BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010130
(517 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VYC8|RIN2_ARATH E3 ubiquitin protein ligase RIN2 OS=Arabidopsis thaliana GN=RIN2
PE=1 SV=1
Length = 578
Score = 788 bits (2034), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/509 (72%), Positives = 429/509 (84%), Gaps = 8/509 (1%)
Query: 9 LQTIFFGELYPAETRKFVERLINYVIYKGTFLPLVIPPTVFQAGLWSVWLTVLCSLKMFQ 68
L+T+FFG+LY ET+K VERL NY+IYKGTFLPLVIPPT+FQ LW+VWLTVLC+LKMFQ
Sbjct: 78 LKTLFFGDLYDVETKKLVERLANYIIYKGTFLPLVIPPTIFQGVLWTVWLTVLCTLKMFQ 137
Query: 69 ALARDRLERLNASPSATPWTYFRVFSALLFVLAVDIFWIRMCLLLFKTLDSSMFLLLFFE 128
ALARDRLERLNASPS+TPWTYFRV+S L VL+VD+FWI++ L+ + T+ S+++LLL FE
Sbjct: 138 ALARDRLERLNASPSSTPWTYFRVYSVLFLVLSVDMFWIKLSLMTYNTIGSAVYLLLLFE 197
Query: 129 PLSVAFETMQAILVHGFQLLDIWLHHSAGNSTNCARSKFFDTLAAGSLLEWKGILIRNFG 188
P S+AFET+QA+L+HGFQLLD+W++H A +++C RSKF D++ AGSLLEWKG+L RN G
Sbjct: 198 PCSIAFETLQALLIHGFQLLDMWINHLAVKNSDCQRSKFIDSMTAGSLLEWKGLLNRNLG 257
Query: 189 FFLDMATLLMALGHYIHIWWLRGMAFHLVDAILFLNIRALLSAIIKRIKGFIKLRIALGH 248
FFLDMATL+MALGHY+HIWWL G+AFHLVDA+LFLNIRALLSAI+KRIKG+IKLRIALG
Sbjct: 258 FFLDMATLVMALGHYLHIWWLHGIAFHLVDAVLFLNIRALLSAILKRIKGYIKLRIALGA 317
Query: 249 LHAALPDATSEELRAYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPT 308
LHAALPDATSEELRAYDDECAICREPMAKAK+L CNHLFHL CLRSWLDQGLNE+YSCPT
Sbjct: 318 LHAALPDATSEELRAYDDECAICREPMAKAKRLHCNHLFHLGCLRSWLDQGLNEVYSCPT 377
Query: 309 CRKPLFVGRREIEANSRPGEVSSDEQLARQLSMGLDRQNNTGQTLPTGVFPNQTQPPVEG 368
CRKPLFVGR E E N R EVSSDEQLARQ L+RQNN L TG+FP + VE
Sbjct: 378 CRKPLFVGRTENEVNPRTVEVSSDEQLARQ----LERQNNPVHALATGLFPAEVPDSVEN 433
Query: 369 SPWRNAGLDSSWLHAWPSQGVDGAGPSTAMRSVGLSRVQMMMRHLASVGETYAQTAIEDT 428
RN GLD SWL W SQG D AGPST R+VGL RVQMMMRHLASVGE+YAQTA++D
Sbjct: 434 DTSRNLGLDPSWLQTWSSQGSDVAGPSTTSRTVGLGRVQMMMRHLASVGESYAQTALDDA 493
Query: 429 SWSLWPMNPSQASASGSPVPPAVPGRHPGNTGGAHARSTSRSANENIANILAMAETVREV 488
+WSLWPMNPSQAS S + VPP GR TGG H R+ S + NE++ NILAMAETVREV
Sbjct: 494 AWSLWPMNPSQASTSSTTVPPGNGGR----TGGLHLRTVSNTTNESLTNILAMAETVREV 549
Query: 489 LPHMPEDLIFQDLQRTNSATITVNNLLQM 517
+PH+P+++IFQDLQRTNS +TVNNLLQM
Sbjct: 550 MPHVPDEIIFQDLQRTNSVAVTVNNLLQM 578
>sp|Q8W4Q5|RIN3_ARATH E3 ubiquitin protein ligase RIN3 OS=Arabidopsis thaliana GN=RIN3
PE=1 SV=2
Length = 577
Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/511 (70%), Positives = 423/511 (82%), Gaps = 9/511 (1%)
Query: 7 FPLQTIFFGELYPAETRKFVERLINYVIYKGTFLPLVIPPTVFQAGLWSVWLTVLCSLKM 66
L+T+FFG+LY ETRK VERL NY+IYKGTFLP V+P TVFQ LW++WLTVLC+LKM
Sbjct: 76 LSLKTLFFGDLYAIETRKLVERLANYIIYKGTFLPFVVPRTVFQGVLWTIWLTVLCTLKM 135
Query: 67 FQALARDRLERLNASPSATPWTYFRVFSALLFVLAVDIFWIRMCLLLFKTLDSSMFLLLF 126
FQALARDRL+RLNASPS+TPWTYFRV+SAL VL+ D+ WI++ L+++ T+ SS++LLL
Sbjct: 136 FQALARDRLDRLNASPSSTPWTYFRVYSALFMVLSTDLCWIKLSLMIYNTVGSSVYLLLL 195
Query: 127 FEPLSVAFETMQAILVHGFQLLDIWLHHSAGNSTNCARSKFFDTLAAGSLLEWKGILIRN 186
FEP +AFET+QA+L+HGFQLLD+W++H A +++C RSKF+D++ AGSLLEWKG+L RN
Sbjct: 196 FEPCGIAFETLQALLIHGFQLLDMWINHLAVKNSDCQRSKFYDSMTAGSLLEWKGLLNRN 255
Query: 187 FGFFLDMATLLMALGHYIHIWWLRGMAFHLVDAILFLNIRALLSAIIKRIKGFIKLRIAL 246
GFFLDMATL+MALGHY+HIWWL GMAFHLVDA+LFLNIRALLS+I+KRIKG+IKLR+AL
Sbjct: 256 LGFFLDMATLVMALGHYLHIWWLHGMAFHLVDAVLFLNIRALLSSILKRIKGYIKLRVAL 315
Query: 247 GHLHAALPDATSEELRAYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSC 306
G LHAAL DATSEELR YDDECAICREPMAKAK+L CNHLFHL CLRSWLDQGLNE+YSC
Sbjct: 316 GALHAALLDATSEELRDYDDECAICREPMAKAKRLHCNHLFHLGCLRSWLDQGLNEVYSC 375
Query: 307 PTCRKPLFVGRREIEANSRPGEVSSDEQLARQLSMGLDRQNNTGQTLPTGVFPNQTQPPV 366
PTCRKPLFVGR E EAN GEVSSDE LARQ +RQNN+ L TG+FP +T
Sbjct: 376 PTCRKPLFVGRTESEANPSRGEVSSDEHLARQ----FERQNNSVHALTTGMFPTETPNFT 431
Query: 367 EGSPWRNAGLDSSWLHAWPSQGVDGAGPSTAMRSVGLSRVQMMMRHLASVGETYAQTAIE 426
E PWRN+ +D SWL W QGVD G S RSVGL +VQ+MMRHLASVGE AQT ++
Sbjct: 432 ESDPWRNSEVDPSWLQTWSDQGVDVVGSSAGSRSVGLGQVQLMMRHLASVGEGSAQTTLD 491
Query: 427 DTSWSLWPMNPSQASASGSPVPPAVPGRHPGNTGGAHARSTSRSANENIANILAMAETVR 486
D SW LWPMNPSQAS S + VPP GR TGG H R+ SR+AN N+A+ILAMAETVR
Sbjct: 492 DASWGLWPMNPSQASTSSTYVPPGAGGR----TGGLHLRTVSRAAN-NMASILAMAETVR 546
Query: 487 EVLPHMPEDLIFQDLQRTNSATITVNNLLQM 517
EVLPH+P+++IFQDLQRTNS ++TVNNLLQM
Sbjct: 547 EVLPHVPDEIIFQDLQRTNSVSVTVNNLLQM 577
>sp|Q9R049|AMFR_MOUSE E3 ubiquitin-protein ligase AMFR OS=Mus musculus GN=Amfr PE=1 SV=2
Length = 643
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/332 (29%), Positives = 148/332 (44%), Gaps = 31/332 (9%)
Query: 9 LQTIFFGELYPAETRKFVERLINYVIYKGTFLPLVIP-PTVFQAGLWSVWLTVLCSLKMF 67
+Q I FG L +E + ++ N++ YK F+ V+ TV + +W +W L L +
Sbjct: 102 IQCIVFGPLRVSERQHLKDKFWNFIFYKFIFIFGVLNVQTVEEVVMWCLWFAGLVFLHLM 161
Query: 68 QALARDRLERLNASPSATPWTYFRVFSALLFVLAVDIFWIRMCLLLFKTLDSSMFLLLFF 127
L +DR E L+ SP+ ++ RV S L+ +L +C + T +
Sbjct: 162 VQLCKDRFEYLSFSPTTPMSSHGRVLSLLIAMLLSCCGLAVVCCVTGYTHGMHTLAFMAA 221
Query: 128 EPLSVAFETMQAILVHGFQLLDIWLHHSAGNSTNCARSKFFDTLAAGSLLEWKGILIRNF 187
E L V T IL + L D L+H E KG +
Sbjct: 222 ESLLVTVRTAHVILRYVIHLWD--LNHEGT-------------------WEGKGTYVYYT 260
Query: 188 GFFLDMATLLMALGHYIHIWWLRGMAFHLVDAILFLNIRALLSAIIKRIKGFIKLRIALG 247
F +++A L + L H+IH+ + + ++F+ +R L + +RI+ +G
Sbjct: 261 DFVMELALLSLDLMHHIHMLLFGNIWLSMASLVIFMQLRYLFHEVQRRIRRHKNYLRVVG 320
Query: 248 HLHAALPDATSEELRAYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCP 307
++ A AT EEL +D+CAIC + M A+KL C HLFH +CLRSWL+Q SCP
Sbjct: 321 NMEARFAVATPEELAVNNDDCAICWDSMQAARKLPCGHLFHNSCLRSWLEQD----TSCP 376
Query: 308 TCRKPLFVGRREIEANSRPGEVSSDEQLARQL 339
TCR L I SR E E L L
Sbjct: 377 TCRMSL-----NIADGSRAREDHQGENLDENL 403
Score = 40.4 bits (93), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 480 AMAETVREVLPHMPEDLIFQDLQRTNSATITVNNLLQ 516
AMA ++E+ P +P L+ QDLQ T S IT +N+L+
Sbjct: 459 AMAHQIQEMFPQVPYHLVLQDLQMTRSVEITTDNILE 495
>sp|Q9UKV5|AMFR_HUMAN E3 ubiquitin-protein ligase AMFR OS=Homo sapiens GN=AMFR PE=1 SV=2
Length = 643
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 97/332 (29%), Positives = 148/332 (44%), Gaps = 31/332 (9%)
Query: 9 LQTIFFGELYPAETRKFVERLINYVIYKGTFLPLVIP-PTVFQAGLWSVWLTVLCSLKMF 67
+Q I FG L +E + ++ N++ YK F+ V+ TV + +W +W L L +
Sbjct: 102 IQCIVFGPLRVSERQHLKDKFWNFIFYKFIFIFGVLNVQTVEEVVMWCLWFAGLVFLHLM 161
Query: 68 QALARDRLERLNASPSATPWTYFRVFSALLFVLAVDIFWIRMCLLLFKTLDSSMFLLLFF 127
L +DR E L+ SP+ ++ RV S L+ +L +C + T +
Sbjct: 162 VQLCKDRFEYLSFSPTTPMSSHGRVLSLLVAMLLSCCGLAAVCSITGYTHGMHTLAFMAA 221
Query: 128 EPLSVAFETMQAILVHGFQLLDIWLHHSAGNSTNCARSKFFDTLAAGSLLEWKGILIRNF 187
E L V T IL + L D L+H E KG +
Sbjct: 222 ESLLVTVRTAHVILRYVIHLWD--LNHEGT-------------------WEGKGTYVYYT 260
Query: 188 GFFLDMATLLMALGHYIHIWWLRGMAFHLVDAILFLNIRALLSAIIKRIKGFIKLRIALG 247
F +++ L + L H+IH+ + + ++F+ +R L + +RI+ +G
Sbjct: 261 DFVMELTLLSLDLMHHIHMLLFGNIWLSMASLVIFMQLRYLFHEVQRRIRRHKNYLRVVG 320
Query: 248 HLHAALPDATSEELRAYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCP 307
++ A AT EEL +D+CAIC + M A+KL C HLFH +CLRSWL+Q SCP
Sbjct: 321 NMEARFAVATPEELAVNNDDCAICWDSMQAARKLPCGHLFHNSCLRSWLEQDT----SCP 376
Query: 308 TCRKPLFVGRREIEANSRPGEVSSDEQLARQL 339
TCR L I N+R E E L L
Sbjct: 377 TCRMSL-----NIADNNRVREEHQGENLDENL 403
Score = 40.4 bits (93), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 480 AMAETVREVLPHMPEDLIFQDLQRTNSATITVNNLLQ 516
AMA ++E+ P +P L+ QDLQ T S IT +N+L+
Sbjct: 459 AMAHQIQEMFPQVPYHLVLQDLQLTRSVEITTDNILE 495
>sp|Q803I8|SYVN1_DANRE E3 ubiquitin-protein ligase synoviolin OS=Danio rerio GN=syvn1 PE=2
SV=2
Length = 625
Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 82/311 (26%), Positives = 141/311 (45%), Gaps = 50/311 (16%)
Query: 9 LQTIFFGELYPAETRKFVER--------LINYVIYKGTFLPLVIPPTVFQAGLWSVWLTV 60
++ +FFG+L AE +ER + + +++ F P + T+
Sbjct: 61 MRKVFFGQLRAAEMEHLIERSWYAVTETCLAFTVFRDDFSPRFV-----------ALFTL 109
Query: 61 LCSLKMFQALARDRLERLNASPSATPWTYFRVFSALLFVLAVDIFWIRMCLLLFKTLDSS 120
L LK F LA DR++ + SP+ + +FRV S ++ + +D ++ T +S
Sbjct: 110 LLFLKCFHWLAEDRVDFMERSPNISWVFHFRVLSLMVLLGVMDFLFVNHACHSIITRGAS 169
Query: 121 MFLLLFFEPLSVAFETMQAILVHGFQLLDIWLHHSAGNSTNCARSKFFDTLAAGSLLEWK 180
+ L+ FE + + + + +D+ S N A + L G + K
Sbjct: 170 VQLVFGFEYAILMTMVLTTFIKYTLHTIDL---QSENPWDNKAVYMLYTELFTGFI---K 223
Query: 181 GILIRNFGFFLDMATLLMALGHYIHIWWLRGMAFHLVDAILFLNIRALLSAIIKRIKGFI 240
+L ++ T+++ + H ++ +R M +L +R A+ I
Sbjct: 224 VLL------YMAFMTIMIKV-HTFPLFAIRPM---------YLAMRQFKKAVTDAIMS-- 265
Query: 241 KLRIALGHLHAALPDATSEELRAYDDECAICREPMAK-AKKLLCNHLFHLACLRSWLDQG 299
R A+ +++ PDAT E+L+A D+ C ICRE M AKKL CNH+FH +CLRSW +
Sbjct: 266 --RRAIRNMNTLYPDATPEDLQATDNVCIICREEMVTGAKKLPCNHIFHSSCLRSWFQR- 322
Query: 300 LNEMYSCPTCR 310
+CPTCR
Sbjct: 323 ---QQTCPTCR 330
>sp|Q5XHH7|SYVNB_XENLA E3 ubiquitin-protein ligase synoviolin B OS=Xenopus laevis
GN=syvn1-b PE=2 SV=1
Length = 595
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 142/308 (46%), Gaps = 50/308 (16%)
Query: 12 IFFGELYPAETRKFVER--------LINYVIYKGTFLPLVIPPTVFQAGLWSVWLTVLCS 63
+FFG+L AE +ER + + +++ F P + T+L
Sbjct: 58 VFFGQLRAAEMEHLLERSWYAVTETCLAFTVFRDDFSPRFV-----------ALFTLLLF 106
Query: 64 LKMFQALARDRLERLNASPSATPWTYFRVFSALLFVLAVDIFWIRMCLLLFKTLDSSMFL 123
LK F LA DR++ + SP+ + +FR+ + +L + +D F++ T +S+ L
Sbjct: 107 LKCFHWLAEDRVDFMERSPNISWLFHFRILALMLLLGVLDAFFVSHAYNSLVTRGASVQL 166
Query: 124 LLFFEPLSVAFETMQAILVHGFQLLDIWLHHSAGNSTNCARSKFFDTLAAGSLLEWKGIL 183
+ FE + + +++ F + LH S N +K L + +L
Sbjct: 167 VFGFE-----YAILMTMILAVF--IKYILHSVDLQSENPWDNKAVYMLYTELFTGFIKVL 219
Query: 184 IRNFGFFLDMATLLMALGHYIHIWWLRGMAFHLVDAILFLNIRALLSAIIKRIKGFIKLR 243
+ ++ T+++ + H ++ +R M +L +R A+ + R
Sbjct: 220 L-----YMAFMTIMVKV-HTFPLFAIRPM---------YLAMRQFKKAVTDAVMS----R 260
Query: 244 IALGHLHAALPDATSEELRAYDDECAICREPMAK-AKKLLCNHLFHLACLRSWLDQGLNE 302
A+ +++ PDAT+EEL+A D+ C ICRE M AK+L CNH+FH +CLRSW +
Sbjct: 261 RAIRNMNTLYPDATAEELQAMDNVCIICREEMVSGAKRLPCNHIFHTSCLRSWFQR---- 316
Query: 303 MYSCPTCR 310
+CPTCR
Sbjct: 317 QQTCPTCR 324
>sp|Q6NRL6|SYVNA_XENLA E3 ubiquitin-protein ligase synoviolin A OS=Xenopus laevis
GN=syvn1-a PE=2 SV=1
Length = 605
Score = 96.3 bits (238), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 141/308 (45%), Gaps = 50/308 (16%)
Query: 12 IFFGELYPAETRKFVER--------LINYVIYKGTFLPLVIPPTVFQAGLWSVWLTVLCS 63
+FFG+L AE +ER + + +++ F P + T+L
Sbjct: 58 VFFGQLRAAEMEHLLERSWYAVTETCLAFTVFRDDFSPRFV-----------ALFTLLLF 106
Query: 64 LKMFQALARDRLERLNASPSATPWTYFRVFSALLFVLAVDIFWIRMCLLLFKTLDSSMFL 123
LK F LA DR++ + SP+ + +FR+ + +L + +D F++ +S+ L
Sbjct: 107 LKCFHWLAEDRVDFMERSPNISWLFHFRILALMLLLGVLDAFFVSHAYHSLVIRGASVQL 166
