Query 010128
Match_columns 517
No_of_seqs 271 out of 1824
Neff 7.9
Searched_HMMs 13730
Date Mon Mar 25 20:31:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010128.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010128hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74e1 f.23.24.1 (E:1-32) Pet 44.1 21 0.0015 19.9 4.2 18 483-500 9-26 (32)
2 d1rh5c_ f.23.29.1 (C:) Sec-bet 11.0 1.1E+02 0.0077 16.9 2.7 24 95-118 7-30 (32)
3 d2a65a1 f.54.1.1 (A:5-513) Na( 5.6 7.2E+02 0.053 22.7 8.5 54 337-394 236-289 (509)
4 d1q90g_ f.23.26.1 (G:) PetG su 3.7 3.8E+02 0.028 14.6 3.6 23 417-439 6-29 (30)
5 d1q79a1 a.160.1.1 (A:215-364) 3.5 1.7E+02 0.012 23.1 1.2 18 212-229 26-43 (150)
6 d1jb0l_ f.31.1.1 (L:) Photosys 3.4 3.6E+02 0.026 20.9 3.2 43 193-236 54-97 (151)
7 d2q66a1 a.160.1.1 (A:202-351) 3.4 1.6E+02 0.012 23.3 0.9 19 212-230 26-44 (150)
8 d1tlqa_ a.195.1.1 (A:) Hypothe 3.0 2.6E+02 0.019 22.2 1.8 25 84-108 123-149 (161)
9 d2pu9a1 g.36.1.1 (A:8-115) Fer 2.9 3E+02 0.022 20.3 2.1 22 362-383 10-31 (108)
10 d1u5ta1 a.4.5.54 (A:20-164) Va 2.9 3.3E+02 0.024 21.2 2.4 21 363-383 24-44 (145)
No 1
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=44.13 E-value=21 Score=19.93 Aligned_cols=18 Identities=22% Similarity=0.587 Sum_probs=10.8
Q ss_pred HHHHhHHHHHHHHHHHHH
Q 010128 483 VLFASVEIGLLAAVIFLC 500 (517)
Q Consensus 483 ~~~~~~~~Gi~~Gv~~s~ 500 (517)
.+|..+..|+++|+.+++
T Consensus 9 ivfialffgiavgiifai 26 (32)
T d2e74e1 9 IVFIALFFGIAVGIIFAI 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhheeeE
Confidence 344555567777776654
No 2
>d1rh5c_ f.23.29.1 (C:) Sec-beta subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=11.04 E-value=1.1e+02 Score=16.92 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=18.9
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHH
Q 010128 95 KFKSDLMAGLTLASLSIPQSIGYA 118 (517)
Q Consensus 95 ~l~~Di~aGltv~~~~iPq~iaya 118 (517)
..+.+-.-|+|++.+.+-..+.|+
T Consensus 7 rvkpehvigvtvafviieailtyg 30 (32)
T d1rh5c_ 7 RVKPEHVIGVTVAFVIIEAILTYG 30 (32)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred eeccceEEEEEEehhhHHHHHhhc
Confidence 356777889999999888777774
No 3
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=5.64 E-value=7.2e+02 Score=22.69 Aligned_cols=54 Identities=9% Similarity=-0.095 Sum_probs=32.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcCCCchHHHHHhHHHHHhhhcc
Q 010128 337 TGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTS 394 (517)
Q Consensus 337 ~~~~~~~~~~~~~~i~iv~~~~~~~~~~~~~~~~~~~~d~nqEL~a~GiaNi~~~lfg 394 (517)
+.+.+.++... ++.++.-..+..-+++..++++.|.-|+-....+.|...++..
T Consensus 236 ~~~vW~~A~~Q----~ffSlgiG~G~~i~~~Sy~~~~~n~~rda~~v~~~~~~~si~~ 289 (509)
T d2a65a1 236 DPGVWIAAVGQ----IFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVIL 289 (509)
T ss_dssp CHHHHHHHHHH----HHHHHTTTSSHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHH----HhhhhcccCCceeeehhhccchhhhcccceEEEecccceeecc
Confidence 34455555444 2333333333344566677777788899888888887766543
No 4
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.68 E-value=3.8e+02 Score=14.62 Aligned_cols=23 Identities=26% Similarity=0.441 Sum_probs=9.8
Q ss_pred hHHHHHHHH-HHHHHHHhhHHHHh
Q 010128 417 VSNIVMAIT-VLLSLELFTSLLYY 439 (517)
Q Consensus 417 ls~iv~a~~-~ll~l~~l~~l~~~ 439 (517)
++|++.|++ +-+..+|.+.++.|
T Consensus 6 l~GivlGlipiTl~Glfv~AylQY 29 (30)
T d1q90g_ 6 LCGIVLGLVPVTIAGLFVTAYLQY 29 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHhhHHHHHHHHHHHHHHHh
Confidence 445555443 22333444444443
No 5
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.49 E-value=1.7e+02 Score=23.14 Aligned_cols=18 Identities=22% Similarity=0.481 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 010128 212 IVGFMAGAAIVIGLQQLK 229 (517)
Q Consensus 212 i~Gf~~gigi~I~~~ql~ 229 (517)
+-||.+|+.+.|++.-+=
T Consensus 26 ~~GflGGI~waILvArvC 43 (150)
T d1q79a1 26 ILGFLGGVSWAMLVARTC 43 (150)
T ss_dssp TTTSBCHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHH
Confidence 458888999998877543
No 6
>d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI, PsaL {Synechococcus elongatus [TaxId: 32046]}
Probab=3.44 E-value=3.6e+02 Score=20.94 Aligned_cols=43 Identities=23% Similarity=0.392 Sum_probs=30.5
Q ss_pred HHHHhh-hhhhHHhhccHhHHHHHHHHHHHHHHHHhhhhhhCccc
Q 010128 193 SVFGLF-RLGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISH 236 (517)
Q Consensus 193 ~llg~l-rlg~l~~fip~pVi~Gf~~gigi~I~~~ql~~~~G~~~ 236 (517)
++.|.+ ++|-+.+ -+...+.|+++++|+.++..-.=.+.|...
