Query 010129
Match_columns 517
No_of_seqs 317 out of 1665
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 21:23:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010129.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010129hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 1.6E-65 3.4E-70 536.2 43.8 392 23-453 18-430 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 1.7E-54 3.7E-59 450.4 35.8 331 100-452 42-397 (398)
3 PTZ00165 aspartyl protease; Pr 100.0 2.5E-52 5.4E-57 438.9 38.6 309 94-455 109-452 (482)
4 cd05490 Cathepsin_D2 Cathepsin 100.0 1.6E-52 3.4E-57 425.6 30.6 303 99-448 1-325 (325)
5 cd06096 Plasmepsin_5 Plasmepsi 100.0 3.3E-52 7E-57 423.1 32.1 300 104-452 3-326 (326)
6 cd05478 pepsin_A Pepsin A, asp 100.0 5.2E-52 1.1E-56 420.2 31.4 297 99-448 5-317 (317)
7 cd05472 cnd41_like Chloroplast 100.0 6.1E-51 1.3E-55 409.1 32.6 284 104-451 1-299 (299)
8 cd05477 gastricsin Gastricsins 100.0 7.4E-51 1.6E-55 412.0 32.6 296 102-449 1-318 (318)
9 cd05486 Cathespin_E Cathepsin 100.0 3E-51 6.5E-56 414.5 29.4 293 105-448 1-316 (316)
10 cd06098 phytepsin Phytepsin, a 100.0 7E-51 1.5E-55 411.7 31.3 287 99-448 5-317 (317)
11 cd05488 Proteinase_A_fungi Fun 100.0 1.1E-50 2.4E-55 410.9 30.2 297 99-448 5-320 (320)
12 cd05487 renin_like Renin stimu 100.0 2E-50 4.4E-55 410.1 31.9 301 99-449 3-326 (326)
13 cd05485 Cathepsin_D_like Cathe 100.0 1.8E-50 3.9E-55 410.7 30.6 303 99-448 6-329 (329)
14 cd05489 xylanase_inhibitor_I_l 100.0 3.5E-50 7.6E-55 411.6 32.8 310 111-449 2-361 (362)
15 PTZ00147 plasmepsin-1; Provisi 100.0 1.1E-48 2.4E-53 408.2 33.7 306 92-450 126-450 (453)
16 cd05473 beta_secretase_like Be 100.0 6.7E-49 1.4E-53 404.8 31.0 316 103-455 2-351 (364)
17 cd05475 nucellin_like Nucellin 100.0 2.2E-48 4.9E-53 385.2 30.1 258 104-451 2-273 (273)
18 PTZ00013 plasmepsin 4 (PM4); P 100.0 8.8E-48 1.9E-52 400.6 33.9 305 93-450 126-449 (450)
19 cd06097 Aspergillopepsin_like 100.0 1.7E-47 3.7E-52 380.2 27.4 264 105-448 1-278 (278)
20 cd05476 pepsin_A_like_plant Ch 100.0 3.4E-46 7.3E-51 368.2 28.3 244 104-451 1-265 (265)
21 cd05474 SAP_like SAPs, pepsin- 100.0 2.6E-44 5.6E-49 360.4 28.9 263 104-449 2-295 (295)
22 PF00026 Asp: Eukaryotic aspar 100.0 3.8E-45 8.2E-50 369.9 22.2 297 104-449 1-317 (317)
23 cd05471 pepsin_like Pepsin-lik 100.0 2.2E-42 4.8E-47 343.7 29.7 264 105-448 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 1E-30 2.3E-35 238.3 15.3 157 105-285 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 99.9 6.5E-24 1.4E-28 193.3 14.1 142 304-448 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 7.7E-22 1.7E-26 167.6 12.7 107 107-248 1-109 (109)
27 cd05483 retropepsin_like_bacte 97.6 0.00023 5E-09 58.1 7.9 91 104-249 2-93 (96)
28 TIGR02281 clan_AA_DTGA clan AA 95.1 0.26 5.7E-06 42.3 10.2 32 101-134 8-39 (121)
29 PF13650 Asp_protease_2: Aspar 94.8 0.26 5.7E-06 39.1 9.1 26 107-134 1-26 (90)
30 cd05479 RP_DDI RP_DDI; retrope 94.0 0.62 1.4E-05 40.1 10.1 29 104-134 16-44 (124)
31 cd05479 RP_DDI RP_DDI; retrope 93.5 0.27 5.8E-06 42.4 6.8 25 422-446 100-124 (124)
32 PF08284 RVP_2: Retroviral asp 92.0 0.67 1.5E-05 40.6 7.5 27 422-448 105-131 (135)
33 cd05484 retropepsin_like_LTR_2 91.4 0.23 5.1E-06 40.1 3.6 28 105-134 1-28 (91)
34 TIGR02281 clan_AA_DTGA clan AA 87.9 6.7 0.00014 33.5 10.1 36 302-344 9-44 (121)
35 TIGR03698 clan_AA_DTGF clan AA 87.6 3 6.4E-05 34.9 7.6 24 421-444 84-107 (107)
36 PF13975 gag-asp_proteas: gag- 85.8 1.5 3.3E-05 33.7 4.5 31 102-134 6-36 (72)
37 PF11925 DUF3443: Protein of u 83.5 15 0.00033 37.4 11.4 55 278-340 216-273 (370)
38 PF00077 RVP: Retroviral aspar 82.2 2.1 4.5E-05 35.0 4.2 27 106-134 7-33 (100)
39 cd05482 HIV_retropepsin_like R 73.4 4.7 0.0001 32.3 3.6 25 108-134 2-26 (87)
40 PF13650 Asp_protease_2: Aspar 69.0 5.2 0.00011 31.4 3.1 29 312-344 3-31 (90)
41 cd06094 RP_Saci_like RP_Saci_l 68.1 38 0.00082 27.3 7.6 18 323-340 10-27 (89)
42 cd06095 RP_RTVL_H_like Retrope 65.2 8.2 0.00018 30.6 3.5 25 108-134 2-26 (86)
43 PF13975 gag-asp_proteas: gag- 64.1 13 0.00028 28.4 4.3 29 312-344 13-41 (72)
44 PF12384 Peptidase_A2B: Ty3 tr 61.7 12 0.00026 33.6 4.0 22 323-344 46-67 (177)
45 PF02160 Peptidase_A3: Caulifl 60.7 12 0.00026 34.9 4.2 52 379-448 66-117 (201)
46 PF09668 Asp_protease: Asparty 59.5 52 0.0011 28.3 7.5 29 311-343 28-56 (124)
47 cd05484 retropepsin_like_LTR_2 56.9 19 0.00041 28.7 4.3 30 311-344 4-33 (91)
48 cd05483 retropepsin_like_bacte 55.5 17 0.00038 28.7 3.9 30 311-344 6-35 (96)
49 COG3577 Predicted aspartyl pro 53.7 1.2E+02 0.0026 28.4 9.3 38 95-134 95-133 (215)
50 PF09668 Asp_protease: Asparty 49.5 13 0.00029 31.9 2.3 34 104-139 24-58 (124)
51 cd05481 retropepsin_like_LTR_1 42.5 22 0.00049 28.7 2.6 31 312-345 3-33 (93)
52 cd06095 RP_RTVL_H_like Retrope 41.8 29 0.00062 27.5 3.1 29 312-344 3-31 (86)
53 PF00077 RVP: Retroviral aspar 39.2 20 0.00044 29.0 1.8 25 312-340 10-34 (100)
54 PF12384 Peptidase_A2B: Ty3 tr 28.7 74 0.0016 28.7 3.7 28 107-134 35-62 (177)
55 COG5550 Predicted aspartyl pro 26.6 49 0.0011 28.3 2.1 23 422-444 95-117 (125)
56 KOG0012 DNA damage inducible p 21.3 7.7E+02 0.017 25.3 9.6 40 411-450 306-347 (380)
57 TIGR03698 clan_AA_DTGF clan AA 20.5 1.3E+02 0.0028 25.0 3.5 27 107-133 2-33 (107)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=1.6e-65 Score=536.15 Aligned_cols=392 Identities=25% Similarity=0.459 Sum_probs=310.1
Q ss_pred cccCCceeEEEEEeccCCccccccccCCCCCCCCHHHHHHHHhcChhHhHHHhhhhccCCCCCceeecCCCceeecccCC
Q 010129 23 CCFGFGTFGFDFHHRYSDPVKGILAVDDLPKKGSFAYYSALAHRDRYFRLRGRGLAAQGNDKTPLTFSAGNDTYRLNSLG 102 (517)
Q Consensus 23 ~~~~~~~~~~~l~h~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (517)
......+++++|+||+++ ++|...+.....++++++++||+ +|++++........++. . .+...+
T Consensus 18 ~~~~~~~~~~~l~h~~~~-----~sp~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~~~~~--~-----~~~~~~ 82 (431)
T PLN03146 18 AEAPKGGFTVDLIHRDSP-----KSPFYNPSETPSQRLRNAFRRSI---SRVNHFRPTDASPNDPQ--S-----DLISNG 82 (431)
T ss_pred ccccCCceEEEEEeCCCC-----CCCCCCCCCChhHHHHHHHHHHH---HHHHHHhhccccCCccc--c-----CcccCC
Confidence 334567899999999987 33333345566788999999999 56666643111111111 1 111345
Q ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccCCCC---C
Q 010129 103 FLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQK---Q 178 (517)
Q Consensus 103 ~~Y~~~v~vGTP~Q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~---~ 178 (517)
..|+++|.||||||++.|++||||+++||+|. |..|..+. ++.|||++|+||+.++|+++.|+... .
T Consensus 83 ~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~---------~~~fdps~SST~~~~~C~s~~C~~~~~~~~ 153 (431)
T PLN03146 83 GEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQV---------SPLFDPKKSSTYKDVSCDSSQCQALGNQAS 153 (431)
T ss_pred ccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCC---------CCcccCCCCCCCcccCCCCcccccCCCCCC
Confidence 68999999999999999999999999999999 99998654 28899999999999999999998642 3
Q ss_pred CCCCCCCCceeEEeCCCCCeEEEEEEEEEEEeccCCCccceecceeeeeeeeeccCCCCCCCCCceeEeeCCCCCChhHH
Q 010129 179 CPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSI 258 (517)
Q Consensus 179 C~~~~~~~~~~~~Yg~dg~~~~G~~~~Dtl~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGilGLg~~~~S~~~q 258 (517)
|... +.|.|.+.| +|++.+.|++++|+|+|++..+. ...++++.|||++.+.|.|.. ..+||||||++.+|+++|
T Consensus 154 c~~~-~~c~y~i~Y-gdgs~~~G~l~~Dtltlg~~~~~-~~~v~~~~FGc~~~~~g~f~~--~~~GilGLG~~~~Sl~sq 228 (431)
T PLN03146 154 CSDE-NTCTYSYSY-GDGSFTKGNLAVETLTIGSTSGR-PVSFPGIVFGCGHNNGGTFDE--KGSGIVGLGGGPLSLISQ 228 (431)
T ss_pred CCCC-CCCeeEEEe-CCCCceeeEEEEEEEEeccCCCC-cceeCCEEEeCCCCCCCCccC--CCceeEecCCCCccHHHH
Confidence 7543 469999999 78888999999999999864321 356889999999988876532 358999999999999999
Q ss_pred HhhcCCCCceeEEeeCC-----CCCeeEEeCCCCCC---CCceecceeCCCCCeEEEEEeEEEeCCeeeecc--------
Q 010129 259 LANQGLIPNSFSMCFGS-----DGTGRISFGDKGSP---GQGETPFSLRQTHPTYNITITQVSVGGNAVNFE-------- 322 (517)
Q Consensus 259 l~~~g~i~~~FS~~l~~-----~~~G~L~fGg~d~~---~~~~tp~~~~~~~~~y~v~l~~i~vg~~~~~~~-------- 322 (517)
|... +.++|||||.+ ...|.|+||+.... ...+||++......+|.|+|++|+||++.+.++
T Consensus 229 l~~~--~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~ 306 (431)
T PLN03146 229 LGSS--IGGKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVE 306 (431)
T ss_pred hhHh--hCCcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCC
Confidence 9753 45699999975 23799999985321 367789886544578999999999999988753
Q ss_pred -CcEEEeccccceeecHHHHHHHHHHHHHhhhcccccCCCCCCcccccccCCCCCCCCCCeEEEEEcCCccEEEcCCeeE
Q 010129 323 -FSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVI 401 (517)
Q Consensus 323 -~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~ 401 (517)
..+||||||++++||+++|++|+++|.+++...... .....++.||+... ...+|+|+|+| +|+++.|++.+|+
T Consensus 307 ~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~-~~~~~~~~C~~~~~---~~~~P~i~~~F-~Ga~~~l~~~~~~ 381 (431)
T PLN03146 307 EGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVS-DPQGLLSLCYSSTS---DIKLPIITAHF-TGADVKLQPLNTF 381 (431)
T ss_pred CCcEEEeCCccceecCHHHHHHHHHHHHHHhccccCC-CCCCCCCccccCCC---CCCCCeEEEEE-CCCeeecCcceeE
Confidence 268999999999999999999999999988653321 22334678998532 25789999999 6899999988887
Q ss_pred EEeCCCCeeEEEEEEEeCCCceeechhhhceeEEEEeCCCCEEEEEecCCCC
Q 010129 402 VSSEPKGLYLYCLGVVKSDNVNIIGQNFMTGYNIVFDREKNVLGWKASDCYG 453 (517)
Q Consensus 402 ~~~~~~~~~~~Cl~~~~~~~~~IlG~~fl~~~yvvfD~~~~~iGfa~~~c~~ 453 (517)
+....+ .+|+++....+.||||+.|||++|+|||++++|||||+.+|.+
T Consensus 382 ~~~~~~---~~Cl~~~~~~~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~~ 430 (431)
T PLN03146 382 VKVSED---LVCFAMIPTSSIAIFGNLAQMNFLVGYDLESKTVSFKPTDCTK 430 (431)
T ss_pred EEcCCC---cEEEEEecCCCceEECeeeEeeEEEEEECCCCEEeeecCCcCc
Confidence 765443 5799988776689999999999999999999999999999975
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-54 Score=450.45 Aligned_cols=331 Identities=34% Similarity=0.594 Sum_probs=275.3
Q ss_pred cCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CC-CCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccCCCC
Q 010129 100 SLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CV-SCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQK 177 (517)
Q Consensus 100 ~~~~~Y~~~v~vGTP~Q~~~v~vDTGS~~~Wv~~~-C~-~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~ 177 (517)
+.+.+|+++|.||||||+|.|++||||+++||+|. |. .|..+.. +.|||++|+||+.+.|+++.|....
T Consensus 42 ~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~---------~~f~p~~SSt~~~~~c~~~~c~~~~ 112 (398)
T KOG1339|consen 42 YSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHN---------PIFDPSASSTYKSVGCSSPRCKSLP 112 (398)
T ss_pred ccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCC---------CccCccccccccccCCCCccccccc
Confidence 45568999999999999999999999999999999 88 7876431 4599999999999999999999986
Q ss_pred CCCCCCCCCceeEEeCCCCCeEEEEEEEEEEEeccCCCccceecceeeeeeeeeccCCCCCC-CCCceeEeeCCCCCChh
Q 010129 178 QCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDG-AAPNGLFGLGMDKTSVP 256 (517)
Q Consensus 178 ~C~~~~~~~~~~~~Yg~dg~~~~G~~~~Dtl~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~-~~~dGilGLg~~~~S~~ 256 (517)
.|...++.|.|.+.| +|++.++|++++|+|+|++.+ ....+++.|||+..+.|. +.. .+.|||||||++.++++
T Consensus 113 ~~~~~~~~C~y~i~Y-gd~~~~~G~l~~Dtv~~~~~~---~~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~~~~S~~ 187 (398)
T KOG1339|consen 113 QSCSPNSSCPYSIQY-GDGSSTSGYLATDTVTFGGTT---SLPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGRGSLSVP 187 (398)
T ss_pred cCcccCCcCceEEEe-CCCCceeEEEEEEEEEEcccc---ccccccEEEEeeecCccc-cccccccceEeecCCCCccce
Confidence 666667899999999 788999999999999999643 356678999999999876 333 56799999999999999
Q ss_pred HHHhhcCCCCceeEEeeCCC-----CCeeEEeCCCCCC-CCc---eecceeCCCCCeEEEEEeEEEeCCee------eec
Q 010129 257 SILANQGLIPNSFSMCFGSD-----GTGRISFGDKGSP-GQG---ETPFSLRQTHPTYNITITQVSVGGNA------VNF 321 (517)
Q Consensus 257 ~ql~~~g~i~~~FS~~l~~~-----~~G~L~fGg~d~~-~~~---~tp~~~~~~~~~y~v~l~~i~vg~~~------~~~ 321 (517)
+|+...+...++||+||.++ ..|.|+||+.|.. +.+ ++|++.... .+|.|.+++|+|+++. ...
T Consensus 188 ~q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~-~~y~v~l~~I~vgg~~~~~~~~~~~ 266 (398)
T KOG1339|consen 188 SQLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPS-TYYQVNLDGISVGGKRPIGSSLFCT 266 (398)
T ss_pred eecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCC-ccEEEEEeEEEECCccCCCcceEec
Confidence 99998877666899999984 3799999999998 445 677776554 5999999999999843 223
Q ss_pred c-CcEEEeccccceeecHHHHHHHHHHHHHhhhcccccCCCCCCcccccccCCCCCCCCCCeEEEEEcCCccEEEcCCee
Q 010129 322 E-FSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIV 400 (517)
Q Consensus 322 ~-~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~ 400 (517)
+ .++|+||||++++||+++|++|.+++.+.+.. ......++..||...... ..+|.|+|+|.+|+.|.|++++|
T Consensus 267 ~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~~---~~~~~~~~~~C~~~~~~~--~~~P~i~~~f~~g~~~~l~~~~y 341 (398)
T KOG1339|consen 267 DGGGAIIDSGTSLTYLPTSAYNALREAIGAEVSV---VGTDGEYFVPCFSISTSG--VKLPDITFHFGGGAVFSLPPKNY 341 (398)
T ss_pred CCCCEEEECCcceeeccHHHHHHHHHHHHhheec---cccCCceeeecccCCCCc--ccCCcEEEEECCCcEEEeCccce
Confidence 2 67999999999999999999999999987511 111133566899875321 35999999996589999999998
Q ss_pred EEEeCCCCeeEEEEEEEeCC---CceeechhhhceeEEEEeCC-CCEEEEEe--cCCC
Q 010129 401 IVSSEPKGLYLYCLGVVKSD---NVNIIGQNFMTGYNIVFDRE-KNVLGWKA--SDCY 452 (517)
Q Consensus 401 ~~~~~~~~~~~~Cl~~~~~~---~~~IlG~~fl~~~yvvfD~~-~~~iGfa~--~~c~ 452 (517)
++....+. ..|++++... ..||||+.|||+++++||.. ++||||++ .+|.