Query: 124 LLFFEPLSVAFETMQAILVHGFQLLDIWLHHSAGNSTNCARSKFFDTLAAGSLLEWKGIL 183
+ FE + + +++ F + LH S N +K L + +L
Sbjct: 167 VFGFE-----YAILMTVILTVF--IKYILHSVDLQSENPWDNKAVYMLYTELFTGFIKVL 219
Query: 184 IRNFGFFLDMATLLMALGHYIHIWWLRGMAFHLVDAILFLNIRALLSAIIKRIKGFIKLR 243
+ ++ T+++ + H ++ +R M +L +R A+ I R
Sbjct: 220 L-----YVAFMTIMVKV-HTFPLFAIRPM---------YLAMRQFKKAVTDAIMS----R 260
Query: 244 IALGHLHAALPDATSEELRAYDDECAICREPMAK-AKKLLCNHLFHLACLRSWLDQGLNE 302
A+ +++ PDAT+EEL+A D+ C ICRE M AK+L CNH+FH +CLRSW +
Sbjct: 261 RAIRNMNTLYPDATAEELQAMDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQR---- 316
Query: 303 MYSCPTCR 310
+CPTCR
Sbjct: 317 QQTCPTCR 324
>sp|Q9DBY1|SYVN1_MOUSE E3 ubiquitin-protein ligase synoviolin OS=Mus musculus GN=Syvn1
PE=1 SV=3
Length = 612
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 150/332 (45%), Gaps = 54/332 (16%)
Query: 12 IFFGELYPAETRKFVER--------LINYVIYKGTFLPLVIPPTVFQAGLWSVWLTVLCS 63
+FFG+L AE +ER + + +++ F P + T+L
Sbjct: 64 VFFGQLRAAEMEHLLERSWYAVTETCLAFTVFRDDFSPRFV-----------ALFTLLLF 112
Query: 64 LKMFQALARDRLERLNASPSATPWTYFRVFSALLFVLAV-DIFWIRMCLLLFKTLDSSMF 122
LK F LA DR++ + SP+ + W + +L+F+L + D ++ T +S+
Sbjct: 113 LKCFHWLAEDRVDFMERSPNIS-WLFHCRIVSLMFLLGILDFLFVSHAYHSILTRGASVQ 171
Query: 123 LLLFFEPLSVAFETMQAILVHGFQLLDIWLHHSAGNSTNCARSKFFDTLAAGSLLEWKGI 182
L+ FE + + +++ F + LH S N +K L + +
Sbjct: 172 LVFGFE-----YAILMTMVLTIF--IKYVLHSVDLQSENPWDNKAVYMLYTELFTGFIKV 224
Query: 183 LIRNFGFFLDMATLLMALGHYIHIWWLRGMAFHLVDAILFLNIRALLSAIIKRIKGFIKL 242
L+ ++ T+++ + H ++ +R M +L +R A+ I
Sbjct: 225 LL-----YMAFMTIMIKV-HTFPLFAIRPM---------YLAMRQFKKAVTDAIMS---- 265
Query: 243 RIALGHLHAALPDATSEELRAYDDECAICREPMAK-AKKLLCNHLFHLACLRSWLDQGLN 301
R A+ +++ PDAT EEL+A D+ C ICRE M AK+L CNH+FH +CLRSW +
Sbjct: 266 RRAIRNMNTLYPDATPEELQAVDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQR--- 322
Query: 302 EMYSCPTCRKPLFVGRREIEANSRPGEVSSDE 333
+CPTCR + V R + A S P +D+
Sbjct: 323 -QQTCPTCR--MDVLRASLPAQSPPPPEPADQ 351
>sp|Q86TM6|SYVN1_HUMAN E3 ubiquitin-protein ligase synoviolin OS=Homo sapiens GN=SYVN1
PE=1 SV=2
Length = 617
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 150/332 (45%), Gaps = 54/332 (16%)
Query: 12 IFFGELYPAETRKFVER--------LINYVIYKGTFLPLVIPPTVFQAGLWSVWLTVLCS 63
+FFG+L AE +ER + + +++ F P + T+L
Sbjct: 64 VFFGQLRAAEMEHLLERSWYAVTETCLAFTVFRDDFSPRFV-----------ALFTLLLF 112
Query: 64 LKMFQALARDRLERLNASPSATPWTYFRVFSALLFVLAV-DIFWIRMCLLLFKTLDSSMF 122
LK F LA DR++ + SP+ + W + +L+F+L + D ++ T +S+
Sbjct: 113 LKCFHWLAEDRVDFMERSPNIS-WLFHCRIVSLMFLLGILDFLFVSHAYHSILTRGASVQ 171
Query: 123 LLLFFEPLSVAFETMQAILVHGFQLLDIWLHHSAGNSTNCARSKFFDTLAAGSLLEWKGI 182
L+ FE + + +++ F + LH S N +K L + +
Sbjct: 172 LVFGFE-----YAILMTMVLTIF--IKYVLHSVDLQSENPWDNKAVYMLYTELFTGFIKV 224
Query: 183 LIRNFGFFLDMATLLMALGHYIHIWWLRGMAFHLVDAILFLNIRALLSAIIKRIKGFIKL 242
L+ ++ T+++ + H ++ +R M +L +R A+ I
Sbjct: 225 LL-----YMAFMTIMIKV-HTFPLFAIRPM---------YLAMRQFKKAVTDAIMS---- 265
Query: 243 RIALGHLHAALPDATSEELRAYDDECAICREPMAK-AKKLLCNHLFHLACLRSWLDQGLN 301
R A+ +++ PDAT EEL+A D+ C ICRE M AK+L CNH+FH +CLRSW +
Sbjct: 266 RRAIRNMNTLYPDATPEELQAMDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQR--- 322
Query: 302 EMYSCPTCRKPLFVGRREIEANSRPGEVSSDE 333
+CPTCR + V R + A S P +D+
Sbjct: 323 -QQTCPTCR--MDVLRASLPAQSPPPPEPADQ 351
>sp|Q20798|HRD1_CAEEL E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis elegans
GN=sel-11 PE=3 SV=1
Length = 610
Score = 82.4 bits (202), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 139/315 (44%), Gaps = 42/315 (13%)
Query: 9 LQTIFFGELYPAETRKFVERLINYVIYKGTFLPLVIPPTVFQAGLWSVWLTVLCSL---K 65
L++I FG+L AE ER + V L + TVF+ ++++ L K
Sbjct: 62 LKSILFGDLRAAEAEHLSERTWHAV------LETCLAFTVFRDDFSAIFVMQFIGLLFIK 115
Query: 66 MFQALARDRLERLNASPSATPWTYFRVFSALLFVLAVDIFWIRMCLLLFKTLDSSMFLLL 125
F LA DR++ + SP T + R+ + L + D +++ T +S ++
Sbjct: 116 CFHWLADDRVDMMERSPVITLRFHLRMMTVLAALGFADSYFVSSAYFTTITRGASAQIVF 175
Query: 126 FFEPLSVAFETMQAILVHGFQLLDIWLHHSAGNSTNCARSKFFDTLAAGSLLEWKGILIR 185
FE + + A+++H + LH + +K L A + L+
Sbjct: 176 GFE-----YAILLALVLHV--TIKYLLHMHDLRNPQSWDNKAVYLLYAELFINLIRCLL- 227
Query: 186 NFGFFLDMATLLMALGHYIHIWWLRGMAFHLVDAILFLNIRALLSAIIKRIKGFIKLRIA 245
+GFF ++M H ++ +R + ++RAL A + I R A
Sbjct: 228 -YGFF----AVVMLRVHTFPLFSVRP---------FYQSVRALHKAFLDVILS----RRA 269
Query: 246 LGHLHAALPDATSEELRAYDDECAICREPM---AKAKKLLCNHLFHLACLRSWLDQGLNE 302
+ +++ P ++E+L A D C ICRE M A K+L C+H+FH CLRSW +
Sbjct: 270 INAMNSQFPVVSAEDLAAMDATCIICREEMTVDASPKRLPCSHVFHAHCLRSWFQR---- 325
Query: 303 MYSCPTCRKPLFVGR 317
+CPTCR ++ GR
Sbjct: 326 QQTCPTCRTDIWQGR 340
>sp|A8Y4B2|HRD1_CAEBR E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis briggsae
GN=sel-11 PE=3 SV=2
Length = 622
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 141/315 (44%), Gaps = 42/315 (13%)
Query: 9 LQTIFFGELYPAETRKFVERLINYVIYKGTFLPLVIPPTVFQ---AGLWSVWLTVLCSLK 65
L++I FG+L AE ER + V L + TVF+ + ++ + L +K
Sbjct: 62 LKSILFGDLRAAEAEHLSERTWHAV------LETCLAFTVFRDDFSAMFVMQFIGLLFIK 115
Query: 66 MFQALARDRLERLNASPSATPWTYFRVFSALLFVLAVDIFWIRMCLLLFKTLDSSMFLLL 125
F LA DR++ + SP T + R+ + L + D +++ T +S ++
Sbjct: 116 CFHWLADDRVDMMERSPVITLRFHLRMMTVLAALGFADSYFVSSAYFSTITKGASSQIVF 175
