RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 010125
(517 letters)
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin;
HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB:
1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Length = 486
Score = 632 bits (1631), Expect = 0.0
Identities = 198/499 (39%), Positives = 291/499 (58%), Gaps = 37/499 (7%)
Query: 21 LDSEEFRRQGHMIIDFIADYYKNVEKYPVRSQVEPGYLQKVLPESAPNNPESMETILQDV 80
+++ +FRR+G ++D++ADY + +E V V+PGYL+ ++P +AP P++ E ILQDV
Sbjct: 1 MNASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDV 60
Query: 81 QQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMD 140
++ I+PG+THW SP +FAYFP++ S L +ML +GF+W +SPA TELE ++MD
Sbjct: 61 EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMD 120
Query: 141 WLGQMLKLPKSFLF--SGNGGGVIQGTTCEAILCTLTAARDRVLNKIGREN--------I 190
WLG+ML+LP++FL +G GGGVIQG+ EA L L AAR +V+ ++ + +
Sbjct: 121 WLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVL 180
Query: 191 SKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLI 250
KL+ Y SDQ H ++++A I G+ +AI + + + +L + D GLI
Sbjct: 181 EKLVAYASDQAHSSVERAGLIGGV---KLKAIPSD--GKFAMRASALQEALERDKAAGLI 235
Query: 251 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGAD 310
P F+ AT+GTT+ + D L + + + IW+HVDAAYAGSA ICPEFRH ++GVE AD
Sbjct: 236 PFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFAD 295
Query: 311 SFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSR 370
SF+ N HKW DC +WVK L + +P YLK+ S + DY+ WQ+ L R
Sbjct: 296 SFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGR 355
Query: 371 RFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSP 430
RFRSLK+WFV R YGV L+ ++R HV ++ FE V D RFE+ +VCFR+
Sbjct: 356 RFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKG 415
Query: 431 SPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGAT 490
S + N LLE IN++ K ++ L G + +RFA +
Sbjct: 416 S----------------------DGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSR 453
Query: 491 LTEKRHVVVAWTVVQQHLE 509
E HV +AW ++
Sbjct: 454 KVESGHVRLAWEHIRGLAA 472
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
sapiens}
Length = 481
Score = 628 bits (1621), Expect = 0.0
Identities = 188/503 (37%), Positives = 275/503 (54%), Gaps = 40/503 (7%)
Query: 19 NPLDSEEFRRQGHMIIDFIADYYKNVEKYPVRSQVEPGYLQKVLPESAPNNPESMETILQ 78
++ EE+R +G ++D+I Y V + V V+PGYL+ LPESAP +P+S ++I
Sbjct: 4 GSMEPEEYRERGREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFG 63
Query: 79 DVQQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIV 138
D+++ I+PG+ HWQSP+ AY+P+ S LG+ML+ N +GF W SSPA TELE V
Sbjct: 64 DIERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNV 123
Query: 139 MDWLGQMLKLPKSFLF---SGNGGGVIQGTTCEAILCTLTAARDRVLNKIGREN------ 189
MDWL +ML LP+ FL S GGGV+Q T E+ L L AAR + ++
Sbjct: 124 MDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADES 183
Query: 190 --ISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEV 247
++L+ Y SDQ H +++KA I + + + ++ L ++L I D +
Sbjct: 184 SLNARLVAYASDQAHSSVEKAGLISLV---KMKFLPV--DDNFSLRGEALQKAIEEDKQR 238
Query: 248 GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE 307
GL+P+F+CAT+GTT + A D L L + + G+W+H+DAAYAG+A +CPEFR F+ G+E
Sbjct: 239 GLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIE 298
Query: 308 GADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQIT 367
ADSF+ N KW DC WVKD L + S NP YL++ + D+ WQI
Sbjct: 299 YADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANSG--VATDFMHWQIP 356
Query: 368 LSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFR 427
LSRRFRS+KLWFVIR++GV NL+ +R MAK FE LV D FEI H +V FR
Sbjct: 357 LSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFR 416
Query: 428 VSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFAT 487
+ N +L+ I +G+ ++ A + IRF
Sbjct: 417 LKGP----------------------NSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTV 454
Query: 488 GATLTEKRHVVVAWTVVQQHLEA 510
+ T + ++ W +++
Sbjct: 455 TSQFTTRDDILRDWNLIRDAATL 477
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha
beta protein, alternative splicing, catecholamine
biosynthesis, lyase; HET: LLP; 1.75A {Drosophila
melanogaster}
Length = 475
Score = 623 bits (1609), Expect = 0.0
Identities = 191/499 (38%), Positives = 286/499 (57%), Gaps = 40/499 (8%)
Query: 21 LDSEEFRRQGHMIIDFIADYYKNVEKYPVRSQVEPGYLQKVLPESAPNNPESMETILQDV 80
+++ EF+ ++DFIA+Y +N+ + V +V+PGYL+ ++P++AP PE + ++QD+
Sbjct: 1 MEAPEFKDFAKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDI 60
Query: 81 QQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMD 140
++ I+PG+THW SP + AYFP++ S + +MLS +GF WI+SPA TELE ++MD
Sbjct: 61 ERVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMD 120
Query: 141 WLGQMLKLPKSFLFS--GNGGGVIQGTTCEAILCTLTAARDRVLNKIGREN--------I 190
WLG+ML+LP FL G GGGVIQGT E+ L L A+ + L ++ + +
Sbjct: 121 WLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTIL 180
Query: 191 SKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLI 250
KL+ Y SDQ H ++++A + G+ +++ + S ++ + +L I DV GLI
Sbjct: 181 GKLVGYCSDQAHSSVERAGLLGGVKLRSVQ------SENHRMRGAALEKAIEQDVAEGLI 234
Query: 251 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGAD 310
P + T+GTT A D L V + +W+HVDAAYAGSA ICPE+RH + G+E AD
Sbjct: 235 PFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESAD 294
Query: 311 SFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSR 370
SF+ N HKW DC +W+KDP +V++ + +P YLK+ S DY+ WQI L R