T Consensus 342 ~~~~~~~~--~~Cl~~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 342 LVEVSDGG--GVCLAFFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred EEEECCCC--CceeeEEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 88765442 1299987764 27999999999999999999 99999999 6664
No 3
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=2.5e-52 Score=438.85 Aligned_cols=309 Identities=21% Similarity=0.353 Sum_probs=248.1
Q ss_pred ceeec-ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCc
Q 010129 94 DTYRL-NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNST 171 (517)
Q Consensus 94 ~~~~~-~~~~~~Y~~~v~vGTP~Q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~ 171 (517)
...++ |+.+..|+++|+||||||+|.|++||||+++||+|. |.. ..| ..++.|||++|+||+++++..
T Consensus 109 ~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~---~~C------~~~~~yd~s~SSTy~~~~~~~- 178 (482)
T PTZ00165 109 LQQDLLNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKS---GGC------APHRKFDPKKSSTYTKLKLGD- 178 (482)
T ss_pred cceecccccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCc---ccc------cccCCCCccccCCcEecCCCC-
Confidence 34455 899999999999999999999999999999999998 643 222 234889999999999853211
Q ss_pred ccCCCCCCCCCCCCCceeEEeCCCCCeEEEEEEEEEEEeccCCCccceecceeeeeeeeeccCCCCCCCCCceeEeeCCC
Q 010129 172 LCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMD 251 (517)
Q Consensus 172 ~C~~~~~C~~~~~~~~~~~~Yg~dg~~~~G~~~~Dtl~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGilGLg~~ 251 (517)
....+.++| ++| ...|.+++|+|+|+ ++.++++.|||++..++..+.....|||||||+.
T Consensus 179 ------------~~~~~~i~Y-GsG-s~~G~l~~DtV~ig------~l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~ 238 (482)
T PTZ00165 179 ------------ESAETYIQY-GTG-ECVLALGKDTVKIG------GLKVKHQSIGLAIEESLHPFADLPFDGLVGLGFP 238 (482)
T ss_pred ------------ccceEEEEe-CCC-cEEEEEEEEEEEEC------CEEEccEEEEEEEeccccccccccccceeecCCC
Confidence 012567999 554 56799999999998 4678999999999887654555567999999997
Q ss_pred CC---------ChhHHHhhcCCC-CceeEEeeCC--CCCeeEEeCCCCCCC---CceecceeCCCCCeEEEEEeEEEeCC
Q 010129 252 KT---------SVPSILANQGLI-PNSFSMCFGS--DGTGRISFGDKGSPG---QGETPFSLRQTHPTYNITITQVSVGG 316 (517)
Q Consensus 252 ~~---------S~~~ql~~~g~i-~~~FS~~l~~--~~~G~L~fGg~d~~~---~~~tp~~~~~~~~~y~v~l~~i~vg~ 316 (517)
.. ++..+|++||++ +++||+||.+ +..|.|+|||+|+.+ .+.+.|++.....+|.|.+++|+||+
T Consensus 239 ~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~~~yW~i~l~~i~vgg 318 (482)
T PTZ00165 239 DKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVISTDYWEIEVVDILIDG 318 (482)
T ss_pred cccccccCCCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEccccceEEEEeCeEEECC
Confidence 64 456789999999 8999999986 346999999999872 34677777777789999999999999
Q ss_pred eeeec---cCcEEEeccccceeecHHHHHHHHHHHHHhhhcccccCCCCCCcccccccCCCCCCCCCCeEEEEEcCCc--
Q 010129 317 NAVNF---EFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGG-- 391 (517)
Q Consensus 317 ~~~~~---~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~-- 391 (517)
+.+.. ...+|+||||+++++|++++++|.+++... ..|+.. ..+|+|+|+| +|.
T Consensus 319 ~~~~~~~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~--------------~~C~~~------~~lP~itf~f-~g~~g 377 (482)
T PTZ00165 319 KSLGFCDRKCKAAIDTGSSLITGPSSVINPLLEKIPLE--------------EDCSNK------DSLPRISFVL-EDVNG 377 (482)
T ss_pred EEeeecCCceEEEEcCCCccEeCCHHHHHHHHHHcCCc--------------cccccc------ccCCceEEEE-CCCCC
Confidence 87754 467999999999999999999998887532 147654 5789999999 543
Q ss_pred ---cEEEcCCeeEEEe---CCCCeeEEEE-EEEeC------CCceeechhhhceeEEEEeCCCCEEEEEecCCCCCC
Q 010129 392 ---PFFVNDPIVIVSS---EPKGLYLYCL-GVVKS------DNVNIIGQNFMTGYNIVFDREKNVLGWKASDCYGVN 455 (517)
Q Consensus 392 ---~~~l~~~~~~~~~---~~~~~~~~Cl-~~~~~------~~~~IlG~~fl~~~yvvfD~~~~~iGfa~~~c~~~~ 455 (517)
+|.|++++|++.. ..+. ..|+ ++... .+.||||++|||++|+|||++++|||||+++|+...
T Consensus 378 ~~v~~~l~p~dYi~~~~~~~~~~--~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~~~~ 452 (482)
T PTZ00165 378 RKIKFDMDPEDYVIEEGDSEEQE--HQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHDQSG 452 (482)
T ss_pred ceEEEEEchHHeeeecccCCCCC--CeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccCCCC
Confidence 7899888888763 2222 5795 55542 247999999999999999999999999999986543
No 4
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=1.6e-52 Score=425.59 Aligned_cols=303 Identities=23% Similarity=0.373 Sum_probs=241.2
Q ss_pred ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccCCCC
Q 010129 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQK 177 (517)
Q Consensus 99 ~~~~~~Y~~~v~vGTP~Q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~ 177 (517)
|+.+.+|+++|.||||+|+|.|++||||+++||+|. |..|. ..| ..++.|||++|+|++..
T Consensus 1 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~-~~C------~~~~~y~~~~SsT~~~~----------- 62 (325)
T cd05490 1 NYMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLD-IAC------WLHHKYNSSKSSTYVKN----------- 62 (325)
T ss_pred CCcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCC-ccc------cCcCcCCcccCcceeeC-----------
Confidence 467889999999999999999999999999999998 75331 122 23478999999999873
Q ss_pred CCCCCCCCCceeEEeCCCCCeEEEEEEEEEEEeccCCCccceecceeeeeeeeeccCCCCCCCCCceeEeeCCCCCC---
Q 010129 178 QCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTS--- 254 (517)
Q Consensus 178 ~C~~~~~~~~~~~~Yg~dg~~~~G~~~~Dtl~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGilGLg~~~~S--- 254 (517)
+|.|.+.| ++| .+.|.+++|+|+|++ ..++++.|||++.+.+..+.....+||||||++..+
T Consensus 63 -------~~~~~i~Y-g~G-~~~G~~~~D~v~~g~------~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~ 127 (325)
T cd05490 63 -------GTEFAIQY-GSG-SLSGYLSQDTVSIGG------LQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDG 127 (325)
T ss_pred -------CcEEEEEE-CCc-EEEEEEeeeEEEECC------EEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccC
Confidence 68999999 666 479999999999984 568899999999887643444456999999997654
Q ss_pred ---hhHHHhhcCCC-CceeEEeeCCC----CCeeEEeCCCCCC-CCceecceeCCCCCeEEEEEeEEEeCCeeee--ccC
Q 010129 255 ---VPSILANQGLI-PNSFSMCFGSD----GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVN--FEF 323 (517)
Q Consensus 255 ---~~~ql~~~g~i-~~~FS~~l~~~----~~G~L~fGg~d~~-~~~~tp~~~~~~~~~y~v~l~~i~vg~~~~~--~~~ 323 (517)
+.++|+++|+| +++||+||.++ ..|.|+|||+|++ +.+.+.|++.....+|.|++++|+||++... ...
T Consensus 128 ~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~~~~~~ 207 (325)
T cd05490 128 VTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTRKAYWQIHMDQVDVGSGLTLCKGGC 207 (325)
T ss_pred CCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCcceEEEEEeeEEEECCeeeecCCCC
Confidence 55699999999 89999999862 3699999999987 5566777766666789999999999987543 235
Q ss_pred cEEEeccccceeecHHHHHHHHHHHHHhhhcccccCCCCCCcccccccCCCCCCCCCCeEEEEEcCCccEEEcCCeeEEE
Q 010129 324 SAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVS 403 (517)
Q Consensus 324 ~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~ 403 (517)
.+||||||+++++|++++++|.+++.+. .. ....+...|+.. ..+|+|+|+| +|+.+.|++++|++.
T Consensus 208 ~aiiDSGTt~~~~p~~~~~~l~~~~~~~----~~--~~~~~~~~C~~~------~~~P~i~f~f-gg~~~~l~~~~y~~~ 274 (325)
T cd05490 208 EAIVDTGTSLITGPVEEVRALQKAIGAV----PL--IQGEYMIDCEKI------PTLPVISFSL-GGKVYPLTGEDYILK 274 (325)
T ss_pred EEEECCCCccccCCHHHHHHHHHHhCCc----cc--cCCCEEeccccc------ccCCCEEEEE-CCEEEEEChHHeEEe
Confidence 7999999999999999999999988642 11 111123345432 5789999999 899999999888876
Q ss_pred eCCCCeeEEEEEEE-e------CCCceeechhhhceeEEEEeCCCCEEEEEe
Q 010129 404 SEPKGLYLYCLGVV-K------SDNVNIIGQNFMTGYNIVFDREKNVLGWKA 448 (517)
Q Consensus 404 ~~~~~~~~~Cl~~~-~------~~~~~IlG~~fl~~~yvvfD~~~~~iGfa~ 448 (517)
..... ...|++.+ . ..+.||||+.|||++|+|||++++|||||+
T Consensus 275 ~~~~~-~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 275 VSQRG-TTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred ccCCC-CCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 43221 14797543 2 124799999999999999999999999996
No 5
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=3.3e-52 Score=423.07 Aligned_cols=300 Identities=23% Similarity=0.439 Sum_probs=242.2
Q ss_pred eEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccCCCCCCCCC
Q 010129 104 LHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSA 182 (517)
Q Consensus 104 ~Y~~~v~vGTP~Q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~~C~~~ 182 (517)
+|+++|.||||+|++.|++||||+++||+|. |..|..+. ++.|||++|+|++.++|++..|.....|.
T Consensus 3 ~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~---------~~~y~~~~Sst~~~~~C~~~~c~~~~~~~-- 71 (326)
T cd06096 3 YYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHM---------EPPYNLNNSITSSILYCDCNKCCYCLSCL-- 71 (326)
T ss_pred eEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCC---------CCCcCcccccccccccCCCccccccCcCC--
Confidence 6999999999999999999999999999999 88887543 27899999999999999999996544554
Q ss_pred CCCCceeEEeCCCCCeEEEEEEEEEEEeccCCCcc-ceecceeeeeeeeeccCCCCCCCCCceeEeeCCCCCC----hhH
Q 010129 183 GSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQS-KSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTS----VPS 257 (517)
Q Consensus 183 ~~~~~~~~~Yg~dg~~~~G~~~~Dtl~~~~~~~~~-~~~~~~~~fG~~~~~~g~~~~~~~~dGilGLg~~~~S----~~~ 257 (517)
++.|.|.+.| +||+.+.|.+++|+|+|++..... .....++.|||+..+.+.+... ..+||||||+...+ ...
T Consensus 72 ~~~~~~~i~Y-~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~~-~~~GilGLg~~~~~~~~~~~~ 149 (326)
T cd06096 72 NNKCEYSISY-SEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLTQ-QATGILGLSLTKNNGLPTPII 149 (326)
T ss_pred CCcCcEEEEE-CCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCccccc-ccceEEEccCCcccccCchhH
Confidence 3579999999 788889999999999998643110 0122367899999887765433 46899999998742 222
Q ss_pred HHhhcCCC-C--ceeEEeeCCCCCeeEEeCCCCCC-CC----------ceecceeCCCCCeEEEEEeEEEeCCee--e--
Q 010129 258 ILANQGLI-P--NSFSMCFGSDGTGRISFGDKGSP-GQ----------GETPFSLRQTHPTYNITITQVSVGGNA--V-- 319 (517)
Q Consensus 258 ql~~~g~i-~--~~FS~~l~~~~~G~L~fGg~d~~-~~----------~~tp~~~~~~~~~y~v~l~~i~vg~~~--~-- 319 (517)
+|.+++.+ . ++||+||.++ .|.|+||++|+. .. +.+.|++.....+|.|.+++|+|+++. .
T Consensus 150 ~l~~~~~~~~~~~~FS~~l~~~-~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~~~y~v~l~~i~vg~~~~~~~~ 228 (326)
T cd06096 150 LLFTKRPKLKKDKIFSICLSED-GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRKYYYYVKLEGLSVYGTTSNSGN 228 (326)
T ss_pred HHHHhcccccCCceEEEEEcCC-CeEEEECccChhhhcccccccccccCCceEEeccCCceEEEEEEEEEEcccccceec
Confidence 45566555 4 9999999974 699999999976 22 445566655557899999999999885 2
Q ss_pred eccCcEEEeccccceeecHHHHHHHHHHHHHhhhcccccCCCCCCcccccccCCCCCCCCCCeEEEEEcCCccEEEcCCe
Q 010129 320 NFEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPI 399 (517)
Q Consensus 320 ~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~ 399 (517)
.....+||||||++++||+++|++|.+++ |+|+|+|++|.++.|++++
T Consensus 229 ~~~~~aivDSGTs~~~lp~~~~~~l~~~~--------------------------------P~i~~~f~~g~~~~i~p~~ 276 (326)
T cd06096 229 TKGLGMLVDSGSTLSHFPEDLYNKINNFF--------------------------------PTITIIFENNLKIDWKPSS 276 (326)
T ss_pred ccCCCEEEeCCCCcccCCHHHHHHHHhhc--------------------------------CcEEEEEcCCcEEEECHHH
Confidence 23567999999999999999999988766 7899999558999999888
Q ss_pred eEEEeCCCCeeEEEEEEEeCCCceeechhhhceeEEEEeCCCCEEEEEecCCC
Q 010129 400 VIVSSEPKGLYLYCLGVVKSDNVNIIGQNFMTGYNIVFDREKNVLGWKASDCY 452 (517)
Q Consensus 400 ~~~~~~~~~~~~~Cl~~~~~~~~~IlG~~fl~~~yvvfD~~~~~iGfa~~~c~ 452 (517)
|++...+. ..|+.+....+.+|||++|||++|+|||++++|||||+++|.
T Consensus 277 y~~~~~~~---~c~~~~~~~~~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 277 YLYKKESF---WCKGGEKSVSNKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred hccccCCc---eEEEEEecCCCceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 88765433 345665555568999999999999999999999999999993
No 6
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=5.2e-52 Score=420.21 Aligned_cols=297 Identities=26% Similarity=0.419 Sum_probs=244.1
Q ss_pred ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccCCCC
Q 010129 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQK 177 (517)
Q Consensus 99 ~~~~~~Y~~~v~vGTP~Q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~ 177 (517)
|+.+..|+++|.||||+|++.|++||||+++||+|. |..| .| ..++.|||++|+|++..
T Consensus 5 n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~---~c------~~~~~f~~~~Sst~~~~----------- 64 (317)
T cd05478 5 NYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQ---AC------SNHNRFNPRQSSTYQST----------- 64 (317)
T ss_pred cccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcc---cc------cccCcCCCCCCcceeeC-----------
Confidence 567889999999999999999999999999999998 6532 22 23488999999999985
Q ss_pred CCCCCCCCCceeEEeCCCCCeEEEEEEEEEEEeccCCCccceecceeeeeeeeeccCCCCCCCCCceeEeeCCCCC----
Q 010129 178 QCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT---- 253 (517)
Q Consensus 178 ~C~~~~~~~~~~~~Yg~dg~~~~G~~~~Dtl~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGilGLg~~~~---- 253 (517)
.+.|.+.| ++|+ +.|.+++|+|+|+ ...++++.|||++...+.+......+||||||+...
T Consensus 65 -------~~~~~~~y-g~gs-~~G~~~~D~v~ig------~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~ 129 (317)
T cd05478 65 -------GQPLSIQY-GTGS-MTGILGYDTVQVG------GISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSG 129 (317)
T ss_pred -------CcEEEEEE-CCce-EEEEEeeeEEEEC------CEEECCEEEEEEEecCccccccccccceeeeccchhcccC
Confidence 68899999 5665 7999999999998 456889999999987776554445689999998754
Q ss_pred --ChhHHHhhcCCC-CceeEEeeCCC--CCeeEEeCCCCCC-CCceecceeCCCCCeEEEEEeEEEeCCeeeec--cCcE
Q 010129 254 --SVPSILANQGLI-PNSFSMCFGSD--GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVNF--EFSA 325 (517)
Q Consensus 254 --S~~~ql~~~g~i-~~~FS~~l~~~--~~G~L~fGg~d~~-~~~~tp~~~~~~~~~y~v~l~~i~vg~~~~~~--~~~~ 325 (517)
++..+|+++|+| +++||+||.++ ..|.|+|||+|++ +.+.+.|++.....+|.|.+++|+|+++.+.. +..+
T Consensus 130 ~~~~~~~L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~v~v~g~~~~~~~~~~~ 209 (317)
T cd05478 130 ATPVFDNMMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTAETYWQITVDSVTINGQVVACSGGCQA 209 (317)
T ss_pred CCCHHHHHHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECCCCcEEEEEeeEEEECCEEEccCCCCEE
Confidence 477899999999 89999999984 4699999999987 56666666666677899999999999998864 3579
Q ss_pred EEeccccceeecHHHHHHHHHHHHHhhhcccccCCCCCCcccccccCCCCCCCCCCeEEEEEcCCccEEEcCCeeEEEeC
Q 010129 326 IFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSE 405 (517)
Q Consensus 326 iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~ 405 (517)
||||||++++||+++|++|.+++.+.... ..+|.++|... .++|.|+|+| +|+.+.||++.|+...
