Query 010126
Match_columns 517
No_of_seqs 253 out of 1812
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 21:21:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010126.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010126hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03080 Probable beta-xylosid 100.0 3E-111 7E-116 941.3 49.9 507 1-510 263-779 (779)
2 PRK15098 beta-D-glucoside gluc 100.0 3E-102 7E-107 871.2 48.7 470 1-507 252-758 (765)
3 PF01915 Glyco_hydro_3_C: Glyc 100.0 1.8E-39 3.8E-44 316.8 13.9 215 142-372 1-227 (227)
4 COG1472 BglX Beta-glucosidase- 100.0 7.9E-29 1.7E-33 258.3 12.5 158 1-180 213-372 (397)
5 PF00933 Glyco_hydro_3: Glycos 99.9 4.1E-22 8.9E-27 202.2 5.6 97 1-101 199-299 (299)
6 PF14310 Fn3-like: Fibronectin 99.8 6.7E-21 1.5E-25 151.5 7.3 69 434-503 1-71 (71)
7 PRK05337 beta-hexosaminidase; 99.7 1.6E-16 3.4E-21 163.1 8.4 93 1-105 211-309 (337)
8 PF07705 CARDB: CARDB; InterP 96.3 0.022 4.7E-07 47.4 8.1 61 417-500 20-82 (101)
9 PF12690 BsuPI: Intracellular 95.7 0.11 2.4E-06 42.3 9.3 69 418-498 2-81 (82)
10 PF10633 NPCBM_assoc: NPCBM-as 94.5 0.18 4E-06 40.3 7.4 64 417-499 6-73 (78)
11 PF14874 PapD-like: Flagellar- 90.3 2.8 6.1E-05 35.0 9.5 60 417-482 21-80 (102)
12 cd00407 Urease_beta Urease bet 89.3 0.86 1.9E-05 38.2 5.2 51 418-472 20-82 (101)
13 PRK13203 ureB urease subunit b 88.6 0.98 2.1E-05 37.9 5.1 51 418-472 20-82 (102)
14 TIGR00192 urease_beta urease, 88.5 1 2.3E-05 37.6 5.2 51 418-472 20-82 (101)
15 PRK13202 ureB urease subunit b 88.3 1.1 2.3E-05 37.7 5.2 51 418-472 21-83 (104)
16 PF07385 DUF1498: Protein of u 87.9 1.1 2.3E-05 43.1 5.6 59 423-487 111-180 (225)
17 PF00699 Urease_beta: Urease b 86.7 1.2 2.7E-05 37.2 4.6 52 417-472 18-81 (100)
18 PRK13201 ureB urease subunit b 85.7 1.7 3.7E-05 38.1 5.2 51 418-472 20-82 (136)
19 PRK13204 ureB urease subunit b 84.5 2 4.3E-05 38.7 5.1 51 418-472 43-105 (159)
20 PRK13205 ureB urease subunit b 84.4 2 4.4E-05 38.5 5.1 51 418-472 20-82 (162)
21 COG1470 Predicted membrane pro 83.6 5.2 0.00011 42.6 8.5 71 417-503 398-469 (513)
22 PF13473 Cupredoxin_1: Cupredo 83.5 4.2 9.1E-05 34.3 6.7 51 419-501 44-94 (104)
23 PRK13198 ureB urease subunit b 83.4 2.4 5.1E-05 38.2 5.1 51 418-472 48-110 (158)
24 PF05506 DUF756: Domain of unk 81.2 20 0.00044 29.2 9.8 47 419-475 21-67 (89)
25 PF07610 DUF1573: Protein of u 79.7 3.3 7.2E-05 29.4 4.0 43 421-472 1-44 (45)
26 COG0832 UreB Urea amidohydrola 78.5 4.4 9.5E-05 33.9 4.7 52 417-472 19-82 (106)
27 COG1470 Predicted membrane pro 78.2 3.1 6.8E-05 44.2 4.8 74 417-503 285-360 (513)
28 PRK13192 bifunctional urease s 78.0 4 8.6E-05 38.6 4.9 51 418-472 129-191 (208)
29 PF06280 DUF1034: Fn3-like dom 75.9 27 0.00059 29.7 9.4 59 417-475 9-80 (112)
30 PF00345 PapD_N: Pili and flag 75.8 10 0.00022 32.8 6.8 54 419-475 17-73 (122)
31 PF06030 DUF916: Bacterial pro 75.2 12 0.00027 32.6 7.1 57 417-475 28-103 (121)
32 PRK13986 urease subunit alpha; 74.1 5.7 0.00012 38.0 4.9 51 418-472 125-187 (225)
33 TIGR02695 azurin azurin. Azuri 71.4 8.6 0.00019 33.8 5.0 53 419-475 26-99 (125)
34 PF00927 Transglut_C: Transglu 71.3 12 0.00026 31.6 6.0 58 417-475 16-76 (107)
35 PF10087 DUF2325: Uncharacteri 70.4 33 0.00072 28.4 8.4 40 219-273 42-81 (97)
36 PF04744 Monooxygenase_B: Mono 68.0 12 0.00026 38.8 6.0 53 417-474 264-334 (381)
37 COG1160 Predicted GTPases [Gen 66.4 17 0.00036 38.9 6.9 47 217-276 75-121 (444)
38 PF14016 DUF4232: Protein of u 66.1 52 0.0011 28.9 9.2 58 418-475 20-82 (131)
39 PF09624 DUF2393: Protein of u 62.0 21 0.00046 32.1 6.0 59 417-475 63-133 (149)
40 PF06510 DUF1102: Protein of u 61.8 57 0.0012 29.4 8.4 54 417-475 69-124 (146)
41 PF05753 TRAP_beta: Translocon 57.3 75 0.0016 29.9 8.9 61 417-485 39-106 (181)
42 PF08530 PepX_C: X-Pro dipepti 56.7 33 0.00071 32.8 6.7 56 417-475 97-162 (218)
43 PF14796 AP3B1_C: Clathrin-ada 56.2 33 0.00072 31.0 6.1 54 417-475 86-140 (145)
44 cd00938 HisRS_RNA HisRS_RNA bi 52.0 35 0.00075 24.4 4.3 31 77-107 13-43 (45)
45 cd06533 Glyco_transf_WecG_TagA 51.0 69 0.0015 29.6 7.6 41 223-282 97-137 (171)
46 PRK00286 xseA exodeoxyribonucl 50.4 84 0.0018 33.7 9.2 58 214-283 179-238 (438)
47 PF13157 DUF3992: Protein of u 49.7 1.4E+02 0.003 24.9 8.2 67 417-498 25-91 (92)
48 TIGR01759 MalateDH-SF1 malate 48.5 17 0.00036 37.5 3.3 59 220-282 74-134 (323)
49 PRK13556 azoreductase; Provisi 47.9 47 0.001 31.6 6.2 38 216-264 80-117 (208)
50 TIGR03096 nitroso_cyanin nitro 47.2 69 0.0015 28.6 6.5 27 459-501 94-120 (135)
51 PF03808 Glyco_tran_WecB: Glyc 46.5 68 0.0015 29.6 6.8 49 215-282 89-139 (172)
52 PRK13533 7-cyano-7-deazaguanin 46.4 31 0.00068 37.6 5.2 48 22-70 74-121 (487)
53 PRK13555 azoreductase; Provisi 46.0 47 0.001 31.9 5.8 38 216-264 80-117 (208)
54 TIGR00237 xseA exodeoxyribonuc 44.9 1.3E+02 0.0027 32.4 9.4 57 215-283 174-233 (432)
55 PF09544 DUF2381: Protein of u 44.1 1.6E+02 0.0034 30.0 9.4 57 417-475 203-260 (289)
56 PLN02303 urease 43.9 31 0.00068 39.8 4.8 51 418-472 150-212 (837)
57 TIGR03079 CH4_NH3mon_ox_B meth 43.4 39 0.00085 35.1 4.9 54 417-475 283-354 (399)
58 PF07233 DUF1425: Protein of u 43.4 1.9E+02 0.0041 23.9 9.4 57 417-475 25-82 (94)
59 TIGR01756 LDH_protist lactate 42.9 16 0.00035 37.5 2.2 57 221-282 56-115 (313)
60 PF09851 SHOCT: Short C-termin 41.7 60 0.0013 21.1 4.0 26 74-99 5-30 (31)
61 PF06205 GT36_AF: Glycosyltran 38.9 29 0.00063 28.6 2.7 27 447-475 58-84 (90)
62 PLN00135 malate dehydrogenase 38.1 30 0.00064 35.5 3.2 58 221-282 54-113 (309)
63 PRK05442 malate dehydrogenase; 38.1 32 0.00069 35.5 3.5 56 221-282 76-135 (326)
64 PF11614 FixG_C: IG-like fold 37.3 1.2E+02 0.0026 25.9 6.6 50 419-475 34-84 (118)
65 PF00703 Glyco_hydro_2: Glycos 37.3 2E+02 0.0043 23.3 7.8 63 417-484 19-81 (110)
66 cd00704 MDH Malate dehydrogena 37.1 31 0.00068 35.5 3.3 59 220-282 71-131 (323)
67 PRK15249 fimbrial chaperone pr 36.6 91 0.002 30.9 6.3 54 419-474 45-103 (253)
68 PF02601 Exonuc_VII_L: Exonucl 36.5 1.4E+02 0.0031 30.3 8.1 57 214-282 58-120 (319)
69 TIGR01757 Malate-DH_plant mala 35.6 30 0.00064 36.6 2.8 56 221-282 116-175 (387)
70 cd01338 MDH_choloroplast_like 35.4 34 0.00075 35.2 3.2 57 220-282 73-133 (322)
71 COG1361 S-layer domain [Cell e 35.2 1.1E+02 0.0025 33.2 7.5 58 417-475 168-226 (500)
72 TIGR03566 FMN_reduc_MsuE FMN r 34.8 90 0.0019 28.7 5.7 52 214-276 57-110 (174)
73 PRK09926 putative chaperone pr 34.7 1.1E+02 0.0023 30.2 6.5 55 419-475 42-100 (246)
74 PRK13534 7-cyano-7-deazaguanin 34.2 55 0.0012 37.1 4.8 49 21-70 72-120 (639)
75 cd09030 DUF1425 Putative perip 33.6 2.3E+02 0.005 23.5 7.5 57 417-475 33-90 (101)
76 PF08885 GSCFA: GSCFA family; 33.3 1.2E+02 0.0025 30.2 6.4 95 215-314 91-208 (251)
77 PRK09918 putative fimbrial cha 33.0 1.8E+02 0.0038 28.4 7.6 52 419-474 41-93 (230)
78 PRK00170 azoreductase; Reviewe 32.5 89 0.0019 29.2 5.4 38 215-263 76-113 (201)
79 PF00009 GTP_EFTU: Elongation 32.4 1.7E+02 0.0036 27.0 7.2 47 216-275 84-130 (188)
80 PF00056 Ldh_1_N: lactate/mala 32.1 13 0.00028 33.3 -0.4 55 221-282 65-123 (141)
81 cd03708 GTPBP_III Domain III o 32.0 88 0.0019 25.0 4.6 39 459-500 44-82 (87)
82 COG0039 Mdh Malate/lactate deh 31.9 44 0.00096 34.3 3.3 57 221-282 65-123 (313)
83 COG1182 AcpD Acyl carrier prot 31.8 1.3E+02 0.0029 28.8 6.2 37 217-264 79-115 (202)
84 COG4454 Uncharacterized copper 31.0 66 0.0014 29.4 3.8 18 458-475 115-132 (158)
85 PLN00112 malate dehydrogenase 30.8 37 0.0008 36.6 2.6 58 221-282 172-231 (444)
86 PRK15295 fimbrial assembly cha 30.4 1.7E+02 0.0036 28.5 6.9 55 419-475 36-91 (226)
87 PF11611 DUF4352: Domain of un 30.4 73 0.0016 27.0 4.1 59 417-475 37-101 (123)
88 cd01857 HSR1_MMR1 HSR1/MMR1. 30.3 1.1E+02 0.0024 26.9 5.3 18 217-234 3-20 (141)
89 cd01336 MDH_cytoplasmic_cytoso 30.3 46 0.001 34.3 3.2 58 221-282 74-133 (325)
90 PRK15299 fimbrial chaperone pr 30.2 1.5E+02 0.0033 28.7 6.7 54 419-474 39-94 (227)
91 TIGR00696 wecB_tagA_cpsF bacte 29.7 2.2E+02 0.0049 26.5 7.4 40 224-282 99-138 (177)
92 TIGR03352 VI_chp_3 type VI sec 29.1 1.6E+02 0.0035 26.6 6.1 25 451-475 80-104 (146)
93 cd00300 LDH_like L-lactate deh 29.1 39 0.00084 34.3 2.4 57 221-282 62-120 (300)
94 TIGR01758 MDH_euk_cyt malate d 29.0 48 0.001 34.1 3.1 56 221-282 71-130 (324)
95 PF10662 PduV-EutP: Ethanolami 28.6 2.2E+02 0.0048 25.7 6.9 20 216-235 54-73 (143)
96 PRK15218 fimbrial chaperone pr 28.3 2.4E+02 0.0051 27.5 7.6 55 419-475 35-93 (226)
97 cd05294 LDH-like_MDH_nadp A la 28.3 58 0.0013 33.2 3.5 57 221-282 68-126 (309)
98 PF06858 NOG1: Nucleolar GTP-b 27.9 1.8E+02 0.0039 22.0 5.1 24 252-275 31-55 (58)
99 TIGR01772 MDH_euk_gproteo mala 27.8 66 0.0014 33.0 3.8 55 221-282 63-121 (312)
100 PRK15246 fimbrial assembly cha 27.5 1.9E+02 0.0042 28.2 6.9 54 419-474 27-84 (233)
101 PF07495 Y_Y_Y: Y_Y_Y domain; 27.2 1.3E+02 0.0028 22.4 4.6 11 490-500 36-46 (66)
102 PF00553 CBM_2: Cellulose bind 27.2 1.1E+02 0.0024 25.5 4.5 15 417-431 14-28 (101)
103 PRK13211 N-acetylglucosamine-b 27.0 2E+02 0.0043 31.4 7.4 48 417-475 328-375 (478)
104 PRK10202 ebgC cryptic beta-D-g 26.4 1.3E+02 0.0029 27.2 5.1 14 504-517 133-146 (149)
105 PF01345 DUF11: Domain of unkn 25.8 89 0.0019 24.3 3.5 18 417-434 42-59 (76)
106 TIGR01451 B_ant_repeat conserv 25.8 1E+02 0.0022 22.5 3.5 26 417-443 13-38 (53)
107 PRK01355 azoreductase; Reviewe 25.7 2E+02 0.0043 27.1 6.4 40 214-264 66-105 (199)
108 PF02421 FeoB_N: Ferrous iron 25.5 1.7E+02 0.0037 26.7 5.7 39 223-276 76-114 (156)
109 TIGR01763 MalateDH_bact malate 25.5 53 0.0012 33.4 2.6 53 223-282 67-123 (305)
110 cd01337 MDH_glyoxysomal_mitoch 25.0 61 0.0013 33.2 2.9 57 221-282 64-122 (310)
111 PRK09739 hypothetical protein; 24.8 1.5E+02 0.0032 27.9 5.4 39 214-263 68-106 (199)
112 PRK15253 putative fimbrial ass 24.7 2.2E+02 0.0048 28.0 6.7 54 419-474 50-107 (242)
113 cd05290 LDH_3 A subgroup of L- 24.2 74 0.0016 32.5 3.4 57 221-282 64-124 (307)
114 PLN02602 lactate dehydrogenase 23.7 58 0.0012 34.0 2.5 57 221-282 101-159 (350)
115 TIGR01771 L-LDH-NAD L-lactate 23.6 53 0.0011 33.4 2.2 57 221-282 60-118 (299)
116 PRK11199 tyrA bifunctional cho 23.4 7.9E+02 0.017 25.7 11.0 80 130-234 71-151 (374)
117 PF09373 PMBR: Pseudomurein-bi 23.3 1.2E+02 0.0025 20.0 3.1 26 83-108 2-27 (33)
118 PF11906 DUF3426: Protein of u 23.2 2.7E+02 0.0059 24.7 6.6 59 417-475 69-136 (149)
119 PF08262 Lem_TRP: Leucophaea m 22.7 34 0.00073 16.4 0.2 7 26-32 3-9 (10)
120 PF09587 PGA_cap: Bacterial ca 22.6 2.8E+02 0.0061 27.0 7.1 64 224-302 182-245 (250)
121 COG0486 ThdF Predicted GTPase 22.2 1.9E+02 0.004 31.3 5.9 47 215-275 286-332 (454)
122 PF08044 DUF1707: Domain of un 21.6 1.4E+02 0.003 22.1 3.5 32 73-104 11-42 (53)
123 PRK10378 inactive ferrous ion 21.6 3E+02 0.0064 29.1 7.2 44 420-475 53-96 (375)
124 PRK01008 queuine tRNA-ribosylt 21.5 1.2E+02 0.0027 31.9 4.4 75 23-104 76-186 (372)
125 PF09912 DUF2141: Uncharacteri 21.3 2.4E+02 0.0051 24.2 5.5 62 422-488 1-67 (112)
126 COG0157 NadC Nicotinate-nucleo 21.1 1.2E+02 0.0026 30.6 3.9 27 55-81 199-226 (280)
127 TIGR02231 conserved hypothetic 21.0 3E+02 0.0065 30.3 7.6 57 417-475 443-516 (525)
128 PF03358 FMN_red: NADPH-depend 21.0 1.9E+02 0.0042 25.4 5.1 41 212-263 57-97 (152)
129 PF14079 DUF4260: Domain of un 20.4 52 0.0011 28.4 1.1 16 363-378 94-110 (113)
130 PF13598 DUF4139: Domain of un 20.3 2.9E+02 0.0063 27.9 6.9 57 417-475 243-313 (317)
131 smart00237 Calx_beta Domains i 20.2 4.7E+02 0.01 21.1 7.3 51 419-475 19-73 (90)
No 1
>PLN03080 Probable beta-xylosidase; Provisional
Probab=100.00 E-value=3.1e-111 Score=941.26 Aligned_cols=507 Identities=47% Similarity=0.903 Sum_probs=433.4
Q ss_pred CCCccCCCCccCccCHHHHHHHhhhcCCCCcEEEcCchhhhhhhhcccccCChHHHHHHHHHcCCCCcCchhHHHHHHHH
Q 010126 1 MCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCGPFLAIHTEGA 80 (517)
Q Consensus 1 M~sYn~ing~pa~~s~~ll~~lLR~e~gF~G~ViSD~~~m~~~~~~~~~~~~~~ea~~~al~AG~D~~~~~~~~~~l~~a 80 (517)
|||||++||+|||+|++||++ ||+||||+|+|||||++|..+...|++..+.++++++||+||+||+|...+.+.+.+|
T Consensus 263 M~sYn~vnG~Pa~~s~~lL~~-LR~ewGF~G~VvSD~~a~~~~~~~~~~~~~~~ea~~~Al~AG~Dl~~~~~~~~~l~~a 341 (779)
T PLN03080 263 MCSYNQVNGVPACARKDLLQK-ARDEWGFQGYITSDCDAVATIFEYQTYTKSPEDAVADVLKAGMDINCGSYMLRHTQSA 341 (779)
T ss_pred EeCCcCcCCccccCCHHHHHH-HHHHhCcCCeEecchHHHHHhhhcccccCCHHHHHHHHHHcCCCcccCchhHHHHHHH
Confidence 999999999999999999986 9999999999999999999998877777788999999999999999988777889999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhcCceeeccCCCccCccCCCCC
Q 010126 81 VRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHH 160 (517)
Q Consensus 81 v~~g~i~~~~id~sv~RIL~~K~~~Gl~~~~p~~~~~~~~~~~~~~~~~~~~la~~~a~~sivLLKN~~~~LPL~~~~~~ 160 (517)
|++|++++++||+|++|||++|+++|+|+.++...++.+.....+++++|+++|+++|++|||||||++++|||++.+.+
T Consensus 342 v~~G~i~e~~ID~av~RiL~~k~rlGlfd~~~~~~~~~~~~~~~v~~~~h~~lA~eaA~~siVLLKN~~~~LPL~~~~~~ 421 (779)
T PLN03080 342 IEKGKVQEEDIDRALFNLFSVQLRLGLFDGDPRNGWYGKLGPNNVCTKEHRELALEAARQGIVLLKNDKKFLPLNKSEVS 421 (779)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhCCCcCCCcccccccccccccCCHHHHHHHHHHHHhCEEEEecCCCCCCCCCCCCC
Confidence 99999999999999999999999999999444333344444566789999999999999999999999999999876557
Q ss_pred eEEEECCCCCccccccccccccCCccCCHHHHHHhhh-ceeeeccCCccccCCcccHHHHHHHhhcCCEEEEEecCCCcc
Q 010126 161 TVAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYA-KTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSI 239 (517)
Q Consensus 161 ~v~vig~~a~~~~~~~G~~~~~~~~~~s~~~~l~~~~-~~~y~~g~~~~~~~~~~~~~~a~~~a~~aD~vIv~~g~~~~~ 239 (517)
+|+||||+++....++|+|++.+++..+++++|+++. .+.|..||....+.+...+++++++|++||+|||++|.+...
T Consensus 422 ~IaViGp~A~~~~~~~g~~~~~~~~~~t~~~gl~~~~~~~~y~~g~~~~~~~~~~~~~~A~~~A~~aD~vIv~~G~~~~~ 501 (779)
T PLN03080 422 SLAIIGPMANDPYNLGGDYTGVPCQPTTLFKGLQAYVKKTSFAAGCKDVSCNSDTGFGEAIAIAKRADFVVVVAGLDLSQ 501 (779)
T ss_pred EEEEECCCCCCcCcCCCCCCCCCCCCCCHHHHHHHHhhcceeccCccccccCchhhHHHHHHHhccCCEEEEEeCCCccc
Confidence 9999999999888778889888888899999999975 466888886444444567889999999999999999998888
Q ss_pred ccccCCCCCCCCChhHHHHHHHHHHhCCCCEEEEEecCceeeccCcCCCCCccEEEEecCCCchhHHHHHHHHccCCCCC
Q 010126 240 EAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPG 319 (517)
Q Consensus 240 ~~Eg~Dr~~l~l~~~q~~li~~l~~~~~~pvVvVl~~g~Py~l~~~~~~~~v~ail~a~~~g~~~~~A~advL~G~~~Ps 319 (517)
++|+.||.+|.||+.|.+||++|++++++|+|||+++|+|++|+|+.+.++++|||++|+||+++|+|+||||||++|||
T Consensus 502 e~E~~Dr~~l~Lp~~Q~~LI~~va~~~~~pvIvVl~~g~Pv~l~~~~~~~~v~AIl~~~ypGqegG~AiAdvLfG~vnPs 581 (779)
T PLN03080 502 ETEDHDRVSLLLPGKQMDLISSVASVSKKPVVLVLTGGGPVDVSFAKQDPRIASILWIGYPGEVGGQALAEIIFGDYNPG 581 (779)
T ss_pred cccCCCcccccCCccHHHHHHHHHhhcCCCEEEEEeCCceeeccchhccCCCCeEEEccCCcccchhhhHHHHcCCCCCC
Confidence 99999999999999999999999976677999999999999999987667899999999999999999999999999999
Q ss_pred ccccceeccccccCCCCcccccccc--cCCCCCCccccCCCCccccCCcCCCCCCceeCCCcCCCCcccccccccccccc
Q 010126 320 GKLPMTWYPQDYVSRLPMTDMRMRA--ARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKN 397 (517)
Q Consensus 320 GkLPvT~~p~~~~~~~p~~~~~~~~--~~~~~~~~Yr~~~~~~~ypFG~GLSYTtf~~s~~~~~~~~~~~~~~~~~~~~~ 397 (517)
||||+||||+++ +++|++|+++++ ..+|++++||||+.+|+||||||||||||+|++++++...++.........+.