Sbjct: 295 SFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGS--APDYRHWQIPLGR 352
Query: 371 RFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSP 430
RFR+LKLWFV+R YGV NL+ +R H N AK F L D RFE+ + +VCFR+
Sbjct: 353 RFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKG 412
Query: 431 SPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGAT 490
S NE N LL+ IN G ++ A + +Y +R A +
Sbjct: 413 S----------------------NERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSR 450
Query: 491 LTEKRHVVVAWTVVQQHLE 509
T+ + +W V +
Sbjct: 451 FTQSEDMEYSWKEVSAAAD 469
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Length = 504
Score = 600 bits (1549), Expect = 0.0
Identities = 104/513 (20%), Positives = 203/513 (39%), Gaps = 26/513 (5%)
Query: 6 SDPELKYNSGSFTNPLDSEEFRRQGHMIIDFIADYYKNVEK--YPVRSQVEPGYLQKVLP 63
+D + E+ + ++D + +Y + V P L + +
Sbjct: 1 TDFSNLFARDLLPAKNGEEQTVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGME 60
Query: 64 E---SAPNNPESMETILQDVQQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNI 120
++PES+E IL D + + G+ P +F + I G GE L+S N
Sbjct: 61 GFNLELSDHPESLEQILVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANT 119
Query: 121 VGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDR 180
F + +P +E I + + +++ S +G G+ + + ++ AAR +
Sbjct: 120 NMFTYEIAPVFVLMEQITLKKMREIVGWS-----SKDGDGIFSPGGAISNMYSIMAARYK 174
Query: 181 VLNKI---GRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSL 237
++ G + KL+++ S+Q+H +++KA +G N IK + P
Sbjct: 175 YFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCN--ERGKIIPADF 232
Query: 238 MAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICP 297
A+I + G +P ++ AT GTT A DP++ + D+ +++ +W+HVDAA+ G +
Sbjct: 233 EAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSR 292
Query: 298 EFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQ 357
+ RH ++G+E A+S + N HK L C + VK+ L YL +
Sbjct: 293 KHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDV 352
Query: 358 VVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVF 417
D D I R K W + + G + + + +A+ + + FE+VF
Sbjct: 353 SYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVF 412
Query: 418 --PCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHA 475
VCF P + + V E++++ ++ + SG + +
Sbjct: 413 NGEPEHTNVCFWYIPQSL-------RGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQ 465
Query: 476 -VLGGIYAIRFATGATLTEKRHVVVAWTVVQQH 507
R + + +++
Sbjct: 466 PQGDKANFFRMVISNPAATQSDIDFLIEEIERL 498
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 585 bits (1509), Expect = 0.0
Identities = 109/517 (21%), Positives = 201/517 (38%), Gaps = 28/517 (5%)
Query: 1 MGSLTSDPELKYNSGSF----TNPLDSEEF-RRQGHMIIDFIADYYKNVEKYPVRSQVEP 55
+G+ + +S + +P+ E R +++D +V + EP
Sbjct: 13 LGTENLYFQSMADSEALPSLAGDPVAVEALLRAVFGVVVDEAIQKGTSVSQKVC-EWKEP 71
Query: 56 GYLQKVLPESAPNNPESMETILQDVQQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLS 115
L+++L + ES + IL+ + I + P +F S G +++
Sbjct: 72 EELKQLLDLELRSQGESQKQILERCRAVIRYSVKTG-HPRFFNQLFSGLDPHALAGRIIT 130
Query: 116 SGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLT 175
N + + +P +E V+ L ++ +G G+ + + +
Sbjct: 131 ESLNTSQYTYEIAPVFVLMEEEVLRKLRALVGWS-------SGDGIFCPGGSISNMYAVN 183
Query: 176 AARDRVLNKI---GRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGL 232
AR + G + L ++ S + H ++QK A +G+ + R +K +
Sbjct: 184 LARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKAD--ERGKM 241
Query: 233 SPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGS 292
P+ L QI G +P + AT GTT + A DPL+ + DV ++ G+W+HVDAA+ GS
Sbjct: 242 VPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGS 301
Query: 293 ACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPR-ALVSSLSTNPEYLKNK 351
+ RH +DG++ ADS + N HK A L C L ++D L + YL +
Sbjct: 302 VLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQ 361
Query: 352 ATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDK 411
+D D + RR LKLW + + G L + +A+ + +
Sbjct: 362 DKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKRE 421
Query: 412 RFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAY 471
FE+V F VCF P + + Y E++++ L E + G
Sbjct: 422 GFELVMEPEFVNVCFWFVPPSLRGKQESPDY-------HERLSKVAPVLKERMVKEGSMM 474
Query: 472 MTHAVLGG-IYAIRFATGATLTEKRHVVVAWTVVQQH 507
+ + G R + + +++
Sbjct: 475 IGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERL 511
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
decarboxylase; structural genomics, APC91511.1,
glutamate decarboxylase; HET: MSE; 1.81A {Vibrio
parahaemolyticus}
Length = 497
Score = 583 bits (1506), Expect = 0.0
Identities = 106/500 (21%), Positives = 194/500 (38%), Gaps = 43/500 (8%)
Query: 18 TNPLDSEEFRRQGHMIIDFIADYYKNVEKYPVRSQVEPGYLQKVLPE-SAPNNPESMETI 76
T L S EF + ++ V S ++P L+ + N ++++
Sbjct: 26 TGELGSAEFASVMSHTTSAMKSVFEQVNA--PYSGMDPKALEDAINAVDLDNKNAPLKSV 83
Query: 77 LQDVQQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELEN 136
+ DV + + Q P+ A+ + + E + + N +W + +AT +E
Sbjct: 84 IDDVAELVAKNAIFTQHPDCIAHLHTPPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQ 143
Query: 137 IVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENI------ 190
V++WL L + G+ ++ L ARD + +K+ +I
Sbjct: 144 KVVNWLCDKYDLSEK------ADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLP 197
Query: 191 ---SKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEV 247
KL + S ++H +QK+A +G+ K + + + L I