T Consensus 210 iiDTGts~~~lp~~~~~~l~~~~~~~~~~-----------~~~~~~~C~~~-~~~P~~~f~f-~g~~~~i~~~~y~~~~- 275 (317)
T cd05478 210 IVDTGTSLLVGPSSDIANIQSDIGASQNQ-----------NGEMVVNCSSI-SSMPDVVFTI-NGVQYPLPPSAYILQD- 275 (317)
T ss_pred EECCCchhhhCCHHHHHHHHHHhCCcccc-----------CCcEEeCCcCc-ccCCcEEEEE-CCEEEEECHHHheecC-
Confidence 99999999999999999999988653211 11344444322 5789999999 8899999998887653
Q ss_pred CCCeeEEEEEEEe-CC--CceeechhhhceeEEEEeCCCCEEEEEe
Q 010129 406 PKGLYLYCLGVVK-SD--NVNIIGQNFMTGYNIVFDREKNVLGWKA 448 (517)
Q Consensus 406 ~~~~~~~Cl~~~~-~~--~~~IlG~~fl~~~yvvfD~~~~~iGfa~ 448 (517)
. .+|+..+. .. +.||||+.|||++|+|||++++|||||+
T Consensus 276 --~--~~C~~~~~~~~~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 276 --Q--GSCTSGFQSMGLGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred --C--CEEeEEEEeCCCCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 2 46976443 32 4799999999999999999999999996
No 7
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=6.1e-51 Score=409.14 Aligned_cols=284 Identities=32% Similarity=0.559 Sum_probs=234.1
Q ss_pred eEEEEEEecCCCeEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccCCCCCCCCCC
Q 010129 104 LHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSAG 183 (517)
Q Consensus 104 ~Y~~~v~vGTP~Q~~~v~vDTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~~C~~~~ 183 (517)
+|+++|.||||||++.|++||||+++||+|. .|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~--~c--------------------------------------------- 33 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQ--PC--------------------------------------------- 33 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCC--CC---------------------------------------------
Confidence 4999999999999999999999999999885 11
Q ss_pred CCCceeEEeCCCCCeEEEEEEEEEEEeccCCCccceecceeeeeeeeeccCCCCCCCCCceeEeeCCCCCChhHHHhhcC
Q 010129 184 SNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSILANQG 263 (517)
Q Consensus 184 ~~~~~~~~Yg~dg~~~~G~~~~Dtl~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGilGLg~~~~S~~~ql~~~g 263 (517)
|.|.+.| +||+.++|.+++|+|+|++. ..++++.|||++.+.+.+. ..+||||||+...++++|+..+
T Consensus 34 --~~~~i~Y-g~Gs~~~G~~~~D~v~ig~~-----~~~~~~~Fg~~~~~~~~~~---~~~GilGLg~~~~s~~~ql~~~- 101 (299)
T cd05472 34 --CLYQVSY-GDGSYTTGDLATDTLTLGSS-----DVVPGFAFGCGHDNEGLFG---GAAGLLGLGRGKLSLPSQTASS- 101 (299)
T ss_pred --CeeeeEe-CCCceEEEEEEEEEEEeCCC-----CccCCEEEECCccCCCccC---CCCEEEECCCCcchHHHHhhHh-
Confidence 4689999 78888899999999999853 1578999999998876542 4689999999999999998765
Q ss_pred CCCceeEEeeCC---CCCeeEEeCCCCCC--CCceecceeCCC-CCeEEEEEeEEEeCCeeeec------cCcEEEeccc
Q 010129 264 LIPNSFSMCFGS---DGTGRISFGDKGSP--GQGETPFSLRQT-HPTYNITITQVSVGGNAVNF------EFSAIFDSGT 331 (517)
Q Consensus 264 ~i~~~FS~~l~~---~~~G~L~fGg~d~~--~~~~tp~~~~~~-~~~y~v~l~~i~vg~~~~~~------~~~~iiDSGT 331 (517)
.+++||+||.+ ...|+|+||++|+. .+.++|++.... ..+|.|+|++|+||++.+.. ...+||||||
T Consensus 102 -~~~~FS~~L~~~~~~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGT 180 (299)
T cd05472 102 -YGGVFSYCLPDRSSSSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGT 180 (299)
T ss_pred -hcCceEEEccCCCCCCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCC
Confidence 36899999987 45799999999985 677778776543 35899999999999998865 2479999999
Q ss_pred cceeecHHHHHHHHHHHHHhhhcccccCCCCCCcccccccCCCCCCCCCCeEEEEEcCCccEEEcCCeeEEEeCCCCeeE
Q 010129 332 SFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYL 411 (517)
Q Consensus 332 t~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~~~ 411 (517)
++++||+++|++|.+++.+++...... .....++.||..++.. ...+|+|+|+|++|+.++|++++|++...... .
T Consensus 181 t~~~lp~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~C~~~~~~~-~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~~~--~ 256 (299)
T cd05472 181 VITRLPPSAYAALRDAFRAAMAAYPRA-PGFSILDTCYDLSGFR-SVSVPTVSLHFQGGADVELDASGVLYPVDDSS--Q 256 (299)
T ss_pred cceecCHHHHHHHHHHHHHHhccCCCC-CCCCCCCccCcCCCCc-CCccCCEEEEECCCCEEEeCcccEEEEecCCC--C
Confidence 999999999999999999876432211 1122344699876533 36799999999658999999998887433333 6
Q ss_pred EEEEEEeCC---CceeechhhhceeEEEEeCCCCEEEEEecCC
Q 010129 412 YCLGVVKSD---NVNIIGQNFMTGYNIVFDREKNVLGWKASDC 451 (517)
Q Consensus 412 ~Cl~~~~~~---~~~IlG~~fl~~~yvvfD~~~~~iGfa~~~c 451 (517)
+|+++.... +.+|||+.|||++|+|||++++|||||+.+|
T Consensus 257 ~C~~~~~~~~~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 257 VCLAFAGTSDDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred EEEEEeCCCCCCCCEEEchHHccceEEEEECCCCEEeEecCCC
Confidence 799887652 4799999999999999999999999999999
No 8
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=7.4e-51 Score=412.05 Aligned_cols=296 Identities=23% Similarity=0.427 Sum_probs=240.0
Q ss_pred CceEEEEEEecCCCeEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccCCCCCCCC
Q 010129 102 GFLHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPS 181 (517)
Q Consensus 102 ~~~Y~~~v~vGTP~Q~~~v~vDTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~~C~~ 181 (517)
|..|+++|.||||+|++.|++||||+++||+|. .|..+.| ..++.|||++|+|++..
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~--~C~~~~C------~~~~~f~~~~SsT~~~~--------------- 57 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSV--LCQSQAC------TNHTKFNPSQSSTYSTN--------------- 57 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccC--CCCCccc------cccCCCCcccCCCceEC---------------
Confidence 357999999999999999999999999999998 3333333 23378999999999884
Q ss_pred CCCCCceeEEeCCCCCeEEEEEEEEEEEeccCCCccceecceeeeeeeeeccCCCCCCCCCceeEeeCCCC------CCh
Q 010129 182 AGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDK------TSV 255 (517)
Q Consensus 182 ~~~~~~~~~~Yg~dg~~~~G~~~~Dtl~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGilGLg~~~------~S~ 255 (517)
.|.|++.| ++|+ +.|.+++|+|+|+ ...++++.|||++...+..+.....+||||||+.. .++
T Consensus 58 ---~~~~~~~Y-g~Gs-~~G~~~~D~i~~g------~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~ 126 (318)
T cd05477 58 ---GETFSLQY-GSGS-LTGIFGYDTVTVQ------GIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTV 126 (318)
T ss_pred ---CcEEEEEE-CCcE-EEEEEEeeEEEEC------CEEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCH
Confidence 78999999 6665 7999999999998 45788999999998765433333468999999853 578
Q ss_pred hHHHhhcCCC-CceeEEeeCCC---CCeeEEeCCCCCC-CCceecceeCCCCCeEEEEEeEEEeCCeeeec---cCcEEE
Q 010129 256 PSILANQGLI-PNSFSMCFGSD---GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVNF---EFSAIF 327 (517)
Q Consensus 256 ~~ql~~~g~i-~~~FS~~l~~~---~~G~L~fGg~d~~-~~~~tp~~~~~~~~~y~v~l~~i~vg~~~~~~---~~~~ii 327 (517)
+.+|+++|.| +++||+||.++ ..|.|+||++|+. +.+.+.|++.....+|.|++++|+|+++.+.. +..+||
T Consensus 127 ~~~L~~~g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~~ii 206 (318)
T cd05477 127 MQGMMQQNLLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTSETYWQIGIQGFQINGQATGWCSQGCQAIV 206 (318)
T ss_pred HHHHHhcCCcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCCceEEEEEeeEEEECCEEecccCCCceeeE
Confidence 8899999999 99999999873 4699999999987 55555666656667999999999999988753 357999
Q ss_pred eccccceeecHHHHHHHHHHHHHhhhcccccCCCCCCcccccccCCCCCCCCCCeEEEEEcCCccEEEcCCeeEEEeCCC
Q 010129 328 DSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPK 407 (517)
Q Consensus 328 DSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~ 407 (517)
||||++++||+++|++|.+++.+.... ..+|.++|... ..+|+|+|+| +|.++.||++.|+... +
T Consensus 207 DSGtt~~~lP~~~~~~l~~~~~~~~~~-----------~~~~~~~C~~~-~~~p~l~~~f-~g~~~~v~~~~y~~~~--~ 271 (318)
T cd05477 207 DTGTSLLTAPQQVMSTLMQSIGAQQDQ-----------YGQYVVNCNNI-QNLPTLTFTI-NGVSFPLPPSAYILQN--N 271 (318)
T ss_pred CCCCccEECCHHHHHHHHHHhCCcccc-----------CCCEEEeCCcc-ccCCcEEEEE-CCEEEEECHHHeEecC--C
Confidence 999999999999999999998755321 12444555432 5689999999 8899999988887753 2
Q ss_pred CeeEEEE-EEEeC-------CCceeechhhhceeEEEEeCCCCEEEEEec
Q 010129 408 GLYLYCL-GVVKS-------DNVNIIGQNFMTGYNIVFDREKNVLGWKAS 449 (517)
Q Consensus 408 ~~~~~Cl-~~~~~-------~~~~IlG~~fl~~~yvvfD~~~~~iGfa~~ 449 (517)
.+|+ ++.+. .+.||||+.|||++|+|||++++|||||++
T Consensus 272 ---~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 272 ---GYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred ---CeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 4695 55431 136999999999999999999999999985
No 9
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=3e-51 Score=414.47 Aligned_cols=293 Identities=23% Similarity=0.391 Sum_probs=235.6
Q ss_pred EEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccCCCCCCCCCC
Q 010129 105 HYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSAG 183 (517)
Q Consensus 105 Y~~~v~vGTP~Q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~~C~~~~ 183 (517)
|+++|+||||+|++.|++||||+++||+|. |. .+.| ..++.|||++|+|++..
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~---~~~C------~~~~~y~~~~SsT~~~~----------------- 54 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCT---SQAC------TKHNRFQPSESSTYVSN----------------- 54 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCC---Cccc------CccceECCCCCcccccC-----------------
Confidence 789999999999999999999999999998 54 2222 23378999999999885
Q ss_pred CCCceeEEeCCCCCeEEEEEEEEEEEeccCCCccceecceeeeeeeeeccCCCCCCCCCceeEeeCCCCCC------hhH
Q 010129 184 SNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTS------VPS 257 (517)
Q Consensus 184 ~~~~~~~~Yg~dg~~~~G~~~~Dtl~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGilGLg~~~~S------~~~ 257 (517)
.|.|.+.| ++| .+.|.+++|+|+|+ ...++++.|||+..+.+..+.....+||||||++..+ +..
T Consensus 55 -~~~~~i~Y-g~g-~~~G~~~~D~v~ig------~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~ 125 (316)
T cd05486 55 -GEAFSIQY-GTG-SLTGIIGIDQVTVE------GITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFD 125 (316)
T ss_pred -CcEEEEEe-CCc-EEEEEeeecEEEEC------CEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHH
Confidence 78999999 565 57999999999998 4568899999998876654444457999999997654 467
Q ss_pred HHhhcCCC-CceeEEeeCCC----CCeeEEeCCCCCC-CCceecceeCCCCCeEEEEEeEEEeCCeeeec--cCcEEEec
Q 010129 258 ILANQGLI-PNSFSMCFGSD----GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVNF--EFSAIFDS 329 (517)
Q Consensus 258 ql~~~g~i-~~~FS~~l~~~----~~G~L~fGg~d~~-~~~~tp~~~~~~~~~y~v~l~~i~vg~~~~~~--~~~~iiDS 329 (517)
+|++||+| .++||+||.++ ..|.|+|||+|++ +.+.+.|++.....+|.|++++|+|+++.+.. ...+||||
T Consensus 126 ~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~~~~w~v~l~~i~v~g~~~~~~~~~~aiiDT 205 (316)
T cd05486 126 NMMAQNLVELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTVQGYWQIQLDNIQVGGTVIFCSDGCQAIVDT 205 (316)
T ss_pred HHHhcCCCCCCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCCceEEEEEeeEEEEecceEecCCCCEEEECC
Confidence 89999999 89999999862 3699999999987 55666666666678999999999999987754 35799999
Q ss_pred cccceeecHHHHHHHHHHHHHhhhcccccCCCCCCcccccccCCCCCCCCCCeEEEEEcCCccEEEcCCeeEEEeC-CCC
Q 010129 330 GTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSE-PKG 408 (517)
Q Consensus 330 GTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~-~~~ 408 (517)
||+++++|++++++|.+++.+.. . + .+|.++|... ..+|+|+|+| +|+.++|++++|++... .+.
T Consensus 206 GTs~~~lP~~~~~~l~~~~~~~~----~--~------~~~~~~C~~~-~~~p~i~f~f-~g~~~~l~~~~y~~~~~~~~~ 271 (316)
T cd05486 206 GTSLITGPSGDIKQLQNYIGATA----T--D------GEYGVDCSTL-SLMPSVTFTI-NGIPYSLSPQAYTLEDQSDGG 271 (316)
T ss_pred CcchhhcCHHHHHHHHHHhCCcc----c--C------CcEEEecccc-ccCCCEEEEE-CCEEEEeCHHHeEEecccCCC
Confidence 99999999999999988775421 0 1 1233444322 5789999999 88999999988877542 222
Q ss_pred eeEEEEEEEeC-------CCceeechhhhceeEEEEeCCCCEEEEEe
Q 010129 409 LYLYCLGVVKS-------DNVNIIGQNFMTGYNIVFDREKNVLGWKA 448 (517)
Q Consensus 409 ~~~~Cl~~~~~-------~~~~IlG~~fl~~~yvvfD~~~~~iGfa~ 448 (517)
..|+..+.. .+.||||+.|||++|+|||.+++|||||+
T Consensus 272 --~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 272 --GYCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred --CEEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 579754321 23799999999999999999999999996
No 10
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=7e-51 Score=411.71 Aligned_cols=287 Identities=27% Similarity=0.433 Sum_probs=233.1
Q ss_pred ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CC---CCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccC
Q 010129 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CV---SCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCE 174 (517)
Q Consensus 99 ~~~~~~Y~~~v~vGTP~Q~~~v~vDTGS~~~Wv~~~-C~---~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~ 174 (517)
|+.+..|+++|.||||+|+|.|++||||+++||+|. |. .|.. ++.|||++|+|++..
T Consensus 5 n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~-----------~~~y~~~~SsT~~~~-------- 65 (317)
T cd06098 5 NYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYF-----------HSKYKSSKSSTYKKN-------- 65 (317)
T ss_pred ccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccccc-----------cCcCCcccCCCcccC--------
Confidence 677889999999999999999999999999999998 64 3432 378999999999884
Q ss_pred CCCCCCCCCCCCceeEEeCCCCCeEEEEEEEEEEEeccCCCccceecceeeeeeeeeccCCCCCCCCCceeEeeCCCCCC
Q 010129 175 LQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTS 254 (517)
Q Consensus 175 ~~~~C~~~~~~~~~~~~Yg~dg~~~~G~~~~Dtl~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGilGLg~~~~S 254 (517)
.+.+.+.| ++| .+.|.+++|+|+|++ ..++++.|||++.+.+..+.....+||||||+...+
T Consensus 66 ----------~~~~~i~Y-g~G-~~~G~~~~D~v~ig~------~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s 127 (317)
T cd06098 66 ----------GTSASIQY-GTG-SISGFFSQDSVTVGD------LVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEIS 127 (317)
T ss_pred ----------CCEEEEEc-CCc-eEEEEEEeeEEEECC------EEECCEEEEEEEecCCccccccccceeccccccchh
Confidence 67899999 555 478999999999984 568899999999876543444467999999997654
Q ss_pred ------hhHHHhhcCCC-CceeEEeeCCC----CCeeEEeCCCCCC-CCceecceeCCCCCeEEEEEeEEEeCCeeeec-
Q 010129 255 ------VPSILANQGLI-PNSFSMCFGSD----GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVNF- 321 (517)
Q Consensus 255 ------~~~ql~~~g~i-~~~FS~~l~~~----~~G~L~fGg~d~~-~~~~tp~~~~~~~~~y~v~l~~i~vg~~~~~~- 321 (517)
+..+|+++|+| +++||+||.++ ..|.|+|||+|++ +.+.+.|++.....+|.|.+++|+|+++.+..
