Query 010128
Match_columns 517
No_of_seqs 271 out of 1824
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 21:23:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010128.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010128hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0236 Sulfate/bicarbonate/ox 100.0 3E-87 6.5E-92 733.7 32.1 477 31-514 14-500 (665)
2 TIGR00815 sulP high affinity s 100.0 5.8E-80 1.2E-84 672.7 48.5 431 83-515 1-432 (563)
3 COG0659 SUL1 Sulfate permease 100.0 4E-76 8.7E-81 633.1 43.3 415 78-513 3-420 (554)
4 PRK11660 putative transporter; 100.0 1.4E-74 3.1E-79 630.4 46.1 407 86-511 19-449 (568)
5 PF00916 Sulfate_transp: Sulfa 100.0 1E-50 2.2E-55 406.9 17.1 280 195-475 1-280 (280)
6 PRK10720 uracil transporter; P 100.0 3.7E-29 8E-34 263.6 33.5 374 72-514 15-417 (428)
7 TIGR03173 pbuX xanthine permea 100.0 8.5E-29 1.9E-33 260.6 35.8 331 106-481 10-364 (406)
8 TIGR00801 ncs2 uracil-xanthine 100.0 1.1E-28 2.3E-33 259.9 32.5 349 73-481 7-380 (415)
9 COG2252 Xanthine/uracil/vitami 100.0 1.6E-27 3.5E-32 244.3 34.4 384 75-505 3-406 (436)
10 TIGR03616 RutG pyrimidine util 99.9 2.1E-24 4.5E-29 227.5 32.1 331 71-469 30-378 (429)
11 COG2233 UraA Xanthine/uracil p 99.9 2.4E-25 5.3E-30 230.1 22.8 348 68-470 14-377 (451)
12 PRK11412 putative uracil/xanth 99.9 1.9E-22 4.2E-27 211.4 34.2 347 73-471 10-373 (433)
13 PF13792 Sulfate_tra_GLY: Sulf 99.9 3.1E-25 6.6E-30 179.1 7.7 82 82-163 1-83 (84)
14 PF00860 Xan_ur_permease: Perm 99.9 3.5E-20 7.5E-25 194.2 30.4 341 98-471 2-365 (389)
15 TIGR00834 ae anion exchange pr 99.6 1.5E-12 3.2E-17 145.4 37.1 343 105-458 377-791 (900)
16 TIGR00843 benE benzoate transp 99.6 1.4E-12 2.9E-17 134.4 32.2 340 98-498 22-391 (395)
17 KOG1172 Na+-independent Cl/HCO 99.6 1.4E-11 3.1E-16 134.3 35.9 324 127-458 396-767 (876)
18 PF03594 BenE: Benzoate membra 99.4 2.9E-09 6.3E-14 108.1 32.7 274 178-499 87-376 (378)
19 KOG1292 Xanthine/uracil transp 99.3 4.9E-10 1.1E-14 115.5 21.3 336 68-457 9-390 (510)
20 PF00955 HCO3_cotransp: HCO3- 99.1 1.2E-11 2.7E-16 131.4 1.8 348 105-460 41-474 (510)
21 COG3135 BenE Uncharacterized p 98.8 2.3E-06 5E-11 85.5 25.6 271 178-500 102-392 (402)
22 PF11840 DUF3360: Protein of u 98.1 0.0017 3.6E-08 65.6 24.0 257 149-452 123-400 (492)
23 PRK10720 uracil transporter; P 91.9 1.4 3.1E-05 47.0 11.2 61 379-443 261-321 (428)
24 TIGR03173 pbuX xanthine permea 90.8 14 0.00029 39.2 17.3 109 105-230 226-344 (406)
25 PRK11412 putative uracil/xanth 90.6 11 0.00023 40.4 16.1 118 100-234 242-370 (433)
26 TIGR00815 sulP high affinity s 88.4 38 0.00082 37.6 19.1 106 343-454 16-139 (563)
27 PF00860 Xan_ur_permease: Perm 87.8 2.8 6.1E-05 44.1 9.4 20 380-399 269-288 (389)
28 COG0659 SUL1 Sulfate permease 84.2 21 0.00045 39.5 14.1 103 345-453 25-139 (554)
29 PRK11660 putative transporter; 84.1 56 0.0012 36.2 17.7 114 92-224 274-394 (568)
30 COG2233 UraA Xanthine/uracil p 84.1 5.6 0.00012 42.4 9.2 188 268-475 177-379 (451)
31 TIGR00801 ncs2 uracil-xanthine 83.6 9.2 0.0002 40.6 10.8 112 104-232 240-362 (415)
32 TIGR03616 RutG pyrimidine util 73.7 25 0.00053 37.6 10.3 107 105-229 254-370 (429)
33 PF00916 Sulfate_transp: Sulfa 69.5 35 0.00077 33.7 9.9 132 337-469 146-277 (280)
34 COG0786 GltS Na+/glutamate sym 49.1 73 0.0016 33.4 7.9 175 182-379 7-196 (404)
35 PF03956 DUF340: Membrane prot 48.1 53 0.0012 30.9 6.4 57 438-494 23-80 (191)
36 TIGR00843 benE benzoate transp 47.0 3.7E+02 0.0081 28.4 13.5 103 344-449 23-142 (395)
37 TIGR00210 gltS sodium--glutama 37.3 1.9E+02 0.0042 30.6 9.2 40 185-224 8-51 (398)
38 KOG1292 Xanthine/uracil transp 35.9 1.5E+02 0.0032 32.0 7.9 77 127-219 309-386 (510)
39 KOG0236 Sulfate/bicarbonate/ox 35.2 7.2E+02 0.016 28.3 14.0 102 103-222 333-440 (665)
40 PF01102 Glycophorin_A: Glycop 32.6 65 0.0014 28.0 4.0 25 486-511 71-95 (122)
41 PRK12600 putative monovalent c 29.9 1E+02 0.0022 25.5 4.5 31 345-375 61-91 (94)
42 PF03818 MadM: Malonate/sodium 29.7 1.7E+02 0.0037 22.0 5.1 17 294-310 41-57 (60)
43 PF05437 AzlD: Branched-chain 28.2 3.1E+02 0.0068 22.3 7.4 62 433-498 32-94 (99)
44 TIGR00659 conserved hypothetic 27.9 4.8E+02 0.01 25.3 9.4 79 136-223 106-186 (226)
45 COG4129 Predicted membrane pro 27.1 2.4E+02 0.0052 29.1 7.7 91 410-506 8-101 (332)
46 PHA00736 hypothetical protein 27.1 2.9E+02 0.0062 21.1 6.7 48 114-161 4-52 (79)
47 TIGR02847 CyoD cytochrome o ub 26.7 3.7E+02 0.0081 22.3 8.8 54 205-275 28-81 (96)
48 PRK10692 hypothetical protein; 26.5 1.8E+02 0.004 23.6 5.1 44 94-139 6-57 (92)
49 PF05145 AmoA: Putative ammoni 25.5 4.8E+02 0.01 26.6 9.6 71 347-432 56-126 (318)
50 PRK04125 murein hydrolase regu 25.2 83 0.0018 28.1 3.4 23 282-304 24-46 (141)
51 COG3715 ManY Phosphotransferas 25.1 4.1E+02 0.0088 26.4 8.5 64 374-438 51-114 (265)
52 PRK15065 PTS system mannose-sp 23.9 7.2E+02 0.016 24.7 10.1 73 433-513 167-247 (262)
53 PF03169 OPT: OPT oligopeptide 23.5 1.1E+03 0.023 26.5 15.1 78 366-443 455-559 (624)
54 TIGR00822 EII-Sor PTS system, 23.2 6E+02 0.013 25.3 9.4 74 424-503 153-238 (265)
55 PRK09757 PTS system N-acetylga 22.9 6.2E+02 0.013 25.2 9.5 73 424-502 154-239 (267)
56 PRK12657 putative monovalent c 22.7 1.4E+02 0.0031 25.0 4.2 29 345-373 65-93 (100)
57 COG1296 AzlC Predicted branche 21.5 1.5E+02 0.0034 28.9 4.8 43 95-140 11-56 (238)
58 PF10762 DUF2583: Protein of u 21.4 2.4E+02 0.0053 22.8 4.9 43 95-139 7-57 (89)
59 PF06686 SpoIIIAC: Stage III s 21.1 3.4E+02 0.0075 19.9 5.9 47 153-207 8-54 (58)
60 TIGR00822 EII-Sor PTS system, 20.7 8.4E+02 0.018 24.2 16.6 28 195-222 161-188 (265)
61 PF03904 DUF334: Domain of unk 20.6 5.4E+02 0.012 24.9 8.0 76 414-504 144-224 (230)
62 PF03616 Glt_symporter: Sodium 20.0 1.9E+02 0.0041 30.2 5.4 42 185-226 8-53 (368)
63 COG1346 LrgB Putative effector 20.0 7E+02 0.015 24.2 8.7 67 127-198 156-223 (230)
No 1
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-87 Score=733.70 Aligned_cols=477 Identities=39% Similarity=0.617 Sum_probs=415.8
Q ss_pred cccccCCCCCChhHHHHHhhhhccCCCCcCcccccccchhhhhHHHHhhcccccccccccCCh-hhhHhhHHHHHHHHHH
Q 010128 31 RWLLNSPDPPSIWHELAGSIREAFFPRNKLSSSSRVKQTWRRSAFSFLRGLFPILNWGRNYKA-SKFKSDLMAGLTLASL 109 (517)
Q Consensus 31 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~wl~~y~~-~~l~~Di~aGltv~~~ 109 (517)
++.++.|++++..++.++..+++.+++++.++..+.++++++++.+.++++||+++|+|+|++ +++.+|++||+|+|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Pil~Wlp~Y~~~~~l~~DliaGltvg~l 93 (665)
T KOG0236|consen 14 RASVDTPTFDSSNEEEKSSVENTPTRKDKSERFRNKQRCSSNKFLRSLLSLLPILEWLPKYSLKEWLLGDLIAGLTVGSL 93 (665)
T ss_pred cccccCCCCCcchhhhhccccCccccccHHHHhhccccccHHHHHHHHHhhccHhhhhhcCCchhhchHHHhcCceeeee
Confidence 344444445554555555555554455555555122233455589999999999999999999 7899999999999999
Q ss_pred HHHHHHHHHHhhCCCcchhhHHhhhhhHHHHhccCCCccccchhHHHHHHHHHHHHhhcCCCC---ChHHHHHHHHHHHH
Q 010128 110 SIPQSIGYANLAKLDPQYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQNVQDPAA---DPVAYRKLVFTVTF 186 (517)
Q Consensus 110 ~iPq~iaya~laglpp~~gL~s~~i~~liyalfGss~~~~~Gp~a~~sl~~~~~v~~~~~~~~---~~~~~~~~~~~~~~ 186 (517)
.+||+||||.+||+||+|||||+|+|+++|++||+|||+++||+|++|+|+++++++..++.. ++..+++.+.+++|
T Consensus 94 ~VPQ~iaYa~la~lppiyGLYssf~~~~iY~~fGtsr~isiG~~av~sLmv~~~v~~~v~~~~~~~~~~~~i~va~~lt~ 173 (665)
T KOG0236|consen 94 SVPQGLAYALLAGLPPIYGLYSSFFPPLIYAIFGTSRHVSIGPFAVVSLMVGTVVSQVVLSEAPSNDIATTIQVATTLTF 173 (665)
T ss_pred ecchHHHHHHHcCCChHHHHHHHHHHHHHheeccCCCcccccHHHHHHHHHHHHHHHHHhccCCCcCcchhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988886665433 45677899999999
Q ss_pred HHHHHHHHHHhhhhhhHHhhccHhHHHHHHHHHHHHHHHHhhhhhhCccccCCCccHHHH---HHHHHhcccccCcchHH
Q 010128 187 FAGVFQSVFGLFRLGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSV---LGSVFSSLHHSYWYPLN 263 (517)
Q Consensus 187 l~Gv~~~llg~lrlg~l~~fip~pVi~Gf~~gigi~I~~~ql~~~~G~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 263 (517)
++|++|++||+||+|++++|+|+|++.||++|+|++|+.+|+|+++|+++...+.+.... ..+.+++.++ . +.+
T Consensus 174 l~Giiq~~mG~lrLGfl~~~lS~~~l~GFt~gaa~~I~~sQlk~llGi~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~ 250 (665)
T KOG0236|consen 174 LTGIIQLILGLLRLGFLVRFLSEPALSGFTTGAALHIVTSQLKVLLGITSFPRHSGPGSIVFIVFDLLANLPK--T-LAT 250 (665)
T ss_pred HHHHHHHHHHHHhcChHHHHccHHHHhHhhhhhhhhhhHHhhHhhccccccCCCCCceeEEEeeHHhhhcccc--c-chh
Confidence 999999999999999999999999999999999999999999999999955444443332 3334444443 3 789
Q ss_pred HHHHHHHHHHHHHHHHhh-hccccccccCcchhHHHHHHHHHHHHHhcccCC-CeeeeeccccCCCCCCCCccCCchhhH
Q 010128 264 FVLGCSFLIFLLIARFIG-RRNKKLFWLPAIAPLLSVILSTLIVYLTKADKH-GVKIVKHIKGGLNPSSAHQLQLTGPHL 341 (517)
Q Consensus 264 ~~ig~~~l~~ll~~~~~~-~~~~~~~~~~~~~~Li~ii~~t~i~~~~~~~~~-~~~~vg~ip~glp~~~~p~~~~~~~~~ 341 (517)
++++++++++++..|.+. ++.++.+|+|.|.++++++++|+++|.++.+.+ ....++++|+|+|+|.+|.+++..
T Consensus 251 ~~~~l~~l~~L~~~k~~~~~~~~k~~~v~~~~~li~vIi~T~~~~~~~~~~~~~~~~~~~i~~g~~~~~lp~~~~~~--- 327 (665)
T KOG0236|consen 251 LVLSLIFLVVLLLTKELNPKFKKKLFSVPIPFELIVVIIGTLISYIFRLEGRYGPIIVGEIPRGFPPPSLPPLSLTP--- 327 (665)
T ss_pred hhhHHHHHHHHHHHHHhhhhhcccceeecccHHHHHHHHHHHHHHHhccccccCCeeeccCCCCCCCCCCCChhhhH---
Confidence 999999999999999544 444555669999999999999999999998764 555667999999999999887644
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcCCCchHHHHHhHHHHHhhhccCccCcccchhhHHHHhhCCCcchHHHH
Q 010128 342 GQTAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVSNIV 421 (517)
Q Consensus 342 ~~~~~~~~~i~iv~~~~~~~~~~~~~~~~~~~~d~nqEL~a~GiaNi~~~lfg~~p~~~s~srS~v~~~~G~~T~ls~iv 421 (517)
++...++++++++++|+++++|+++++++|++|.||||+|+|++|++||||+|+|+|++++||++|.++|+|||++|++
T Consensus 328 -~~~~~~~~i~iva~~~~iai~k~fa~~~~y~vd~nqELiAlG~~Ni~sSff~~~p~tgs~sRSav~~~sG~~T~~s~i~ 406 (665)
T KOG0236|consen 328 -QVIPDAFAIAIVALLEHIAIGKSFASLHGYKVDSNQELIALGISNILSSFFGCYPTTGSFSRSAVNIKSGGRTQVAGIV 406 (665)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeCCChHHHHHHHHHHhhhhhceEcccchhhHHHHHhhcCCcchHHHHH
Confidence 5667778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHhhc-cCCHHHHHHHhcCChhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 010128 422 MAITVLLSLELFTSLLYYTPIAILASIILSALPG-LIDINEAINIYKVDKLDFLACIGAFLGVLFASVEIGLLAAVIFLC 500 (517)
Q Consensus 422 ~a~~~ll~l~~l~~l~~~iP~~vLaaili~~~~~-li~~~~~~~l~k~~~~d~~i~~~~~~~~~~~~~~~Gi~~Gv~~s~ 500 (517)
+++++++++++++|+++|+|+|+||+++++++.+ +++.++++.+||.+|.|+++|+.|++++++.+++.|+++|+++|+
T Consensus 407 ~~~~vl~~l~~l~p~f~~iP~~vLaaIIi~a~~~~l~~~~~~~~lwr~~k~D~~~~~~t~~~~i~~~ve~Glligv~~s~ 486 (665)
T KOG0236|consen 407 SAALVLLALLFLGPLFYYIPKCVLAAIIISALIGMLIQLEDLKPLWRLSKIDLLIWVVTFFTTIFLSLEIGLLIGVAFSL 486 (665)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhHHHhhhhhhhhheeCCHHHHHHHHHHhheeeEehhhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999 679999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCcccce
Q 010128 501 KKIFFPLEGISLSI 514 (517)
Q Consensus 501 ~~~l~~~~~~~~~~ 514 (517)
+.+++|.++.+..+
T Consensus 487 ~~ii~~~~~p~~~~ 500 (665)
T KOG0236|consen 487 FFIILRSQRPRISL 500 (665)
T ss_pred HHHHHHhcCcchhh
Confidence 99999988876554
No 2
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=100.00 E-value=5.8e-80 Score=672.68 Aligned_cols=431 Identities=50% Similarity=0.800 Sum_probs=401.3
Q ss_pred ccccccccCChhhhHhhHHHHHHHHHHHHHHHHHHHHhhCCCcchhhHHhhhhhHHHHhccCCCccccchhHHHHHHHHH
Q 010128 83 PILNWGRNYKASKFKSDLMAGLTLASLSIPQSIGYANLAKLDPQYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSA 162 (517)
Q Consensus 83 p~~~wl~~y~~~~l~~Di~aGltv~~~~iPq~iaya~laglpp~~gL~s~~i~~liyalfGss~~~~~Gp~a~~sl~~~~ 162 (517)
|+++|+++|+++++++|++||+|++++.+||+||||.+||+||++|||++++++++|++||+||++++||++.+++++++
T Consensus 1 p~~~wl~~y~~~~l~~Di~aGltv~~~~iP~~~ayA~laglpp~~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~ 80 (563)
T TIGR00815 1 PVLRWLPHYRLKKFKGDLMAGLTVGILLIPQAMAYAILAGLSPIYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGS 80 (563)
T ss_pred ChhhhhhhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccHhHHHHHHHHHHHHHHHHhhhhhhCccccCCCcc
Q 010128 163 LMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRLGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTD 242 (517)
Q Consensus 163 ~v~~~~~~~~~~~~~~~~~~~~~~l~Gv~~~llg~lrlg~l~~fip~pVi~Gf~~gigi~I~~~ql~~~~G~~~~~~~~~ 242 (517)
++.+++.+.....++.+++..+++++|++|+++|++|+|++++|+|+||+.||++|+|++|+.+|++.++|++..++..+
T Consensus 81 ~v~~~~~~~~~~~~~~~~a~~l~~l~Gi~~~~~g~lrlG~l~~~is~~Vi~Gf~~g~a~~i~~~Ql~~~~G~~~~~~~~~ 160 (563)
T TIGR00815 81 VIARVGLQYLFDCDAIRLAFTLTLLAGIFQVILGLLRLGFLIEFLSHAVISGFMTGAAITIGLSQLKGLLGISIFNTRTD 160 (563)
T ss_pred HHHHhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 99998754433346678889999999999999999999999999999999999999999999999999999986434456
Q ss_pred HHHHHHHHHhccccc-CcchHHHHHHHHHHHHHHHHHHhhhccccccccCcchhHHHHHHHHHHHHHhcccCCCeeeeec
Q 010128 243 VVSVLGSVFSSLHHS-YWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKH 321 (517)
Q Consensus 243 ~~~~~~~~~~~~~~~-~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~~~~~~Li~ii~~t~i~~~~~~~~~~~~~vg~ 321 (517)
.++.+.+.+.++++. .|||.+++++++++++++..|++++|++++.+.+.|.+++++++++++++.++.+++++.++|+
T Consensus 161 ~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~p~~li~vi~~~~~~~~~~~~~~~~~~~g~ 240 (563)
T TIGR00815 161 TLGVVISTWAGLPNTHNWNWCTLVIGLVLLLFLLYTKKLGKRNKKLLFAPAVAPLLVVILATLAVTIGLHKKQGVSILGH 240 (563)
T ss_pred hHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhccchhcccccHHHHHHHHHHHHHHHHccCCCCeEEEee
Confidence 777777777777661 1499999999999999999999989888877778889999999999999999888899999999
Q ss_pred cccCCCCCCCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcCCCchHHHHHhHHHHHhhhccCccCccc
Q 010128 322 IKGGLNPSSAHQLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSCYVATGS 401 (517)
Q Consensus 322 ip~glp~~~~p~~~~~~~~~~~~~~~~~~i~iv~~~~~~~~~~~~~~~~~~~~d~nqEL~a~GiaNi~~~lfg~~p~~~s 401 (517)
+|.|+|.+..|.+ +++.+.++++.++.+++++++|+++++|++++++||++|+||||+++|++|+++|+|||+|++++
T Consensus 241 ip~g~p~~~~~~~--~~~~~~~l~~~a~~ia~v~~~e~l~~a~~~~~~~~~~~d~n~El~a~G~~N~~~~~fg~~p~~~s 318 (563)
T TIGR00815 241 IPSGLSFFPPITL--DWELLPTLAPDAIAIAIVGLIESIAIARSFARMTGYKIDANQELVAQGIANIVGSFFSCYPATGS 318 (563)
T ss_pred cCCCCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHhhHHHHHHHHhCccCCCCc
Confidence 9999987777754 45668899999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHhhCCCcchHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHhhccCCHHHHHHHhcCChhhHHHHHHHHH
Q 010128 402 FSRTAVNFSAGCQTVVSNIVMAITVLLSLELFTSLLYYTPIAILASIILSALPGLIDINEAINIYKVDKLDFLACIGAFL 481 (517)
Q Consensus 402 ~srS~v~~~~G~~T~ls~iv~a~~~ll~l~~l~~l~~~iP~~vLaaili~~~~~li~~~~~~~l~k~~~~d~~i~~~~~~ 481 (517)
++||++|.++|+|||++++++++++++++++++|+++|+|+++||+++++++++|+|+++++++||.++.|+.+|+++++
T Consensus 319 ~srs~~~~~~G~~t~~a~i~~~~~~l~~~l~~~~~l~~iP~~~la~ili~~~~~l~~~~~~~~~~~~~~~d~~i~~~~~~ 398 (563)
T TIGR00815 319 LSRTAVNAKAGCRTQLSGVVTAIVVLLVLLVLTPLFYYIPQAALAAIIISAVRGLIDYKELYKLWKADKMDFVVWLVTFF 398 (563)
T ss_pred chHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHhcccCHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhcCCccccee
Q 010128 482 GVLFASVEIGLLAAVIFLCKKIFFPLEGISLSII 515 (517)
Q Consensus 482 ~~~~~~~~~Gi~~Gv~~s~~~~l~~~~~~~~~~~ 515 (517)
+++++|++.|+++|+++|++.+++|+++.+.+++
T Consensus 399 ~~~~~~~~~Gi~vGv~~s~~~~~~~~~~p~~~~l 432 (563)
T TIGR00815 399 GVVFTSIEIGLLVGVALSAAFLLLRIARPRGAVL 432 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEe
Confidence 9999999999999999999999999999766554
No 3
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-76 Score=633.06 Aligned_cols=415 Identities=31% Similarity=0.500 Sum_probs=388.9
Q ss_pred hhcccccccccccCChhhhHhhHHHHHHHHHHHHHHHHHHHHhhCCCcchhhHHhhhhhHHHHhccCCCccccchhHHHH
Q 010128 78 LRGLFPILNWGRNYKASKFKSDLMAGLTLASLSIPQSIGYANLAKLDPQYGLYTSVIPPLIYALMGSSREIAIGPVAVVS 157 (517)
Q Consensus 78 l~~~~p~~~wl~~y~~~~l~~Di~aGltv~~~~iPq~iaya~laglpp~~gL~s~~i~~liyalfGss~~~~~Gp~a~~s 157 (517)
+.+++|..+|.++|+.+|+++|++||+|+|++++||+||||..+|+||++|||++++++++|++||+||++++||++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~Dl~AGltva~valP~ama~a~~aGv~p~~GLyas~i~~~v~alfGgs~~~i~GPt~a~~ 82 (554)
T COG0659 3 LRSEIPTLKWLPYYFRSWLRGDLLAGLTVAAVALPLAMAFAIAAGVPPEAGLYASIVAGIIYALFGGSRGLISGPTGAFA 82 (554)
T ss_pred chhhccHHHhccccchhhhHHHHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCccceeccchhhH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccHhHHHHHHHHHHHHHHHHhhhhhhCcccc
Q 010128 158 MLLSALMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRLGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHF 237 (517)
Q Consensus 158 l~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~Gv~~~llg~lrlg~l~~fip~pVi~Gf~~gigi~I~~~ql~~~~G~~~~ 237 (517)
++++..+.+.. +++++.++++++++|++|+++|++|+|++++|+|+||+.||++|+|+.|+.+|++.++|++..