Sbjct: 198 DYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDAN--ADGTMDITKLDEVIAQAKAE 255
Query: 248 GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE 307
GLIP + T GTT A+D L + D+A + +W+HVD AY G A I + + GVE
Sbjct: 256 GLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGG-ALILSSHKSRLKGVE 314
Query: 308 GADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQIT 367
A S S++ HK F+ T+ C L V D L + +YL + E + + D I
Sbjct: 315 RAHSISVDFHKLFYQTISCGALLVNDKSNF-KFLLHHADYLNREHDE---LPNLVDKSIA 370
Query: 368 LSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFR 427
++RF +LK++ ++N G L + ++ + +FE++ + V FR
Sbjct: 371 TTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEPSLSTVLFR 430
Query: 428 VSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFAT 487
+ E ++E N+ L G A + ++ G A++F
Sbjct: 431 ATH------------------ETADLDELNKALRLEALTRGIAVLGETIVDGKTALKFTI 472
Query: 488 GATLTEKRHVVVAWTVVQQH 507
+ +
Sbjct: 473 LNPCLTTSDFESLLSKINML 492
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 156 bits (396), Expect = 5e-42
Identities = 67/428 (15%), Positives = 124/428 (28%), Gaps = 47/428 (10%)
Query: 26 FRRQGHMIIDFIADYYKNVEKYPVRSQVEPGYLQKVLPESAPNNPESMETILQDVQQHIV 85
+ Q D D+ ++ + ++ P IL ++
Sbjct: 36 IQSQPPARRDPTMDWLASLRSQIKPYRDRFPSHARL-----PRAGLPRAEILAEIAAMGA 90
Query: 86 PGITHWQSPNYFAY-FPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQ 144
W+ + FL E+ + + P+ + E V+
Sbjct: 91 AESPAWRDGYASGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAH 150
Query: 145 MLKLPKSFLFSGNGGGVI-QGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHC 203
ML + G G + G T E++L + RD + I+ H
Sbjct: 151 MLGGDAA---GGTVCGTVTSGGT-ESLLLAMKTYRDW---ARATKGITAPEAVVPVSAHA 203
Query: 204 ALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAI 263
A KAAQ GI + Y ++ I + + + +
Sbjct: 204 AFDKAAQYFGIKL---VRTPLDAD--YRADVAAMREAITPN------TVVVAGSAPGYPH 252
Query: 264 TAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPE-----FRHFIDGVEGADSFSLNAHK 318
VDP+ + +A + GI HVDA G E F +EG S S + HK
Sbjct: 253 GVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHK 312
Query: 319 WFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRR-FRSLKL 377
+ + + + P L ++ Y SR S
Sbjct: 313 YGYGAKGTSVILYRRPDLLHYQYFIAADWPGG---------LYFSPTFAGSRPGALSATA 363
Query: 378 WFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSPSPV---- 433
W + + G R + A + V +I+ + V+ +
Sbjct: 364 WAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGD---PLWVIAVASDELNIYQ 420
Query: 434 LMDKLKTK 441
+M+++ +
Sbjct: 421 VMEEMAGR 428
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl
phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Length = 497
Score = 154 bits (391), Expect = 2e-41
Identities = 64/391 (16%), Positives = 131/391 (33%), Gaps = 47/391 (12%)
Query: 67 PNNPESMETILQDVQQ-HIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNW 125
P+N + +++++ + + + T W+ G L + + N
Sbjct: 39 PSNGIPQDDVIEELNKLNDLIPHTQWKEGKVSGAVYHGGDDLIHLQTIAYEKY--CVANQ 96
Query: 126 I---SSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVL 182
+ PA ++E+ V+ + +M P G G T E++L +A+ L
Sbjct: 97 LHPDVFPAVRKMESEVVSMVLRMFNAPSD----TGCGTTTSGGT-ESLLLACLSAKMYAL 151
Query: 183 NKIGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQIN 242
+ G I++ + H KAA G+ + R ++ ++ Y + + IN
Sbjct: 152 HHRG---ITEPEIIAPVTAHAGFDKAAYYFGMKL---RHVELDPTT-YQVDLGKVKKFIN 204
Query: 243 SDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAG------SACIC 296
+ + L + D ++ L +A+++ + +HVD+
Sbjct: 205 KN------TVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGY 258
Query: 297 PEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESM 356
V G S S + HK+ FA + ++ + NP +
Sbjct: 259 KNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTG------- 311
Query: 357 QVVDYKDWQITL--SRR-FRSLKLWFVIRNYGVANLRHFLRSHVNMAK-LFERLVSGDKR 412
TL SR + W + N G + V A + +
Sbjct: 312 ----GLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPD 367
Query: 413 FEIVFPCHFAVVCFRVSPSPV--LMDKLKTK 441
+I+ ++V+ F + L D+L K
Sbjct: 368 LDIMGNPRYSVISFSSKTLNIHELSDRLSKK 398
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 142 bits (359), Expect = 2e-37
Identities = 47/351 (13%), Positives = 104/351 (29%), Gaps = 51/351 (14%)
Query: 67 PNNPESMETILQDVQQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFN--IVGFN 124
P N E I ++ + P + E LSSGF I
Sbjct: 59 PENGIDDEKIKLFLKFLSMMDTDKD--PKSVRIGEREARTYSKIHEELSSGFCHGIGRSG 116
Query: 125 WIS-----SPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARD 179
+ + A+ + + L K +T +I L+AAR
Sbjct: 117 NLVDPQPKASGASIMYALTNKILESFFKQLGLN----VHAIATPISTGMSISLCLSAARK 172
Query: 180 RVLNKIGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMA 239
+ + + V +H + KA VG++++ + + + +
Sbjct: 173 KYGSNV---------VIYPYASHKSPIKAVSFVGMNMRLVETVLDGDR--VYVPVEDIEN 221
Query: 240 QINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEF 299
I ++E+G P + +T+ D + + + + + I ++ AY A +
Sbjct: 222 AIKKEIELGNRPC-VLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAY---AIQNNYY 277
Query: 300 RHFIDGV--EGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQ 357
+ D+ ++ K + ++ D +
Sbjct: 278 LEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEI----------------- 320
Query: 358 VVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVS 408
+ S + + + G N +++ N KL + L++
Sbjct: 321 ---SLSYPGRASAT-PVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLN 367