T Consensus 582 GkLPvT~~p~~~-~~~P~~~~~~~~~~~~~~pg~~Yr~~~~~p~ypFG~GLSYTtF~ys~~~~~~~~~~~~~~~~~~~~~ 660 (779)
T PLN03080 582 GRLPMTWYPESF-TAVPMTDMNMRADPSRGYPGRTYRFYTGDVVYGFGYGLSYTKFSYKILSAPKKLSLSRSSVQDSISR 660 (779)
T ss_pred CcCeeeeccccc-ccCCccccCcccccccCCCCCCceeCCCCcceeccCCCccceeEecccccccccccccccccccccc
Confidence 999999989887 789988887754 35588999999999999999999999999999997643211110000000000
Q ss_pred ccc-c-c---ccccccc-cCCCCCeeEEEEEEEEecCCcCcceEEEEEeeCCCCC-CCccccccccceeeecCCCeeEEE
Q 010126 398 TTI-S-S---NAIRVAH-TNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVR 470 (517)
Q Consensus 398 ~~~-~-~---~~~~~~~-~~~~~~~~~~v~v~V~NtG~~~G~evvQlY~~~~~~~-~~P~k~L~gF~kv~l~pGes~~v~ 470 (517)
... . . ..+.... ..|+.. .++|+|+|||||+++|+||||||+++|.++ .+|.|||+||+||+|+|||+++|+
T Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L~~Ges~~V~ 739 (779)
T PLN03080 661 KPLLQRRDELDYVQIEDIASCESL-RFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHTASGRSTETE 739 (779)
T ss_pred ccccccccccccccccccccCCCc-eEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEeeCCCCEEEEE
Confidence 000 0 0 0000000 123322 489999999999999999999999999876 899999999999999999999999
Q ss_pred EEeCCCCCceEEeCCCcEEecCeEEEEEEeCCCceEEEEE
Q 010126 471 LDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQA 510 (517)
Q Consensus 471 ~~~~~~~~~~~~d~~~~~~~~~G~y~~~vg~ss~~~~~~~ 510 (517)
|+|+.+++|++||+.++|++++|+|+|+||+++|++++++
T Consensus 740 ~~l~~~~~ls~~d~~~~~~v~~G~y~l~vG~~~~~~~~~~ 779 (779)
T PLN03080 740 IVVDPCKHLSVANEEGKRVLPLGDHVLMLGDLEHSLSIEI 779 (779)
T ss_pred EEeCchHHceEEcCCCcEEEeCccEEEEEeCCccceEEeC
Confidence 9999658999999999999999999999999999988763
No 2
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=100.00 E-value=3.4e-102 Score=871.21 Aligned_cols=470 Identities=30% Similarity=0.478 Sum_probs=400.5
Q ss_pred CCCccCCCCccCccCHHHHHHHhhhcCCCCcEEEcCchhhhhhhhcccccCChHHHHHHHHHcCCCCcCchh-HHHHHHH
Q 010126 1 MCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCGPF-LAIHTEG 79 (517)
Q Consensus 1 M~sYn~ing~pa~~s~~ll~~lLR~e~gF~G~ViSD~~~m~~~~~~~~~~~~~~ea~~~al~AG~D~~~~~~-~~~~l~~ 79 (517)
|||||.+||+|||+|+++|++|||+||||+|+|||||++|..+.. |++..+..+++++||+||+||+|.+. +.+.+.+
T Consensus 252 M~sy~~~~g~pa~~s~~ll~~lLR~e~GF~G~VvSD~~a~~~l~~-~~~~~~~~ea~~~Al~AG~Dl~m~~~~~~~~l~~ 330 (765)
T PRK15098 252 MVALNSLNGTPATSDSWLLKDLLRDQWGFKGITVSDHGAIKELIK-HGVAADPEDAVRLALKSGIDMSMSDEYYSKYLPG 330 (765)
T ss_pred EecccCcCCEeccCCHHHHHHHHHHhcCCCcEEEecchhHHHHHh-cccCCCHHHHHHHHHHcCCCcccCchhHHHHHHH
Confidence 999999999999999999999999999999999999999998874 66666888999999999999999654 4456899
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCC---CCCCCCCCHHHHHHHHHHHhcCceeeccCCCccCccC
Q 010126 80 AVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGN---LGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLST 156 (517)
Q Consensus 80 av~~g~i~~~~id~sv~RIL~~K~~~Gl~~~~p~~~~~~~---~~~~~~~~~~~~~la~~~a~~sivLLKN~~~~LPL~~ 156 (517)
|+++|.+++++||+||+|||++|+++|+|+ +|+...-.. .....+.+++|+++++++|++|||||||++++|||++
T Consensus 331 av~~G~i~~~~id~av~RIL~~k~~~glf~-~p~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~sivLLKN~~~~LPL~~ 409 (765)
T PRK15098 331 LVKSGKVTMAELDDAVRHVLNVKYDMGLFN-DPYSHLGPKESDPVDTNAESRLHRKEAREVARESLVLLKNRLETLPLKK 409 (765)
T ss_pred HHHcCcCCHHHHHHHHHHHHHHHHHhCCCC-CCccccccccccccccccCCHHHHHHHHHHHHhcEEEEecCCCCCCCCC
Confidence 999999999999999999999999999998 554221000 0112345789999999999999999999999999975
Q ss_pred CCCCeEEEECCCCCcccccccccc--ccCCccCCHHHHHHhhh----ceeeeccCCcccc-------------------C
Q 010126 157 LRHHTVAVIGPNSDVTVTMIGNYA--GVACGYTTPLQGISRYA----KTIHQAGCFGVAC-------------------N 211 (517)
Q Consensus 157 ~~~~~v~vig~~a~~~~~~~G~~~--~~~~~~~s~~~~l~~~~----~~~y~~g~~~~~~-------------------~ 211 (517)
. ++|+||||.++....+.|+|+ +.+.+.++++++|++.. .+.|..||..... .
T Consensus 410 ~--~~IaviG~~a~~~~~~~G~~s~~~~~~~~vt~~~gl~~~~~~~~~v~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (765)
T PRK15098 410 S--GTIAVVGPLADSQRDVMGSWSAAGVADQSVTVLQGIKNAVGDKAKVLYAKGANVTDDKGIIDFLNQYEEAVKVDPRS 487 (765)
T ss_pred C--CEEEEECCCcccccccCCCccccCccCCCCCHHHHHHHhhcCCceEEEecccccccCcccchhhhcccccccccccc
Confidence 3 699999999988765567664 55667799999999864 3568888742110 1
Q ss_pred CcccHHHHHHHhhcCCEEEEEecCCCccccccCCCCCCCCChhHHHHHHHHHHhCCCCEEEEEecCceeeccCcCCCCCc
Q 010126 212 GNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRI 291 (517)
Q Consensus 212 ~~~~~~~a~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~l~~~~~~pvVvVl~~g~Py~l~~~~~~~~v 291 (517)
....+++++++|++||+|||++|.+...++|+.||.+|.||+.|.+||+++++ .++|+|||+++|+||+|+|+. +.+
T Consensus 488 ~~~~~~~a~~~A~~aD~vIv~vg~~~~~~~E~~Dr~~l~Lp~~Q~~Li~~v~~-~~~~vVvVl~~g~P~~l~~~~--~~v 564 (765)
T PRK15098 488 PQAMIDEAVQAAKQADVVVAVVGEAQGMAHEASSRTDITIPQSQRDLIAALKA-TGKPLVLVLMNGRPLALVKED--QQA 564 (765)
T ss_pred chhhHHHHHHHHhcCCEEEEEEcCCCCccccCCCcccccCCHHHHHHHHHHHH-hCcCEEEEEeCCceeeccchh--hcC
Confidence 13457889999999999999999988889999999999999999999999987 578999999999999999873 489
Q ss_pred cEEEEecCCCchhHHHHHHHHccCCCCCccccceeccccccCCCCcccccccccCCC-----CCCccccCCC--CccccC
Q 010126 292 GAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGY-----PGRTYRFYKG--PVVFPF 364 (517)
Q Consensus 292 ~ail~a~~~g~~~~~A~advL~G~~~PsGkLPvT~~p~~~~~~~p~~~~~~~~~~~~-----~~~~Yr~~~~--~~~ypF 364 (517)
+|||++|++|+++|+|+|++|||++|||||||+|| |++. +++|.++........| .+.+||||+. +|+|||
T Consensus 565 ~AiL~a~~pG~e~G~AiAdvLfG~~nPsGkLPvT~-p~~~-~~~P~~~~~~~~~~~y~e~~~~~y~yry~d~~~~plypF 642 (765)
T PRK15098 565 DAILETWFAGTEGGNAIADVLFGDYNPSGKLPMSF-PRSV-GQIPVYYNHLNTGRPYNPDKPNKYTSRYFDEANGPLYPF 642 (765)
T ss_pred CeEEeecCCchhhhHHHHHHHcCCCCCCCCCccce-eCCC-CcCccccccCCCCCccccCcccccccceeccCCCccccc
Confidence 99999999999999999999999999999999997 8887 7788653211111112 1225899986 599999
Q ss_pred CcCCCCCCceeCCCcCCCCcccccccccccccccccccccccccccCCCCCeeEEEEEEEEecCCcCcceEEEEEeeCCC
Q 010126 365 GHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPA 444 (517)
Q Consensus 365 G~GLSYTtf~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~V~NtG~~~G~evvQlY~~~~~ 444 (517)
|||||||+|+|+++++.+ .. .. .+. +++|+|+|+|||+++|+||||||+++|.
T Consensus 643 G~GLSYT~F~ys~l~v~~--------------------~~--~~----~~~-~i~v~v~V~NtG~~~G~EVvQlYv~~~~ 695 (765)
T PRK15098 643 GYGLSYTTFTVSDVKLSS--------------------PT--MK----RDG-KVTASVTVTNTGKREGATVVQLYLQDVT 695 (765)
T ss_pred cCCCCCccEEeeccEecc--------------------cc--cc----CCC-eEEEEEEEEECCCCCccEEEEEeccCCC
Confidence 999999999999998642 00 01 112 6999999999999999999999999998
Q ss_pred CC-CCccccccccceeeecCCCeeEEEEEeCCCCCceEEeCCCcEEecCeEEEEEEeCCCceEE
Q 010126 445 GN-WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSIS 507 (517)
Q Consensus 445 ~~-~~P~k~L~gF~kv~l~pGes~~v~~~~~~~~~~~~~d~~~~~~~~~G~y~~~vg~ss~~~~ 507 (517)
++ .+|.|||+||+||+|+|||+++|+|+|+. ++|++||++++|++|+|+|+|+||.||++++
T Consensus 696 ~~~~~P~k~L~gF~Kv~L~pGes~~V~~~l~~-~~L~~~d~~~~~~~e~G~y~v~vG~ss~d~~ 758 (765)
T PRK15098 696 ASMSRPVKELKGFEKIMLKPGETQTVSFPIDI-EALKFWNQQMKYVAEPGKFNVFIGLDSARVK 758 (765)
T ss_pred CCCCCHHHhccCceeEeECCCCeEEEEEeecH-HHhceECCCCcEEEeCceEEEEEECCCCccc
Confidence 87 89999999999999999999999999999 9999999999999999999999999999885
No 3
>PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase(3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often C-terminal to the glycoside hydrolase family 3, N-terminal domain IPR001764 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3LK6_D 3NVD_B 3BMX_B 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A 1J8V_A 1IEX_A ....
Probab=100.00 E-value=1.8e-39 Score=316.83 Aligned_cols=215 Identities=41% Similarity=0.591 Sum_probs=153.5
Q ss_pred ceeeccCCCccCccCCCCCeEEEECCCCCcccccccccc-ccCCccCCHHHHHHhhhce---eeeccCCccccCCcccHH
Q 010126 142 IVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYA-GVACGYTTPLQGISRYAKT---IHQAGCFGVACNGNQLIG 217 (517)
Q Consensus 142 ivLLKN~~~~LPL~~~~~~~v~vig~~a~~~~~~~G~~~-~~~~~~~s~~~~l~~~~~~---~y~~g~~~~~~~~~~~~~ 217 (517)
||||||++++|||++.+. +|+|+|+.+.....++|++. ..+.+..+++++|++.+.. .+..++ ....+...++
T Consensus 1 ivLLKN~~~~LPL~~~~~-~v~viG~~~~~~~~~g~g~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~ 77 (227)
T PF01915_consen 1 IVLLKNEGNLLPLKPDKK-KVAVIGPNADNPVAQGGGSGNVNPGYGVTPLDALKQRFGNAGVVVPEGG--DAVDDDEGID 77 (227)
T ss_dssp -EEEEEGCG--SB-TTST-EEEEESTTTTSHHHCHBSTTSSTCSTHBHHHHHHHHHHHTTSEEEECCC--CCCCCCSCHH
T ss_pred CEEEEeCCCCCCCCCCCC-EEEEEcCccccccccCCcccccCccccccHHhhhccccCCCceEEeeec--cccccccchH
Confidence 799999999999988743 99999999998665555443 3445568899999998542 222111 1122467788
Q ss_pred HHHHHhhcCCEEEEEecCCCcccccc--------CCCCCCCCChhHHHHHHHHHHhCCCCEEEEEecCceeeccCcCCCC
Q 010126 218 AAEVAARQADATVLVMGLDQSIEAEF--------IDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDP 289 (517)
Q Consensus 218 ~a~~~a~~aD~vIv~~g~~~~~~~Eg--------~Dr~~l~l~~~q~~li~~l~~~~~~pvVvVl~~g~Py~l~~~~~~~ 289 (517)
++++.++++|+||+++|. .++|+ .||.++.+++.|.+||+++++. ++|+|||+++|+||++.++. +
T Consensus 78 ~~~~~~~~aD~vIv~~~~---~~~e~~~~~~~~~~~~~~~~l~~~q~~li~~v~~~-~~~~Ivvv~~~~P~~l~~~~--~ 151 (227)
T PF01915_consen 78 EAVAAAKEADVVIVFVGR---PSGEGNDNNTEGESDRSDLALPANQQELIKAVAAA-GKKVIVVVNSGNPYDLDPWE--D 151 (227)
T ss_dssp HHHHHHHCSSEEEEEEET---TSBCCCSS-EETTGSCSSTBCCCHHHHHHHHHHHH-HSCEEEEEE-SSGGCGHCCH--H
T ss_pred HHHHHhhcCCEEEEeccc---cccccccccccccCCcccccchhhHHHHHHHHHHh-cCCeEEEEecCCccccHHHH--h
Confidence 999999999999999982 22343 6999999999999999999875 47899999999999997764 4
Q ss_pred CccEEEEecCCCchhHHHHHHHHccCCCCCccccceeccccccCCCCcccccccccCCCCCCccccCCCCccccCCcCCC
Q 010126 290 RIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMS 369 (517)
Q Consensus 290 ~v~ail~a~~~g~~~~~A~advL~G~~~PsGkLPvT~~p~~~~~~~p~~~~~~~~~~~~~~~~Yr~~~~~~~ypFG~GLS 369 (517)
+++|||++|++|+++++|+||+|||+++|+||||+|| |++. +++|.+.... ..+++|+|....++||||||||
T Consensus 152 ~~~Ail~~~~~g~~~~~A~advL~G~~~PsGkLPvT~-p~~~-~~~p~~~~~~-----~~~~~~~~~~~~~~~~fG~GLs 224 (227)
T PF01915_consen 152 NVDAILAAYYPGQEGGEAIADVLFGDVNPSGKLPVTI-PKSM-EDIPAYYNYG-----MYGRTYDYDSGPPLYPFGYGLS 224 (227)
T ss_dssp C-SEEEEEES-GSBHHHHHHHHHTTSS---B--SS-B-ESSG-GGTTTTTTTS------THCCHHHHTTSESB-TT--B-
T ss_pred hhceEeeccccchHHHHHHHHHHcCCCCCCCCcceec-cCCh-hhCCCccccc-----ccCcccccCCCCccCcCCCCCE
Confidence 8999999999999999999999999999999999997 8876 6677532111 1234566777889999999999
Q ss_pred CCC
Q 010126 370 YTT 372 (517)
Q Consensus 370 YTt 372 (517)
||+
T Consensus 225 yt~ 227 (227)
T PF01915_consen 225 YTY 227 (227)
T ss_dssp TT-
T ss_pred eeC
Confidence 996
No 4
>COG1472 BglX Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]
Probab=99.96 E-value=7.9e-29 Score=258.31 Aligned_cols=158 Identities=29% Similarity=0.483 Sum_probs=134.7
Q ss_pred CCCccCCCCccCccCHHHHHHHhhhcCCCCcEEEcCchhhhhhhhcccccCChHHHHHHHHHcCCCCcCchh--HHHHHH
Q 010126 1 MCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCGPF--LAIHTE 78 (517)
Q Consensus 1 M~sYn~ing~pa~~s~~ll~~lLR~e~gF~G~ViSD~~~m~~~~~~~~~~~~~~ea~~~al~AG~D~~~~~~--~~~~l~ 78 (517)
|++||+|||.|||.|+++|++|||++|||+|+|||||++|+++...|+ +..+.+..+|+|||||+|.+. +...+.
T Consensus 213 hv~y~~id~~Pat~s~~ll~diLR~~~GF~G~ViSD~~~m~~~~~~~g---~~~d~~~~al~AG~Di~l~~~~~~~~~~~ 289 (397)
T COG1472 213 HVAYPKIDGTPATLSRKLLTDILRDEWGFDGVVISDDLSMKAIAAAHG---SAADRAEAALKAGVDIVLVCNELYEAYLV 289 (397)
T ss_pred eeeccCCCCCcccCCHHHHHHHHHhccCCCeEEEeecchhHHHHHhcc---CHHHHHHHHHhcCCCEEecCCchhHHHHH
Confidence 899999999999999999999999999999999999999999876443 566778889999999998643 223333
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhcCceeeccCCCccCccCCC
Q 010126 79 GAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLR 158 (517)
Q Consensus 79 ~av~~g~i~~~~id~sv~RIL~~K~~~Gl~~~~p~~~~~~~~~~~~~~~~~~~~la~~~a~~sivLLKN~~~~LPL~~~~ 158 (517)
.+...+ +++++++++++|||++|+++|+|+ +|+. .+|++++++++++|+|||||+..+|||+ +.
T Consensus 290 ~~~~~~-~~~~~i~~~v~Ril~~k~~~~~f~-~~~~-------------~~~~~~a~~~~~~~~~ll~n~~~~~p~~-~~ 353 (397)
T COG1472 290 VLELVG-LSEARLDDAVRRILRVKFKLGLFE-NPYS-------------SEHRALAREAARESIVLLKNDGGLLPLK-KS 353 (397)
T ss_pred HHHhcC-CcHHHHHHHHHHHHHHHHHhcccc-CCCc-------------hhhHHHHHHHHHHHHHHHHhccCCCccc-cc
Confidence 344445 999999999999999999999999 6542 1899999999999999999998899999 55
Q ss_pred CCeEEEECCCCCcccccccccc
Q 010126 159 HHTVAVIGPNSDVTVTMIGNYA 180 (517)
Q Consensus 159 ~~~v~vig~~a~~~~~~~G~~~ 180 (517)
.++|+++||.+... . |+|.
T Consensus 354 ~~~i~v~g~~~~~~-~--g~~~ 372 (397)
T COG1472 354 AKRIAVIGPYADDG-D--GGWS 372 (397)
T ss_pred cCceEEEccccccC-C--CCee
Confidence 57999999999887 4 5444
No 5
>PF00933 Glyco_hydro_3: Glycosyl hydrolase family 3 N terminal domain; InterPro: IPR001764 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase (3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often N-terminal to the glycoside hydrolase family 3, C-terminal domain IPR002772 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1Y65_A 2OXN_A 3GS6_A 1TR9_A 3GSM_A 3UT0_B 3RRX_A 3USZ_A 2X42_A 2X40_A ....
Probab=99.85 E-value=4.1e-22 Score=202.22 Aligned_cols=97 Identities=29% Similarity=0.387 Sum_probs=83.4
Q ss_pred CCCccCCCCccCccCHHHHHHHhhhcCCCCcEEEcCchhhhhhhhcccccCChHHHHHHHHHcCCCCcCchh----HHHH
Q 010126 1 MCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCGPF----LAIH 76 (517)
Q Consensus 1 M~sYn~ing~pa~~s~~ll~~lLR~e~gF~G~ViSD~~~m~~~~~~~~~~~~~~ea~~~al~AG~D~~~~~~----~~~~ 76 (517)
|||||+||+.|+|+|+.+|+++||+||||+|+|||||++|+++...+ +..+++++||+||+||+|.+. ..+.
T Consensus 199 M~sy~~id~~pas~s~~~l~~lLR~~lgf~G~viSD~~~m~~~~~~~----~~~~~~~~al~AG~D~~l~~~~~~~~~~~ 274 (299)
T PF00933_consen 199 MTSYPAIDGTPASLSPKILTDLLRNELGFDGVVISDDLEMGALSSNY----SIEEAAVRALNAGCDMLLVCNDPDDDIDA 274 (299)
T ss_dssp EE-STCCTTEEGGG-HHHHCCCCCCCS---SEEEESTTTSHHHHCCT----THHHHHHHHHHHT-SBEESSSSHHHHHHH
T ss_pred eeeccccCCccchhhhccchhhCcCcccCCCeEecccchHHHHHhcc----ccchHHHHHHhCccCeeCCCCchhHHHHH
Confidence 99999999999999999999999999999999999999999998633 367999999999999998643 2588
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHH
Q 010126 77 TEGAVRGGLLREEDVNLALAYTITV 101 (517)
Q Consensus 77 l~~av~~g~i~~~~id~sv~RIL~~ 101 (517)
+.++|++|.+++++||+|++|||++
T Consensus 275 l~~av~~g~i~~~~ld~av~RIl~~ 299 (299)
T PF00933_consen 275 LVEAVESGRISEERLDEAVRRILRL 299 (299)
T ss_dssp HHHHHHTTSSGHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999999999985
No 6
>PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A.
Probab=99.83 E-value=6.7e-21 Score=151.46 Aligned_cols=69 Identities=26% Similarity=0.463 Sum_probs=60.0
Q ss_pred eEEEEEeeCCCCC-CCccccccccceeeecCCCeeEEEEEeCCCCCceEEeCC-CcEEecCeEEEEEEeCCC
Q 010126 434 HTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKF-GIRRIPMGEHSLHIGDLK 503 (517)
Q Consensus 434 evvQlY~~~~~~~-~~P~k~L~gF~kv~l~pGes~~v~~~~~~~~~~~~~d~~-~~~~~~~G~y~~~vg~ss 503 (517)
||||||+++|.++ .+|.|+|+||+||+|+|||+++|+|+|+. ++|++||+. ++|++++|+|.|+||+||
T Consensus 1 EVvqlY~~~~~~~~~~P~~~L~gF~rv~l~pGes~~v~~~l~~-~~l~~~d~~~~~~~~~~G~~~l~vG~sS 71 (71)
T PF14310_consen 1 EVVQLYVSDPQSSVQRPVKQLVGFERVSLAPGESKTVSFTLPP-EDLAYWDEDAGKWVIEPGTYTLSVGDSS 71 (71)
T ss_dssp EEEEEEEEESSSSS---S-EEEEEEEEEE-TT-EEEEEEEEEH-HHHEEEETTTTCEEE-SEEEEEEEECCT
T ss_pred CEEEEEEEeCCCCCCCchheecceEEEEECCCCEEEEEEEECH-HHEeeEcCCCCEEEEeCCeEEEEEECCC
Confidence 8999999999987 89999999999999999999999999999 999999998 699999999999999987
No 7
>PRK05337 beta-hexosaminidase; Provisional
Probab=99.66 E-value=1.6e-16 Score=163.07 Aligned_cols=93 Identities=22% Similarity=0.138 Sum_probs=78.0
Q ss_pred CCC---ccCCCCccCccCHHHHHHHhhhcCCCCcEEEcCchhhhhhhhcccccCChHHHHHHHHHcCCCCcCchh---HH
Q 010126 1 MCS---YNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCGPF---LA 74 (517)
Q Consensus 1 M~s---Yn~ing~pa~~s~~ll~~lLR~e~gF~G~ViSD~~~m~~~~~~~~~~~~~~ea~~~al~AG~D~~~~~~---~~ 74 (517)
||| ||+||+.|||+|+++|++|||+||||+|+|||||+.|+++.. ..+..+++++||+|||||+|.+. ..