T Consensus 128 ~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~ 207 (317)
T cd06098 128 VGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTRKGYWQFEMGDVLIGGKSTGFC 207 (317)
T ss_pred hcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCcCcEEEEEeCeEEECCEEeeec
Confidence 44689999999 89999999862 4799999999987 55666666665667999999999999988754
Q ss_pred --cCcEEEeccccceeecHHHHHHHHHHHHHhhhcccccCCCCCCcccccccCCCCCCCCCCeEEEEEcCCccEEEcCCe
Q 010129 322 --EFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPI 399 (517)
Q Consensus 322 --~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~ 399 (517)
...+||||||+++++|+++++++. +...|+.. ..+|+|+|+| +|+.++|++++
T Consensus 208 ~~~~~aivDTGTs~~~lP~~~~~~i~------------------~~~~C~~~------~~~P~i~f~f-~g~~~~l~~~~ 262 (317)
T cd06098 208 AGGCAAIADSGTSLLAGPTTIVTQIN------------------SAVDCNSL------SSMPNVSFTI-GGKTFELTPEQ 262 (317)
T ss_pred CCCcEEEEecCCcceeCCHHHHHhhh------------------ccCCcccc------ccCCcEEEEE-CCEEEEEChHH
Confidence 356999999999999998766553 11247654 4689999999 88999999988
Q ss_pred eEEEeCCCCeeEEEEEEEe-C------CCceeechhhhceeEEEEeCCCCEEEEEe
Q 010129 400 VIVSSEPKGLYLYCLGVVK-S------DNVNIIGQNFMTGYNIVFDREKNVLGWKA 448 (517)
Q Consensus 400 ~~~~~~~~~~~~~Cl~~~~-~------~~~~IlG~~fl~~~yvvfD~~~~~iGfa~ 448 (517)
|++....+. ...|++.+. . .+.||||+.|||++|+|||++++|||||+
T Consensus 263 yi~~~~~~~-~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 263 YILKVGEGA-AAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred eEEeecCCC-CCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 877543321 157975432 1 23799999999999999999999999995
No 11
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=1.1e-50 Score=410.88 Aligned_cols=297 Identities=22% Similarity=0.393 Sum_probs=240.4
Q ss_pred ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccCCCC
Q 010129 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQK 177 (517)
Q Consensus 99 ~~~~~~Y~~~v~vGTP~Q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~ 177 (517)
|+.+..|+++|.||||+|++.|++||||+++||+|. |. ...| ..++.|+|++|+|++..
T Consensus 5 n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~---~~~C------~~~~~y~~~~Sst~~~~----------- 64 (320)
T cd05488 5 NYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCG---SIAC------FLHSKYDSSASSTYKAN----------- 64 (320)
T ss_pred ccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCC---Cccc------CCcceECCCCCcceeeC-----------
Confidence 567789999999999999999999999999999998 64 2222 12378999999999873
Q ss_pred CCCCCCCCCceeEEeCCCCCeEEEEEEEEEEEeccCCCccceecceeeeeeeeeccCCCCCCCCCceeEeeCCCCCChh-
Q 010129 178 QCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVP- 256 (517)
Q Consensus 178 ~C~~~~~~~~~~~~Yg~dg~~~~G~~~~Dtl~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGilGLg~~~~S~~- 256 (517)
.|.|.+.| ++|+ +.|.+++|+++|++ ..++++.|||++.+.+..+.....+||||||++..+..
T Consensus 65 -------~~~~~~~y-~~g~-~~G~~~~D~v~ig~------~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~ 129 (320)
T cd05488 65 -------GTEFKIQY-GSGS-LEGFVSQDTLSIGD------LTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNK 129 (320)
T ss_pred -------CCEEEEEE-CCce-EEEEEEEeEEEECC------EEECCEEEEEEecCCCcceeeeeeceEEecCCccccccC
Confidence 78999999 5654 79999999999983 56789999999887665444445689999999876543
Q ss_pred -----HHHhhcCCC-CceeEEeeCC--CCCeeEEeCCCCCC-CCceecceeCCCCCeEEEEEeEEEeCCeeeec-cCcEE
Q 010129 257 -----SILANQGLI-PNSFSMCFGS--DGTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVNF-EFSAI 326 (517)
Q Consensus 257 -----~ql~~~g~i-~~~FS~~l~~--~~~G~L~fGg~d~~-~~~~tp~~~~~~~~~y~v~l~~i~vg~~~~~~-~~~~i 326 (517)
.+|+++|+| +++||+||.+ ...|.|+|||+|+. +.+.+.|++.....+|.|++++|+||++.+.. ...++
T Consensus 130 ~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~~~~~~i 209 (320)
T cd05488 130 IVPPFYNMINQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRRKAYWEVELEKIGLGDEELELENTGAA 209 (320)
T ss_pred CCCHHHHHHhcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCcCcEEEEEeCeEEECCEEeccCCCeEE
Confidence 478899999 8999999997 35799999999987 45556666655567899999999999988765 46799
Q ss_pred EeccccceeecHHHHHHHHHHHHHhhhcccccCCCCCCcccccccCCCCCCCCCCeEEEEEcCCccEEEcCCeeEEEeCC
Q 010129 327 FDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEP 406 (517)
Q Consensus 327 iDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~ 406 (517)
|||||++++||++++++|.+++.+... ...+|.++|... ..+|.|+|+| +|+++.||+++|++..
T Consensus 210 vDSGtt~~~lp~~~~~~l~~~~~~~~~-----------~~~~~~~~C~~~-~~~P~i~f~f-~g~~~~i~~~~y~~~~-- 274 (320)
T cd05488 210 IDTGTSLIALPSDLAEMLNAEIGAKKS-----------WNGQYTVDCSKV-DSLPDLTFNF-DGYNFTLGPFDYTLEV-- 274 (320)
T ss_pred EcCCcccccCCHHHHHHHHHHhCCccc-----------cCCcEEeecccc-ccCCCEEEEE-CCEEEEECHHHheecC--
Confidence 999999999999999999888754321 112444555432 5789999999 8899999998887742
Q ss_pred CCeeEEEEEEEeC-------CCceeechhhhceeEEEEeCCCCEEEEEe
Q 010129 407 KGLYLYCLGVVKS-------DNVNIIGQNFMTGYNIVFDREKNVLGWKA 448 (517)
Q Consensus 407 ~~~~~~Cl~~~~~-------~~~~IlG~~fl~~~yvvfD~~~~~iGfa~ 448 (517)
+ ..|+..+.. .+.||||+.|||++|+|||++++|||||+
T Consensus 275 ~---g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 275 S---GSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred C---CeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 2 359765532 23799999999999999999999999986
No 12
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=2e-50 Score=410.05 Aligned_cols=301 Identities=23% Similarity=0.422 Sum_probs=239.8
Q ss_pred ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccCCCC
Q 010129 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQK 177 (517)
Q Consensus 99 ~~~~~~Y~~~v~vGTP~Q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~ 177 (517)
|+.+..|+++|.||||+|++.|++||||+++||+|. |..|.. .| ..++.|||++|+|++..
T Consensus 3 ~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~-~c------~~~~~y~~~~SsT~~~~----------- 64 (326)
T cd05487 3 NYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYT-AC------VTHNLYDASDSSTYKEN----------- 64 (326)
T ss_pred ccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcch-hh------cccCcCCCCCCeeeeEC-----------
Confidence 567889999999999999999999999999999998 755321 12 24488999999999984
Q ss_pred CCCCCCCCCceeEEeCCCCCeEEEEEEEEEEEeccCCCccceecceeeeeeeeeccCCCCCCCCCceeEeeCCCCC----
Q 010129 178 QCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT---- 253 (517)
Q Consensus 178 ~C~~~~~~~~~~~~Yg~dg~~~~G~~~~Dtl~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGilGLg~~~~---- 253 (517)
+|.|++.| ++|+ +.|.+++|+|+|++. .+ ++.|||.....+.-+.....|||||||++..
T Consensus 65 -------~~~~~~~Y-g~g~-~~G~~~~D~v~~g~~------~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~ 128 (326)
T cd05487 65 -------GTEFTIHY-ASGT-VKGFLSQDIVTVGGI------PV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGG 128 (326)
T ss_pred -------CEEEEEEe-CCce-EEEEEeeeEEEECCE------Ee-eEEEEEEEeccCCccceeecceEEecCChhhcccC
Confidence 78999999 5664 899999999999842 33 4789999876432222335699999998754
Q ss_pred --ChhHHHhhcCCC-CceeEEeeCCC----CCeeEEeCCCCCC-CCceecceeCCCCCeEEEEEeEEEeCCeeeecc--C
Q 010129 254 --SVPSILANQGLI-PNSFSMCFGSD----GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVNFE--F 323 (517)
Q Consensus 254 --S~~~ql~~~g~i-~~~FS~~l~~~----~~G~L~fGg~d~~-~~~~tp~~~~~~~~~y~v~l~~i~vg~~~~~~~--~ 323 (517)
++..+|++||+| +++||+||.++ ..|.|+||++|++ +.+.+.+++.....+|.|++++|+|+++.+... .
T Consensus 129 ~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~~~~~~ 208 (326)
T cd05487 129 VTPVFDNIMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSKTGFWQIQMKGVSVGSSTLLCEDGC 208 (326)
T ss_pred CCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCcCceEEEEecEEEECCEEEecCCCC
Confidence 456789999999 99999999872 3699999999988 566666676666779999999999999987643 5
Q ss_pred cEEEeccccceeecHHHHHHHHHHHHHhhhcccccCCCCCCcccccccCCCCCCCCCCeEEEEEcCCccEEEcCCeeEEE
Q 010129 324 SAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVS 403 (517)
Q Consensus 324 ~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~ 403 (517)
.+||||||++++||.++++++++++++... .. +|.++|+.. ..+|.|+|+| +|..+.|+++.|++.
T Consensus 209 ~aiiDSGts~~~lP~~~~~~l~~~~~~~~~-------~~-----~y~~~C~~~-~~~P~i~f~f-gg~~~~v~~~~yi~~ 274 (326)
T cd05487 209 TAVVDTGASFISGPTSSISKLMEALGAKER-------LG-----DYVVKCNEV-PTLPDISFHL-GGKEYTLSSSDYVLQ 274 (326)
T ss_pred EEEECCCccchhCcHHHHHHHHHHhCCccc-------CC-----CEEEecccc-CCCCCEEEEE-CCEEEEeCHHHhEEe
Confidence 699999999999999999999998865421 12 233344332 5689999999 889999998888775
Q ss_pred eCC-CCeeEEEEE-EEeC------CCceeechhhhceeEEEEeCCCCEEEEEec
Q 010129 404 SEP-KGLYLYCLG-VVKS------DNVNIIGQNFMTGYNIVFDREKNVLGWKAS 449 (517)
Q Consensus 404 ~~~-~~~~~~Cl~-~~~~------~~~~IlG~~fl~~~yvvfD~~~~~iGfa~~ 449 (517)
... +. ..|+. +... .+.||||+.|||++|+|||++++|||||++
T Consensus 275 ~~~~~~--~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 275 DSDFSD--KLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred ccCCCC--CEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 432 22 57964 4431 237999999999999999999999999985
No 13
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=1.8e-50 Score=410.70 Aligned_cols=303 Identities=23% Similarity=0.360 Sum_probs=242.6
Q ss_pred ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccCCCC
Q 010129 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQK 177 (517)
Q Consensus 99 ~~~~~~Y~~~v~vGTP~Q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~ 177 (517)
|+.+..|+++|.||||+|++.|++||||+++||+|. |..|.. .| ..++.|||++|+|++..
T Consensus 6 n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~-~c------~~~~~y~~~~Sst~~~~----------- 67 (329)
T cd05485 6 NYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNI-AC------LLHNKYDSTKSSTYKKN----------- 67 (329)
T ss_pred eccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCc-cc------cCCCeECCcCCCCeEEC-----------
Confidence 678899999999999999999999999999999998 754321 12 12378999999999985
Q ss_pred CCCCCCCCCceeEEeCCCCCeEEEEEEEEEEEeccCCCccceecceeeeeeeeeccCCCCCCCCCceeEeeCCCCCC---
Q 010129 178 QCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTS--- 254 (517)
Q Consensus 178 ~C~~~~~~~~~~~~Yg~dg~~~~G~~~~Dtl~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGilGLg~~~~S--- 254 (517)
.|.|.+.| ++|+ +.|.+++|+++|++ ..++++.|||+..+.+..+.....+||||||+...+
T Consensus 68 -------~~~~~i~Y-~~g~-~~G~~~~D~v~ig~------~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~ 132 (329)
T cd05485 68 -------GTEFAIQY-GSGS-LSGFLSTDTVSVGG------VSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDG 132 (329)
T ss_pred -------CeEEEEEE-CCce-EEEEEecCcEEECC------EEECCEEEEEEEecCCccccccccceEEEcCCccccccC
Confidence 78999999 6665 79999999999984 567899999998876643444456999999998765
Q ss_pred ---hhHHHhhcCCC-CceeEEeeCCC----CCeeEEeCCCCCC-CCceecceeCCCCCeEEEEEeEEEeCCeeeec-cCc
Q 010129 255 ---VPSILANQGLI-PNSFSMCFGSD----GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVNF-EFS 324 (517)
Q Consensus 255 ---~~~ql~~~g~i-~~~FS~~l~~~----~~G~L~fGg~d~~-~~~~tp~~~~~~~~~y~v~l~~i~vg~~~~~~-~~~ 324 (517)
+..+|+++|+| +++||+||.+. ..|.|+|||+|++ +.+.+.+++.....+|.|.++++.|+++.+.. +..
T Consensus 133 ~~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~~~~i~v~~~~~~~~~~~ 212 (329)
T cd05485 133 VVPVFYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTRKGYWQFKMDSVSVGEGEFCSGGCQ 212 (329)
T ss_pred CCCHHHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCCceEEEEEeeEEEECCeeecCCCcE
Confidence 34799999999 89999999862 3699999999987 44555566555567899999999999987753 457
Q ss_pred EEEeccccceeecHHHHHHHHHHHHHhhhcccccCCCCCCcccccccCCCCCCCCCCeEEEEEcCCccEEEcCCeeEEEe
Q 010129 325 AIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSS 404 (517)
Q Consensus 325 ~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~ 404 (517)
+||||||+++++|++++++|.+++... .. . ..||.++|... .++|+|+|+| ||+.+.|++++|++..
T Consensus 213 ~iiDSGtt~~~lP~~~~~~l~~~~~~~----~~--~-----~~~~~~~C~~~-~~~p~i~f~f-gg~~~~i~~~~yi~~~ 279 (329)
T cd05485 213 AIADTGTSLIAGPVDEIEKLNNAIGAK----PI--I-----GGEYMVNCSAI-PSLPDITFVL-GGKSFSLTGKDYVLKV 279 (329)
T ss_pred EEEccCCcceeCCHHHHHHHHHHhCCc----cc--c-----CCcEEEecccc-ccCCcEEEEE-CCEEeEEChHHeEEEe
Confidence 999999999999999999998887542 11 0 12445555432 5689999999 8999999998888764
Q ss_pred CCCCeeEEEEE-EEeC------CCceeechhhhceeEEEEeCCCCEEEEEe
Q 010129 405 EPKGLYLYCLG-VVKS------DNVNIIGQNFMTGYNIVFDREKNVLGWKA 448 (517)
Q Consensus 405 ~~~~~~~~Cl~-~~~~------~~~~IlG~~fl~~~yvvfD~~~~~iGfa~ 448 (517)
...+ ..+|+. +... .+.||||+.|||++|+|||++++|||||+
T Consensus 280 ~~~~-~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 280 TQMG-QTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred cCCC-CCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 4321 157975 4421 23799999999999999999999999985
No 14
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=3.5e-50 Score=411.62 Aligned_cols=310 Identities=26% Similarity=0.436 Sum_probs=246.2
Q ss_pred ecCCCeE-EEEEEeCCCCceeEecCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccCCC--C----------
Q 010129 111 VGQPALS-FIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQ--K---------- 177 (517)
Q Consensus 111 vGTP~Q~-~~v~vDTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~--~---------- 177 (517)
+|||-.+ +.|++||||+++||+|. |.+|+||+.++|+++.|+.. .
