Query 010130
Match_columns 517
No_of_seqs 505 out of 2335
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 20:33:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010130.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010130hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ejs_A Autocrine motility fact 99.5 6.8E-15 2.3E-19 109.2 4.6 48 469-516 4-51 (58)
2 2ekf_A Ancient ubiquitous prot 99.5 7.9E-15 2.7E-19 109.7 4.6 47 470-516 5-51 (61)
3 4g3o_A E3 ubiquitin-protein li 99.4 1.7E-13 5.8E-18 101.0 5.0 42 475-516 14-55 (58)
4 1iym_A EL5; ring-H2 finger, ub 99.3 1.7E-12 5.9E-17 96.6 3.2 47 264-314 4-54 (55)
5 1x4j_A Ring finger protein 38; 99.3 1.5E-12 5.1E-17 103.6 3.0 49 263-315 21-72 (75)
6 2kiz_A E3 ubiquitin-protein li 99.3 3.6E-12 1.2E-16 99.5 4.8 50 263-316 12-64 (69)
7 2l0b_A E3 ubiquitin-protein li 99.2 2.1E-12 7.2E-17 106.9 2.9 48 264-315 39-89 (91)
8 2djb_A Polycomb group ring fin 99.2 5.8E-12 2E-16 99.4 5.1 51 264-318 14-65 (72)
9 2ecm_A Ring finger and CHY zin 99.2 4.2E-12 1.4E-16 94.5 4.0 47 264-314 4-54 (55)
10 3ng2_A RNF4, snurf, ring finge 99.2 3.7E-12 1.2E-16 99.9 3.7 49 264-316 9-64 (71)
11 2ea6_A Ring finger protein 4; 99.2 3.5E-12 1.2E-16 99.3 3.6 49 263-315 13-68 (69)
12 2ep4_A Ring finger protein 24; 99.2 6.8E-12 2.3E-16 99.4 5.2 50 263-316 13-65 (74)
13 2ect_A Ring finger protein 126 99.2 8.2E-12 2.8E-16 99.9 5.5 51 263-317 13-66 (78)
14 1chc_A Equine herpes virus-1 r 99.2 7.2E-12 2.5E-16 97.5 4.9 49 263-315 3-52 (68)
15 4ayc_A E3 ubiquitin-protein li 99.2 4.9E-12 1.7E-16 112.9 4.1 48 264-315 52-99 (138)
16 2ecl_A Ring-box protein 2; RNF 99.2 4.4E-12 1.5E-16 102.6 3.2 48 264-315 14-76 (81)
17 2d8t_A Dactylidin, ring finger 99.2 2.4E-12 8.3E-17 101.3 1.1 49 263-315 13-61 (71)
18 2xeu_A Ring finger protein 4; 99.2 6.1E-12 2.1E-16 96.4 3.3 49 264-316 2-57 (64)
19 2ecy_A TNF receptor-associated 99.2 1.2E-11 4.2E-16 95.7 4.1 50 264-316 14-63 (66)
20 1v87_A Deltex protein 2; ring- 99.2 1.2E-11 4E-16 106.5 4.3 53 264-316 24-95 (114)
21 2yur_A Retinoblastoma-binding 99.2 2.1E-11 7E-16 96.8 4.9 51 264-316 14-65 (74)
22 2csy_A Zinc finger protein 183 99.2 1.5E-11 5.2E-16 99.2 3.8 48 263-314 13-60 (81)
23 2ysl_A Tripartite motif-contai 99.1 1.8E-11 6.1E-16 96.5 3.7 53 263-316 18-70 (73)
24 1t1h_A Gspef-atpub14, armadill 99.1 2.1E-11 7.2E-16 97.5 3.9 50 264-316 7-56 (78)
25 3dpl_R Ring-box protein 1; ubi 99.1 1.8E-11 6.3E-16 104.0 3.8 48 264-315 36-101 (106)
26 2ecn_A Ring finger protein 141 99.1 1.1E-11 3.9E-16 97.0 1.4 48 264-316 14-61 (70)
27 2ct2_A Tripartite motif protei 99.1 3.6E-11 1.2E-15 98.2 4.2 53 263-316 13-69 (88)
28 3fl2_A E3 ubiquitin-protein li 99.1 6E-11 2.1E-15 103.7 4.8 49 264-315 51-99 (124)
