Query 010130
Match_columns 517
No_of_seqs 505 out of 2335
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 21:24:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010130.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010130hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5243 HRD1 HRD ubiquitin lig 100.0 4.6E-38 9.9E-43 309.1 26.4 279 1-315 53-346 (491)
2 KOG0802 E3 ubiquitin ligase [P 100.0 3.7E-34 8E-39 312.2 22.0 471 4-511 51-534 (543)
3 KOG4628 Predicted E3 ubiquitin 99.3 3.1E-12 6.6E-17 129.5 8.3 74 240-316 202-280 (348)
4 PF13639 zf-RING_2: Ring finge 99.2 5.4E-12 1.2E-16 90.9 1.7 41 266-310 1-44 (44)
5 KOG0317 Predicted E3 ubiquitin 99.1 4.9E-11 1.1E-15 116.2 3.1 51 263-317 237-287 (293)
6 PHA02929 N1R/p28-like protein; 99.1 1.3E-10 2.9E-15 112.9 5.2 47 264-314 173-227 (238)
7 KOG0823 Predicted E3 ubiquitin 99.1 6.7E-11 1.4E-15 112.2 2.8 54 263-317 45-98 (230)
8 PF15227 zf-C3HC4_4: zinc fing 99.0 1.3E-10 2.9E-15 82.6 2.1 42 268-309 1-42 (42)
9 PLN03208 E3 ubiquitin-protein 99.0 2.3E-10 5.1E-15 106.8 4.0 54 264-317 17-82 (193)
10 PF12678 zf-rbx1: RING-H2 zinc 99.0 1.9E-10 4E-15 92.1 2.4 43 264-310 18-73 (73)
11 PF13920 zf-C3HC4_3: Zinc fing 98.8 1.5E-09 3.1E-14 80.4 2.4 46 265-314 2-48 (50)
12 COG5540 RING-finger-containing 98.8 1.4E-09 3E-14 106.2 2.7 49 264-315 322-373 (374)
13 PF13923 zf-C3HC4_2: Zinc fing 98.8 2.8E-09 6E-14 74.6 2.0 38 268-309 1-39 (39)
14 PF12861 zf-Apc11: Anaphase-pr 98.8 3.6E-09 7.9E-14 85.7 2.6 51 264-315 20-83 (85)
15 cd00162 RING RING-finger (Real 98.7 9.4E-09 2E-13 73.2 3.3 44 267-313 1-45 (45)
16 smart00504 Ubox Modified RING 98.7 1.2E-08 2.5E-13 79.1 3.7 46 266-315 2-47 (63)
17 PHA02926 zinc finger-like prot 98.6 2E-08 4.3E-13 94.8 3.6 53 263-315 168-231 (242)
18 PF00097 zf-C3HC4: Zinc finger 98.6 2E-08 4.3E-13 71.0 2.3 40 268-309 1-41 (41)
19 KOG1734 Predicted RING-contain 98.6 1.1E-06 2.3E-11 85.0 14.7 51 264-316 223-283 (328)
20 KOG0320 Predicted E3 ubiquitin 98.6 2.5E-08 5.3E-13 90.9 2.3 48 265-316 131-180 (187)
21 KOG0804 Cytoplasmic Zn-finger 98.6 5.6E-09 1.2E-13 107.1 -2.5 108 266-392 176-299 (493)
22 KOG0828 Predicted E3 ubiquitin 98.5 6.3E-07 1.4E-11 92.9 11.0 50 263-315 569-635 (636)
23 smart00184 RING Ring finger. E 98.5 6.7E-08 1.5E-12 66.3 2.7 39 268-309 1-39 (39)
24 COG5574 PEX10 RING-finger-cont 98.5 4.8E-08 1E-12 94.4 2.2 50 264-316 214-264 (271)
25 TIGR00599 rad18 DNA repair pro 98.5 7E-08 1.5E-12 100.5 3.5 48 264-315 25-72 (397)
26 PF13445 zf-RING_UBOX: RING-ty 98.5 5.7E-08 1.2E-12 69.2 1.8 39 268-307 1-43 (43)
27 KOG2164 Predicted E3 ubiquitin 98.4 1.2E-07 2.6E-12 99.4 3.2 55 265-319 186-241 (513)
28 PF14634 zf-RING_5: zinc-RING 98.3 3.1E-07 6.8E-12 66.0 2.0 41 267-311 1-44 (44)
29 KOG0287 Postreplication repair 98.3 2.1E-07 4.5E-12 92.4 0.5 48 266-317 24-71 (442)
30 PF04564 U-box: U-box domain; 98.2 4.5E-07 9.8E-12 72.6 2.0 49 265-316 4-52 (73)
31 KOG0311 Predicted E3 ubiquitin 98.1 8.5E-07 1.8E-11 88.9 0.9 51 264-317 42-93 (381)
32 COG5432 RAD18 RING-finger-cont 98.1 1.2E-06 2.6E-11 85.4 1.8 48 265-316 25-72 (391)
33 COG5194 APC11 Component of SCF 98.1 2.6E-06 5.6E-11 67.3 2.8 31 282-316 53-83 (88)
34 PF02845 CUE: CUE domain; Int 98.0 4.7E-06 1E-10 59.2 3.7 39 479-517 2-41 (42)
35 smart00546 CUE Domain that may 98.0 6.7E-06 1.4E-10 58.7 4.5 40 478-517 2-42 (43)
36 COG5219 Uncharacterized conser 97.9 5.1E-06 1.1E-10 91.9 3.0 50 263-314 1467-1523(1525)
37 KOG1493 Anaphase-promoting com 97.9 3.6E-06 7.8E-11 65.9 1.3 50 264-314 19-81 (84)
38 KOG2177 Predicted E3 ubiquitin 97.9 3.9E-06 8.5E-11 84.2 1.8 44 263-310 11-54 (386)
39 TIGR00570 cdk7 CDK-activating 97.8 1.2E-05 2.6E-10 80.8 3.8 50 265-317 3-57 (309)
40 KOG0824 Predicted E3 ubiquitin 97.8 7.4E-06 1.6E-10 80.7 2.1 48 265-315 7-54 (324)
41 KOG1785 Tyrosine kinase negati 97.8 2.1E-05 4.6E-10 79.8 5.3 47 266-314 370-416 (563)
42 KOG4159 Predicted E3 ubiquitin 97.8 1.3E-05 2.8E-10 83.9 3.8 49 263-315 82-130 (398)
43 PF11793 FANCL_C: FANCL C-term 97.8 5.6E-06 1.2E-10 65.7 0.7 51 265-315 2-67 (70)
44 KOG4172 Predicted E3 ubiquitin 97.8 6.8E-06 1.5E-10 60.2 0.5 47 265-314 7-54 (62)
45 KOG2930 SCF ubiquitin ligase, 97.8 8E-06 1.7E-10 67.8 0.9 30 282-315 80-109 (114)
46 KOG3970 Predicted E3 ubiquitin 97.8 2.2E-05 4.8E-10 74.0 3.8 87 263-361 48-140 (299)
47 PF13705 TRC8_N: TRC8 N-termin 97.7 0.00055 1.2E-08 73.1 14.1 104 56-162 348-452 (508)
48 PF14835 zf-RING_6: zf-RING of 97.7 1.1E-05 2.4E-10 61.6 0.6 46 266-317 8-54 (65)
49 KOG4265 Predicted E3 ubiquitin 97.6 3.3E-05 7.1E-10 78.3 2.2 49 263-315 288-337 (349)
50 smart00744 RINGv The RING-vari 97.5 5.6E-05 1.2E-09 55.5 2.6 42 267-310 1-49 (49)
51 KOG0827 Predicted E3 ubiquitin 97.5 3.9E-05 8.4E-10 77.9 1.7 48 265-313 4-55 (465)
52 KOG2114 Vacuolar assembly/sort 97.4 0.00011 2.4E-09 81.3 3.5 93 214-313 789-882 (933)
53 KOG0978 E3 ubiquitin ligase in 97.4 6.9E-05 1.5E-09 82.7 1.7 49 265-316 643-691 (698)
54 KOG2879 Predicted E3 ubiquitin 97.2 0.0051 1.1E-07 60.3 11.9 50 263-314 237-287 (298)
55 KOG1645 RING-finger-containing 97.0 0.00036 7.8E-09 71.6 2.4 48 264-313 3-55 (463)
56 KOG1039 Predicted E3 ubiquitin 97.0 0.0004 8.7E-09 71.4 2.6 52 264-315 160-222 (344)
57 KOG1571 Predicted E3 ubiquitin 97.0 0.00078 1.7E-08 68.5 4.3 46 263-315 303-348 (355)
58 KOG0825 PHD Zn-finger protein 96.9 0.00042 9E-09 76.0 1.7 33 280-316 141-173 (1134)
59 KOG1002 Nucleotide excision re 96.8 0.00065 1.4E-08 71.5 2.5 52 265-316 536-588 (791)
60 COG5152 Uncharacterized conser 96.8 0.00042 9E-09 64.4 0.9 44 266-313 197-240 (259)
61 KOG0297 TNF receptor-associate 96.8 0.0006 1.3E-08 72.1 2.1 49 263-315 19-68 (391)
62 KOG1941 Acetylcholine receptor 96.7 0.0016 3.4E-08 66.5 4.4 47 264-312 364-414 (518)
63 KOG4445 Uncharacterized conser 96.6 0.00075 1.6E-08 66.6 1.2 52 265-316 115-188 (368)
64 COG5222 Uncharacterized conser 96.5 0.002 4.3E-08 63.5 3.2 44 265-311 274-318 (427)
65 PF11789 zf-Nse: Zinc-finger o 96.4 0.0012 2.5E-08 50.2 0.9 43 264-308 10-53 (57)
66 KOG2660 Locus-specific chromos 96.3 0.0016 3.4E-08 65.6 1.2 48 265-316 15-63 (331)
67 KOG4692 Predicted E3 ubiquitin 96.3 0.0034 7.3E-08 63.3 3.5 49 263-315 420-468 (489)
68 PF10367 Vps39_2: Vacuolar sor 96.2 0.011 2.3E-07 50.4 5.8 31 263-293 76-108 (109)
69 KOG1813 Predicted E3 ubiquitin 96.2 0.0017 3.7E-08 64.3 0.7 45 265-313 241-285 (313)
70 KOG4275 Predicted E3 ubiquitin 95.6 0.0028 6E-08 62.5 -0.3 42 265-314 300-342 (350)
71 KOG1814 Predicted E3 ubiquitin 95.5 0.0085 1.9E-07 61.9 2.8 54 259-312 178-238 (445)
72 PF14447 Prok-RING_4: Prokaryo 95.4 0.0073 1.6E-07 44.9 1.3 47 265-317 7-53 (55)
73 KOG0826 Predicted E3 ubiquitin 95.3 0.032 6.9E-07 56.2 5.7 47 263-313 298-345 (357)
74 PHA02825 LAP/PHD finger-like p 95.2 0.015 3.4E-07 52.7 3.1 50 263-315 6-60 (162)
75 KOG1428 Inhibitor of type V ad 95.0 0.01 2.3E-07 68.9 1.5 53 263-315 3484-3545(3738)
76 PF11547 E3_UbLigase_EDD: E3 u 94.9 0.056 1.2E-06 38.8 4.3 36 480-515 11-47 (53)
77 PHA02862 5L protein; Provision 94.6 0.021 4.6E-07 50.9 2.2 48 265-315 2-54 (156)
78 COG5236 Uncharacterized conser 94.6 0.022 4.8E-07 57.4 2.6 57 253-313 49-107 (493)
79 KOG3039 Uncharacterized conser 94.5 0.035 7.5E-07 53.7 3.5 51 264-318 220-274 (303)
80 PF14570 zf-RING_4: RING/Ubox 94.5 0.026 5.7E-07 41.0 2.0 42 268-312 1-46 (48)
81 KOG2034 Vacuolar sorting prote 94.4 0.044 9.5E-07 61.9 4.6 35 263-297 815-851 (911)
82 PF12906 RINGv: RING-variant d 94.3 0.023 5.1E-07 41.3 1.5 40 268-309 1-47 (47)
83 KOG3268 Predicted E3 ubiquitin 94.1 0.036 7.7E-07 51.0 2.5 51 266-316 166-230 (234)
84 PF10272 Tmpp129: Putative tra 94.0 0.078 1.7E-06 55.0 5.1 34 283-316 311-353 (358)
85 COG5175 MOT2 Transcriptional r 93.5 0.044 9.6E-07 55.2 2.3 51 264-317 13-67 (480)
86 KOG4185 Predicted E3 ubiquitin 93.4 0.043 9.4E-07 55.8 2.1 45 266-313 4-54 (296)
87 PF07800 DUF1644: Protein of u 93.0 0.3 6.5E-06 44.5 6.5 78 265-342 2-131 (162)
88 KOG1952 Transcription factor N 92.9 0.057 1.2E-06 60.5 2.2 52 260-311 186-244 (950)
89 PF05290 Baculo_IE-1: Baculovi 92.4 0.47 1E-05 41.9 6.8 50 266-316 81-134 (140)
90 KOG1001 Helicase-like transcri 92.4 0.044 9.6E-07 61.7 0.5 48 266-316 455-502 (674)
91 PHA03096 p28-like protein; Pro 92.1 0.073 1.6E-06 53.7 1.7 45 266-311 179-231 (284)
92 PF05883 Baculo_RING: Baculovi 91.1 0.064 1.4E-06 47.6 0.1 33 265-297 26-67 (134)
93 KOG1940 Zn-finger protein [Gen 90.9 0.13 2.7E-06 51.5 1.8 43 265-311 158-204 (276)
94 KOG2932 E3 ubiquitin ligase in 89.8 0.12 2.7E-06 51.6 0.8 41 267-313 92-133 (389)
95 KOG4367 Predicted Zn-finger pr 89.7 0.16 3.6E-06 52.8 1.6 36 264-299 3-38 (699)
96 KOG3161 Predicted E3 ubiquitin 89.7 0.13 2.8E-06 56.0 0.9 38 267-311 13-54 (861)
97 KOG4739 Uncharacterized protei 89.3 0.1 2.2E-06 50.8 -0.3 42 267-314 5-48 (233)
98 KOG0802 E3 ubiquitin ligase [P 89.3 0.24 5.2E-06 54.9 2.6 59 252-318 466-524 (543)
99 KOG0827 Predicted E3 ubiquitin 89.0 0.058 1.2E-06 55.4 -2.2 46 266-315 197-246 (465)
100 KOG3002 Zn finger protein [Gen 88.7 0.26 5.6E-06 50.2 2.1 42 266-315 49-92 (299)
101 PF08746 zf-RING-like: RING-li 88.3 0.3 6.6E-06 34.7 1.7 40 268-309 1-43 (43)
102 PF04641 Rtf2: Rtf2 RING-finge 88.2 0.37 8.1E-06 48.2 2.9 48 264-316 112-163 (260)
103 KOG0801 Predicted E3 ubiquitin 87.8 0.18 3.8E-06 45.8 0.3 31 259-289 171-204 (205)
104 KOG2817 Predicted E3 ubiquitin 87.7 1.2 2.6E-05 46.3 6.3 46 266-312 335-383 (394)
105 KOG0298 DEAD box-containing he 87.4 0.18 3.9E-06 59.2 0.1 43 266-312 1154-1197(1394)
106 KOG3800 Predicted E3 ubiquitin 86.9 0.43 9.3E-06 47.6 2.4 44 267-313 2-50 (300)
107 COG5183 SSM4 Protein involved 86.5 0.44 9.6E-06 53.3 2.4 52 263-316 10-68 (1175)
108 PF03854 zf-P11: P-11 zinc fin 85.7 0.26 5.7E-06 35.5 0.2 43 268-316 5-48 (50)
109 KOG3053 Uncharacterized conser 85.6 0.29 6.3E-06 47.8 0.5 51 264-314 19-82 (293)
110 KOG3899 Uncharacterized conser 84.9 0.44 9.6E-06 47.3 1.4 35 283-317 325-368 (381)
111 KOG1100 Predicted E3 ubiquitin 83.8 0.42 9.1E-06 46.1 0.7 39 268-314 161-200 (207)
112 KOG4362 Transcriptional regula 83.2 0.34 7.3E-06 54.0 -0.2 50 265-315 21-70 (684)
113 COG5220 TFB3 Cdk activating ki 81.2 0.71 1.5E-05 44.7 1.1 45 264-311 9-61 (314)
114 KOG0825 PHD Zn-finger protein 80.1 1.1 2.3E-05 50.3 2.1 49 265-313 96-153 (1134)
115 KOG0309 Conserved WD40 repeat- 75.0 1.7 3.6E-05 48.6 1.9 25 280-308 1045-1069(1081)
116 PF02891 zf-MIZ: MIZ/SP-RING z 73.9 2.5 5.4E-05 31.1 2.0 46 266-312 3-50 (50)
117 KOG4718 Non-SMC (structural ma 70.3 2.3 4.9E-05 40.6 1.3 45 266-314 182-227 (235)
118 smart00249 PHD PHD zinc finger 68.0 2 4.3E-05 29.9 0.4 43 267-309 1-47 (47)
119 KOG2066 Vacuolar assembly/sort 67.8 3.3 7.1E-05 46.8 2.1 36 263-298 782-824 (846)
120 PF06937 EURL: EURL protein; 66.3 6.3 0.00014 39.1 3.5 26 475-500 224-250 (285)
121 KOG1812 Predicted E3 ubiquitin 65.8 5.1 0.00011 42.4 3.1 35 265-299 146-184 (384)
122 KOG2068 MOT2 transcription fac 64.4 5.8 0.00012 40.6 3.0 46 266-315 250-299 (327)
123 KOG0943 Predicted ubiquitin-pr 64.1 13 0.00027 44.2 5.8 37 480-516 191-228 (3015)
124 KOG1609 Protein involved in mR 62.6 3.7 8E-05 41.8 1.3 49 265-315 78-135 (323)
125 KOG3039 Uncharacterized conser 60.6 5.2 0.00011 39.1 1.8 33 266-298 44-76 (303)
126 PF07191 zinc-ribbons_6: zinc- 60.5 0.97 2.1E-05 35.6 -2.6 40 266-314 2-41 (70)
127 KOG0269 WD40 repeat-containing 58.9 6.3 0.00014 44.4 2.3 38 267-308 781-820 (839)
128 KOG3579 Predicted E3 ubiquitin 58.9 6.4 0.00014 39.3 2.1 43 266-308 269-316 (352)
129 KOG1815 Predicted E3 ubiquitin 57.9 6.3 0.00014 42.6 2.1 36 264-299 69-105 (444)
130 PF00628 PHD: PHD-finger; Int 55.4 1.5 3.2E-05 32.0 -2.3 44 268-311 2-50 (51)
131 KOG3842 Adaptor protein Pellin 52.8 13 0.00028 37.7 3.1 52 264-315 340-415 (429)
132 PF04710 Pellino: Pellino; In 52.1 4.9 0.00011 42.0 0.1 48 263-313 275-338 (416)
133 COG5109 Uncharacterized conser 50.1 8.9 0.00019 38.8 1.5 44 266-310 337-383 (396)
134 PF04216 FdhE: Protein involve 48.9 6.4 0.00014 39.9 0.4 44 265-312 172-220 (290)
135 KOG3113 Uncharacterized conser 45.8 15 0.00032 36.2 2.3 48 264-317 110-161 (293)
136 smart00132 LIM Zinc-binding do 44.0 15 0.00033 24.2 1.6 35 267-313 1-37 (39)
137 PLN02400 cellulose synthase 43.3 1E+02 0.0023 36.8 8.9 47 265-314 36-89 (1085)
138 KOG3842 Adaptor protein Pellin 42.3 12 0.00027 37.8 1.2 49 261-312 286-350 (429)
139 PF00412 LIM: LIM domain; Int 40.8 20 0.00042 26.4 1.8 37 268-316 1-39 (58)
140 PF06844 DUF1244: Protein of u 40.5 16 0.00034 28.4 1.2 13 286-298 11-23 (68)
141 KOG0824 Predicted E3 ubiquitin 40.5 12 0.00026 37.8 0.8 46 264-313 104-150 (324)
142 PLN02189 cellulose synthase 38.2 36 0.00078 40.3 4.2 47 265-314 34-87 (1040)
143 PF10571 UPF0547: Uncharacteri 37.9 19 0.00041 22.7 1.1 21 267-287 2-24 (26)
144 PF13901 DUF4206: Domain of un 37.2 84 0.0018 30.1 6.0 39 264-311 151-197 (202)
145 PF07069 PRRSV_2b: Porcine rep 36.5 1.9E+02 0.0042 22.1 7.2 51 175-231 6-56 (73)
146 PLN02436 cellulose synthase A 35.5 47 0.001 39.5 4.6 47 265-314 36-89 (1094)
147 KOG4501 Transcription coactiva 35.0 71 0.0015 35.0 5.4 41 476-516 430-470 (707)
148 cd04718 BAH_plant_2 BAH, or Br 34.7 16 0.00034 33.3 0.5 28 287-314 2-29 (148)
149 PF14446 Prok-RING_1: Prokaryo 34.6 30 0.00065 25.9 1.9 30 264-293 4-37 (54)
150 PLN02638 cellulose synthase A 34.5 51 0.0011 39.2 4.7 47 265-314 17-70 (1079)
151 TIGR01562 FdhE formate dehydro 34.4 25 0.00054 36.0 2.0 43 265-311 184-232 (305)
152 KOG4185 Predicted E3 ubiquitin 32.7 21 0.00046 36.1 1.2 45 265-312 207-265 (296)
153 PRK03564 formate dehydrogenase 32.6 23 0.00049 36.3 1.4 44 264-311 186-234 (309)
154 PF10497 zf-4CXXC_R1: Zinc-fin 32.5 43 0.00093 28.7 2.8 47 265-311 7-69 (105)
155 KOG1829 Uncharacterized conser 32.3 15 0.00032 40.8 -0.1 24 281-311 535-558 (580)
156 PF14569 zf-UDP: Zinc-binding 31.9 52 0.0011 26.5 3.0 47 265-314 9-62 (80)
157 KOG3005 GIY-YIG type nuclease 31.9 23 0.00051 35.2 1.3 48 266-313 183-242 (276)
158 PLN02915 cellulose synthase A 31.7 68 0.0015 38.1 5.1 48 264-314 14-68 (1044)