T Consensus 83 ~v~a~~i~~~~------~~g~~~~~~~tllaGv~~i~~G~lRLG~li~fip~pVl~Gf~~Giai~I~~~Ql~~~~G~~~~ 156 (554)
T COG0659 83 VVLAAVIASLV------ETGLALAFLATLLAGVFQILLGLLRLGRLIRFIPRPVLIGFTAGIAILIILTQLPVLLGLASK 156 (554)
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 99999998543 345889999999999999999999999999999999999999999999999999999999863
Q ss_pred CCCccHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHhhhccccccccCcchhHHHHHHHHHHHHHhcccC--CC
Q 010128 238 TNKTDVVSVLGSVFSSLHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADK--HG 315 (517)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~~~~~~Li~ii~~t~i~~~~~~~~--~~ 315 (517)
. +..++.+..++++..+ +||.+++++++++++++.++++.+|+| +++++++++|.++|.++.+. +|
T Consensus 157 ~--~~~~~~~~~l~~~~~~--~~~~~~~lg~~~l~il~~~~~~~~~~P--------~~liaiv~~t~i~~~~~~~~~~~G 224 (554)
T COG0659 157 V--SGFWAKVSALFTVLLT--INLATLLLGLLTLAILLFLPRLTPRIP--------SPLIALVLGTLIVWIFPLDSLRYG 224 (554)
T ss_pred c--cchHHHHHHHHHhccc--ccHHHHHHHHHHHHHHHHccchhhhCC--------cHHHHHHHHHHHHHHhcCCchhcc
Confidence 2 3377788889999998 999999999999999999887776665 78999999999999998764 66
Q ss_pred eeeeeccccCCCCCCCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcCCCchHHHHHhHHHHHhhhccC
Q 010128 316 VKIVKHIKGGLNPSSAHQLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSC 395 (517)
Q Consensus 316 ~~~vg~ip~glp~~~~p~~~~~~~~~~~~~~~~~~i~iv~~~~~~~~~~~~~~~~~~~~d~nqEL~a~GiaNi~~~lfg~ 395 (517)
++.|++|.++|++.+|+++ .+.+.++++.++++++++++|++.+++++++++|+++|.||||+|||++|+++++|||
T Consensus 225 -~i~~~lp~~~~~~~~P~~~--~~~~~~l~~~al~la~lg~iesllta~~~~~~~~~~~d~nrELiaqGiaNi~sglfgg 301 (554)
T COG0659 225 -EIPGSLPSGLPHFRLPNVS--LSLLLALLPYALALALLGLLESLLTAVSFDGMTGTKHDSNRELIAQGIANIASGLFGG 301 (554)
T ss_pred -cCcccCCcCCCcccCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHhhHHHHHHHHhCC
Confidence 7899999999999999876 4668899999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccchhhHHHHhhCCCcchHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHhhccCCHHHHHHHh-cCChhhHH
Q 010128 396 YVATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLELFTSLLYYTPIAILASIILSALPGLIDINEAINIY-KVDKLDFL 474 (517)
Q Consensus 396 ~p~~~s~srS~v~~~~G~~T~ls~iv~a~~~ll~l~~l~~l~~~iP~~vLaaili~~~~~li~~~~~~~l~-k~~~~d~~ 474 (517)
+|+||+++||++|.++|+|||+|++++|+++++++++++|+++|||+|+|++++++++++|+||+.++.++ |.+|.|+.
T Consensus 302 ~p~~g~~srS~~nv~sGarT~lsgi~~a~~lll~l~~~~~~~~~IP~a~Laavli~v~~~l~~~~~~~~~~~~~~~~e~~ 381 (554)
T COG0659 302 IPATGSISRSAINIKSGARTRLSGIIHAALLLLLLLFLAPLVSYIPLAALAAVLILVGWGLLDWSLLKPLLRKLPRGELL 381 (554)
T ss_pred ccccchhHHHHHHHHhCCcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhccHHHHHHHHhcCCchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999854 58999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcCCcccc
Q 010128 475 ACIGAFLGVLFASVEIGLLAAVIFLCKKIFFPLEGISLS 513 (517)
Q Consensus 475 i~~~~~~~~~~~~~~~Gi~~Gv~~s~~~~l~~~~~~~~~ 513 (517)
+++++++++++.+++.|+.+|+++|++.++.|.++.+..
T Consensus 382 v~~~t~~~tv~~~l~~GV~vGi~ls~~~~i~r~s~~~~~ 420 (554)
T COG0659 382 VLLTTALLTVFFDLVIGVVVGILLACLLFIRRISRPSIV 420 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 999999999999999999999999999999999886654
No 4
>PRK11660 putative transporter; Provisional
Probab=100.00 E-value=1.4e-74 Score=630.38 Aligned_cols=407 Identities=22% Similarity=0.365 Sum_probs=372.1
Q ss_pred cccccCChhhhHhhHHHHHHHHHHHHHHHHHHHHhhCCCcchhhHHhhhhhHHHHhccCCCccccchhHHHHHHHHHHHH
Q 010128 86 NWGRNYKASKFKSDLMAGLTLASLSIPQSIGYANLAKLDPQYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQ 165 (517)
Q Consensus 86 ~wl~~y~~~~l~~Di~aGltv~~~~iPq~iaya~laglpp~~gL~s~~i~~liyalfGss~~~~~Gp~a~~sl~~~~~v~ 165 (517)
+|+++|+++++++|++||+|++++.+||+||||.+||+||+||||++++++++|++||+||++++||++.++++++..++
T Consensus 19 ~wl~~y~~~~l~~D~iAGltv~~~~iPq~mayA~lag~pp~~GLysa~~~~~vyal~Gss~~~~~Gp~a~~~~~~~~~~~ 98 (568)
T PRK11660 19 CWKEKYTAARFTRDLIAGITVGIIAIPLAMALAIASGVPPQYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVILYPVSQ 98 (568)
T ss_pred HHHhcCCHHhhhHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCcccChhHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999887776
Q ss_pred hhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccHhHHHHHHHHHHHHHHHHhhhhhhCccccCCCccHHH
Q 010128 166 NVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRLGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVS 245 (517)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~Gv~~~llg~lrlg~l~~fip~pVi~Gf~~gigi~I~~~ql~~~~G~~~~~~~~~~~~ 245 (517)
+++ .+.+..+++++|++|+++|++|+|++++|+|+||+.||++|+|++|+.+|++.++|++..+.+.++++
T Consensus 99 ~~~---------~~~~~~~~~l~Gii~~l~gllrlG~l~~fip~pVi~Gf~~g~al~I~~~Ql~~~lG~~~~~~~~~~~~ 169 (568)
T PRK11660 99 QFG---------LAGLLVATLMSGIILILMGLARLGRLIEYIPLSVTLGFTSGIGIVIATLQIKDFFGLQMAHVPEHYLE 169 (568)
T ss_pred Hhh---------HHHHHHHHHHHHHHHHHHHHHhhhHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 654 34566789999999999999999999999999999999999999999999999999986444567888
Q ss_pred HHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHhhhccccccccCcchhHHHHHHHHHHHHHhcccCCCeeeeec----
Q 010128 246 VLGSVFSSLHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKH---- 321 (517)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~~~~~~Li~ii~~t~i~~~~~~~~~~~~~vg~---- 321 (517)
.+.++++++++ +||.++++|+.++++++.++++.+|.| .++++++++|++++.++....+++.+|+
T Consensus 170 ~l~~~~~~l~~--~~~~~~~~~~~~l~lll~~~~~~~~iP--------~~li~iiv~t~~~~~~~~~~~~v~~vg~~~~~ 239 (568)
T PRK11660 170 KVGALFQALPT--INWGDALIGIVTLGVLILWPRLKIRLP--------GHLPALLAGTAVMGVLNLLGGHVATIGSRFHY 239 (568)
T ss_pred HHHHHHHhhcc--CCHHHHHHHHHHHHHHHHHHhhcccCc--------hHHHHHHHHHHHHHHHhccCCCceeecccccc
Confidence 88899999999 999999999999999888776555443 6799999999999999876677777765
Q ss_pred ----------cccCCCCCCCCc---------cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcCCCchHHHH
Q 010128 322 ----------IKGGLNPSSAHQ---------LQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVA 382 (517)
Q Consensus 322 ----------ip~glp~~~~p~---------~~~~~~~~~~~~~~~~~i~iv~~~~~~~~~~~~~~~~~~~~d~nqEL~a 382 (517)
+|.++|++.+|. .+++++.+.+.++.++.+++++++|++.+++.+++++++++|.||||++
T Consensus 240 ~~~~g~~~~~ip~~~p~~~~p~~~~~~~~~~~~~~~~~~~~ll~~a~~iaiv~~iesl~~~~~~~~~~~~~~d~n~EL~a 319 (568)
T PRK11660 240 VLADGSQGNGIPPLLPQFVLPWNLPGADGQPFTLSWDLIRALLPAAFSMAMLGAIESLLCAVVLDGMTGTKHSANSELVG 319 (568)
T ss_pred cccccccccCCCCCCCCCCCCccccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHH
Confidence 666677665553 1346667888899999999999999999999999999999999999999
Q ss_pred HhHHHHHhhhccCccCcccchhhHHHHhhCCCcchHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHhhccCCHHHH
Q 010128 383 MGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLELFTSLLYYTPIAILASIILSALPGLIDINEA 462 (517)
Q Consensus 383 ~GiaNi~~~lfg~~p~~~s~srS~v~~~~G~~T~ls~iv~a~~~ll~l~~l~~l~~~iP~~vLaaili~~~~~li~~~~~ 462 (517)
+|++|++||+|||+|++++++||++|.++|+|||++++++++++++.+++++|+++|+|+++||+++++++++|+|++.+
T Consensus 320 ~G~aNi~~~~fgg~p~~~s~srSa~n~~aGarT~la~iv~a~~~ll~ll~l~~ll~~iP~~vLa~ili~~~~~m~~~~~~ 399 (568)
T PRK11660 320 QGLGNIVAPFFGGITATAAIARSAANVRAGATSPISAVIHALLVLLALLVLAPLLSYLPLSAMAALLLMVAWNMSEAHKV 399 (568)
T ss_pred HhHHHHHHHHhCcccccchHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHhc-CChhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcCCcc
Q 010128 463 INIYK-VDKLDFLACIGAFLGVLFASVEIGLLAAVIFLCKKIFFPLEGIS 511 (517)
Q Consensus 463 ~~l~k-~~~~d~~i~~~~~~~~~~~~~~~Gi~~Gv~~s~~~~l~~~~~~~ 511 (517)
+++|| .+|.|+.+|+.+++++++++++.|+++|+++|++.+++|+++.+
T Consensus 400 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~Gi~~s~~~~~~~~~~~~ 449 (568)
T PRK11660 400 VDLLRHAPKDDIIVMLLCMSLTVLFDMVIAISVGIVLASLLFMRRIAEMT 449 (568)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 88776 68999999999999999999999999999999999999997653
No 5
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=1e-50 Score=406.90 Aligned_cols=280 Identities=38% Similarity=0.602 Sum_probs=255.9
Q ss_pred HHhhhhhhHHhhccHhHHHHHHHHHHHHHHHHhhhhhhCccccCCCccHHHHHHHHHhcccccCcchHHHHHHHHHHHHH
Q 010128 195 FGLFRLGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHHSYWYPLNFVLGCSFLIFL 274 (517)
Q Consensus 195 lg~lrlg~l~~fip~pVi~Gf~~gigi~I~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~l~~l 274 (517)
+|++|+|++++|+|+||+.||++|+|++|+.+|+|.++|++.....++..+.+.++++.+++. +||.++++++++++++
T Consensus 1 lGllrlG~l~~~ip~pVi~Gf~~g~ai~I~~~Ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l 79 (280)
T PF00916_consen 1 LGLLRLGFLVRFIPRPVISGFLAGIAILIIFSQLPNLLGIPVVPSHEGLFSFIRALFQLISTI-TNWPTLAIGLVALVFL 79 (280)
T ss_pred CccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhc-cchhhhhhhhHHHHHH
Confidence 589999999999999999999999999999999999999985334445555566666666652 4899999999999999
Q ss_pred HHHHHhhhccccccccCcchhHHHHHHHHHHHHHhcccCCCeeeeeccccCCCCCCCCccCCchhhHHHHHHHHHHHHHH
Q 010128 275 LIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKHIKGGLNPSSAHQLQLTGPHLGQTAKIGLISAVV 354 (517)
Q Consensus 275 l~~~~~~~~~~~~~~~~~~~~Li~ii~~t~i~~~~~~~~~~~~~vg~ip~glp~~~~p~~~~~~~~~~~~~~~~~~i~iv 354 (517)
...+++.++++++.+.+.|.+++++++++++++.++.+.++++.+|++|.++|++.+|+.+++++.+.+.++.++.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~p~~li~vv~~~~~~~~~~~~~~~v~~~~~i~~~lp~~~~p~~~~~~~~~~~~~~~a~~ia~v 159 (280)
T PF00916_consen 80 LIIRLLPKRLPSRFWPPIPAPLIVVVLGTLLSWLFLLDKYGVAIVGEIPSGLPPPSLPSFDISWSLILDLLPTALAIAIV 159 (280)
T ss_pred hhhhhhhhhccccccccccccceeeehhhhhhhhhhhccccccccccccccCccccCcccccccccccccchhHHHHHHH
Confidence 99888887777777777889999999999999999888889999999999999999995455556688899999999999
Q ss_pred HHHHHHHHHHHhhhhcCCcCCCchHHHHHhHHHHHhhhccCccCcccchhhHHHHhhCCCcchHHHHHHHHHHHHHHHhh
Q 010128 355 ALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLELFT 434 (517)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~d~nqEL~a~GiaNi~~~lfg~~p~~~s~srS~v~~~~G~~T~ls~iv~a~~~ll~l~~l~ 434 (517)
+++|++.++|++++++++++|.||||+++|++|+++|+|||+|++++++||.+|+++|+|||++++++++++++++++++
T Consensus 160 ~~~~s~~~~~~~~~~~~~~~d~n~El~a~G~aNi~s~~~gg~p~~~s~srs~~~~~~Ga~t~~s~~~~~~~~l~~l~~~~ 239 (280)
T PF00916_consen 160 GFIESLLIAKSIAKKTGYRIDPNQELIALGLANIVSGLFGGMPGSGSFSRSAVNYRAGARTRLSGLISALFVLLVLLFLA 239 (280)
T ss_pred HHHHHHHhhhhhcccccccCCcHHHHHHhhhccccchhhcccccccccccchHHHhcCcceeehhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHhhccCCHHHHHHHhcCChhhHHH
Q 010128 435 SLLYYTPIAILASIILSALPGLIDINEAINIYKVDKLDFLA 475 (517)
Q Consensus 435 ~l~~~iP~~vLaaili~~~~~li~~~~~~~l~k~~~~d~~i 475 (517)
|+++|+|+++||+++++++++|+|+++++++||.+|.|+++
T Consensus 240 ~~l~~iP~~~La~ili~~~~~l~~~~~~~~~~~~~~~d~~i 280 (280)
T PF00916_consen 240 PLLAYIPKAVLAAILIVVGISLIDWSSLRRLWRVSKADFLI 280 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCChhheEC
Confidence 99999999999999999999999999999999999999863
No 6
>PRK10720 uracil transporter; Provisional
Probab=99.97 E-value=3.7e-29 Score=263.64 Aligned_cols=374 Identities=13% Similarity=0.103 Sum_probs=278.7
Q ss_pred hhHHHHhhcccccccccccCChhhhHhhHHHHHHHHHHHHHHHHHHHHhhCCCcchhhHHhhhhhHHHHhccC-CCcccc
Q 010128 72 RSAFSFLRGLFPILNWGRNYKASKFKSDLMAGLTLASLSIPQSIGYANLAKLDPQYGLYTSVIPPLIYALMGS-SREIAI 150 (517)
Q Consensus 72 ~~~~~~l~~~~p~~~wl~~y~~~~l~~Di~aGltv~~~~iPq~iaya~laglpp~~gL~s~~i~~liyalfGs-s~~~~~ 150 (517)
+.....+||++-++ .+.+.+|..+ |+++...++.+.++++++.+++. +.++..
T Consensus 15 ~~~~lglQhvl~m~--------------------~~~i~~Pli~------gl~~~~~l~~sGi~TliQ~~~~g~rlP~~~ 68 (428)
T PRK10720 15 QTIPLSLQHLFAMF--------------------GATVLVPILF------HINPATVLLFNGIGTLLYLFICKGKIPAYL 68 (428)
T ss_pred HHHHHHHHHHHHHH--------------------HHHHHHHhhc------CCCHHHHHHHHHHHHHHHHHhccCccceEE
Confidence 33788999999887 6788888854 88899999999999999998764 668888
Q ss_pred ch-hHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhh--hh--hhHHhhccHhHHHHHHHHHHHHHHH
Q 010128 151 GP-VAVVSMLLSALMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLF--RL--GFLVDFLSHAAIVGFMAGAAIVIGL 225 (517)
Q Consensus 151 Gp-~a~~sl~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~Gv~~~llg~l--rl--g~l~~fip~pVi~Gf~~gigi~I~~ 225 (517)
|| ++..+.+.... ..+ ++.+.++.+++|+++++++++ |+ +++.|++|+.|++.+++.+|+.++.
T Consensus 69 G~sfa~i~~~~~~~--~~~---------~~~~lgav~v~Glv~ills~~~~~~g~~~l~~~fPp~v~G~~i~lIGl~L~~ 137 (428)
T PRK10720 69 GSSFAFISPVLLLL--PLG---------YEVALGGFIMCGVLFCLVALIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAG 137 (428)
T ss_pred eCcHHHHHHHHHHH--Hcc---------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHHHhHH
Confidence 98 45554444322 111 688899999999999999997 33 4689999999999999999999987
Q ss_pred HhhhhhhCccccCCCccHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHhhhccccccccCcchhHHHHHHHHHH
Q 010128 226 QQLKGLLGISHFTNKTDVVSVLGSVFSSLHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLI 305 (517)
Q Consensus 226 ~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~~~~~~Li~ii~~t~i 305 (517)
..+++ .|.... .. +. .++.++.+++.+++++++..+..|++.|.. +.++++++++++
T Consensus 138 ~~~~~-~g~~~~--~~-------------~~--~~~~~~~lalv~l~iil~~~~~~kg~~~~~-----~iLigIvvG~il 194 (428)
T PRK10720 138 VAAGM-AGLLPA--EG-------------QT--PDSKTIIISMVTLAVTVLGSVLFRGFLAII-----PILIGVLVGYAL 194 (428)
T ss_pred HHHhh-ccccCC--CC-------------cc--cchHHHHHHHHHHHHHHHHHHHhccHHHHh-----HHHHHHHHHHHH
Confidence 77753 332210 10 11 456778888888877776555555544432 569999999999
Q ss_pred HHHhcccCCCeeeeecc-ccCCCCCCCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC----cCCCchHH
Q 010128 306 VYLTKADKHGVKIVKHI-KGGLNPSSAHQLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGY----HLDGNKEM 380 (517)
Q Consensus 306 ~~~~~~~~~~~~~vg~i-p~glp~~~~p~~~~~~~~~~~~~~~~~~i~iv~~~~~~~~~~~~~~~~~~----~~d~nqEL 380 (517)
++.++.. +++.+++. +.++|.+..|+ |+...+..+++.++ +.+.|+++..++.++..++ +.|.|||+
T Consensus 195 a~~lG~~--d~~~v~~a~~~~lP~~~~P~--fd~~~il~l~~~~l----v~~~EsiG~~~a~~~~~~~~~~~~~~~~r~l 266 (428)
T PRK10720 195 SFAMGMV--DTTPIIEAHWFALPTFYTPR--FEWFAILTILPAAL----VVIAEHVGHLVVTANIVKKDLLRDPGLHRSM 266 (428)
T ss_pred HHHhcCC--CHHHhhcCccccCCCCCCCc--CcHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhCCCCCCCccccchH
Confidence 9998753 23333432 34566555554 45444555555444 4456666666555554443 44789999
Q ss_pred HHHhHHHHHhhhccCccCcccchhhHHHHhhCCCcchHHHHHHHHHHHHHHH--hhHHHHhhhHHHHHHHHHHHhhccCC
Q 010128 381 VAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLEL--FTSLLYYTPIAILASIILSALPGLID 458 (517)
Q Consensus 381 ~a~GiaNi~~~lfg~~p~~~s~srS~v~~~~G~~T~ls~iv~a~~~ll~l~~--l~~l~~~iP~~vLaaili~~~~~li~ 458 (517)
+++|++|+++|+||++|++++..+..+...+|.++|....+++++++++.++ ++++++.||.+|+||+.+ +.+++++
T Consensus 267 ~adGlatii~glfG~~p~tty~en~g~ia~T~v~sr~v~~~a~~~li~lg~~pk~~a~ia~iP~pVlgg~~i-~~fg~i~ 345 (428)
T PRK10720 267 FANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIIAILLSCVGKLAAAIQAIPLPVMGGVSL-LLYGVIG 345 (428)
T ss_pred hhhhHHHHHHHhcCCCCccccccccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHH
Confidence 9999999999999999999999999999999999999999999988888765 999999999999999999 7999999
Q ss_pred HHHHHHHhc--CChh---hHHHH-----------HHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcCCcccce
Q 010128 459 INEAINIYK--VDKL---DFLAC-----------IGAFLGVLFASVEIGLLAAVIFLCKKIFFPLEGISLSI 514 (517)
Q Consensus 459 ~~~~~~l~k--~~~~---d~~i~-----------~~~~~~~~~~~~~~Gi~~Gv~~s~~~~l~~~~~~~~~~ 514 (517)
..+++.+|+ .+.. +..+. ..++...+..|+..|..+|++++++...+|+-|-+..+
T Consensus 346 ~~Gi~~l~~~~~~~~~~~n~~i~~~~l~~g~~~~~~~~~~~~~~gi~~g~~~ai~Lnlll~~~~~~~~~~~~ 417 (428)
T PRK10720 346 ASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKVNIGAAELKGMALATIVGIGLSLIFKLISKLRPEEEV 417 (428)
T ss_pred HHHHHHHHHccCCCCcccchhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcccccccCCccc
Confidence 999999964 4422 22321 12223334468889999999999999988887766544
No 7
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=99.97 E-value=8.5e-29 Score=260.59 Aligned_cols=331 Identities=16% Similarity=0.158 Sum_probs=249.3
Q ss_pred HHHHHHHHHHHHHHhhCCCc-------chhhHHhhhhhHHHH----hccCCCccccchhHH-HHHHHHHHHHhhcCCCCC
Q 010128 106 LASLSIPQSIGYANLAKLDP-------QYGLYTSVIPPLIYA----LMGSSREIAIGPVAV-VSMLLSALMQNVQDPAAD 173 (517)
Q Consensus 106 v~~~~iPq~iaya~laglpp-------~~gL~s~~i~~liya----lfGss~~~~~Gp~a~-~sl~~~~~v~~~~~~~~~ 173 (517)
.+.+.+|..++-+ .|+|+ +..++++.++++++. .+|++.++..||... .+.+.. ...++
T Consensus 10 ~~~i~~p~i~~~a--~gl~~~~~~~~i~at~l~sgi~tllq~~~~~~~G~~~P~~~g~s~a~~~~~~~-~~~~~------ 80 (406)
T TIGR03173 10 AGAVAVPLIVGGA--LGLSAEQTAYLISADLFACGIATLIQTLGIGPFGIRLPVVQGVSFAAVGPMIA-IGAGG------ 80 (406)
T ss_pred HHHHHHHHHHHhh--cCCCHHHHHHHHHHHHHHHHHHHHHHhccccccCCccceeecCcHHHHHHHHH-Hhhhh------
Confidence 4677888887654 38887 478899999999997 679999999999553 333332 22222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccHhHHHHHHHHHHHHHHHHhhhhhhCccccCCCccHHHHHHHHHhc
Q 010128 174 PVAYRKLVFTVTFFAGVFQSVFGLFRLGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSVFSS 253 (517)
Q Consensus 174 ~~~~~~~~~~~~~l~Gv~~~llg~lrlg~l~~fip~pVi~Gf~~gigi~I~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~ 253 (517)
.++.+.++.+++|++++++|. +++++.|++|+.|++.++..+|+.+...++++..|... ..
T Consensus 81 ---~~~~~~ga~~v~Gii~illg~-~~~~l~~~iPp~v~G~~i~~IGl~l~~~~~~~~~g~~~---~~------------ 141 (406)
T TIGR03173 81 ---GLGAIFGAVIVAGLFVILLAP-FFSKLVRFFPPVVTGTVITLIGLSLMPVAINWAAGGAG---AP------------ 141 (406)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHhccCCC---cc------------
Confidence 278899999999999999995 68999999999998889999999999999988765431 00
Q ss_pred ccccCcchHHHHHHHHHHHHHHHHHHhhhccccccccCcchhHHHHHHHHHHHHHhcccCCCeeeeecccc-CCCC---C
Q 010128 254 LHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKHIKG-GLNP---S 329 (517)
Q Consensus 254 ~~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~~~~~~Li~ii~~t~i~~~~~~~~~~~~~vg~ip~-glp~---~ 329 (517)
+. .++.++.+++.+++++++++++.|+..| .++.++++++++++++.++..+ .+.+++.|. .+|. +
T Consensus 142 -~~--~~~~~~~l~l~~l~~~il~~~~~~~~~~-----~~aiLi~ivvg~iva~~~g~~~--~~~i~~~~~~~~P~~~~~ 211 (406)
T TIGR03173 142 -DF--GSPQNLGLALLTLVIILLLNRFGKGFLR-----SIAVLLGLVVGTIVAAALGMVD--FSGVAEAPWFALPTPFHF 211 (406)
T ss_pred -cc--cchHHHHHHHHHHHHHHHHHHHhhhHHH-----HhHHHHHHHHHHHHHHHhcCCC--chhhccCCeeeCCCCCcC
Confidence 11 4556677888887777776655554332 2378999999999999987522 222333332 2332 2
Q ss_pred CCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcCC---CchHHHHHhHHHHHhhhccCccCcccchhhH
Q 010128 330 SAHQLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLD---GNKEMVAMGFMNIVGSLTSCYVATGSFSRTA 406 (517)
Q Consensus 330 ~~p~~~~~~~~~~~~~~~~~~i~iv~~~~~~~~~~~~~~~~~~~~d---~nqEL~a~GiaNi~~~lfg~~p~~~s~srS~ 406 (517)
..|+ |+...+ ...+.+++++++|+++..++.+++.|++.| .|||+.++|++|+++++||++|+++...+++
T Consensus 212 ~~P~--f~~~~~----~~~~~~~lv~~~esig~~~a~~~~~g~~~~~~~~~~~l~~~Gi~~i~aglfG~~p~t~~~~~~~ 285 (406)
T TIGR03173 212 GAPT--FDLVAI----LTMIIVYLVSMVETTGDFLALGEITGRPITEKDLAGGLRADGLGSALGGLFNTFPYTSFSQNVG 285 (406)
T ss_pred CCCe--eCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhccchHHhccHHHHHHHHhCCCCCcchhhhHH
Confidence 3343 333322 334557889999999999999988887665 4799999999999999999999887555567
Q ss_pred HHHhhCCCcchHHHHHHHHHHHHHHH--hhHHHHhhhHHHHHHHHHHHhhccCCHHHHHHHhcCChh---hHHHHHHHHH
Q 010128 407 VNFSAGCQTVVSNIVMAITVLLSLEL--FTSLLYYTPIAILASIILSALPGLIDINEAINIYKVDKL---DFLACIGAFL 481 (517)
Q Consensus 407 v~~~~G~~T~ls~iv~a~~~ll~l~~--l~~l~~~iP~~vLaaili~~~~~li~~~~~~~l~k~~~~---d~~i~~~~~~ 481 (517)
++..+|+|||++++++|++++++.++ ++++++++|+++++++++ +.++++....++.++|.++. +..+.-+++.