29 3lrq_A E3 ubiquitin-protein li 99.1 3.3E-11 1.1E-15 101.4 2.9 49 265-316 22-71 (100)
30 3ztg_A E3 ubiquitin-protein li 99.1 6.2E-11 2.1E-15 97.9 3.9 50 263-314 11-61 (92)
31 2ysj_A Tripartite motif-contai 99.1 9.2E-11 3.2E-15 89.8 4.1 46 263-309 18-63 (63)
32 1g25_A CDK-activating kinase a 99.1 9.2E-11 3.1E-15 90.4 4.1 49 265-316 3-56 (65)
33 2ecv_A Tripartite motif-contai 99.0 1.8E-10 6.1E-15 93.2 5.8 54 263-316 17-72 (85)
34 2ckl_A Polycomb group ring fin 99.0 9E-11 3.1E-15 100.0 3.6 50 263-316 13-63 (108)
35 2ecw_A Tripartite motif-contai 99.0 1.5E-10 5.1E-15 93.7 4.7 54 263-316 17-72 (85)
36 2y43_A E3 ubiquitin-protein li 99.0 9.5E-11 3.3E-15 98.2 2.8 48 264-315 21-69 (99)
37 2egp_A Tripartite motif-contai 99.0 5.7E-11 1.9E-15 95.0 1.1 54 263-316 10-66 (79)
38 2ecj_A Tripartite motif-contai 99.0 1.5E-10 5.2E-15 86.8 3.3 46 263-309 13-58 (58)
39 4a0k_B E3 ubiquitin-protein li 99.0 5.4E-11 1.9E-15 102.6 0.2 48 264-315 47-112 (117)
40 1jm7_A BRCA1, breast cancer ty 99.0 4.1E-10 1.4E-14 96.3 5.0 51 265-316 21-71 (112)
41 1z6u_A NP95-like ring finger p 99.0 2.2E-10 7.5E-15 103.6 3.5 50 264-316 77-126 (150)
42 3l11_A E3 ubiquitin-protein li 98.9 5.7E-11 2E-15 102.4 -0.9 48 265-315 15-62 (115)
43 2kr4_A Ubiquitin conjugation f 98.9 3.6E-10 1.2E-14 92.2 3.6 48 264-315 13-60 (85)
44 4ap4_A E3 ubiquitin ligase RNF 98.9 2.9E-10 1E-14 99.8 3.1 50 264-317 6-62 (133)
45 2d8s_A Cellular modulator of i 98.9 6.1E-10 2.1E-14 89.7 4.6 52 263-316 13-71 (80)
46 1e4u_A Transcriptional repress 98.9 1.1E-09 3.7E-14 87.8 5.8 52 263-317 9-64 (78)
47 2kre_A Ubiquitin conjugation f 98.9 4.2E-10 1.4E-14 94.6 3.1 48 264-315 28-75 (100)
48 1rmd_A RAG1; V(D)J recombinati 98.9 2.7E-10 9.3E-15 98.2 2.0 50 264-316 22-71 (116)
49 2ckl_B Ubiquitin ligase protei 98.9 4.3E-10 1.5E-14 103.2 3.5 48 265-315 54-102 (165)
50 2c2l_A CHIP, carboxy terminus 98.9 1.6E-09 5.5E-14 107.1 7.7 49 264-315 207-255 (281)
51 1bor_A Transcription factor PM 98.9 4.7E-10 1.6E-14 84.0 2.8 46 264-316 5-50 (56)
52 3hct_A TNF receptor-associated 98.9 4.2E-10 1.4E-14 97.5 2.6 49 264-315 17-65 (118)
53 1wgm_A Ubiquitin conjugation f 98.9 7.3E-10 2.5E-14 92.8 3.5 48 264-315 21-69 (98)
54 2ct0_A Non-SMC element 1 homol 98.8 1.9E-09 6.4E-14 85.2 4.5 55 263-319 13-68 (74)
55 4ap4_A E3 ubiquitin ligase RNF 98.8 9.1E-10 3.1E-14 96.6 2.8 50 263-316 70-126 (133)
56 2vje_A E3 ubiquitin-protein li 98.8 1.2E-09 4E-14 84.2 3.1 47 264-314 7-56 (64)
57 2vje_B MDM4 protein; proto-onc 98.8 1.2E-09 4.1E-14 83.8 3.0 48 263-314 5-55 (63)
58 2y1n_A E3 ubiquitin-protein li 98.8 1.5E-09 5.2E-14 111.6 4.2 49 265-316 332-380 (389)
