BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010129
(517 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 92/392 (23%), Positives = 149/392 (38%), Gaps = 87/392 (22%)
Query: 98 LNSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDF----N 153
LN+ + ++++G F V +DTGS W+P V+C GQ DF
Sbjct: 7 LNNEHVSYAADITIGSNKQKFNVIVDTGSSDLWVPDASVTCDK---PRPGQSADFCKGKG 63
Query: 154 IYSPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATD 213
IY+P +S+TS + P+ + Y DG+ S G L +D
Sbjct: 64 IYTPKSSTTSQNL------------------GTPFYIGY-GDGSSSQGTLYKDT------ 98
Query: 214 EKQSKSVDSRISFGCGRVQTGSFLD---GAAPNGLFGLGM-------DKTSVPSILANQG 263
+ FG + F D + P G+ G+G D +VP L NQG
Sbjct: 99 ----------VGFGGASITKQVFADITKTSIPQGILGIGYKTNEAAGDYDNVPVTLKNQG 148
Query: 264 LI-PNSFSMCFGS--DGTGRISFGDKGSPGQGETPFSLRQTHP-TYNITITQVSVGGNAV 319
+I N++S+ S TG+I FG + ++ T IT+ + G +
Sbjct: 149 VIAKNAYSLYLNSPNAATGQIIFGGVDKAKYSGSLIAVPVTSDRELRITLNSLKAVGKNI 208
Query: 320 NFEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEK-----------RETSTSDLPFEYC 368
N + DSGT+ TYL I + F + K + + T D F+
Sbjct: 209 NGNIDVLLDSGTTITYLQQDVAQDIIDAFQAELKSDGQGHTFYVTDCQTSGTVDFNFDNN 268
Query: 369 YVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQN 428
+S + F P L+ G P+ PK C ++ + NI+G N
Sbjct: 269 AKISVPASEFTAP---LSYANGQPY------------PK-----CQLLLGISDANILGDN 308
Query: 429 FMTGYNIVFDREKNVLGWKASDCYGVNNSSAL 460
F+ +V+D + + + +N +AL
Sbjct: 309 FLRSAYLVYDLDDDKISLAQVKYTSASNIAAL 340
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 89/360 (24%), Positives = 136/360 (37%), Gaps = 74/360 (20%)
Query: 105 HYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSS 164
+ ++++VG V +DTGS W+P VSC +GQ D N + + S
Sbjct: 14 YASDITVGSNKQKLTVVIDTGSSDLWVPDSQVSC------QAGQGQDPNFCKNEGTYSPS 67
Query: 165 KVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRI 224
+ L N P+ + Y DGT S G +D I
Sbjct: 68 SSSSSQNL------------NSPFSIEY-GDGTTSQGTWYKDT----------------I 98
Query: 225 SFGCGRVQTGSFLD---GAAPNGLFGLGM-------DKTSVPSILANQGLI-PNSFSMCF 273
FG + F D + G+ G+G + +VP L NQG+I N++S+
Sbjct: 99 GFGGISITKQQFADVTSTSVDQGILGIGYKTHEAEGNYDNVPVTLKNQGIISKNAYSLYL 158
Query: 274 GSDG--TGRISFGDKGSPGQGETPFSLRQTHPT-YNITITQVSVGGNAVNFEFSAIFDSG 330
S +G+I FG + T +L T I + V V G ++N + + DSG
Sbjct: 159 NSRQATSGQIIFGGVDNAKYSGTLIALPVTSDNELRIHLNTVKVAGQSINADVDVLLDSG 218
Query: 331 TSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGG 390
T+ TYL Q+ FN +ET N F NL+
Sbjct: 219 TTITYLQQGVADQVISAFNG-----QET------------YDANGNLFYLVDCNLSGSVD 261
Query: 391 GPFFVNDPIVIVSS--------EPKGLYLYCLGVVKSDNVNIIGQNFMTGYNIVFDREKN 442
F N I + +S E +Y C + + + NI+G NF+ IV+D + N
Sbjct: 262 FAFDKNAKISVPASEFTAPLYTEDGQVYDQCQLLFGTSDYNILGDNFLRSAYIVYDLDDN 321
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 116/287 (40%), Gaps = 43/287 (14%)
Query: 200 TGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSI- 258
TGF+ ED++ + S V+ F FL G NG+ GL + PS
Sbjct: 78 TGFVGEDLVTIPKGFNTSFLVNIATIFESENF----FLPGIKWNGILGLAYATLAKPSSS 133
Query: 259 -------LANQGLIPNSFSMCF----------GSDGTGRISFGDKGSPGQGETPFSLRQT 301
L Q IPN FSM G++G + G + S +G+ ++ +
Sbjct: 134 LETFFDSLVTQANIPNVFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYKGDIWYTPIKE 193
Query: 302 HPTYNITITQVSVGGNAVNFEF------SAIFDSGTSFTYLNDPAYTQISETF--NSLAK 353
Y I I ++ +GG ++N + AI DSGT+ L + + E SL
Sbjct: 194 EWYYQIEILKLEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFDAVVEAVARASLIP 253
Query: 354 EKRE--TSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGP-----FFVNDPIVIVSSEP 406
E + + S L C+ S ++ +P +++ ++ + + I
Sbjct: 254 EFSDGFWTGSQLA---CWTNSETPWSY-FPKISIYLRDENSSRSFRITILPQLYIQPMMG 309
Query: 407 KGLYLYC--LGVVKSDNVNIIGQNFMTGYNIVFDREKNVLGWKASDC 451
GL C G+ S N +IG M G+ ++FDR + +G+ AS C
Sbjct: 310 AGLNYECYRFGISPSTNALVIGATVMEGFYVIFDRAQKRVGFAASPC 356
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 87/365 (23%), Positives = 135/365 (36%), Gaps = 82/365 (22%)
Query: 105 HYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDF----NIYSPNTS 160
+ +++VG V +DTGS W+P V C + S Q DF Y P+ S
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQV---TYSDQTADFCKQKGTYDPSGS 70
Query: 161 STSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSV 220
S S + N P+++ Y DG+ S G L +D
Sbjct: 71 SASQDL------------------NTPFKIGY-GDGSSSQGTLYKDT------------- 98
Query: 221 DSRISFGCGRVQTGSFLD---GAAPNGLFGLGMDKT-------SVPSILANQGLI-PNSF 269
+ FG ++ D + G+ G+G +VP L QG+I N++
Sbjct: 99 ---VGFGGVSIKNQVLADVDSTSIDQGILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNAY 155
Query: 270 SMCFGS--DGTGRISFGDKGSPGQGETPFSLRQTHP-TYNITITQVSVGGNAVNFE-FSA 325
S+ S TG+I FG + + +L T I++ V V G +N +
Sbjct: 156 SLYLNSPDAATGQIIFGGVDNAKYSGSLIALPVTSDRELRISLGSVEVSGKTINTDNVDV 215
Query: 326 IFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNL 385
+ DSGT+ TYL QI + FN + N +F NL
Sbjct: 216 LLDSGTTITYLQQDLADQIIKAFNGKLTQ-----------------DSNGNSFYEVDCNL 258
Query: 386 TMKGGGPFFVNDPIVIVSSEPKGL--------YLYCLGVVKSDNVNIIGQNFMTGYNIVF 437
+ F N I + +SE Y C + ++ NI+G NF+ IV+
Sbjct: 259 SGDVVFNFSKNAKISVPASEFAASLQGDDGQPYDKCQLLFDVNDANILGDNFLRSAYIVY 318
Query: 438 DREKN 442
D + N
Sbjct: 319 DLDDN 323
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 85/364 (23%), Positives = 135/364 (37%), Gaps = 76/364 (20%)
Query: 105 HYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDF----NIYSPNTS 160
+ +++VG V +DTGS W+P + C + S Q DF Y P+ S
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNIDCQV---TYSDQTADFCKQKGTYDPSGS 70
Query: 161 STSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSV 220
S S + N P+ + Y DG+ S G L +D
Sbjct: 71 SASQDL------------------NTPFSIGY-GDGSSSQGTLYKDT------------- 98
Query: 221 DSRISFGCGRVQTGSFLD---GAAPNGLFGLGMDKT-------SVPSILANQGLI-PNSF 269
+ FG ++ D + G+ G+G +VP L QG+I N++
Sbjct: 99 ---VGFGGVSIKNQVLADVDSTSIDQGILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNAY 155
Query: 270 SMCFGS--DGTGRISFGDKGSPGQGETPFSLRQTHP-TYNITITQVSVGGNAVNFE-FSA 325
S+ S TG+I FG + + +L T I++ V V G +N +
Sbjct: 156 SLYLNSPDSATGQIIFGGVDNAKYSGSLIALPVTSDRELRISLGSVEVSGKTINTDNVDV 215
Query: 326 IFDSGTSFTYLNDPAYTQISETFN-SLAKEKRETS----TSDLPFEYCYVLSPNQTNFEY 380
+ DSGT+ TYL QI + FN L ++ S +L + + S N
Sbjct: 216 LLDSGTTITYLQQDLADQIIKAFNGKLTQDSNGNSFYEVDCNLSGDVVFNFSKN-AKISV 274
Query: 381 PVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFMTGYNIVFDRE 440
P + G +P Y C + + NI+G NF+ IV+D +
Sbjct: 275 PASDFAASTQGD----------DGQP---YDKCQLLFDVNKANILGDNFLRSAYIVYDLD 321
Query: 441 KNVL 444
N +
Sbjct: 322 DNEI 325
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
pdb|1LS5|B Chain B, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
Length = 328
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 92/374 (24%), Positives = 143/374 (38%), Gaps = 68/374 (18%)
Query: 93 NDTYRLNSLG-FLHYTNVSVGQPALSFIVALDTGSDLFWLP---CDCVSCVHGLNSSSGQ 148
ND+ L+ + + Y +G F+ DTGS W+P CD + C S+
Sbjct: 3 NDSIELDDVANLMFYGEGQIGTNKQPFMFIFDTGSANLWVPSVNCDSIGC------STKH 56
Query: 149 VIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVL 208
+ D +S S + T E+ S GS GT+ G+ +DV+
Sbjct: 57 LYD--------ASASKSYEKDGTKVEI-----SYGS-----------GTVR-GYFSKDVI 91
Query: 209 HLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSI------LANQ 262
L K ++ + + +GS DG + GLG S+ SI L Q
Sbjct: 92 SLGDLSLPYKFIEVTDADDLEPIYSGSEFDG-----ILGLGWKDLSIGSIDPVVVELKKQ 146
Query: 263 GLIPN---SFSMCFGSDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAV 319
I N +F + G ++ G S E P + + + I G V
Sbjct: 147 NKIDNALFTFYLPVHDKHVGYLTIGGIESDFY-EGPLTYEKLNHDLYWQIDLDIHFGKYV 205
Query: 320 NFEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFE 379
+ +A+ DSGTS I+ + L K R+ + +PF YV + + N +
Sbjct: 206 MQKANAVVDSGTS----------TITAPTSFLNKFFRDMNVIKVPFLPLYVTTCD--NDD 253
Query: 380 YPVVNLTMKGGG----PFFVNDPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFMTGYNI 435
P + + P F DP+ + +P LY L V DN I+G FM Y
Sbjct: 254 LPTLEFHSRNNKYTLEPEFYMDPLSDI--DPALCMLYILPVDIDDNTFILGDPFMRKYFT 311
Query: 436 VFDREKNVLGWKAS 449
VFD EK +G+ +
Sbjct: 312 VFDYEKESVGFAVA 325
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 86/235 (36%), Gaps = 34/235 (14%)
Query: 243 NGLFGLGMDKTSVPSILANQGLIPNSFSMCFGSDGTGRISFGDKGSP------GQGETPF 296
G+ GL ++PS +A+ +PN F +C + G G FG P TP
Sbjct: 140 TGVAGLAGSGLALPSQVASAQKVPNKFLLCLPTGGPGVAIFGGGPLPWPQFTQSMDYTPL 199
Query: 297 SLRQTHPTYNITITQVSVGGNAVNFEFSAIFDSGT------SFTYLNDPAYTQISETF-N 349
+ P + I+ + V V A+ G + L Y + + F
Sbjct: 200 VAKGGSPAHYISARSIKVENTRVPISERALATGGVMLSTRLPYVLLRRDVYRPLVDAFTK 259
Query: 350 SLAKEKRETS------TSDLPFEYCY---VLSPNQTNFEYPVVNLTMKGGGPFFVNDPIV 400
+LA + + PFE CY L N + P V L + GG + +
Sbjct: 260 ALAAQPANGAPVARAVKPVAPFELCYDTKTLGNNPGGYWVPNVLLELDGGSDWAMTGKNS 319
Query: 401 IVSSEPKGLYLYCLGVVKSDNVN---------IIGQNFMTGYNIVFDREKNVLGW 446
+V +P C+ V+ V+ I+G M + + FD EK LG+
Sbjct: 320 MVDVKPG---TACVAFVEMKGVDAGDGSAPAVILGGAQMEDFVLDFDMEKKRLGF 371
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 94/414 (22%), Positives = 155/414 (37%), Gaps = 112/414 (27%)
Query: 104 LHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTS 163
LH+ N+ P + V +D + W+ C+ SS +
Sbjct: 22 LHWANLQKRTPLMQVPVLVDLNGNHLWVNCE----------------------QQYSSKT 59
Query: 164 SKVP-CNSTLCELQ--KQCPSAGSNCPYQVR----YLSDGTMST---------GFLVEDV 207
+ P C+ST C QC S CP R + G MST G L EDV
Sbjct: 60 YQAPFCHSTQCSRANTHQCLS----CPAASRPGCHKNTCGLMSTNPITQQTGLGELGEDV 115
Query: 208 LHLATDEKQSKSVDSRIS-----FGCGRVQTGSFL--DGAAPN--GLFGLGMDKTSVPSI 258
L + + ++ + ++ F C SFL G N G+ GLG S+P+
Sbjct: 116 LAIHATQGSTQQLGPLVTVPQFLFSCAP----SFLVQKGLPRNTQGVAGLGHAPISLPNQ 171
Query: 259 LANQGLIPNSFSMCFGSDGT--GRISFGDKGSPGQGETPFSLRQ---------------- 300
LA+ + F+ C T G I FGD P ++RQ
Sbjct: 172 LASHFGLQRQFTTCLSRYPTSKGAIIFGD--------APNNMRQFQNQDIFHDLAFTPLT 223
Query: 301 --THPTYNITITQVSVGGNAVNFEFSAI-------------FDSGTSFTYLNDPAYTQIS 345
YN+ + + + ++V F + I + T L Y +
Sbjct: 224 ITLQGEYNVRVNSIRINQHSV-FPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFT 282
Query: 346 ETF-NSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTM-KGGGPFF-VNDPIVIV 402
+ F L K+ + S + PF C+ + N+ N YP V+L M K GP + ++ ++V
Sbjct: 283 QVFAQQLPKQAQVKSVA--PFGLCF--NSNKIN-AYPSVDLVMDKPNGPVWRISGEDLMV 337
Query: 403 SSEPKGLYLYCLGV----VKSDNVNIIGQNFMTGYNIVFDREKNVLGWKASDCY 452
++P + CLGV ++ +G + +VFD ++ +G+ S +
Sbjct: 338 QAQPG---VTCLGVMNGGMQPRAEITLGARQLEENLVVFDLARSRVGFSTSSLH 388
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
pdb|2QZX|B Chain B, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
Length = 342
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 99/256 (38%), Gaps = 53/256 (20%)
Query: 98 LNSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDF----N 153
L++ + +++VG V +DTGS W+P V C+ G DF
Sbjct: 7 LHNEAITYTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKG---DFCKSAG 63
Query: 154 IYSPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATD 213
YSP +S TS + N + ++Y DG+ + G L +D + +
Sbjct: 64 SYSPASSRTSQNL------------------NTRFDIKY-GDGSYAKGKLYKDTVGIG-- 102
Query: 214 EKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLG--------MDKTSVPSILANQGLI 265
V R T +A G+ G+G D ++P L NQG+I
Sbjct: 103 -----GVSVRDQLFANVWST------SARKGILGIGFQSGEATEFDYDNLPISLRNQGII 151
Query: 266 PN-SFSMCFGS--DGTGRISFG--DKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVN 320
++S+ S TG+I FG DK + + + + V+V G V+
Sbjct: 152 GKAAYSLYLNSAEASTGQIIFGGIDKAKYSGSLVDLPI-TSEKKLTVGLRSVNVRGRNVD 210
Query: 321 FEFSAIFDSGTSFTYL 336
+ + DSGT+ +Y
Sbjct: 211 ANTNVLLDSGTTISYF 226
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 73/327 (22%), Positives = 118/327 (36%), Gaps = 47/327 (14%)
Query: 164 SKVPCNSTLCELQKQCPSAGSNCP-------------YQVRYLSDGTMSTGFLVEDVLHL 210
+++PC+S C L P+ G P Y +S G + G L +
Sbjct: 46 AEIPCSSPTCLLANAYPAPGCPAPSCGSDKHDKPCTAYPYNPVS-GACAAGSL-SHTRFV 103
Query: 211 ATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNG---LFGLGMDKTSVPSILANQGLIPN 267