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~----------------------~~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~ 59 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCD----------------------AGHSSTYQTVPCSSSVCSLANRYHCPGTCGGAP 59 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCC----------------------CCCcCCCCccCcCChhhccccccCCCccccCCC
Confidence 5888888 99999999999999996 24688999999999999853 1
Q ss_pred --CCCCCCCCCceeEE-eCCCCCeEEEEEEEEEEEeccCCCcc--ceecceeeeeeeeeccCCCCCCCCCceeEeeCCCC
Q 010129 178 --QCPSAGSNCPYQVR-YLSDGTMSTGFLVEDVLHLATDEKQS--KSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDK 252 (517)
Q Consensus 178 --~C~~~~~~~~~~~~-Yg~dg~~~~G~~~~Dtl~~~~~~~~~--~~~~~~~~fG~~~~~~g~~~~~~~~dGilGLg~~~ 252 (517)
.|. ++.|.|... | .+++.+.|++++|+|+|+..++.. ...++++.|||++.+....+.. ..|||||||+++
T Consensus 60 ~~~c~--~~~C~y~~~~y-~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~-~~dGIlGLg~~~ 135 (362)
T cd05489 60 GPGCG--NNTCTAHPYNP-VTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPP-GAQGVAGLGRSP 135 (362)
T ss_pred CCCCC--CCcCeeEcccc-ccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCcc-ccccccccCCCc
Confidence 342 245888665 6 578899999999999998644321 1368899999999864322221 368999999999
Q ss_pred CChhHHHhhcCCCCceeEEeeCC--CCCeeEEeCCCCC----------CCCceecceeCC-CCCeEEEEEeEEEeCCeee
Q 010129 253 TSVPSILANQGLIPNSFSMCFGS--DGTGRISFGDKGS----------PGQGETPFSLRQ-THPTYNITITQVSVGGNAV 319 (517)
Q Consensus 253 ~S~~~ql~~~g~i~~~FS~~l~~--~~~G~L~fGg~d~----------~~~~~tp~~~~~-~~~~y~v~l~~i~vg~~~~ 319 (517)
+|+++||..++.++++|||||.+ +..|.|+||+.+. ..+.+||++..+ ...+|.|+|++|+||++.+
T Consensus 136 lSl~sql~~~~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l 215 (362)
T cd05489 136 LSLPAQLASAFGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAV 215 (362)
T ss_pred cchHHHhhhhcCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEEC
Confidence 99999999876567999999987 3579999999874 256888888664 2468999999999999988
Q ss_pred ecc-----------CcEEEeccccceeecHHHHHHHHHHHHHhhhcccccCCCCCCcccccccCC---CCCCCCCCeEEE
Q 010129 320 NFE-----------FSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSP---NQTNFEYPVVNL 385 (517)
Q Consensus 320 ~~~-----------~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~---~~~~~~~P~i~~ 385 (517)
.++ .++||||||++++||+++|++|.++|.+++.............+.||.... ......+|+|+|
T Consensus 216 ~~~~~~~~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~ 295 (362)
T cd05489 216 PLNPTLSANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDL 295 (362)
T ss_pred CCCchhccccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEE
Confidence 653 379999999999999999999999999887653321111222378998642 111367999999
Q ss_pred EEcC-CccEEEcCCeeEEEeCCCCeeEEEEEEEeCC----CceeechhhhceeEEEEeCCCCEEEEEec
Q 010129 386 TMKG-GGPFFVNDPIVIVSSEPKGLYLYCLGVVKSD----NVNIIGQNFMTGYNIVFDREKNVLGWKAS 449 (517)
Q Consensus 386 ~f~g-g~~~~l~~~~~~~~~~~~~~~~~Cl~~~~~~----~~~IlG~~fl~~~yvvfD~~~~~iGfa~~ 449 (517)
+|+| |+++.|++++|++.... + .+|+++.... +.||||+.|||++|+|||++++|||||+.
T Consensus 296 ~f~g~g~~~~l~~~ny~~~~~~-~--~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 296 VLDGGGVNWTIFGANSMVQVKG-G--VACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred EEeCCCeEEEEcCCceEEEcCC-C--cEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 9976 79999999999887543 3 6799988653 37999999999999999999999999974
No 15
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=1.1e-48 Score=408.24 Aligned_cols=306 Identities=21% Similarity=0.339 Sum_probs=240.2
Q ss_pred CCceeec-ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCC
Q 010129 92 GNDTYRL-NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCN 169 (517)
Q Consensus 92 ~~~~~~~-~~~~~~Y~~~v~vGTP~Q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~ 169 (517)
.+..+++ ++.+..||++|+||||+|+|.|++||||+++||+|. |..| .| ..++.|||++|+|++..
T Consensus 126 ~~~~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~---~C------~~~~~yd~s~SsT~~~~--- 193 (453)
T PTZ00147 126 EFDNVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTE---GC------ETKNLYDSSKSKTYEKD--- 193 (453)
T ss_pred CCCeeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcc---cc------cCCCccCCccCcceEEC---
Confidence 3456677 788889999999999999999999999999999998 6432 22 23478999999999885
Q ss_pred CcccCCCCCCCCCCCCCceeEEeCCCCCeEEEEEEEEEEEeccCCCccceecceeeeeeeeeccCC--CCCCCCCceeEe
Q 010129 170 STLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGS--FLDGAAPNGLFG 247 (517)
Q Consensus 170 ~~~C~~~~~C~~~~~~~~~~~~Yg~dg~~~~G~~~~Dtl~~~~~~~~~~~~~~~~~fG~~~~~~g~--~~~~~~~dGilG 247 (517)
++.|++.| ++| .+.|.+++|+|+|++ ..++ ..|+|+.+..+. ++.....|||||
T Consensus 194 ---------------~~~f~i~Y-g~G-svsG~~~~DtVtiG~------~~v~-~qF~~~~~~~~f~~~~~~~~~DGILG 249 (453)
T PTZ00147 194 ---------------GTKVEMNY-VSG-TVSGFFSKDLVTIGN------LSVP-YKFIEVTDTNGFEPFYTESDFDGIFG 249 (453)
T ss_pred ---------------CCEEEEEe-CCC-CEEEEEEEEEEEECC------EEEE-EEEEEEEeccCcccccccccccceec
Confidence 78999999 566 589999999999984 3455 579998876542 223345799999
Q ss_pred eCCCCCC------hhHHHhhcCCC-CceeEEeeCC--CCCeeEEeCCCCCC-CCceecceeCCCCCeEEEEEeEEEeCCe
Q 010129 248 LGMDKTS------VPSILANQGLI-PNSFSMCFGS--DGTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGN 317 (517)
Q Consensus 248 Lg~~~~S------~~~ql~~~g~i-~~~FS~~l~~--~~~G~L~fGg~d~~-~~~~tp~~~~~~~~~y~v~l~~i~vg~~ 317 (517)
||++..+ ++.+|++||+| +++||+||.+ ...|.|+|||+|++ +.+.+.|.+.....+|.|.++ +.+++.
T Consensus 250 LG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~~~~~W~V~l~-~~vg~~ 328 (453)
T PTZ00147 250 LGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLNHDLYWQVDLD-VHFGNV 328 (453)
T ss_pred ccCCccccccCCCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcCCCceEEEEEE-EEECCE
Confidence 9998754 45689999999 8999999987 35799999999988 556666666666678999998 577764
Q ss_pred eeeccCcEEEeccccceeecHHHHHHHHHHHHHhhhcccccCCCCCCcccccccCCCCCCCCCCeEEEEEcCCccEEEcC
Q 010129 318 AVNFEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVND 397 (517)
Q Consensus 318 ~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~ 397 (517)
. .....+||||||+++++|+++++++.+++.+.. .... ..+...|+. ..+|+|+|+| +|..++|++
T Consensus 329 ~-~~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~----~~~~-~~y~~~C~~-------~~lP~~~f~f-~g~~~~L~p 394 (453)
T PTZ00147 329 S-SEKANVIVDSGTSVITVPTEFLNKFVESLDVFK----VPFL-PLYVTTCNN-------TKLPTLEFRS-PNKVYTLEP 394 (453)
T ss_pred e-cCceeEEECCCCchhcCCHHHHHHHHHHhCCee----cCCC-CeEEEeCCC-------CCCCeEEEEE-CCEEEEECH
Confidence 3 234679999999999999999999998885421 1011 112345653 4689999999 789999999
Q ss_pred CeeEEEeCC-CCeeEEEEE-EEeC---CCceeechhhhceeEEEEeCCCCEEEEEecC
Q 010129 398 PIVIVSSEP-KGLYLYCLG-VVKS---DNVNIIGQNFMTGYNIVFDREKNVLGWKASD 450 (517)
Q Consensus 398 ~~~~~~~~~-~~~~~~Cl~-~~~~---~~~~IlG~~fl~~~yvvfD~~~~~iGfa~~~ 450 (517)
++|+....+ .. ..|+. +... .+.||||+.|||++|+|||++++|||||+++
T Consensus 395 ~~yi~~~~~~~~--~~C~~~i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 395 EYYLQPIEDIGS--ALCMLNIIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred HHheeccccCCC--cEEEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 888764322 22 57964 5443 2479999999999999999999999999987
No 16
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=6.7e-49 Score=404.77 Aligned_cols=316 Identities=21% Similarity=0.296 Sum_probs=233.4
Q ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccCCCCCCCCC
Q 010129 103 FLHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSA 182 (517)
Q Consensus 103 ~~Y~~~v~vGTP~Q~~~v~vDTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~~C~~~ 182 (517)
..|+++|.||||+|+|.|++||||+++||+|. .|.. .++.|||++|+|++..
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~--~~~~----------~~~~f~~~~SsT~~~~---------------- 53 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAA--PHPF----------IHTYFHRELSSTYRDL---------------- 53 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcC--CCcc----------ccccCCchhCcCcccC----------------
Confidence 46999999999999999999999999999998 2311 1278999999999986
Q ss_pred CCCCceeEEeCCCCCeEEEEEEEEEEEeccCCCccceecceeeeeeeeeccCCCCCCCCCceeEeeCCCCCC--------
Q 010129 183 GSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTS-------- 254 (517)
Q Consensus 183 ~~~~~~~~~Yg~dg~~~~G~~~~Dtl~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGilGLg~~~~S-------- 254 (517)
.|.|+++| ++| .+.|.+++|+|+|++.. ... ..+.|++.+...+.+......|||||||+..++
T Consensus 54 --~~~~~i~Y-g~G-s~~G~~~~D~v~ig~~~---~~~-~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~ 125 (364)
T cd05473 54 --GKGVTVPY-TQG-SWEGELGTDLVSIPKGP---NVT-FRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEP 125 (364)
T ss_pred --CceEEEEE-Ccc-eEEEEEEEEEEEECCCC---ccc-eEEeeEEEeccccceecccccceeeeecccccccCCCCCCC
Confidence 78999999 566 56899999999998421 111 123456666555544444456999999997653
Q ss_pred hhHHHhhcCCCCceeEEeeCC-----------CCCeeEEeCCCCCC-CCceecceeCCCCCeEEEEEeEEEeCCeeeecc
Q 010129 255 VPSILANQGLIPNSFSMCFGS-----------DGTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVNFE 322 (517)
Q Consensus 255 ~~~ql~~~g~i~~~FS~~l~~-----------~~~G~L~fGg~d~~-~~~~tp~~~~~~~~~y~v~l~~i~vg~~~~~~~ 322 (517)
+..+|.+|+.+.++||+||.. ...|.|+||++|++ +.+.+.|++.....+|.|.+++|+|+++.+..+
T Consensus 126 ~~~~l~~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~~~~~v~l~~i~vg~~~~~~~ 205 (364)
T cd05473 126 FFDSLVKQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIREEWYYEVIILKLEVGGQSLNLD 205 (364)
T ss_pred HHHHHHhccCCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCcceeEEEEEEEEEECCEecccc
Confidence 456888888887799998742 13699999999987 444444444444578999999999999988653
Q ss_pred ------CcEEEeccccceeecHHHHHHHHHHHHHhhhcccccCCC-CCCcccccccCCCCCCCCCCeEEEEEcCC-----
Q 010129 323 ------FSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTS-DLPFEYCYVLSPNQTNFEYPVVNLTMKGG----- 390 (517)
Q Consensus 323 ------~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~C~~~~~~~~~~~~P~i~~~f~gg----- 390 (517)
..+||||||++++||+++|++|.+++.++.......... ......|+.... .....+|+|+|+|+|+
T Consensus 206 ~~~~~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~-~~~~~~P~i~~~f~g~~~~~~ 284 (364)
T cd05473 206 CKEYNYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGT-TPWEIFPKISIYLRDENSSQS 284 (364)
T ss_pred cccccCccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccC-chHhhCCcEEEEEccCCCCce
Confidence 269999999999999999999999998875422111000 011246876431 1113699999999642
Q ss_pred ccEEEcCCeeEEEeCCCCeeEEEEEE--EeCCCceeechhhhceeEEEEeCCCCEEEEEecCCCCCC
Q 010129 391 GPFFVNDPIVIVSSEPKGLYLYCLGV--VKSDNVNIIGQNFMTGYNIVFDREKNVLGWKASDCYGVN 455 (517)
Q Consensus 391 ~~~~l~~~~~~~~~~~~~~~~~Cl~~--~~~~~~~IlG~~fl~~~yvvfD~~~~~iGfa~~~c~~~~ 455 (517)
..+.|+++.|+...........|+++ ....+.||||+.|||++|+|||++++|||||+++|.+..
T Consensus 285 ~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~~~~ 351 (364)
T cd05473 285 FRITILPQLYLRPVEDHGTQLDCYKFAISQSTNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCAEHD 351 (364)
T ss_pred EEEEECHHHhhhhhccCCCcceeeEEeeecCCCceEEeeeeEcceEEEEECCCCEEeeEeccccccc
Confidence 36788877776643211001569753 333457999999999999999999999999999998754
No 17
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=2.2e-48 Score=385.16 Aligned_cols=258 Identities=36% Similarity=0.723 Sum_probs=214.0
Q ss_pred eEEEEEEecCCCeEEEEEEeCCCCceeEecC--CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccCCCCCCCC
Q 010129 104 LHYTNVSVGQPALSFIVALDTGSDLFWLPCD--CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPS 181 (517)
Q Consensus 104 ~Y~~~v~vGTP~Q~~~v~vDTGS~~~Wv~~~--C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~~C~~ 181 (517)
.|+++|.||||+|++.|++||||+++||+|. |..|
T Consensus 2 ~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c------------------------------------------- 38 (273)
T cd05475 2 YYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC------------------------------------------- 38 (273)
T ss_pred ceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC-------------------------------------------
Confidence 5899999999999999999999999999984 3222
Q ss_pred CCCCCceeEEeCCCCCeEEEEEEEEEEEeccCCCccceecceeeeeeeeeccCCCC-CCCCCceeEeeCCCCCChhHHHh
Q 010129 182 AGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFL-DGAAPNGLFGLGMDKTSVPSILA 260 (517)
Q Consensus 182 ~~~~~~~~~~Yg~dg~~~~G~~~~Dtl~~~~~~~~~~~~~~~~~fG~~~~~~g~~~-~~~~~dGilGLg~~~~S~~~ql~ 260 (517)
.|.|+++| +|++.+.|.+++|+|+|+..++ ....+++.|||+..+.+.+. .....|||||||+...++++||+
T Consensus 39 ---~c~~~i~Y-gd~~~~~G~~~~D~v~~~~~~~--~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~ 112 (273)
T cd05475 39 ---QCDYEIEY-ADGGSSMGVLVTDIFSLKLTNG--SRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLA 112 (273)
T ss_pred ---cCccEeEe-CCCCceEEEEEEEEEEEeecCC--CcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHH
Confidence 47899999 6788999999999999975331 34568999999987765432 33456899999999999999999
Q ss_pred hcCCCCceeEEeeCCCCCeeEEeCCCCCC--CCceecceeCCCCCeEEEEEeEEEeCCeeeec-cCcEEEeccccceeec
Q 010129 261 NQGLIPNSFSMCFGSDGTGRISFGDKGSP--GQGETPFSLRQTHPTYNITITQVSVGGNAVNF-EFSAIFDSGTSFTYLN 337 (517)
Q Consensus 261 ~~g~i~~~FS~~l~~~~~G~L~fGg~d~~--~~~~tp~~~~~~~~~y~v~l~~i~vg~~~~~~-~~~~iiDSGTt~~~lp 337 (517)
++++|+++||+||.++..|.|+||+.... .+.++|+.......+|.|++++|+||++.+.. ...+||||||++++||
T Consensus 113 ~~~~i~~~Fs~~l~~~~~g~l~~G~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp 192 (273)
T cd05475 113 SQGIIKNVIGHCLSSNGGGFLFFGDDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFN 192 (273)
T ss_pred hcCCcCceEEEEccCCCCeEEEECCCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEECcCCCceEEEECCCceEEcC
Confidence 99988899999999866799999964322 46677776554456899999999999986543 3579999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCCCCcccccccCCCCCCCCCCeEEEEEcCC---ccEEEcCCeeEEEeCCCCeeEEEE
Q 010129 338 DPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGG---GPFFVNDPIVIVSSEPKGLYLYCL 414 (517)
Q Consensus 338 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg---~~~~l~~~~~~~~~~~~~~~~~Cl 414 (517)
+++| +|+|+|+|+++ ++++|++++|++...++ ..|+
T Consensus 193 ~~~y--------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~~---~~Cl 231 (273)
T cd05475 193 AQAY--------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEKG---NVCL 231 (273)
T ss_pred Cccc--------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCCC---CEEE
Confidence 9875 47899999443 79999999888764433 5799
Q ss_pred EEEeCC-----CceeechhhhceeEEEEeCCCCEEEEEecCC
Q 010129 415 GVVKSD-----NVNIIGQNFMTGYNIVFDREKNVLGWKASDC 451 (517)
Q Consensus 415 ~~~~~~-----~~~IlG~~fl~~~yvvfD~~~~~iGfa~~~c 451 (517)
+++... +.||||+.|||++|+|||++++|||||+++|
T Consensus 232 ~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 232 GILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred EEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 988643 3799999999999999999999999999999
No 18
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=8.8e-48 Score=400.65 Aligned_cols=305 Identities=21% Similarity=0.329 Sum_probs=235.8
Q ss_pred Cceeec-ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCC
Q 010129 93 NDTYRL-NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNS 170 (517)
Q Consensus 93 ~~~~~~-~~~~~~Y~~~v~vGTP~Q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~ 170 (517)
+..+++ ++.+.+||++|.||||+|+|.|++||||+++||+|. |.. ..| ..++.|||++|+|++..