T Consensus 54 fL~GPF~~lGPLRn-t~~a~~aGllsaiglv~Ilt~~L~lYg~~s 97 (151)
T d1jb0l_ 54 FLIGPWVKLGPLRD-SDVANLGGLISGIALILVATACLAAYGLVS 97 (151)
T ss_dssp HHTHHHHHHSTTTT-STTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeechhhhhcCCcC-chHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 344433 4566554 677889999999999999887666666543
No 7
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.36 E-value=1.6e+02 Score=23.30 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 010128 212 IVGFMAGAAIVIGLQQLKG 230 (517)
Q Consensus 212 i~Gf~~gigi~I~~~ql~~ 230 (517)
+-||.+|+.+.|+++-+=.
T Consensus 26 ~~GylGGI~waILvArvCq 44 (150)
T d2q66a1 26 IFGFPGGVAWAMLVARICQ 44 (150)
T ss_dssp GGTSCCHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHH
Confidence 4688999999998885443
No 8
>d1tlqa_ a.195.1.1 (A:) Hypothetical protein YpjQ {Bacillus subtilis [TaxId: 1423]}
Probab=2.95 E-value=2.6e+02 Score=22.22 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=18.0
Q ss_pred cccccccCChh--hhHhhHHHHHHHHH
Q 010128 84 ILNWGRNYKAS--KFKSDLMAGLTLAS 108 (517)
Q Consensus 84 ~~~wl~~y~~~--~l~~Di~aGltv~~ 108 (517)
+++|+.+.+.. .+..|++||+..++
T Consensus 123 ~i~~ld~~~~g~gv~lDDivagi~A~~ 149 (161)
T d1tlqa_ 123 IIKELDESPDGIHTFLDDIVAALAAAA 149 (161)
T ss_dssp HHHHTSSSCSCCCTTHHHHHHHHHHHH
T ss_pred hHHHHhhcCCCcceeHHHHHHHHHHHH
Confidence 35666655433 48999999998876
No 9
>d2pu9a1 g.36.1.1 (A:8-115) Ferredoxin thioredoxin reductase (FTR), catalytic beta chain {Synechocystis sp. [TaxId: 1143]}
Probab=2.91 E-value=3e+02 Score=20.26 Aligned_cols=22 Identities=9% Similarity=0.117 Sum_probs=17.6
Q ss_pred HHHHhhhhcCCcCCCchHHHHH
Q 010128 362 VGRSFASIKGYHLDGNKEMVAM 383 (517)
Q Consensus 362 ~~~~~~~~~~~~~d~nqEL~a~ 383 (517)
-++.+++++|+..++|+|....
T Consensus 10 f~e~ya~~~G~~~npD~~v~~~ 31 (108)
T d2pu9a1 10 FAEQYAKRTDTYFCSDLSVTAV 31 (108)
T ss_dssp HHHHHHHHHTCBCBSSHHHHHH
T ss_pred HHHHHHHHcCceeCCCHHHHHH
Confidence 3566788999999999988654
No 10
>d1u5ta1 a.4.5.54 (A:20-164) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.90 E-value=3.3e+02 Score=21.20 Aligned_cols=21 Identities=19% Similarity=0.150 Sum_probs=18.0
Q ss_pred HHHhhhhcCCcCCCchHHHHH
Q 010128 363 GRSFASIKGYHLDGNKEMVAM 383 (517)
Q Consensus 363 ~~~~~~~~~~~~d~nqEL~a~ 383 (517)
-+.||++|+.++..|-|+++.
T Consensus 24 L~~FA~kH~~eI~~np~FR~~ 44 (145)
T d1u5ta1 24 LVEFAKKHNSELQASPEFRSK 44 (145)
T ss_dssp HHHHHHHCTTTTTTCHHHHHH
T ss_pred HHHHHHHhHHHhhcCHHHHHH
Confidence 356899999999999999876
Done!