BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010126
(517 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|B Chain B, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|C Chain C, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|D Chain D, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
Length = 845
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/309 (31%), Positives = 146/309 (47%), Gaps = 47/309 (15%)
Query: 202 QAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSR 261
QAG + ++ AAE+AA+ D VL++GL+ E E DR + LP R ELV
Sbjct: 551 QAGVIKAIDDDEEIRNAAELAAKH-DKAVLIIGLNGEWETEGYDRENMDLPKRTNELVRA 609
Query: 262 VAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGK 321
V KA+ V+ V G PV+ + ++ A++ Y G G AIADVL+G P GK
Sbjct: 610 VLKANPNTVI-VNQSGTPVEFPWLED---ANALVQAWYGGNELGNAIADVLYGDVVPNGK 665
Query: 322 LPMTWYPQDYVSRLPMTDMRMRAARGYPGRT----YRFYKG---PVVFPFGHGMSYTTFA 374
L ++W P + + R G YR+Y+ V FPFG+G+SYTTF
Sbjct: 666 LSLSW-PFKLQDNPAFLNFKTEFGRVIYGEDIFVGYRYYEKLQRKVAFPFGYGLSYTTFE 724
Query: 375 HTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGD-MAGT 433
+S FK T +D +++ VD+KNTGD AG+
Sbjct: 725 LDISD---------------FKVT--------------DDKIAIS--VDVKNTGDKFAGS 753
Query: 434 HTLLVFAKPPAGNWS-PNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVV-DKFGIRRIP 491
+ V+ S P K+L GF+KVH+ G ++V +D+ + +S ++ G +
Sbjct: 754 EVVQVYFSALNSKVSRPVKELKGFEKVHLEPGEKKTVNIDLELKDAISYFNEELGKWHVE 813
Query: 492 MGEHSLHIG 500
GE+ + +G
Sbjct: 814 AGEYLVSVG 822
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 96/243 (39%), Gaps = 39/243 (16%)
Query: 1 MCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADA 60
M +YN+VNG+ +L + + +W+ DG ++SD + T YT A A
Sbjct: 190 MTAYNKVNGEHCSQSKKLLIDILRDEWKWDGMLMSDW------FGT--YT------TAAA 235
Query: 61 IKAGLDLDCGPFLAIHTEGAVRGGL-----LREEDVN-------LALAYTITVQMRLGMF 108
IK GLD++ T V L + EDV+ + + + + G+
Sbjct: 236 IKNGLDIEFPGPTRWRTRALVSHSLNSREQITTEDVDDRVRQVLKMIKFVVDNLEKTGIV 295
Query: 109 DGEPSAQPFGNLGPRDVCTPXXXXXXXXXXXXGIVLLKNSARTLPLSTLRHHTVAVIGPN 168
+ P + D+ IVLLKN LPL + + VIGPN
Sbjct: 296 ENGPESTSNNTKETSDLLRK--------IAADSIVLLKNKNNILPLK--KEDNIIVIGPN 345
Query: 169 SDVTVTMIGNYAGVACGY-TTPLQGI-SRYAKTI-HQAGCFGVACNGNQLIGAAEVAARQ 225
+ + G A + Y +P +GI ++ K + + G + G + AA+
Sbjct: 346 AKAKTSSGGGSASMNSYYVVSPYEGIVNKLGKEVDYTVGAYSHKSIGGLAESSLIDAAKP 405
Query: 226 ADA 228
ADA
Sbjct: 406 ADA 408
>pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|B Chain B, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|C Chain C, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|D Chain D, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
Length = 845
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/309 (31%), Positives = 145/309 (46%), Gaps = 47/309 (15%)
Query: 202 QAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSR 261
QAG + ++ AAE+AA+ D VL++GL+ E E DR LP R ELV
Sbjct: 551 QAGVIKAIDDDEEIRNAAELAAKH-DKAVLIIGLNGEWETEGYDRENXDLPKRTNELVRA 609
Query: 262 VAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGK 321
V KA+ V+V G PV+ + ++ A++ Y G G AIADVL+G P GK
Sbjct: 610 VLKANPN-TVIVNQSGTPVEFPWLED---ANALVQAWYGGNELGNAIADVLYGDVVPNGK 665
Query: 322 LPMTWYPQDYVSRLPMTDMRMRAARGYPGRT----YRFYKG---PVVFPFGHGMSYTTFA 374
L ++W P + + R G YR+Y+ V FPFG+G+SYTTF
Sbjct: 666 LSLSW-PFKLQDNPAFLNFKTEFGRVIYGEDIFVGYRYYEKLQRKVAFPFGYGLSYTTFE 724
