Query 010128
Match_columns 517
No_of_seqs 271 out of 1824
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 20:31:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010128.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010128hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 100.0 6.4E-32 2.2E-36 283.2 31.9 327 106-481 30-374 (429)
2 3qe7_A Uracil permease; uracil 75.1 77 0.0026 32.3 16.5 127 374-502 41-199 (429)
3 1bts_A BAND 3 anion transport 37.1 18 0.00061 21.6 1.8 19 128-146 6-24 (26)
4 2a65_A Leutaa, Na(+):neurotran 8.4 7.1E+02 0.024 25.8 7.5 58 338-399 241-298 (519)
5 1jb0_L Photosystem 1 reaction 5.0 4.8E+02 0.016 22.3 3.1 38 199-237 64-101 (154)
6 3bo0_B Preprotein translocase 4.8 9.1E+02 0.031 16.9 4.4 11 468-478 27-37 (65)
7 2ww9_B Protein transport prote 4.8 9.2E+02 0.031 18.2 4.3 34 172-211 42-75 (80)
8 2l2t_A Receptor tyrosine-prote 4.1 9.2E+02 0.032 16.0 4.5 9 501-509 31-39 (44)
9 2k1k_A Ephrin type-A receptor 4.1 8.4E+02 0.029 15.5 3.6 10 487-496 15-24 (38)
10 1dj7_A Ferredoxin thioredoxin 3.9 6.1E+02 0.021 20.7 2.9 21 363-383 18-38 (117)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=100.00 E-value=6.4e-32 Score=283.15 Aligned_cols=327 Identities=14% Similarity=0.125 Sum_probs=250.2
Q ss_pred HHHHHHHHHHHHHHhhCCCcchhhHHhhhhhHHHHhccCCC-ccccch-hHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 010128 106 LASLSIPQSIGYANLAKLDPQYGLYTSVIPPLIYALMGSSR-EIAIGP-VAVVSMLLSALMQNVQDPAADPVAYRKLVFT 183 (517)
Q Consensus 106 v~~~~iPq~iaya~laglpp~~gL~s~~i~~liyalfGss~-~~~~Gp-~a~~sl~~~~~v~~~~~~~~~~~~~~~~~~~ 183 (517)
.+.+.+|..+ |+||..++++|.++++++++++++| +...|+ ++..+.+.... . ++ ++.+..
T Consensus 30 ~~~v~~Plil------Gl~~~~~l~~agi~Tllq~~~~~~~lP~~~G~sfafi~~~~~i~-~-~g---------~~~~~g 92 (429)
T 3qe7_A 30 GATVLVPVLF------HINPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLL-P-LG---------YEVALG 92 (429)
T ss_dssp HHHHHHHHTT------TSCHHHHHHHHHHHHHHHHHHTTTCCCCCEEECGGGHHHHHHHG-G-GC---------HHHHHH
T ss_pred HHHHHhHHHh------CCCHHHHHHHHHHHHHHHHHHcCCCCCeEecChHHHHHHHHHHH-h-cC---------HHHHHH
Confidence 5667777765 8999999999999999999986555 444787 44444444321 2 32 678899
Q ss_pred HHHHHHHHHHHHHhh--hhh--hHHhhccHhHHHHHHHHHHHHHHHHhhhhhhCccccCCCccHHHHHHHHHhcccccCc
Q 010128 184 VTFFAGVFQSVFGLF--RLG--FLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHHSYW 259 (517)
Q Consensus 184 ~~~l~Gv~~~llg~l--rlg--~l~~fip~pVi~Gf~~gigi~I~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (517)
..+++|+++++++++ |+| ++.|++|+.|++.+++.+|+.++..++++..|... . . +. .