159 PF04710 Pellino: Pellino; In 31.6 16 0.00034 38.4 0.0 50 265-314 328-401 (416)
160 KOG1245 Chromatin remodeling c 31.3 46 0.001 41.1 3.8 49 265-313 1108-1159(1404)
161 PF01363 FYVE: FYVE zinc finge 30.7 22 0.00048 27.4 0.7 31 265-295 9-43 (69)
162 KOG1812 Predicted E3 ubiquitin 29.9 23 0.0005 37.5 0.9 42 264-309 305-351 (384)
163 KOG2231 Predicted E3 ubiquitin 27.0 45 0.00098 37.7 2.5 47 267-313 2-51 (669)
164 KOG2071 mRNA cleavage and poly 26.8 30 0.00065 38.2 1.1 31 265-295 513-556 (579)
165 PF02318 FYVE_2: FYVE-type zin 26.6 83 0.0018 27.3 3.7 45 264-311 53-102 (118)
166 PF09726 Macoilin: Transmembra 25.9 5.7E+02 0.012 29.5 11.1 22 84-105 25-46 (697)
167 KOG2041 WD40 repeat protein [G 25.6 36 0.00078 38.5 1.4 44 263-314 1129-1185(1189)
168 KOG3726 Uncharacterized conser 25.1 1.4E+02 0.003 33.8 5.8 38 266-310 655-696 (717)
169 PRK12495 hypothetical protein; 24.0 6.8E+02 0.015 24.4 13.1 13 303-315 58-70 (226)
170 PF04905 NCD2: NAB conserved r 22.8 1.2E+02 0.0026 28.0 4.0 45 473-517 38-82 (164)
171 KOG2113 Predicted RNA binding 22.5 45 0.00098 33.9 1.4 44 265-314 343-387 (394)
172 COG3492 Uncharacterized protei 22.0 42 0.00091 27.8 0.9 12 287-298 43-54 (104)
173 cd00350 rubredoxin_like Rubred 21.9 50 0.0011 21.8 1.1 10 303-312 17-26 (33)
174 COG3813 Uncharacterized protei 21.4 50 0.0011 26.2 1.1 43 267-315 7-53 (84)
175 PF10235 Cript: Microtubule-as 20.6 55 0.0012 27.2 1.3 38 265-315 44-81 (90)
176 KOG4451 Uncharacterized conser 20.5 73 0.0016 31.0 2.2 17 303-319 263-279 (286)
No 1
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-38 Score=309.06 Aligned_cols=279 Identities=24% Similarity=0.399 Sum_probs=201.2
Q ss_pred CccchhhhhhHhhcccCcHHHHHHHHHHHHHHHHHHhhhcccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 010130 1 MVLVSDFPLQTIFFGELYPAETRKFVERLINYVIYKGTFLPLVIPPTVFQAGLWSVWLTVLCSLKMFQALARDRLERLNA 80 (517)
Q Consensus 1 ~~~~~~~~lq~lfFG~Lr~~E~e~l~er~~~~~~~k~~fl~~vi~~~~~~~~~w~~wf~~L~~lK~fh~l~~dR~e~l~~ 80 (517)
||.+++.++++++||+||..|.|+++|++| |++ +++.++..++++.... .+...+..|+|+|+||||+++|.|...-
T Consensus 53 ~~~l~~~~l~~llFGsLr~~E~e~~~E~l~-~tl-t~~ll~iS~F~e~i~f-s~~~l~~~Ll~~kvfhwil~~R~er~~~ 129 (491)
T COG5243 53 LFFLIANALKTLLFGSLRTFELELLYEQLW-ITL-TEILLAISVFREAISF-SFFMLLSTLLFAKVFHWILSFRTERLQI 129 (491)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhhH-HHH-HHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788999999999999999999999998 444 3555555556653221 2356788889999999999999997642
Q ss_pred CCCCCcchH--HHHHHHHHHHHHHHHHHHHHHHHHHhhCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 010130 81 SPSATPWTY--FRVFSALLFVLAVDIFWIRMCLLLFKTLDSSMFLLLFFEPLSVAFETMQAILVHGFQLLDIWLHHSAGN 158 (517)
Q Consensus 81 sp~~~~~~h--~R~~~lL~~ll~~d~~~i~~~~~~~~~~g~s~~ll~~fE~~~l~~~~l~~~l~~~~~l~d~~~~~~~~~ 158 (517)
.++..++| -|+.+++.++.++|..+|..|+..-...+.++..++.+|+..+. ..+++ ..+
T Consensus 130 -~st~~~~~ifSrfS~~~~lL~ild~~li~~CiSs~~liD~~~lfL~~c~F~~~l-l~l~s----------------~~n 191 (491)
T COG5243 130 -QSTDQRFHIFSRFSCAYFLLSILDASLIYLCISSEHLIDKSTLFLFVCEFSVLL-LNLTS----------------EAN 191 (491)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHhhhhhhHHHHHHHHHHHHH-HHHHH----------------hhc
Confidence 23444444 69999999999999999999996433333333223334432211 11111 111
Q ss_pred CcccccchhhhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010130 159 STNCARSKFFDTLAAGSLLEWKGILIRNFGFFLDMATLLMALGHYIHIWWLRGMAFHLVDAILFLNIRALLSAIIKRIKG 238 (517)
Q Consensus 159 ~~~~~~~~~~~~~~~g~~we~kg~~i~~~~f~~dl~~~~~~l~~~~~~~~~~g~~~~l~~~vl~~~l~~~~~~~~~~~~~ 238 (517)
..+... ++.+. .-+.|..+.++.++..|=++++.+-..+...+..+.+|+.+++.++ -. +..+.++++.
T Consensus 192 -~~cV~n--~~~~d---dDd~rs~~~f~~~v~y~g~tllays~l~~~~~~~~r~Pi~l~r~~~-t~----~~AL~~~i~~ 260 (491)
T COG5243 192 -KLCVYN--YEARD---DDDERSTYLFRLEVCYDGLTLLAYSLLFMYQFPYVRVPIYLIRQMY-TC----FYALFRRIRE 260 (491)
T ss_pred -ccceee--ccccc---ccccceeeeeeeehHHHHHHHHHHHHHHHhhccchhchHHHHHHHH-HH----HHHHHHHHHH
Confidence 111100 00000 0134555556677777878888777777777777888988887643 23 3456788999
Q ss_pred HHHHHHHHHHHHhhCCCCChhhhhcCCCCCccccccc-c------------ccccccccCccchhhHHHHHHhCCCCCCC
Q 010130 239 FIKLRIALGHLHAALPDATSEELRAYDDECAICREPM-A------------KAKKLLCNHLFHLACLRSWLDQGLNEMYS 305 (517)
Q Consensus 239 ~~~~r~~~~~~~~~l~~~~~~~l~~~~~~C~IC~~~~-~------------~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~ 305 (517)
+.+++++.|++++.+|.++.|++.+.|..|.||+|++ . .|++|||||.+|.+|++.|+++ +++
T Consensus 261 ~~~~~r~~kdl~~~~~t~t~eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER----qQT 336 (491)
T COG5243 261 HARFRRATKDLNAMYPTATEEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER----QQT 336 (491)
T ss_pred HHHHHHHhhHHHhhcchhhhhhhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh----ccC
Confidence 9999999999999999999999999999999999994 3 3589999999999999999999 799
Q ss_pred CCccccCCcC
Q 010130 306 CPTCRKPLFV 315 (517)
Q Consensus 306 CP~CR~~~~~ 315 (517)
||+||.++.-
T Consensus 337 CPICr~p~if 346 (491)
T COG5243 337 CPICRRPVIF 346 (491)
T ss_pred CCcccCcccc
Confidence 9999999643
No 2
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-34 Score=312.18 Aligned_cols=471 Identities=26% Similarity=0.245 Sum_probs=325.3
Q ss_pred chhhhhhHhhcccCcHHHHHHHHHHHHHHHHHHhhhccc-ccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 010130 4 VSDFPLQTIFFGELYPAETRKFVERLINYVIYKGTFLPL-VIPPTVFQAGLWSVWLTVLCSLKMFQALARDRLERLNASP 82 (517)
Q Consensus 4 ~~~~~lq~lfFG~Lr~~E~e~l~er~~~~~~~k~~fl~~-vi~~~~~~~~~w~~wf~~L~~lK~fh~l~~dR~e~l~~sp 82 (517)
.+...++.+|||.|+..|.||+.|++|+|.+++.+|... +.+++.+. ..|..|+.+++++|+||||+++|+++|+.+|
T Consensus 51 ~~~~sl~~~~~g~l~~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~~~l~~~~~~~l~~~~ 129 (543)
T KOG0802|consen 51 LILLSLQLIFFGALLLSEAEHLSHSLWNLIGLKYTFLLGYVTFRTVLS-ELFSLWLLLLLFLHVFHLLASDRLPRLFFSP 129 (543)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhh-HHHHHHHHHHHHHHHHHHHHHhHHHHHHhCc
Confidence 455678999999999999999999999999999999884 44566677 6899999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 010130 83 SATPWTYFRVFSALLFVLAVDIFWIRMCLLLFK-TLDSSMFLLLFFEPLSVAFETMQAILVHGFQLLDIWLHHSAGNSTN 161 (517)
Q Consensus 83 ~~~~~~h~R~~~lL~~ll~~d~~~i~~~~~~~~-~~g~s~~ll~~fE~~~l~~~~l~~~l~~~~~l~d~~~~~~~~~~~~ 161 (517)
..+.+.|+|+.+.+..+...|...+..++.... ..+.++.+.+.++.+.+.+.+....+.|.++..+ +
T Consensus 130 ~~~~~~~~~v~~~~~~l~~~~~~~~~~s~~~~~~t~~~~~l~~~~~~~~~~~~~~~~~~~~y~l~~~~-----------~ 198 (543)
T KOG0802|consen 130 LITTLNHFRVVSVLFALLIVDGHLVYNSLKTAYRTYGLSMLIELTFPSLLVVFWTALVILQYVLHSTA-----------D 198 (543)
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheeccchHHHHHHHHHHHHHHHHHHhcch-----------h
Confidence 999999999999999999999998877776544 7788877778899888877777666665443211 0
Q ss_pred cccchhhhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010130 162 CARSKFFDTLAAGSLLEWKGILIRNFGFFLDMATLLMALGHYIHIWWLRGMAFHLVDAILFLNIRALLSAIIKRIKGFIK 241 (517)
Q Consensus 162 ~~~~~~~~~~~~g~~we~kg~~i~~~~f~~dl~~~~~~l~~~~~~~~~~g~~~~l~~~vl~~~l~~~~~~~~~~~~~~~~ 241 (517)
.. -..|+++..+..+.+...+.......+.++.+.+..+++++++.+.+.... +....++.+...+
T Consensus 199 ~~----------~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 264 (543)
T KOG0802|consen 199 HI----------HIRSEDLSLLTFTLIIFGCMTLLVLLIMSAVISLVVHGILLGLVADLYNTP----FLEVERRLRELAP 264 (543)
T ss_pred hc----------CcccCccceeechhHHHhhhhHHHHHhhhHHHHHHHhHhhhhhhHHHhhhh----hhhHHHHccchHH
Confidence 00 113467777777878888888888888888888888888888887644332 3455667777778
Q ss_pred HHHHHHH-HHhhCCCCChhh--hhcCCCCCccccccccc-----cccccccCccchhhHHHHHHhCCCCCCCCCccccCC
Q 010130 242 LRIALGH-LHAALPDATSEE--LRAYDDECAICREPMAK-----AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 313 (517)
Q Consensus 242 ~r~~~~~-~~~~l~~~~~~~--l~~~~~~C~IC~~~~~~-----~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~ 313 (517)
.++.... +...++.++.++ +.+.++.|+||+|.+.. ++++||||.||..|+++|+++ +++||+||..+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er----~qtCP~CR~~~ 340 (543)
T KOG0802|consen 265 LRRVILATLQTGLPGATLEERGLALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER----QQTCPTCRTVL 340 (543)
T ss_pred HHHHhhccccccccccChHHhhhhhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH----hCcCCcchhhh
Confidence 8877777 777888888887 66789999999999988 799999999999999999999 69999999966
Q ss_pred cCCCCcccCCCCCCCCCChHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCcCcCCCCCCCCCCC
Q 010130 314 FVGRREIEANSRPGEVSSDEQLARQLSMGLDRQNNTGQTLPTGVFPNQTQPPVEGSPWRNAGLDSSWLHAWPSQGVDGAG 393 (517)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~g~~~swl~~~~~~~~~~~~ 393 (517)
......................+.+ ........+..+...++.....+.++...+....++++...+...+....+
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~ 416 (543)
T KOG0802|consen 341 YDYVLWQIAALQTWLLVVTTKSALE----VLKVPVSLATYTLFMVETRREEPWENLDDLIYYVRSTGNSIEFLFGKVVFG 416 (543)
T ss_pred hccccccccCCccccccccceeccc----ccccccccccCcccccccccccccCCCcchhhhcCccchhhHhhhhhhccc
Confidence 5443222222221111111111111 011111223333334455555555555555555666777777666666666
Q ss_pred CCCccCCCcc-hhHHHHHHhhhccCcccccccccccccc-cCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCC
Q 010130 394 PSTAMRSVGL-SRVQMMMRHLASVGETYAQTAIEDTSWS-LWPMNPSQASASGSPVPPAVPGRHPG-NTGGAHARSTSRS 470 (517)
Q Consensus 394 ~s~a~~~~g~-~r~~~~~r~~~s~~~~~~~~~~~~~~~~-~w~~~~~~~~~~~s~~~~~~~~~~~~-~~~~~~~r~~~~~ 470 (517)
++......+. +..+.+++..-+..+-+.. +++..++ .|++.+.....+.+-..|..-.++.+ +..+.+.+ ..++
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~-~~~~ 493 (543)
T KOG0802|consen 417 NGASPVIFESGSQIRAAMMCIHSYFNIYLR--AEPGWSSFLNRRSAVKKINSLSEATPSQLREPNDVCAICYQEM-SARI 493 (543)
T ss_pred ccchhheecCCccccccceeeeeecccccc--cccccCcccCccccccccCCCCCCChhhhhcccCcchHHHHHH-Hhcc
Confidence 6555554443 3566667776667666665 2333333 44554454444444444333333322 22222222 2222
Q ss_pred cchhhHHHHHHHHHHHhhCCCCChHHHHHHhhccCchhHHH
Q 010130 471 ANENIANILAMAETVREVLPHMPEDLIFQDLQRTNSATITV 511 (517)
Q Consensus 471 ~~~~~~~l~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~t~ 511 (517)
+...-.-...+...++++-|.-+..+..+|-..+++...|.
T Consensus 494 ~~~~~~~~l~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~ 534 (543)
T KOG0802|consen 494 TPCSHALCLRKWLYVQEVCPLCHTYMKEDDFLSKNSSESTA 534 (543)
T ss_pred ccccchhHHHhhhhhccccCCCchhhhcccccCccccccch
Confidence 22213555678889999999999999998888777776653
No 3
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=3.1e-12 Score=129.50 Aligned_cols=74 Identities=32% Similarity=0.647 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhhCCCCChhhhhcCC--CCCcccccccccc---ccccccCccchhhHHHHHHhCCCCCCCCCccccCCc
Q 010130 240 IKLRIALGHLHAALPDATSEELRAYD--DECAICREPMAKA---KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 314 (517)
Q Consensus 240 ~~~r~~~~~~~~~l~~~~~~~l~~~~--~~C~IC~~~~~~~---~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 314 (517)
.+.++..+++.+++|..+.....+.+ +.|+||+|+|.++ +.|||+|.||..||++||.+. ...||+||+++.
T Consensus 202 ~~~~r~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~di~ 278 (348)
T KOG4628|consen 202 LRRNRLIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT---RTFCPVCKRDIR 278 (348)
T ss_pred hhhhhhHHHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEecCCCchhhccchhhHhhc---CccCCCCCCcCC
Confidence 45556677777788877765543221 4899999999877 457999999999999999884 467999999875
Q ss_pred CC
Q 010130 315 VG 316 (517)
Q Consensus 315 ~~ 316 (517)
..
T Consensus 279 ~~ 280 (348)
T KOG4628|consen 279 TD 280 (348)
T ss_pred CC
Confidence 54
No 4
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.19 E-value=5.4e-12 Score=90.88 Aligned_cols=41 Identities=49% Similarity=1.176 Sum_probs=35.0
Q ss_pred CCCccccccccc---cccccccCccchhhHHHHHHhCCCCCCCCCccc
Q 010130 266 DECAICREPMAK---AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCR 310 (517)
Q Consensus 266 ~~C~IC~~~~~~---~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR 310 (517)
++|+||++.+.. .+.++|||.||.+|+.+|+++ +.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~----~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR----NNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH----SSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh----CCcCCccC
Confidence 479999999964 467899999999999999999 57999997
No 5
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=4.9e-11 Score=116.24 Aligned_cols=51 Identities=24% Similarity=0.710 Sum_probs=45.6
Q ss_pred cCCCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcCCC
Q 010130 263 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 317 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~~ 317 (517)
+.+..|.+|+|...+|..+||||+||+.||.+|... ...||.||..+.+.+
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e----k~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE----KAECPLCREKFQPSK 287 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc----ccCCCcccccCCCcc
Confidence 446789999999999999999999999999999998 578999999876543
No 6
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.06 E-value=1.3e-10 Score=112.85 Aligned_cols=47 Identities=38% Similarity=0.924 Sum_probs=40.2
Q ss_pred CCCCCcccccccccc--------ccccccCccchhhHHHHHHhCCCCCCCCCccccCCc
Q 010130 264 YDDECAICREPMAKA--------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 314 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~--------~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 314 (517)
.+.+|+||++.+.++ +..+|||.||..||.+|+++ +.+||+||.++.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~----~~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE----KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc----CCCCCCCCCEee
Confidence 467899999987653 34589999999999999987 689999999875
No 7
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=6.7e-11 Score=112.19 Aligned_cols=54 Identities=30% Similarity=0.654 Sum_probs=47.1
Q ss_pred cCCCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcCCC
Q 010130 263 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 317 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~~ 317 (517)
....+|.||+|.-++|+.+.|||.||+.||.+|++.... .+.||+||..+..+.