T Consensus 211 M~aHv~y~~id~~Pa~~S~~~l~~lLR~elGF~G~ViSD~l~m~a~~~----~~~~~~~~~~al~AG~Dl~l~~~~~~~~ 286 (337)
T PRK05337 211 MPAHVIYPQVDPRPAGFSRYWLQDILRQELGFDGVIFSDDLSMEGAAV----AGDYAERAQAALDAGCDMVLVCNNRDGA 286 (337)
T ss_pred EeCceeccCCCCCCCcCCHHHHHHHHHHhcCCCEEEEecchhhhhhhh----cCCHHHHHHHHHHcCCCEEeeCCCHHHH
Confidence 899 999999999999999999999999999999999999987642 23678899999999999987543 34
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHh
Q 010126 75 IHTEGAVRGGLLREEDVNLALAYTITVQMRL 105 (517)
Q Consensus 75 ~~l~~av~~g~i~~~~id~sv~RIL~~K~~~ 105 (517)
..+.+++.+ +.+.+|+++++.+.
T Consensus 287 ~~~~~~l~~--------~~~~~~~~~~~~~~ 309 (337)
T PRK05337 287 VSVLDNLSP--------PISAERLTRLYGRG 309 (337)
T ss_pred HHHHHHHHh--------hccHHHHHHHhccc
Confidence 455666644 77889999987664
No 8
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=96.29 E-value=0.022 Score=47.41 Aligned_cols=61 Identities=15% Similarity=0.283 Sum_probs=43.6
Q ss_pred eEEEEEEEEecCCc-CcceEEEEEeeCCCCCCCcccccccccee-eecCCCeeEEEEEeCCCCCceEEeCCCcEEecCeE
Q 010126 417 SLGLHVDIKNTGDM-AGTHTLLVFAKPPAGNWSPNKQLIGFKKV-HVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGE 494 (517)
Q Consensus 417 ~~~v~v~V~NtG~~-~G~evvQlY~~~~~~~~~P~k~L~gF~kv-~l~pGes~~v~~~~~~~~~~~~~d~~~~~~~~~G~ 494 (517)
.++++++|+|.|.. ++.-.|++|+.... .+-..| .|+||++++++|++.. . .+|.
T Consensus 20 ~~~i~~~V~N~G~~~~~~~~v~~~~~~~~---------~~~~~i~~L~~g~~~~v~~~~~~-~-------------~~G~ 76 (101)
T PF07705_consen 20 PVTITVTVKNNGTADAENVTVRLYLDGNS---------VSTVTIPSLAPGESETVTFTWTP-P-------------SPGS 76 (101)
T ss_dssp EEEEEEEEEE-SSS-BEEEEEEEEETTEE---------EEEEEESEB-TTEEEEEEEEEE--S-------------S-CE
T ss_pred EEEEEEEEEECCCCCCCCEEEEEEECCce---------eccEEECCcCCCcEEEEEEEEEe-C-------------CCCe
Confidence 69999999999987 56677888876432 155566 7999999999999997 3 4577
Q ss_pred EEEEEe
Q 010126 495 HSLHIG 500 (517)
Q Consensus 495 y~~~vg 500 (517)
|.|.+=
T Consensus 77 ~~i~~~ 82 (101)
T PF07705_consen 77 YTIRVV 82 (101)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 776553
No 9
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=95.70 E-value=0.11 Score=42.30 Aligned_cols=69 Identities=16% Similarity=0.186 Sum_probs=34.1
Q ss_pred EEEEEEEEecCCcC------cceEEEEEeeCCCCC-----CCccccccccceeeecCCCeeEEEEEeCCCCCceEEeCCC
Q 010126 418 LGLHVDIKNTGDMA------GTHTLLVFAKPPAGN-----WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFG 486 (517)
Q Consensus 418 ~~v~v~V~NtG~~~------G~evvQlY~~~~~~~-----~~P~k~L~gF~kv~l~pGes~~v~~~~~~~~~~~~~d~~~ 486 (517)
+.+.++|+|.++.+ .---.-+.+.++.+. ..-..=...++.+.|+|||+.+.+++++. .+++
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~-~~~~------ 74 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDL-KDLS------ 74 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS-----------
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECC-CCCC------
Confidence 56777778877642 111122444444432 11112245667889999999999999998 5544
Q ss_pred cEEecCeEEEEE
Q 010126 487 IRRIPMGEHSLH 498 (517)
Q Consensus 487 ~~~~~~G~y~~~ 498 (517)
+|+|++.
T Consensus 75 -----~G~Y~~~ 81 (82)
T PF12690_consen 75 -----PGEYTLE 81 (82)
T ss_dssp -----SEEEEEE
T ss_pred -----CceEEEe
Confidence 8999874
No 10
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=94.53 E-value=0.18 Score=40.31 Aligned_cols=64 Identities=20% Similarity=0.322 Sum_probs=36.1
Q ss_pred eEEEEEEEEecCCcCcceEEEEEeeCCCC-C--CCcccccccccee-eecCCCeeEEEEEeCCCCCceEEeCCCcEEecC
Q 010126 417 SLGLHVDIKNTGDMAGTHTLLVFAKPPAG-N--WSPNKQLIGFKKV-HVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPM 492 (517)
Q Consensus 417 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~-~--~~P~k~L~gF~kv-~l~pGes~~v~~~~~~~~~~~~~d~~~~~~~~~ 492 (517)
.++++++|+|.|..+-. -+.+=+..|.+ . ..|. ++ .|+|||+++++|.|..-.+ ..+
T Consensus 6 ~~~~~~tv~N~g~~~~~-~v~~~l~~P~GW~~~~~~~-------~~~~l~pG~s~~~~~~V~vp~~-----------a~~ 66 (78)
T PF10633_consen 6 TVTVTLTVTNTGTAPLT-NVSLSLSLPEGWTVSASPA-------SVPSLPPGESVTVTFTVTVPAD-----------AAP 66 (78)
T ss_dssp EEEEEEEEE--SSS-BS-S-EEEEE--TTSE---EEE-------EE--B-TTSEEEEEEEEEE-TT-------------S
T ss_pred EEEEEEEEEECCCCcee-eEEEEEeCCCCccccCCcc-------ccccCCCCCEEEEEEEEECCCC-----------CCC
Confidence 68999999999976532 24444455643 1 1221 22 7999999999999998221 247
Q ss_pred eEEEEEE
Q 010126 493 GEHSLHI 499 (517)
Q Consensus 493 G~y~~~v 499 (517)
|+|.|-+
T Consensus 67 G~y~v~~ 73 (78)
T PF10633_consen 67 GTYTVTV 73 (78)
T ss_dssp EEEEEEE
T ss_pred ceEEEEE
Confidence 9988765
No 11
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=90.32 E-value=2.8 Score=34.98 Aligned_cols=60 Identities=13% Similarity=0.106 Sum_probs=37.8
Q ss_pred eEEEEEEEEecCCcCcceEEEEEeeCCCCCCCccccccccceeeecCCCeeEEEEEeCCCCCceEE
Q 010126 417 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVV 482 (517)
Q Consensus 417 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv~l~pGes~~v~~~~~~~~~~~~~ 482 (517)
.....++|+|+|..+.+-- ++.+....... -.-+..-.|+||++.++++++........+
T Consensus 21 ~~~~~v~l~N~s~~p~~f~----v~~~~~~~~~~--~v~~~~g~l~PG~~~~~~V~~~~~~~~g~~ 80 (102)
T PF14874_consen 21 TYSRTVTLTNTSSIPARFR----VRQPESLSSFF--SVEPPSGFLAPGESVELEVTFSPTKPLGDY 80 (102)
T ss_pred EEEEEEEEEECCCCCEEEE----EEeCCcCCCCE--EEECCCCEECCCCEEEEEEEEEeCCCCceE
Confidence 5789999999999885433 33343111111 112334569999999999999932444443
No 12
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=89.30 E-value=0.86 Score=38.18 Aligned_cols=51 Identities=22% Similarity=0.205 Sum_probs=29.7
Q ss_pred EEEEEEEEecCCcCcceEEEEEeeCC---CC-C-CCccccccc-------cceeeecCCCeeEEEEE
Q 010126 418 LGLHVDIKNTGDMAGTHTLLVFAKPP---AG-N-WSPNKQLIG-------FKKVHVTAGALQSVRLD 472 (517)
Q Consensus 418 ~~v~v~V~NtG~~~G~evvQlY~~~~---~~-~-~~P~k~L~g-------F~kv~l~pGes~~v~~~ 472 (517)
-+++++|+|||+|+ ||+=-... .. . ......=.| =..|..+|||+++|++.
T Consensus 20 ~~~~l~V~NtGDRp----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T cd00407 20 EAVTLKVKNTGDRP----IQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELV 82 (101)
T ss_pred CEEEEEEEeCCCcc----eEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEE
Confidence 46899999999998 67611111 00 0 111111111 14567899999999875
No 13
>PRK13203 ureB urease subunit beta; Reviewed
Probab=88.59 E-value=0.98 Score=37.88 Aligned_cols=51 Identities=18% Similarity=0.124 Sum_probs=29.7
Q ss_pred EEEEEEEEecCCcCcceEEEEEeeCCC---C-C-CCcccc-------ccccceeeecCCCeeEEEEE
Q 010126 418 LGLHVDIKNTGDMAGTHTLLVFAKPPA---G-N-WSPNKQ-------LIGFKKVHVTAGALQSVRLD 472 (517)
Q Consensus 418 ~~v~v~V~NtG~~~G~evvQlY~~~~~---~-~-~~P~k~-------L~gF~kv~l~pGes~~v~~~ 472 (517)
-+++++|+|||+|+ ||+=-.... . . ...... .-+=..|..+|||+++|++-
T Consensus 20 ~~~~l~V~NtGDRP----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (102)
T PRK13203 20 ETVTLTVANTGDRP----IQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELV 82 (102)
T ss_pred CEEEEEEEeCCCCc----eEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 46899999999998 676111110 0 0 000011 11114567799999999875
No 14
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=88.46 E-value=1 Score=37.64 Aligned_cols=51 Identities=24% Similarity=0.164 Sum_probs=29.8
Q ss_pred EEEEEEEEecCCcCcceEEEEEeeCC---CCC--CCcccc-------ccccceeeecCCCeeEEEEE
Q 010126 418 LGLHVDIKNTGDMAGTHTLLVFAKPP---AGN--WSPNKQ-------LIGFKKVHVTAGALQSVRLD 472 (517)
Q Consensus 418 ~~v~v~V~NtG~~~G~evvQlY~~~~---~~~--~~P~k~-------L~gF~kv~l~pGes~~v~~~ 472 (517)
-+++++|+|||+|+ ||+=-... ... ...... .-+=..|..+||++++|++-
T Consensus 20 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T TIGR00192 20 KTVSVKVKNTGDRP----IQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELV 82 (101)
T ss_pred cEEEEEEEeCCCcc----eEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 46899999999997 67611110 000 000011 11124567899999999875
No 15
>PRK13202 ureB urease subunit beta; Reviewed
Probab=88.33 E-value=1.1 Score=37.73 Aligned_cols=51 Identities=22% Similarity=0.127 Sum_probs=29.6
Q ss_pred EEEEEEEEecCCcCcceEEEEEeeCCC---C-C-CCcccc-------ccccceeeecCCCeeEEEEE
Q 010126 418 LGLHVDIKNTGDMAGTHTLLVFAKPPA---G-N-WSPNKQ-------LIGFKKVHVTAGALQSVRLD 472 (517)
Q Consensus 418 ~~v~v~V~NtG~~~G~evvQlY~~~~~---~-~-~~P~k~-------L~gF~kv~l~pGes~~v~~~ 472 (517)
-+++++|+|||+|+ ||+=-.... . . ...... .-+=..|..+||++++|++.
T Consensus 21 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 83 (104)
T PRK13202 21 SRLQMRIINAGDRP----VQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLV 83 (104)
T ss_pred ceEEEEEEeCCCCc----eEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEE
Confidence 36899999999998 676111110 0 0 000011 11124567899999999876
No 16
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=87.95 E-value=1.1 Score=43.13 Aligned_cols=59 Identities=15% Similarity=0.172 Sum_probs=32.4
Q ss_pred EEEecCCcCcceEEEEEeeCCCCC---CCc--------cccccccceeeecCCCeeEEEEEeCCCCCceEEeCCCc
Q 010126 423 DIKNTGDMAGTHTLLVFAKPPAGN---WSP--------NKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGI 487 (517)
Q Consensus 423 ~V~NtG~~~G~evvQlY~~~~~~~---~~P--------~k~L~gF~kv~l~pGes~~v~~~~~~~~~~~~~d~~~~ 487 (517)
++-|.|. |.-+++||.+.+... ..| .+.+.++.++.|+||||- +|.+.---++|-+.|.
T Consensus 111 DIINRGG--G~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESi----TL~Pg~yH~Fw~e~g~ 180 (225)
T PF07385_consen 111 DIINRGG--GNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESI----TLPPGIYHWFWGEGGD 180 (225)
T ss_dssp EEEEEEE--S-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EE----EE-TTEEEEEEE-TTS
T ss_pred heeecCC--ceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeE----eeCCCCeeeEEecCCC
Confidence 5677665 778889998886543 222 456888999999999986 5666233445554433
No 17
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=86.68 E-value=1.2 Score=37.18 Aligned_cols=52 Identities=19% Similarity=0.131 Sum_probs=26.3
Q ss_pred eEEEEEEEEecCCcCcceEEEEEeeCCCC----C-CCccccccc-------cceeeecCCCeeEEEEE
Q 010126 417 SLGLHVDIKNTGDMAGTHTLLVFAKPPAG----N-WSPNKQLIG-------FKKVHVTAGALQSVRLD 472 (517)
Q Consensus 417 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~----~-~~P~k~L~g-------F~kv~l~pGes~~v~~~ 472 (517)
.-+++++|+|||+|+ ||+=-..... . ......=.| =..|..+||++++|++.
T Consensus 18 r~~~~l~V~N~GDRP----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIPaGTavRFEPG~~k~V~LV 81 (100)
T PF00699_consen 18 RERITLEVTNTGDRP----IQVGSHYHFFEVNPALEFDREAAYGMRLDIPAGTAVRFEPGDTKEVELV 81 (100)
T ss_dssp SEEEEEEEEE-SSS-----EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE-TT-EEEEEEE
T ss_pred CcEEEEEEEeCCCcc----eEEccccCHHHHhHHhhhhHHHhCCcccCcCCCCeEEECCCCcEEEEEE
Confidence 457999999999998 7762111110 0 000011111 14567899999999875
No 18
>PRK13201 ureB urease subunit beta; Reviewed
Probab=85.74 E-value=1.7 Score=38.14 Aligned_cols=51 Identities=20% Similarity=0.138 Sum_probs=30.1
Q ss_pred EEEEEEEEecCCcCcceEEEEEeeCCC---C-C-CCccccccc-------cceeeecCCCeeEEEEE
Q 010126 418 LGLHVDIKNTGDMAGTHTLLVFAKPPA---G-N-WSPNKQLIG-------FKKVHVTAGALQSVRLD 472 (517)
Q Consensus 418 ~~v~v~V~NtG~~~G~evvQlY~~~~~---~-~-~~P~k~L~g-------F~kv~l~pGes~~v~~~ 472 (517)
-+++++|+|||+|+ |||=-.... . . ..-...=.| =..|..+||++++|+|.
T Consensus 20 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 82 (136)
T PRK13201 20 PETVIEVENTGDRP----IQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQLV 82 (136)
T ss_pred CEEEEEEEeCCCcc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 46899999999998 676111110 0 0 000111111 14567899999999986
No 19
>PRK13204 ureB urease subunit beta; Reviewed
Probab=84.48 E-value=2 Score=38.68 Aligned_cols=51 Identities=18% Similarity=0.175 Sum_probs=29.9
Q ss_pred EEEEEEEEecCCcCcceEEEEEeeCC---CCC--CCccccccc-------cceeeecCCCeeEEEEE
Q 010126 418 LGLHVDIKNTGDMAGTHTLLVFAKPP---AGN--WSPNKQLIG-------FKKVHVTAGALQSVRLD 472 (517)
Q Consensus 418 ~~v~v~V~NtG~~~G~evvQlY~~~~---~~~--~~P~k~L~g-------F~kv~l~pGes~~v~~~ 472 (517)
-.++++|+|||+|+ |||=-... ... ......=.| =..|..+||++++|+|.
T Consensus 43 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 105 (159)
T PRK13204 43 PRTTLTVRNTGDRP----IQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKEVTLV 105 (159)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 46899999999997 67611111 000 100111111 24567899999999886
No 20
>PRK13205 ureB urease subunit beta; Reviewed
Probab=84.36 E-value=2 Score=38.49 Aligned_cols=51 Identities=20% Similarity=0.155 Sum_probs=30.4
Q ss_pred EEEEEEEEecCCcCcceEEEEEeeCCCC----C-CCccccccc-------cceeeecCCCeeEEEEE
Q 010126 418 LGLHVDIKNTGDMAGTHTLLVFAKPPAG----N-WSPNKQLIG-------FKKVHVTAGALQSVRLD 472 (517)
Q Consensus 418 ~~v~v~V~NtG~~~G~evvQlY~~~~~~----~-~~P~k~L~g-------F~kv~l~pGes~~v~~~ 472 (517)
-+++++|+|||+|+ |||=-....- . ......=.| =..|..+||++++|+|.
T Consensus 20 ~~i~L~V~NtGDRP----IQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFEPGe~ktV~LV 82 (162)
T PRK13205 20 EAKTIEIINTGDRP----VQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEPGDARTVNLV 82 (162)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHHHhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 46899999999998 6761111100 0 000111111 14567899999999986
No 21
>COG1470 Predicted membrane protein [Function unknown]
Probab=83.60 E-value=5.2 Score=42.63 Aligned_cols=71 Identities=18% Similarity=0.276 Sum_probs=46.6
Q ss_pred eEEEEEEEEecCCcCcceEEEEEeeCCCCCCCcccccccccee-eecCCCeeEEEEEeCCCCCceEEeCCCcEEecCeEE
Q 010126 417 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKV-HVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEH 495 (517)
Q Consensus 417 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv-~l~pGes~~v~~~~~~~~~~~~~d~~~~~~~~~G~y 495 (517)
..++.+.|.|+|..+=. =+-|=+..|.+ . .-+.-.| ++ .|+|||+++|.++|+.-.+ ..+|+|
T Consensus 398 e~~i~i~I~NsGna~Lt-dIkl~v~~Pqg--W-ei~Vd~~-~I~sL~pge~~tV~ltI~vP~~-----------a~aGdY 461 (513)
T COG1470 398 EKTIRISIENSGNAPLT-DIKLTVNGPQG--W-EIEVDES-TIPSLEPGESKTVSLTITVPED-----------AGAGDY 461 (513)
T ss_pred cceEEEEEEecCCCccc-eeeEEecCCcc--c-eEEECcc-cccccCCCCcceEEEEEEcCCC-----------CCCCcE
Confidence 46788888898865533 33455566654 1 1233444 55 5899999999999987211 147888
Q ss_pred EEEEeCCC
Q 010126 496 SLHIGDLK 503 (517)
Q Consensus 496 ~~~vg~ss 503 (517)
+|.+-..|
T Consensus 462 ~i~i~~ks 469 (513)
T COG1470 462 RITITAKS 469 (513)
T ss_pred EEEEEEee
Confidence 88887543
No 22
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=83.52 E-value=4.2 Score=34.26 Aligned_cols=51 Identities=10% Similarity=-0.029 Sum_probs=28.6
Q ss_pred EEEEEEEecCCcCcceEEEEEeeCCCCCCCccccccccceeeecCCCeeEEEEEeCCCCCceEEeCCCcEEecCeEEEEE
Q 010126 419 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLH 498 (517)
Q Consensus 419 ~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv~l~pGes~~v~~~~~~~~~~~~~d~~~~~~~~~G~y~~~ 498 (517)
.++++++|.|... .++ .+.. ......|.||++.+++|+-.. +|+|.++
T Consensus 44 ~v~l~~~N~~~~~-h~~---~i~~------------~~~~~~l~~g~~~~~~f~~~~----------------~G~y~~~ 91 (104)
T PF13473_consen 44 PVTLTFTNNDSRP-HEF---VIPD------------LGISKVLPPGETATVTFTPLK----------------PGEYEFY 91 (104)
T ss_dssp EEEEEEEE-SSS--EEE---EEGG------------GTEEEEE-TT-EEEEEEEE-S-----------------EEEEEB
T ss_pred eEEEEEEECCCCc-EEE---EECC------------CceEEEECCCCEEEEEEcCCC----------------CEEEEEE
Confidence 4678889998875 221 1111 123367999999999986443 6888887
Q ss_pred EeC
Q 010126 499 IGD 501 (517)
Q Consensus 499 vg~ 501 (517)
.+-
T Consensus 92 C~~ 94 (104)
T PF13473_consen 92 CTM 94 (104)
T ss_dssp -SS
T ss_pred cCC
Confidence 763
No 23
>PRK13198 ureB urease subunit beta; Reviewed
Probab=83.39 E-value=2.4 Score=38.18 Aligned_cols=51 Identities=20% Similarity=0.136 Sum_probs=30.0
Q ss_pred EEEEEEEEecCCcCcceEEEEEeeCC---CC-C-CCccccccc-------cceeeecCCCeeEEEEE
Q 010126 418 LGLHVDIKNTGDMAGTHTLLVFAKPP---AG-N-WSPNKQLIG-------FKKVHVTAGALQSVRLD 472 (517)
Q Consensus 418 ~~v~v~V~NtG~~~G~evvQlY~~~~---~~-~-~~P~k~L~g-------F~kv~l~pGes~~v~~~ 472 (517)
-+++++|+|||+|+ |||=-... .. . ......=.| =..|..+||++++|+|.
T Consensus 48 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 110 (158)
T PRK13198 48 PVTKVKVRNTGDRP----IQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDETEVPLI 110 (158)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeeCCCCeeEEEEE
Confidence 46899999999997 67611111 00 0 100111111 24567899999999886
No 24
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=81.16 E-value=20 Score=29.19 Aligned_cols=47 Identities=26% Similarity=0.366 Sum_probs=31.5
Q ss_pred EEEEEEEecCCcCcceEEEEEeeCCCCCCCccccccccceeeecCCCeeEEEEEeCC
Q 010126 419 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHV 475 (517)
Q Consensus 419 ~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv~l~pGes~~v~~~~~~ 475 (517)
.+.++++|.|+.+ -.++||-. .+....| .++.|+||+++++.+.+..