59 3knv_A TNF receptor-associated 98.8 7.7E-10 2.6E-14 98.9 1.3 50 263-315 29-78 (141)
60 1jm7_B BARD1, BRCA1-associated 98.7 2.7E-09 9.3E-14 92.2 2.7 46 264-315 21-67 (117)
61 2f42_A STIP1 homology and U-bo 98.7 4.4E-09 1.5E-13 97.3 3.6 49 264-315 105-153 (179)
62 4ic3_A E3 ubiquitin-protein li 98.7 2.5E-09 8.7E-14 84.7 0.3 43 265-315 24-67 (74)
63 2yu4_A E3 SUMO-protein ligase 98.7 7.9E-09 2.7E-13 85.8 2.9 51 264-314 6-62 (94)
64 2ea5_A Cell growth regulator w 98.6 2.2E-08 7.6E-13 77.9 4.4 47 262-316 12-59 (68)
65 3hcs_A TNF receptor-associated 98.6 1.2E-08 4E-13 93.9 2.6 49 264-315 17-65 (170)
66 2ecg_A Baculoviral IAP repeat- 98.6 3.4E-08 1.2E-12 78.2 4.2 43 265-315 25-68 (75)
67 3k1l_B Fancl; UBC, ring, RWD, 98.5 4.8E-08 1.6E-12 97.7 2.9 53 263-315 306-373 (381)
68 3htk_C E3 SUMO-protein ligase 98.4 1.2E-07 4E-12 92.1 3.9 51 264-316 180-233 (267)
69 1vyx_A ORF K3, K3RING; zinc-bi 98.3 2.4E-07 8.2E-12 70.1 3.5 49 264-314 5-58 (60)
70 2bay_A PRE-mRNA splicing facto 98.3 1.3E-07 4.6E-12 71.8 2.1 47 266-316 4-51 (61)
71 2yho_A E3 ubiquitin-protein li 98.3 1.4E-07 4.7E-12 75.6 1.7 44 265-316 18-62 (79)
72 3t6p_A Baculoviral IAP repeat- 98.2 1.9E-07 6.4E-12 95.4 1.1 44 264-315 294-338 (345)
73 1wim_A KIAA0161 protein; ring 98.2 9.1E-07 3.1E-11 73.1 3.4 48 265-312 5-61 (94)
74 3vk6_A E3 ubiquitin-protein li 97.8 1E-05 3.5E-10 66.5 3.3 46 267-315 3-49 (101)
75 3nw0_A Non-structural maintena 97.5 6.1E-05 2.1E-09 72.8 4.4 53 265-319 180-233 (238)
76 2dhy_A CUE domain-containing p 97.3 0.00024 8.2E-09 54.5 4.4 42 476-517 16-58 (67)
77 2di0_A Activating signal coint 96.3 0.0071 2.4E-07 46.6 5.6 41 476-516 11-52 (71)
78 2qho_B E3 ubiquitin-protein li 95.1 0.032 1.1E-06 39.1 4.7 37 480-516 11-48 (53)
79 1wgl_A TOLL-interacting protei 95.0 0.028 9.5E-07 41.9 4.5 40 478-517 9-49 (59)
80 1p3q_Q VPS9P, vacuolar protein 94.7 0.027 9.2E-07 41.0 3.7 42 476-517 10-52 (54)
81 2jun_A Midline-1; B-BOX, TRIM, 93.2 0.04 1.4E-06 45.3 2.5 31 265-295 3-36 (101)
82 1wil_A KIAA1045 protein; ring 92.8 0.07 2.4E-06 42.2 3.1 48 263-311 13-75 (89)
83 2lri_C Autoimmune regulator; Z 92.3 0.075 2.6E-06 40.4 2.7 47 263-312 10-59 (66)
84 2ko5_A Ring finger protein Z; 91.9 0.066 2.3E-06 43.2 2.0 46 265-316 28-74 (99)
85 1otr_A Protein CUE2; protein-p 90.8 0.24 8.2E-06 35.3 3.8 40 478-517 4-44 (49)
86 3m62_A Ubiquitin conjugation f 89.2 0.63 2.1E-05 52.8 7.5 48 265-316 891-939 (968)
87 1mm2_A MI2-beta; PHD, zinc fin 87.4 0.17 6E-06 37.7 1.1 48 263-313 7-57 (61)
88 2k16_A Transcription initiatio 86.5 0.079 2.7E-06 41.2 -1.3 51 264-314 17-70 (75)
89 1f62_A Transcription factor WS 86.1 0.27 9.3E-06 35.0 1.5 45 267-311 2-49 (51)