A SK V S+++ G S L + P G + GL ++P+ +A+ + N
Sbjct: 104 ANTTDGSKPV-SKVNVGVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVAN 162
Query: 268 SFSMCFGSDGTGRISFGDKGSP------GQGETPFSLRQTHPTYNITITQVSVGGNAVNF 321
F +C + G G FG P TP + P + I+ + VG V
Sbjct: 163 RFLLCLPTGGPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPV 222
Query: 322 EFSAIFDSGT------SFTYLNDPAYTQISETF-NSLAKEKRETS------TSDLPFEYC 368
A+ G + L Y + + F +LA + + + PF C
Sbjct: 223 PEGALATGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVC 282
Query: 369 Y---VLSPNQTNFEYPVVNLTMKGGGPFFV---NDPIVIVSSEPKGLYLYCLGVVKSDN- 421
Y L N + P V L + GG + + N + + ++ GV D
Sbjct: 283 YDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGR 342
Query: 422 --VNIIGQNFMTGYNIVFDREKNVLGW 446
I+G M + + FD EK LG+
Sbjct: 343 APAVILGGAQMEDFVLDFDMEKKRLGF 369
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 99/251 (39%), Gaps = 60/251 (23%)
Query: 105 HYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTS 163
+Y V++G P F + DTGS W+ C +C SGQ Y PN SST
Sbjct: 17 YYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNC------GSGQT----KYDPNQSSTY 66
Query: 164 SKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSR 223
+ + Y DG+ ++G L +D ++L + ++++
Sbjct: 67 QA------------------DGRTWSISY-GDGSSASGILAKDNVNLGGLLIKGQTIE-- 105
Query: 224 ISFGCGRVQTGSFLDGAAPN-GLFGLGMDK-TSVPSI------LANQGLIPNS-FSMCFG 274
+ + SF G PN GL GLG D T+V + L +QGLI F + G
Sbjct: 106 ----LAKREAASFASG--PNDGLLGLGFDTITTVRGVKTPMDNLISQGLISRPIFGVYLG 159
Query: 275 SDGTGRI---------SFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFSA 325
G S KGS T + + + IT+ + +VG + V F
Sbjct: 160 KAKNGGGGEYIFGGYDSTKFKGSL----TTVPIDNSRGWWGITVDRATVGTSTVASSFDG 215
Query: 326 IFDSGTSFTYL 336
I D+GT+ L
Sbjct: 216 ILDTGTTLLIL 226
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 87/354 (24%), Positives = 136/354 (38%), Gaps = 76/354 (21%)
Query: 105 HYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTS 163
+Y V++G P F + DTGS W+ C +C S Q Y PN SST
Sbjct: 17 YYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNC------GSRQT----KYDPNQSSTY 66
Query: 164 SKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSR 223
+ + Y DG+ ++G L +D ++L + ++++
Sbjct: 67 QA------------------DGRTWSISY-GDGSSASGILAKDNVNLGGLLIKGQTIE-- 105
Query: 224 ISFGCGRVQTGSFLDGAAPN-GLFGLGMDK-TSVPSI------LANQGLIPNS-FSMCFG 274
+ + SF G PN GL GLG D T+V + L +QGLI F + G
Sbjct: 106 ----LAKREAASFASG--PNDGLLGLGFDTITTVRGVKTPMDNLISQGLISRPIFGVYLG 159
Query: 275 SDGTGRI---------SFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFSA 325
G S KGS T + + + IT+ + +VG + V F
Sbjct: 160 KAKNGGGGEYIFGGYDSTKFKGSL----TTVPIDNSRGWWGITVDRATVGTSTVASSFDG 215
Query: 326 IFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNL 385
I D+GT+ L + N A R SD + Y +S + + F+ V ++
Sbjct: 216 ILDTGTTLLILPN----------NIAASVARAYGASD-NGDGTYTISCDTSRFKPLVFSI 264
Query: 386 TMKGGGPFFVNDPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFMTGYNIVFDR 439
G F P +V E +G + G D IIG F+ +VF++
Sbjct: 265 N----GASFQVSPDSLVFEEFQGQCIAGFGYGNWD-FAIIGDTFLKNNYVVFNQ 313
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 95/250 (38%), Gaps = 52/250 (20%)
Query: 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP---CDCVSCVHGLNSSSGQVIDFNIY 155
N L ++ + +G PA F V DTGS W+P C ++C + N +
Sbjct: 8 NYLDMEYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTN-----------HNRF 56
Query: 156 SPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEK 215
+P SST Q S + Y G+M TG L D + +
Sbjct: 57 NPEDSST--------------YQSTSETVSITY-----GTGSM-TGILGYDTVQVG---- 92
Query: 216 QSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGM------DKTSVPSILANQGLIPNS- 268
D+ FG + GSFL A +G+ GL T V + NQGL+
Sbjct: 93 --GISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISSSGATPVFDNIWNQGLVSQDL 150
Query: 269 FSMCFGSD---GTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFE--F 323
FS+ +D G+ I G S G + + IT+ +++ G A+
Sbjct: 151 FSVYLSADDQSGSVVIFGGIDSSYYTGSLNWVPVTVEGYWQITVDSITMNGEAIACAEGC 210
Query: 324 SAIFDSGTSF 333
AI D+GTS
Sbjct: 211 QAIVDTGTSL 220
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 84/365 (23%), Positives = 142/365 (38%), Gaps = 80/365 (21%)
Query: 105 HYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLN-SSSGQVIDFNIYSPNTSSTS 163
+ + VSVG V +DTGS FW+ C G++ SSG ++P++SS+
Sbjct: 14 YASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCKSSG------TFTPSSSSSY 67
Query: 164 SKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHL---------ATDE 214
+ + +RY DG+ S G +D + + D
Sbjct: 68 KNL------------------GAAFTIRY-GDGSTSQGTWGKDTVTINGVSITGQQIADV 108
Query: 215 KQSKSVDSRISFGCGRVQTGSFLDGAA----PNGLFGLGMDKTSVPSILANQGLI-PNSF 269
Q+ SVD I G G + D + PN +VP L QG I N++
Sbjct: 109 TQT-SVDQGI-LGIGYTSNEAVYDTSGRQTTPN--------YDNVPVTLKKQGKIRTNAY 158
Query: 270 SMCFGS--DGTGRISFGD-KGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFSAI 326
S+ S TG I FG + G+ + I++ V++ G++ +F A+
Sbjct: 159 SLYLNSPSAETGTIIFGGVDNAKYSGKLVAEQVTSSQALTISLASVNLKGSSFSFGDGAL 218
Query: 327 FDSGTSFTYLNDPAYTQISETFNS-LAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNL 385
DSGT+ TY Q+++ + L + R+ +Y Y + N V N
Sbjct: 219 LDSGTTLTYFPSDFAAQLADKAGARLVQVARD--------QYLYFIDCNTDTSGTTVFN- 269
Query: 386 TMKGGGPFFVNDPIVIVSSEPKGLYLY------CLGVVKSDNVNIIGQNFMTGYNIVFDR 439
F N + V P Y+Y CL ++ + I+G NF+ ++++
Sbjct: 270 --------FGNGAKITV---PNTEYVYQNGDGTCLWGIQPSDDTILGDNFLRHAYLLYNL 318
Query: 440 EKNVL 444
+ N +
Sbjct: 319 DANTI 323
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 98/263 (37%), Gaps = 54/263 (20%)
Query: 91 AGNDTYRLNSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP---CDCVSCVHGLNSSSG 147
G+D N L +YT++++G P +F V LDTGS W+P C ++C
Sbjct: 1 GGHDVPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACF-------- 52
Query: 148 QVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDV 207
++S SS N T +Q S Y+S T+S G L
Sbjct: 53 ------LHSKYDHEASSSYKANGTEFAIQYGTGSLEG-------YISQDTLSIGDLT--- 96
Query: 208 LHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSIL------AN 261
+ + + + ++F G+ +G+ GLG D SV ++
Sbjct: 97 --IPKQDFAEATSEPGLTFAFGKF-----------DGILGLGYDTISVDKVVPPFYNAIQ 143
Query: 262 QGLI-PNSFSMCFG-----SDGTGRISFGD-KGSPGQGETPFSLRQTHPTYNITITQVSV 314
Q L+ F+ G ++ G +FG S +G+ + + + + + +
Sbjct: 144 QDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGL 203
Query: 315 GGNAVNFE-FSAIFDSGTSFTYL 336
G E A D+GTS L
Sbjct: 204 GDEYAELESHGAAIDTGTSLITL 226
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 98/263 (37%), Gaps = 54/263 (20%)
Query: 91 AGNDTYRLNSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP---CDCVSCVHGLNSSSG 147
G+D N L +YT++++G P +F V LDTGS W+P C ++C
Sbjct: 1 GGHDVPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACF-------- 52
Query: 148 QVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDV 207
++S SS N T +Q S Y+S T+S G L
Sbjct: 53 ------LHSKYDHEASSSYKANGTEFAIQYGTGSLEG-------YISQDTLSIGDLT--- 96
Query: 208 LHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSIL------AN 261
+ + + + ++F G+ +G+ GLG D SV ++
Sbjct: 97 --IPKQDFAEATSEPGLTFAFGKF-----------DGILGLGYDTISVDKVVPPFYNAIQ 143
Query: 262 QGLI-PNSFSMCFG-----SDGTGRISFGD-KGSPGQGETPFSLRQTHPTYNITITQVSV 314
Q L+ F+ G ++ G +FG S +G+ + + + + + +
Sbjct: 144 QDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGL 203
Query: 315 GGNAVNFE-FSAIFDSGTSFTYL 336
G E A D+GTS L
Sbjct: 204 GDEYAELESHGAAIDTGTSLITL 226
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 98/263 (37%), Gaps = 54/263 (20%)
Query: 91 AGNDTYRLNSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP---CDCVSCVHGLNSSSG 147
G+D N L +YT++++G P +F V LDTGS W+P C ++C
Sbjct: 1 GGHDVPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACF-------- 52
Query: 148 QVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDV 207
++S SS N T +Q S Y+S T+S G L
Sbjct: 53 ------LHSKYDHEASSSYKANGTEFAIQYGTGSLEG-------YISQDTLSIGDLT--- 96
Query: 208 LHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSIL------AN 261
+ + + + ++F G+ +G+ GLG D SV ++
Sbjct: 97 --IPKQDFAEATSEPGLTFAFGKF-----------DGILGLGYDTISVDKVVPPFYNAIQ 143
Query: 262 QGLI-PNSFSMCFG-----SDGTGRISFGD-KGSPGQGETPFSLRQTHPTYNITITQVSV 314
Q L+ F+ G ++ G +FG S +G+ + + + + + +
Sbjct: 144 QDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGL 203
Query: 315 GGNAVNFE-FSAIFDSGTSFTYL 336
G E A D+GTS L
Sbjct: 204 GDEYAELESHGAAIDTGTSLITL 226
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 95/250 (38%), Gaps = 52/250 (20%)
Query: 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP---CDCVSCVHGLNSSSGQVIDFNIY 155
N L ++ + +G PA F V DTGS W+P C ++C + N +
Sbjct: 8 NYLDMEYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTN-----------HNRF 56
Query: 156 SPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEK 215
+P SST Q S + Y G+M TG L D + +
Sbjct: 57 NPEDSST--------------YQSTSETVSITY-----GTGSM-TGILGYDTVQVG---- 92
Query: 216 QSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGM------DKTSVPSILANQGLIPNS- 268
D+ FG + GSFL A +G+ GL T V + NQGL+
Sbjct: 93 --GISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISSSGATPVFDNIWNQGLVSQDL 150
Query: 269 FSMCFGSD---GTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFE--F 323
FS+ +D G+ I G S G + + IT+ +++ G A+
Sbjct: 151 FSVYLSADDQSGSVVIFGGIDSSYYTGSLNWVPVTVEGYWQITVDSITMNGEAIACAEGC 210
Query: 324 SAIFDSGTSF 333
AI D+GTS
Sbjct: 211 QAIVDTGTSL 220
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 97/250 (38%), Gaps = 52/250 (20%)
Query: 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP---CDCVSCVHGLNSSSGQVIDFNIY 155
N L ++ + +G PA F V DTGS W+P C ++C D N +
Sbjct: 52 NYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACS-----------DHNQF 100
Query: 156 SPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEK 215
+P+ SST +T EL + Y G+M TG L D + +
Sbjct: 101 NPDDSST-----FEATXQEL-------------SITY-GTGSM-TGILGYDTVQVG---- 136
Query: 216 QSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGM------DKTSVPSILANQGLIPNS- 268
D+ FG + GSFL A +G+ GL T V L +QGL+
Sbjct: 137 --GISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDL 194
Query: 269 FSMCFGS-DGTGRISF--GDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFE--F 323
FS+ S D +G + G S G + + IT+ +++ G +
Sbjct: 195 FSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGC 254
Query: 324 SAIFDSGTSF 333
AI D+GTS
Sbjct: 255 QAIVDTGTSL 264
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 97/250 (38%), Gaps = 52/250 (20%)
Query: 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP---CDCVSCVHGLNSSSGQVIDFNIY 155
N L ++ + +G PA F V DTGS W+P C ++C D N +
Sbjct: 52 NYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACS-----------DHNQF 100
Query: 156 SPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEK 215
+P+ SST +T EL + Y G+M TG L D + +
Sbjct: 101 NPDDSST-----FEATSQEL-------------SITY-GTGSM-TGILGYDTVQVG---- 136
Query: 216 QSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGM------DKTSVPSILANQGLIPNS- 268
D+ FG + GSFL A +G+ GL T V L +QGL+
Sbjct: 137 --GISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDL 194
Query: 269 FSMCFGS-DGTGRISF--GDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFE--F 323
FS+ S D +G + G S G + + IT+ +++ G +
Sbjct: 195 FSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGC 254
Query: 324 SAIFDSGTSF 333
AI D+GTS
Sbjct: 255 QAIVDTGTSL 264
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 73/327 (22%), Positives = 117/327 (35%), Gaps = 47/327 (14%)
Query: 164 SKVPCNSTLCELQKQCPSAGSNCP-------------YQVRYLSDGTMSTGFLVEDVLHL 210
+++PC+S C L P+ G P Y +S G + G L +
Sbjct: 46 AEIPCSSPTCLLANAYPAPGCPAPSCGSDKHDKPCTAYPYNPVS-GACAAGSL-SHTRFV 103
Query: 211 ATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNG---LFGLGMDKTSVPSILANQGLIPN 267
A SK V S+++ G S L + P G + GL ++P+ +A+ + N
