RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 010125
(517 letters)
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 476
Score = 409 bits (1052), Expect = e-139
Identities = 196/499 (39%), Positives = 287/499 (57%), Gaps = 37/499 (7%)
Query: 21 LDSEEFRRQGHMIIDFIADYYKNVEKYPVRSQVEPGYLQKVLPESAPNNPESMETILQDV 80
+++ +FRR+G ++D++ADY + +E V V+PGYL+ ++P +AP P++ E ILQDV
Sbjct: 1 MNASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDV 60
Query: 81 QQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMD 140
++ I+PG+THW SP +FAYFP++ S L +ML +GF+W +SPA TELE ++MD
Sbjct: 61 EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMD 120
Query: 141 WLGQMLKLPKSFLFSGNG--GGVIQGTTCEAILCTLTAARDRVLNKIGREN--------I 190
WLG+ML+LP++FL G GGVIQG+ EA L L AAR +V+ ++ + +
Sbjct: 121 WLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVL 180
Query: 191 SKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLI 250
KL+ Y SDQ H ++++A I G+ +K + + +L + D GLI
Sbjct: 181 EKLVAYASDQAHSSVERAGLIGGVKLKAIP-----SDGKFAMRASALQEALERDKAAGLI 235
Query: 251 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGAD 310
P F+ AT+GTT+ + D L + + + IW+HVDAAYAGSA ICPEFRH ++GVE AD
Sbjct: 236 PFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFAD 295
Query: 311 SFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSR 370
SF+ N HKW DC +WVK L + +P YLK+ S + DY+ WQ+ L R
Sbjct: 296 SFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGR 355
Query: 371 RFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSP 430
RFRSLK+WFV R YGV L+ ++R HV ++ FE V D RFE+ +VCFR+
Sbjct: 356 RFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKG 415
Query: 431 SPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGAT 490
S + N LLE IN++ K ++ L G + +RFA +
Sbjct: 416 S----------------------DGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSR 453
Query: 491 LTEKRHVVVAWTVVQQHLE 509
E HV +AW ++
Sbjct: 454 KVESGHVRLAWEHIRGLAA 472
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
{Escherichia coli [TaxId: 562]}
Length = 450
Score = 168 bits (426), Expect = 3e-47
Identities = 53/409 (12%), Positives = 119/409 (29%), Gaps = 43/409 (10%)
Query: 37 IADYYKNVEKYPVRSQ-VEPGYLQKVLPESAPNNPESMETILQDVQQHIVPGITHWQSPN 95
+ D + ++ + K P + + + I ++ + G
Sbjct: 4 VTDLRSELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDEL---YLDGNARQNLAT 60
Query: 96 YFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFS 155
+ + + +++ N + P + ++ ++ + + P +
Sbjct: 61 FCQTWDDE-----NVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAP--KN 113
Query: 156 GNGGGVIQGTTCEAILCTLTAARDRVLNKI-GRENISKLIVYGSDQTHCALQKAAQIVGI 214
G G + EA + A + R ++ + K A+ +
Sbjct: 114 GQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDV 173
Query: 215 DVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCD 274
+++ + P ++ + + + + T G T + +PL D
Sbjct: 174 ELREIPMRPGQ----LFMDPKRMIEACDEN------TIGVVPTFGVTYTGNYEFPQPLHD 223
Query: 275 V------AKQFGIWVHVDAAYAGS-ACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCC 327
I +H+DAA G A + + S S + HK+ A L C
Sbjct: 224 ALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCG 283
Query: 328 CLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNY-GV 386
+ +D AL L N +YL + I SR + + G
Sbjct: 284 WVIWRDEEALPQELVFNVDYLG---------GQIGTFAINFSRPAGQVIAQYYEFLRLGR 334
Query: 387 ANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFA----VVCFRVSPS 431
+ +A ++ +E + VCF++
Sbjct: 335 EGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDG 383
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 116 bits (290), Expect = 9e-29
Identities = 52/429 (12%), Positives = 130/429 (30%), Gaps = 63/429 (14%)
Query: 24 EEFRRQGHMIIDFIADYYKNVEKYPV--RSQVEPGYLQKVLPESAPNNPESMETILQDVQ 81