90 2l5u_A Chromodomain-helicase-D 84.8 0.26 9E-06 36.7 0.9 46 263-311 9-57 (61)
91 3u5n_A E3 ubiquitin-protein li 84.7 0.18 6.2E-06 47.2 -0.0 47 263-312 5-54 (207)
92 3o36_A Transcription intermedi 83.0 0.27 9.2E-06 45.1 0.4 46 264-312 3-51 (184)
93 1fp0_A KAP-1 corepressor; PHD 82.9 0.56 1.9E-05 37.7 2.2 47 263-312 23-72 (88)
94 2yql_A PHD finger protein 21A; 81.9 0.16 5.6E-06 37.1 -1.3 46 263-311 7-55 (56)
95 1weu_A Inhibitor of growth fam 81.6 0.72 2.5E-05 37.3 2.3 44 265-312 36-85 (91)
96 2cs3_A Protein C14ORF4, MY039 80.6 1.1 3.8E-05 34.9 3.0 47 264-310 14-65 (93)
97 1wen_A Inhibitor of growth fam 80.5 1 3.5E-05 34.6 2.8 44 265-312 16-65 (71)
98 2ro1_A Transcription intermedi 79.6 0.55 1.9E-05 43.3 1.2 48 265-312 2-49 (189)
99 1we9_A PHD finger family prote 78.2 0.29 1E-05 36.6 -0.9 49 264-312 5-58 (64)
100 2puy_A PHD finger protein 21A; 78.0 0.29 9.9E-06 36.3 -1.0 47 264-313 4-53 (60)
101 2ysm_A Myeloid/lymphoid or mix 77.6 0.6 2.1E-05 39.0 0.7 47 264-310 6-55 (111)
102 2e6r_A Jumonji/ARID domain-con 76.4 0.33 1.1E-05 39.4 -1.2 49 264-312 15-66 (92)
103 1xwh_A Autoimmune regulator; P 75.2 0.55 1.9E-05 35.5 -0.2 46 264-312 7-55 (66)
104 2e6s_A E3 ubiquitin-protein li 73.5 0.85 2.9E-05 35.6 0.6 46 266-311 27-76 (77)
105 2jmi_A Protein YNG1, ING1 homo 72.8 0.91 3.1E-05 36.6 0.6 45 263-311 24-75 (90)
106 2dae_A KIAA0733 protein; mitog 72.8 3 0.0001 31.7 3.4 26 480-505 12-37 (75)
107 1wev_A Riken cDNA 1110020M19; 72.5 0.59 2E-05 37.5 -0.6 51 264-314 15-74 (88)
108 3shb_A E3 ubiquitin-protein li 71.6 0.7 2.4E-05 36.2 -0.4 45 267-311 28-76 (77)
109 3v43_A Histone acetyltransfera 71.2 1 3.5E-05 37.7 0.6 45 267-311 63-111 (112)
110 3asl_A E3 ubiquitin-protein li 70.8 1 3.4E-05 34.5 0.4 45 267-311 20-68 (70)
111 3c6w_A P28ING5, inhibitor of g 70.5 0.81 2.8E-05 33.8 -0.2 43 265-311 9-57 (59)
112 3ask_A E3 ubiquitin-protein li 70.2 1.1 3.6E-05 42.5 0.5 45 267-311 176-224 (226)
113 2yt5_A Metal-response element- 69.7 0.54 1.9E-05 35.3 -1.4 51 263-313 4-62 (66)
114 2vpb_A Hpygo1, pygopus homolog 69.5 1.3 4.6E-05 33.3 0.8 48 264-311 7-65 (65)
115 3lqh_A Histone-lysine N-methyl 69.4 1.6 5.3E-05 40.0 1.4 48 265-312 2-63 (183)
116 2lbm_A Transcriptional regulat 68.4 3.4 0.00012 36.1 3.3 49 263-311 61-116 (142)
117 2g6q_A Inhibitor of growth pro 65.7 1.1 3.9E-05 33.4 -0.3 43 265-311 11-59 (62)
118 4gne_A Histone-lysine N-methyl 64.3 4 0.00014 33.9 2.8 49 263-316 13-66 (107)
119 2vnf_A ING 4, P29ING4, inhibit 61.4 1.5 5.1E-05 32.4 -0.3 43 265-311 10-58 (60)
120 2kgg_A Histone demethylase jar 58.6 1.5 5E-05 31.4 -0.8 44 267-310 4-52 (52)
121 2lv9_A Histone-lysine N-methyl 57.6 2.5 8.5E-05 34.5 0.4 44 266-311 29-75 (98)