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~-~~~cPVCK~~Vs~~~ 98 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPN-SKECPVCKAEVSIDT 98 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCC-CeeCCccccccccce
Confidence 345689999999999999999999999999999987544 588999999986654
No 8
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.01 E-value=1.3e-10 Score=82.59 Aligned_cols=42 Identities=31% Similarity=0.759 Sum_probs=33.0
Q ss_pred CccccccccccccccccCccchhhHHHHHHhCCCCCCCCCcc
Q 010130 268 CAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTC 309 (517)
Q Consensus 268 C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~C 309 (517)
|+||++.|.+|+.|+|||+||..||.+|++........||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999998754333689988
No 9
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.00 E-value=2.3e-10 Score=106.75 Aligned_cols=54 Identities=28% Similarity=0.655 Sum_probs=45.1
Q ss_pred CCCCCccccccccccccccccCccchhhHHHHHHhC------------CCCCCCCCccccCCcCCC
Q 010130 264 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQG------------LNEMYSCPTCRKPLFVGR 317 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~------------~~~~~~CP~CR~~~~~~~ 317 (517)
.+.+|+||++.+.+++.++|||.||+.||..|+... ......||+||.++....
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~ 82 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEAT 82 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhc
Confidence 467899999999999999999999999999998642 112468999999996644
No 10
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.99 E-value=1.9e-10 Score=92.14 Aligned_cols=43 Identities=49% Similarity=1.143 Sum_probs=34.9
Q ss_pred CCCCCcccccccccc-------------ccccccCccchhhHHHHHHhCCCCCCCCCccc
Q 010130 264 YDDECAICREPMAKA-------------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCR 310 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~-------------~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR 310 (517)
.++.|+||++.+.++ ...+|||.||..||.+|++. +.+||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~----~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ----NNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT----SSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc----CCcCCCCC
Confidence 355699999999432 23489999999999999998 57999998
No 11
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.84 E-value=1.5e-09 Score=80.40 Aligned_cols=46 Identities=39% Similarity=0.820 Sum_probs=40.5
Q ss_pred CCCCccccccccccccccccCc-cchhhHHHHHHhCCCCCCCCCccccCCc
Q 010130 265 DDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLF 314 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~C~H~-Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 314 (517)
+..|.||++...+...+||||. ||..|..+|+++ ...||+||+++.
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~----~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKR----KKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT----TSBBTTTTBB-S
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhccc----CCCCCcCChhhc
Confidence 4689999999999999999999 999999999996 699999999874
No 12
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.4e-09 Score=106.19 Aligned_cols=49 Identities=37% Similarity=0.798 Sum_probs=41.6
Q ss_pred CCCCCcccccccccc---ccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 264 YDDECAICREPMAKA---KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~---~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
.+-+|+||++.+.+. +.+||.|.||..|+.+|+..- +..||+||.++++
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y---~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGY---SNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhh---cccCCccCCCCCC
Confidence 357899999999654 457999999999999999843 5899999999864
No 13
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.77 E-value=2.8e-09 Score=74.63 Aligned_cols=38 Identities=29% Similarity=0.835 Sum_probs=33.5
Q ss_pred Ccccccccccc-ccccccCccchhhHHHHHHhCCCCCCCCCcc
Q 010130 268 CAICREPMAKA-KKLLCNHLFHLACLRSWLDQGLNEMYSCPTC 309 (517)
Q Consensus 268 C~IC~~~~~~~-~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~C 309 (517)
|+||++.+.++ +.++|||.||.+|+.+|++. +..||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~----~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK----NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC----TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC----cCCCcCC
Confidence 89999999999 67899999999999999998 5899998
No 14
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.76 E-value=3.6e-09 Score=85.66 Aligned_cols=51 Identities=37% Similarity=0.826 Sum_probs=40.0
Q ss_pred CCCCCccccccccc------------c-ccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 264 YDDECAICREPMAK------------A-KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 264 ~~~~C~IC~~~~~~------------~-~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
.|+.|.||+..|+. | +.-.|+|.||..||.+|++++.. +..||+||+++..
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~-~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSS-KGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccC-CCCCCCcCCeeee
Confidence 37789999988862 1 22379999999999999997532 5899999998643
No 15
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.71 E-value=9.4e-09 Score=73.21 Aligned_cols=44 Identities=41% Similarity=1.057 Sum_probs=37.2
Q ss_pred CCccccccccccccc-cccCccchhhHHHHHHhCCCCCCCCCccccCC
Q 010130 267 ECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 313 (517)
Q Consensus 267 ~C~IC~~~~~~~~~l-~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~ 313 (517)
+|+||++.+.++..+ +|||.||..|+..|++++ ...||.||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~---~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSG---KNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhC---cCCCCCCCCcC
Confidence 599999999666655 499999999999999873 57899999763
No 16
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.70 E-value=1.2e-08 Score=79.07 Aligned_cols=46 Identities=22% Similarity=0.292 Sum_probs=42.1
Q ss_pred CCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 266 DECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 266 ~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
..|+||.+.+.+|+.++|||+|+..|+.+|++. +.+||.|+.++..
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~----~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLS----HGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH----CCCCCCCcCCCCh
Confidence 469999999999999999999999999999988 5799999988744
No 17
>PHA02926 zinc finger-like protein; Provisional
Probab=98.63 E-value=2e-08 Score=94.82 Aligned_cols=53 Identities=28% Similarity=0.663 Sum_probs=40.1
Q ss_pred cCCCCCccccccccc---------cccccccCccchhhHHHHHHhCC--CCCCCCCccccCCcC
Q 010130 263 AYDDECAICREPMAK---------AKKLLCNHLFHLACLRSWLDQGL--NEMYSCPTCRKPLFV 315 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~---------~~~l~C~H~Fh~~Cl~~wl~~~~--~~~~~CP~CR~~~~~ 315 (517)
..+.+|+||+|...+ +...+|+|.||..||+.|.+... ....+||+||..+..
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 346889999998632 23458999999999999998531 124679999998643
No 18
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.61 E-value=2e-08 Score=70.97 Aligned_cols=40 Identities=43% Similarity=1.032 Sum_probs=35.8
Q ss_pred Cccccccccccc-cccccCccchhhHHHHHHhCCCCCCCCCcc
Q 010130 268 CAICREPMAKAK-KLLCNHLFHLACLRSWLDQGLNEMYSCPTC 309 (517)
Q Consensus 268 C~IC~~~~~~~~-~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~C 309 (517)
|+||++.+.++. .++|||.||..|+.+|+++. ....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~--~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENS--GSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHT--SSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhc--CCccCCcC
Confidence 899999999998 88999999999999999952 26889998
No 19
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.1e-06 Score=84.96 Aligned_cols=51 Identities=35% Similarity=0.821 Sum_probs=41.5
Q ss_pred CCCCCcccccccccc----------ccccccCccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 264 YDDECAICREPMAKA----------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~----------~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
+|..|+||-..+... -+|.|+|+||..||+.|..-+. .++||.|+..+..+
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGK--kqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGK--KQTCPYCKEKVDLK 283 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecC--CCCCchHHHHhhHh
Confidence 467899999877532 4689999999999999987653 58999999987554
No 20
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=2.5e-08 Score=90.94 Aligned_cols=48 Identities=29% Similarity=0.717 Sum_probs=41.1
Q ss_pred CCCCcccccccccc--ccccccCccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 265 DDECAICREPMAKA--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 265 ~~~C~IC~~~~~~~--~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
-..|+|||+.+.+. +.+.|||+||..||+.-++. ...||+||+.|..+
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~----~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN----TNKCPTCRKKITHK 180 (187)
T ss_pred ccCCCceecchhhccccccccchhHHHHHHHHHHHh----CCCCCCcccccchh
Confidence 35799999999764 45799999999999999998 68999999987654
No 21
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.56 E-value=5.6e-09 Score=107.11 Aligned_cols=108 Identities=31% Similarity=0.553 Sum_probs=78.2
Q ss_pred CCCccccccccccc----cccccCccchhhHHHHHHhCCCCCCCCCccccCCcCCCCcccCCCCCCCCCChHHHHHHhhc
Q 010130 266 DECAICREPMAKAK----KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRREIEANSRPGEVSSDEQLARQLSM 341 (517)
Q Consensus 266 ~~C~IC~~~~~~~~----~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 341 (517)
.+|+||+|.|...+ ...|.|.||..|+..|... +||+||.-.. |.......+..++..++++..+..
T Consensus 176 PTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~------scpvcR~~q~---p~~ve~~~c~~c~~~~~LwicliC 246 (493)
T KOG0804|consen 176 PTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS------SCPVCRYCQS---PSVVESSLCLACGCTEDLWICLIC 246 (493)
T ss_pred CCcchhHhhcCccccceeeeecccccchHHHhhcccC------cChhhhhhcC---cchhhhhhhhhhcccccEEEEEEc
Confidence 58999999998653 4589999999999999975 8999998543 333345556666666666666665
Q ss_pred CCCCCC------------CCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCcCcCCCCCCCCCC
Q 010130 342 GLDRQN------------NTGQTLPTGVFPNQTQPPVEGSPWRNAGLDSSWLHAWPSQGVDGA 392 (517)
Q Consensus 342 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~~s~~r~~g~~~swl~~~~~~~~~~~ 392 (517)
|.-+.. ..+|...+.+-. .++|++|| ..|+|.......||.
T Consensus 247 g~vgcgrY~eghA~rHweet~H~yalel~t--------qrVWDYAG--DnYVhRl~~~~~dGk 299 (493)
T KOG0804|consen 247 GNVGCGRYKEGHARRHWEETGHCYALELET--------QRVWDYAG--DNYVHRLPQSKTDGK 299 (493)
T ss_pred cceecccccchhHHHHHHhhcceEEEeecc--------eeeeeccc--chhhhhccccCCCCc
Confidence 554433 122333333322 67899999 899999999988887
No 22
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=6.3e-07 Score=92.93 Aligned_cols=50 Identities=36% Similarity=0.850 Sum_probs=39.6
Q ss_pred cCCCCCccccccccc------c-----------ccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 263 AYDDECAICREPMAK------A-----------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~------~-----------~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
+...+|+||+.+.+- + ..+||.|+||..|+.+|.+.- +..||+||++++.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~y---kl~CPvCR~pLPp 635 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTY---KLICPVCRCPLPP 635 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhh---cccCCccCCCCCC
Confidence 345689999988741 1 235999999999999999953 4699999998863
No 23
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.51 E-value=6.7e-08 Score=66.33 Aligned_cols=39 Identities=41% Similarity=1.054 Sum_probs=34.9
Q ss_pred CccccccccccccccccCccchhhHHHHHHhCCCCCCCCCcc
Q 010130 268 CAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTC 309 (517)
Q Consensus 268 C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~C 309 (517)
|+||++....+..++|||.||..|+..|++.. ...||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~---~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSG---NNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhC---cCCCCCC
Confidence 89999998888899999999999999999842 5789988
No 24
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=4.8e-08 Score=94.39 Aligned_cols=50 Identities=32% Similarity=0.697 Sum_probs=43.2
Q ss_pred CCCCCccccccccccccccccCccchhhHHH-HHHhCCCCCCCCCccccCCcCC
Q 010130 264 YDDECAICREPMAKAKKLLCNHLFHLACLRS-WLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~-wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
.|..|+||++....+..++|||+||+.||.. |-.++ ..-||.||+.+..+
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k---~~~CplCRak~~pk 264 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKK---YEFCPLCRAKVYPK 264 (271)
T ss_pred cccceeeeecccCCcccccccchhhHHHHHHHHHhhc---cccCchhhhhccch
Confidence 3678999999999999999999999999998 88773 34599999987654
No 25
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.49 E-value=7e-08 Score=100.52 Aligned_cols=48 Identities=27% Similarity=0.546 Sum_probs=43.4
Q ss_pred CCCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 264 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
....|+||.+.+.+|+.++|||.||..|+..|+.. ...||+||..+..
T Consensus 25 ~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~----~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 25 TSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN----QPKCPLCRAEDQE 72 (397)
T ss_pred cccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC----CCCCCCCCCcccc
Confidence 46789999999999999999999999999999987 4689999998754
No 26
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.48 E-value=5.7e-08 Score=69.17 Aligned_cols=39 Identities=31% Similarity=0.810 Sum_probs=23.7
Q ss_pred Cccccccccc----cccccccCccchhhHHHHHHhCCCCCCCCC
Q 010130 268 CAICREPMAK----AKKLLCNHLFHLACLRSWLDQGLNEMYSCP 307 (517)
Q Consensus 268 C~IC~~~~~~----~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP 307 (517)
|+||.| +.+ |+.|+|||+||.+|+.++...+......||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 877 899999999999999999987432246776
No 27
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.2e-07 Score=99.39 Aligned_cols=55 Identities=27% Similarity=0.640 Sum_probs=46.3
Q ss_pred CCCCccccccccccccccccCccchhhHHHHHHhC-CCCCCCCCccccCCcCCCCc
Q 010130 265 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQG-LNEMYSCPTCRKPLFVGRRE 319 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~-~~~~~~CP~CR~~~~~~~~~ 319 (517)
+..|+||++....|+.+.|||+||..||.+.+... ......||+||..+..++..
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~ 241 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLL 241 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhcccccee
Confidence 67899999999999999999999999999888764 22247999999999876543
No 28
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.30 E-value=3.1e-07 Score=65.98 Aligned_cols=41 Identities=34% Similarity=0.844 Sum_probs=34.3
Q ss_pred CCcccccccc---ccccccccCccchhhHHHHHHhCCCCCCCCCcccc
Q 010130 267 ECAICREPMA---KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRK 311 (517)
Q Consensus 267 ~C~IC~~~~~---~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 311 (517)
.|+||++.+. .+..++|||+||..|+...... ...||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~----~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGK----SVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCC----CCCCcCCCC
Confidence 4999999992 3567899999999999998833 589999985
No 29
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.26 E-value=2.1e-07 Score=92.36 Aligned_cols=48 Identities=29% Similarity=0.566 Sum_probs=44.0
Q ss_pred CCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcCCC
Q 010130 266 DECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 317 (517)
Q Consensus 266 ~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~~ 317 (517)
..|-||.|.|..|+.+||+|.||.-||+..|.. +..||.|+.++.+..
T Consensus 24 LRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~----~p~CP~C~~~~~Es~ 71 (442)
T KOG0287|consen 24 LRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY----KPQCPTCCVTVTESD 71 (442)
T ss_pred HHHhHHHHHhcCceeccccchHHHHHHHHHhcc----CCCCCceecccchhh
Confidence 479999999999999999999999999999998 689999999886653
No 30
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.24 E-value=4.5e-07 Score=72.60 Aligned_cols=49 Identities=27% Similarity=0.407 Sum_probs=39.4
Q ss_pred CCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 265 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
+..|+||.+.|.+|+.+||||.|.+.||..|+.++ +.+||.|+.++...
T Consensus 4 ~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~---~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 4 EFLCPITGELMRDPVILPSGHTYERSAIERWLEQN---GGTDPFTRQPLSES 52 (73)
T ss_dssp GGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTT---SSB-TTT-SB-SGG
T ss_pred ccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcC---CCCCCCCCCcCCcc
Confidence 34799999999999999999999999999999984 58999999887653
No 31
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=8.5e-07 Score=88.95 Aligned_cols=51 Identities=35% Similarity=0.664 Sum_probs=43.1
Q ss_pred CCCCCccccccccccccc-cccCccchhhHHHHHHhCCCCCCCCCccccCCcCCC
Q 010130 264 YDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 317 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~l-~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~~ 317 (517)
.+..|+||++.+...... .|+|.||.+||..-+..+ +..||.||+.+..+.
T Consensus 42 ~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~g---n~ecptcRk~l~Skr 93 (381)
T KOG0311|consen 42 IQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSG---NNECPTCRKKLVSKR 93 (381)
T ss_pred hhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhc---CCCCchHHhhccccc
Confidence 456899999999877666 599999999998888876 789999999885543
No 32
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.09 E-value=1.2e-06 Score=85.38 Aligned_cols=48 Identities=27% Similarity=0.546 Sum_probs=43.3
Q ss_pred CCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 265 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
-..|-||-+.+..|..++|||.||.-||+..|.. +..||.||.+..+.
T Consensus 25 ~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~----qp~CP~Cr~~~~es 72 (391)
T COG5432 25 MLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT----QPFCPVCREDPCES 72 (391)
T ss_pred HHHhhhhhheeecceecccccchhHHHHHHHhcC----CCCCccccccHHhh
Confidence 3579999999999999999999999999999988 68999999986543
No 33
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.06 E-value=2.6e-06 Score=67.31 Aligned_cols=31 Identities=39% Similarity=0.876 Sum_probs=28.1
Q ss_pred cccCccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 282 LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 282 ~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
-|.|.||..||..||+. +..||+||+++...
T Consensus 53 ~CnHaFH~HCI~rWL~T----k~~CPld~q~w~~~ 83 (88)
T COG5194 53 VCNHAFHDHCIYRWLDT----KGVCPLDRQTWVLA 83 (88)
T ss_pred ecchHHHHHHHHHHHhh----CCCCCCCCceeEEe
Confidence 69999999999999999 68999999987654
No 34
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=98.05 E-value=4.7e-06 Score=59.21 Aligned_cols=39 Identities=21% Similarity=0.429 Sum_probs=35.0
Q ss_pred HHHHHHHHhhCCCCChHHHHHHh-hccCchhHHHHhhhcC
Q 010130 479 LAMAETVREVLPHMPEDLIFQDL-QRTNSATITVNNLLQM 517 (517)
Q Consensus 479 ~~~~~~v~~~~~~~~~~~i~~~~-~~~~~~~~t~~~~~~~ 517 (517)
+.++++++++||+++.++|.++| ...++|+.|+++||++
T Consensus 2 ~~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~~ 41 (42)
T PF02845_consen 2 EEMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLEM 41 (42)
T ss_dssp HHHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 47899999999999999999999 7777999999999975
No 35
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=98.04 E-value=6.7e-06 Score=58.73 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhCCCCChHHHHHHhh-ccCchhHHHHhhhcC
Q 010130 478 ILAMAETVREVLPHMPEDLIFQDLQ-RTNSATITVNNLLQM 517 (517)
Q Consensus 478 l~~~~~~v~~~~~~~~~~~i~~~~~-~~~~~~~t~~~~~~~ 517 (517)
.+.++++++++||+++...|.++|. .+++|+.|++++|++
T Consensus 2 ~~~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~~ 42 (43)
T smart00546 2 NDEALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLEG 42 (43)
T ss_pred hHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 4678999999999999999999999 999999999999986
No 36
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.93 E-value=5.1e-06 Score=91.88 Aligned_cols=50 Identities=30% Similarity=0.745 Sum_probs=39.7
Q ss_pred cCCCCCccccccccc-----c--ccccccCccchhhHHHHHHhCCCCCCCCCccccCCc
Q 010130 263 AYDDECAICREPMAK-----A--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 314 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~-----~--~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 314 (517)
+.-++|+||+..+.. | +.-.|.|-||..|+.+|++... +.+||.||..++
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~--~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSA--RSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcC--CCCCCccccccc
Confidence 455789999988762 2 2235999999999999999864 589999998764
No 37
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=3.6e-06 Score=65.94 Aligned_cols=50 Identities=34% Similarity=0.807 Sum_probs=38.7
Q ss_pred CCCCCccccccccc------------cccc-cccCccchhhHHHHHHhCCCCCCCCCccccCCc
Q 010130 264 YDDECAICREPMAK------------AKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 314 (517)
Q Consensus 264 ~~~~C~IC~~~~~~------------~~~l-~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 314 (517)
.++.|.||+-.|.. |..+ -|.|.||..||.+|+..+.. +..||+||+.+.