T Consensus 21 ~l~l~l~N~g~~~--~~~~v~~~-~y~~~~~-------~~~~v~ag~~~~~~w~l~~ 67 (89)
T PF05506_consen 21 NLRLTLSNPGSAA--VTFTVYDN-AYGGGGP-------WTYTVAAGQTVSLTWPLAA 67 (89)
T ss_pred EEEEEEEeCCCCc--EEEEEEeC-CcCCCCC-------EEEEECCCCEEEEEEeecC
Confidence 6889999986654 24455531 1111223 6788999999999998854
No 25
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=79.75 E-value=3.3 Score=29.43 Aligned_cols=43 Identities=14% Similarity=0.230 Sum_probs=26.0
Q ss_pred EEEEEecCCcCcceEEEEEeeCCCCC-CCccccccccceeeecCCCeeEEEEE
Q 010126 421 HVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLD 472 (517)
Q Consensus 421 ~v~V~NtG~~~G~evvQlY~~~~~~~-~~P~k~L~gF~kv~l~pGes~~v~~~ 472 (517)
+++++|+|+.+ |.+..-..+ + =....+.|-.|+|||+-+++++
T Consensus 1 ~F~~~N~g~~~------L~I~~v~tsCg---Ct~~~~~~~~i~PGes~~i~v~ 44 (45)
T PF07610_consen 1 TFEFTNTGDSP------LVITDVQTSCG---CTTAEYSKKPIAPGESGKIKVT 44 (45)
T ss_pred CEEEEECCCCc------EEEEEeeEccC---CEEeeCCcceECCCCEEEEEEE
Confidence 36889999865 223332222 1 0112245556999999998876
No 26
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=78.47 E-value=4.4 Score=33.86 Aligned_cols=52 Identities=19% Similarity=0.223 Sum_probs=30.4
Q ss_pred eEEEEEEEEecCCcCcceEEEE---E--eeCCCC-C-CCcc-----ccccccceeeecCCCeeEEEEE
Q 010126 417 SLGLHVDIKNTGDMAGTHTLLV---F--AKPPAG-N-WSPN-----KQLIGFKKVHVTAGALQSVRLD 472 (517)
Q Consensus 417 ~~~v~v~V~NtG~~~G~evvQl---Y--~~~~~~-~-~~P~-----k~L~gF~kv~l~pGes~~v~~~ 472 (517)
.-+++++|.|||+|+ +|+ | .....+ . +|.. -..-.=..|..+||+.++|++-
T Consensus 19 r~~~~i~V~NtGDRP----IQVGSHfHF~EvN~aL~FDR~~a~G~RLdIpagTAVRFEPG~~k~V~LV 82 (106)
T COG0832 19 RPTVTIEVANTGDRP----IQVGSHFHFFEVNRALSFDREKAYGMRLDIPAGTAVRFEPGDEKEVELV 82 (106)
T ss_pred CcceEEEEeecCCCc----eEeecceeehhhCcceeechhhhcceEecccCCceEeeCCCCccEEEEE
Confidence 356888899999997 675 1 111111 0 1110 0111224577899999999875
No 27
>COG1470 Predicted membrane protein [Function unknown]
Probab=78.18 E-value=3.1 Score=44.21 Aligned_cols=74 Identities=16% Similarity=0.207 Sum_probs=44.9
Q ss_pred eEEEEEEEEecCCcCcceEEEEEee-CCCC-CCCccccccccceeeecCCCeeEEEEEeCCCCCceEEeCCCcEEecCeE
Q 010126 417 SLGLHVDIKNTGDMAGTHTLLVFAK-PPAG-NWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGE 494 (517)
Q Consensus 417 ~~~v~v~V~NtG~~~G~evvQlY~~-~~~~-~~~P~k~L~gF~kv~l~pGes~~v~~~~~~~~~~~~~d~~~~~~~~~G~ 494 (517)
+..+.|++.|.|.-+ +-+-|=++ .|.. ..+=.-.=-.-.||.|+|||+++|++++.+.. ..+||+
T Consensus 285 t~sf~V~IeN~g~~~--d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~ps~-----------na~pG~ 351 (513)
T COG1470 285 TASFTVSIENRGKQD--DEYALELSGLPEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYPSL-----------NATPGT 351 (513)
T ss_pred ceEEEEEEccCCCCC--ceeEEEeccCCCCcceEEeeCceEEEEEEecCCCceEEEEEEecCC-----------CCCCCc
Confidence 578899999998765 11122222 2221 10000000112678899999999999999821 236899
Q ss_pred EEEEEeCCC
Q 010126 495 HSLHIGDLK 503 (517)
Q Consensus 495 y~~~vg~ss 503 (517)
|.+-|-.++
T Consensus 352 Ynv~I~A~s 360 (513)
T COG1470 352 YNVTITASS 360 (513)
T ss_pred eeEEEEEec
Confidence 998877654
No 28
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=77.98 E-value=4 Score=38.63 Aligned_cols=51 Identities=24% Similarity=0.235 Sum_probs=29.7
Q ss_pred EEEEEEEEecCCcCcceEEEEEeeCCCC---C--CCcccccccc-------ceeeecCCCeeEEEEE
Q 010126 418 LGLHVDIKNTGDMAGTHTLLVFAKPPAG---N--WSPNKQLIGF-------KKVHVTAGALQSVRLD 472 (517)
Q Consensus 418 ~~v~v~V~NtG~~~G~evvQlY~~~~~~---~--~~P~k~L~gF-------~kv~l~pGes~~v~~~ 472 (517)
-+++++|+|||+|+ +|+=-....- . ....+.=.|| ..|..+||++++|++-
T Consensus 129 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV 191 (208)
T PRK13192 129 PAVTLDVTNTGDRP----IQVGSHFHFFEVNRALRFDRAAAYGMRLDIPAGTAVRFEPGETKEVRLV 191 (208)
T ss_pred CEEEEEEEeCCCCc----eeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 46899999999998 6761111100 0 1111111121 4567799999999875
No 29
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=75.94 E-value=27 Score=29.68 Aligned_cols=59 Identities=22% Similarity=0.260 Sum_probs=30.2
Q ss_pred eEEEEEEEEecCCcCcceEEEEE-----eeCCCCC---CCc---c--ccccccceeeecCCCeeEEEEEeCC
Q 010126 417 SLGLHVDIKNTGDMAGTHTLLVF-----AKPPAGN---WSP---N--KQLIGFKKVHVTAGALQSVRLDIHV 475 (517)
Q Consensus 417 ~~~v~v~V~NtG~~~G~evvQlY-----~~~~~~~---~~P---~--k~L~gF~kv~l~pGes~~v~~~~~~ 475 (517)
..+.+++++|.|+.+=.-.+... ....... ..| . .....=.++.|+||++++|+++|+.
T Consensus 9 ~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~ 80 (112)
T PF06280_consen 9 KFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITP 80 (112)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE-
T ss_pred ceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEe
Confidence 46788999999986533322222 1110111 111 1 1222335667999999999999998
No 30
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=75.79 E-value=10 Score=32.80 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=37.7
Q ss_pred EEEEEEEecCCcCcceEEEEEeeCCCC--CCCcccccccccee-eecCCCeeEEEEEeCC
Q 010126 419 GLHVDIKNTGDMAGTHTLLVFAKPPAG--NWSPNKQLIGFKKV-HVTAGALQSVRLDIHV 475 (517)
Q Consensus 419 ~v~v~V~NtG~~~G~evvQlY~~~~~~--~~~P~k~L~gF~kv-~l~pGes~~v~~~~~~ 475 (517)
..+++|+|+|+ -.-.+|+.+..... ...+...|.-+=.. .|+||++++|.| +..
T Consensus 17 ~~~i~v~N~~~--~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv-~~~ 73 (122)
T PF00345_consen 17 SASITVTNNSD--QPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRV-YRG 73 (122)
T ss_dssp EEEEEEEESSS--SEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEE-EEC
T ss_pred EEEEEEEcCCC--CcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEE-Eec
Confidence 57899999999 45678888886211 13333345555555 589999999999 554
No 31
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=75.19 E-value=12 Score=32.64 Aligned_cols=57 Identities=25% Similarity=0.276 Sum_probs=35.8
Q ss_pred eEEEEEEEEecCCcCcceEEEEEeeCCCC-----------------C-CCccccccccce-eeecCCCeeEEEEEeCC
Q 010126 417 SLGLHVDIKNTGDMAGTHTLLVFAKPPAG-----------------N-WSPNKQLIGFKK-VHVTAGALQSVRLDIHV 475 (517)
Q Consensus 417 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~-----------------~-~~P~k~L~gF~k-v~l~pGes~~v~~~~~~ 475 (517)
+.++++.|+|+++-+- .+++++..-.. + ..+..+|....+ |.|+|+|+++|+|+|..
T Consensus 28 ~~~l~v~i~N~s~~~~--tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl~~~~sk~V~~~i~~ 103 (121)
T PF06030_consen 28 KQTLEVRITNNSDKEI--TVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTLPPNESKTVTFTIKM 103 (121)
T ss_pred EEEEEEEEEeCCCCCE--EEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEECCCCEEEEEEEEEc
Confidence 5678888888777543 33333332211 0 123444544444 68999999999999987
No 32
>PRK13986 urease subunit alpha; Provisional
Probab=74.13 E-value=5.7 Score=38.04 Aligned_cols=51 Identities=24% Similarity=0.194 Sum_probs=29.7
Q ss_pred EEEEEEEEecCCcCcceEEEEEeeCCC---CC--CCccccccc-------cceeeecCCCeeEEEEE
Q 010126 418 LGLHVDIKNTGDMAGTHTLLVFAKPPA---GN--WSPNKQLIG-------FKKVHVTAGALQSVRLD 472 (517)
Q Consensus 418 ~~v~v~V~NtG~~~G~evvQlY~~~~~---~~--~~P~k~L~g-------F~kv~l~pGes~~v~~~ 472 (517)
-+++++|+|||+|+ +|+=-.... .. ..-...=.| =..|..+||++++|++.
T Consensus 125 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV 187 (225)
T PRK13986 125 KAVSVKVKNVGDRP----VQVGSHFHFFEVNRCLEFDREKAFGKRLDIASGTAVRFEPGEEKSVELI 187 (225)
T ss_pred cEEEEEEEeCCCCc----eeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 46889999999998 676111110 00 000011111 14567899999999876
No 33
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=71.36 E-value=8.6 Score=33.76 Aligned_cols=53 Identities=26% Similarity=0.421 Sum_probs=31.2
Q ss_pred EEEEEEEecCCcC----cceEEEEEeeCCCCC----------C-----Cc--cccccccceeeecCCCeeEEEEEeCC
Q 010126 419 GLHVDIKNTGDMA----GTHTLLVFAKPPAGN----------W-----SP--NKQLIGFKKVHVTAGALQSVRLDIHV 475 (517)
Q Consensus 419 ~v~v~V~NtG~~~----G~evvQlY~~~~~~~----------~-----~P--~k~L~gF~kv~l~pGes~~v~~~~~~ 475 (517)
+|+|+.+|+|+.+ |.-.|- ..+.+. . -| ..+..+..|+ |.|||+.+|+|+.+.
T Consensus 26 ~vtv~l~h~G~lpk~~MgHN~Vl---~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkl-iggGes~svtF~~~~ 99 (125)
T TIGR02695 26 EFTVNLKHTGKLPKAVMGHNWVL---AKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKV-IGGGEKTSVTFDVSK 99 (125)
T ss_pred EEEEEEecCCcCchhccCccEEE---eccccHHHHHHHHHhcccccCccCCCCcceEEEccc-cCCCceEEEEEECCC
Confidence 5889999999877 444442 111110 0 11 1233333322 699999999999864
No 34
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=71.35 E-value=12 Score=31.59 Aligned_cols=58 Identities=12% Similarity=0.008 Sum_probs=34.4
Q ss_pred eEEEEEEEEecCCcCcceEEEEEe--eCCCCCCCcc-ccccccceeeecCCCeeEEEEEeCC
Q 010126 417 SLGLHVDIKNTGDMAGTHTLLVFA--KPPAGNWSPN-KQLIGFKKVHVTAGALQSVRLDIHV 475 (517)
Q Consensus 417 ~~~v~v~V~NtG~~~G~evvQlY~--~~~~~~~~P~-k~L~gF~kv~l~pGes~~v~~~~~~ 475 (517)
.++++++++|..+..-+. |++.+ ..-...+.+. .-.+-...+.|+|||+++++++|..
T Consensus 16 d~~v~v~~~N~~~~~l~~-v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p 76 (107)
T PF00927_consen 16 DFTVSVSFTNPSSEPLRN-VSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITP 76 (107)
T ss_dssp EEEEEEEEEE-SSS-EEC-EEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-H
T ss_pred CEEEEEEEEeCCcCcccc-ceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEEc
Confidence 699999999998877443 22222 2222223332 2234445567999999999999998
No 35
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=70.43 E-value=33 Score=28.42 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=29.4
Q ss_pred HHHHhhcCCEEEEEecCCCccccccCCCCCCCCChhHHHHHHHHHHhCCCCEEEE
Q 010126 219 AEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLV 273 (517)
Q Consensus 219 a~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~l~~~~~~pvVvV 273 (517)
..+..+++|+||++++.- ...-...+++.++..++|++.+
T Consensus 42 l~~~i~~aD~VIv~t~~v---------------sH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 42 LPSKIKKADLVIVFTDYV---------------SHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred HHHhcCCCCEEEEEeCCc---------------ChHHHHHHHHHHHHcCCcEEEE
Confidence 456788999999988632 2345567888888788888755
No 36
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=68.00 E-value=12 Score=38.80 Aligned_cols=53 Identities=17% Similarity=0.441 Sum_probs=28.9
Q ss_pred eEEEEEEEEecCCcCcceEEEE---------EeeCCCC--C-CCccccccccc------eeeecCCCeeEEEEEeC
Q 010126 417 SLGLHVDIKNTGDMAGTHTLLV---------FAKPPAG--N-WSPNKQLIGFK------KVHVTAGALQSVRLDIH 474 (517)
Q Consensus 417 ~~~v~v~V~NtG~~~G~evvQl---------Y~~~~~~--~-~~P~k~L~gF~------kv~l~pGes~~v~~~~~ 474 (517)
+++++++|||.|+.+ |+| ++.+-.. . ..|. .|.+-+ .-.|+||||++++++++
T Consensus 264 ~l~~~l~VtN~g~~p----v~LgeF~tA~vrFln~~v~~~~~~~P~-~l~A~~gL~vs~~~pI~PGETrtl~V~a~ 334 (381)
T PF04744_consen 264 TLTMTLTVTNNGDSP----VRLGEFNTANVRFLNPDVPTDDPDYPD-ELLAERGLSVSDNSPIAPGETRTLTVEAQ 334 (381)
T ss_dssp EEEEEEEEEEESSS-----BEEEEEESSS-EEE-TTT-SS-S---T-TTEETT-EEES--S-B-TT-EEEEEEEEE
T ss_pred EEEEEEEEEcCCCCc----eEeeeEEeccEEEeCcccccCCCCCch-hhhccCcceeCCCCCcCCCceEEEEEEee
Confidence 799999999999754 333 1111111 1 2333 555442 22489999999999985
No 37
>COG1160 Predicted GTPases [General function prediction only]
Probab=66.42 E-value=17 Score=38.94 Aligned_cols=47 Identities=23% Similarity=0.311 Sum_probs=32.8
Q ss_pred HHHHHHhhcCCEEEEEecCCCccccccCCCCCCCCChhHHHHHHHHHHhCCCCEEEEEec
Q 010126 217 GAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMC 276 (517)
Q Consensus 217 ~~a~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~l~~~~~~pvVvVl~~ 276 (517)
+++..++.+||++|+++.... ++.+...++.+-|. ..+||+|+|++-
T Consensus 75 ~Qa~~Ai~eADvilfvVD~~~------------Git~~D~~ia~~Lr-~~~kpviLvvNK 121 (444)
T COG1160 75 EQALIAIEEADVILFVVDGRE------------GITPADEEIAKILR-RSKKPVILVVNK 121 (444)
T ss_pred HHHHHHHHhCCEEEEEEeCCC------------CCCHHHHHHHHHHH-hcCCCEEEEEEc
Confidence 456778899999999985321 34455555666565 467899999873
No 38
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=66.13 E-value=52 Score=28.86 Aligned_cols=58 Identities=14% Similarity=0.023 Sum_probs=38.3
Q ss_pred EEEEEEEEecCCc----CcceEEEEEeeCCCCC-CCccccccccceeeecCCCeeEEEEEeCC
Q 010126 418 LGLHVDIKNTGDM----AGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHV 475 (517)
Q Consensus 418 ~~v~v~V~NtG~~----~G~evvQlY~~~~~~~-~~P~k~L~gF~kv~l~pGes~~v~~~~~~ 475 (517)
-.+.++++|+|+. .|-=-|++.-..-..- ....++-..=+.|.|+||++....|.+..
T Consensus 20 ~~~~l~~tN~s~~~C~l~G~P~v~~~~~~g~~~~~~~~~~~~~~~~vtL~PG~sA~a~l~~~~ 82 (131)
T PF14016_consen 20 RHATLTFTNTSDTPCTLYGYPGVALVDADGAPLGVPAVREGPPPRPVTLAPGGSAYAGLRWSN 82 (131)
T ss_pred cEEEEEEEECCCCcEEeccCCcEEEECCCCCcCCccccccCCCCCcEEECCCCEEEEEEEEec
Confidence 4789999999986 5666666662221100 11222223456789999999999998876
No 39
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=61.98 E-value=21 Score=32.12 Aligned_cols=59 Identities=20% Similarity=0.206 Sum_probs=37.4
Q ss_pred eEEEEEEEEecCCcCcceEE---EEEeeC-CCCC--CCcccccccccee------eecCCCeeEEEEEeCC
Q 010126 417 SLGLHVDIKNTGDMAGTHTL---LVFAKP-PAGN--WSPNKQLIGFKKV------HVTAGALQSVRLDIHV 475 (517)
Q Consensus 417 ~~~v~v~V~NtG~~~G~evv---QlY~~~-~~~~--~~P~k~L~gF~kv------~l~pGes~~v~~~~~~ 475 (517)
.+.|..+|+|+|+++=+++. .++-.. .... ..=..++.+|.+. .|+|||++..++.++.
T Consensus 63 ~~~v~g~V~N~g~~~i~~c~i~~~l~~~~~~~~n~~~~~~~~~~~f~~~~~~i~~~L~~~e~~~f~~~~~~ 133 (149)
T PF09624_consen 63 SFYVDGTVTNTGKFTIKKCKITVKLYNDKQVSGNKFKEIFYQQIPFVKKSIPIADNLKPGESKEFRFIFPY 133 (149)
T ss_pred EEEEEEEEEECCCCEeeEEEEEEEEEeCCCccCchhhhhhccccchhccceeHHhhcCcccceeEEEEecC
Confidence 68999999999998755442 123211 1111 2224455556322 2899999999999875
No 40
>PF06510 DUF1102: Protein of unknown function (DUF1102); InterPro: IPR009482 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=61.81 E-value=57 Score=29.44 Aligned_cols=54 Identities=11% Similarity=0.099 Sum_probs=33.5
Q ss_pred eEEEEEEEEecCCcCcceEEEEEeeCCCCC-CCcc-ccccccceeeecCCCeeEEEEEeCC
Q 010126 417 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPN-KQLIGFKKVHVTAGALQSVRLDIHV 475 (517)
Q Consensus 417 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~~-~~P~-k~L~gF~kv~l~pGes~~v~~~~~~ 475 (517)
.+.|.|+|+- ....|++|..+-.+. ..|- -.-+.-=...|.|||+..|=+.++.
T Consensus 69 ~~~IcV~I~s-----~~~~i~fy~~~~~~~~~~~~sd~a~~~i~ftv~~ge~v~VGm~~~~ 124 (146)
T PF06510_consen 69 DVPICVTISS-----SSDSIEFYTGDYDSYITGPGSDSARQSICFTVEPGESVKVGMIFDS 124 (146)
T ss_pred CceEEEEEec-----CCCcEEEEecCCCccccCCccccccceEEEEecCCCeeEEEEEEec
Confidence 3678888872 245789998654332 2221 1111112346899999999999997
No 41
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=57.31 E-value=75 Score=29.87 Aligned_cols=61 Identities=15% Similarity=0.079 Sum_probs=40.9
Q ss_pred eEEEEEEEEecCCcCcceEEEEEe-eCCCCC-----CCcccccccccee-eecCCCeeEEEEEeCCCCCceEEeCC
Q 010126 417 SLGLHVDIKNTGDMAGTHTLLVFA-KPPAGN-----WSPNKQLIGFKKV-HVTAGALQSVRLDIHVCKHLSVVDKF 485 (517)
Q Consensus 417 ~~~v~v~V~NtG~~~G~evvQlY~-~~~~~~-----~~P~k~L~gF~kv-~l~pGes~~v~~~~~~~~~~~~~d~~ 485 (517)
.++|+++|.|.|+-+...| ++.= +.|... +.+. .+. .|+||++.+-++.+.+ +....++-.
T Consensus 39 ~v~V~~~iyN~G~~~A~dV-~l~D~~fp~~~F~lvsG~~s------~~~~~i~pg~~vsh~~vv~p-~~~G~f~~~ 106 (181)
T PF05753_consen 39 DVTVTYTIYNVGSSAAYDV-KLTDDSFPPEDFELVSGSLS------ASWERIPPGENVSHSYVVRP-KKSGYFNFT 106 (181)
T ss_pred EEEEEEEEEECCCCeEEEE-EEECCCCCccccEeccCceE------EEEEEECCCCeEEEEEEEee-eeeEEEEcc
Confidence 6999999999999875444 4433 233221 2222 122 5999999999999998 666666544
No 42
>PF08530 PepX_C: X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain; InterPro: IPR013736 This domain is found at the C terminus of cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). The domain, which is a beta sandwich, is also found in serine peptidases belonging to MEROPS peptidase family S15: Xaa-Pro dipeptidyl-peptidases. Members of this entry, that are not characterised as peptidases, show extensive low-level similarity to the Xaa-Pro dipeptidyl-peptidases. ; GO: 0008239 dipeptidyl-peptidase activity; PDB: 2B4K_D 1RYY_F 2B9V_O 1NX9_B 3PUH_B 3I2I_A 3I2G_A 1JU4_A 3I2K_A 1L7R_A ....
Probab=56.67 E-value=33 Score=32.79 Aligned_cols=56 Identities=11% Similarity=0.172 Sum_probs=30.0
Q ss_pred eEEEEEEEEecCCcCcceEEEEEeeCCCCCCCccccccccce----------eeecCCCeeEEEEEeCC
Q 010126 417 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKK----------VHVTAGALQSVRLDIHV 475 (517)
Q Consensus 417 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~k----------v~l~pGes~~v~~~~~~ 475 (517)
..++++.|+=++. ++.=+|+|+--.|.+..+++-. |.-+ ..|.|||..+++|+|..
T Consensus 97 ~~~l~L~vs~~~~-d~~l~v~L~dv~pdG~~~~it~--G~l~~s~r~~~~~~~~~~pg~~~~~~i~L~p 162 (218)
T PF08530_consen 97 PPSLRLWVSSDAP-DADLFVRLSDVDPDGTSTLITR--GWLRASHRESDEKPEPLEPGEPYDVTIELQP 162 (218)
T ss_dssp EEEEEEEEEESSS-S-EEEEEEEEEETTSSEEEEEE--EEEEGGGSSCSSST----TT-EEEEEEEEEE
T ss_pred ceEEEEEEEecCC-CcEEEEEEEEeCCCCCEEEccc--eEEEcccccCccccccCCCCcEEEEEEEEch
Confidence 3556666654444 4466677776666653222211 2222 35799999999999887
No 43
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=56.20 E-value=33 Score=31.03 Aligned_cols=54 Identities=15% Similarity=0.257 Sum_probs=40.5
Q ss_pred eEEEEEEEEecCCcCcceEEEEEeeCCCCCCCccccccccceee-ecCCCeeEEEEEeCC
Q 010126 417 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVH-VTAGALQSVRLDIHV 475 (517)
Q Consensus 417 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv~-l~pGes~~v~~~~~~ 475 (517)
-+.|.++.+|+++.+ +--+-+..+. -..-.++++|..+. |+||++.++.+=|+-
T Consensus 86 mvsIql~ftN~s~~~---i~~I~i~~k~--l~~g~~i~~F~~I~~L~pg~s~t~~lgIDF 140 (145)
T PF14796_consen 86 MVSIQLTFTNNSDEP---IKNIHIGEKK--LPAGMRIHEFPEIESLEPGASVTVSLGIDF 140 (145)
T ss_pred cEEEEEEEEecCCCe---ecceEECCCC--CCCCcEeeccCcccccCCCCeEEEEEEEec
Confidence 378999999999854 4444555443 12335899999995 899999999998875
No 44
>cd00938 HisRS_RNA HisRS_RNA binding domain. This short RNA-binding domain is found at the N-terminus of HisRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=51.96 E-value=35 Score=24.42 Aligned_cols=31 Identities=13% Similarity=0.179 Sum_probs=25.8
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHhcC
Q 010126 77 TEGAVRGGLLREEDVNLALAYTITVQMRLGM 107 (517)
Q Consensus 77 l~~av~~g~i~~~~id~sv~RIL~~K~~~Gl 107 (517)
...-++...-+.+.|++.|..+|.+|..+|-
T Consensus 13 ~VRkLKa~KA~k~~i~~eV~~LL~LKaqlg~ 43 (45)
T cd00938 13 LVRKLKAEKASKEQIAEEVAKLLELKAQLGG 43 (45)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHhCC
Confidence 3445666778899999999999999999973
No 45
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=51.04 E-value=69 Score=29.58 Aligned_cols=41 Identities=27% Similarity=0.359 Sum_probs=27.1
Q ss_pred hhcCCEEEEEecCCCccccccCCCCCCCCChhHHHHHHHHHHhCCCCEEEEEecCceeec
Q 010126 223 ARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDV 282 (517)
Q Consensus 223 a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~l~~~~~~pvVvVl~~g~Py~l 282 (517)
..++|+|+|++|. +.|+.++.+..+..+.++ ++..|..++.