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 134 bits (339), Expect = 6e-35
Identities = 61/387 (15%), Positives = 130/387 (33%), Gaps = 46/387 (11%)
Query: 67 PNNPESMETILQDVQQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWI 126
S + IL++++++ ++ N F S+ + +++ +
Sbjct: 6 QEKGVSEKEILEELKKYRSLD-LKYEDGNIFGSMCSN--VLPITRKIVDIFLETNLGDPG 62
Query: 127 SSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNK-- 184
LE + LG +L ++ +GG T EA L L ++ K
Sbjct: 63 LFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGG------T-EANLMALRCIKNIWREKRR 115
Query: 185 IGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSD 244
G + H + +K +++ ++ + Y + + +
Sbjct: 116 KGLSKNEHPKIIVPITAHFSFEKGREMMDLEY---IYAPIKED--YTIDEKFVKDAVEDY 170
Query: 245 VEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICP--EFRHF 302
+ GTT + +D ++ L +AK+ I++HVDAA+ G + P + ++
Sbjct: 171 -----DVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGL--VIPFLDDKYK 223
Query: 303 IDGVE-------GADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATES 355
GV G DS +++ HK + + KD L + YL +
Sbjct: 224 KKGVNYKFDFSLGVDSITIDPHKMGHCPIPSGGILFKDI-GYKRYLDVDAPYLTETRQAT 282
Query: 356 MQVVDYKDWQITLSR-RFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFE 414
I +R F + V+R G R + + + + +
Sbjct: 283 ----------ILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKENNFKP 332
Query: 415 IVFPCHFAVVCFRVSPSPVLMDKLKTK 441
++ P +V + KL+ +
Sbjct: 333 VIEP-ILNIVAIEDEDYKEVCKKLRDR 358
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase,
pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis
thaliana}
Length = 502
Score = 130 bits (329), Expect = 4e-33
Identities = 65/404 (16%), Positives = 137/404 (33%), Gaps = 46/404 (11%)
Query: 57 YLQKVLPESA-PNNPESMETILQDVQQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLS 115
Y++ LP P N E Q + ++ + F + +++
Sbjct: 22 YVRTSLPRFKMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTW----MEPECDKLIM 77
Query: 116 SGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLT 175
S N + P TEL+N ++ + + P + G G + + EAI+
Sbjct: 78 SSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSS--EAIMLAGL 135
Query: 176 AARDRVLNKIGRE--NISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLS 233
A + + NK E + K + +K A+ +++ + +K ++ Y +
Sbjct: 136 AFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVEL---KEVKLSEGY-YVMD 191
Query: 234 PDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFG------IWVHVDA 287
P + ++ + + + A +G+T + +K L D+ + +HVDA
Sbjct: 192 PQQAVDMVDEN------TICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDA 245
Query: 288 AYAGSACICPEFRHFID-GVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPE 346
A G D + S +++ HK+ + ++ L L +
Sbjct: 246 ASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHIN 305
Query: 347 YLKNKATESMQVVDYKDWQITL--SRR-FRSLKLWFVIRNYGVANLRHFLRSHVNMAKLF 403
YL TL S+ + + ++ + G R+ + + +
Sbjct: 306 YLG-----------ADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVL 354
Query: 404 ERLVSGDKRFEIVF-PCHFAVVCFRVSPSPV-----LMDKLKTK 441
+ +RF IV +V F + S + D L+
Sbjct: 355 REGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRY 398
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14,
autoinhibition, substituted aldamine, lyase; HET: PLP;
1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A*
1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Length = 452
Score = 107 bits (268), Expect = 3e-25
Identities = 55/344 (15%), Positives = 108/344 (31%), Gaps = 51/344 (14%)
Query: 129 PAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNK---I 185
P + ++ ++ + + P G I + EA + A + R +
Sbjct: 77 PQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSS--EACMLGGMAMKWRWRKRMEAA 134
Query: 186 GRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDV 245
G+ +V G K A+ +++ R I + P ++ + +
Sbjct: 135 GKPTDKPNLVCGP--VQICWHKFARYWDVEL---REIPMRPGQ-LFMDPKRMIEACDEN- 187
Query: 246 EVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQF------GIWVHVDAAYAGSACICPEF 299
+ + T G T + +PL D +F I +H+DAA G
Sbjct: 188 -----TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAP 242
Query: 300 RHFID-GVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQV 358
D + S S + HK+ A L C + +D AL L N +YL
Sbjct: 243 DIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLG--------- 293
Query: 359 VDYKDWQITL--SRR-FRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEI 415
+ + SR + + ++ G + +A ++ +E
Sbjct: 294 --GQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEF 351
Query: 416 VFPCHFA----VVCFRVSPSP-------VLMDKLKTK--YVNCL 446
+ VCF++ L ++L+ + V
Sbjct: 352 ICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAF 395
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.2 bits (119), Expect = 1e-06
Identities = 84/551 (15%), Positives = 146/551 (26%), Gaps = 195/551 (35%)
Query: 31 HMIIDFIADYYKNVEKYPVRSQVEPGYLQKVLPESAPNN-PESMETILQDVQ-QHIVPGI 88
HM D+ +Y + + + + + + ++IL + HI+
Sbjct: 6 HM------DFETGEHQYQYK-DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII--- 55
Query: 89 THWQSPN-------YFAYFPSSGS--IAGFLGEMLSSGFNIVGFNWISSPAATE------ 133
S + F S + F+ E+L + ++ SP TE
Sbjct: 56 ---MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK-----FLMSPIKTEQRQPSM 107
Query: 134 -----------LENIV-------------MDWLGQML-KL-PKSFLF-SGNGGGVIQGTT 166
L N L Q L +L P + G G G T
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS---GKT 164