Query: 375 HTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGD-MAGT 433
+S FK T +D +++ VD+KNTGD AG+
Sbjct: 725 LDISD---------------FKVT--------------DDKIAIS--VDVKNTGDKFAGS 753
Query: 434 HTLLVFAKPPAGNWS-PNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVV-DKFGIRRIP 491
+ V+ S P K+L GF+KVH+ G ++V +D+ + +S ++ G +
Sbjct: 754 EVVQVYFSALNSKVSRPVKELKGFEKVHLEPGEKKTVNIDLELKDAISYFNEELGKWHVE 813
Query: 492 MGEHSLHIG 500
GE+ + +G
Sbjct: 814 AGEYLVSVG 822
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 93/242 (38%), Gaps = 39/242 (16%)
Query: 2 CSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAI 61
+YN+VNG+ +L + + +W+ DG + SD + T YT A AI
Sbjct: 191 TAYNKVNGEHCSQSKKLLIDILRDEWKWDGXLXSDW------FGT--YT------TAAAI 236
Query: 62 KAGLDLDCGPFLAIHTEGAVRGGL-----LREEDVN-------LALAYTITVQMRLGMFD 109
K GLD++ T V L + EDV+ + + + + G+ +
Sbjct: 237 KNGLDIEFPGPTRWRTRALVSHSLNSREQITTEDVDDRVRQVLKXIKFVVDNLEKTGIVE 296
Query: 110 GEPSAQPFGNLGPRDVCTPXXXXXXXXXXXXGIVLLKNSARTLPLSTLRHHTVAVIGPNS 169
P + D+ IVLLKN LPL + + VIGPN+
Sbjct: 297 NGPESTSNNTKETSDLLRK--------IAADSIVLLKNKNNILPLK--KEDNIIVIGPNA 346
Query: 170 DVTVTMIGNYAGVACGY-TTPLQGI-SRYAKTI-HQAGCFGVACNGNQLIGAAEVAARQA 226
+ G A Y +P +GI ++ K + + G + G + AA+ A
Sbjct: 347 KAKTSSGGGSASXNSYYVVSPYEGIVNKLGKEVDYTVGAYSHKSIGGLAESSLIDAAKPA 406
Query: 227 DA 228
DA
Sbjct: 407 DA 408
>pdb|3ZYZ|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution.
pdb|3ZZ1|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution
Length = 713
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 141/557 (25%), Positives = 222/557 (39%), Gaps = 90/557 (16%)
Query: 1 MCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADA 60
MCSYN+VN C D L+ + Q GY+++D +N QH T + D
Sbjct: 201 MCSYNKVNTTWACEDQYTLQTVLKDQLGFPGYVMTD-------WNAQHTTVQSANSGLDM 253
Query: 61 IKAGLDLD-----CGPFL--AIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPS 113
G D + GP L A+++ V + + + A+ +T Q + G S
Sbjct: 254 SMPGTDFNGNNRLWGPALTNAVNSN-QVPTSRVDDMVTRILAAWYLTGQDQAGYPSFNIS 312
Query: 114 AQPFGNLGPRDVCTPXXXXXXXXXXXXGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTV 173
GN GIVLLKN A LPL + ++AV+G +
Sbjct: 313 RNVQGN----------HKTNVRAIARDGIVLLKNDANILPLK--KPASIAVVG-----SA 355
Query: 174 TMIGNYA----------------GVACG--------YTTPLQGISRYAKTIHQAGCFGVA 209
+IGN+A G+ G + P I+ A + Q ++
Sbjct: 356 AIIGNHARNSPSCNDKGCDDGALGMGWGSGAVNYPYFVAPYDAINTRASS--QGTQVTLS 413
Query: 210 CNGNQLIGAAEVAARQADATVLVMGLDQ-----SIEAEFIDRAGLLLPGRQQELVSRVAK 264
N GA+ AAR D ++ + D ++E DR L LV VA
Sbjct: 414 NTDNTSSGAS--AARGKDVAIVFITADSGEGYITVEGNAGDRNNLDPWHNGNALVQAVAG 471
Query: 265 ASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPM 324
A+ V++V+ G + + P++ A++W G P Q G A+ DVL+G +P GKL
Sbjct: 472 ANSN-VIVVVHSVGAIILEQILALPQVKAVVWAGLPSQESGNALVDVLWGDVSPSGKLVY 530
Query: 325 TW--YPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFP---FGHGMSYTTFAHT-LS 378
T P DY +R+ ++ + G Y+ + + P FG+G+SYT F ++ LS
Sbjct: 531 TIAKSPNDYNTRI-VSGGSDSFSEGL-FIDYKHFDDANITPRYEFGYGLSYTKFNYSRLS 588
Query: 379 KAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTL-L 437
S P ++ + + N V VDI N+G + G L
Sbjct: 589 VLSTAKSGPATGAVVPGGPSDLFQNVATVT-------------VDIANSGQVTGAEVAQL 635
Query: 438 VFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRR-IPMGEHS 496
P + +P KQL GF K+++T G + +I + LS D + +P G