Query: 126 FFEPLSVAFETMQAILVHGFQLLDIWLHHSAGNSTNCARSKFFDTLAAGSLLEWKGILIR 185
FE + + A+++H + LH + +K L A L+ ++
Sbjct: 176 GFE-----YAILLALVLH--VTIKYLLHMHDLRNPQSWDNKAVYLLYAELLINLIRCVL- 227
Query: 186 NFGFFLDMATLLMALGHYIHIWWLRGMAFHLVDAILFLNIRALLSAIIKRIKGFIKLRIA 245
+GFF ++M H ++ +R + ++RAL A + I R A
Sbjct: 228 -YGFF----AVIMLRVHTFPLFSVRP---------FYQSVRALHKAFLDVILS----RRA 269
Query: 246 LGHLHAALPDATSEELRAYDDECAICREPM---AKAKKLLCNHLFHLACLRSWLDQGLNE 302
+ +++ P +++EL A D C ICRE M + K+L C+H+FH CLRSW +
Sbjct: 270 INAMNSQFPVVSNDELSAMDATCIICREEMTVESSPKRLPCSHVFHAHCLRSWFQR---- 325
Query: 303 MYSCPTCRKPLFVGR 317
+CPTCR ++ GR
Sbjct: 326 QQTCPTCRTDIWQGR 340
>sp|Q95SP2|HRD1_DROME E3 ubiquitin-protein ligase HRD1 OS=Drosophila melanogaster GN=sip3
PE=1 SV=1
Length = 626
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 129/314 (41%), Gaps = 56/314 (17%)
Query: 9 LQTIFFGELYPAETRKFVERL--------INYVIYKGTFLPLVIPPTVFQAGLWSVWLTV 60
L IF G L AE +ER + + +++ F P + TV
Sbjct: 59 LSKIFLGTLRAAEFEHLLERFWYALTETCLAFTVFRDDFNPRFV-----------ALFTV 107
Query: 61 LCSLKMFQALARDRLERLNASPSATPWTYFRVFSALLFVLAVDIFWIRMCLLLFKTLDSS 120
L LK F LA +R++ + SP W + +LL VL + + +LL +S+
Sbjct: 108 LLFLKSFHWLAEERVDFMERSP-VLGWLFHIRVGSLLTVLGILDY-----VLLIHAYNST 161
Query: 121 MFLLLFFEPLSVAFETMQAILVHGFQLLDIWLHHSAGNSTNCARSKFFDTLAAGSLLEWK 180
+ V T+Q + + +L + +A A DT W+
Sbjct: 162 L----------VRGPTVQLVFGFEYAILLTVIASTAIKYVLHAAEMRTDT-------PWE 204
Query: 181 GILIRNFGFFLDMATLLMALGHYIHIWWLRGMAFHL---VDAILFLNIRALLSAIIKRIK 237
+ F + ++ L+ + YI + + L V +F IR A+
Sbjct: 205 NKAV--FLLYTELVIGLIKVVLYILFVVIMAKIYALPMFVFRPMFFTIRNFRKAL----N 258
Query: 238 GFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAK-AKKLLCNHLFHLACLRSWL 296
I R A+ +++ PDAT EELR D+ C ICRE M +KKL C H+FH CLRSW
Sbjct: 259 DVIMSRRAIRNMNTLYPDATPEELRQSDNICIICREDMVNHSKKLPCGHIFHTTCLRSWF 318
Query: 297 DQGLNEMYSCPTCR 310
+ +CPTCR
Sbjct: 319 QR----QQTCPTCR 328
>sp|O74757|HRD1_SCHPO ERAD-associated E3 ubiquitin-protein ligase hrd1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hrd1 PE=1 SV=1
Length = 677
Score = 65.5 bits (158), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 105/466 (22%), Positives = 176/466 (37%), Gaps = 81/466 (17%)
Query: 9 LQTIFFGELYPAETRKFVERLINYVIYKGTFLPLVIPPTVFQAGLWSVWLTVLCSL---K 65
L+T+ FG L E E+ + T +++ TVF+ + + +L +L +
Sbjct: 60 LKTLLFGSLQTFELELLYEQ------FWITLTEIMLAITVFREAISISFFMLLSTLMFAR 113
Query: 66 MFQALARDRLERLNASPSATPWTYFRVFSALLFVLAV-DIFWIRMCLLLFKTLDSSMFLL 124
+F ++ R ERL + + F + FVL++ D I +C D S +L
Sbjct: 114 VFHSICSFRTERLQIQLTDQRFHIFSRLTCAYFVLSILDASLIYLCFTSEHLGDKSTRML 173
Query: 125 LFFEPLSVAFETMQAILVHGFQLLDIWLHHSAGNSTNCARSKFFDTL-AAGSLLEWKGIL 183
E F + L L I+L+ + + D + S ++ +
Sbjct: 174 FVCE-----FSVLLLNLTIEASKLCIYLYEA----------RHLDQVWDEKSTYLFRLEV 218
Query: 184 IRNFGFFLDMATLLMALGHYIH--IWWLRGMAFHLVDAILFLNIRALLSAIIKRIKGFIK 241
R+ L + L M Y+ I+ +R M ++ +RI+ +
Sbjct: 219 CRDGLRLLAYSLLFMYQFPYVSVPIYSIRQMY-------------TCFYSLFRRIREHAR 265
Query: 242 LRIALGHLHAALPDATSEELRAYDDECAICREPM---------------------AKAKK 280
R A ++A P AT E+L D C ICRE M K+
Sbjct: 266 FRQATRDMNAMYPTATEEQLTNSDRTCTICREEMFHPDHPPENTDEMEPLPRGLDMTPKR 325
Query: 281 LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRREIEANSRPGEVSSDEQLARQLS 340
L C H+ H CLR+WL++ +CP CR+ + +G + +S G +S A Q++
Sbjct: 326 LPCGHILHFHCLRNWLER----QQTCPICRRSV-IGNQ----SSPTGIPASPNVRATQIA 376
Query: 341 MGLDRQNNTGQTLPTGVFPNQTQPPVEGSPWRNAGLDSSWLHAWPSQGVDGAGPSTAMRS 400
+ NT T T V P T +G P +S + P+ G T S
Sbjct: 377 TQVPNPQNTPTT--TAV-PGITNSSNQGDP------QASTFNGVPNANSSGFAAHTQDLS 427
Query: 401 VGLSRVQMMMRHLASVGETYAQTAIEDTSWSLWPMNPSQASASGSP 446
+ R ++ +R ++ I S S NPS +G P
Sbjct: 428 SVIPR-RIALRDGWTMLPIPGTRRIPTYSQSTSTTNPSATPTTGDP 472
>sp|Q7KRW1|TRC8_DROME Protein TRC8 homolog OS=Drosophila melanogaster GN=Trc8 PE=1 SV=1
Length = 809
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 239 FIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQ 298
F+K R A+ H +ALP+AT +L+A+DD CAIC + M AK C H FH CLR W
Sbjct: 593 FMKRRSAV-HKISALPEATPAQLQAFDDVCAICYQEMYSAKITRCRHFFHGVCLRKW--- 648
Query: 299 GLNEMYSCPTCRKPLFVGRREIE 321
L CP C + + + E
Sbjct: 649 -LYVQDRCPLCHEIMMYTDKADE 670
>sp|Q7TMV1|RN139_MOUSE E3 ubiquitin-protein ligase RNF139 OS=Mus musculus GN=Rnf139 PE=1
SV=1
Length = 668
Score = 62.4 bits (150), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 16/122 (13%)
Query: 237 KGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAKAKKLL-CNHLFHLACLRSW 295
K F+ R A+ +++ LP+ L+ DD CAIC + ++ CNH FH CLR W
Sbjct: 517 KTFMNRRTAVKKINS-LPEIKGSHLQEIDDVCAICYHEFTTSARITPCNHYFHALCLRKW 575
Query: 296 LDQGLNEMYSCPTCRKPLFVGRREIEANSR---------PGEVSSDEQLARQLSMGLDRQ 346
L +CP C + +++ EI+ NS P E + E+ R+ + G DR+
Sbjct: 576 ----LYIQDTCPMCHQKVYI-EDEIKDNSNASNNNGFIAPNENPNPEEALREDAAGSDRE 630
Query: 347 NN 348
N
Sbjct: 631 LN 632
>sp|Q75CC8|HRD1_ASHGO ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=HRD1 PE=3 SV=2
Length = 575
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 102/521 (19%), Positives = 200/521 (38%), Gaps = 84/521 (16%)
Query: 12 IFFGELYPAETRKFVERLINYVIYKGTFLPLVIPPTVFQAGLWSVWLTVLCSLKMFQALA 71
+ FG+L E ERL +V+ ++ + AG ++ LC + + +
Sbjct: 69 VLFGQLTAIEYDHIFERL--HVVLVTLASIVITMRKTYMAGHMTILFYTLCLVAHW--VL 124