T Consensus 93 avi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~IGl~l~~~~~~~~~~~~~-~--~-------------~~--~ 154 (429)
T 3qe7_A 93 GFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPA-E--G-------------QT--P 154 (429)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTSSCB-T--T-------------BC--C
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHHHHHHHHHHHHhccccCC-C--C-------------cc--c
Confidence 999999999999998 775 89999999999999999999999999987543311 0 0 11 5
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhccccccccCcchhHHHHHHHHHHHHHhcccCCCeeeeeccc-cCCCCCCCCccCCch
Q 010128 260 YPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKHIK-GGLNPSSAHQLQLTG 338 (517)
Q Consensus 260 ~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~~~~~~Li~ii~~t~i~~~~~~~~~~~~~vg~ip-~glp~~~~p~~~~~~ 338 (517)
++.++.+++.++++++++.++.|++.|+ ++.|+++++++++++.++..+ .+.+++.| .++|.+..|+ |++
T Consensus 155 ~~~~~~la~~tl~iii~~~~~~kg~~~~-----~aiLigivvg~~~a~~~G~~d--~~~v~~a~~~~lP~~~~P~--f~~ 225 (429)
T 3qe7_A 155 DSKTIIISITTLAVTVLGSVLFRGFLAI-----IPILIGVLVGYALSFAMGIVD--TTPIINAHWFALPTLYTPR--FEW 225 (429)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSSSTTTTT-----HHHHHHHHHHHHHHHHHHHTT--SSHHHHSCSSCCCCCCCCC--CCH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcccchh-----hHHHHHHHHHHHHHHHhcCCC--cccccccccccccCCCCCc--ccH
Confidence 6778889999998888776655554432 378999999999999987522 22234433 2466665565 444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc----CCCchHHHHHhHHHHHhhhccCccCcccchhhHHHHhhCCC
Q 010128 339 PHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYH----LDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQ 414 (517)
Q Consensus 339 ~~~~~~~~~~~~i~iv~~~~~~~~~~~~~~~~~~~----~d~nqEL~a~GiaNi~~~lfg~~p~~~s~srS~v~~~~G~~ 414 (517)
+.+.. .+.++++.++|++...++.+++.|++ .|.|||+.++|++|+++++||++|+|++..|++++..+|++
T Consensus 226 ~~i~~----i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l~adGla~i~~glfGg~p~Tt~~en~g~i~~tg~~ 301 (429)
T 3qe7_A 226 FAILT----ILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVY 301 (429)
T ss_dssp HHHHH----HTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHHHHHHHHHHHHHHHTCCCEEECHHHHHHHHHHTBC
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhcCCCCcchHHHhHHHHHhcCCc
Confidence 33333 35567788889988888887777654 46799999999999999999999999988888999999999
Q ss_pred cchHHHHHHHHHHHHHHH--hhHHHHhhhHHHHHHHHHHHhhccCCHHHHHHH--hcCChh---hHHHHHHHHH
Q 010128 415 TVVSNIVMAITVLLSLEL--FTSLLYYTPIAILASIILSALPGLIDINEAINI--YKVDKL---DFLACIGAFL 481 (517)
Q Consensus 415 T~ls~iv~a~~~ll~l~~--l~~l~~~iP~~vLaaili~~~~~li~~~~~~~l--~k~~~~---d~~i~~~~~~ 481 (517)
||++.+++|++++++.++ ++++++.||.+++||+.++ .++++....++.+ .|+|.. +..+..+++.
T Consensus 302 sr~~~~~ag~~lillgl~pk~~al~~~IP~~vlgg~~l~-lfg~i~~~Gi~~l~~~~v~~~~~rn~~i~~~~l~ 374 (429)
T 3qe7_A 302 STWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLL-LYGVIGASGIRVLIESKVDYNKAQNLILTSVILI 374 (429)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHHH-HHHHHHHHHHHHHHHTTSCTTSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHH
Confidence 999999999998877654 6789999999999997765 8999999999998 788753 4444444333
No 2
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=75.11 E-value=77 Score=32.35 Aligned_cols=127 Identities=15% Similarity=0.095 Sum_probs=70.4
Q ss_pred CCCchHHHHHhHHHHHhhhccCcc--C-cc-cchh----hHHHHhhCCCcch-HHHHHHHHHHHHHHHh-----hHHHHh
Q 010128 374 LDGNKEMVAMGFMNIVGSLTSCYV--A-TG-SFSR----TAVNFSAGCQTVV-SNIVMAITVLLSLELF-----TSLLYY 439 (517)
Q Consensus 374 ~d~nqEL~a~GiaNi~~~lfg~~p--~-~~-s~sr----S~v~~~~G~~T~l-s~iv~a~~~ll~l~~l-----~~l~~~ 439 (517)
.|++..+++-|++.++=+++++.+ . .| ++.- +.+.. .|-..-+ +.+++|++.+++.+++ ..+.++
T Consensus 41 l~~~~~l~~agi~Tllq~~~~~~~lP~~~G~sfafi~~~~~i~~-~g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~ 119 (429)
T 3qe7_A 41 INPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLLP-LGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVL 119 (429)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTCCCCCEEECGGGHHHHHHHGG-GCHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCCeEecChHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 467789999999999988875433 3 11 1222 11111 2222222 3333444444444332 258899
Q ss_pred hhHHHHHHHHHHHhhccCCHHHHHHHh-------cCChhhHHHHHHHHHHHHHH-----------hHHHHHHHHHHHHHH
Q 010128 440 TPIAILASIILSALPGLIDINEAINIY-------KVDKLDFLACIGAFLGVLFA-----------SVEIGLLAAVIFLCK 501 (517)
Q Consensus 440 iP~~vLaaili~~~~~li~~~~~~~l~-------k~~~~d~~i~~~~~~~~~~~-----------~~~~Gi~~Gv~~s~~ 501 (517)
+|..+.|.++...++.+.... ++..- ..+..+..+...+++.+++. .+..|+.+|.+++..