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~ts-q~~CPmcRq~~~ 81 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTS-QGQCPMCRQTWQ 81 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccc-cccCCcchheeE
Confidence 35589999888863 1112 69999999999999987544 589999999764
No 38
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=3.9e-06 Score=84.18 Aligned_cols=44 Identities=36% Similarity=0.685 Sum_probs=39.6
Q ss_pred cCCCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccc
Q 010130 263 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCR 310 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR 310 (517)
.....|+||++.+.+|+.+||||.||..|+..++.. ...||.||
T Consensus 11 ~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~----~~~Cp~cr 54 (386)
T KOG2177|consen 11 QEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEG----PLSCPVCR 54 (386)
T ss_pred cccccChhhHHHhhcCccccccchHhHHHHHHhcCC----CcCCcccC
Confidence 346689999999999989999999999999998882 58999999
No 39
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.84 E-value=1.2e-05 Score=80.76 Aligned_cols=50 Identities=28% Similarity=0.694 Sum_probs=37.3
Q ss_pred CCCCcccccc-ccccc-c-c--cccCccchhhHHHHHHhCCCCCCCCCccccCCcCCC
Q 010130 265 DDECAICREP-MAKAK-K-L--LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 317 (517)
Q Consensus 265 ~~~C~IC~~~-~~~~~-~-l--~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~~ 317 (517)
+..|++|... +..+. + + +|||.||.+|+...+..+ ...||.|+.++...+
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~---~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG---SGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCC---CCCCCCCCCccchhh
Confidence 4579999985 22332 1 2 799999999999977554 468999999875543
No 40
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=7.4e-06 Score=80.71 Aligned_cols=48 Identities=27% Similarity=0.602 Sum_probs=41.7
Q ss_pred CCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 265 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
+.+|+||+....-|+.++|+|.||.-||+.-...+ ..+||+||.++..
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~nd---k~~CavCR~pids 54 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKND---KKTCAVCRFPIDS 54 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhhcC---CCCCceecCCCCc
Confidence 56899999999999999999999999998655553 5789999999854
No 41
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.83 E-value=2.1e-05 Score=79.82 Aligned_cols=47 Identities=34% Similarity=0.713 Sum_probs=40.7
Q ss_pred CCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCc
Q 010130 266 DECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 314 (517)
Q Consensus 266 ~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 314 (517)
.-|-||-|.=++.+.-||||..|..|+..|-+.+. .++||.||..+.
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~--gq~CPFCRcEIK 416 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDE--GQTCPFCRCEIK 416 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhcccCC--CCCCCceeeEec
Confidence 35999999988888889999999999999987642 689999999883
No 42
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=1.3e-05 Score=83.86 Aligned_cols=49 Identities=35% Similarity=0.686 Sum_probs=44.1
Q ss_pred cCCCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 263 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
..+..|.||...+..|+.+||||.||..||..-+++ ...||.||.++..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~----~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ----ETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccccHHHHHHHhcc----CCCCccccccccc
Confidence 456789999999999999999999999999987776 6899999998865
No 43
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.81 E-value=5.6e-06 Score=65.67 Aligned_cols=51 Identities=29% Similarity=0.632 Sum_probs=25.3
Q ss_pred CCCCcccccccc-c---ccc----ccccCccchhhHHHHHHhCCCC-------CCCCCccccCCcC
Q 010130 265 DDECAICREPMA-K---AKK----LLCNHLFHLACLRSWLDQGLNE-------MYSCPTCRKPLFV 315 (517)
Q Consensus 265 ~~~C~IC~~~~~-~---~~~----l~C~H~Fh~~Cl~~wl~~~~~~-------~~~CP~CR~~~~~ 315 (517)
+.+|.||++... + +.. -.|++.||..||.+|+...... ..+||.|++++.-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 457999998865 2 222 2699999999999999752111 2369999998754
No 44
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=6.8e-06 Score=60.18 Aligned_cols=47 Identities=32% Similarity=0.629 Sum_probs=38.1
Q ss_pred CCCCccccccccccccccccCc-cchhhHHHHHHhCCCCCCCCCccccCCc
Q 010130 265 DDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLF 314 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~C~H~-Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 314 (517)
+++|.||+|.-.+.+...|||. .|..|-..-++.. +..||+||+++.
T Consensus 7 ~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~---~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKAL---HGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcchHHHHHcchHHhHHHHHHHHHHcc---CCcCcchhhHHH
Confidence 4789999999888888899997 6888866555432 689999999873
No 45
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=8e-06 Score=67.76 Aligned_cols=30 Identities=37% Similarity=0.907 Sum_probs=27.1
Q ss_pred cccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 282 LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 282 ~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
.|+|.||..||..|+++ ...||+|.++...
T Consensus 80 ~CNHaFH~hCisrWlkt----r~vCPLdn~eW~~ 109 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT----RNVCPLDNKEWVF 109 (114)
T ss_pred ecchHHHHHHHHHHHhh----cCcCCCcCcceeE
Confidence 79999999999999999 6999999887654
No 46
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=2.2e-05 Score=74.04 Aligned_cols=87 Identities=28% Similarity=0.572 Sum_probs=64.7
Q ss_pred cCCCCCcccccccccc--ccccccCccchhhHHHHHHh----CCCCCCCCCccccCCcCCCCcccCCCCCCCCCChHHHH
Q 010130 263 AYDDECAICREPMAKA--KKLLCNHLFHLACLRSWLDQ----GLNEMYSCPTCRKPLFVGRREIEANSRPGEVSSDEQLA 336 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~--~~l~C~H~Fh~~Cl~~wl~~----~~~~~~~CP~CR~~~~~~~~~~~~~~~~~~~~~~~~l~ 336 (517)
+++..|..|-..+..+ ++|.|-|.||++|+..|-.+ ..+....||.|-.+|+.. .+...+. +
T Consensus 48 DY~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp--~NlvsPv----------a 115 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPP--INLVSPV----------A 115 (299)
T ss_pred CCCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCC--ccccchh----------H
Confidence 3567899999988754 67899999999999999875 234578999999998763 2223322 4
Q ss_pred HHhhcCCCCCCCCCCCCCCCCCCCC
Q 010130 337 RQLSMGLDRQNNTGQTLPTGVFPNQ 361 (517)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (517)
+.+++.+.+.++.+.++|++..+..
T Consensus 116 ~aLre~L~qvNWaRagLGLpll~E~ 140 (299)
T KOG3970|consen 116 EALREQLKQVNWARAGLGLPLLPEL 140 (299)
T ss_pred HHHHHHHHhhhHHhhccCCccchhh
Confidence 4455555677888888988888754
No 47
>PF13705 TRC8_N: TRC8 N-terminal domain
Probab=97.72 E-value=0.00055 Score=73.06 Aligned_cols=104 Identities=16% Similarity=0.287 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcchhHHHHHHH-HHHHH
Q 010130 56 VWLTVLCSLKMFQALARDRLERLNASPSATPWTYFRVFSALLFVLAVDIFWIRMCLLLFKTLDSSMFLLLFFEP-LSVAF 134 (517)
Q Consensus 56 ~wf~~L~~lK~fh~l~~dR~e~l~~sp~~~~~~h~R~~~lL~~ll~~d~~~i~~~~~~~~~~g~s~~ll~~fE~-~~l~~ 134 (517)
.+..+-..++..|-+.++.+-.|.+|.+.+.++|+|.+++.++++++.+++. +..++....+++++...-+ +...+
T Consensus 348 l~lv~ta~Lh~~~ei~~pvLmsL~As~~~s~~rH~R~L~v~~~Ll~~P~~~~---y~l~~~~~i~tWll~v~s~~~~t~v 424 (508)
T PF13705_consen 348 LFLVLTALLHSLHEIVDPVLMSLSASHNRSFWRHFRALSVCLFLLVFPLYLS---YYLWSFFPIDTWLLIVTSFCVETIV 424 (508)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHHHH---HHHHHhCChHHHHHHHHHHHHHHHH
Confidence 4455556999999999999999999999999999999999999999998865 4556677788877655433 34568
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 010130 135 ETMQAILVHGFQLLDIWLHHSAGNSTNC 162 (517)
Q Consensus 135 ~~l~~~l~~~~~l~d~~~~~~~~~~~~~ 162 (517)
+++.++.+|+++++|.+....+++-+|+
T Consensus 425 kv~~sl~iY~Lf~vd~~~~~~WE~LDD~ 452 (508)
T PF13705_consen 425 KVLGSLAIYILFMVDARREEPWEKLDDY 452 (508)
T ss_pred HHHHHHHHHHHHHHHhhcccchhhcccE
Confidence 8888999999999999877776655544
No 48
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.69 E-value=1.1e-05 Score=61.65 Aligned_cols=46 Identities=28% Similarity=0.790 Sum_probs=24.9
Q ss_pred CCCccccccccccccc-cccCccchhhHHHHHHhCCCCCCCCCccccCCcCCC
Q 010130 266 DECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 317 (517)
Q Consensus 266 ~~C~IC~~~~~~~~~l-~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~~ 317 (517)
..|++|.+.+.+|+.+ .|.|+||..|+..-+. ..||+|+.+...++
T Consensus 8 LrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~------~~CPvC~~Paw~qD 54 (65)
T PF14835_consen 8 LRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG------SECPVCHTPAWIQD 54 (65)
T ss_dssp TS-SSS-S--SS-B---SSS--B-TTTGGGGTT------TB-SSS--B-S-SS
T ss_pred cCCcHHHHHhcCCceeccCccHHHHHHhHHhcC------CCCCCcCChHHHHH
Confidence 4799999999999864 8999999999977443 46999998876543
No 49
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=3.3e-05 Score=78.26 Aligned_cols=49 Identities=33% Similarity=0.661 Sum_probs=41.4
Q ss_pred cCCCCCccccccccccccccccCc-cchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 263 AYDDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~~~l~C~H~-Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
+...+|.||+.+-.+...|||.|. -|..|-+..--+ +..||+||+++..
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q----~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQ----TNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHh----hcCCCccccchHh
Confidence 446789999999999999999998 688998776545 5789999999854
No 50
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.54 E-value=5.6e-05 Score=55.53 Aligned_cols=42 Identities=24% Similarity=0.694 Sum_probs=32.2
Q ss_pred CCccccccc--ccccccccc-----CccchhhHHHHHHhCCCCCCCCCccc
Q 010130 267 ECAICREPM--AKAKKLLCN-----HLFHLACLRSWLDQGLNEMYSCPTCR 310 (517)
Q Consensus 267 ~C~IC~~~~--~~~~~l~C~-----H~Fh~~Cl~~wl~~~~~~~~~CP~CR 310 (517)
.|-||++.. .++...||. |.+|..|+.+|+.... ..+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~--~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESG--NKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcC--CCcCCCCC
Confidence 489999832 334566885 8999999999997742 46999995
No 51
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=3.9e-05 Score=77.88 Aligned_cols=48 Identities=33% Similarity=0.854 Sum_probs=35.1
Q ss_pred CCCCccccccccccccc----cccCccchhhHHHHHHhCCCCCCCCCccccCC
Q 010130 265 DDECAICREPMAKAKKL----LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 313 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l----~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~ 313 (517)
...|.||-+.+.....+ .|||+||..|+.+|++..+. ...||.||-.+
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps-~R~cpic~ik~ 55 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPS-NRGCPICQIKL 55 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCc-cCCCCceeecc
Confidence 35799994444333223 59999999999999998643 36999999444
No 52
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.00011 Score=81.27 Aligned_cols=93 Identities=16% Similarity=0.361 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhhcCCCCCcccccccccc-ccccccCccchhhH
Q 010130 214 FHLVDAILFLNIRALLSAIIKRIKGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAKA-KKLLCNHLFHLACL 292 (517)
Q Consensus 214 ~~l~~~vl~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~~~~~l~~~~~~C~IC~~~~~~~-~~l~C~H~Fh~~Cl 292 (517)
+.++.+.+.-.++.--..+.+.-+...++++.++++++.+.+....+-.-....|..|-..++-| +...|||.||..|+
T Consensus 789 ls~IkD~ii~~l~~~~~~I~qd~~~Ie~yk~~i~e~r~~l~~lr~sa~i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~ 868 (933)
T KOG2114|consen 789 LSVIKDYIIKWLNKYSTIIEQDEDAIEVYKKDIEEKRQELETLRTSAQIFQVSKCSACEGTLDLPFVHFLCGHSYHQHCL 868 (933)
T ss_pred EehhHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccceeeeeeecccCCccccceeeeecccHHHHHhh
Confidence 33444433333333223333344455566777777766554443322222345899999999988 56799999999999
Q ss_pred HHHHHhCCCCCCCCCccccCC
Q 010130 293 RSWLDQGLNEMYSCPTCRKPL 313 (517)
Q Consensus 293 ~~wl~~~~~~~~~CP~CR~~~ 313 (517)
. +. ...||.|+...
T Consensus 869 e---~~----~~~CP~C~~e~ 882 (933)
T KOG2114|consen 869 E---DK----EDKCPKCLPEL 882 (933)
T ss_pred c---cC----cccCCccchhh
Confidence 7 33 58999998743
No 53
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=6.9e-05 Score=82.67 Aligned_cols=49 Identities=20% Similarity=0.535 Sum_probs=43.4
Q ss_pred CCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 265 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
-..|+.|-....+.+...|||.||..|+.+-++.. +..||.|-+++...
T Consensus 643 ~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etR---qRKCP~Cn~aFgan 691 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETR---QRKCPKCNAAFGAN 691 (698)
T ss_pred ceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHh---cCCCCCCCCCCCcc
Confidence 46799999999999999999999999999999875 68999999987654
No 54
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0051 Score=60.29 Aligned_cols=50 Identities=24% Similarity=0.637 Sum_probs=40.1
Q ss_pred cCCCCCccccccccccccc-cccCccchhhHHHHHHhCCCCCCCCCccccCCc
Q 010130 263 AYDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 314 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~~~l-~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 314 (517)
..+.+|++|-+.-..|... +|||+||.-|+..-...+. ..+||.|-.+..
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~a--sf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDA--SFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchh--hcccCccCCCCc
Confidence 5678999999998888655 6999999999987655321 479999987764
No 55
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.00036 Score=71.57 Aligned_cols=48 Identities=31% Similarity=0.789 Sum_probs=39.1
Q ss_pred CCCCCcccccccccc-----ccccccCccchhhHHHHHHhCCCCCCCCCccccCC
Q 010130 264 YDDECAICREPMAKA-----KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 313 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~-----~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~ 313 (517)
...+|+||++.+..+ +.+.|||.|-.+||..|+.+.. ...||.|...-
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~--~~~cp~c~~ka 55 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKT--KMQCPLCSGKA 55 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhh--hhhCcccCChh
Confidence 467899999999765 4578999999999999996422 58999997654
No 56
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0004 Score=71.38 Aligned_cols=52 Identities=37% Similarity=0.767 Sum_probs=39.5
Q ss_pred CCCCCccccccccccc-----c---ccccCccchhhHHHHHHhCC---CCCCCCCccccCCcC
Q 010130 264 YDDECAICREPMAKAK-----K---LLCNHLFHLACLRSWLDQGL---NEMYSCPTCRKPLFV 315 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~-----~---l~C~H~Fh~~Cl~~wl~~~~---~~~~~CP~CR~~~~~ 315 (517)
.+..|.||++...+.. . .+|.|.||..|++.|-...+ .-...||.||.....
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 4678999999876543 2 46999999999999985431 113799999987644
No 57
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.00078 Score=68.48 Aligned_cols=46 Identities=24% Similarity=0.566 Sum_probs=35.6
Q ss_pred cCCCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 263 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
...+.|.||.+...+.+.+||||.-| |..--.. -.+||+||..+..
T Consensus 303 ~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~-----l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH-----LPQCPVCRQRIRL 348 (355)
T ss_pred CCCCceEEecCCccceeeecCCcEEE--chHHHhh-----CCCCchhHHHHHH
Confidence 34678999999999999999999966 6543333 3579999987643
No 58
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.87 E-value=0.00042 Score=75.95 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=28.5
Q ss_pred cccccCccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 280 KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 280 ~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
..+|+|.||..|+..|-.. ..+||+||..+..-
T Consensus 141 ~k~c~H~FC~~Ci~sWsR~----aqTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 141 EKHTAHYFCEECVGSWSRC----AQTCPVDRGEFGEV 173 (1134)
T ss_pred ccccccccHHHHhhhhhhh----cccCchhhhhhhee
Confidence 3489999999999999988 68999999987543
No 59
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.82 E-value=0.00065 Score=71.54 Aligned_cols=52 Identities=25% Similarity=0.672 Sum_probs=43.5
Q ss_pred CCCCccccccccccccccccCccchhhHHHHHHhC-CCCCCCCCccccCCcCC
Q 010130 265 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQG-LNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~-~~~~~~CP~CR~~~~~~ 316 (517)
+-.|.+|-++-+++....|.|.||+.|+.++...- ...+.+||+|...+..+
T Consensus 536 ~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 536 EVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred ceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 45799999999999999999999999999887652 22358999999887654
No 60
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.81 E-value=0.00042 Score=64.42 Aligned_cols=44 Identities=23% Similarity=0.436 Sum_probs=38.7
Q ss_pred CCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCC
Q 010130 266 DECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 313 (517)
Q Consensus 266 ~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~ 313 (517)
..|.||.++++.|+.+.|||.||..|...-++. ...|-+|-+.-
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k----g~~C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQK----GDECGVCGKAT 240 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhcc----CCcceecchhh
Confidence 479999999999999999999999998777766 58999997653
No 61
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.79 E-value=0.0006 Score=72.07 Aligned_cols=49 Identities=29% Similarity=0.588 Sum_probs=43.7
Q ss_pred cCCCCCcccccccccccc-ccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 263 AYDDECAICREPMAKAKK-LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~~~-l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
+.+..|++|...+.+|.. ..|||.||..|+.+|+.. +..||.|+..+..
T Consensus 19 ~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~----~~~cp~~~~~~~~ 68 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN----HQKCPVCRQELTQ 68 (391)
T ss_pred cccccCccccccccCCCCCCCCCCcccccccchhhcc----CcCCcccccccch
Confidence 456789999999999988 599999999999999998 6899999887744
No 62
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.74 E-value=0.0016 Score=66.52 Aligned_cols=47 Identities=38% Similarity=0.848 Sum_probs=38.0
Q ss_pred CCCCCcccccccccc----ccccccCccchhhHHHHHHhCCCCCCCCCccccC
Q 010130 264 YDDECAICREPMAKA----KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 312 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~----~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 312 (517)
.+..|..|-+.+... .-|||.|+||..|+.+.++++. ..+||.||+-
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~--~rsCP~Crkl 414 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNG--TRSCPNCRKL 414 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCC--CCCCccHHHH
Confidence 356799999887432 4579999999999999998765 4799999953
No 63
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=96.61 E-value=0.00075 Score=66.60 Aligned_cols=52 Identities=29% Similarity=0.693 Sum_probs=39.7
Q ss_pred CCCCcccccccccc---ccccccCccchhhHHHHHHhC-------------------CCCCCCCCccccCCcCC
Q 010130 265 DDECAICREPMAKA---KKLLCNHLFHLACLRSWLDQG-------------------LNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 265 ~~~C~IC~~~~~~~---~~l~C~H~Fh~~Cl~~wl~~~-------------------~~~~~~CP~CR~~~~~~ 316 (517)
...|.||+.-|.+. .+++|.|.||..|+..+|..- .+....||+||..+...
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 45799999999765 467999999999998776431 11246799999988543
No 64
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.49 E-value=0.002 Score=63.52 Aligned_cols=44 Identities=25% Similarity=0.661 Sum_probs=37.0
Q ss_pred CCCCcccccccccccccc-ccCccchhhHHHHHHhCCCCCCCCCcccc
Q 010130 265 DDECAICREPMAKAKKLL-CNHLFHLACLRSWLDQGLNEMYSCPTCRK 311 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~-C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 311 (517)
...|+.|...+..+.++| |||.||.+||..-|... ...||.|..