Sbjct: 636 YITYPSSAPRTPPKQLRGFAKLNLTPGQSGTATFNIR-RRDLSYWDTASQKWVVPSGSFG 694
Query: 497 LHIGDLKHSISLQANLE 513
+ +G I L + L
Sbjct: 695 ISVGASSRDIRLTSTLS 711
>pdb|4I8D|A Chain A, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
pdb|4I8D|B Chain B, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
Length = 714
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 141/557 (25%), Positives = 222/557 (39%), Gaps = 90/557 (16%)
Query: 1 MCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADA 60
MCSYN+VN C D L+ + Q GY+++D +N QH T + D
Sbjct: 202 MCSYNKVNTTWACEDQYTLQTVLKDQLGFPGYVMTD-------WNAQHTTVQSANSGLDM 254
Query: 61 IKAGLDLD-----CGPFL--AIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPS 113
G D + GP L A+++ V + + + A+ +T Q + G S
Sbjct: 255 SMPGTDFNGNNRLWGPALTNAVNSN-QVPTSRVDDMVTRILAAWYLTGQDQAGYPSFNIS 313
Query: 114 AQPFGNLGPRDVCTPXXXXXXXXXXXXGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTV 173
GN GIVLLKN A LPL + ++AV+G +
Sbjct: 314 RNVQGN----------HKTNVRAIARDGIVLLKNDANILPLK--KPASIAVVG-----SA 356
Query: 174 TMIGNYA----------------GVACG--------YTTPLQGISRYAKTIHQAGCFGVA 209
+IGN+A G+ G + P I+ A + Q ++
Sbjct: 357 AIIGNHARNSPSCNDKGCDDGALGMGWGSGAVNYPYFVAPYDAINTRASS--QGTQVTLS 414
Query: 210 CNGNQLIGAAEVAARQADATVLVMGLDQ-----SIEAEFIDRAGLLLPGRQQELVSRVAK 264
N GA+ AAR D ++ + D ++E DR L LV VA
Sbjct: 415 NTDNTSSGAS--AARGKDVAIVFITADSGEGYITVEGNAGDRNNLDPWHNGNALVQAVAG 472
Query: 265 ASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPM 324
A+ V++V+ G + + P++ A++W G P Q G A+ DVL+G +P GKL
Sbjct: 473 ANSN-VIVVVHSVGAIILEQILALPQVKAVVWAGLPSQESGNALVDVLWGDVSPSGKLVY 531
Query: 325 TW--YPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFP---FGHGMSYTTFAHT-LS 378
T P DY +R+ ++ + G Y+ + + P FG+G+SYT F ++ LS
Sbjct: 532 TIAKSPNDYNTRI-VSGGSDSFSEGL-FIDYKHFDDANITPRYEFGYGLSYTKFNYSRLS 589
Query: 379 KAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTL-L 437
S P ++ + + N V VDI N+G + G L
Sbjct: 590 VLSTAKSGPATGAVVPGGPSDLFQNVATVT-------------VDIANSGQVTGAEVAQL 636
Query: 438 VFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRR-IPMGEHS 496
P + +P KQL GF K+++T G + +I + LS D + +P G
Sbjct: 637 YITYPSSAPRTPPKQLRGFAKLNLTPGQSGTATFNIR-RRDLSYWDTASQKWVVPSGSFG 695
Query: 497 LHIGDLKHSISLQANLE 513
+ +G I L + L
Sbjct: 696 ISVGASSRDIRLTSTLS 712
>pdb|2X40|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glycerol
pdb|2X41|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glucose
Length = 721
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 139/583 (23%), Positives = 222/583 (38%), Gaps = 149/583 (25%)
Query: 1 MCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADA 60
M +YN++NGK + +LK + +W +G+++SD + P +
Sbjct: 207 MSAYNKLNGKYCSQNEWLLKKVLREEWGFEGFVMSDW----------YAGDNP----VEQ 252
Query: 61 IKAGLDLDC-GPFLAIHTE---------GAVRGGLLREEDVNLALAYTITVQMRLGMFDG 110
+KAG DL G ++TE A++ G L EE ++ + + V +
Sbjct: 253 LKAGNDLIMPGKAYQVNTERRDEIEEIMEALKEGKLSEEVLDECVRNILKVLVNA----- 307
Query: 111 EPSAQPFGNLGPRDVCTPXXXXXXXXXXXXGIVLLKNSARTLPLSTLRHHTVAVIGPNSD 170
PS + + D+ G+VLL+N LPLS + +A+ G
Sbjct: 308 -PSFKNYRYSNKPDL--EKHAKVAYEAGAEGVVLLRNE-EALPLS--ENSKIALFGTGQI 361
Query: 171 VTVTMIGNYAGVACGYTTP------LQGISR---------------YAKTIHQAGCFGVA 209
T+ G G T P L+GI Y K + + +
Sbjct: 362 ETIK-----GGTGSGDTHPRYAISILEGIKERGLNFDEELAKTYEDYIKKMRETEEYKPR 416
Query: 210 CNG----------NQLIGAAEV--AARQADATVLVMGLDQSIEAEFIDRA----GLLLPG 253