+ ++G ++++ ++V + + ++ ++ L + + + ++ +
Sbjct: 12 KNMEKRGELVLNEYLKEIEDVFNHRKIPENGIDDEKIKLFLKFLSMMDTDKDPKSVRIGE 71
Query: 82 ---QHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIV 138
+ S S G L + + L N +
Sbjct: 72 REARTYSKIHEELSSGFCHGIGRS-----GNLVDPQPKASG--------ASIMYALTNKI 118
Query: 139 MDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGS 198
++ + L L + + G +I L+AAR + +V
Sbjct: 119 LESFFKQLGLNVHAIATPISTG-------MSISLCLSAARKK---------YGSNVVIYP 162
Query: 199 DQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATI 258
+H + KA VG++++ + + + + I ++E+G P + +T+
Sbjct: 163 YASHKSPIKAVSFVGMNMRLVETVLDGDR--VYVPVEDIENAIKKEIELGNRP-CVLSTL 219
Query: 259 GTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHK 318
D + + + + + I ++ AYA E D+ ++ K
Sbjct: 220 TFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKA-FKYRVDAVVSSSDK 278
Query: 319 WFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLW 378
+ ++ D + + P + +
Sbjct: 279 NLLTPIGGGLVYSTDAEFIKEISLSYPGR---------------------ASATPVVNTL 317
Query: 379 FVIRNYGVANLRHFLRSHVNMAKLFERL---VSGDKRFEIVFPCHFAVVCFRVSPSPV-L 434
+ + G N +++ N KL + L +S + + C V+ PV +
Sbjct: 318 VSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNSDPVEI 377
Query: 435 MDKLKTKYV 443
KL V
Sbjct: 378 AAKLYNLRV 386
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 445
Score = 106 bits (264), Expect = 3e-25
Identities = 25/210 (11%), Positives = 59/210 (28%), Gaps = 17/210 (8%)
Query: 128 SPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGR 187
S ++ N ++ + ++ + V+ T ++ R +
Sbjct: 89 SSLLNKITNSLVLNVIKLAGVHSV-----ASCFVVPMATGMSLTLCFLTLRHK------- 136
Query: 188 ENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEV 247
+ + K+ G + + ++ A+I
Sbjct: 137 -RPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRT--DLKAVEAKIQELGPE 193
Query: 248 GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE 307
++ L +T A D L+ L + + I V+ AY + C V
Sbjct: 194 HIL--CLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVG 251
Query: 308 GADSFSLNAHKWFFATLDCCCLWVKDPRAL 337
D+F + K F + + + +
Sbjct: 252 RIDAFVQSLDKNFMVPVGGAIIAGFNEPFI 281
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 46.8 bits (110), Expect = 4e-06
Identities = 30/223 (13%), Positives = 61/223 (27%), Gaps = 25/223 (11%)
Query: 128 SPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAI-LCTLTAARDRVLNKIG 186
S + L V + G +P QG E I + L R++
Sbjct: 73 SRSYYALAESVKNIFGYQYTIP-----------THQGRGAEQIYIPVLIKKREQEKGLDR 121
Query: 187 RENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVE 246
+ ++ + + + + +K + L I
Sbjct: 122 SKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGP 181
Query: 247 VGLIPLFLCATIGTTAITAVDP--LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHF-- 302
+ + T + V LK + +AK++ I V +D+A + R
Sbjct: 182 NNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEY 241
Query: 303 ---------IDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRA 336
+ + AD +++A K + D
Sbjct: 242 KDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFF 284
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 45.2 bits (106), Expect = 1e-05
Identities = 30/219 (13%), Positives = 60/219 (27%), Gaps = 33/219 (15%)
Query: 128 SPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGR 187
S LE V + G K + QG E +L ++ K G+
Sbjct: 74 SENFYHLEKTVKELFGF-----KHIVP------THQGRGAENLLS-------QLAIKPGQ 115
Query: 188 ENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSD--V 245
+ + + A V I + + L I
Sbjct: 116 YVAGNMYFTTT--RFHQEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAE 173
Query: 246 EVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAA-YAGSACICPEFRHFID 304
+ I L + + ++ ++ + ++A +GI + DA +A E +