T Consensus 286 ~~~~tg~~sr~~~~~~~~~lil~~l~~~~~~l~~~iP~~vlgg~~l-~~~~~i~~~g~~~l~~~~~~~~rn~~i~g~~~~ 364 (406)
T TIGR03173 286 LVQLTGVKSRYVVAAAGVILVLLGLFPKLAALVASIPQPVLGGAGL-VMFGMVAASGIRILSKVDFDRRRNLLIVAVSLG 364 (406)
T ss_pred HHHHhCCCchHhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHHhCcccCcceehhhHHHHH
Confidence 88999999999999999999888776 899999999999999877 48999998888888876654 4444444443
No 8
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=99.97 E-value=1.1e-28 Score=259.93 Aligned_cols=349 Identities=14% Similarity=0.134 Sum_probs=269.3
Q ss_pred hHHHHhhcccccccccccCChhhhHhhHHHHHHHHHHHHHHHHHHHHhhCCCcc-------hhhHHhhhhhHHHHhccCC
Q 010128 73 SAFSFLRGLFPILNWGRNYKASKFKSDLMAGLTLASLSIPQSIGYANLAKLDPQ-------YGLYTSVIPPLIYALMGSS 145 (517)
Q Consensus 73 ~~~~~l~~~~p~~~wl~~y~~~~l~~Di~aGltv~~~~iPq~iaya~laglpp~-------~gL~s~~i~~liyalfGss 145 (517)
.....+||++-++ .+.+.+|..++-+. +++. ..+..+.++++++++.+..
T Consensus 7 ~~~lglQh~l~~~--------------------~~~i~~p~iv~~~~---l~~~~~~~li~at~~~sgi~Tllq~~~~~~ 63 (415)
T TIGR00801 7 TLVLGLQHLLAMF--------------------GGTVLVPLLVGLAP---LSAEQTQYLVSISLLTSGIGTLLQLFRTGG 63 (415)
T ss_pred HHHHHHHHHHHHH--------------------HHHHHHHHHHhccc---CCHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 3677889988877 78899999888665 4443 6788999999999998876
Q ss_pred C---ccccchh-HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhh--hh--hhHHhhccHhHHHHHHH
Q 010128 146 R---EIAIGPV-AVVSMLLSALMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLF--RL--GFLVDFLSHAAIVGFMA 217 (517)
Q Consensus 146 ~---~~~~Gp~-a~~sl~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~Gv~~~llg~l--rl--g~l~~fip~pVi~Gf~~ 217 (517)
+ ....|+. +.++...... .+++ ++.+....+++|+++++++.+ |+ +++.|++|+.|...++.
T Consensus 64 ~~~lp~~~G~sfa~i~~~~~~~-~~~~---------~~~~~g~~i~~gl~~~ll~~~~~~~~~~~i~~~~Pp~v~g~iv~ 133 (415)
T TIGR00801 64 QIGLPSYLGSSFAFVSPMIAIG-SGLG---------IPAIMGALIATGLVYTLLSLLIKKLGPRWLMKLFPPVVTGPVVM 133 (415)
T ss_pred ceeeeeeecCcHHHHHHHHHHH-hccC---------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchhHHHhHH
Confidence 6 6777885 6655444322 1111 678899999999999999985 44 46799999999999999
Q ss_pred HHHHHHHHHhhhhhhCccccCCCccHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHhhhccccccccCcchhHH
Q 010128 218 GAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLL 297 (517)
Q Consensus 218 gigi~I~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~~~~~~Li 297 (517)
++|+.++...++++.|.....+..+ . .|+.++.+++.+++++++.+++.|++-|. ++.++
T Consensus 134 ~IGl~L~~i~l~~~~g~~~~~~~~~-------------~--~~~~~~~vg~~~l~~~vl~~~~~~g~~~~-----~aiLi 193 (415)
T TIGR00801 134 LIGLSLIPVAVKMAAGGEAAMSSAT-------------Y--GSLENLGVAFVVLALIILLNRFGKGFLKS-----ISILI 193 (415)
T ss_pred HHHHHHHHHHHHHhccCCCcccccc-------------c--CchhhHHHHHHHHHHHHHHHHHHhhHHHH-----HHHHH
Confidence 9999999999999887753111111 1 35667888888888877776655554322 37899
Q ss_pred HHHHHHHHHHHhcccCCCeeeeecccc-CCCCCCCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcCC-
Q 010128 298 SVILSTLIVYLTKADKHGVKIVKHIKG-GLNPSSAHQLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLD- 375 (517)
Q Consensus 298 ~ii~~t~i~~~~~~~~~~~~~vg~ip~-glp~~~~p~~~~~~~~~~~~~~~~~~i~iv~~~~~~~~~~~~~~~~~~~~d- 375 (517)
++++++++++.++..+. .-+.+.|. ++|.+..|..+|+.. .+...+.++++.++|+++..++++++.|++.|
T Consensus 194 giv~g~i~a~~lg~~~~--~~v~~~~~~~lP~~~~~g~~f~~~----~~~~~~~i~lv~~~es~g~~~a~a~~~g~~~~~ 267 (415)
T TIGR00801 194 GILVGYILALFMGIVDF--SPVIDAPWFSLPTPFTFGPSFEWP----AILTMLPVAIVSLVESIGDITATADVSGRDLSG 267 (415)
T ss_pred HHHHHHHHHHHcCCccc--hhhccCcccccCCccCCCceecHH----HHHHHHHHHHHHHHHhhhHHHHHHHHhCCCCCC
Confidence 99999999999875322 11233332 455443332345543 33344668899999999999999999988664
Q ss_pred ---CchHHHHHhHHHHHhhhccCccCcccchhhHHHHhhCCCcchHHHHHHHHHHHHHHH--hhHHHHhhhHHHHHHHHH
Q 010128 376 ---GNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLEL--FTSLLYYTPIAILASIIL 450 (517)
Q Consensus 376 ---~nqEL~a~GiaNi~~~lfg~~p~~~s~srS~v~~~~G~~T~ls~iv~a~~~ll~l~~--l~~l~~~iP~~vLaaili 450 (517)
.|||+.++|++|+++|+||++|.+++.+|++++..+|++||.+..++|++++++.++ ++++++++|.+++|++++
T Consensus 268 ~~~~~r~l~adGl~~i~aglfG~~p~t~~sen~g~~~~T~~~sr~~~~~~a~~~i~~~l~pk~~~l~~~iP~~vlgg~~l 347 (415)
T TIGR00801 268 DPRLHRGVLADGLATLLAGLFGGFPNTTFAQNIGVIALTRVASRWVIVGAAVILIALGFFPKIAALITSIPSPVLGGASI 347 (415)
T ss_pred CccccchHHHhhHHHHHHHhcCCCCCcchhhhheeeeecCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999999 999999999999999998
Q ss_pred HHhhccCCHHHHHHHhcCChh---hHHHHHHHHH
Q 010128 451 SALPGLIDINEAINIYKVDKL---DFLACIGAFL 481 (517)
Q Consensus 451 ~~~~~li~~~~~~~l~k~~~~---d~~i~~~~~~ 481 (517)
+.++++...+++.+++.+.+ +..+..+++.
T Consensus 348 -~~~~~i~~~gi~~l~~~~~~~~r~~~i~~~s~~ 380 (415)
T TIGR00801 348 -VMFGMIAASGIRILIRNKLDNRRNRNIIAASVG 380 (415)
T ss_pred -HHHHHHHHHHHHHHHhCccCcccceehHHHHHH
Confidence 68999999999999876543 3444444333
No 9
>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]
Probab=99.97 E-value=1.6e-27 Score=244.34 Aligned_cols=384 Identities=18% Similarity=0.231 Sum_probs=295.5
Q ss_pred HHHhhcccccccccccCChhhhHhhHHHHHHHHHHHHHHHHHHHH--------hhCCCcc----hhhHHhhhhhHHHHhc
Q 010128 75 FSFLRGLFPILNWGRNYKASKFKSDLMAGLTLASLSIPQSIGYAN--------LAKLDPQ----YGLYTSVIPPLIYALM 142 (517)
Q Consensus 75 ~~~l~~~~p~~~wl~~y~~~~l~~Di~aGltv~~~~iPq~iaya~--------laglpp~----~gL~s~~i~~liyalf 142 (517)
++.++++|.+.| +.++.|.|++||+|+.+ +|+|-. -+|+|.. ....+++++++.++++
T Consensus 3 ~~~~~~~F~l~~-----~~t~vrtEiiAGlTTFl-----tM~YIl~VnP~IL~~ag~~~~av~~AT~l~a~~gs~~mgl~ 72 (436)
T COG2252 3 KGDLDRFFKLKE-----HGTTVRTEVIAGLTTFL-----TMAYIVFVNPQILGAAGMPVGAVFVATCLAAAIGSIAMGLY 72 (436)
T ss_pred hhHHHHHhCccc-----cCchHHHHHHHHHHHHH-----HHHHhheecHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 356777887775 66789999999999997 555533 2677744 2345678899999999
Q ss_pred cCCCccccchhHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhh-HHhhccHhHHHHHHHHHHH
Q 010128 143 GSSREIAIGPVAVVSMLLSALMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRLGF-LVDFLSHAAIVGFMAGAAI 221 (517)
Q Consensus 143 Gss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~Gv~~~llg~lrlg~-l~~fip~pVi~Gf~~gigi 221 (517)
.+.|....-.++.++.....++..++-+ ||.+..+.|++|+++++++++++++ ++|.+|+++..+..+|+|+
T Consensus 73 An~P~alapgmglnAfFaftvv~~~gi~-------wq~AL~aVF~sGiif~ils~t~iR~~ii~~IP~~lk~ai~aGIGl 145 (436)
T COG2252 73 ANLPIALAPGMGLNAFFAFTVVLGMGLS-------WQVALGAVFLSGIIFLLLSLTGIREWIINAIPRSLKLAIGAGIGL 145 (436)
T ss_pred HcCchhhcchhhHHHHHHHHHHHhcCCc-------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHH
Confidence 9877655444999999999998887633 8999999999999999999999966 8999999999999999999
Q ss_pred HHHHHhhhhhhCccccCCCccHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHhhhccccccccCcchhHHHHHH
Q 010128 222 VIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVIL 301 (517)
Q Consensus 222 ~I~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~~~~~~Li~ii~ 301 (517)
+|..-.++ -.|+-. .++... -.+.+ .+.+.+.+++..+++...+.. +|.+. +.+++++.
T Consensus 146 Fia~IgL~-~~Givv-~~~~tl--------v~LG~--~~~p~vll~i~G~~l~~~L~~--~~i~G-------aili~i~~ 204 (436)
T COG2252 146 FIALIGLK-NAGIVV-ANPATL--------VALGD--FTSPGVLLAILGLLLIIVLVS--RKIKG-------AILIGILV 204 (436)
T ss_pred HHHHHHHh-hCCeEE-ecCcce--------EEeec--CCCchHHHHHHHHHHHHHHHH--hhccH-------hhhHHHHH
Confidence 99999888 456622 112211 12222 333445555555544444332 45554 66889999
Q ss_pred HHHHHHHhcccCCCeeeeeccccCCCCCCCCccCCch-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC------cC
Q 010128 302 STLIVYLTKADKHGVKIVKHIKGGLNPSSAHQLQLTG-PHLGQTAKIGLISAVVALTEAIAVGRSFASIKGY------HL 374 (517)
Q Consensus 302 ~t~i~~~~~~~~~~~~~vg~ip~glp~~~~p~~~~~~-~~~~~~~~~~~~i~iv~~~~~~~~~~~~~~~~~~------~~ 374 (517)
.+++++.++.........+..|+-. +.+.+.|+.. ......++..+...++.++|++++-...+++.|. ..
T Consensus 205 ~t~~g~~~g~~~~~~~~~~~~p~~~--~~~~~~d~~~~~~~~~~~~~if~f~~~~~FD~~GTl~gv~~~ag~~~~~g~~~ 282 (436)
T COG2252 205 TTILGIILGIDVHFGGLVGAPPSLS--PIFGQLDLSGNLSLAAFAPVIFTFFFVDLFDTLGTLIGVASKAGLLDKNGKMP 282 (436)
T ss_pred HHHHHHHhcccccccccccCCCCcc--chhhHhhhccchhhHHHHHHHHHHHHHHHhcchHHHHHHHHhcCCcCCCCCcc
Confidence 9999999885333222233333322 2223444443 2234556677788899999999888887766442 24
Q ss_pred CCchHHHHHhHHHHHhhhccCccCcccchhhHHHHhhCCCcchHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHhh
Q 010128 375 DGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLELFTSLLYYTPIAILASIILSALP 454 (517)
Q Consensus 375 d~nqEL~a~GiaNi~~~lfg~~p~~~s~srS~v~~~~G~~T~ls~iv~a~~~ll~l~~l~~l~~~iP~~vLaaili~~~~ 454 (517)
|.+|.+.+++++.++|+++|+.|++ +|-+|+...+.|+||.++.++.++++++. +|++|+.+.+|..+.++.+++++.
T Consensus 283 ~~~~al~~D~v~t~~ga~~GtS~~t-~yIESaaGva~GgrTGltavv~g~lFl~~-lf~~Pl~~~vP~~AtapaLi~vG~ 360 (436)
T COG2252 283 RIGKALLADSVATVVGALFGTSTVT-AYIESAAGVAAGGRTGLTAVVTGLLFLLS-LFFSPLAALVPGYATAPALIIVGA 360 (436)
T ss_pred ccchHHHHhHHHHHHHHhcCCcchh-hhhhcccccccccccccHHHHHHHHHHHH-HHHHHHHHhCcHhhhhHHHHHHHH
Confidence 6889999999999999999999955 69999999999999999999999999999 699999999999999999999999
Q ss_pred ccCCHHHHHHHhcCChhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 010128 455 GLIDINEAINIYKVDKLDFLACIGAFLGVLFASVEIGLLAAVIFLCKKIFF 505 (517)
Q Consensus 455 ~li~~~~~~~l~k~~~~d~~i~~~~~~~~~~~~~~~Gi~~Gv~~s~~~~l~ 505 (517)
.|. ..+.++|+.|+.....+|++.+++.+.+.+.-|+.++++.|..
T Consensus 361 lM~-----~~v~~id~~d~~ea~PaF~tiv~mplTySIa~Gia~Gfi~y~i 406 (436)
T COG2252 361 LML-----SSVKQIDWSDFTEAVPAFLTIVMMPLTYSIADGIAFGFISYVI 406 (436)
T ss_pred HHH-----hhhccCCchhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 888 6788999999999999999999999999999999999877654
No 10
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=99.94 E-value=2.1e-24 Score=227.52 Aligned_cols=331 Identities=14% Similarity=0.154 Sum_probs=238.5
Q ss_pred hhhHHHHhhcccccccccccCChhhhHhhHHHHHHHHHHHHHHHHHHHHhhCCCcchhhHHhhhhhHHHH-hccCCCccc
Q 010128 71 RRSAFSFLRGLFPILNWGRNYKASKFKSDLMAGLTLASLSIPQSIGYANLAKLDPQYGLYTSVIPPLIYA-LMGSSREIA 149 (517)
Q Consensus 71 ~~~~~~~l~~~~p~~~wl~~y~~~~l~~Di~aGltv~~~~iPq~iaya~laglpp~~gL~s~~i~~liya-lfGss~~~~ 149 (517)
++.....+||++-++ .+.+.+|.-+ |+++...+.++.++++++. .+|++.++.
T Consensus 30 ~~~~~~GlQh~lam~--------------------~~~v~~Plil------gl~~~~tl~~sGi~TllQ~~~~G~rlP~v 83 (429)
T TIGR03616 30 AQTIVMGLQHAVAMF--------------------GATVLMPLLM------GFDPNLTILMSGIGTLLFFLITGGRVPSY 83 (429)
T ss_pred HHHHHHHHHHHHHHH--------------------HHHHHHHHHh------CCCHhHHHHHHHHHHHHHHHHhCCCceeE
Confidence 334778888888876 6677788775 6888899999999999997 579999999
Q ss_pred cchhHHH-HHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhh----hhHHhhccHhHHHHHHHHHHHHHH
Q 010128 150 IGPVAVV-SMLLSALMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRL----GFLVDFLSHAAIVGFMAGAAIVIG 224 (517)
Q Consensus 150 ~Gp~a~~-sl~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~Gv~~~llg~lrl----g~l~~fip~pVi~Gf~~gigi~I~ 224 (517)
.|+.... ..++... ... ..+++.+++.+.++++++|++++++|++++ +++.|++|+.|.+-.+..+|+.++
T Consensus 84 ~G~sf~f~~~~~~~~--~~~--~~~~~~~~~~a~ga~iv~G~i~~llg~~~~~~~~~~l~r~fpPvV~G~vv~lIGlsL~ 159 (429)
T TIGR03616 84 LGSSAAFVGAVIAAT--GYN--GQGTNPNIALALGGIIACGLVYAAIGLVVMRTGTRWIERLMPPVVTGAVVMAIGLNLA 159 (429)
T ss_pred EcCcHHHHHHHHHHH--hhc--ccCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 9995444 3343321 111 111223467888999999999999999876 568899999999999999999998
Q ss_pred HHhhhhhhCccccCCCccHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHhhhccccccccCcchhHHHHHHHHH
Q 010128 225 LQQLKGLLGISHFTNKTDVVSVLGSVFSSLHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTL 304 (517)
Q Consensus 225 ~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~~~~~~Li~ii~~t~ 304 (517)
...+++..|- + . .+|. ++.+++.+++...+.|+.-|.. +.+++++++++
T Consensus 160 ~vg~~~~~~~-------~-----------~----~~~~----al~tl~~i~l~~l~~~~~l~~~-----avLiGivvG~i 208 (429)
T TIGR03616 160 PIAVKSVSAS-------G-----------F----DSWM----AVLTILCIGAVAVFTRGMLQRL-----LILVGLIAAYL 208 (429)
T ss_pred HHHHHhcccc-------c-----------c----ccHH----HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 8777653211 0 0 1232 2222323323233334443322 77999999999
Q ss_pred HHHHh----ccc-CCCeeee-eccccCCCCCCCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcCCC--
Q 010128 305 IVYLT----KAD-KHGVKIV-KHIKGGLNPSSAHQLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLDG-- 376 (517)
Q Consensus 305 i~~~~----~~~-~~~~~~v-g~ip~glp~~~~p~~~~~~~~~~~~~~~~~~i~iv~~~~~~~~~~~~~~~~~~~~d~-- 376 (517)
+++.+ +.. ..+.+.+ +.-+.++|++..|+ |+.+.+.. .+..+++.++|+++..++.++..+++.|+
T Consensus 209 va~~l~~~~g~~~~vd~s~v~~a~~~~lP~~~~p~--f~~~~il~----~~~~~lv~~~esiG~~~a~~~~~~~~~~~~i 282 (429)
T TIGR03616 209 AYFILTNVFGLGKAVDFSPISQAAWFGLPNFHTPV--FNANAMLL----IAPVALILVAENLGHFKAVAGMTGRNLDPYM 282 (429)
T ss_pred HHHHHhhhcCCCccccCcccccCccccCCcCCCce--EcHHHHHH----HHHHHHHHHHHhhHHHHHHHHHhCCCCCchh
Confidence 98875 211 1334333 22223566666554 34433333 34457788889998888888888777766
Q ss_pred chHHHHHhHHHHHhhhccCccCcccchhhHHHHhhCCCcchHHHHHHHHHHHHHHH--hhHHHHhhhHHHHHHHHHHHhh
Q 010128 377 NKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLEL--FTSLLYYTPIAILASIILSALP 454 (517)
Q Consensus 377 nqEL~a~GiaNi~~~lfg~~p~~~s~srS~v~~~~G~~T~ls~iv~a~~~ll~l~~--l~~l~~~iP~~vLaaili~~~~ 454 (517)
|||++++|++|+++|+||+.|.+.+..+..+...+|..||.....++++++++.++ ++.+++.||.+|+||+++ +.+
T Consensus 283 ~r~l~adGl~t~~agl~g~~p~tt~~en~g~i~~T~v~SR~v~~~a~~~lillgl~Pk~~al~~~IP~pVlgG~~i-~~f 361 (429)
T TIGR03616 283 GRAFVGDGLATMLSGSVGGTGVTTYAENIGVMAVTKVYSTLVFVAAAVFAILLGFSPKFGALIHTIPVAVLGGASI-VVF 361 (429)
T ss_pred ccchhhhhHHHHHHHhcCCCCCcceeeeeeeeeecCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHH
Confidence 79999999999999999999999998889999999999999998888887776654 556999999999999998 689
Q ss_pred ccCCHHHHHHH--hcCC
Q 010128 455 GLIDINEAINI--YKVD 469 (517)
Q Consensus 455 ~li~~~~~~~l--~k~~ 469 (517)
++++..+++.+ .|.|
T Consensus 362 g~i~~~Gi~~l~~~~~d 378 (429)
T TIGR03616 362 GLIAVAGARIWVQNKVD 378 (429)
T ss_pred HHHHHHHHHHHHhccCC
Confidence 99999998844 4544
No 11
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=99.94 E-value=2.4e-25 Score=230.06 Aligned_cols=348 Identities=15% Similarity=0.113 Sum_probs=264.8
Q ss_pred chhhhhHHHHhhcccccccccccCChhhhHhhHHHHHHHHHHHHHHHHHHHHhhCCCcc-------hhhHHhhhhhHHHH
Q 010128 68 QTWRRSAFSFLRGLFPILNWGRNYKASKFKSDLMAGLTLASLSIPQSIGYANLAKLDPQ-------YGLYTSVIPPLIYA 140 (517)
Q Consensus 68 ~~~~~~~~~~l~~~~p~~~wl~~y~~~~l~~Di~aGltv~~~~iPq~iaya~laglpp~-------~gL~s~~i~~liya 140 (517)
+..+. ....+||++-++ .+.+.+|.-++.+. ++++. +.|++|.+++++|.
T Consensus 14 ~~~~~-~~lglQH~lamf--------------------g~~V~VPlivg~a~--~l~~~~~~~Lis~~l~~~GiaTllq~ 70 (451)
T COG2233 14 PLGKL-LLLGLQHLLAMF--------------------GATVLVPLLVGLAL--GLSAEDTAYLISADLLASGIGTLLQL 70 (451)
T ss_pred ChHHH-HHHHHHHHHHHH--------------------hcchHhhHHhccCC--CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 788999999998 78899999886655 56643 66999999999999
Q ss_pred h----ccCCCccccch-hHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHhhccHhHHHH
Q 010128 141 L----MGSSREIAIGP-VAVVSMLLSALMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRLG-FLVDFLSHAAIVG 214 (517)
Q Consensus 141 l----fGss~~~~~Gp-~a~~sl~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~Gv~~~llg~lrlg-~l~~fip~pVi~G 214 (517)
+ +|..-+...|. ++.++.+.... +++++ ..+.+....+.+|++.++++.+ ++ |+.|++|+-|.+-
T Consensus 71 ~~~~~~g~~lP~~lG~sFafi~p~i~~~-~~~g~-------~~~~~~G~ii~ag~~~~li~~~-~~~~l~rlfPPvVtG~ 141 (451)
T COG2233 71 LGTGPGGSGLPSYLGSSFAFVAPMIAIG-GTTGD-------GIAALLGGIIAAGLVYFLISPI-VKIRLARLFPPVVTGP 141 (451)
T ss_pred hhccCcccCCCeeEechHHHHHHHHHHH-hccCC-------chHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCceEEe
Confidence 8 55566777787 66666665533 22221 1567788999999999999988 55 9999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhCccccCCCccHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHhhhccccccccCcch
Q 010128 215 FMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIA 294 (517)
Q Consensus 215 f~~gigi~I~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~~~~~ 294 (517)
++.-+|+.++...++++.|.....++.++ .+..++.+++.++++.++..++.|.+-|.. +
T Consensus 142 Vi~~IGlsL~~vai~~~~G~~~~~~~~~~---------------~~~~~l~la~~tl~~il~~~~f~~g~~~~i-----~ 201 (451)
T COG2233 142 VVLVIGLSLAPVAINMAGGGPGAAGNPDF---------------GSLENLGLALVTLLIILLINRFGKGFLRRI-----P 201 (451)
T ss_pred EeeeehhhhHHHHHHHhhCCCCCCCCccc---------------CchhHHHHHHHHHHHHHHHHHHhhhHHHHH-----H
Confidence 99999999999999999998643222222 566778889999888888777777665543 6
Q ss_pred hHHHHHHHHHHHHHhcccCCCeeeeecccc-CCCCCCCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc
Q 010128 295 PLLSVILSTLIVYLTKADKHGVKIVKHIKG-GLNPSSAHQLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYH 373 (517)
Q Consensus 295 ~Li~ii~~t~i~~~~~~~~~~~~~vg~ip~-glp~~~~p~~~~~~~~~~~~~~~~~~i~iv~~~~~~~~~~~~~~~~~~~ 373 (517)
.++++++++++++.++. .+.+-+.+-|. ++|.|..+...|++..+..+++++++..++...+..++++...++...+
T Consensus 202 ILiGlv~G~~la~~~G~--vdf~~v~~a~w~~~P~~~~fg~~F~~~ail~m~~v~iV~~~E~~G~i~A~~~itg~~~~~~ 279 (451)
T COG2233 202 ILIGLVVGYLLALFMGM--VDFSGVAEAPWFALPTPFYFGMAFDWGAILTMLPVAIVTIVEHTGDITATGEITGRDLDGK 279 (451)
T ss_pred HHHHHHHHHHHHHHhCC--cCccccccCceeeCCcccCCCeeecHHHHHHHHHHHHHHHHHHhhhhhhHHhHhCCcCccC
Confidence 79999999999999984 23333444444 4555544433667666666666544444444444444444443333333
Q ss_pred CCCchHHHHHhHHHHHhhhccCccCcccchhhHHHHhhCCCcchHHHHHHHHHHHHHHH--hhHHHHhhhHHHHHHHHHH
Q 010128 374 LDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLEL--FTSLLYYTPIAILASIILS 451 (517)
Q Consensus 374 ~d~nqEL~a~GiaNi~~~lfg~~p~~~s~srS~v~~~~G~~T~ls~iv~a~~~ll~l~~--l~~l~~~iP~~vLaaili~ 451 (517)
.+.+|.++++|++++++++||++|.|+..+|..+...+|.+||.....+|++++++.++ ++.+++.||.+|+||+.++
T Consensus 280 ~~l~rg~~aDGlat~iag~fg~~p~TtfaqNiGvv~lT~v~Sr~V~~~aavili~lgl~pk~~al~~sIP~pVlGGa~iv 359 (451)
T COG2233 280 PRLRRGLLADGLATLIAGLFGGFPNTTFAQNIGVVALTGVYSRYVIAGAAVILILLGLFPKFGALIQSIPSPVLGGAMLV 359 (451)
T ss_pred cccccceeeccHHHHHHHhcCCCCCCchhhceeeeeeccCChhHHHHHHHHHHHHHHhhHHHHHHHHhCChhhhhHHHHH
Confidence 56678999999999999999999999999999999999999999999999999998876 8899999999999999875
Q ss_pred HhhccCCHHHHHHHhcCCh
Q 010128 452 ALPGLIDINEAINIYKVDK 470 (517)
Q Consensus 452 ~~~~li~~~~~~~l~k~~~ 470 (517)
.++++....++.+-|.+.