+ + E+ A++ D V+V+ I E DR L
Sbjct: 417 RDSWGTIIKPKLPENFLSEKEIHKLAKKNDVAVIVIS---RISGEGYDRKPVKGDFYLSD 473
Query: 254 RQQELVSRVAKA--SRGPVVLVLM-CGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIAD 310
+ +L+ V++ +G V+VL+ G PV+V ++ + IL V GQ G +AD
Sbjct: 474 DETDLIKTVSREFHEQGKKVIVLLNIGSPVEVVSWRD--LVDGILLVWQAGQETGRIVAD 531
Query: 311 VLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRT----------------YR 354
VL GR NP GKLP T +P+DY S +P + +PG YR
Sbjct: 532 VLTGRINPSGKLPTT-FPRDY-SDVP--------SWTFPGEPKDNPQKVVYEEDIYVGYR 581
Query: 355 FYKGPVVFP---FGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTN 411
+Y V P FG+G+SYTTF Y+ N + +RV +
Sbjct: 582 YYDTFGVEPAYEFGYGLSYTTFE------------------YSDLNVSFDGETLRVQYR- 622
Query: 412 CNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNW-SPNKQLIGFKKVH-VTAGALQSV 469
I+NTG AG V+ K P G P ++L F K + G + V
Sbjct: 623 ------------IENTGGRAGKEVSQVYIKAPKGKIDKPFQELKAFHKTRLLNPGESEEV 670
Query: 470 RLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANL 512
L+I V S + + + GE+ + +G +I L+
Sbjct: 671 VLEIPVRDLASFNGEEWV--VEAGEYEVRVGASSRNIKLKGTF 711
>pdb|2X42|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Alpha-D-Glucose
Length = 721
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 138/583 (23%), Positives = 221/583 (37%), Gaps = 149/583 (25%)
Query: 1 MCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADA 60
M +YN++NGK + +LK + +W +G+++S + P +
Sbjct: 207 MSAYNKLNGKYCSQNEWLLKKVLREEWGFEGFVMS----------AWYAGDNP----VEQ 252
Query: 61 IKAGLDLDC-GPFLAIHTE---------GAVRGGLLREEDVNLALAYTITVQMRLGMFDG 110
+KAG DL G ++TE A++ G L EE ++ + + V +
Sbjct: 253 LKAGNDLIMPGKAYQVNTERRDEIEEIMEALKEGKLSEEVLDECVRNILKVLVNA----- 307
Query: 111 EPSAQPFGNLGPRDVCTPXXXXXXXXXXXXGIVLLKNSARTLPLSTLRHHTVAVIGPNSD 170
PS + + D+ G+VLL+N LPLS + +A+ G
Sbjct: 308 -PSFKNYRYSNKPDL--EKHAKVAYEAGAEGVVLLRNE-EALPLS--ENSKIALFGTGQI 361
Query: 171 VTVTMIGNYAGVACGYTTP------LQGISR---------------YAKTIHQAGCFGVA 209
T+ G G T P L+GI Y K + + +
Sbjct: 362 ETIK-----GGTGSGDTHPRYAISILEGIKERGLNFDEELAKTYEDYIKKMRETEEYKPR 416
Query: 210 CNG----------NQLIGAAEV--AARQADATVLVMGLDQSIEAEFIDRA----GLLLPG 253
+ + E+ A++ D V+V+ I E DR L
Sbjct: 417 RDSWGTIIKPKLPENFLSEKEIHKLAKKNDVAVIVIS---RISGEGYDRKPVKGDFYLSD 473
Query: 254 RQQELVSRVAKA--SRGPVVLVLM-CGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIAD 310
+ +L+ V++ +G V+VL+ G PV+V ++ + IL V GQ G +AD
Sbjct: 474 DETDLIKTVSREFHEQGKKVIVLLNIGSPVEVVSWRD--LVDGILLVWQAGQETGRIVAD 531
Query: 311 VLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRT----------------YR 354
VL GR NP GKLP T +P+DY S +P + +PG YR
Sbjct: 532 VLTGRINPSGKLPTT-FPRDY-SDVP--------SWTFPGEPKDNPQKVVYEEDIYVGYR 581
Query: 355 FYKGPVVFP---FGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTN 411
+Y V P FG+G+SYTTF Y+ N + +RV +
Sbjct: 582 YYDTFGVEPAYEFGYGLSYTTFE------------------YSDLNVSFDGETLRVQYR- 622
Query: 412 CNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNW-SPNKQLIGFKKVH-VTAGALQSV 469
I+NTG AG V+ K P G P ++L F K + G + V
Sbjct: 623 ------------IENTGGRAGKEVSQVYIKAPKGKIDKPFQELKAFHKTRLLNPGESEEV 670
Query: 470 RLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANL 512
L+I V S + + + GE+ + +G +I L+
Sbjct: 671 VLEIPVRDLASFNGEEWV--VEAGEYEVRVGASSRNIKLKGTF 711
>pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose.