T Consensus 97 ~~~pdiv~vglG~-----------------PkQE~~~~~~~~~l~~~v--~~~vG~~~d~ 137 (171)
T cd06533 97 ASGADILFVGLGA-----------------PKQELWIARHKDRLPVPV--AIGVGGSFDF 137 (171)
T ss_pred HcCCCEEEEECCC-----------------CHHHHHHHHHHHHCCCCE--EEEeceeeEe
Confidence 3468999998884 348889988876543333 3334676765
No 46
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=50.38 E-value=84 Score=33.70 Aligned_cols=58 Identities=24% Similarity=0.246 Sum_probs=33.6
Q ss_pred ccHHHHHHHhhc--CCEEEEEecCCCccccccCCCCCCCCChhHHHHHHHHHHhCCCCEEEEEecCceeecc
Q 010126 214 QLIGAAEVAARQ--ADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVS 283 (517)
Q Consensus 214 ~~~~~a~~~a~~--aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~l~~~~~~pvVvVl~~g~Py~l~ 283 (517)
..+.+++..+.. .|+||++=|..+ ..+|. +=+...+++++++ ++.|+|.-+ |.=.|.+
T Consensus 179 ~~i~~al~~~~~~~~Dviii~RGGGS--------~eDL~-~Fn~e~v~~ai~~-~~~Pvis~I--GHE~D~t 238 (438)
T PRK00286 179 ASIVAAIERANARGEDVLIVARGGGS--------LEDLW-AFNDEAVARAIAA-SRIPVISAV--GHETDFT 238 (438)
T ss_pred HHHHHHHHHhcCCCCCEEEEecCCCC--------HHHhh-ccCcHHHHHHHHc-CCCCEEEec--cCCCCcc
Confidence 345555555554 599998655322 11111 1236789999986 678976442 6655543
No 47
>PF13157 DUF3992: Protein of unknown function (DUF3992)
Probab=49.74 E-value=1.4e+02 Score=24.90 Aligned_cols=67 Identities=13% Similarity=0.176 Sum_probs=42.9
Q ss_pred eEEEEEEEEecCCcCcceEEEEEeeCCCCCCCccccccccceeeecCCCeeEEEEEeCCCCCceEEeCCCcEEecCeEEE
Q 010126 417 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHS 496 (517)
Q Consensus 417 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv~l~pGes~~v~~~~~~~~~~~~~d~~~~~~~~~G~y~ 496 (517)
.+..++.|.|.+.....-.||++.... .. .-..+.||+|...++. +. +...+.+ .+ -....|+|.
T Consensus 25 ~i~gTi~V~n~~~~~~~itV~i~~~g~-----~v------~tftV~pG~S~S~T~~-~~-~sI~I~~-~~-~g~~~G~~C 89 (92)
T PF13157_consen 25 SISGTIYVYNDTGSGNPITVTILQNGT-----AV------NTFTVQPGNSRSFTVR-DF-QSIQIVT-TP-TGTIEGEFC 89 (92)
T ss_pred EEEEEEEEEECCCCCCCEEEEEEECCc-----EE------eEEEECCCceEEEEec-cc-eEEEEEe-CC-CcEEEEEEE
Confidence 578889999988877788899883321 11 3346899999866554 32 4455554 11 123458887
Q ss_pred EE
Q 010126 497 LH 498 (517)
Q Consensus 497 ~~ 498 (517)
+.
T Consensus 90 ~~ 91 (92)
T PF13157_consen 90 IT 91 (92)
T ss_pred EE
Confidence 64
No 48
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=48.52 E-value=17 Score=37.53 Aligned_cols=59 Identities=25% Similarity=0.339 Sum_probs=34.0
Q ss_pred HHHhhcCCEEEEEecCCCccccccCCCCCCCCC--hhHHHHHHHHHHhCCCCEEEEEecCceeec
Q 010126 220 EVAARQADATVLVMGLDQSIEAEFIDRAGLLLP--GRQQELVSRVAKASRGPVVLVLMCGGPVDV 282 (517)
Q Consensus 220 ~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~--~~q~~li~~l~~~~~~pvVvVl~~g~Py~l 282 (517)
-+.+++||+||++.|... .+|.+|.++--. .--.+++.++.+.+++..|+++. +||.|+
T Consensus 74 ~~~~~daDvVVitAG~~~---k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivv-sNPvDv 134 (323)
T TIGR01759 74 EEAFKDVDAALLVGAFPR---KPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVV-GNPANT 134 (323)
T ss_pred HHHhCCCCEEEEeCCCCC---CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHH
Confidence 356789999999998643 344555432111 01234555665543324555544 699976
No 49
>PRK13556 azoreductase; Provisional
Probab=47.89 E-value=47 Score=31.63 Aligned_cols=38 Identities=13% Similarity=0.165 Sum_probs=27.5
Q ss_pred HHHHHHHhhcCCEEEEEecCCCccccccCCCCCCCCChhHHHHHHHHHH
Q 010126 216 IGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAK 264 (517)
Q Consensus 216 ~~~a~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~l~~ 264 (517)
.++..+..++||.+|++.-. + ++.+|..-..+|+.+..
T Consensus 80 ~~~~~~~l~~AD~iVi~~P~---y--------n~~~Pa~LK~~iD~v~~ 117 (208)
T PRK13556 80 ADKYLNQFLEADKVVFAFPL---W--------NFTIPAVLHTYIDYLNR 117 (208)
T ss_pred HHHHHHHHHHCCEEEEeccc---c--------ccCCcHHHHHHHHHHhc
Confidence 34556788999999997632 2 46778777788888764
No 50
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=47.17 E-value=69 Score=28.64 Aligned_cols=27 Identities=11% Similarity=0.206 Sum_probs=21.1
Q ss_pred eeecCCCeeEEEEEeCCCCCceEEeCCCcEEecCeEEEEEEeC
Q 010126 459 VHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGD 501 (517)
Q Consensus 459 v~l~pGes~~v~~~~~~~~~~~~~d~~~~~~~~~G~y~~~vg~ 501 (517)
-.|+|||+++++|+.+. +|.|.++.+-
T Consensus 94 ~~I~pGet~TitF~adK----------------pG~Y~y~C~~ 120 (135)
T TIGR03096 94 EVIKAGETKTISFKADK----------------AGAFTIWCQL 120 (135)
T ss_pred eEECCCCeEEEEEECCC----------------CEEEEEeCCC
Confidence 35899999999999876 5777776653
No 51
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=46.46 E-value=68 Score=29.64 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=28.4
Q ss_pred cHHHHHHHh--hcCCEEEEEecCCCccccccCCCCCCCCChhHHHHHHHHHHhCCCCEEEEEecCceeec
Q 010126 215 LIGAAEVAA--RQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDV 282 (517)
Q Consensus 215 ~~~~a~~~a--~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~l~~~~~~pvVvVl~~g~Py~l 282 (517)
..+++++.+ .++|+++|++|. +.|..++.+..+..+.+ | ++..|..++.
T Consensus 89 ~~~~i~~~I~~~~pdiv~vglG~-----------------PkQE~~~~~~~~~l~~~-v-~i~vG~~~d~ 139 (172)
T PF03808_consen 89 EEEAIINRINASGPDIVFVGLGA-----------------PKQERWIARHRQRLPAG-V-IIGVGGAFDF 139 (172)
T ss_pred hHHHHHHHHHHcCCCEEEEECCC-----------------CHHHHHHHHHHHHCCCC-E-EEEECchhhh
Confidence 334444433 457888887773 34788888877655444 2 3333666654
No 52
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=46.42 E-value=31 Score=37.59 Aligned_cols=48 Identities=27% Similarity=0.263 Sum_probs=33.6
Q ss_pred HhhhcCCCCcEEEcCchhhhhhhhcccccCChHHHHHHHHHcCCCCcCc
Q 010126 22 TIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCG 70 (517)
Q Consensus 22 lLR~e~gF~G~ViSD~~~m~~~~~~~~~~~~~~ea~~~al~AG~D~~~~ 70 (517)
=|++=+||+|.|+||.++-+...-. ....++++.+.---.-|.|+.|.
T Consensus 74 Glh~f~~w~g~ilTDSGgfQv~s~g-~~~ltpe~~i~~Q~~iGsDI~~~ 121 (487)
T PRK13533 74 GLHKLLGFDGPIMTDSGSYQLLVYG-DVEVTNEEILEFQRKIGSDIGVP 121 (487)
T ss_pred CHHHHhCCCCCeEeccCCcEEEEcC-CccCCHHHHHHHHHHhCCCEEeE
Confidence 3667789999999999987654421 12246766655555689999874
No 53
>PRK13555 azoreductase; Provisional
Probab=45.97 E-value=47 Score=31.85 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=26.5
Q ss_pred HHHHHHHhhcCCEEEEEecCCCccccccCCCCCCCCChhHHHHHHHHHH
Q 010126 216 IGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAK 264 (517)
Q Consensus 216 ~~~a~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~l~~ 264 (517)
..+..+..+.||.+|++.-. + ++.+|..-..+|+.+..
T Consensus 80 ~~~~~~~~~~AD~lvi~~P~---~--------n~~~Pa~LK~~iD~v~~ 117 (208)
T PRK13555 80 VDQYLNQFLEADKVVFAFPL---W--------NFTVPAPLITYISYLSQ 117 (208)
T ss_pred HHHHHHHHHHcCEEEEEcCc---c--------cccchHHHHHHHHHHhc
Confidence 35567788999999996632 2 45677777777777663
No 54
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=44.86 E-value=1.3e+02 Score=32.45 Aligned_cols=57 Identities=16% Similarity=0.126 Sum_probs=32.4
Q ss_pred cHHHHHHHhhc---CCEEEEEecCCCccccccCCCCCCCCChhHHHHHHHHHHhCCCCEEEEEecCceeecc
Q 010126 215 LIGAAEVAARQ---ADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVS 283 (517)
Q Consensus 215 ~~~~a~~~a~~---aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~l~~~~~~pvVvVl~~g~Py~l~ 283 (517)
.+..++..+.. .|++||+=|..+. .|--. =+...+++++++ ++.|||.-+ |.=.|.+
T Consensus 174 ~i~~al~~~~~~~~~dviii~RGGGs~-----eDL~~----Fn~e~~~rai~~-~~~Pvis~i--GHe~D~t 233 (432)
T TIGR00237 174 SIVESIELANTKNECDVLIVGRGGGSL-----EDLWS----FNDEKVARAIFL-SKIPIISAV--GHETDFT 233 (432)
T ss_pred HHHHHHHHhhcCCCCCEEEEecCCCCH-----HHhhh----cCcHHHHHHHHc-CCCCEEEec--CcCCCcc
Confidence 34444444433 6999987653221 12111 246778999986 678887542 6655553
No 55
>PF09544 DUF2381: Protein of unknown function (DUF2381); InterPro: IPR011754 This family consists of at least 8 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=44.06 E-value=1.6e+02 Score=29.95 Aligned_cols=57 Identities=12% Similarity=0.113 Sum_probs=39.9
Q ss_pred eEEEEEEEEecCCcCcceEEEEEeeCCCCCCCccccccc-cceeeecCCCeeEEEEEeCC
Q 010126 417 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIG-FKKVHVTAGALQSVRLDIHV 475 (517)
Q Consensus 417 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L~g-F~kv~l~pGes~~v~~~~~~ 475 (517)
.+-|.|+|.|...-.-=..-+..+..+. +.+.|.+.= ++.=.|.||++.+|-++.+.
T Consensus 203 ~vav~v~l~N~~g~~PW~~~~A~L~g~~--G~~lr~~~V~~~~~~i~PG~~grVvVe~e~ 260 (289)
T PF09544_consen 203 WVAVVVTLRNLSGQPPWTPGEARLTGPS--GEPLRALAVRWQEGPIAPGGSGRVVVEAEA 260 (289)
T ss_pred eEEEEEEEECCCCCCCceeeEEEEECCC--CCcceeeeeecccCccCCCCceeEEEEecC
Confidence 6889999999444333334466666554 444454444 77778999999999999986
No 56
>PLN02303 urease
Probab=43.91 E-value=31 Score=39.81 Aligned_cols=51 Identities=20% Similarity=0.217 Sum_probs=30.3
Q ss_pred EEEEEEEEecCCcCcceEEEEEeeCCCC---C--CCcccccccc-------ceeeecCCCeeEEEEE
Q 010126 418 LGLHVDIKNTGDMAGTHTLLVFAKPPAG---N--WSPNKQLIGF-------KKVHVTAGALQSVRLD 472 (517)
Q Consensus 418 ~~v~v~V~NtG~~~G~evvQlY~~~~~~---~--~~P~k~L~gF-------~kv~l~pGes~~v~~~ 472 (517)
=+++++|+|||+|+ ||+=-....- . ..-...=.|| ..|..+|||+++|++.
T Consensus 150 ~~~~l~v~n~gdrp----iqvgSH~hf~e~N~aL~FdR~~a~G~rLdipaGtavRfePG~~~~V~lv 212 (837)
T PLN02303 150 KAVKLKVTNTGDRP----IQVGSHYHFIETNPYLVFDRRKAYGMRLNIPAGTAVRFEPGETKTVTLV 212 (837)
T ss_pred CeEEEEEeeCCCCc----eEeccccchHhcCchhhccHHHhcCccccCCCCCeEeECCCCeeEEEEE
Confidence 36899999999998 6761111110 0 1001111122 4577899999999986
No 57
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=43.37 E-value=39 Score=35.06 Aligned_cols=54 Identities=20% Similarity=0.447 Sum_probs=31.9
Q ss_pred eEEEEEEEEecCCcCcceEEEE---------EeeC---CCCC-CCcccccc--ccc---eeeecCCCeeEEEEEeCC
Q 010126 417 SLGLHVDIKNTGDMAGTHTLLV---------FAKP---PAGN-WSPNKQLI--GFK---KVHVTAGALQSVRLDIHV 475 (517)
Q Consensus 417 ~~~v~v~V~NtG~~~G~evvQl---------Y~~~---~~~~-~~P~k~L~--gF~---kv~l~pGes~~v~~~~~~ 475 (517)
.++++++|||.|+-+ |.| |+.. +... ..|. +|. |-. ...|+||||++|+++.+-
T Consensus 283 ~l~~~~~VTN~g~~~----vrlgEF~TA~vRFlN~~~v~~~~~~yP~-~lla~GL~v~d~~pI~PGETr~v~v~aqd 354 (399)
T TIGR03079 283 ALRVTMEITNNGDQV----ISIGEFTTAGIRFMNANGVRVLDPDYPR-ELLAEGLEVDDQSAIAPGETVEVKMEAKD 354 (399)
T ss_pred EEEEEEEEEcCCCCc----eEEEeEeecceEeeCcccccccCCCChH-HHhhccceeCCCCCcCCCcceEEEEEEeh
Confidence 689999999998754 222 1111 1111 2332 222 222 224899999999998764
No 58
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=43.35 E-value=1.9e+02 Score=23.89 Aligned_cols=57 Identities=11% Similarity=0.074 Sum_probs=33.5
Q ss_pred eEEEEEEEEecCCcCcceEEEEEeeCCCCC-CCccccccccceeeecCCCeeEEEEEeCC
Q 010126 417 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHV 475 (517)
Q Consensus 417 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~~-~~P~k~L~gF~kv~l~pGes~~v~~~~~~ 475 (517)
..++++.++|+.+.+-.=--.+|==+..+- ..|. ...++++.|.|+++.+|+..-+.
T Consensus 25 ~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~--~~~w~~~~l~~~~~~~l~~~ap~ 82 (94)
T PF07233_consen 25 LLRAQATLSNKSSKPLTLQYRFYWYDKQGLEVDPE--QSPWQSLTLPGGQTVTLSAVAPN 82 (94)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEEEE-TTS-EE--T--T---EEEEE-TT-EEEEEEE-SS
T ss_pred eEEEEEEEEECCCCcEEEEEEEEEECCCCCCcCCC--CCCCEEEEEcCCCEEEEEEECCC
Confidence 589999999999887554455555555543 2222 25789999999999998877654
No 59
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=42.92 E-value=16 Score=37.48 Aligned_cols=57 Identities=23% Similarity=0.230 Sum_probs=31.5
Q ss_pred HHhhcCCEEEEEecCCCccccccCCCCCCCCC--hhHHHHHHHHHHhCCCC-EEEEEecCceeec
Q 010126 221 VAARQADATVLVMGLDQSIEAEFIDRAGLLLP--GRQQELVSRVAKASRGP-VVLVLMCGGPVDV 282 (517)
Q Consensus 221 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~--~~q~~li~~l~~~~~~p-vVvVl~~g~Py~l 282 (517)
+.++++|+||++.|.+. .+|.+|.++--. .--.+++.++.+. .+| .++++ .+||.|+
T Consensus 56 ~~~~daDiVVitaG~~~---k~g~tR~dll~~N~~I~~~i~~~i~~~-a~~~~iviv-vtNPvDv 115 (313)
T TIGR01756 56 EAFKDIDCAFLVASVPL---KPGEVRADLLTKNTPIFKATGEALSEY-AKPTVKVLV-IGNPVNT 115 (313)
T ss_pred HHhCCCCEEEECCCCCC---CcCCCHHHHHHHHHHHHHHHHHHHHhh-CCCCeEEEE-eCCchHH
Confidence 46789999999988643 234455432100 0112444555543 334 44443 3799976
No 60
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=41.74 E-value=60 Score=21.05 Aligned_cols=26 Identities=15% Similarity=0.082 Sum_probs=22.8
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHH
Q 010126 74 AIHTEGAVRGGLLREEDVNLALAYTI 99 (517)
Q Consensus 74 ~~~l~~av~~g~i~~~~id~sv~RIL 99 (517)
...+.+...+|.|+++..++.-++||
T Consensus 5 L~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 5 LEKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 35678899999999999999998887
No 61
>PF06205 GT36_AF: Glycosyltransferase 36 associated family ; InterPro: IPR010403 This domain is found in the NvdB protein (P20471 from SWISSPROT), which is involved in the production of beta-(1-->2)-glucan.; PDB: 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A 3QG0_B 3AFJ_A ....
Probab=38.92 E-value=29 Score=28.56 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=17.5
Q ss_pred CCccccccccceeeecCCCeeEEEEEeCC
Q 010126 447 WSPNKQLIGFKKVHVTAGALQSVRLDIHV 475 (517)
Q Consensus 447 ~~P~k~L~gF~kv~l~pGes~~v~~~~~~ 475 (517)
..|.--|+ .++.|+|||+++|.|-+-.
T Consensus 58 ~Dpc~al~--~~v~L~PGe~~~v~f~lG~ 84 (90)
T PF06205_consen 58 LDPCAALQ--VRVTLEPGEEKEVVFLLGA 84 (90)
T ss_dssp S-EEEEEE--EEEEE-TT-EEEEEEEEEE
T ss_pred cCeEEEEE--EEEEECCCCEEEEEEEEEE
Confidence 34555555 3788999999999998754
No 62
>PLN00135 malate dehydrogenase
Probab=38.14 E-value=30 Score=35.46 Aligned_cols=58 Identities=16% Similarity=0.268 Sum_probs=32.5
Q ss_pred HHhhcCCEEEEEecCCCccccccCCCCCCCCC--hhHHHHHHHHHHhCCCCEEEEEecCceeec
Q 010126 221 VAARQADATVLVMGLDQSIEAEFIDRAGLLLP--GRQQELVSRVAKASRGPVVLVLMCGGPVDV 282 (517)
Q Consensus 221 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~--~~q~~li~~l~~~~~~pvVvVl~~g~Py~l 282 (517)
+..++||+||++.|.+. .+|.+|.++-.. .--.++++++.+..++..++++. +||.|+
T Consensus 54 ~~~~daDiVVitAG~~~---k~g~sR~dll~~N~~I~~~i~~~i~~~~~p~aivivv-sNPvDv 113 (309)
T PLN00135 54 EACKGVNIAVMVGGFPR---KEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVV-ANPANT 113 (309)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe-CCcHHH
Confidence 56789999999998653 234455432100 01234455565522344555544 699977
No 63
>PRK05442 malate dehydrogenase; Provisional
Probab=38.13 E-value=32 Score=35.50 Aligned_cols=56 Identities=21% Similarity=0.318 Sum_probs=31.4
Q ss_pred HHhhcCCEEEEEecCCCccccccCCCCCCCCChhH----HHHHHHHHHhCCCCEEEEEecCceeec
Q 010126 221 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 282 (517)
Q Consensus 221 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q----~~li~~l~~~~~~pvVvVl~~g~Py~l 282 (517)
+..++||+||++.|... .+|.+|.++- ..- .++.+++.+..++..++++. +||.|+
T Consensus 76 ~~~~daDiVVitaG~~~---k~g~tR~dll--~~Na~i~~~i~~~i~~~~~~~~iiivv-sNPvDv 135 (326)
T PRK05442 76 VAFKDADVALLVGARPR---GPGMERKDLL--EANGAIFTAQGKALNEVAARDVKVLVV-GNPANT 135 (326)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHHH--HHHHHHHHHHHHHHHHhCCCCeEEEEe-CCchHH
Confidence 56789999999988543 2344554321 111 23444555423233444444 699987
No 64
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=37.31 E-value=1.2e+02 Score=25.86 Aligned_cols=50 Identities=14% Similarity=0.190 Sum_probs=30.6
Q ss_pred EEEEEEEecCCcCcceEEEEEeeCCCCCCCccccc-cccceeeecCCCeeEEEEEeCC
Q 010126 419 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQL-IGFKKVHVTAGALQSVRLDIHV 475 (517)
Q Consensus 419 ~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L-~gF~kv~l~pGes~~v~~~~~~ 475 (517)
.-+++|.|...-+ ..+++=+..+ |.-+| .+...+.|+|||++++.|.|..
T Consensus 34 ~Y~lkl~Nkt~~~--~~~~i~~~g~-----~~~~l~~~~~~i~v~~g~~~~~~v~v~~ 84 (118)
T PF11614_consen 34 QYTLKLTNKTNQP--RTYTISVEGL-----PGAELQGPENTITVPPGETREVPVFVTA 84 (118)
T ss_dssp EEEEEEEE-SSS---EEEEEEEES------SS-EE-ES--EEEE-TT-EEEEEEEEEE
T ss_pred EEEEEEEECCCCC--EEEEEEEecC-----CCeEEECCCcceEECCCCEEEEEEEEEE
Confidence 5678899976654 3455555543 23455 5778889999999999988876
No 65
>PF00703 Glyco_hydro_2: Glycosyl hydrolases family 2; InterPro: IPR006102 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities: beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This entry describes the immunoglobulin-like beta-sandwich domain [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3FN9_C 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3GM8_A 3HN3_E 1BHG_A 2VZU_A 2X09_A ....