T Consensus 360 -mFG~Ia~sGir~l~~~~~ 377 (451)
T COG2233 360 -LFGMIAASGIRILIRNKV 377 (451)
T ss_pred -HHHHHHHHHHHHHHhccc
Confidence 799998888887776443
No 12
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=99.92 E-value=1.9e-22 Score=211.39 Aligned_cols=347 Identities=14% Similarity=0.116 Sum_probs=251.1
Q ss_pred hHHHHhhcccccccccccCChhhhHhhHHHHHHHHHHHHHHHHHHHHhhCCCcc-------hhhHHhhhhhHHHHhccCC
Q 010128 73 SAFSFLRGLFPILNWGRNYKASKFKSDLMAGLTLASLSIPQSIGYANLAKLDPQ-------YGLYTSVIPPLIYALMGSS 145 (517)
Q Consensus 73 ~~~~~l~~~~p~~~wl~~y~~~~l~~Di~aGltv~~~~iPq~iaya~laglpp~-------~gL~s~~i~~liyalfGss 145 (517)
.....+||++-++ .+.+.+|..++=+. |+++. ..+..+.+++++++.+|++
T Consensus 10 ~~~lglQhvl~m~--------------------~~~i~vPliva~a~--gl~~~~~~~li~~~l~~sGIaTllQ~~~G~r 67 (433)
T PRK11412 10 SLLSGFQWFFFIF--------------------CNTVVVPPTLLSAF--QLPQSSLLTLTQYAFLATALACFAQAFCGHR 67 (433)
T ss_pred HHHHHHHHHHHHH--------------------HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3677888888876 78899999987664 88875 6788999999999999999
Q ss_pred Cccccchh-HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHhhccHhHHHHHHHHHHHHH
Q 010128 146 REIAIGPV-AVVSMLLSALMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFR-LGFLVDFLSHAAIVGFMAGAAIVI 223 (517)
Q Consensus 146 ~~~~~Gp~-a~~sl~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~Gv~~~llg~lr-lg~l~~fip~pVi~Gf~~gigi~I 223 (517)
.++..||. +....+......... ......+.........+++|++++++|..+ ++|+.|++|+-|.+-++.-+|+.+
T Consensus 68 lPiv~G~Sf~~~~~~~~i~~~~~~-~g~~~~~~~g~l~g~~i~~g~~~~~lg~~~~~~~l~r~fpPvV~G~vv~lIGlsL 146 (433)
T PRK11412 68 RAIMEGPGGLWWGTILTITLGEAS-RGTPINDIATSLAVGIALSGVVTILIGFSGLGHRLARLFTPMVMVVFMLLLGAQL 146 (433)
T ss_pred CeeeeCCchHHHHHHHHHHhcccc-cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhHhHHHHHHhh
Confidence 99999994 444444443221100 000011122333446899999999999998 799999999999999999999999
Q ss_pred HHHhhhhhhCccccCCCccHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHhhhccccccccCcchhHHHHHHHH
Q 010128 224 GLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILST 303 (517)
Q Consensus 224 ~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~~~~~~Li~ii~~t 303 (517)
+...++++.|.+.. ...+. ++ +++..+.+++.++.+++...++.|++-|.. +.++++++++
T Consensus 147 ~~~a~~~~~G~~~~-~~~~~-----------~~--~~~~~~~~a~~~l~~il~~~~~~~g~~~~~-----svLiGiv~G~ 207 (433)
T PRK11412 147 TTIFFKGMLGLPFG-IADPN-----------GK--IQLPPFGLSVAVMCLVLAMIIFLPQRIARY-----SLLVGTIVGW 207 (433)
T ss_pred HHHHHHHhcCCCcc-Ccccc-----------cc--cchHHHHHHHHHHHHHHHHHHHhhhHHHHH-----HHHHHHHHHH
Confidence 99999999886210 01110 11 334556677777777777666666655543 7799999999
Q ss_pred HHHH-HhcccCCCeeeeecccc-CCCCCCCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC----cCCCc
Q 010128 304 LIVY-LTKADKHGVKIVKHIKG-GLNPSSAHQLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGY----HLDGN 377 (517)
Q Consensus 304 ~i~~-~~~~~~~~~~~vg~ip~-glp~~~~p~~~~~~~~~~~~~~~~~~i~iv~~~~~~~~~~~~~~~~~~----~~d~n 377 (517)
+++. .++. +...+++.+. .+| +..|. +|++..+..++. ++++...|+++.-++.++..++ +.+.+
T Consensus 208 v~a~~~~g~---d~~~v~~a~w~~~p-fG~P~-~F~~~~il~~~~----~~lv~~~e~iG~~~a~~~~~~~~~~~~~~l~ 278 (433)
T PRK11412 208 ILWAFCFPS---SHSLSGELHWQWFP-LGSGG-ALEPGIILTAVI----TGLVNISNTYGAIRGTDVFYPQQGAGNTRYR 278 (433)
T ss_pred HHHHHHhCC---CcchhccCCceeec-CCCCC-ccCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCCCCCCcccc
Confidence 9854 5544 2223344332 122 23332 255544444443 4555556655555555544443 34668
Q ss_pred hHHHHHhHHHHHhhhccCccCcccchhhHHHHhhCCCcchHHHHHHHHHHHHHHH--hhHHHHhhhHHHHHHHHHHHhhc
Q 010128 378 KEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLEL--FTSLLYYTPIAILASIILSALPG 455 (517)
Q Consensus 378 qEL~a~GiaNi~~~lfg~~p~~~s~srS~v~~~~G~~T~ls~iv~a~~~ll~l~~--l~~l~~~iP~~vLaaili~~~~~ 455 (517)
|.++++|++|+++|+||++|.+...+|..+-..+|++||....++|+++++..++ ++.++..||.+|+||+.++ .++
T Consensus 279 rgi~~dGi~s~laglfg~~p~tt~sqNvGvi~~TgV~SR~v~~~aa~ilillgl~PK~~alia~IP~pVlGg~~~~-~Fg 357 (433)
T PRK11412 279 RSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTGDYRRRSFIYGSVMCLLVALIPALTRLFCSIPLPVSSAVMLV-SYL 357 (433)
T ss_pred cchhhccHHHHHHHhcCCCCCCchhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH-HHH
Confidence 9999999999999999999999999999999999999999999999999998877 8889999999999999876 788
Q ss_pred cCCHHHHHHHhcCChh
Q 010128 456 LIDINEAINIYKVDKL 471 (517)
Q Consensus 456 li~~~~~~~l~k~~~~ 471 (517)
++-...++.+.|.+..
T Consensus 358 ~I~~~Gi~~l~~~~~~ 373 (433)
T PRK11412 358 PLLGSALVFSQQITFT 373 (433)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 8877778887776543
No 13
>PF13792 Sulfate_tra_GLY: Sulfate transporter N-terminal domain with GLY motif
Probab=99.92 E-value=3.1e-25 Score=179.14 Aligned_cols=82 Identities=52% Similarity=0.987 Sum_probs=79.8
Q ss_pred cccccccccCCh-hhhHhhHHHHHHHHHHHHHHHHHHHHhhCCCcchhhHHhhhhhHHHHhccCCCccccchhHHHHHHH
Q 010128 82 FPILNWGRNYKA-SKFKSDLMAGLTLASLSIPQSIGYANLAKLDPQYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLL 160 (517)
Q Consensus 82 ~p~~~wl~~y~~-~~l~~Di~aGltv~~~~iPq~iaya~laglpp~~gL~s~~i~~liyalfGss~~~~~Gp~a~~sl~~ 160 (517)
||+++|+++|++ +++++|++||+|++++.+||+||||.+||+||++|||++++++++|++||+||++++||++.+++++
T Consensus 1 ~P~l~wl~~y~~k~~~~~D~~aGltva~~~iPq~~a~A~lAg~pp~~GLy~a~~~~liyalfG~s~~~~~Gp~a~~s~l~ 80 (84)
T PF13792_consen 1 FPILQWLPRYSWKSNLRGDLLAGLTVALVAIPQGMAYALLAGVPPIYGLYAAIIPPLIYALFGSSRHMIVGPTAAMSLLI 80 (84)
T ss_pred CCchhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeHHHHHHHHHHhhccCCCccccChHHHHHHHH
Confidence 799999999996 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 010128 161 SAL 163 (517)
Q Consensus 161 ~~~ 163 (517)
++.
T Consensus 81 ~~~ 83 (84)
T PF13792_consen 81 ASV 83 (84)
T ss_pred HHh
Confidence 875
No 14
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=99.88 E-value=3.5e-20 Score=194.17 Aligned_cols=341 Identities=18% Similarity=0.144 Sum_probs=206.8
Q ss_pred hhHHHHHHHH------HHHHHHHHHHHHhhCC--C----cchhhHHhhhhhHHHHh-ccCCCccccchh-HHHHHHHHHH
Q 010128 98 SDLMAGLTLA------SLSIPQSIGYANLAKL--D----PQYGLYTSVIPPLIYAL-MGSSREIAIGPV-AVVSMLLSAL 163 (517)
Q Consensus 98 ~Di~aGltv~------~~~iPq~iaya~lagl--p----p~~gL~s~~i~~liyal-fGss~~~~~Gp~-a~~sl~~~~~ 163 (517)
+++++|++-. ++.+|.-++.+ .|+ + ....+..+.++++++++ +|...++..||. +... ....
T Consensus 2 ~~i~~glQ~~l~m~~~~iv~P~il~~~--~g~~~~~~~li~at~l~sgi~Tllq~~~~g~~lpl~~G~s~~~~~--~~~~ 77 (389)
T PF00860_consen 2 KEILLGLQHFLAMFYIIIVVPLILAAA--FGLDADTAALISATFLVSGIATLLQGLPAGHRLPLVPGPSFAFIF--AFMI 77 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTS-------------HHHHHHHHHHHHHHHHHHTTT-----EEE-GGGHH--HHHG
T ss_pred ccHHHHHHHHHHHHHHHHHhHHHHhhc--ccccchhhHHHHHHHHHHHHHHHHHHhcCCCceecccccchhhhh--hhhc
Confidence 4556666554 44556555544 132 1 23678889999999999 888888888883 3332 1111
Q ss_pred HHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHhhccHhHHHHHHHHHHHHHHHHhhhhhhCccccCCCcc
Q 010128 164 MQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRLG-FLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTD 242 (517)
Q Consensus 164 v~~~~~~~~~~~~~~~~~~~~~~l~Gv~~~llg~lrlg-~l~~fip~pVi~Gf~~gigi~I~~~ql~~~~G~~~~~~~~~ 242 (517)
.... ..+....++.+.++.+++|++++++++++++ ++.|++|+.|..+++.++|+.+....+++..|.... .+.
T Consensus 78 ~~g~---~~~~~~~~~~~~g~~~i~gi~~~~l~~~g~~~~l~~~~pp~v~g~v~~~IGl~L~~~~~~~~~~~~~~-~~~- 152 (389)
T PF00860_consen 78 VIGM---AESGGYGLQAALGAVLISGILFILLGLTGLRKRLRRLFPPVVKGAVVLLIGLSLAPIGLKNAGGIWGN-PDG- 152 (389)
T ss_dssp GG--------HHHHHHHHHHHHHHHHHHHHHHHTT-SH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS----BTT-
T ss_pred cccc---ccchhhchhhhhhHHHHHHHHHHHHHHhchHHHHHHHhChhheEeeEeeehhhhhhhHhhcccccccc-ccc-
Confidence 1110 0122233688899999999999999999985 799999999999999999999999999998887632 111
Q ss_pred HHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHhhhccccccccCcchhHHHHHHHHHHHHHhcccCCCeeeeecc
Q 010128 243 VVSVLGSVFSSLHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKHI 322 (517)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~~~~~~Li~ii~~t~i~~~~~~~~~~~~~vg~i 322 (517)
... .++.....+..++++.+..+...+++.++. +.++++++++++++..+..+..-. +.+-
T Consensus 153 -----------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----ailigi~~g~i~~~~~g~~~~~~~-~~~~ 213 (389)
T PF00860_consen 153 -----------LLV--GDGKNLGLAVLTLLFILLLSLFLKGFLRKG-----AILIGIIAGWIVAAILGVVDFSPS-VSSA 213 (389)
T ss_dssp ------------B-----HHHHHHHHHHHHHHHHHHHSSSTTTTTH-----HHHHHHHHHHHHHHHHHHTTSSH--HHHS
T ss_pred -----------ccc--ccccccccccccchhhhhhhhhhhhhcccc-----cchhhhhhhhhhhhcccccccCcc-cccc
Confidence 000 334445556666655555554444443322 779999999999999873211100 2222
Q ss_pred cc-CCCCC-CCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC----cCCCchHHHHHhHHHHHhhhccCc
Q 010128 323 KG-GLNPS-SAHQLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGY----HLDGNKEMVAMGFMNIVGSLTSCY 396 (517)
Q Consensus 323 p~-glp~~-~~p~~~~~~~~~~~~~~~~~~i~iv~~~~~~~~~~~~~~~~~~----~~d~nqEL~a~GiaNi~~~lfg~~ 396 (517)
|. ++|.+ .+....|++ ..+...+..+++..+|+++.-.+.++..|. +.+.||.+.++|++|+++++||+.
T Consensus 214 ~~~~~p~~~~~g~p~f~~----~~i~~~~~~~lv~~~es~G~~~a~~~~~~~~~~~~~~~~r~l~~dg~~~~l~gl~G~~ 289 (389)
T PF00860_consen 214 PWFSLPSPFPFGWPSFDP----GAILTFLIFALVAMFESIGTIVAVARIAGKDDPRPPRIRRGLLADGLGTILAGLFGTS 289 (389)
T ss_dssp -SS--------------H----HHHHHHTHHHHHHHHHHHHHHHHHHHHHTS-TCCCCCHHHHHHHHHHHHHHHHHHT--
T ss_pred cccccccccccccccccH----HHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCCccchhhcccceeeeeeeeechhhcCC
Confidence 22 12211 111111333 334444556677777777766666655544 445789999999999999999999
Q ss_pred cCcccchhhHHHHhhCCCcchHHHHHHHHHHHHHHH--hhHHHHhhhHHHHHHHHHHHhhccCCHHHHHHHhcCChh
Q 010128 397 VATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLEL--FTSLLYYTPIAILASIILSALPGLIDINEAINIYKVDKL 471 (517)
Q Consensus 397 p~~~s~srS~v~~~~G~~T~ls~iv~a~~~ll~l~~--l~~l~~~iP~~vLaaili~~~~~li~~~~~~~l~k~~~~ 471 (517)
|.+.+..+.+.-..+|++||.++..++++.+++.++ ++|++..||.++++|..++ .++++-..+++.+.+.+..
T Consensus 290 ~~t~~~en~g~i~~t~v~Sr~~~~~a~~~~i~~~~~p~~~~l~~~IP~~v~gg~~lv-~~g~i~~~gi~~i~~~~~~ 365 (389)
T PF00860_consen 290 PTTTYSENAGGIAATGVASRRVGLTAGVILILFGLSPKFAPLFASIPSPVIGGPLLV-LFGMIMMSGIRNIDWVDLD 365 (389)
T ss_dssp -EEE-HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHH-HHHHHHHHHHHHHHHTTS-
T ss_pred CCccccccchhhhhhccccceeeeHHHHHHHHHhhHHHHHHHHHHHHHHHhccchHH-HHHHHHHHHhHhheecccC
Confidence 999988889999999999999999999988887665 8999999999998777654 3444434555555444443
No 15
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=99.63 E-value=1.5e-12 Score=145.43 Aligned_cols=343 Identities=13% Similarity=0.112 Sum_probs=233.7
Q ss_pred HHHHHHHHHHHHHHHhhC------CCcchhhHHhhhhhHHHHhccCCCccccchhHHHHHHHHHHHHhhcCCCCChHHHH
Q 010128 105 TLASLSIPQSIGYANLAK------LDPQYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQNVQDPAADPVAYR 178 (517)
Q Consensus 105 tv~~~~iPq~iaya~lag------lpp~~gL~s~~i~~liyalfGss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~~~~ 178 (517)
-+.+..+.-++||+.+.+ +...=-|.|+.+.+++|++||+.|-.++|+++.+.++...+..--. .....|+
T Consensus 377 fiyFA~L~PaIaFG~ll~~~T~g~~gv~E~Llstai~Giifslf~GQPL~IlG~TGPilvF~~~ly~~c~---~~~~~yl 453 (900)
T TIGR00834 377 FIYFAALSPAITFGGLLGEKTRNMMGVSELLISTAVQGVLFALLAAQPLLVVGFSGPLLVFEEAFFSFCE---SNGLEYL 453 (900)
T ss_pred HHHHHHhhHHhhHHHHHHHhhCCcchHHHHHHHHHHHHHHHhhhcCCceEEecCcccHHHHHHHHHHHHh---hcCCchH
Confidence 344566667788876532 3444559999999999999999999999999998887765544322 1123578
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHhhccHhHHHHHHHHHHHHHHHHhhhhhhCccccCC---CccHH---------HH
Q 010128 179 KLVFTVTFFAGVFQSVFGLFRLGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTN---KTDVV---------SV 246 (517)
Q Consensus 179 ~~~~~~~~l~Gv~~~llg~lrlg~l~~fip~pVi~Gf~~gigi~I~~~ql~~~~G~~~~~~---~~~~~---------~~ 246 (517)
...+...+.++++.++++.+...++++|+.+-.-..|-.=+++..+...++.+...-.... .++.. ..
T Consensus 454 ~~~~WigiW~~~~~~lla~~~~s~lvryiTRFTeEiFa~lIs~IFI~eai~~L~~~f~~~~~~~~~~~~~~~~~~~~~~~ 533 (900)
T TIGR00834 454 VGRVWIGLWLVLLVLLLVATEGSFLVRYISRFTQEIFSFLISLIFIYETFSKLIKIFQEHPLQVFYNTLFCVPPKPQGPS 533 (900)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccc
Confidence 8888999999999999999999999999999999999999999999998887754321000 00000 00
Q ss_pred H-----------HHH-----HhcccccCcchHHHHHHHHHHHHHHHHHHhhhc--ccc--ccccCcchhHHHHHHHHHHH
Q 010128 247 L-----------GSV-----FSSLHHSYWYPLNFVLGCSFLIFLLIARFIGRR--NKK--LFWLPAIAPLLSVILSTLIV 306 (517)
Q Consensus 247 ~-----------~~~-----~~~~~~~~~~~~~~~ig~~~l~~ll~~~~~~~~--~~~--~~~~~~~~~Li~ii~~t~i~ 306 (517)
. ... +...++ .-...+++.+.++.+.+.++.+++. +++ +..+...+..+++++.+.+.
T Consensus 534 ~~~~~~~~~~~~~~~~~~~~c~~~~~--~~llsliL~lgTf~~a~~L~~fk~s~yf~~~vR~~isDfgv~iaI~~~t~v~ 611 (900)
T TIGR00834 534 VSALLEKDCSKLGGTLGGNNCRFQPN--TALLSLVLMLGTFFLAMFLRKFKNSRYFPGKARRLIGDFGVPISILIMVLVD 611 (900)
T ss_pred ccccccccccccccccccccccccch--HHHHHHHHHHHHHHHHHHHHHhCCCCcCCchhhhhhhhhhHHHHHHHHHHHH
Confidence 0 000 000011 2234455555555555555544321 222 12255567889999999999
Q ss_pred HHhcc-cCCCeeeeeccccCCCCCCCCc--------cC----CchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-
Q 010128 307 YLTKA-DKHGVKIVKHIKGGLNPSSAHQ--------LQ----LTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGY- 372 (517)
Q Consensus 307 ~~~~~-~~~~~~~vg~ip~glp~~~~p~--------~~----~~~~~~~~~~~~~~~i~iv~~~~~~~~~~~~~~~~~~- 372 (517)
|.++. +... -.+|+++.+ .-|. +. +.+.....++..++.+++.-|+|+-.++....++.+.
T Consensus 612 ~~~~~v~~~k----l~Vp~~f~p-t~p~~R~W~i~p~~~~~~~p~w~~~~A~iPAlll~ILiFmD~nIts~iv~~~e~kL 686 (900)
T TIGR00834 612 IFIGDTYTQK----LSVPSGLKV-TNPSARGWFIPPLGENRPFPWWMMFAAALPALLVFILIFMEQQITTLIVSKKERKL 686 (900)
T ss_pred HHhccCcccc----cCCCCCcCC-CCCCCCCeEEccccccccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcCccccC
Confidence 97651 1111 134555542 1121 11 1222345667788899999999997777665544321
Q ss_pred --cCCCchHHHHHhHHHHHhhhccCccCcccchhhHHHHhhC-----------------C-CcchHHHHHHHHHHHHHHH
Q 010128 373 --HLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAG-----------------C-QTVVSNIVMAITVLLSLEL 432 (517)
Q Consensus 373 --~~d~nqEL~a~GiaNi~~~lfg~~p~~~s~srS~v~~~~G-----------------~-~T~ls~iv~a~~~ll~l~~ 432 (517)
..-.+-.+.-+|+.|.++|+||--+.+++..||..+.++= + .+|+++++.++++.+.+ +
T Consensus 687 kKgsgyH~Dllllg~~~~v~sllGLPw~~aatv~S~~Hv~sL~v~~~~~~~Ge~~~i~~V~EQRvT~ll~~lLiglsv-~ 765 (900)
T TIGR00834 687 KKGSGFHLDLLLVVGMGGVAALFGLPWLSAATVRSVTHANALTVMSKASAPGEKAQIQEVREQRVTGLLVAVLVGLSI-L 765 (900)
T ss_pred CCCcccchHHHHHHHHHHHHHhcCCCcccccCCcChhhHhHHeeeeeccCCCCCCccceeEeeehHHHHHHHHHHHHH-H
Confidence 1224779999999999999999988999988887665531 1 47999999998776654 6
Q ss_pred hhHHHHhhhHHHHHHHHHHHhhccCC
Q 010128 433 FTSLLYYTPIAILASIILSALPGLID 458 (517)
Q Consensus 433 l~~l~~~iP~~vLaaili~~~~~li~ 458 (517)
..|++.+||++||.|+.++.|+.-+.
T Consensus 766 ~~PvL~~IP~aVL~GvFlYMGv~SL~ 791 (900)
T TIGR00834 766 MEPILKRIPLAVLFGIFLYMGVTSLS 791 (900)
T ss_pred HHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 88999999999999999999987554
No 16
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=99.62 E-value=1.4e-12 Score=134.39 Aligned_cols=340 Identities=15% Similarity=0.149 Sum_probs=203.8
Q ss_pred hhHHHHHHHHHHHHHHH--HHH--HHhhCCCcc---hh----hHHhhhhhHHHHhccCCCccccchhHHHHHHHHHHHHh
Q 010128 98 SDLMAGLTLASLSIPQS--IGY--ANLAKLDPQ---YG----LYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQN 166 (517)
Q Consensus 98 ~Di~aGltv~~~~iPq~--iay--a~laglpp~---~g----L~s~~i~~liyalfGss~~~~~Gp~a~~sl~~~~~v~~ 166 (517)
.-+.+|+...++..--. +=+ +.-.|+++. .. ..++.+.+++.++.= +.+++.+....-+.++.....+
T Consensus 22 s~~~aG~va~lvg~~~~~~iv~~a~~~~g~s~aq~~swl~a~~~~~Gl~ti~lS~~~-r~Pi~~awStPGaAll~~~~~~ 100 (395)
T TIGR00843 22 PTLIAGFLAVLIGYAGPAAIFFQAAIKAGASTAMIIGWITAIGIAAAVSGIFLSIRF-KTPVLTAWSAPGAALLVTGFPG 100 (395)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCeeeecCchHHHHHHHhcCC
Confidence 44667777665432111 111 223566665 12 234555666666655 5678888876666666544333
Q ss_pred hcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHhhccHhHHHHHHHHHHHHHHHHhhhhhhCccccCCCccHHH
Q 010128 167 VQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFR-LGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVS 245 (517)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~l~Gv~~~llg~lr-lg~l~~fip~pVi~Gf~~gigi~I~~~ql~~~~G~~~~~~~~~~~~ 245 (517)
.. +..+..+-+++|++.+++|+.+ ++|++|++|+++..|.++|+.+.....-++.+.