pdb|4I3G|B Chain B, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose
Length = 829
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 123/273 (45%), Gaps = 68/273 (24%)
Query: 222 AARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVD 281
+AR+A T +V D E +DR L LPG Q +L+S VA A+ +V VL G V
Sbjct: 562 SARKAR-TAVVFAYDDGTEG--VDRPNLSLPGTQDKLISAVADANPNTIV-VLNTGSSVL 617
Query: 282 VSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYP----QDYVSRLPM 337
+ + + A+L + YPGQAG A A +L+G NP GKL + +P Q V+ P
Sbjct: 618 MPWLS---KTRAVLDMWYPGQAGAEATAALLYGDVNPSGKLTQS-FPAAENQHAVAGDPT 673
Query: 338 TDMRMRAARGYPG----RTYR---------FYKGPV--VFPFGHGMSYTTFAHTLSKAPN 382
+ YPG +TYR F K V +FPFGHG+SYT+F +
Sbjct: 674 S---------YPGVDNQQTYREGIHVGYRWFDKENVKPLFPFGHGLSYTSFTQS------ 718
Query: 383 QFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVF--A 440
A V T+ L + V ++N+G AG + + A
Sbjct: 719 ---------------------APTVVRTSTG---GLKVTVTVRNSGKRAGQEVVQAYLGA 754
Query: 441 KPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDI 473
P K+L+G+ KV + AG ++V +++
Sbjct: 755 SPNVTAPQAKKKLVGYTKVSLAAGEAKTVTVNV 787
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 86/214 (40%), Gaps = 39/214 (18%)
Query: 1 MCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADA 60
MC+YN +NGKP+C + ++L N + QW G+++SD + TP DA
Sbjct: 239 MCAYNGLNGKPSCGNDELLNNVLRTQWGFQGWVMSD------------WLATP---GTDA 283
Query: 61 IKAGLDLDCG----------------PFLAIHTEGAVRGGLLREEDVNLALAYTITVQMR 104
I GLD + G F + AV G + E V + + +
Sbjct: 284 ITKGLDQEMGVELPGDVPKGEPSPPAKFFGEALKTAVLNGTVPEAAVTRSAERIVGQMEK 343
Query: 105 LGMFDGEPSAQPFGNLGPRDVCTPXXXXXXXXXXXXGIVLLKNSARTLPLSTLRHHTVAV 164
G+ P+ +P RD G VLL+N + LPL+ ++AV
Sbjct: 344 FGLLLATPAPRP-----ERDKA--GAQAVSRKVAENGAVLLRNEGQALPLAGDAGKSIAV 396
Query: 165 IGPNS-DVTVTMIGNYAGVACGYTTPLQGISRYA 197
IGP + D VT +G+ V PL I A
Sbjct: 397 IGPTAVDPKVTGLGSAHVVPDSAAAPLDTIKARA 430
>pdb|3RRX|A Chain A, Crystal Structure Of Q683a Mutant Of
Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas
Sp. Bb1
Length = 822
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 99/378 (26%), Positives = 148/378 (39%), Gaps = 47/378 (12%)
Query: 1 MCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPE-EAAAD 59
M S+N NGK D +L + + Q DG++VSD +N + + E A
Sbjct: 259 MASFNSWNGKRVHGDKHLLTDVLKNQLGFDGFVVSD-------WNAHKFVEGCDLEQCAQ 311
Query: 60 AIKAGLDLDCGP--FLAIH--TEGAVRGGLLREEDVNLALAYTITVQMRLGMF-DGEPSA 114
AI AG+D+ P F A + T V+ G++ E +N A+ + ++R G+F +PSA
Sbjct: 312 AINAGVDVIMVPEHFEAFYHNTVKQVKAGVIAESRINDAVRRFLRAKIRWGVFTKSKPSA 371
Query: 115 QPFGNLGPRDVCTPXXXXXXXXXXXXGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVT 174
+P P+ + +VLLKN+ LP+ VA G N+
Sbjct: 372 RPESQ-HPQWLGAAEHRTLAREAVRKSLVLLKNNESILPIKASSRILVAGKGANA----- 425
Query: 175 MIGNYAGVACGYTTPLQGISRYAKTIHQA-----GCFGVACNGNQLIGAAEVAARQADAT 229
I AG G++ QG A G I +E +
Sbjct: 426 -INMQAG---GWSVSWQGTDNTNSDFPNATSIFSGLQSQVTKAGGKITLSESGEYTSKPD 481
Query: 230 VLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVA-----KASRGPVVLVLMCGGPVDVSF 284
V ++ + + AE+ LL Q E +A KA PVV V + G P+ V+
Sbjct: 482 VAIVVIGEEPYAEWFGDIELL--EFQHETKHALALLKQLKADNIPVVTVFLSGRPLWVNK 539
Query: 285 AKNDPRIGAILWVGYPGQAGGAAIADVLFGRA------NPGGKLPMTW--YPQDYVSRLP 336
N W+ PG + G +ADVL + GKL +W Y + L