Query: 72 RDRLE---RLNASPSATPWTYFRVFSALLFVLA-VDIFWIRMCLLLFKTLDS---SMFLL 124
RDR++ +++ + S+ F L VL VD ++ C+ +D ++L+
Sbjct: 125 RDRMDFVFQVHGTDSSLLGILCSRFMFSLLVLGMVDYKMLKFCVQ-NTNVDGKRHDLYLM 183
Query: 125 LFFEPLSVAFETMQAILVHGFQLLDIW---------LHHSAGNSTNCARSKFFDTLAAGS 175
L + + + +L+ L ++ L + G + + A + F
Sbjct: 184 LALSFAQLILDVLHVVLLTSLNLFEMVRSRRTRSANLVYEGGTTDDDADDEVF------- 236
Query: 176 LLEWKGILIRNFGFFLDMATLLMALGHYIHIWWLRGMAFHLVDAILFLNIRALLSAIIKR 235
+LE K I F + + +++ + + + W + +V +I +I+A S ++
Sbjct: 237 ILEGKYIYETVFDLTITVLKVILDIIQEVFVPW----SITVVYSIFVRSIKAGESFLL-- 290
Query: 236 IKGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPM----------AKAKKLLCNH 285
+ + K L+ L D + E+L D C IC + M +AK L C H
Sbjct: 291 VYNYWKNN---KKLYEKLSDVSEEQLDDTDSMCIICMDDMLPTTETTKMNRRAKMLPCGH 347
Query: 286 LFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRREIEANSRPGEVSSDEQLARQLSMGLDR 345
+ H CL+SW+++ +CP CR +F A ++ E + + L + G+D
Sbjct: 348 MLHFGCLKSWMERS----QTCPICRLSVFANDSNSHATTQAREQTPPDLLQER---GIDE 400
Query: 346 QNNT---------------GQTLPTGVFPNQTQPPVEGSPWRNAGLDSSWLHAWPSQGVD 390
+ G + G N +G + D + A+P ++
Sbjct: 401 HIDVIGMQDMSVQSISLHEGTAVRRGTTGNCMNQAYDGGLLSHEERDQAGWVAFP---IE 457
Query: 391 GAGPSTAMRSVGLSRVQMMMRHLASVGETYAQTAIEDTSWSLWPMNPSQASASGSPVP-P 449
+ L+ Q + +AS Q + +P AS S S +P P
Sbjct: 458 FRADNKVF--FNLNDSQGDRQWMASYTSYPRQNMVNSD-------DPDNASESHSRIPSP 508
Query: 450 AVPGRHPGNTGGAHARSTSRSANENIANILAMA--ETVREV 488
++PG G + +++ A N ++A + E +EV
Sbjct: 509 SLPGSLEGTSSQVDVTVSAKDAPANACFVIATSKLEQTKEV 549
>sp|Q96MT1|RN145_HUMAN RING finger protein 145 OS=Homo sapiens GN=RNF145 PE=2 SV=2
Length = 663
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 237 KGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAKAKKLLCNHLFHLACLRSWL 296
K F+ R A+ + +LP AT E+L ++D CAIC + M A C+H FH CL+ WL
Sbjct: 507 KSFLLRRDAVNKI-KSLPIATKEQLEKHNDICAICYQDMKSAVITPCSHFFHAGCLKKWL 565
Query: 297 DQGLNEMYSCPTCR 310
+ E +CP C
Sbjct: 566 --YVQE--TCPLCH 575
>sp|Q7ZWF4|RN145_DANRE RING finger protein 145 OS=Danio rerio GN=rnf145 PE=2 SV=1
Length = 685
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 21/120 (17%)
Query: 248 HLHAALPDATSEELRAYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCP 307
H ++P A++ +L+ ++D C+IC + M A C+H FH ACL+ WL + E +CP
Sbjct: 517 HKIQSMPTASTLQLQQHNDICSICFQDMKSAVITPCSHFFHAACLKKWLY--VQE--TCP 572
Query: 308 TCRKPLFVGRREIEANSRPGEVSSDEQLARQLSMGLDRQNNTGQTLPTGVFPNQTQPPVE 367
C L + +++ S PG + A Q P V Q QP VE
Sbjct: 573 LCHGQL---KSQLQPTSSPGTPTQGTPAANQ--------------NPREVEQEQRQPQVE 615
>sp|Q5SWK7|RN145_MOUSE RING finger protein 145 OS=Mus musculus GN=Rnf145 PE=2 SV=1
Length = 663
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 237 KGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAKAKKLLCNHLFHLACLRSWL 296
K F+ R A+ + + LP AT E+L ++D CAIC + M A C+H FH CL+ W
Sbjct: 507 KSFLLRRDAVNKIKS-LPVATQEQLEKHNDICAICYQDMKSAVITPCSHFFHAGCLKKW- 564
Query: 297 DQGLNEMYSCPTCR 310
L +CP C
Sbjct: 565 ---LYVQDTCPLCH 575
>sp|A8WWR3|HRDL1_CAEBR E3 ubiquitin-protein ligase hrd-like protein 1 OS=Caenorhabditis
briggsae GN=hrdl-1 PE=3 SV=1
Length = 578
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/303 (21%), Positives = 119/303 (39%), Gaps = 45/303 (14%)
Query: 14 FGELYPAETRKFVERLINYVIYKGTFLPLVIPPTVFQAGL-WSVWLTVLCSLKMFQALAR 72
F EL E + ++Y++ +L +V P + W +W V L Q +
Sbjct: 125 FKELSRQEEVAARQAFLSYILLTIVYLSVVTGPQKGHRVMPWMIWGGVCGFLSHLQFVTC 184
Query: 73 DRLERLNASPSATPWTYFRVFSALLFVLAVDIFWIRMCLLLFKTLDSSMFLLLFFEPLSV 132
RL+ SPS + RV LF+ V I M + L+ +LL+F+ L
Sbjct: 185 QRLKY--TSPSCDRGSQ-RVSFISLFLFFVSIAMTFMVSRFQQHLEWQPAVLLYFDCLLA 241
Query: 133 AFETMQAILVHGFQLLDIWLHHSAGNSTNCARSKFFDTLAAGSLLEWKGILIRNFGFFLD 192
F + + F +++ + + +R+F ++L+
Sbjct: 242 VFRSTYIL---------------------------FRCISSSRVFSFNPDSVRHFNYWLE 274
Query: 193 MAT-----LLMALGHYIHIWWLRGMAFHLVDAILFLNIRALLSAIIKRIKGFIKLRIALG 247
+AT LL L + + G+ +L +++ + + +++ +
Sbjct: 275 LATNFACELLQFLSYAQLFVFAPGL--NLTSIFFLYHMKLTYNCMREQLGRHRTHKKIFE 332
Query: 248 HLHAALPDATSEELRAYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCP 307
H+ +A P + DD C +C E + +++L C+H FH CL WL Q SCP
Sbjct: 333 HIESAYPSVKAAN---SDDRCIVCWELLGTSRRLPCSHQFHDWCLMWWLAQD----SSCP 385
Query: 308 TCR 310
TCR
Sbjct: 386 TCR 388
Score = 36.6 bits (83), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 460 GGAHARSTSRSANENIANILAMAETVREVLPHMPEDLIFQDLQRTNSATITVNNLLQ 516
G + R+A + +M ETV E+ P M + I DL+++ SA T+ N+L+
Sbjct: 430 GSSFGNIFGRAAEPTQEQLQSMLETVLEMFPQMSPETILADLRQSGSAQSTIENILE 486
>sp|Q0IJ20|RN145_XENTR RING finger protein 145 OS=Xenopus tropicalis GN=rnf145 PE=2 SV=1
Length = 695
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 64/144 (44%), Gaps = 10/144 (6%)
Query: 237 KGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAKAKKLLCNHLFHLACLRSWL 296
K F+ R A+ + + LP AT E+L ++D C+IC + M A C+H FH CL+ WL
Sbjct: 507 KSFLLRRDAVNKIKS-LPVATKEQLEQHNDICSICYQDMNSAVITPCSHFFHPGCLKKWL 565
Query: 297 DQGLNEMYSCPTCRKPLFVGRREIEANSRPGEVSSDEQLARQLSMG-LDRQNNTGQTLPT 355
+ E +CP C L ++ S EQ A +G + R T T P
Sbjct: 566 Y--VQE--TCPLCHCQLKSLSQQATGESGSSTNPVSEQSATNPPLGPVSRAEVT--TEPL 619
Query: 356 GVFPNQTQPPVEGSPWRNAGLDSS 379
P T+ +E P + + S
Sbjct: 620 AAVP--TRSALEQEPTMDIKVSGS 641