T Consensus 101 ~~---------~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amLAGIlL~f~l~~~~a~~------------- 158 (395)
T TIGR00843 101 IS---------LNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAMLAGILFQFGLGAFAALD------------- 158 (395)
T ss_pred CC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 32 5677889999999999999998 599999999999999999998876444332111
Q ss_pred HHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHhhhccccccccCcchhHHHHHHHHHHHHHhcccCCCeeeeeccccC
Q 010128 246 VLGSVFSSLHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKHIKGG 325 (517)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~~~~~~Li~ii~~t~i~~~~~~~~~~~~~vg~ip~g 325 (517)
+ ++ .++...++..++.|++. |+ ++.++++++++++++..+..+. . +....
T Consensus 159 ----------~---~p---ll~~~mll~~l~~~r~~---Pr------~avl~aLlvG~iva~~~G~~~~--~---~~~~~ 208 (395)
T TIGR00843 159 ----------G---LF---LICFSMLLCWLASKAFA---PR------YAMIAALICGIAFSFALGDMNP--T---DLDFK 208 (395)
T ss_pred ----------H---hH---HHHHHHHHHHHHHHHhc---ch------HHHHHHHHHHHHHHHHhcCCCc--c---ccccc
Confidence 0 11 12333333333333322 22 3778999999999988764221 1 11112
Q ss_pred CCC--CCCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcCCCchHHHHHhHHHHHhhhccCcc------
Q 010128 326 LNP--SSAHQLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSCYV------ 397 (517)
Q Consensus 326 lp~--~~~p~~~~~~~~~~~~~~~~~~i~iv~~~~~~~~~~~~~~~~~~~~d~nqEL~a~GiaNi~~~lfg~~p------ 397 (517)
++. +..|++++. ..+..++...++.+.....-+-+..+.+||+.+.|+-+.+.|++|++++.||+++
T Consensus 209 l~~p~~~~P~fs~~-----a~~~l~lPl~~vtm~~qnlpgiavl~aaGy~~p~~~~~~~tGl~sll~ApfGg~~~nlaai 283 (395)
T TIGR00843 209 IALPQFIAPDFSFA-----HSLNLALPLFLVSLAGQFAPGIAALKAAGYNAPAKPIIAAAGLAALFAAFAGGISIGIAAI 283 (395)
T ss_pred cccceeeCCCCCHH-----HHHHHHHHHHHHHHHhcCchHHHHHHHcCCCCCchHHHHHHHHHHHHHhccCCchhhhhHH
Confidence 322 334554332 2233333333333333222222334578898899999999999999999999999
Q ss_pred CcccchhhHHHHhhCCCcchHHHHHHHHHHHHHHH---hhHHHHhhhHHHHHHHHHHHhhccCCHHHHHHHhcCChhhHH
Q 010128 398 ATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLEL---FTSLLYYTPIAILASIILSALPGLIDINEAINIYKVDKLDFL 474 (517)
Q Consensus 398 ~~~s~srS~v~~~~G~~T~ls~iv~a~~~ll~l~~---l~~l~~~iP~~vLaaili~~~~~li~~~~~~~l~k~~~~d~~ 474 (517)
+++-+..-..+.+ ++|+-.+++.+|++.++..++ +..++..+|+...+++-=.+.++.+. ..+..-.+ +..+-.
T Consensus 284 taAic~G~~ah~d-~~rR~~a~i~~Gv~yll~glfag~i~~l~~~~P~~li~~laGlAll~~~~-~~l~~a~~-~~~~r~ 360 (395)
T TIGR00843 284 TAAICMGKDAHED-KDKRWIAAAAAGIFYLLAGLFAGAITALFAALPKELIAALAGLALLGAIA-GNIKIALH-EDQERD 360 (395)
T ss_pred hHHHhcCcccccC-cCccchHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-HHHHHHhc-CcchhH
Confidence 2222222233333 789999999999999998877 55688999999887664333344332 22333332 222334
Q ss_pred HHHHHHHHHH----HHh---HHHHHHHHHHH
Q 010128 475 ACIGAFLGVL----FAS---VEIGLLAAVIF 498 (517)
Q Consensus 475 i~~~~~~~~~----~~~---~~~Gi~~Gv~~ 498 (517)
-.++||+.|. ++| -.+|+.+|+..
T Consensus 361 ~a~~tflvtaSg~~~~gigaafWgl~~G~~~ 391 (395)
T TIGR00843 361 AALIAFLATASGLHFLGIGSAFWGLCAGGLA 391 (395)
T ss_pred HHHHHHHHHHhcCCcccccHHHHHHHHHHHH
Confidence 4556666554 233 34577777544
No 17
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=99.57 E-value=1.4e-11 Score=134.33 Aligned_cols=324 Identities=13% Similarity=0.123 Sum_probs=222.6
Q ss_pred hhhHHhhhhhHHHHhccCCCccccchhHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhh
Q 010128 127 YGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRLGFLVDF 206 (517)
Q Consensus 127 ~gL~s~~i~~liyalfGss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~Gv~~~llg~lrlg~l~~f 206 (517)
=.|.++.+.+++|++||+.|-.++|+++.+.++-..+..=-. +++..|+...+...+.+.++.+++..+....+++|
T Consensus 396 E~L~stal~GiifslfggQPLlIlg~TgP~lVfe~~lf~f~~---~~~~dyl~~r~wVglW~~~l~illaa~~as~lv~~ 472 (876)
T KOG1172|consen 396 ETLLSTALCGIIFSLFGGQPLLILGVTGPLLVFEKALFKFCK---DNGLDYLAFRAWVGLWTAFLLILLAATNASSLVKY 472 (876)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHHHHh---hCCCchhhHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 458999999999999999999999999998887665543221 22356788889999999999999999999999999
Q ss_pred ccHhHHHHHHHHHHHHHHHHhhhhhhCccccCCCc-c--H---HHHHHHHHhcc----cccCcchHHHHH----HHHHHH
Q 010128 207 LSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKT-D--V---VSVLGSVFSSL----HHSYWYPLNFVL----GCSFLI 272 (517)
Q Consensus 207 ip~pVi~Gf~~gigi~I~~~ql~~~~G~~~~~~~~-~--~---~~~~~~~~~~~----~~~~~~~~~~~i----g~~~l~ 272 (517)
+.+..-..|-.=|++..+...++.+.++....... + . ......-..+. ....+.+.+..+ .+.++.
T Consensus 473 ~TRfteEiF~~LIs~iFi~eai~kl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~llslil~~gt~~ 552 (876)
T KOG1172|consen 473 ITRFTEEIFGLLISLIFIYEAIKKLIKIFKGLPIEFDSKPNPGADWSGPECESVSGTLLGSSCRPDTALLSLILMFGTLF 552 (876)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccCCcccccccccccccCcccCCCcCCcchHHHHHHHHHHHHH
Confidence 99999999999999999999999777664211000 0 0 00000000000 000122333333 333333
Q ss_pred HHHHHHHhhh--cccc--ccccCcchhHHHHHHHHHHHHHhcc-cCCCeeeeeccccCCCCCC--------CCccCCchh
Q 010128 273 FLLIARFIGR--RNKK--LFWLPAIAPLLSVILSTLIVYLTKA-DKHGVKIVKHIKGGLNPSS--------AHQLQLTGP 339 (517)
Q Consensus 273 ~ll~~~~~~~--~~~~--~~~~~~~~~Li~ii~~t~i~~~~~~-~~~~~~~vg~ip~glp~~~--------~p~~~~~~~ 339 (517)
+-+.+|++++ .+++ +.++...+..++|++.+.+.|..+. ...++. .|.++|++. .|..+..+.
T Consensus 553 ~a~~lr~fr~s~yf~~~~R~~isDfgvpisIl~~s~i~~~~~~~~~~kl~----vp~~~~~t~~~~rgw~v~~~~~~P~~ 628 (876)
T KOG1172|consen 553 LALTLRKFKSSRYFPRKVRSLISDFGVPLSILVFSLIDYFGGSVETPKLP----VPSVFPPTWPFDRGWFVPPFGKNPWW 628 (876)
T ss_pred HHHHHHHhccCCccchHHHHHHHhhhhHHHHHHHHHHHhhccccCCCccc----cCcCCCCCCcccCCeeeCCCCCCCHH
Confidence 3333443321 1111 1235556778899999999998752 323322 233333321 111123344
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC---cCCCchHHHHHhHHHHHhhhccCccCcccchhhHHHHhhC----
Q 010128 340 HLGQTAKIGLISAVVALTEAIAVGRSFASIKGY---HLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAG---- 412 (517)
Q Consensus 340 ~~~~~~~~~~~i~iv~~~~~~~~~~~~~~~~~~---~~d~nqEL~a~GiaNi~~~lfg~~p~~~s~srS~v~~~~G---- 412 (517)
.+..++..++.+++.-|+|+-.++....++.+. ..-.+-+|.-+|+.|.++|+||--+.++...+|-...++=
T Consensus 629 ~~~~A~ipalll~iLiFmDqqIts~iv~rke~kLKKgsgyH~DLlllgil~~icsllGLPw~~~a~p~S~~H~~SL~v~~ 708 (876)
T KOG1172|consen 629 YVFAALIPALLLTILIFMDQQITAVIVNRKENKLKKGSGYHLDLLLLGILTLICSLLGLPWSNAATVQSPMHTKSLAVES 708 (876)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHhhcccccCCCCcchhHHHHHHHHHHHHHHhcCCCccccccccCHHHHHHHHHhh
Confidence 566777888999999999998777766554332 2233568999999999999999999999999987776632
Q ss_pred -------------C-CcchHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHhhccCC
Q 010128 413 -------------C-QTVVSNIVMAITVLLSLELFTSLLYYTPIAILASIILSALPGLID 458 (517)
Q Consensus 413 -------------~-~T~ls~iv~a~~~ll~l~~l~~l~~~iP~~vLaaili~~~~~li~ 458 (517)
+ ..|++|++.++++.+ ..++.|++..||++||-|+-.+.|+.-+.
T Consensus 709 ~~~apge~~~i~~V~EQRvtgll~~llvgl-s~~~~pvL~~IP~~VL~GvFlYMgv~SL~ 767 (876)
T KOG1172|consen 709 ETSAPGEQPQIVGVREQRVTGLLQFLLVGL-SVLLLPVLKLIPMPVLYGVFLYMGVSSLP 767 (876)
T ss_pred cccCCCCccccccchhhhhHHHHHHHHHHH-HHHHHHHHhhccHHHHHHHHHHHhhccCC
Confidence 2 368999999999984 44789999999999999999999987654
No 18
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=99.36 E-value=2.9e-09 Score=108.11 Aligned_cols=274 Identities=17% Similarity=0.188 Sum_probs=175.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-hhhHHhhccHhHHHHHHHHHHHHHHHHhhhhhhCccccCCCccHHHHHHHHHhcccc
Q 010128 178 RKLVFTVTFFAGVFQSVFGLFR-LGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHH 256 (517)
Q Consensus 178 ~~~~~~~~~l~Gv~~~llg~lr-lg~l~~fip~pVi~Gf~~gigi~I~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 256 (517)
+..+.++-+++|++.++.|+.+ ++|+++.+|.++..+.++|+-+-....-++. +.+
T Consensus 87 ~~eavGAfl~~~~Li~l~G~tg~~~rl~~~IP~~ia~AMLAGvLl~f~l~~f~a-----------------------~~~ 143 (378)
T PF03594_consen 87 FAEAVGAFLVAGALILLLGVTGLFGRLMRRIPPPIASAMLAGVLLPFGLAAFTA-----------------------LQA 143 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH-----------------------HHh
Confidence 5667888899999999999998 5999999999999999999987765443331 111
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHhhhccccccccCcchhHHHHHHHHHHHHHhcccCCCeeeeeccccCCCCCCCCccCC
Q 010128 257 SYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKHIKGGLNPSSAHQLQL 336 (517)
Q Consensus 257 ~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~~~~~~Li~ii~~t~i~~~~~~~~~~~~~vg~ip~glp~~~~p~~~~ 336 (517)
++ .+....++..++.|++.+|+ +.+.+++++..+++..+.-. . .+.+..++.|.+-.++|
T Consensus 144 ---~P---~l~~~ml~~~l~~~r~~pr~---------av~~al~~g~~~a~~~g~~~--~---~~~~~~~~~p~~~~P~F 203 (378)
T PF03594_consen 144 ---DP---LLVGPMLAVFLLARRFSPRY---------AVLAALVAGVAVAALTGQLH--P---SALQLSLAHPVFTTPEF 203 (378)
T ss_pred ---HH---HHHHHHHHHHHHHHHHcchh---------HHHHHHHHHHHHHHhcCCCC--c---cccccccceeEEECCcc
Confidence 11 12233344444556555555 45667778888777654311 1 11122344444333344
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcCCCchHHHHHhHHHHHhhhccCccCcccchhhHHHHh--hC--
Q 010128 337 TGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFS--AG-- 412 (517)
Q Consensus 337 ~~~~~~~~~~~~~~i~iv~~~~~~~~~~~~~~~~~~~~d~nqEL~a~GiaNi~~~lfg~~p~~~s~srS~v~~~--~G-- 412 (517)
+. ..++.+++.+.++.+.....-+-++-+.+||+.+.|+-+..-|++|++.+.|||++.+-+---.++... ++
T Consensus 204 s~---~a~v~lalPL~ivtmasQnlpG~aVL~a~GY~~p~~~~~~~tGl~s~l~ApfGg~~~nlAaitaAIc~g~eah~d 280 (378)
T PF03594_consen 204 SW---SALVSLALPLFIVTMASQNLPGIAVLRAAGYQPPVNPLITVTGLASLLAAPFGGHAVNLAAITAAICAGPEAHPD 280 (378)
T ss_pred cH---HHHHHHHHHHHHHHHHhcchHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHcCCccCCC
Confidence 43 334555566666666655555555567899999999999999999999999999997755544554443 23
Q ss_pred -CCcchHHHHHHHHHHHHHHH---hhHHHHhhhHHHHHHHHHHHhhccCCHHHHHHHhcCChhhHHHHHHHHHHHH----
Q 010128 413 -CQTVVSNIVMAITVLLSLEL---FTSLLYYTPIAILASIILSALPGLIDINEAINIYKVDKLDFLACIGAFLGVL---- 484 (517)
Q Consensus 413 -~~T~ls~iv~a~~~ll~l~~---l~~l~~~iP~~vLaaili~~~~~li~~~~~~~l~k~~~~d~~i~~~~~~~~~---- 484 (517)
.|--.+++.+|+..++..++ +..++...|.+..+.+-=.+.++.+ -+.++.-++.++ +-.-.++||+.|.
T Consensus 281 p~rRy~Aav~~Gv~yll~Gl~a~~~v~l~~~lP~~li~~lAGLALlg~l-~~sl~~A~~~~~-~r~aAlvtFlvtaSGis 358 (378)
T PF03594_consen 281 PSRRYIAAVAAGVFYLLFGLFAAALVALFAALPPALIAALAGLALLGTL-GGSLQTAFSDEK-YREAALVTFLVTASGIS 358 (378)
T ss_pred cccchHHHHHHhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HHHHHHHhcCcc-hhHHHHHHHHHHHcCCC
Confidence 34557888999988888877 5567888999887665333333333 133445454332 2234555666554
Q ss_pred HHh---HHHHHHHHHHHH
Q 010128 485 FAS---VEIGLLAAVIFL 499 (517)
Q Consensus 485 ~~~---~~~Gi~~Gv~~s 499 (517)
++| -.+|+.+|+...
T Consensus 359 l~gIgaafWgLv~G~~~~ 376 (378)
T PF03594_consen 359 LLGIGAAFWGLVAGLLVH 376 (378)
T ss_pred cccccHHHHHHHHHHHHH
Confidence 232 346777776654
No 19
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=99.27 E-value=4.9e-10 Score=115.52 Aligned_cols=336 Identities=13% Similarity=0.114 Sum_probs=200.5
Q ss_pred chhhhhHHHHhhcccccccccccCChhhhHhhHHHHHHHHHHHHHHHHHHHHhhCCCc------chhhHHhhhhhHHHHh
Q 010128 68 QTWRRSAFSFLRGLFPILNWGRNYKASKFKSDLMAGLTLASLSIPQSIGYANLAKLDP------QYGLYTSVIPPLIYAL 141 (517)
Q Consensus 68 ~~~~~~~~~~l~~~~p~~~wl~~y~~~~l~~Di~aGltv~~~~iPq~iaya~laglpp------~~gL~s~~i~~liyal 141 (517)
|++.......+|||+.++ -+.+.+|.-++=++=+|-.. +.-++++.+.+++.+.
T Consensus 9 P~w~~~i~lgfQhyl~~l--------------------g~~v~iP~~lv~~m~~g~~~~~~~lIsT~~f~sGI~TllQt~ 68 (510)
T KOG1292|consen 9 PPWPEIILLGFQHYLVCL--------------------GTTVLIPFLLVPLMCGGDEEKAVQLISTIFFVSGITTLLQTT 68 (510)
T ss_pred CCchHHHHhccchHHHHh--------------------hhhhhhhhhhcccccCChHHHHHHHHHHHhhhccHHHHHHHH
Confidence 444444677889999887 56788888776544222111 1457889999999999
Q ss_pred ccCCCccccch-hHHHHHHHHHHHH-hhcCCCC----ChHHH---HHHHHHHHHHHHHHHHHHHhhhh-hhHHhhccHhH
Q 010128 142 MGSSREIAIGP-VAVVSMLLSALMQ-NVQDPAA----DPVAY---RKLVFTVTFFAGVFQSVFGLFRL-GFLVDFLSHAA 211 (517)
Q Consensus 142 fGss~~~~~Gp-~a~~sl~~~~~v~-~~~~~~~----~~~~~---~~~~~~~~~l~Gv~~~llg~lrl-g~l~~fip~pV 211 (517)
||++.++..|| ++-+....+..-. +....++ +.+.+ ++.+-++.++++++|.++|+.++ |++.||+.+-.
T Consensus 69 fG~RLp~v~G~Sfafl~p~~~i~~~~~~~~~~~~~~~~~~~~~~~mr~iqGAlivas~vqiilG~sGl~g~l~rfi~Plt 148 (510)
T KOG1292|consen 69 FGTRLPLVQGPSFAFLPPALAIISLPRFTCITTPHETDTERFQHRMREIQGALIVASLVQIILGFSGLWGNLLRFIGPLT 148 (510)
T ss_pred hhcccccccccceehhhHHHHHHhccccCCCCCcccchhHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHhhcCChh
Confidence 99999999999 4444433332221 2222111 11122 45667889999999999999997 88999999998
Q ss_pred HHHHHHHHHHHHHHHhhhhhhCccccCCCccHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHH---hhhccc---
Q 010128 212 IVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHHSYWYPLNFVLGCSFLIFLLIARF---IGRRNK--- 285 (517)
Q Consensus 212 i~Gf~~gigi~I~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~l~~ll~~~~---~~~~~~--- 285 (517)
+.=.++-+|+.+.....+. +.+ +| -+|+..+.++++... +.++..
T Consensus 149 i~P~v~lvgl~l~~~~~~~-----------------------~~~---~w---eI~l~~~llli~fsqy~~~~~~~~~~~ 199 (510)
T KOG1292|consen 149 IVPLVALVGLGLFQDGFPK-----------------------LGK---HW---EISLPEILLLILFSQYASLPKKGFGSR 199 (510)
T ss_pred hhhHHHHHhhhhHHhhhhh-----------------------hhh---he---eecHHHHHHHHHHHHhhhccccccccc
Confidence 8888887776553332221 111 11 123333333322222 211111
Q ss_pred cccccCcchhHHHHHHHHHHHHHhc---ccCC-----------Cee-eeecccc-CCCC-CCCCccCCchhhHHHHHHHH
Q 010128 286 KLFWLPAIAPLLSVILSTLIVYLTK---ADKH-----------GVK-IVKHIKG-GLNP-SSAHQLQLTGPHLGQTAKIG 348 (517)
Q Consensus 286 ~~~~~~~~~~Li~ii~~t~i~~~~~---~~~~-----------~~~-~vg~ip~-glp~-~~~p~~~~~~~~~~~~~~~~ 348 (517)
+...+.-.+.++++.+.=+.++++- ...+ |-+ +...-|. ..|. .++..+.|+......++.
T Consensus 200 ~~~if~~f~vll~i~ivW~~~~iLT~tgay~~~~~~t~~~~RTD~~~vi~~apWi~vPyP~QwG~P~f~~~~~f~m~a-- 277 (510)
T KOG1292|consen 200 RIQIFSRFPVLLAIAIVWLYCFILTITGAYPYKPTTTQSSCRTDRNGVISSAPWIRVPYPFQWGPPTFSAGLVFAMMA-- 277 (510)
T ss_pred ccchHhhccHHHHHHHHHHHHHHHHhccccCCCccccCCcccccHhhhhccCCceeecCCCccCCCcccHHHHHHHHH--
Confidence 1111111233455555545555441 1111 000 1122221 1222 222233344444444444
Q ss_pred HHHHHHHHHHHH----HHHHHhhhhcCCcCCCchHHHHHhHHHHHhhhccCccCcccch-hhHHHHhhCCCcchHHHHHH
Q 010128 349 LISAVVALTEAI----AVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSCYVATGSFS-RTAVNFSAGCQTVVSNIVMA 423 (517)
Q Consensus 349 ~~i~iv~~~~~~----~~~~~~~~~~~~~~d~nqEL~a~GiaNi~~~lfg~~p~~~s~s-rS~v~~~~G~~T~ls~iv~a 423 (517)
.++++.+|++ +.+|....+.--+...||....+|++.+++|+||.-.+++.++ |.++-.-+...||.+--++|
T Consensus 278 --a~~va~iES~G~y~a~ar~~~a~ppP~~~inRgi~~eGig~lL~gl~G~gtG~Tt~~ENigll~vTKVgSRrvvQ~aa 355 (510)
T KOG1292|consen 278 --ASLVAMIESTGDYIACARLSSATPPPPSVLNRGIGWEGIGSLLAGLFGTGTGSTTSVENIGLLGVTKVGSRRVVQIAA 355 (510)
T ss_pred --HHHHHHHHhcchHHHHHHHhcCCCCChhhhhhhhhhhhHHHHHHHhhCCCccceeeccceeeEeeeeeeeeeehhhhH
Confidence 4555566665 4444444444445567999999999999999999766555554 46666667788899989999
Q ss_pred HHHHHHHHH--hhHHHHhhhHHHHHHHHHHHhhccC
Q 010128 424 ITVLLSLEL--FTSLLYYTPIAILASIILSALPGLI 457 (517)
Q Consensus 424 ~~~ll~l~~--l~~l~~~iP~~vLaaili~~~~~li 457 (517)
.++++.-.+ ++.+++.||.++.||+.-. +++|+
T Consensus 356 ~fmI~~~i~gKFgA~fAsIP~piv~~l~c~-~~~mv 390 (510)
T KOG1292|consen 356 GFMIFFGIFGKFGAFFASIPDPIVGGLLCI-LFGMV 390 (510)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHH-HHHHH
Confidence 988887776 8999999999999998643 44444
No 20
>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains. This domain is found at the C terminus of many bicarbonate transport proteins. It is also found in some plant proteins responsible for boron transport []. In these proteins it covers almost the entire length of the sequence.; GO: 0006820 anion transport, 0016021 integral to membrane; PDB: 1BH7_A 1BTT_A 1BZK_A 1BTQ_A 1BTR_A 1BNX_A 1BTS_A.
Probab=99.14 E-value=1.2e-11 Score=131.42 Aligned_cols=348 Identities=14% Similarity=0.192 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhhC------CCcchhhHHhhhhhHHHHhccCCCccccchhHHHHHHHHHHHHhhcCCCCChHHHH
Q 010128 105 TLASLSIPQSIGYANLAK------LDPQYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQNVQDPAADPVAYR 178 (517)
Q Consensus 105 tv~~~~iPq~iaya~lag------lpp~~gL~s~~i~~liyalfGss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~~~~ 178 (517)
-.-...+.-+++|+.+-+ +...-.+.++.+.+++|++||+.|-.+.|+++.+.+......+--. +...+|+
T Consensus 41 flyfa~l~PaItFG~ll~~~T~~~~gv~e~l~~~~i~Gi~f~lf~gQPL~Ilg~TgP~~vf~~~l~~~~~---~~~~~fl 117 (510)
T PF00955_consen 41 FLYFACLSPAITFGGLLGEATDGAIGVMEVLLSTAICGIIFSLFSGQPLTILGSTGPVLVFEKILYKFCK---SYGLDFL 117 (510)
T ss_dssp HHHHHHHHHHHSSS-SS---------HHHHHHHHHHHHHHHHHCC-----------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---ccccccc
Confidence 344566667777776532 3334558899999999999999999999999998877654432211 1123567
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHhhccHhHHHHHHHHHHHHHHHHhhhhhhCccccCC-CccH--------------
Q 010128 179 KLVFTVTFFAGVFQSVFGLFRLGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTN-KTDV-------------- 243 (517)
Q Consensus 179 ~~~~~~~~l~Gv~~~llg~lrlg~l~~fip~pVi~Gf~~gigi~I~~~ql~~~~G~~~~~~-~~~~-------------- 243 (517)
+.-....+.++++.+++..+...++++|+.+-.-..|-.=+++..+...++.+..+..... ..+.