Sbjct: 540 ELNASDAFVAAWL--PG-SEGEGVADVLLTNKQGKTQFDFTGKLSFSWPKYDDQFTLNLN 596
Query: 337 MTDMRMRAARGYPGRTYR 354
D A GY G TY+
Sbjct: 597 DADYDPLFAYGY-GLTYQ 613
>pdb|3USZ|A Chain A, Crystal Structure Of Truncated Exo-1,31,4-Beta-Glucanase
(Exop) From Pseudoalteromonas Sp. Bb1
pdb|3UT0|A Chain A, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|B Chain B, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|C Chain C, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|D Chain D, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
Length = 822
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 99/378 (26%), Positives = 148/378 (39%), Gaps = 47/378 (12%)
Query: 1 MCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPE-EAAAD 59
M S+N NGK D +L + + Q DG++VSD +N + + E A
Sbjct: 259 MASFNSWNGKRVHGDKHLLTDVLKNQLGFDGFVVSD-------WNAHKFVEGCDLEQCAQ 311
Query: 60 AIKAGLDLDCGP--FLAIH--TEGAVRGGLLREEDVNLALAYTITVQMRLGMF-DGEPSA 114
AI AG+D+ P F A + T V+ G++ E +N A+ + ++R G+F +PSA
Sbjct: 312 AINAGVDVIMVPEHFEAFYHNTVKQVKAGVIAESRINDAVRRFLRAKIRWGVFTKSKPSA 371
Query: 115 QPFGNLGPRDVCTPXXXXXXXXXXXXGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVT 174
+P P+ + +VLLKN+ LP+ VA G N+
Sbjct: 372 RPESQ-HPQWLGAAEHRTLAREAVRKSLVLLKNNESILPIKASSRILVAGKGANA----- 425
Query: 175 MIGNYAGVACGYTTPLQGISRYAKTIHQA-----GCFGVACNGNQLIGAAEVAARQADAT 229
I AG G++ QG A G I +E +
Sbjct: 426 -INMQAG---GWSVSWQGTDNTNSDFPNATSIFSGLQSQVTKAGGKITLSESGEYTSKPD 481
Query: 230 VLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVA-----KASRGPVVLVLMCGGPVDVSF 284
V ++ + + AE+ LL Q E +A KA PVV V + G P+ V+
Sbjct: 482 VAIVVIGEEPYAEWFGDIELL--EFQHETKHALALLKQLKADNIPVVTVFLSGRPLWVNK 539
Query: 285 AKNDPRIGAILWVGYPGQAGGAAIADVLFGRA------NPGGKLPMTW--YPQDYVSRLP 336
N W+ PG + G +ADVL + GKL +W Y + L
Sbjct: 540 ELNASDAFVAAWL--PG-SEGEGVADVLLTNKQGKTQFDFTGKLSFSWPKYDDQFTLNLN 596
Query: 337 MTDMRMRAARGYPGRTYR 354
D A GY G TY+
Sbjct: 597 DADYDPLFAYGY-GLTYQ 613
>pdb|1LQ2|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X38|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X39|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
Length = 602
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 91/375 (24%), Positives = 143/375 (38%), Gaps = 82/375 (21%)
Query: 1 MCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADA 60
M SY+ NG A+ D++ + + G+++SD + + + T + +
Sbjct: 250 MISYSSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGIDRI--TTPAGSDYSYSVKAS 307
Query: 61 IKAGLDLDCGP-----FLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFD---GEP 112
I AGLD+ P F++I T G V GG++ ++ A+ + V+ +G+F+ +P
Sbjct: 308 ILAGLDMIMVPNKYQQFISILT-GHVNGGVIPMSRIDDAVTRILRVKFTMGLFENPYADP 366
Query: 113 S-AQPFGNLGPRDVCTPXXXXXXXXXXXXGIVLLKN-----SARTLPLSTLRHHTVAVIG 166
+ A+ G RD+ +VLLKN A LPL + + V G
Sbjct: 367 AMAEQLGKQEHRDLA--------REAARKSLVLLKNGKTSTDAPLLPLPK-KAPKILVAG 417
Query: 167 PNSDVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQA 226
++D G CG TI G G G ++ A + A +
Sbjct: 418 SHAD--------NLGYQCG-----------GWTIEWQGDTGRTTVGTTILEAVKAAVDPS 458
Query: 227 DATVLVMGLDQSIEAEFIDRAG----------------------LLLPGRQQELVSRVAK 264
V ++ +AEF+ G L +P V V
Sbjct: 459 TVVVFA----ENPDAEFVKSGGFSYAIVAVGEHPYTETKGDNLNLTIPEPGLSTVQAVCG 514
