----------DRVFFDA--SQKIGPQVATALAASGVIGRAMP---QGDILGFAP-PLCLTREQA 442 (460)
T ss_dssp EEETTEEEEEECSBTT----------TTBCCCG--GGCHHHHHHHHHHHTTEECEECS---SSCEEEECC-CTTCCHHHH
T ss_pred eeeeEEEEEEEccCcc----------ccccccc--hHHHHHHHHHHHHHCCeEEecCC---CCCEEEEEC-CCCCCHHHH
Confidence 3344566666643210 0000000 01234567778888897544322 346899996 356788899
Q ss_pred HHHHHHHHHHHHHHHh
Q 010125 498 VVAWTVVQQHLEAFQS 513 (517)
Q Consensus 498 ~~l~~~l~~~~~~l~~ 513 (517)
++++++|+++.+++.+
T Consensus 443 ~~~l~~l~~~l~~~~~ 458 (460)
T 3gju_A 443 DIVVSKTADAVKSVFA 458 (460)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999887653
No 205
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=99.77 E-value=4.3e-17 Score=169.31 Aligned_cols=319 Identities=13% Similarity=0.005 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHHc
Q 010125 133 ELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQIV 212 (517)
Q Consensus 133 ~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~~ 212 (517)
....++.+.+++++|.+.+ ..++|+||++|+..++.+++... + ++.+|+.....|.+...+....
T Consensus 85 ~~~~~l~~~la~~~~~~~~-------~v~~~~gg~ea~~~a~~~~~~~~----~----~~~vi~~~~~yhg~~~~~~~~~ 149 (433)
T 1zod_A 85 RPVVDLATRLANITPPGLD-------RALLLSTGAESNEAAIRMAKLVT----G----KYEIVGFAQSWHGMTGAAASAT 149 (433)
T ss_dssp HHHHHHHHHHHHHSCTTCC-------EEEEESCHHHHHHHHHHHHHHHH----T----CCEEEEETTCCCCSSHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCCcC-------EEEEeCchHHHHHHHHHHHHHhh----C----CCeEEEECCCcCCCChhHHhhc
Confidence 4455667788888886543 68999999999999998776421 1 2234444444555444444332
Q ss_pred CC--------CCCCEEEEecCCC--C--------CcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccC----hh
Q 010125 213 GI--------DVKNFRAIKTTKS--S--------SYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDP----LK 270 (517)
Q Consensus 213 G~--------g~~~v~~vp~d~~--~--------~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idp----l~ 270 (517)
+. -...++.+++... . .+.+|+++|+++|++. ....+.+|+++..++++|.+-| ++
T Consensus 150 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~~~~~vi~~p~~~~~G~~~~~~~~l~ 227 (433)
T 1zod_A 150 YSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQ--SSGNLAAFIAEPILSSGGIIELPDGYMA 227 (433)
T ss_dssp CSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHH--CCSCEEEEEECSEETTTTCEECCTTHHH
T ss_pred CCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhc--CCCCeEEEEEccccCCCCcccCCHHHHH
Confidence 21 0124666665310 0 1235799999999752 1112345665555567897655 99
Q ss_pred HHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCccccCC
Q 010125 271 PLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKN 350 (517)
Q Consensus 271 eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl~~ 350 (517)
+|+++|++||+++++|++|+++............++ ..|.++ +.|+++.+++.|++++++. . .+.+... .+...
T Consensus 228 ~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~-~~di~s--~sK~~~~G~~ig~~~~~~~-~-~~~~~~~-~~~~~ 301 (433)
T 1zod_A 228 ALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGV-TPDILT--LSKTLGAGLPLAAIVTSAA-I-EERAHEL-GYLFY 301 (433)
T ss_dssp HHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTC-CCSEEE--ECHHHHTTSSCEEEEECHH-H-HHHHHHT-TCCCC
T ss_pred HHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCC-CCCEEE--ecccccCCCCeeEEEEhHH-H-HHhhccC-CCCCC
Confidence 999999999999999999986532211111001122 356554 5699987788999988653 2 2233211 01100
Q ss_pred ccccccccccCCCccccCCCCCCchHH---HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhc----CCCeEEecCCCeeE
Q 010125 351 KATESMQVVDYKDWQITLSRRFRSLKL---WFVIRNYGVANLRHFLRSHVNMAKLFERLVSG----DKRFEIVFPCHFAV 423 (517)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~sr~~~al~~---~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~----~~~~~l~~~~~~~~ 423 (517)
.+. ....+.. .++++.+..+ ++.++..++++++.+.|++ .|.+..+ ++..++
T Consensus 302 -------------~t~----~~~~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~-~~~g~~ 360 (433)
T 1zod_A 302 -------------TTH----VSDPLPAAVGLRVLDVVQRD---GLVARANVMGDRLRRGLLDLMERFDCIGDV-RGRGLL 360 (433)
T ss_dssp -------------CTT----TTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTE
T ss_pred -------------CCC----CcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEE
Confidence 000 1122333 3344433222 3456666777788777765 3544333 334456
Q ss_pred EEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHH
Q 010125 424 VCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTV 503 (517)
Q Consensus 424 v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~ 503 (517)
+.+.+..... ..... .....++.+.|.++|.++.....+.+..++|+++ +...+++++++++++
T Consensus 361 ~~i~~~~~~~------------~~~~~---~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~lRi~~-~~~~t~~~i~~~l~~ 424 (433)
T 1zod_A 361 LGVEIVKDRR------------TKEPA---DGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAP-PLTVSEDEIDLGLSL 424 (433)
T ss_dssp EEEEEEEETT------------TTEEC---TTHHHHHHHHHHHTTEECCEECCTTSCCEEEECC-CTTCCHHHHHHHHHH
T ss_pred EEEEEecCcc------------ccCCC---hHHHHHHHHHHHHCCCeEeccCCCCCCCEEEEEC-CcCCCHHHHHHHHHH
Confidence 6666542100 00000 0123456777777886544333222246899987 456788899999999
Q ss_pred HHHHHHHH
Q 010125 504 VQQHLEAF 511 (517)
Q Consensus 504 l~~~~~~l 511 (517)
|+++.+++
T Consensus 425 l~~~l~~~ 432 (433)
T 1zod_A 425 LGQAIERA 432 (433)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99887654
No 206
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.76 E-value=3.1e-16 Score=163.68 Aligned_cols=326 Identities=12% Similarity=0.064 Sum_probs=185.0
Q ss_pred HHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHH
Q 010125 132 TELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQI 211 (517)
Q Consensus 132 ~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~ 211 (517)
..+..++.+.++++++.+.+ ..++|+|||+|+..++.+++... ...|.. .++.+|+.+...|.+...++..
T Consensus 92 ~~~~~~l~~~la~~~~~~~~-------~v~~~~ggsea~~~al~~~~~~~-~~~g~~-~~~~vi~~~~~yhg~~~~~~~~ 162 (449)
T 3a8u_X 92 HPLSFQLAEKITDLTPGNLN-------HVFFTDSGSECALTAVKMVRAYW-RLKGQA-TKTKMIGRARGYHGVNIAGTSL 162 (449)
T ss_dssp CHHHHHHHHHHHTTSSTTEE-------EEEEESSHHHHHHHHHHHHHHHH-HHTTCT-TCCEEEEETTCCCCSSHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCC-------EEEEcCcHHHHHHHHHHHHHHHH-HhcCCC-CCCEEEEECCCcCCCChhhhhc
Confidence 33445667778888765543 68999999999999998887532 111211 0233444455566555556665
Q ss_pred cCC-------C--CCCEEEEecCCC--CC-cccC--------HHHHHHHHHHhHhcCCcceEEEeeccCCccccccC---
Q 010125 212 VGI-------D--VKNFRAIKTTKS--SS-YGLS--------PDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDP--- 268 (517)
Q Consensus 212 ~G~-------g--~~~v~~vp~d~~--~~-~~~d--------~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idp--- 268 (517)
.|. + ...++.+++... .+ ..+| +++|+++|++.. ...+.+|+++..++++|.+-|
T Consensus 163 ~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~--~~~~~~vi~~p~~~~tG~~~~~~~ 240 (449)
T 3a8u_X 163 GGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHD--ASNIAAVFVEPLAGSAGVLVPPEG 240 (449)
T ss_dssp CCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHC--GGGEEEEEECSSBTTTTCBCCCTT
T ss_pred cCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcC--CCCEEEEEEcCccCCCCCccCCHH
Confidence 542 1 114566665321 00 0146 999999997421 012346666655567998888
Q ss_pred -hhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCC-CcceEEEEeCchhHHhhhcCCcc
Q 010125 269 -LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCCLWVKDPRALVSSLSTNPE 346 (517)
Q Consensus 269 -l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p-~~~g~l~~~~~~~~~~~~~~~~~ 346 (517)
+++|.++|++||+++++|++|.++............++ ..|.+ +++|+++.. +..|++++++ +. .+.+.....
T Consensus 241 ~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~-~~di~--s~sK~l~~G~~~~G~~~~~~-~~-~~~l~~~~~ 315 (449)
T 3a8u_X 241 YLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFGV-TPDLM--CIAKQVTNGAIPMGAVIAST-EI-YQTFMNQPT 315 (449)
T ss_dssp HHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTC-CCSEE--EECGGGGTTSSCCEEEEEEH-HH-HHHHHTCSS
T ss_pred HHHHHHHHHHHhCCEEEEeccccCccccCcchhhhhcCC-CCCEE--EEcccccCCCCceEEEEECH-HH-HHHhhccCc
Confidence 99999999999999999999965432211111001122 35766 456999754 4589888864 32 233322100
Q ss_pred ccCCccccccccccCCCccccCCCCCCchHH---HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe--cCCCe
Q 010125 347 YLKNKATESMQVVDYKDWQITLSRRFRSLKL---WFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIV--FPCHF 421 (517)
Q Consensus 347 yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~---~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~--~~~~~ 421 (517)
.... . .+ ....+-....+.. .++++.+.. +++.++..++.+++++.|++++.+.++ .++..
T Consensus 316 ---~~~~---~--~~---~~~~t~~~~~~~~aa~~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g 381 (449)
T 3a8u_X 316 ---PEYA---V--EF---PHGYTYSAHPVACAAGLAALCLLQK---ENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFG 381 (449)
T ss_dssp ---CTTS---C--SS---CCCCTTTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEET
T ss_pred ---cccc---c--cc---cccCCCcccHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeE
Confidence 0000 0 00 0001111123333 333443322 246677888889999998774322211 12334
Q ss_pred eEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHH
Q 010125 422 AVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAW 501 (517)
Q Consensus 422 ~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~ 501 (517)
+++.+.+..... .. .....++.+.|.++|++.... + .++|+++ ...++++++++++
T Consensus 382 ~~~~i~~~~~~~---------------~~---~~~~~~~~~~l~~~Gv~v~~~----g-~~iRis~-~~~~t~~~i~~~l 437 (449)
T 3a8u_X 382 LAGAIQIAPRDG---------------DA---IVRPFEAGMALWKAGFYVRFG----G-DTLQFGP-TFNSKPQDLDRLF 437 (449)
T ss_dssp TEEEEEECCBTT---------------BS---SHHHHHHHHHHHHHTEECEEE----T-TEEEECC-CTTCCHHHHHHHH
T ss_pred EEEEEEEecCcc---------------cc---cccHHHHHHHHHHCCcEEecC----C-CEEEEEC-CCcCCHHHHHHHH
Confidence 566776643210 00 001124667777778654332 3 6899997 3567888999999
Q ss_pred HHHHHHHHHH
Q 010125 502 TVVQQHLEAF 511 (517)
Q Consensus 502 ~~l~~~~~~l 511 (517)
++|+++.+++
T Consensus 438 ~~l~~~l~~~ 447 (449)
T 3a8u_X 438 DAVGEVLNKL 447 (449)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 207
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.76 E-value=1.2e-17 Score=171.81 Aligned_cols=231 Identities=11% Similarity=0.004 Sum_probs=158.3
Q ss_pred HHHHHHHHcCCCcccccCCCCceEE---cCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCC-CCchHHHHH-----
Q 010125 138 VMDWLGQMLKLPKSFLFSGNGGGVI---QGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSD-QTHCALQKA----- 208 (517)
Q Consensus 138 v~~~l~~l~g~~~~~~~~~~~~g~~---t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~-~~H~s~~ka----- 208 (517)
+.+.+++++|.+. .++ ++|||+||..++.+..+ +++.|++++ ..|......
T Consensus 64 Le~~lA~l~g~e~---------alv~p~~~sGt~Ai~~al~all~-----------~GD~Vl~~~~~~y~~~~~~~~~~g 123 (409)
T 3jzl_A 64 LERVYATVFKTEA---------ALVRPQIISGTHAISTVLFGILR-----------PDDELLYITGQPYDTLEEIVGIRK 123 (409)
T ss_dssp HHHHHHHHHTCSE---------EEEETTSCSHHHHHHHHHHHHCC-----------TTCEEEECSSSCCTTHHHHHTSSS
T ss_pred HHHHHHHHhCCCc---------EEEECCCccHHHHHHHHHHHhcC-----------CCCEEEEeCCCCcHhHHHHHhccc
Confidence 3456778888763 355 88999999887765532 566788887 778777643
Q ss_pred -----HHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeec----cCCccccccChhHHHHHHHH-
Q 010125 209 -----AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATI----GTTAITAVDPLKPLCDVAKQ- 278 (517)
Q Consensus 209 -----a~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~----gtt~~G~idpl~eI~~i~~~- 278 (517)
++..|+ +++.+|+++ ++.+|+++|+++|++++ .+|+++. +++++|.+.|+++|+++|++
T Consensus 124 ~~~~~l~~~G~---~~~~v~~~~--~g~~d~e~l~~ai~~~t------klV~i~~s~g~p~nptg~v~~l~~I~~la~~~ 192 (409)
T 3jzl_A 124 QGQGSLKDFHI---GYSSVPLLE--NGDVDFPRIAKKMTPKT------KMIGIQRSRGYADRPSFTIEKIKEMIVFVKNI 192 (409)
T ss_dssp SSSSCTGGGTC---EEEECCCCT--TSCCCHHHHHHHCCTTE------EEEEEECSCTTSSSCCCCHHHHHHHHHHHHHH
T ss_pred chhhHHHHcCC---EEEEeCCCC--CCCcCHHHHHHhccCCC------eEEEEECCCCCCCCCcCccccHHHHHHHHHhh
Confidence 355677 899999875 57999999999997644 3788888 99999999999999999999
Q ss_pred -hCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCC--cceEEEEeCchhHHhhhcC--CccccCCccc
Q 010125 279 -FGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATL--DCCCLWVKDPRALVSSLST--NPEYLKNKAT 353 (517)
Q Consensus 279 -~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~--~~g~l~~~~~~~~~~~~~~--~~~yl~~~~~ 353 (517)
||+++|||++|+.+....... . .++|.++.++||+++.+. ..|+++.+ ++... .+.. ...++..
T Consensus 193 ~~~~~livD~a~~~~~~~~~p~-~-----~g~Div~~S~sK~lgg~~~~~GG~v~~~-~~li~-~l~~~~~~~~~g~--- 261 (409)
T 3jzl_A 193 NPEVIVFVDNCYGEFVEYQEPP-E-----VGADIIAGSLIKNPGGGLAKTGGYIAGK-EALVD-LCGYRLTTPGIGR--- 261 (409)
T ss_dssp CTTCEEEEECTTCTTTSSCCSG-G-----GTCSEEEEETTSGGGTTTCSSCEEEEEC-HHHHH-HHHHHHSCTTTGG---
T ss_pred CCCCEEEEeCCcccccccCCcc-c-----cCCeEEEECccccCCccCCceEEEEEeC-HHHHH-HHHHHhccccccc---
Confidence 999999999998765322111 1 168999999999998653 24666554 44332 2211 1111110
Q ss_pred cccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCee-----EEEEEe
Q 010125 354 ESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFA-----VVCFRV 428 (517)
Q Consensus 354 ~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~~~-----~v~f~~ 428 (517)
..+.... ..|++++ |......++++..+++.++++.|+++ ++++... ... +++|.+
T Consensus 262 -------------~~g~~~~--~~~~~l~--gl~~~~~r~~~~~~~a~~la~~L~~~-g~~v~p~-~~~~~~~~i~~i~l 322 (409)
T 3jzl_A 262 -------------EAGASLY--SLLEMYQ--GFFLAPHVTAQAIKGARFTAAMLAEF-GVEADPV-WDAPRTDLIQSVSF 322 (409)
T ss_dssp -------------GCCCCTT--CHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEESC-TTSCCSSSCCEEEC
T ss_pred -------------cccccHH--HHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHhC-CCcccCC-CCCCCccEEEEEEe
Confidence 0111111 1244443 33556778899999999999999998 6777432 223 667776
Q ss_pred c
Q 010125 429 S 429 (517)
Q Consensus 429 ~ 429 (517)
.
T Consensus 323 ~ 323 (409)
T 3jzl_A 323 H 323 (409)
T ss_dssp S
T ss_pred C
Confidence 4
No 208
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=99.76 E-value=2.2e-16 Score=165.41 Aligned_cols=326 Identities=12% Similarity=0.053 Sum_probs=184.2
Q ss_pred hHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCC-CchHHHHHH
Q 010125 131 ATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQ-THCALQKAA 209 (517)
Q Consensus 131 ~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~-~H~s~~kaa 209 (517)
......++.+|++++++.+.+ ..+|++|||+||..|+.+++..... .|.. ++..|++.+. .|....-+.
T Consensus 92 ~~~~~~~la~~l~~~~~~~~~-------~v~~~~ggseA~~~al~~~~~~~~~-~g~~--~~~~vi~~~~~yhg~~~~~~ 161 (459)
T 4a6r_A 92 THPAVVELSSLLAEVTPAGFD-------RVFYTNSGSESVDTMIRMVRRYWDV-QGKP--EKKTLIGRWNGYHGSTIGGA 161 (459)
T ss_dssp CCHHHHHHHHHHHHHSCTTCC-------EEEEESSHHHHHHHHHHHHHHHHHH-TTCT--TCCEEEEETTCCCCSSHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCC-------EEEEeCchHHHHHHHHHHHHHHHHh-cCCC--CCCEEEEECCCcCCccHHHH
Confidence 455667788999999876544 6899999999999999999874322 1211 3344444444 443333333
Q ss_pred HHcCCC---------CCCEEEEecCC--C-CCcccC--------HHHHHHHHHHhHhcCCcceEEEeeccCCccccccC-
Q 010125 210 QIVGID---------VKNFRAIKTTK--S-SSYGLS--------PDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDP- 268 (517)
Q Consensus 210 ~~~G~g---------~~~v~~vp~d~--~-~~~~~d--------~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idp- 268 (517)
...|.. ...+..++... . +++ +| +++|+++|++... ..+.+|++...+++.|.+-|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~~~--~~~~~vi~ep~~~~~G~~~~~ 238 (459)
T 4a6r_A 162 SLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEIGA--DKVAAFVGEPIQGAGGVIVPP 238 (459)
T ss_dssp HHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCG--GGEEEEEECSSBTTTTCBCCC
T ss_pred hhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHcCC--CCEEEEEECCccCCCCcccCC
Confidence 332321 11455565321 0 112 45 8899998874211 12346676666777788777
Q ss_pred ---hhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCC-CcceEEEEeCchhHHhhhcCC
Q 010125 269 ---LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCCLWVKDPRALVSSLSTN 344 (517)
Q Consensus 269 ---l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p-~~~g~l~~~~~~~~~~~~~~~ 344 (517)
+++|.++|++||+++++|++|.++......+.....++ ..|.+++ .|.++.+ ...|+++.+++ . .+.+...
T Consensus 239 ~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~-~pdi~t~--sK~l~gg~~~lg~v~~~~~-i-~~~~~~~ 313 (459)
T 4a6r_A 239 ATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGF-QPDLFTA--AKGLSSGYLPIGAVFVGKR-V-AEGLIAG 313 (459)
T ss_dssp TTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTC-CCSEEEE--CGGGGTTSSCCEEEEECHH-H-HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCC-CCCeeeh--hhhhcCCCCCccceeeCHH-H-HHHhhcC
Confidence 99999999999999999999987533221111111122 4677765 4998765 57888887543 2 2233210
Q ss_pred ccccCCccccccccccCCCccccCCCCCCchHHHHH---HHHhcHHHHHHHHHHHH-HHHHHHHHHH----hcCCCeEEe
Q 010125 345 PEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFV---IRNYGVANLRHFLRSHV-NMAKLFERLV----SGDKRFEIV 416 (517)
Q Consensus 345 ~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~---l~~~g~~g~~~~i~~~~-~~a~~l~~~l----~~~~~~~l~ 416 (517)
..+.... + -....+...++ ++.+..+. ++++.. ++.+++++.| .+.|.+..+
T Consensus 314 ~~~~~~~-------------t----~~~~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 373 (459)
T 4a6r_A 314 GDFNHGF-------------T----YSGHPVCAAVAHANVAALRDEG---IVQRVKDDIGPYMQKRWRETFSRFEHVDDV 373 (459)
T ss_dssp CTTHHHH-------------H----HCSCHHHHHHHHHHHHHHHHTC---HHHHHHHTHHHHHHHHHHHHHTTCTTEEEE
T ss_pred CCcccCC-------------C----CCCCHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 0000000 0 01123333333 33332233 344444 4444554444 555555444
Q ss_pred cCCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHH
Q 010125 417 FPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRH 496 (517)
Q Consensus 417 ~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~d 496 (517)
.+...++.|.+..... +..... .......++.+.+.++|.++.+. | .++|+++ +...++++
T Consensus 374 -~~~g~~~~~~~~~~~~----------~~~~~~--~~~~~~~~~~~~l~~~Gv~v~~~----g-~~iRi~~-~~~~t~e~ 434 (459)
T 4a6r_A 374 -RGVGMVQAFTLVKNKA----------KRELFP--DFGEIGTLCRDIFFRNNLIMRAC----G-DHIVSAP-PLVMTRAE 434 (459)
T ss_dssp -EEETTEEEEEECSBTT----------TTBCCS--STTHHHHHHHHHHHHTTEECEEE----T-TEEEECC-CTTCCHHH
T ss_pred -EEEEEEEEEEEecCcc----------cccccc--chHHHHHHHHHHHHHCCeEEecC----C-CEEEEEC-CCCCCHHH
Confidence 3444566666643210 000000 00123456777788888755433 2 6899997 45678889
Q ss_pred HHHHHHHHHHHHHHHHh
Q 010125 497 VVVAWTVVQQHLEAFQS 513 (517)
Q Consensus 497 i~~l~~~l~~~~~~l~~ 513 (517)
+++++++|+++.+++.+
T Consensus 435 i~~~l~~l~~~l~~~~~ 451 (459)
T 4a6r_A 435 VDEMLAVAERCLEEFEQ 451 (459)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998877654
No 209
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=99.76 E-value=3.4e-16 Score=163.57 Aligned_cols=348 Identities=10% Similarity=0.034 Sum_probs=188.4
Q ss_pred HHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhccc
Q 010125 109 FLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRE 188 (517)
Q Consensus 109 ~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~ 188 (517)
.+.+.+...+....+ ...........++.++++++++.+. ..+||+|||+||..|+.+++...... |..
T Consensus 69 ~v~~A~~~~~~~~~~--~~~~~~~~~~~~la~~l~~~~~~~~--------~v~~~~ggseA~~~al~~~~~~~~~~-g~~ 137 (452)
T 3n5m_A 69 ELAEAAYKQLQTLSY--FPMSQSHEPAIKLAEKLNEWLGGEY--------VIFFSNSGSEANETAFKIARQYYAQK-GEP 137 (452)
T ss_dssp HHHHHHHHHHTTCCC--CCTTSEEHHHHHHHHHHHHHHTSCE--------EEEEESSHHHHHHHHHHHHHHHHHTT-TCT
T ss_pred HHHHHHHHHHHhcCC--cccccCCHHHHHHHHHHHHhCCCCc--------eEEEeCchHHHHHHHHHHHHHHHHhc-CCC
Confidence 344555544443222 1122345667788899999887543 37999999999999999987542111 111
Q ss_pred CCCCeEEEeCCCCchHHHHHHHHcCCC---------CCCEEEEecCCCCC----------cccCHHHHHHHHHHhHhcCC
Q 010125 189 NISKLIVYGSDQTHCALQKAAQIVGID---------VKNFRAIKTTKSSS----------YGLSPDSLMAQINSDVEVGL 249 (517)
Q Consensus 189 ~~~~~~v~~s~~~H~s~~kaa~~~G~g---------~~~v~~vp~d~~~~----------~~~d~~~Le~~i~~~~~~g~ 249 (517)
.++.+|......|.....+....|.. ...+..+|....-. +..++++|+++|++.. ..
T Consensus 138 -~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~--~~ 214 (452)
T 3n5m_A 138 -HRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWEL--SE 214 (452)
T ss_dssp -TCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHC--GG
T ss_pred -CCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcC--CC
Confidence 13344444444454333333332321 11345555421000 1112899999997211 11
Q ss_pred cceEEEeecc-CCccccccC----hhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCC-
Q 010125 250 IPLFLCATIG-TTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFAT- 323 (517)
Q Consensus 250 ~p~~vv~t~g-tt~~G~idp----l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p- 323 (517)
.+.+|++... ++ +|.+-| +++|+++|++||+++|+|++|.++............++ ..|.++ +.|.++.+
T Consensus 215 ~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~-~~di~t--~sK~l~~G~ 290 (452)
T 3n5m_A 215 TIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDV-KPDIIT--MAKGITSAY 290 (452)
T ss_dssp GEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTC-CCSEEE--ECGGGGTTS
T ss_pred CEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccchhhhcCC-CCCEEe--ecccccCCC
Confidence 2346666666 68 998876 99999999999999999999987533221111111122 356666 45998777
Q ss_pred CcceEEEEeCchhHHhhhcC---CccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHH
Q 010125 324 LDCCCLWVKDPRALVSSLST---NPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMA 400 (517)
Q Consensus 324 ~~~g~l~~~~~~~~~~~~~~---~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a 400 (517)
++.|+++.+++ +.+.+.. ...++. ..+-...++...+++..+..-.-++++++..++.
T Consensus 291 ~~ig~~~~~~~--i~~~~~~~~~~~~~~~-----------------~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~ 351 (452)
T 3n5m_A 291 LPLSATAVKRE--IYEAFKGKGEYEFFRH-----------------INTFGGNPAACALALKNLEIIENENLIERSAQMG 351 (452)
T ss_dssp SCCEEEEEEHH--HHGGGCSSSTTCSCCC-----------------CCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred cceEEEEECHH--HHHHHhhccCCCCccc-----------------cCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 78898887543 3333322 111111 0111123344444443331100123445555566
Q ss_pred HHHHHHHh----cCCCeEEecCCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeee
Q 010125 401 KLFERLVS----GDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAV 476 (517)
Q Consensus 401 ~~l~~~l~----~~~~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~ 476 (517)
+++++.|+ +.|.+..+ ++...++.+.+..... ...... .....++.+.+.++|.++.+...
T Consensus 352 ~~l~~~L~~~~~~~~~~~~~-~~~g~~~~i~~~~~~~----------~~~~~~----~~~~~~~~~~l~~~Gv~~~~~~~ 416 (452)
T 3n5m_A 352 SLLLEQLKEEIGEHPLVGDI-RGKGLLVGIELVNDKE----------TKEPID----NDKIASVVNACKEKGLIIGRNGM 416 (452)
T ss_dssp HHHHHHHHHHHTTCTTEEEE-EESSSCEEEEEEEETT----------TTEECC----HHHHHHHHHHHHHTTEECEECTT
T ss_pred HHHHHHHHHHHhcCCCeEEE-EEEEEEEEEEEecCCc----------ccCCCC----HHHHHHHHHHHHHCCcEEeecCc
Confidence 66665554 44555443 2333444454432100 000000 12234677778888976543321
Q ss_pred --ECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 010125 477 --LGGIYAIRFATGATLTEKRHVVVAWTVVQQHLE 509 (517)
Q Consensus 477 --~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~ 509 (517)
..+..++|+++ +...++++|++++++|+++.+
T Consensus 417 ~~~~~~~~iRi~~-~~~~t~e~i~~~l~~l~~~l~ 450 (452)
T 3n5m_A 417 TTAGYNNILTLAP-PLVISSEEIAFVIGTLKTAME 450 (452)
T ss_dssp SSTTCCCEEEECC-CTTCCHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCEEEEEC-CCCCCHHHHHHHHHHHHHHHH
Confidence 11257899987 456788899999999988764
No 210
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.76 E-value=6.5e-17 Score=169.25 Aligned_cols=314 Identities=9% Similarity=-0.059 Sum_probs=185.5
Q ss_pred HHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEE-eCCCCchHHHHHHH
Q 010125 132 TELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVY-GSDQTHCALQKAAQ 210 (517)
Q Consensus 132 ~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~-~s~~~H~s~~kaa~ 210 (517)
.....+++++++++++.+.+ ..+|++|||+||..|+.+++.....+ |.. ++..|+ .....|-+..-+..
T Consensus 117 ~~~~~~L~e~la~~~~~~~~-------~v~~~~sGseA~~~Alk~a~~~~~~~-g~~--g~~~ii~~~~~yhg~~~~~~~ 186 (457)
T 3tfu_A 117 HEPAARLAKLLVDITPAGLD-------TVFFSDSGSVSVEVAAKMALQYWRGR-GLP--GKRRLMTWRGGYHGDTFLAMS 186 (457)
T ss_dssp CHHHHHHHHHHHHHSSTTEE-------EEEEESSHHHHHHHHHHHHHHHHHHT-TCT--TCCEEEEETTCCCCSSHHHHT
T ss_pred CHHHHHHHHHHHHhCCCCcC-------EEEEeCcHHHHHHHHHHHHHHHHHhc-CCC--CCceEEEEcCCcCCccHHhhc
Confidence 34455677888898876544 68999999999999999988743222 211 333444 44444443332222
Q ss_pred HcC-C---------CCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeec-cCCccccccC----hhHHHHH
Q 010125 211 IVG-I---------DVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATI-GTTAITAVDP----LKPLCDV 275 (517)
Q Consensus 211 ~~G-~---------g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~-gtt~~G~idp----l~eI~~i 275 (517)
..+ . ....+..+|....+....|+++|+++|++... .+.+|++.. .++++|.+-| +++|.++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~---~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l 263 (457)
T 3tfu_A 187 ICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAG---ELAAVVVEPVVQGAGGMRFHDPRYLHDLRDI 263 (457)
T ss_dssp TSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGG---GEEEEEECSSEECTTTCEECCTHHHHHHHHH
T ss_pred ccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCC---CEEEEEEeCCCcCCCCcccCCHHHHHHHHHH
Confidence 211 0 01134455543222234689999999985321 234677776 7788898866 9999999
Q ss_pred HHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCC-cceEEEEeCchhHHhhhcC-CccccCCccc
Q 010125 276 AKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATL-DCCCLWVKDPRALVSSLST-NPEYLKNKAT 353 (517)
Q Consensus 276 ~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~-~~g~l~~~~~~~~~~~~~~-~~~yl~~~~~ 353 (517)
|++||++|++|++|.++............++ ..|.+++ .|.++.++ ..|+++.+++ +.+.+.. .+.-+..
T Consensus 264 ~~~~gillI~DEv~~g~gr~G~~~a~~~~~~-~pdiit~--sK~l~gG~~~lG~v~~~~~--i~~~~~~~~~~~~~~--- 335 (457)
T 3tfu_A 264 CRRYEVLLIFDEIATGFGRTGALFAADHAGV-SPDIMCV--GKALTGGYLSLAATLCTAD--VAHTISAGAAGALMH--- 335 (457)
T ss_dssp HHHHTCEEEEECTTTTTTTTSSSSTHHHHTC-CCSEEEE--CGGGGTTSSCCEEEEEEHH--HHHHHHHSSSCSCCC---
T ss_pred HHHcCCEEEEEcCccCCccccchhHhHhcCC-CceEEEE--ChhhhCCCcceEEEEEcHH--HHHHhhccCCCceeE---
Confidence 9999999999999987532211111001122 4677754 69987763 7888888654 2223321 0110000
Q ss_pred cccccccCCCccccCCCCCCchHHHHH---HHHhcHHHHHHHHHHHHHHHHHHHHHHhcC---CCeEEecCCCeeEEEEE
Q 010125 354 ESMQVVDYKDWQITLSRRFRSLKLWFV---IRNYGVANLRHFLRSHVNMAKLFERLVSGD---KRFEIVFPCHFAVVCFR 427 (517)
Q Consensus 354 ~~~~~~~~~~~~~~~sr~~~al~~~~~---l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~---~~~~l~~~~~~~~v~f~ 427 (517)
..+-....+...++ ++.+..+ ++.++..++.+++++.|+++ |.+..+ .+...++.+.
T Consensus 336 -------------~~t~~~n~~a~aaa~aaL~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~v~~v-r~~G~~~~i~ 398 (457)
T 3tfu_A 336 -------------GPTFMANPLACAVSVASVELLLGQ---DWRTRITELAAGLTAGLDTARALPAVTDV-RVCGAIGVIE 398 (457)
T ss_dssp -------------CCTTTTCHHHHHHHHHHHHHHHTS---CHHHHHHHHHHHHHHHHGGGGGSTTEEEE-EECSSCEEEE
T ss_pred -------------ecCCCcCHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHhcCCCeeee-ecCCeEEEEE
Confidence 01111233433333 3333222 45666777888888888764 444433 2344566666
Q ss_pred ecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 010125 428 VSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQH 507 (517)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~ 507 (517)
+.... ...++.+.|.++|.+. .+. + .++|++. ....+++|+++++++|+++
T Consensus 399 l~~~~-----------------------~~~~~~~~l~~~Gv~v-~~~---~-~~lRi~p-~~~~t~eei~~~l~~L~~~ 449 (457)
T 3tfu_A 399 CDRPV-----------------------DLAVATPAALDRGVWL-RPF---R-NLVYAMP-PYICTPAEITQITSAMVEV 449 (457)
T ss_dssp ESSCC-----------------------CHHHHHHHHHHTTEEC-CCB---T-TEEEECC-CTTCCHHHHHHHHHHHHHH
T ss_pred ECCcc-----------------------cHHHHHHHHHHCCeEE-Eec---C-CEEEEEC-CCCCCHHHHHHHHHHHHHH
Confidence 64321 0245677777888654 321 2 5799986 3566888999999999998
Q ss_pred HHHHH
Q 010125 508 LEAFQ 512 (517)
Q Consensus 508 ~~~l~ 512 (517)
.+++.
T Consensus 450 l~~~~ 454 (457)
T 3tfu_A 450 ARLVG 454 (457)
T ss_dssp HHHC-
T ss_pred HHHhc
Confidence 87654
No 211
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.75 E-value=5.3e-16 Score=162.97 Aligned_cols=330 Identities=10% Similarity=0.035 Sum_probs=188.5
Q ss_pred hHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHH
Q 010125 131 ATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQ 210 (517)
Q Consensus 131 ~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~ 210 (517)
......++.+.++++++.+.+ ..+|++||++||..|+.++|.....+ |..+ ++.+|......|-...-+..
T Consensus 97 ~~~~~~~lae~l~~~~~~~~~-------~v~~~~sGseA~~~aik~a~~~~~~~-g~~~-~~~ii~~~~~yHg~t~~~~~ 167 (472)
T 3hmu_A 97 THVPAIALAQKLAELAPGDLN-------HVFFAGGGSEANDTNIRMVRTYWQNK-GQPE-KTVIISRKNAYHGSTVASSA 167 (472)
T ss_dssp ECHHHHHHHHHHHHHSCTTEE-------EEEEESSHHHHHHHHHHHHHHHHHHT-TCTT-CCEEEEETTCCCCSSHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCC-------EEEEeCCHHHHHHHHHHHHHHHHHhc-CCCC-CCEEEEEcCcCCCccHHhhh
Confidence 344556677788888765443 68999999999999999998753221 2110 23344444445543333333
Q ss_pred HcCC--------CCCCEEEEecCC--C-CCcccC--------HHHHHHHHHHhHhcCCcceEEEeeccCCccccccC---
Q 010125 211 IVGI--------DVKNFRAIKTTK--S-SSYGLS--------PDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDP--- 268 (517)
Q Consensus 211 ~~G~--------g~~~v~~vp~d~--~-~~~~~d--------~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idp--- 268 (517)
..|. ....+..+|... . +++ +| +++|+++|++... ..+.+|++....++.|.+-|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~~le~~i~~~~~--~~~aavi~epv~~~gG~~~~~~~ 244 (472)
T 3hmu_A 168 LGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLARARELEEAILELGE--NRVAAFIAEPVQGAGGVIVAPDS 244 (472)
T ss_dssp HSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCG--GGEEEEEECSSBSTTTCBCCCTT
T ss_pred ccCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHhcCC--CCEEEEEEcCccCCCCcccCCHH
Confidence 3221 111456666421 0 011 34 7889998874211 12456777777777888877
Q ss_pred -hhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCC-CcceEEEEeCchhHHhhhcCCcc
Q 010125 269 -LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCCLWVKDPRALVSSLSTNPE 346 (517)
Q Consensus 269 -l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p-~~~g~l~~~~~~~~~~~~~~~~~ 346 (517)
+++|.++|++||++|++|++|.++......+.....++ ..|.++++ |.++.+ +..|+++.+++ +.+.+.. .
T Consensus 245 ~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v-~pdi~t~s--K~l~gg~~plG~v~~~~~--i~~~~~~--~ 317 (472)
T 3hmu_A 245 YWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGI-RPHIMTIA--KGLSSGYAPIGGSIVCDE--VAHVIGK--D 317 (472)
T ss_dssp HHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTC-CCSEEEEC--GGGTTTSSCCEEEEEEHH--HHHHHTT--S
T ss_pred HHHHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCC-CCceeeec--hhhhcCCcceEEEEECHH--HHHhccc--C
Confidence 99999999999999999999987643221111111122 46777754 998766 57888888543 2233411 1
Q ss_pred ccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHH-HHHHHHHHHHhcC---CCeEEecCCCee
Q 010125 347 YLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHV-NMAKLFERLVSGD---KRFEIVFPCHFA 422 (517)
Q Consensus 347 yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~-~~a~~l~~~l~~~---~~~~l~~~~~~~ 422 (517)
.+.. ..+-....+...+++..+..-.-++++++.. ++.+++++.|+++ |.+..+ .+...
T Consensus 318 ~~~~----------------~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v-r~~G~ 380 (472)
T 3hmu_A 318 EFNH----------------GYTYSGHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEALTDHPLVGEA-KIVGM 380 (472)
T ss_dssp CBCC----------------CCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHHHHHGGGGSTTEEEE-EEETT
T ss_pred Cccc----------------cCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-EecCc
Confidence 1110 0111123344444443332101134556666 6777777777553 444433 23445
Q ss_pred EEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHH
Q 010125 423 VVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWT 502 (517)
Q Consensus 423 ~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~ 502 (517)
++.|.+..... +...... .......++.+.|.++|.++.+. | .++|++. ....++++++++++
T Consensus 381 ~~~i~~~~~~~----------~~~~~~~-~~~~~~~~~~~~l~~~Gv~v~~~----g-~~iRi~p-~~~~t~e~i~~~l~ 443 (472)
T 3hmu_A 381 MASIALTPNKA----------SRAKFAS-EPGTIGYICRERCFANNLIMRHV----G-DRMIISP-PLVITPAEIDEMFV 443 (472)
T ss_dssp EEEEEECSCGG----------GTCCBSS-CTTHHHHHHHHHHHHTTBCCEEE----T-TEEEECC-CTTCCHHHHHHHHH
T ss_pred eEEEEEecCcc----------ccccccc-hhHHHHHHHHHHHHHCCcEEEec----C-CEEEEEC-CCCCCHHHHHHHHH
Confidence 66676653210 0000000 00123456777888889765432 2 6899996 45678889999999
Q ss_pred HHHHHHHHHHh
Q 010125 503 VVQQHLEAFQS 513 (517)
Q Consensus 503 ~l~~~~~~l~~ 513 (517)
+|+++.+++.+
T Consensus 444 ~l~~~l~~~~~ 454 (472)
T 3hmu_A 444 RIRKSLDEAQA 454 (472)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998776653
No 212
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.75 E-value=3.9e-17 Score=168.52 Aligned_cols=232 Identities=10% Similarity=0.039 Sum_probs=156.2
Q ss_pred HHHHHHHHcCCCcccccCCCCceEE---cCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCC-CCchHHH-------
Q 010125 138 VMDWLGQMLKLPKSFLFSGNGGGVI---QGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSD-QTHCALQ------- 206 (517)
Q Consensus 138 v~~~l~~l~g~~~~~~~~~~~~g~~---t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~-~~H~s~~------- 206 (517)
+.+.+++++|.+. .++ ++|||+||..++.+..+ +++.|++++ ..|....