T Consensus 118 ~~~~wig~w~~~~~~~~~~~~~s~lv~~~TRfTeEiF~~lIs~iFi~ea~~~l~~~~~~~p~~~~~~~~~~c~c~~~~~~ 197 (510)
T PF00955_consen 118 PFRAWIGIWTAIFLLVLAAFNASFLVRYITRFTEEIFALLISIIFIYEAIKKLVKIFKKYPLNSDYVTQYSCQCTPPENS 197 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7778899999999999999999999999999999999999999999999888765421000 0000
Q ss_pred -----------H-------HHHHHHHhcccc----------cCcch----HHHHHHHHHHHHHHHHHHhhh--cccc--c
Q 010128 244 -----------V-------SVLGSVFSSLHH----------SYWYP----LNFVLGCSFLIFLLIARFIGR--RNKK--L 287 (517)
Q Consensus 244 -----------~-------~~~~~~~~~~~~----------~~~~~----~~~~ig~~~l~~ll~~~~~~~--~~~~--~ 287 (517)
. ....+-..+.+. ....+ .++++.+.++.+-..++.+++ .+++ +
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~g~~~g~~c~~~~~~~p~taLlSliL~lgTf~la~~L~~fk~S~yf~~~vR 277 (510)
T PF00955_consen 198 NNSTLNPWTNLNNGSINWSNLSNSECENINGELVGTSCDDHVQYQPDTALLSLILALGTFWLAYTLRQFKNSPYFPRWVR 277 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCcCccHHHH
Confidence 0 000000000000 00122 223333334433333333221 1222 1
Q ss_pred cccCcchhHHHHHHHHHHHHHhcccCCCeeeeeccccCCCCCC-------CCcc-CCchhhHHHHHHHHHHHHHHHHHHH
Q 010128 288 FWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKHIKGGLNPSS-------AHQL-QLTGPHLGQTAKIGLISAVVALTEA 359 (517)
Q Consensus 288 ~~~~~~~~Li~ii~~t~i~~~~~~~~~~~~~vg~ip~glp~~~-------~p~~-~~~~~~~~~~~~~~~~i~iv~~~~~ 359 (517)
..+...+..+++++.+.+.+.++.+.... ++|.++.+-. ++.+ +..+.....++..++.+++.-++|+
T Consensus 278 ~~isDf~v~iaI~~~~~~~~~~~~~~~kL----~vp~~f~pt~~~~r~W~v~p~~~~p~w~~~aA~~palll~iL~F~Dq 353 (510)
T PF00955_consen 278 EIISDFGVPIAILIMTLVDYLFGVDTPKL----NVPSSFKPTSPGKRGWFVNPFGSLPWWAIFAAIIPALLLTILFFMDQ 353 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHhhHHHHHHHHHHHHHHHhccccccc----CCCCCCCCCCCCCCCeecCcccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 23555677889999999888765322221 2444433211 1111 1111123344555777888889988
Q ss_pred HHHHHHhhhhcCC---cCCCchHHHHHhHHHHHhhhccCccCcccchhhHHHHhhCC------------------CcchH
Q 010128 360 IAVGRSFASIKGY---HLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGC------------------QTVVS 418 (517)
Q Consensus 360 ~~~~~~~~~~~~~---~~d~nqEL~a~GiaNi~~~lfg~~p~~~s~srS~v~~~~G~------------------~T~ls 418 (517)
-..+....++.+. ..-.+-+|.-+|+.|.++|++|--+.+++..||..+.++=. .+|++
T Consensus 354 nIts~ivn~~e~kLkKg~gyH~DL~llgi~~~v~sllGLPw~~aa~~~S~~Hv~sL~~~~~~~~pGe~~~i~~V~EqRvT 433 (510)
T PF00955_consen 354 NITSLIVNRPENKLKKGSGYHLDLFLLGIITLVCSLLGLPWMNAATPQSPMHVRSLAVESETSAPGEKPKIVGVREQRVT 433 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHhHHHhCChhhccCCCCcccHHHHHHHHHHHHHHHcCCCCcccCccCCHHHhCcccEEeccccCCCCCeeCeEEEeccc
Confidence 6665554433221 12235688999999999999998888888888776655322 57899
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHhhccCCHH
Q 010128 419 NIVMAITVLLSLELFTSLLYYTPIAILASIILSALPGLIDIN 460 (517)
Q Consensus 419 ~iv~a~~~ll~l~~l~~l~~~iP~~vLaaili~~~~~li~~~ 460 (517)
+++.++++.+.+ ++.|++++||++||.|+.++.|+.-++-.
T Consensus 434 ~l~~~~Ligls~-~l~pvL~~IP~~VL~GvFlymG~~sL~gn 474 (510)
T PF00955_consen 434 GLLVHLLIGLSL-FLLPVLKLIPMPVLYGVFLYMGVTSLSGN 474 (510)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHhheeeeecCc
Confidence 999998776665 67899999999999999999988766443
No 21
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.84 E-value=2.3e-06 Score=85.50 Aligned_cols=271 Identities=19% Similarity=0.219 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-hhhHHhhccHhHHHHHHHHHHHHHHHHhhhhhhCccccCCCccHHHHHHHHHhcccc
Q 010128 178 RKLVFTVTFFAGVFQSVFGLFR-LGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHH 256 (517)
Q Consensus 178 ~~~~~~~~~l~Gv~~~llg~lr-lg~l~~fip~pVi~Gf~~gigi~I~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 256 (517)
...+.++-+.+|+..++.|++| ++|+++-+|+++-.+..+|+=+-+....++.+ +
T Consensus 102 ~~eaVGAfiVt~~li~l~G~~~~l~rl~~~IP~sla~AmlAGILL~F~l~a~~a~-----------------------~- 157 (402)
T COG3135 102 FAEAVGAFIVTGALIILCGLTGPLTRLMRIIPPSLAAAMLAGILLRFGLKAFKAL-----------------------P- 157 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcc-----------------------C-
Confidence 4567788899999999999998 69999999999999999999877655544421 1
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHhhhccccccccCcchhHHHHHHHHHHHHHhcccCCCeeeeeccccCCCCCCCCccCC
Q 010128 257 SYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKHIKGGLNPSSAHQLQL 336 (517)
Q Consensus 257 ~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~~~~~~Li~ii~~t~i~~~~~~~~~~~~~vg~ip~glp~~~~p~~~~ 336 (517)
.++. +....+...++.|.+.+|+ +...+++++..++...+.-.. .....++ ..|.+..|+ |
T Consensus 158 --~~p~---l~lpmv~~~ll~r~f~pr~---------aV~aalvvgv~va~~~G~~~~-~~~~~~~--~~p~~v~P~--F 218 (402)
T COG3135 158 --TQPL---LVLPMVLAYLLARVFAPRY---------AVIAALVVGVLVAALLGDLHT-ALVALEI--STPTWVTPE--F 218 (402)
T ss_pred --CChH---HHHHHHHHHHHHHHcCchH---------HHHHHHHHHHHHHHHhCcccc-ccccccc--CcceeeCCc--c
Confidence 1111 2222233344556666665 567788888888877653111 0001111 112233343 3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcCCCchHHHHHhHHHHHhhhccCccCcccchhhHHHHhhC----
Q 010128 337 TGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAG---- 412 (517)
Q Consensus 337 ~~~~~~~~~~~~~~i~iv~~~~~~~~~~~~~~~~~~~~d~nqEL~a~GiaNi~~~lfg~~p~~~s~srS~v~~~~G---- 412 (517)
+. ..++.+++.+.++.+...-.-+-++=+.+||+.+++--+.+-|+..+.++.||++..+-..- |+ +.=+|
T Consensus 219 s~---~A~l~lalPL~lvtmasQN~pGiAvLka~gY~pp~~pl~~~TGl~sll~ApfG~~t~nLaAI-tA-Aic~gpdaH 293 (402)
T COG3135 219 SF---AAMLSLALPLFLVTMASQNLPGIAVLKAAGYQPPPSPLIVATGLASLLSAPFGGHTVNLAAI-TA-AICTGPDAH 293 (402)
T ss_pred cH---HHHHHHhHHHHHHHHHhccCccceeehhcCCCCCCchHHHHhHHHHHHhcccccceecHHHH-HH-HHhcCCCCC
Confidence 33 34455555566666655433333344578999999999999999999999999998663222 22 22222
Q ss_pred ---CCcchHHHHHHHHHHHHHHHhh---HHHHhhhHHHHHHHHHHHhhccCC--HHHHHHHhcCChhhHHHHHHHHHHHH
Q 010128 413 ---CQTVVSNIVMAITVLLSLELFT---SLLYYTPIAILASIILSALPGLID--INEAINIYKVDKLDFLACIGAFLGVL 484 (517)
Q Consensus 413 ---~~T~ls~iv~a~~~ll~l~~l~---~l~~~iP~~vLaaili~~~~~li~--~~~~~~l~k~~~~d~~i~~~~~~~~~ 484 (517)
.|--.+++++|+.-+++.+|.+ .++..+|+..+..+ +|+-|+. .+.+..-.| |..|-.-..++|++|.
T Consensus 294 pD~~rry~Aa~~agi~ylv~GlF~~~~~~l~~alP~~li~~l---AGLALlg~~~~~l~~A~~-~~~~R~aAlvtF~VTa 369 (402)
T COG3135 294 PDPARRYTAALVAGIFYLLAGLFGGALVGLMAALPASLIAAL---AGLALLGTLGNSLQAALK-DEREREAALVTFLVTA 369 (402)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHH---HHHHHHHHHHHHHHHHhc-Ccccchhhhhheeehh
Confidence 3666899999999999988854 46677898766443 3333331 122333333 2222233445555443
Q ss_pred ----HHh---HHHHHHHHHHHHH
Q 010128 485 ----FAS---VEIGLLAAVIFLC 500 (517)
Q Consensus 485 ----~~~---~~~Gi~~Gv~~s~ 500 (517)
++| -.+|+..|.....
T Consensus 370 SG~tl~GIgaafWGLvaG~~~~~ 392 (402)
T COG3135 370 SGLTLFGIGAAFWGLVAGLLVLA 392 (402)
T ss_pred ccceeecccHHHHHHHHHHHHHH
Confidence 333 3456666655443
No 22
>PF11840 DUF3360: Protein of unknown function (DUF3360); InterPro: IPR021794 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 489 to 517 amino acids in length.
Probab=98.10 E-value=0.0017 Score=65.61 Aligned_cols=257 Identities=16% Similarity=0.191 Sum_probs=144.2
Q ss_pred ccchhHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhh-HHhhccHhHHHHHHHHHHHHHHHHh
Q 010128 149 AIGPVAVVSMLLSALMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRLGF-LVDFLSHAAIVGFMAGAAIVIGLQQ 227 (517)
Q Consensus 149 ~~Gp~a~~sl~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~Gv~~~llg~lrlg~-l~~fip~pVi~Gf~~gigi~I~~~q 227 (517)
..|.-+.+..++..++..-++| ..+.++.|++-++++.+|.|. +++.-++-|-+|.+-=.|+.=..+|
T Consensus 123 LAGthgPmIpLIp~ivaaGgHP-----------Lalgilvg~fGlil~~~kggS~L~~LTs~gv~ggLllylG~~G~~~q 191 (492)
T PF11840_consen 123 LAGTHGPMIPLIPLIVAAGGHP-----------LALGILVGVFGLILSIFKGGSKLVNLTSHGVCGGLLLYLGFVGLIGQ 191 (492)
T ss_pred ccCCCCCcchhhHHHHHcCCCc-----------HHHHHHHHHHHHHHHHhcchhHHHhhhcCccccceeeeehhhhHHHH
Confidence 3455556666666665554433 246889999999999999866 8999999999998888888878888
Q ss_pred hhhhhCccccCCCccHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHhhhccccccccCcchhHHHHHHHHHHHH
Q 010128 228 LKGLLGISHFTNKTDVVSVLGSVFSSLHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVY 307 (517)
Q Consensus 228 l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~~~~~~Li~ii~~t~i~~ 307 (517)
+++++.... .++ ..+..+++-.+++++...+.+++||+- +.-++-+++.++++
T Consensus 192 i~kl~~wa~----------------~~~---~~~i~fvvi~~tiv~Ya~L~k~~KrWL--------aIPl~~~~a~~~a~ 244 (492)
T PF11840_consen 192 IKKLFAWAN----------------GFD---MGYIAFVVIIVTIVLYAYLAKIEKRWL--------AIPLCSILAGVLAF 244 (492)
T ss_pred HHHHHHHHh----------------ccC---ccHHHHHHHHHHHHHHHHHHHhccchh--------hhhHHHHHHHHHHH
Confidence 887653321 111 223333333344444444445555543 22234455556666
Q ss_pred HhcccCCCeeeeeccccCCCCCCCCccCC------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------
Q 010128 308 LTKADKHGVKIVKHIKGGLNPSSAHQLQL------------TGPHLGQTAKIGLISAVVALTEAIAVGRSFASI------ 369 (517)
Q Consensus 308 ~~~~~~~~~~~vg~ip~glp~~~~p~~~~------------~~~~~~~~~~~~~~i~iv~~~~~~~~~~~~~~~------ 369 (517)
.++..- ++. -+.|+|... | ..| +.+++...+|.++.....=.-|.++. +.|.+.
T Consensus 245 ~lGa~f-~f~----t~pglp~ln-P-~YWWge~tGw~LglP~~~hfiav~PFAiLAVaMWSpDflgh-rvFqelnypk~~ 316 (492)
T PF11840_consen 245 ALGAPF-EFT----TEPGLPNLN-P-MYWWGEETGWQLGLPTLEHFIAVLPFAILAVAMWSPDFLGH-RVFQELNYPKET 316 (492)
T ss_pred HcCCCc-eee----cCCCCCCCC-C-cccccCCcccccCCCcHHHHHHhccHHHHHHHHhCchHHHH-HHHHHhcCchhh
Confidence 665421 111 122333211 0 011 11234444554432211111122221 233221
Q ss_pred cCCcCCCchHHHHHhHHHHHhhhccCccCcccchhhHHHHhhCCCc--chHHHHHHHHHHHHHHHhhHHHHhhhHHHHHH
Q 010128 370 KGYHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQT--VVSNIVMAITVLLSLELFTSLLYYTPIAILAS 447 (517)
Q Consensus 370 ~~~~~d~nqEL~a~GiaNi~~~lfg~~p~~~s~srS~v~~~~G~~T--~ls~iv~a~~~ll~l~~l~~l~~~iP~~vLaa 447 (517)
++...|.|+.+..-.+=|++|+.+||--.+.|-.--.+-..- +|- |-..+.++++++++.+..-|.=-.+=.+++..
T Consensus 317 ~kvlMnvDDTm~~~siRQ~vGs~lGGgN~~SsWgTymIPaaI-aKRPIpggAiLtg~~Ci~~av~GyPMdlavw~Pvl~v 395 (492)
T PF11840_consen 317 KKVLMNVDDTMTMCSIRQIVGSILGGGNIASSWGTYMIPAAI-AKRPIPGGAILTGLLCIVAAVWGYPMDLAVWPPVLRV 395 (492)
T ss_pred cceeecccchhHHHHHHHHHhhcccCCcccccchhhhhhHHH-hcCCCCchHHHHHHHHHHHHHhcCcchhhhcccHHHH
Confidence 234568899999999999999999997766555544443332 343 55678888888888877665322222344555
Q ss_pred HHHHH
Q 010128 448 IILSA 452 (517)
Q Consensus 448 ili~~ 452 (517)
.+++-
T Consensus 396 ALlvG 400 (492)
T PF11840_consen 396 ALLVG 400 (492)
T ss_pred HHHHH
Confidence 55543
No 23
>PRK10720 uracil transporter; Provisional
Probab=91.91 E-value=1.4 Score=47.00 Aligned_cols=61 Identities=13% Similarity=-0.005 Sum_probs=48.0
Q ss_pred HHHHHhHHHHHhhhccCccCcccchhhHHHHhhCCCcchHHHHHHHHHHHHHHHhhHHHHhhhHH
Q 010128 379 EMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLELFTSLLYYTPIA 443 (517)
Q Consensus 379 EL~a~GiaNi~~~lfg~~p~~~s~srS~v~~~~G~~T~ls~iv~a~~~ll~l~~l~~l~~~iP~~ 443 (517)
++...=.++-++++++++-++...+-++-|...+++||.++-....+-..++.+ +..+|+.
T Consensus 261 ~~~r~l~adGlatii~glfG~~p~tty~en~g~ia~T~v~sr~v~~~a~~~li~----lg~~pk~ 321 (428)
T PRK10720 261 GLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIIAIL----LSCVGKL 321 (428)
T ss_pred cccchHhhhhHHHHHHHhcCCCCccccccccceeeecccchhHHHHHHHHHHHH----HHHHHHH
Confidence 456667888999999999888888888889999999999999888766655544 4556664
No 24
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=90.83 E-value=14 Score=39.18 Aligned_cols=109 Identities=16% Similarity=0.137 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHH----HHHhhCCCc-----chhhHHhhhhhHHHHhccCCCccccchhHHHHHHHHHHHHhhcCCCCChH
Q 010128 105 TLASLSIPQSIG----YANLAKLDP-----QYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQNVQDPAADPV 175 (517)
Q Consensus 105 tv~~~~iPq~ia----ya~laglpp-----~~gL~s~~i~~liyalfGss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~ 175 (517)
+.+++..-+.++ .+...|-++ .-++.+-.+++++-++||+.+.... +..+..... .+.. .
T Consensus 226 ~~~lv~~~esig~~~a~~~~~g~~~~~~~~~~~l~~~Gi~~i~aglfG~~p~t~~---~~~~~~~~~----tg~~----s 294 (406)
T TIGR03173 226 IVYLVSMVETTGDFLALGEITGRPITEKDLAGGLRADGLGSALGGLFNTFPYTSF---SQNVGLVQL----TGVK----S 294 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCchhccchHHhccHHHHHHHHhCCCCCcch---hhhHHHHHH----hCCC----c
Confidence 444555555444 344455332 2789999999999999998774432 222111111 1100 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-hhhhHHhhccHhHHHHHHHHHHHHHHHHhhhh
Q 010128 176 AYRKLVFTVTFFAGVFQSVFGLF-RLGFLVDFLSHAAIVGFMAGAAIVIGLQQLKG 230 (517)
Q Consensus 176 ~~~~~~~~~~~l~Gv~~~llg~l-rlg~l~~fip~pVi~Gf~~gigi~I~~~ql~~ 230 (517)
+ .....+|++.++++++ +++.++.++|.||+.|.+...=-.+....++.
T Consensus 295 ---r---~~~~~~~~~lil~~l~~~~~~l~~~iP~~vlgg~~l~~~~~i~~~g~~~ 344 (406)
T TIGR03173 295 ---R---YVVAAAGVILVLLGLFPKLAALVASIPQPVLGGAGLVMFGMVAASGIRI 344 (406)
T ss_pred ---h---HhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1346788888888887 68999999999999996554333344444443
No 25
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=90.60 E-value=11 Score=40.41 Aligned_cols=118 Identities=11% Similarity=0.006 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHH----HHHHhhCCCc------chhhHHhhhhhHHHHhccCCCccccchhHHHHHHHHHHHHhhcC
Q 010128 100 LMAGLTLASLSIPQSI----GYANLAKLDP------QYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQNVQD 169 (517)
Q Consensus 100 i~aGltv~~~~iPq~i----aya~laglpp------~~gL~s~~i~~liyalfGss~~~~~Gp~a~~sl~~~~~v~~~~~ 169 (517)
++.-+.++++..-+.+ |.+...+-++ .-|+.+-.+.+++-++||+.+.... +-+.-+++. .+..
T Consensus 242 il~~~~~~lv~~~e~iG~~~a~~~~~~~~~~~~~~l~rgi~~dGi~s~laglfg~~p~tt~---sqNvGvi~~--TgV~- 315 (433)
T PRK11412 242 ILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPF---VSSIGLLTQ--TGDY- 315 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchhhccHHHHHHHhcCCCCCCch---hhhhhhhhh--cCCc-
Confidence 4444444444444433 3344444321 3689999999999999998776533 222211110 0000
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHhhccHhHHHHHHHHHHHHHHHHhhhhhhCc
Q 010128 170 PAADPVAYRKLVFTVTFFAGVFQSVFGLF-RLGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGI 234 (517)
Q Consensus 170 ~~~~~~~~~~~~~~~~~l~Gv~~~llg~l-rlg~l~~fip~pVi~Gf~~gigi~I~~~ql~~~~G~ 234 (517)
. --....+|++.+++|++ |++.++.-+|.||++|...-.--.++..+++.+-+.
T Consensus 316 -----S------R~v~~~aa~ilillgl~PK~~alia~IP~pVlGg~~~~~Fg~I~~~Gi~~l~~~ 370 (433)
T PRK11412 316 -----R------RRSFIYGSVMCLLVALIPALTRLFCSIPLPVSSAVMLVSYLPLLGSALVFSQQI 370 (433)
T ss_pred -----h------hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 0 12456788999999988 689999999999999999887777888877766543
No 26
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=88.38 E-value=38 Score=37.56 Aligned_cols=106 Identities=12% Similarity=0.054 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcCCCchHHHHHhHHHHHhhhccCccCcccchhhHHH-------HhhCCC-
Q 010128 343 QTAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVN-------FSAGCQ- 414 (517)
Q Consensus 343 ~~~~~~~~i~iv~~~~~~~~~~~~~~~~~~~~d~nqEL~a~GiaNi~~~lfg~~p~~~s~srS~v~-------~~~G~~- 414 (517)
.=+..++..+++.+-+.++.+... ..++...|.+-.+..++.++||+.+....-.-+... .+.|..
T Consensus 16 ~Di~aGltv~~~~iP~~~ayA~la------glpp~~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~~v~~~~~~~ 89 (563)
T TIGR00815 16 GDLMAGLTVGILLIPQAMAYAILA------GLSPIYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGSVIARVGLQY 89 (563)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHc------CCCchhhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHHHHHHhcCCC
Confidence 334456777888888888877532 357777899999999999999998854332222221 122222
Q ss_pred cc---------hHHHHHHHHHHHHHHH-hhHHHHhhhHHHHHHHHHHHhh
Q 010128 415 TV---------VSNIVMAITVLLSLEL-FTSLLYYTPIAILASIILSALP 454 (517)
Q Consensus 415 T~---------ls~iv~a~~~ll~l~~-l~~l~~~iP~~vLaaili~~~~ 454 (517)
.. ..++.+|++.+++.++ ++-+.+++|.+++.|.+--+++
T Consensus 90 ~~~~~~~~~a~~l~~l~Gi~~~~~g~lrlG~l~~~is~~Vi~Gf~~g~a~ 139 (563)
T TIGR00815 90 LFDCDAIRLAFTLTLLAGIFQVILGLLRLGFLIEFLSHAVISGFMTGAAI 139 (563)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHH
Confidence 22 6677788877777766 8899999999999666544333
No 27
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=87.84 E-value=2.8 Score=44.12 Aligned_cols=20 Identities=10% Similarity=0.079 Sum_probs=8.8
Q ss_pred HHHHhHHHHHhhhccCccCc
Q 010128 380 MVAMGFMNIVGSLTSCYVAT 399 (517)
Q Consensus 380 L~a~GiaNi~~~lfg~~p~~ 399 (517)
+..-=.++-++..+++.-++
T Consensus 269 ~~r~l~~dg~~~~l~gl~G~ 288 (389)
T PF00860_consen 269 IRRGLLADGLGTILAGLFGT 288 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHT-
T ss_pred hcccceeeeeeeeechhhcC
Confidence 44444444445555544444
No 28
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=84.20 E-value=21 Score=39.52 Aligned_cols=103 Identities=21% Similarity=0.171 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCcCCCchHHHHHhHHHHHhhhccCccCcccchh--hHHHHhhCC----Cc---
Q 010128 345 AKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSR--TAVNFSAGC----QT--- 415 (517)
Q Consensus 345 ~~~~~~i~iv~~~~~~~~~~~~~~~~~~~~d~nqEL~a~GiaNi~~~lfg~~p~~~s~sr--S~v~~~~G~----~T--- 415 (517)
+..++..+++.+=+.++.++. .| .++...|.+-=++-++-++||+.|.--+-.. +.+...+.. .+
T Consensus 25 l~AGltva~valP~ama~a~~----aG--v~p~~GLyas~i~~~v~alfGgs~~~i~GPt~a~~~v~a~~i~~~~~~g~~ 98 (554)
T COG0659 25 LLAGLTVAAVALPLAMAFAIA----AG--VPPEAGLYASIVAGIIYALFGGSRGLISGPTGAFAVVLAAVIASLVETGLA 98 (554)
T ss_pred HHHHHHHHHHHhHHHHHHHHH----cC--CCHHHHHHHHHHHHHHHHHHcCCccceeccchhhHHHHHHHHHHHHHHHHH
Confidence 335566677777777766652 22 7999999999999999999999885422222 111111111 22
Q ss_pred --chHHHHHHHHHHHHHHH-hhHHHHhhhHHHHHHHHHHHh
Q 010128 416 --VVSNIVMAITVLLSLEL-FTSLLYYTPIAILASIILSAL 453 (517)
Q Consensus 416 --~ls~iv~a~~~ll~l~~-l~~l~~~iP~~vLaaili~~~ 453 (517)
-.+.+.+|++.+++.++ ++-+++++|.+|+.|.+--.+
T Consensus 99 ~~~~~tllaGv~~i~~G~lRLG~li~fip~pVl~Gf~~Gia 139 (554)
T COG0659 99 LAFLATLLAGVFQILLGLLRLGRLIRFIPRPVLIGFTAGIA 139 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHH
Confidence 34455566666666655 889999999999976654333
No 29
>PRK11660 putative transporter; Provisional
Probab=84.15 E-value=56 Score=36.23 Aligned_cols=114 Identities=13% Similarity=0.141 Sum_probs=71.0
Q ss_pred ChhhhHhhHHHHHHHHHHHHHHHHH----HHHhhC--CCcchhhHHhhhhhHHHHhccCCCccccchhHHHHHHHHHHHH
Q 010128 92 KASKFKSDLMAGLTLASLSIPQSIG----YANLAK--LDPQYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQ 165 (517)
Q Consensus 92 ~~~~l~~Di~aGltv~~~~iPq~ia----ya~lag--lpp~~gL~s~~i~~liyalfGss~~~~~Gp~a~~sl~~~~~v~ 165 (517)
+++.+..-+...++++++..=+++. ++...+ .++-.=|.+-.+++++-++||+.+... -.+- +.+.