T Consensus 274 ~LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~ds---Df~CpnC~r 318 (427)
T COG5222 274 SLKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDS---DFKCPNCSR 318 (427)
T ss_pred cccCcchhhhhhCcccCccccchHHHHHHhhhhhhc---cccCCCccc
Confidence 468999999999998885 88999999998766443 589999955
No 65
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.42 E-value=0.0012 Score=50.17 Aligned_cols=43 Identities=21% Similarity=0.517 Sum_probs=30.0
Q ss_pred CCCCCcccccccccccc-ccccCccchhhHHHHHHhCCCCCCCCCc
Q 010130 264 YDDECAICREPMAKAKK-LLCNHLFHLACLRSWLDQGLNEMYSCPT 308 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~-l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~ 308 (517)
....|+|.+..+++|++ ..|||.|-.+.|.+|+.++ ....||+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~--~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRN--GSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTT--S-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhc--CCCCCCC
Confidence 35689999999999977 5899999999999999432 2689998
No 66
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.29 E-value=0.0016 Score=65.57 Aligned_cols=48 Identities=25% Similarity=0.612 Sum_probs=41.3
Q ss_pred CCCCccccccccccccc-cccCccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 265 DDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l-~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
-.+|.+|...+.++..+ -|-|.||.+||...+.. ...||+|...+-..
T Consensus 15 ~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~----~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE----SKYCPTCDIVIHKT 63 (331)
T ss_pred ceehhhccceeecchhHHHHHHHHHHHHHHHHHHH----hccCCccceeccCc
Confidence 35799999999998665 69999999999999998 69999998877443
No 67
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.0034 Score=63.32 Aligned_cols=49 Identities=22% Similarity=0.425 Sum_probs=42.9
Q ss_pred cCCCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 263 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
.+|+.|+||+..--..+..||+|.-|..||.+-+-+ .+.|=.|+..+..
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN----~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN----CKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhc----CCeeeEecceeee
Confidence 357789999988777888999999999999999988 6899999988754
No 68
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.18 E-value=0.011 Score=50.45 Aligned_cols=31 Identities=23% Similarity=0.860 Sum_probs=25.3
Q ss_pred cCCCCCcccccccccc--ccccccCccchhhHH
Q 010130 263 AYDDECAICREPMAKA--KKLLCNHLFHLACLR 293 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~--~~l~C~H~Fh~~Cl~ 293 (517)
+.+..|++|-..+... ...||||.||..|++
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 3467899999999765 345999999999974
No 69
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.0017 Score=64.26 Aligned_cols=45 Identities=22% Similarity=0.439 Sum_probs=39.7
Q ss_pred CCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCC
Q 010130 265 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 313 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~ 313 (517)
...|-||...|..|+...|||.||..|-.+-++. ...|++|-+..
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk----~~~c~vC~~~t 285 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK----GEKCYVCSQQT 285 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhcccccc----CCcceeccccc
Confidence 4569999999999999999999999998877766 58999998764
No 70
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.0028 Score=62.51 Aligned_cols=42 Identities=31% Similarity=0.680 Sum_probs=34.5
Q ss_pred CCCCccccccccccccccccCc-cchhhHHHHHHhCCCCCCCCCccccCCc
Q 010130 265 DDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLF 314 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~C~H~-Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 314 (517)
+.-|+||++...+++.|+|||. -|.+|-.. -..||+||+.+.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr--------m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKR--------MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccc--------cccCchHHHHHH
Confidence 5679999999999999999996 57777532 368999998763
No 71
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.0085 Score=61.89 Aligned_cols=54 Identities=26% Similarity=0.506 Sum_probs=38.6
Q ss_pred hhhhcCCCCCccccccccc---cccccccCccchhhHHHHHHhCC----CCCCCCCccccC
Q 010130 259 EELRAYDDECAICREPMAK---AKKLLCNHLFHLACLRSWLDQGL----NEMYSCPTCRKP 312 (517)
Q Consensus 259 ~~l~~~~~~C~IC~~~~~~---~~~l~C~H~Fh~~Cl~~wl~~~~----~~~~~CP~CR~~ 312 (517)
+.....-..|.||++...- -+.+||+|+||..|+..++.... -....||-|..+
T Consensus 178 ~~F~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 178 EKFVNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred HHHHhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 3333455689999998753 36789999999999999986531 124678777654
No 72
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.41 E-value=0.0073 Score=44.92 Aligned_cols=47 Identities=26% Similarity=0.547 Sum_probs=36.6
Q ss_pred CCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcCCC
Q 010130 265 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 317 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~~ 317 (517)
...|..|...-.....+||||..|..|...+- -+.||.|-+++...+
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~r------YngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPGER------YNGCPFCGTPFEFDD 53 (55)
T ss_pred ceeEEEccccccccccccccceeeccccChhh------ccCCCCCCCcccCCC
Confidence 34688888777778899999999999976432 368999999886553
No 73
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.032 Score=56.18 Aligned_cols=47 Identities=19% Similarity=0.442 Sum_probs=38.9
Q ss_pred cCCCCCcccccccccccccc-ccCccchhhHHHHHHhCCCCCCCCCccccCC
Q 010130 263 AYDDECAICREPMAKAKKLL-CNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 313 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~~~l~-C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~ 313 (517)
.....|++|+..-.+|..+. -|-+||..|+-+.+.+ +..||+--.+.
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~----~~~CPVT~~p~ 345 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN----YGHCPVTGYPA 345 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHHh----cCCCCccCCcc
Confidence 34678999999988886664 5999999999999997 78999875554
No 74
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=95.23 E-value=0.015 Score=52.73 Aligned_cols=50 Identities=28% Similarity=0.700 Sum_probs=38.3
Q ss_pred cCCCCCccccccccccccccccC-----ccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 263 AYDDECAICREPMAKAKKLLCNH-----LFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~~~l~C~H-----~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
..+..|=||.+.-. ...-||.. .-|.+|+..|+..+. ...||.|+.+...
T Consensus 6 ~~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~--~~~CeiC~~~Y~i 60 (162)
T PHA02825 6 LMDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSK--NKSCKICNGPYNI 60 (162)
T ss_pred CCCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCC--CCcccccCCeEEE
Confidence 45678999998854 33457765 449999999998753 5899999998744
No 75
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=94.98 E-value=0.01 Score=68.86 Aligned_cols=53 Identities=38% Similarity=0.741 Sum_probs=40.4
Q ss_pred cCCCCCccccccc---cccccccccCccchhhHHHHHHhCC--C----CCCCCCccccCCcC
Q 010130 263 AYDDECAICREPM---AKAKKLLCNHLFHLACLRSWLDQGL--N----EMYSCPTCRKPLFV 315 (517)
Q Consensus 263 ~~~~~C~IC~~~~---~~~~~l~C~H~Fh~~Cl~~wl~~~~--~----~~~~CP~CR~~~~~ 315 (517)
+.|+.|-||..+- ..++.|.|+|.||..|.+.-|++.- + .-.+||+|+.++..
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 4578899998664 2357899999999999998887731 1 02589999998854
No 76
>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin. Ubiquitin is recognised by helices alpha-1 and -3 in in the UBA domain. EDD is involved in DNA damage repair pathways and binds to mono-ubiquitinated proteins [].; GO: 0043130 ubiquitin binding; PDB: 2QHO_H.
Probab=94.85 E-value=0.056 Score=38.77 Aligned_cols=36 Identities=36% Similarity=0.574 Sum_probs=31.4
Q ss_pred HHHHHHHhhCCCCChHHHHHHhhccC-chhHHHHhhh
Q 010130 480 AMAETVREVLPHMPEDLIFQDLQRTN-SATITVNNLL 515 (517)
Q Consensus 480 ~~~~~v~~~~~~~~~~~i~~~~~~~~-~~~~t~~~~~ 515 (517)
..++|++.||+.-+.++|.++|+||+ .|..-+||+|
T Consensus 11 dlI~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlL 47 (53)
T PF11547_consen 11 DLINQAQVVLQGKSRNVIIRELQRTNLDVNLAVNNLL 47 (53)
T ss_dssp HHHHHHHHHSTTS-HHHHHHHHHHTTT-HHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHhcccHHHHHHHHh
Confidence 46789999999999999999999998 6899999998
No 77
>PHA02862 5L protein; Provisional
Probab=94.60 E-value=0.021 Score=50.85 Aligned_cols=48 Identities=21% Similarity=0.683 Sum_probs=37.1
Q ss_pred CCCCcccccccccccccccc-----CccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 265 DDECAICREPMAKAKKLLCN-----HLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~C~-----H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
++.|=||.+.-++. .-||. ..-|.+|+.+|+.... ...||.|+.+...
T Consensus 2 ~diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~--k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSK--KKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCC--CcCccCCCCeEEE
Confidence 46799999986544 45776 4689999999997643 5899999998743
No 78
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.58 E-value=0.022 Score=57.42 Aligned_cols=57 Identities=23% Similarity=0.496 Sum_probs=43.2
Q ss_pred CCCCChhhhhcCCCCCccccccccccccccccCccchhhHHH--HHHhCCCCCCCCCccccCC
Q 010130 253 LPDATSEELRAYDDECAICREPMAKAKKLLCNHLFHLACLRS--WLDQGLNEMYSCPTCRKPL 313 (517)
Q Consensus 253 l~~~~~~~l~~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~--wl~~~~~~~~~CP~CR~~~ 313 (517)
+-+.+.++.++++..|.||-+...-.-.+||+|..|-.|-.. -|.. .+.||.||...
T Consensus 49 lttsSaddtDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~----~K~C~~CrTE~ 107 (493)
T COG5236 49 LTTSSADDTDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYM----QKGCPLCRTET 107 (493)
T ss_pred cccccccccccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHh----ccCCCcccccc
Confidence 334445565566778999999988888999999999999643 2333 48999999865
No 79
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.51 E-value=0.035 Score=53.70 Aligned_cols=51 Identities=16% Similarity=0.264 Sum_probs=41.7
Q ss_pred CCCCCccccccccccc---c-ccccCccchhhHHHHHHhCCCCCCCCCccccCCcCCCC
Q 010130 264 YDDECAICREPMAKAK---K-LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRR 318 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~---~-l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~~~ 318 (517)
....|++|.+.+.+.. . -||||+++..|....+.. ...||+|-.++.+.+-
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~----D~v~pv~d~plkdrdi 274 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK----DMVDPVTDKPLKDRDI 274 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc----cccccCCCCcCcccce
Confidence 3467999999998753 2 399999999999998887 5899999998876543
No 80
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.47 E-value=0.026 Score=41.02 Aligned_cols=42 Identities=29% Similarity=0.702 Sum_probs=20.8
Q ss_pred Ccccccccccc-c-cc--cccCccchhhHHHHHHhCCCCCCCCCccccC
Q 010130 268 CAICREPMAKA-K-KL--LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 312 (517)
Q Consensus 268 C~IC~~~~~~~-~-~l--~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 312 (517)
|++|.+++... + .. +||+..|..|...-++.. ...||-||++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~---~g~CPgCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENE---GGRCPGCREP 46 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS----SB-TTT--B
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhcc---CCCCCCCCCC
Confidence 78999998432 2 23 689999999977766532 6899999986
No 81
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.42 E-value=0.044 Score=61.85 Aligned_cols=35 Identities=29% Similarity=0.598 Sum_probs=27.3
Q ss_pred cCCCCCccccccccc-c-ccccccCccchhhHHHHHH
Q 010130 263 AYDDECAICREPMAK-A-KKLLCNHLFHLACLRSWLD 297 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~-~-~~l~C~H~Fh~~Cl~~wl~ 297 (517)
+.++.|.+|...+-. | ...||||.||++|+.+-..
T Consensus 815 ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred cCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 446789999988753 3 4569999999999976544
No 82
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=94.28 E-value=0.023 Score=41.28 Aligned_cols=40 Identities=28% Similarity=0.711 Sum_probs=26.8
Q ss_pred Cccccccccccc--ccccc-----CccchhhHHHHHHhCCCCCCCCCcc
Q 010130 268 CAICREPMAKAK--KLLCN-----HLFHLACLRSWLDQGLNEMYSCPTC 309 (517)
Q Consensus 268 C~IC~~~~~~~~--~l~C~-----H~Fh~~Cl~~wl~~~~~~~~~CP~C 309 (517)
|-||++.-.+.. ..||+ -.-|.+|+.+|+.... ..+|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~--~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESG--NRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT---SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcC--CCcCCCC
Confidence 678888766543 45766 3679999999998632 5789987
No 83
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.08 E-value=0.036 Score=50.97 Aligned_cols=51 Identities=29% Similarity=0.740 Sum_probs=37.0
Q ss_pred CCCcccccccccc-------ccccccCccchhhHHHHHHhCCCC-------CCCCCccccCCcCC
Q 010130 266 DECAICREPMAKA-------KKLLCNHLFHLACLRSWLDQGLNE-------MYSCPTCRKPLFVG 316 (517)
Q Consensus 266 ~~C~IC~~~~~~~-------~~l~C~H~Fh~~Cl~~wl~~~~~~-------~~~CP~CR~~~~~~ 316 (517)
..|.||+..--++ ....||.-||.-|+..||+.-... -..||.|..++..+
T Consensus 166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 4699998764332 345899999999999999752100 14799999988654
No 84
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=93.99 E-value=0.078 Score=55.02 Aligned_cols=34 Identities=26% Similarity=0.804 Sum_probs=25.7
Q ss_pred ccCccchhhHHHHHHhCC---------CCCCCCCccccCCcCC
Q 010130 283 CNHLFHLACLRSWLDQGL---------NEMYSCPTCRKPLFVG 316 (517)
Q Consensus 283 C~H~Fh~~Cl~~wl~~~~---------~~~~~CP~CR~~~~~~ 316 (517)
|...+|.+|+-+|+..++ .++.+||+||+.+...
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCil 353 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCIL 353 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceee
Confidence 446678999999997642 1257999999988653
No 85
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=93.52 E-value=0.044 Score=55.18 Aligned_cols=51 Identities=27% Similarity=0.531 Sum_probs=35.7
Q ss_pred CCCCCcccccccccccc----ccccCccchhhHHHHHHhCCCCCCCCCccccCCcCCC
Q 010130 264 YDDECAICREPMAKAKK----LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 317 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~----l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~~ 317 (517)
+++.|+.|+|++....+ -|||-..|.-|...--+. . +..||-||+...+.+
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~-l--ngrcpacrr~y~den 67 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQN-L--NGRCPACRRKYDDEN 67 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhh-c--cCCChHhhhhccccc
Confidence 45669999999976533 379988888886543322 1 479999999765544
No 86
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.41 E-value=0.043 Score=55.80 Aligned_cols=45 Identities=31% Similarity=0.704 Sum_probs=38.5
Q ss_pred CCCccccccccc------cccccccCccchhhHHHHHHhCCCCCCCCCccccCC
Q 010130 266 DECAICREPMAK------AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 313 (517)
Q Consensus 266 ~~C~IC~~~~~~------~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~ 313 (517)
..|-||-++|+. |+.|.|||.+|..|+..-+... ...||.||.+.
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~---~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNS---RILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCc---eeeccCCCCcc
Confidence 479999999964 5678899999999998887775 68899999985
No 87
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=92.98 E-value=0.3 Score=44.47 Aligned_cols=78 Identities=22% Similarity=0.360 Sum_probs=50.2
Q ss_pred CCCCccccccccccccccc------------c-CccchhhHHHHHHhCC---------------------------CCCC
Q 010130 265 DDECAICREPMAKAKKLLC------------N-HLFHLACLRSWLDQGL---------------------------NEMY 304 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~C------------~-H~Fh~~Cl~~wl~~~~---------------------------~~~~ 304 (517)
|..|+||+|.-.+.+.|-| + -.-|..|+++.-+... ....
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 81 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPEL 81 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccccc
Confidence 5689999999888777644 3 2347889998765420 0146
Q ss_pred CCCccccCCcC------------CCCcccCCCCCCCCCChHHHHHHhhcC
Q 010130 305 SCPTCRKPLFV------------GRREIEANSRPGEVSSDEQLARQLSMG 342 (517)
Q Consensus 305 ~CP~CR~~~~~------------~~~~~~~~~~~~~~~~~~~l~~~~~~~ 342 (517)
.||+||..|.. ..+..-....+...+...++....+..
T Consensus 82 ~CPLCRG~V~GWtvve~AR~~LN~K~RsC~~e~C~F~GtY~eLrKHar~~ 131 (162)
T PF07800_consen 82 ACPLCRGEVKGWTVVEPARRFLNAKKRSCSQESCSFSGTYSELRKHARSE 131 (162)
T ss_pred cCccccCceeceEEchHHHHHhccCCccCcccccccccCHHHHHHHHHhh
Confidence 89999998832 112223344466667777777666543
No 88
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=92.91 E-value=0.057 Score=60.53 Aligned_cols=52 Identities=31% Similarity=0.841 Sum_probs=37.9
Q ss_pred hhhcCCCCCccccccccccc-cc---cccCccchhhHHHHHHhC---CCCCCCCCcccc
Q 010130 260 ELRAYDDECAICREPMAKAK-KL---LCNHLFHLACLRSWLDQG---LNEMYSCPTCRK 311 (517)
Q Consensus 260 ~l~~~~~~C~IC~~~~~~~~-~l---~C~H~Fh~~Cl~~wl~~~---~~~~~~CP~CR~ 311 (517)
++.....+|.||.+.+.... .+ .|-|+||..||++|-.+. .+....||.|+.
T Consensus 186 ~l~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 186 QLSNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred HHhcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 33345678999999986432 22 578999999999998752 123578999984
No 89
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=92.45 E-value=0.47 Score=41.91 Aligned_cols=50 Identities=26% Similarity=0.486 Sum_probs=38.5
Q ss_pred CCCccccccccccccc----cccCccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 266 DECAICREPMAKAKKL----LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 266 ~~C~IC~~~~~~~~~l----~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
.+|.||.|.-.+...| =||-..|..|--..++... -...||.|+..+..+
T Consensus 81 YeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~-~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 81 YECNICKETSAEERFLKPNECCGYSICNACYANLWKFCN-LYPVCPVCKTSFKSS 134 (140)
T ss_pred eeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcc-cCCCCCccccccccc
Confidence 5799999998887666 3999999999866555432 268999999987543
No 90
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.36 E-value=0.044 Score=61.71 Aligned_cols=48 Identities=29% Similarity=0.565 Sum_probs=40.0
Q ss_pred CCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 266 DECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 266 ~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
..|.||.+ .+.+...+|||.||.+|+..-++... ...||.||..+..+
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~--~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSE--NAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhcccccc--CCCCcHHHHHHHHH
Confidence 68999999 77788899999999999988877643 34799999987544
No 91
>PHA03096 p28-like protein; Provisional
Probab=92.13 E-value=0.073 Score=53.69 Aligned_cols=45 Identities=24% Similarity=0.539 Sum_probs=32.7
Q ss_pred CCCcccccccccc--------ccccccCccchhhHHHHHHhCCCCCCCCCcccc
Q 010130 266 DECAICREPMAKA--------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRK 311 (517)
Q Consensus 266 ~~C~IC~~~~~~~--------~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 311 (517)
..|.||++..... ..-.|.|.||..|++.|-.... ...+||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~-~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESL-YKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhh-hcccCccccc
Confidence 4799999986431 1236999999999999987643 2456666655
No 92
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=91.13 E-value=0.064 Score=47.56 Aligned_cols=33 Identities=21% Similarity=0.534 Sum_probs=26.5
Q ss_pred CCCCccccccccc--cc-ccccc------CccchhhHHHHHH
Q 010130 265 DDECAICREPMAK--AK-KLLCN------HLFHLACLRSWLD 297 (517)
Q Consensus 265 ~~~C~IC~~~~~~--~~-~l~C~------H~Fh~~Cl~~wl~ 297 (517)
..+|+||++.+.+ ++ -++|| |.||.+|+..|-+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 3479999999977 43 35777 9999999999943
No 93
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=90.86 E-value=0.13 Score=51.51 Aligned_cols=43 Identities=35% Similarity=0.838 Sum_probs=35.9
Q ss_pred CCCCcccccccc----ccccccccCccchhhHHHHHHhCCCCCCCCCcccc
Q 010130 265 DDECAICREPMA----KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRK 311 (517)
Q Consensus 265 ~~~C~IC~~~~~----~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 311 (517)
+..|+||.+.+. .+..++|||.-|..|....... +.+||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~----~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICE----GYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhcc----CCCCCcccc
Confidence 344999998874 4577899999999999887776 599999988
No 94
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=89.83 E-value=0.12 Score=51.56 Aligned_cols=41 Identities=37% Similarity=0.815 Sum_probs=29.8
Q ss_pred CCccccccccc-cccccccCccchhhHHHHHHhCCCCCCCCCccccCC
Q 010130 267 ECAICREPMAK-AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 313 (517)
Q Consensus 267 ~C~IC~~~~~~-~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~ 313 (517)
.|--|--.+.. ++.+||.|+||.+|-+. +. .+.||.|-..+
T Consensus 92 fCd~Cd~PI~IYGRmIPCkHvFCl~CAr~--~~----dK~Cp~C~d~V 133 (389)
T KOG2932|consen 92 FCDRCDFPIAIYGRMIPCKHVFCLECARS--DS----DKICPLCDDRV 133 (389)
T ss_pred eecccCCcceeeecccccchhhhhhhhhc--Cc----cccCcCcccHH
Confidence 47777555443 46679999999999754 22 47999997765
No 95
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=89.74 E-value=0.16 Score=52.77 Aligned_cols=36 Identities=28% Similarity=0.472 Sum_probs=31.6
Q ss_pred CCCCCccccccccccccccccCccchhhHHHHHHhC
Q 010130 264 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQG 299 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~ 299 (517)
++..|+||-..|++|+.|||+|..|..|-+.-+.+.