Sbjct: 104 ANTTDGSKPV-SKVNVGVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVAN 162
Query: 268 SFSMCFGSDGTGRISFGDKGSP------GQGETPFSLRQTHPTYNITITQVSVGGNAVNF 321
F +C + G G FG P TP + P + I+ + VG V
Sbjct: 163 RFLLCLPTGGPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPV 222
Query: 322 EFSAIFDSGT------SFTYLNDPAYTQISETF-NSLAKEKRE------TSTSDLPFEYC 368
A+ G + L Y + + F +LA + + PF C
Sbjct: 223 PEGALATGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVVAVAPFGVC 282
Query: 369 Y---VLSPNQTNFEYPVVNLTMKGGGPFFV---NDPIVIVSSEPKGLYLYCLGVVKSDN- 421
Y L N + P V L + GG + + N + + ++ GV D
Sbjct: 283 YDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGR 342
Query: 422 --VNIIGQNFMTGYNIVFDREKNVLGW 446
I+G M + + FD EK LG+
Sbjct: 343 APAVILGGAQMEDFVLDFDMEKKRLGF 369
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 97/250 (38%), Gaps = 52/250 (20%)
Query: 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP---CDCVSCVHGLNSSSGQVIDFNIY 155
N L ++ + +G PA F V DTGS W+P C ++C D N +
Sbjct: 8 NYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACS-----------DHNQF 56
Query: 156 SPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEK 215
+P+ SST +T EL + Y G+M TG L D + +
Sbjct: 57 NPDDSST-----FEATXQEL-------------SITY-GTGSM-TGILGYDTVQVG---- 92
Query: 216 QSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGM------DKTSVPSILANQGLIPNS- 268
D+ FG + GSFL A +G+ GL T V L +QGL+
Sbjct: 93 --GISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDL 150
Query: 269 FSMCFGS-DGTGRISF--GDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFE--F 323
FS+ S D +G + G S G + + IT+ +++ G +
Sbjct: 151 FSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGC 210
Query: 324 SAIFDSGTSF 333
AI D+GTS
Sbjct: 211 QAIVDTGTSL 220
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 97/250 (38%), Gaps = 52/250 (20%)
Query: 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP---CDCVSCVHGLNSSSGQVIDFNIY 155
N L ++ + +G PA F V DTGS W+P C ++C D N +
Sbjct: 8 NYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACS-----------DHNQF 56
Query: 156 SPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEK 215
+P+ SST +T EL + Y G+M TG L D + +
Sbjct: 57 NPDDSST-----FEATXQEL-------------SITY-GTGSM-TGILGYDTVQVG---- 92
Query: 216 QSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGM------DKTSVPSILANQGLIPNS- 268
D+ FG + GSFL A +G+ GL T V L +QGL+
Sbjct: 93 --GISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDL 150
Query: 269 FSMCFGS-DGTGRISF--GDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFE--F 323
FS+ S D +G + G S G + + IT+ +++ G +
Sbjct: 151 FSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGC 210
Query: 324 SAIFDSGTSF 333
AI D+GTS
Sbjct: 211 QAIVDTGTSL 220
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 96/250 (38%), Gaps = 52/250 (20%)
Query: 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP---CDCVSCVHGLNSSSGQVIDFNIY 155
N L ++ + +G PA F V DTGS W+P C ++C D N +
Sbjct: 8 NYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACS-----------DHNQF 56
Query: 156 SPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEK 215
+P+ SST Q+ + G+ G+M TG L D + +
Sbjct: 57 NPDDSSTFEATS--------QELSITYGT-----------GSM-TGILGYDTVQVG---- 92
Query: 216 QSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGM------DKTSVPSILANQGLIPNS- 268
D+ FG + GSFL A +G+ GL T V L +QGL+
Sbjct: 93 --GISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDL 150
Query: 269 FSMCFGS-DGTGRISF--GDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFE--F 323
FS+ S D +G + G S G + + IT+ +++ G +
Sbjct: 151 FSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGC 210
Query: 324 SAIFDSGTSF 333
AI D+GTS
Sbjct: 211 QAIVDTGTSL 220
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 97/250 (38%), Gaps = 52/250 (20%)
Query: 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP---CDCVSCVHGLNSSSGQVIDFNIY 155
N L ++ + +G PA F V DTGS W+P C ++C D N +
Sbjct: 8 NYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACS-----------DHNQF 56
Query: 156 SPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEK 215
+P+ SST +T EL + Y G+M TG L D + +
Sbjct: 57 NPDDSST-----FEATSQEL-------------SITY-GTGSM-TGILGYDTVQVG---- 92
Query: 216 QSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGM------DKTSVPSILANQGLIPNS- 268
D+ FG + GSFL A +G+ GL T V L +QGL+
Sbjct: 93 --GISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDL 150
Query: 269 FSMCFGS-DGTGRISF--GDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFE--F 323
FS+ S D +G + G S G + + IT+ +++ G +
Sbjct: 151 FSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGC 210
Query: 324 SAIFDSGTSF 333
AI D+GTS
Sbjct: 211 QAIVDTGTSL 220
>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
pdb|2ANL|B Chain B, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
Length = 327
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 82/371 (22%), Positives = 141/371 (38%), Gaps = 62/371 (16%)
Query: 93 NDTYRLNSLG-FLHYTNVSVGQPALSFIVALDTGSDLFWLP---CDCVSCVHGLNSSSGQ 148
ND L+ + + Y VG F++ DTGS W+P C+ + C S+
Sbjct: 3 NDVIELDDVANLMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSIGC------STKH 56
Query: 149 VIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVL 208
+ D SS S + T E+ + GS GT+ GF +D++
Sbjct: 57 LYD--------SSKSKSYEKDGTKVEI-----TYGS-----------GTVR-GFFSKDLV 91
Query: 209 HLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSI------LANQ 262
L K ++ + + T + DG + GLG S+ SI L NQ
Sbjct: 92 TLGYLSLPYKFIEVTDTDDLEPLYTAAEFDG-----ILGLGWKDLSIGSIDPIVVELKNQ 146
Query: 263 GLIPN---SFSMCFGSDGTGRISFGD-KGSPGQGETPFSLRQTHPTYNITITQVSVGGNA 318
I +F + +G ++ G + +GE + + H + V+ G +
Sbjct: 147 NKIDQALFTFYLPVHDKHSGYLTIGGIEEKFYEGELTYE-KLNHDLFWQVDLDVNFGKTS 205
Query: 319 VNFEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNF 378
+ + + I DSGTS T + N K+ LPF + +
Sbjct: 206 ME-KANVIVDSGTS-------TITAPTSFINKFFKDLNVIKVPFLPFYITTCNNKDMPTL 257
Query: 379 EYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFMTGYNIVFD 438
E+ N T +++ +P++ + LY+ + + K N I+G FM Y VFD
Sbjct: 258 EFKSANNTYTLEPEYYM-EPLLDIDDTLCMLYILPVDIDK--NTFILGDPFMRKYFTVFD 314
Query: 439 REKNVLGWKAS 449
+K +G+ +
Sbjct: 315 YDKESIGFAVA 325
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 96/250 (38%), Gaps = 52/250 (20%)
Query: 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP---CDCVSCVHGLNSSSGQVIDFNIY 155
N L ++ + +G PA F V DTGS W+P C ++C D N +
Sbjct: 8 NYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACS-----------DHNQF 56
Query: 156 SPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEK 215
+P+ SST Q+ + G+ G+M TG L D + +
Sbjct: 57 NPDDSSTFEATS--------QELSITYGT-----------GSM-TGILGYDTVQVG---- 92
Query: 216 QSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGM------DKTSVPSILANQGLIPNS- 268
D+ FG + GSFL A +G+ GL T V L +QGL+
Sbjct: 93 --GISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDL 150
Query: 269 FSMCFGS-DGTGRISF--GDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFE--F 323
FS+ S D +G + G S G + + IT+ +++ G +
Sbjct: 151 FSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGC 210
Query: 324 SAIFDSGTSF 333
AI D+GTS
Sbjct: 211 QAIVDTGTSL 220
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1
pdb|3BUF|A Chain A, Bace-1 Complexed With Compound 2
pdb|3BUG|A Chain A, Bace-1 Complexed With Compound 3
pdb|3BUH|A Chain A, Bace-1 Complexed With Compound 4
Length = 409
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 54/261 (20%), Positives = 97/261 (37%), Gaps = 53/261 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F++G+ G+ GL + + P L Q +PN FS+
Sbjct: 125 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA 184
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 185 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 244
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEY-------CYVLSPNQTNFEYP 381
SGT+ L + ++A K +ST P + C+ N +P
Sbjct: 245 SGTTNLRLPKKVFEA------AVASIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-FP 297
Query: 382 VVNLTMKG---GGPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFMT 431
V++L + G F + P+ V++ Y + + +S ++G M
Sbjct: 298 VISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIME 355
Query: 432 GYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 356 GFYVVFDRARKRIGFAVSACH 376
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 375
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 98/249 (39%), Gaps = 43/249 (17%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSMCFGSDGTGRISFGDKG 287
F++G+ G+ GL + + P L Q +PN FS+ G+ I D
Sbjct: 115 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGGGSMIIGGIDH- 173
Query: 288 SPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFDSGTSFTYLNDPAY 341
S G ++ + Y + I +V + G + + +I DSGT T L P
Sbjct: 174 SLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT--TNLRLP-- 229
Query: 342 TQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEYPVVNLTMKG---G 390
+ F + K K +ST P + C+ N +PV++L + G
Sbjct: 230 ---KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-FPVISLYLMGEVTN 285
Query: 391 GPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFMTGYNIVFDREKNV 443
F + P+ V++ Y + + +S ++G M G+ +VFDR +
Sbjct: 286 QSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIMEGFYVVFDRARKR 343
Query: 444 LGWKASDCY 452
+G+ S C+
Sbjct: 344 IGFAVSACH 352
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor
pdb|4DPI|A Chain A, Bace-1 In Complex With Hea-Macrocyclic Inhibitor, Mv078512
Length = 391
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F++G+ G+ GL + + P L Q +PN FS+
Sbjct: 115 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA 174
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 175 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 234
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 235 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 286
Query: 381 PVVNLTMKG---GGPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G F + P+ V++ Y + + +S ++G M
Sbjct: 287 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIM 344
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 345 EGFYVVFDRARKRIGFAVSACH 366
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1FKN|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1M4H|A Chain A, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
pdb|1M4H|B Chain B, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
Length = 391
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F++G+ G+ GL + + P L Q +PN FS+
Sbjct: 115 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA 174
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 175 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 234
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 235 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 286
Query: 381 PVVNLTMKG---GGPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G F + P+ V++ Y + + +S ++G M
Sbjct: 287 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIM 344
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 345 EGFYVVFDRARKRIGFAVSACH 366
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
pdb|4EXG|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
Length = 386
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F++G+ G+ GL + + P L Q +PN FS+
Sbjct: 110 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA 169
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 170 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 229
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 230 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 281
Query: 381 PVVNLTMKG---GGPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G F + P+ V++ Y + + +S ++G M
Sbjct: 282 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIM 339
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 340 EGFYVVFDRARKRIGFAVSACH 361