Query: 167 CEAILCTLTAARD-RVLNK---------IGRENISKLIV-------YGSDQTHCALQKAA 209
+ L +V K + N + ++ Y D + +
Sbjct: 165 W---V-ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 210 QIVGIDVKNFRAIKTT--KSSSYGLSPDSLMAQINSDV-EVGLIPLFL--CATIGTTAIT 264
+ + + + +A KS Y + L+ + +V F C + TT
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPY---ENCLL--VLLNVQNAKAWNAFNLSCKILLTTRFK 275
Query: 265 AVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATL 324
V D A + H + + SL
Sbjct: 276 QV------------------TDFLSAATTTH-ISLDHHSMTLTPDEVKSL------LLK- 309
Query: 325 DCCCLWVKD---PRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVI 381
L + PR L+TNP L S+ +D T W
Sbjct: 310 ---YLDCRPQDLPR---EVLTTNPRRL------SIIAESIRDGLATWDN-------W--- 347
Query: 382 RNYGVANLRHFLRSHVN------MAKLFERLVSGDKRFEIVFPCHFAVVCFRVSPSPVLM 435
++ L + S +N K+F+RL VFP + P+ +L
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS--------VFPPSAHI------PTILL- 392
Query: 436 DKLKTKYVNCLL------SEEEQI-NEF-NRELLESINASGKAYMTHAVLGGIYAIRFAT 487
L+ S+ + N+ L+E I +I
Sbjct: 393 ---------SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS--------IPSIYLEL 435
Query: 488 GATLTEKR--H 496
L + H
Sbjct: 436 KVKLENEYALH 446
Score = 37.1 bits (85), Expect = 0.016
Identities = 33/234 (14%), Positives = 70/234 (29%), Gaps = 69/234 (29%)
Query: 335 RALVSSLSTNPEYLKNK-ATE----SMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANL 389
+ + L N ++L + TE SM Y + + L + + V R L
Sbjct: 81 KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140
Query: 390 RHFL---RSHVN-----MA---K--LFERLVSGDKRFEIVFPCHFAV------------- 423
R L R N + K + + + + F +
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCL-SYKVQCKMD--FKIFWLNLKNCNSPET 197
Query: 424 -------VCFRVSPS-----------PVLMDKLKTK---------YVNCLL-----SEEE 451
+ +++ P+ + + ++ + Y NCLL +
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257
Query: 452 QINEFN---RELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWT 502
N FN + LL + +++ A I + T E + +++ +
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Score = 34.1 bits (77), Expect = 0.12
Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 45/125 (36%)
Query: 2 GSLTSDPELKYNSGSFTNP-----------LDSEEFRRQ------------GHMIIDFIA 38
+ T+ L ++S + T ++ R+ I D +A
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 39 --DYYKNVEKYPVRS-------QVEPGYLQK------VLPESAPNNPESMETIL------ 77
D +K+V + + +EP +K V P SA + P + +++
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA-HIPTILLSLIWFDVIK 401
Query: 78 QDVQQ 82
DV
Sbjct: 402 SDVMV 406
Score = 28.7 bits (63), Expect = 5.8
Identities = 22/187 (11%), Positives = 50/187 (26%), Gaps = 60/187 (32%)
Query: 16 SFTNPLDSEEFRRQGHMIIDFIADYYKNVEKYPVRSQVEPGYLQKVLPESAPNNPESMET 75
S N L+ E+R+ + + +P + + L + + ++ +
Sbjct: 361 SSLNVLEPAEYRK-----------MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 76 ILQD---VQQHIVPG-------------------------ITHWQSP-----NYFAYFPS 102
L V++ + H+ P +
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469
Query: 103 SGSIAGFLG------EM--LSSGFNIV--GFNWIS-----SPAATELENIVMDWLGQMLK 147
+G E + F +V F ++ A +++ L Q LK
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ-LK 528
Query: 148 LPKSFLF 154
K ++
Sbjct: 529 FYKPYIC 535
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order
transition, phosphate-loop, pyridoxal phospha
selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A
{Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Length = 450
Score = 47.3 bits (112), Expect = 7e-06
Identities = 29/205 (14%), Positives = 62/205 (30%), Gaps = 19/205 (9%)
Query: 134 LENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKL 193
+ N ++ + ++ + V+ T ++ R + R +
Sbjct: 99 ITNSLVLNVIKLAGVHSV-----ASCFVVPMATGMSLTLCFLTLRHK------RPKAKYI 147
Query: 194 IVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIP-L 252
I + K+ G + + + ++ A+I E+G L
Sbjct: 148 IW--PRIDQKSCFKSMVTAGFEPVVIENV--LEGDELRTDLKAVEAKIQ---ELGPEHIL 200
Query: 253 FLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSF 312
L +T A D L+ L + + I V+ AY + C V D+F
Sbjct: 201 CLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAF 260
Query: 313 SLNAHKWFFATLDCCCLWVKDPRAL 337
+ K F + + + +
Sbjct: 261 VQSLDKNFMVPVGGAIIAGFNEPFI 285
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine,
sepsecs, protein-RNA complex, alternative splicing,
cytoplasm, protein biosynthesis, pyridoxal phosphate,
selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Length = 501
Score = 47.0 bits (111), Expect = 1e-05
Identities = 27/206 (13%), Positives = 63/206 (30%), Gaps = 19/206 (9%)
Query: 133 ELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISK 192
++ N ++ + ++ + V+ T ++ R + R
Sbjct: 116 KITNSLVLDIIKLAGVHTV-----ANCFVVPMATGMSLTLCFLTLRHK------RPKAKY 164
Query: 193 LIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIP- 251
+I + K+ G + + + ++ A++ E+G
Sbjct: 165 IIW--PRIDQKSCFKSMITAGFEPVVIENV--LEGDELRTDLKAVEAKVQ---ELGPDCI 217
Query: 252 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADS 311
L + +T A D L+ L + + I V+ AY + C V D+
Sbjct: 218 LCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDA 277
Query: 312 FSLNAHKWFFATLDCCCLWVKDPRAL 337
F + K F + + + +
Sbjct: 278 FVQSLDKNFMVPVGGAIIAGFNDSFI 303
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 43.2 bits (101), Expect = 2e-04
Identities = 35/212 (16%), Positives = 65/212 (30%), Gaps = 41/212 (19%)