122 3o70_A PHD finger protein 13; 57.5 2 6.9E-05 32.6 -0.2 45 265-311 19-66 (68)
123 1wep_A PHF8; structural genomi 56.8 6.5 0.00022 30.5 2.7 48 265-313 12-64 (79)
124 3ql9_A Transcriptional regulat 54.4 8.5 0.00029 33.0 3.2 50 263-312 55-111 (129)
125 2ysm_A Myeloid/lymphoid or mix 53.8 1.9 6.5E-05 35.8 -1.0 46 267-312 56-104 (111)
126 1wee_A PHD finger family prote 53.1 1.6 5.6E-05 33.3 -1.4 47 265-312 16-66 (72)
127 3i2d_A E3 SUMO-protein ligase 52.9 9.4 0.00032 38.6 3.8 51 265-316 249-301 (371)
128 1joc_A EEA1, early endosomal a 52.6 16 0.00055 31.0 4.7 29 265-293 69-101 (125)
129 2kwj_A Zinc finger protein DPF 51.6 5.2 0.00018 33.4 1.4 42 266-310 2-59 (114)
130 2ri7_A Nucleosome-remodeling f 51.6 3.1 0.0001 37.4 -0.0 48 264-312 7-59 (174)
131 2l43_A N-teminal domain from h 51.3 3.6 0.00012 32.8 0.4 49 263-313 23-76 (88)
132 3v43_A Histone acetyltransfera 51.0 11 0.00039 31.1 3.5 43 265-310 5-62 (112)
133 1zbd_B Rabphilin-3A; G protein 50.9 9.9 0.00034 32.8 3.1 49 263-311 53-106 (134)
134 4fo9_A E3 SUMO-protein ligase 50.8 11 0.00036 38.1 3.7 51 265-316 215-267 (360)
135 1wem_A Death associated transc 50.6 4 0.00014 31.4 0.5 47 265-312 16-70 (76)
136 1weo_A Cellulose synthase, cat 50.6 43 0.0015 26.6 6.4 47 265-314 16-69 (93)
137 2ku3_A Bromodomain-containing 48.5 5.2 0.00018 30.6 0.8 48 263-312 14-66 (71)
138 2kwj_A Zinc finger protein DPF 44.7 2.7 9.2E-05 35.2 -1.5 47 267-313 60-109 (114)
139 1x62_A C-terminal LIM domain p 41.4 16 0.00053 27.9 2.6 38 265-314 15-52 (79)
140 1vfy_A Phosphatidylinositol-3- 40.9 15 0.0005 28.0 2.4 29 265-293 11-43 (73)
141 2dar_A PDZ and LIM domain prot 39.9 16 0.00055 28.6 2.5 40 264-315 24-63 (90)
142 2d8x_A Protein pinch; LIM doma 39.1 20 0.00068 26.4 2.9 40 265-316 5-44 (70)
143 2d8z_A Four and A half LIM dom 38.7 21 0.00072 26.2 2.9 39 265-315 5-43 (70)
144 1x64_A Alpha-actinin-2 associa 38.7 25 0.00086 27.3 3.5 39 265-315 25-63 (89)
145 1y02_A CARP2, FYVE-ring finger 38.1 5.3 0.00018 33.9 -0.7 44 265-312 19-66 (120)
146 1wew_A DNA-binding family prot 37.8 6.2 0.00021 30.6 -0.3 47 265-312 16-72 (78)
147 1z2q_A LM5-1; membrane protein 37.5 17 0.00058 28.5 2.3 30 265-294 21-54 (84)
148 2rsd_A E3 SUMO-protein ligase 36.9 4 0.00014 30.8 -1.4 44 267-311 12-64 (68)
149 1wig_A KIAA1808 protein; LIM d 36.7 27 0.00093 26.1 3.3 39 265-315 5-43 (73)
150 1wyh_A SLIM 2, skeletal muscle 36.2 25 0.00087 25.8 3.1 39 265-315 5-45 (72)
151 3t7l_A Zinc finger FYVE domain 36.2 18 0.00062 28.7 2.3 30 265-294 20-53 (90)
152 2cor_A Pinch protein; LIM doma 35.9 28 0.00097 26.4 3.3 39 265-315 15-53 (79)
153 1x6a_A LIMK-2, LIM domain kina 35.8 29 0.001 26.3 3.4 39 265-315 15-53 (81)