T Consensus 120 ~PpvviG~~i~~IGl~l~~~~-~~~~~~~~~~~~~~~~~~~~la~~tl~iii~~~~~~kg~~~~~aiLigivvg~~~a~~ 198 (429)
T 3qe7_A 120 FPPAAMGAIVAVIGLELAGVA-AGMAGLLPAEGQTPDSKTIIISITTLAVTVLGSVLFRGFLAIIPILIGVLVGYALSFA 198 (429)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH-HHHHTSSCBTTBCCCHHHHHHHHHHHHHHHHHHHSSSTTTTTHHHHHHHHHHHHHHHH
T ss_pred CCCeeeHHHHHHHHHHHHHHH-HHhccccCCCCccccHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHH
Confidence 999999999998888776321 11111 12234555666666665553 455666666555554
Q ss_pred H
Q 010128 502 K 502 (517)
Q Consensus 502 ~ 502 (517)
.
T Consensus 199 ~ 199 (429)
T 3qe7_A 199 M 199 (429)
T ss_dssp H
T ss_pred h
Confidence 3
No 3
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=37.06 E-value=18 Score=21.58 Aligned_cols=19 Identities=21% Similarity=0.548 Sum_probs=14.4
Q ss_pred hhHHhhhhhHHHHhccCCC
Q 010128 128 GLYTSVIPPLIYALMGSSR 146 (517)
Q Consensus 128 gL~s~~i~~liyalfGss~ 146 (517)
.+.++.+.+++|++|++.|
T Consensus 6 ~i~s~ai~Gi~f~lf~gQP 24 (26)
T 1bts_A 6 LLISTAVQGILFALLGAXX 24 (26)
T ss_dssp HHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 4678888999999998865
No 4
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=8.40 E-value=7.1e+02 Score=25.80 Aligned_cols=58 Identities=9% Similarity=-0.125 Sum_probs=39.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcCCCchHHHHHhHHHHHhhhccCccCc
Q 010128 338 GPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSCYVAT 399 (517)
Q Consensus 338 ~~~~~~~~~~~~~i~iv~~~~~~~~~~~~~~~~~~~~d~nqEL~a~GiaNi~~~lfg~~p~~ 399 (517)
++.+.++... ++.++--..+..-+++.-.+++-|.-|+-......|..-+++.|+..-
T Consensus 241 ~~vw~~A~gQ----~FFSLslG~G~~ity~SY~~~~~n~~~~a~~v~~~n~~~sllaG~~IF 298 (519)
T 2a65_A 241 PGVWIAAVGQ----IFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSIS 298 (519)
T ss_dssp HHHHHHHHHH----HHHHHTTTSSHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHH----HHHHhHHHHhHHhhhhcccCCCcChHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4445555544 333333333445566777788889999999999999999998876543
No 5
>1jb0_L Photosystem 1 reaction centre subunit XI; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.31.1.1 PDB: 3pcq_L*
Probab=4.98 E-value=4.8e+02 Score=22.34 Aligned_cols=38 Identities=26% Similarity=0.435 Sum_probs=28.6
Q ss_pred hhhhHHhhccHhHHHHHHHHHHHHHHHHhhhhhhCcccc
Q 010128 199 RLGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHF 237 (517)
Q Consensus 199 rlg~l~~fip~pVi~Gf~~gigi~I~~~ql~~~~G~~~~ 237 (517)
++|-+.+ -....+.|+++++|+.++.+-.=.+.|...+
T Consensus 64 ~lGPLRn-te~a~laGllsaiglv~IlT~~LsiYg~~~f 101 (154)
T 1jb0_L 64 KLGPLRD-SDVANLGGLISGIALILVATACLAAYGLVSF 101 (154)