Query: 265 ASRGPVVLVLMCGGPVDVS--FAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKL 322
R VL+ G PV V A +D + A L PG G + D LFG G+L
Sbjct: 515 GVR--CATVLISGRPVVVQPLLAASDALVAAWL----PGSEG-QGVTDALFGDFGFTGRL 567
Query: 323 PMTWYPQDYVSRLPM 337
P TW+ V +LPM
Sbjct: 568 PRTWFKS--VDQLPM 580
>pdb|1EX1|A Chain A, Beta-D-Glucan Exohydrolase From Barley
pdb|1IEX|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
4i,4iii,4v-S-Trithiocellohexaose
pdb|1IEW|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
2-Deoxy-2-Fluoro-Alpha-D-Glucoside
pdb|1IEV|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Cyclohexitol
pdb|1IEQ|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1
pdb|1J8V|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With 4'-Nitrophenyl
3i-Thiolaminaritrioside
Length = 605
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 91/375 (24%), Positives = 143/375 (38%), Gaps = 82/375 (21%)
Query: 1 MCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADA 60
M SY+ NG A+ D++ + + G+++SD + + + T + +
Sbjct: 250 MISYSSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGIDRI--TTPAGSDYSYSVKAS 307
Query: 61 IKAGLDLDCGP-----FLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFD---GEP 112
I AGLD+ P F++I T G V GG++ ++ A+ + V+ +G+F+ +P
Sbjct: 308 ILAGLDMIMVPNKYQQFISILT-GHVNGGVIPMSRIDDAVTRILRVKFTMGLFENPYADP 366
Query: 113 S-AQPFGNLGPRDVCTPXXXXXXXXXXXXGIVLLKN-----SARTLPLSTLRHHTVAVIG 166
+ A+ G RD+ +VLLKN A LPL + + V G
Sbjct: 367 AMAEQLGKQEHRDLA--------REAARKSLVLLKNGKTSTDAPLLPLPK-KAPKILVAG 417
Query: 167 PNSDVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQA 226
++D G CG TI G G G ++ A + A +
Sbjct: 418 SHAD--------NLGYQCG-----------GWTIEWQGDTGRTTVGTTILEAVKAAVDPS 458
Query: 227 DATVLVMGLDQSIEAEFIDRAG----------------------LLLPGRQQELVSRVAK 264
V ++ +AEF+ G L +P V V
Sbjct: 459 TVVVFA----ENPDAEFVKSGGFSYAIVAVGEHPYTETKGDNLNLTIPEPGLSTVQAVCG 514
Query: 265 ASRGPVVLVLMCGGPVDVS--FAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKL 322
R VL+ G PV V A +D + A L PG G + D LFG G+L
Sbjct: 515 GVR--CATVLISGRPVVVQPLLAASDALVAAWL----PGSEG-QGVTDALFGDFGFTGRL 567
Query: 323 PMTWYPQDYVSRLPM 337
P TW+ V +LPM
Sbjct: 568 PRTWFKS--VDQLPM 580
>pdb|3BMX|A Chain A, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis
pdb|3BMX|B Chain B, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis
pdb|3NVD|A Chain A, Structure Of Ybbd In Complex With Pugnac
pdb|3NVD|B Chain B, Structure Of Ybbd In Complex With Pugnac
Length = 642
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/180 (18%), Positives = 75/180 (41%), Gaps = 19/180 (10%)
Query: 11 PTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCG 70
P ++ + + +G IV+D ++ + + H+ + EEA A+KAG+D+
Sbjct: 293 PATLSKKVMTGLLRQEMGFNGVIVTDALNMKAIAD--HFGQ--EEAVVMAVKAGVDIALM 348
Query: 71 P--FLAIHTEG-----------AVRGGLLREEDVNLALAYTITVQMRLGMFDGE--PSAQ 115
P ++ E AV+ G + E+ +N ++ I+++++ GM+ S +
Sbjct: 349 PASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVERIISLKIKRGMYPARNSDSTK 408
Query: 116 PFGNLGPRDVCTPXXXXXXXXXXXXGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTM 175
+ V + + +LKN TLP + + ++ P + T ++
Sbjct: 409 EKIAKAKKIVGSKQHLKAEKKLAEKAVTVLKNEQHTLPFKPKKGSRILIVAPYEEQTASI 468
>pdb|4GYJ|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1)