T Consensus 79 Le~~lA~l~g~e~---------alv~p~~~sGt~A~~~al~all~-----------pGD~Vl~~~~~~y~~~~~~~g~~~ 138 (427)
T 3hvy_A 79 LDRVYANIFNTES---------AFVRPHFVNGTHAIGAALFGNLR-----------PNDTMMSICGMPYDTLHDIIGMDD 138 (427)
T ss_dssp HHHHHHHHHTCSE---------EEEETTCCSHHHHHHHHHHHTCC-----------TTCEEEECSSSCCGGGHHHHTCCT
T ss_pred HHHHHHHHhCCCc---------eEEeCCCCcHHHHHHHHHHHhcC-----------CCCEEEEeCCCCchhHHHHhcccc
Confidence 3456778888763 355 78999999877765432 667788887 7776544
Q ss_pred ----HHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeec----cCCccccccChhHHHHHHHH
Q 010125 207 ----KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATI----GTTAITAVDPLKPLCDVAKQ 278 (517)
Q Consensus 207 ----kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~----gtt~~G~idpl~eI~~i~~~ 278 (517)
..++..|+ +++.+|.+ ++.+|+++|++++++. ..+.+|+++. +++++|.+.|+++|+++|++
T Consensus 139 ~~~~~~l~~~G~---~~~~v~~~---~~~~d~e~l~~~i~~~----~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~ 208 (427)
T 3hvy_A 139 SKKVGSLREYGV---KYKMVDLK---DGKVDINTVKEELKKD----DSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIRE 208 (427)
T ss_dssp TCCSCCTGGGTC---EEEECCCB---TTBCCHHHHHHHHHHC----TTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHH
T ss_pred chhhhHHHHcCC---EEEEecCC---CCCcCHHHHHHHhhCC----CCCEEEEEECCCCCCCCccccHHHHHHHHHHHHH
Confidence 34455688 88888872 5799999999999831 0134788888 89999999999999999999
Q ss_pred --hCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCC--CcceEEEEeCchhHHhhhcC--CccccCCcc
Q 010125 279 --FGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFAT--LDCCCLWVKDPRALVSSLST--NPEYLKNKA 352 (517)
Q Consensus 279 --~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p--~~~g~l~~~~~~~~~~~~~~--~~~yl~~~~ 352 (517)
||++++||+||+.+........ .++|+++.++||+++.+ ...|+++.+ ++... .+.. ....+
T Consensus 209 ~~~g~~livD~a~~~~~~~~~p~~------~gaDiv~~S~sK~lgg~g~~~GG~i~~~-~~li~-~l~~~~~~~~~---- 276 (427)
T 3hvy_A 209 VNENVIVFVDNCYGEFVEEKEPTD------VGADIIAGSLIKNIGGGIATTGGYIAGK-EEYVT-QATFRVTVPGI---- 276 (427)
T ss_dssp HCSSSEEEEECTTCTTTSSSCGGG------GTCSEEEEETTSGGGTTTCCSCEEEEEC-HHHHH-HHHHHHSCTTT----
T ss_pred hCCCCEEEEECCccccccCCCCcc------cCCeEEEECCcccccccccceEEEEEEC-HHHHH-HHHHHhhcCCc----
Confidence 8999999999987653221111 16899999999999863 223666664 43322 2211 11111
Q ss_pred ccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCee-----EEEEE
Q 010125 353 TESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFA-----VVCFR 427 (517)
Q Consensus 353 ~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~~~-----~v~f~ 427 (517)
....+-.+. ..|.+++ |......++++..+++.++++.|+++ ++++... ... +++|.
T Consensus 277 ------------g~~~~~~~~--~a~~~~~--gl~~~~~r~~~~~~~a~~la~~L~~~-g~~V~p~-~~~~~~~li~~~~ 338 (427)
T 3hvy_A 277 ------------GGECGSTFG--VMRSLYE--GLFMAPHVTIEAVKGAVFCARIMELA-GFDVLPK-YNDKRTDIIQAIK 338 (427)
T ss_dssp ------------GGGCCCCTT--CHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEESC-TTSCCSSSEEEEE
T ss_pred ------------ccccCCCHH--HHHHHHH--hHhHHHHHHHHHHHHHHHHHHHHHhC-CCeecCC-CCCCCceEEEEEe
Confidence 001111111 1344444 33455678899999999999999998 5677532 333 77777
Q ss_pred ec
Q 010125 428 VS 429 (517)
Q Consensus 428 ~~ 429 (517)
+.
T Consensus 339 l~ 340 (427)
T 3hvy_A 339 FN 340 (427)
T ss_dssp CS
T ss_pred CC
Confidence 74
No 213
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.75 E-value=7.2e-16 Score=160.94 Aligned_cols=330 Identities=11% Similarity=0.020 Sum_probs=177.0
Q ss_pred hHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCch-HHHHHH
Q 010125 131 ATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHC-ALQKAA 209 (517)
Q Consensus 131 ~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~-s~~kaa 209 (517)
......++.+|++++++...+ ..+|++|||+|+..|+.+++...... |.. .+..|++.+.+++ +...+.
T Consensus 85 ~~~~~~~la~~l~~~~~~~~~-------~v~~~~sGseA~~~al~~~~~~~~~~-G~~--~~~~vi~~~~~yhg~~~~~~ 154 (448)
T 3dod_A 85 TNVPATQLAETLIDISPKKLT-------RVFYSDSGAEAMEIALKMAFQYWKNI-GKP--EKQKFIAMKNGYHGDTIGAV 154 (448)
T ss_dssp EEHHHHHHHHHHHHHSCTTEE-------EEEEESSHHHHHHHHHHHHHHHHHHT-TCT--TCCEEEEEC-----------
T ss_pred CCHHHHHHHHHHHHhCCCCCC-------EEEEeCchHHHHHHHHHHHHHHHHhh-CCC--CCCEEEEECCCCCCccHHHH
Confidence 445667788999998865433 68999999999999999998743221 110 1345555555543 332232
Q ss_pred HHcCCC---------CCCEEEEecCCCCCccc-----------CHHHHHHHHHHhHhcCCcceEEEeeccC-CccccccC
Q 010125 210 QIVGID---------VKNFRAIKTTKSSSYGL-----------SPDSLMAQINSDVEVGLIPLFLCATIGT-TAITAVDP 268 (517)
Q Consensus 210 ~~~G~g---------~~~v~~vp~d~~~~~~~-----------d~~~Le~~i~~~~~~g~~p~~vv~t~gt-t~~G~idp 268 (517)
...|.. ...+..+|... .++. |+++|+++|+.... .+.+|++.... ++.|.+-+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~le~~l~~~~~---~~a~vi~ep~~~~~~G~~~~ 229 (448)
T 3dod_A 155 SVGSIELFHHVYGPLMFESYKAPIPY--VYRSESGDPDECRDQCLRELAQLLEEHHE---EIAALSIESMVQGASGMIVM 229 (448)
T ss_dssp ------------------CEEECCCC--CTTSSSCCHHHHHHHHHHHHHHHHHHHGG---GEEEEEEESSEESTTTCEEC
T ss_pred HhcCCccccccccCCCCCceEeCCCc--cccCCccchhhhhHHHHHHHHHHHHhCCC---CEEEEEEeCcccCCCCeecC
Confidence 222211 01345555432 2332 58999999973211 23456666555 77787755
Q ss_pred ----hhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCC-cceEEEEeCchhHHhhhcC
Q 010125 269 ----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATL-DCCCLWVKDPRALVSSLST 343 (517)
Q Consensus 269 ----l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~-~~g~l~~~~~~~~~~~~~~ 343 (517)
+++|.++|++||++|++|++|.++......+.....++ ..|.+++ .|.++.++ ..|+++.++. +.+.+..
T Consensus 230 ~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~-~~di~t~--sK~l~~G~~~ig~v~~~~~--~~~~~~~ 304 (448)
T 3dod_A 230 PEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENV-QPDLMAA--GKGITGGYLPIAVTFATED--IYKAFYD 304 (448)
T ss_dssp CTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEEE--CGGGGTTSSCCEEEEEEHH--HHHTTCS
T ss_pred CHHHHHHHHHHHHHhCCEEEEeccccCCCcccchhhhhhcCC-CCCEEEe--cccccCCcCceEEEEECHH--HHHHhhh
Confidence 99999999999999999999986533221111111122 3566665 59998774 8888887543 3333322
Q ss_pred CccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHh---cCCCeEEecCCC
Q 010125 344 NPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVS---GDKRFEIVFPCH 420 (517)
Q Consensus 344 ~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~---~~~~~~l~~~~~ 420 (517)
. +-... .+....+-....+...+++..+..-.-++++++..++.+++++.|+ +.|.+..+ .+.
T Consensus 305 ~--~~~~~-----------~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~ 370 (448)
T 3dod_A 305 D--YENLK-----------TFFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDLHALPHVGDI-RQL 370 (448)
T ss_dssp C--GGGCC-----------CCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEEE-EEE
T ss_pred c--cccCC-----------cccccCCCCcCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcCCCeEEE-Eee
Confidence 0 00000 0000011112334333333333110012345555556666665554 44444332 223
Q ss_pred eeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHH
Q 010125 421 FAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVA 500 (517)
Q Consensus 421 ~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l 500 (517)
..++.+.+..... ........ .....++.+.+.++|.++.+. + .++|+++ +...++++|+++
T Consensus 371 g~~~~~~~~~~~~----------~~~~~~~~--~~~~~~~~~~l~~~Gv~~~~~----~-~~iRi~~-~~~~t~e~i~~~ 432 (448)
T 3dod_A 371 GFMCGAELVRSKE----------TKEPYPAD--RRIGYKVSLKMRELGMLTRPL----G-DVIAFLP-PLASTAEELSEM 432 (448)
T ss_dssp TTEEEEEECSBTT----------TTBCCCGG--GCHHHHHHHHHHHTTEECCEE----T-TEEEECC-CTTCCHHHHHHH
T ss_pred eEEEEEEEccCcc----------cccccchh--hHHHHHHHHHHHHCCcEEecc----C-CEEEEEC-CCCCCHHHHHHH
Confidence 4455666543210 00000000 011345677777888654332 3 6899987 457788899999
Q ss_pred HHHHHHHHHHHH
Q 010125 501 WTVVQQHLEAFQ 512 (517)
Q Consensus 501 ~~~l~~~~~~l~ 512 (517)
+++|+++.+++.
T Consensus 433 l~~l~~~l~~~~ 444 (448)
T 3dod_A 433 VAIMKQAIHEVT 444 (448)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988765
No 214
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.75 E-value=5.3e-16 Score=162.11 Aligned_cols=339 Identities=12% Similarity=0.035 Sum_probs=185.6
Q ss_pred HHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhccc
Q 010125 109 FLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRE 188 (517)
Q Consensus 109 ~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~ 188 (517)
.+.+.+...+.... .+.......+...++.++++++++.+.. ...+||+|||+||..|+.+++...
T Consensus 81 ~v~~A~~~~~~~~~-~~~~~~~~~~~~~~la~~l~~~~~~~~~------~~v~~~~sGseA~~~Alk~a~~~~------- 146 (451)
T 3oks_A 81 KVVEAVRSQVGDFT-HTCFMVTPYEGYVAVCEQLNRLTPVRGD------KRSALFNSGSEAVENAVKIARSHT------- 146 (451)
T ss_dssp HHHHHHHHHHTTCS-CCTTTTSCCHHHHHHHHHHHHHSSCCSS------EEEEEESSHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHhcc-cccCCccCCHHHHHHHHHHHHhCCcCCC------CEEEEeCcHHHHHHHHHHHHHHhc-------
Confidence 34444444443321 2222223455666788899998864321 268999999999999999887641
Q ss_pred CCCCeEEE-eCCCCchHHHHHHHHcCCC----------CCCEEEEecCCC--------CC---cccCHHHHHHHHHHhHh
Q 010125 189 NISKLIVY-GSDQTHCALQKAAQIVGID----------VKNFRAIKTTKS--------SS---YGLSPDSLMAQINSDVE 246 (517)
Q Consensus 189 ~~~~~~v~-~s~~~H~s~~kaa~~~G~g----------~~~v~~vp~d~~--------~~---~~~d~~~Le~~i~~~~~ 246 (517)
++..|+ .....|-...-+....|-. ...++.+|.... +. ..-+++.+++.|++..
T Consensus 147 --g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~- 223 (451)
T 3oks_A 147 --HKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQI- 223 (451)
T ss_dssp --CCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHT-
T ss_pred --CCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhc-
Confidence 333444 4444453333333332210 115677776410 00 0123555556665421
Q ss_pred cCCcceEEEeeccCCccccccC----hhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCC
Q 010125 247 VGLIPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFA 322 (517)
Q Consensus 247 ~g~~p~~vv~t~gtt~~G~idp----l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~ 322 (517)
....+.+|++...+++.|.+-| +++|.++|++||+++++|++|.++............++ ..|.+++ .|.++.
T Consensus 224 ~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~-~pdi~t~--sK~l~~ 300 (451)
T 3oks_A 224 GADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGI-DPDLIVT--AKGIAG 300 (451)
T ss_dssp CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEEE--CGGGGT
T ss_pred CCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCC-CCCeeee--hhhhhC
Confidence 1123445666655656677765 99999999999999999999986533221111111122 4566654 599988
Q ss_pred CCcceEEEEeCchhHHhhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHH
Q 010125 323 TLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKL 402 (517)
Q Consensus 323 p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~ 402 (517)
++..|+++.++. +.+.+... . . ..+-....+...+++..+..-.-++++++..++.++
T Consensus 301 G~~iG~v~~~~~--~~~~~~~~---~-~----------------~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~ 358 (451)
T 3oks_A 301 GLPLSAVTGRAE--IMDSPHVS---G-L----------------GGTYGGNPIACAAALATIETIESEGLVARAQQIEKI 358 (451)
T ss_dssp TSSCEEEEEEHH--HHTCSCTT---S-B----------------CCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred CcceEEEEECHH--HHhhhcCC---C-c----------------CCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 788998877532 22222110 0 0 011112334444444333110012345555556666
Q ss_pred HHHHHh----cCCCeEEecCCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeEC
Q 010125 403 FERLVS----GDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLG 478 (517)
Q Consensus 403 l~~~l~----~~~~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~ 478 (517)
+++.|+ +.|.+..+ .+...++.+.+..... ... . .....++.+.+.++|.++.+...+
T Consensus 359 l~~~L~~~~~~~~~~~~~-~~~G~~~~~~~~~~~~-----------~~~-~----~~~~~~~~~~l~~~Gv~v~~~~~~- 420 (451)
T 3oks_A 359 MKDRLGRLQAEDDRIGDV-RGRGAMIAMELVKAGT-----------TEP-D----ADLTKALCAGAHAAGVIVLSCGTY- 420 (451)
T ss_dssp HHHHHHHHHHHCTTEEEE-EEETTEEEEEEBSTTS-----------CCB-C----HHHHHHHHHHHHHTTEECEEECTT-
T ss_pred HHHHHHHHHhhCCCeEEE-EEeeEEEEEEEecCcc-----------CCC-C----HHHHHHHHHHHHhCCcEEecCCCC-
Confidence 665554 45555433 2334466666643100 000 0 233466778888889765443221
Q ss_pred CEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 010125 479 GIYAIRFATGATLTEKRHVVVAWTVVQQHLE 509 (517)
Q Consensus 479 g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~ 509 (517)
..++|+++ +...+++++++++++|.++.+
T Consensus 421 -~~~iRi~~-~~~~t~e~i~~~l~~l~~~l~ 449 (451)
T 3oks_A 421 -GNVVRFLP-PLSIGDDLLNEGLDVLEEVLR 449 (451)
T ss_dssp -SCEEEECC-CTTCCHHHHHHHHHHHHHHHH
T ss_pred -CCEEEEEC-CCCCCHHHHHHHHHHHHHHHh
Confidence 25799987 456688899999999988765
No 215
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=99.74 E-value=3.6e-16 Score=163.51 Aligned_cols=320 Identities=13% Similarity=0.048 Sum_probs=177.0
Q ss_pred hhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHH
Q 010125 130 AATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAA 209 (517)
Q Consensus 130 ~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa 209 (517)
...+...+++++++++++.+.. ...+||+|||+||..|+..+|... | ++.+|......|-...-+.
T Consensus 104 ~~~~~~~~la~~l~~~~~~~~~------~~v~~~~sGseA~~~alk~a~~~~----g----~~~ii~~~~~yhg~~~~~~ 169 (453)
T 4ffc_A 104 TPYEQYVQVAELLNALTPGDHD------KRTALFNSGAEAVENAIKVARLAT----G----RPAVVAFDNAYHGRTNLTM 169 (453)
T ss_dssp SCCHHHHHHHHHHHHHSSCSSC------EEEEEESSHHHHHHHHHHHHHHHH----C----CCEEEEETTCCCCSSHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCCCC------cEEEEeCcHHHHHHHHHHHHHHhc----C----CCEEEEEcCccCCcchHHH
Confidence 3456667788999999874321 268999999999999998887531 1 2334444444554444443
Q ss_pred HHcCCC----------CCCEEEEecCCC--CCcccC--------HHHHHHHHHHhHhcCCcceEEEeeccCCccccccC-
Q 010125 210 QIVGID----------VKNFRAIKTTKS--SSYGLS--------PDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDP- 268 (517)
Q Consensus 210 ~~~G~g----------~~~v~~vp~d~~--~~~~~d--------~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idp- 268 (517)
...|.. ...+..+|.... +.+.++ .++|++++... .+.+|++...+...|.+-|
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~-----~~aavi~ep~~~~gG~~~~~ 244 (453)
T 4ffc_A 170 ALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQ-----SLAAIIIEPIQGEGGFIVPA 244 (453)
T ss_dssp HHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGG-----GEEEEEECSSBTTTTSBCCC
T ss_pred hhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCC-----CEEEEEEcCCCCCCCcccCC
Confidence 333321 114667776410 011122 33444433221 2345555555555566755
Q ss_pred ---hhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCc
Q 010125 269 ---LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNP 345 (517)
Q Consensus 269 ---l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~ 345 (517)
+++|.++|++||+++++|++|.++............++ ..|.+++ .|.++.++..|+++.++. +.+.+...
T Consensus 245 ~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~-~pdi~t~--sK~~~~G~~~G~~~~~~~--i~~~~~~~- 318 (453)
T 4ffc_A 245 PGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGI-VPDIVTM--AKGIAGGMPLSAVTGRAE--LMDAVYAG- 318 (453)
T ss_dssp TTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTC-CCSEEEE--CGGGGTTSSCEEEEEEHH--HHTTSCTT-
T ss_pred HHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCC-CcchHhh--hhhhcCCcCeEEEEECHH--HHhhhccc-
Confidence 99999999999999999999977533221111001122 4566665 599987788998877533 22222110
Q ss_pred cccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHh----cCCCeEEecCCCe
Q 010125 346 EYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVS----GDKRFEIVFPCHF 421 (517)
Q Consensus 346 ~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~----~~~~~~l~~~~~~ 421 (517)
. . ..+-....+...+++..+..-.-++++++..++.+++++.|+ +.|.+..+ .+..
T Consensus 319 --~-~----------------~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g 378 (453)
T 4ffc_A 319 --G-L----------------GGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEV-RGRG 378 (453)
T ss_dssp --S-S----------------CCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEEEE-EEET
T ss_pred --C-c----------------CCCCCcCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEE-Eeec
Confidence 0 0 011112334444443333110012344455555555555554 45555433 2334
Q ss_pred eEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHH
Q 010125 422 AVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAW 501 (517)
Q Consensus 422 ~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~ 501 (517)
.++.+.+..... .... .....++.+.+.++|.++.+... . ..++|+++ +...+++++++++
T Consensus 379 ~~~~~~~~~~~~-------------~~~~---~~~~~~~~~~l~~~Gv~v~~~~~-~-~~~iRi~~-~~~~t~e~i~~~l 439 (453)
T 4ffc_A 379 AMLAIEIVKPGT-------------LEPD---AALTKSIAAEALSQGVLILTCGT-F-GNVIRLLP-PLVIGDDLLDEGI 439 (453)
T ss_dssp TEEEEEEBCTTS-------------CCBC---HHHHHHHHHHHHHTTEECCEECT-T-SCEEEECC-CTTCCHHHHHHHH
T ss_pred eEEEEEEecCcc-------------cCCC---HHHHHHHHHHHHhCCCEEecCCC-C-CCEEEEEC-CCCCCHHHHHHHH
Confidence 456666543100 0000 23356777888888975544322 1 25799987 4567888999999
Q ss_pred HHHHHHHHHHHh
Q 010125 502 TVVQQHLEAFQS 513 (517)
Q Consensus 502 ~~l~~~~~~l~~ 513 (517)
++|+++.+++.+
T Consensus 440 ~~l~~~l~~~~~ 451 (453)
T 4ffc_A 440 TALSDIIRAKAS 451 (453)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHh
Confidence 999999887654
No 216
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.73 E-value=2.2e-16 Score=164.96 Aligned_cols=313 Identities=9% Similarity=-0.022 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHHHcC-CCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHH---hcccCCCCeEEEeCCCCchH-HHH
Q 010125 133 ELENIVMDWLGQMLK-LPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNK---IGRENISKLIVYGSDQTHCA-LQK 207 (517)
Q Consensus 133 ~lE~~v~~~l~~l~g-~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~---~g~~~~~~~~v~~s~~~H~s-~~k 207 (517)
....++.+.++++++ .+.+ ..+|++|||+||..|+.+++.....+ .|..+.++..|++.+.+|+. ..-
T Consensus 101 ~~~~~la~~la~~~~~~~~~-------~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~ 173 (449)
T 2cjg_A 101 VAMARFVETFARVLGDPALP-------HLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGY 173 (449)
T ss_dssp HHHHHHHHHHHHHHCCTTCC-------EEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTT
T ss_pred HHHHHHHHHHHHhcCCCCCC-------EEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccc
Confidence 344456666777776 2222 68999999999999998886432111 01111124456655554432 221
Q ss_pred HHHH--------cCCC--CCCEEEEecCC--CCC------cccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccC-
Q 010125 208 AAQI--------VGID--VKNFRAIKTTK--SSS------YGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDP- 268 (517)
Q Consensus 208 aa~~--------~G~g--~~~v~~vp~d~--~~~------~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idp- 268 (517)
+... .|.+ ...++.+|.+. ... ...++++|+++|++.. ..+.+|+++..++++|.+-+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~---~~~~~vi~ep~~~~~G~~~~~ 250 (449)
T 2cjg_A 174 TLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRP---HDIACFVAEPIQGEGGDRHFR 250 (449)
T ss_dssp GGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHST---TTEEEEEECSEETTTTCEECC
T ss_pred hhhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcC---CceEEEEEeCcCCCCCCccCC
Confidence 1111 1221 12567777642 110 1357778999886421 12346777666778897766
Q ss_pred ---hhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCc
Q 010125 269 ---LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNP 345 (517)
Q Consensus 269 ---l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~ 345 (517)
+++|.++|++||+++|+|++|+++......+.....++ ..|.+++ .|++ | +|++++++. . .+.+. +
T Consensus 251 ~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~-~~di~t~--sK~l--~--iG~~~~~~~-~-~~~l~--~ 319 (449)
T 2cjg_A 251 PEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDV-APDIVAF--GKKT--Q--VCGVMAGRR-V-DEVAD--N 319 (449)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTC-CCSEEEE--CGGG--S--SEEEEECGG-G-GGSTT--C
T ss_pred HHHHHHHHHHHHHCCcEEEEeccccCCCccCcceeecccCC-CceEEEe--cCcc--c--EEEEEECHH-H-hhhhh--h
Confidence 99999999999999999999986533211111001122 4677665 5998 4 788887653 2 22111 0
Q ss_pred cccCCccccccccccCCCccccCCCCCCchHHH---HHHHHhcHHHHHHHHHHHHHHHHHHHHHHhc----CCC-eEEec
Q 010125 346 EYLKNKATESMQVVDYKDWQITLSRRFRSLKLW---FVIRNYGVANLRHFLRSHVNMAKLFERLVSG----DKR-FEIVF 417 (517)
Q Consensus 346 ~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~---~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~----~~~-~~l~~ 417 (517)
.++.... ...+ -....+... ++++.+.. +++.++..++++++.+.|++ .|. +..+
T Consensus 320 ~~~~~~~---------~~~t----~~~n~~~~~aa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~- 382 (449)
T 2cjg_A 320 VFAVPSR---------LNST----WGGNLTDMVRARRILEVIEA---EGLFERAVQHGKYLRARLDELAADFPAVVLDP- 382 (449)
T ss_dssp TTTSTTS---------SCCS----SSSCHHHHHHHHHHHHHHHH---HTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEE-
T ss_pred cccCCcc---------cccC----CCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhhCCCceeeE-
Confidence 0110000 0001 111233333 34443322 34567777788888888865 354 5433
Q ss_pred CCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHH
Q 010125 418 PCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHV 497 (517)
Q Consensus 418 ~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di 497 (517)
++..+++.|.+... ....++.+.|.++|.+.... |..++|+++ +..+++++|
T Consensus 383 ~~~g~~~~~~~~~~-----------------------~~~~~~~~~l~~~Gv~v~~~----g~~~iRi~~-~~~~t~e~i 434 (449)
T 2cjg_A 383 RGRGLMCAFSLPTT-----------------------ADRDELIRQLWQRAVIVLPA----GADTVRFRP-PLTVSTAEI 434 (449)
T ss_dssp EEETTEEEEECSSH-----------------------HHHHHHHHHHHHTTEECEEE----TTTEEEECC-CTTCCHHHH
T ss_pred eeccEEEEEEECCh-----------------------HHHHHHHHHHHHCCeEEecC----CCCEEEEEC-CCCCCHHHH
Confidence 34455666655321 12356777777778654332 346899987 567789999
Q ss_pred HHHHHHHHHHHHHH
Q 010125 498 VVAWTVVQQHLEAF 511 (517)
Q Consensus 498 ~~l~~~l~~~~~~l 511 (517)
++++++|+++.+++
T Consensus 435 ~~~l~~l~~~l~~~ 448 (449)
T 2cjg_A 435 DAAIAAVRSALPVV 448 (449)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887654
No 217
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.73 E-value=1.5e-16 Score=165.19 Aligned_cols=309 Identities=12% Similarity=0.019 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHHcCC
Q 010125 135 ENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQIVGI 214 (517)
Q Consensus 135 E~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~ 214 (517)
..++.+.++++++ ..+ ..+|++|||+||..|+.+++... + ++.+|......|.+...+....|.
T Consensus 95 ~~~l~~~la~~~~-~~~-------~v~~~~~Gsea~~~ai~~a~~~~----~----~~~vi~~~~~yhg~~~~~~~~~g~ 158 (429)
T 3k28_A 95 ENKLAKLVIERVP-SIE-------IVRMVNSGTEATMSALRLARGYT----G----RNKILKFIGCYHGHGDSLLIKAGS 158 (429)
T ss_dssp HHHHHHHHHHHST-TCS-------EEEEESSHHHHHHHHHHHHHHHH----T----CCEEEEEETCCCCSCGGGCSSCCT
T ss_pred HHHHHHHHHHhCC-CCC-------EEEEeCChHHHHHHHHHHHHHhh----C----CCEEEEECCCcCCCcHHHHHhcCC
Confidence 3445566677665 222 68999999999999999887631 1 233444444455433333322332
Q ss_pred CCC----------------CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccC----hhHHHH
Q 010125 215 DVK----------------NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDP----LKPLCD 274 (517)
Q Consensus 215 g~~----------------~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idp----l~eI~~ 274 (517)
+.. .++.+|.+ |+++|++++++... .+.+|++...++++|.+.| +++|.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------d~~~le~~l~~~~~---~~~~vi~ep~~~~~G~~~~~~~~l~~l~~ 228 (429)
T 3k28_A 159 GVATLGLPDSPGVPEGVAKNTITVAYN-------DLESVKYAFEQFGD---DIACVIVEPVAGNMGVVPPQPGFLEGLRE 228 (429)
T ss_dssp TC-----CCCTTCCHHHHTTEEEEETT-------CHHHHHHHHHHHGG---GEEEEEECSSBCTTSCBCCCTTHHHHHHH
T ss_pred cccccCCCCcCCCCCcccCceeecCCC-------CHHHHHHHHHhCCC---CEEEEEEcCCCCCCCcccCCHHHHHHHHH
Confidence 110 22222221 89999999975321 2346777777777888888 999999
Q ss_pred HHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCccccCCcccc
Q 010125 275 VAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATE 354 (517)
Q Consensus 275 i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~ 354 (517)
+|++||+++|+|++|.++ ...........++ ..|.++ +.|.++.++..|+++.++. +.+.+.......
T Consensus 229 l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~-~~di~t--~sK~~~~G~~iG~~~~~~~--~~~~~~~~~~~~------ 296 (429)
T 3k28_A 229 VTEQNGALLIFDEVMTGF-RVAYNCGQGYYGV-TPDLTC--LGKVIGGGLPVGAYGGKAE--IMRQVAPSGPIY------ 296 (429)
T ss_dssp HHHHHTCEEEEECTTTTT-TSSTTHHHHHHTC-CCSEEE--ECGGGGTTSCCEEEEECHH--HHTTBTTTSSBC------
T ss_pred HHHHcCCEEEEecccccc-ccCcchHHHHhCC-CCceeh--hhhhhcCCCCeEEEEEcHH--HHhhhccCCCcc------
Confidence 999999999999999765 2211110001122 356665 5699988788998887542 222222110000
Q ss_pred ccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC----CCeEEecCCCeeEEEEEecC
Q 010125 355 SMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGD----KRFEIVFPCHFAVVCFRVSP 430 (517)
Q Consensus 355 ~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~----~~~~l~~~~~~~~v~f~~~~ 430 (517)
...+.....+...+++..+.... ++++++..++++++++.|+++ +.+..+ ++..+++.|.+..
T Consensus 297 -----------~~~t~~~~~~a~aaa~aal~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~~~~~~ 363 (429)
T 3k28_A 297 -----------QAGTLSGNPLAMAAGYETLVQLT-PESYVEFERKAEMLEAGLRKAAEKHGIPHHI-NRAGSMIGIFFTD 363 (429)
T ss_dssp -----------CCCTTTTCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEE-EEETTEEEEESSS
T ss_pred -----------ccCCCCCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEE-EeeccEEEEEEec
Confidence 00111223444444444432111 567777777888888877653 332222 2334556666543
Q ss_pred CCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 010125 431 SPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHLEA 510 (517)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~ 510 (517)
.....+... . ..+ .....++.+.|.++|.++.+. +...+|+++ ..+++++++++++|+++.++
T Consensus 364 ~~~~~~~~~-----~-~~~----~~~~~~~~~~l~~~Gv~v~~~----~~~~~r~~~---~~t~e~i~~~l~~l~~~l~~ 426 (429)
T 3k28_A 364 EPVINYDAA-----K-SSN----LQFFAAYYREMVEQGVFLPPS----QFEGLFLST---VHSDADIEATIAAAEIAMSK 426 (429)
T ss_dssp SCCCSHHHH-----T-TSC----HHHHHHHHHHHHHTTEECCSS----TTSCBCCCT---TCCHHHHHHHHHHHHHHHHT
T ss_pred CCccccccc-----c-ccc----HHHHHHHHHHHHHCCeEEecC----CCCCEEEEC---CCCHHHHHHHHHHHHHHHHH
Confidence 210000000 0 000 223466777788888654322 234577753 56888999999999988765
Q ss_pred H
Q 010125 511 F 511 (517)
Q Consensus 511 l 511 (517)
+
T Consensus 427 ~ 427 (429)
T 3k28_A 427 L 427 (429)
T ss_dssp C
T ss_pred H
Confidence 4
No 218
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.73 E-value=2.4e-16 Score=163.81 Aligned_cols=309 Identities=10% Similarity=0.010 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCC-chHHHHHHHHc
Q 010125 134 LENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQT-HCALQKAAQIV 212 (517)
Q Consensus 134 lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~-H~s~~kaa~~~ 212 (517)
...++.+++++.++ ..+ ..+|++|||+|+..|+.+++... ++..|++.+.+ |.....+....
T Consensus 96 ~~~~l~~~la~~~~-~~~-------~v~~~~sGsea~~~ai~~a~~~~---------~~~~vi~~~~~yhg~~~~~~~~~ 158 (434)
T 3l44_A 96 LEVKFAKMLKEAMP-ALD-------KVRFVNSGTEAVMTTIRVARAYT---------GRTKIMKFAGCYHGHSDLVLVAA 158 (434)
T ss_dssp HHHHHHHHHHHHCT-TCS-------EEEEESSHHHHHHHHHHHHHHHH---------CCCEEEEETTCCCCSSGGGGBC-
T ss_pred HHHHHHHHHHHhCC-CCC-------EEEEeCchHHHHHHHHHHHHHhh---------CCCEEEEEcCccCCCcHHHHhhc
Confidence 34455667777775 222 68999999999999999887631 33345544444 43332222222
Q ss_pred CCCC----------------CCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccC----hhHH
Q 010125 213 GIDV----------------KNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDP----LKPL 272 (517)
Q Consensus 213 G~g~----------------~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idp----l~eI 272 (517)
|.+. ..++.+|.+ |+++|++++++... ...+|+++..++++|.+.| +++|
T Consensus 159 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------d~~~le~~l~~~~~---~~~~vi~ep~~~~~G~~~~~~~~l~~l 228 (434)
T 3l44_A 159 GSGPSTLGTPDSAGVPQSIAQEVITVPFN-------NVETLKEALDKWGH---EVAAILVEPIVGNFGIVEPKPGFLEKV 228 (434)
T ss_dssp ------CCCBSSTTCCHHHHTTEEEECTT-------CHHHHHHHHHHHGG---GEEEEEECSSBCTTSCBCCCTTHHHHH
T ss_pred CCcccccCCCCcCCCCCcCCCceEecCcc-------cHHHHHHHHHhCCC---CEEEEEEcCCCCCCCCccCCHHHHHHH
Confidence 2210 023333321 89999999975321 2346777766777888887 9999
Q ss_pred HHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCccccCCcc
Q 010125 273 CDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKA 352 (517)
Q Consensus 273 ~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~ 352 (517)
.++|++||++||+|++|.++ ...........++ ..|.++ +.|.++++++.|+++.++ +. .+.+........
T Consensus 229 ~~l~~~~~illI~DEv~~g~-~~g~~~~~~~~~~-~~di~t--~sK~~~~G~~iG~~~~~~-~i-~~~~~~~~~~~~--- 299 (434)
T 3l44_A 229 NELVHEAGALVIYDEVITAF-RFMYGGAQDLLGV-TPDLTA--LGKVIGGGLPIGAYGGKK-EI-MEQVAPLGPAYQ--- 299 (434)
T ss_dssp HHHHHTTTCEEEEECTTTTT-TSSSSCHHHHHTC-CCSEEE--EEGGGGTTSSCEEEEECH-HH-HTTBTTTSSBCC---
T ss_pred HHHHHHcCCEEEEeccccce-eccccHHHHHcCC-CCCeee--hhhhhcCCcCeeeEEEcH-HH-HHhhccCCCccc---
Confidence 99999999999999999876 3221110001122 356655 459998888899987643 32 222221100000
Q ss_pred ccccccccCCCccccCCCCCCchHHHH---HHHHhcHHHHHHHHHHHHHHHHHHHHHHhc----CCCeEEecCCCeeEEE
Q 010125 353 TESMQVVDYKDWQITLSRRFRSLKLWF---VIRNYGVANLRHFLRSHVNMAKLFERLVSG----DKRFEIVFPCHFAVVC 425 (517)
Q Consensus 353 ~~~~~~~~~~~~~~~~sr~~~al~~~~---~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~----~~~~~l~~~~~~~~v~ 425 (517)
..+.....+...+ +++.+.. ++++++..++.+++++.|++ .+.+..+ ++..+++.
T Consensus 300 --------------~~t~~~~~~a~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~ 361 (434)
T 3l44_A 300 --------------AGTMAGNPASMASGIACLEVLQQ---EGLYEKLDELGATLEKGILEQAAKHNIDITL-NRLKGALT 361 (434)
T ss_dssp --------------CCTTTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEE-EEETTEEE
T ss_pred --------------CCCCCcCHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHHHHHHHhCCCCEEE-EeeccEEE
Confidence 0111123333333 3333322 34556666677777776654 3332222 23445666
Q ss_pred EEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHH
Q 010125 426 FRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQ 505 (517)
Q Consensus 426 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~ 505 (517)
+.+.......... ....-.....++.+.|.++|+++.+. +...+|++ ...+++|+++++++|+
T Consensus 362 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~~~Gv~v~~~----~~~~~rl~---~~~t~e~i~~~l~~l~ 424 (434)
T 3l44_A 362 VYFTTNTIEDYDA----------AQDTDGEMFGKFFKLMLQEGVNLAPS----KYEAWFLT---TEHTKEDIEYTIEAVG 424 (434)
T ss_dssp EEESSSCCCSHHH----------HHHSCHHHHHHHHHHHHHTTEECCSS----TTCCEECC---TTCCHHHHHHHHHHHH
T ss_pred EEEecCcccchhh----------ccccCHHHHHHHHHHHHHCCeEEeec----CCCcEEEe---cccCHHHHHHHHHHHH
Confidence 6664321100000 00000123456777788888654322 22457775 3568889999999999
Q ss_pred HHHHHHHh
Q 010125 506 QHLEAFQS 513 (517)
Q Consensus 506 ~~~~~l~~ 513 (517)
++.+++.+
T Consensus 425 ~~l~~~~~ 432 (434)
T 3l44_A 425 RAFAALAD 432 (434)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99887754
No 219
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.72 E-value=3.7e-17 Score=169.43 Aligned_cols=236 Identities=12% Similarity=0.028 Sum_probs=158.1
Q ss_pred HHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCC-CCchHHHHHHHH--
Q 010125 135 ENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSD-QTHCALQKAAQI-- 211 (517)
Q Consensus 135 E~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~-~~H~s~~kaa~~-- 211 (517)
.+++.+++++++|.+... .-++++|||+||..++.+... +++.|+++. ..|.++...+.+
T Consensus 67 ~~~l~~~la~~~g~~~~~------~~i~~~sGt~Ai~~al~al~~-----------~Gd~Vl~~~~~~y~~~~~~~~l~g 129 (431)
T 3ht4_A 67 RDTLEKVYADVFGAEAGL------VRPQIISGTHAISTALFGILR-----------PGDELLYITGKPYDTLEEIVGVRG 129 (431)
T ss_dssp HHHHHHHHHHHTTCSEEC------CBTTSCSHHHHHHHHHHTTCC-----------TTCEEEECSSSCCTTHHHHTTSSS
T ss_pred HHHHHHHHHHHhCCCccc------ccceeeCHHHHHHHHHHHhCC-----------CCCEEEEeCCCCchhHHHHHhhcc
Confidence 556778899999987542 112244779999887765422 556677777 889888876643
Q ss_pred --------cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeec----cCCccccccChhHHHHHHHH-
Q 010125 212 --------VGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATI----GTTAITAVDPLKPLCDVAKQ- 278 (517)
Q Consensus 212 --------~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~----gtt~~G~idpl~eI~~i~~~- 278 (517)
.|+ +++.+|.++ ++.+|+++|+++|++++ .+|+++. +++.+|.++++++|+++|++
T Consensus 130 ~~~~~~~~~G~---~~~~v~~~~--~~~~d~e~l~~~l~~~t------k~V~i~~sp~np~~~~~~~~~l~~i~~la~~~ 198 (431)
T 3ht4_A 130 KGVGSFKEYNI---GYNAVPLTE--GGLVDFEAVAAAIHSNT------KMIGIQRSKGYATRPSFTISQIKEMIAFVKEI 198 (431)
T ss_dssp CSSSCSGGGTC---EEEECCBCT--TSSBCHHHHHHHCCTTE------EEEEEECSCTTSSSCCCCHHHHHHHHHHHHHH
T ss_pred cccchHHHcCC---EEEEeCCCC--CCCcCHHHHHhhcCCCC------eEEEEECCCCCCCCCcCCHHHHHHHHHHHHhh
Confidence 677 899999875 47999999999997644 3677775 77778888999999999999
Q ss_pred -hCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCC---CCcceEEEEeCchhHHhhhcC--CccccCCcc
Q 010125 279 -FGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFA---TLDCCCLWVKDPRALVSSLST--NPEYLKNKA 352 (517)
Q Consensus 279 -~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~---p~~~g~l~~~~~~~~~~~~~~--~~~yl~~~~ 352 (517)
||++++||++|+.+....... . .++|.++.++||+++. |.| |+++.+ ++... .+.. ....+.
T Consensus 199 ~~~~~livDea~~~~~~~~~~~-~-----~g~Di~~~S~sK~lgg~~~~~G-G~v~~~-~~li~-~l~~~~~~~~~g--- 266 (431)
T 3ht4_A 199 KPDVVVFVDNCYGEFIEEQEPC-H-----VGADLMAGSLIKNPGGGIVKTG-GYIVGK-EQYVE-ACAYRLTSPGIG--- 266 (431)
T ss_dssp CTTCEEEEECTTCTTSSSCCGG-G-----TTCSEEEEETTSGGGTTTCSSC-EEEEEC-HHHHH-HHHHHHSCTTTT---
T ss_pred CCCCEEEEeCCChhhccCCCcc-c-----cCCeEEEcCccccCCCCCCCce-EEEEec-HHHHH-HHHHHhccCCcc---
Confidence 999999999998876432211 1 1589999999999765 444 777665 33222 2211 111110
Q ss_pred ccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCee-----EEEEE
Q 010125 353 TESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFA-----VVCFR 427 (517)
Q Consensus 353 ~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~~~~~~-----~v~f~ 427 (517)
...+-.+.. .|.+++ +.+.+..++++..++++++++.|++. ++++... ... ++.+.