T Consensus 126 ~~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~---~~C------~~~~~yd~s~SsT~~~~---- 192 (450)
T PTZ00013 126 NDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDS---IGC------SIKNLYDSSKSKSYEKD---- 192 (450)
T ss_pred CCceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCc---ccc------ccCCCccCccCcccccC----
Confidence 345666 777889999999999999999999999999999998 642 222 23378999999999884
Q ss_pred cccCCCCCCCCCCCCCceeEEeCCCCCeEEEEEEEEEEEeccCCCccceecceeeeeeeeeccC--CCCCCCCCceeEee
Q 010129 171 TLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTG--SFLDGAAPNGLFGL 248 (517)
Q Consensus 171 ~~C~~~~~C~~~~~~~~~~~~Yg~dg~~~~G~~~~Dtl~~~~~~~~~~~~~~~~~fG~~~~~~g--~~~~~~~~dGilGL 248 (517)
+|.|.+.| ++|+ +.|.+++|+|+|++ ..++ ..|+++.+..+ ..+.....||||||
T Consensus 193 --------------~~~~~i~Y-G~Gs-v~G~~~~Dtv~iG~------~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGL 249 (450)
T PTZ00013 193 --------------GTKVDITY-GSGT-VKGFFSKDLVTLGH------LSMP-YKFIEVTDTDDLEPIYSSSEFDGILGL 249 (450)
T ss_pred --------------CcEEEEEE-CCce-EEEEEEEEEEEECC------EEEc-cEEEEEEeccccccceecccccceecc
Confidence 78999999 5654 89999999999984 3444 57888876542 22233456999999
Q ss_pred CCCCC------ChhHHHhhcCCC-CceeEEeeCC--CCCeeEEeCCCCCC-CCceecceeCCCCCeEEEEEeEEEeCCee
Q 010129 249 GMDKT------SVPSILANQGLI-PNSFSMCFGS--DGTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNA 318 (517)
Q Consensus 249 g~~~~------S~~~ql~~~g~i-~~~FS~~l~~--~~~G~L~fGg~d~~-~~~~tp~~~~~~~~~y~v~l~~i~vg~~~ 318 (517)
|+... +++.+|++||+| +++||+||.+ ...|.|+|||+|++ +.+.+.|++.....+|.|.++ +.+|...
T Consensus 250 g~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~~~~yW~I~l~-v~~G~~~ 328 (450)
T PTZ00013 250 GWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQT 328 (450)
T ss_pred cCCccccccCCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcCcCceEEEEEE-EEECcee
Confidence 99865 456799999999 8999999986 34799999999988 556666666666678999998 6776543
Q ss_pred eeccCcEEEeccccceeecHHHHHHHHHHHHHhhhcccccCCCCCCcccccccCCCCCCCCCCeEEEEEcCCccEEEcCC
Q 010129 319 VNFEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDP 398 (517)
Q Consensus 319 ~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~ 398 (517)
.....+||||||+++++|+++++++.+++.... .... ..+...|+. ..+|+|+|+| +|.+++|+++
T Consensus 329 -~~~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~----~~~~-~~y~~~C~~-------~~lP~i~F~~-~g~~~~L~p~ 394 (450)
T PTZ00013 329 -MQKANVIVDSGTTTITAPSEFLNKFFANLNVIK----VPFL-PFYVTTCDN-------KEMPTLEFKS-ANNTYTLEPE 394 (450)
T ss_pred -ccccceEECCCCccccCCHHHHHHHHHHhCCee----cCCC-CeEEeecCC-------CCCCeEEEEE-CCEEEEECHH
Confidence 235679999999999999999998888775321 1001 112334542 4689999999 7899999988
Q ss_pred eeEEEeC-CCCeeEEEEE-EEeC---CCceeechhhhceeEEEEeCCCCEEEEEecC
Q 010129 399 IVIVSSE-PKGLYLYCLG-VVKS---DNVNIIGQNFMTGYNIVFDREKNVLGWKASD 450 (517)
Q Consensus 399 ~~~~~~~-~~~~~~~Cl~-~~~~---~~~~IlG~~fl~~~yvvfD~~~~~iGfa~~~ 450 (517)
+|+.... .+. ..|+. +.+. .+.||||+.|||++|+|||++++|||||+++
T Consensus 395 ~Yi~~~~~~~~--~~C~~~i~~~~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 395 YYMNPLLDVDD--TLCMITMLPVDIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred HheehhccCCC--CeeEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 7775421 222 46964 4432 2479999999999999999999999999976
No 19
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=1.7e-47 Score=380.16 Aligned_cols=264 Identities=22% Similarity=0.352 Sum_probs=216.8
Q ss_pred EEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccCCCCCCCCCC
Q 010129 105 HYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSAG 183 (517)
Q Consensus 105 Y~~~v~vGTP~Q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~~C~~~~ 183 (517)
|+++|+||||+|++.|++||||+++||+|. |..|..+. +..|||++|+|++..
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~---------~~~y~~~~Sst~~~~----------------- 54 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGG---------HKLYDPSKSSTAKLL----------------- 54 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhcc---------CCcCCCccCccceec-----------------
Confidence 789999999999999999999999999999 87775432 377999999999875
Q ss_pred CCCceeEEeCCCCCeEEEEEEEEEEEeccCCCccceecceeeeeeeeeccCCCCCCCCCceeEeeCCCCCC---------
Q 010129 184 SNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTS--------- 254 (517)
Q Consensus 184 ~~~~~~~~Yg~dg~~~~G~~~~Dtl~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGilGLg~~~~S--------- 254 (517)
+.|.|.+.| ++|+.+.|.+++|+|+|+ ...++++.|||++...+.++.....+||||||+...+
T Consensus 55 ~~~~~~i~Y-~~G~~~~G~~~~D~v~ig------~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~ 127 (278)
T cd06097 55 PGATWSISY-GDGSSASGIVYTDTVSIG------GVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKT 127 (278)
T ss_pred CCcEEEEEe-CCCCeEEEEEEEEEEEEC------CEEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCC
Confidence 368999999 688889999999999998 3568899999999887644454567999999997643
Q ss_pred hhHHHhhcCCCCceeEEeeCCCCCeeEEeCCCCCC-CCceecceeCCC-CCeEEEEEeEEEeCCeeee--ccCcEEEecc
Q 010129 255 VPSILANQGLIPNSFSMCFGSDGTGRISFGDKGSP-GQGETPFSLRQT-HPTYNITITQVSVGGNAVN--FEFSAIFDSG 330 (517)
Q Consensus 255 ~~~ql~~~g~i~~~FS~~l~~~~~G~L~fGg~d~~-~~~~tp~~~~~~-~~~y~v~l~~i~vg~~~~~--~~~~~iiDSG 330 (517)
+..+|.+++. +++||+||.++..|+|+|||+|++ +.+.+.|++... ..+|.|++++|.|+++... ....+|||||
T Consensus 128 ~~~~l~~~~~-~~~Fs~~l~~~~~G~l~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~~~~~~~~iiDSG 206 (278)
T cd06097 128 FFENALSSLD-APLFTADLRKAAPGFYTFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPWSRSGFSAIADTG 206 (278)
T ss_pred HHHHHHHhcc-CceEEEEecCCCCcEEEEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCcceeecCCceEEeecC
Confidence 4567887765 899999999767899999999987 556666666544 5789999999999998432 3578999999
Q ss_pred ccceeecHHHHHHHHHHHHHhhhcccccCCCCCCcccccccCCCCCCCCCCeEEEEEcCCccEEEcCCeeEEEeCCCCee
Q 010129 331 TSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLY 410 (517)
Q Consensus 331 Tt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~~ 410 (517)
|+++++|++++++|.+++.... . + ....+|.++|+. .+|+|+|+|
T Consensus 207 Ts~~~lP~~~~~~l~~~l~g~~----~--~---~~~~~~~~~C~~---~~P~i~f~~----------------------- 251 (278)
T cd06097 207 TTLILLPDAIVEAYYSQVPGAY----Y--D---SEYGGWVFPCDT---TLPDLSFAV----------------------- 251 (278)
T ss_pred CchhcCCHHHHHHHHHhCcCCc----c--c---CCCCEEEEECCC---CCCCEEEEE-----------------------
Confidence 9999999999999888873211 1 0 112356677753 289999998
Q ss_pred EEEEEEEeCCCceeechhhhceeEEEEeCCCCEEEEEe
Q 010129 411 LYCLGVVKSDNVNIIGQNFMTGYNIVFDREKNVLGWKA 448 (517)
Q Consensus 411 ~~Cl~~~~~~~~~IlG~~fl~~~yvvfD~~~~~iGfa~ 448 (517)
.||||++|||++|+|||++++|||||+
T Consensus 252 -----------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 -----------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred -----------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 599999999999999999999999995
No 20
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=3.4e-46 Score=368.19 Aligned_cols=244 Identities=31% Similarity=0.610 Sum_probs=209.4
Q ss_pred eEEEEEEecCCCeEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccCCCCCCCCCC
Q 010129 104 LHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSAG 183 (517)
Q Consensus 104 ~Y~~~v~vGTP~Q~~~v~vDTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~~C~~~~ 183 (517)
+|+++|+||||+|++.|++||||+++||+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-------------------------------------------------- 30 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-------------------------------------------------- 30 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC--------------------------------------------------
Confidence 489999999999999999999999999975
Q ss_pred CCCceeEEeCCCCCeEEEEEEEEEEEeccCCCccceecceeeeeeeeeccCCCCCCCCCceeEeeCCCCCChhHHHhhcC
Q 010129 184 SNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSILANQG 263 (517)
Q Consensus 184 ~~~~~~~~Yg~dg~~~~G~~~~Dtl~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGilGLg~~~~S~~~ql~~~g 263 (517)
|.|.+.| +|++.+.|.+++|+|+|++.+ ..++++.|||++.+.+ + .....+||||||+...|+++||+.++
T Consensus 31 --~~~~~~Y-~dg~~~~G~~~~D~v~~g~~~----~~~~~~~Fg~~~~~~~-~-~~~~~~GIlGLg~~~~s~~~ql~~~~ 101 (265)
T cd05476 31 --CSYEYSY-GDGSSTSGVLATETFTFGDSS----VSVPNVAFGCGTDNEG-G-SFGGADGILGLGRGPLSLVSQLGSTG 101 (265)
T ss_pred --CceEeEe-CCCceeeeeEEEEEEEecCCC----CccCCEEEEecccccC-C-ccCCCCEEEECCCCcccHHHHhhccc
Confidence 3578999 688999999999999998531 2578999999998876 2 33456899999999999999999886
Q ss_pred CCCceeEEeeCC----CCCeeEEeCCCCCC---CCceecceeCC-CCCeEEEEEeEEEeCCeeeec-----------cCc
Q 010129 264 LIPNSFSMCFGS----DGTGRISFGDKGSP---GQGETPFSLRQ-THPTYNITITQVSVGGNAVNF-----------EFS 324 (517)
Q Consensus 264 ~i~~~FS~~l~~----~~~G~L~fGg~d~~---~~~~tp~~~~~-~~~~y~v~l~~i~vg~~~~~~-----------~~~ 324 (517)
++||+||.+ +..|+|+||++|+. ...++|++..+ ...+|.|++++|+|+++.+.+ ...
T Consensus 102 ---~~Fs~~l~~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ 178 (265)
T cd05476 102 ---NKFSYCLVPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGG 178 (265)
T ss_pred ---CeeEEEccCCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCc
Confidence 899999986 34799999999984 56777776543 246899999999999998752 356
Q ss_pred EEEeccccceeecHHHHHHHHHHHHHhhhcccccCCCCCCcccccccCCCCCCCCCCeEEEEEcCCccEEEcCCeeEEEe
Q 010129 325 AIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSS 404 (517)
Q Consensus 325 ~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~ 404 (517)
+||||||++++||+++| |+|+|+|.+|.++.+++++|++..
T Consensus 179 ai~DTGTs~~~lp~~~~---------------------------------------P~i~~~f~~~~~~~i~~~~y~~~~ 219 (265)
T cd05476 179 TIIDSGTTLTYLPDPAY---------------------------------------PDLTLHFDGGADLELPPENYFVDV 219 (265)
T ss_pred EEEeCCCcceEcCcccc---------------------------------------CCEEEEECCCCEEEeCcccEEEEC
Confidence 99999999999998876 679999955899999999888754
Q ss_pred CCCCeeEEEEEEEeC--CCceeechhhhceeEEEEeCCCCEEEEEecCC
Q 010129 405 EPKGLYLYCLGVVKS--DNVNIIGQNFMTGYNIVFDREKNVLGWKASDC 451 (517)
Q Consensus 405 ~~~~~~~~Cl~~~~~--~~~~IlG~~fl~~~yvvfD~~~~~iGfa~~~c 451 (517)
..+ .+|+++... .+.||||++|||++|+|||++++|||||+++|
T Consensus 220 ~~~---~~C~~~~~~~~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 220 GEG---VVCLAILSSSSGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred CCC---CEEEEEecCCCCCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 333 579998876 45899999999999999999999999999999
No 21
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=2.6e-44 Score=360.44 Aligned_cols=263 Identities=25% Similarity=0.464 Sum_probs=215.7
Q ss_pred eEEEEEEecCCCeEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccCCCCCCCCCC
Q 010129 104 LHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSAG 183 (517)
Q Consensus 104 ~Y~~~v~vGTP~Q~~~v~vDTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~~C~~~~ 183 (517)
.|+++|.||||+|++.|++||||+++||+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~--------------------------------------------------- 30 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP--------------------------------------------------- 30 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee---------------------------------------------------
Confidence 58899999999999999999999999996
Q ss_pred CCCceeEEeCCCCCeEEEEEEEEEEEeccCCCccceecceeeeeeeeeccCCCCCCCCCceeEeeCCCCC----------
Q 010129 184 SNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT---------- 253 (517)
Q Consensus 184 ~~~~~~~~Yg~dg~~~~G~~~~Dtl~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGilGLg~~~~---------- 253 (517)
.|++.| ++++.+.|.+++|+|+|++ ..++++.|||++... ..+||||||+...
T Consensus 31 ---~~~~~Y-~~g~~~~G~~~~D~v~~g~------~~~~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~~~~ 93 (295)
T cd05474 31 ---DFSISY-GDGTSASGTWGTDTVSIGG------ATVKNLQFAVANSTS-------SDVGVLGIGLPGNEATYGTGYTY 93 (295)
T ss_pred ---eeEEEe-ccCCcEEEEEEEEEEEECC------eEecceEEEEEecCC-------CCcceeeECCCCCcccccCCCcC
Confidence 267889 6888999999999999984 467899999999742 3479999999876
Q ss_pred -ChhHHHhhcCCC-CceeEEeeCC--CCCeeEEeCCCCCC----CCceecceeCCC---CCeEEEEEeEEEeCCeeee--
Q 010129 254 -SVPSILANQGLI-PNSFSMCFGS--DGTGRISFGDKGSP----GQGETPFSLRQT---HPTYNITITQVSVGGNAVN-- 320 (517)
Q Consensus 254 -S~~~ql~~~g~i-~~~FS~~l~~--~~~G~L~fGg~d~~----~~~~tp~~~~~~---~~~y~v~l~~i~vg~~~~~-- 320 (517)
+++.||+++|+| +++||+||.+ +..|.|+||++|.. ...++|++.... ..+|.|++++|+++++.+.
T Consensus 94 ~s~~~~L~~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~ 173 (295)
T cd05474 94 PNFPIALKKQGLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTT 173 (295)
T ss_pred CCHHHHHHHCCcccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCccc
Confidence 688999999999 8999999998 35799999999976 345556654432 2679999999999998753
Q ss_pred ---ccCcEEEeccccceeecHHHHHHHHHHHHHhhhcccccCCCCCCcccccccCCCCCCCCCCeEEEEEcCCccEEEcC
Q 010129 321 ---FEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVND 397 (517)
Q Consensus 321 ---~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~ 397 (517)
....++|||||++++||++++++|.+++.+..... ...+...|+.. .+ |.|+|+| +|.++.||+
T Consensus 174 ~~~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~~-----~~~~~~~C~~~------~~-p~i~f~f-~g~~~~i~~ 240 (295)
T cd05474 174 LLSKNLPALLDSGTTLTYLPSDIVDAIAKQLGATYDSD-----EGLYVVDCDAK------DD-GSLTFNF-GGATISVPL 240 (295)
T ss_pred ccCCCccEEECCCCccEeCCHHHHHHHHHHhCCEEcCC-----CcEEEEeCCCC------CC-CEEEEEE-CCeEEEEEH
Confidence 24679999999999999999999999997664321 12233455543 23 9999999 789999998
Q ss_pred CeeEEEeCC---CCeeEEE-EEEEeCC-CceeechhhhceeEEEEeCCCCEEEEEec
Q 010129 398 PIVIVSSEP---KGLYLYC-LGVVKSD-NVNIIGQNFMTGYNIVFDREKNVLGWKAS 449 (517)
Q Consensus 398 ~~~~~~~~~---~~~~~~C-l~~~~~~-~~~IlG~~fl~~~yvvfD~~~~~iGfa~~ 449 (517)
++|++.... .. .+| +++.... +.||||++|||++|++||++++|||||++
T Consensus 241 ~~~~~~~~~~~~~~--~~C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 241 SDLVLPASTDDGGD--GACYLGIQPSTSDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred HHhEeccccCCCCC--CCeEEEEEeCCCCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 888776432 22 569 4666655 58999999999999999999999999985
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=3.8e-45 Score=369.90 Aligned_cols=297 Identities=28% Similarity=0.506 Sum_probs=239.2
Q ss_pred eEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccCCCCCCCCC
Q 010129 104 LHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSA 182 (517)
Q Consensus 104 ~Y~~~v~vGTP~Q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~~C~~~ 182 (517)
.|+++|.||||+|++.|++||||+.+||++. |..|. .| .....|++++|+|++..