T Consensus 274 ~~~~~~~ll~~a~~iaiv~~iesl~~~~~~~~~~~~~~d~n~EL~a~G~aNi~~~~fgg~p~~~--s~sr------Sa~n 345 (568)
T PRK11660 274 SWDLIRALLPAAFSMAMLGAIESLLCAVVLDGMTGTKHSANSELVGQGLGNIVAPFFGGITATA--AIAR------SAAN 345 (568)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHhHHHHHHHHhCcccccc--hHHH------HHHH
Confidence 5555655566666777766655553 333333 445567899999999999999976421 1111 1111
Q ss_pred -hhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccHhHHHHHHHHHHHHHH
Q 010128 166 -NVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRLGFLVDFLSHAAIVGFMAGAAIVIG 224 (517)
Q Consensus 166 -~~~~~~~~~~~~~~~~~~~~~l~Gv~~~llg~lrlg~l~~fip~pVi~Gf~~gigi~I~ 224 (517)
+.+.. .+ .+++++|++.++.-++ ++.+.+++|.+++.|.+.-+|+.++
T Consensus 346 ~~aGar-------T~---la~iv~a~~~ll~ll~-l~~ll~~iP~~vLa~ili~~~~~m~ 394 (568)
T PRK11660 346 VRAGAT-------SP---ISAVIHALLVLLALLV-LAPLLSYLPLSAMAALLLMVAWNMS 394 (568)
T ss_pred HhcCCC-------cH---HHHHHHHHHHHHHHHH-HHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 11110 11 2456666655554444 6789999999999999999988764
No 30
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=84.13 E-value=5.6 Score=42.43 Aligned_cols=188 Identities=17% Similarity=0.085 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHhhhccccccccCcchhHHHHHHHHHHHHHhcccCCCeeeeecccc----CCCCCCCCccC-CchhhHH
Q 010128 268 CSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKHIKG----GLNPSSAHQLQ-LTGPHLG 342 (517)
Q Consensus 268 ~~~l~~ll~~~~~~~~~~~~~~~~~~~~Li~ii~~t~i~~~~~~~~~~~~~vg~ip~----glp~~~~p~~~-~~~~~~~ 342 (517)
.+.++.++..-.+++..+.. .-.+.++++.++.|..-. ..|.+.. .-|.+++|.+. |....-.
T Consensus 177 ~la~~tl~~il~~~~f~~g~------~~~i~ILiGlv~G~~la~------~~G~vdf~~v~~a~w~~~P~~~~fg~~F~~ 244 (451)
T COG2233 177 GLALVTLLIILLINRFGKGF------LRRIPILIGLVVGYLLAL------FMGMVDFSGVAEAPWFALPTPFYFGMAFDW 244 (451)
T ss_pred HHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHHHHHH------HhCCcCccccccCceeeCCcccCCCeeecH
Confidence 34444444444444443321 356788888888887643 2232222 34556677653 2223334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcCCCchHHHHHhHHHHHhhhccCccCcccchhhHHHHhhC--CCcchHHH
Q 010128 343 QTAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAG--CQTVVSNI 420 (517)
Q Consensus 343 ~~~~~~~~i~iv~~~~~~~~~~~~~~~~~~~~d~nqEL~a~GiaNi~~~lfg~~p~~~s~srS~v~~~~G--~~T~ls~i 420 (517)
.++...+.++++...|+++--++.++..|++.|.|+.+..--.++-++++.++.-++ +..|......| .-|+..+-
T Consensus 245 ~ail~m~~v~iV~~~E~~G~i~A~~~itg~~~~~~~~l~rg~~aDGlat~iag~fg~--~p~TtfaqNiGvv~lT~v~Sr 322 (451)
T COG2233 245 GAILTMLPVAIVTIVEHTGDITATGEITGRDLDGKPRLRRGLLADGLATLIAGLFGG--FPNTTFAQNIGVVALTGVYSR 322 (451)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHhHhCCcCccCcccccceeeccHHHHHHHhcCC--CCCCchhhceeeeeeccCChh
Confidence 556667889999999999999999999999999999999999999999999988744 77778878888 46777777
Q ss_pred HHHHHHHHHHHHhhHHHHhhhHHHHHHHH------HHHhhccCCHH--HHHHHhcCChhhHHH
Q 010128 421 VMAITVLLSLELFTSLLYYTPIAILASII------LSALPGLIDIN--EAINIYKVDKLDFLA 475 (517)
Q Consensus 421 v~a~~~ll~l~~l~~l~~~iP~~vLaail------i~~~~~li~~~--~~~~l~k~~~~d~~i 475 (517)
........++. ++..+|+. ++++ +.-+..++-+. ...-+.-..+.|+--
T Consensus 323 ~V~~~aavili----~lgl~pk~--~al~~sIP~pVlGGa~ivmFG~Ia~sGir~l~~~~~~~ 379 (451)
T COG2233 323 YVIAGAAVILI----LLGLFPKF--GALIQSIPSPVLGGAMLVLFGMIAASGIRILIRNKVDR 379 (451)
T ss_pred HHHHHHHHHHH----HHHhhHHH--HHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHhccccc
Confidence 76666555553 36677774 3332 22233333333 233444566777743
No 31
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=83.58 E-value=9.2 Score=40.64 Aligned_cols=112 Identities=19% Similarity=0.240 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHH----HHHhhCCCc------chhhHHhhhhhHHHHhccCCCccccchhHHHHHHHHHHHHhhcCCCCC
Q 010128 104 LTLASLSIPQSIG----YANLAKLDP------QYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQNVQDPAAD 173 (517)
Q Consensus 104 ltv~~~~iPq~ia----ya~laglpp------~~gL~s~~i~~liyalfGss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~ 173 (517)
+..+++..-++++ .+..+|-++ .-++.+-.+++++-++||+.+...... .+-+. ..-+ .
T Consensus 240 ~~i~lv~~~es~g~~~a~a~~~g~~~~~~~~~~r~l~adGl~~i~aglfG~~p~t~~se---n~g~~----~~T~----~ 308 (415)
T TIGR00801 240 LPVAIVSLVESIGDITATADVSGRDLSGDPRLHRGVLADGLATLLAGLFGGFPNTTFAQ---NIGVI----ALTR----V 308 (415)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhCCCCCCCccccchHHHhhHHHHHHHhcCCCCCcchhh---hheee----eecC----C
Confidence 4455555555553 444566532 378999999999999999876543322 11110 0000 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHhhccHhHHHHHHHHHHHHHHHHhhhhhh
Q 010128 174 PVAYRKLVFTVTFFAGVFQSVFGLF-RLGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLL 232 (517)
Q Consensus 174 ~~~~~~~~~~~~~l~Gv~~~llg~l-rlg~l~~fip~pVi~Gf~~gigi~I~~~ql~~~~ 232 (517)
.. + .+...+|++.++++++ |++.++..+|.||+.|.....--.+..+.++.+.
T Consensus 309 ~s---r---~~~~~~a~~~i~~~l~pk~~~l~~~iP~~vlgg~~l~~~~~i~~~gi~~l~ 362 (415)
T TIGR00801 309 AS---R---WVIVGAAVILIALGFFPKIAALITSIPSPVLGGASIVMFGMIAASGIRILI 362 (415)
T ss_pred Cc---h---HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 1 1567788888998988 7899999999999998888666666666666543
No 32
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=73.67 E-value=25 Score=37.61 Aligned_cols=107 Identities=18% Similarity=0.247 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHH----HHHhhC--CCc--chhhHHhhhhhHHHHhccCCCccccchhHHHHHHHHHHHHhhcCCCCChHH
Q 010128 105 TLASLSIPQSIG----YANLAK--LDP--QYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQNVQDPAADPVA 176 (517)
Q Consensus 105 tv~~~~iPq~ia----ya~lag--lpp--~~gL~s~~i~~liyalfGss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~~ 176 (517)
...++..-++++ .+...| .++ .-++.+-.+++++-+++|+++....+-..-...++
T Consensus 254 ~~~lv~~~esiG~~~a~~~~~~~~~~~~i~r~l~adGl~t~~agl~g~~p~tt~~en~g~i~~T---------------- 317 (429)
T TIGR03616 254 PVALILVAENLGHFKAVAGMTGRNLDPYMGRAFVGDGLATMLSGSVGGTGVTTYAENIGVMAVT---------------- 317 (429)
T ss_pred HHHHHHHHHhhHHHHHHHHHhCCCCCchhccchhhhhHHHHHHHhcCCCCCcceeeeeeeeeec----------------
Confidence 334444445443 333444 333 37899999999999999988765331110000000
Q ss_pred HHHHH-HHHHHHHHHHHHHHHhh-hhhhHHhhccHhHHHHHHHHHHHHHHHHhhh
Q 010128 177 YRKLV-FTVTFFAGVFQSVFGLF-RLGFLVDFLSHAAIVGFMAGAAIVIGLQQLK 229 (517)
Q Consensus 177 ~~~~~-~~~~~l~Gv~~~llg~l-rlg~l~~fip~pVi~Gf~~gigi~I~~~ql~ 229 (517)
..+ -.....+|++.+++|++ |++.++..+|.||+.|.+.-.--.+....++
T Consensus 318 --~v~SR~v~~~a~~~lillgl~Pk~~al~~~IP~pVlgG~~i~~fg~i~~~Gi~ 370 (429)
T TIGR03616 318 --KVYSTLVFVAAAVFAILLGFSPKFGALIHTIPVAVLGGASIVVFGLIAVAGAR 370 (429)
T ss_pred --CcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 000 12455678888888887 5889999999999999998777777777777
No 33
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=69.50 E-value=35 Score=33.71 Aligned_cols=132 Identities=13% Similarity=0.056 Sum_probs=93.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcCCCchHHHHHhHHHHHhhhccCccCcccchhhHHHHhhCCCcc
Q 010128 337 TGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTV 416 (517)
Q Consensus 337 ~~~~~~~~~~~~~~i~iv~~~~~~~~~~~~~~~~~~~~d~nqEL~a~GiaNi~~~lfg~~p~~~s~srS~v~~~~G~~T~ 416 (517)
..+.+..++.++++..+.+....-+.++...++.+.+-+.--.=.+.=++.++||+-+|...+-+..+-..+.++..-+-
T Consensus 146 ~~~~~~~a~~ia~v~~~~s~~~~~~~~~~~~~~~d~n~El~a~G~aNi~s~~~gg~p~~~s~srs~~~~~~Ga~t~~s~~ 225 (280)
T PF00916_consen 146 ILDLLPTALAIAIVGFIESLLIAKSIAKKTGYRIDPNQELIALGLANIVSGLFGGMPGSGSFSRSAVNYRAGARTRLSGL 225 (280)
T ss_pred ccccchhHHHHHHHHHHHHHHhhhhhcccccccCCcHHHHHHhhhccccchhhcccccccccccchHHHhcCcceeehhH
Confidence 34557788888888888888888888888787878777777767788889999999988888888999999999999899
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHhhccCCHHHHHHHhcCC
Q 010128 417 VSNIVMAITVLLSLELFTSLLYYTPIAILASIILSALPGLIDINEAINIYKVD 469 (517)
Q Consensus 417 ls~iv~a~~~ll~l~~l~~l~~~iP~~vLaaili~~~~~li~~~~~~~l~k~~ 469 (517)
+++++..++++...-++..+=..+=-+++--+.+- .++.-+.+.+++.-|.|
T Consensus 226 ~~~~~~l~~l~~~~~~l~~iP~~~La~ili~~~~~-l~~~~~~~~~~~~~~~d 277 (280)
T PF00916_consen 226 ISALFVLLVLLFLAPLLAYIPKAVLAAILIVVGIS-LIDWSSLRRLWRVSKAD 277 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCHHHHHHHhcCChhh
Confidence 99999888877766555433223323333222222 34444444455554443
No 34
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=49.09 E-value=73 Score=33.39 Aligned_cols=175 Identities=16% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhh---hhhhHHh-hccHhHHHHHHHHHHHHHHHHhhhhhhCccccCCCccHHHHHHHHHhccccc
Q 010128 182 FTVTFFAGVFQSVFGLF---RLGFLVD-FLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHHS 257 (517)
Q Consensus 182 ~~~~~l~Gv~~~llg~l---rlg~l~~-fip~pVi~Gf~~gigi~I~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 257 (517)
...|+...+..+++|-+ |+.++-+ ++|+||+.|++.++-.....+-...-++++
T Consensus 7 ~~~tl~~a~lllllG~~l~kki~fl~k~~IPepVvgG~i~ail~~~~~~~~~~~~~fd---------------------- 64 (404)
T COG0786 7 ALETLILAILLLLLGRFLVKKIKFLKKYCIPEPVVGGLIFAILLLLLHGFGGVSLNFD---------------------- 64 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHccCCcchHHHHHHHHHHHHHHhcceEEEeCC----------------------
Q ss_pred CcchHHHHHHHHHHHHHHH--HHHhhhccccccccCcchhHHHH---HHHHHHHHHhcccCCCeeeeecccc--CCCCCC
Q 010128 258 YWYPLNFVLGCSFLIFLLI--ARFIGRRNKKLFWLPAIAPLLSV---ILSTLIVYLTKADKHGVKIVKHIKG--GLNPSS 330 (517)
Q Consensus 258 ~~~~~~~~ig~~~l~~ll~--~~~~~~~~~~~~~~~~~~~Li~i---i~~t~i~~~~~~~~~~~~~vg~ip~--glp~~~ 330 (517)
.+.++..+-..+-.+-+- .++++|..++..+.-..+..+++ +++..++-..+.|..---..|.++- |.-.-.
T Consensus 65 -~~l~~~fmliFFttiglsa~~~~lkkgGk~l~if~~~a~~l~~~Qn~igi~la~~lgidpl~gllagsIsl~GGHGtaA 143 (404)
T COG0786 65 -TSLQDVFMLIFFATIGLSASFKLLKKGGKKLAIFLATAAGLAVLQNFIGIGLAKLLGLDPLIGLLAGSISLVGGHGTAA 143 (404)
T ss_pred -cccccHHHHHHHHHhccccchhHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHhcceeecCCCchHH
Q ss_pred CCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhcCCcCCCchH
Q 010128 331 AHQLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFA----SIKGYHLDGNKE 379 (517)
Q Consensus 331 ~p~~~~~~~~~~~~~~~~~~i~iv~~~~~~~~~~~~~----~~~~~~~d~nqE 379 (517)
--...|...-...+...+++.+-++++-.-.++--++ +|++.+.++++|
T Consensus 144 A~~~~f~~~G~~~A~~va~A~ATfGlv~GgliGgpva~~li~k~~l~~~~~~~ 196 (404)
T COG0786 144 AWGPTFEDLGAEGATEVAMASATFGLVAGGLIGGPVARWLIKKNKLKPDPTKD 196 (404)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHHhHhcCcHHHHHHHHhcCCCCCCCCC
No 35
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=48.07 E-value=53 Score=30.95 Aligned_cols=57 Identities=16% Similarity=0.101 Sum_probs=45.6
Q ss_pred HhhhHHHHHHHHHHHhhccC-CHHHHHHHhcCChhhHHHHHHHHHHHHHHhHHHHHHH
Q 010128 438 YYTPIAILASIILSALPGLI-DINEAINIYKVDKLDFLACIGAFLGVLFASVEIGLLA 494 (517)
Q Consensus 438 ~~iP~~vLaaili~~~~~li-~~~~~~~l~k~~~~d~~i~~~~~~~~~~~~~~~Gi~~ 494 (517)
..+...+|-..++.+|.++= |...++++++.++.-..+-+.+.+.++..+...+...
T Consensus 23 ~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~ll 80 (191)
T PF03956_consen 23 DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLLL 80 (191)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56778889999999999996 6678899999999988888888777777665555444
No 36
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=46.99 E-value=3.7e+02 Score=28.38 Aligned_cols=103 Identities=19% Similarity=0.134 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCcCCCch-------HHHHHhHHHHHhhhccCccCcccchh--hHHH-HhhCC
Q 010128 344 TAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNK-------EMVAMGFMNIVGSLTSCYVATGSFSR--TAVN-FSAGC 413 (517)
Q Consensus 344 ~~~~~~~i~iv~~~~~~~~~~~~~~~~~~~~d~nq-------EL~a~GiaNi~~~lfg~~p~~~s~sr--S~v~-~~~G~ 413 (517)
.+..+++..++++..+..+.-.-++.-| .|++| -.++.|++++.=+..-=+|....-|- .++- ...+.
T Consensus 23 ~~~aG~va~lvg~~~~~~iv~~a~~~~g--~s~aq~~swl~a~~~~~Gl~ti~lS~~~r~Pi~~awStPGaAll~~~~~~ 100 (395)
T TIGR00843 23 TLIAGFLAVLIGYAGPAAIFFQAAIKAG--ASTAMIIGWITAIGIAAAVSGIFLSIRFKTPVLTAWSAPGAALLVTGFPG 100 (395)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecCchHHHHHHHhcCC
Confidence 3456677788888877766544333333 33333 34777888888787778888776662 1122 22221
Q ss_pred CcchH-----HHHHHHHHHHHHH--HhhHHHHhhhHHHHHHHH
Q 010128 414 QTVVS-----NIVMAITVLLSLE--LFTSLLYYTPIAILASII 449 (517)
Q Consensus 414 ~T~ls-----~iv~a~~~ll~l~--~l~~l~~~iP~~vLaail 449 (517)
-.++ .+++|+++++..+ .+..+.++||.++.++++
T Consensus 101 -~~~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amL 142 (395)
T TIGR00843 101 -ISLNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAML 142 (395)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 2343 4445555444333 367788999999998887
No 37
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=37.35 E-value=1.9e+02 Score=30.56 Aligned_cols=40 Identities=15% Similarity=0.410 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhh---hhhhHHh-hccHhHHHHHHHHHHHHHH
Q 010128 185 TFFAGVFQSVFGLF---RLGFLVD-FLSHAAIVGFMAGAAIVIG 224 (517)
Q Consensus 185 ~~l~Gv~~~llg~l---rlg~l~~-fip~pVi~Gf~~gigi~I~ 224 (517)
|+....+.+++|.+ |..++-| ++|.||++|++.++.+.+.
T Consensus 8 t~~la~~lLllG~~Lr~kv~~Lqk~~IPapViGGll~al~l~l~ 51 (398)
T TIGR00210 8 TLVVAILVLLLGRYLVKKIKFLKSFNIPEPVVGGVLVALALLLI 51 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 44444555556644 2444554 8999999999998776664
No 38
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=35.94 E-value=1.5e+02 Score=32.03 Aligned_cols=77 Identities=21% Similarity=0.283 Sum_probs=47.2
Q ss_pred hhhHHhhhhhHHHHhccCCCccccchhHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHh
Q 010128 127 YGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLF-RLGFLVD 205 (517)
Q Consensus 127 ~gL~s~~i~~liyalfGss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~Gv~~~llg~l-rlg~l~~ 205 (517)
-|...-.+++++-++||+......-...+- ++ .+.+.++ .. ..=++|.+++++|++ |+|-+..
T Consensus 309 Rgi~~eGig~lL~gl~G~gtG~Tt~~ENig--ll--~vTKVgS-----Rr-------vvQ~aa~fmI~~~i~gKFgA~fA 372 (510)
T KOG1292|consen 309 RGIGWEGIGSLLAGLFGTGTGSTTSVENIG--LL--GVTKVGS-----RR-------VVQIAAGFMIFFGIFGKFGAFFA 372 (510)
T ss_pred hhhhhhhHHHHHHHhhCCCccceeecccee--eE--eeeeeee-----ee-------ehhhhHHHHHHHHHHHHHHHHHH
Confidence 466667789999999998665432111110 00 0011110 00 122567788888877 6888999
Q ss_pred hccHhHHHHHHHHH
Q 010128 206 FLSHAAIVGFMAGA 219 (517)
Q Consensus 206 fip~pVi~Gf~~gi 219 (517)
-+|+|++.|..+-.
T Consensus 373 sIP~piv~~l~c~~ 386 (510)
T KOG1292|consen 373 SIPDPIVGGLLCIL 386 (510)
T ss_pred cCcHHHHHHHHHHH
Confidence 99999999977643
No 39
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=35.22 E-value=7.2e+02 Score=28.27 Aligned_cols=102 Identities=13% Similarity=0.223 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHh----hC--CCcchhhHHhhhhhHHHHhccCCCccccchhHHHHHHHHHHHHhhcCCCCChHH
Q 010128 103 GLTLASLSIPQSIGYANL----AK--LDPQYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQNVQDPAADPVA 176 (517)
Q Consensus 103 Gltv~~~~iPq~iaya~l----ag--lpp~~gL~s~~i~~liyalfGss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~~ 176 (517)
++.++++.+=..++-+.. -+ +++-.=|++-.+..++-++|+.-+. .|.++= +++...... .
T Consensus 333 ~~~i~iva~~~~iai~k~fa~~~~y~vd~nqELiAlG~~Ni~sSff~~~p~--tgs~sR------Sav~~~sG~-~---- 399 (665)
T KOG0236|consen 333 AFAIAIVALLEHIAIGKSFASLHGYKVDSNQELIALGISNILSSFFGCYPT--TGSFSR------SAVNIKSGG-R---- 399 (665)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCeeCCChHHHHHHHHHHhhhhhceEcc--cchhhH------HHHHhhcCC-c----
Confidence 555666665555655432 22 5556668899999999999987553 222222 222221100 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccHhHHHHHHHHHHHH
Q 010128 177 YRKLVFTVTFFAGVFQSVFGLFRLGFLVDFLSHAAIVGFMAGAAIV 222 (517)
Q Consensus 177 ~~~~~~~~~~l~Gv~~~llg~lrlg~l~~fip~pVi~Gf~~gigi~ 222 (517)
.++ ..+++|++.++ .++-++.+..|+|..++...+-.++.-
T Consensus 400 -T~~---s~i~~~~~vl~-~l~~l~p~f~~iP~~vLaaIIi~a~~~ 440 (665)
T KOG0236|consen 400 -TQV---AGIVSAALVLL-ALLFLGPLFYYIPKCVLAAIIISALIG 440 (665)
T ss_pred -chH---HHHHHHHHHHH-HHHHHHHHhhhhhHHHHHHHHHHHhhH
Confidence 111 23333333333 333378899999999999988877765
No 40
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=32.57 E-value=65 Score=28.04 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=13.0
Q ss_pred HhHHHHHHHHHHHHHHHHHhhcCCcc
Q 010128 486 ASVEIGLLAAVIFLCKKIFFPLEGIS 511 (517)
Q Consensus 486 ~~~~~Gi~~Gv~~s~~~~l~~~~~~~ 511 (517)
+|+..|+ +|+++-+.++++|+.|..
T Consensus 71 ~gv~aGv-Ig~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 71 FGVMAGV-IGIILLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHS---
T ss_pred HHHHHHH-HHHHHHHHHHHHHHhccC
Confidence 4555565 556666666666666554
No 41
>PRK12600 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=29.90 E-value=1e+02 Score=25.51 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCcCC
Q 010128 345 AKIGLISAVVALTEAIAVGRSFASIKGYHLD 375 (517)
Q Consensus 345 ~~~~~~i~iv~~~~~~~~~~~~~~~~~~~~d 375 (517)
+..+++.++++|+.+++.+|-+++..-.+-|
T Consensus 61 ldvalvlAll~Fv~tva~Aryl~~g~~~~~~ 91 (94)
T PRK12600 61 LEVILLIGILAFIGTAAFSKFIEKGKVIERD 91 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCcCC
Confidence 3456778999999999999998765444434
No 42
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=29.68 E-value=1.7e+02 Score=22.02 Aligned_cols=17 Identities=12% Similarity=0.511 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHhc
Q 010128 294 APLLSVILSTLIVYLTK 310 (517)
Q Consensus 294 ~~Li~ii~~t~i~~~~~ 310 (517)
+..++++++-+++|+.+
T Consensus 41 GSAIAI~lGLvLAy~GG 57 (60)
T PF03818_consen 41 GSAIAIVLGLVLAYIGG 57 (60)
T ss_pred hHHHHHHHHHHHHHHcc
Confidence 77899999999999765
No 43
>PF05437 AzlD: Branched-chain amino acid transport protein (AzlD); InterPro: IPR008407 This family consists of a number of bacterial and archaeal branched-chain amino acid transport proteins. AzlD, a member of this group, has been shown by mutational analysis to be involved in branched-chain amino acid transport, and to be involved in conferring resistance to 4-azaleucine []. However, its exact role in these processes is not yet clear []. Based on its hydropathy profile, it has been suggested to be a membrane protein [].
Probab=28.22 E-value=3.1e+02 Score=22.35 Aligned_cols=62 Identities=23% Similarity=0.253 Sum_probs=33.0
Q ss_pred hhHHHHhhhHHHHHHHHHHHhhccCCHHHHHHHhcCChhhHHHHHHHHHHHHHH-hHHHHHHHHHHH
Q 010128 433 FTSLLYYTPIAILASIILSALPGLIDINEAINIYKVDKLDFLACIGAFLGVLFA-SVEIGLLAAVIF 498 (517)
Q Consensus 433 l~~l~~~iP~~vLaaili~~~~~li~~~~~~~l~k~~~~d~~i~~~~~~~~~~~-~~~~Gi~~Gv~~ 498 (517)
....++++|.++++++++...+.--+..+. ..+..+.....++++..... ++...+.+|++.
T Consensus 32 ~~~~l~~vp~avl~aLv~~~i~~~~~~~~~----~~~~~~l~a~~~~~~~~~~~~~~~~~v~~G~~~ 94 (99)
T PF05437_consen 32 VRRFLRYVPPAVLAALVVPSIFFPTGSLEL----SLGNPYLIAALVAALVALRTRNLLLSVLAGVAA 94 (99)
T ss_pred HHHHHHHhHHHHHHHHHHHHHccCcccccc----ccchHHHHHHHHHHHHHHHHcchHHHHHHHHHH
Confidence 345789999999999988755432211000 01222333344444444433 466666666554
No 44
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=27.92 E-value=4.8e+02 Score=25.33 Aligned_cols=79 Identities=18% Similarity=0.294 Sum_probs=49.8
Q ss_pred hHHHHhccCCCcc--ccchhHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccHhHHH
Q 010128 136 PLIYALMGSSREI--AIGPVAVVSMLLSALMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRLGFLVDFLSHAAIV 213 (517)
Q Consensus 136 ~liyalfGss~~~--~~Gp~a~~sl~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~Gv~~~llg~lrlg~l~~fip~pVi~ 213 (517)
.++--+||-++.+ +.-|-+++..+.-.+.++.+.. ..+....++++|++-.++|..=+. +.+ +-+++-.