T Consensus 267 -------------~~~~~~~~~--~~~~~~--~l~~~~~~~~~~~~~a~~l~~~L~~~-g~~v~p~-~~~~~~~li~~i~ 327 (431)
T 3ht4_A 267 -------------AEAGASLYS--LQEMYQ--GFFLAPHVAGQALKGAIFTAAFLEKL-GMNTSPA-WNAPRTDLIQSVQ 327 (431)
T ss_dssp -------------TSCSCCCSC--SHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH-TCCEESC-TTSCCSSSCCEEE
T ss_pred -------------cccCccHHH--HHHHHh--HhhhHHHHHHHHHHHHHHHHHHHHhC-cCEecCC-CCCCCccEEEEEE
Confidence 011111111 122332 33455778889999999999999987 5666432 222 56666
Q ss_pred ec
Q 010125 428 VS 429 (517)
Q Consensus 428 ~~ 429 (517)
+.
T Consensus 328 l~ 329 (431)
T 3ht4_A 328 FD 329 (431)
T ss_dssp CC
T ss_pred eC
Confidence 64
No 220
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.72 E-value=3e-16 Score=162.70 Aligned_cols=311 Identities=11% Similarity=-0.026 Sum_probs=173.1
Q ss_pred hHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHH
Q 010125 131 ATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQ 210 (517)
Q Consensus 131 ~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~ 210 (517)
......++.+++++.++ +.+ ..++++|||+|+..|+..++... + ++.+|......|.....+..
T Consensus 90 ~~~~~~~la~~l~~~~~-~~~-------~v~~~~ggsea~~~al~~a~~~~----~----~~~vi~~~~~yhg~~~~~~~ 153 (427)
T 3fq8_A 90 PCALENVLAEMVNDAVP-SIE-------MVRFVNSGTEACMAVLRIMRAYT----G----RDKIIKFEGCYHGHADMFLV 153 (427)
T ss_dssp CCHHHHHHHHHHHHHST-TCS-------EEEEESSHHHHHHHHHHHHHHHH----C----CCEEEEEETCCCCSCGGGCS
T ss_pred CCHHHHHHHHHHHHhCC-CCC-------EEEEeCCHHHHHHHHHHHHHHhh----C----CCEEEEECCCcCCCCHHHHH
Confidence 34566778889999887 332 68999999999999998876531 1 23344444444432221111
Q ss_pred HcCCCC----------------CCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccC----hh
Q 010125 211 IVGIDV----------------KNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDP----LK 270 (517)
Q Consensus 211 ~~G~g~----------------~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idp----l~ 270 (517)
..|.+. ..++.+|.+ |+++|++++++.. ..+.+|+++..++++|.+.| ++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------d~~~le~~l~~~~---~~~~~vi~~p~~~~~G~~~~~~~~l~ 223 (427)
T 3fq8_A 154 KAGSGVATLGLPSSPGVPKKTTANTLTTPYN-------DLEAVKALFAENP---GEIAGVILEPIVGNSGFIVPDAGFLE 223 (427)
T ss_dssp SCCTHHHHHTCCSCSSSCHHHHTTEEEEETT-------CHHHHHHHHHHST---TTEEEEEECSSBCTTSCBCCCTTHHH
T ss_pred hcCCcccccCCCCCCCCCCcccCceeecCCC-------CHHHHHHHHHhCC---CCEEEEEEcCCcCCCCCcCCCHHHHH
Confidence 111100 024444431 8999999997632 23457777777788899988 99
Q ss_pred HHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCccccCC
Q 010125 271 PLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKN 350 (517)
Q Consensus 271 eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl~~ 350 (517)
+|.++|++||+++++|++|+++ ...........++ ..|.++++ |.++..+..|+++.+ ++. .+.+.....+..
T Consensus 224 ~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~-~~di~t~s--K~~~~G~~~G~~~~~-~~~-~~~~~~~~~~~~- 296 (427)
T 3fq8_A 224 GLREITLEHDALLVFDEVITGF-RIAYGGVQEKFGV-TPDLTTLG--KIIGGGLPVGAYGGK-REI-MQLVAPAGPMYQ- 296 (427)
T ss_dssp HHHHHHHHTTCEEEEECTTTBT-TTBTTHHHHHTTC-CCSEEEEC--GGGGTTSSCEEEEEC-HHH-HTTBTTTSSBCC-
T ss_pred HHHHHHHHcCCEEEEecccccc-ccCcchhhHhcCC-CCChhhhh--hhhhCCcceEEEEEc-HHH-HHhhccCCCccc-
Confidence 9999999999999999999865 2221111111122 35666554 999876779988764 332 222321111110
Q ss_pred ccccccccccCCCccccCCCCCCchHHHHH---HHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC---CeEEecCCCeeEE
Q 010125 351 KATESMQVVDYKDWQITLSRRFRSLKLWFV---IRNYGVANLRHFLRSHVNMAKLFERLVSGDK---RFEIVFPCHFAVV 424 (517)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~sr~~~al~~~~~---l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~---~~~l~~~~~~~~v 424 (517)
..+-....+...++ ++.+.. ++++++..++.+++++.|++.. ++.........++
T Consensus 297 ----------------~~t~~~~~~~~aa~~aal~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~ 357 (427)
T 3fq8_A 297 ----------------AGTLSGNPLAMTAGIKTLELLRQ---PGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMF 357 (427)
T ss_dssp ----------------CCTTTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEE
T ss_pred ----------------cCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeeeEE
Confidence 01111233443333 333322 3445566666666666665420 1111112233455
Q ss_pred EEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHH
Q 010125 425 CFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVV 504 (517)
Q Consensus 425 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l 504 (517)
.|.+.......... ..... .....++.+.|.++|+++.+.. .. |+++ +...+++++++++++|
T Consensus 358 ~~~~~~~~~~~~~~-------~~~~~---~~~~~~l~~~l~~~Gi~v~~~~----~~--r~~~-~~~~t~e~i~~~l~~l 420 (427)
T 3fq8_A 358 GFFFTEGPVHNYED-------AKKSD---LQKFSRFHRGMLEQGIYLAPSQ----FE--AGFT-SLAHTEEDIDATLAAA 420 (427)
T ss_dssp EEESSSCCCCSHHH-------HTTSC---HHHHHHHHHHHHHTTEECCSST----TS--CEEC-CTTCCHHHHHHHHHHH
T ss_pred EEEEecCccccccc-------ccccc---HHHHHHHHHHHHHCCcEEecCC----CC--CEEe-eCcCCHHHHHHHHHHH
Confidence 66654321100000 00000 1234567777888886543221 11 4554 3567888999999999
Q ss_pred HHHHHH
Q 010125 505 QQHLEA 510 (517)
Q Consensus 505 ~~~~~~ 510 (517)
+++.++
T Consensus 421 ~~~l~~ 426 (427)
T 3fq8_A 421 RTVMSA 426 (427)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988764
No 221
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.71 E-value=1.7e-15 Score=158.20 Aligned_cols=329 Identities=11% Similarity=0.028 Sum_probs=180.3
Q ss_pred HHHHHHHhcccccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhccc
Q 010125 109 FLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRE 188 (517)
Q Consensus 109 ~~~~~l~~~~n~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~ 188 (517)
.+.+.+...+.... .+ ....+++.++++|++++++ ..+ ..++++|||+|+..|+.++|... +
T Consensus 77 ~v~~a~~~~~~~~~-~~---~~~~~~~~~la~~l~~~~~-~~~-------~v~~~~gg~eA~~~al~~ar~~~-~----- 138 (453)
T 2cy8_A 77 RVNAAIAEALSHGV-QY---AASHPLEVRWAERIVAAFP-SIR-------KLRFTGSGTETTLLALRVARAFT-G----- 138 (453)
T ss_dssp HHHHHHHHHHTTTC-SS---CSSCHHHHHHHHHHHHHCT-TCS-------EEEEESCHHHHHHHHHHHHHHHH-C-----
T ss_pred HHHHHHHHHHHhCC-CC---CCCCHHHHHHHHHHHhhCC-CCC-------EEEEeCCHHHHHHHHHHHHHHhh-C-----
Confidence 44455555544321 22 1356788999999999986 322 68999999999999999876421 1
Q ss_pred CCCCeEEEeCCCCchHHHH-HHHH----------cCCCC---CCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEE
Q 010125 189 NISKLIVYGSDQTHCALQK-AAQI----------VGIDV---KNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFL 254 (517)
Q Consensus 189 ~~~~~~v~~s~~~H~s~~k-aa~~----------~G~g~---~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~v 254 (517)
++.+|++. .+|+.... +... .|+.. ..++.+|. .|+++|+++|++.. ..+.+|
T Consensus 139 --~~~vi~~~-~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~d~~~le~~l~~~~---~~~~~v 205 (453)
T 2cy8_A 139 --RRMILRFE-GHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP-------DDIEGMREVFANHG---SDIAAF 205 (453)
T ss_dssp --CCEEEEEC-C----------------------------CGGGEEEECT-------TCHHHHHHHHHHHG---GGEEEE
T ss_pred --CCEEEEEc-CCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC-------CCHHHHHHHHHhcC---CCEEEE
Confidence 33444444 44443222 1111 13210 12334432 38999999997531 123466
Q ss_pred EeeccCCccccccC----hhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEE
Q 010125 255 CATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW 330 (517)
Q Consensus 255 v~t~gtt~~G~idp----l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~ 330 (517)
+++...+++|.+-| +++|.++|++||+++++|++|+++ ...........++ ..|.+ +++|+++.++..|+++
T Consensus 206 i~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~-~~di~--s~sK~l~~G~~~G~v~ 281 (453)
T 2cy8_A 206 IAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNHGMQALLDV-QPDLT--CLAKASAGGLPGGILG 281 (453)
T ss_dssp EECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTCTTHHHHHHTC-CCSEE--EEEGGGGTTSSCEEEE
T ss_pred EECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccCchhhhHHhCC-CCcEE--EEChhhhCCcceEEEe
Confidence 66655566898877 999999999999999999999865 3221110001122 35765 5669998778899998
Q ss_pred EeCchhHHhhhcCCccccCCccccccccccCCCccccCCCCCCchHHH---HHHHH-hcHHHHHHHHHHHHHHHHHHHHH
Q 010125 331 VKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLW---FVIRN-YGVANLRHFLRSHVNMAKLFERL 406 (517)
Q Consensus 331 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~---~~l~~-~g~~g~~~~i~~~~~~a~~l~~~ 406 (517)
+++. +.+.+.... ... . ....+-....+... ++++. + . +++.++..++++++.+.
T Consensus 282 ~~~~--~~~~l~~~~----~~~--------~---~~~~t~~~n~~~~aa~~aal~~~~-~---~~~~~~~~~~~~~l~~~ 340 (453)
T 2cy8_A 282 GRED--VMGVLSRGS----DRK--------V---LHQGTFTGNPITAAAAIAAIDTIL-E---DDVCAKINDLGQFAREA 340 (453)
T ss_dssp ECHH--HHTTSSSCC------------------------CCCCHHHHHHHHHHHHHHH-H---TTHHHHHHHHHHHHHHH
T ss_pred chHH--HHHHhcccc----CCC--------c---eeCCCCCCCHHHHHHHHHHHHHHh-h---hhHHHHHHHHHHHHHHH
Confidence 8642 222222100 000 0 00001111233333 34443 3 2 34566777788888887
Q ss_pred HhcC----CCeEEecCCCeeEEEEEecC-----CC-cchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeee
Q 010125 407 VSGD----KRFEIVFPCHFAVVCFRVSP-----SP-VLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAV 476 (517)
Q Consensus 407 l~~~----~~~~l~~~~~~~~v~f~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~ 476 (517)
|+++ +....+ ++...++.+.+.. .. .+.. .+....+ .....++.+.|.++|++. .+
T Consensus 341 L~~~~~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~------~~~~~~~----~~~~~~l~~~l~~~Gv~v-~~-- 406 (453)
T 2cy8_A 341 MNHLFARKGLNWLA-YGRFSGFHLMPGLPPNTTDTGSITR------AEVARPD----VKMIAAMRMALILEGVDI-GG-- 406 (453)
T ss_dssp HHHHHHHTTCCEEE-ECCTTEEEEEETSCTTCCCCHHHHT------TCSCCCC----HHHHHHHHHHHHHTTEEC-BT--
T ss_pred HHHHHhhCCCcEEE-EEeeeEEEEEEeccccccccccccc------ccccccc----HHHHHHHHHHHHHCCeEE-eC--
Confidence 7653 322222 3445567777653 10 0000 0000000 122456777777788644 32
Q ss_pred ECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHHh
Q 010125 477 LGGIYAIRFATGATLTEKRHVVVAWTVVQQHLEAFQS 513 (517)
Q Consensus 477 ~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l~~ 513 (517)
.+. +|+ +...+++++++++++|+++.+++.+
T Consensus 407 -~~~--~~l---~~~~t~~~i~~~l~~l~~~l~~~~~ 437 (453)
T 2cy8_A 407 -RGS--VFL---SAQHEREHVEHLVTTFDRVLDRLAD 437 (453)
T ss_dssp -TTE--EEC---CTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCC--EEe---eccCCHHHHHHHHHHHHHHHHHHHh
Confidence 122 454 3566888999999999999887754
No 222
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.70 E-value=1.3e-15 Score=156.11 Aligned_cols=293 Identities=10% Similarity=-0.031 Sum_probs=184.9
Q ss_pred ccccccChhh-----HHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCe---
Q 010125 122 GFNWISSPAA-----TELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKL--- 193 (517)
Q Consensus 122 ~~~~~~sp~~-----~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~--- 193 (517)
...|....+. .++++.+++|+. ..|.+... ....++|+|+++++..++.+..+ +++
T Consensus 56 ~~~Y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~----~~~i~~t~G~~~al~~~~~~l~~-----------~Gd~~~ 119 (391)
T 3bwn_A 56 MSYFSDMTNLCWFLEPELEDAIKDLHG-VVGNAATE----DRYIVVGTGSTQLCQAAVHALSS-----------LARSQP 119 (391)
T ss_dssp CSSCSCTTSSSTTSCHHHHHHHHHHHH-HHCSBCCS----SSEEEEEEHHHHHHHHHHHHHHH-----------TSSSSS
T ss_pred hhcCCCCCCcccccCHHHHHHHHHHHH-hcCCCCCC----CCeEEEeCChHHHHHHHHHHhcC-----------CCCCCc
Confidence 3456666666 889999999987 45654221 12689999999999877766543 444
Q ss_pred -EEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHH
Q 010125 194 -IVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPL 272 (517)
Q Consensus 194 -~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI 272 (517)
.|++++++|.++..+++..|+ +++.+++|.+ .++ .+ .+.+|+++.++|+||.+-+ +|
T Consensus 120 ~~Vlv~~P~y~~~~~~~~~~g~---~~~~~~~d~~---~l~--------~~------~~k~v~l~~p~NPtG~~~~--~l 177 (391)
T 3bwn_A 120 VSVVAAAPFYSTYVEETTYVRS---GMYKWEGDAW---GFD--------KK------GPYIELVTSPNNPDGTIRE--TV 177 (391)
T ss_dssp EEEEECSSCCTHHHHHHHTTCB---TTEEEEEEST---TCC--------CC------SCEEEEEESSCTTTCCCCC--CC
T ss_pred ceEEEcCCCchhHHHHHHHcCC---eEEEecCCHH---HcC--------CC------CCEEEEECCCCCCCchhHH--HH
Confidence 789999999999999999999 8999998753 222 01 2347778999999999875 55
Q ss_pred HHHHHHhC--CeEEcccccccccccCccccccccCCCCCCeeeeccccccCCC-CcceEEEEeCchhHHhhhcCCccccC
Q 010125 273 CDVAKQFG--IWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCCLWVKDPRALVSSLSTNPEYLK 349 (517)
Q Consensus 273 ~~i~~~~g--i~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p-~~~g~l~~~~~~~~~~~~~~~~~yl~ 349 (517)
++ ++|+ +++++|++|+.. .... +......+.+..++||.++.| ..+|++++.++.... .+.....+..
T Consensus 178 ~~--~~~~~~~~ii~De~y~~~-----~~~~-l~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~-~l~~~~~~~~ 248 (391)
T 3bwn_A 178 VN--RPDDDEAKVIHDFAYYWP-----HYTP-ITRRQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAK-KMVEYIIVNS 248 (391)
T ss_dssp C-------CCCEEEEECTTCST-----TTSC-CCCCBCCSEEEEEHHHHHSCGGGCEEEEEECCHHHHH-HHHHHHHHHH
T ss_pred HH--HhhcCCCEEEEeCCCCCC-----CCCc-cccCCCCeEEEEechhhcCCCccceEEEEecCHHHHH-HHHHHhcccc
Confidence 44 2255 999999999631 1111 111235678888999999744 567988875554332 2211111100
Q ss_pred CccccccccccCCCccccCCCCCCchHHHHHHHHh--c----------HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec
Q 010125 350 NKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNY--G----------VANLRHFLRSHVNMAKLFERLVSGDKRFEIVF 417 (517)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~--g----------~~g~~~~i~~~~~~a~~l~~~l~~~~~~~l~~ 417 (517)
.....+..+++...+ + .+.++++.++..++++++.+.|++.|++++..
T Consensus 249 --------------------~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 308 (391)
T 3bwn_A 249 --------------------IGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPK 308 (391)
T ss_dssp --------------------SSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCC
T ss_pred --------------------cCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc
Confidence 001222223333222 1 34577788888899999999999988877643
Q ss_pred CCCe------------e-EEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeEC-CEeEE
Q 010125 418 PCHF------------A-VVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLG-GIYAI 483 (517)
Q Consensus 418 ~~~~------------~-~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-g~~~l 483 (517)
+... + .+.+.+... ..+.+.+.+.|+...++..+. +..++
T Consensus 309 p~~~~~~f~~~~~~~~g~~~~~~~~~~--------------------------~~~~~~l~~~gV~v~pg~~fg~~~~~i 362 (391)
T 3bwn_A 309 YPEAFCNYFGKSLESYPAFAWLGTKEE--------------------------TDLVSELRRHKVMSRAGERCGSDKKHV 362 (391)
T ss_dssp CCCEEETTTTEEECCCCSEEEEEESSS--------------------------CCHHHHHHHTTEECEEGGGGTCCTTEE
T ss_pred CCccccccccccCCCcceEEEecCCcH--------------------------HHHHHHHHHCCEEEccCCCCCCCCCEE
Confidence 2111 1 344444321 123444556787655544442 25689
Q ss_pred EEEecCCCCcHHHHHHHHHHHHHHHHH
Q 010125 484 RFATGATLTEKRHVVVAWTVVQQHLEA 510 (517)
Q Consensus 484 R~~~~~~~t~~~di~~l~~~l~~~~~~ 510 (517)
|+++.+ +++++++++++|+++.++
T Consensus 363 Ris~~~---~~e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 363 RVSMLS---REDVFNVFLERLANMKLI 386 (391)
T ss_dssp EEESCS---CHHHHHHHHHHHHSCC--
T ss_pred EEEecC---CHHHHHHHHHHHHHHHHh
Confidence 999952 778999999999877543
No 223
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.69 E-value=2.2e-15 Score=156.57 Aligned_cols=312 Identities=11% Similarity=0.011 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHH
Q 010125 132 TELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQI 211 (517)
Q Consensus 132 ~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~ 211 (517)
..+..++.++++++++ ..+ ..++++|||+|+..|+.++|... + ++.+|+.....|.....+...
T Consensus 95 ~~~~~~l~~~la~~~~-~~~-------~v~~~~sgseA~~~al~~ar~~~-~-------~~~vi~~~~~yhg~~~~~~~~ 158 (434)
T 2epj_A 95 GEAEVLLAEKILGYVK-RGG-------MIRFVNSGTEATMTAIRLARGYT-G-------RDLILKFDGCYHGSHDAVLVA 158 (434)
T ss_dssp CHHHHHHHHHHHHHHC-TTC-------EEEEESSHHHHHHHHHHHHHHHH-C-------CCEEEEEETCCCCSSGGGSEE
T ss_pred CHHHHHHHHHHHHhCC-CCC-------EEEEeCCHHHHHHHHHHHHHHhh-C-------CCeEEEEcCCcCCCCHHHHHh
Confidence 4455667778888774 222 68999999999999999876431 1 334444443334322111111
Q ss_pred -------------cCCC---CCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccC----hhH
Q 010125 212 -------------VGID---VKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDP----LKP 271 (517)
Q Consensus 212 -------------~G~g---~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idp----l~e 271 (517)
.|+. ...++.+|. .|+++|+++|++.. ..+.+|+++...+++|.+-| +++
T Consensus 159 ~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~~l~~~~---~~~~~vi~ep~~~~~G~~~~~~~~l~~ 228 (434)
T 2epj_A 159 AGSAAAHYGVPTSAGVPEAVARLTLVTPY-------NDVEALERVFAEYG---DRIAGVIVEPVIANAGVIPPRREFLAA 228 (434)
T ss_dssp CC------CEESSTTCCHHHHTTEEEEET-------TCHHHHHHHHHHHG---GGEEEEEECSSBCSSSCBCCCHHHHHH
T ss_pred cCCCccccCCCCCCCCCCcccCceEecCC-------CCHHHHHHHHHhCC---CCEEEEEEeCCcCCCCccCCCHHHHHH
Confidence 1220 013555653 28999999997531 12346666666667898887 999
Q ss_pred HHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCccccCCc
Q 010125 272 LCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNK 351 (517)
Q Consensus 272 I~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl~~~ 351 (517)
|.++|++||+++++|++|+++ ...+.......++ ..|.+ +++|+++.++..|++++++. +.+.+.......
T Consensus 229 l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~-~~di~--s~sK~l~~G~~~G~v~~~~~--~~~~l~~~~~~~--- 299 (434)
T 2epj_A 229 LQRLSRESGALLILDEVVTGF-RLGLEGAQGYFNI-EGDII--VLGKIIGGGFPVGAVAGSRE--VMSLLTPQGKVF--- 299 (434)
T ss_dssp HHHHHHHHTCEEEEEETTTTT-TSSTTHHHHHHTC-CCSEE--EEEGGGGTTSSCEEEEECHH--HHTTBTTTSSBC---
T ss_pred HHHHHHHcCCEEEEEcchhce-eCCcchhhHHhCC-CCCee--eecchhcCCcceeeeeecHH--HHHhhccCCCcc---
Confidence 999999999999999999865 2221111001122 46765 45699987777899988642 222222100000
Q ss_pred cccccccccCCCccccCCCCCCchHH---HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC---CeEEecCCCeeEEE
Q 010125 352 ATESMQVVDYKDWQITLSRRFRSLKL---WFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDK---RFEIVFPCHFAVVC 425 (517)
Q Consensus 352 ~~~~~~~~~~~~~~~~~sr~~~al~~---~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~---~~~l~~~~~~~~v~ 425 (517)
...+-....+.. .++++.+.. +++.++..++++++.+.|+++. ++....++..+++.
T Consensus 300 --------------~~~t~~~~~~~~aa~~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~ 362 (434)
T 2epj_A 300 --------------NAGTFNAHPITMAAGLATLKALEE---EPVYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQ 362 (434)
T ss_dssp --------------CCCTTTTCHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEETTEEE
T ss_pred --------------cCCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEE
Confidence 000111122333 333443322 3456777778888888886541 23211123445667
Q ss_pred EEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHH
Q 010125 426 FRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQ 505 (517)
Q Consensus 426 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~ 505 (517)
+.+.......... .... + .....++.+.|.++|+.. .+.. ...+|++ ...+++|+++++++|+
T Consensus 363 i~~~~~~~~~~~~-----~~~~-~----~~~~~~~~~~l~~~Gv~v-~~~~---~~~~~~~---~~~t~e~i~~~l~~l~ 425 (434)
T 2epj_A 363 LFIGVEEVSNAAQ-----ARKA-D----KKFYVKLHEEMLRRGVFI-APSN---LEAVFTG---LPHQGEALEIAVEGLR 425 (434)
T ss_dssp EEETCSCCSSHHH-----HTTS-C----HHHHHHHHHHHHHTTEEC-CSST---TSCEECC---TTCSHHHHHHHHHHHH
T ss_pred EEEeCCCcccchh-----cccc-C----HHHHHHHHHHHHHCCeEE-eccC---CCcEEEe---ccCCHHHHHHHHHHHH
Confidence 7665310000000 0000 0 123456777777888643 3321 1234443 4668889999999999
Q ss_pred HHHHHHH
Q 010125 506 QHLEAFQ 512 (517)
Q Consensus 506 ~~~~~l~ 512 (517)
++.+++.
T Consensus 426 ~~l~~~~ 432 (434)
T 2epj_A 426 SSLKTVL 432 (434)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9887764
No 224
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.69 E-value=2.8e-16 Score=167.73 Aligned_cols=357 Identities=7% Similarity=-0.009 Sum_probs=200.8
Q ss_pred cccccChhhHHHHHH-HHHHHHHHcCC--Cc-ccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeC
Q 010125 123 FNWISSPAATELENI-VMDWLGQMLKL--PK-SFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGS 198 (517)
Q Consensus 123 ~~~~~sp~~~~lE~~-v~~~l~~l~g~--~~-~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s 198 (517)
..|....+...+.++ +..|+.+.++. +. . ...+++|+|+++++..++.+...+.+ ..+++.|++.
T Consensus 132 ~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~-----~~~I~~t~G~~eal~~~~~~l~~~~l------~~~Gd~Vlv~ 200 (546)
T 2zy4_A 132 CNYPVPPRMLNISEKIVRQYIIREMGADAIPSE-----SVNLFAVEGGTAAMAYIFESLKLNGL------LKAGDKVAIG 200 (546)
T ss_dssp CSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGG-----GEEEEEEEHHHHHHHHHHHHHHHTTS------SCTTCEEEEE
T ss_pred CCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCC-----cceEEEECCHHHHHHHHHHHhhhhhc------CCCCCEEEEe
Confidence 356555555555555 55566776543 11 1 12689999999998777655311000 0155678888
Q ss_pred CCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccC---hhHHHHH
Q 010125 199 DQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDP---LKPLCDV 275 (517)
Q Consensus 199 ~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idp---l~eI~~i 275 (517)
+++|..+..++.+.+.|. +++.+|+++++++.+|+++|++++... +.+|+++.++|+||.+-+ +++|+++
T Consensus 201 ~P~y~~~~~~~~~~~~g~-~~~~v~~~~~~~~~~d~~~l~~~~~~~------~k~v~l~~p~NPtG~~~~~~~l~~l~~~ 273 (546)
T 2zy4_A 201 MPVFTPYIEIPELAQYAL-EEVAINADPSLNWQYPDSELDKLKDPA------IKIFFCVNPSNPPSVKMDQRSLERVRNI 273 (546)
T ss_dssp ESCCHHHHHHHHSTTSCC-EEEEEECBGGGTTBCCHHHHGGGGSTT------EEEEEEESSCSSSCBCCCHHHHHHHHHH
T ss_pred CCCCccHHHHHHHcCCCc-EEEEEecCcccCCCCCHHHHHHhhCCC------CeEEEEECCCCCCCccCCHHHHHHHHHH
Confidence 899999998877665332 788999876556789999998876433 347777799999999865 6678888
Q ss_pred H--HHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCC-CCcceEEEEeCchhHHhhhcCCc-------
Q 010125 276 A--KQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFA-TLDCCCLWVKDPRALVSSLSTNP------- 345 (517)
Q Consensus 276 ~--~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~-p~~~g~l~~~~~~~~~~~~~~~~------- 345 (517)
| ++||+++++|++|+.+... ...........+.++.+++|+++. .+.+|+++..+...........+
T Consensus 274 a~~~~~~~~ii~De~y~~~~~~---~~s~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~p~~~~~~l 350 (546)
T 2zy4_A 274 VAEHRPDLMILTDDVYGTFADD---FQSLFAICPENTLLVYSFSKYFGATGWRLGVVAAHQQNVFDLALDKLQESEKVAL 350 (546)
T ss_dssp HHHTCTTCEEEEECTTGGGSTT---CCCHHHHCGGGEEEEEESTTTTTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHH
T ss_pred HHhccCCcEEEEeCcchhhccc---CcCHHHhCCCCEEEEEeCccccCCCCcceEEEEECCHHHHHHHHhhcchhhhHHH
Confidence 8 7899999999999876531 111111112345778899999974 46689998876532221111000
Q ss_pred --cccCCccccccccccC--------CCccccCCCCCCchHHHH----HH-HHh--cHHHHHHHHHHHHHHHHHHHHHHh
Q 010125 346 --EYLKNKATESMQVVDY--------KDWQITLSRRFRSLKLWF----VI-RNY--GVANLRHFLRSHVNMAKLFERLVS 408 (517)
Q Consensus 346 --~yl~~~~~~~~~~~~~--------~~~~~~~sr~~~al~~~~----~l-~~~--g~~g~~~~i~~~~~~a~~l~~~l~ 408 (517)
.|-.... ......+ .......+.........+ ++ ..+ +....+++.+.+.++.+.+.+.|.
T Consensus 351 ~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~~~~~~~~~r~~~~~r~~~l~~~L~ 428 (546)
T 2zy4_A 351 DHRYRSLLP--DVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEADEYKHTLKQLIRRRETTLYRELG 428 (546)
T ss_dssp HHHHTTTCS--CGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHGGGT
T ss_pred HHHhhhccc--cccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0000000 0000000 000000000011111111 11 112 233455556666667777777775
Q ss_pred cCCCeEEecCCCeeEE-EEEecCCCcchhhhhhhhhccccchHHHH--H-HHHHHHHHHHHhcCcEEEeeeeEC-CEeEE
Q 010125 409 GDKRFEIVFPCHFAVV-CFRVSPSPVLMDKLKTKYVNCLLSEEEQI--N-EFNRELLESINASGKAYMTHAVLG-GIYAI 483 (517)
Q Consensus 409 ~~~~~~l~~~~~~~~v-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~l~~~l~~~g~~~~~~~~~~-g~~~l 483 (517)
. ++.. .++..+++ .+++.... .. .+. ......+ + .....+.+.+.+.|+...++..+. +..++
T Consensus 429 -~-~~~~-~~~~~~~~l~~~l~~~~--~~-----~~~--~~~~~wl~~~~~~~~~l~~ll~~~gV~v~pG~~F~~~~~~i 496 (546)
T 2zy4_A 429 -M-PPLR-DENAVDYYTLIDLQDVT--AK-----LYG--EAFSEWAVKQSSTGDMLFRIADETGIVLLPGRGFGSNRPSG 496 (546)
T ss_dssp -S-SCCC-CTTBCCSEEEEEHHHHH--HH-----HHC--HHHHHHHHHHCCHHHHHHHHHHHHSCCCEESSCTTCSSCEE
T ss_pred -C-Cccc-CCCCeeEEEEEEHHHhh--cc-----ccc--HHHHHHhhccCCHHHHHHHHHHHCCEEEeCccccCCCCCeE
Confidence 3 3332 34555554 34432100 00 000 0000000 0 012345566677888766655443 34689
Q ss_pred EEEecCCCCcHHHHHHHHHHHHHHHHHHHhhcC
Q 010125 484 RFATGATLTEKRHVVVAWTVVQQHLEAFQSAFK 516 (517)
Q Consensus 484 R~~~~~~~t~~~di~~l~~~l~~~~~~l~~~~~ 516 (517)
|+++. ..++++++++++.|+++.+++.++++
T Consensus 497 Ris~~--~~~~e~i~~~~~~l~~~l~~~~~~~~ 527 (546)
T 2zy4_A 497 RASLA--NLNEYEYAAIGRALRKMADELYAEYS 527 (546)
T ss_dssp EEESS--SSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEec--cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99995 34678999999999999888876664
No 225
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.69 E-value=4.9e-16 Score=159.81 Aligned_cols=327 Identities=10% Similarity=0.020 Sum_probs=202.3
Q ss_pred hHHHHHHHHHhcc-c-ccccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHH
Q 010125 106 IAGFLGEMLSSGF-N-IVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLN 183 (517)
Q Consensus 106 ~~~~~~~~l~~~~-n-~~~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~ 183 (517)
++..+.+... .. + .....|....+..++.+.+++|+.+..+.+... +.-.+++|.||+.|+..++.+..+.
T Consensus 48 ~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~---~~i~i~~t~G~~~al~~~~~~l~~~--- 120 (405)
T 3k7y_A 48 IFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIED---KKICTIQCIGGTGAIFVLLEFLKML--- 120 (405)
T ss_dssp CCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTT---TCEEEEEEEHHHHHHHHHHHHHHTT---
T ss_pred ccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHHHHHHcCCCCccccc---cceEEEEcCchHHHHHHHHHHHHhc---
Confidence 3455666655 32 2 334578888889999999999997654432110 0003589999999887776654331
Q ss_pred HhcccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeecc-CCc
Q 010125 184 KIGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIG-TTA 262 (517)
Q Consensus 184 ~~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~g-tt~ 262 (517)
.+ +.|++.++++..+..+++..|. +++.+|+..++++.+|+++|++++++..+ ..+|+++.+ +||
T Consensus 121 ------~~-d~Vlv~~P~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~~~----~~~i~l~~~~~NP 186 (405)
T 3k7y_A 121 ------NV-ETLYVTNPPYINHVNMIESRGF---NLKYINFFDYNLIDINYDLFLNDLRNIPN----GSSVILQISCYNP 186 (405)
T ss_dssp ------TC-CEEEEESSCCHHHHHHHHTTTC---EEEEECCEETTTTEECHHHHHHHHHHSCS----SCEEEECCSSCTT
T ss_pred ------CC-CEEEEeCCCCHhHHHHHHHcCC---eEEEEeccccccCCcCHHHHHHHHHhCCC----CeEEEEeCCCCCC
Confidence 15 7789999999999999999999 99999983233589999999999975321 125666554 899
Q ss_pred ccccc---ChhHHHHHHHHhCCeEEcccccccccccC-c----cccccccCCCCCC-eeeeccccccC-CCCcceEEEE-
Q 010125 263 ITAVD---PLKPLCDVAKQFGIWVHVDAAYAGSACIC-P----EFRHFIDGVEGAD-SFSLNAHKWFF-ATLDCCCLWV- 331 (517)
Q Consensus 263 ~G~id---pl~eI~~i~~~~gi~lhvDaA~g~~~~~~-~----~~~~~~~g~~~aD-si~~~~hK~l~-~p~~~g~l~~- 331 (517)
||.+- .+++|+++|++||+|+++|.+|..+.... + ..+.... . .-. .+..++.|.++ ....+|++++
T Consensus 187 TG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~-~-~~~~i~~~S~SK~~~l~GlRiG~~~~~ 264 (405)
T 3k7y_A 187 CSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEE-K-NIAFSVCQSFSKNMSLYGERAGALHIV 264 (405)
T ss_dssp TCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHT-T-TCCEEEEEECTTTSCCTTTTEEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHh-c-CCcEEEEeeCCccCCCccccceEEEEE
Confidence 99884 47788899999999999999997765321 0 0111111 1 112 44567999998 5688999864
Q ss_pred -eCchhHHhhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhc--------HHHHHHHHHHHHHHHHH
Q 010125 332 -KDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYG--------VANLRHFLRSHVNMAKL 402 (517)
Q Consensus 332 -~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g--------~~g~~~~i~~~~~~a~~ 402 (517)
.+++... .+......+... ...+ ...+...++...+. .+.++++.++..+++++
T Consensus 265 ~~~~~~~~-~~~~~l~~~~~~-------------~~~~---~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~ 327 (405)
T 3k7y_A 265 CKNQEEKK-IVFNNLCFIVRK-------------FYSS---PVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRIL 327 (405)
T ss_dssp CSSHHHHH-HHHHHHHHHHHT-------------TTSS---CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCHHHHH-HHHHHHHHHHhc-------------ccCC---CcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443321 110000000000 0000 01222222222221 22345556677888999
Q ss_pred HHHHHh----cCC---CeEEecCCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeee
Q 010125 403 FERLVS----GDK---RFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHA 475 (517)
Q Consensus 403 l~~~l~----~~~---~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~ 475 (517)
+.+.|+ +.. ++++. +|+.++++|.-.+. ++.++|.+.|+ ++.+.
T Consensus 328 l~~~L~~~~~~~g~~~~~~~~-~p~gg~f~~~~l~~---------------------------~~~~~L~~~gV-~v~p~ 378 (405)
T 3k7y_A 328 FFNKLETYQKKYNLNYDWNVY-KKQRGLFSFVPLLA---------------------------KIAEHLKTHHI-YIINN 378 (405)
T ss_dssp HHHHHHHHGGGGTCCCCGGGG-SSCCSSEEECGGGG---------------------------GGTTTTTTTTE-ECCTT
T ss_pred HHHHHHhhhhhcCCCCCCccc-cCCceEEEecCCCH---------------------------HHHHHHHHCCE-eecCC
Confidence 999998 652 14543 56677665521111 12244544554 44432
Q ss_pred eECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 010125 476 VLGGIYAIRFATGATLTEKRHVVVAWTVVQQHLEA 510 (517)
Q Consensus 476 ~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~ 510 (517)
+ |+++.+ .++++|++++++|.++.++
T Consensus 379 ---~----Ris~a~--~~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 379 ---G----RINVSG--ITKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp ---S----EEEGGG--CCTTHHHHHHHHHHHHHHC
T ss_pred ---C----eEEEec--cCHHHHHHHHHHHHHHHhh
Confidence 2 999853 4566999999999988764
No 226
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=99.68 E-value=6.1e-15 Score=154.91 Aligned_cols=315 Identities=12% Similarity=0.026 Sum_probs=176.2
Q ss_pred hHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHH-hc----------------ccCC-CC
Q 010125 131 ATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNK-IG----------------RENI-SK 192 (517)
Q Consensus 131 ~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~-~g----------------~~~~-~~ 192 (517)
..++++++.+.++++++...+ ..+|++|||+||..|+.+++.....+ .| ..+. .+
T Consensus 108 ~~~l~~~la~~l~~~~~~~~~-------~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~ 180 (472)
T 1ohv_A 108 PENFVEKLRESLLSVAPKGMS-------QLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDY 180 (472)
T ss_dssp BTTHHHHHHHTGGGGCCTTCC-------EEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCC
T ss_pred HHHHHHHHHHHHHHhCCCCcC-------EEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCC
Confidence 467788888878777643322 68999999999999999997543110 01 0111 13
Q ss_pred eEEEeCCCCchHHHHHHHHcCC--------CCCCEEEEecCCC--C---C--c-----ccCHHHHHHHHHHhHhcCCcce
Q 010125 193 LIVYGSDQTHCALQKAAQIVGI--------DVKNFRAIKTTKS--S---S--Y-----GLSPDSLMAQINSDVEVGLIPL 252 (517)
Q Consensus 193 ~~v~~s~~~H~s~~kaa~~~G~--------g~~~v~~vp~d~~--~---~--~-----~~d~~~Le~~i~~~~~~g~~p~ 252 (517)
.+|......|-+..-+..+.|. ....+..++.... . . + ..|+++|+++|++....+..+.
T Consensus 181 ~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~ 260 (472)
T 1ohv_A 181 SILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVA 260 (472)
T ss_dssp EEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred eEEEECCCcccccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 4444554556555545444442 1111122332110 0 0 0 2378999999976322121345
Q ss_pred EEEeeccCCccccccC----hhHHHHHHHHhCCeEEcccccccccccCccccccccCCC-CCCeeeecccccc-CCCCcc
Q 010125 253 FLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE-GADSFSLNAHKWF-FATLDC 326 (517)
Q Consensus 253 ~vv~t~gtt~~G~idp----l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~-~aDsi~~~~hK~l-~~p~~~ 326 (517)
+|++....+++|.+-| +++|.++|++||++||+|++|.++......+.....++. ..|.++++ |++ + .
T Consensus 261 ~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~t~s--K~~l~----G 334 (472)
T 1ohv_A 261 GIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFS--KKMMT----G 334 (472)
T ss_dssp EEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEEEEC--GGGSS----E
T ss_pred EEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEEEEc--ccccc----C
Confidence 6777666777998877 999999999999999999999763321110010011221 27877655 984 3 2
Q ss_pred eEEEEeCchhHHhhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 010125 327 CCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERL 406 (517)
Q Consensus 327 g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~ 406 (517)
|++. + +. +. ...+.+.. . + .++......++.++++.+..+ ++.++..+++++|.+.
T Consensus 335 G~~~-~-~~-~~---~~~~~~~~------------~--T-~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~ 390 (472)
T 1ohv_A 335 GFFH-K-EE-FR---PNAPYRIF------------N--T-WLGDPSKNLLLAEVINIIKRE---DLLSNAAHAGKVLLTG 390 (472)
T ss_dssp EEEE-C-GG-GS---CSSSSSSC------------C--S-SSSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHH
T ss_pred CccC-c-hh-hc---cccccccc------------C--c-cCccHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHH
Confidence 5443 2 21 11 00000000 0 1 011111112333444443222 3566777788888888
Q ss_pred HhcC----CC-eEEecCCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEe
Q 010125 407 VSGD----KR-FEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIY 481 (517)
Q Consensus 407 l~~~----~~-~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~ 481 (517)
|+++ |+ +.-+ .+...++.|.+.. ......+.+.|.++|...... +..