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1
pdb|3UDJ|A Chain A, Crystal Structure Of Bace With Compound 5
pdb|3UDK|A Chain A, Crystal Structure Of Bace With Compound 6
pdb|3UDM|A Chain A, Crystal Structure Of Bace With Compound 8
pdb|3UDN|A Chain A, Crystal Structure Of Bace With Compound 9
pdb|3UDP|A Chain A, Crystal Structure Of Bace With Compound 12
pdb|3UDQ|A Chain A, Crystal Structure Of Bace With Compound 13
pdb|3UDR|A Chain A, Crystal Structure Of Bace With Compound 14
pdb|3UDY|A Chain A, Crystal Structure Of Bace With Compound 11
pdb|4FM7|A Chain A, Crystal Structure Of Bace With Compound 14g
pdb|4FM8|A Chain A, Crystal Structure Of Bace With Compound 12a
Length = 404
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F++G+ G+ GL + + P L Q +PN FS+
Sbjct: 113 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA 172
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 173 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 232
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 233 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 284
Query: 381 PVVNLTMKG---GGPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G F + P+ V++ Y + + +S ++G M
Sbjct: 285 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIM 342
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 343 EGFYVVFDRARKRIGFAVSACH 364
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|B Chain B, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|C Chain C, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|3IXJ|A Chain A, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|B Chain B, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|C Chain C, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|4GID|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|C Chain C, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|D Chain D, Structure Of Beta-Secretase Complexed With Inhibitor
Length = 388
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F++G+ G+ GL + + P L Q +PN FS+
Sbjct: 112 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA 171
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 172 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 231
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 232 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 283
Query: 381 PVVNLTMKG---GGPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G F + P+ V++ Y + + +S ++G M
Sbjct: 284 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIM 341
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 342 EGFYVVFDRARKRIGFAVSACH 363
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8L|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8V|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
L- L000430,469
pdb|2IRZ|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2IS0|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2PH6|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2OAH|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2P8H|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2NTR|A Chain A, Crystal Structure Of Human Bace-1 Bound To Inhibitor
pdb|2PH8|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2QZK|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
I21
pdb|2ZJM|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(4-Sulfamoyl-Phenoxy)-Acetamide
pdb|3FKT|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Spiropiperdine Iminohydantoin Inhibitor
Length = 405
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F++G+ G+ GL + + P L Q +PN FS+
Sbjct: 129 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA 188
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 189 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 248
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 249 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 300
Query: 381 PVVNLTMKG---GGPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G F + P+ V++ Y + + +S ++G M
Sbjct: 301 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIM 358
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 359 EGFYVVFDRARKRIGFAVSACH 380
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485
pdb|2QK5|B Chain B, Structure Of Bace1 Bound To Sch626485
pdb|2QMD|A Chain A, Structure Of Bace Bound To Sch722924
pdb|2QMD|B Chain B, Structure Of Bace Bound To Sch722924
pdb|2QMF|A Chain A, Structure Of Bace Bound To Sch735310
pdb|2QMF|B Chain B, Structure Of Bace Bound To Sch735310
pdb|2QP8|A Chain A, Structure Of Bace Bound To Sch734723
pdb|2QP8|B Chain B, Structure Of Bace Bound To Sch734723
pdb|2QMG|A Chain A, Structure Of Bace Bound To Sch745966
pdb|2QMG|B Chain B, Structure Of Bace Bound To Sch745966
Length = 395
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F++G+ G+ GL + + P L Q +PN FS+
Sbjct: 118 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA 177
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 178 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 237
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 238 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 289
Query: 381 PVVNLTMKG---GGPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G F + P+ V++ Y + + +S ++G M
Sbjct: 290 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIM 347
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 348 EGFYVVFDRARKRIGFAVSACH 369
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
pdb|4B1E|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 388
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F++G+ G+ GL + + P L Q +PN FS+
Sbjct: 113 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA 172
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 173 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 232
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 233 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 284
Query: 381 PVVNLTMKG---GGPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G F + P+ V++ Y + + +S ++G M
Sbjct: 285 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIM 342
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 343 EGFYVVFDRARKRIGFAVSACH 364
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor (2)
pdb|2IQG|A Chain A, Crystal Structure Of Hydroxyethyl Secondary Amine-Based
Peptidomimetic Inhibitor Of Human Beta-Secretase (Bace)
pdb|3IVH|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|B Chain B, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|C Chain C, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3NSH|A Chain A, Bace-1 In Complex With Eln475957
pdb|3NSH|B Chain B, Bace-1 In Complex With Eln475957
pdb|3NSH|C Chain C, Bace-1 In Complex With Eln475957
pdb|3N4L|A Chain A, Bace-1 In Complex With Eln380842
pdb|3N4L|B Chain B, Bace-1 In Complex With Eln380842
pdb|3N4L|C Chain C, Bace-1 In Complex With Eln380842
Length = 406
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F++G+ G+ GL + + P L Q +PN FS+
Sbjct: 115 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA 174
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 175 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 234
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 235 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 286
Query: 381 PVVNLTMKG---GGPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G F + P+ V++ Y + + +S ++G M
Sbjct: 287 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIM 344
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 345 EGFYVVFDRARKRIGFAVSACH 366
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596
pdb|3CIB|B Chain B, Structure Of Bace Bound To Sch727596
pdb|3CIC|A Chain A, Structure Of Bace Bound To Sch709583
pdb|3CIC|B Chain B, Structure Of Bace Bound To Sch709583
pdb|3CID|A Chain A, Structure Of Bace Bound To Sch726222
pdb|3CID|B Chain B, Structure Of Bace Bound To Sch726222
pdb|4FS4|A Chain A, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
pdb|4FS4|B Chain B, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
Length = 390
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F++G+ G+ GL + + P L Q +PN FS+
Sbjct: 113 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA 172
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 173 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 232
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 233 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 284
Query: 381 PVVNLTMKG---GGPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G F + P+ V++ Y + + +S ++G M
Sbjct: 285 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIM 342
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 343 EGFYVVFDRARKRIGFAVSACH 364
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|B Chain B, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|C Chain C, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
Length = 390
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F++G+ G+ GL + + P L Q +PN FS+
Sbjct: 114 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA 173
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 174 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 233
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 234 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 285
Query: 381 PVVNLTMKG---GGPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G F + P+ V++ Y + + +S ++G M
Sbjct: 286 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIM 343
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 344 EGFYVVFDRARKRIGFAVSACH 365
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With
Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h-
Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide
Length = 412
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F++G+ G+ GL + + P L Q +PN FS+
Sbjct: 113 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA 172
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 173 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 232
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 233 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 284
Query: 381 PVVNLTMKG---GGPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G F + P+ V++ Y + + +S ++G M
Sbjct: 285 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIM 342
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 343 EGFYVVFDRARKRIGFAVSACH 364
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1
pdb|2Q11|B Chain B, Structure Of Bace Complexed To Compound 1
pdb|2Q11|C Chain C, Structure Of Bace Complexed To Compound 1
Length = 388
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 96/262 (36%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F+ G+ G+ GL + + P L Q +PN FS+
Sbjct: 112 FIQGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLQQSEVLA 171
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 172 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 231
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 232 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 283
Query: 381 PVVNLTMKGGG----------PFFVNDPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G P P+ V++ Y + + +S ++G M
Sbjct: 284 PVISLYLMGEVTQQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIM 341
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 342 EGFYVVFDRARKRIGFAVSACH 363
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|B Chain B, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|C Chain C, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|D Chain D, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1XS7|D Chain D, Crystal Structure Of A Cycloamide-Urethane-Derived Novel
Inhibitor Bound To Human Brain Memapsin 2
(Beta-Secretase).