154 1nyp_A Pinch protein; LIM doma 35.8 19 0.00065 26.1 2.2 39 265-315 5-43 (66)
155 2cu8_A Cysteine-rich protein 2 35.6 22 0.00075 26.7 2.6 39 265-315 9-48 (76)
156 2yw8_A RUN and FYVE domain-con 35.6 18 0.00062 28.1 2.2 29 265-293 19-51 (82)
157 1x4i_A Inhibitor of growth pro 35.5 6.7 0.00023 29.8 -0.4 44 266-313 7-56 (70)
158 3o7a_A PHD finger protein 13 v 35.1 5.5 0.00019 28.3 -0.9 41 270-311 8-51 (52)
159 3zyq_A Hepatocyte growth facto 34.7 38 0.0013 31.6 4.7 30 265-294 164-197 (226)
160 2cur_A Skeletal muscle LIM-pro 34.6 21 0.00073 26.1 2.4 38 265-314 5-42 (69)
161 1x4u_A Zinc finger, FYVE domai 34.5 18 0.00063 28.2 2.1 29 265-293 14-46 (84)
162 1dvp_A HRS, hepatocyte growth 34.2 16 0.00053 34.1 1.9 29 265-293 161-193 (220)
163 1v6g_A Actin binding LIM prote 34.1 27 0.00092 26.5 3.0 40 265-316 15-54 (81)
164 1wfk_A Zinc finger, FYVE domai 33.4 18 0.00062 28.6 1.9 29 265-293 9-41 (88)
165 1x4l_A Skeletal muscle LIM-pro 33.4 25 0.00085 26.0 2.6 38 265-314 5-46 (72)
166 2o35_A Hypothetical protein DU 32.9 16 0.00054 29.7 1.4 12 287-298 43-54 (105)
167 3fyb_A Protein of unknown func 32.8 16 0.00055 29.6 1.4 12 287-298 42-53 (104)
168 2gmg_A Hypothetical protein PF 32.0 24 0.00081 29.0 2.3 29 278-315 68-96 (105)
169 1x68_A FHL5 protein; four-and- 32.0 24 0.00083 26.4 2.3 38 265-314 5-46 (76)
170 3n00_B N-COR1, N-COR, nuclear 31.1 9.6 0.00033 22.0 -0.1 16 488-503 6-21 (21)
171 2d8v_A Zinc finger FYVE domain 30.8 22 0.00076 26.6 1.8 30 264-294 7-37 (67)
172 2fiy_A Protein FDHE homolog; F 30.8 10 0.00035 37.5 -0.0 46 263-312 180-231 (309)
173 2dlo_A Thyroid receptor-intera 29.7 29 0.001 26.3 2.5 38 265-314 15-52 (81)
174 1wd2_A Ariadne-1 protein homol 27.7 11 0.00037 27.7 -0.4 33 266-298 7-47 (60)
175 1x3h_A Leupaxin; paxillin fami 27.7 39 0.0013 25.4 2.9 40 265-316 15-54 (80)
176 2jne_A Hypothetical protein YF 27.7 4.4 0.00015 32.8 -2.7 41 265-314 32-72 (101)
177 3mpx_A FYVE, rhogef and PH dom 27.3 13 0.00045 38.1 0.0 49 265-313 375-430 (434)
178 2co8_A NEDD9 interacting prote 27.3 53 0.0018 25.0 3.6 41 264-316 14-55 (82)
179 2cuq_A Four and A half LIM dom 27.3 36 0.0012 25.6 2.6 38 265-314 15-52 (80)
180 1x4k_A Skeletal muscle LIM-pro 27.0 36 0.0012 25.0 2.5 40 265-316 5-46 (72)
181 1x63_A Skeletal muscle LIM-pro 26.7 44 0.0015 25.3 3.0 40 265-316 15-56 (82)
182 1iml_A CRIP, cysteine rich int 26.4 32 0.0011 25.7 2.2 38 267-316 2-40 (76)
183 2zet_C Melanophilin; complex, 25.5 73 0.0025 27.9 4.5 46 264-312 67-117 (153)
184 1x61_A Thyroid receptor intera 25.4 47 0.0016 24.4 2.9 38 265-314 5-44 (72)
185 2xb1_A Pygopus homolog 2, B-ce 25.1 27 0.00091 28.6 1.5 48 266-313 4-62 (105)