T Consensus 391 L~~l~~~~~~~v~~~-~~~g~~~~~~~~~-----------------------~~~~~~~~~~l~~~Gv~~~~~----g~~ 442 (472)
T 1ohv_A 391 LLDLQARYPQFISRV-RGRGTFCSFDTPD-----------------------ESIRNKLISIARNKGVMLGGC----GDK 442 (472)
T ss_dssp HHHHHHHCTTTCEEE-EEETTEEEEECSS-----------------------HHHHHHHHHHHHHTTEECEEE----TTT
T ss_pred HHHHHhhCCCcEEee-cCCceEEEEEeCC-----------------------hhHHHHHHHHHHHCCeEEecC----CCC
Confidence 7653 43 3322 2334455664421 123456777777888654331 346
Q ss_pred EEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 010125 482 AIRFATGATLTEKRHVVVAWTVVQQHLEAF 511 (517)
Q Consensus 482 ~lR~~~~~~~t~~~di~~l~~~l~~~~~~l 511 (517)
++|+++ +..++++||++++++|.++.+++
T Consensus 443 ~iRi~~-~~~~t~e~i~~~~~~l~~~l~~~ 471 (472)
T 1ohv_A 443 SIRFRP-TLVFRDHHAHLFLNIFSDILADF 471 (472)
T ss_dssp EEEECC-CTTCCHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEC-CCCCCHHHHHHHHHHHHHHHHhc
Confidence 899987 56788899999999999887643
No 227
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.68 E-value=4.5e-15 Score=153.93 Aligned_cols=307 Identities=9% Similarity=-0.009 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHHc
Q 010125 133 ELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQIV 212 (517)
Q Consensus 133 ~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~~ 212 (517)
....++.++++++++ ..+ ..+|++|||+|+..|+..++... + ++.+|......|.....+....
T Consensus 93 ~~~~~la~~l~~~~~-~~~-------~v~~~~sGsea~~~al~~a~~~~----~----~~~ii~~~~~yhg~~~~~~~~~ 156 (429)
T 4e77_A 93 EMEVKMAQLVTDLVP-TMD-------MVRMVNSGTEATMSAIRLARGYT----G----RDKIIKFEGCYHGHADCLLVKA 156 (429)
T ss_dssp HHHHHHHHHHHHHST-TCS-------EEEEESSHHHHHHHHHHHHHHHH----C----CCEEEEETTCCCC---------
T ss_pred HHHHHHHHHHHhhCC-CCC-------EEEEeCcHHHHHHHHHHHHHHhh----C----CCEEEEEcCccCCCChhhhhhc
Confidence 445566778888876 222 68999999999999999887531 1 3344555545554444333222
Q ss_pred CCCCC----------------CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccC----hhHH
Q 010125 213 GIDVK----------------NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDP----LKPL 272 (517)
Q Consensus 213 G~g~~----------------~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idp----l~eI 272 (517)
|.|.. .+..+|. -|+++|++++++.. ..+.+|+++..+++.|.+.| +++|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~~---~~~~~vi~ep~~~~~g~~~~~~~~l~~l 226 (429)
T 4e77_A 157 GSGALTLGQPNSPGVPTDFAKHTLTCTY-------NDLASVRQAFEQYP---QEVACIIVEPVAGNMNCIPPLPEFLPGL 226 (429)
T ss_dssp ---------CCCTTSCGGGGTTEEEECT-------TCHHHHHHHHHHST---TTEEEEEECSSBCTTSCBCCCTTHHHHH
T ss_pred CCcccccCCCCcCCCCCccCCceeecCC-------CCHHHHHHHHHhcC---CCEEEEEECCccCCCCCcCCCHHHHHHH
Confidence 22110 1222221 18999999997531 12346666665666788877 9999
Q ss_pred HHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCccccCCcc
Q 010125 273 CDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKA 352 (517)
Q Consensus 273 ~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~ 352 (517)
.++|++||+++|+|++|+++ ...........++ ..|.++ +.|.++.++..|+++.++ +. .+.+........
T Consensus 227 ~~l~~~~~~lli~DEv~~g~-r~g~~~~~~~~~~-~pdi~t--~sK~~~~G~~~G~~~~~~-~~-~~~l~~~~~~~~--- 297 (429)
T 4e77_A 227 RALCDEFGALLIIDEVMTGF-RVALAGAQDYYHV-IPDLTC--LGKIIGGGMPVGAFGGRR-EV-MNALAPTGPVYQ--- 297 (429)
T ss_dssp HHHHHHHTCEEEEEETTTBT-TTBTTCHHHHTTC-CCSEEE--EEGGGGTTSCCEEEEECH-HH-HTTBTTTSSBCC---
T ss_pred HHHHHHcCCEEEEeccccCc-ccCcchHHHhcCC-CCCeee--ecccccCCCCeEEEEECH-HH-HHHhccCCCccc---
Confidence 99999999999999999865 2221111001122 346654 459998878889877643 22 222221100000
Q ss_pred ccccccccCCCccccCCCCCCchHHHH---HHHHhcHHHHHHHHHHHHHHHHHHHHHHhc----CCCeEEecCCCeeEEE
Q 010125 353 TESMQVVDYKDWQITLSRRFRSLKLWF---VIRNYGVANLRHFLRSHVNMAKLFERLVSG----DKRFEIVFPCHFAVVC 425 (517)
Q Consensus 353 ~~~~~~~~~~~~~~~~sr~~~al~~~~---~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~----~~~~~l~~~~~~~~v~ 425 (517)
..+-....+...+ +++.+.. ++++++..++.+++++.|++ .+..... +....++.
T Consensus 298 --------------~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~ 359 (429)
T 4e77_A 298 --------------AGTLSGNPIAMAAGFACLTEISQ---VGVYETLTELTDSLATGLRHAAKEENIPLVV-NHVGGMFG 359 (429)
T ss_dssp ----------------CCCCCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHTTCCCEE-EEETTEEE
T ss_pred --------------cCCCCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCceEE-EEeeeEEE
Confidence 0011123333333 3443322 34455666666666666654 3221111 22344566
Q ss_pred EEecCCC-cchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHH
Q 010125 426 FRVSPSP-VLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVV 504 (517)
Q Consensus 426 f~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l 504 (517)
+.+.... ...+.. ....-.....++.+.|.++|+++.+. +...+|++ ..++++|+++++++|
T Consensus 360 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~~~Gi~v~~~----~~~~~~~~---~~~t~e~i~~~l~~l 422 (429)
T 4e77_A 360 LFFTNADTVTCYQD----------VMNCDVERFKRFFHLMLEEGVYLAPS----AFEAGFMS---LAHSNEDIQKTVNAA 422 (429)
T ss_dssp EECCSSSCCCSHHH----------HHTSCHHHHHHHHHHHHHTTEECCSS----TTSCEECC---TTCCHHHHHHHHHHH
T ss_pred EEEccCcccccccc----------cccccHHHHHHHHHHHHHCCeEEeec----CCCCEEEe---ccCCHHHHHHHHHHH
Confidence 6654320 000000 00000123456778888888654322 11234443 466889999999999
Q ss_pred HHHHH
Q 010125 505 QQHLE 509 (517)
Q Consensus 505 ~~~~~ 509 (517)
+++.+
T Consensus 423 ~~~l~ 427 (429)
T 4e77_A 423 RRCFA 427 (429)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 88764
No 228
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=99.63 E-value=2.8e-14 Score=143.93 Aligned_cols=353 Identities=11% Similarity=0.049 Sum_probs=200.4
Q ss_pred ceeCCCCCChHHHHHHHHHhcc-cccccc------cccChhhHHHHHHHHHHHHHHcCCCcccccCCCCce--EEcCCch
Q 010125 97 FAYFPSSGSIAGFLGEMLSSGF-NIVGFN------WISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGG--VIQGTTC 167 (517)
Q Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~-n~~~~~------~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g--~~t~ggt 167 (517)
+...++-.-....+.+++.+.+ |.+.-. |...-...++|..+++..+++||++... +| +=..+|+
T Consensus 57 ieLIASEN~~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~------w~VNVQP~SGs 130 (490)
T 3ou5_A 57 LELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQ------WGVNVQPYSGS 130 (490)
T ss_dssp EECCTTCCCCCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTTT------EEEECCCSSHH
T ss_pred ceEecCCCcCCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccc------cCCCCCcCCHH
Confidence 4444444333344555555544 444333 3334467899999999999999998652 22 4455899
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCeEEEeC---CCCchHHHH-----HHHHcCCCCCCEEEEecCCCCCcccCHHHHHH
Q 010125 168 EAILCTLTAARDRVLNKIGRENISKLIVYGS---DQTHCALQK-----AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMA 239 (517)
Q Consensus 168 ~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s---~~~H~s~~k-----aa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~ 239 (517)
.||+.+..+..+ |++.|+.- .-.|.+.-. .....|.-. +++..++|+ +++.+|.+++++
T Consensus 131 ~AN~avy~All~-----------PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~-~~~~Y~vd~-~t~~IDyd~~~~ 197 (490)
T 3ou5_A 131 PANLAVYTALLQ-----------PHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFF-ESMPYKLNP-KTGLIDYNQLAL 197 (490)
T ss_dssp HHHHHHHHHHCC------------CCCEECBC-----------------------------CBCEET-TTTEECHHHHHH
T ss_pred HHHHHHHHHHcC-----------CCCEEEecccCCCCcccccccCCCcccccccccc-cccccccCC-CCCcccHHHHHH
Confidence 999877776644 45556533 334555432 223334311 344556665 368999999999
Q ss_pred HHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccc
Q 010125 240 QINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKW 319 (517)
Q Consensus 240 ~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~ 319 (517)
...+.+ |.+|++- .+..--.-|++++.+||++.|.+|++|.||-.+......+.+-+ +.||++|.+.||+
T Consensus 198 ~A~~~k-----PklIi~G--~SaY~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~---~~ADvVTtTTHKT 267 (490)
T 3ou5_A 198 TARLFR-----PRLIIAG--TSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPF---KHADIVTTTTHKT 267 (490)
T ss_dssp HHHHHC-----CSEEEEC--CSSCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGG---GTCSEEEEESSST
T ss_pred HHhhcC-----CCeEEEC--CccCccccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCcc---ccceEEecccccc
Confidence 987753 6666553 33444567899999999999999999999977766554444333 4799999999999
Q ss_pred cCCCCcceEEEEeCchhHHhh-hcCCccccCCccccccccccC-CCccccCCCCCCch-HHHHHHHHhcHHHHHHHHHHH
Q 010125 320 FFATLDCCCLWVKDPRALVSS-LSTNPEYLKNKATESMQVVDY-KDWQITLSRRFRSL-KLWFVIRNYGVANLRHFLRSH 396 (517)
Q Consensus 320 l~~p~~~g~l~~~~~~~~~~~-~~~~~~yl~~~~~~~~~~~~~-~~~~~~~sr~~~al-~~~~~l~~~g~~g~~~~i~~~ 396 (517)
|..|. .|++++++....... ......|-... ..+. .-.+++++-....+ +...+++..-...+++..++.
T Consensus 268 LrGPr-GG~Il~~~~~~~~~~k~~~~~~~~~~k------kin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qV 340 (490)
T 3ou5_A 268 LRGAR-SGLIFYRKGVKAVDPKTGREIPYTFED------RINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQV 340 (490)
T ss_dssp TCSCS-CEEEEEECSEEEECC--CCEEECCCHH------HHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred ccCCC-ceEEEeccccccccccccchhHHHHHH------HHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 99985 788888764210000 00000000000 0000 00022333222222 223344433345678888999
Q ss_pred HHHHHHHHHHHhcCCCeEEecC-CCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeee
Q 010125 397 VNMAKLFERLVSGDKRFEIVFP-CHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHA 475 (517)
Q Consensus 397 ~~~a~~l~~~l~~~~~~~l~~~-~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~ 475 (517)
.++|+.|.+.|.+. ||.++.. .+..++.+.+.+.++ .-++..+.|.+.|+..-..+
T Consensus 341 v~NAkaLA~~L~~~-G~~vvsGgTdnHlvLvDl~~~g~----------------------tG~~ae~~Le~agItvNkN~ 397 (490)
T 3ou5_A 341 LKNARAMADALLER-GYSLVSGGTDNHLVLVDLRPKGL----------------------DGARAERVLELVSITANKNT 397 (490)
T ss_dssp HHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGTC----------------------CHHHHHHHHHHTTEECEEEC
T ss_pred HHHHHHHHHHHHhC-CCeeecCCCCceEEEEeccccCC----------------------CHHHHHHHHHHcCcEECCCC
Confidence 99999999999886 9999852 445667776665421 11233344555676432211
Q ss_pred eEC-----CEeEEEEEe---cCCCCcHHHHHHHHHHHHHHH
Q 010125 476 VLG-----GIYAIRFAT---GATLTEKRHVVVAWTVVQQHL 508 (517)
Q Consensus 476 ~~~-----g~~~lR~~~---~~~~t~~~di~~l~~~l~~~~ 508 (517)
... -...||+.. +.....++|++++.+.|.++.
T Consensus 398 iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l 438 (490)
T 3ou5_A 398 CPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGV 438 (490)
T ss_dssp CTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 111 134699986 233456788888888776654
No 229
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=99.61 E-value=4.3e-14 Score=146.29 Aligned_cols=308 Identities=12% Similarity=0.042 Sum_probs=170.1
Q ss_pred hHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHH
Q 010125 131 ATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQ 210 (517)
Q Consensus 131 ~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~ 210 (517)
...++.++.++++++++ ..+ ..++++|||+|+..++.+||... + ++.+|+.....|.....+..
T Consensus 90 ~~~~~~~l~~~l~~~~~-~~~-------~v~~~~~g~ea~~~al~~ar~~~----~----~~~vi~~~~~yhg~~~~~~~ 153 (424)
T 2e7u_A 90 PSPLEVALAKKVKRAYP-FVD-------LVRFVNSGTEATMSALRLARGYT----G----RPYIVKFRGNYHGHADGLLV 153 (424)
T ss_dssp CCHHHHHHHHHHHHHCT-TCC-------EEEEESSHHHHHHHHHHHHHHHH----C----CCEEEEETTCCCCCCGGGSE
T ss_pred CCHHHHHHHHHHHHhCC-CCC-------EEEEeCCHHHHHHHHHHHHHHhh----C----CCEEEEECCCcCCCcHHHHH
Confidence 34566677788888875 222 68999999999999998876431 1 34455554334432222211
Q ss_pred HcCC-----------CC-----CCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccC----hh
Q 010125 211 IVGI-----------DV-----KNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDP----LK 270 (517)
Q Consensus 211 ~~G~-----------g~-----~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idp----l~ 270 (517)
..|. |. ..++.+|. .|+++|++++++.. ..+.+|+++..++++|.+-| ++
T Consensus 154 ~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~~l~~~~---~~~~~vi~ep~~~~~G~~~~~~~~l~ 223 (424)
T 2e7u_A 154 EAGSGALTLGVPSSAGVPEEYAKLTLVLEY-------NDPEGLREVLKRRG---EEIAAIIFEPVVGNAGVLVPTEDFLK 223 (424)
T ss_dssp ECCSSSCCBCEESSTTCCHHHHTTEEEECT-------TCHHHHHHHHHHHG---GGEEEEEECSSBCTTSCBCCCHHHHH
T ss_pred hcCCcccccCCCCCCCCCCccCCceEeCCC-------CCHHHHHHHHHhCC---CCEEEEEEeCCCCCCCCcCCCHHHHH
Confidence 1111 10 13455543 38999999997531 12345666555555898877 99
Q ss_pred HHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCccccCC
Q 010125 271 PLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKN 350 (517)
Q Consensus 271 eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl~~ 350 (517)
+|.++ ++||+++++|++|+++ ...........++ ..|.+ +++|+++.++.+|++++++. +.+.+.......
T Consensus 224 ~l~~l-~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~-~~di~--s~sK~l~~G~~~G~~~~~~~--~~~~~~~~~~~~-- 294 (424)
T 2e7u_A 224 ALHEA-KAYGVLLIADEVMTGF-RLAFGGATELLGL-KPDLV--TLGKILGGGLPAAAYAGRRE--IMEKVAPLGPVY-- 294 (424)
T ss_dssp HHHHG-GGGTCEEEEECTTTTT-TSSTTHHHHHHTC-CCSEE--EECGGGGTTSSCEEEEECHH--HHTTBTTTSSBC--
T ss_pred HHHHH-HHcCCEEEEecCcccc-ccchhHHHHHhCC-Ccchh--hhhhhhhCCcceEEEEEcHH--HHhhhcccCCcc--
Confidence 99999 9999999999999865 3221111001122 35655 56799988778999888642 222232100000
Q ss_pred ccccccccccCCCccccCCCCCCchHHH---HHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC---CCeEEecCCCeeEE
Q 010125 351 KATESMQVVDYKDWQITLSRRFRSLKLW---FVIRNYGVANLRHFLRSHVNMAKLFERLVSGD---KRFEIVFPCHFAVV 424 (517)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~sr~~~al~~~---~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~---~~~~l~~~~~~~~v 424 (517)
...+-....+... ++++.+.. .+++.++..++++++++.|+++ .++....++..+++
T Consensus 295 ---------------~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~ 357 (424)
T 2e7u_A 295 ---------------QAGTLSGNPLAMAAGLATLELLEE--NPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMI 357 (424)
T ss_dssp ---------------CCCTTCSCHHHHHHHHHHHHHHHH--CTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEE
T ss_pred ---------------cCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeeceEE
Confidence 0001112233333 33433322 2456777778888888888663 12311112344566
Q ss_pred EEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHH
Q 010125 425 CFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVV 504 (517)
Q Consensus 425 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l 504 (517)
.+.+.......... . ... + .....++.+.|.++|++. .+.. ...+|++ ...+++++++++++|
T Consensus 358 ~i~~~~~~~~~~~~----~-~~~-~----~~~~~~~~~~l~~~Gv~v-~~~~---~~~~~~~---~~~t~~~i~~~l~~l 420 (424)
T 2e7u_A 358 TVFFTEGPVVTFQD----A-RRT-D----TELFKRFFHGLLDRGIYW-PPSN---FEAAFLS---VAHREEDVEKTLEAL 420 (424)
T ss_dssp EEESSSSCCCSHHH----H-TTS-C----HHHHHHHHHHHHTTTEEC-CSSS---SSCEECC---TTCCHHHHHHHHHHH
T ss_pred EEEEeCCCCcchhh----h-ccc-C----HHHHHHHHHHHHHCCeEE-eccC---CCceEee---ccCCHHHHHHHHHHH
Confidence 66664310000000 0 000 0 123456778888888644 3321 1234543 456888999999999
Q ss_pred HHH
Q 010125 505 QQH 507 (517)
Q Consensus 505 ~~~ 507 (517)
+++
T Consensus 421 ~~~ 423 (424)
T 2e7u_A 421 RKA 423 (424)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 230
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.60 E-value=4.6e-15 Score=153.86 Aligned_cols=313 Identities=8% Similarity=-0.072 Sum_probs=190.2
Q ss_pred HHHHHHHHHhcc-ccc--ccccccCh-h---hHHHHHHHHHHHHHHcCC--CcccccCCCCceEEcCCchHHHHHHHHHH
Q 010125 107 AGFLGEMLSSGF-NIV--GFNWISSP-A---ATELENIVMDWLGQMLKL--PKSFLFSGNGGGVIQGTTCEAILCTLTAA 177 (517)
Q Consensus 107 ~~~~~~~l~~~~-n~~--~~~~~~sp-~---~~~lE~~v~~~l~~l~g~--~~~~~~~~~~~g~~t~ggt~a~~~al~~a 177 (517)
+..+.+.+...+ ... ...|.... + ..++++.+++|+.+..+. +++ .+++|+|+++++..++.+.
T Consensus 71 ~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~-------~iv~t~G~~~al~~~~~~l 143 (427)
T 2hox_A 71 EYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDR-------YIVFGVGVTQLIHGLVISL 143 (427)
T ss_dssp HHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTC-------EEEEESHHHHHHHHHHHHH
T ss_pred CHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCC-------EEEEeCCHHHHHHHHHHHH
Confidence 344455555544 222 22365555 5 788999999999876543 332 6899999999988776654
Q ss_pred HHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEee
Q 010125 178 RDRVLNKIGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCAT 257 (517)
Q Consensus 178 r~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t 257 (517)
... .. .....+++.|+++.++|.++...++..|+ +++. +.+|+++|++++++.+ .+|+++
T Consensus 144 ~~~--~~-~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~---~~~~--------~~~d~~~l~~~~~~~~------k~v~l~ 203 (427)
T 2hox_A 144 SPN--MT-ATPDAPESKVVAHAPFYPVFREQTKYFDK---KGYV--------WAGNAANYVNVSNPEQ------YIEMVT 203 (427)
T ss_dssp SCC--TT-TCTTSCCEEEEECSSCCHHHHHHHHHSCB---TTEE--------EEEEGGGGTTCSCGGG------EEEEEE
T ss_pred hhc--cc-cccCCCCCEEEEeCCCcccHHHHHHHcCC---eeee--------ecCCHHHHHHhhcCCc------eEEEEc
Confidence 100 00 00001667899999999999999999998 6653 3567788887776533 377888
Q ss_pred ccCCccccccChhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCC-CcceEEEEeCchh
Q 010125 258 IGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCCLWVKDPRA 336 (517)
Q Consensus 258 ~gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p-~~~g~l~~~~~~~ 336 (517)
.++|+||.+-+ +. ++ +++.+.|.++... ......-....+.+..++||.++.| ..+|+++++++..
T Consensus 204 ~p~NPtG~~~~-~~----l~--~~~~i~d~~~~~~------~~s~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~l 270 (427)
T 2hox_A 204 SPNNPEGLLRH-AV----IK--GCKSIYDMVYYWP------HYTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDESV 270 (427)
T ss_dssp SSCTTTCCCCC-CS----ST--TCEEEEECTTCST------TTSCCCSCBCCSEEEEEHHHHTSCGGGCCEEEEECCHHH
T ss_pred CCCCCcccccH-HH----Hc--CCCEEEeecccCC------CCCccccCCCceEEEEeChhcCCCCCceEEEEEECCHHH
Confidence 99999999988 42 33 6778888766321 1111110135789999999999744 5689999876554
Q ss_pred HHhhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHh--c-----------HHHHHHHHHHHHHHHHHH
Q 010125 337 LVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNY--G-----------VANLRHFLRSHVNMAKLF 403 (517)
Q Consensus 337 ~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~--g-----------~~g~~~~i~~~~~~a~~l 403 (517)
.. .+.....+.. .....+..+++...+ + .+-+++..++..++.+++
T Consensus 271 ~~-~l~~~~~~~~--------------------~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 329 (427)
T 2hox_A 271 YN-NLLNYMTKNT--------------------EGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNI 329 (427)
T ss_dssp HH-HHHHHHHHHT--------------------SSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHhcC--------------------CCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHH
Confidence 32 2211101100 001222223332222 1 123445667788889999
Q ss_pred HHHHhcCCCeEE--ec-----------CCCee-EEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHH-hcC
Q 010125 404 ERLVSGDKRFEI--VF-----------PCHFA-VVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESIN-ASG 468 (517)
Q Consensus 404 ~~~l~~~~~~~l--~~-----------~~~~~-~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g 468 (517)
.+.|++.+++++ +. .|+.+ .+.+++... ..++.+++. +.|
T Consensus 330 ~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~-------------------------~~~~~~~ll~~~g 384 (427)
T 2hox_A 330 TALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE-------------------------EDKDCYQTFQNGR 384 (427)
T ss_dssp HHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG-------------------------GGCSHHHHHHHTT
T ss_pred HHHHHhCcCccccccccccccccccccCCCCceEEEEECCCc-------------------------HHHHHHHHHHHCC
Confidence 999999888875 21 12223 344455321 123344443 567
Q ss_pred cEEEeeeeEC-CEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 010125 469 KAYMTHAVLG-GIYAIRFATGATLTEKRHVVVAWTVVQQHL 508 (517)
Q Consensus 469 ~~~~~~~~~~-g~~~lR~~~~~~~t~~~di~~l~~~l~~~~ 508 (517)
+...++..+. +..++|+|+.+ ++++++++++.|.++.
T Consensus 385 I~v~pg~~f~~~~~~~Ris~~~---~~e~l~~~l~~l~~~~ 422 (427)
T 2hox_A 385 INTQNGVGFEASSRYVRLSLIK---TQDDFDQLMYYLKDMV 422 (427)
T ss_dssp EECEEGGGGTSCTTEEEEECSS---CHHHHHHHHHHHHHHH
T ss_pred EEEcCCCccCCCCCEEEEEecC---CHHHHHHHHHHHHHHH
Confidence 6554444333 35789999963 6779999999888765
No 231
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.56 E-value=2e-13 Score=140.62 Aligned_cols=332 Identities=10% Similarity=0.001 Sum_probs=194.7
Q ss_pred HHHHHHHhccccc-ccccccChhhHHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcc
Q 010125 109 FLGEMLSSGFNIV-GFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGR 187 (517)
Q Consensus 109 ~~~~~l~~~~n~~-~~~~~~sp~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~ 187 (517)
.+.++.......+ ...|....+..++.+.+.+++-.- ..+.. ....+-|.|||.|...++......+
T Consensus 66 ~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~aia~~~~g~-~~~~~-----~~~~~qt~ggtga~~~a~~~l~~~~------ 133 (420)
T 4h51_A 66 VVRKAEQLLLDMNLDYEYLPISGYQPFIDEAVKIIYGN-TVELE-----NLVAVQTLSGTGAVSLGAKLLTRVF------ 133 (420)
T ss_dssp HHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHC----CGG-----GEEEEEEEHHHHHHHHHHHHHTTTS------
T ss_pred HHHHHHHHHhcCCCCCCCCCcCChHHHHHHHHHHhcCC-Ccccc-----ccceeeecCchHHHHHHHHHHHHhc------
Confidence 4444444444333 345888888999998888776321 11111 1135668889988877765543221
Q ss_pred cCCCCeEEEeCCCCchHHHHHHHHcCCCCCC-EEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 188 ENISKLIVYGSDQTHCALQKAAQIVGIDVKN-FRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 188 ~~~~~~~v~~s~~~H~s~~kaa~~~G~g~~~-v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
..+++.|+++++++.+....++..|+ + |...+....+++.+|.+.+.+.++..++ ...+++.+.++||||.+
T Consensus 134 -~~pgd~V~ip~P~w~~y~~i~~~aG~---~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~---~~~vll~~~p~NPtG~~ 206 (420)
T 4h51_A 134 -DAETTPIYLSDPTWPNHYGVVKAAGW---KNICTYAYYDPKTVSLNFEGMKKDILAAPD---GSVFILHQCAHNPTGVD 206 (420)
T ss_dssp -CTTTSCEEEEESCCTHHHHHHHHTTC---CCEEEEECEEGGGTEECHHHHHHHHHHSCS---SCEEEEESSSCTTTCCC
T ss_pred -CCCCCEEEEecCCchhHHHHHHHcCC---eEEEeeccccccccCCCHHHHHHHHhccCC---CcEEEEeCCCCCCCCCC
Confidence 11667799999999999999999998 6 4445543334678999999998876543 33567778899999988
Q ss_pred ---cChhHHHHHHHHhCCeEEcccccccccccCccccc-c---ccCCCCCCeeeeccccccCC-CCcceEEEEeCchh--
Q 010125 267 ---DPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRH-F---IDGVEGADSFSLNAHKWFFA-TLDCCCLWVKDPRA-- 336 (517)
Q Consensus 267 ---dpl~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~-~---~~g~~~aDsi~~~~hK~l~~-p~~~g~l~~~~~~~-- 336 (517)
+.+++|+++|++++++++.|.+|.++.....+... . ......--.++.++.|.++. ...+|++.+..+..
T Consensus 207 ~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~ 286 (420)
T 4h51_A 207 PSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTK 286 (420)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHH
T ss_pred CCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCceEEEEecccCHHH
Confidence 56889999999999999999999887543211110 0 00011112455679998764 47789887754421
Q ss_pred HHhhhcCCccccCCccccccccccCCCccccCCCCCCchHHHHHHHHh--------cHHHHHHHHHHHHHHHHHHHHHHh
Q 010125 337 LVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNY--------GVANLRHFLRSHVNMAKLFERLVS 408 (517)
Q Consensus 337 ~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~--------g~~g~~~~i~~~~~~a~~l~~~l~ 408 (517)
..+... ....+... +..+ ..+.....+...+ -.+-++.+.++..++++.|.+.|+
T Consensus 287 ~~~~~~-~l~~~~r~-------------~~s~---~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~ 349 (420)
T 4h51_A 287 RADVKS-VMDSLIRE-------------EYTC---PPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELL 349 (420)
T ss_dssp HHHHHH-HHHHHHHT-------------TTSS---CCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHhhhc-------------ccCc---chHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111110 00000000 0000 0112222222222 133456677888888999999998
Q ss_pred cCC--C-eEEecCCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEE
Q 010125 409 GDK--R-FEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRF 485 (517)
Q Consensus 409 ~~~--~-~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~ 485 (517)
+.. + |..+ .++.++++| .+. + .+..+.|.+.|+ ++.+ +| ||
T Consensus 350 ~~g~~~~~~~i-~~q~GmF~~--~gl-----------------s--------~e~v~~L~e~~V-y~~~---~g----Ri 393 (420)
T 4h51_A 350 RLQTPGSWEHV-INQIGMFSF--LGL-----------------S--------KAQCEYCQNHNI-FITV---SG----RA 393 (420)
T ss_dssp HTTCSSCCTHH-HHCCSSEEE--CCC-----------------C--------HHHHHHHHHTTE-ECCT---TC----EE
T ss_pred HhCCCCCCCee-cCCCceEEe--cCc-----------------C--------HHHHHHHHhCCE-EEcC---CC----EE
Confidence 752 1 2222 233455554 232 1 111244555664 4433 22 99
Q ss_pred EecCCCCcHHHHHHHHHHHHHHHHHHHhh
Q 010125 486 ATGATLTEKRHVVVAWTVVQQHLEAFQSA 514 (517)
Q Consensus 486 ~~~~~~t~~~di~~l~~~l~~~~~~l~~~ 514 (517)
|+.+ .+++.|+++.++|.++.+++.+|
T Consensus 394 s~Ag--l~~~ni~~~a~aI~~vvr~i~re 420 (420)
T 4h51_A 394 NMAG--LTHETALMLAQTINDAVRNVNRE 420 (420)
T ss_dssp EGGG--CCHHHHHHHHHHHHHHHC-----
T ss_pred Eecc--CCHHHHHHHHHHHHHHHHHhhcC
Confidence 9853 46779999999999999887664
No 232
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=99.39 E-value=5.3e-11 Score=123.23 Aligned_cols=307 Identities=11% Similarity=0.012 Sum_probs=168.2
Q ss_pred HHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHHc
Q 010125 133 ELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQIV 212 (517)
Q Consensus 133 ~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~~ 212 (517)
.+|.++.+.+++++.-- ....|+++|||||..|+..+|... | .+.+|......|-...-+....
T Consensus 127 ~~~~~lae~l~~~~p~~--------~~v~f~~SGsEA~e~AiklAr~~t----g----r~~ii~~~~~yHG~t~~~~~~~ 190 (454)
T 4ao9_A 127 LLEGRLARLICERFPQI--------EQLRFTNSGTEANLMALTAALHFT----G----RRKIVVFSGGYHGGVLGFGARP 190 (454)
T ss_dssp SSHHHHHHHHHHHSTTC--------SEEEEESSHHHHHHHHHHHHHHHH----T----CCEEEEETTCBCSTTCBBSSSB
T ss_pred HHHHHHHHHHHHhCCCC--------CEEEEeCchHHHHHHHHHHHHhcc----c----CCeEEEEeCCcCCccccccccc
Confidence 34556667777776422 257999999999999999998753 1 2334444444553221110001
Q ss_pred CCC--CCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccC----hhHHHHHHHHhCCeEEcc
Q 010125 213 GID--VKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVD 286 (517)
Q Consensus 213 G~g--~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idp----l~eI~~i~~~~gi~lhvD 286 (517)
+-. ...+..+|. -|++++++.+++... ...+|++.-.....|.+-| +++|.++|++||++|++|
T Consensus 191 ~~~~~~~~~~~~p~-------nd~~~l~~~l~~~~~---~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~D 260 (454)
T 4ao9_A 191 SPTTVPFDFLVLPY-------NDAQTARAQIERHGP---EIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFD 260 (454)
T ss_dssp CTTSCCSEEEEECT-------TCHHHHHHHHHHTGG---GEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEE
T ss_pred cCccCCCCcccCCC-------chHHHHHHHHhhcCC---ceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEE
Confidence 100 012333332 288999999976432 2446666655666788877 999999999999999999
Q ss_pred cccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCccccCCccccccccccCCCccc
Q 010125 287 AAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQI 366 (517)
Q Consensus 287 aA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~ 366 (517)
.++.| ........-.-|+ ..|.+++ .|.++..++.|++..+++ +-+.+......+..
T Consensus 261 EV~tG--R~G~~~a~e~~gv-~PDi~t~--gK~lggG~Piga~~~~~e--i~~~~~~~~~~~~h---------------- 317 (454)
T 4ao9_A 261 EVMTS--RLAPHGLANKLGI-RSDLTTL--GKYIGGGMSFGAFGGRAD--VMALFDPRTGPLAH---------------- 317 (454)
T ss_dssp CTTGG--GGSTTCHHHHHTC-CCSEEEE--EGGGGTTSSCEEEEECHH--HHGGGCTTTCSCCC----------------
T ss_pred CCCcC--CCccccchhccCC-CCcEEEe--ccccCCCCcceeeeeHHH--HHHHHhhccCCccc----------------
Confidence 99864 2221111111233 4687765 588877778898888654 22333221111110
Q ss_pred cCCCCCCch---HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC----CC-eEEecCCCeeEEEEEecCCCcchhhh
Q 010125 367 TLSRRFRSL---KLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGD----KR-FEIVFPCHFAVVCFRVSPSPVLMDKL 438 (517)
Q Consensus 367 ~~sr~~~al---~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~----~~-~~l~~~~~~~~v~f~~~~~~~~~~~~ 438 (517)
..+-...++ +..++|+.+-.+ +..++..++.++|++.|+++ +- .++-. ...++.+.+.....+....
T Consensus 318 ~~T~~gnPla~AAala~L~~l~~~---~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg--~G~m~gi~f~~~~~~~~~~ 392 (454)
T 4ao9_A 318 SGTFNNNVMTMAAGYAGLTKLFTP---EAAGALAERGEALRARLNALCANEGVAMQFTG--IGSLMNAHFVQGDVRSSED 392 (454)
T ss_dssp CCTTTTCHHHHHHHHHHHHHTSCH---HHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEE--ETTEEEEESCCSCCCSGGG
T ss_pred cCCCCCCHHHHHHHHHHHHHHhcc---ChhHHHHHHHHHHHHHHHHHHhhCCCCEEEee--eceEEEEEEecCCCCCHHH
Confidence 111112333 334455555443 34556666777777776542 21 12211 1223444443321110000
Q ss_pred hhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 010125 439 KTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHLEAFQ 512 (517)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l~ 512 (517)
....+ ......+...|.++|+ ++.+. + ++.+ +...|++|||+++++|+++..+..
T Consensus 393 ------~~~~d----~~~~~~~~~~ll~~Gv-~~~p~---~----~~~~-s~~~T~~dId~~l~al~~~l~~~~ 447 (454)
T 4ao9_A 393 ------LAAVD----GRLRQLLFFHLLNEDI-YSSPR---G----FVVL-SLPLTDADIDRYVAAIGSFIGGHG 447 (454)
T ss_dssp ------GTTCC----HHHHHHHHHHHHHTTE-ECCTT---C----EEEC-CTTCCHHHHHHHHHHHHHHHHHSG
T ss_pred ------HHhhh----HHHHHHHHHHHHHCCE-EEcCC---C----CEEE-eCCCCHHHHHHHHHHHHHHHHhcc
Confidence 00000 2344567777888885 44332 2 2233 233578899999999999987654
No 233
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=99.08 E-value=3.7e-14 Score=147.79 Aligned_cols=309 Identities=10% Similarity=-0.043 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCC-CchHHHHHH-
Q 010125 132 TELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQ-THCALQKAA- 209 (517)
Q Consensus 132 ~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~-~H~s~~kaa- 209 (517)
+..+.++.+.|+++++ ..+ ..+|++|||+||..|+.++|... ++..|++.+. .|-+...+.
T Consensus 139 ~~~~~~Lae~L~~~~p-~~~-------~v~~~nSGseA~~~Aik~ar~~t---------gr~~ii~~~~~yHG~~~~~~s 201 (465)
T 2yky_A 139 TENEALFAEAVCDRFP-SID-------LVRFTNSGTEANLMALATATAIT---------GRKTVLAFDGGYHGGLLNFAS 201 (465)
Confidence 4455566677777773 112 57899999999999999887431 2233444444 444333222
Q ss_pred --HHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccC----hhHHHHHHHHhCCeE
Q 010125 210 --QIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWV 283 (517)
Q Consensus 210 --~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idp----l~eI~~i~~~~gi~l 283 (517)
...|+.. .++.+|. -|+++|+++|++.. ..+.+|++....+++|.+-| +++|.++|++||++|
T Consensus 202 g~~~~g~~~-~~~~~~~-------~d~~~l~~~l~~~~---~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~ll 270 (465)
T 2yky_A 202 GHAPTNAPY-HVVLGVY-------NDVEGTADLLKRHG---HDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALL 270 (465)
Confidence 1122211 1223332 27899999997421 12335665554556897766 999999999999999
Q ss_pred EcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCC--c-cccCCcccccccccc
Q 010125 284 HVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTN--P-EYLKNKATESMQVVD 360 (517)
Q Consensus 284 hvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~--~-~yl~~~~~~~~~~~~ 360 (517)
++|++|. + ...+.......++ ..|.+ ++.|+++.++..|+++.++. +.+.+... . -+..
T Consensus 271 I~DEv~~-~-r~g~~~a~~~~gv-~pDi~--t~sK~lg~G~piG~v~~~~~--i~~~l~~~~~g~~~~~----------- 332 (465)
T 2yky_A 271 IFDEVMT-S-RLSGGGAQEMLGI-SADLT--TLGKYIGGGMSFGAFGGRRD--LMERFDPARDGAFAHA----------- 332 (465)
Confidence 9999998 4 2111100000122 35655 46799988777888877643 21222110 0 0110
Q ss_pred CCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC-CeEEe--cCCCeeEEEEEecCCCcchhh
Q 010125 361 YKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDK-RFEIV--FPCHFAVVCFRVSPSPVLMDK 437 (517)
Q Consensus 361 ~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~~-~~~l~--~~~~~~~v~f~~~~~~~~~~~ 437 (517)
.++ .+......+..++++.+..+ ++.++..++.+++++.|+++. .+.+. ......++.|.+........
T Consensus 333 ---~T~-~~npla~aAa~aaL~~l~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~- 404 (465)
T 2yky_A 333 ---GTF-NNNILTMSAGHAALTQIYTR---QAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSA- 404 (465)
Confidence 011 11112222333445544333 356677778888888886641 12221 12334556665542100000
Q ss_pred hhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 010125 438 LKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHLEAFQ 512 (517)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l~ 512 (517)
......-.....++.+.|.++|.++.+. .+. . ++ ...+++||++++++|.++.+++.
T Consensus 405 ---------~~~~~~d~~~~~~~~~~ll~~GV~v~p~-~~~---~--~s---~~~t~edid~~l~~l~~~l~~~~ 461 (465)
T 2yky_A 405 ---------GDVRAADQQLKELFFFHMLRKGIYLAPR-GMY---A--LS---LEIADAGRDAFAEALADFIGEQR 461 (465)
Confidence 0000000123456777888888754332 221 1 33 34578899999999999887664
No 234
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=99.31 E-value=1.8e-09 Score=112.01 Aligned_cols=319 Identities=13% Similarity=0.026 Sum_probs=175.4
Q ss_pred HHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeCCCCchHHHHHHHHcC
Q 010125 134 LENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQIVG 213 (517)
Q Consensus 134 lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s~~~H~s~~kaa~~~G 213 (517)
.+.++.+.|.++...+.. ...+|+++|||||..|+..||... + ...+|.....-|-...-+....|
T Consensus 108 ~~~~lae~L~~~~p~~~~------~~v~f~~sGsEA~e~AlklAr~~t----~----r~~ii~~~~~yHG~t~~als~t~ 173 (456)
T 4atq_A 108 GYVAVTEQLNRLTPGDHA------KRTVLFNSGAEAVENAVKVARLAT----G----RDAVVAFDHAYHGRTNLTMALTA 173 (456)
T ss_dssp HHHHHHHHHHHHSSCSSC------EEEEEESSHHHHHHHHHHHHHHHH----C----CCEEEEETTCCCCSSHHHHHHCC
T ss_pred HHHHHHHHHHHhCCCCCC------cEEEEeCChHHHHHHHHHHHhhhh----c----CCeEEEEecccCCcccccccccc
Confidence 344566778887643221 146889999999999999998753 1 23334444445543333333332
Q ss_pred CC----------CCCEEEEecCCC----CCcccCHHHHHHHHHHhHh--cCCcceEEEeeccCCccccccC----hhHHH
Q 010125 214 ID----------VKNFRAIKTTKS----SSYGLSPDSLMAQINSDVE--VGLIPLFLCATIGTTAITAVDP----LKPLC 273 (517)
Q Consensus 214 ~g----------~~~v~~vp~d~~----~~~~~d~~~Le~~i~~~~~--~g~~p~~vv~t~gtt~~G~idp----l~eI~ 273 (517)
-. ...+..+|.... ....-+.+.+++.++...+ .+..+.+|++.-.....|.+-| +++|.