T Consensus 106 ~~la~~lg~~~~i~~Sl~pkSvTtpiAm~vs~~iGG~-------~sLta~~vvitGi~Ga~~g~~ll~-~~~-i~~~~A~ 176 (226)
T TIGR00659 106 TLLALLLGLGPEIIASLLPKSVTTPIAMHVSEMIGGI-------PAVTAVFVILTGLLGTVFGPMVLR-YFR-VKNEIAR 176 (226)
T ss_pred HHHHHHHCcCHHHHHHhhhHHhhHHHHHHHHHHhCCh-------HHHHHHHHHHHHHHHHHHHHHHHH-HcC-CCcHHHH
Confidence 3334456665544 3445555555555555555422 356778899999998888855222 222 5678999
Q ss_pred HHHHHHHHHH
Q 010128 214 GFMAGAAIVI 223 (517)
Q Consensus 214 Gf~~gigi~I 223 (517)
|+.-|.+-+-
T Consensus 177 GlalG~aaHa 186 (226)
T TIGR00659 177 GLLLGTSSHG 186 (226)
T ss_pred HHHHhHHHHH
Confidence 9999988764
No 45
>COG4129 Predicted membrane protein [Function unknown]
Probab=27.13 E-value=2.4e+02 Score=29.07 Aligned_cols=91 Identities=15% Similarity=0.098 Sum_probs=48.8
Q ss_pred hhCCCcchHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHhhccCCHHHHHHHhcCChhhHHHHHHHHHHHHHH---
Q 010128 410 SAGCQTVVSNIVMAITVLLSLELFTSLLYYTPIAILASIILSALPGLIDINEAINIYKVDKLDFLACIGAFLGVLFA--- 486 (517)
Q Consensus 410 ~~G~~T~ls~iv~a~~~ll~l~~l~~l~~~iP~~vLaaili~~~~~li~~~~~~~l~k~~~~d~~i~~~~~~~~~~~--- 486 (517)
+.|.||=-+|+.+++.++++-++ -.|.++.|++.-+....--..+.++..|+.=..-.+-...+.+...++
T Consensus 8 ~ig~RtlKt~ia~~La~~ia~~l------~~~~~~~A~i~AV~~l~~t~~~s~~~~~~r~~g~~iG~~~a~l~~~l~g~~ 81 (332)
T COG4129 8 KIGARTLKTGLAAGLALLIAHLL------GLPQPAFAGISAVLCLSPTIKRSLKRALQRLLGNALGAILAVLFFLLFGQN 81 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh------CCCchHHHHHHHhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 46777777777777777666533 357788888877755554444555555432222222222222222222
Q ss_pred hHHHHHHHHHHHHHHHHHhh
Q 010128 487 SVEIGLLAAVIFLCKKIFFP 506 (517)
Q Consensus 487 ~~~~Gi~~Gv~~s~~~~l~~ 506 (517)
.+..|+.+.+.+.+...+..
T Consensus 82 ~~~~~v~~~i~i~~~~~~~~ 101 (332)
T COG4129 82 PIAFGVVLLIIIPLLVLLKL 101 (332)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34456666665555554433
No 46
>PHA00736 hypothetical protein
Probab=27.05 E-value=2.9e+02 Score=21.12 Aligned_cols=48 Identities=19% Similarity=0.325 Sum_probs=33.7
Q ss_pred HHHHHHhhCCCcchhhH-HhhhhhHHHHhccCCCccccchhHHHHHHHH
Q 010128 114 SIGYANLAKLDPQYGLY-TSVIPPLIYALMGSSREIAIGPVAVVSMLLS 161 (517)
Q Consensus 114 ~iaya~laglpp~~gL~-s~~i~~liyalfGss~~~~~Gp~a~~sl~~~ 161 (517)
+++.|+-.|+.|..+.. --..-++-|-.-|.-|.+..|-.+..++|.-
T Consensus 4 aislal~tglgpvi~viiil~mmgltykmagkipaii~giastf~lmfm 52 (79)
T PHA00736 4 AISLALQTGLGPVIAIIIILAMMGLTYKMAGKIPAILVGIASTFTLMFM 52 (79)
T ss_pred HHHHHHHcCCccHHHHHHHHHHHhhHHHHhCCccHHHHHHHHHHHHHHH
Confidence 56667778999987654 2344677788788888887777666666654
No 47
>TIGR02847 CyoD cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant.
Probab=26.67 E-value=3.7e+02 Score=22.30 Aligned_cols=54 Identities=17% Similarity=0.257 Sum_probs=39.0
Q ss_pred hhccHhHHHHHHHHHHHHHHHHhhhhhhCccccCCCccHHHHHHHHHhcccccCcchHHHHHHHHHHHHHH
Q 010128 205 DFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHHSYWYPLNFVLGCSFLIFLL 275 (517)
Q Consensus 205 ~fip~pVi~Gf~~gigi~I~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~l~~ll 275 (517)
+.+|+.....++.+.|+.=+..|+..++-++...++ . ||..++..++..+++++
T Consensus 28 ~~~~~~~~~~~i~~~A~iQi~vqL~~FlHl~~~~~~---------------~--~n~~~l~Ft~~i~~iiv 81 (96)
T TIGR02847 28 GTLSKGLTLVIIIVLAVVQILVHLVFFLHLNTSSEQ---------------R--WNLISLLFTILIIFILI 81 (96)
T ss_pred ccCCHhHHHHHHHHHHHHHHHHHHHHHhhccCcccc---------------c--hHHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999988742211 1 67666666655544443
No 48
>PRK10692 hypothetical protein; Provisional
Probab=26.48 E-value=1.8e+02 Score=23.61 Aligned_cols=44 Identities=18% Similarity=0.399 Sum_probs=28.0
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHhhCCCcc--------hhhHHhhhhhHHH
Q 010128 94 SKFKSDLMAGLTLASLSIPQSIGYANLAKLDPQ--------YGLYTSVIPPLIY 139 (517)
Q Consensus 94 ~~l~~Di~aGltv~~~~iPq~iaya~laglpp~--------~gL~s~~i~~liy 139 (517)
..+.++++-|+ |++..--+++|.+++.+|.. ..+++-|++.++.
T Consensus 6 a~~~GN~lMgl--Gmv~Mv~gigysi~~~i~~L~Lp~~~~~gal~~IFiGAllW 57 (92)
T PRK10692 6 ASLLGNVLMGL--GLVVMVVGVGYSILNQLPQLNLPQFFAHGALLSIFVGALLW 57 (92)
T ss_pred hHHHhhHHHHH--HHHHHHHHHHHHHHHhcccCCchHHHHhhHHHHHHHHHHHH
Confidence 35778888875 45555568999998776642 2355555555544
No 49
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=25.46 E-value=4.8e+02 Score=26.55 Aligned_cols=71 Identities=18% Similarity=0.134 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCcCCCchHHHHHhHHHHHhhhccCccCcccchhhHHHHhhCCCcchHHHHHHHHH
Q 010128 347 IGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVSNIVMAITV 426 (517)
Q Consensus 347 ~~~~i~iv~~~~~~~~~~~~~~~~~~~~d~nqEL~a~GiaNi~~~lfg~~p~~~s~srS~v~~~~G~~T~ls~iv~a~~~ 426 (517)
..+...++...-+...+-.+.+..+++ ...++|+++|+. ...-..+..+.|+++|...+...+=+
T Consensus 56 ~~~~~~~~~~~~~~~~~~~l~r~~~~d--------------~~TA~~~~~PGg-~s~m~~la~~~gad~~~Va~~q~lRl 120 (318)
T PF05145_consen 56 PMLLLLVVTLLLSLVGAWLLRRISGLD--------------RATAFFASMPGG-LSEMVALAEEYGADTRRVALVQSLRL 120 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCC--------------hhHHHHHcCCcc-HHHHHHHHHHcCCChhhhHHHHHHHH
Confidence 333344444555555555555554433 125899999944 34457788999999999999888755
Q ss_pred HHHHHH
Q 010128 427 LLSLEL 432 (517)
Q Consensus 427 ll~l~~ 432 (517)
+++.+.
T Consensus 121 ~~Vv~~ 126 (318)
T PF05145_consen 121 LLVVLL 126 (318)
T ss_pred HHHHHH
Confidence 555544
No 50
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=25.16 E-value=83 Score=28.14 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=13.9
Q ss_pred hccccccccCcchhHHHHHHHHH
Q 010128 282 RRNKKLFWLPAIAPLLSVILSTL 304 (517)
Q Consensus 282 ~~~~~~~~~~~~~~Li~ii~~t~ 304 (517)
.-..+.+.+|.|++++++++-.+
T Consensus 24 e~i~~ll~lPiPGsViGMlLL~l 46 (141)
T PRK04125 24 NIIASFLPIPMPASVIGLVLLFV 46 (141)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHH
Confidence 33334445777788887766544
No 51
>COG3715 ManY Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]
Probab=25.11 E-value=4.1e+02 Score=26.43 Aligned_cols=64 Identities=23% Similarity=0.362 Sum_probs=42.4
Q ss_pred CCCchHHHHHhHHHHHhhhccCccCcccchhhHHHHhhCCCcchHHHHHHHHHHHHHHHhhHHHH
Q 010128 374 LDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLELFTSLLY 438 (517)
Q Consensus 374 ~d~nqEL~a~GiaNi~~~lfg~~p~~~s~srS~v~~~~G~~T~ls~iv~a~~~ll~l~~l~~l~~ 438 (517)
+-..-||..+|..|+-++. --=+.+++.--|.....+|..++-+..-.|+-+.....++.-+.+
T Consensus 51 iGatLEL~~LG~~~iGgav-pPD~~~~si~~t~~aI~sg~~~~~~a~~lAiPiA~a~q~l~~~~r 114 (265)
T COG3715 51 IGATLELAALGWANIGGAV-PPDVALASIIGTAFAITSGQGIPEAALALAIPIAVAGQFLTTFVR 114 (265)
T ss_pred HhHHHHHHHHhCcCcccCC-CCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445699999999987733 223456778888899998877666665555555555555444443
No 52
>PRK15065 PTS system mannose-specific transporter subunit IIC; Provisional
Probab=23.88 E-value=7.2e+02 Score=24.66 Aligned_cols=73 Identities=12% Similarity=0.103 Sum_probs=40.3
Q ss_pred hhHHHHhhhHHHH------HHHHHHHhhccCCHHHHHHHhcCChhhHHHHHHHHHHHHHHhHHH-HH-HHHHHHHHHHHH
Q 010128 433 FTSLLYYTPIAIL------ASIILSALPGLIDINEAINIYKVDKLDFLACIGAFLGVLFASVEI-GL-LAAVIFLCKKIF 504 (517)
Q Consensus 433 l~~l~~~iP~~vL------aaili~~~~~li~~~~~~~l~k~~~~d~~i~~~~~~~~~~~~~~~-Gi-~~Gv~~s~~~~l 504 (517)
...+++.+|.-++ |+++=.+|+.|+ ++.+||.+ ........|+.+.++++.. ++ ++|+++++++
T Consensus 167 v~~~~~~iP~~v~~GL~vaggmLPAvGfAmL----l~~i~~k~--~~~ff~lGFvl~ayl~l~~l~iAiig~~iA~i~-- 238 (262)
T PRK15065 167 VQSMLNAIPEVLTGGLNIGGGMIVVVGYAMV----INMMATRE--LMPFFYLGFVLAAFTNLNLIALGVIGVVLALIY-- 238 (262)
T ss_pred HHHHHHHCHHHHHHHHHHHHhhHHHHHHHHH----HHHHhccc--hHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH--
Confidence 3356778998766 555555555554 45666544 4445556777777765432 22 2455555544
Q ss_pred hhcCCcccc
Q 010128 505 FPLEGISLS 513 (517)
Q Consensus 505 ~~~~~~~~~ 513 (517)
++.++...+
T Consensus 239 ~~~~~~~~~ 247 (262)
T PRK15065 239 LQLSPKYGR 247 (262)
T ss_pred HHhcccccc
Confidence 334444333
No 53
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=23.45 E-value=1.1e+03 Score=26.47 Aligned_cols=78 Identities=14% Similarity=0.028 Sum_probs=45.5
Q ss_pred hhhhcCC--cCCCchHHHHHhHHHHHhhhccC---------cc-------------CcccchhhHHHHhhCC--CcchHH
Q 010128 366 FASIKGY--HLDGNKEMVAMGFMNIVGSLTSC---------YV-------------ATGSFSRTAVNFSAGC--QTVVSN 419 (517)
Q Consensus 366 ~~~~~~~--~~d~nqEL~a~GiaNi~~~lfg~---------~p-------------~~~s~srS~v~~~~G~--~T~ls~ 419 (517)
-|.|.|+ ++++.+-..+|=++.++|++... ++ ......++...--.|. ..+...
T Consensus 455 ~DlK~G~~l~~~Pr~~f~~Q~iG~~ig~~v~~~v~~l~~~~~~~~~~~~~~~~~~ap~a~~~aav~~g~~~~~~~~~~~~ 534 (624)
T PF03169_consen 455 QDLKTGHYLGIPPRAQFYAQIIGTIIGAFVAVAVMRLLNQAYPCGPDQGDSFSCPAPQAFAWAAVAWGLIGPQRGLPYSA 534 (624)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCcCcchHHHHHHHHHHHhcCCcccchHHH
Confidence 3556665 67788878888888877776532 11 1233444555555666 566666
Q ss_pred HHHHHHHHHHHHHhhHHHH-hhhHH
Q 010128 420 IVMAITVLLSLELFTSLLY-YTPIA 443 (517)
Q Consensus 420 iv~a~~~ll~l~~l~~l~~-~iP~~ 443 (517)
+..+.++.+++.++.-+.+ ++|+.
T Consensus 535 ~~~~~~~G~~~~i~~~l~~~~~P~~ 559 (624)
T PF03169_consen 535 LPWGFLIGAVLPILFWLLQRKFPSP 559 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCChh
Confidence 6666666665544433333 56774
No 54
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=23.18 E-value=6e+02 Score=25.30 Aligned_cols=74 Identities=14% Similarity=0.050 Sum_probs=41.3
Q ss_pred HHHHHHHHHhh----HHHHhhhHHHH------HHHHHHHhhccCCHHHHHHHhcCChhhHHHHHHHHHHHHHHhHHH-H-
Q 010128 424 ITVLLSLELFT----SLLYYTPIAIL------ASIILSALPGLIDINEAINIYKVDKLDFLACIGAFLGVLFASVEI-G- 491 (517)
Q Consensus 424 ~~~ll~l~~l~----~l~~~iP~~vL------aaili~~~~~li~~~~~~~l~k~~~~d~~i~~~~~~~~~~~~~~~-G- 491 (517)
+...+.+++.+ .+++.+|.-++ |+++=.+|+.|+ ++.+||.+ ...-+.+.|+.+.++++.. +
T Consensus 153 i~~fla~~~G~~~v~~il~~iP~~v~~Gl~vaggmLPAvGfAmL----l~~m~~k~--~~~ff~lGF~laayl~l~~l~i 226 (265)
T TIGR00822 153 IPALIVALVSQSAVQAMLKAIPEVVTHGLQIAGGIIVVVGYAMV----LRMMFKAY--LMPFFYLGFLFAAYTDFSLLAF 226 (265)
T ss_pred HHHHHHHHcCHHHHHHHHHHCHHHHHHHHHHHHhhHHHHHHHHH----HHHHhhcc--hHHHHHHHHHHHHHhCCcHHHH
Confidence 34444445544 46788998776 555555566655 45666654 4444556677666665432 2
Q ss_pred HHHHHHHHHHHH
Q 010128 492 LLAAVIFLCKKI 503 (517)
Q Consensus 492 i~~Gv~~s~~~~ 503 (517)
-++|++++++++
T Consensus 227 Aiig~~~A~i~~ 238 (265)
T TIGR00822 227 GAVGGAGALLYI 238 (265)
T ss_pred HHHHHHHHHHHH
Confidence 234555555543
No 55
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=22.95 E-value=6.2e+02 Score=25.20 Aligned_cols=73 Identities=19% Similarity=0.196 Sum_probs=43.9
Q ss_pred HHHHHHHHHh----hHHHHhhhHHHH------HHHHHHHhhccCCHHHHHHHhcCChhhHHHHHHHHHHHHHHhH--HHH
Q 010128 424 ITVLLSLELF----TSLLYYTPIAIL------ASIILSALPGLIDINEAINIYKVDKLDFLACIGAFLGVLFASV--EIG 491 (517)
Q Consensus 424 ~~~ll~l~~l----~~l~~~iP~~vL------aaili~~~~~li~~~~~~~l~k~~~~d~~i~~~~~~~~~~~~~--~~G 491 (517)
+..++.+++. ..+++.+|.-++ |+++=.+|+.|+ ++.+||.+ ...-..+.|+.+.++++ ..+
T Consensus 154 ~~~fl~~~fG~~~v~~~~~~iP~~v~~GL~vaggmLPAvGfAmL----l~~m~~k~--~~~ff~lGF~l~ayl~~~~~i~ 227 (267)
T PRK09757 154 VIAFLCTYLAQGAMQALVKAMPAWLTHGFEVAGGILPAVGFGLL----LRVMFKAQ--YIPYLIAGFLFVCYIQVSNLLP 227 (267)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH----HHHHhhcc--hHHHHHHHHHHHHHhCCccHHH
Confidence 3334444454 457788998766 555555566655 46677633 55556677888888874 345
Q ss_pred HH-HHHHHHHHH
Q 010128 492 LL-AAVIFLCKK 502 (517)
Q Consensus 492 i~-~Gv~~s~~~ 502 (517)
+. +|+++++..
T Consensus 228 iaiig~~iA~~~ 239 (267)
T PRK09757 228 VAVLGAGFAVYE 239 (267)
T ss_pred HHHHHHHHHHHH
Confidence 43 456666643
No 56
>PRK12657 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=22.71 E-value=1.4e+02 Score=24.96 Aligned_cols=29 Identities=7% Similarity=0.236 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCc
Q 010128 345 AKIGLISAVVALTEAIAVGRSFASIKGYH 373 (517)
Q Consensus 345 ~~~~~~i~iv~~~~~~~~~~~~~~~~~~~ 373 (517)
+..++++++++|+.+++.+|-++++.-.+
T Consensus 65 ldvaLvlAll~Fv~tva~ARyl~~g~~~~ 93 (100)
T PRK12657 65 LDSIMLIAIISFVSSVSISRFIGGGHVFN 93 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 44567789999999999999987654333
No 57
>COG1296 AzlC Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]
Probab=21.45 E-value=1.5e+02 Score=28.90 Aligned_cols=43 Identities=30% Similarity=0.503 Sum_probs=28.7
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHhh---CCCcchhhHHhhhhhHHHH
Q 010128 95 KFKSDLMAGLTLASLSIPQSIGYANLA---KLDPQYGLYTSVIPPLIYA 140 (517)
Q Consensus 95 ~l~~Di~aGltv~~~~iPq~iaya~la---glpp~~gL~s~~i~~liya 140 (517)
.++..+.+++-+.+-.+|.+++|+.++ |+++ +++.....++|+
T Consensus 11 ~f~~G~~~~~Pi~lg~ip~Gl~fG~~a~~~G~s~---~e~~lmS~~iyA 56 (238)
T COG1296 11 EFRQGLKASLPILLGYLPIGLAFGLLAVALGFSP---LEAILMSLLIYA 56 (238)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHcCCcH---HHHHHHHHHHHc
Confidence 455566666667788899999999885 4544 344444556654
No 58
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=21.38 E-value=2.4e+02 Score=22.77 Aligned_cols=43 Identities=21% Similarity=0.437 Sum_probs=27.0
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHhhCCCcc--------hhhHHhhhhhHHH
Q 010128 95 KFKSDLMAGLTLASLSIPQSIGYANLAKLDPQ--------YGLYTSVIPPLIY 139 (517)
Q Consensus 95 ~l~~Di~aGltv~~~~iPq~iaya~laglpp~--------~gL~s~~i~~liy 139 (517)
.+.++++-|+ |++..--+++|++++.+|.. ..+++-|++.++.
T Consensus 7 ~~~GN~lMgl--Gmv~Mv~gigysi~~~~~~L~Lp~~~~~gal~~IFiGAllW 57 (89)
T PF10762_consen 7 FLLGNVLMGL--GMVVMVGGIGYSILSQIPQLGLPQFLAHGALFSIFIGALLW 57 (89)
T ss_pred HHHhhHHHHH--hHHHHHHhHHHHHHHhcccCCCcHHHHhhHHHHHHHHHHHH
Confidence 4677888775 45555668999998766532 2355555555543
No 59
>PF06686 SpoIIIAC: Stage III sporulation protein AC/AD protein family
Probab=21.09 E-value=3.4e+02 Score=19.90 Aligned_cols=47 Identities=9% Similarity=0.313 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhc
Q 010128 153 VAVVSMLLSALMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRLGFLVDFL 207 (517)
Q Consensus 153 ~a~~sl~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~Gv~~~llg~lrlg~l~~fi 207 (517)
.+.++.+.+....+.+. -+.+...++.+|++.+.+..-+++.+.+.+
T Consensus 8 igii~~~l~~vlk~~~~--------~e~a~~isla~~i~I~~~~~~~i~~l~~~i 54 (58)
T PF06686_consen 8 IGIIAAFLALVLKQAGE--------PEYASLISLAGGILIFLLVLPKISSLFETI 54 (58)
T ss_pred HHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666665441 145677889999999999888888877654
No 60
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=20.72 E-value=8.4e+02 Score=24.25 Aligned_cols=28 Identities=7% Similarity=0.161 Sum_probs=21.8
Q ss_pred HHhhhhhhHHhhccHhHHHHHHHHHHHH
Q 010128 195 FGLFRLGFLVDFLSHAAIVGFMAGAAIV 222 (517)
Q Consensus 195 lg~lrlg~l~~fip~pVi~Gf~~gigi~ 222 (517)
+|---...+++.+|+.++.|+..+.|+.
T Consensus 161 ~G~~~v~~il~~iP~~v~~Gl~vaggmL 188 (265)
T TIGR00822 161 VSQSAVQAMLKAIPEVVTHGLQIAGGII 188 (265)
T ss_pred cCHHHHHHHHHHCHHHHHHHHHHHHhhH
Confidence 3444467789999999999999877765
No 61
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=20.57 E-value=5.4e+02 Score=24.88 Aligned_cols=76 Identities=12% Similarity=0.148 Sum_probs=43.4
Q ss_pred CcchHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHhhccCCHHHHHHHh-----cCChhhHHHHHHHHHHHHHHhH
Q 010128 414 QTVVSNIVMAITVLLSLELFTSLLYYTPIAILASIILSALPGLIDINEAINIY-----KVDKLDFLACIGAFLGVLFASV 488 (517)
Q Consensus 414 ~T~ls~iv~a~~~ll~l~~l~~l~~~iP~~vLaaili~~~~~li~~~~~~~l~-----k~~~~d~~i~~~~~~~~~~~~~ 488 (517)
+++...+..|+..+++++. |-++++.++.+++++-++..++ ++..++- ..+++.-+++++
T Consensus 144 ~k~~k~~~~gi~aml~Vf~------------LF~lvmt~g~d~m~fl~v~~ly~~ia~~ik~se~---~~~~lwyi~Y~v 208 (230)
T PF03904_consen 144 QKRQKSMYKGIGAMLFVFM------------LFALVMTIGSDFMDFLHVDHLYKAIASKIKASES---FWTYLWYIAYLV 208 (230)
T ss_pred HHHHHHHHHhHHHHHHHHH------------HHHHHHHhcccchhhhhHHHHHHHHHHHHhhhHh---HHHHHHHHHHhh
Confidence 4566666666655554432 3455566666777665555554 2333333 334455666778
Q ss_pred HHHHHHHHHHHHHHHH
Q 010128 489 EIGLLAAVIFLCKKIF 504 (517)
Q Consensus 489 ~~Gi~~Gv~~s~~~~l 504 (517)
.|-+++|..+.+.-.+
T Consensus 209 PY~~~ig~~i~l~~~~ 224 (230)
T PF03904_consen 209 PYIFAIGLFIYLYEWI 224 (230)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8777777766655444
No 62
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=20.02 E-value=1.9e+02 Score=30.24 Aligned_cols=42 Identities=21% Similarity=0.303 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhh---hhhhHHh-hccHhHHHHHHHHHHHHHHHH
Q 010128 185 TFFAGVFQSVFGLF---RLGFLVD-FLSHAAIVGFMAGAAIVIGLQ 226 (517)
Q Consensus 185 ~~l~Gv~~~llg~l---rlg~l~~-fip~pVi~Gf~~gigi~I~~~ 226 (517)
++....+.+++|.+ |..++-| ++|.||+.|++..+-..+...
T Consensus 8 tl~la~ilLliG~~Lr~ki~~lqk~~IPasvIgGli~~il~~~l~~ 53 (368)
T PF03616_consen 8 TLALASILLLIGKFLRAKIPFLQKLFIPASVIGGLIFAILPLILGG 53 (368)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHccCCchHHHHHHHHHHHHHHHh
No 63
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=20.00 E-value=7e+02 Score=24.22 Aligned_cols=67 Identities=15% Similarity=0.225 Sum_probs=34.0
Q ss_pred hhhHHhhhhhHHHHhccCCCccccch-hHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 010128 127 YGLYTSVIPPLIYALMGSSREIAIGP-VAVVSMLLSALMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLF 198 (517)
Q Consensus 127 ~gL~s~~i~~liyalfGss~~~~~Gp-~a~~sl~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~Gv~~~llg~l 198 (517)
.|+..+.++..+.-+++-..++.-|- .+..|=-+++.-.-+. ++++ -.+....-.++|++..++..+
T Consensus 156 tGi~Gavlg~~llk~~~i~~~~ArGla~G~~sHa~GTara~E~----g~~e-Ga~ssL~m~L~Gi~t~~~aPl 223 (230)
T COG1346 156 TGILGAVLGPLLLKLLRIRHPVARGLALGTASHALGTARAIEL----GEEE-GAMSSLAMVLCGIITVLLAPL 223 (230)
T ss_pred HHHHHHHHHHHHHHHhccCcHHHhHHhhcchhhhhhhHHHHHc----CchH-HHHHHHHHHHHHHHHHHHHHH
Confidence 57777777777777777655555443 2222211222211111 1111 134445556678777776655
Done!