pdb|1XN2|A Chain A, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|B Chain B, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|C Chain C, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|D Chain D, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN3|A Chain A, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|B Chain B, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|C Chain C, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|D Chain D, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|2G94|A Chain A, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|B Chain B, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|C Chain C, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|D Chain D, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2P4J|A Chain A, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|B Chain B, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|C Chain C, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|D Chain D, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2VKM|A Chain A, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|B Chain B, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|C Chain C, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|D Chain D, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|3UFL|A Chain A, Discovery Of Pyrrolidine-Based B-Secretase Inhibitors:
Lead Advancement Through Conformational Design For
Maintenance Of Ligand Binding Efficiency
Length = 389
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F++G+ G+ GL + + P L Q +PN FS+
Sbjct: 113 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA 172
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 173 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 232
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 233 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 284
Query: 381 PVVNLTMKG---GGPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G F + P+ V++ Y + + +S ++G M
Sbjct: 285 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIM 342
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 343 EGFYVVFDRARKRIGFAVSACH 364
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-1-Benzyl-2-Hydroxy-
3-((1,1,
5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2-
Oxopyrrolidin-1-Yl)benzamide
pdb|2VIJ|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(1,2,3,4-Tetrahydro-1-Naphthalenylamino)
Propyl)benzamide
pdb|2VIY|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Pentylsulfonyl)benzamide
pdb|2VIZ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-methyl-2-oxoethyl)amino)-2-hydroxy-1-
(
Phenylmethyl)propyl)-3-(2-oxo-1-pyrrolidinyl)-5-
(propyloxy) Benzamide
pdb|2VJ6|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2VJ7|A Chain A, Human Bace-1 In Complex With 3-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-1-(Phenylmethyl)-3-(((3-(Trifluoromethyl)phenyl)
Methyl)amino)propyl)-5-(2-Oxo-1-Pyrrolidinyl)benzamide
pdb|2VJ9|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-3-(Cyclohexylamino)-
2-Hydroxy-1-(Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-
Oxo- 1-Pyrrolidinyl)benzamide
pdb|2VNM|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino) Propyl)benzamide
pdb|2VNN|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF4|A Chain A, Human Bace-1 In Complex With
6-Ethyl-1-Methyl-N-((1s)-2-Oxo-
1-(Phenylmethyl)-3-(Tetrahydro-2h-Pyran-4-
Ylamino)propyl)-
1,3,4,6-Tetrahydro(1,2)thiazepino(5,4,3-Cd)indole-8-
Carboxamide 2,2-Dioxide
pdb|2WEZ|A Chain A, Human Bace-1 In Complex With
1-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-4-(2-Oxo-1-Pyrrolidinyl)-1h-Indole-6-Carboxamide
pdb|2WF0|A Chain A, Human Bace-1 In Complex With
4-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-8-(2-Oxo-1-Pyrrolidinyl)-6-Quinolinecarboxamide
pdb|2WF1|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl(Methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF2|A Chain A, Human Bace-1 In Complex With
8-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4,7,8-Tetrahydro-1h,6h-(1,2,5)
Thiadiazepino(5,4,3-De)quinoxaline-10-Carboxamide 2,2-
Dioxide
pdb|2WF3|A Chain A, Human Bace-1 In Complex With 6-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-3-(((3-(Methyloxy)phenyl)methyl)amino)-1-(
Phenylmethyl)propyl)-1-Methyl-1,3,4,5-Tetrahydro-2,1-
Benzothiazepine-8-Carboxamide 2,2-Dioxide
pdb|2XFI|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-((Methylsulfonyl)(Phenyl)amino)
Benzamide
pdb|2XFJ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2XFK|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
(
Phenylmethyl)propyl)-3-(Ethylamino)-5-((Methylsulfonyl)(
Phenyl)amino)benzamide
Length = 392
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 96/262 (36%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F+ G+ G+ GL + + P L Q +PN FS+
Sbjct: 110 FIQGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLQQSEVLA 169
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 170 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 229
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 230 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 281
Query: 381 PVVNLTMKGGG----------PFFVNDPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G P P+ V++ Y + + +S ++G M
Sbjct: 282 PVISLYLMGEVTQQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIM 339
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 340 EGFYVVFDRARKRIGFAVSACH 361
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Ixs
Length = 411
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F++G+ G+ GL + + P L Q +PN FS+
Sbjct: 135 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA 194
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 195 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 254
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 255 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 306
Query: 381 PVVNLTMKG---GGPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G F + P+ V++ Y + + +S ++G M
Sbjct: 307 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIM 364
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 365 EGFYVVFDRARKRIGFAVSACH 386
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a
Length = 385
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 96/262 (36%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F+ G+ G+ GL + + P L Q +PN FS+
Sbjct: 109 FIQGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLQQSEVLA 168
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 169 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 228
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 229 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 280
Query: 381 PVVNLTMKGGG----------PFFVNDPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G P P+ V++ Y + + +S ++G M
Sbjct: 281 PVISLYLMGEVTQQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIM 338
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 339 EGFYVVFDRARKRIGFAVSACH 360
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|B Chain B, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|C Chain C, Potent Beta-Secretase 1 Inhibitor
pdb|3KYR|A Chain A, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|B Chain B, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|C Chain C, Bace-1 In Complex With A Norstatine Type Inhibitor
Length = 405
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F++G+ G+ GL + + P L Q +PN FS+
Sbjct: 129 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA 188
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 189 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 248
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 249 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 300
Query: 381 PVVNLTMKG---GGPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G F + P+ V++ Y + + +S ++G M
Sbjct: 301 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIM 358
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 359 EGFYVVFDRARKRIGFAVSACH 380
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572
pdb|3KMX|B Chain B, Structure Of Bace Bound To Sch346572
pdb|3KMY|A Chain A, Structure Of Bace Bound To Sch12472
pdb|3KMY|B Chain B, Structure Of Bace Bound To Sch12472
pdb|3KN0|A Chain A, Structure Of Bace Bound To Sch708236
pdb|3KN0|B Chain B, Structure Of Bace Bound To Sch708236
pdb|3LNK|A Chain A, Structure Of Bace Bound To Sch743813
pdb|3LNK|B Chain B, Structure Of Bace Bound To Sch743813
pdb|4FRS|A Chain A, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
pdb|4FRS|B Chain B, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
Length = 395
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F++G+ G+ GL + + P L Q +PN FS+
Sbjct: 118 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA 177
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 178 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 237
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 238 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 289
Query: 381 PVVNLTMKG---GGPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G F + P+ V++ Y + + +S ++G M
Sbjct: 290 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIM 347
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 348 EGFYVVFDRARKRIGFAVSACH 369
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor
Length = 413
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F++G+ G+ GL + + P L Q +PN FS+
Sbjct: 129 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA 188
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 189 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 248
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 249 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 300
Query: 381 PVVNLTMKG---GGPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G F + P+ V++ Y + + +S ++G M
Sbjct: 301 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIM 358
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 359 EGFYVVFDRARKRIGFAVSACH 380
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)-
Acetamide
pdb|3H0B|A Chain A, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|B Chain B, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|C Chain C, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
Length = 405
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F++G+ G+ GL + + P L Q +PN FS+
Sbjct: 129 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA 188
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 189 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 248
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 249 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 300
Query: 381 PVVNLTMKG---GGPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G F + P+ V++ Y + + +S ++G M
Sbjct: 301 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIM 358
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 359 EGFYVVFDRARKRIGFAVSACH 380
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An
Exosite- Binding Antibody
Length = 402
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F++G+ G+ GL + + P L Q +PN FS+
Sbjct: 116 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA 175
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 176 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 235
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 236 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 287
Query: 381 PVVNLTMKG---GGPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G F + P+ V++ Y + + +S ++G M
Sbjct: 288 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIM 345
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 346 EGFYVVFDRARKRIGFAVSACH 367
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|B Chain B, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|C Chain C, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3I25|A Chain A, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|B Chain B, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|C Chain C, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
Length = 406
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F++G+ G+ GL + + P L Q +PN FS+
Sbjct: 130 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA 189
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 190 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 249
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 250 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 301
Query: 381 PVVNLTMKG---GGPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G F + P+ V++ Y + + +S ++G M
Sbjct: 302 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIM 359
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 360 EGFYVVFDRARKRIGFAVSACH 381
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6- ((1s,
2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One
pdb|3VV7|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-6-((1s,2r)-
2-(3'-Methoxybiphenyl-3-Yl)cyclopropyl)-3-
Methylpyrimidin-4(3h)-One
pdb|3VV8|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6-
((1s,
2r)-2-(3'-Methylbiphenyl-4-Yl)cyclopropyl)pyrimidin-
4(3h)-One
Length = 416
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F++G+ G+ GL + + P L Q +PN FS+
Sbjct: 132 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA 191
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 192 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 251
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 252 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 303
Query: 381 PVVNLTMKG---GGPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G F + P+ V++ Y + + +S ++G M
Sbjct: 304 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIM 361
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 362 EGFYVVFDRARKRIGFAVSACH 383
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1
Inhibitors: Prime Side Chromane-Containing Inhibitors
Length = 408
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F++G+ G+ GL + + P L Q +PN FS+
Sbjct: 125 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA 184
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 185 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 244
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 245 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 296
Query: 381 PVVNLTMKG---GGPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G F + P+ V++ Y + + +S ++G M
Sbjct: 297 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIM 354
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 355 EGFYVVFDRARKRIGFAVSACH 376
>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QRV|B Chain B, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QS1|A Chain A, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|B Chain B, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|C Chain C, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|D Chain D, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
Length = 336
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 88/374 (23%), Positives = 139/374 (37%), Gaps = 76/374 (20%)
Query: 94 DTYRLNSLG-FLHYTNVSVGQPALSFIVALDTGSDLFWLP---CDCVSCVHGLNSSSGQV 149
D+ LN + ++Y +G F DTGS W+P C+ + C
Sbjct: 11 DSVTLNDVANVMYYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCNTIGCKTK-------- 62
Query: 150 IDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLH 209
N+Y N S T K + T E+ Y+S GT+S GF +D++
Sbjct: 63 ---NLYDSNKSKTYEK---DGTKVEM---------------NYVS-GTVS-GFFSKDIVT 99
Query: 210 LATDEKQSKSVDSRISFGCGRVQT-GSFLDGAAPNGLFGLGMDKTSVPSI------LANQ 262
+A K ++ + G T G F +G+ GLG S+ S+ L NQ
Sbjct: 100 IANLSFPYKFIEVTDTNGFEPAYTLGQF------DGIVGLGWKDLSIGSVDPVVVELKNQ 153
Query: 263 GLIPN---SFSMCFGSDGTGRISFG---DKGSPGQGETPFSLRQTHPTYNITITQVSVGG 316
I +F + F G ++ G D+ GQ + H Y + G
Sbjct: 154 NKIEQAVFTFYLPFDDKHKGYLTIGGIEDRFYEGQLTYE---KLNHDLYWQVDLDLHFGN 210
Query: 317 NAVNFEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQT 376
V + +AI DSGTS I+ L K +PF Y+ + N
Sbjct: 211 LTVE-KATAIVDSGTS----------SITAPTEFLNKFFEGLDVVKIPFLPLYITTCN-- 257
Query: 377 NFEYPVVNLTMKGGGPFFVNDPIVIVSSEPK-GLYLYCLGVVKSD---NVNIIGQNFMTG 432
N + P L + + +P + G+ L + ++ D N I+G FM
Sbjct: 258 NPKLPT--LEFRSATNVYTLEPEYYLQQIFDFGISLCMVSIIPVDLNKNTFILGDPFMRK 315
Query: 433 YNIVFDREKNVLGW 446
Y VFD + + +G+
Sbjct: 316 YFTVFDYDNHTVGF 329
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|B Chain B, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|C Chain C, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
Length = 405
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F++G+ G+ GL + + P L Q +PN FS+
Sbjct: 129 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA 188
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 189 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 248
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 249 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 300
Query: 381 PVVNLTMKG---GGPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G F + P+ V++ Y + + +S ++G M
Sbjct: 301 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIM 358
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 359 EGFYVVFDRARKRIGFAVSACH 380
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432
pdb|3L58|B Chain B, Structure Of Bace Bound To Sch589432
pdb|3L59|A Chain A, Structure Of Bace Bound To Sch710413
pdb|3L59|B Chain B, Structure Of Bace Bound To Sch710413
pdb|3L5B|A Chain A, Structure Of Bace Bound To Sch713601
pdb|3L5B|B Chain B, Structure Of Bace Bound To Sch713601
pdb|3L5C|A Chain A, Structure Of Bace Bound To Sch723871
pdb|3L5C|B Chain B, Structure Of Bace Bound To Sch723871
pdb|3L5D|A Chain A, Structure Of Bace Bound To Sch723873
pdb|3L5D|B Chain B, Structure Of Bace Bound To Sch723873
pdb|3L5E|A Chain A, Structure Of Bace Bound To Sch736062
pdb|3L5E|B Chain B, Structure Of Bace Bound To Sch736062
pdb|3L5F|A Chain A, Structure Of Bace Bound To Sch736201
pdb|3L5F|B Chain B, Structure Of Bace Bound To Sch736201