T Consensus 174 ~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr 253 (456)
T 4atq_A 174 KAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALS 253 (456)
T ss_dssp CCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHH
T ss_pred CccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHH
Confidence 21 124666765310 0112345555555543221 2234556666655555677644 89999
Q ss_pred HHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCCCcceEEEEeCchhHHhhhcCCccccCCccc
Q 010125 274 DVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKAT 353 (517)
Q Consensus 274 ~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~ 353 (517)
++|++||+.|++|..+.|+.....-+..-.-|+ ..|.+++. |.++..+..|.++.+++- .+.+. +....
T Consensus 254 ~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv-~PDivt~g--K~lggg~P~~av~~~~~i--~~~~~--~~~~~---- 322 (456)
T 4atq_A 254 EWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGV-VPDIITMA--KGIAGGLPLSAITGRADL--LDAVH--PGGLG---- 322 (456)
T ss_dssp HHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTC-CCSEEEEC--GGGGTTSSCEEEEEEHHH--HTTSC--TTSSC----
T ss_pred HHHhhcCCceEecccccccCCccccccccccCC-CCchhhhh--hcccCcCCceeeEecHHH--Hhccc--ccCCC----
Confidence 999999999999999988654332222212234 57988875 778777788998887542 12221 11110
Q ss_pred cccccccCCCccccCCCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhc----CCC--eEEecCC--CeeEEE
Q 010125 354 ESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSG----DKR--FEIVFPC--HFAVVC 425 (517)
Q Consensus 354 ~~~~~~~~~~~~~~~sr~~~al~~~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~----~~~--~~l~~~~--~~~~v~ 425 (517)
.|+ .+.+.......++++.+-.+++ .++..++.++|.+.|++ .+. ..++.+. ...++.
T Consensus 323 ----------~Tf-~gnpla~aaala~L~~i~~~~l---~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~g 388 (456)
T 4atq_A 323 ----------GTY-GGNPVACAAALAAIDTMEQHDL---NGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLA 388 (456)
T ss_dssp ----------CSS-SSCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEE
T ss_pred ----------CCC-CCChHHHHhhHHHHHHHhhccH---HHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEE
Confidence 011 1111122333444555544444 44455566666665544 221 1112111 112344
Q ss_pred EEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHH
Q 010125 426 FRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQ 505 (517)
Q Consensus 426 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~ 505 (517)
+.+..+.. ... ......++.+.+.++|.+..... .. ...||++. ....++++|++++++|.
T Consensus 389 iel~~~~~-------------~~~---~~~~~~~v~~~~~~~Gvl~~~~g-~~-~~~irl~P-pL~it~~~id~~l~~l~ 449 (456)
T 4atq_A 389 IELVQPGS-------------KEP---NAELTKAVAAACLKEGVIILTCG-TY-GNVIRLLP-PLVISDELLIDGLEVLA 449 (456)
T ss_dssp EEEBCTTS-------------CCB---CHHHHHHHHHHHHHTTEECEEEC-TT-SCEEEECC-CTTCCHHHHHHHHHHHH
T ss_pred EEEecCCC-------------CCc---CHHHHHHHHHHHHHCCCEEEecC-CC-CCEEEEEC-CCCCCHHHHHHHHHHHH
Confidence 54432210 000 02456778888889997543322 12 24799986 34678889999999998
Q ss_pred HHHHH
Q 010125 506 QHLEA 510 (517)
Q Consensus 506 ~~~~~ 510 (517)
++.+.
T Consensus 450 ~al~a 454 (456)
T 4atq_A 450 AAIKA 454 (456)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88653
No 235
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=99.30 E-value=4.5e-10 Score=117.10 Aligned_cols=331 Identities=10% Similarity=0.024 Sum_probs=180.2
Q ss_pred HHHHHHHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCe-EEEeCCCCchHHHHHHH
Q 010125 132 TELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKL-IVYGSDQTHCALQKAAQ 210 (517)
Q Consensus 132 ~~lE~~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~-~v~~s~~~H~s~~kaa~ 210 (517)
++.+.++.+.|.++...+-+ ..+|+++|||||..|+..||....++ |.. .+. +|-....-|-...-++.
T Consensus 110 ~~~~~~lAe~L~~~~p~~~~-------~v~f~~sGsEA~e~AiKlAr~~~~~~-g~~--~r~~ii~~~~~yHG~t~~a~s 179 (473)
T 4e3q_A 110 SDQTVMLSEKLVEVSPFDSG-------RVFYTNSGSEANDTMVKMLWFLHAAE-GKP--QKRKILTRWNAYHGVTAVSAS 179 (473)
T ss_dssp EHHHHHHHHHHHHHSSCSSC-------EEEEESSHHHHHHHHHHHHHHHHHHT-TCT--TCCEEEEETTCCCCSSHHHHH
T ss_pred CHHHHHHHHHHHhhCCCCcc-------EEEEeCchHHHHHHHHHHHHHHHHhc-CCC--CcceEEEeeceECCCcccccc
Confidence 34455677888888754432 57999999999999999998654332 221 233 33344445544333443
Q ss_pred HcC--------CCCCCEEEEecCCC----CCcc-------cCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccC---
Q 010125 211 IVG--------IDVKNFRAIKTTKS----SSYG-------LSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDP--- 268 (517)
Q Consensus 211 ~~G--------~g~~~v~~vp~d~~----~~~~-------~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idp--- 268 (517)
..| .....+..++.... ..+. -..++|++.|.+.. ...+.+|++.-.....|.+-|
T Consensus 180 ~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~--~~~iAavi~EPiqg~gG~~~p~~~ 257 (473)
T 4e3q_A 180 MTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREG--ADTIAGFFAEPVMGAGGVIPPAKG 257 (473)
T ss_dssp HSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBSTTTSBCCCTT
T ss_pred ccccccccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhC--CCceEEEEeCCccCCCCceeCCHH
Confidence 333 22224555543210 0011 12345555554321 123445666655555676644
Q ss_pred -hhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCeeeeccccccCCC-CcceEEEEeCchhHHhhhcCCcc
Q 010125 269 -LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCCLWVKDPRALVSSLSTNPE 346 (517)
Q Consensus 269 -l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~~hK~l~~p-~~~g~l~~~~~~~~~~~~~~~~~ 346 (517)
+++|.++|++||+.|++|..+.|+.....-+..-.-++ ..|.+++ -|.++.. ++.|+++++++- .+.+.....
T Consensus 258 fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv-~PDi~t~--~K~l~gG~~Pl~av~~~~~i--~~~~~~~~~ 332 (473)
T 4e3q_A 258 YFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDF-TPDAIIS--SKNLTAGFFPMGAVILGPEL--SKRLETAIE 332 (473)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTC-CCSEEEE--CGGGGTTSSCCEEEEECHHH--HHHHHHHHH
T ss_pred HHHHHHHHhcccceEEeccCccccCCcccchhHHHhcCC-CCChHHh--cccccCCCCCcccccccHHH--HHHhccccc
Confidence 89999999999999999999988744332222112233 5788875 5888766 678888887652 122211000
Q ss_pred ccCCccccccccccCCCccccCCCCCCchHH---HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC---CCeEEecCCC
Q 010125 347 YLKNKATESMQVVDYKDWQITLSRRFRSLKL---WFVIRNYGVANLRHFLRSHVNMAKLFERLVSGD---KRFEIVFPCH 420 (517)
Q Consensus 347 yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~---~~~l~~~g~~g~~~~i~~~~~~a~~l~~~l~~~---~~~~l~~~~~ 420 (517)
... .+....+-...+++. .++++.+-.++ .+++..++.++|.+.|+++ |.+.=+ .-.
T Consensus 333 ~~~-------------~~~hg~T~~Gnpla~Aaala~L~~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~v~~v-RG~ 395 (473)
T 4e3q_A 333 AIE-------------EFPHGFTASGHPVGCAIALKAIDVVMNEG---LAENVRRLAPRFEERLKHIAERPNIGEY-RGI 395 (473)
T ss_dssp HHS-------------CCCCCCTTTTCHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHTTSTTEEEE-EEE
T ss_pred ccc-------------ccccCCCCCCCcchhhhhhhhhhhhcccc---HHHHHHHHHHHHHHHHHHHhcCCCeeEE-eec
Confidence 000 000011111233333 34444444444 3455556777777777653 433111 001
Q ss_pred eeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHH
Q 010125 421 FAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVA 500 (517)
Q Consensus 421 ~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l 500 (517)
..++.+.+..... .+...+ .......++.+.+.++|.+.. +. | ..+|++. ....+++|||++
T Consensus 396 Gl~~gielv~~~~----------~~~~~~--~~~~~~~~~~~~~~~~Gll~~-~~---g-~~i~l~P-PL~it~~eid~~ 457 (473)
T 4e3q_A 396 GFMWALEAVKDKA----------SKTPFD--GNLSVSERIANTCTDLGLICR-PL---G-QSVVLCP-PFILTEAQMDEM 457 (473)
T ss_dssp TTEEEEEECSBTT----------TTBCCC--GGGCHHHHHHHHHHHTTEECE-EE---T-TEEEECC-CTTCCHHHHHHH
T ss_pred ceEEEEEEecCcc----------cccccc--ccHHHHHHHHHHHHHCCcEEE-ec---C-CEEEEeC-CCCCCHHHHHHH
Confidence 1234444432210 000000 001235677788888897542 21 2 3688876 356788999999
Q ss_pred HHHHHHHHHHHHhh
Q 010125 501 WTVVQQHLEAFQSA 514 (517)
Q Consensus 501 ~~~l~~~~~~l~~~ 514 (517)
+++|.++.+++.+|
T Consensus 458 ~~~l~~al~~v~ae 471 (473)
T 4e3q_A 458 FDKLEKALDKVFAE 471 (473)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988765
No 236
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=99.14 E-value=7.7e-10 Score=123.01 Aligned_cols=328 Identities=13% Similarity=0.003 Sum_probs=166.9
Q ss_pred HHHHHHHHHcCCCcccccCCCCceEEcCCchHHHHHHHHHHHHHHHHHhcccC------CCC-eEEEeCCCCchHHHHHH
Q 010125 137 IVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGREN------ISK-LIVYGSDQTHCALQKAA 209 (517)
Q Consensus 137 ~v~~~l~~l~g~~~~~~~~~~~~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~------~~~-~~v~~s~~~H~s~~kaa 209 (517)
++.+.|+++.+-+.- ...+|+++||+||..||..|+..+....|... .++ .+|......|-+..-++
T Consensus 428 ~Lae~L~~~~p~~~l------~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gal 501 (831)
T 4a0g_A 428 KCAELLLDGVGKGWA------SRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAM 501 (831)
T ss_dssp HHHHHHHHTTTTTTC------CEEEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHH
T ss_pred HHHHHHHHhCCCCCC------CEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeee
Confidence 455667776652211 15799999999999999999543333333211 023 34445555676776776
Q ss_pred HHcCCCC-------------------------CCEEEEecCCC------CC-cccC------------------HHHHHH
Q 010125 210 QIVGIDV-------------------------KNFRAIKTTKS------SS-YGLS------------------PDSLMA 239 (517)
Q Consensus 210 ~~~G~g~-------------------------~~v~~vp~d~~------~~-~~~d------------------~~~Le~ 239 (517)
.+.|... ..+..++.... +. ..-+ .++|++
T Consensus 502 s~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 581 (831)
T 4a0g_A 502 EAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSK 581 (831)
T ss_dssp HTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHH
T ss_pred eccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHHHH
Confidence 6665310 01112222100 00 0001 256777
Q ss_pred HHHHhH--hcCCcceEEEeecc-CCccccccC----hhHHHHHHHHhCCeEEcccccccccccCccccccccCCCCCCee
Q 010125 240 QINSDV--EVGLIPLFLCATIG-TTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSF 312 (517)
Q Consensus 240 ~i~~~~--~~g~~p~~vv~t~g-tt~~G~idp----l~eI~~i~~~~gi~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi 312 (517)
.|++.. .....+.+|++.-. ....|.+-+ +++|.++|++||++|++|.++.|+......+..-..|+ ..|.+
T Consensus 582 ~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv-~PDii 660 (831)
T 4a0g_A 582 HLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGC-KPDIA 660 (831)
T ss_dssp HC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSS-CCSEE
T ss_pred HHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCC-CCcEE
Confidence 775421 11223445555543 455566654 99999999999999999999887643322221111233 46776
Q ss_pred eeccccccCCC-CcceEEEEeCchhHHhhhcCCccccCCccccccccccCCCccccCCCCCCchHH---HHHHHHhcHHH
Q 010125 313 SLNAHKWFFAT-LDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKL---WFVIRNYGVAN 388 (517)
Q Consensus 313 ~~~~hK~l~~p-~~~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~al~~---~~~l~~~g~~g 388 (517)
| +.|.++.. ...|+++++++ +.+.|...... ..+....+....++.. .++++.+-.+.
T Consensus 661 t--lsK~L~gG~~Plgav~~~~~--i~~~~~~~~~~--------------~~~~hg~T~~g~Pla~Aaala~L~~i~~~~ 722 (831)
T 4a0g_A 661 C--FAKLLTGGMVPLAVTLATDA--VFDSFSGDSKL--------------KALLHGHSYSAHAMGCATAAKAIQWFKDPE 722 (831)
T ss_dssp E--ECGGGGTTSSCCEEEEECHH--HHHTTCSSCGG--------------GSCCCCCTTTTCHHHHHHHHHHHHHHHCTT
T ss_pred E--EecccccCccCcEEEEECHH--HHHHHhccccc--------------ccceeecCCcccHHHHHHHHHHHHHHHhhH
Confidence 5 66998765 46788888654 22333221100 0000011112233333 33444432222
Q ss_pred HHHHHHHH-HHH----HHHHHHHHhcCCCeEEecCCCeeEEEEEecCCCcchhhhhhhhhccccchHHHHHHHHHHHHHH
Q 010125 389 LRHFLRSH-VNM----AKLFERLVSGDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLES 463 (517)
Q Consensus 389 ~~~~i~~~-~~~----a~~l~~~l~~~~~~~l~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 463 (517)
+.+.+.+. ..+ .+.+.+.+++.|.+.-+ .....++.+.+..... ..........++.+.
T Consensus 723 l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~v-rg~Gl~~~iel~~~~~---------------~~~~~~~~a~~~~~~ 786 (831)
T 4a0g_A 723 TNHNITSQGKTLRELWDEELVQQISSHSAVQRV-VVIGTLFALELKADAS---------------NSGYASLYAKSLLIM 786 (831)
T ss_dssp TCTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEE-EEETTEEEEEEC------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCceeE-eecccEEEEEEecCcc---------------ccccchHHHHHHHHH
Confidence 22222110 011 22344556666665433 1223445555543210 000001234567788
Q ss_pred HHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 010125 464 INASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHLEAF 511 (517)
Q Consensus 464 l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~di~~l~~~l~~~~~~l 511 (517)
+.++|.+. .+. + ..+|++. .+.++++||++++++|.++.+++
T Consensus 787 l~e~Gv~v-~p~---g-~~lrl~p-p~~~t~e~id~~~~~l~~~l~~l 828 (831)
T 4a0g_A 787 LREDGIFT-RPL---G-NVIYLMC-GPCTSPEICRRLLTKLYKRLGEF 828 (831)
T ss_dssp HHHTTEEC-CCB---T-TEEEEEC-CTTCCHHHHHHHHHHHHHHHTTT
T ss_pred HHHCCcEE-Eec---C-CEEEEEC-CCCCCHHHHHHHHHHHHHHHHHh
Confidence 88888654 322 2 5799987 45678999999999998876543
No 237
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=75.21 E-value=14 Score=33.42 Aligned_cols=75 Identities=8% Similarity=0.065 Sum_probs=53.8
Q ss_pred chHHHHHHHHc-CCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc--cChhHHHHHHHH
Q 010125 202 HCALQKAAQIV-GIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV--DPLKPLCDVAKQ 278 (517)
Q Consensus 202 H~s~~kaa~~~-G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i--dpl~eI~~i~~~ 278 (517)
-.+++.|+.++ .+|...+.+.|.. |.-..++|+..-+...++|. .+. |||-| |++++|.++|.+
T Consensus 144 ~V~vetAiaml~dmG~~SvKffPm~----Gl~~l~E~~avAka~a~~g~-----~lE----PTGGIdl~N~~~I~~i~l~ 210 (249)
T 3m0z_A 144 IVPLETAIALLKDMGGSSIKYFPMG----GLKHRAEFEAVAKACAAHDF-----WLE----PTGGIDLENYSEILKIALD 210 (249)
T ss_dssp EEEHHHHHHHHHHTTCCEEEECCCT----TTTTHHHHHHHHHHHHHTTC-----EEE----EBSSCCTTTHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHcCCCeeeEeecC----CcccHHHHHHHHHHHHHcCc-----eEC----CCCCccHhhHHHHHHHHHH
Confidence 34567766554 4666789999984 35578899888888887772 222 67766 689999999999
Q ss_pred hCCeEEccccc
Q 010125 279 FGIWVHVDAAY 289 (517)
Q Consensus 279 ~gi~lhvDaA~ 289 (517)
.|+..++=-.|
T Consensus 211 aGv~~viPHIY 221 (249)
T 3m0z_A 211 AGVSKIIPHIY 221 (249)
T ss_dssp HTCSCBCCBCC
T ss_pred cCCCeeccccc
Confidence 99876554334
No 238
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=66.28 E-value=26 Score=32.83 Aligned_cols=66 Identities=11% Similarity=0.004 Sum_probs=42.2
Q ss_pred EEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccC
Q 010125 194 IVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDP 268 (517)
Q Consensus 194 ~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idp 268 (517)
+++++ -.--...+.++-+|- ++..+.+|- -|.+++++.+++..++-.+.=++|-++|....+.+.+
T Consensus 56 V~i~~-r~~~~l~~~~~~~g~---~~~~~~~Dv-----~~~~~v~~~~~~~~~~~G~iDiLVNNAG~~~~~~~~~ 121 (273)
T 4fgs_A 56 VFITG-RRKDVLDAAIAEIGG---GAVGIQADS-----ANLAELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGE 121 (273)
T ss_dssp EEEEE-SCHHHHHHHHHHHCT---TCEEEECCT-----TCHHHHHHHHHHHHHHHSCEEEEEECCCCCCCCCTTS
T ss_pred EEEEE-CCHHHHHHHHHHcCC---CeEEEEecC-----CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhh
Confidence 44444 344456666777776 788888874 3778888888766543223446777888766665544
No 239
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=63.98 E-value=12 Score=33.38 Aligned_cols=51 Identities=16% Similarity=0.098 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEE
Q 010125 234 PDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVH 284 (517)
Q Consensus 234 ~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lh 284 (517)
...=|.++.=.+-+|..|..|++..-.+..|..-.++++.++|++||+.++
T Consensus 143 ~GHTEAavdLarLAGl~Pa~vicEi~~~~dG~mar~~~l~~fA~~h~l~ii 193 (204)
T 1tks_A 143 RGHTEAAVQLSTLAGLQPAGVICELVRDEDGLMMRLDDCIQFGKKHGIKII 193 (204)
T ss_dssp CCHHHHHHHHHHHTTSCSBEEEEEBBCTTTCCBCBHHHHHHHHHHHTCCEE
T ss_pred CCcHHHHHHHHHHcCCCceEEEEEEeECCCCCcCCHHHHHHHHHHcCCcEE
Confidence 334456666566689999999888875678999999999999999999875
No 240
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=58.04 E-value=57 Score=30.05 Aligned_cols=65 Identities=12% Similarity=0.029 Sum_probs=41.2
Q ss_pred EEeCCCCchHHHHHHH---HcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcccccc
Q 010125 195 VYGSDQTHCALQKAAQ---IVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVD 267 (517)
Q Consensus 195 v~~s~~~H~s~~kaa~---~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~id 267 (517)
|++.+..-....+.++ -.|. ++..+.+|- -|.+++++.+++..++..++=++|-++|....+.+.
T Consensus 36 Vvi~~~~~~~~~~~~~~l~~~g~---~~~~~~~Dv-----~~~~~v~~~~~~~~~~~G~iDiLVNNAG~~~~~~~~ 103 (255)
T 4g81_D 36 VILNDIRATLLAESVDTLTRKGY---DAHGVAFDV-----TDELAIEAAFSKLDAEGIHVDILINNAGIQYRKPMV 103 (255)
T ss_dssp EEECCSCHHHHHHHHHHHHHTTC---CEEECCCCT-----TCHHHHHHHHHHHHHTTCCCCEEEECCCCCCCCCGG
T ss_pred EEEEECCHHHHHHHHHHHHhcCC---cEEEEEeeC-----CCHHHHHHHHHHHHHHCCCCcEEEECCCCCCCCChh
Confidence 4444444334444433 3355 788888773 478889888887766544555788888877666554
No 241
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=53.51 E-value=28 Score=31.01 Aligned_cols=51 Identities=18% Similarity=0.126 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhHhcCCcceEEEeecc-CCccccccChhHHHHHHHHhCCeEE
Q 010125 234 PDSLMAQINSDVEVGLIPLFLCATIG-TTAITAVDPLKPLCDVAKQFGIWVH 284 (517)
Q Consensus 234 ~~~Le~~i~~~~~~g~~p~~vv~t~g-tt~~G~idpl~eI~~i~~~~gi~lh 284 (517)
...=|.++.=.+-+|..|..|++... .+..|..-..+++.++|++||+.++
T Consensus 142 ~GhTEaavdLarlAGl~Pa~vicEiv~~~~dG~mar~~~l~~fA~~h~l~~i 193 (206)
T 3mio_A 142 PGHTEAAVDLARMAGLQPAGAICEIVSQKDEGSMAHTDELRVFADEHGLALI 193 (206)
T ss_dssp CCHHHHHHHHHHHTTSCSBEEEEEBBCSSSTTSBCCHHHHHHHHHHHTCEEE
T ss_pred CChHHHHHHHHHHcCCCceEEEEEEeeeCCCCCcCCHHHHHHHHHHcCCcEE
Confidence 34556677666678999998888772 4467999999999999999999885
No 242
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A
Probab=53.07 E-value=74 Score=29.19 Aligned_cols=65 Identities=11% Similarity=-0.066 Sum_probs=36.8
Q ss_pred EEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcccccc
Q 010125 194 IVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVD 267 (517)
Q Consensus 194 ~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~id 267 (517)
+++++ .......+.+..+|. ++..+.+|- -|.+.+++++++..+....+=+||.++|....+.+.
T Consensus 54 V~~~~-r~~~~~~~~~~~~~~---~~~~~~~Dv-----~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~ 118 (266)
T 3grp_A 54 VGLHG-TREDKLKEIAADLGK---DVFVFSANL-----SDRKSIKQLAEVAEREMEGIDILVNNAGITRDGLFV 118 (266)
T ss_dssp EEEEE-SCHHHHHHHHHHHCS---SEEEEECCT-----TSHHHHHHHHHHHHHHHTSCCEEEECCCCC-----C
T ss_pred EEEEe-CCHHHHHHHHHHhCC---ceEEEEeec-----CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcc
Confidence 34443 333445555566676 888888874 377888877776544322344777888776555443
No 243
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=52.99 E-value=54 Score=25.71 Aligned_cols=72 Identities=6% Similarity=0.152 Sum_probs=44.5
Q ss_pred CCeEEEeCCCCchH--HHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccC
Q 010125 191 SKLIVYGSDQTHCA--LQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDP 268 (517)
Q Consensus 191 ~~~~v~~s~~~H~s--~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idp 268 (517)
.+.+||....+.+| ..+...-.|+ ....+.++.. -+..++++.+.+.......|.+++ +....|..|+
T Consensus 17 ~~v~vy~~~~Cp~C~~ak~~L~~~~i---~~~~~dvd~~----~~~~~~~~~l~~~~g~~tvP~vfi---~g~~igG~d~ 86 (114)
T 3h8q_A 17 SRVVIFSKSYCPHSTRVKELFSSLGV---ECNVLELDQV----DDGARVQEVLSEITNQKTVPNIFV---NKVHVGGCDQ 86 (114)
T ss_dssp CSEEEEECTTCHHHHHHHHHHHHTTC---CCEEEETTTS----TTHHHHHHHHHHHHSCCSSCEEEE---TTEEEESHHH
T ss_pred CCEEEEEcCCCCcHHHHHHHHHHcCC---CcEEEEecCC----CChHHHHHHHHHHhCCCccCEEEE---CCEEEeCHHH
Confidence 66778877777666 3345556687 7888888642 255677777765554455675443 3345666676
Q ss_pred hhHH
Q 010125 269 LKPL 272 (517)
Q Consensus 269 l~eI 272 (517)
+.++
T Consensus 87 l~~l 90 (114)
T 3h8q_A 87 TFQA 90 (114)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 244
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=51.47 E-value=80 Score=28.51 Aligned_cols=69 Identities=17% Similarity=0.106 Sum_probs=47.3
Q ss_pred CCeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChh
Q 010125 191 SKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLK 270 (517)
Q Consensus 191 ~~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~ 270 (517)
++..++.....-..+...+.++|+ ++.....+ +.++++..+++..++|.. +|+.. .
T Consensus 107 ~kIavVg~~~~~~~~~~i~~ll~~---~i~~~~~~-------~~ee~~~~i~~l~~~G~~--vVVG~--~---------- 162 (225)
T 2pju_A 107 SSIGVVTYQETIPALVAFQKTFNL---RLDQRSYI-------TEEDARGQINELKANGTE--AVVGA--G---------- 162 (225)
T ss_dssp SCEEEEEESSCCHHHHHHHHHHTC---CEEEEEES-------SHHHHHHHHHHHHHTTCC--EEEES--H----------
T ss_pred CcEEEEeCchhhhHHHHHHHHhCC---ceEEEEeC-------CHHHHHHHHHHHHHCCCC--EEECC--H----------
Confidence 344455445556677788899999 88887764 567888889888887743 33332 1
Q ss_pred HHHHHHHHhCCeE
Q 010125 271 PLCDVAKQFGIWV 283 (517)
Q Consensus 271 eI~~i~~~~gi~l 283 (517)
-.+++|+++|+.-
T Consensus 163 ~~~~~A~~~Gl~~ 175 (225)
T 2pju_A 163 LITDLAEEAGMTG 175 (225)
T ss_dssp HHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCcE
Confidence 1278999999864
No 245
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=50.97 E-value=17 Score=33.22 Aligned_cols=74 Identities=9% Similarity=0.150 Sum_probs=52.4
Q ss_pred hHHHHHHHHc-CCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc--cChhHHHHHHHHh
Q 010125 203 CALQKAAQIV-GIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV--DPLKPLCDVAKQF 279 (517)
Q Consensus 203 ~s~~kaa~~~-G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i--dpl~eI~~i~~~~ 279 (517)
.+++.|+.++ .+|...+.+.|.. |.-..++|+..-+...++|. .+. |||-| |++++|.++|.+.
T Consensus 168 V~vetAiaml~dmG~~SvKffPM~----Gl~~leEl~avAkAca~~g~-----~lE----PTGGIdl~Nf~~I~~i~l~a 234 (275)
T 3m6y_A 168 VPIKTAIALVRDMGGNSLKYFPMK----GLAHEEEYRAVAKACAEEGF-----ALE----PTGGIDKENFETIVRIALEA 234 (275)
T ss_dssp EEHHHHHHHHHHHTCCEEEECCCT----TTTTHHHHHHHHHHHHHHTC-----EEE----EBSSCCTTTHHHHHHHHHHT
T ss_pred eeHHHHHHHHHHcCCCeeeEeecC----CcccHHHHHHHHHHHHHcCc-----eEC----CCCCccHhHHHHHHHHHHHc
Confidence 4567766554 4555688899974 35578889888888877772 222 67766 6899999999999
Q ss_pred CCeEEccccc
Q 010125 280 GIWVHVDAAY 289 (517)
Q Consensus 280 gi~lhvDaA~ 289 (517)
|+..++==.|
T Consensus 235 Gv~~viPHIY 244 (275)
T 3m6y_A 235 NVEQVIPHVY 244 (275)
T ss_dssp TCSCBCCEEC
T ss_pred CCCeeccccc
Confidence 9866543334
No 246
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}
Probab=48.71 E-value=85 Score=28.98 Aligned_cols=64 Identities=13% Similarity=0.035 Sum_probs=39.2
Q ss_pred EEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 194 IVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 194 ~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
+++++ .......+.+..+|. ++..+++|- -|.+.+++++++..+....+=+|+.++|....+.+
T Consensus 54 V~~~~-r~~~~~~~~~~~~~~---~~~~~~~Dv-----~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~ 117 (277)
T 4dqx_A 54 VVVAD-VNEDAAVRVANEIGS---KAFGVRVDV-----SSAKDAESMVEKTTAKWGRVDVLVNNAGFGTTGNV 117 (277)
T ss_dssp EEEEE-SSHHHHHHHHHHHCT---TEEEEECCT-----TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCT
T ss_pred EEEEe-CCHHHHHHHHHHhCC---ceEEEEecC-----CCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCc
Confidence 44443 334445555555666 788888873 37788888877654432234477888886655544
No 247
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*
Probab=48.67 E-value=71 Score=28.82 Aligned_cols=64 Identities=22% Similarity=0.081 Sum_probs=38.8
Q ss_pred EEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 195 VYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 195 v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
|++.........+.+..+|. ++..+.+|- -|.+.+++.+++..+.-..+=+++.++|....+.+
T Consensus 33 V~~~~r~~~~~~~~~~~~~~---~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~ 96 (247)
T 3rwb_A 33 VIVSDINAEGAKAAAASIGK---KARAIAADI-----SDPGSVKALFAEIQALTGGIDILVNNASIVPFVAW 96 (247)
T ss_dssp EEEECSCHHHHHHHHHHHCT---TEEECCCCT-----TCHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCG
T ss_pred EEEEeCCHHHHHHHHHHhCC---ceEEEEcCC-----CCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCc
Confidence 43333444445555555666 888888773 37788888777654432234467778877665544
No 248
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Probab=48.51 E-value=33 Score=30.80 Aligned_cols=50 Identities=10% Similarity=0.028 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEE
Q 010125 234 PDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVH 284 (517)
Q Consensus 234 ~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lh 284 (517)
...=|.++.=.+-+|..|..|++..- +..|..-..+++.++|++||+.++
T Consensus 151 ~GhTEAavdLarLAGl~Pa~vicEi~-~~dG~mar~~~l~~fA~~h~l~~i 200 (217)
T 1g57_A 151 GGHTEATIDLMTLAGFKPAGVLCELT-NDDGTMARAPECIEFANKHNMALV 200 (217)
T ss_dssp CSHHHHHHHHHHHTTSCSCEEEEEBB-CTTSSBCCHHHHHHHHHHTTCEEE
T ss_pred CCcHHHHHHHHHHcCCCceEEEEEEe-CCCCCccCHHHHHHHHHHcCCCEE
Confidence 34446666666678999988888765 456888999999999999999875
No 249
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=46.64 E-value=20 Score=34.17 Aligned_cols=57 Identities=18% Similarity=0.064 Sum_probs=41.6
Q ss_pred CcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHh---CCeEEc
Q 010125 229 SYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQF---GIWVHV 285 (517)
Q Consensus 229 ~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~---gi~lhv 285 (517)
++++|.+.+++.++...+.|-.-+++..|.|...+=..+.-.++.+.+.+. ++.+++
T Consensus 30 dg~iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpvia 89 (304)
T 3l21_A 30 DGSLDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIA 89 (304)
T ss_dssp TSCBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEE
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEE
Confidence 579999999999998888886666666666666665666777777777664 456655
No 250
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=46.02 E-value=87 Score=28.92 Aligned_cols=64 Identities=16% Similarity=0.102 Sum_probs=38.6
Q ss_pred EEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 194 IVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 194 ~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
+++++ .......+.+..+|. ++..+.+|- -|.+.+++++++..+....+=+||.++|....+.+
T Consensus 56 V~~~~-r~~~~~~~~~~~~~~---~~~~~~~Dv-----~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~ 119 (277)
T 3gvc_A 56 VLCAD-IDGDAADAAATKIGC---GAAACRVDV-----SDEQQIIAMVDACVAAFGGVDKLVANAGVVHLASL 119 (277)
T ss_dssp EEEEE-SSHHHHHHHHHHHCS---SCEEEECCT-----TCHHHHHHHHHHHHHHHSSCCEEEECCCCCCCBCT
T ss_pred EEEEe-CCHHHHHHHHHHcCC---cceEEEecC-----CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCh
Confidence 44443 333445555555666 788888774 37788888777654432234467777776655544
No 251
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=45.93 E-value=59 Score=28.57 Aligned_cols=68 Identities=12% Similarity=0.220 Sum_probs=42.1
Q ss_pred CeEEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhH
Q 010125 192 KLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKP 271 (517)
Q Consensus 192 ~~~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~e 271 (517)
+..++.....-..+...+.++|+ ++.....+ +.++++..+++..++|.. +|+.. . -
T Consensus 96 kIavvg~~~~~~~~~~~~~ll~~---~i~~~~~~-------~~~e~~~~i~~l~~~G~~--vvVG~--~----------~ 151 (196)
T 2q5c_A 96 ELALIAYKHSIVDKHEIEAMLGV---KIKEFLFS-------SEDEITTLISKVKTENIK--IVVSG--K----------T 151 (196)
T ss_dssp EEEEEEESSCSSCHHHHHHHHTC---EEEEEEEC-------SGGGHHHHHHHHHHTTCC--EEEEC--H----------H
T ss_pred cEEEEeCcchhhHHHHHHHHhCC---ceEEEEeC-------CHHHHHHHHHHHHHCCCe--EEECC--H----------H
Confidence 33344444445567778889999 88877764 344566777777776633 33332 1 1
Q ss_pred HHHHHHHhCCeE
Q 010125 272 LCDVAKQFGIWV 283 (517)
Q Consensus 272 I~~i~~~~gi~l 283 (517)
.+++|+++|+.-
T Consensus 152 ~~~~A~~~Gl~~ 163 (196)
T 2q5c_A 152 VTDEAIKQGLYG 163 (196)
T ss_dssp HHHHHHHTTCEE
T ss_pred HHHHHHHcCCcE
Confidence 267899998763
No 252
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=45.71 E-value=1.1e+02 Score=27.68 Aligned_cols=64 Identities=17% Similarity=0.091 Sum_probs=39.6
Q ss_pred EEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 194 IVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 194 ~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
+++++ .......+.+..++- ++..+.+|- -|.+.+++++++..+....+=+|+.++|....+.+
T Consensus 35 V~~~~-r~~~~~~~~~~~~~~---~~~~~~~D~-----~~~~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~ 98 (259)
T 4e6p_A 35 VAIAD-IDIERARQAAAEIGP---AAYAVQMDV-----TRQDSIDAAIAATVEHAGGLDILVNNAALFDLAPI 98 (259)
T ss_dssp EEEEE-SCHHHHHHHHHHHCT---TEEEEECCT-----TCHHHHHHHHHHHHHHSSSCCEEEECCCCCCCBCG
T ss_pred EEEEe-CCHHHHHHHHHHhCC---CceEEEeeC-----CCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCc
Confidence 44443 344445555556665 788888763 37888888887665443345577778876655543
No 253
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=45.60 E-value=21 Score=34.18 Aligned_cols=57 Identities=12% Similarity=0.024 Sum_probs=44.5
Q ss_pred CcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHh--CCeEEc
Q 010125 229 SYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQF--GIWVHV 285 (517)
Q Consensus 229 ~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~--gi~lhv 285 (517)
++++|.+.+++.++...+.|-.-+++..|.|...+=..+.-.++.+.+.+. .+.+++
T Consensus 23 dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~grvpVia 81 (313)
T 3dz1_A 23 DGKIDDVSIDRLTDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRAKSMQVIV 81 (313)
T ss_dssp TSCBCHHHHHHHHHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHCTTSEEEE
T ss_pred CCCcCHHHHHHHHHHHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 579999999999999888887666777777776666677777888877766 466665
No 254
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=44.52 E-value=40 Score=30.44 Aligned_cols=51 Identities=6% Similarity=-0.056 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEE
Q 010125 233 SPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVH 284 (517)
Q Consensus 233 d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lh 284 (517)
....=|..+.=.+-+|..|..|++..-+ ..|..-..+++.++|++||+.++
T Consensus 161 R~GHTEaaVdLarlAGl~Pa~VicEi~~-ddG~mar~~~l~~fA~~h~l~~i 211 (227)
T 1snn_A 161 RQGHTEMTVALAELANLVPITTICEMMG-DDGNAMSKNETKRYAEKHNLIYL 211 (227)
T ss_dssp CCSHHHHHHHHHHHTTSCSEEEEEEEBC-TTSSBCCHHHHHHHHHHHTCCEE
T ss_pred CCCchHHHHHHHHHcCCCceEEEEEEeC-CCCCcCCHHHHHHHHHHcCCcEE
Confidence 3445566666666789999888888765 55999999999999999999885
No 255
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=44.08 E-value=24 Score=33.36 Aligned_cols=57 Identities=14% Similarity=0.208 Sum_probs=42.0
Q ss_pred CcccCHHHHHHHHHHhHh-cCCcceEEEeeccCCccccccChhHHHHHHHHh---CCeEEc
Q 010125 229 SYGLSPDSLMAQINSDVE-VGLIPLFLCATIGTTAITAVDPLKPLCDVAKQF---GIWVHV 285 (517)
Q Consensus 229 ~~~~d~~~Le~~i~~~~~-~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~---gi~lhv 285 (517)
++++|.+.+++.++...+ .|-.-++++.|.|...+=..+.-.++.+.+.+. .+.+++
T Consensus 18 dg~iD~~~l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpvia 78 (293)
T 1f6k_A 18 DGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIA 78 (293)
T ss_dssp TSCBCHHHHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEE
T ss_pred CCCcCHHHHHHHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEE
Confidence 579999999999998888 786666666776666666667777777777654 355543
No 256
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=44.07 E-value=23 Score=33.69 Aligned_cols=57 Identities=12% Similarity=0.224 Sum_probs=41.6
Q ss_pred CcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHh---CCeEEc
Q 010125 229 SYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQF---GIWVHV 285 (517)
Q Consensus 229 ~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~---gi~lhv 285 (517)
++++|.+.+++.++...+.|-.-++++.|.|...+=..+.-.++.+.+.+. .+.+++
T Consensus 26 dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpVia 85 (303)
T 2wkj_A 26 QQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIA 85 (303)
T ss_dssp TSSBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEE
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 579999999999998888886666666666666655666677777777654 366654
No 257
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=43.48 E-value=20 Score=34.36 Aligned_cols=62 Identities=15% Similarity=0.044 Sum_probs=46.7
Q ss_pred EecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHh---CCeEEc
Q 010125 222 IKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQF---GIWVHV 285 (517)
Q Consensus 222 vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~---gi~lhv 285 (517)
-|.++ ++.+|.+.+++.++...+.|-.-+++..|.|...+=..+.-.++.+.+.+. .+.+++
T Consensus 18 TPf~~--dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpvia 82 (309)
T 3fkr_A 18 TTFAD--TGDLDLASQKRAVDFMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVAGRVPVIV 82 (309)
T ss_dssp CCBCT--TSSBCHHHHHHHHHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEE
T ss_pred CCCCc--CCCcCHHHHHHHHHHHHHcCCCEEEECccccCcccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 35554 579999999999999888887777777777777777777777888887765 355544
No 258
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=43.33 E-value=26 Score=33.42 Aligned_cols=57 Identities=18% Similarity=0.068 Sum_probs=41.1
Q ss_pred CcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHh---CCeEEc
Q 010125 229 SYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQF---GIWVHV 285 (517)
Q Consensus 229 ~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~---gi~lhv 285 (517)
++++|.+.+++.++...+.|-.-++++.|.|...+=..+.-.++.+.+.+. .+.+++
T Consensus 31 dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpvia 90 (304)
T 3cpr_A 31 SGDIDIAAGREVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGDRAKLIA 90 (304)
T ss_dssp TSCBCHHHHHHHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEE
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEe
Confidence 579999999999998888876666666666666665666677777777654 355543
No 259
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=43.16 E-value=1.7e+02 Score=26.04 Aligned_cols=44 Identities=14% Similarity=0.013 Sum_probs=30.8
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
++..+.+|- -|.+.+++.+++..+....+=+|+.++|....+.+
T Consensus 55 ~~~~~~~D~-----~~~~~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~ 98 (247)
T 3lyl_A 55 KARGLVLNI-----SDIESIQNFFAEIKAENLAIDILVNNAGITRDNLM 98 (247)
T ss_dssp CEEEEECCT-----TCHHHHHHHHHHHHHTTCCCSEEEECCCCCCCCCG
T ss_pred ceEEEEecC-----CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCch
Confidence 788888873 37888888887765544445578888876655544
No 260
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=42.60 E-value=84 Score=28.53 Aligned_cols=64 Identities=6% Similarity=0.079 Sum_probs=38.2
Q ss_pred EEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 194 IVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 194 ~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
+++++ .......+....+|. ++..+.+|- -|.+.+++.++...+....+=+++.++|....+.+
T Consensus 35 V~~~~-r~~~~~~~~~~~~~~---~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~ 98 (255)
T 4eso_A 35 VLLTG-RNESNIARIREEFGP---RVHALRSDI-----ADLNEIAVLGAAAGQTLGAIDLLHINAGVSELEPF 98 (255)
T ss_dssp EEEEE-SCHHHHHHHHHHHGG---GEEEEECCT-----TCHHHHHHHHHHHHHHHSSEEEEEECCCCCCCBCG
T ss_pred EEEEe-CCHHHHHHHHHHhCC---cceEEEccC-----CCHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCh
Confidence 44444 334445555555665 788888874 37778877776554332234467777776655543
No 261
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=42.36 E-value=1.7e+02 Score=26.73 Aligned_cols=44 Identities=14% Similarity=0.085 Sum_probs=29.6
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
++..+.+|- -|.+.+++.+++..+....+=+|+.++|....+.+
T Consensus 76 ~~~~~~~Dv-----~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~ 119 (271)
T 4ibo_A 76 DAEAVAFDV-----TSESEIIEAFARLDEQGIDVDILVNNAGIQFRKPM 119 (271)
T ss_dssp CEEECCCCT-----TCHHHHHHHHHHHHHHTCCCCEEEECCCCCCCCCG
T ss_pred ceEEEEcCC-----CCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCc
Confidence 788888763 37888888887665544445577888876555443
No 262
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=41.73 E-value=1.4e+02 Score=27.09 Aligned_cols=45 Identities=22% Similarity=0.118 Sum_probs=29.3
Q ss_pred CCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 217 KNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 217 ~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
.++..+.+|- -|.+.+++.+++..++...+=+|+.++|....+.+
T Consensus 73 ~~~~~~~~Dl-----~~~~~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~ 117 (266)
T 3o38_A 73 GRVEAVVCDV-----TSTEAVDALITQTVEKAGRLDVLVNNAGLGGQTPV 117 (266)
T ss_dssp SCEEEEECCT-----TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCG
T ss_pred CceEEEEeCC-----CCHHHHHHHHHHHHHHhCCCcEEEECCCcCCCCCc
Confidence 3788888874 37788888877654432234477778876555544
No 263
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=41.61 E-value=25 Score=33.55 Aligned_cols=61 Identities=7% Similarity=-0.032 Sum_probs=44.2
Q ss_pred ecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHh---CCeEEc
Q 010125 223 KTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQF---GIWVHV 285 (517)
Q Consensus 223 p~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~---gi~lhv 285 (517)
|.++ ++++|.+.+++.++...+.|-.-+++..|.|...+=..+.-.++.+.+.+. ++.+++
T Consensus 25 Pf~~--dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~gr~pvia 88 (307)
T 3s5o_A 25 PFTA--TAEVDYGKLEENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLA 88 (307)
T ss_dssp CBCT--TSCBCHHHHHHHHHHHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSCTTSEEEE
T ss_pred cCCC--CCCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcCCCCcEEE
Confidence 4443 568999999999988887776666677776766666667777888887775 355554
No 264
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=40.86 E-value=1.2e+02 Score=27.65 Aligned_cols=44 Identities=14% Similarity=-0.004 Sum_probs=28.5
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
++..+.+|- -|.+.+++++++..+....+=++|-++|....+.+
T Consensus 54 ~~~~~~~Dv-----~d~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~ 97 (264)
T 3tfo_A 54 TALAQVLDV-----TDRHSVAAFAQAAVDTWGRIDVLVNNAGVMPLSPL 97 (264)
T ss_dssp EEEEEECCT-----TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCG
T ss_pred cEEEEEcCC-----CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCc
Confidence 778888763 37788888777654432234467788877655544
No 265
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=39.90 E-value=26 Score=33.86 Aligned_cols=57 Identities=7% Similarity=-0.035 Sum_probs=40.6
Q ss_pred CcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHh---CCeEEc
Q 010125 229 SYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQF---GIWVHV 285 (517)
Q Consensus 229 ~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~---gi~lhv 285 (517)
++++|.+.+++.++...+.|-.-++++.|.|...+=..+.-.++.+.+.+. .+.+++
T Consensus 49 dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpVia 108 (332)
T 2r8w_A 49 AGRVDIEAFSALIARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRGRRTLMA 108 (332)
T ss_dssp TCCBCHHHHHHHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEE
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 579999999999998888776666666666666555556667777776654 366655
No 266
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=39.48 E-value=95 Score=27.73 Aligned_cols=64 Identities=17% Similarity=0.176 Sum_probs=35.1
Q ss_pred EEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 194 IVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 194 ~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
+++++. .-....+....++. ++..+.+|- -|.+.+++++++..+....+=+++.++|....+.+
T Consensus 30 V~~~~r-~~~~~~~~~~~~~~---~~~~~~~D~-----~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~ 93 (235)
T 3l6e_A 30 VSMMGR-RYQRLQQQELLLGN---AVIGIVADL-----AHHEDVDVAFAAAVEWGGLPELVLHCAGTGEFGPV 93 (235)
T ss_dssp EEEEES-CHHHHHHHHHHHGG---GEEEEECCT-----TSHHHHHHHHHHHHHHHCSCSEEEEECCCC-----
T ss_pred EEEEEC-CHHHHHHHHHHhcC---CceEEECCC-----CCHHHHHHHHHHHHHhcCCCcEEEECCCCCCCCCh
Confidence 444443 33344555555554 678888774 37788887777654432234467778876655544
No 267
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=39.45 E-value=30 Score=33.82 Aligned_cols=57 Identities=14% Similarity=0.070 Sum_probs=41.4
Q ss_pred CcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHh---CCeEEc
Q 010125 229 SYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQF---GIWVHV 285 (517)
Q Consensus 229 ~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~---gi~lhv 285 (517)
++++|.+.+++.++...++|-.-++++.|.|...+=..+.-.++.+.+.+. .+.+++
T Consensus 74 dg~ID~~al~~lv~~li~~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~grvpVia 133 (360)
T 4dpp_A 74 DGRFDLEAYDDLVNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIG 133 (360)
T ss_dssp TSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEE
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEecccccChhhCCHHHHHHHHHHHHHHhCCCCeEEE
Confidence 579999999999998888886666666666666665666666777766654 366654
No 268
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=39.42 E-value=23 Score=33.67 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=40.4
Q ss_pred CcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHh---CCeEEc
Q 010125 229 SYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQF---GIWVHV 285 (517)
Q Consensus 229 ~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~---gi~lhv 285 (517)
++++|.+.+++.++...+.|-.-+++..|.|...+=..+.-.++.+.+.+. .+.+++
T Consensus 22 dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpvia 81 (297)
T 3flu_A 22 DGSIHYEQLRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIA 81 (297)
T ss_dssp TSCBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEE
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 568999999999988888776656666666666655666667777776654 355554
No 269
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=38.19 E-value=24 Score=33.38 Aligned_cols=51 Identities=12% Similarity=0.060 Sum_probs=38.6
Q ss_pred CcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHh
Q 010125 229 SYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQF 279 (517)
Q Consensus 229 ~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~ 279 (517)
++++|.+.+++.++...+.|-.-++++.|.|...+=..+.-.++.+.+.+.