186 2l4z_A DNA endonuclease RBBP8, 24.4 31 0.0011 28.9 1.9 38 265-314 61-99 (123)
187 1g47_A Pinch protein; LIM doma 23.9 46 0.0016 24.7 2.6 40 265-316 11-52 (77)
188 1zfo_A LAsp-1; LIM domain, zin 23.8 51 0.0017 20.5 2.3 26 266-291 4-30 (31)
189 2dj7_A Actin-binding LIM prote 22.9 48 0.0016 25.2 2.5 38 265-314 15-53 (80)
190 2l3k_A Rhombotin-2, linker, LI 22.3 51 0.0017 27.3 2.8 37 267-315 10-48 (123)
191 2ku7_A MLL1 PHD3-CYP33 RRM chi 21.8 1.1E+02 0.0038 25.1 5.0 30 283-312 8-44 (140)
192 3mjh_B Early endosome antigen 21.1 20 0.00067 23.3 -0.1 16 265-280 5-20 (34)
193 2ehe_A Four and A half LIM dom 20.9 76 0.0026 23.9 3.4 39 265-315 15-55 (82)
194 2jvx_A NF-kappa-B essential mo 20.8 23 0.00079 21.9 0.2 13 303-315 3-15 (28)
195 2egq_A FHL1 protein; LIM domai 20.6 52 0.0018 24.5 2.3 39 265-315 15-58 (77)
No 1
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=6.8e-15 Score=109.17 Aligned_cols=48 Identities=38% Similarity=0.600 Sum_probs=44.2
Q ss_pred CCcchhhHHHHHHHHHHHhhCCCCChHHHHHHhhccCchhHHHHhhhc
Q 010130 469 RSANENIANILAMAETVREVLPHMPEDLIFQDLQRTNSATITVNNLLQ 516 (517)
Q Consensus 469 ~~~~~~~~~l~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~t~~~~~~ 516 (517)
+.++.+.+|+++||++|+++|||+|.++|.+||++||||++|++|||+
T Consensus 4 ~~~~~~~~q~~~mv~~V~~mfP~vp~~~I~~DL~~TgsVe~TienILe 51 (58)
T 2ejs_A 4 GSSGASNSQLNAMAHQIQEMFPQVPYHLVLQDLQLTRSVEITTDNILE 51 (58)
T ss_dssp CCSSCCCCHHHHHHHHHHHHCCSSCHHHHHHHHHHHCSHHHHHHHHHH
T ss_pred CcCCcchHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCHHHHHHHHHh
Confidence 345556799999999999999999999999999999999999999996
No 2
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=7.9e-15 Score=109.66 Aligned_cols=47 Identities=36% Similarity=0.621 Sum_probs=43.5
Q ss_pred CcchhhHHHHHHHHHHHhhCCCCChHHHHHHhhccCchhHHHHhhhc
Q 010130 470 SANENIANILAMAETVREVLPHMPEDLIFQDLQRTNSATITVNNLLQ 516 (517)
Q Consensus 470 ~~~~~~~~l~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~t~~~~~~ 516 (517)
.++.+.+|+++||++|+++|||+|.++|.+||++||||++|++|||+
T Consensus 5 ~~~~~~~ql~~mv~~V~~mfP~vp~~~I~~DL~~TgsVe~TienILe 51 (61)
T 2ekf_A 5 SSGSPDVQLATLAQRVKEVLPHVPLGVIQRDLAKTGCVDLTITNLLE 51 (61)
T ss_dssp SSCCCCCCHHHHHHHHHHHCSSSCHHHHHHHHHTSCCHHHHHHHHHS
T ss_pred CCCCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCHHHHHHHHHc
Confidence 44445699999999999999999999999999999999999999997
No 3
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=99.41 E-value=1.7e-13 Score=100.97 Aligned_cols=42 Identities=40% Similarity=0.660 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHhhCCCCChHHHHHHhhccCchhHHHHhhhc
Q 010130 475 IANILAMAETVREVLPHMPEDLIFQDLQRTNSATITVNNLLQ 516 (517)