Probab=37.26 E-value=2e+02 Score=23.29 Aligned_cols=63 Identities=16% Similarity=0.190 Sum_probs=39.9
Q ss_pred eEEEEEEEEecCCcCcceEEEEEeeCCCCCCCccccccccceeeecCCCeeEEEEEeCCCCCceEEeC
Q 010126 417 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDK 484 (517)
Q Consensus 417 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv~l~pGes~~v~~~~~~~~~~~~~d~ 484 (517)
.+.+.+++.|.+.....-.+++.+..+..... -..-..+.+..++...+.+++.. .....|+.
T Consensus 19 ~v~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i-~~~~lW~p 81 (110)
T PF00703_consen 19 KVSVEVEVRNESNKPLDVTVRVRLFDPEGKKV----VTQSPVVSLSAPGQARITLTIEI-PNPKLWSP 81 (110)
T ss_dssp EEEEEEEEEEESSSSCEEEEEEEEEETTSEEE----EEEEEEEEECCCCEEEEEEEEEE-ESS-BBES
T ss_pred EEEEEEEEEeCCCCcEEEEEEEEEECCCCCEE----EEeeeEEEecCCceeEEEEEEEc-CCCCCcCC
Confidence 57777888999999988899998887764311 01112334566666666555555 44566666
No 66
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=37.06 E-value=31 Score=35.49 Aligned_cols=59 Identities=24% Similarity=0.344 Sum_probs=33.0
Q ss_pred HHHhhcCCEEEEEecCCCccccccCCCCCCCCCh--hHHHHHHHHHHhCCCCEEEEEecCceeec
Q 010126 220 EVAARQADATVLVMGLDQSIEAEFIDRAGLLLPG--RQQELVSRVAKASRGPVVLVLMCGGPVDV 282 (517)
Q Consensus 220 ~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~--~q~~li~~l~~~~~~pvVvVl~~g~Py~l 282 (517)
.+.++++|+||++.|.+. .+|.+|.++-... --.++..++.+..++..++++. +||.|+
T Consensus 71 ~~~~~~aDiVVitAG~~~---~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~ 131 (323)
T cd00704 71 EEAFKDVDVAILVGAFPR---KPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVV-GNPANT 131 (323)
T ss_pred HHHhCCCCEEEEeCCCCC---CcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEe-CCcHHH
Confidence 356789999999988643 2344554321110 1234455555532344555544 799986
No 67
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=36.62 E-value=91 Score=30.93 Aligned_cols=54 Identities=22% Similarity=0.249 Sum_probs=35.7
Q ss_pred EEEEEEEecCCcCcceEEEEEeeCCCCCCCccc----ccccccee-eecCCCeeEEEEEeC
Q 010126 419 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNK----QLIGFKKV-HVTAGALQSVRLDIH 474 (517)
Q Consensus 419 ~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k----~L~gF~kv-~l~pGes~~v~~~~~ 474 (517)
.++++|.|+|+. .-.||.++.+......|.. .+.-.==+ .|+||+++.|.+-..
T Consensus 45 ~~sl~l~N~~~~--p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~~ 103 (253)
T PRK15249 45 SVDVQLKNNDAI--PYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYN 103 (253)
T ss_pred ceeEEEEcCCCC--cEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEEc
Confidence 478899999986 5899999865432223322 13333334 489999999987654
No 68
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=36.53 E-value=1.4e+02 Score=30.31 Aligned_cols=57 Identities=23% Similarity=0.247 Sum_probs=32.8
Q ss_pred ccHHHHHHHhh------cCCEEEEEecCCCccccccCCCCCCCCChhHHHHHHHHHHhCCCCEEEEEecCceeec
Q 010126 214 QLIGAAEVAAR------QADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDV 282 (517)
Q Consensus 214 ~~~~~a~~~a~------~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~l~~~~~~pvVvVl~~g~Py~l 282 (517)
..+.++...+. ..|++|++=|..+ ..+|. +=+...+++++++ ++.|+|.-+ |.=.|.
T Consensus 58 ~~I~~al~~~~~~~~~~~~Dviii~RGGGs--------~eDL~-~FN~e~varai~~-~~~PvisaI--GHe~D~ 120 (319)
T PF02601_consen 58 ASIVSALRKANEMGQADDFDVIIIIRGGGS--------IEDLW-AFNDEEVARAIAA-SPIPVISAI--GHETDF 120 (319)
T ss_pred HHHHHHHHHHHhccccccccEEEEecCCCC--------hHHhc-ccChHHHHHHHHh-CCCCEEEec--CCCCCc
Confidence 34555555443 4789988655322 11111 1247789999986 678876442 655544
No 69
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=35.56 E-value=30 Score=36.65 Aligned_cols=56 Identities=16% Similarity=0.218 Sum_probs=30.9
Q ss_pred HHhhcCCEEEEEecCCCccccccCCCCCCCCChhHH----HHHHHHHHhCCCCEEEEEecCceeec
Q 010126 221 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQ----ELVSRVAKASRGPVVLVLMCGGPVDV 282 (517)
Q Consensus 221 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~----~li~~l~~~~~~pvVvVl~~g~Py~l 282 (517)
+..+++|+||++.|.+. .+|.+|.++- ..-. ++.+.+.+..++..++++ .+||.|+
T Consensus 116 ~~~kdaDIVVitAG~pr---kpg~tR~dll--~~N~~I~k~i~~~I~~~a~~~~iviV-VsNPvDv 175 (387)
T TIGR01757 116 EVFEDADWALLIGAKPR---GPGMERADLL--DINGQIFADQGKALNAVASKNCKVLV-VGNPCNT 175 (387)
T ss_pred HHhCCCCEEEECCCCCC---CCCCCHHHHH--HHHHHHHHHHHHHHHHhCCCCeEEEE-cCCcHHH
Confidence 56789999999988643 2344554321 1112 333444442323444443 4799987
No 70
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=35.42 E-value=34 Score=35.18 Aligned_cols=57 Identities=21% Similarity=0.272 Sum_probs=32.3
Q ss_pred HHHhhcCCEEEEEecCCCccccccCCCCCCCCChhH----HHHHHHHHHhCCCCEEEEEecCceeec
Q 010126 220 EVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 282 (517)
Q Consensus 220 ~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q----~~li~~l~~~~~~pvVvVl~~g~Py~l 282 (517)
-+..++||+||++.|... .+|.+|.++ -..- .++..++.+...+..++++. +||.|+
T Consensus 73 ~~~~~daDivvitaG~~~---k~g~tR~dl--l~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~ 133 (322)
T cd01338 73 NVAFKDADWALLVGAKPR---GPGMERADL--LKANGKIFTAQGKALNDVASRDVKVLVV-GNPCNT 133 (322)
T ss_pred HHHhCCCCEEEEeCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHhhCCCCeEEEEe-cCcHHH
Confidence 356789999999988643 234455432 1112 23445555433224554444 799976
No 71
>COG1361 S-layer domain [Cell envelope biogenesis, outer membrane]
Probab=35.22 E-value=1.1e+02 Score=33.22 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=37.8
Q ss_pred eEEEEEEEEecCCcCcceEEEEEeeCCCCCCCcccccc-ccceeeecCCCeeEEEEEeCC
Q 010126 417 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLI-GFKKVHVTAGALQSVRLDIHV 475 (517)
Q Consensus 417 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L~-gF~kv~l~pGes~~v~~~~~~ 475 (517)
+-++++.|+|+|...-+.+.-.|.. |..-..|..+.. -+---.|.|||+..|+|.+..
T Consensus 168 ~~~l~~~I~N~G~~~~~~v~l~~~~-~~~~~~~i~~~~~~~~i~~l~p~es~~v~f~v~~ 226 (500)
T COG1361 168 TNTLTLTIKNPGEGPAKNVSLSLES-PTSYLGPIYSANDTPYIGALGPGESVNVTFSVYA 226 (500)
T ss_pred ccEEEEEEEeCCcccccceEEEEeC-CcceeccccccccceeeeeeCCCceEEEEEEEEe
Confidence 4589999999999877766666643 111111222221 122235899999999999998
No 72
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=34.83 E-value=90 Score=28.68 Aligned_cols=52 Identities=19% Similarity=0.018 Sum_probs=31.8
Q ss_pred ccHHHHHHHhhcCCEEEEEecCCCccccccCCCCCCCCChhHHHHHHHHHH--hCCCCEEEEEec
Q 010126 214 QLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAK--ASRGPVVLVLMC 276 (517)
Q Consensus 214 ~~~~~a~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~l~~--~~~~pvVvVl~~ 276 (517)
+...+..+...+||.+|++.-.. +...|+.-..+++.+.. -.+||++++..+
T Consensus 57 ~~~~~~~~~i~~AD~iIi~tP~Y-----------~~s~~~~LKn~lD~~~~~~l~~K~~~~v~~~ 110 (174)
T TIGR03566 57 PDAERILQAIESADLLVVGSPVY-----------RGSYTGLFKHLFDLVDPNALIGKPVLLAATG 110 (174)
T ss_pred HHHHHHHHHHHHCCEEEEECCcC-----------cCcCcHHHHHHHHhcCHhHhCCCEEEEEEec
Confidence 34566778889999999965322 23556655666665421 135676665443
No 73
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=34.72 E-value=1.1e+02 Score=30.24 Aligned_cols=55 Identities=15% Similarity=0.211 Sum_probs=35.6
Q ss_pred EEEEEEEecCCcCcceEEEEEeeCCCCCCCcccc---cccccee-eecCCCeeEEEEEeCC
Q 010126 419 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQ---LIGFKKV-HVTAGALQSVRLDIHV 475 (517)
Q Consensus 419 ~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~---L~gF~kv-~l~pGes~~v~~~~~~ 475 (517)
.++++|.|+|+. .-.||.++.+......|... +.-.--+ .|+||+++.|.|-...
T Consensus 42 ~~sv~l~N~~~~--p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~~~ 100 (246)
T PRK09926 42 DVNVRLENKGNN--PLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKLMYTA 100 (246)
T ss_pred eEEEEEEeCCCC--cEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEEEeCC
Confidence 588999999986 58999999643322233221 2222223 4899999999877543
No 74
>PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=34.15 E-value=55 Score=37.05 Aligned_cols=49 Identities=24% Similarity=0.223 Sum_probs=34.2
Q ss_pred HHhhhcCCCCcEEEcCchhhhhhhhcccccCChHHHHHHHHHcCCCCcCc
Q 010126 21 NTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCG 70 (517)
Q Consensus 21 ~lLR~e~gF~G~ViSD~~~m~~~~~~~~~~~~~~ea~~~al~AG~D~~~~ 70 (517)
+=|++=|||+|.|+||.++-+.+.-. ....++++.+.---.-|.|+.|.
T Consensus 72 gGlH~f~~w~g~ilTDSGgfQv~s~g-~~~~tpe~~i~~Q~~iGsDI~~~ 120 (639)
T PRK13534 72 KGIHSLIGFDGPIMTDSGSFQLSVYG-DVEVTNREIIEFQEKIGVDIGTI 120 (639)
T ss_pred CChHHHhCCCCCeEecCCceeeeecC-ccccCHHHHHHHHHHhCCCEEEE
Confidence 34667789999999999987655432 12346766655555689999874
No 75
>cd09030 DUF1425 Putative periplasmic lipoprotein. This bacterial family of proteins contains members described as putative lipoproteins, some are also known as YcfL. The function of this family is unknown. Family members have also been annotated as predicted periplasmic lipoproteins (COG5633), and appear to contain an N-terminal membrane lipoprotein lipid attachment side (pfam08139), which is not included in this alignment model.
Probab=33.57 E-value=2.3e+02 Score=23.53 Aligned_cols=57 Identities=12% Similarity=0.097 Sum_probs=40.2
Q ss_pred eEEEEEEEEecCCcCcceEEEEEeeCCCCC-CCccccccccceeeecCCCeeEEEEEeCC
Q 010126 417 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHV 475 (517)
Q Consensus 417 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~~-~~P~k~L~gF~kv~l~pGes~~v~~~~~~ 475 (517)
..++++.|+|+.+.+-.=--.+|==+..+- ..|. .-.++.+.|.++|+.+|+..-+-
T Consensus 33 ~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~--~~~w~~l~l~~~~~~~l~~~ap~ 90 (101)
T cd09030 33 LLEAQATLSNTSSKPLTLQYRFYWYDAQGLEVEPE--QEPWQSLTLPGGQTVTLQAVAPN 90 (101)
T ss_pred eEEEEEEEEeCCCCCEEEEEEEEEECCCCCCcCCC--CCCCEEEEECCCCeEEEEEEcCC
Confidence 589999999998866444444454455543 2333 57889999999999988876553
No 76
>PF08885 GSCFA: GSCFA family; InterPro: IPR014982 This group of proteins are functionally uncharacterised. They have been named GSCFA after a highly conserved N-terminal motif in the alignment, they are functionally uncharacterised.
Probab=33.31 E-value=1.2e+02 Score=30.22 Aligned_cols=95 Identities=14% Similarity=0.145 Sum_probs=48.8
Q ss_pred cHHHHHHHhhcCCEEEEEecCCCccc---------------cccCCCCC-----CCCChhH---HHHHHHHHHhCCCCEE
Q 010126 215 LIGAAEVAARQADATVLVMGLDQSIE---------------AEFIDRAG-----LLLPGRQ---QELVSRVAKASRGPVV 271 (517)
Q Consensus 215 ~~~~a~~~a~~aD~vIv~~g~~~~~~---------------~Eg~Dr~~-----l~l~~~q---~~li~~l~~~~~~pvV 271 (517)
.+++..+.+++||++|+++|....+. +..+|+.- +...+.. .++++.|.+.+ |-+
T Consensus 91 ~l~~~~~~l~~ad~~iiTLGtaevw~~~~~g~vv~nc~k~p~~~F~~~~~~f~~ls~~ei~~~l~~~~~~l~~~n--P~~ 168 (251)
T PF08885_consen 91 HLEEVREALEEADVFIITLGTAEVWRDRETGRVVANCHKVPAGQFDPERYEFRNLSVEEILEDLEAIIDLLRSIN--PDI 168 (251)
T ss_pred HHHHHHHHHHhCCEEEEeCCcHHHheeCCCCEEEecCCCccccccchhhhhhccCCHHHHHHHHHHHHHHHHhhC--CCc
Confidence 34566788899999999999754332 11112211 2222222 23344554433 333
Q ss_pred EEEecCceeeccCcCCCCCccEEEEecCCCchhHHHHHHHHcc
Q 010126 272 LVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFG 314 (517)
Q Consensus 272 vVl~~g~Py~l~~~~~~~~v~ail~a~~~g~~~~~A~advL~G 314 (517)
=|+++=+|+-+..-. ..-+++ .+-..+.....++++-|..
T Consensus 169 kiilTVSPVrl~~T~--~~~d~~-~an~~SKs~Lr~a~~~l~~ 208 (251)
T PF08885_consen 169 KIILTVSPVRLIATF--RDRDGL-VANQYSKSTLRAAAHELVR 208 (251)
T ss_pred eEEEEeccchhhccc--ccccch-hhhhhhHHHHHHHHHHHHh
Confidence 233344687553211 112333 3444455677888888877
No 77
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=33.01 E-value=1.8e+02 Score=28.40 Aligned_cols=52 Identities=21% Similarity=0.176 Sum_probs=33.3
Q ss_pred EEEEEEEecCCcCcceEEEEEeeCCCCCCCccccccccc-eeeecCCCeeEEEEEeC
Q 010126 419 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFK-KVHVTAGALQSVRLDIH 474 (517)
Q Consensus 419 ~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~-kv~l~pGes~~v~~~~~ 474 (517)
.++++|+|+|+. .-.||..+.+.... +...+.-.= -..|+||+++.|.+-..
T Consensus 41 ~~si~v~N~~~~--p~lvQ~wv~~~~~~--~~~~fivtPPl~rl~pg~~q~vRii~~ 93 (230)
T PRK09918 41 EGSINVKNTDSN--PILLYTTLVDLPED--KSKLLLVTPPVARVEPGQSQQVRFILK 93 (230)
T ss_pred eEEEEEEcCCCC--cEEEEEEEecCCCC--CCCCEEEcCCeEEECCCCceEEEEEEC
Confidence 478899999976 47889998754322 111111111 23689999999987643
No 78
>PRK00170 azoreductase; Reviewed
Probab=32.53 E-value=89 Score=29.19 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=26.9
Q ss_pred cHHHHHHHhhcCCEEEEEecCCCccccccCCCCCCCCChhHHHHHHHHH
Q 010126 215 LIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVA 263 (517)
Q Consensus 215 ~~~~a~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~l~ 263 (517)
...+..+...+||.+|++.-.. ++.+|+.-..+|+.+.
T Consensus 76 ~~~~l~~~i~~AD~iV~~sP~y-----------~~~~pa~LK~~iDrv~ 113 (201)
T PRK00170 76 LSDELLEEFLAADKIVIAAPMY-----------NFSIPTQLKAYIDLIA 113 (201)
T ss_pred HHHHHHHHHHHCCEEEEeeccc-----------ccCCcHHHHHHHHhhe
Confidence 4556678889999999976322 3567777777777764
No 79
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=32.40 E-value=1.7e+02 Score=26.99 Aligned_cols=47 Identities=23% Similarity=0.298 Sum_probs=30.1
Q ss_pred HHHHHHHhhcCCEEEEEecCCCccccccCCCCCCCCChhHHHHHHHHHHhCCCCEEEEEe
Q 010126 216 IGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLM 275 (517)
Q Consensus 216 ~~~a~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~l~~~~~~pvVvVl~ 275 (517)
..+....+..+|.+|+++.... .+.....+.++.+.. .+.|+|+|++
T Consensus 84 ~~~~~~~~~~~D~ailvVda~~------------g~~~~~~~~l~~~~~-~~~p~ivvlN 130 (188)
T PF00009_consen 84 IKEMIRGLRQADIAILVVDAND------------GIQPQTEEHLKILRE-LGIPIIVVLN 130 (188)
T ss_dssp HHHHHHHHTTSSEEEEEEETTT------------BSTHHHHHHHHHHHH-TT-SEEEEEE
T ss_pred eecccceecccccceeeeeccc------------ccccccccccccccc-cccceEEeee
Confidence 4456677889999999986331 123344556666544 6788887776
No 80
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=32.08 E-value=13 Score=33.26 Aligned_cols=55 Identities=27% Similarity=0.471 Sum_probs=29.6
Q ss_pred HHhhcCCEEEEEecCCCccccccCCCCCCCCChhHH----HHHHHHHHhCCCCEEEEEecCceeec
Q 010126 221 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQ----ELVSRVAKASRGPVVLVLMCGGPVDV 282 (517)
Q Consensus 221 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~----~li~~l~~~~~~pvVvVl~~g~Py~l 282 (517)
+..+++|+||++.|.+. .+|.+|..+- ..-. ++.+++.+.+.. .++++. .+|.++
T Consensus 65 ~~~~~aDivvitag~~~---~~g~sR~~ll--~~N~~i~~~~~~~i~~~~p~-~~vivv-tNPvd~ 123 (141)
T PF00056_consen 65 EALKDADIVVITAGVPR---KPGMSRLDLL--EANAKIVKEIAKKIAKYAPD-AIVIVV-TNPVDV 123 (141)
T ss_dssp GGGTTESEEEETTSTSS---STTSSHHHHH--HHHHHHHHHHHHHHHHHSTT-SEEEE--SSSHHH
T ss_pred cccccccEEEEeccccc---cccccHHHHH--HHhHhHHHHHHHHHHHhCCc-cEEEEe-CCcHHH
Confidence 45679999999888643 3344443321 2222 344455554433 333333 689875
No 81
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=32.00 E-value=88 Score=24.99 Aligned_cols=39 Identities=13% Similarity=0.045 Sum_probs=27.4
Q ss_pred eeecCCCeeEEEEEeCCCCCceEEeCCCcEEecCeEEEEEEe
Q 010126 459 VHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIG 500 (517)
Q Consensus 459 v~l~pGes~~v~~~~~~~~~~~~~d~~~~~~~~~G~y~~~vg 500 (517)
-.|.||++..|+|.+.. +.+ +.+..|.+.+..| -++-+|
T Consensus 44 ~~l~~g~~~~v~i~f~~-~p~-~~e~~grf~lr~g-~tva~G 82 (87)
T cd03708 44 DVLRTGDRALVRFRFLY-HPE-YLREGQRLIFREG-RTKGVG 82 (87)
T ss_pred hhccCCCeEEEEEEECC-CCc-EEccCCeEEEECC-CcEEEE
Confidence 45899999999999654 456 4455567777666 455555
No 82
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=31.87 E-value=44 Score=34.25 Aligned_cols=57 Identities=21% Similarity=0.356 Sum_probs=33.3
Q ss_pred HHhhcCCEEEEEecCCCccccccCCCCCCCC--ChhHHHHHHHHHHhCCCCEEEEEecCceeec
Q 010126 221 VAARQADATVLVMGLDQSIEAEFIDRAGLLL--PGRQQELVSRVAKASRGPVVLVLMCGGPVDV 282 (517)
Q Consensus 221 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l--~~~q~~li~~l~~~~~~pvVvVl~~g~Py~l 282 (517)
+..++||+||++.|.+. ..|-+|.+|-- -.-..++.+++.+.+. ..++++. +||.++
T Consensus 65 ~~~~~aDiVvitAG~pr---KpGmtR~DLl~~Na~I~~~i~~~i~~~~~-d~ivlVv-tNPvD~ 123 (313)
T COG0039 65 EDLKGADIVVITAGVPR---KPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAIVLVV-TNPVDI 123 (313)
T ss_pred hhhcCCCEEEEeCCCCC---CCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CeEEEEe-cCcHHH
Confidence 45789999999998654 34445543310 0112345566665433 3454443 799987
No 83
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=31.85 E-value=1.3e+02 Score=28.76 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=28.9
Q ss_pred HHHHHHhhcCCEEEEEecCCCccccccCCCCCCCCChhHHHHHHHHHH
Q 010126 217 GAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAK 264 (517)
Q Consensus 217 ~~a~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~l~~ 264 (517)
++.++....||.+|++... + |+.+|..-...|..++.
T Consensus 79 d~l~~ef~aAD~vVi~~PM---~--------Nf~iPa~LK~yiD~i~~ 115 (202)
T COG1182 79 DKLLEEFLAADKVVIAAPM---Y--------NFNIPAQLKAYIDHIAV 115 (202)
T ss_pred HHHHHHHHhcCeEEEEecc---c--------ccCCCHHHHHHHHHHhc
Confidence 4556778899999997632 2 68899988899999885
No 84
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=30.98 E-value=66 Score=29.40 Aligned_cols=18 Identities=11% Similarity=0.100 Sum_probs=15.1
Q ss_pred eeeecCCCeeEEEEEeCC
Q 010126 458 KVHVTAGALQSVRLDIHV 475 (517)
Q Consensus 458 kv~l~pGes~~v~~~~~~ 475 (517)
-+.|+||+|.++++.++.
T Consensus 115 ~v~L~PG~s~elvv~ft~ 132 (158)
T COG4454 115 TVTLAPGKSGELVVVFTG 132 (158)
T ss_pred eeEeCCCCcEEEEEEecC
Confidence 347999999999988885
No 85
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=30.77 E-value=37 Score=36.62 Aligned_cols=58 Identities=17% Similarity=0.197 Sum_probs=31.6
Q ss_pred HHhhcCCEEEEEecCCCccccccCCCCCCCCCh--hHHHHHHHHHHhCCCCEEEEEecCceeec
Q 010126 221 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPG--RQQELVSRVAKASRGPVVLVLMCGGPVDV 282 (517)
Q Consensus 221 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~--~q~~li~~l~~~~~~pvVvVl~~g~Py~l 282 (517)
+..++||+||++.|.+. ++|.+|.++--.. --.++.+++.+..++..++++ .+||.|+
T Consensus 172 e~~kdaDiVVitAG~pr---kpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIV-VsNPvDv 231 (444)
T PLN00112 172 EVFQDAEWALLIGAKPR---GPGMERADLLDINGQIFAEQGKALNEVASRNVKVIV-VGNPCNT 231 (444)
T ss_pred HHhCcCCEEEECCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE-cCCcHHH
Confidence 56789999999988643 3455554321100 012344455441233455444 4799977
No 86
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=30.45 E-value=1.7e+02 Score=28.54 Aligned_cols=55 Identities=11% Similarity=0.106 Sum_probs=34.3
Q ss_pred EEEEEEEecCCcCcceEEEEEeeCCCCCCCccccccccce-eeecCCCeeEEEEEeCC
Q 010126 419 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKK-VHVTAGALQSVRLDIHV 475 (517)
Q Consensus 419 ~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~k-v~l~pGes~~v~~~~~~ 475 (517)
.++++|.|+|+. .-.||.++........+..-+.---= ..|+||++++|.+....