T Consensus 18 dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~ 68 (294)
T 3b4u_A 18 DGTVDIDAMIAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAA 68 (294)
T ss_dssp TSSBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHH
Confidence 579999999999998888886666666666666655666677777777765
No 270
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E
Probab=37.90 E-value=1.2e+02 Score=27.20 Aligned_cols=64 Identities=14% Similarity=0.093 Sum_probs=37.2
Q ss_pred EEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 194 IVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 194 ~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
+++++ .......+.+..++- ++..+.+|- -|.+++++++++..++...+=+++.++|....+.+
T Consensus 36 V~~~~-r~~~~~~~~~~~~~~---~~~~~~~Dv-----~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~ 99 (248)
T 3op4_A 36 VIGTA-TSESGAQAISDYLGD---NGKGMALNV-----TNPESIEAVLKAITDEFGGVDILVNNAGITRDNLL 99 (248)
T ss_dssp EEEEE-SSHHHHHHHHHHHGG---GEEEEECCT-----TCHHHHHHHHHHHHHHHCCCSEEEECCCCCCCCCG
T ss_pred EEEEe-CCHHHHHHHHHHhcc---cceEEEEeC-----CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCh
Confidence 34443 333444555555555 677777763 37788888877654432234467777776655543
No 271
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=37.85 E-value=21 Score=34.23 Aligned_cols=57 Identities=16% Similarity=0.110 Sum_probs=42.9
Q ss_pred CcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHh---CCeEEc
Q 010125 229 SYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQF---GIWVHV 285 (517)
Q Consensus 229 ~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~---gi~lhv 285 (517)
++++|.+.+++.++...+.|-.-+++..|.|...+=..+.-.++.+.+.+. .+.+++
T Consensus 39 dg~iD~~~l~~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpVia 98 (315)
T 3na8_A 39 DGGLDLPALGRSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIV 98 (315)
T ss_dssp TSSBCHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEE
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 579999999999999888886666666776666666667777788877664 355554
No 272
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=37.81 E-value=1.9e+02 Score=26.04 Aligned_cols=67 Identities=13% Similarity=-0.020 Sum_probs=36.1
Q ss_pred EEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 194 IVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 194 ~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
+++++. .-....+....+.--..++..+.+|- -|.+.+++++++..+....+=+++.++|....+.+
T Consensus 33 V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~ 99 (257)
T 3imf_A 33 VVITGR-TKEKLEEAKLEIEQFPGQILTVQMDV-----RNTDDIQKMIEQIDEKFGRIDILINNAAGNFICPA 99 (257)
T ss_dssp EEEEES-CHHHHHHHHHHHCCSTTCEEEEECCT-----TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCG
T ss_pred EEEEeC-CHHHHHHHHHHHHhcCCcEEEEEccC-----CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCh
Confidence 444443 33334444443322112788888874 37788888777654432234467777775544433
No 273
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=37.64 E-value=23 Score=33.54 Aligned_cols=57 Identities=14% Similarity=0.134 Sum_probs=40.8
Q ss_pred CcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHh---CCeEEc
Q 010125 229 SYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQF---GIWVHV 285 (517)
Q Consensus 229 ~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~---gi~lhv 285 (517)
++++|.+.+++.++...+.|-.-+++..|.|...+=..+.-.++.+.+.+. .+.+++
T Consensus 16 dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvia 75 (291)
T 3tak_A 16 DGGVDWKSLEKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIPIIA 75 (291)
T ss_dssp TSCBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEE
T ss_pred CCCcCHHHHHHHHHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCeEEE
Confidence 579999999999988888776666666666666555666777777777664 355554
No 274
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=37.35 E-value=25 Score=33.39 Aligned_cols=56 Identities=11% Similarity=0.064 Sum_probs=39.1
Q ss_pred CcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHh---CCeEE
Q 010125 229 SYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQF---GIWVH 284 (517)
Q Consensus 229 ~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~---gi~lh 284 (517)
++++|.+.+++.++...+.|-.-++++.|.|...+=..+.-.++.+.+.+. .+.++
T Consensus 27 dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpVi 85 (301)
T 1xky_A 27 NGNIDFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVI 85 (301)
T ss_dssp TSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEE
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCceEE
Confidence 579999999999998888776555666666655555556666777776654 35554
No 275
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=37.16 E-value=24 Score=33.82 Aligned_cols=57 Identities=19% Similarity=0.109 Sum_probs=41.7
Q ss_pred CcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHh---CCeEEc
Q 010125 229 SYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQF---GIWVHV 285 (517)
Q Consensus 229 ~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~---gi~lhv 285 (517)
++++|.+.+++.++...+.|-.-+++..|.|...+=..+.-.++.+.+.+. .+.+++
T Consensus 38 dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpVia 97 (314)
T 3qze_A 38 QGRLDWDSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIPVIA 97 (314)
T ss_dssp TSCBCHHHHHHHHHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEE
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 579999999999998888786666666676666666667777777776654 355554
No 276
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=37.06 E-value=23 Score=33.46 Aligned_cols=56 Identities=20% Similarity=0.136 Sum_probs=39.4
Q ss_pred CcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHh---CCeEE
Q 010125 229 SYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQF---GIWVH 284 (517)
Q Consensus 229 ~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~---gi~lh 284 (517)
++++|.+.+++.++...+.|-.-++++.|.|...+=..+.-.++.+.+.+. .+.++
T Consensus 16 dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi 74 (292)
T 2ojp_A 16 KGNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVI 74 (292)
T ss_dssp TSCBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEE
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCcEE
Confidence 579999999999998887776656666666666555556667777776654 35554
No 277
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=37.01 E-value=1.5e+02 Score=26.69 Aligned_cols=43 Identities=12% Similarity=0.007 Sum_probs=29.4
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
++..+++|- -|.+.++++++...+. ..+=+++.++|....+.+
T Consensus 57 ~~~~~~~Dv-----~~~~~v~~~~~~~~~~-g~id~lv~nAg~~~~~~~ 99 (252)
T 3h7a_A 57 RIVARSLDA-----RNEDEVTAFLNAADAH-APLEVTIFNVGANVNFPI 99 (252)
T ss_dssp EEEEEECCT-----TCHHHHHHHHHHHHHH-SCEEEEEECCCCCCCCCG
T ss_pred eEEEEECcC-----CCHHHHHHHHHHHHhh-CCceEEEECCCcCCCCCc
Confidence 788888874 3788888888766555 344577777876655543
No 278
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=36.84 E-value=22 Score=34.15 Aligned_cols=57 Identities=9% Similarity=0.105 Sum_probs=41.5
Q ss_pred CcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHh---CCeEEc
Q 010125 229 SYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQF---GIWVHV 285 (517)
Q Consensus 229 ~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~---gi~lhv 285 (517)
++++|.+.+++.++...+.|-.-++++.|.|...+=..+.-.++.+.+.+. .+.+++
T Consensus 37 dg~iD~~~l~~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpVia 96 (315)
T 3si9_A 37 NGAIDEKAFCNFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAKRVPVVA 96 (315)
T ss_dssp TSCBCHHHHHHHHHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCBEE
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 579999999999998888886666666666666665666777777777664 355554
No 279
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2
Probab=36.81 E-value=2.3e+02 Score=25.36 Aligned_cols=64 Identities=11% Similarity=-0.032 Sum_probs=36.2
Q ss_pred EEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 194 IVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 194 ~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
+++++. .-....+.+..+|. ++..+.+|- -|.+.++++++...+....+=+|+.++|....+.+
T Consensus 33 V~~~~r-~~~~~~~~~~~~~~---~~~~~~~D~-----~~~~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~ 96 (253)
T 1hxh_A 33 VAFSDI-NEAAGQQLAAELGE---RSMFVRHDV-----SSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDM 96 (253)
T ss_dssp EEEECS-CHHHHHHHHHHHCT---TEEEECCCT-----TCHHHHHHHHHHHHHHHCSCCEEEECCCCCCCBCT
T ss_pred EEEEeC-CHHHHHHHHHHcCC---ceEEEEccC-----CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCc
Confidence 444443 22334444444454 788888763 37788888877654332233467777776554443
No 280
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=35.85 E-value=37 Score=32.99 Aligned_cols=56 Identities=14% Similarity=0.140 Sum_probs=37.6
Q ss_pred CcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEE
Q 010125 229 SYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVH 284 (517)
Q Consensus 229 ~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lh 284 (517)
++++|.+.+++.++...+.|-.-+++..|.|...+=..+.-.++.+.+-.-.+.++
T Consensus 41 dg~ID~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~~~grvpVi 96 (344)
T 2hmc_A 41 DRTPDFDALVRKGKELIADGMSAVVYCGSMGDWPLLTDEQRMEGVERLVKAGIPVI 96 (344)
T ss_dssp TSSBCHHHHHHHHHHHHHTTCCCEEESSGGGTGGGSCHHHHHHHHHHHHHTTCCEE
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEeCccCcChhhCCHHHHHHHHHHHhCCCCcEE
Confidence 57999999999999888887666666666666555555555666665222345544
No 281
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=35.42 E-value=30 Score=33.63 Aligned_cols=61 Identities=18% Similarity=0.129 Sum_probs=41.8
Q ss_pred EecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHh---CCeEE
Q 010125 222 IKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQF---GIWVH 284 (517)
Q Consensus 222 vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~---gi~lh 284 (517)
-|.++ ++++|.+.+++.++...+.|-.-++++.|.|...+=..+.-.++.+.+.+. .+.++
T Consensus 41 TPF~~--dg~ID~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpVi 104 (343)
T 2v9d_A 41 TIFTA--DGQLDKPGTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRRVPVL 104 (343)
T ss_dssp CCBCT--TSSBCHHHHHHHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEE
T ss_pred CCCCC--CCCcCHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEE
Confidence 35543 568999999999988888776666666666666655666667777776654 35554
No 282
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Probab=35.08 E-value=62 Score=29.30 Aligned_cols=51 Identities=14% Similarity=0.079 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhHhcCCcceEEEeeccCCc----------cccccChhHHHHHHHHhCCeEE
Q 010125 234 PDSLMAQINSDVEVGLIPLFLCATIGTTA----------ITAVDPLKPLCDVAKQFGIWVH 284 (517)
Q Consensus 234 ~~~Le~~i~~~~~~g~~p~~vv~t~gtt~----------~G~idpl~eI~~i~~~~gi~lh 284 (517)
...=|.++.=.+-+|..|..|++..-+-. .|..-..+++.++|++||+.++
T Consensus 151 ~GHTEAaVDLarLAGl~PagVicEi~~~~~~~~~~~~~~dG~mar~~~l~~fA~~h~L~ii 211 (233)
T 1k4i_A 151 RGHTEAGVELCRLAGKRPVAVISEIVDDGQEVEGRAVRAAPGMLRGDECVAFARRWGLKVC 211 (233)
T ss_dssp CSHHHHHHHHHHHTTCCSBEEEEEBEECCEECTTSSCEESCEECCHHHHHHHHHHTTCEEE
T ss_pred CChHHHHHHHHHHcCCCceEEEEEeCCCcccccccccCCCCCcCCHHHHHHHHHHcCCcEE
Confidence 33446666666668888988887765431 5888999999999999999885
No 283
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Probab=34.89 E-value=1.6e+02 Score=26.94 Aligned_cols=59 Identities=25% Similarity=0.191 Sum_probs=35.5
Q ss_pred EEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCC
Q 010125 194 IVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTT 261 (517)
Q Consensus 194 ~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt 261 (517)
+++++ ..-....+.+..++. ++..+.+|- -|.+.+++++++..++...+=+||.++|..
T Consensus 55 V~~~~-r~~~~~~~~~~~~~~---~~~~~~~Dv-----~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~ 113 (272)
T 4dyv_A 55 VALAG-RRLDALQETAAEIGD---DALCVPTDV-----TDPDSVRALFTATVEKFGRVDVLFNNAGTG 113 (272)
T ss_dssp EEEEE-SCHHHHHHHHHHHTS---CCEEEECCT-----TSHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred EEEEE-CCHHHHHHHHHHhCC---CeEEEEecC-----CCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 44444 333445555666665 778888773 377888887776544322344677777754
No 284
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}
Probab=34.12 E-value=1.6e+02 Score=26.76 Aligned_cols=64 Identities=13% Similarity=-0.017 Sum_probs=37.6
Q ss_pred EEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 194 IVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 194 ~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
++.++ .......+.....+- ++..+.+|- -|.+.+++++++..+....+=+|+.++|....+.+
T Consensus 32 V~~~~-r~~~~~~~~~~~~~~---~~~~~~~Dv-----~~~~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~ 95 (281)
T 3m1a_A 32 VIGTA-RRTEALDDLVAAYPD---RAEAISLDV-----TDGERIDVVAADVLARYGRVDVLVNNAGRTQVGAF 95 (281)
T ss_dssp EEEEE-SSGGGGHHHHHHCTT---TEEEEECCT-----TCHHHHHHHHHHHHHHHSCCSEEEECCCCEEECCT
T ss_pred EEEEe-CCHHHHHHHHHhccC---CceEEEeeC-----CCHHHHHHHHHHHHHhCCCCCEEEECCCcCCCCCh
Confidence 44443 333344455555555 788888763 37788888777654332234467778876655544
No 285
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=34.07 E-value=1.5e+02 Score=27.27 Aligned_cols=44 Identities=16% Similarity=0.031 Sum_probs=28.9
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
++..+.+|- -|.+.+++++++..+....+=+|+.++|....+.+
T Consensus 74 ~~~~~~~Dv-----~d~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~ 117 (279)
T 3sju_A 74 DVDGSSCDV-----TSTDEVHAAVAAAVERFGPIGILVNSAGRNGGGET 117 (279)
T ss_dssp CEEEEECCT-----TCHHHHHHHHHHHHHHHCSCCEEEECCCCCCCSCG
T ss_pred cEEEEECCC-----CCHHHHHHHHHHHHHHcCCCcEEEECCCCCCCCCh
Confidence 788888773 37888888877654432234467778876655544
No 286
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=34.07 E-value=26 Score=33.13 Aligned_cols=51 Identities=12% Similarity=0.114 Sum_probs=38.0
Q ss_pred CcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHh
Q 010125 229 SYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQF 279 (517)
Q Consensus 229 ~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~ 279 (517)
++++|.+.+++.++...+.|-.-+++..|.|...+=..+.-.++.+.+.+.
T Consensus 14 dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~eEr~~v~~~~~~~ 64 (293)
T 1w3i_A 14 DNRIDKEKLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDV 64 (293)
T ss_dssp TSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHH
Confidence 579999999999998888886555666666665555556677777777765
No 287
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=34.05 E-value=1.4e+02 Score=29.44 Aligned_cols=81 Identities=17% Similarity=0.096 Sum_probs=52.2
Q ss_pred chHHHHHHHHcCCCCCCEEEEecCCCCCcc-cCHHHHHHHHHHhHhcCCcceEEEeeccCCcc-c---cccChhHHHHHH
Q 010125 202 HCALQKAAQIVGIDVKNFRAIKTTKSSSYG-LSPDSLMAQINSDVEVGLIPLFLCATIGTTAI-T---AVDPLKPLCDVA 276 (517)
Q Consensus 202 H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~-~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~-G---~idpl~eI~~i~ 276 (517)
+..+.+++.-.|. .+.+.. |. .++++++.+++.-.+.|...++++ -.|++.. . ..-++..|..+.
T Consensus 238 n~~LL~~~a~~gk----PVilk~-----G~~~t~~e~~~Ave~i~~~Gn~~i~L~-~rG~s~yp~~~~~~ldl~~i~~lk 307 (385)
T 3nvt_A 238 NFELLKAAGRVDK----PILLKR-----GLSATIEEFIGAAEYIMSQGNGKIILC-ERGIRTYEKATRNTLDISAVPILK 307 (385)
T ss_dssp CHHHHHHHHTSSS----CEEEEC-----CTTCCHHHHHHHHHHHHTTTCCCEEEE-ECCBCCSCCSSSSBCCTTHHHHHH
T ss_pred CHHHHHHHHccCC----cEEEec-----CCCCCHHHHHHHHHHHHHcCCCeEEEE-ECCCCCCCCCCccccCHHHHHHHH
Confidence 3444454444443 444542 34 799999999988777776554443 3333221 1 123788888888
Q ss_pred HHhCCeEEcccccccc
Q 010125 277 KQFGIWVHVDAAYAGS 292 (517)
Q Consensus 277 ~~~gi~lhvDaA~g~~ 292 (517)
+..++.+++|.+|+++
T Consensus 308 ~~~~lpV~~D~th~~G 323 (385)
T 3nvt_A 308 KETHLPVMVDVTHSTG 323 (385)
T ss_dssp HHBSSCEEEEHHHHHC
T ss_pred HhcCCCEEEcCCCCCC
Confidence 8899999999999764
No 288
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=34.03 E-value=23 Score=33.84 Aligned_cols=57 Identities=12% Similarity=0.053 Sum_probs=41.2
Q ss_pred CcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHh---CCeEEc
Q 010125 229 SYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQF---GIWVHV 285 (517)
Q Consensus 229 ~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~---gi~lhv 285 (517)
++++|.+.+++.++...+.|-.-+++..|.|...+=..+.-.++.+.+.+. .+.+++
T Consensus 22 dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpVia 81 (311)
T 3h5d_A 22 DGSINFDAIPALIEHLLAHHTDGILLAGTTAESPTLTHDEELELFAAVQKVVNGRVPLIA 81 (311)
T ss_dssp TSSBCTTHHHHHHHHHHHTTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHHSCSSSCEEE
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 568999999999888888776666666676666666667777777777765 345544
No 289
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=33.56 E-value=22 Score=33.61 Aligned_cols=51 Identities=16% Similarity=0.177 Sum_probs=37.3
Q ss_pred CcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHh
Q 010125 229 SYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQF 279 (517)
Q Consensus 229 ~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~ 279 (517)
++++|.+.+++.++...+.|-.-++++.|.|...+=..+.-.++.+.+.+.
T Consensus 14 dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~ 64 (288)
T 2nuw_A 14 QGKVNVDALKTHAKNLLEKGIDAIFVNGTTGLGPALSKDEKRQNLNALYDV 64 (288)
T ss_dssp TSCBCHHHHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHTTT
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHH
Confidence 579999999999998888886655666666655555556666777776654
No 290
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=33.13 E-value=16 Score=36.93 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=27.8
Q ss_pred cCCccccccChhHHHHHHHHhCCeEEccccc
Q 010125 259 GTTAITAVDPLKPLCDVAKQFGIWVHVDAAY 289 (517)
Q Consensus 259 gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~ 289 (517)
.++..|..++++++++-||++||.+++|.++
T Consensus 69 i~~~~Gt~~df~~lv~~aH~~Gi~VilD~V~ 99 (496)
T 4gqr_A 69 LCTRSGNEDEFRNMVTRCNNVGVRIYVDAVI 99 (496)
T ss_dssp SCBTTBCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred eCCCCCCHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 3567899999999999999999999999864
No 291
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*
Probab=33.00 E-value=2.3e+02 Score=25.54 Aligned_cols=44 Identities=9% Similarity=-0.017 Sum_probs=28.7
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
++..+.+|- -|.+.+++++++..+....+=+|+.++|....+.+
T Consensus 55 ~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~ 98 (258)
T 3oid_A 55 KVLVVKANV-----GQPAKIKEMFQQIDETFGRLDVFVNNAASGVLRPV 98 (258)
T ss_dssp CEEEEECCT-----TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCSCG
T ss_pred cEEEEEcCC-----CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCh
Confidence 788888873 37888888887654432234467778876554433
No 292
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=32.98 E-value=33 Score=32.34 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=36.2
Q ss_pred CcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHh
Q 010125 229 SYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQF 279 (517)
Q Consensus 229 ~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~ 279 (517)
++ +|.+.+++.++...+.|-.-++++.|.|...+=..+.-.++.+.+.+.
T Consensus 17 dg-iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~ 66 (291)
T 3a5f_A 17 TG-VDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDK 66 (291)
T ss_dssp SS-BCHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHH
T ss_pred CC-cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHH
Confidence 57 999999999988888776666666666666655566667777776654
No 293
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=32.89 E-value=1.1e+02 Score=28.32 Aligned_cols=85 Identities=15% Similarity=0.005 Sum_probs=51.8
Q ss_pred CCchHHHHHHHHcCCCCCCEEEEecCCCCCcc-cCHHHHHHHHHHhHhcCCcceEEEeeccCC---ccccccChhHHHHH
Q 010125 200 QTHCALQKAAQIVGIDVKNFRAIKTTKSSSYG-LSPDSLMAQINSDVEVGLIPLFLCATIGTT---AITAVDPLKPLCDV 275 (517)
Q Consensus 200 ~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~-~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt---~~G~idpl~eI~~i 275 (517)
..+....+.+.-+|. .+.+.. |. .+++++..+++.-...|...+.++--.+++ ..=..-+|..|..+
T Consensus 117 ~~n~~ll~~~a~~~k----PV~lk~-----G~~~t~~e~~~Av~~i~~~Gn~~i~L~~RG~~~~~~y~~~~v~L~ai~~l 187 (262)
T 1zco_A 117 SQNFELLKEVGKVEN----PVLLKR-----GMGNTIQELLYSAEYIMAQGNENVILCERGIRTFETATRFTLDISAVPVV 187 (262)
T ss_dssp TTCHHHHHHHTTSSS----CEEEEC-----CTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHH
T ss_pred ccCHHHHHHHHhcCC----cEEEec-----CCCCCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCcChhhcCHHHHHHH
Confidence 344444444333554 455543 33 389999999987776675554444421111 11122357788888
Q ss_pred HHHhCCeEEccccccccc
Q 010125 276 AKQFGIWVHVDAAYAGSA 293 (517)
Q Consensus 276 ~~~~gi~lhvDaA~g~~~ 293 (517)
.+.+++.+|+|..|+.+.
T Consensus 188 k~~~~~pVi~d~sH~~g~ 205 (262)
T 1zco_A 188 KELSHLPIIVDPSHPAGR 205 (262)
T ss_dssp HHHBSSCEEECSSTTTCS
T ss_pred HhhhCCCEEEEcCCCCCc
Confidence 887799999999998664
No 294
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=32.67 E-value=2.4e+02 Score=26.10 Aligned_cols=68 Identities=13% Similarity=0.133 Sum_probs=37.8
Q ss_pred EEEeCCCCchHHHHHHHHc-CCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcccccc
Q 010125 194 IVYGSDQTHCALQKAAQIV-GIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVD 267 (517)
Q Consensus 194 ~v~~s~~~H~s~~kaa~~~-G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~id 267 (517)
+++++.. -....+.+..+ ..|..++..+.+|- -|.+.+++++++..++-..+=+||.++|....+.+.
T Consensus 68 V~~~~r~-~~~~~~~~~~l~~~~~~~~~~~~~Dv-----~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~ 136 (293)
T 3rih_A 68 VAVAARS-PRELSSVTAELGELGAGNVIGVRLDV-----SDPGSCADAARTVVDAFGALDVVCANAGIFPEARLD 136 (293)
T ss_dssp EEEEESS-GGGGHHHHHHHTTSSSSCEEEEECCT-----TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCTT
T ss_pred EEEEECC-HHHHHHHHHHHHhhCCCcEEEEEEeC-----CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcc
Confidence 4444433 23334433333 33323788888873 377888887776544322344677778776655543
No 295
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=32.39 E-value=1.4e+02 Score=27.30 Aligned_cols=59 Identities=15% Similarity=0.098 Sum_probs=34.3
Q ss_pred EEEeCCCCchHHHHHHH---HcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCC
Q 010125 194 IVYGSDQTHCALQKAAQ---IVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTT 261 (517)
Q Consensus 194 ~v~~s~~~H~s~~kaa~---~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt 261 (517)
+++++ ..--...+.++ -.|. ++..+.+|- -|.+++++.+++..++-.++=++|-++|..
T Consensus 34 Vv~~~-~~~~~~~~~~~~i~~~g~---~~~~~~~Dv-----t~~~~v~~~~~~~~~~~G~iDiLVNNAGi~ 95 (254)
T 4fn4_A 34 VVAVE-LLEDRLNQIVQELRGMGK---EVLGVKADV-----SKKKDVEEFVRRTFETYSRIDVLCNNAGIM 95 (254)
T ss_dssp EEEEE-SCHHHHHHHHHHHHHTTC---CEEEEECCT-----TSHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred EEEEE-CCHHHHHHHHHHHHhcCC---cEEEEEccC-----CCHHHHHHHHHHHHHHcCCCCEEEECCccc
Confidence 44444 33333444333 3455 888888874 378888888876654422333677777743
No 296
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=32.28 E-value=1.8e+02 Score=27.04 Aligned_cols=44 Identities=5% Similarity=-0.033 Sum_probs=28.9
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
++..+.+|- -|.+.+++++++..+....+=+|+.++|....+.+
T Consensus 81 ~~~~~~~Dv-----~d~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~ 124 (301)
T 3tjr_A 81 DAHGVVCDV-----RHLDEMVRLADEAFRLLGGVDVVFSNAGIVVAGPL 124 (301)
T ss_dssp CEEEEECCT-----TCHHHHHHHHHHHHHHHSSCSEEEECCCCCCCBCG
T ss_pred ceEEEEccC-----CCHHHHHHHHHHHHHhCCCCCEEEECCCcCCCCCc
Confidence 788888874 37788888877654432234477788876655544
No 297
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=32.12 E-value=28 Score=33.37 Aligned_cols=57 Identities=9% Similarity=0.062 Sum_probs=38.4
Q ss_pred CcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHh---CCeEEc
Q 010125 229 SYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQF---GIWVHV 285 (517)
Q Consensus 229 ~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~---gi~lhv 285 (517)
++++|.+.+++.++...+.|..-++++.|.|...+=..+.-.++.+.+.+. .+.+++
T Consensus 27 dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpVia 86 (314)
T 3d0c_A 27 TREIDWKGLDDNVEFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVNGRATVVA 86 (314)
T ss_dssp TCCBCHHHHHHHHHHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEE
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEECcccCChhhCCHHHHHHHHHHHHHHhCCCCeEEe
Confidence 579999999999998888775555555555555555556666777766653 356654
No 298
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}
Probab=31.89 E-value=2.8e+02 Score=24.75 Aligned_cols=60 Identities=12% Similarity=0.045 Sum_probs=36.3
Q ss_pred EEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCc
Q 010125 194 IVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTA 262 (517)
Q Consensus 194 ~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~ 262 (517)
+++++ .......+.+..++. ++..+.+|- -|.+.+++++++..+....+=+|+.++|...
T Consensus 36 V~~~~-r~~~~~~~~~~~~~~---~~~~~~~D~-----~~~~~~~~~~~~~~~~~g~id~li~~Ag~~~ 95 (261)
T 3n74_A 36 VVIVD-RDKAGAERVAGEIGD---AALAVAADI-----SKEADVDAAVEAALSKFGKVDILVNNAGIGH 95 (261)
T ss_dssp EEEEE-SCHHHHHHHHHHHCT---TEEEEECCT-----TSHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred EEEEc-CCHHHHHHHHHHhCC---ceEEEEecC-----CCHHHHHHHHHHHHHhcCCCCEEEECCccCC
Confidence 44444 334445555666666 788888874 3677888777765443223446777777543
No 299
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=31.51 E-value=31 Score=30.42 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhC--CeEEccccccc
Q 010125 233 SPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFG--IWVHVDAAYAG 291 (517)
Q Consensus 233 d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~g--i~lhvDaA~g~ 291 (517)
+.+.|+++++...+ .|++. .|.+..++++.+.++++| +.+|+|-..|.
T Consensus 18 ~~~~l~~al~s~~~------~ifll-----~g~i~~l~~~v~~lk~~~K~v~Vh~Dli~Gl 67 (192)
T 3kts_A 18 NQKDMEKILELDLT------YMVML-----ETHVAQLKALVKYAQAGGKKVLLHADLVNGL 67 (192)
T ss_dssp SSHHHHHHTTSSCC------EEEEC-----SEETTTHHHHHHHHHHTTCEEEEEGGGEETC
T ss_pred CHHHHHHHHcCCCC------EEEEe-----cCcHHHHHHHHHHHHHcCCeEEEecCchhcc
Confidence 67889998875532 33332 467789999999999998 57788865543
No 300
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=31.40 E-value=33 Score=32.58 Aligned_cols=57 Identities=16% Similarity=0.174 Sum_probs=40.9
Q ss_pred CcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHh----CCeEEc
Q 010125 229 SYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQF----GIWVHV 285 (517)
Q Consensus 229 ~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~----gi~lhv 285 (517)
++++|.+.+++.++...+.|-.-+++..|.|...+=..+.-.++.+.+.+. .+.+++
T Consensus 22 dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpvia 82 (301)
T 3m5v_A 22 NGKVDEQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLA 82 (301)
T ss_dssp TTEECHHHHHHHHHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 569999999999998888886656666666665555566667777777664 466665
No 301
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}
Probab=31.30 E-value=2.6e+02 Score=25.64 Aligned_cols=62 Identities=10% Similarity=-0.095 Sum_probs=34.3
Q ss_pred EEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCC
Q 010125 194 IVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTT 261 (517)
Q Consensus 194 ~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt 261 (517)
+++++ ..-....+.+..+.-...++..+.+|- -|.+.+++++++..+....+=++|.++|..
T Consensus 55 V~~~~-r~~~~~~~~~~~l~~~~~~~~~~~~Dv-----~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~ 116 (283)
T 3v8b_A 55 VGALG-RTRTEVEEVADEIVGAGGQAIALEADV-----SDELQMRNAVRDLVLKFGHLDIVVANAGIN 116 (283)
T ss_dssp EEEEE-SSHHHHHHHHHHHTTTTCCEEEEECCT-----TCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred EEEEe-CCHHHHHHHHHHHHhcCCcEEEEEccC-----CCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 44444 333344444443321112788888873 377888888876544322344677777754
No 302
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=31.14 E-value=23 Score=33.74 Aligned_cols=57 Identities=11% Similarity=0.040 Sum_probs=41.4
Q ss_pred CcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHh---CCeEEc
Q 010125 229 SYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQF---GIWVHV 285 (517)
Q Consensus 229 ~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~---gi~lhv 285 (517)
++++|.+.+++.++...+.|-.-+++..|.|...+=..+.-.++.+.+.+. .+.+++
T Consensus 19 dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpvia 78 (300)
T 3eb2_A 19 EGRVRADVMGRLCDDLIQAGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQRRVPVVA 78 (300)
T ss_dssp TSCBCHHHHHHHHHHHHHTTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCBEE
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccccCccccCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 579999999999998888886666666666666655666777777777664 355544
No 303
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=30.95 E-value=28 Score=33.46 Aligned_cols=57 Identities=14% Similarity=0.035 Sum_probs=41.6
Q ss_pred CcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHh---CCeEEc
Q 010125 229 SYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQF---GIWVHV 285 (517)
Q Consensus 229 ~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~---gi~lhv 285 (517)
++.+|.+.+++.++...+.|-.-++++.|.|...+=..+.-.++.+.+.+. .+.+++
T Consensus 26 dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpvia 85 (318)
T 3qfe_A 26 TDTLDLASQERYYAYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVGPDFPIMA 85 (318)
T ss_dssp TTEECHHHHHHHHHHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHCTTSCEEE
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 568999999999988887776666677777766666667777777777664 355554
No 304
>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*
Probab=30.50 E-value=1.5e+02 Score=23.73 Aligned_cols=72 Identities=11% Similarity=0.070 Sum_probs=39.7
Q ss_pred CCeEEEeCCCCchHHH---HHHHHcC---CCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccc
Q 010125 191 SKLIVYGSDQTHCALQ---KAAQIVG---IDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAIT 264 (517)
Q Consensus 191 ~~~~v~~s~~~H~s~~---kaa~~~G---~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G 264 (517)
.+.+||....+.++.. ......| + .+..++++.+. +-.++.+.+.+.......|.++ ..|. ..|
T Consensus 37 ~~Vvvy~~~~Cp~C~~a~k~~L~~~~~~~i---~~~~vdvd~~~----~~~~~~~~L~~~~g~~tVP~vf--i~g~-~ig 106 (129)
T 3ctg_A 37 KEVFVAAKTYCPYCKATLSTLFQELNVPKS---KALVLELDEMS----NGSEIQDALEEISGQKTVPNVY--INGK-HIG 106 (129)
T ss_dssp SSEEEEECTTCHHHHHHHHHHHTTSCCCGG---GEEEEEGGGST----THHHHHHHHHHHHSCCSSCEEE--ETTE-EEE
T ss_pred CCEEEEECCCCCchHHHHHHHHHhcCccCC---CcEEEEccccC----CHHHHHHHHHHHhCCCCCCEEE--ECCE-EEc
Confidence 5677888777776642 2333445 5 77888876422 3345555565544444567532 2333 456
Q ss_pred cccChhHH
Q 010125 265 AVDPLKPL 272 (517)
Q Consensus 265 ~idpl~eI 272 (517)
-.|++.++
T Consensus 107 G~d~l~~l 114 (129)
T 3ctg_A 107 GNSDLETL 114 (129)
T ss_dssp SHHHHHHH
T ss_pred CHHHHHHH
Confidence 56665544
No 305
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=29.37 E-value=3.1e+02 Score=24.59 Aligned_cols=63 Identities=5% Similarity=-0.029 Sum_probs=32.8
Q ss_pred EEEeCCCCchHHHHHHHHc-CCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCc
Q 010125 194 IVYGSDQTHCALQKAAQIV-GIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTA 262 (517)
Q Consensus 194 ~v~~s~~~H~s~~kaa~~~-G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~ 262 (517)
+++++.. -....+..+.+ ..+..++..+++|- -|.+++++.+++..++-..+=+++.++|...