Query: 128 SPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAIL-CTLTAARDRVLNKIG 186
S +L++ + +P QG E IL L + +
Sbjct: 75 SRNYYDLKDKAKELFNYDYIIP-----------AHQGRGAENILFPVLLKYKQKEGKAKN 123
Query: 187 RENISKLIVYGSDQTHCALQKA-AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDV 245
IS + D T ++ + + I + +T L I
Sbjct: 124 PVFIS---NFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHG 180
Query: 246 EVGLIPLFLCATIGTTAITAVDP--LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFI 303
++ + T + V LK + ++AKQ GI+V +D+A +FI
Sbjct: 181 ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENA------YFI 234
Query: 304 DGVEG-----------------ADSFSLNAHK 318
+ AD+ +++A K
Sbjct: 235 KARDPKYKNATIKEVIFDMYKYADALTMSAKK 266
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 42.4 bits (100), Expect = 2e-04
Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 20/134 (14%)
Query: 208 AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATI----GTTAI 263
AA+ G+++ + T Y ++P++ I + G + L L G
Sbjct: 109 AAERAGLNIA---LVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGN--- 162
Query: 264 TAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE-GADSFSLNAHKWFFA 322
+ +K + V ++ + + V+ AYA + E GAD + HK A
Sbjct: 163 --LPDVKKIAKVCSEYDVPLLVNGAYA-----IGRMP--VSLKEIGADFIVGSGHKSMAA 213
Query: 323 TLDCCCLWVKDPRA 336
+ + +K+ A
Sbjct: 214 SGPIGVMGMKEEWA 227
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 7e-04
Identities = 74/442 (16%), Positives = 126/442 (28%), Gaps = 136/442 (30%)
Query: 102 SSGSI---------AGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSF 152
S GS+ + F+ L FN P TE D +L F
Sbjct: 12 SHGSLEHVLLVPTASFFIASQLQEQFNK------ILPEPTE-GFAADDEPTTPAELVGKF 64
Query: 153 LFSGNGGGVI--------QGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCA 204
L G + G + + LT + L +I L +
Sbjct: 65 L------GYVSSLVEPSKVGQFDQVLNLCLTEFENCYL---EGNDIHALAAKLLQENDTT 115
Query: 205 LQKAAQIVGIDVKN-FRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLF---------- 253
L K +++ KN A K S +L + L+ +F
Sbjct: 116 LVKTKELI----KNYITARIMAKRPFDKKSNSALFRAVGEG-NAQLVAIFGGQGNTDDYF 170
Query: 254 -----LCAT----IGTTAITAVDPLKPLC----DVAKQF--GI----WVHV-----DAAY 289
L T +G + + L L D K F G+ W+ D Y
Sbjct: 171 EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY 230
Query: 290 AGSACI-CPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYL 348
S I CP I G AH + T + R+ + + + + L
Sbjct: 231 LLSIPISCP----LI----GVIQL---AH--YVVTAKLLGFTPGELRSYLKGATGHSQGL 277
Query: 349 KNKATESMQVVDYKDWQ--ITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERL 406
+ W+ R+ + + F I GV + + + + L + L
Sbjct: 278 VTAVAIAET----DSWESFFVSVRKA--ITVLFFI---GVRCYEAYPNTSLPPSILEDSL 328
Query: 407 VSGDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSE--EEQINEFNRELLES- 463
+ + PSP+L ++ L E ++ +N+ N L
Sbjct: 329 ENNEG-----------------VPSPMLS-------ISNLTQEQVQDYVNKTNSHLPAGK 364
Query: 464 ------INASGKAYMTHAVLGG 479
+N + + V+ G
Sbjct: 365 QVEISLVNGA-----KNLVVSG 381
Score = 37.7 bits (87), Expect = 0.010
Identities = 42/272 (15%), Positives = 79/272 (29%), Gaps = 78/272 (28%)
Query: 22 DS-EEFRRQGHMIID---FIADYYKNVEKYPVRSQVEPGYLQKVLPESAPNN---PESME 74
DS E F I FI + E YP S + P L+ +S NN P M
Sbjct: 287 DSWESFFVSVRKAITVLFFIG--VRCYEAYPNTS-LPPSILE----DSLENNEGVPSPML 339
Query: 75 TI----LQDVQQHI------VPGITHWQ-----SPNYF--AYFPSS--GSIAGFLGEMLS 115
+I + VQ ++ +P + + P S G
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399
Query: 116 SGFN-------------IVGFNWISSP-------AATE-----LENIVMDWLGQMLKLPK 150
SG + F ++SP A++ L + + + +++P
Sbjct: 400 SGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP- 458
Query: 151 SFLFSGNGGGVIQGTT-------CEAILCTLTAARDRVL-NKIGRENISKLIVYGSDQTH 202
++ G ++ + + I+ R V + + ++ +G
Sbjct: 459 --VYDTFDGSDLRVLSGSISERIVDCII------RLPVKWETTTQFKATHILDFGPGGAS 510
Query: 203 CALQKAAQIV---GIDVKNFRAIKTTKSSSYG 231
+ G+ V + YG
Sbjct: 511 GLGVLTHRNKDGTGVRVIVAGTLDINPDDDYG 542
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium
tuberculosis}
Length = 406
Score = 36.0 bits (84), Expect = 0.025
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 17/67 (25%)
Query: 257 TIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHF-IDGVE--GADSFS 313
T+G V L+ + + G V VD + A + +D + AD +
Sbjct: 177 TLGG-----VTDLRAMTKLVHDVGALVVVDHSAAAP--------YRLLD-IRETDADVVT 222
Query: 314 LNAHKWF 320
+NAH W
Sbjct: 223 VNAHAWG 229
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.039
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 8/34 (23%)
Query: 45 EKYPVRSQVEPGYLQKVLPESAP----NNPESME 74
EK ++ +++ L+ +SAP +ME
Sbjct: 18 EKQALK-KLQ-ASLKLYADDSAPALAIK--ATME 47
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism;
HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2
PDB: 2c44_A 2v1p_A* 2v0y_A*
Length = 467
Score = 34.6 bits (79), Expect = 0.067
Identities = 30/210 (14%), Positives = 60/210 (28%), Gaps = 27/210 (12%)
Query: 128 SPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILC-TLTAARDRVLNKIG 186
S + L V + G +P QG E I L R++
Sbjct: 73 SRSYYALAESVKNIFGYQYTIP-----------THQGRGAEQIYIPVLIKKREQEKGLDR 121
Query: 187 RENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSD-- 244
+ ++ + + + + +K + L I
Sbjct: 122 SKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGP 181
Query: 245 VEVGLIPLFL-CATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFI 303
V I + + G ++ + LK + +AK++ I V +D+A + R