Sbjct: 174 NIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYE 233
Query: 305 GV----------EGADSFSLNAHKWFFATLDCCCLWVKD 333
V AD +++ K + +
Sbjct: 234 NVSIKDIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDE 272
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 38.0 bits (87), Expect = 0.003
Identities = 30/208 (14%), Positives = 56/208 (26%), Gaps = 19/208 (9%)
Query: 128 SPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGR 187
S +L++ + QG E IL + + K
Sbjct: 74 SRNYYDLKDKAKELFN----YDYIIPAH-------QGRGAENILFPVLLKYKQKEGKAKN 122
Query: 188 ENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEV 247
+ + H L + I + +T L I
Sbjct: 123 PVFISNFHFDTTAAHVELNGCK-AINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGAD 181
Query: 248 GLIPLFLCATIGTTAITAVDP--LKPLCDVAKQFGIWVHVDAAYAGSACI-----CPEFR 300
++ + T + V LK + ++AKQ GI+V +D+A P+++
Sbjct: 182 NIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYK 241
Query: 301 HFIDGVEGADSFSLNAHKWFFATLDCCC 328
+ D + A D
Sbjct: 242 NATIKEVIFDMYKYADALTMSAKKDPLL 269
>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 388
Score = 33.7 bits (76), Expect = 0.056
Identities = 14/95 (14%), Positives = 26/95 (27%), Gaps = 6/95 (6%)
Query: 208 AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVD 267
A + G + T + + L+ D L + +I T A+
Sbjct: 126 AVILAGGKP---VEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPT---GAVLTKK 179
Query: 268 PLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHF 302
L+ + D + + V D Y
Sbjct: 180 DLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSI 214
>d2j7ya1 a.123.1.1 (A:217-452) Estrogen receptor beta {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 236
Score = 32.4 bits (73), Expect = 0.10
Identities = 23/147 (15%), Positives = 49/147 (33%), Gaps = 18/147 (12%)
Query: 232 LSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAG 291
LSP+ L+ + + P + + + T + L +A + + + + A
Sbjct: 2 LSPEQLVLTL-----LEAEPPNVLVSRPSMPFTEASMMMSLTKLADKELVHM-IGWA--- 52
Query: 292 SACICPEFRHFIDGVEGADSFSLNAHKWFFA-TLDCCCLWVKDPRALVSSLSTNPEYLKN 350
P F D L W + + P L+ + + ++
Sbjct: 53 --KKIPGFVELSL----LDQVRLLESCWMEVLMVGLMWRSIDHPGKLI--FAPDLVLDRD 104
Query: 351 KATESMQVVDYKDWQITLSRRFRSLKL 377
+ +++ D + + RFR LKL
Sbjct: 105 EGKCVEGILEIFDMLLATTSRFRELKL 131
>d2bbva_ b.121.4.4 (A:) Alphanodavirus capsid protein {Black beetle
virus [TaxId: 12285]}
Length = 308
Score = 28.0 bits (62), Expect = 2.5
Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 21/101 (20%)
Query: 227 SSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAIT--------------AVDPLKPL 272
S + G+ P S + Q + V P+ L A T V + P
Sbjct: 115 SMNVGIYPTSNLMQFAGSITVWKCPVKLSNVQFPVATTPATSALVHTLVGLDGVLAVGP- 173
Query: 273 CDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFS 313
+ ++ F + ++ S C P+F F D +EG +
Sbjct: 174 DNFSESF-----IKGVFSQSVCNEPDFE-FSDILEGIQTLP 208
>d2hxja1 a.136.1.1 (A:3-118) Hypothetical protein NMB1681 {Neisseria
meningitidis [TaxId: 487]}
Length = 116
Score = 26.7 bits (59), Expect = 2.9
Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 344 NPEYLKNKATESMQVVDYKDWQITLSRRFRSLK------LWFVIRNYGVANLRHFLRSHV 397
+ +K ++ + D+ + + +RF+ L L + Y A + L +H
Sbjct: 11 SAVQTMSKKKQTEMIADHIYGKYDVFKRFKPLALGIDQDLIAALPQYDAALIARVLANHC 70
Query: 398 NMAKLFERLVSGDKRFEI 415
+ + L G KRF++
Sbjct: 71 RRPRYLKALARGGKRFDL 88
>d2p1ta1 a.123.1.1 (A:229-458) Retinoid-X receptor alpha (RXR-alpha)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 230
Score = 27.4 bits (60), Expect = 3.8
Identities = 21/130 (16%), Positives = 38/130 (29%), Gaps = 15/130 (11%)
Query: 250 IPLFLCATIGTTAITAVDPLKPLCDVA-KQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 308
++ A +G + DP+ +C A KQ V A P F