T Consensus 35 Vvi~~r~-~~~~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~G~iD~lvnnAg~~~ 98 (256)
T 4fs3_A 35 LVFTYRK-ERSRKELEKLLEQLNQPEAHLYQIDV-----QSDEEVINGFEQIGKDVGNIDGVYHSIAFAN 98 (256)
T ss_dssp EEEEESS-GGGHHHHHHHHGGGTCSSCEEEECCT-----TCHHHHHHHHHHHHHHHCCCSEEEECCCCCC
T ss_pred EEEEECC-HHHHHHHHHHHHhcCCCcEEEEEccC-----CCHHHHHHHHHHHHHHhCCCCEEEecccccc
Confidence 4555433 33334433332 22333778888774 3677888777765443222335666666443
No 306
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=29.36 E-value=32 Score=32.95 Aligned_cols=51 Identities=8% Similarity=0.110 Sum_probs=27.9
Q ss_pred CcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHh
Q 010125 229 SYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQF 279 (517)
Q Consensus 229 ~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~ 279 (517)
++++|.+.+++.++...+.|-.-+++..|.|...+=..+.-.++.+.+.+.
T Consensus 27 dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~ 77 (316)
T 3e96_A 27 DGSIDWHHYKETVDRIVDNGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEY 77 (316)
T ss_dssp TCCBCHHHHHHHHHHHHTTTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHH
Confidence 356777777777766666664444444444444444445555555555443
No 307
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Probab=29.31 E-value=3e+02 Score=24.54 Aligned_cols=43 Identities=7% Similarity=-0.082 Sum_probs=26.2
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcccc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITA 265 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~ 265 (517)
++..+++|- -|.+.+++++++..+....+=+|+.++|....+.
T Consensus 56 ~~~~~~~D~-----~~~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~ 98 (260)
T 1x1t_A 56 KVLYDGADL-----SKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTAL 98 (260)
T ss_dssp CEEEECCCT-----TSHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCC
T ss_pred cEEEEECCC-----CCHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCC
Confidence 778887763 3778888877654332222336777777554443
No 308
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=28.82 E-value=44 Score=30.60 Aligned_cols=36 Identities=33% Similarity=0.396 Sum_probs=28.1
Q ss_pred cceEEEeeccCCccccccChhHHHHHHHHhCCeEEccc
Q 010125 250 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDA 287 (517)
Q Consensus 250 ~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lhvDa 287 (517)
...+|++|-|.+..|. ||+ +.+++++++|+.+|+=|
T Consensus 10 ~k~iillTDG~~~~g~-~p~-~aa~~a~~~gi~v~tIG 45 (242)
T 3rag_A 10 IRQILVITDGCSNIGP-DPV-EAARRAHRHGIVVNVIG 45 (242)
T ss_dssp EEEEEEEESSCCCSSS-CHH-HHHHHHHHTTCEEEEEE
T ss_pred ccEEEEEccCCCCCCC-CHH-HHHHHHHHCCCEEEEEE
Confidence 3468999999888886 776 55689999999987643
No 309
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Probab=28.80 E-value=2.6e+02 Score=24.80 Aligned_cols=44 Identities=16% Similarity=0.077 Sum_probs=27.5
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
++..+.+|- -|.+.+++++++..+....+=+|+.++|....+.+
T Consensus 57 ~~~~~~~Dv-----~~~~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~ 100 (247)
T 2jah_A 57 KVHVLELDV-----ADRQGVDAAVASTVEALGGLDILVNNAGIMLLGPV 100 (247)
T ss_dssp CEEEEECCT-----TCHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCS
T ss_pred cEEEEECCC-----CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCch
Confidence 788888763 37788888877544322223367777776555544
No 310
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}
Probab=28.54 E-value=1.4e+02 Score=26.79 Aligned_cols=52 Identities=13% Similarity=-0.063 Sum_probs=26.0
Q ss_pred HHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccc
Q 010125 205 LQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAIT 264 (517)
Q Consensus 205 ~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G 264 (517)
..+.+..++. ++..+.+|- -|.+.+++++++..++...+=+++.++|....+
T Consensus 44 ~~~~~~~~~~---~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~ 95 (257)
T 3tpc_A 44 GEEPAAELGA---AVRFRNADV-----TNEADATAALAFAKQEFGHVHGLVNCAGTAPGE 95 (257)
T ss_dssp --------------CEEEECCT-----TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCC
T ss_pred HHHHHHHhCC---ceEEEEccC-----CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCC
Confidence 3444444454 777888763 377888888776544322344677777765443
No 311
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*
Probab=28.51 E-value=2e+02 Score=26.25 Aligned_cols=44 Identities=9% Similarity=0.030 Sum_probs=27.9
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
++..+.+|- -|.+.+++++++..++...+=+||.++|....+.+
T Consensus 78 ~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~ 121 (277)
T 4fc7_A 78 RCLPLSMDV-----RAPPAVMAAVDQALKEFGRIDILINCAAGNFLCPA 121 (277)
T ss_dssp CEEEEECCT-----TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCG
T ss_pred cEEEEEcCC-----CCHHHHHHHHHHHHHHcCCCCEEEECCcCCCCCCc
Confidence 788888874 37788888777654432234467777775544433
No 312
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=28.34 E-value=22 Score=35.83 Aligned_cols=30 Identities=10% Similarity=0.058 Sum_probs=26.8
Q ss_pred CCccccccChhHHHHHHHHhCCeEEccccc
Q 010125 260 TTAITAVDPLKPLCDVAKQFGIWVHVDAAY 289 (517)
Q Consensus 260 tt~~G~idpl~eI~~i~~~~gi~lhvDaA~ 289 (517)
....|..++++++++-||++|+.+++|.++
T Consensus 58 dp~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~ 87 (448)
T 1g94_A 58 QSRGGNRAQFIDMVNRCSAAGVDIYVDTLI 87 (448)
T ss_dssp CBTTBCHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEEee
Confidence 456788999999999999999999999865
No 313
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=28.18 E-value=1.4e+02 Score=26.49 Aligned_cols=86 Identities=14% Similarity=0.094 Sum_probs=50.7
Q ss_pred HHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEe--eccCCccccccChhHHHHHHHHhCC-
Q 010125 205 LQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCA--TIGTTAITAVDPLKPLCDVAKQFGI- 281 (517)
Q Consensus 205 ~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~--t~gtt~~G~idpl~eI~~i~~~~gi- 281 (517)
+....+..|. +|+.+.. .+.++.+.+++.+.. |-+|.+ ++-. +...+.+.++.+.+++.|.
T Consensus 112 v~~~l~~~G~---~Vi~LG~------~vp~e~iv~~~~~~~-----~d~v~l~~S~l~--~~~~~~~~~~i~~l~~~~~~ 175 (215)
T 3ezx_A 112 VTTMLGANGF---QIVDLGV------DVLNENVVEEAAKHK-----GEKVLLVGSALM--TTSMLGQKDLMDRLNEEKLR 175 (215)
T ss_dssp HHHHHHHTSC---EEEECCS------SCCHHHHHHHHHHTT-----TSCEEEEEECSS--HHHHTHHHHHHHHHHHTTCG
T ss_pred HHHHHHHCCC---eEEEcCC------CCCHHHHHHHHHHcC-----CCEEEEEchhcc--cCcHHHHHHHHHHHHHcCCC
Confidence 3345566688 7777754 357888877776543 224555 4333 3456678999999998864
Q ss_pred ---eEEcccccccccccCccccccccCCCCCCeeeec
Q 010125 282 ---WVHVDAAYAGSACICPEFRHFIDGVEGADSFSLN 315 (517)
Q Consensus 282 ---~lhvDaA~g~~~~~~~~~~~~~~g~~~aDsi~~~ 315 (517)
.+.+ |+..+.+++...+ ++|.++-|
T Consensus 176 ~~v~v~v-----GG~~~~~~~a~~i----Gad~~~~d 203 (215)
T 3ezx_A 176 DSVKCMF-----GGAPVSDKWIEEI----GADATAEN 203 (215)
T ss_dssp GGSEEEE-----ESSSCCHHHHHHH----TCCBCCSS
T ss_pred CCCEEEE-----ECCCCCHHHHHHh----CCeEEECC
Confidence 4544 3343444443222 56666544
No 314
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2
Probab=27.86 E-value=2.3e+02 Score=25.61 Aligned_cols=63 Identities=13% Similarity=-0.014 Sum_probs=35.7
Q ss_pred EEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcccc
Q 010125 194 IVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITA 265 (517)
Q Consensus 194 ~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~ 265 (517)
+++++. ......+.+..++. ++..+++|- -|.+++++++++..+....+=+|+-++|....+.
T Consensus 33 V~~~~r-~~~~~~~~~~~~~~---~~~~~~~D~-----~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~ 95 (263)
T 2a4k_A 33 LVAVDR-EERLLAEAVAALEA---EAIAVVADV-----SDPKAVEAVFAEALEEFGRLHGVAHFAGVAHSAL 95 (263)
T ss_dssp EEEEES-CHHHHHHHHHTCCS---SEEEEECCT-----TSHHHHHHHHHHHHHHHSCCCEEEEGGGGTTTTC
T ss_pred EEEEeC-CHHHHHHHHHHhcC---ceEEEEcCC-----CCHHHHHHHHHHHHHHcCCCcEEEECCCCCCCCC
Confidence 444442 33334444454553 778888764 3778888887765433223346777777655443
No 315
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=27.78 E-value=3e+02 Score=24.96 Aligned_cols=48 Identities=15% Similarity=0.006 Sum_probs=29.9
Q ss_pred HcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 211 IVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 211 ~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
..|. ++..+.+|- -|.+.+++.+++..++-..+=+||.++|....+.+
T Consensus 74 ~~~~---~~~~~~~Dv-----~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~ 121 (270)
T 3ftp_A 74 QAGL---EGRGAVLNV-----NDATAVDALVESTLKEFGALNVLVNNAGITQDQLA 121 (270)
T ss_dssp HHTC---CCEEEECCT-----TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCT
T ss_pred hcCC---cEEEEEEeC-----CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCc
Confidence 3455 677777763 37788888777654432234467778876655544
No 316
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=27.75 E-value=3.4e+02 Score=24.49 Aligned_cols=102 Identities=16% Similarity=0.032 Sum_probs=54.1
Q ss_pred ceEEcCCchHHHHHHHHHHHHHHHHHhcccCCCCeEEEeC---------CCCchHHHHHHHHcCCCCCCEEEEecCCCCC
Q 010125 159 GGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGS---------DQTHCALQKAAQIVGIDVKNFRAIKTTKSSS 229 (517)
Q Consensus 159 ~g~~t~ggt~a~~~al~~ar~~~~~~~g~~~~~~~~v~~s---------~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~ 229 (517)
.++..|||..+.+.+..+. +. |.+- -......+ ...+....+.|+.+|+ .+..+++...
T Consensus 7 vvvl~SGGkDSs~al~~l~-~~-----G~eV-~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGI---pl~~v~~~g~-- 74 (237)
T 3rjz_A 7 VAVLYSGGKDSNYALYWAI-KN-----RFSV-KFLVTMVSENEESYMYHTINANLTDLQARALGI---PLVKGFTQGE-- 74 (237)
T ss_dssp EEEECCSSHHHHHHHHHHH-HT-----TCEE-EEEEEEECC--------CCSSSHHHHHHHHHTC---CEEEEEC-----
T ss_pred EEEEecCcHHHHHHHHHHH-Hc-----CCeE-EEEEEEcCCCCCccccCCccHHHHHHHHHHcCC---CEEEEECCCC--
Confidence 4688899998886554432 21 2210 00001111 1223457788999999 8888887532
Q ss_pred cccCHHHHHHHHHHhHhcCCcceEEEeeccCCcccccc---ChhHHHHHHHHhCCeEE
Q 010125 230 YGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVD---PLKPLCDVAKQFGIWVH 284 (517)
Q Consensus 230 ~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~id---pl~eI~~i~~~~gi~lh 284 (517)
...-.++|.+++++. |. -.| .+|+++ --..+-.+|.+.|+...
T Consensus 75 ~~~e~e~l~~~l~~~---~i--~~v-------v~Gdi~s~yqr~r~e~vc~~~gl~~~ 120 (237)
T 3rjz_A 75 KEKEVEDLKRVLSGL---KI--QGI-------VAGALASKYQRKRIEKVAKELGLEVY 120 (237)
T ss_dssp ---CHHHHHHHHTTS---CC--SEE-------ECC---CCSHHHHHHHHHHHTTCEEE
T ss_pred chHHHHHHHHHHHhc---CC--cEE-------EECCcchHHHHHHHHHHHHHcCCEEE
Confidence 123467777777542 10 012 256663 23567778999887763
No 317
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=27.70 E-value=1.9e+02 Score=26.25 Aligned_cols=46 Identities=11% Similarity=-0.044 Sum_probs=30.6
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccC
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDP 268 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idp 268 (517)
++..+.+|- -|.+++++.+++..++-.+.=++|-++|....+.+.+
T Consensus 48 ~~~~~~~Dv-----~~~~~v~~~v~~~~~~~g~iDiLVNNAG~~~~~~~~~ 93 (247)
T 3ged_A 48 NLFYFHGDV-----ADPLTLKKFVEYAMEKLQRIDVLVNNACRGSKGILSS 93 (247)
T ss_dssp TEEEEECCT-----TSHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCGGGT
T ss_pred CEEEEEecC-----CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCccc
Confidence 678888763 3778888887766544223446777888777666644
No 318
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Probab=27.69 E-value=3.5e+02 Score=24.63 Aligned_cols=62 Identities=11% Similarity=-0.142 Sum_probs=32.9
Q ss_pred EEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCC
Q 010125 195 VYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTT 261 (517)
Q Consensus 195 v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt 261 (517)
|++....-....+.+..+.-...++..+.+|- -|.+.++++++...++...+=++|.++|..
T Consensus 35 V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~ 96 (280)
T 3tox_A 35 VVVTARNGNALAELTDEIAGGGGEAAALAGDV-----GDEALHEALVELAVRRFGGLDTAFNNAGAL 96 (280)
T ss_dssp EEECCSCHHHHHHHHHHHTTTTCCEEECCCCT-----TCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred EEEEECCHHHHHHHHHHHHhcCCcEEEEECCC-----CCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 44433333344444444322122788887763 367778877766543322344677777643
No 319
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Probab=27.39 E-value=2.5e+02 Score=25.25 Aligned_cols=45 Identities=11% Similarity=-0.028 Sum_probs=28.8
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcccccc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVD 267 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~id 267 (517)
++..+.+|- -|.+.+++.+++..+....+=+++-++|....+.+.
T Consensus 60 ~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~ 104 (265)
T 3lf2_A 60 RLFASVCDV-----LDALQVRAFAEACERTLGCASILVNNAGQGRVSTFA 104 (265)
T ss_dssp CEEEEECCT-----TCHHHHHHHHHHHHHHHCSCSEEEECCCCCCCBCTT
T ss_pred eEEEEeCCC-----CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcc
Confidence 588888774 377788777766544322344677788876655543
No 320
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Probab=26.62 E-value=2.8e+02 Score=25.14 Aligned_cols=44 Identities=11% Similarity=0.027 Sum_probs=28.8
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
++..+.+|- -|.+.+++.+++..+....+=+++-++|....+.+
T Consensus 78 ~~~~~~~Dl-----~~~~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~ 121 (267)
T 3u5t_A 78 KALTAQADV-----SDPAAVRRLFATAEEAFGGVDVLVNNAGIMPLTTI 121 (267)
T ss_dssp CEEEEECCT-----TCHHHHHHHHHHHHHHHSCEEEEEECCCCCCCCCG
T ss_pred eEEEEEcCC-----CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCh
Confidence 788888874 37788888877654432234467777776655544
No 321
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*
Probab=26.61 E-value=3.3e+02 Score=24.68 Aligned_cols=43 Identities=16% Similarity=-0.074 Sum_probs=27.2
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcccc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITA 265 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~ 265 (517)
++..+.+|- -|.+.+++++++..+.-..+=+|+.++|....+.
T Consensus 72 ~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~ 114 (277)
T 2rhc_B 72 EADGRTCDV-----RSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGA 114 (277)
T ss_dssp CEEEEECCT-----TCHHHHHHHHHHHHHHTCSCSEEEECCCCCCCSC
T ss_pred ceEEEECCC-----CCHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCC
Confidence 778888763 3778888887765443223446777777654443
No 322
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*
Probab=26.45 E-value=3.2e+02 Score=24.17 Aligned_cols=64 Identities=13% Similarity=-0.001 Sum_probs=34.8
Q ss_pred EEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcccc
Q 010125 194 IVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITA 265 (517)
Q Consensus 194 ~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~ 265 (517)
+++++........+..+..|. ++..+++|- -|.+.+++++++..+.-..+=+|+.++|....+.
T Consensus 34 V~~~~r~~~~~~~~~~~~~~~---~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~ 97 (249)
T 2ew8_A 34 IAIADLVPAPEAEAAIRNLGR---RVLTVKCDV-----SQPGDVEAFGKQVISTFGRCDILVNNAGIYPLIP 97 (249)
T ss_dssp EEEEESSCCHHHHHHHHHTTC---CEEEEECCT-----TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCC
T ss_pred EEEEcCCchhHHHHHHHhcCC---cEEEEEeec-----CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCC
Confidence 444443331333333333454 788888763 3677888777654432222346777777655443
No 323
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2
Probab=26.40 E-value=2.8e+02 Score=25.00 Aligned_cols=43 Identities=7% Similarity=-0.116 Sum_probs=26.4
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcccc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITA 265 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~ 265 (517)
++..+.+|- -|.+.+++++++..+.-..+=+|+.++|....+.
T Consensus 72 ~~~~~~~Dl-----~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~ 114 (267)
T 1vl8_A 72 ETMAFRCDV-----SNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHP 114 (267)
T ss_dssp CEEEEECCT-----TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCC
T ss_pred eEEEEEcCC-----CCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCC
Confidence 788888763 3778888877654432222336777777654443
No 324
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=26.37 E-value=3.4e+02 Score=24.24 Aligned_cols=44 Identities=18% Similarity=0.014 Sum_probs=27.1
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCC-ccccc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTT-AITAV 266 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt-~~G~i 266 (517)
++..+.+|- -|.+.+++++++..++...+-+++.++|.. ..+.+
T Consensus 59 ~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~ 103 (259)
T 3edm_A 59 SALAIKADL-----TNAAEVEAAISAAADKFGEIHGLVHVAGGLIARKTI 103 (259)
T ss_dssp CCEEEECCT-----TCHHHHHHHHHHHHHHHCSEEEEEECCCCCCCCCCT
T ss_pred ceEEEEcCC-----CCHHHHHHHHHHHHHHhCCCCEEEECCCccCCCCCh
Confidence 678888773 377888888876554322344666677644 33443
No 325
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Probab=26.29 E-value=3.7e+02 Score=24.43 Aligned_cols=69 Identities=10% Similarity=0.040 Sum_probs=38.6
Q ss_pred eEEEeCCCCchHHHHHHHHc-CCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 193 LIVYGSDQTHCALQKAAQIV-GIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 193 ~~v~~s~~~H~s~~kaa~~~-G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
.+++++...-....+.+..+ .....++..+++|- -|.+.+++++++..++...+=+|+-++|....+.+
T Consensus 51 ~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv-----~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~ 120 (281)
T 3v2h_A 51 NIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADM-----TKPSEIADMMAMVADRFGGADILVNNAGVQFVEKI 120 (281)
T ss_dssp EEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCT-----TCHHHHHHHHHHHHHHTSSCSEEEECCCCCCCCCG
T ss_pred EEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCC-----CCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCc
Confidence 35555542333333333322 22223788888763 37888888887655443334467788876655544
No 326
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=26.20 E-value=2.1e+02 Score=25.17 Aligned_cols=45 Identities=9% Similarity=-0.124 Sum_probs=28.5
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcccccc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVD 267 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~id 267 (517)
++..+.+|- -|.+.+++++++..+....+=+++.++|....+.+.
T Consensus 53 ~~~~~~~D~-----~~~~~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~ 97 (235)
T 3l77_A 53 EVFYHHLDV-----SKAESVEEFSKKVLERFGDVDVVVANAGLGYFKRLE 97 (235)
T ss_dssp CEEEEECCT-----TCHHHHHHHCC-HHHHHSSCSEEEECCCCCCCCCTT
T ss_pred eEEEEEecc-----CCHHHHHHHHHHHHHhcCCCCEEEECCccccccCcc
Confidence 788888874 377888887765443322344677888766555443
No 327
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=26.16 E-value=3.2e+02 Score=24.78 Aligned_cols=44 Identities=16% Similarity=0.073 Sum_probs=28.7
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
++..+.+|- -|.+.+++++++..+....+=++|-++|....+.+
T Consensus 82 ~~~~~~~Dv-----~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~ 125 (271)
T 3v2g_A 82 RAVAIRADN-----RDAEAIEQAIRETVEALGGLDILVNSAGIWHSAPL 125 (271)
T ss_dssp CEEEEECCT-----TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCG
T ss_pred cEEEEECCC-----CCHHHHHHHHHHHHHHcCCCcEEEECCCCCCCCCh
Confidence 788888873 37888888887654432234467777776555443
No 328
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2
Probab=25.98 E-value=3.1e+02 Score=24.39 Aligned_cols=43 Identities=14% Similarity=0.039 Sum_probs=27.5
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcccc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITA 265 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~ 265 (517)
++..+++|- -|.+.+++++++..+....+=+|+.++|....+.
T Consensus 52 ~~~~~~~D~-----~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~ 94 (256)
T 1geg_A 52 HAVAVKVDV-----SDRDQVFAAVEQARKTLGGFDVIVNNAGVAPSTP 94 (256)
T ss_dssp CEEEEECCT-----TSHHHHHHHHHHHHHHTTCCCEEEECCCCCCCBC
T ss_pred cEEEEEecC-----CCHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCC
Confidence 678888763 3778888888765443223446777777655443
No 329
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=25.95 E-value=3.1e+02 Score=24.60 Aligned_cols=45 Identities=16% Similarity=-0.000 Sum_probs=28.5
Q ss_pred CCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 217 KNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 217 ~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
.++..+.+|- -|.+.+++++++..++...+=+++.++|....+.+
T Consensus 60 ~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~ 104 (262)
T 3pk0_A 60 GKVIGVQTDV-----SDRAQCDALAGRAVEEFGGIDVVCANAGVFPDAPL 104 (262)
T ss_dssp SCEEEEECCT-----TSHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCT
T ss_pred CcEEEEEcCC-----CCHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCh
Confidence 3788888874 37778887776654432234467777776655544
No 330
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*
Probab=25.58 E-value=2.4e+02 Score=25.57 Aligned_cols=44 Identities=18% Similarity=-0.004 Sum_probs=28.6
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
++..+.+|- -|.+.+++++++..+....+=+|+.++|....+.+
T Consensus 79 ~~~~~~~D~-----~d~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~ 122 (269)
T 4dmm_A 79 EAFAVKADV-----SQESEVEALFAAVIERWGRLDVLVNNAGITRDTLL 122 (269)
T ss_dssp CEEEEECCT-----TSHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCG
T ss_pred cEEEEECCC-----CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCc
Confidence 788888874 37788888877654432234467778876655543
No 331
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=25.39 E-value=45 Score=31.42 Aligned_cols=51 Identities=18% Similarity=0.188 Sum_probs=33.9
Q ss_pred CcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHh
Q 010125 229 SYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQF 279 (517)
Q Consensus 229 ~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~ 279 (517)
++++|.+.+++.++...+.|-.-++++.|.|...+=..+.-.++.+.+.+.
T Consensus 15 dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~ 65 (289)
T 2yxg_A 15 NKEVDFDGLEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDV 65 (289)
T ss_dssp TTEECHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHH
Confidence 358888888888887777775555555555555555556666666666553
No 332
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=25.28 E-value=2.5e+02 Score=25.38 Aligned_cols=45 Identities=11% Similarity=-0.006 Sum_probs=29.4
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcccccc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVD 267 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~id 267 (517)
++..+.+|- -|.+.+++++++..+....+=++|-++|....+.+.
T Consensus 69 ~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~ 113 (270)
T 3is3_A 69 DAIAIKADI-----RQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLK 113 (270)
T ss_dssp CEEEEECCT-----TSHHHHHHHHHHHHHHHSCCCEEECCCCCCCCCCGG
T ss_pred cEEEEEcCC-----CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcc
Confidence 788888874 377888888876544322344677777766555443
No 333
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=25.24 E-value=98 Score=24.83 Aligned_cols=43 Identities=16% Similarity=0.171 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEE
Q 010125 233 SPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVH 284 (517)
Q Consensus 233 d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lh 284 (517)
..+.+.+.+++..+.|-+ .|+++.|.. + +++.++|+++|+.++
T Consensus 67 p~~~v~~~v~e~~~~g~k--~v~~~~G~~-----~--~e~~~~a~~~Girvv 109 (122)
T 3ff4_A 67 NPQNQLSEYNYILSLKPK--RVIFNPGTE-----N--EELEEILSENGIEPV 109 (122)
T ss_dssp CHHHHGGGHHHHHHHCCS--EEEECTTCC-----C--HHHHHHHHHTTCEEE
T ss_pred CHHHHHHHHHHHHhcCCC--EEEECCCCC-----h--HHHHHHHHHcCCeEE
Confidence 345555555555555543 466776652 2 799999999999987
No 334
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*
Probab=25.22 E-value=2.2e+02 Score=25.43 Aligned_cols=62 Identities=11% Similarity=-0.118 Sum_probs=33.9
Q ss_pred EEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccc
Q 010125 194 IVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAIT 264 (517)
Q Consensus 194 ~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G 264 (517)
+++++.. .....+.+..+|. ++..+++|- -|.+.+++++++..+.-..+=+|+.++|....+
T Consensus 32 V~~~~r~-~~~~~~~~~~~~~---~~~~~~~D~-----~~~~~~~~~~~~~~~~~g~iD~lv~nAg~~~~~ 93 (254)
T 1hdc_A 32 VVLADVL-DEEGAATARELGD---AARYQHLDV-----TIEEDWQRVVAYAREEFGSVDGLVNNAGISTGM 93 (254)
T ss_dssp EEEEESC-HHHHHHHHHTTGG---GEEEEECCT-----TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCS
T ss_pred EEEEeCC-HHHHHHHHHHhCC---ceeEEEecC-----CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCC
Confidence 4444432 2333444444444 677787763 367788877765443222234677777755444
No 335
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Probab=24.86 E-value=2.6e+02 Score=25.46 Aligned_cols=59 Identities=10% Similarity=-0.124 Sum_probs=35.4
Q ss_pred EEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCC
Q 010125 194 IVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTT 261 (517)
Q Consensus 194 ~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt 261 (517)
+++++ ..-....+.....|. ++..+.+|- -|.+.+++.+++..+....+=++|.++|..
T Consensus 32 V~~~~-r~~~~~~~~~~~~~~---~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~ 90 (281)
T 3zv4_A 32 VAVLD-KSAERLRELEVAHGG---NAVGVVGDV-----RSLQDQKRAAERCLAAFGKIDTLIPNAGIW 90 (281)
T ss_dssp EEEEE-SCHHHHHHHHHHTBT---TEEEEECCT-----TCHHHHHHHHHHHHHHHSCCCEEECCCCCC
T ss_pred EEEEe-CCHHHHHHHHHHcCC---cEEEEEcCC-----CCHHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 44444 333445555555665 788888873 377888887776544322344677777654
No 336
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Probab=24.73 E-value=30 Score=35.16 Aligned_cols=30 Identities=13% Similarity=0.009 Sum_probs=26.4
Q ss_pred CCccccccChhHHHHHHHHhCCeEEccccc
Q 010125 260 TTAITAVDPLKPLCDVAKQFGIWVHVDAAY 289 (517)
Q Consensus 260 tt~~G~idpl~eI~~i~~~~gi~lhvDaA~ 289 (517)
.+..|..++++++++-||++|+.+++|.+.
T Consensus 72 d~~~Gt~~df~~lv~~aH~~Gi~VilD~V~ 101 (483)
T 3bh4_A 72 RTKYGTKSELQDAIGSLHSRNVQVYGDVVL 101 (483)
T ss_dssp SCSSCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 445688899999999999999999999865
No 337
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*
Probab=24.71 E-value=3.3e+02 Score=24.27 Aligned_cols=44 Identities=14% Similarity=0.055 Sum_probs=26.8
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
++..+++|- -|.+.+++++++..+.-..+=+|+.++|....+.+
T Consensus 58 ~~~~~~~D~-----~~~~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~ 101 (263)
T 3ai3_A 58 RVLEVAVDV-----ATPEGVDAVVESVRSSFGGADILVNNAGTGSNETI 101 (263)
T ss_dssp CEEEEECCT-----TSHHHHHHHHHHHHHHHSSCSEEEECCCCCCCCCT
T ss_pred ceEEEEcCC-----CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCc
Confidence 788888763 36788888776543321123367777776544433
No 338
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A*
Probab=24.64 E-value=30 Score=34.69 Aligned_cols=30 Identities=27% Similarity=0.324 Sum_probs=25.6
Q ss_pred CCccccccChhHHHHHHHHhCCeEEccccc
Q 010125 260 TTAITAVDPLKPLCDVAKQFGIWVHVDAAY 289 (517)
Q Consensus 260 tt~~G~idpl~eI~~i~~~~gi~lhvDaA~ 289 (517)
.+..|..++++++++-||++|+.+++|.+.
T Consensus 80 d~~~Gt~~df~~lv~~~H~~Gi~VilD~V~ 109 (435)
T 1mxg_A 80 ETRFGSKEELVRLIQTAHAYGIKVIADVVI 109 (435)
T ss_dssp SCSSCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 445688889999999999999999999865
No 339
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A
Probab=24.63 E-value=30 Score=35.16 Aligned_cols=30 Identities=20% Similarity=0.023 Sum_probs=26.3
Q ss_pred CCccccccChhHHHHHHHHhCCeEEccccc
Q 010125 260 TTAITAVDPLKPLCDVAKQFGIWVHVDAAY 289 (517)
Q Consensus 260 tt~~G~idpl~eI~~i~~~~gi~lhvDaA~ 289 (517)
....|..++++++++-||++|+.+++|.++
T Consensus 74 dp~~Gt~~df~~lv~~aH~~Gi~VilD~V~ 103 (480)
T 1ud2_A 74 RTKYGTKAQLERAIGSLKSNDINVYGDVVM 103 (480)
T ss_dssp SCSSCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 345788899999999999999999999865
No 340
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=24.56 E-value=45 Score=31.35 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=37.4
Q ss_pred CcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHh
Q 010125 229 SYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQF 279 (517)
Q Consensus 229 ~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~ 279 (517)
++++|.+.+++.++...+.|-.-++++.|.|...+=..+.-.++.+.+.+.
T Consensus 13 dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~ 63 (286)
T 2r91_A 13 GGRLDPELFANHVKNITSKGVDVVFVAGTTGLGPALSLQEKMELTDAATSA 63 (286)
T ss_dssp TTEECHHHHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHH
Confidence 458999999999998888876555666666665555566677777777665
No 341
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=24.30 E-value=3.4e+02 Score=25.17 Aligned_cols=84 Identities=13% Similarity=-0.034 Sum_probs=53.1
Q ss_pred CCchHHHHHHHHcCCCCCCEEEEecCCCCCcc-cCHHHHHHHHHHhHhcCCcceEEEeeccCCccc---cccChhHHHHH
Q 010125 200 QTHCALQKAAQIVGIDVKNFRAIKTTKSSSYG-LSPDSLMAQINSDVEVGLIPLFLCATIGTTAIT---AVDPLKPLCDV 275 (517)
Q Consensus 200 ~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~-~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G---~idpl~eI~~i 275 (517)
..+....+.+.-+|. .+.+.. |. .++++++.+++.-...|...++++--..++..+ ..-++..|..+
T Consensus 132 ~~n~~ll~~~a~~~k----PV~lk~-----G~~~t~~ei~~Ave~i~~~Gn~~i~L~~Rg~~~yp~y~~~~vdl~~i~~l 202 (276)
T 1vs1_A 132 MQNFPLLREVGRSGK----PVLLKR-----GFGNTVEELLAAAEYILLEGNWQVVLVERGIRTFEPSTRFTLDVAAVAVL 202 (276)
T ss_dssp TTCHHHHHHHHHHTC----CEEEEC-----CTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCBHHHHHHH
T ss_pred ccCHHHHHHHHccCC----eEEEcC-----CCCCCHHHHHHHHHHHHHcCCCeEEEEeCCcCCCCCcCcchhCHHHHHHH
Confidence 345555665555564 445543 34 599999999988777776444333312222212 22357778777
Q ss_pred HHHhCCeEEcccccccc
Q 010125 276 AKQFGIWVHVDAAYAGS 292 (517)
Q Consensus 276 ~~~~gi~lhvDaA~g~~ 292 (517)
.+.+++.+++|..|+.+
T Consensus 203 k~~~~lpVi~dssH~~g 219 (276)
T 1vs1_A 203 KEATHLPVIVDPSHPAG 219 (276)
T ss_dssp HHHBSSCEEECCHHHHC
T ss_pred HHHhCCCEEEeCCCCCC
Confidence 77779999999999765
No 342
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=24.21 E-value=30 Score=34.75 Aligned_cols=30 Identities=17% Similarity=0.183 Sum_probs=21.9
Q ss_pred CCccccccChhHHHHHHHHhCCeEEccccc
Q 010125 260 TTAITAVDPLKPLCDVAKQFGIWVHVDAAY 289 (517)
Q Consensus 260 tt~~G~idpl~eI~~i~~~~gi~lhvDaA~ 289 (517)
....|..++++++++-||++|+.+++|.++
T Consensus 63 dp~~Gt~~df~~lv~~aH~~Gi~VilD~V~ 92 (441)
T 1lwj_A 63 KAEYGSEREFKEMIEAFHDSGIKVVLDLPI 92 (441)
T ss_dssp CTTTCCHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CcccCCHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 344567777888888888888888888654
No 343
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=24.16 E-value=22 Score=33.56 Aligned_cols=58 Identities=5% Similarity=-0.079 Sum_probs=37.0
Q ss_pred ecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHhCCeEE
Q 010125 223 KTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVH 284 (517)
Q Consensus 223 p~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lh 284 (517)
|.++ ++++|.+.+++.++...+. -.-++++.|.|...+=..+.-.++.+.+.+ .+.++
T Consensus 9 Pf~~--dg~iD~~~l~~lv~~li~~-v~gl~v~GttGE~~~Ls~~Er~~v~~~~~~-rvpvi 66 (283)
T 2pcq_A 9 PFDR--EGRLDEEAFRELAQALEPL-VDGLLVYGSNGEGVHLTPEERARGLRALRP-RKPFL 66 (283)
T ss_dssp CBCT--TCCBCHHHHHHHHHHHGGG-SSCCEETCTTTTGGGSCHHHHHHHHHTCCC-SSCCE
T ss_pred CCCC--CCCcCHHHHHHHHHHHHhh-CCEEEECCcCcCchhcCHHHHHHHHHHHHh-CCcEE
Confidence 4443 5699999999999876655 444555555555555555556666666655 55554
No 344
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=24.07 E-value=1e+02 Score=24.65 Aligned_cols=49 Identities=8% Similarity=0.159 Sum_probs=32.2
Q ss_pred cCHHHHHHHHHHhHhcC-----CcceEEEeeccCCccccccChhHHHHHHHHhCCeEE
Q 010125 232 LSPDSLMAQINSDVEVG-----LIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVH 284 (517)
Q Consensus 232 ~d~~~Le~~i~~~~~~g-----~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~gi~lh 284 (517)
.|++.+.+.|++..++. ..|+++-+..-. .-.++.+|.++|++||+.++
T Consensus 25 ~d~~~l~~~L~~ki~~aP~FF~~aPVVlDl~~l~----~~~dl~~L~~~l~~~gl~~v 78 (120)
T 3ghf_A 25 AEPEVIRQALEDKIAQAPAFLKHAPVVINVSGLE----SPVNWPELHKIVTSTGLRII 78 (120)
T ss_dssp CCHHHHHHHHHHHHHHSHHHHTTCEEEEEEEECC----SSCCHHHHHHHHHTTTCEEE
T ss_pred CCHHHHHHHHHHHHHhChHhhCCCcEEEEccccC----ChHHHHHHHHHHHHcCCEEE
Confidence 47888888777665432 345444333222 22579999999999998774
No 345
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=24.07 E-value=50 Score=31.38 Aligned_cols=56 Identities=20% Similarity=0.175 Sum_probs=40.0
Q ss_pred CcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHh---CCeEE
Q 010125 229 SYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQF---GIWVH 284 (517)
Q Consensus 229 ~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~---gi~lh 284 (517)
++++|.+.+++.++...+.|-.-++++.|.|...+=..+.-.++.+.+.+. .+.++
T Consensus 27 dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpVi 85 (306)
T 1o5k_A 27 NGELDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVI 85 (306)
T ss_dssp TTEECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEE
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEE
Confidence 468999999999998888876666666666666665666677777777654 35554
No 346
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}
Probab=24.00 E-value=2.8e+02 Score=25.04 Aligned_cols=44 Identities=14% Similarity=0.058 Sum_probs=25.2
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
++..+.+|-. |.+.+++++++..+....+=+++.++|....+.+
T Consensus 71 ~~~~~~~Dv~-----~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~ 114 (266)
T 4egf_A 71 DVHTVAIDLA-----EPDAPAELARRAAEAFGGLDVLVNNAGISHPQPV 114 (266)
T ss_dssp CEEEEECCTT-----STTHHHHHHHHHHHHHTSCSEEEEECCCCCCCCG
T ss_pred cEEEEEecCC-----CHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCh
Confidence 7888888742 4555666555443322233367777776554443
No 347
>3cxt_A Dehydrogenase with different specificities; rossman fold, oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis} PDB: 3cxr_A* 3o03_A*
Probab=23.90 E-value=3.6e+02 Score=24.71 Aligned_cols=43 Identities=14% Similarity=-0.018 Sum_probs=27.2
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcccc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITA 265 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~ 265 (517)
++..+++|- -|.+.+++++++..+.-..+=+|+.++|....+.
T Consensus 84 ~~~~~~~Dv-----~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~ 126 (291)
T 3cxt_A 84 NAHGYVCDV-----TDEDGIQAMVAQIESEVGIIDILVNNAGIIRRVP 126 (291)
T ss_dssp CCEEEECCT-----TCHHHHHHHHHHHHHHTCCCCEEEECCCCCCCCC
T ss_pred eEEEEEecC-----CCHHHHHHHHHHHHHHcCCCcEEEECCCcCCCCC
Confidence 677777763 3788888888765443223446777777654443
No 348
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1
Probab=23.87 E-value=31 Score=35.53 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=26.3
Q ss_pred CCccccccChhHHHHHHHHhCCeEEccccc
Q 010125 260 TTAITAVDPLKPLCDVAKQFGIWVHVDAAY 289 (517)
Q Consensus 260 tt~~G~idpl~eI~~i~~~~gi~lhvDaA~ 289 (517)
.+..|..++++++++-||++|+.+++|.+.
T Consensus 75 dp~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~ 104 (515)
T 1hvx_A 75 RTKYGTKAQYLQAIQAAHAAGMQVYADVVF 104 (515)
T ss_dssp SCSSCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 345688899999999999999999999865
No 349
>3vup_A Beta-1,4-mannanase; TIM barrel, digestive fluid, HYD; 1.05A {Aplysia kurodai}
Probab=23.82 E-value=61 Score=30.20 Aligned_cols=23 Identities=35% Similarity=0.444 Sum_probs=19.1
Q ss_pred cccChhHHHHHHHHhCCeEEccc
Q 010125 265 AVDPLKPLCDVAKQFGIWVHVDA 287 (517)
Q Consensus 265 ~idpl~eI~~i~~~~gi~lhvDa 287 (517)
..+.++++.++|+++|+.+++|-
T Consensus 88 ~~~~~d~~~~~a~~~Gi~vil~~ 110 (351)
T 3vup_A 88 MLDDMKDLLDTAKKYNILVFPCL 110 (351)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCeEEEEe
Confidence 34568999999999999997774
No 350
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*
Probab=23.80 E-value=3.8e+02 Score=24.39 Aligned_cols=42 Identities=17% Similarity=0.220 Sum_probs=27.4
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAIT 264 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G 264 (517)
++..+.+|- -|.+.++++++...+....+=+|+.++|....+
T Consensus 77 ~~~~~~~Dl-----~~~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~ 118 (302)
T 1w6u_A 77 KVHAIQCDV-----RDPDMVQNTVSELIKVAGHPNIVINNAAGNFIS 118 (302)
T ss_dssp CEEEEECCT-----TCHHHHHHHHHHHHHHTCSCSEEEECCCCCCCS
T ss_pred ceEEEEeCC-----CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCC
Confidence 788888763 378888888876544333344677777754443
No 351
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=23.75 E-value=2.9e+02 Score=22.33 Aligned_cols=68 Identities=13% Similarity=0.213 Sum_probs=37.1
Q ss_pred CCeEEEeC-----CCCchHH--HHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcc
Q 010125 191 SKLIVYGS-----DQTHCAL--QKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAI 263 (517)
Q Consensus 191 ~~~~v~~s-----~~~H~s~--~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~ 263 (517)
.+.+||.. ..+.+|. .+...-.|+ .+..+.++. |. .+.+.+.+.......|.++ ..|. ..