T ss_dssp HHSTTTT-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hcccCcC-cchHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 4566655 5678899999999999998877666666543
No 6
>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B
Probab=4.82 E-value=9.1e+02 Score=16.88 Aligned_cols=11 Identities=27% Similarity=0.295 Sum_probs=5.9
Q ss_pred CChhhHHHHHH
Q 010128 468 VDKLDFLACIG 478 (517)
Q Consensus 468 ~~~~d~~i~~~ 478 (517)
-++.|+...+-
T Consensus 27 p~~~e~~~v~~ 37 (65)
T 3bo0_B 27 PTKDEYLAVAK 37 (65)
T ss_dssp TCTTHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 33478774433
No 7
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=4.78 E-value=9.2e+02 Score=18.23 Aligned_cols=34 Identities=15% Similarity=0.325 Sum_probs=22.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccHhH
Q 010128 172 ADPVAYRKLVFTVTFFAGVFQSVFGLFRLGFLVDFLSHAA 211 (517)
Q Consensus 172 ~~~~~~~~~~~~~~~l~Gv~~~llg~lrlg~l~~fip~pV 211 (517)
.|.++|. ..+-.+|+-++++|+. |++++++-.|+
T Consensus 42 Pdr~Ef~----~iak~t~iG~~imG~I--GfiIkLI~iPI 75 (80)
T 2ww9_B 42 PDLKEYT----KIVKAVGIGFIAVGII--GYAIKLIHIPI 75 (80)
T ss_dssp CCHHHHH----HHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred CCHHHHH----HHHHHHHHHHHHHHHH--HHHHHHHHHHh
Confidence 3444554 3566788888888885 78877665553
No 8
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=4.14 E-value=9.2e+02 Score=15.99 Aligned_cols=9 Identities=0% Similarity=-0.485 Sum_probs=3.6
Q ss_pred HHHHhhcCC
Q 010128 501 KKIFFPLEG 509 (517)
Q Consensus 501 ~~~l~~~~~ 509 (517)
.+++.|+++
T Consensus 31 ~~~~RRRr~ 39 (44)
T 2l2t_A 31 AVYVRRKSI 39 (44)
T ss_dssp HHHHHTTCS
T ss_pred HHHhhhhhh
Confidence 344444433
No 9
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=4.13 E-value=8.4e+02 Score=15.50 Aligned_cols=10 Identities=40% Similarity=0.561 Sum_probs=4.9
Q ss_pred hHHHHHHHHH
Q 010128 487 SVEIGLLAAV 496 (517)
Q Consensus 487 ~~~~Gi~~Gv 496 (517)
|+.+|..+|+
T Consensus 15 GiVvG~v~gv 24 (38)
T 2k1k_A 15 AVIFGLLLGA 24 (38)
T ss_dssp HHHHHHHHHH
T ss_pred eeehHHHHHH
Confidence 4445555443
No 10
>1dj7_A Ferredoxin thioredoxin reductase: catalytic chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: g.36.1.1 PDB: 2pu9_A 2pvo_A 2puo_A 2puk_A 2pvg_A 2pvd_A
Probab=3.90 E-value=6.1e+02 Score=20.71 Aligned_cols=21 Identities=10% Similarity=0.121 Sum_probs=16.9
Q ss_pred HHHhhhhcCCcCCCchHHHHH
Q 010128 363 GRSFASIKGYHLDGNKEMVAM 383 (517)
Q Consensus 363 ~~~~~~~~~~~~d~nqEL~a~ 383 (517)
.+.++++.|+..++|+|+...
T Consensus 18 ~ek~ae~~G~~~NpD~evt~~ 38 (117)
T 1dj7_A 18 AEQYAKRTDTYFCSDLSVTAV 38 (117)
T ss_dssp HHHHHHHTTCBCBSSHHHHHH
T ss_pred HHHHHHHhCCEECCCHHHHHH
Confidence 455688999999999998543
Done!