Sbjct: 18 TETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEW-------AKRIPHFSELPL---- 66
Query: 309 ADSFSLNAHKWF-FATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQIT 367
D L W + ++ L+T +N A + +
Sbjct: 67 DDQVILLRAGWNELLIASFSHRSIAVKDGIL--LATGLHVHRNSAHSAGVGAIFDRVLTE 124
Query: 368 LSRRFRSLKL 377
L + R +++
Sbjct: 125 LVSKMRDMQM 134
>d1nova_ b.121.4.4 (A:) Alphanodavirus capsid protein {Nodamura
virus [TaxId: 12288]}
Length = 309
Score = 27.2 bits (60), Expect = 4.3
Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 23/104 (22%)
Query: 227 SSSYGLSPDSLMAQINSDVEVGLIPL--------FLCAT-------IGTTAITAVDPLKP 271
S + G+ P S + Q ++V IPL AT T AI ++ L
Sbjct: 115 SMAAGVYPTSNLMQFAGSIQVYKIPLKQVLNSYSQTVATVPPTNLAQNTIAIDGLEALDA 174
Query: 272 LCD--VAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFS 313
L + + F ++ Y+ S C PEF F +EG S
Sbjct: 175 LPNNNYSGSF-----IEGCYSQSVCNEPEF-EFHPIMEGYASVP 212
>d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal
domain {Moorella thermoacetica [TaxId: 1525]}
Length = 149
Score = 26.3 bits (57), Expect = 5.7
Identities = 12/59 (20%), Positives = 21/59 (35%)
Query: 113 MLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAIL 171
+L + +VG I++ + ++ D +G K F G G E L
Sbjct: 51 ILDARAVLVGSPTINNDILPVVSPLLDDLVGLRPKNKVGLAFGAYGWGGGAQKILEERL 109
>g1f8v.1 b.121.4.4 (A:,D:) Alphanodavirus capsid protein {Pariacoto
virus [TaxId: 103782]}
Length = 395
Score = 26.9 bits (59), Expect = 6.0
Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 26/102 (25%)
Query: 227 SSSYGLSPDSLMAQINSDVEVGLIPLFLCATI--GTTAIT------------------AV 266
S + GL P S M Q + V+V + L L + TAIT +
Sbjct: 157 SMACGLYPTSNMMQFSGSVQVWRVDLNLSEAVNPAVTAITPAPGVFANFVDKRINGLRGI 216
Query: 267 DPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 308
PL P + + F +D AY + +F + D V
Sbjct: 217 RPLAPRDNYSGNF-----IDGAYTFAFDKSTDFE-WCDFVRS 252
>d1wyza1 c.90.1.1 (A:2-234) Putative methytransferase BT4190
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 233
Score = 26.8 bits (58), Expect = 6.6
Identities = 9/160 (5%), Positives = 33/160 (20%)
Query: 166 TCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTT 225
+ + R L K+ RE + + H + + + + +
Sbjct: 30 GIRHFIVEDVRSARRFLKKVDREIDIDSLTFYPLNKHTSPEDISGYLKPLAGGASMGVIS 89
Query: 226 KSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHV 285
++ ++ + + + + + ++ A I
Sbjct: 90 EAGCPAVADPGADVVAIAQRQKLKVIPLVGPSSIILSVMASGFNGQSFAFHGYLPIEPGE 149
Query: 286 DAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLD 325
A + + +
Sbjct: 150 RAKKLKTLEQRVYAESQTQLFIETPYRNHKMIEDILQNCR 189
>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4
12-hydroxydehydrogenase/prostaglandin 15-keto reductase
{Guinea pig (Cavia porcellus) [TaxId: 10141]}
Length = 182
Score = 26.2 bits (56), Expect = 8.2
Identities = 18/88 (20%), Positives = 24/88 (27%), Gaps = 1/88 (1%)
Query: 250 IPL-FLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 308
+PL TIG +TA L +C V + V A GS V
Sbjct: 1 LPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGA 60
Query: 309 ADSFSLNAHKWFFATLDCCCLWVKDPRA 336
A S A+ +
Sbjct: 61 AGSDEKIAYLKQIGFDAAFNYKTVNSLE 88
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.136 0.415
Gapped
Lambda K H
0.267 0.0551 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,969,380
Number of extensions: 92970
Number of successful extensions: 283
Number of sequences better than 10.0: 1
Number of HSP's gapped: 273
Number of HSP's successfully gapped: 20
Length of query: 517
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 428
Effective length of database: 1,185,626
Effective search space: 507447928
Effective search space used: 507447928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.4 bits)