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~--~~------~~~~~y~~~~S~t~~~~---------------- 56 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCS--SC------ASSGFYNPSKSSTFSNQ---------------- 56 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHT--HH------CTSC-BBGGGSTTEEEE----------------
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceecccccc--cc------ccccccccccccccccc----------------
Confidence 4999999999999999999999999999988 76661 11 12378999999999986
Q ss_pred CCCCceeEEeCCCCCeEEEEEEEEEEEeccCCCccceecceeeeeeeeeccCCCCCCCCCceeEeeCCCC-------CCh
Q 010129 183 GSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDK-------TSV 255 (517)
Q Consensus 183 ~~~~~~~~~Yg~dg~~~~G~~~~Dtl~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGilGLg~~~-------~S~ 255 (517)
.+.+.+.| +++. ++|.+++|+|+|+ ...+.++.||++....+..+.....+||||||+.. .++
T Consensus 57 --~~~~~~~y-~~g~-~~G~~~~D~v~ig------~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~ 126 (317)
T PF00026_consen 57 --GKPFSISY-GDGS-VSGNLVSDTVSIG------GLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTF 126 (317)
T ss_dssp --EEEEEEEE-TTEE-EEEEEEEEEEEET------TEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SH
T ss_pred --eeeeeeec-cCcc-cccccccceEeee------eccccccceeccccccccccccccccccccccCCcccccccCCcc
Confidence 67899999 6666 9999999999998 45778899999998655433334568999999743 578
Q ss_pred hHHHhhcCCC-CceeEEeeCCC--CCeeEEeCCCCCC-CCceecceeCCCCCeEEEEEeEEEeCCeee-e-ccCcEEEec
Q 010129 256 PSILANQGLI-PNSFSMCFGSD--GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAV-N-FEFSAIFDS 329 (517)
Q Consensus 256 ~~ql~~~g~i-~~~FS~~l~~~--~~G~L~fGg~d~~-~~~~tp~~~~~~~~~y~v~l~~i~vg~~~~-~-~~~~~iiDS 329 (517)
+.+|+++|+| +++||++|.+. ..|.|+|||+|++ +.+.+.|++.....+|.|.+++|.++++.. . .+..++|||
T Consensus 127 ~~~l~~~g~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~~~~~w~v~~~~i~i~~~~~~~~~~~~~~~Dt 206 (317)
T PF00026_consen 127 LDQLVQQGLISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLVSSGYWSVPLDSISIGGESVFSSSGQQAILDT 206 (317)
T ss_dssp HHHHHHTTSSSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBSSTTTTEEEEEEEEETTEEEEEEEEEEEEEET
T ss_pred eecchhhccccccccceeeeecccccchheeeccccccccCceeccCcccccccccccccccccccccccccceeeeccc
Confidence 8899999999 99999999984 4799999999988 556666666667778999999999999833 2 236899999
Q ss_pred cccceeecHHHHHHHHHHHHHhhhcccccCCCCCCcccccccCCCCCCCCCCeEEEEEcCCccEEEcCCeeEEEeCCCCe
Q 010129 330 GTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGL 409 (517)
Q Consensus 330 GTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~ 409 (517)
|+++++||.+++++|++++...... .+|.++|+.. ..+|.++|+| ++.+++|+++.|+.......
T Consensus 207 gt~~i~lp~~~~~~i~~~l~~~~~~------------~~~~~~c~~~-~~~p~l~f~~-~~~~~~i~~~~~~~~~~~~~- 271 (317)
T PF00026_consen 207 GTSYIYLPRSIFDAIIKALGGSYSD------------GVYSVPCNST-DSLPDLTFTF-GGVTFTIPPSDYIFKIEDGN- 271 (317)
T ss_dssp TBSSEEEEHHHHHHHHHHHTTEEEC------------SEEEEETTGG-GGSEEEEEEE-TTEEEEEEHHHHEEEESSTT-
T ss_pred ccccccccchhhHHHHhhhcccccc------------eeEEEecccc-cccceEEEee-CCEEEEecchHhcccccccc-
Confidence 9999999999999999999766332 2444555433 5789999999 78999999988877655432
Q ss_pred eEEEEEEEeC------CCceeechhhhceeEEEEeCCCCEEEEEec
Q 010129 410 YLYCLGVVKS------DNVNIIGQNFMTGYNIVFDREKNVLGWKAS 449 (517)
Q Consensus 410 ~~~Cl~~~~~------~~~~IlG~~fl~~~yvvfD~~~~~iGfa~~ 449 (517)
...|...+.. .+.+|||.+|||++|+|||+|++|||||++
T Consensus 272 ~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 272 GGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp SSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred cceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 1479544332 248999999999999999999999999985
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=2.2e-42 Score=343.74 Aligned_cols=264 Identities=29% Similarity=0.531 Sum_probs=215.6
Q ss_pred EEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccCCCCCCCCCC
Q 010129 105 HYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSAG 183 (517)
Q Consensus 105 Y~~~v~vGTP~Q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~~C~~~~ 183 (517)
|+++|.||||+|++.|++||||+++||+|. |..|..+.+. ...|++..|+++..
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~-------~~~~~~~~s~~~~~------------------ 55 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHP-------RFKYDSSKSSTYKD------------------ 55 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCC-------CCccCccCCceeec------------------
Confidence 789999999999999999999999999999 8777654421 11378888877766
Q ss_pred CCCceeEEeCCCCCeEEEEEEEEEEEeccCCCccceecceeeeeeeeeccCCCCCCCCCceeEeeCCCC------CChhH
Q 010129 184 SNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDK------TSVPS 257 (517)
Q Consensus 184 ~~~~~~~~Yg~dg~~~~G~~~~Dtl~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGilGLg~~~------~S~~~ 257 (517)
..|.|++.| ++ +.+.|.+++|+|+|++ ..++++.|||++...+.+ .....+||||||+.. .+++.
T Consensus 56 ~~~~~~~~Y-~~-g~~~g~~~~D~v~~~~------~~~~~~~fg~~~~~~~~~-~~~~~~GilGLg~~~~~~~~~~s~~~ 126 (283)
T cd05471 56 TGCTFSITY-GD-GSVTGGLGTDTVTIGG------LTIPNQTFGCATSESGDF-SSSGFDGILGLGFPSLSVDGVPSFFD 126 (283)
T ss_pred CCCEEEEEE-CC-CeEEEEEEEeEEEECC------EEEeceEEEEEeccCCcc-cccccceEeecCCcccccccCCCHHH
Confidence 379999999 55 5789999999999984 347899999999887632 233568999999998 78999
Q ss_pred HHhhcCCC-CceeEEeeCCC----CCeeEEeCCCCCC----CCceecceeCCCCCeEEEEEeEEEeCCee--e-eccCcE
Q 010129 258 ILANQGLI-PNSFSMCFGSD----GTGRISFGDKGSP----GQGETPFSLRQTHPTYNITITQVSVGGNA--V-NFEFSA 325 (517)
Q Consensus 258 ql~~~g~i-~~~FS~~l~~~----~~G~L~fGg~d~~----~~~~tp~~~~~~~~~y~v~l~~i~vg~~~--~-~~~~~~ 325 (517)
||.++++| +++||+||.+. ..|.|+||++|+. ...++|++.. ...+|.|.+++|.|+++. . .....+
T Consensus 127 ~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~-~~~~~~v~l~~i~v~~~~~~~~~~~~~~ 205 (283)
T cd05471 127 QLKSQGLISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSN-GPGYWQVPLDGISVGGKSVISSSGGGGA 205 (283)
T ss_pred HHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCC-CCCEEEEEeCeEEECCceeeecCCCcEE
Confidence 99999998 99999999973 6899999999986 3455555443 256899999999999973 2 234679
Q ss_pred EEeccccceeecHHHHHHHHHHHHHhhhcccccCCCCCCcccccccCCCCCCCCCCeEEEEEcCCccEEEcCCeeEEEeC
Q 010129 326 IFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSE 405 (517)
Q Consensus 326 iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~ 405 (517)
+|||||++++||+++|++|.+++.+.... ...|+...|.. ...+|.|+|+|
T Consensus 206 iiDsGt~~~~lp~~~~~~l~~~~~~~~~~----------~~~~~~~~~~~-~~~~p~i~f~f------------------ 256 (283)
T cd05471 206 IVDSGTSLIYLPSSVYDAILKALGAAVSS----------SDGGYGVDCSP-CDTLPDITFTF------------------ 256 (283)
T ss_pred EEecCCCCEeCCHHHHHHHHHHhCCcccc----------cCCcEEEeCcc-cCcCCCEEEEE------------------
Confidence 99999999999999999999999877543 11233333322 26799999999
Q ss_pred CCCeeEEEEEEEeCCCceeechhhhceeEEEEeCCCCEEEEEe
Q 010129 406 PKGLYLYCLGVVKSDNVNIIGQNFMTGYNIVFDREKNVLGWKA 448 (517)
Q Consensus 406 ~~~~~~~Cl~~~~~~~~~IlG~~fl~~~yvvfD~~~~~iGfa~ 448 (517)
.+|||++|||++|++||+++++||||+
T Consensus 257 ----------------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 ----------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred ----------------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 589999999999999999999999985
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.97 E-value=1e-30 Score=238.28 Aligned_cols=157 Identities=38% Similarity=0.757 Sum_probs=129.2
Q ss_pred EEEEEEecCCCeEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccCCCC----CCC
Q 010129 105 HYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQK----QCP 180 (517)
Q Consensus 105 Y~~~v~vGTP~Q~~~v~vDTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~----~C~ 180 (517)
|+++|.||||+|++.|++||||+++|++|. . +.|+|++|+||+.++|+++.|.... .|.
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C~-----------~------~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~ 63 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQCP-----------D------PPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCC 63 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET---------------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCT
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcCC-----------C------cccCCccCCcccccCCCCcchhhcccccccCC
Confidence 899999999999999999999999999982 1 8899999999999999999998642 456
Q ss_pred CCCCCCceeEEeCCCCCeEEEEEEEEEEEeccCCCccceecceeeeeeeeeccCCCCCCCCCceeEeeCCCCCChhHHHh
Q 010129 181 SAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSILA 260 (517)
Q Consensus 181 ~~~~~~~~~~~Yg~dg~~~~G~~~~Dtl~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGilGLg~~~~S~~~ql~ 260 (517)
..++.|.|.+.| .|++.+.|.+++|+|+++..++. ...+.++.|||++...|.+. ..+||||||++++||++||+
T Consensus 64 ~~~~~C~y~~~y-~~~s~~~G~l~~D~~~~~~~~~~-~~~~~~~~FGC~~~~~g~~~---~~~GilGLg~~~~Sl~sQl~ 138 (164)
T PF14543_consen 64 CSNNSCPYSQSY-GDGSSSSGFLASDTLTFGSSSGG-SNSVPDFIFGCATSNSGLFY---GADGILGLGRGPLSLPSQLA 138 (164)
T ss_dssp CESSEEEEEEEE-TTTEEEEEEEEEEEEEEEEESSS-SEEEEEEEEEEE-GGGTSST---TEEEEEE-SSSTTSHHHHHH
T ss_pred CCcCcccceeec-CCCccccCceEEEEEEecCCCCC-CceeeeEEEEeeeccccCCc---CCCcccccCCCcccHHHHHH
Confidence 667789999999 78999999999999999875432 25678999999999987654 45899999999999999998
Q ss_pred hcCCCCceeEEeeCC---CCCeeEEeCC
Q 010129 261 NQGLIPNSFSMCFGS---DGTGRISFGD 285 (517)
Q Consensus 261 ~~g~i~~~FS~~l~~---~~~G~L~fGg 285 (517)
++ ..++|||||.+ +..|.|+||+
T Consensus 139 ~~--~~~~FSyCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 139 SS--SGNKFSYCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp HH----SEEEEEB-S-SSSSEEEEEECS
T ss_pred Hh--cCCeEEEECCCCCCCCCEEEEeCc
Confidence 87 57999999998 5689999996
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.91 E-value=6.5e-24 Score=193.28 Aligned_cols=142 Identities=30% Similarity=0.597 Sum_probs=111.9
Q ss_pred eEEEEEeEEEeCCeeeecc----------CcEEEeccccceeecHHHHHHHHHHHHHhhhccccc--CCCCCCccccccc
Q 010129 304 TYNITITQVSVGGNAVNFE----------FSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRET--STSDLPFEYCYVL 371 (517)
Q Consensus 304 ~y~v~l~~i~vg~~~~~~~----------~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~C~~~ 371 (517)
+|+|+|++|+||++++.++ ..+||||||++|+||+++|++|++++.+++...... ......++.||+.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 4999999999999999864 248999999999999999999999999998876421 2335578899999
Q ss_pred CC---CCCCCCCCeEEEEEcCCccEEEcCCeeEEEeCCCCeeEEEEEEEeC----CCceeechhhhceeEEEEeCCCCEE
Q 010129 372 SP---NQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCLGVVKS----DNVNIIGQNFMTGYNIVFDREKNVL 444 (517)
Q Consensus 372 ~~---~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~~~~Cl~~~~~----~~~~IlG~~fl~~~yvvfD~~~~~i 444 (517)
+. ......+|+|+|||++|++++|+++.|++...+ + .+|+++..+ .+..|||+.+|++++++||++++||
T Consensus 81 ~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~-~--~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~i 157 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVSP-G--VFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRI 157 (161)
T ss_dssp GCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEECT-T--EEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEE
T ss_pred cccccccccccCCeEEEEEeCCcceeeeccceeeeccC-C--CEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEE
Confidence 86 245578999999998899999999888887664 3 799999888 3599999999999999999999999
Q ss_pred EEEe
Q 010129 445 GWKA 448 (517)
Q Consensus 445 Gfa~ 448 (517)
||+|
T Consensus 158 gF~~ 161 (161)
T PF14541_consen 158 GFAP 161 (161)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 9986
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.87 E-value=7.7e-22 Score=167.59 Aligned_cols=107 Identities=31% Similarity=0.558 Sum_probs=90.1
Q ss_pred EEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCC-CCCCCCCcccccCCCcccCCCCCCCCCCC
Q 010129 107 TNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIY-SPNTSSTSSKVPCNSTLCELQKQCPSAGS 184 (517)
Q Consensus 107 ~~v~vGTP~Q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~y-dp~~SsT~~~~~C~~~~C~~~~~C~~~~~ 184 (517)
++|.||||+|++.|++||||+++||+|. |..|..+.+ ..| +|++|+|++..
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~~---------~~~~~~~~sst~~~~------------------ 53 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYSH---------SSYDDPSASSTYSDN------------------ 53 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCcccccc---------cccCCcCCCCCCCCC------------------
Confidence 4799999999999999999999999999 876654432 445 99999999874
Q ss_pred CCceeEEeCCCCCeEEEEEEEEEEEeccCCCccceecceeeeeeeeeccCCCCCCCCCceeEee
Q 010129 185 NCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGL 248 (517)
Q Consensus 185 ~~~~~~~Yg~dg~~~~G~~~~Dtl~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGilGL 248 (517)
.|.|.+.| +++ .+.|.+++|+|+|++ ..++++.|||++...+.++.....+|||||
T Consensus 54 ~~~~~~~Y-~~g-~~~g~~~~D~v~ig~------~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 54 GCTFSITY-GTG-SLSGGLSTDTVSIGD------IEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred CcEEEEEe-CCC-eEEEEEEEEEEEECC------EEECCEEEEEEEecCCccccccccccccCC
Confidence 79999999 565 577999999999984 468899999999998875555567999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.64 E-value=0.00023 Score=58.06 Aligned_cols=91 Identities=13% Similarity=0.099 Sum_probs=60.9
Q ss_pred eEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccCCCCCCCCC
Q 010129 104 LHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSA 182 (517)
Q Consensus 104 ~Y~~~v~vGTP~Q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~~C~~~ 182 (517)
.|++++.|+ .+++.+++|||++.+|+... ...+... +.
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~~l~~~-------------~~-------------------------- 40 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEELAERLGLP-------------LT-------------------------- 40 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcCCC-------------cc--------------------------
Confidence 488999999 89999999999999999875 1111100 00
Q ss_pred CCCCceeEEeCCCCCeEEEEEEEEEEEeccCCCccceecceeeeeeeeeccCCCCCCCCCceeEeeC
Q 010129 183 GSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLG 249 (517)
Q Consensus 183 ~~~~~~~~~Yg~dg~~~~G~~~~Dtl~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGilGLg 249 (517)
......+.. .+|.........+.+++++ ....++.+........ ..+||||+.
T Consensus 41 -~~~~~~~~~-~~G~~~~~~~~~~~i~ig~------~~~~~~~~~v~d~~~~------~~~gIlG~d 93 (96)
T cd05483 41 -LGGKVTVQT-ANGRVRAARVRLDSLQIGG------ITLRNVPAVVLPGDAL------GVDGLLGMD 93 (96)
T ss_pred -CCCcEEEEe-cCCCccceEEEcceEEECC------cEEeccEEEEeCCccc------CCceEeChH
Confidence 123445555 5556566666688999984 4566677766554321 358999985
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=95.07 E-value=0.26 Score=42.27 Aligned_cols=32 Identities=19% Similarity=0.079 Sum_probs=27.6
Q ss_pred CCceEEEEEEecCCCeEEEEEEeCCCCceeEecC
Q 010129 101 LGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD 134 (517)
Q Consensus 101 ~~~~Y~~~v~vGTP~Q~~~v~vDTGS~~~Wv~~~ 134 (517)
.+..|++++.|. ++++.+++|||++.+-+...
T Consensus 8 ~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~ 39 (121)
T TIGR02281 8 GDGHFYATGRVN--GRNVRFLVDTGATSVALNEE 39 (121)
T ss_pred CCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHH
Confidence 345789999998 88999999999999988764
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=94.82 E-value=0.26 Score=39.13 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=21.7
Q ss_pred EEEEecCCCeEEEEEEeCCCCceeEecC
Q 010129 107 TNVSVGQPALSFIVALDTGSDLFWLPCD 134 (517)
Q Consensus 107 ~~v~vGTP~Q~~~v~vDTGS~~~Wv~~~ 134 (517)
+++.|+ .+++.+++|||++.+.+...
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~ 26 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRS 26 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHH
Confidence 357777 78999999999998888764
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=93.97 E-value=0.62 Score=40.08 Aligned_cols=29 Identities=17% Similarity=0.381 Sum_probs=26.4
Q ss_pred eEEEEEEecCCCeEEEEEEeCCCCceeEecC
Q 010129 104 LHYTNVSVGQPALSFIVALDTGSDLFWLPCD 134 (517)
Q Consensus 104 ~Y~~~v~vGTP~Q~~~v~vDTGS~~~Wv~~~ 134 (517)
.+++++.|+ ++++.+++|||++..++...