Sbjct: 182 NNVPYIVATITSNSAGGQPVS-LANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAE 240
Query: 304 DG-----------VEGADSFSLNAHKWFFA 322
+ AD +++A K
Sbjct: 241 YKDWTIEQITRETYKYADMLAMSAKKDAMV 270
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas
putida} SCOP: c.67.1.1
Length = 356
Score = 32.9 bits (76), Expect = 0.25
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 7/89 (7%)
Query: 232 LSPDSLMAQINSDVE----VGLIPLFL-CATIGTTAITAVDPLKPLCDVAKQFGIWVHVD 286
L L + V + + AT + T +D ++ + DV K + +H+D
Sbjct: 121 LDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYT-LDEIEAIGDVCKSSSLGLHMD 179
Query: 287 AAYAGSACICPEFR-HFIDGVEGADSFSL 314
+ +A + + G D+ S
Sbjct: 180 GSRFANALVSLGCSPAEMTWKAGVDALSF 208
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme,
pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter
freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A
2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Length = 456
Score = 32.4 bits (73), Expect = 0.33
Identities = 29/214 (13%), Positives = 56/214 (26%), Gaps = 39/214 (18%)
Query: 125 WISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNK 184
+ S LE V + G +P QG E +L ++ K
Sbjct: 71 YAGSENFYHLERTVQELFGFKHIVP-----------THQGRGAENLLS-------QLAIK 112
Query: 185 IGRENISKLIVYGSDQTHCALQKA-AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINS 243
G+ T +K A V I + + L I+
Sbjct: 113 PGQYVAG---NMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLID- 168
Query: 244 DVEVGLIPLFL----CATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEF 299
+ I G ++ + ++ + ++ + GI V DA +
Sbjct: 169 EKGAENIAYICLAVTVNLAGGQPVS-MANMRAVRELTEAHGIKVFYDATRCVENAYFIKE 227
Query: 300 RHF-----------IDGVEGADSFSLNAHKWFFA 322
+ + AD +++ K
Sbjct: 228 QEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLV 261
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence,
acyltransferase, aminotransferase, pyridoxal PHO
transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB:
3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Length = 409
Score = 32.2 bits (74), Expect = 0.40
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 268 PLKPLCDVAKQFGIWVHVDAAYA 290
PL L +++K+FG + VD +++
Sbjct: 204 PLAELVNISKEFGCALLVDESHS 226
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism,
transferase; HET: PLP; 2.30A {Coxiella burnetii}
Length = 399
Score = 31.8 bits (73), Expect = 0.51
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 268 PLKPLCDVAKQFGIWVHVDAAYA 290
LK +CD+A ++ V VD ++A
Sbjct: 193 DLKSICDLADKYNALVMVDDSHA 215
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate
COA ligase, pyridoxal phosphate, COEN transferase,
structural genomics; HET: PLP; 2.00A {Escherichia coli}
SCOP: c.67.1.4
Length = 401
Score = 31.8 bits (73), Expect = 0.54
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 268 PLKPLCDVAKQFGIWVHVDAAYA 290
LK +CD+A ++ V VD ++A
Sbjct: 195 NLKGVCDLADKYDALVMVDDSHA 217
>1svv_A Threonine aldolase; structural genomics, structural genomics of
pathogenic proto SGPP, protein structure initiative,
PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Length = 359
Score = 31.5 bits (72), Expect = 0.59
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 269 LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRH-FIDGVEGADSFSL 314
L+ + K+ G+++ +D A SA P D D F +
Sbjct: 166 LEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYI 212
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas
paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A*
2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Length = 427
Score = 31.4 bits (72), Expect = 0.66
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 268 PLKPLCDVAKQFGIWVHVDAAYA 290
PLK + VAK+ G V VD A++
Sbjct: 212 PLKEMVAVAKKHGAMVLVDEAHS 234
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme
biosynthesis, pyridoxal PHOS dependent, transferase,
acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus}
SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Length = 401
Score = 31.4 bits (72), Expect = 0.74
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 268 PLKPLCDVAKQFGIWVHVDAAYA 290
P+K +CD+A++FG ++D +A
Sbjct: 196 PIKEICDIAEEFGALTYIDEVHA 218
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type
I, acyltransferase, PY phosphate; HET: PLP; 2.30A
{Sphingobacterium multivorum}
Length = 398
Score = 31.0 bits (71), Expect = 0.83
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 268 PLKPLCDVAKQFGIWVHVDAAYA 290
L L +A +F V VD A++
Sbjct: 191 NLPELTSIANEFDAAVMVDDAHS 213
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA
synthase, biotin biosynthesis, 8-AMIN oxonanoate
synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB:
2g6w_A* 1dje_A* 1dj9_A*
Length = 384
Score = 31.0 bits (71), Expect = 1.00
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 268 PLKPLCDVAKQFGIWVHVDAAYA 290
PL + V +Q W+ VD A+
Sbjct: 186 PLAEIQQVTQQHNGWLMVDDAHG 208
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase;
PLP, structural genomics, NPPSFA; HET: PLP; 1.90A
{Pyrococcus horikoshii}
Length = 386
Score = 30.7 bits (70), Expect = 1.4
Identities = 29/166 (17%), Positives = 57/166 (34%), Gaps = 36/166 (21%)
Query: 128 SPAATELENIVMDWLGQMLKLPKS--FLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKI 185
S ++ ++ L + L++ K L +G G++ EA + + +VL
Sbjct: 48 SKEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIM-----EASIRNGVSKGGKVLV-- 100