>sp|Q5RBT7|RN139_PONAB E3 ubiquitin-protein ligase RNF139 OS=Pongo abelii GN=RNF139 PE=2
SV=1
Length = 664
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 237 KGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAKAKKLL-CNHLFHLACLRSW 295
K F+ R A+ +++ LP+ L+ +D CAIC + ++ CNH FH CLR W
Sbjct: 517 KTFMNRRTAVKKINS-LPEIKGSRLQEINDVCAICYHEFTTSARITPCNHYFHALCLRKW 575
Query: 296 LDQGLNEMYSCPTCRKPLFVGRREIEANS 324
L +CP C + +++ +I+ NS
Sbjct: 576 ----LYIQDTCPMCHQKVYI-EDDIKDNS 599
>sp|Q8WU17|RN139_HUMAN E3 ubiquitin-protein ligase RNF139 OS=Homo sapiens GN=RNF139 PE=1
SV=1
Length = 664
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 237 KGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAKAKKLL-CNHLFHLACLRSW 295
K F+ R A+ +++ LP+ L+ +D CAIC + ++ CNH FH CLR W
Sbjct: 517 KTFMNRRTAVKKINS-LPEIKGSRLQEINDVCAICYHEFTTSARITPCNHYFHALCLRKW 575
Query: 296 LDQGLNEMYSCPTCRKPLFVGRREIEANS 324
L +CP C + +++ +I+ NS
Sbjct: 576 ----LYIQDTCPMCHQKVYI-EDDIKDNS 599
>sp|Q5BIY5|RN145_XENLA RING finger protein 145 OS=Xenopus laevis GN=rnf145 PE=2 SV=1
Length = 695
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 237 KGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAKAKKLLCNHLFHLACLRSWL 296
K F+ R A+ + + LP +T E+L ++D C+IC + M A C+H FH CL+ WL
Sbjct: 507 KSFLLRRDAVNKIKS-LPVSTKEQLEQHNDICSICYQDMNSAVITPCSHFFHPGCLKKWL 565
Query: 297 DQGLNEMYSCPTCRKPL 313
+ E +CP C L
Sbjct: 566 --YVQE--TCPLCHCQL 578
>sp|Q91YL2|RN126_MOUSE RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1
Length = 313
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 7/50 (14%)
Query: 267 ECAICREPMA---KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 313
EC +C+E A ++L CNHLFH +C+ WL+Q SCP CRK L
Sbjct: 230 ECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ----HDSCPVCRKSL 275
>sp|Q8RXD3|AIP2_ARATH E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana GN=AIP2
PE=1 SV=1
Length = 310
Score = 48.9 bits (115), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Query: 257 TSEELRAY--DDECAICREPMA---KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRK 311
T E L+ + + EC IC+E + K ++L C H FH CL+ WLD E SCP CR
Sbjct: 217 TEELLKKFGAEAECCICKENLVIGDKMQELPCKHTFHPPCLKPWLD----EHNSCPICRH 272
Query: 312 PLFVGRREIE 321
L ++ E
Sbjct: 273 ELPTDDQKYE 282
>sp|Q9BV68|RN126_HUMAN RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1
Length = 326
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 7/50 (14%)
Query: 267 ECAICREPMA---KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 313
EC +C++ A + ++L CNHLFH C+ WL+Q SCP CRK L
Sbjct: 228 ECPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQ----HDSCPVCRKSL 273
>sp|Q08109|HRD1_YEAST ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRD1 PE=1
SV=1
Length = 551
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 20/83 (24%)
Query: 248 HLHAALPDATSEELR--AYDDE-CAICREPM-------------AKAKKLLCNHLFHLAC 291
L L T E+L+ A DD C IC + + K K+L C H+ HL+C
Sbjct: 326 QLDDTLVTVTVEQLQNSANDDNICIICMDELIHSPNQQTWKNKNKKPKRLPCGHILHLSC 385
Query: 292 LRSWLDQGLNEMYSCPTCRKPLF 314
L++W+++ +CP CR P+F
Sbjct: 386 LKNWMERS----QTCPICRLPVF 404
>sp|Q8TEB7|RN128_HUMAN E3 ubiquitin-protein ligase RNF128 OS=Homo sapiens GN=RNF128 PE=1
SV=1
Length = 428
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 12/132 (9%)
Query: 243 RIALGHLHAALPDATSEELRAYDDECAICRE---PMAKAKKLLCNHLFHLACLRSWLDQG 299
+ A+G L +E+ D CA+C E P + L CNH+FH C+ W
Sbjct: 252 KKAIGRLQLRTLKQGDKEIGPDGDSCAVCIELYKPNDLVRILTCNHIFHKTCVDPW---- 307
Query: 300 LNEMYSCPTCRKPLFVGRREIEANSRPGEVSSDEQLARQLSMGLD--RQNNTGQTLPTGV 357
L E +CP C+ + IE + G VS ++ ++S ++N +T +G
Sbjct: 308 LLEHRTCPMCKCDILKALG-IEVDVEDGSVSLQVPVSNEISNSASSHEEDNRSETASSGY 366
Query: 358 FPNQ--TQPPVE 367
Q +PP+E
Sbjct: 367 ASVQGTDEPPLE 378
>sp|Q95K04|RN133_MACFA E3 ubiquitin-protein ligase RNF133 OS=Macaca fascicularis GN=RNF133
PE=2 SV=1
Length = 376
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 12/114 (10%)
Query: 242 LRIALGHLHAALPDATSEELRAYDDECAICRE---PMAKAKKLLCNHLFHLACLRSW-LD 297
L+ A G L + EE+ D C IC E P + L C H FH C+ W L
Sbjct: 230 LQNAFGQLQLRVVKEGDEEINPNGDSCVICFEHYKPNDIVRILTCKHFFHKNCIDPWILS 289
Query: 298 QGLNEMYSCPTCRKPLF--VG-RREIEANSRPGEVSSDEQLARQLSMGLDRQNN 348
G +CP C+ + +G + ++E + P +V +L LS + NN
Sbjct: 290 HG-----TCPICKCDILKVLGIQVDVENGTEPLQVLMSSELCETLSPSEEETNN 338
>sp|Q29RU0|RN128_BOVIN E3 ubiquitin-protein ligase RNF128 OS=Bos taurus GN=RNF128 PE=2
SV=1
Length = 431
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 12/132 (9%)
Query: 243 RIALGHLHAALPDATSEELRAYDDECAICRE---PMAKAKKLLCNHLFHLACLRSWLDQG 299
+ A+G L +E+ D CA+C E P + L CNH+FH C+ W
Sbjct: 255 KKAIGRLQLRTQKQGDKEIGPDGDSCAVCIELYKPNDLVRILTCNHVFHKTCVDPW---- 310
Query: 300 LNEMYSCPTCRKPLFVGRREIEANSRPGEVSSDEQLARQLSMGLD--RQNNTGQTLPTGV 357
L E +CP C+ + IE + G VS ++ + S ++N +T +G
Sbjct: 311 LLEHRTCPMCKCDILKALG-IEVDVEDGSVSLQVPVSNETSSNASPHEEDNRSETASSGY 369
Query: 358 FPNQ--TQPPVE 367
Q +PP+E
Sbjct: 370 ASVQGADEPPLE 381
>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1
Length = 312
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 258 SEELRAYDDECAICREPMA---KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 313
+EE + EC +C+E ++L CNHLFH C+ WL+Q +CP CRK L
Sbjct: 218 TEEHVGFGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQ----HDTCPVCRKSL 272