T Consensus 36 ~~si~i~N~~~~--p~LvQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~q~lRI~~~~ 91 (226)
T PRK15295 36 ESSINVENKDSK--ANLVQSWLSVVDPQVTNKQAFIITPPLFRLDAGQKNSIRVIRSG 91 (226)
T ss_pred eeEEEEEeCCCC--cEEEEEEEeCCCCCCCCCCCEEEcCCeEEECCCCceEEEEEECC
Confidence 588999999986 48899999764321111100111111 25899999999977553
No 87
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=30.41 E-value=73 Score=27.00 Aligned_cols=59 Identities=19% Similarity=0.168 Sum_probs=28.0
Q ss_pred eEEEEEEEEecCCcCcce-EEEEEeeCCCCC-CCccc----cccccceeeecCCCeeEEEEEeCC
Q 010126 417 SLGLHVDIKNTGDMAGTH-TLLVFAKPPAGN-WSPNK----QLIGFKKVHVTAGALQSVRLDIHV 475 (517)
Q Consensus 417 ~~~v~v~V~NtG~~~G~e-vvQlY~~~~~~~-~~P~k----~L~gF~kv~l~pGes~~v~~~~~~ 475 (517)
-+.|+|+|+|+|+-+-.- ..+..+.+..+. -.|.. ....+--..|+||++.+..+-+..
T Consensus 37 fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~v 101 (123)
T PF11611_consen 37 FVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEV 101 (123)
T ss_dssp EEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEE
T ss_pred EEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEE
Confidence 589999999998754321 012334344332 11211 111155568999999887665554
No 88
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=30.33 E-value=1.1e+02 Score=26.86 Aligned_cols=18 Identities=11% Similarity=0.095 Sum_probs=14.4
Q ss_pred HHHHHHhhcCCEEEEEec
Q 010126 217 GAAEVAARQADATVLVMG 234 (517)
Q Consensus 217 ~~a~~~a~~aD~vIv~~g 234 (517)
.++...++.+|++|+++.
T Consensus 3 ~~~~~~i~~aD~vl~ViD 20 (141)
T cd01857 3 RQLWRVVERSDIVVQIVD 20 (141)
T ss_pred HHHHHHHhhCCEEEEEEE
Confidence 456778899999998875
No 89
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=30.27 E-value=46 Score=34.28 Aligned_cols=58 Identities=22% Similarity=0.357 Sum_probs=30.7
Q ss_pred HHhhcCCEEEEEecCCCccccccCCCCCCCCChhH--HHHHHHHHHhCCCCEEEEEecCceeec
Q 010126 221 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ--QELVSRVAKASRGPVVLVLMCGGPVDV 282 (517)
Q Consensus 221 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q--~~li~~l~~~~~~pvVvVl~~g~Py~l 282 (517)
+..+++|+||++.|... .++.+|..+--.... .+++..+.+..+...++++. +||.++
T Consensus 74 ~~l~~aDiVI~tAG~~~---~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~ 133 (325)
T cd01336 74 EAFKDVDVAILVGAMPR---KEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVV-GNPANT 133 (325)
T ss_pred HHhCCCCEEEEeCCcCC---CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe-cCcHHH
Confidence 55679999999988643 223344321111011 23445555432334555544 689976
No 90
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=30.15 E-value=1.5e+02 Score=28.72 Aligned_cols=54 Identities=11% Similarity=0.168 Sum_probs=34.5
Q ss_pred EEEEEEEecCCcCcceEEEEEeeCCCCC-CCcccccccccee-eecCCCeeEEEEEeC
Q 010126 419 GLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKV-HVTAGALQSVRLDIH 474 (517)
Q Consensus 419 ~v~v~V~NtG~~~G~evvQlY~~~~~~~-~~P~k~L~gF~kv-~l~pGes~~v~~~~~ 474 (517)
.++++|+|+|+. .-.||.++.+.... ..+...+.-.=-+ .|+||+++.+.+-..
T Consensus 39 ~~sl~l~N~~~~--p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~ 94 (227)
T PRK15299 39 DASISISNSDNV--PYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRT 94 (227)
T ss_pred EEEEEEEeCCCC--cEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEEC
Confidence 588999999986 68999998753211 1111112222223 589999999987654
No 91
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=29.74 E-value=2.2e+02 Score=26.50 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=23.9
Q ss_pred hcCCEEEEEecCCCccccccCCCCCCCCChhHHHHHHHHHHhCCCCEEEEEecCceeec
Q 010126 224 RQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDV 282 (517)
Q Consensus 224 ~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~l~~~~~~pvVvVl~~g~Py~l 282 (517)
..+|+++|++|.+ .|+.++.+.....+.+ | ++..|.-+|.
T Consensus 99 s~~dil~VglG~P-----------------kQE~~~~~~~~~~~~~-v-~~gvGg~fd~ 138 (177)
T TIGR00696 99 SGAGIVFVGLGCP-----------------KQEIWMRNHRHLKPDA-V-MIGVGGSFDV 138 (177)
T ss_pred cCCCEEEEEcCCc-----------------HhHHHHHHhHHhCCCc-E-EEEeceeeee
Confidence 5688888888743 4778887775433322 2 2233666654
No 92
>TIGR03352 VI_chp_3 type VI secretion lipoprotein, VC_A0113 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=29.08 E-value=1.6e+02 Score=26.57 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=21.6
Q ss_pred ccccccceeeecCCCeeEEEEEeCC
Q 010126 451 KQLIGFKKVHVTAGALQSVRLDIHV 475 (517)
Q Consensus 451 k~L~gF~kv~l~pGes~~v~~~~~~ 475 (517)
..|.+-+.+.|.|||+++++++++.
T Consensus 80 ~~ll~~~e~~l~PG~~~~~~~~~~~ 104 (146)
T TIGR03352 80 DDLIEQDEIILLPGEKRKITITLDP 104 (146)
T ss_pred HHHhhcceEEECCCCeeEeeeecCC
Confidence 3577788889999999999999886
No 93
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=29.06 E-value=39 Score=34.33 Aligned_cols=57 Identities=19% Similarity=0.300 Sum_probs=32.4
Q ss_pred HHhhcCCEEEEEecCCCccccccCCCCCCCCCh--hHHHHHHHHHHhCCCCEEEEEecCceeec
Q 010126 221 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPG--RQQELVSRVAKASRGPVVLVLMCGGPVDV 282 (517)
Q Consensus 221 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~--~q~~li~~l~~~~~~pvVvVl~~g~Py~l 282 (517)
+.+++||+||++.|.+. .+|.+|.++-.-. --.++.+++.+. ....+++ +.++|.++
T Consensus 62 ~~l~~aDiVIitag~p~---~~~~~R~~l~~~n~~i~~~~~~~i~~~-~p~~~vi-v~sNP~d~ 120 (300)
T cd00300 62 ADAADADIVVITAGAPR---KPGETRLDLINRNAPILRSVITNLKKY-GPDAIIL-VVSNPVDI 120 (300)
T ss_pred HHhCCCCEEEEcCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEE-EccChHHH
Confidence 46789999999998653 2344554322111 123445555543 3344444 44799976
No 94
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=28.99 E-value=48 Score=34.15 Aligned_cols=56 Identities=21% Similarity=0.358 Sum_probs=31.5
Q ss_pred HHhhcCCEEEEEecCCCccccccCCCCCCCCChhH----HHHHHHHHHhCCCCEEEEEecCceeec
Q 010126 221 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 282 (517)
Q Consensus 221 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q----~~li~~l~~~~~~pvVvVl~~g~Py~l 282 (517)
+.++++|+||++.|.+. .++.+|.++ -..- .++.+++.+..++..|+++. +||.|+
T Consensus 71 ~~~~~aDiVVitAG~~~---~~~~tr~~l--l~~N~~i~k~i~~~i~~~~~~~~iiivv-sNPvDv 130 (324)
T TIGR01758 71 VAFTDVDVAILVGAFPR---KEGMERRDL--LSKNVKIFKEQGRALDKLAKKDCKVLVV-GNPANT 130 (324)
T ss_pred HHhCCCCEEEEcCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHH
Confidence 56789999999988643 223344321 1112 23445555432344555554 699987
No 95
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=28.62 E-value=2.2e+02 Score=25.67 Aligned_cols=20 Identities=30% Similarity=0.300 Sum_probs=15.4
Q ss_pred HHHHHHHhhcCCEEEEEecC
Q 010126 216 IGAAEVAARQADATVLVMGL 235 (517)
Q Consensus 216 ~~~a~~~a~~aD~vIv~~g~ 235 (517)
...+...+.+||+|+++...
T Consensus 54 y~aLi~ta~dad~V~ll~da 73 (143)
T PF10662_consen 54 YHALIVTAQDADVVLLLQDA 73 (143)
T ss_pred HHHHHHHHhhCCEEEEEecC
Confidence 45566778899999998754
No 96
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=28.28 E-value=2.4e+02 Score=27.52 Aligned_cols=55 Identities=16% Similarity=0.263 Sum_probs=37.2
Q ss_pred EEEEEEEecCCcCcceEEEEEeeCCCCCCCcccccccccee----eecCCCeeEEEEEeCC
Q 010126 419 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKV----HVTAGALQSVRLDIHV 475 (517)
Q Consensus 419 ~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv----~l~pGes~~v~~~~~~ 475 (517)
.++++|.|.|+. .-.||.++.+......|.+.=.-|--+ .|+||+.+++.+....
T Consensus 35 ~~si~i~N~~~~--pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~ 93 (226)
T PRK15218 35 DITVQLMNDGKR--SSLIQAWIDNGDTSLPPEKLQVPFIMTPPVIRVAANSGQQLKIKKLA 93 (226)
T ss_pred EEEEEEEcCCCC--cEEEEEEEeCCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECC
Confidence 588999999986 599999998754322221111124333 4899999999988653
No 97
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=28.27 E-value=58 Score=33.25 Aligned_cols=57 Identities=18% Similarity=0.290 Sum_probs=29.9
Q ss_pred HHhhcCCEEEEEecCCCccccccCCCCCCCCC--hhHHHHHHHHHHhCCCCEEEEEecCceeec
Q 010126 221 VAARQADATVLVMGLDQSIEAEFIDRAGLLLP--GRQQELVSRVAKASRGPVVLVLMCGGPVDV 282 (517)
Q Consensus 221 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~--~~q~~li~~l~~~~~~pvVvVl~~g~Py~l 282 (517)
+.+++||+||++.|.+. .++.+|.++-.. .--.++++++.+.++ ..++++. ++|.++
T Consensus 68 ~~l~~aDiViitag~p~---~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~-~npvd~ 126 (309)
T cd05294 68 SDVAGSDIVIITAGVPR---KEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVV-TNPVDV 126 (309)
T ss_pred HHhCCCCEEEEecCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEe-CCchHH
Confidence 34789999999998654 233444322000 011233444444333 3344433 699875
No 98
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=27.91 E-value=1.8e+02 Score=22.05 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=17.5
Q ss_pred ChhHHHHHHHHHHhC-CCCEEEEEe
Q 010126 252 PGRQQELVSRVAKAS-RGPVVLVLM 275 (517)
Q Consensus 252 ~~~q~~li~~l~~~~-~~pvVvVl~ 275 (517)
.+.|..|.+++.... ++|+++|++
T Consensus 31 ie~Q~~L~~~ik~~F~~~P~i~V~n 55 (58)
T PF06858_consen 31 IEEQLSLFKEIKPLFPNKPVIVVLN 55 (58)
T ss_dssp HHHHHHHHHHHHHHTTTS-EEEEE-
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 357999999988655 789998865
No 99
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=27.84 E-value=66 Score=32.99 Aligned_cols=55 Identities=24% Similarity=0.337 Sum_probs=31.4
Q ss_pred HHhhcCCEEEEEecCCCccccccCCCCCCCCChhH----HHHHHHHHHhCCCCEEEEEecCceeec
Q 010126 221 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 282 (517)
Q Consensus 221 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q----~~li~~l~~~~~~pvVvVl~~g~Py~l 282 (517)
+..+++|+||++.|... .+|.+|.++ -..- .++.+++.+. ....++++ ..||.|.
T Consensus 63 ~~~~daDivvitaG~~~---~~g~~R~dl--l~~N~~I~~~i~~~i~~~-~p~~iiiv-vsNPvDv 121 (312)
T TIGR01772 63 NALKGADVVVIPAGVPR---KPGMTRDDL--FNVNAGIVKDLVAAVAES-CPKAMILV-ITNPVNS 121 (312)
T ss_pred HHcCCCCEEEEeCCCCC---CCCccHHHH--HHHhHHHHHHHHHHHHHh-CCCeEEEE-ecCchhh
Confidence 56789999999998653 234455432 1111 2344455543 33444443 4799983
No 100
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=27.54 E-value=1.9e+02 Score=28.24 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=35.9
Q ss_pred EEEEEEEecCCcCcceEEEEEeeCCCCCCCcccccccccee----eecCCCeeEEEEEeC
Q 010126 419 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKV----HVTAGALQSVRLDIH 474 (517)
Q Consensus 419 ~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv----~l~pGes~~v~~~~~ 474 (517)
.++++|+|+++. .-.||.++.+......|.+.-.-|--+ .|+||+.+++.|...
T Consensus 27 ~~sv~l~N~~~~--p~LvQsWvd~~~~~~~p~~~~~pFivtPPlfrl~~~~~~~lRI~~~ 84 (233)
T PRK15246 27 AQSLTLSNDNTT--PMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRLLLS 84 (233)
T ss_pred eEEEEEEeCCCC--cEEEEEEEeCCCCccCcccccCcEEECCcceEECCCCceEEEEEEC
Confidence 588999999975 689999997543222232211223332 489999999998765
No 101
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=27.24 E-value=1.3e+02 Score=22.36 Aligned_cols=11 Identities=27% Similarity=0.655 Sum_probs=8.0
Q ss_pred ecCeEEEEEEe
Q 010126 490 IPMGEHSLHIG 500 (517)
Q Consensus 490 ~~~G~y~~~vg 500 (517)
++||+|+|.|-
T Consensus 36 L~~G~Y~l~V~ 46 (66)
T PF07495_consen 36 LPPGKYTLEVR 46 (66)
T ss_dssp --SEEEEEEEE
T ss_pred CCCEEEEEEEE
Confidence 47899999886
No 102
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=27.21 E-value=1.1e+02 Score=25.45 Aligned_cols=15 Identities=20% Similarity=0.319 Sum_probs=12.6
Q ss_pred eEEEEEEEEecCCcC
Q 010126 417 SLGLHVDIKNTGDMA 431 (517)
Q Consensus 417 ~~~v~v~V~NtG~~~ 431 (517)
.+...|+|+|.|+.+
T Consensus 14 Gf~~~v~v~N~~~~~ 28 (101)
T PF00553_consen 14 GFQGEVTVTNNGSSP 28 (101)
T ss_dssp EEEEEEEEEESSSST
T ss_pred CeEEEEEEEECCCCc
Confidence 488899999999765
No 103
>PRK13211 N-acetylglucosamine-binding protein A; Reviewed
Probab=26.98 E-value=2e+02 Score=31.37 Aligned_cols=48 Identities=29% Similarity=0.376 Sum_probs=37.4
Q ss_pred eEEEEEEEEecCCcCcceEEEEEeeCCCCCCCccccccccceeeecCCCeeEEEEEeCC
Q 010126 417 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHV 475 (517)
Q Consensus 417 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv~l~pGes~~v~~~~~~ 475 (517)
.+++.++|+-+|++ -|.+||-+.. +..+++.+..|.-+. +.|+|+|..
T Consensus 328 ~~~i~ftv~a~g~~----~vta~V~d~~------g~~~~~~~~~v~d~s-~~vtL~Ls~ 375 (478)
T PRK13211 328 AATLDFTVTATGDM----NVEATVYNHD------GEALGSKSQTVNDGS-QSVSLDLSK 375 (478)
T ss_pred cEEEEEEEEeccce----EEEEEEEcCC------CCeeeeeeEEecCCc-eeEEEeccc
Confidence 58899999888865 4667777665 678888888887766 888888876
No 104
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=26.41 E-value=1.3e+02 Score=27.17 Aligned_cols=14 Identities=21% Similarity=0.377 Sum_probs=10.3
Q ss_pred ceEEEEEEEccccC
Q 010126 504 HSISLQANLEGIKF 517 (517)
Q Consensus 504 ~~~~~~~~~~~~~~ 517 (517)
+++.+.+.++|+-|
T Consensus 133 kK~VvKV~~~~~~~ 146 (149)
T PRK10202 133 KKVVLKVTIEDGYF 146 (149)
T ss_pred EEEEEEEEecCccc
Confidence 57777788888765
No 105
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=25.79 E-value=89 Score=24.33 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=15.7
Q ss_pred eEEEEEEEEecCCcCcce
Q 010126 417 SLGLHVDIKNTGDMAGTH 434 (517)
Q Consensus 417 ~~~v~v~V~NtG~~~G~e 434 (517)
.++.+++|+|+|......
T Consensus 42 ~v~ytitvtN~G~~~a~n 59 (76)
T PF01345_consen 42 TVTYTITVTNTGPAPATN 59 (76)
T ss_pred EEEEEEEEEECCCCeeEe
Confidence 799999999999988554
No 106
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=25.79 E-value=1e+02 Score=22.55 Aligned_cols=26 Identities=19% Similarity=0.455 Sum_probs=18.4
Q ss_pred eEEEEEEEEecCCcCcceEEEEEeeCC
Q 010126 417 SLGLHVDIKNTGDMAGTHTLLVFAKPP 443 (517)
Q Consensus 417 ~~~v~v~V~NtG~~~G~evvQlY~~~~ 443 (517)
.++.+++|+|+|..+.. -|++-=..|
T Consensus 13 ~v~Yti~v~N~g~~~a~-~v~v~D~lP 38 (53)
T TIGR01451 13 TITYTITVTNNGNVPAT-NVVVTDILP 38 (53)
T ss_pred EEEEEEEEEECCCCceE-eEEEEEcCC
Confidence 79999999999997644 344433333
No 107
>PRK01355 azoreductase; Reviewed
Probab=25.68 E-value=2e+02 Score=27.13 Aligned_cols=40 Identities=10% Similarity=0.188 Sum_probs=28.4
Q ss_pred ccHHHHHHHhhcCCEEEEEecCCCccccccCCCCCCCCChhHHHHHHHHHH
Q 010126 214 QLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAK 264 (517)
Q Consensus 214 ~~~~~a~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~l~~ 264 (517)
....+..+...+||.+|++.-.. ++.+|..-..+|+.+..
T Consensus 66 ~~~~~~~~~l~~AD~iV~~sP~y-----------~~~ipa~LK~~iDrv~~ 105 (199)
T PRK01355 66 EVSDKYINQLKSVDKVVISCPMT-----------NFNVPATLKNYLDHIAV 105 (199)
T ss_pred hhHHHHHHHHHhCCEEEEEcCcc-----------ccCChHHHHHHHHHHHh
Confidence 44566778899999999965322 35677777778888753
No 108
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=25.46 E-value=1.7e+02 Score=26.70 Aligned_cols=39 Identities=23% Similarity=0.257 Sum_probs=27.7
Q ss_pred hhcCCEEEEEecCCCccccccCCCCCCCCChhHHHHHHHHHHhCCCCEEEEEec
Q 010126 223 ARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMC 276 (517)
Q Consensus 223 a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~l~~~~~~pvVvVl~~ 276 (517)
..+.|++|+++.... .+....|..++.+ .++|+|+|++.
T Consensus 76 ~~~~D~ii~VvDa~~--------------l~r~l~l~~ql~e-~g~P~vvvlN~ 114 (156)
T PF02421_consen 76 SEKPDLIIVVVDATN--------------LERNLYLTLQLLE-LGIPVVVVLNK 114 (156)
T ss_dssp HTSSSEEEEEEEGGG--------------HHHHHHHHHHHHH-TTSSEEEEEET
T ss_pred hcCCCEEEEECCCCC--------------HHHHHHHHHHHHH-cCCCEEEEEeC
Confidence 368999999885321 1334567778776 68999999874
No 109
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=25.46 E-value=53 Score=33.44 Aligned_cols=53 Identities=21% Similarity=0.384 Sum_probs=29.2
Q ss_pred hhcCCEEEEEecCCCccccccCCCCCCCCChhHHH----HHHHHHHhCCCCEEEEEecCceeec
Q 010126 223 ARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQE----LVSRVAKASRGPVVLVLMCGGPVDV 282 (517)
Q Consensus 223 a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~----li~~l~~~~~~pvVvVl~~g~Py~l 282 (517)
++++|+||+++|.+.. ++.+|.+ |-....+ .++++.+..+ +.++++. .||.++
T Consensus 67 ~~~aDiVIitag~p~~---~~~sR~~--l~~~N~~iv~~i~~~I~~~~p-~~~iIv~-tNP~di 123 (305)
T TIGR01763 67 TANSDIVVITAGLPRK---PGMSRED--LLSMNAGIVREVTGRIMEHSP-NPIIVVV-SNPLDA 123 (305)
T ss_pred hCCCCEEEEcCCCCCC---cCCCHHH--HHHHHHHHHHHHHHHHHHHCC-CeEEEEe-cCcHHH
Confidence 5799999999997542 2233322 1122233 4444554333 3444433 699987
No 110
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=24.95 E-value=61 Score=33.22 Aligned_cols=57 Identities=26% Similarity=0.381 Sum_probs=31.3
Q ss_pred HHhhcCCEEEEEecCCCccccccCCCCCCCCC--hhHHHHHHHHHHhCCCCEEEEEecCceeec
Q 010126 221 VAARQADATVLVMGLDQSIEAEFIDRAGLLLP--GRQQELVSRVAKASRGPVVLVLMCGGPVDV 282 (517)
Q Consensus 221 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~--~~q~~li~~l~~~~~~pvVvVl~~g~Py~l 282 (517)
+..+++|+||++.|.+. ..|.+|.++--. .--.++++++.+.+ ...++++ ..||.|+
T Consensus 64 ~~~~daDivvitaG~~~---k~g~tR~dll~~N~~i~~~i~~~i~~~~-p~a~viv-vtNPvDv 122 (310)
T cd01337 64 KALKGADVVVIPAGVPR---KPGMTRDDLFNINAGIVRDLATAVAKAC-PKALILI-ISNPVNS 122 (310)
T ss_pred HhcCCCCEEEEeCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEE-ccCchhh
Confidence 56789999999998653 233444332100 01123445555433 3444443 4799976
No 111
>PRK09739 hypothetical protein; Provisional
Probab=24.77 E-value=1.5e+02 Score=27.90 Aligned_cols=39 Identities=21% Similarity=0.151 Sum_probs=27.2
Q ss_pred ccHHHHHHHhhcCCEEEEEecCCCccccccCCCCCCCCChhHHHHHHHHH
Q 010126 214 QLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVA 263 (517)
Q Consensus 214 ~~~~~a~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~l~ 263 (517)
.+..+..+...+||.+|++.-. + ++.+|..-..+|+.+.