T Consensus 3 eelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~t 38 (699)
T KOG4367|consen 3 EELKCPVCGSFYREPIILPCSHNLCQACARNILVQT 38 (699)
T ss_pred ccccCceehhhccCceEeecccHHHHHHHHhhcccC
Confidence 456899999999999999999999999998766653
No 96
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.65 E-value=0.13 Score=56.00 Aligned_cols=38 Identities=26% Similarity=0.646 Sum_probs=30.5
Q ss_pred CCcccccccc----ccccccccCccchhhHHHHHHhCCCCCCCCCcccc
Q 010130 267 ECAICREPMA----KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRK 311 (517)
Q Consensus 267 ~C~IC~~~~~----~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 311 (517)
.|.||+..|. .|+.+.|||..|..|+..-.. .+|| |+.
T Consensus 13 ~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn------~scp-~~~ 54 (861)
T KOG3161|consen 13 LCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN------ASCP-TKR 54 (861)
T ss_pred hchHHHHHHHHHhcCcccccccchHHHHHHHhHhh------ccCC-CCc
Confidence 6999988875 477889999999999976554 5899 644
No 97
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=89.29 E-value=0.1 Score=50.76 Aligned_cols=42 Identities=26% Similarity=0.618 Sum_probs=28.4
Q ss_pred CCcccccccc-cc-ccccccCccchhhHHHHHHhCCCCCCCCCccccCCc
Q 010130 267 ECAICREPMA-KA-KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 314 (517)
Q Consensus 267 ~C~IC~~~~~-~~-~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 314 (517)
.|..|...-. ++ ..+.|+|+||..|... .. ...||+||+++.
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~--~~----~~~C~lCkk~ir 48 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKA--SS----PDVCPLCKKSIR 48 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhccc--CC----ccccccccceee
Confidence 3776665433 22 2358999999999753 11 249999999873
No 98
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.29 E-value=0.24 Score=54.88 Aligned_cols=59 Identities=37% Similarity=0.707 Sum_probs=48.5
Q ss_pred hCCCCChhhhhcCCCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcCCCC
Q 010130 252 ALPDATSEELRAYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRR 318 (517)
Q Consensus 252 ~l~~~~~~~l~~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~~~ 318 (517)
.++.++.+++.+.++.|.+|++.+ ..+..+|. |..|+.+|+.. +..||.|+.....++.
T Consensus 466 ~~s~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~---~~~~l~~~~~~----~~~~pl~~~~~~~~~~ 524 (543)
T KOG0802|consen 466 SLSEATPSQLREPNDVCAICYQEM-SARITPCS---HALCLRKWLYV----QEVCPLCHTYMKEDDF 524 (543)
T ss_pred CCCCCChhhhhcccCcchHHHHHH-Hhcccccc---chhHHHhhhhh----ccccCCCchhhhcccc
Confidence 456667777878889999999999 66777888 89999999998 5899999998765543
No 99
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.02 E-value=0.058 Score=55.44 Aligned_cols=46 Identities=28% Similarity=0.684 Sum_probs=39.2
Q ss_pred CCCccccccccc----cccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 266 DECAICREPMAK----AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 266 ~~C~IC~~~~~~----~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
..|+||.+.+.. ...+-|||.+|..||.+|+.. ...||.||+.++.
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~----~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLAT----KRKLPSCRRELPK 246 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHH----HHHhHHHHhhhhh
Confidence 479999988753 456789999999999999998 5899999998854
No 100
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=88.67 E-value=0.26 Score=50.17 Aligned_cols=42 Identities=31% Similarity=0.740 Sum_probs=33.0
Q ss_pred CCCccccccccccccccc--cCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 266 DECAICREPMAKAKKLLC--NHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 266 ~~C~IC~~~~~~~~~l~C--~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
.+|+||.+.+..| ...| ||.-|..|-.+ . ...||.||.++..
T Consensus 49 leCPvC~~~l~~P-i~QC~nGHlaCssC~~~---~----~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 49 LDCPVCFNPLSPP-IFQCDNGHLACSSCRTK---V----SNKCPTCRLPIGN 92 (299)
T ss_pred ccCchhhccCccc-ceecCCCcEehhhhhhh---h----cccCCcccccccc
Confidence 4799999999877 4456 69999999642 2 4789999998863
No 101
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=88.31 E-value=0.3 Score=34.74 Aligned_cols=40 Identities=25% Similarity=0.747 Sum_probs=23.1
Q ss_pred Cccccccccccccc---cccCccchhhHHHHHHhCCCCCCCCCcc
Q 010130 268 CAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTC 309 (517)
Q Consensus 268 C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~~~~~~~~CP~C 309 (517)
|.+|.+....+.+= .|+=.+|..|+..++.... ...||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~--~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRS--NPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-S--S-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCC--CCCCcCC
Confidence 67888877666543 4888999999999998742 2379988
No 102
>PF04641 Rtf2: Rtf2 RING-finger
Probab=88.20 E-value=0.37 Score=48.17 Aligned_cols=48 Identities=19% Similarity=0.348 Sum_probs=37.3
Q ss_pred CCCCCcccccccccc----ccccccCccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 264 YDDECAICREPMAKA----KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~----~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
....|||+...|... ...||||+|...|+.+-- . ...||+|-.++...
T Consensus 112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~----~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 112 GRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-K----SKKCPVCGKPFTEE 163 (260)
T ss_pred ceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-c----cccccccCCccccC
Confidence 456799999999543 224999999999998863 2 46899999988754
No 103
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.80 E-value=0.18 Score=45.85 Aligned_cols=31 Identities=29% Similarity=0.670 Sum_probs=24.6
Q ss_pred hhhhcCCCCCcccccccccc---ccccccCccch
Q 010130 259 EELRAYDDECAICREPMAKA---KKLLCNHLFHL 289 (517)
Q Consensus 259 ~~l~~~~~~C~IC~~~~~~~---~~l~C~H~Fh~ 289 (517)
+.+.+...+|.||+|+++.. -+|||-.+||+
T Consensus 171 DVL~ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 171 DVLKDDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred chhcccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 34445667899999999876 46899999986
No 104
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.72 E-value=1.2 Score=46.32 Aligned_cols=46 Identities=22% Similarity=0.524 Sum_probs=35.9
Q ss_pred CCCcccccccc---ccccccccCccchhhHHHHHHhCCCCCCCCCccccC
Q 010130 266 DECAICREPMA---KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 312 (517)
Q Consensus 266 ~~C~IC~~~~~---~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 312 (517)
-.|||=.+.-. .|++|.|||+.+.+-+.+--..+.. ...||.|-..
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~-sfKCPYCP~e 383 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQ-SFKCPYCPVE 383 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCe-eeeCCCCCcc
Confidence 46999777654 4799999999999999987776522 3789999543
No 105
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=87.35 E-value=0.18 Score=59.16 Aligned_cols=43 Identities=26% Similarity=0.539 Sum_probs=38.4
Q ss_pred CCCcccccccc-ccccccccCccchhhHHHHHHhCCCCCCCCCccccC
Q 010130 266 DECAICREPMA-KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 312 (517)
Q Consensus 266 ~~C~IC~~~~~-~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 312 (517)
..|.||.+.+. .+-...|||.+|..|...|++. +..||+|+..
T Consensus 1154 ~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~----~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1154 FVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA----SSRCPICKSI 1197 (1394)
T ss_pred cchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH----hccCcchhhh
Confidence 47999999998 5677899999999999999999 7999999853
No 106
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=86.92 E-value=0.43 Score=47.57 Aligned_cols=44 Identities=27% Similarity=0.613 Sum_probs=34.0
Q ss_pred CCccccccc-ccc-ccc---cccCccchhhHHHHHHhCCCCCCCCCccccCC
Q 010130 267 ECAICREPM-AKA-KKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 313 (517)
Q Consensus 267 ~C~IC~~~~-~~~-~~l---~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~ 313 (517)
.|++|..+- -.| .++ +|+|.-|.+|.+.-+..+ ...||-|-..+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g---~~~CpeC~~iL 50 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLG---PAQCPECMVIL 50 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcC---CCCCCcccchh
Confidence 599998763 223 121 999999999999999886 68999996654
No 107
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=86.46 E-value=0.44 Score=53.33 Aligned_cols=52 Identities=21% Similarity=0.469 Sum_probs=38.3
Q ss_pred cCCCCCcccccccccc--ccccccC-----ccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 263 AYDDECAICREPMAKA--KKLLCNH-----LFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~--~~l~C~H-----~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
+++..|-||..+-... -.=||.. .-|.+|+.+|++.+. ...|-+|+.++.-+
T Consensus 10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~--~~kCdiChy~~~Fk 68 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSG--TKKCDICHYEYKFK 68 (1175)
T ss_pred ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCC--Ccceeeecceeeee
Confidence 3457899999775433 3337763 579999999998643 58999999987443
No 108
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=85.67 E-value=0.26 Score=35.47 Aligned_cols=43 Identities=33% Similarity=0.690 Sum_probs=25.2
Q ss_pred Ccccccccccccccccc-CccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 268 CAICREPMAKAKKLLCN-HLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 268 C~IC~~~~~~~~~l~C~-H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
|--|+-. +.-...|. |..|..|+...+.. +..||+|..+++.+
T Consensus 5 CKsCWf~--~k~Li~C~dHYLCl~CLt~ml~~----s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 5 CKSCWFA--NKGLIKCSDHYLCLNCLTLMLSR----SDRCPICGKPLPTK 48 (50)
T ss_dssp --SS-S----SSEEE-SS-EEEHHHHHHT-SS----SSEETTTTEE----
T ss_pred Chhhhhc--CCCeeeecchhHHHHHHHHHhcc----ccCCCcccCcCccc
Confidence 5555532 33445787 99999999998888 68999999988653
No 109
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.60 E-value=0.29 Score=47.80 Aligned_cols=51 Identities=25% Similarity=0.647 Sum_probs=37.7
Q ss_pred CCCCCccccccccccccc----ccc-----CccchhhHHHHHHhCC----CCCCCCCccccCCc
Q 010130 264 YDDECAICREPMAKAKKL----LCN-----HLFHLACLRSWLDQGL----NEMYSCPTCRKPLF 314 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~l----~C~-----H~Fh~~Cl~~wl~~~~----~~~~~CP~CR~~~~ 314 (517)
.|..|=||+..=++...- ||. |.-|.+|+..|.+.+. -...+||-|+....
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 456799999887665332 664 8899999999998642 12468999998753
No 110
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.92 E-value=0.44 Score=47.31 Aligned_cols=35 Identities=29% Similarity=0.598 Sum_probs=26.5
Q ss_pred ccCccchhhHHHHHHhC---------CCCCCCCCccccCCcCCC
Q 010130 283 CNHLFHLACLRSWLDQG---------LNEMYSCPTCRKPLFVGR 317 (517)
Q Consensus 283 C~H~Fh~~Cl~~wl~~~---------~~~~~~CP~CR~~~~~~~ 317 (517)
|...+|.+|+-+|+... ..++.+||+||+.+...+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d 368 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD 368 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence 66788999999998643 122689999999986543
No 111
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.82 E-value=0.42 Score=46.10 Aligned_cols=39 Identities=38% Similarity=0.725 Sum_probs=29.9
Q ss_pred CccccccccccccccccCc-cchhhHHHHHHhCCCCCCCCCccccCCc
Q 010130 268 CAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLF 314 (517)
Q Consensus 268 C~IC~~~~~~~~~l~C~H~-Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 314 (517)
|-.|.+.-.....+||.|. +|..|-.+ -..||+|+.+..
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~--------~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES--------LRICPICRSPKT 200 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc--------CccCCCCcChhh
Confidence 9999888777777899986 77777533 257999998653
No 112
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=83.21 E-value=0.34 Score=53.97 Aligned_cols=50 Identities=26% Similarity=0.557 Sum_probs=41.0
Q ss_pred CCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 265 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
..+|+||...+.++..+.|.|.||..|+..-+..... ...||+|+..+..
T Consensus 21 ~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~-~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 21 ILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKG-PKQCALCKSDIEK 70 (684)
T ss_pred hccCCceeEEeeccchhhhhHHHHhhhhhceeeccCc-cccchhhhhhhhh
Confidence 4589999999999999999999999999876655322 4799999976643
No 113
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=81.20 E-value=0.71 Score=44.69 Aligned_cols=45 Identities=29% Similarity=0.690 Sum_probs=34.2
Q ss_pred CCCCCccccccc-ccc-cc-c--c-ccCccchhhHHHHHHhCCCCCCCCC--cccc
Q 010130 264 YDDECAICREPM-AKA-KK-L--L-CNHLFHLACLRSWLDQGLNEMYSCP--TCRK 311 (517)
Q Consensus 264 ~~~~C~IC~~~~-~~~-~~-l--~-C~H~Fh~~Cl~~wl~~~~~~~~~CP--~CR~ 311 (517)
.|..|++|..+- -.| ++ + | |-|..|.+|++.-+..+ ...|| -|-+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~G---pAqCP~~gC~k 61 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRG---PAQCPYKGCGK 61 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCC---CCCCCCccHHH
Confidence 356899999774 233 22 2 5 99999999999999886 57999 7743
No 114
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=80.12 E-value=1.1 Score=50.32 Aligned_cols=49 Identities=16% Similarity=0.154 Sum_probs=35.6
Q ss_pred CCCCccccccccccc----ccc---ccCccchhhHHHHHHhC--CCCCCCCCccccCC
Q 010130 265 DDECAICREPMAKAK----KLL---CNHLFHLACLRSWLDQG--LNEMYSCPTCRKPL 313 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~----~l~---C~H~Fh~~Cl~~wl~~~--~~~~~~CP~CR~~~ 313 (517)
.+.|.+|.-++.+++ ..| |+|.||..||.+|.++- ...+-.|+.|..-+
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 467888888777632 234 99999999999999862 22346778887655
No 115
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=74.99 E-value=1.7 Score=48.62 Aligned_cols=25 Identities=28% Similarity=0.717 Sum_probs=22.0
Q ss_pred cccccCccchhhHHHHHHhCCCCCCCCCc
Q 010130 280 KLLCNHLFHLACLRSWLDQGLNEMYSCPT 308 (517)
Q Consensus 280 ~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~ 308 (517)
...|+|+-|.+|...|++. +..||.
T Consensus 1045 Cg~C~Hv~H~sc~~eWf~~----gd~Cps 1069 (1081)
T KOG0309|consen 1045 CGTCGHVGHTSCMMEWFRT----GDVCPS 1069 (1081)
T ss_pred hccccccccHHHHHHHHhc----CCcCCC
Confidence 3589999999999999999 578985
No 116
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=73.92 E-value=2.5 Score=31.07 Aligned_cols=46 Identities=26% Similarity=0.597 Sum_probs=22.9
Q ss_pred CCCccccccccccccc-cccCccchhhHHHHHHhCC-CCCCCCCccccC
Q 010130 266 DECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGL-NEMYSCPTCRKP 312 (517)
Q Consensus 266 ~~C~IC~~~~~~~~~l-~C~H~Fh~~Cl~~wl~~~~-~~~~~CP~CR~~ 312 (517)
..|+|....+..|.+. .|.|.-|.+ +..|++... .....||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 4699999999888765 799985543 456665421 124789999864
No 117
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=70.27 E-value=2.3 Score=40.63 Aligned_cols=45 Identities=22% Similarity=0.638 Sum_probs=35.9
Q ss_pred CCCcccccccccccc-ccccCccchhhHHHHHHhCCCCCCCCCccccCCc
Q 010130 266 DECAICREPMAKAKK-LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 314 (517)
Q Consensus 266 ~~C~IC~~~~~~~~~-l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 314 (517)
..|.+|.+..-.+++ -.||=.+|..|+...+.+ ...||.|-.-++
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~----~~~cphc~d~w~ 227 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR----RDICPHCGDLWT 227 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcc----cCcCCchhcccC
Confidence 479999988655543 478888999999999988 589999965443
No 118
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.84 E-value=3.3 Score=46.79 Aligned_cols=36 Identities=25% Similarity=0.582 Sum_probs=27.7
Q ss_pred cCCCCCcccccccc-------ccccccccCccchhhHHHHHHh
Q 010130 263 AYDDECAICREPMA-------KAKKLLCNHLFHLACLRSWLDQ 298 (517)
Q Consensus 263 ~~~~~C~IC~~~~~-------~~~~l~C~H~Fh~~Cl~~wl~~ 298 (517)
..+..|.-|.+... ..+.+.|||.||..|+..-..+
T Consensus 782 ~~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~ 824 (846)
T KOG2066|consen 782 SVEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLR 824 (846)
T ss_pred eehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHh
Confidence 34568999998754 2356799999999999776665
No 120
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=66.31 E-value=6.3 Score=39.06 Aligned_cols=26 Identities=8% Similarity=0.287 Sum_probs=16.9
Q ss_pred hHHHHHHH-HHHHhhCCCCChHHHHHH
Q 010130 475 IANILAMA-ETVREVLPHMPEDLIFQD 500 (517)
Q Consensus 475 ~~~l~~~~-~~v~~~~~~~~~~~i~~~ 500 (517)
..++.++. .||++||-++.-.|--+|
T Consensus 224 L~qL~~~L~~qIq~vfeeLt~~vQEKD 250 (285)
T PF06937_consen 224 LKQLNEKLLQQIQDVFEELTQQVQEKD 250 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433 678888887777776665
No 121
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.81 E-value=5.1 Score=42.44 Aligned_cols=35 Identities=29% Similarity=0.640 Sum_probs=26.0
Q ss_pred CCCCcccccccccc----ccccccCccchhhHHHHHHhC
Q 010130 265 DDECAICREPMAKA----KKLLCNHLFHLACLRSWLDQG 299 (517)
Q Consensus 265 ~~~C~IC~~~~~~~----~~l~C~H~Fh~~Cl~~wl~~~ 299 (517)
..+|.||..+.... ....|+|.||.+|..+.++..
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVK 184 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhh
Confidence 45899999444332 235799999999999888753
No 122
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=64.35 E-value=5.8 Score=40.57 Aligned_cols=46 Identities=33% Similarity=0.621 Sum_probs=34.4
Q ss_pred CCCcccccccccc--ccc--cccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 266 DECAICREPMAKA--KKL--LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 266 ~~C~IC~~~~~~~--~~l--~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
..|+||.++.... -.+ |||+.-|..|+..-... +..||.||++...