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv---~y~~vdI~~------d~-~~~~~L~~~~G~~tvP~Vf--I~G~-~i 101 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAACGE---RFAYVDILQ------NP-DIRAELPKYANWPTFPQLW--VDGE-LV 101 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTTCS---CCEEEEGGG------CH-HHHHHHHHHHTCCSSCEEE--ETTE-EE
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHcCC---ceEEEECCC------CH-HHHHHHHHHHCCCCcCEEE--ECCE-EE
Confidence 56777776 4555553 344455677 788887753 33 3455555444333456433 2333 45
Q ss_pred ccccChhH
Q 010125 264 TAVDPLKP 271 (517)
Q Consensus 264 G~idpl~e 271 (517)
|-.|++.+
T Consensus 102 GG~d~l~~ 109 (135)
T 2wci_A 102 GGCDIVIE 109 (135)
T ss_dssp ESHHHHHH
T ss_pred EChHHHHH
Confidence 66676653
No 352
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum}
Probab=23.70 E-value=31 Score=34.72 Aligned_cols=30 Identities=27% Similarity=0.444 Sum_probs=23.4
Q ss_pred CCccccccChhHHHHHHHHhCCeEEccccc
Q 010125 260 TTAITAVDPLKPLCDVAKQFGIWVHVDAAY 289 (517)
Q Consensus 260 tt~~G~idpl~eI~~i~~~~gi~lhvDaA~ 289 (517)
.+..|..++++++++-|+++|+.+++|...
T Consensus 77 ~~~~Gt~~~~~~lv~~~h~~Gi~vi~D~V~ 106 (449)
T 3dhu_A 77 NPEYGTLADFKALTDRAHELGMKVMLDIVY 106 (449)
T ss_dssp CGGGCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CcccCCHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 345677788888888888888888888754
No 353
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=23.69 E-value=47 Score=31.32 Aligned_cols=56 Identities=18% Similarity=0.221 Sum_probs=37.0
Q ss_pred CcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHh---CCeEE
Q 010125 229 SYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQF---GIWVH 284 (517)
Q Consensus 229 ~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~---gi~lh 284 (517)
++++|.+.+++.++...+.|-.-++++.|.|...+=..+.-.++.+.+.+. .+.++
T Consensus 15 dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpvi 73 (294)
T 2ehh_A 15 EGEVDYEALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAGRIKVI 73 (294)
T ss_dssp TTEECHHHHHHHHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEE
T ss_pred CCCcCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEE
Confidence 458899999988888777775555555555555555556666676666653 35554
No 354
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Probab=23.58 E-value=34 Score=34.85 Aligned_cols=30 Identities=23% Similarity=0.143 Sum_probs=26.5
Q ss_pred CCccccccChhHHHHHHHHhCCeEEccccc
Q 010125 260 TTAITAVDPLKPLCDVAKQFGIWVHVDAAY 289 (517)
Q Consensus 260 tt~~G~idpl~eI~~i~~~~gi~lhvDaA~ 289 (517)
....|..++++++++-||++|+.+++|.+.
T Consensus 76 dp~~Gt~~df~~Lv~~aH~~Gi~VilD~V~ 105 (485)
T 1wpc_A 76 RTKYGTRSQLQAAVTSLKNNGIQVYGDVVM 105 (485)
T ss_dssp SCSSCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 445788899999999999999999999865
No 355
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Probab=23.57 E-value=3.4e+02 Score=24.66 Aligned_cols=44 Identities=11% Similarity=-0.040 Sum_probs=28.6
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
++..+.+|- -|.+.+++++++..+....+=+|+.++|....+.+
T Consensus 94 ~~~~~~~Dl-----~d~~~v~~~~~~~~~~~~~id~li~~Ag~~~~~~~ 137 (285)
T 2c07_A 94 ESSGYAGDV-----SKKEEISEVINKILTEHKNVDILVNNAGITRDNLF 137 (285)
T ss_dssp CEEEEECCT-----TCHHHHHHHHHHHHHHCSCCCEEEECCCCCCCCCT
T ss_pred ceeEEECCC-----CCHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCch
Confidence 788888763 37888888887654433234467777776655544
No 356
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0
Probab=23.56 E-value=3.2e+02 Score=24.80 Aligned_cols=44 Identities=11% Similarity=-0.088 Sum_probs=28.2
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
++..+.+|- -|.+.+++.+++..++...+=++|-++|....+.+
T Consensus 78 ~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~ 121 (280)
T 3pgx_A 78 KALTRVLDV-----RDDAALRELVADGMEQFGRLDVVVANAGVLSWGRV 121 (280)
T ss_dssp CEEEEECCT-----TCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCBCG
T ss_pred eEEEEEcCC-----CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCc
Confidence 788888763 37788888877654432234467777776655544
No 357
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=23.56 E-value=31 Score=35.59 Aligned_cols=28 Identities=14% Similarity=0.080 Sum_probs=22.0
Q ss_pred CccccccChhHHHHHHHHhCCeEEcccc
Q 010125 261 TAITAVDPLKPLCDVAKQFGIWVHVDAA 288 (517)
Q Consensus 261 t~~G~idpl~eI~~i~~~~gi~lhvDaA 288 (517)
...|..++++++++-||++|+.+++|..
T Consensus 87 p~~Gt~~dfk~Lv~~aH~~GI~VilD~V 114 (527)
T 1gcy_A 87 GRYGSDAQLRQAASALGGAGVKVLYDVV 114 (527)
T ss_dssp SSSCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEe
Confidence 5567778888888888888888888864
No 358
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}
Probab=23.43 E-value=3e+02 Score=25.63 Aligned_cols=45 Identities=16% Similarity=0.019 Sum_probs=29.5
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcccccc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVD 267 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~id 267 (517)
++..+.+|- -|.+.+++.+++..+....+=+||.++|....+.+.
T Consensus 108 ~~~~~~~Dv-----~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~ 152 (317)
T 3oec_A 108 RIIARQADV-----RDLASLQAVVDEALAEFGHIDILVSNVGISNQGEVV 152 (317)
T ss_dssp CEEEEECCT-----TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTT
T ss_pred eEEEEECCC-----CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcc
Confidence 788888874 377888887776544322344677788776655543
No 359
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Probab=23.43 E-value=31 Score=35.07 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=25.3
Q ss_pred cCCccccccChhHHHHHHHHhCCeEEccccc
Q 010125 259 GTTAITAVDPLKPLCDVAKQFGIWVHVDAAY 289 (517)
Q Consensus 259 gtt~~G~idpl~eI~~i~~~~gi~lhvDaA~ 289 (517)
.....|..++++++++-||++|+.+++|.++
T Consensus 90 idp~~Gt~~df~~lv~~~H~~Gi~VilD~V~ 120 (478)
T 2guy_A 90 LNENYGTADDLKALSSALHERGMYLMVDVVA 120 (478)
T ss_dssp ECTTSCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred cCccCCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 3456788888999999999999999999754
No 360
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}
Probab=23.31 E-value=3.8e+02 Score=23.82 Aligned_cols=60 Identities=22% Similarity=0.190 Sum_probs=35.5
Q ss_pred EEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCC
Q 010125 194 IVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTT 261 (517)
Q Consensus 194 ~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt 261 (517)
.|+..........+....+|. ++..+.+|- -|.+.+++.+++..++...+=+++.++|..
T Consensus 30 ~v~~~~r~~~~~~~~~~~~~~---~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g~id~lvnnAg~~ 89 (254)
T 3kzv_A 30 VVYGVARSEAPLKKLKEKYGD---RFFYVVGDI-----TEDSVLKQLVNAAVKGHGKIDSLVANAGVL 89 (254)
T ss_dssp EEEEEESCHHHHHHHHHHHGG---GEEEEESCT-----TSHHHHHHHHHHHHHHHSCCCEEEEECCCC
T ss_pred EEEEecCCHHHHHHHHHHhCC---ceEEEECCC-----CCHHHHHHHHHHHHHhcCCccEEEECCccc
Confidence 344332333445555555565 788888874 377888888776544322344677777753
No 361
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=23.22 E-value=3.6e+02 Score=24.02 Aligned_cols=44 Identities=9% Similarity=-0.040 Sum_probs=28.4
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
++..+.+|- -|.+.+++.+++..+....+=+++.++|....+.+
T Consensus 62 ~~~~~~~Dv-----~d~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~ 105 (256)
T 3gaf_A 62 KAIGLECNV-----TDEQHREAVIKAALDQFGKITVLVNNAGGGGPKPF 105 (256)
T ss_dssp CEEEEECCT-----TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCT
T ss_pred cEEEEECCC-----CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCC
Confidence 788888873 37788887777654432234467777776555443
No 362
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=22.89 E-value=1.4e+02 Score=28.86 Aligned_cols=82 Identities=13% Similarity=0.053 Sum_probs=51.3
Q ss_pred CchHHHHHHHHcCCCCCCEEEEecCCCCCcc-cCHHHHHHHHHHhHhcCCcceEEEeeccC-Cc---cccccChhHHHHH
Q 010125 201 THCALQKAAQIVGIDVKNFRAIKTTKSSSYG-LSPDSLMAQINSDVEVGLIPLFLCATIGT-TA---ITAVDPLKPLCDV 275 (517)
Q Consensus 201 ~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~-~d~~~Le~~i~~~~~~g~~p~~vv~t~gt-t~---~G~idpl~eI~~i 275 (517)
.+..+.+.+.-+| ..+.+.. |. .+++++..+++.-...|...+++ +-.|+ +. +=..-++..|..+
T Consensus 201 ~n~~LL~~va~~~----kPVilk~-----G~~~tl~ei~~Ave~i~~~GN~~viL-ceRG~~typ~~~~~~vdl~ai~~l 270 (350)
T 1vr6_A 201 QNFRLLSKAGSYN----KPVLLKR-----GFMNTIEEFLLSAEYIANSGNTKIIL-CERGIRTFEKATRNTLDISAVPII 270 (350)
T ss_dssp TCHHHHHHHHTTC----SCEEEEC-----CTTCCHHHHHHHHHHHHHTTCCCEEE-EECCBCCSCCSSSSBCCTTHHHHH
T ss_pred cCHHHHHHHHccC----CcEEEcC-----CCCCCHHHHHHHHHHHHHCCCCeEEE-EeCCCCCCCCcChhhhhHHHHHHH
Confidence 3444444443333 3455543 34 48999999998877777655444 32332 21 1223467888888
Q ss_pred HHHhCCeEEcccccccc
Q 010125 276 AKQFGIWVHVDAAYAGS 292 (517)
Q Consensus 276 ~~~~gi~lhvDaA~g~~ 292 (517)
.+.+++.+++|..|+.+
T Consensus 271 k~~~~lpVi~dssHs~G 287 (350)
T 1vr6_A 271 RKESHLPILVDPSHSGG 287 (350)
T ss_dssp HHHBSSCEEECHHHHHC
T ss_pred HHhhCCCEEEeCCCCCc
Confidence 88789999999999865
No 363
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=22.72 E-value=33 Score=33.97 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=25.2
Q ss_pred CccccccChhHHHHHHHHhCCeEEccccc
Q 010125 261 TAITAVDPLKPLCDVAKQFGIWVHVDAAY 289 (517)
Q Consensus 261 t~~G~idpl~eI~~i~~~~gi~lhvDaA~ 289 (517)
...|..++++++++-||++|+.+++|..+
T Consensus 63 ~~~Gt~~d~~~lv~~~h~~Gi~VilD~V~ 91 (405)
T 1ht6_A 63 SKYGNAAELKSLIGALHGKGVQAIADIVI 91 (405)
T ss_dssp CTTCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred ccCCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 45688899999999999999999999865
No 364
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0
Probab=22.52 E-value=2.7e+02 Score=25.28 Aligned_cols=44 Identities=18% Similarity=0.027 Sum_probs=28.2
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
++..+.+|- -|.+.+++.+++..+....+=++|.++|....+.+
T Consensus 74 ~~~~~~~D~-----~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~ 117 (277)
T 3tsc_A 74 RIVAAVVDT-----RDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAW 117 (277)
T ss_dssp CEEEEECCT-----TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCG
T ss_pred eEEEEECCC-----CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCh
Confidence 788888763 37788888877654432234467777776655543
No 365
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=22.46 E-value=2.7e+02 Score=25.02 Aligned_cols=38 Identities=11% Similarity=-0.045 Sum_probs=24.5
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccC
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGT 260 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gt 260 (517)
++..+.+|- -|.+.++++++...+....+=+|+.++|.
T Consensus 79 ~~~~~~~D~-----~~~~~v~~~~~~~~~~~g~id~lv~~Ag~ 116 (262)
T 3rkr_A 79 EAESHACDL-----SHSDAIAAFATGVLAAHGRCDVLVNNAGV 116 (262)
T ss_dssp EEEEEECCT-----TCHHHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred ceeEEEecC-----CCHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 778888763 37788888777654332234467777775
No 366
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=22.38 E-value=2.8e+02 Score=21.54 Aligned_cols=57 Identities=14% Similarity=0.209 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHh-cCCCCCCCCCChhhHhhhCCCCCCCCCCCHHHHHHHHHH
Q 010125 20 PLDSEEFRRQGHMIIDFIADYYKN-VEKYPVRSQVEPGYLQKVLPESAPNNPESMETILQDVQQ 82 (517)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~il~~~~~ 82 (517)
+.++++++..+..+++.+..+-.. .=..||.+..-|++..- + ..|.++..|-+.+.+
T Consensus 2 ~~~~~~l~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~i-I-----k~PmdL~tI~~kl~~ 59 (112)
T 3d7c_A 2 MEDPDQLYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEV-I-----RFPIDLKTMTERLRS 59 (112)
T ss_dssp CCSHHHHHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHH-C-----SSCCCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCchhhcCCCCcccccCHHHH-c-----cCCcCHHHHHHHHcC
Confidence 457889999999988888765322 11346666555666532 2 357899998887764
No 367
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=22.19 E-value=48 Score=31.36 Aligned_cols=50 Identities=12% Similarity=0.168 Sum_probs=30.5
Q ss_pred CcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHH
Q 010125 229 SYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQ 278 (517)
Q Consensus 229 ~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~ 278 (517)
++++|.+.+++.++...+.|-.-++++.|.|...+=..+.-.++.+.+.+
T Consensus 15 dg~iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~ 64 (297)
T 2rfg_A 15 NGQVDEKALAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAE 64 (297)
T ss_dssp TTEECHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHH
Confidence 45778888877777776666544455555555444444555566665554
No 368
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=22.12 E-value=2.1e+02 Score=26.11 Aligned_cols=44 Identities=11% Similarity=0.047 Sum_probs=28.0
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
++..+.+|- -|.+.+++.+++..++-..+=+||.++|....+.+
T Consensus 82 ~~~~~~~Dl-----~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~ 125 (276)
T 3r1i_A 82 KALPIRCDV-----TQPDQVRGMLDQMTGELGGIDIAVCNAGIVSVQAM 125 (276)
T ss_dssp CCEEEECCT-----TCHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCG
T ss_pred eEEEEEcCC-----CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCc
Confidence 777888763 37788888877654432234467777776655543
No 369
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*
Probab=22.10 E-value=4.1e+02 Score=23.44 Aligned_cols=44 Identities=20% Similarity=0.040 Sum_probs=28.7
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
++..+.+|- -|.+.+++.+++..++...+=+++.++|....+.+
T Consensus 55 ~~~~~~~Dv-----~d~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~ 98 (246)
T 3osu_A 55 DSFAIQANV-----ADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNLL 98 (246)
T ss_dssp CEEEEECCT-----TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCT
T ss_pred cEEEEEccC-----CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCc
Confidence 788888773 37788888877654432234467778876655544
No 370
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}
Probab=22.09 E-value=2.4e+02 Score=22.54 Aligned_cols=72 Identities=18% Similarity=0.204 Sum_probs=41.8
Q ss_pred CCeEEEeCCCCchHHH--HHHHH---cCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcccc
Q 010125 191 SKLIVYGSDQTHCALQ--KAAQI---VGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITA 265 (517)
Q Consensus 191 ~~~~v~~s~~~H~s~~--kaa~~---~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~ 265 (517)
.+.+||....+.+|.. +.... +|+ .+..+.++.. -|.+++++.+.+.+.....|.+++ .|. ..|-
T Consensus 14 ~~Vvvysk~~Cp~C~~ak~lL~~~~~~~v---~~~~idid~~----~d~~~~~~~l~~~~G~~tVP~IfI--~G~-~IGG 83 (127)
T 3l4n_A 14 SPIIIFSKSTCSYSKGMKELLENEYQFIP---NYYIIELDKH----GHGEELQEYIKLVTGRGTVPNLLV--NGV-SRGG 83 (127)
T ss_dssp CSEEEEECTTCHHHHHHHHHHHHHEEEES---CCEEEEGGGS----TTHHHHHHHHHHHHSCCSSCEEEE--TTE-ECCC
T ss_pred CCEEEEEcCCCccHHHHHHHHHHhcccCC---CcEEEEecCC----CCHHHHHHHHHHHcCCCCcceEEE--CCE-EEcC
Confidence 5567777766666532 22332 245 6777777642 266778888876655555675433 333 4566
Q ss_pred ccChhHH
Q 010125 266 VDPLKPL 272 (517)
Q Consensus 266 idpl~eI 272 (517)
.|++.++
T Consensus 84 ~ddl~~l 90 (127)
T 3l4n_A 84 NEEIKKL 90 (127)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6766544
No 371
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=22.07 E-value=3.2e+02 Score=24.12 Aligned_cols=38 Identities=11% Similarity=-0.029 Sum_probs=24.3
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccC
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGT 260 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gt 260 (517)
++..+.+|- -|.+.+++.+++..+....+=+|+.++|.
T Consensus 59 ~~~~~~~D~-----~~~~~~~~~~~~~~~~~g~id~li~~Ag~ 96 (253)
T 3qiv_A 59 TAISVAVDV-----SDPESAKAMADRTLAEFGGIDYLVNNAAI 96 (253)
T ss_dssp EEEEEECCT-----TSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred cEEEEEccC-----CCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 778888763 37778887777654332234467777765
No 372
>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.95 E-value=3e+02 Score=21.78 Aligned_cols=69 Identities=9% Similarity=0.167 Sum_probs=38.4
Q ss_pred CCeEEEeCCCCchHH--HHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccC
Q 010125 191 SKLIVYGSDQTHCAL--QKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDP 268 (517)
Q Consensus 191 ~~~~v~~s~~~H~s~--~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idp 268 (517)
...++|....+.++- ......+|+ .+..++++... +-..+.+.+.+.......|.+++ .|. ..|..++
T Consensus 27 ~~vvvf~~~~Cp~C~~~~~~L~~~~i---~~~~vdid~~~----~~~~~~~~l~~~~g~~~vP~l~i--~G~-~igg~~~ 96 (130)
T 2cq9_A 27 NCVVIFSKTSCSYCTMAKKLFHDMNV---NYKVVELDLLE----YGNQFQDALYKMTGERTVPRIFV--NGT-FIGGATD 96 (130)
T ss_dssp SSEEEEECSSCSHHHHHHHHHHHHTC---CCEEEETTTST----THHHHHHHHHHHHSSCCSSEEEE--TTE-EEEEHHH
T ss_pred CcEEEEEcCCChHHHHHHHHHHHcCC---CcEEEECcCCc----CcHHHHHHHHHHhCCCCcCEEEE--CCE-EEcChHH
Confidence 456777777777663 345566688 88888887421 23344444544444445676543 333 3444444
Q ss_pred h
Q 010125 269 L 269 (517)
Q Consensus 269 l 269 (517)
+
T Consensus 97 l 97 (130)
T 2cq9_A 97 T 97 (130)
T ss_dssp H
T ss_pred H
Confidence 3
No 373
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2
Probab=21.78 E-value=3.7e+02 Score=24.04 Aligned_cols=40 Identities=8% Similarity=-0.132 Sum_probs=24.7
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTA 262 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~ 262 (517)
++..+.+|- -|.+.+++++++..+....+=+|+.++|...
T Consensus 65 ~~~~~~~D~-----~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~ 104 (267)
T 1iy8_A 65 EVLTTVADV-----SDEAQVEAYVTATTERFGRIDGFFNNAGIEG 104 (267)
T ss_dssp CEEEEECCT-----TSHHHHHHHHHHHHHHHSCCSEEEECCCCCC
T ss_pred eEEEEEccC-----CCHHHHHHHHHHHHHHcCCCCEEEECCCcCC
Confidence 788888763 3678888877654432222336777776543
No 374
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}
Probab=21.56 E-value=3.7e+02 Score=23.89 Aligned_cols=44 Identities=5% Similarity=-0.210 Sum_probs=29.0
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
++..+++|- -|.+.+++++++..+....+=+++.++|....+.+
T Consensus 60 ~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~ 103 (250)
T 3nyw_A 60 EPIVLPLDI-----TDCTKADTEIKDIHQKYGAVDILVNAAAMFMDGSL 103 (250)
T ss_dssp CCEEEECCT-----TCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCC
T ss_pred cceEEeccC-----CCHHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCC
Confidence 678888773 37788888877654432334577778877655544
No 375
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=21.53 E-value=4e+02 Score=24.13 Aligned_cols=80 Identities=11% Similarity=0.150 Sum_probs=50.8
Q ss_pred HHHHHHHcCCCCCCEEEEecCCCC-------C----cccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHH
Q 010125 205 LQKAAQIVGIDVKNFRAIKTTKSS-------S----YGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLC 273 (517)
Q Consensus 205 ~~kaa~~~G~g~~~v~~vp~d~~~-------~----~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~ 273 (517)
+.+.++..|. .-+..+|..+.+ . -.|+.+++++.|....+.-..-..|.--.|+-.|..-..++.+.
T Consensus 44 ~a~~A~~~G~--EvllHlPMep~~~~~~~~gp~~L~~~~s~~ei~~~l~~al~~vP~a~GvnNHmGS~~T~~~~~m~~vm 121 (245)
T 2nly_A 44 QAEIAQAAGL--EVIVHMPLEPKKGKISWLGPSGITSNLSVGEVKSRVRKAFDDIPYAVGLNNHMGSKIVENEKIMRAIL 121 (245)
T ss_dssp HHHHHHHTTC--EEEEEEEECCC--------CCCBCTTCCHHHHHHHHHHHHHHSTTCCEEEEEECTTGGGCHHHHHHHH
T ss_pred HHHHHHHCCC--EEEEEcCCCCCCCCCCCCCcccCcCCCCHHHHHHHHHHHHHHCCCcEEEecccccchhcCHHHHHHHH
Confidence 4455666665 235567764421 0 15788999999988765432222333334676777777899999
Q ss_pred HHHHHhCCeEEcc
Q 010125 274 DVAKQFGIWVHVD 286 (517)
Q Consensus 274 ~i~~~~gi~lhvD 286 (517)
++++++|++++=+
T Consensus 122 ~~l~~~gL~fvDS 134 (245)
T 2nly_A 122 EVVKEKNAFIIDS 134 (245)
T ss_dssp HHHHHTTCEEEEC
T ss_pred HHHHHCCCEEEcC
Confidence 9999999776433
No 376
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}
Probab=21.32 E-value=2.3e+02 Score=26.58 Aligned_cols=44 Identities=9% Similarity=0.072 Sum_probs=29.5
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
++..+.+|- -|.+.++++++...+....+-+|+.++|....+.+
T Consensus 60 ~~~~~~~Dl-----~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~ 103 (319)
T 3ioy_A 60 EVMGVQLDV-----ASREGFKMAADEVEARFGPVSILCNNAGVNLFQPI 103 (319)
T ss_dssp GEEEEECCT-----TCHHHHHHHHHHHHHHTCCEEEEEECCCCCCCCCG
T ss_pred eEEEEECCC-----CCHHHHHHHHHHHHHhCCCCCEEEECCCcCCCCCc
Confidence 677788763 37888888887765543345578888876555543
No 377
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Probab=21.30 E-value=4.2e+02 Score=23.29 Aligned_cols=43 Identities=14% Similarity=0.100 Sum_probs=26.9
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcccc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITA 265 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~ 265 (517)
++..+++|- -|.+.+++++++..+....+=+|+.++|....+.
T Consensus 55 ~~~~~~~D~-----~~~~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~ 97 (246)
T 2uvd_A 55 DAIAVRADV-----ANAEDVTNMVKQTVDVFGQVDILVNNAGVTKDNL 97 (246)
T ss_dssp CEEEEECCT-----TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCBC
T ss_pred cEEEEEcCC-----CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCC
Confidence 778888763 3778888887764433223346777777655443
No 378
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=21.30 E-value=4e+02 Score=23.88 Aligned_cols=44 Identities=14% Similarity=-0.059 Sum_probs=28.2
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
++..+.+|- -|.+.+++++++..+....+=+|+.++|....+.+
T Consensus 76 ~~~~~~~Dl-----~~~~~v~~~~~~~~~~~g~id~li~nAg~~~~~~~ 119 (269)
T 3gk3_A 76 DFKAYAVDV-----ADFESCERCAEKVLADFGKVDVLINNAGITRDATF 119 (269)
T ss_dssp CCEEEECCT-----TCHHHHHHHHHHHHHHHSCCSEEEECCCCCCCBCT
T ss_pred ceEEEEecC-----CCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCcch
Confidence 788888773 37778887776654432234467788876655544
No 379
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0
Probab=21.28 E-value=2.9e+02 Score=24.96 Aligned_cols=59 Identities=15% Similarity=-0.004 Sum_probs=34.1
Q ss_pred EEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCC
Q 010125 194 IVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTT 261 (517)
Q Consensus 194 ~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt 261 (517)
+++++ .......+.+..+|. ++..+.+|- -|.+.+++++++..+.-..+=+++.++|..
T Consensus 38 V~~~~-r~~~~~~~~~~~~~~---~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g~id~lv~nAg~~ 96 (271)
T 3tzq_B 38 VVLAD-LPETDLAGAAASVGR---GAVHHVVDL-----TNEVSVRALIDFTIDTFGRLDIVDNNAAHS 96 (271)
T ss_dssp EEEEE-CTTSCHHHHHHHHCT---TCEEEECCT-----TCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred EEEEc-CCHHHHHHHHHHhCC---CeEEEECCC-----CCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 44444 333345555555565 777887763 377788877765543322334677777654
No 380
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=21.14 E-value=56 Score=30.80 Aligned_cols=56 Identities=13% Similarity=0.123 Sum_probs=38.7
Q ss_pred CcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccccChhHHHHHHHHh---CCeEEc
Q 010125 229 SYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQF---GIWVHV 285 (517)
Q Consensus 229 ~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~idpl~eI~~i~~~~---gi~lhv 285 (517)
+ ++|.+.+++.++...+.|-.-+++..|.|...+=..+.-.++.+.+.+. .+.+++
T Consensus 18 d-~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpvia 76 (292)
T 3daq_A 18 N-KVNLEALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVPVIA 76 (292)
T ss_dssp T-EECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEE
T ss_pred C-CcCHHHHHHHHHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 5 8888888888888777776656666666666655666666777776654 355544
No 381
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2
Probab=20.96 E-value=4.5e+02 Score=23.53 Aligned_cols=43 Identities=5% Similarity=-0.075 Sum_probs=27.5
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCcccc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITA 265 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~ 265 (517)
++..+.+|- -|.+.+++++++..+....+=+|+.++|....+.
T Consensus 81 ~~~~~~~Dl-----~~~~~v~~~~~~~~~~~g~iD~li~~Ag~~~~~~ 123 (272)
T 1yb1_A 81 KVHTFVVDC-----SNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSD 123 (272)
T ss_dssp CEEEEECCT-----TCHHHHHHHHHHHHHHTCCCSEEEECCCCCCCCC
T ss_pred eEEEEEeeC-----CCHHHHHHHHHHHHHHCCCCcEEEECCCcCCCcc
Confidence 788888763 3778888887765443223446777777655443
No 382
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2
Probab=20.93 E-value=4.1e+02 Score=23.66 Aligned_cols=39 Identities=18% Similarity=0.090 Sum_probs=24.5
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCC
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTT 261 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt 261 (517)
++..+++|- -|.+.+++++++..+.-..+=+|+.++|..
T Consensus 57 ~~~~~~~D~-----~~~~~~~~~~~~~~~~~g~id~lv~nAg~~ 95 (262)
T 1zem_A 57 EARSYVCDV-----TSEEAVIGTVDSVVRDFGKIDFLFNNAGYQ 95 (262)
T ss_dssp CEEEEECCT-----TCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred cEEEEEecC-----CCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 688888763 377888877765543222233677777754
No 383
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=20.91 E-value=2.2e+02 Score=19.82 Aligned_cols=32 Identities=9% Similarity=0.259 Sum_probs=20.6
Q ss_pred CeEEEeCCCCchH--HHHHHHHcCCCCCCEEEEecCC
Q 010125 192 KLIVYGSDQTHCA--LQKAAQIVGIDVKNFRAIKTTK 226 (517)
Q Consensus 192 ~~~v~~s~~~H~s--~~kaa~~~G~g~~~v~~vp~d~ 226 (517)
..++|.+..+.++ +.......|+ .+..+.++.
T Consensus 2 ~i~~y~~~~C~~C~~~~~~l~~~~i---~~~~~~i~~ 35 (82)
T 1fov_A 2 NVEIYTKETCPYCHRAKALLSSKGV---SFQELPIDG 35 (82)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHHTC---CCEEEECTT
T ss_pred cEEEEECCCChhHHHHHHHHHHCCC---CcEEEECCC
Confidence 3566766666655 3344556688 888888864
No 384
>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*
Probab=20.89 E-value=3.8e+02 Score=23.94 Aligned_cols=44 Identities=9% Similarity=-0.020 Sum_probs=28.5
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
++..+.+|- -|.+.+++.+++..+....+-+|+.++|....+.+
T Consensus 77 ~~~~~~~Dl-----~~~~~~~~~~~~~~~~~g~id~li~nAg~~~~~~~ 120 (267)
T 4iiu_A 77 NGRLLSFDV-----ANREQCREVLEHEIAQHGAWYGVVSNAGIARDAAF 120 (267)
T ss_dssp CEEEEECCT-----TCHHHHHHHHHHHHHHHCCCSEEEECCCCCCCCCG
T ss_pred ceEEEEecC-----CCHHHHHHHHHHHHHHhCCccEEEECCCCCCCCcc
Confidence 788888763 37788888877654432234467777776655543
No 385
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus}
Probab=20.75 E-value=35 Score=34.52 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=13.0
Q ss_pred cccccChhHHHHHHHHhCCeEEccc
Q 010125 263 ITAVDPLKPLCDVAKQFGIWVHVDA 287 (517)
Q Consensus 263 ~G~idpl~eI~~i~~~~gi~lhvDa 287 (517)
.|..++++++++-||++|+.+++|.
T Consensus 93 ~Gt~~df~~lv~~~h~~Gi~VilD~ 117 (475)
T 2z1k_A 93 LGGNEALRHLLEVAHAHGVRVILDG 117 (475)
T ss_dssp GTCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 3444555555555555555555554
No 386
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=20.59 E-value=37 Score=34.90 Aligned_cols=30 Identities=17% Similarity=0.172 Sum_probs=24.2
Q ss_pred CCccccccChhHHHHHHHHhCCeEEccccc
Q 010125 260 TTAITAVDPLKPLCDVAKQFGIWVHVDAAY 289 (517)
Q Consensus 260 tt~~G~idpl~eI~~i~~~~gi~lhvDaA~ 289 (517)
....|..++++++++-||++|+.|++|.++
T Consensus 73 dp~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~ 102 (549)
T 4aie_A 73 DPQYGTMADMDELISKAKEHHIKIVMDLVV 102 (549)
T ss_dssp CTTTCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CcccCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 445677888889999999999999888764
No 387
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*
Probab=20.52 E-value=3.8e+02 Score=24.25 Aligned_cols=42 Identities=19% Similarity=0.041 Sum_probs=26.9
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAIT 264 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G 264 (517)
++..+.+|- -|.+.+++++++..+....+=++|.++|....+
T Consensus 77 ~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~ 118 (286)
T 3uve_A 77 RIVTAEVDV-----RDYDALKAAVDSGVEQLGRLDIIVANAGIGNGG 118 (286)
T ss_dssp CEEEEECCT-----TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCC
T ss_pred ceEEEEcCC-----CCHHHHHHHHHHHHHHhCCCCEEEECCcccCCC
Confidence 788888874 377888887776544322344677777765444
No 388
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Probab=20.49 E-value=37 Score=34.52 Aligned_cols=30 Identities=23% Similarity=0.320 Sum_probs=23.0
Q ss_pred CCccccccChhHHHHHHHHhCCeEEccccc
Q 010125 260 TTAITAVDPLKPLCDVAKQFGIWVHVDAAY 289 (517)
Q Consensus 260 tt~~G~idpl~eI~~i~~~~gi~lhvDaA~ 289 (517)
....|..++++++++-||++|+.+++|.++
T Consensus 75 dp~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~ 104 (488)
T 1wza_A 75 NPDYGTLEDFHKLVEAAHQRGIKVIIDLPI 104 (488)
T ss_dssp CGGGCCHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 344677788888888888888888888754
No 389
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2
Probab=20.34 E-value=4.7e+02 Score=23.47 Aligned_cols=44 Identities=14% Similarity=-0.044 Sum_probs=27.7
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcC-CcceEEEeeccCCccccc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVG-LIPLFLCATIGTTAITAV 266 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g-~~p~~vv~t~gtt~~G~i 266 (517)
++..+.+|- -|.+.++++++...+.- ..+=+|+.++|....+.+
T Consensus 71 ~~~~~~~D~-----~~~~~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~ 115 (273)
T 1ae1_A 71 NVEGSVCDL-----LSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEA 115 (273)
T ss_dssp CEEEEECCT-----TCHHHHHHHHHHHHHHTTSCCCEEEECCCCCCCCCT
T ss_pred ceEEEECCC-----CCHHHHHHHHHHHHHHcCCCCcEEEECCCCCCCCCh
Confidence 788888763 37788888877654432 234467777776554443
No 390
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Probab=20.28 E-value=3.9e+02 Score=23.62 Aligned_cols=62 Identities=10% Similarity=-0.094 Sum_probs=34.6
Q ss_pred EEEeCCCCchHHHHHHHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccc
Q 010125 194 IVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAIT 264 (517)
Q Consensus 194 ~v~~s~~~H~s~~kaa~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G 264 (517)
+++++.. .....+..+.++. ++..+++|- -|.+.+++++++..+....+=+|+.++|....+
T Consensus 39 V~~~~r~-~~~~~~~~~~~~~---~~~~~~~D~-----~~~~~v~~~~~~~~~~~g~id~li~~Ag~~~~~ 100 (265)
T 2o23_A 39 AVLLDLP-NSGGEAQAKKLGN---NCVFAPADV-----TSEKDVQTALALAKGKFGRVDVAVNCAGIAVAS 100 (265)
T ss_dssp EEEEECT-TSSHHHHHHHHCT---TEEEEECCT-----TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCC
T ss_pred EEEEeCC-cHhHHHHHHHhCC---ceEEEEcCC-----CCHHHHHHHHHHHHHHCCCCCEEEECCccCCCC
Confidence 4444432 2234444444565 788888774 367788887765443222334677777755443
No 391
>1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12
Probab=20.24 E-value=93 Score=30.59 Aligned_cols=58 Identities=22% Similarity=0.230 Sum_probs=36.7
Q ss_pred cCHHHHHHHHHHhHhcCCcceEEEeeccCC-ccccccChhHHHHHHHHhCCeEEccccc
Q 010125 232 LSPDSLMAQINSDVEVGLIPLFLCATIGTT-AITAVDPLKPLCDVAKQFGIWVHVDAAY 289 (517)
Q Consensus 232 ~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt-~~G~idpl~eI~~i~~~~gi~lhvDaA~ 289 (517)
-+.+...+.|+...+.|..-++-.+-.+.. ..-....+++|.+.|+++|+.+++|=+-
T Consensus 38 ~~~~~~~~Yi~~a~~~Gf~~IFTSL~~~e~~~~~~~~~~~~l~~~a~~~g~~vi~DVsp 96 (385)
T 1x7f_A 38 STKEKDMAYISAAARHGFSRIFTCLLSVNRPKEEIVAEFKEIINHAKDNNMEVILDVAP 96 (385)
T ss_dssp SCHHHHHHHHHHHHTTTEEEEEEEECCC--------HHHHHHHHHHHHTTCEEEEEECT
T ss_pred CCHHHHHHHHHHHHHCCCCEEEccCCccCCChHHHHHHHHHHHHHHHHCCCEEEEECCH
Confidence 356666677877777775444433333321 2234567899999999999999999643
No 392
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Probab=20.17 E-value=4e+02 Score=23.78 Aligned_cols=44 Identities=16% Similarity=0.102 Sum_probs=26.1
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
.+..+.+|- -|.+.+++++++..++-..+=+|+.++|....+.+
T Consensus 54 ~~~~~~~D~-----~~~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~ 97 (260)
T 1nff_A 54 AARYVHLDV-----TQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTI 97 (260)
T ss_dssp GEEEEECCT-----TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCT
T ss_pred CceEEEecC-----CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCh
Confidence 567777763 37788888776544322223467777776554433
No 393
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=20.14 E-value=2.6e+02 Score=20.44 Aligned_cols=69 Identities=13% Similarity=0.140 Sum_probs=37.9
Q ss_pred CCeEEEeCCCCchHH-----HHH---HHHcCCCCCCEEEEecCCCCCcccCHHHHHHHHHHhHh--cCCcceEEEeeccC
Q 010125 191 SKLIVYGSDQTHCAL-----QKA---AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVE--VGLIPLFLCATIGT 260 (517)
Q Consensus 191 ~~~~v~~s~~~H~s~-----~ka---a~~~G~g~~~v~~vp~d~~~~~~~d~~~Le~~i~~~~~--~g~~p~~vv~t~gt 260 (517)
++.+||.+..++++- .++ ..-.|+ .+..+.++. |. +..+.+.+... ....|.+++ +.
T Consensus 2 ~~v~ly~~~~C~~c~~~~~~~~ak~~L~~~~i---~~~~~di~~------~~-~~~~~l~~~~g~~~~~vP~ifi---~g 68 (93)
T 1t1v_A 2 SGLRVYSTSVTGSREIKSQQSEVTRILDGKRI---QYQLVDISQ------DN-ALRDEMRTLAGNPKATPPQIVN---GN 68 (93)
T ss_dssp CCEEEEECSSCSCHHHHHHHHHHHHHHHHTTC---CCEEEETTS------CH-HHHHHHHHHTTCTTCCSCEEEE---TT
T ss_pred CCEEEEEcCCCCCchhhHHHHHHHHHHHHCCC---ceEEEECCC------CH-HHHHHHHHHhCCCCCCCCEEEE---CC
Confidence 356788888888772 333 344577 788887753 33 33444444332 224564432 23
Q ss_pred CccccccChhHH
Q 010125 261 TAITAVDPLKPL 272 (517)
Q Consensus 261 t~~G~idpl~eI 272 (517)
...|..|++.++
T Consensus 69 ~~igG~d~l~~l 80 (93)
T 1t1v_A 69 HYCGDYELFVEA 80 (93)
T ss_dssp EEEEEHHHHHHH
T ss_pred EEEeCHHHHHHH
Confidence 345666665554
No 394
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}
Probab=20.04 E-value=3.1e+02 Score=25.57 Aligned_cols=44 Identities=16% Similarity=-0.070 Sum_probs=28.3
Q ss_pred CEEEEecCCCCCcccCHHHHHHHHHHhHhcCCcceEEEeeccCCccccc
Q 010125 218 NFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAV 266 (517)
Q Consensus 218 ~v~~vp~d~~~~~~~d~~~Le~~i~~~~~~g~~p~~vv~t~gtt~~G~i 266 (517)
++..+.+|- -|.+.+++.+++..+....+=+||.++|....+.+
T Consensus 87 ~~~~~~~Dv-----~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~ 130 (322)
T 3qlj_A 87 EAVADGSNV-----ADWDQAAGLIQTAVETFGGLDVLVNNAGIVRDRMI 130 (322)
T ss_dssp EEEEECCCT-----TSHHHHHHHHHHHHHHHSCCCEEECCCCCCCCCCG
T ss_pred cEEEEECCC-----CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCc
Confidence 778887763 37788888777654432234477778876655544
Done!