T Consensus 68 ~~~~~~~~~l~~AD~iV~~~P~---y--------~~~~Pa~LK~~iD~v~ 106 (199)
T PRK09739 68 PEVHQLYSELLEHDALVFVFPL---W--------WYSFPAMLKGYIDRVW 106 (199)
T ss_pred HHHHHHHHHHHhCCEEEEECch---h--------hhcchHHHHHHHHHHc
Confidence 3456777889999999996522 1 3566776677777764
No 112
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional
Probab=24.70 E-value=2.2e+02 Score=28.03 Aligned_cols=54 Identities=17% Similarity=0.247 Sum_probs=36.3
Q ss_pred EEEEEEEecCCcCcceEEEEEeeCCCCCCCcccccccccee----eecCCCeeEEEEEeC
Q 010126 419 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKV----HVTAGALQSVRLDIH 474 (517)
Q Consensus 419 ~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv----~l~pGes~~v~~~~~ 474 (517)
.++++|+|+++. .-.||.++.+......|.+.-.-|--+ .|+||+.+++.|.-.
T Consensus 50 ~~sv~i~N~~~~--pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~ 107 (242)
T PRK15253 50 EVVVQLVNQGEQ--ASLVQSWIDDGNTSLPPEKIQVPFMLTPPVARVAAESGQQIKIKKM 107 (242)
T ss_pred eEEEEEEcCCCC--cEEEEEEEECCCCCCCcccccCCEEECCCeEEECCCCceEEEEEEC
Confidence 578889999986 599999998754322222111124333 479999999998744
No 113
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=24.19 E-value=74 Score=32.51 Aligned_cols=57 Identities=21% Similarity=0.295 Sum_probs=30.3
Q ss_pred HHhhcCCEEEEEecCCCccccccCCCCCCCCChhHH----HHHHHHHHhCCCCEEEEEecCceeec
Q 010126 221 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQ----ELVSRVAKASRGPVVLVLMCGGPVDV 282 (517)
Q Consensus 221 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~----~li~~l~~~~~~pvVvVl~~g~Py~l 282 (517)
+.+++||+||++.|.... .|.+|.-+.|-..-. +++.++.+.. ...++++ ..||.|+
T Consensus 64 ~~~~~aDivvitaG~~~k---pg~tr~R~dll~~N~~I~~~i~~~i~~~~-p~~i~iv-vsNPvDv 124 (307)
T cd05290 64 DDCADADIIVITAGPSID---PGNTDDRLDLAQTNAKIIREIMGNITKVT-KEAVIIL-ITNPLDI 124 (307)
T ss_pred HHhCCCCEEEECCCCCCC---CCCCchHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEE-ecCcHHH
Confidence 567899999999886432 233320011112222 3444555433 3444443 3799887
No 114
>PLN02602 lactate dehydrogenase
Probab=23.68 E-value=58 Score=34.00 Aligned_cols=57 Identities=25% Similarity=0.349 Sum_probs=31.3
Q ss_pred HHhhcCCEEEEEecCCCccccccCCCCCCCCChh--HHHHHHHHHHhCCCCEEEEEecCceeec
Q 010126 221 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGR--QQELVSRVAKASRGPVVLVLMCGGPVDV 282 (517)
Q Consensus 221 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~--q~~li~~l~~~~~~pvVvVl~~g~Py~l 282 (517)
+..++||+||++.|... .+|.+|.++-.... -.++++++.+.+ .+.++++. .||.++
T Consensus 101 ~~~~daDiVVitAG~~~---k~g~tR~dll~~N~~I~~~i~~~I~~~~-p~~ivivv-tNPvdv 159 (350)
T PLN02602 101 AVTAGSDLCIVTAGARQ---IPGESRLNLLQRNVALFRKIIPELAKYS-PDTILLIV-SNPVDV 159 (350)
T ss_pred HHhCCCCEEEECCCCCC---CcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe-cCchHH
Confidence 34789999999988653 23445543211110 123445555433 34454444 699976
No 115
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=23.61 E-value=53 Score=33.42 Aligned_cols=57 Identities=23% Similarity=0.266 Sum_probs=31.9
Q ss_pred HHhhcCCEEEEEecCCCccccccCCCCCCCCC--hhHHHHHHHHHHhCCCCEEEEEecCceeec
Q 010126 221 VAARQADATVLVMGLDQSIEAEFIDRAGLLLP--GRQQELVSRVAKASRGPVVLVLMCGGPVDV 282 (517)
Q Consensus 221 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~--~~q~~li~~l~~~~~~pvVvVl~~g~Py~l 282 (517)
+..++||+||++.|.+. .+|.+|.++--. +--.++++++.+. +...++++ .++|.++
T Consensus 60 ~~~~daDivVitag~~r---k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~viv-vsNP~d~ 118 (299)
T TIGR01771 60 SDCKDADLVVITAGAPQ---KPGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLV-ATNPVDI 118 (299)
T ss_pred HHHCCCCEEEECCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEE-eCCHHHH
Confidence 56789999999988643 234455432100 0112445556553 33455444 4799876
No 116
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=23.37 E-value=7.9e+02 Score=25.68 Aligned_cols=80 Identities=10% Similarity=0.057 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCceeeccCCCccCccCCCCCeEEEEC-CCCCccccccccccccCCccCCHHHHHHhhhceeeeccCCcc
Q 010126 130 HQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIG-PNSDVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGV 208 (517)
Q Consensus 130 ~~~la~~~a~~sivLLKN~~~~LPL~~~~~~~v~vig-~~a~~~~~~~G~~~~~~~~~~s~~~~l~~~~~~~y~~g~~~~ 208 (517)
-+.+-+.+-.+|+.+ ..+.+.-++.+. .++|++|| ... .| .++...+++.....+..+.
T Consensus 71 ~~~i~~~i~~~s~~~-q~~~~~~~~~~~-~~~I~IiGG~Gl------mG---------~slA~~l~~~G~~V~~~d~--- 130 (374)
T PRK11199 71 IEDVLRRVMRESYSS-ENDKGFKTLNPD-LRPVVIVGGKGQ------LG---------RLFAKMLTLSGYQVRILEQ--- 130 (374)
T ss_pred HHHHHHHHHHHHHHH-hHHhcccccCcc-cceEEEEcCCCh------hh---------HHHHHHHHHCCCeEEEeCC---
Confidence 456667777777643 344445566553 37899998 532 12 2344555553211111111
Q ss_pred ccCCcccHHHHHHHhhcCCEEEEEec
Q 010126 209 ACNGNQLIGAAEVAARQADATVLVMG 234 (517)
Q Consensus 209 ~~~~~~~~~~a~~~a~~aD~vIv~~g 234 (517)
.......+.++++|+||+++-
T Consensus 131 -----~~~~~~~~~~~~aDlVilavP 151 (374)
T PRK11199 131 -----DDWDRAEDILADAGMVIVSVP 151 (374)
T ss_pred -----CcchhHHHHHhcCCEEEEeCc
Confidence 111233456678999999874
No 117
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=23.33 E-value=1.2e+02 Score=19.99 Aligned_cols=26 Identities=12% Similarity=0.040 Sum_probs=22.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCC
Q 010126 83 GGLLREEDVNLALAYTITVQMRLGMF 108 (517)
Q Consensus 83 ~g~i~~~~id~sv~RIL~~K~~~Gl~ 108 (517)
.|.|+.+++-+++.||...+.+.|-.
T Consensus 2 ~~~i~~~~~~d~a~rv~~f~~~ngRl 27 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNFYESNGRL 27 (33)
T ss_pred CceecHHHHHHHHHHHHHHHHHcCCC
Confidence 47899999999999999999887753
No 118
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=23.21 E-value=2.7e+02 Score=24.68 Aligned_cols=59 Identities=19% Similarity=0.217 Sum_probs=36.2
Q ss_pred eEEEEEEEEecCCcCcc-eEEEEEeeCCCCC------CCcccccccc--ceeeecCCCeeEEEEEeCC
Q 010126 417 SLGLHVDIKNTGDMAGT-HTLLVFAKPPAGN------WSPNKQLIGF--KKVHVTAGALQSVRLDIHV 475 (517)
Q Consensus 417 ~~~v~v~V~NtG~~~G~-evvQlY~~~~~~~------~~P~k~L~gF--~kv~l~pGes~~v~~~~~~ 475 (517)
.+.++.++.|+++.+=. =.+++-+.+..+. -.|..-|..- .+..|+||++.++++++..
T Consensus 69 ~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~~~~~~ 136 (149)
T PF11906_consen 69 VLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFRLRLED 136 (149)
T ss_pred EEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEEEEeeC
Confidence 68999999999986411 1233444444332 1342223322 2445999999999999885
No 119
>PF08262 Lem_TRP: Leucophaea maderae tachykinin-related peptide ; InterPro: IPR013206 These peptides are designated Leucophaea maderae (Madeira cockroach) tachykinin-related peptides (Lem TRPs). Some were isolated from the midgut of L. maderae, whereas others appear to be brain specific. The Lem TRPs of the brain are myotropic and induce increases in the amplitude and frequency of spontaneous contractions and tonus of hindgut muscle in L. maderae []. They were also isolated from brain-corpora, cardiaca-corpora, allata-suboesophageal ganglion extracts of Locusta migratoria (Migratory locust). They stimulate visceral muscle contractions of the oviduct and the foregut of L. migratoria [].
Probab=22.66 E-value=34 Score=16.40 Aligned_cols=7 Identities=14% Similarity=0.335 Sum_probs=4.9
Q ss_pred cCCCCcE
Q 010126 26 QWRLDGY 32 (517)
Q Consensus 26 e~gF~G~ 32 (517)
-|||+|+
T Consensus 3 smgf~g~ 9 (10)
T PF08262_consen 3 SMGFHGM 9 (10)
T ss_pred ccccccc
Confidence 3788875
No 120
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=22.55 E-value=2.8e+02 Score=27.03 Aligned_cols=64 Identities=13% Similarity=0.132 Sum_probs=40.0
Q ss_pred hcCCEEEEEecCCCccccccCCCCCCCCChhHHHHHHHHHHhCCCCEEEEEecCceeeccCcCCCCCccEEEEecCCCc
Q 010126 224 RQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQ 302 (517)
Q Consensus 224 ~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~l~~~~~~pvVvVl~~g~Py~l~~~~~~~~v~ail~a~~~g~ 302 (517)
+++|++||.+.... |. .....+.|.++.+++.+ .+..+| +...|-.+..++ ..+.-+.+|+-|.
T Consensus 182 ~~~D~vIv~~HwG~----e~----~~~p~~~q~~~a~~lid-aGaDiI---iG~HpHv~q~~E---~y~~~~I~YSLGN 245 (250)
T PF09587_consen 182 KKADVVIVSLHWGI----EY----ENYPTPEQRELARALID-AGADII---IGHHPHVIQPVE---IYKGKPIFYSLGN 245 (250)
T ss_pred cCCCEEEEEeccCC----CC----CCCCCHHHHHHHHHHHH-cCCCEE---EeCCCCcccceE---EECCEEEEEeCcc
Confidence 56999999885321 21 12336789999999987 465443 246788776553 3444455666553
No 121
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=22.16 E-value=1.9e+02 Score=31.29 Aligned_cols=47 Identities=26% Similarity=0.357 Sum_probs=32.7
Q ss_pred cHHHHHHHhhcCCEEEEEecCCCccccccCCCCCCCCChhHHHHHHHHHHhCCCCEEEEEe
Q 010126 215 LIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLM 275 (517)
Q Consensus 215 ~~~~a~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~l~~~~~~pvVvVl~ 275 (517)
.++.+.+++++||.|++++..+. .++....+++..+ . .++|+++|++
T Consensus 286 GIeRs~~~i~~ADlvL~v~D~~~------------~~~~~d~~~~~~~-~-~~~~~i~v~N 332 (454)
T COG0486 286 GIERAKKAIEEADLVLFVLDASQ------------PLDKEDLALIELL-P-KKKPIIVVLN 332 (454)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCC------------CCchhhHHHHHhc-c-cCCCEEEEEe
Confidence 46778899999999999985432 1344556666622 2 4678998876
No 122
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=21.60 E-value=1.4e+02 Score=22.06 Aligned_cols=32 Identities=16% Similarity=0.120 Sum_probs=27.6
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 010126 73 LAIHTEGAVRGGLLREEDVNLALAYTITVQMR 104 (517)
Q Consensus 73 ~~~~l~~av~~g~i~~~~id~sv~RIL~~K~~ 104 (517)
..+.|..++..|.++.+..++-+.+++..+.+
T Consensus 11 ~~~~L~~a~a~GrL~~~Ef~~R~~~a~~A~t~ 42 (53)
T PF08044_consen 11 AVDLLRAAFAEGRLSLDEFDERLDAAYAARTR 42 (53)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHhcCcH
Confidence 35678899999999999999999999987655
No 123
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=21.57 E-value=3e+02 Score=29.07 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=26.4
Q ss_pred EEEEEEecCCcCcceEEEEEeeCCCCCCCccccccccceeeecCCCeeEEEEEeCC
Q 010126 420 LHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHV 475 (517)
Q Consensus 420 v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv~l~pGes~~v~~~~~~ 475 (517)
+.+.|+|.|..... ..+| .. .+. ++ +|=.|.||.|.+++++|.+
T Consensus 53 ~~f~V~N~~~~~~E--fe~~--~~------~~v-v~-e~EnIaPG~s~~l~~~L~p 96 (375)
T PRK10378 53 TQFIIQNHSQKALE--WEIL--KG------VMV-VE-ERENIAPGFSQKMTANLQP 96 (375)
T ss_pred EEEEEEeCCCCcce--EEee--cc------ccc-cc-cccccCCCCceEEEEecCC
Confidence 67888999987743 2222 11 010 11 1236899999988777754
No 124
>PRK01008 queuine tRNA-ribosyltransferase; Provisional
Probab=21.46 E-value=1.2e+02 Score=31.88 Aligned_cols=75 Identities=12% Similarity=-0.016 Sum_probs=43.4
Q ss_pred hhhcCCCCcEEEcCchhhhhhhhcc------------------------------------cccCChHHHHHHHHHcCCC
Q 010126 23 IHGQWRLDGYIVSDCDSVGVLYNTQ------------------------------------HYTRTPEEAAADAIKAGLD 66 (517)
Q Consensus 23 LR~e~gF~G~ViSD~~~m~~~~~~~------------------------------------~~~~~~~ea~~~al~AG~D 66 (517)
|.+=|||+|-|+||.++-+..+-.+ ....++++...---.-|.|
T Consensus 76 lH~fm~w~gpilTDSGgfQv~SL~~~~v~~~~~~~~~~~~~~~~~~i~e~Gv~F~s~~dG~~~~ltPe~~i~~Q~~iGsD 155 (372)
T PRK01008 76 LHQFIGRNAPIITDSGGFQIFSLAYGSVAEEIKSCGKKKGGSSILKITDEGVWFKSYRDGRKLFLSPEISVQAQKDLGAD 155 (372)
T ss_pred HHHHhCCCCcccccCcceeEEEeccccchhhhccccccccccccceecCCCeEEecCCCCCceeeCHHHHHHHHHHHCCC
Confidence 5577899999999987654321110 0013454444444456777
Q ss_pred CcCchhHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 010126 67 LDCGPFLAIHTEGAVRGGLLREEDVNLALAYTITVQMR 104 (517)
Q Consensus 67 ~~~~~~~~~~l~~av~~g~i~~~~id~sv~RIL~~K~~ 104 (517)
+.|.-.. +-.-..+.+++.+|+.|-++.-.+
T Consensus 156 I~m~LDe-------~~~~~~~~~~~~~sv~rT~rW~~r 186 (372)
T PRK01008 156 IIIPLDE-------LLPFHADPTYFLQSCQRTYVWEKR 186 (372)
T ss_pred EEEEccc-------cCCCCCCHHHHHHHHHHHHHHHHH
Confidence 7763210 111236678888888888876433
No 125
>PF09912 DUF2141: Uncharacterized protein conserved in bacteria (DUF2141); InterPro: IPR018673 This family of conserved hypothetical proteins has no known function.
Probab=21.34 E-value=2.4e+02 Score=24.16 Aligned_cols=62 Identities=15% Similarity=0.263 Sum_probs=35.6
Q ss_pred EEEEecCCcCcceEEEEEeeCCCCCCCccccccccceeee-cCCCeeEEEE-EeCCCCC--ce-EEeCCCcE
Q 010126 422 VDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHV-TAGALQSVRL-DIHVCKH--LS-VVDKFGIR 488 (517)
Q Consensus 422 v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv~l-~pGes~~v~~-~~~~~~~--~~-~~d~~~~~ 488 (517)
|+|+|.=...|.-.|+||-+...- .+.-+.+.+..+ ..+.+.+++| .++. -. ++ +.|++++.
T Consensus 1 V~V~gi~~~~G~v~v~ly~~~~~f----~~~~~~~~~~~~~~~~~~~~~~f~~lp~-G~YAi~v~hD~N~Ng 67 (112)
T PF09912_consen 1 VTVEGIRNDKGQVRVALYNSAEGF----ENKKKALKRVKVPAKGGTVTITFEDLPP-GTYAIAVFHDENGNG 67 (112)
T ss_pred CEecccCCCCcEEEEEEEcChhch----hhcccceeEEEEEcCCCcEEEEECCCCC-ccEEEEEEEeCCCCC
Confidence 567887788999999999773221 223334455543 4445667777 3443 33 23 45666543
No 126
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=21.08 E-value=1.2e+02 Score=30.57 Aligned_cols=27 Identities=30% Similarity=0.228 Sum_probs=17.4
Q ss_pred HHHHHHHHcCCCCcCchh-HHHHHHHHH
Q 010126 55 EAAADAIKAGLDLDCGPF-LAIHTEGAV 81 (517)
Q Consensus 55 ea~~~al~AG~D~~~~~~-~~~~l~~av 81 (517)
+.+.+|+.||.|++|-.+ ..+.+++++
T Consensus 199 e~~~eAl~agaDiImLDNm~~e~~~~av 226 (280)
T COG0157 199 EEAEEALEAGADIIMLDNMSPEELKEAV 226 (280)
T ss_pred HHHHHHHHcCCCEEEecCCCHHHHHHHH
Confidence 456889999999997432 233444444
No 127
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=21.00 E-value=3e+02 Score=30.27 Aligned_cols=57 Identities=16% Similarity=0.300 Sum_probs=34.7
Q ss_pred eEEEEEEEEecCCcCcceEEEEEeeCCCCC-C-------Ccc----cccc---ccc--eeeecCCCeeEEEEEeCC
Q 010126 417 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGN-W-------SPN----KQLI---GFK--KVHVTAGALQSVRLDIHV 475 (517)
Q Consensus 417 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~~-~-------~P~----k~L~---gF~--kv~l~pGes~~v~~~~~~ 475 (517)
.....++|+|+++.+ ..|.|+-..|.+. . .|. .... |-- ++.|+||++++++|....
T Consensus 443 ~~~~~i~v~N~~~~~--v~v~v~d~~PvS~d~~i~V~~~~~~~~~~~~~~~~~G~~~W~l~L~pg~~~~l~~~y~v 516 (525)
T TIGR02231 443 EYAYRITLKNLRKEP--ERVQIEEQLPVSENEDIKVKLLSPTTPGYDEEDKKDGILEWKLTLKPGEKRDLKFKFKV 516 (525)
T ss_pred EEEEEEEEEcCCCCc--eEEEEEeeccCCCCCeeEEEEecCCCccccccccCCCeEEEEEEECCCCeEEEEEEEEE
Confidence 467889999998874 4556666667553 1 121 1111 111 346788888888887665
No 128
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=20.97 E-value=1.9e+02 Score=25.44 Aligned_cols=41 Identities=10% Similarity=0.122 Sum_probs=27.9
Q ss_pred CcccHHHHHHHhhcCCEEEEEecCCCccccccCCCCCCCCChhHHHHHHHHH
Q 010126 212 GNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVA 263 (517)
Q Consensus 212 ~~~~~~~a~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~l~~~q~~li~~l~ 263 (517)
..+.+++..+...+||.+|++.-.. ..+.++.-..+++.+.
T Consensus 57 ~~d~~~~~~~~l~~aD~iI~~sP~y-----------~~~~s~~lK~~lD~~~ 97 (152)
T PF03358_consen 57 IPDDVQELYDKLKEADGIIFASPVY-----------NGSVSGQLKNFLDRLS 97 (152)
T ss_dssp TSHHHHHHHHHHHHSSEEEEEEEEB-----------TTBE-HHHHHHHHTHH
T ss_pred CcHHHHHHHhceecCCeEEEeecEE-----------cCcCChhhhHHHHHhc
Confidence 3566788889999999999976322 1245666667777764
No 129
>PF14079 DUF4260: Domain of unknown function (DUF4260)
Probab=20.38 E-value=52 Score=28.44 Aligned_cols=16 Identities=31% Similarity=0.592 Sum_probs=12.3
Q ss_pred cCCcCCCC-CCceeCCC
Q 010126 363 PFGHGMSY-TTFAHTLS 378 (517)
Q Consensus 363 pFG~GLSY-Ttf~~s~~ 378 (517)
-|||||-| +.|.++.+
T Consensus 94 ~lGYGLKy~~gF~~THL 110 (113)
T PF14079_consen 94 ALGYGLKYPDGFKDTHL 110 (113)
T ss_pred HcCcCCCCCCCcccccc
Confidence 39999999 57777654
No 130
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=20.30 E-value=2.9e+02 Score=27.89 Aligned_cols=57 Identities=19% Similarity=0.292 Sum_probs=34.4
Q ss_pred eEEEEEEEEecCCcCcceEEEEEeeCCCCCC--------Ccc----ccccccc--eeeecCCCeeEEEEEeCC
Q 010126 417 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNW--------SPN----KQLIGFK--KVHVTAGALQSVRLDIHV 475 (517)
Q Consensus 417 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~~~--------~P~----k~L~gF~--kv~l~pGes~~v~~~~~~ 475 (517)
.....++|+|..+.+-. |+|.=..|.+.. .|. ..-.|.- ++.|+|||+++++|....
T Consensus 243 ~~~~~itv~N~~~~~v~--v~v~d~iPvs~~~~I~V~~~~~~~~~~~~~~g~~~W~~~l~~g~~~~l~~~y~v 313 (317)
T PF13598_consen 243 TYEYTITVRNNKDEPVT--VTVEDQIPVSEDEDIKVELLEPPEPNEDEKDGILEWKVTLPPGESRTLEFSYEV 313 (317)
T ss_pred EEEEEEEEECCCCCCEE--EEEEeCCCCCCCceEEEEEcCCCCCcccCCCCEEEEEEEECCCCEEEEEEEEEE
Confidence 46889999998866533 666666665531 111 1222221 345788888888777654
No 131
>smart00237 Calx_beta Domains in Na-Ca exchangers and integrin-beta4. Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)
Probab=20.25 E-value=4.7e+02 Score=21.10 Aligned_cols=51 Identities=16% Similarity=0.166 Sum_probs=34.3
Q ss_pred EEEEEEEecCCcCcceEEEEEeeCCCCC-C---CccccccccceeeecCCCeeEEEEEeCC
Q 010126 419 GLHVDIKNTGDMAGTHTLLVFAKPPAGN-W---SPNKQLIGFKKVHVTAGALQSVRLDIHV 475 (517)
Q Consensus 419 ~v~v~V~NtG~~~G~evvQlY~~~~~~~-~---~P~k~L~gF~kv~l~pGes~~v~~~~~~ 475 (517)
++.++|.-+|...|.-.|..+..+-.+. . .|. -..+..+|||+ .-+|+|+.
T Consensus 19 ~~~v~V~R~g~~~~~~~V~~~t~~gtA~~g~Dy~~~-----~g~l~F~~ge~-~k~i~i~i 73 (90)
T smart00237 19 EVEVCVVRTGGARGTVVVPYRTEDGTATAGSDYEPV-----EGTLTFPPGET-EKCIRIKI 73 (90)
T ss_pred EEEEEEEecCCCCcEEEEEEEEcCCcCCCCCCcccc-----ceEEEECCCCE-EEEEEEEE
Confidence 4778888999999998888887766543 1 232 24556799985 34444443
Done!