>sp|Q5RF74|RN128_PONAB E3 ubiquitin-protein ligase RNF128 OS=Pongo abelii GN=RNF128 PE=2
SV=1
Length = 428
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 12/132 (9%)
Query: 243 RIALGHLHAALPDATSEELRAYDDECAICRE---PMAKAKKLLCNHLFHLACLRSWLDQG 299
+ A+G L E+ D CA+C E P + L CNH+FH C+ W
Sbjct: 252 KKAIGRLQLRTLKQGDREIGPDGDSCAVCIELYKPNDLVRILTCNHIFHKTCVDPW---- 307
Query: 300 LNEMYSCPTCRKPLFVGRREIEANSRPGEVSSDEQLARQLSMGLD--RQNNTGQTLPTGV 357
L E +CP C+ + IE + G VS ++ ++S ++N +T +G
Sbjct: 308 LLEHRTCPMCKCDILKALG-IEVDVEDGSVSLQVPVSNEISNSASSHEEDNRSETASSGY 366
Query: 358 FPNQ--TQPPVE 367
Q +PP+E
Sbjct: 367 ASVQGADEPPLE 378
>sp|Q9LX93|ATL55_ARATH E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana GN=ATL55
PE=1 SV=1
Length = 301
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 12/90 (13%)
Query: 267 ECAICREPMAKAKKLL----CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV----GRR 318
EC++C + + L C+H FHL C+ +WL N CP CR P+ + +
Sbjct: 134 ECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKN----CPLCRAPVLLITEPPHQ 189
Query: 319 EIEANSRPGEVSSDEQLARQLSMGLDRQNN 348
E E N +P SS++ RQ S R +N
Sbjct: 190 ETETNHQPDSESSNDLRGRQDSSRSRRNHN 219
>sp|Q14B02|RN133_MOUSE E3 ubiquitin-protein ligase RNF133 OS=Mus musculus GN=Rnf133 PE=1
SV=1
Length = 382
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 81/199 (40%), Gaps = 27/199 (13%)
Query: 126 FFEPLSVAFETMQAILVHGFQLLDIWLHHSAGNSTNCARSKFFDTLAAGSLLEWKGILIR 185
F + + VA E HG + + I+ GN + F+ + + KG+ I
Sbjct: 112 FTQKIKVASE-------HGARGVIIYNFPGTGNQVFPMSHQAFEDIVVVMIGNIKGMEIL 164
Query: 186 NFGFFLDMATLLMALGHYIHIWWLRG--MAFHLVDA-----ILFLNIRALLSAII--KRI 236
+ T+++ +G H+ WL ++F +V F +IR L A I +R
Sbjct: 165 HLIRKGVHVTVMVEVGRK-HVIWLNHYFVSFMIVTTATLAYFTFYHIRRLWVARIENRRW 223
Query: 237 KGFIK-LRIALGHLHAALPDATSEELRAYDDECAICRE---PMAKAKKLLCNHLFHLACL 292
K + L+ A G L + EE+ D C IC E P + L C H FH C+
Sbjct: 224 KRLTRELKKAFGQLQVRVLKEGDEEVNPNADSCVICFEAYKPNEIVRILTCKHFFHKNCI 283
Query: 293 RSW-LDQGLNEMYSCPTCR 310
W L G +CP C+
Sbjct: 284 DPWILAHG-----TCPMCK 297
>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1
Length = 311
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 20/86 (23%)
Query: 231 AIIKRIKGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMA---KAKKLLCNHLF 287
A ++I+ ++I H+ + L EC +C+E ++L CNHLF
Sbjct: 203 ADTEKIQALPTIQITEEHVGSGL-------------ECPVCKEDYTVGESVRQLPCNHLF 249
Query: 288 HLACLRSWLDQGLNEMYSCPTCRKPL 313
H C+ WL+Q +CP CRK L
Sbjct: 250 HNDCIIPWLEQ----HDTCPVCRKSL 271
>sp|P90859|HRDL1_CAEEL E3 ubiquitin-protein ligase hrd-like protein 1 OS=Caenorhabditis
elegans GN=hrdl-1 PE=1 SV=2
Length = 564
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 265 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRREIEANS 324
DD C +C E + +++L C+H FH CL WL Q SCPTCR + + +I
Sbjct: 332 DDRCVVCWELLGTSRRLPCSHQFHDWCLMWWLAQD----SSCPTCRCTIPSPQDQIR--- 384
Query: 325 RPGEVSSDEQL 335
+P EV + +L
Sbjct: 385 QPPEVGNSTRL 395
Score = 39.3 bits (90), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 469 RSANENIANILAMAETVREVLPHMPEDLIFQDLQRTNSATITVNNLLQ 516
R+A + M E VRE+ P M D+I DL+++ SA T+ N+L+
Sbjct: 424 RAAEPTEEQLQTMLEQVREMFPQMSVDIIMTDLRQSGSAQSTIENILE 471
>sp|Q0II22|RN126_BOVIN RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1
Length = 313
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
Query: 267 ECAICREPMA---KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 313
EC +C++ ++L CNHLFH C+ WL+Q SCP CRK L
Sbjct: 231 ECPVCKDDYGLGEHVRQLPCNHLFHDGCIVPWLEQ----HDSCPVCRKSL 276
>sp|Q6AY01|RN133_RAT E3 ubiquitin-protein ligase RNF133 OS=Rattus norvegicus GN=Rnf133
PE=2 SV=1
Length = 381
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 71/172 (41%), Gaps = 23/172 (13%)
Query: 194 ATLLMALGHYIHIWWLRG--MAFHLVDA-----ILFLNIRALLSAII--KRIKGFIK-LR 243
T+++ +G H+ WL ++F +V F +IR L A I +R K + L+
Sbjct: 173 VTVMVEVGRK-HVIWLNHYFVSFMIVTTATLAYFTFYHIRRLWVARIEDRRWKRLTRELK 231
Query: 244 IALGHLHAALPDATSEELRAYDDECAICRE---PMAKAKKLLCNHLFHLACLRSW-LDQG 299
A G L + EE+ D C IC E P + L C H FH C+ W L G
Sbjct: 232 KAFGQLQVRILKEGDEEVSPNADSCVICFEAYKPNEIVRILTCKHFFHKNCIDPWILAHG 291
Query: 300 LNEMYSCPTCRKPLFVG---RREIEANSRPGEVSSDEQLARQLSMGLDRQNN 348
+CP C+ + + +IE S +V +L S + NN
Sbjct: 292 -----TCPMCKCDILKALGIQMDIEDGSDSLQVLMSNELPGTFSAMEEELNN 338
>sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1
Length = 312
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 20/83 (24%)
Query: 234 KRIKGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAKA---KKLLCNHLFHLA 290
++I+ ++I H+ + L EC +C+E ++L CNHLFH
Sbjct: 207 EKIQALPTIQITEEHVGSGL-------------ECPVCKEDYTVGECVRQLPCNHLFHND 253
Query: 291 CLRSWLDQGLNEMYSCPTCRKPL 313
C+ WL+Q +CP CRK L
Sbjct: 254 CIIPWLEQ----HDTCPVCRKSL 272
>sp|Q570X5|ATL58_ARATH RING-H2 finger protein ATL58 OS=Arabidopsis thaliana GN=ATL58 PE=2
SV=1
Length = 261
Score = 45.8 bits (107), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Query: 259 EELRAYDDECAIC---REPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 314
E D +C++C +P K +++ +C H FH+ C+ W L +CP CR L
Sbjct: 91 ESFTVMDSQCSVCLGDYQPNDKLQQIPVCKHTFHMDCIDLW----LTSHTTCPLCRLALI 146
Query: 315 VGR-REIEANSRPGEVSSDEQLARQ 338