pdb|4DJU|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJU|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJV|A Chain A, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJV|B Chain B, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJW|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJW|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJX|A Chain A, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJX|B Chain B, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJY|A Chain A, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4DJY|B Chain B, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4H1E|A Chain A, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H1E|B Chain B, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H3J|A Chain A, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4H3J|B Chain B, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4HA5|A Chain A, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4HA5|B Chain B, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4H3F|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3F|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3G|A Chain A, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3G|B Chain B, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3I|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3I|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
Length = 414
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F++G+ G+ GL + + P L Q +PN FS+
Sbjct: 130 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA 189
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 190 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 249
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 250 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 301
Query: 381 PVVNLTMKG---GGPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G F + P+ V++ Y + + +S ++G M
Sbjct: 302 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIM 359
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 360 EGFYVVFDRARKRIGFAVSACH 381
>pdb|2QU2|A Chain A, Bace1 With Compound 1
pdb|2QU3|A Chain A, Bace1 With Compound 2
pdb|2ZDZ|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 3.B.10
pdb|2ZE1|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 6g
pdb|3IGB|A Chain A, Bace-1 With Compound 3
pdb|3IN3|A Chain A, Bace1 With Compound 30
pdb|3IN4|A Chain A, Bace1 With Compound 38
pdb|3IND|A Chain A, Bace1 With The Aminohydantoin Compound 29
pdb|3INE|A Chain A, Bace1 With The Aminohydantoin Compound S-34
pdb|3INF|A Chain A, Bace1 With The Aminohydantoin Compound 37
pdb|3INH|A Chain A, Bace1 With The Aminohydantoin Compound R-58
pdb|3LHG|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 4g
pdb|3L38|A Chain A, Bace1 In Complex With The Aminopyridine Compound 44
pdb|3L3A|A Chain A, Bace-1 With The Aminopyridine Compound 32
pdb|3OOZ|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 102
pdb|3S7L|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
pdb|3S7M|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
Length = 415
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F++G+ G+ GL + + P L Q +PN FS+
Sbjct: 125 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA 184
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 185 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 244
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 245 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 296
Query: 381 PVVNLTMKG---GGPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G F + P+ V++ Y + + +S ++G M
Sbjct: 297 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIM 354
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 355 EGFYVVFDRARKRIGFAVSACH 376
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HW1|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3MSJ|A Chain A, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|B Chain B, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|C Chain C, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
Length = 411
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F++G+ G+ GL + + P L Q +PN FS+
Sbjct: 128 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA 187
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 188 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 247
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 248 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 299
Query: 381 PVVNLTMKG---GGPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G F + P+ V++ Y + + +S ++G M
Sbjct: 300 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIM 357
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 358 EGFYVVFDRARKRIGFAVSACH 379
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHR|B Chain B, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHS|A Chain A, Crystal Structure Of Bace1 At Ph 4.0
pdb|2ZHT|A Chain A, Crystal Structure Of Bace1 At Ph 4.5
pdb|2ZHU|A Chain A, Crystal Structure Of Bace1 At Ph 5.0
pdb|2ZHV|A Chain A, Crystal Structure Of Bace1 At Ph 7.0
Length = 411
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F++G+ G+ GL + + P L Q +PN FS+
Sbjct: 127 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA 186
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 187 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 246
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 247 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 298
Query: 381 PVVNLTMKG---GGPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G F + P+ V++ Y + + +S ++G M
Sbjct: 299 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIM 356
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 357 EGFYVVFDRARKRIGFAVSACH 378
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase)
pdb|1W51|A Chain A, Bace (Beta Secretase) In Complex With A Nanomolar Non-
Peptidic Inhibitor
pdb|3RSV|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(R)-3-(2-Amino-6-
O-Tolylquinolin-3-Yl)-N-((R)-2,
2-Dimethyltetrahydro-2h-Pyran-4-Yl)-2- Methylpropanamide
pdb|3RSX|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(Thiophen-3- Yl)quinolin-2-Amine
pdb|3RTH|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(2-(3,3- Dimethylbut-1-Ynyl)phenyl)quinolin-2-Amine
pdb|3RTM|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-Cyclohexyl-N-Methylpropanamide
pdb|3RTN|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
3-(2-Amino-6-O-
Tolylquinolin-3-Yl)-N-Cyclohexylpropanamide
pdb|3RU1|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-(Cyclohexylmethyl)propanamide
pdb|3RVI|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
2-((2-Amino-6-O-
Tolylquinolin-3-Yl)methyl)-N-
(Cyclohexylmethyl)pentanamide
pdb|4ACU|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 14
pdb|4ACX|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 23
pdb|4DH6|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(2r)-N-((2s,3r)-
1-(Benzo[d][1,
3]dioxol-5-Yl)-3-Hydroxy-4-((S)-6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridine]-4'-Ylamino)
Butan-2-Yl)-2-Methoxypropanamide
pdb|4FRI|A Chain A, Crystal Structure Of Bace1 In Complex With Biarylspiro
Aminooxazoline 6
pdb|4FRJ|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 9l
pdb|4FRK|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 11a
pdb|4DI2|A Chain A, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|B Chain B, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|C Chain C, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DUS|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
N-((2s,3r)-1-(4-
Fluorophenyl)-3-Hydroxy-4-((6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridin]-4'-Yl)amino) Butan-2-Yl)acetamide
pdb|4AZY|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound 10)
pdb|4B00|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound
(R)-41)
pdb|4B05|A Chain A, Preclinical Characterization Of Azd3839, A Novel Clinical
Candidate Bace1 Inhibitor For The Treatment Of Alzheimer
Disease
Length = 411
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F++G+ G+ GL + + P L Q +PN FS+
Sbjct: 128 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA 187
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 188 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 247
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 248 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 299
Query: 381 PVVNLTMKG---GGPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G F + P+ V++ Y + + +S ++G M
Sbjct: 300 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIM 357
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 358 EGFYVVFDRARKRIGFAVSACH 379
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|4FSL|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
Length = 412
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F++G+ G+ GL + + P L Q +PN FS+
Sbjct: 128 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA 187
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 188 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 247
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 248 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 299
Query: 381 PVVNLTMKG---GGPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G F + P+ V++ Y + + +S ++G M
Sbjct: 300 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIM 357
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 358 EGFYVVFDRARKRIGFAVSACH 379
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|B Chain B, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|C Chain C, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2P83|A Chain A, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|B Chain B, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|C Chain C, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
Length = 455
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F++G+ G+ GL + + P L Q +PN FS+
Sbjct: 172 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA 231
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 232 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 291
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 292 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 343
Query: 381 PVVNLTMKG---GGPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G F + P+ V++ Y + + +S ++G M
Sbjct: 344 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIM 401
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 402 EGFYVVFDRARKRIGFAVSACH 423
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132
pdb|3LPI|B Chain B, Structure Of Bace Bound To Sch745132
pdb|3LPJ|A Chain A, Structure Of Bace Bound To Sch743641
pdb|3LPJ|B Chain B, Structure Of Bace Bound To Sch743641
pdb|3LPK|A Chain A, Structure Of Bace Bound To Sch747123
pdb|3LPK|B Chain B, Structure Of Bace Bound To Sch747123
pdb|3OHF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHH|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3OHH|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3R2F|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3SKF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKG|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|4FSE|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
Length = 455
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F++G+ G+ GL + + P L Q +PN FS+
Sbjct: 171 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA 230
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 231 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 290
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 291 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 342
Query: 381 PVVNLTMKG---GGPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G F + P+ V++ Y + + +S ++G M
Sbjct: 343 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIM 400
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 401 EGFYVVFDRARKRIGFAVSACH 422
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 5
pdb|2OHK|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
1- Amino-Isoquinoline
pdb|2OHL|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
2- Aminoquinoline
pdb|2OHM|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
N~3~-Benzylpyridine-2,3-Diamine
pdb|2OHN|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
4- (4-Fluorobenzyl)piperidine
pdb|2OHQ|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 4
pdb|2OHR|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6a
pdb|2OHS|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6b
pdb|2OHT|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 7
pdb|2OHU|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8b
pdb|2OHP|A Chain A, X-ray Crystal Structure Of Beta Secretase Complexed With
Compound 3
Length = 402
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F++G+ G+ GL + + P L Q +PN FS+
Sbjct: 126 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA 185
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 186 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 245
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 246 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 297
Query: 381 PVVNLTMKG---GGPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G F + P+ V++ Y + + +S ++G M
Sbjct: 298 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIM 355
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 356 EGFYVVFDRARKRIGFAVSACH 377
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|2F3E|A Chain A, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|B Chain B, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|C Chain C, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3F|A Chain A, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|B Chain B, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|C Chain C, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|3DUY|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DV1|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV5|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3K5C|A Chain A, Human Bace-1 Complex With Nb-216
pdb|3K5C|B Chain B, Human Bace-1 Complex With Nb-216
pdb|3K5C|C Chain C, Human Bace-1 Complex With Nb-216
pdb|3K5F|A Chain A, Human Bace-1 Complex With Ayh011
pdb|3K5F|B Chain B, Human Bace-1 Complex With Ayh011
pdb|3K5F|C Chain C, Human Bace-1 Complex With Ayh011
pdb|3K5G|A Chain A, Human Bace-1 Complex With Bjc060
pdb|3K5G|B Chain B, Human Bace-1 Complex With Bjc060
pdb|3K5G|C Chain C, Human Bace-1 Complex With Bjc060
pdb|3PI5|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3QBH|A Chain A, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|B Chain B, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|C Chain C, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3VEU|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Avi326
pdb|3VF3|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bqq711
pdb|3VG1|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Soaking Experiment
pdb|4D83|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D88|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxq490
pdb|4D89|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Soaking Experiment
pdb|4D8C|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
Length = 402
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F++G+ G+ GL + + P L Q +PN FS+
Sbjct: 125 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA 184
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 185 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 244
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 245 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 296
Query: 381 PVVNLTMKG---GGPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G F + P+ V++ Y + + +S ++G M
Sbjct: 297 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIM 354
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 355 EGFYVVFDRARKRIGFAVSACH 376
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|3K5D|A Chain A, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|B Chain B, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|C Chain C, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3MSK|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3MSL|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3S2O|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|4D85|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bvi151
Length = 408
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F++G+ G+ GL + + P L Q +PN FS+
Sbjct: 125 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA 184
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 185 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 244
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 245 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 296
Query: 381 PVVNLTMKG---GGPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G F + P+ V++ Y + + +S ++G M
Sbjct: 297 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIM 354
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 355 EGFYVVFDRARKRIGFAVSACH 376
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8c
pdb|2VA6|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 24
pdb|2VA7|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 27
Length = 455
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F++G+ G+ GL + + P L Q +PN FS+
Sbjct: 172 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA 231
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 232 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 291
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 292 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 343
Query: 381 PVVNLTMKG---GGPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G F + P+ V++ Y + + +S ++G M
Sbjct: 344 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIM 401
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 402 EGFYVVFDRARKRIGFAVSACH 423
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQR|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|C Chain C, Crystal Structure Of Bace1 With Its Inhibitor
Length = 433
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F++G+ G+ GL + + P L Q +PN FS+
Sbjct: 149 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA 208
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 209 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 268
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 269 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 320
Query: 381 PVVNLTMKG---GGPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G F + P+ V++ Y + + +S ++G M
Sbjct: 321 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIM 378
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 379 EGFYVVFDRARKRIGFAVSACH 400
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1
pdb|3TPL|A Chain A, Apo Structure Of Bace1
pdb|3TPL|B Chain B, Apo Structure Of Bace1
pdb|3TPL|C Chain C, Apo Structure Of Bace1
pdb|3TPP|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQP|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQU|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQW|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQX|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DV9|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4FGX|A Chain A, Crystal Structure Of Bace1 With Novel Inhibitor