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~----~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDG----DGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhccccc----CCCCCccCCcccc
Confidence 6799999988433 223 68888888888776665 6899999966543
No 123
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=64.11 E-value=13 Score=44.16 Aligned_cols=37 Identities=35% Similarity=0.542 Sum_probs=30.5
Q ss_pred HHHHHHHhhCCCCChHHHHHHhhccC-chhHHHHhhhc
Q 010130 480 AMAETVREVLPHMPEDLIFQDLQRTN-SATITVNNLLQ 516 (517)
Q Consensus 480 ~~~~~v~~~~~~~~~~~i~~~~~~~~-~~~~t~~~~~~ 516 (517)
..+.+++.||---..+||.++|+||+ .|.-.|||+|-
T Consensus 191 ELInnaQqVLQGKSRdVIIRELQRTgLdVNeAVNNLLS 228 (3015)
T KOG0943|consen 191 ELINNAQQVLQGKSRDVIIRELQRTGLDVNEAVNNLLS 228 (3015)
T ss_pred HHHHHHHHHHhCCchhHHHHHHHHhCCcHHHHHHhhhc
Confidence 34566667777778899999999998 79999999984
No 124
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=62.61 E-value=3.7 Score=41.77 Aligned_cols=49 Identities=22% Similarity=0.527 Sum_probs=37.0
Q ss_pred CCCCccccccccc----ccccccc-----CccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 265 DDECAICREPMAK----AKKLLCN-----HLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 265 ~~~C~IC~~~~~~----~~~l~C~-----H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
+..|-||.++... +...||. +..|..|+..|+.... ...|..|......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~--~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKG--NITCEICKSFFIN 135 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhcccc--Ceeeeccccccee
Confidence 4679999997654 3456776 6679999999998432 6899999886543
No 125
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.63 E-value=5.2 Score=39.14 Aligned_cols=33 Identities=15% Similarity=0.242 Sum_probs=30.1
Q ss_pred CCCccccccccccccccccCccchhhHHHHHHh
Q 010130 266 DECAICREPMAKAKKLLCNHLFHLACLRSWLDQ 298 (517)
Q Consensus 266 ~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~ 298 (517)
+.|+.|+.+..+|+..|=||+|++.||.+.+-.
T Consensus 44 dcCsLtLqPc~dPvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 44 DCCSLTLQPCRDPVITPDGYLFDREAILEYILA 76 (303)
T ss_pred ceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence 479999999999999999999999999888654
No 126
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=60.48 E-value=0.97 Score=35.61 Aligned_cols=40 Identities=25% Similarity=0.634 Sum_probs=23.2
Q ss_pred CCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCc
Q 010130 266 DECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 314 (517)
Q Consensus 266 ~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 314 (517)
..|+.|..+++... +|..|..|-..... ...||.|..++.
T Consensus 2 ~~CP~C~~~L~~~~----~~~~C~~C~~~~~~-----~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG----GHYHCEACQKDYKK-----EAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET----TEEEETTT--EEEE-----EEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC----CEEECcccccccee-----cccCCCcccHHH
Confidence 47999999876332 78888888765433 379999998873
No 127
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=58.93 E-value=6.3 Score=44.40 Aligned_cols=38 Identities=24% Similarity=0.577 Sum_probs=27.6
Q ss_pred CCccccccccccccc--cccCccchhhHHHHHHhCCCCCCCCCc
Q 010130 267 ECAICREPMAKAKKL--LCNHLFHLACLRSWLDQGLNEMYSCPT 308 (517)
Q Consensus 267 ~C~IC~~~~~~~~~l--~C~H~Fh~~Cl~~wl~~~~~~~~~CP~ 308 (517)
.|.+|-..+...... -|||.-|.+|+++|+.. ...||.
T Consensus 781 ~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~~----~s~ca~ 820 (839)
T KOG0269|consen 781 KCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFFK----ASPCAK 820 (839)
T ss_pred CceeecceeeeeEeecccccccccHHHHHHHHhc----CCCCcc
Confidence 577776554432222 59999999999999988 567766
No 128
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.92 E-value=6.4 Score=39.26 Aligned_cols=43 Identities=26% Similarity=0.587 Sum_probs=32.9
Q ss_pred CCCccccccccccccccc----cCccchhhHHHHHHhCC-CCCCCCCc
Q 010130 266 DECAICREPMAKAKKLLC----NHLFHLACLRSWLDQGL-NEMYSCPT 308 (517)
Q Consensus 266 ~~C~IC~~~~~~~~~l~C----~H~Fh~~Cl~~wl~~~~-~~~~~CP~ 308 (517)
..|.+|.|.+++.....| .|-||..|-++-++++. .....||.
T Consensus 269 LcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPS 316 (352)
T KOG3579|consen 269 LCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPS 316 (352)
T ss_pred eeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCC
Confidence 579999999999887777 59999999999887642 22344554
No 129
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.93 E-value=6.3 Score=42.56 Aligned_cols=36 Identities=31% Similarity=0.560 Sum_probs=31.1
Q ss_pred CCCCCccccccccc-cccccccCccchhhHHHHHHhC
Q 010130 264 YDDECAICREPMAK-AKKLLCNHLFHLACLRSWLDQG 299 (517)
Q Consensus 264 ~~~~C~IC~~~~~~-~~~l~C~H~Fh~~Cl~~wl~~~ 299 (517)
.+..|-||.+.... ...+.|||.||..|....+.+.
T Consensus 69 ~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~k 105 (444)
T KOG1815|consen 69 GDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTK 105 (444)
T ss_pred ccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhhe
Confidence 45689999999885 6778999999999999988774
No 130
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=55.36 E-value=1.5 Score=31.96 Aligned_cols=44 Identities=23% Similarity=0.626 Sum_probs=28.5
Q ss_pred Cccccccccccccc---cccCccchhhHHHHHHh--CCCCCCCCCcccc
Q 010130 268 CAICREPMAKAKKL---LCNHLFHLACLRSWLDQ--GLNEMYSCPTCRK 311 (517)
Q Consensus 268 C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~--~~~~~~~CP~CR~ 311 (517)
|.||...-.+...+ .|+..||..|+..=... .......||.|+.
T Consensus 2 C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 2 CPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp BTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred CcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 88898844444444 68899999998643321 1111588998864
No 131
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=52.77 E-value=13 Score=37.70 Aligned_cols=52 Identities=23% Similarity=0.475 Sum_probs=35.9
Q ss_pred CCCCCcccccccc--------------c---c--ccccccCccchhhHHHHHHhCCCC-----CCCCCccccCCcC
Q 010130 264 YDDECAICREPMA--------------K---A--KKLLCNHLFHLACLRSWLDQGLNE-----MYSCPTCRKPLFV 315 (517)
Q Consensus 264 ~~~~C~IC~~~~~--------------~---~--~~l~C~H~Fh~~Cl~~wl~~~~~~-----~~~CP~CR~~~~~ 315 (517)
.+.+|++|+..-. + | ..-||||.--.+-..-|-+...+. +..||.|-..+.-
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 3578999997532 1 1 123999998888888887764332 5789999877643
No 132
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=52.06 E-value=4.9 Score=42.00 Aligned_cols=48 Identities=21% Similarity=0.436 Sum_probs=0.0
Q ss_pred cCCCCCcccccccccc--------------ccccccCccchhhHHHHHHhCC--CCCCCCCccccCC
Q 010130 263 AYDDECAICREPMAKA--------------KKLLCNHLFHLACLRSWLDQGL--NEMYSCPTCRKPL 313 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~--------------~~l~C~H~Fh~~Cl~~wl~~~~--~~~~~CP~CR~~~ 313 (517)
.....|++=+..+.-| +-+.|||++-. ..|-.... ....+||+||..=
T Consensus 275 a~rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~---h~Wg~~~~~~~~~r~CPlCr~~g 338 (416)
T PF04710_consen 275 AGRPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGY---HNWGQDSDRDPRSRTCPLCRQVG 338 (416)
T ss_dssp -------------------------------------------------------------------
T ss_pred hcCCCCCcCCCccccccccccccccccCceeeccccceeee---cccccccccccccccCCCccccC
Confidence 3445677766655322 33689998655 35643321 1258999999753
No 133
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=50.07 E-value=8.9 Score=38.85 Aligned_cols=44 Identities=23% Similarity=0.495 Sum_probs=33.7
Q ss_pred CCCcccccccc---ccccccccCccchhhHHHHHHhCCCCCCCCCccc
Q 010130 266 DECAICREPMA---KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCR 310 (517)
Q Consensus 266 ~~C~IC~~~~~---~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR 310 (517)
..||+-.+.-. .|+.+.|||+.-..-++..-+++.. ...||.|-
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~-~FKCPYCP 383 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVL-SFKCPYCP 383 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcE-EeeCCCCC
Confidence 46888666543 4688999999999999886666533 58999994
No 134
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=48.91 E-value=6.4 Score=39.93 Aligned_cols=44 Identities=20% Similarity=0.384 Sum_probs=20.8
Q ss_pred CCCCcccccccccccccc-----ccCccchhhHHHHHHhCCCCCCCCCccccC
Q 010130 265 DDECAICREPMAKAKKLL-----CNHLFHLACLRSWLDQGLNEMYSCPTCRKP 312 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~-----C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 312 (517)
...|+||-..-.-.+... -.|.+|.-|-..|--. ...||.|-..
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~----R~~Cp~Cg~~ 220 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFV----RIKCPYCGNT 220 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE------TTS-TTT---
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeec----CCCCcCCCCC
Confidence 468999988754322111 2477788899999766 5899999653
No 135
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.77 E-value=15 Score=36.17 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=35.6
Q ss_pred CCCCCcccccccccc----ccccccCccchhhHHHHHHhCCCCCCCCCccccCCcCCC
Q 010130 264 YDDECAICREPMAKA----KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 317 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~----~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~~ 317 (517)
....|+|---+|... ...+|||+|-...+.+-- ...|++|.++....+
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik------as~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK------ASVCHVCGAAYQEDD 161 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhh------hccccccCCcccccC
Confidence 345699887777654 345999999999887643 369999999876543
No 136
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=43.97 E-value=15 Score=24.24 Aligned_cols=35 Identities=34% Similarity=0.883 Sum_probs=24.3
Q ss_pred CCcccccccccc-ccc-cccCccchhhHHHHHHhCCCCCCCCCccccCC
Q 010130 267 ECAICREPMAKA-KKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 313 (517)
Q Consensus 267 ~C~IC~~~~~~~-~~l-~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~ 313 (517)
.|..|.+.+... ..+ .=+..||..| ..|..|..++
T Consensus 1 ~C~~C~~~i~~~~~~~~~~~~~~H~~C------------f~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGELVLRALGKVWHPEC------------FKCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCcEEEEeCCccccccC------------CCCcccCCcC
Confidence 377888877654 222 3468899888 5788887765
No 137
>PLN02400 cellulose synthase
Probab=43.32 E-value=1e+02 Score=36.79 Aligned_cols=47 Identities=17% Similarity=0.499 Sum_probs=31.5
Q ss_pred CCCCccccccccccc----cc---cccCccchhhHHHHHHhCCCCCCCCCccccCCc
Q 010130 265 DDECAICREPMAKAK----KL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 314 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~----~l---~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 314 (517)
...|.||-|+..... -. .|+---|+.|..- ++ ...++.||.|+....
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEY--ER-keGnq~CPQCkTrYk 89 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEY--ER-KDGTQCCPQCKTRYR 89 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhhe--ec-ccCCccCcccCCccc
Confidence 458999999975321 12 4666689999842 22 123699999998764
No 138
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=42.32 E-value=12 Score=37.84 Aligned_cols=49 Identities=22% Similarity=0.455 Sum_probs=29.5
Q ss_pred hhcCCCCCcccccccccc--------------ccccccCccchhhHHHHHHhC--CCCCCCCCccccC
Q 010130 261 LRAYDDECAICREPMAKA--------------KKLLCNHLFHLACLRSWLDQG--LNEMYSCPTCRKP 312 (517)
Q Consensus 261 l~~~~~~C~IC~~~~~~~--------------~~l~C~H~Fh~~Cl~~wl~~~--~~~~~~CP~CR~~ 312 (517)
+......|++=+..+.-| +-|.|||+-.. ..|=.+. .+....||+||..
T Consensus 286 iNA~RPQCPVglnTL~~P~~~~~~~~~~~QP~vYl~CGHV~G~---H~WG~~e~~g~~~r~CPmC~~~ 350 (429)
T KOG3842|consen 286 INAARPQCPVGLNTLAFPSKRRKRVVDEKQPWVYLNCGHVHGY---HNWGVRENTGQRERECPMCRVV 350 (429)
T ss_pred HhccCCCCCcccceeecccccccccccccCCeEEEeccccccc---cccccccccCcccCcCCeeeee
Confidence 334456799888877533 23689986322 2353321 2225799999864
No 139
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=40.77 E-value=20 Score=26.41 Aligned_cols=37 Identities=32% Similarity=0.849 Sum_probs=28.3
Q ss_pred Cccccccccccccc--cccCccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 268 CAICREPMAKAKKL--LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 268 C~IC~~~~~~~~~l--~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
|.-|.+.+...... .-|..||..| ..|-.|++++...
T Consensus 1 C~~C~~~I~~~~~~~~~~~~~~H~~C------------f~C~~C~~~l~~~ 39 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKAMGKFWHPEC------------FKCSKCGKPLNDG 39 (58)
T ss_dssp BTTTSSBESSSSEEEEETTEEEETTT------------SBETTTTCBTTTS
T ss_pred CCCCCCCccCcEEEEEeCCcEEEccc------------cccCCCCCccCCC
Confidence 67788887755443 7889999988 5899999988654
No 140
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=40.48 E-value=16 Score=28.42 Aligned_cols=13 Identities=31% Similarity=0.764 Sum_probs=9.6
Q ss_pred ccchhhHHHHHHh
Q 010130 286 LFHLACLRSWLDQ 298 (517)
Q Consensus 286 ~Fh~~Cl~~wl~~ 298 (517)
-||+.||..|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999975
No 141
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.48 E-value=12 Score=37.76 Aligned_cols=46 Identities=28% Similarity=0.621 Sum_probs=39.3
Q ss_pred CCCCCccccccccccccc-cccCccchhhHHHHHHhCCCCCCCCCccccCC
Q 010130 264 YDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 313 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~l-~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~ 313 (517)
..+.|-||...+.-+.+. .|.|.|+..|...|.+. ...||.||...
T Consensus 104 ~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~----~~~~~d~~~~~ 150 (324)
T KOG0824|consen 104 DHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAM----GNDCPDCRGKI 150 (324)
T ss_pred CccceeeeeeeEEecccccCceeeeeecCCchhhhh----hhccchhhcCc
Confidence 467899999998877665 49999999999999998 58999998865
No 142
>PLN02189 cellulose synthase
Probab=38.18 E-value=36 Score=40.31 Aligned_cols=47 Identities=17% Similarity=0.450 Sum_probs=32.1
Q ss_pred CCCCcccccccccc---c-cc---cccCccchhhHHHHHHhCCCCCCCCCccccCCc
Q 010130 265 DDECAICREPMAKA---K-KL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 314 (517)
Q Consensus 265 ~~~C~IC~~~~~~~---~-~l---~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 314 (517)
...|.||-++.... . .. .|+---|..|..-=-+. +++.||.|+....
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~e---g~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERRE---GTQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhc---CCccCcccCCchh
Confidence 45899999997532 1 12 46666899998432222 2799999998764
No 143
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=37.86 E-value=19 Score=22.73 Aligned_cols=21 Identities=24% Similarity=0.610 Sum_probs=10.1
Q ss_pred CCccccccccccccc-c-ccCcc
Q 010130 267 ECAICREPMAKAKKL-L-CNHLF 287 (517)
Q Consensus 267 ~C~IC~~~~~~~~~l-~-C~H~F 287 (517)
.|+-|........+. | |||.|
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 466666555433221 2 56555
No 144
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=37.18 E-value=84 Score=30.12 Aligned_cols=39 Identities=31% Similarity=0.740 Sum_probs=26.7
Q ss_pred CCCCCcccccc-----ccccc---cccccCccchhhHHHHHHhCCCCCCCCCcccc
Q 010130 264 YDDECAICREP-----MAKAK---KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRK 311 (517)
Q Consensus 264 ~~~~C~IC~~~-----~~~~~---~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 311 (517)
.+..|.+|-++ |+... --.|+-.||..|..+ ..||-|.+
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~---------~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK---------KSCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC---------CCCCCcHh
Confidence 45689999864 12211 126999999999752 47999954
No 145
>PF07069 PRRSV_2b: Porcine reproductive and respiratory syndrome virus 2b ; InterPro: IPR009775 This family consists of several Porcine reproductive and respiratory syndrome virus (PRRSV) ORF2b proteins. The function of this family is unknown however it is known that large amounts of 2b protein are present in the virion and it is thought that this protein may be an integral component of the virion [].
Probab=36.50 E-value=1.9e+02 Score=22.08 Aligned_cols=51 Identities=22% Similarity=0.354 Sum_probs=22.1
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhhHHHHHHHHHHHHHHHHH
Q 010130 175 SLLEWKGILIRNFGFFLDMATLLMALGHYIHIWWLRGMAFHLVDAILFLNIRALLSA 231 (517)
Q Consensus 175 ~~we~kg~~i~~~~f~~dl~~~~~~l~~~~~~~~~~g~~~~l~~~vl~~~l~~~~~~ 231 (517)
+.|+.-|+++ .+-+.+++.-++++..|+.++ +.+.+....+...+|...+.
T Consensus 6 slf~kigqlf--vdafteflvsivdiiiflail----fgftiagwlvvfcirlv~sa 56 (73)
T PF07069_consen 6 SLFNKIGQLF--VDAFTEFLVSIVDIIIFLAIL----FGFTIAGWLVVFCIRLVCSA 56 (73)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHH
Confidence 3566556543 223333333344455555544 22334333334455544433
No 146
>PLN02436 cellulose synthase A
Probab=35.53 E-value=47 Score=39.50 Aligned_cols=47 Identities=17% Similarity=0.447 Sum_probs=31.9
Q ss_pred CCCCccccccccc---cc-cc---cccCccchhhHHHHHHhCCCCCCCCCccccCCc
Q 010130 265 DDECAICREPMAK---AK-KL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 314 (517)
Q Consensus 265 ~~~C~IC~~~~~~---~~-~l---~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 314 (517)
...|.||-++... +. -. .|+---|..|..-=-+. +++.||.|+....
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~e---g~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERRE---GNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhc---CCccCcccCCchh
Confidence 4589999999743 21 12 46666899998432222 2699999998764
No 147
>KOG4501 consensus Transcription coactivator complex, P100 component [Transcription]
Probab=34.96 E-value=71 Score=34.99 Aligned_cols=41 Identities=17% Similarity=0.258 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhhCCCCChHHHHHHhhccCchhHHHHhhhc
Q 010130 476 ANILAMAETVREVLPHMPEDLIFQDLQRTNSATITVNNLLQ 516 (517)
Q Consensus 476 ~~l~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~t~~~~~~ 516 (517)
+++++.|.+|.+++|++-...|..=|.+-..++--|+||||
T Consensus 430 ~d~ds~~saV~~~lPdlg~gfi~~~l~~y~d~eqvI~~ild 470 (707)
T KOG4501|consen 430 SDTDSSASAVYTELPDLGPGFIASSLSSYTDVEQVIRKILD 470 (707)
T ss_pred cchhhHHHHHHHhCccccchHHHHHHHhhcCHHHHHHHhhc
Confidence 47888999999999999999999999988899999999997
No 148
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=34.66 E-value=16 Score=33.32 Aligned_cols=28 Identities=36% Similarity=0.653 Sum_probs=22.4
Q ss_pred cchhhHHHHHHhCCCCCCCCCccccCCc
Q 010130 287 FHLACLRSWLDQGLNEMYSCPTCRKPLF 314 (517)
Q Consensus 287 Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 314 (517)
||..||++=|..-+.....||.|+..-.