Query: 186 GRENISKLIVYG--SDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYG--LSPDSLMAQI 241
+ G + ++ + G G + P+ L +
Sbjct: 101 --------TIIGAFGKR----YKEVVESNGRKAVVLEY-------EPGKAVKPEDLDDAL 141
Query: 242 NSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDA 287
+ +V + T T+ ++PL L VAK+ V VDA
Sbjct: 142 RKNPDVEAV----TITYNETSTGVLNPLPELAKVAKEHDKLVFVDA 183
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal
5' phosphat external aldimine, chloroplast, pyridox
phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB:
3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A
3eia_A*
Length = 432
Score = 30.3 bits (69), Expect = 1.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 260 TTAITAVDPLKPLCDVAKQFGIWVHVDAAYA 290
T A + L L + AK+ G + D+AYA
Sbjct: 211 TGAAATREQLTQLVEFAKKNGSIIVYDSAYA 241
>2ekg_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
flavoenzyme, prodh, beta-alpha-barrel inhibitor,
inactivation, flavocyanine; HET: LYX FAD; 1.90A {Thermus
thermophilus} PDB: 2g37_A*
Length = 327
Score = 30.0 bits (68), Expect = 2.1
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 265 AVDPLKPLCDVAKQFGIWVHVDA 287
A+ L+ + A+ G++V +D
Sbjct: 132 ALALLREVLREAEPRGVFVRLDM 154
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent
aminotransferase; 2.05A {Chlamydia trachomatis} PDB:
3asb_A*
Length = 400
Score = 29.1 bits (66), Expect = 3.4
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 260 TTAITAVDPLKPLCDVAKQFGIWVHVDAAYA 290
T + D L+ + A + I + DAAY+
Sbjct: 176 TGTVLNKDQLRAIVHYAIEHEILILFDAAYS 206
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston
bacterial structural genomics initiative, BSGI,
transferase; HET: PLP; 2.05A {Escherichia coli} PDB:
3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Length = 423
Score = 29.0 bits (66), Expect = 4.3
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 15/63 (23%)
Query: 258 IGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE--GADSFSLN 315
IG V + + ++ + GI HVDA + P ID + D S +
Sbjct: 176 IGV-----VQDIAAIGEMCRARGIIYHVDATQS--VGKLP-----ID-LSQLKVDLMSFS 222
Query: 316 AHK 318
HK
Sbjct: 223 GHK 225
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5'
phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A
{Chlamydomonas reinhardtii}
Length = 449
Score = 28.8 bits (65), Expect = 4.4
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 260 TTAITAVDPLKPLCDVAKQFGIWVHVDAAYA 290
T A L L + A++ G + DAAYA
Sbjct: 222 TGAAATRAQLTELVNFARKNGSILVYDAAYA 252
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent
enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A
{Thermus thermophilus}
Length = 376
Score = 28.7 bits (65), Expect = 4.8
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 260 TTAITAVDPLKPLCDVAKQFGIWVHVDAAYA 290
T A+ + +A++ G+W+ D Y
Sbjct: 171 TGAVADWGYFEEALGLARKHGLWLIHDNPYV 201
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas
aeruginosa}
Length = 412
Score = 28.3 bits (64), Expect = 6.1
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 260 TTAITAVDPLKPLCDVAKQFGIWVHVDAAYA 290
T +D + + +AKQ+ + V D AYA
Sbjct: 185 TAQCVELDFFERVVALAKQYDVMVVHDLAYA 215
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A
{Staphylococcus aureus}
Length = 404
Score = 27.9 bits (63), Expect = 8.1
Identities = 5/31 (16%), Positives = 8/31 (25%)
Query: 260 TTAITAVDPLKPLCDVAKQFGIWVHVDAAYA 290
T + + K + D AY
Sbjct: 194 TGSTATKEVFDEAIAKFKGTDTKIVHDFAYG 224
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI,
MCSG, protein structure initiative; 2.00A {Clostridium
acetobutylicum}
Length = 361
Score = 27.9 bits (63), Expect = 9.1
Identities = 9/89 (10%), Positives = 32/89 (35%), Gaps = 17/89 (19%)
Query: 206 QKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCA----TIGTT 261
+ A+ G+ V + + + ++++I+ +V + + G
Sbjct: 112 EINAKKHGVSVVFSYL-----DENMCIDYEDIISKID---DVDSV--IIGNPNNPN-GG- 159
Query: 262 AITAVDPLKPLCDVAKQFGIWVHVDAAYA 290
+ + + +A++ + +D A+
Sbjct: 160 -LINKEKFIHVLKLAEEKKKTIIIDEAFI 187
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase,
transferase-transferase inhibitor; HET: SUC 3CX FPP 778;
2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B*
3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Length = 520
Score = 28.0 bits (61), Expect = 9.9
Identities = 22/128 (17%), Positives = 47/128 (36%), Gaps = 13/128 (10%)
Query: 74 ETILQDVQQHIVPGITHWQSPN-YFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAAT 132
+ Q + +V + H+ SP F P++ I L +S ++ SS
Sbjct: 104 VALDQGTKDRVVSTLLHFLSPKGGFGGGPANSQIPHLLP-TYASVCSLAIAGNDSSTGGW 162
Query: 133 ELENI----VMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRE 188
+ + ++ + + F+ G ++GT C ++ TL L+ I E
Sbjct: 163 KDLAAARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTYCLLVVATL-------LDIITPE 215
Query: 189 NISKLIVY 196
+ + +
Sbjct: 216 LLHNVDKF 223
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.415
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,018,840
Number of extensions: 485073
Number of successful extensions: 1091
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1024
Number of HSP's successfully gapped: 55
Length of query: 517
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 419
Effective length of database: 3,965,535
Effective search space: 1661559165
Effective search space used: 1661559165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.6 bits)