Length = 433
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F++G+ G+ GL + + P L Q +PN FS+
Sbjct: 149 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA 208
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 209 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 268
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 269 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 320
Query: 381 PVVNLTMKG---GGPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G F + P+ V++ Y + + +S ++G M
Sbjct: 321 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIM 378
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 379 EGFYVVFDRARKRIGFAVSACH 400
>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|B Chain B, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|C Chain C, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|D Chain D, Proplasmepsin Ii From Plasmodium Falciparum
Length = 380
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 86/394 (21%), Positives = 143/394 (36%), Gaps = 59/394 (14%)
Query: 64 AHRDRYFRLRGRGLAAQGNDKTPLTFSAGNDTYRLNSLGFLHYTNVSVGQPALSFIVALD 123
H+ + + G KT S+ ++ ++ + Y + VG F LD
Sbjct: 26 THKLKNYIKESVNFLNSGLTKTNYLGSSNDNIELVDFQNIMFYGDAEVGDNQQPFTFILD 85
Query: 124 TGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSAG 183
TGS W+P V C ++ + ++Y + S T K
Sbjct: 86 TGSANLWVP--SVKC------TTAGCLTKHLYDSSKSRTYEK------------------ 119
Query: 184 SNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPN 243
++ Y+S GT+S GF +D++ + K ++ + G T S D
Sbjct: 120 DGTKVEMNYVS-GTVS-GFFSKDLVTVGNLSLPYKFIEVIDTNGFEPTYTASTFD----- 172
Query: 244 GLFGLGMDKTSVPSI------LANQGLIPN---SFSMCFGSDGTGRISFGDKGSPGQGET 294
G+ GLG S+ S+ L NQ I N +F + TG ++ G E
Sbjct: 173 GILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHDKHTGFLTIGGIEERFY-EG 231
Query: 295 PFSLRQTHPTYNITITQVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKE 354
P + + + IT + GN + + + I DSGTS A T ++ N + +
Sbjct: 232 PLTYEKLNHDLYWQITLDAHVGNIMLEKANCIVDSGTS-------AITVPTDFLNKMLQN 284
Query: 355 KRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCL 414
LPF + FE+ N G + + + E G L L
Sbjct: 285 LDVIKVPFLPFYVTLCNNSKLPTFEFTSEN------GKYTLEPEYYLQHIEDVGPGLCML 338
Query: 415 GVVKSDN---VNIIGQNFMTGYNIVFDREKNVLG 445
++ D I+G FM Y VFD + + +G
Sbjct: 339 NIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVG 372
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(2,
6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto-
Butyramide
Length = 405
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F++G+ G+ GL + + P L Q +PN FS+
Sbjct: 129 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA 188
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 189 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 248
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 249 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 300
Query: 381 PVVNLTMKG---GGPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G F + P+ V++ Y + + +S ++G M
Sbjct: 301 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSCGTVMGAVIM 358
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 359 EGFYVVFDRARKRIGFAVSACH 380
>pdb|1SME|A Chain A, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1SME|B Chain B, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1ME6|A Chain A, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1ME6|B Chain B, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1XE5|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE5|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|2IGX|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|B Chain B, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2R9B|A Chain A, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
pdb|2R9B|B Chain B, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
Length = 329
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 84/354 (23%), Positives = 133/354 (37%), Gaps = 59/354 (16%)
Query: 104 LHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTS 163
+ Y + VG F LDTGS W+P V C ++ + ++Y + S T
Sbjct: 15 MFYGDAEVGDNQQPFTFILDTGSANLWVP--SVKC------TTAGCLTKHLYDSSKSRTY 66
Query: 164 SKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSR 223
K ++ Y+S GT+S GF +D++ + K ++
Sbjct: 67 EK------------------DGTKVEMNYVS-GTVS-GFFSKDLVTVGNLSLPYKFIEVI 106
Query: 224 ISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSI------LANQGLIPN---SFSMCFG 274
+ G T S D G+ GLG S+ S+ L NQ I N +F +
Sbjct: 107 DTNGFEPTYTASTFD-----GILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVH 161
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFSAIFDSGTSFT 334
TG ++ G E P + + + IT + GN + + + I DSGTS
Sbjct: 162 DKHTGFLTIGGIEERFY-EGPLTYEKLNHDLYWQITLDAHVGNIMLEKANCIVDSGTS-- 218
Query: 335 YLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFF 394
A T ++ N + + LPF YV N N + P T + G +
Sbjct: 219 -----AITVPTDFLNKMLQNLDVIKVPFLPF---YVTLCN--NSKLPTFEFTSE-NGKYT 267
Query: 395 VNDPIVIVSSEPKGLYLYCLGVVKSDN---VNIIGQNFMTGYNIVFDREKNVLG 445
+ + E G L L ++ D I+G FM Y VFD + + +G
Sbjct: 268 LEPEYYLQHIEDVGPGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVG 321
>pdb|1LF3|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Eh58
pdb|1LF4|A Chain A, Structure Of Plasmepsin Ii
pdb|1XDH|A Chain A, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1XDH|B Chain B, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1W6H|A Chain A, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6H|B Chain B, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6I|A Chain A, Plasmepsin Ii-Pepstatin A Complex
pdb|1W6I|C Chain C, Plasmepsin Ii-Pepstatin A Complex
Length = 331
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 84/354 (23%), Positives = 133/354 (37%), Gaps = 59/354 (16%)
Query: 104 LHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTS 163
+ Y + VG F LDTGS W+P V C ++ + ++Y + S T
Sbjct: 17 MFYGDAEVGDNQQPFTFILDTGSANLWVP--SVKC------TTAGCLTKHLYDSSKSRTY 68
Query: 164 SKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSR 223
K ++ Y+S GT+S GF +D++ + K ++
Sbjct: 69 EK------------------DGTKVEMNYVS-GTVS-GFFSKDLVTVGNLSLPYKFIEVI 108
Query: 224 ISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSI------LANQGLIPN---SFSMCFG 274
+ G T S D G+ GLG S+ S+ L NQ I N +F +
Sbjct: 109 DTNGFEPTYTASTFD-----GILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVH 163
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFSAIFDSGTSFT 334
TG ++ G E P + + + IT + GN + + + I DSGTS
Sbjct: 164 DKHTGFLTIGGIEERFY-EGPLTYEKLNHDLYWQITLDAHVGNIMLEKANCIVDSGTS-- 220
Query: 335 YLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFF 394
A T ++ N + + LPF YV N N + P T + G +
Sbjct: 221 -----AITVPTDFLNKMLQNLDVIKVPFLPF---YVTLCN--NSKLPTFEFTSE-NGKYT 269
Query: 395 VNDPIVIVSSEPKGLYLYCLGVVKSDN---VNIIGQNFMTGYNIVFDREKNVLG 445
+ + E G L L ++ D I+G FM Y VFD + + +G
Sbjct: 270 LEPEYYLQHIEDVGPGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVG 323
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide
pdb|2ZJL|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Bromo-2,3-Dimethoxy-Benzyl)-Piperidin-
4-Yl]-4-Mercapto-Butyramide
Length = 405
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 97/262 (37%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F++G+ G+ GL + + P L Q +PN FS+
Sbjct: 129 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA 188
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 189 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 248
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SGT T L P + F + K K +ST P + C+ N +
Sbjct: 249 SGT--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 300
Query: 381 PVVNLTMKG---GGPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G F + P+ V++ Y + + +S +G M
Sbjct: 301 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTCMGAVIM 358
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 359 EGFYVVFDRARKRIGFAVSACH 380
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid (2-Mercapto-Ethyl)- Amide
Length = 405
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 97/262 (37%), Gaps = 55/262 (20%)
Query: 236 FLDGAAPNGLFGLGMDKTSVPS--------ILANQGLIPNSFSM-------------CFG 274
F++G+ G+ GL + + P L Q +PN FS+
Sbjct: 129 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA 188
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFD 328
S G I G S G ++ + Y + I +V + G + + +I D
Sbjct: 189 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVD 248
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKE-KRETSTSDLPFEY-------CYVLSPNQTNFEY 380
SG T L P + F + K K +ST P + C+ N +
Sbjct: 249 SGC--TNLRLP-----KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI-F 300
Query: 381 PVVNLTMKG---GGPFFVN-------DPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFM 430
PV++L + G F + P+ V++ Y + + +S ++G M
Sbjct: 301 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS--QSSTGTVMGAVIM 358
Query: 431 TGYNIVFDREKNVLGWKASDCY 452
G+ +VFDR + +G+ S C+
Sbjct: 359 EGFYVVFDRARKRIGFAVSACH 380
>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral
Inhibitor
Length = 453
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 89/394 (22%), Positives = 146/394 (37%), Gaps = 59/394 (14%)
Query: 64 AHRDRYFRLRGRGLAAQGNDKTPLTFSAGNDTYRLNSLGFLHYTNVSVGQPALSFIVALD 123
H+ + + G KT S+ ++ ++ + Y + VG F LD
Sbjct: 99 THKLKNYIKESVNFLNSGLTKTNYLGSSNDNIELVDFQNIMFYGDAEVGDNQQPFTFILD 158
Query: 124 TGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSAG 183
TGS W+P V C ++ + ++Y + S T K
Sbjct: 159 TGSANLWVP--SVKC------TTAGCLTKHLYDSSKSRTYEK------------------ 192
Query: 184 SNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPN 243
++ Y+S GT+S GF +D++ + K ++ + G T S D
Sbjct: 193 DGTKVEMNYVS-GTVS-GFFSKDLVTVGNLSLPYKFIEVIDTNGFEPTYTASTFD----- 245
Query: 244 GLFGLGMDKTSVPSI------LANQGLIPN---SFSMCFGSDGTGRISFGDKGSPGQGET 294
G+ GLG S+ S+ L NQ I N +F + TG ++ G E
Sbjct: 246 GILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHDKHTGFLTIGGIEERFY-EG 304
Query: 295 PFSLRQTHPTYNITITQVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKE 354
P + + + IT + GN + + + I DSGTS A T ++ N + +
Sbjct: 305 PLTYEKLNHDLYWQITLDAHVGNIMLEKANCIVDSGTS-------AITVPTDFLNKMLQN 357
Query: 355 KRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCL 414
LPF YV N N + P T + G + + + E G L L
Sbjct: 358 LDVIKVPFLPF---YVTLCN--NSKLPTFEFTSE-NGKYTLEPEYYLQHIEDVGPGLCML 411
Query: 415 GVVKSDN---VNIIGQNFMTGYNIVFDREKNVLG 445
++ D I+G FM Y VFD + + +G
Sbjct: 412 NIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVG 445
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 76/356 (21%), Positives = 135/356 (37%), Gaps = 73/356 (20%)
Query: 108 NVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDF----NIYSPNTSSTS 163
++ VG V +DTGS W+ C + SGQ +F + P++SS++
Sbjct: 17 DIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQV---TYSGQTNNFCKQEGTFDPSSSSSA 73
Query: 164 SKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSR 223
+ N + + Y D T S G +D
Sbjct: 74 QNL------------------NQDFSIEY-GDLTSSQGSFYKDT---------------- 98
Query: 224 ISFGCGRVQTGSFLD---GAAPNGLFGLGMDKT--------SVPSILANQGLI-PNSFSM 271
+ FG ++ F D + G+ G+G +VP L QG+I N++S+
Sbjct: 99 VGFGGISIKNQQFADVTTTSVDQGIMGIGFTADEAGYNLYDNVPVTLKKQGIINKNAYSL 158
Query: 272 CFGSD--GTGRISFGDKGSPGQGETPFSLRQTHPT-YNITITQVSVGGNAVNFEFSAIFD 328
S+ TG+I FG + T +L T + + ++ G +V+ + D
Sbjct: 159 YLNSEDASTGKIIFGGVDNAKYTGTLTALPVTSSVELRVHLGSINFDGTSVSTNADVVLD 218
Query: 329 SGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMK 388
SGT+ TY + + + + + E LP C + NF+ V +T+
Sbjct: 219 SGTTITYFSQSTADKFARIVGATWDSRNEIYR--LP--SCDLSGDAVFNFDQG-VKITV- 272
Query: 389 GGGPFFVNDPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFMTGYNIVFDREKNVL 444
P +++ S+ Y G+ ++D NI+G NF+ IV+D + +
Sbjct: 273 ---PL---SELILKDSDSSICY---FGISRND-ANILGDNFLRRAYIVYDLDDKTI 318
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 95/246 (38%), Gaps = 54/246 (21%)
Query: 105 HYTNVSVGQPALSFIVALDTGSDLFWLP---CDCVSCVHGLNSSSGQVIDFNIYSPNTSS 161
++ +S+G P +F+V DTGS W+P C +C + ++P+ SS
Sbjct: 14 YFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACT-----------SHSRFNPSESS 62
Query: 162 TSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVD 221
T S N LQ G++ TGF D L + QS V
Sbjct: 63 TYST---NGQTFSLQ----------------YGSGSL-TGFFGYDTLTV-----QSIQVP 97
Query: 222 SRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSV-PSILANQGLIPNS------FSMCF- 273
++ FG + G+ A +G+ GL SV + A QG++ FS+
Sbjct: 98 NQ-EFGLSENEPGTNFVYAQFDGIMGLAYPALSVDEATTAMQGMVQEGALTSPVFSVYLS 156
Query: 274 ---GSDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNF---EFSAIF 327
GS G + G S G+ ++ + I I + +GG A + AI
Sbjct: 157 NQQGSSGGAVVFGGVDSSLYTGQIYWAPVTQELYWQIGIEEFLIGGQASGWCSEGCQAIV 216
Query: 328 DSGTSF 333
D+GTS
Sbjct: 217 DTGTSL 222
>pdb|1M43|A Chain A, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1M43|B Chain B, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1LEE|A Chain A, Crystal Structure Of Plasmepsin From P. Falciparum In
Complex With Inhibitor Rs367
pdb|1LF2|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Rs370
Length = 331
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 84/354 (23%), Positives = 132/354 (37%), Gaps = 59/354 (16%)
Query: 104 LHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTS 163
+ Y + VG F LDTGS W+P V C ++ + ++Y + S T
Sbjct: 17 MFYGDAEVGDNQQPFTFILDTGSANLWVP--SVKC------TTAGCLTKHLYDSSKSRTY 68
Query: 164 SKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSR 223
K ++ Y+S GT+S GF +D++ + K ++
Sbjct: 69 EK------------------DGTKVEMNYVS-GTVS-GFFSKDLVTVGNLSLPYKFIEVI 108
Query: 224 ISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSI------LANQGLIPN---SFSMCFG 274
+ G T S D G+ GLG S+ S+ L NQ I N +F +
Sbjct: 109 DTNGFEPTYTASTFD-----GILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVH 163
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFSAIFDSGTSFT 334
TG ++ G E P + + + IT + GN + + I DSGTS
Sbjct: 164 DKHTGFLTIGGIEERFY-EGPLTYEKLNHDLYWQITLDAHVGNISLEKANCIVDSGTS-- 220
Query: 335 YLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFF 394
A T ++ N + + LPF YV N N + P T + G +
Sbjct: 221 -----AITVPTDFLNKMLQNLDVIKVPFLPF---YVTLCN--NSKLPTFEFTSE-NGKYT 269
Query: 395 VNDPIVIVSSEPKGLYLYCLGVVKSDN---VNIIGQNFMTGYNIVFDREKNVLG 445
+ + E G L L ++ D I+G FM Y VFD + + +G
Sbjct: 270 LEPEYYLQHIEDVGPGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVG 323
>pdb|3F9Q|A Chain A, Re-Refinement Of Uncomplexed Plasmepsin Ii From Plasmodium
Falciparum
Length = 329
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 84/354 (23%), Positives = 132/354 (37%), Gaps = 59/354 (16%)
Query: 104 LHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTS 163
+ Y + VG F LDTGS W+P V C ++ + ++Y + S T
Sbjct: 15 MFYGDAEVGDNQQPFTFILDTGSANLWVP--SVKC------TTAGCLTKHLYDSSKSRTY 66
Query: 164 SKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSR 223
K ++ Y+S GT+S GF +D++ + K ++
Sbjct: 67 EK------------------DGTKVEMNYVS-GTVS-GFFSKDLVTVGNLSLPYKFIEVI 106
Query: 224 ISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSI------LANQGLIPN---SFSMCFG 274
+ G T S D G+ GLG S+ S+ L NQ I N +F +
Sbjct: 107 DTNGFEPTYTASTFD-----GILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVH 161
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFSAIFDSGTSFT 334
TG ++ G E P + + + IT + GN + + I DSGTS
Sbjct: 162 DKHTGFLTIGGIEERFY-EGPLTYEKLNHDLYWQITLDAHVGNISLEKANCIVDSGTS-- 218
Query: 335 YLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFF 394
A T ++ N + + LPF YV N N + P T + G +
Sbjct: 219 -----AITVPTDFLNKMLQNLDVIKVPFLPF---YVTLCN--NSKLPTFEFTSE-NGKYT 267
Query: 395 VNDPIVIVSSEPKGLYLYCLGVVKSDN---VNIIGQNFMTGYNIVFDREKNVLG 445
+ + E G L L ++ D I+G FM Y VFD + + +G
Sbjct: 268 LEPEYYLQHIEDVGPGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVG 321
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 98 LNSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP---CDCVSC 138
+N L ++ +S+G P +F V DTGS W+P C +C
Sbjct: 18 INYLDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPAC 61
>pdb|1QS8|A Chain A, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
pdb|1QS8|B Chain B, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
Length = 329
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 82/377 (21%), Positives = 126/377 (33%), Gaps = 80/377 (21%)
Query: 93 NDTYRLNSLG-FLHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVID 151
ND L+ + + Y VG F++ DTGS W+P
Sbjct: 5 NDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSK----------------- 47
Query: 152 FNIYSPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGT---------MSTGF 202
CNS+ C ++ S+ S Y DGT GF
Sbjct: 48 ---------------KCNSSGCSIKNLYDSSKSKS-----YEKDGTKVDITYGSGTVKGF 87
Query: 203 LVEDVL---HLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSI- 258
+D++ HL+ K + +D+ +G+ GLG S+ SI
Sbjct: 88 FSKDLVTLGHLSMPYKFIEVIDTD--------DLEPIYSSVEFDGILGLGWKDLSIGSID 139
Query: 259 -----LANQGLIPN---SFSMCFGSDGTGRISFGD-KGSPGQGETPFSLRQTHPTYNITI 309
L NQ I N +F + G ++ G + +G + + H Y
Sbjct: 140 PIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYE-KLNHDLYWQID 198
Query: 310 TQVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCY 369
V G + + + I DSGT+ T SE N LPF
Sbjct: 199 LDVHFGKQTME-KANVIVDSGTT-------TITAPSEFLNKFFANLNVIKVPFLPFYVTT 250
Query: 370 VLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNF 429
+ E+ N T +++N PI+ V + + L V N I+G F
Sbjct: 251 CDNKEMPTLEFKSANNTYTLEPEYYMN-PILEV--DDTLCMITMLPVDIDSNTFILGDPF 307
Query: 430 MTGYNIVFDREKNVLGW 446
M Y VFD +K +G+
Sbjct: 308 MRKYFTVFDYDKESVGF 324
>pdb|1PPL|E Chain E, Crystallographic Analysis Of Transition-State Mimics Bound
To Penicillopepsin: Phosphorus-Containing Peptide
Analogues
pdb|1PPM|E Chain E, Crystallographic Analysis Of Transition-state Mimics Bound
To Penicillopepsin: Phosphorus-containing Peptide
Analogues
pdb|1APT|E Chain E, Crystallographic Analysis Of A Pepstatin Analogue Binding
To The Aspartyl Proteinase Penicillopepsin At 1.8
Angstroms Resolution
pdb|1APU|E Chain E, Crystallographic Analysis Of A Pepstatin Analogue Binding
To The Aspartyl Proteinase Penicillopepsin At 1.8
Angstroms Resolution
pdb|1APV|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Difluorostatine-And
Difluorostatone-Containing Peptides
pdb|1APW|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Difluorostatine-And
Difluorostatone-Containing Peptides
pdb|1PPK|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Phosphorous-Containing Peptide
Analogues
pdb|1BXO|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor: Methyl
Cyclo[(2s)-2-[[(1r)-1-(N-(L-N-(3-
Methylbutanoyl)valyl-L-Aspartyl)amino)-3-Methylbut Yl]
Hydroxyphosphinyloxy]-3-(3-Aminomethyl) Phenylpropanoate
pdb|1BXQ|A Chain A, Acid Proteinase (Penicillopepsin) Complex With Phosphonate
Inhibitor.