T Consensus 16 ~~~v~~~In--g~~~~~LvDTGAs~s~Is~~ 44 (124)
T cd05479 16 MLYINVEIN--GVPVKAFVDSGAQMTIMSKA 44 (124)
T ss_pred EEEEEEEEC--CEEEEEEEeCCCceEEeCHH
Confidence 578999999 89999999999999999875
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=93.45 E-value=0.27 Score=42.39 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.6
Q ss_pred ceeechhhhceeEEEEeCCCCEEEE
Q 010129 422 VNIIGQNFMTGYNIVFDREKNVLGW 446 (517)
Q Consensus 422 ~~IlG~~fl~~~yvvfD~~~~~iGf 446 (517)
..|||..||+.+-.+.|+.+++|-+
T Consensus 100 d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 100 DFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred CEEecHHHHHhCCeEEECCCCEEEC
Confidence 6799999999999999999998753
No 32
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=92.04 E-value=0.67 Score=40.59 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=25.3
Q ss_pred ceeechhhhceeEEEEeCCCCEEEEEe
Q 010129 422 VNIIGQNFMTGYNIVFDREKNVLGWKA 448 (517)
Q Consensus 422 ~~IlG~~fl~~~yvvfD~~~~~iGfa~ 448 (517)
..|||..||+.+..+-|..+++|-|..
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~ 131 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNS 131 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeC
Confidence 689999999999999999999999975
No 33
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=91.36 E-value=0.23 Score=40.06 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=25.7
Q ss_pred EEEEEEecCCCeEEEEEEeCCCCceeEecC
Q 010129 105 HYTNVSVGQPALSFIVALDTGSDLFWLPCD 134 (517)
Q Consensus 105 Y~~~v~vGTP~Q~~~v~vDTGS~~~Wv~~~ 134 (517)
||+++.|+ ++++.+++||||+..++...
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~ 28 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEK 28 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHH
Confidence 57899999 99999999999999999875
No 34
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=87.89 E-value=6.7 Score=33.54 Aligned_cols=36 Identities=19% Similarity=0.318 Sum_probs=26.5
Q ss_pred CCeEEEEEeEEEeCCeeeeccCcEEEeccccceeecHHHHHHH
Q 010129 302 HPTYNITITQVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQI 344 (517)
Q Consensus 302 ~~~y~v~l~~i~vg~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 344 (517)
.++|.+. +.|||+ +..++||||.+.+.++.+..+++
T Consensus 9 ~g~~~v~---~~InG~----~~~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYAT---GRVNGR----NVRFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEEE---EEECCE----EEEEEEECCCCcEEcCHHHHHHc
Confidence 4556543 567887 45799999999999998875443
No 35
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=87.56 E-value=3 Score=34.88 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=20.9
Q ss_pred CceeechhhhceeEEEEeCCCCEE
Q 010129 421 NVNIIGQNFMTGYNIVFDREKNVL 444 (517)
Q Consensus 421 ~~~IlG~~fl~~~yvvfD~~~~~i 444 (517)
+..+||..||+.+-++.|+.++++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 478999999999999999987753
No 36
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=85.75 E-value=1.5 Score=33.65 Aligned_cols=31 Identities=26% Similarity=0.361 Sum_probs=27.9
Q ss_pred CceEEEEEEecCCCeEEEEEEeCCCCceeEecC
Q 010129 102 GFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD 134 (517)
Q Consensus 102 ~~~Y~~~v~vGTP~Q~~~v~vDTGS~~~Wv~~~ 134 (517)
...+++.+.|| ++.+.+++|||++...++..
T Consensus 6 ~g~~~v~~~I~--g~~~~alvDtGat~~fis~~ 36 (72)
T PF13975_consen 6 PGLMYVPVSIG--GVQVKALVDTGATHNFISES 36 (72)
T ss_pred CCEEEEEEEEC--CEEEEEEEeCCCcceecCHH
Confidence 35788999999 79999999999999999876
No 37
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=83.49 E-value=15 Score=37.40 Aligned_cols=55 Identities=18% Similarity=0.370 Sum_probs=30.5
Q ss_pred CeeEEeCCCCCC--CCce-ecceeCCCCCeEEEEEeEEEeCCeeeeccCcEEEeccccceeecHHH
Q 010129 278 TGRISFGDKGSP--GQGE-TPFSLRQTHPTYNITITQVSVGGNAVNFEFSAIFDSGTSFTYLNDPA 340 (517)
Q Consensus 278 ~G~L~fGg~d~~--~~~~-tp~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~iiDSGTt~~~lp~~~ 340 (517)
.|.|+||=--++ .+.. ...+.....++..- ..+|+... ...||||+.-.++++..
T Consensus 216 tG~LiFGIgTQsNN~l~~~~~~~~~~~~G~~tt-----~~~G~t~~---~sf~DSGSNg~fF~d~~ 273 (370)
T PF11925_consen 216 TGTLIFGIGTQSNNALPSGATVLTTDSNGDFTT-----TFNGQTYS---ASFFDSGSNGYFFPDSS 273 (370)
T ss_pred eEEEEEecCCcccCcccccceEEeecCCceEEE-----EecCceee---eeeEecCCceeeccCCC
Confidence 699999943222 2323 33344444444332 23333221 24999999999998653
No 38
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=82.16 E-value=2.1 Score=34.97 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=23.9
Q ss_pred EEEEEecCCCeEEEEEEeCCCCceeEecC
Q 010129 106 YTNVSVGQPALSFIVALDTGSDLFWLPCD 134 (517)
Q Consensus 106 ~~~v~vGTP~Q~~~v~vDTGS~~~Wv~~~ 134 (517)
+++|.|. .+++.+++||||+.+-++..
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEK 33 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceeccc
Confidence 4788888 88999999999999999875
No 39
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=73.38 E-value=4.7 Score=32.34 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=21.6
Q ss_pred EEEecCCCeEEEEEEeCCCCceeEecC
Q 010129 108 NVSVGQPALSFIVALDTGSDLFWLPCD 134 (517)
Q Consensus 108 ~v~vGTP~Q~~~v~vDTGS~~~Wv~~~ 134 (517)
.+.|+ .|.+.+++|||.+++-+...
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 46677 89999999999999999764
No 40
>PF13650 Asp_protease_2: Aspartyl protease
Probab=69.03 E-value=5.2 Score=31.43 Aligned_cols=29 Identities=21% Similarity=0.431 Sum_probs=23.1
Q ss_pred EEeCCeeeeccCcEEEeccccceeecHHHHHHH
Q 010129 312 VSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQI 344 (517)
Q Consensus 312 i~vg~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 344 (517)
++|+|+ +..++||||.+.+.+..+.++++
T Consensus 3 v~vng~----~~~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGK----PVRFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCE----EEEEEEcCCCCcEEECHHHHHHc
Confidence 567776 44789999999999998876555
No 41
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=68.15 E-value=38 Score=27.27 Aligned_cols=18 Identities=17% Similarity=0.403 Sum_probs=15.3
Q ss_pred CcEEEeccccceeecHHH
Q 010129 323 FSAIFDSGTSFTYLNDPA 340 (517)
Q Consensus 323 ~~~iiDSGTt~~~lp~~~ 340 (517)
...++|||.....+|...
T Consensus 10 ~~fLVDTGA~vSviP~~~ 27 (89)
T cd06094 10 LRFLVDTGAAVSVLPASS 27 (89)
T ss_pred cEEEEeCCCceEeecccc
Confidence 457999999999999764
No 42
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=65.16 E-value=8.2 Score=30.65 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=21.3
Q ss_pred EEEecCCCeEEEEEEeCCCCceeEecC
Q 010129 108 NVSVGQPALSFIVALDTGSDLFWLPCD 134 (517)
Q Consensus 108 ~v~vGTP~Q~~~v~vDTGS~~~Wv~~~ 134 (517)
.+.|. ++++.+++|||++.+-+...
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~ 26 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSD 26 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHH
Confidence 45566 89999999999999999875
No 43
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=64.11 E-value=13 Score=28.43 Aligned_cols=29 Identities=28% Similarity=0.650 Sum_probs=22.7
Q ss_pred EEeCCeeeeccCcEEEeccccceeecHHHHHHH
Q 010129 312 VSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQI 344 (517)
Q Consensus 312 i~vg~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 344 (517)
+.|+|..+ .+++|||.+..+++....+.+
T Consensus 13 ~~I~g~~~----~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQV----KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEE----EEEEeCCCcceecCHHHHHHh
Confidence 56677544 489999999999998876555
No 44
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=61.69 E-value=12 Score=33.62 Aligned_cols=22 Identities=18% Similarity=0.546 Sum_probs=17.1
Q ss_pred CcEEEeccccceeecHHHHHHH
Q 010129 323 FSAIFDSGTSFTYLNDPAYTQI 344 (517)
Q Consensus 323 ~~~iiDSGTt~~~lp~~~~~~l 344 (517)
..++||||++..++-.++.+.|
T Consensus 46 i~vLfDSGSPTSfIr~di~~kL 67 (177)
T PF12384_consen 46 IKVLFDSGSPTSFIRSDIVEKL 67 (177)
T ss_pred EEEEEeCCCccceeehhhHHhh
Confidence 4689999999998887764444
No 45
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=60.73 E-value=12 Score=34.89 Aligned_cols=52 Identities=19% Similarity=0.254 Sum_probs=33.9
Q ss_pred CCCeEEEEEcCCccEEEcCCeeEEEeCCCCeeEEEEEEEeCCCceeechhhhceeEEEEeCCCCEEEEEe
Q 010129 379 EYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFMTGYNIVFDREKNVLGWKA 448 (517)
Q Consensus 379 ~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~~~~Cl~~~~~~~~~IlG~~fl~~~yvvfD~~~~~iGfa~ 448 (517)
..+.+.+.+ ++..|.+| ..|.. + +.-..|||.+|+|.|+=-...+ .+|-|..
T Consensus 66 ~~~~~~i~I-~~~~F~IP-~iYq~--~-------------~g~d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 66 KAKNGKIQI-ADKIFRIP-TIYQQ--E-------------SGIDIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred EecCceEEE-ccEEEecc-EEEEe--c-------------CCCCEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 445677777 66677665 22211 1 1226899999999887776765 4688865
No 46
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=59.52 E-value=52 Score=28.30 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=21.4
Q ss_pred EEEeCCeeeeccCcEEEeccccceeecHHHHHH
Q 010129 311 QVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQ 343 (517)
Q Consensus 311 ~i~vg~~~~~~~~~~iiDSGTt~~~lp~~~~~~ 343 (517)
.+++||+.+ .|+||||...+.++.+..++
T Consensus 28 ~~~ing~~v----kA~VDtGAQ~tims~~~a~r 56 (124)
T PF09668_consen 28 NCKINGVPV----KAFVDTGAQSTIMSKSCAER 56 (124)
T ss_dssp EEEETTEEE----EEEEETT-SS-EEEHHHHHH
T ss_pred EEEECCEEE----EEEEeCCCCccccCHHHHHH
Confidence 366788754 79999999999999887555
No 47
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=56.89 E-value=19 Score=28.71 Aligned_cols=30 Identities=17% Similarity=0.482 Sum_probs=23.9
Q ss_pred EEEeCCeeeeccCcEEEeccccceeecHHHHHHH
Q 010129 311 QVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQI 344 (517)
Q Consensus 311 ~i~vg~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 344 (517)
.+.|+|+.+ .+.+|||.+.+.++++.+..+
T Consensus 4 ~~~Ing~~i----~~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPL----KFQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEE----EEEEcCCcceEEeCHHHHHHh
Confidence 367788754 578999999999998876655
No 48
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=55.46 E-value=17 Score=28.70 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=22.9
Q ss_pred EEEeCCeeeeccCcEEEeccccceeecHHHHHHH
Q 010129 311 QVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQI 344 (517)
Q Consensus 311 ~i~vg~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 344 (517)
.+.||++ +..++||||++.++++.+..+.+
T Consensus 6 ~v~i~~~----~~~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQ----PVRFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCE----EEEEEEECCCCcEEcCHHHHHHc
Confidence 4567765 35689999999999998765544
No 49
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=53.66 E-value=1.2e+02 Score=28.42 Aligned_cols=38 Identities=21% Similarity=0.054 Sum_probs=30.8
Q ss_pred eeec-ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC
Q 010129 95 TYRL-NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD 134 (517)
Q Consensus 95 ~~~~-~~~~~~Y~~~v~vGTP~Q~~~v~vDTGS~~~Wv~~~ 134 (517)
++.+ ...++-|.++..|= +|++..++|||-+.+-+..+
T Consensus 95 ~v~Lak~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~ 133 (215)
T COG3577 95 EVSLAKSRDGHFEANGRVN--GKKVDFLVDTGATSVALNEE 133 (215)
T ss_pred EEEEEecCCCcEEEEEEEC--CEEEEEEEecCcceeecCHH
Confidence 4555 45556778999998 99999999999999988764
No 50
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=49.48 E-value=13 Score=31.89 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=26.0
Q ss_pred eEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCC
Q 010129 104 LHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCV 139 (517)
Q Consensus 104 ~Y~~~v~vGTP~Q~~~v~vDTGS~~~Wv~~~-C~~C~ 139 (517)
..|+++.|. .+++.+.+|||.-.+-+... +..|.
T Consensus 24 mLyI~~~in--g~~vkA~VDtGAQ~tims~~~a~r~g 58 (124)
T PF09668_consen 24 MLYINCKIN--GVPVKAFVDTGAQSTIMSKSCAERCG 58 (124)
T ss_dssp --EEEEEET--TEEEEEEEETT-SS-EEEHHHHHHTT
T ss_pred eEEEEEEEC--CEEEEEEEeCCCCccccCHHHHHHcC
Confidence 578999999 99999999999999999876 35554
No 51
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=42.46 E-value=22 Score=28.72 Aligned_cols=31 Identities=13% Similarity=0.226 Sum_probs=23.5
Q ss_pred EEeCCeeeeccCcEEEeccccceeecHHHHHHHH
Q 010129 312 VSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQIS 345 (517)
Q Consensus 312 i~vg~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~ 345 (517)
+.++|+ .+..+.+|||.+...+|...|..+.
T Consensus 3 ~~i~g~---~~v~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 3 MKINGK---QSVKFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred eEeCCc---eeEEEEEecCCEEEeccHHHHhhhc
Confidence 556663 3456889999999999988866653
No 52
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=41.82 E-value=29 Score=27.45 Aligned_cols=29 Identities=17% Similarity=0.309 Sum_probs=23.0
Q ss_pred EEeCCeeeeccCcEEEeccccceeecHHHHHHH
Q 010129 312 VSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQI 344 (517)
Q Consensus 312 i~vg~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 344 (517)
+.|||+. ...++|||.+.+.+++...+.+
T Consensus 3 v~InG~~----~~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVP----IVFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEE----EEEEEECCCCeEEECHHHhhhc
Confidence 5677764 4579999999999998876654
No 53
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=39.19 E-value=20 Score=28.97 Aligned_cols=25 Identities=20% Similarity=0.590 Sum_probs=19.5
Q ss_pred EEeCCeeeeccCcEEEeccccceeecHHH
Q 010129 312 VSVGGNAVNFEFSAIFDSGTSFTYLNDPA 340 (517)
Q Consensus 312 i~vg~~~~~~~~~~iiDSGTt~~~lp~~~ 340 (517)
|.++|+ +..++||||...+.++...
T Consensus 10 v~i~g~----~i~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 10 VKINGK----KIKALLDTGADVSIISEKD 34 (100)
T ss_dssp EEETTE----EEEEEEETTBSSEEESSGG
T ss_pred EeECCE----EEEEEEecCCCcceecccc
Confidence 556666 4468999999999999753
No 54
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=28.72 E-value=74 Score=28.71 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=22.7
Q ss_pred EEEEecCCCeEEEEEEeCCCCceeEecC
Q 010129 107 TNVSVGQPALSFIVALDTGSDLFWLPCD 134 (517)
Q Consensus 107 ~~v~vGTP~Q~~~v~vDTGS~~~Wv~~~ 134 (517)
..+.+++-..++.+++||||..-.+...
T Consensus 35 ~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 35 AIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEeecCcEEEEEEeCCCccceeehh
Confidence 4566666689999999999999888764
No 55
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=26.64 E-value=49 Score=28.30 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=18.9
Q ss_pred ceeechhhhceeEEEEeCCCCEE
Q 010129 422 VNIIGQNFMTGYNIVFDREKNVL 444 (517)
Q Consensus 422 ~~IlG~~fl~~~yvvfD~~~~~i 444 (517)
..+||...|+....++|....++
T Consensus 95 ~~liG~~~lk~l~~~vn~~~g~L 117 (125)
T COG5550 95 EPLIGVNLLKLLGLVVNPKTGKL 117 (125)
T ss_pred ccchhhhhhhhccEEEcCCcceE
Confidence 44899999999999999866654
No 56
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=21.27 E-value=7.7e+02 Score=25.30 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=32.4
Q ss_pred EEE-EEEEeCCC-ceeechhhhceeEEEEeCCCCEEEEEecC
Q 010129 411 LYC-LGVVKSDN-VNIIGQNFMTGYNIVFDREKNVLGWKASD 450 (517)
Q Consensus 411 ~~C-l~~~~~~~-~~IlG~~fl~~~yvvfD~~~~~iGfa~~~ 450 (517)
..| +.++...+ ...||-..||++--.-|++++++-++...
T Consensus 306 l~c~ftV~d~~~~d~llGLd~Lrr~~ccIdL~~~~L~ig~~~ 347 (380)
T KOG0012|consen 306 LPCSFTVLDRRDMDLLLGLDMLRRHQCCIDLKTNVLRIGNTE 347 (380)
T ss_pred eccceEEecCCCcchhhhHHHHHhccceeecccCeEEecCCC
Confidence 347 55665543 67899999999999999999999998755
No 57
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=20.53 E-value=1.3e+02 Score=24.95 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=20.3
Q ss_pred EEEEecCCC----eEEEEEEeCCCCcee-Eec
Q 010129 107 TNVSVGQPA----LSFIVALDTGSDLFW-LPC 133 (517)
Q Consensus 107 ~~v~vGTP~----Q~~~v~vDTGS~~~W-v~~ 133 (517)
++|.|..|. -++.+++|||-+..- ++.
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~ 33 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPP 33 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCH
Confidence 577888873 267899999999764 554
Done!