T Consensus 2 ~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~ 29 (148)
T cd04718 2 FHLCCLRPPLKEVPEGDWICPFCEVEKS 29 (148)
T ss_pred cccccCCCCCCCCCCCCcCCCCCcCCCC
Confidence 7999999888776656799999987643
No 149
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=34.62 E-value=30 Score=25.94 Aligned_cols=30 Identities=17% Similarity=0.473 Sum_probs=22.5
Q ss_pred CCCCCcccccccc--cccc--ccccCccchhhHH
Q 010130 264 YDDECAICREPMA--KAKK--LLCNHLFHLACLR 293 (517)
Q Consensus 264 ~~~~C~IC~~~~~--~~~~--l~C~H~Fh~~Cl~ 293 (517)
....|++|-+.+. +... -.||-.+|+.|..
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 3567999999994 3322 3699999999953
No 150
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=34.53 E-value=51 Score=39.24 Aligned_cols=47 Identities=21% Similarity=0.489 Sum_probs=31.5
Q ss_pred CCCCccccccccccc----cc---cccCccchhhHHHHHHhCCCCCCCCCccccCCc
Q 010130 265 DDECAICREPMAKAK----KL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 314 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~----~l---~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 314 (517)
...|.||-++..... .. .|+---|+.|..-=-+. .++.||.|+....
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~e---G~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKD---GNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhc---CCccCCccCCchh
Confidence 458999999875321 12 46666899998421122 2699999998764
No 151
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=34.39 E-value=25 Score=36.00 Aligned_cols=43 Identities=19% Similarity=0.396 Sum_probs=29.0
Q ss_pred CCCCccccccccccccc----cc--cCccchhhHHHHHHhCCCCCCCCCcccc
Q 010130 265 DDECAICREPMAKAKKL----LC--NHLFHLACLRSWLDQGLNEMYSCPTCRK 311 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l----~C--~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 311 (517)
...|+||-..-...+.. .= .|..|.-|-..|--. ...||.|-.
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~----R~~C~~Cg~ 232 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYV----RVKCSHCEE 232 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccccc----CccCCCCCC
Confidence 45899998875322111 11 266677788899776 589999965
No 152
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.68 E-value=21 Score=36.06 Aligned_cols=45 Identities=24% Similarity=0.480 Sum_probs=35.6
Q ss_pred CCCCccccccccc------ccccc--------ccCccchhhHHHHHHhCCCCCCCCCccccC
Q 010130 265 DDECAICREPMAK------AKKLL--------CNHLFHLACLRSWLDQGLNEMYSCPTCRKP 312 (517)
Q Consensus 265 ~~~C~IC~~~~~~------~~~l~--------C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 312 (517)
+..|.||...+.. |..+. |||..|..|+..-+.+. ...||.||..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~---~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQA---GIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHh---hhcCCcccce
Confidence 4579999988862 34455 99999999999988764 3689999875
No 153
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=32.63 E-value=23 Score=36.35 Aligned_cols=44 Identities=16% Similarity=0.397 Sum_probs=29.6
Q ss_pred CCCCCccccccccccc-cc--cc--cCccchhhHHHHHHhCCCCCCCCCcccc
Q 010130 264 YDDECAICREPMAKAK-KL--LC--NHLFHLACLRSWLDQGLNEMYSCPTCRK 311 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~-~l--~C--~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 311 (517)
....|++|-..-...+ ++ .= .|..|.-|-..|--. ...||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~----R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVV----RVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCccccc----CccCCCCCC
Confidence 4578999988743221 11 11 256677788899776 589999965
No 154
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=32.51 E-value=43 Score=28.67 Aligned_cols=47 Identities=28% Similarity=0.637 Sum_probs=30.2
Q ss_pred CCCCcccccccccc--------ccccc---cCccchhhHHHHHHhC-----CCCCCCCCcccc
Q 010130 265 DDECAICREPMAKA--------KKLLC---NHLFHLACLRSWLDQG-----LNEMYSCPTCRK 311 (517)
Q Consensus 265 ~~~C~IC~~~~~~~--------~~l~C---~H~Fh~~Cl~~wl~~~-----~~~~~~CP~CR~ 311 (517)
+..|-.|...-.+. +.-.| .=.||..||..++... ......||.||.
T Consensus 7 g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 7 GKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 44566666533221 22345 6679999999887653 123588999987
No 155
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=32.35 E-value=15 Score=40.81 Aligned_cols=24 Identities=38% Similarity=0.933 Sum_probs=18.3
Q ss_pred ccccCccchhhHHHHHHhCCCCCCCCCcccc
Q 010130 281 LLCNHLFHLACLRSWLDQGLNEMYSCPTCRK 311 (517)
Q Consensus 281 l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 311 (517)
..|+++||..|+.. . +..||.|-+
T Consensus 535 ~~C~avfH~~C~~r---~----s~~CPrC~R 558 (580)
T KOG1829|consen 535 STCLAVFHKKCLRR---K----SPCCPRCER 558 (580)
T ss_pred HHHHHHHHHHHHhc---c----CCCCCchHH
Confidence 47999999999753 2 355999944
No 156
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=31.95 E-value=52 Score=26.53 Aligned_cols=47 Identities=19% Similarity=0.453 Sum_probs=20.0
Q ss_pred CCCCccccccccc---ccc----ccccCccchhhHHHHHHhCCCCCCCCCccccCCc
Q 010130 265 DDECAICREPMAK---AKK----LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 314 (517)
Q Consensus 265 ~~~C~IC~~~~~~---~~~----l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 314 (517)
...|.||-++... +.. -.|+---|+.|..-=.+.+ .+.||.|+.+..
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg---~q~CpqCkt~yk 62 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEG---NQVCPQCKTRYK 62 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS----SB-TTT--B--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcC---cccccccCCCcc
Confidence 4579999998742 211 2577778899986544443 689999997653
No 157
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=31.92 E-value=23 Score=35.22 Aligned_cols=48 Identities=31% Similarity=0.591 Sum_probs=33.7
Q ss_pred CCCcccccccccc-------ccccccCccchhhHHHHHHhC-----CCCCCCCCccccCC
Q 010130 266 DECAICREPMAKA-------KKLLCNHLFHLACLRSWLDQG-----LNEMYSCPTCRKPL 313 (517)
Q Consensus 266 ~~C~IC~~~~~~~-------~~l~C~H~Fh~~Cl~~wl~~~-----~~~~~~CP~CR~~~ 313 (517)
..|-+|.+++.+. ..-.|+-.+|..|+..-+... .+-...||.|++-+
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 5799999998432 223599999999998844332 12257899999854
No 158
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=31.66 E-value=68 Score=38.10 Aligned_cols=48 Identities=15% Similarity=0.417 Sum_probs=32.5
Q ss_pred CCCCCccccccccccc----cc---cccCccchhhHHHHHHhCCCCCCCCCccccCCc
Q 010130 264 YDDECAICREPMAKAK----KL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 314 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~----~l---~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 314 (517)
....|.||-++..... .. .|+---|..|..-=.+. +++.||.|+....
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~---g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSE---GNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhc---CCccCCccCCchh
Confidence 3457999999875321 12 46666899998432222 2689999998764
No 159
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=31.61 E-value=16 Score=38.42 Aligned_cols=50 Identities=24% Similarity=0.531 Sum_probs=0.0
Q ss_pred CCCCcccccccc--------------c---c--ccccccCccchhhHHHHHHhCCCC-----CCCCCccccCCc
Q 010130 265 DDECAICREPMA--------------K---A--KKLLCNHLFHLACLRSWLDQGLNE-----MYSCPTCRKPLF 314 (517)
Q Consensus 265 ~~~C~IC~~~~~--------------~---~--~~l~C~H~Fh~~Cl~~wl~~~~~~-----~~~CP~CR~~~~ 314 (517)
+.+|++|+..-. + | ..-||||.--.+..+-|-+...+. +..||.|-.++.
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 568999996531 1 1 123999998888999997764332 368999988775
No 160
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=31.29 E-value=46 Score=41.14 Aligned_cols=49 Identities=37% Similarity=0.691 Sum_probs=39.8
Q ss_pred CCCCccccccccccccc---cccCccchhhHHHHHHhCCCCCCCCCccccCC
Q 010130 265 DDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 313 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~ 313 (517)
...|.+|+....+-..+ .|.-.||..|++.-+..-+.....||-||..-
T Consensus 1108 ~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1108 NALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred hhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 45799999887765444 47788999999999988777789999998864
No 161
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=30.66 E-value=22 Score=27.43 Aligned_cols=31 Identities=16% Similarity=0.489 Sum_probs=16.3
Q ss_pred CCCCcccccccccccc----ccccCccchhhHHHH
Q 010130 265 DDECAICREPMAKAKK----LLCNHLFHLACLRSW 295 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~----l~C~H~Fh~~Cl~~w 295 (517)
...|.+|...|.--.+ -.||++||..|....
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 4689999999964322 279999999997543
No 162
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.92 E-value=23 Score=37.52 Aligned_cols=42 Identities=21% Similarity=0.505 Sum_probs=29.6
Q ss_pred CCCCCcccccccccc-----ccccccCccchhhHHHHHHhCCCCCCCCCcc
Q 010130 264 YDDECAICREPMAKA-----KKLLCNHLFHLACLRSWLDQGLNEMYSCPTC 309 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~-----~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~C 309 (517)
.-..|+.|.-.++.. ..=.|||-||..|...|... +..|..|
T Consensus 305 ~wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~----~~~~~~~ 351 (384)
T KOG1812|consen 305 RWRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTH----NGECYEC 351 (384)
T ss_pred hcCcCcccceeeeecCCcceEEeeccccchhhcCcchhhC----CccccCc
Confidence 346799998776432 22259999999999999887 3556444
No 163
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.03 E-value=45 Score=37.69 Aligned_cols=47 Identities=23% Similarity=0.470 Sum_probs=34.4
Q ss_pred CCccccccccccccccccC-ccchhhHHHHHHh--CCCCCCCCCccccCC
Q 010130 267 ECAICREPMAKAKKLLCNH-LFHLACLRSWLDQ--GLNEMYSCPTCRKPL 313 (517)
Q Consensus 267 ~C~IC~~~~~~~~~l~C~H-~Fh~~Cl~~wl~~--~~~~~~~CP~CR~~~ 313 (517)
.|+||-...+-...-.||| .-|..|....... +...+..||+||..+
T Consensus 2 ~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~ 51 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREV 51 (669)
T ss_pred CcceeecCccccccccccccccchhhhhhhhhhcccccccccCcccccce
Confidence 5999988877777778999 8899997655332 122357889999855
No 164
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=26.84 E-value=30 Score=38.22 Aligned_cols=31 Identities=32% Similarity=0.622 Sum_probs=23.7
Q ss_pred CCCCccccccccc-------------cccccccCccchhhHHHH
Q 010130 265 DDECAICREPMAK-------------AKKLLCNHLFHLACLRSW 295 (517)
Q Consensus 265 ~~~C~IC~~~~~~-------------~~~l~C~H~Fh~~Cl~~w 295 (517)
...|+||.|.|+. .+.+.=|-+||..|+..-
T Consensus 513 ~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 513 QASCPICQEKFEVVFDQEEDLWMYKDAVYLEFGRIFHSKCLSEK 556 (579)
T ss_pred ccCCcccccccceeecchhhheeecceeeeccCceeeccccchH
Confidence 4579999999863 344557999999998653
No 165
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=26.61 E-value=83 Score=27.31 Aligned_cols=45 Identities=22% Similarity=0.483 Sum_probs=27.4
Q ss_pred CCCCCcccccccccc-----ccccccCccchhhHHHHHHhCCCCCCCCCcccc
Q 010130 264 YDDECAICREPMAKA-----KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRK 311 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~-----~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 311 (517)
.+..|++|...|.-. .-..|+|.+|..|-.. ........|-+|.+
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~---~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY---SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE---TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc---CCCCCCEEChhhHH
Confidence 466899999876421 2237999999999644 21111357888865
No 166
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=25.91 E-value=5.7e+02 Score=29.48 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=16.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHH
Q 010130 84 ATPWTYFRVFSALLFVLAVDIF 105 (517)
Q Consensus 84 ~~~~~h~R~~~lL~~ll~~d~~ 105 (517)
.+...|+|++.+=++++++|++
T Consensus 25 ~~~~~~~~~~~~w~~~~~~d~~ 46 (697)
T PF09726_consen 25 GSTFLYVKFLLVWALVLLADFM 46 (697)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 3445688888888888888865
No 167
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=25.58 E-value=36 Score=38.46 Aligned_cols=44 Identities=23% Similarity=0.472 Sum_probs=27.6
Q ss_pred cCCCCCccccccccccc----------c---ccccCccchhhHHHHHHhCCCCCCCCCccccCCc
Q 010130 263 AYDDECAICREPMAKAK----------K---LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 314 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~~----------~---l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 314 (517)
.++..|+-|...|..++ . ..|.|.-|..=|. ....||.|...+.
T Consensus 1129 ~~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs--------~y~~CPLCHs~~~ 1185 (1189)
T KOG2041|consen 1129 PYDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEIS--------KYNCCPLCHSMES 1185 (1189)
T ss_pred ccCCCChhhcCcCceeeccCCccccceEEEcccccccccccccc--------ccccCccccChhh
Confidence 44667887877775331 1 2577766654442 2689999987653
No 168
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.10 E-value=1.4e+02 Score=33.79 Aligned_cols=38 Identities=24% Similarity=0.597 Sum_probs=27.1
Q ss_pred CCCcccccccc----ccccccccCccchhhHHHHHHhCCCCCCCCCccc
Q 010130 266 DECAICREPMA----KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCR 310 (517)
Q Consensus 266 ~~C~IC~~~~~----~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR 310 (517)
..|-+|...-. -+..+.|+-.||..| |++- .+.||+|-
T Consensus 655 r~C~vcq~pedse~~v~rt~~C~~~~C~~c---~~~~----~~~~~vC~ 696 (717)
T KOG3726|consen 655 RTCKVCQLPEDSETDVCRTTFCYTPYCVAC---SLDY----ASISEVCG 696 (717)
T ss_pred HHHHHhcCCcCccccccCccccCCcchHhh---hhhh----hccCcccC
Confidence 46888876432 245678999998888 5555 46799994
No 169
>PRK12495 hypothetical protein; Provisional
Probab=23.97 E-value=6.8e+02 Score=24.42 Aligned_cols=13 Identities=38% Similarity=0.894 Sum_probs=9.6
Q ss_pred CCCCCccccCCcC
Q 010130 303 MYSCPTCRKPLFV 315 (517)
Q Consensus 303 ~~~CP~CR~~~~~ 315 (517)
...||.|...+..
T Consensus 58 ~~~Cp~CQ~~~~~ 70 (226)
T PRK12495 58 QEFCPTCQQPVTE 70 (226)
T ss_pred eeECCCCCCcccc
Confidence 4679999876644
No 170
>PF04905 NCD2: NAB conserved region 2 (NCD2); InterPro: IPR006989 Nab1 and Nab2 are co-repressors that specifically interact with and repress transcription mediated by the three members of the NGFI-A (Egr-1, Krox24, zif/268) family of eukaryotic (metazoa) transcription factors []. This entry represents a NAB domain near the C terminus of the protein. It is necessary for transcriptional repression by the Nab proteins []. It is also required for transcription activation by Nab proteins at Nab-activated promoters [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2YUF_A.
Probab=22.82 E-value=1.2e+02 Score=27.98 Aligned_cols=45 Identities=16% Similarity=0.268 Sum_probs=28.7
Q ss_pred hhhHHHHHHHHHHHhhCCCCChHHHHHHhhccCchhHHHHhhhcC
Q 010130 473 ENIANILAMAETVREVLPHMPEDLIFQDLQRTNSATITVNNLLQM 517 (517)
Q Consensus 473 ~~~~~l~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~t~~~~~~~ 517 (517)
..+..|..-++++...+|+....-+..-+...+...=++..|++|
T Consensus 38 ~~v~~l~e~~erl~k~lP~~~~~e~~~~~~~kKK~~k~l~~v~~M 82 (164)
T PF04905_consen 38 EQVQKLAECVERLIKTLPRFDLSEVPKLLNTKKKLAKELEHVLEM 82 (164)
T ss_dssp HHHHHHHHHHHHHHHHS----HHHHHHHHHH-SHHHHHHTHHHHS
T ss_pred HHHHHHHHHHHHHHHhCCCCchhhhHHHHHhhhHHHHHHHHHHcC
Confidence 345667777888888999988777777666666666677777766
No 171
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=22.50 E-value=45 Score=33.95 Aligned_cols=44 Identities=7% Similarity=-0.209 Sum_probs=33.4
Q ss_pred CCCCccccccccccccccccCc-cchhhHHHHHHhCCCCCCCCCccccCCc
Q 010130 265 DDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLF 314 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~C~H~-Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 314 (517)
..+|-.|-+........+|||. ||.+|-. +.. ..+||+|-....
T Consensus 343 ~~~~~~~~~~~~st~~~~~~~n~~~~~~a~--~s~----~~~~~~c~~~~~ 387 (394)
T KOG2113|consen 343 SLKGTSAGFGLLSTIWSGGNMNLSPGSLAS--ASA----SPTSSTCDHNDH 387 (394)
T ss_pred hcccccccCceeeeEeecCCcccChhhhhh--ccc----CCccccccccce
Confidence 4579999888777777899986 8888876 222 589999976543
No 172
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.01 E-value=42 Score=27.77 Aligned_cols=12 Identities=33% Similarity=0.971 Sum_probs=11.2
Q ss_pred cchhhHHHHHHh
Q 010130 287 FHLACLRSWLDQ 298 (517)
Q Consensus 287 Fh~~Cl~~wl~~ 298 (517)
||+.|+..|+..
T Consensus 43 FCRNCLs~Wy~e 54 (104)
T COG3492 43 FCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHH
Confidence 999999999976
No 173
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=21.91 E-value=50 Score=21.83 Aligned_cols=10 Identities=40% Similarity=1.248 Sum_probs=7.8
Q ss_pred CCCCCccccC
Q 010130 303 MYSCPTCRKP 312 (517)
Q Consensus 303 ~~~CP~CR~~ 312 (517)
...||.|..+
T Consensus 17 ~~~CP~Cg~~ 26 (33)
T cd00350 17 PWVCPVCGAP 26 (33)
T ss_pred CCcCcCCCCc
Confidence 4799999763
No 174
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.42 E-value=50 Score=26.15 Aligned_cols=43 Identities=23% Similarity=0.618 Sum_probs=28.4
Q ss_pred CCcccccccccc--cccccc--CccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 267 ECAICREPMAKA--KKLLCN--HLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 267 ~C~IC~~~~~~~--~~l~C~--H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
.|--|-.++... ..+-|. |.||..|...-+. ..||.|-..+..
T Consensus 7 nCECCDrDLpp~s~dA~ICtfEcTFCadCae~~l~------g~CPnCGGelv~ 53 (84)
T COG3813 7 NCECCDRDLPPDSTDARICTFECTFCADCAENRLH------GLCPNCGGELVA 53 (84)
T ss_pred CCcccCCCCCCCCCceeEEEEeeehhHhHHHHhhc------CcCCCCCchhhc
Confidence 465566555321 223343 8899999987665 589999877654
No 175
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=20.58 E-value=55 Score=27.23 Aligned_cols=38 Identities=18% Similarity=0.538 Sum_probs=28.6
Q ss_pred CCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 265 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
...|-||......+ ||.||..|-.+ ...|.+|-..+..
T Consensus 44 ~~~C~~CK~~v~q~-----g~~YCq~CAYk--------kGiCamCGKki~d 81 (90)
T PF10235_consen 44 SSKCKICKTKVHQP-----GAKYCQTCAYK--------KGICAMCGKKILD 81 (90)
T ss_pred CccccccccccccC-----CCccChhhhcc--------cCcccccCCeecc
Confidence 45799998765543 78899999643 5799999887743
No 176
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=20.47 E-value=73 Score=30.99 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=11.8
Q ss_pred CCCCCccccCCcCCCCc
Q 010130 303 MYSCPTCRKPLFVGRRE 319 (517)
Q Consensus 303 ~~~CP~CR~~~~~~~~~ 319 (517)
...||+|++.--..+|.
T Consensus 263 APiCPlCKaKsRSrNPK 279 (286)
T KOG4451|consen 263 APICPLCKAKSRSRNPK 279 (286)
T ss_pred CCCCcchhhccccCCCC
Confidence 48999999875444443
Done!