pdb|2WEA|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor:
Methyl[cyclo-7[(2r)-((N-Valyl)
Amino)-2-(Hydroxyl-(1s)-1-Methyoxycarbonyl-2-
Phenylethoxy)
Phosphinyloxy-Ethyl]-1-Naphthaleneacetamide], Sodium
Salt
pdb|2WEB|A Chain A, Acid Proteinase (penicillopepsin) (e.c.3.4.23.20) Complex
With Phosphonate Inhibitor:
Methyl(2s)-[1-(((n-formyl)-l-
Valyl)amino-2-(2-naphthyl)ethyl)hydroxyphosphinyloxy]-3-
Phenylpropanoate, Sodium Salt
pdb|2WEC|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor: Methyl(2s)-[1-(((N-(1-
Naphthaleneacetyl))-L-Valyl)aminomethyl)hydroxy
Phosphinyloxy]-3-Phenylpropanoate, Sodium Salt
pdb|2WED|A Chain A, Acid Proteinase (penicillopepsin) (e.c.3.4.23.20) Complex
With Phosphonate Macrocyclic
Inhibitor:methyl[cyclo-7[(2r)-
((n-valyl)amino)-2-(hydroxyl-(1s)-1-methyoxycarbonyl-2-
Phenylethoxy)phosphinyloxy-ethyl]-1-
naphthaleneacetamide], Sodium Salt
pdb|3APP|A Chain A, Structure And Refinement Of Penicillopepsin At 1.8
Angstroms Resolution
Length = 323
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 18/127 (14%)
Query: 323 FSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPV 382
FS I D+GT+ L+D +S+ ++ ++ +++++ Y + S N +F +
Sbjct: 208 FSGIADTGTTLLLLDDSV---VSQYYSQVSGAQQDSNAGG----YVFDCSTNLPDFSVSI 260
Query: 383 VNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCLGVVKSDN---VNIIGQNFMTGYNIVFDR 439
T P +++ P G CLG ++S++ +I G F+ +VFD
Sbjct: 261 SGYT--------ATVPGSLINYGPSGDGSTCLGGIQSNSGIGFSIFGDIFLKSQYVVFDS 312
Query: 440 EKNVLGW 446
+ LG+
Sbjct: 313 DGPQLGF 319
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 105 HYTNVSVGQPALSFIVALDTGSDLFWLPCD 134
+ NV VG PA ++ + +DTGS WL D
Sbjct: 14 YVVNVGVGSPATTYSLLVDTGSSNTWLGAD 43
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 86 PLTFSAGNDTYRL-NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP 132
PL D L N + ++ + VG P F V DTGS W+P
Sbjct: 34 PLRSEEEGDIVALKNYMNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVP 81
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP---CDCVSC 138
N L ++ + +G P F V DTGS FW+P C +C
Sbjct: 10 NYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNAC 52
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP---CDCVSC 138
N L ++ + +G P F V DTGS FW+P C +C
Sbjct: 10 NYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNAC 52
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 97
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP 132
N + +Y + +G P F V DTGS W+P
Sbjct: 9 NYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVP 42
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP 132
N + +Y + +G P +F V DTGS W+P
Sbjct: 57 NYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVP 90
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 105 HYTNVSVGQPALSFIVALDTGSDLFWLP 132
++ + +G P F V DTGS + W+P
Sbjct: 15 YFGEIGIGTPPQKFTVIFDTGSSVLWVP 42
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP 132
N L +Y + +G P +F V DTGS W+P
Sbjct: 11 NYLNSQYYGEIGIGTPPQTFKVIFDTGSANLWVP 44
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP 132
N + +Y + +G P +F V DTGS W+P
Sbjct: 11 NYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVP 44
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP 132
N + +Y + +G P +F V DTGS W+P
Sbjct: 7 NYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVP 40
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP 132
N + +Y + +G P +F V DTGS W+P
Sbjct: 10 NYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVP 43
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP 132
N + +Y + +G P +F V DTGS W+P
Sbjct: 14 NYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVP 47
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP 132
N + +Y + +G P +F V DTGS W+P
Sbjct: 14 NYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVP 47
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP 132
N + +Y + +G P +F V DTGS W+P
Sbjct: 14 NYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVP 47
>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
pdb|1MIQ|B Chain B, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
Length = 375
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 81/374 (21%), Positives = 125/374 (33%), Gaps = 74/374 (19%)
Query: 93 NDTYRLNSLG-FLHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVID 151
ND L+ + + Y VG F++ DTGS W+P
Sbjct: 51 NDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSK----------------- 93
Query: 152 FNIYSPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGT---------MSTGF 202
CNS+ C ++ S+ S Y DGT GF
Sbjct: 94 ---------------KCNSSGCSIKNLYDSSKSKS-----YEKDGTKVDITYGSGTVKGF 133
Query: 203 LVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSI---- 258
+D++ L K ++ + + + DG + GLG S+ SI
Sbjct: 134 FSKDLVTLGHLSMPYKFIEVTDTDDLEPIYSSVEFDG-----ILGLGWKDLSIGSIDPIV 188
Query: 259 --LANQGLIPN---SFSMCFGSDGTGRISFGD-KGSPGQGETPFSLRQTHPTYNITITQV 312
L NQ I N +F + G ++ G + +G + + H Y V
Sbjct: 189 VELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYE-KLNHDLYWQIDLDV 247
Query: 313 SVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLS 372
G + + + I DSGT+ T SE N LPF +
Sbjct: 248 HFGKQTME-KANVIVDSGTT-------TITAPSEFLNKFFANLNVIKVPFLPFYVTTCDN 299
Query: 373 PNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFMTG 432
E+ N T +++N PI+ V + + L V N I+G FM
Sbjct: 300 KEMPTLEFKSANNTYTLEPEYYMN-PILEV--DDTLCMITMLPVDIDSNTFILGDPFMRK 356
Query: 433 YNIVFDREKNVLGW 446
Y VFD +K +G+
Sbjct: 357 YFTVFDYDKESVGF 370
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 105 HYTNVSVGQPALSFIVALDTGSDLFWLP 132
+Y + +G P +F V DTGS W+P
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVP 47
>pdb|1BLF|A Chain A, Structure Of Diferric Bovine Lactoferrin At 2.8 Angstroms
Resolution
Length = 689
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 39/107 (36%), Gaps = 23/107 (21%)
Query: 75 RGLAAQGNDKTPL----TFSAGNDTYRLNSLGF----------LHYTNVSVGQPALSFIV 120
R +A + D L F AG D Y+L + HY V+V + +F +
Sbjct: 47 RAIAEKKADAVTLDGGMVFEAGRDPYKLRPVAAEIYGTKESPQTHYYAVAVVKKGSNFQL 106
Query: 121 ALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVP 167
G SC GL S+G +I I P S T S P
Sbjct: 107 DQLQGRK---------SCHTGLGRSAGWIIPMGILRPYLSWTESLEP 144
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 105 HYTNVSVGQPALSFIVALDTGSDLFWLP---CDCVSC 138
+Y +S+G P SF V DTGS W+ C +C
Sbjct: 14 YYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQAC 50
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 65/185 (35%), Gaps = 40/185 (21%)
Query: 105 HYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSS 164
+ T ++ P +S + +D G W+ CD SST
Sbjct: 22 YVTTINQRTPLVSENLVVDLGGRFLWVDCD---------------------QNYVSSTYR 60
Query: 165 KVPCNSTLCELQKQC--------PSAGSN---CPYQVRYLSDGTMSTGFLVEDVLHL-AT 212
V C ++ C L P G N C T + G + EDV+ + +T
Sbjct: 61 PVRCRTSQCSLSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVEST 120
Query: 213 DEKQSKSVDS--RISFGCGRVQTGSFLDGAAPN--GLFGLGMDKTSVPSILANQGLIPNS 268
D S V + R F C S L A G+ GLG + ++PS A+
Sbjct: 121 DGSSSGRVVTVPRFIFSCAPT---SLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRK 177
Query: 269 FSMCF 273
F+MC
Sbjct: 178 FAMCL 182
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 65/185 (35%), Gaps = 40/185 (21%)
Query: 105 HYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSS 164
+ T ++ P +S + +D G W+ CD SST
Sbjct: 22 YVTTINQRTPLVSENLVVDLGGRFLWVDCD---------------------QNYVSSTYR 60
Query: 165 KVPCNSTLCELQKQC--------PSAGSN---CPYQVRYLSDGTMSTGFLVEDVLHL-AT 212
V C ++ C L P G N C T + G + EDV+ + +T
Sbjct: 61 PVRCRTSQCSLSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVEST 120
Query: 213 DEKQSKSVDS--RISFGCGRVQTGSFLDGAAPN--GLFGLGMDKTSVPSILANQGLIPNS 268
D S V + R F C S L A G+ GLG + ++PS A+
Sbjct: 121 DGSSSGRVVTVPRFIFSCAPT---SLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRK 177
Query: 269 FSMCF 273
F+MC
Sbjct: 178 FAMCL 182
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 109 VSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPC 168
VS+G P F + DTGS W+P G ++S G + + P++SST +
Sbjct: 24 VSIGTPGQDFYLLFDTGSSDTWVPH------KGCDNSEG-CVGKRFFDPSSSSTFKETDY 76
Query: 169 N 169
N
Sbjct: 77 N 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,665,999
Number of Sequences: 62578
Number of extensions: 679988
Number of successful extensions: 1628
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1436
Number of HSP's gapped (non-prelim): 187
length of query: 517
length of database: 14,973,337
effective HSP length: 103
effective length of query: 414
effective length of database: 8,527,803
effective search space: 3530510442
effective search space used: 3530510442
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)