pdb|4GYJ|B Chain B, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1)
pdb|4GYK|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1211)
pdb|4GYK|B Chain B, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1211)
Length = 648
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 33/180 (18%), Positives = 75/180 (41%), Gaps = 19/180 (10%)
Query: 11 PTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCG 70
P ++ + + +G IV++ ++ + + H+ + EEA A+KAG+D+
Sbjct: 297 PATLSKKVMTGLLRQEMGFNGVIVTNALNMKAIAD--HFGQ--EEAVVMAVKAGVDIALM 352
Query: 71 P--FLAIHTEG-----------AVRGGLLREEDVNLALAYTITVQMRLGMF--DGEPSAQ 115
P ++ E AV+ G + E+ +N ++ I+++++ GM+ S +
Sbjct: 353 PASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVERIISLKIKRGMYPARNSDSTK 412
Query: 116 PFGNLGPRDVCTPXXXXXXXXXXXXGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTM 175
+ V + + +LKN TLP + + ++ P + T ++
Sbjct: 413 EKIAKAKKIVGSKQHLKAEKKLAEKAVTVLKNEQHTLPFKPKKGSRILIVAPYEEQTASI 472
>pdb|3LK6|A Chain A, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|B Chain B, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|C Chain C, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|D Chain D, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
Length = 616
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 33/180 (18%), Positives = 75/180 (41%), Gaps = 19/180 (10%)
Query: 11 PTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCG 70
P ++ + + +G IV++ ++ + + H+ + EEA A+KAG+D+
Sbjct: 267 PATLSKKVMTGLLRQEMGFNGVIVTNALNMKAIAD--HFGQ--EEAVVMAVKAGVDIALM 322
Query: 71 P--FLAIHTE-----------GAVRGGLLREEDVNLALAYTITVQMRLGMF--DGEPSAQ 115
P ++ E AV+ G + E+ +N ++ I+++++ GM+ S +
Sbjct: 323 PASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVERIISLKIKRGMYPARNSDSTK 382
Query: 116 PFGNLGPRDVCTPXXXXXXXXXXXXGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTM 175
+ V + + +LKN TLP + + ++ P + T ++
Sbjct: 383 EKIAKAKKIVGSKQHLKAEKKLAEKAVTVLKNEQHTLPFKPKKGSRILIVAPYEEQTASI 442
>pdb|3TEV|A Chain A, The Crystal Structure Of Glycosyl Hydrolase From
Deinococcus Radiodurans R1
pdb|3TEV|B Chain B, The Crystal Structure Of Glycosyl Hydrolase From
Deinococcus Radiodurans R1
Length = 351
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 4 YNQVNGK-PTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIK 62
Y+ ++ + P P IL + +W DG IV+ DS G +Y R EAA A++
Sbjct: 229 YDALDAEHPATLSPRILTGLLREEWGYDGVIVT--DSXGXQAIDANYGRG--EAAVRALR 284
Query: 63 AGLDL 67
AG DL
Sbjct: 285 AGADL 289
>pdb|3EOJ|A Chain A, Fmo Protein From Prosthecochloris Aestuarii 2k At 1.3a
Resolution
Length = 366
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 488 RRIPMGEHSLHIGDLKHSISLQANL 512
RRI +GE SL +GD HS S + ++
Sbjct: 94 RRIAVGEGSLSVGDFSHSFSFEGSV 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,874,135
Number of Sequences: 62578
Number of extensions: 667114
Number of successful extensions: 1337
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1283
Number of HSP's gapped (non-prelim): 32
length of query: 517
length of database: 14,973,337
effective HSP length: 103
effective length of query: 414
effective length of database: 8,527,803
effective search space: 3530510442
effective search space used: 3530510442
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)