R R+ + + P VS DE+++ Q
Sbjct: 147 PSRSRQSQDDPVPSLVSPDEEVSSQ 171
>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1
SV=1
Length = 305
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 7/50 (14%)
Query: 267 ECAICREPMA---KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 313
EC +C+E K ++L CNH FH +C+ WL+ L++ +CP CRK L
Sbjct: 228 ECPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLE--LHD--TCPVCRKSL 273
>sp|Q8AWW4|RN128_XENLA E3 ubiquitin-protein ligase RNF128 OS=Xenopus laevis GN=rnf128 PE=2
SV=2
Length = 404
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 13/98 (13%)
Query: 234 KRIKGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAKA---KKLLCNHLFHLA 290
KR+K + + A+G L + L D CA+C EP + + L CNH FH
Sbjct: 228 KRLKA--EAKKAIGKLQLRTIKQGDKVLGPDGDSCAVCIEPYKPSDVVRILTCNHFFHKN 285
Query: 291 CLRSWLDQGLNEMYSCPTCR----KPLFVGRREIEANS 324
C+ W L E +CP C+ K L + E E S
Sbjct: 286 CIDPW----LLEHRTCPMCKCDILKSLGIAEDEEEGTS 319
>sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1
PE=2 SV=1
Length = 338
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 252 ALP--DATSEELRAYDDECAICR---EPMAKAKKLLCNHLFHLACLRSWLDQGLNEMY-S 305
ALP + T L + ++CA+C E +AK++ C HL+H CL WL E++ S
Sbjct: 206 ALPLVNITKSNLNSEFNQCAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWL-----ELHNS 260
Query: 306 CPTCRKPLFVGRREIEANSRPGEVSS---DEQLARQLSMGLDR 345
CP CR L + E R + +S D + Q S G +R
Sbjct: 261 CPVCRHELPTDDPDYERRVRGAQGTSGGNDGDNSGQRSDGDNR 303
>sp|Q9VE61|RN181_DROME E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila
melanogaster GN=CG7694 PE=2 SV=1
Length = 147
Score = 45.1 bits (105), Expect = 0.001, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 16/76 (21%)
Query: 265 DDECAICREPMAKAKK---LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR---- 317
D EC++C+EP + +K L C H FH C+ W L + SCP CR L
Sbjct: 67 DLECSVCKEPAEEGQKYRILPCKHEFHEECILLW----LKKTNSCPLCRYELETDDPVYE 122
Query: 318 -----REIEANSRPGE 328
R+ EAN R E
Sbjct: 123 ELRRFRQDEANRRERE 138
>sp|Q8W571|ATL32_ARATH RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2
SV=3
Length = 323
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 26/124 (20%)
Query: 252 ALPDATSEELRAYDDECAICREPMAKAKKL----LCNHLFHLACLRSWLDQGLNEMYSCP 307
A ++ + D ECAIC + + + +CNHLFH+ C+ +W L +CP
Sbjct: 108 AYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTW----LYSHATCP 163
Query: 308 TCRK----------------PLFVGRREIEANSRPGEV--SSDEQLARQLSMGLDRQNNT 349
CR PL R + + EV S +L+ ++S R N+T
Sbjct: 164 VCRSNLTAKSNKPGDEDDGVPLAAMRDHVVVDIETVEVAKSHHRRLSSEISGKFPRSNST 223
Query: 350 GQTL 353
G ++
Sbjct: 224 GHSM 227
>sp|Q9LZV8|ATL74_ARATH RING-H2 finger protein ATL74 OS=Arabidopsis thaliana GN=ATL74 PE=2
SV=1
Length = 159
Score = 45.1 bits (105), Expect = 0.002, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 258 SEELRAYDDECAICREPMAKAKKLL----CNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 313
S E++ ECAIC A +++ CNH FH++C+ +W L SCP CR L
Sbjct: 95 SGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTW----LVSHSSCPNCRHSL 150
>sp|Q9FGJ6|ATL79_ARATH RING-H2 finger protein ATL79 OS=Arabidopsis thaliana GN=ATL79 PE=2
SV=1
Length = 166
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 24/120 (20%)
Query: 220 ILFLNIRALLSAI--IKRIKGFIKLRIALGHLHAALPDATSE--------------ELRA 263
+L L I AL+ A+ I+ F++ + H P+A + EL
Sbjct: 43 LLILVISALICALSLYAAIRCFLRPTLETEDDHKPDPEAAASSTPTTPTLVYSSDLELAG 102
Query: 264 YDDECAICREPMAKAKKLL----CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRRE 319
+ ECAIC + + + C H FH+ C+ W L+ SCPTCR +F E
Sbjct: 103 AEAECAICLSEFEQGESIQVLEKCQHGFHVKCIHKW----LSTRSSCPTCRTSIFSQHSE 158
>sp|Q8N7C7|RN148_HUMAN RING finger protein 148 OS=Homo sapiens GN=RNF148 PE=2 SV=2
Length = 305
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
Query: 212 MAFHLVDAILFLNIRALLSAIIKRIKGFIKLRIALGHLHAALPDATSEELRAYDDECAIC 271
+A+ +D + L R S +R + ++ A+ L + EEL +D C +C
Sbjct: 202 IAYFYLDCVWRLTPRVPNSFTRRRSQIKTDVKKAIDQLQLRVLKEGDEELDLNEDNCVVC 261
Query: 272 ---REPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCR 310
+P + L C H FH AC+ WL +CP C+
Sbjct: 262 FDTYKPQDVVRILTCKHFFHKACIDPWLL----AHRTCPMCK 299
>sp|Q2TA44|RN148_BOVIN RING finger protein 148 OS=Bos taurus GN=RNF148 PE=2 SV=1
Length = 303
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 242 LRIALGHLHAALPDATSEELRAYDDECAIC---REPMAKAKKLLCNHLFHLACLRSWLDQ 298
+R A+G L + +EL +D C +C +P + L C H+FH AC+ WL
Sbjct: 230 VRKAIGKLQLRVLQEGDKELEPDEDNCVVCFDIYKPQDVVRILTCKHIFHKACIDPWLL- 288
Query: 299 GLNEMYSCPTCR 310
+CP C+
Sbjct: 289 ---AHRTCPMCK 297
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.137 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 190,496,437
Number of Sequences: 539616
Number of extensions: 7907105
Number of successful extensions: 28689
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 456
Number of HSP's that attempted gapping in prelim test: 28373
Number of HSP's gapped (non-prelim): 604
length of query: 517
length of database: 191,569,459
effective HSP length: 122
effective length of query: 395
effective length of database: 125,736,307
effective search space: 49665841265
effective search space used: 49665841265
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 64 (29.3 bits)