Q Consensus 475 ~~~l~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~t~~~~~~ 516 (517)
.+|+++||++|+++|||+|.+.|.+||++|+||++|++|||+
T Consensus 14 ~sql~~Mve~V~~mFPqv~~~~I~~DL~rTgSVe~TienILe 55 (58)
T 4g3o_A 14 QGQLNAMAHQIQEMFPQVPYHLVLQDLQLTRSVEITTDNILE 55 (58)
T ss_dssp HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHCCHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCHHHHHHHHHc
Confidence 589999999999999999999999999999999999999997
No 4
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.26 E-value=1.7e-12 Score=96.64 Aligned_cols=47 Identities=36% Similarity=0.838 Sum_probs=41.1
Q ss_pred CCCCCccccccccc---ccccc-ccCccchhhHHHHHHhCCCCCCCCCccccCCc
Q 010130 264 YDDECAICREPMAK---AKKLL-CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 314 (517)
Q Consensus 264 ~~~~C~IC~~~~~~---~~~l~-C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 314 (517)
.+.+|+||++.+.+ +..++ |||.||..|+.+|+++ +.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~----~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS----HSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT----CCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc----CCcCcCCCCEeE
Confidence 46789999999987 56677 9999999999999987 689999999864
No 5
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=1.5e-12 Score=103.58 Aligned_cols=49 Identities=31% Similarity=0.712 Sum_probs=43.2
Q ss_pred cCCCCCcccccccccc---ccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 263 AYDDECAICREPMAKA---KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~---~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
+.+..|+||++.+..+ +.+||||.||..|+.+|+.. +.+||+||+++..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~----~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA----NRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc----CCcCcCcCCcCCC
Confidence 3567899999999877 67899999999999999998 5899999998765
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.25 E-value=3.6e-12 Score=99.53 Aligned_cols=50 Identities=32% Similarity=0.820 Sum_probs=42.8
Q ss_pred cCCCCCccccccccc---cccccccCccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 263 AYDDECAICREPMAK---AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~---~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
+.+..|+||++.+.. ++.++|||.||..|+.+|+.. +.+||+||+++...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT----NKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH----CSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc----CCCCcCcCccccCc
Confidence 456789999999854 467899999999999999998 57899999998664
No 7
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.24 E-value=2.1e-12 Score=106.86 Aligned_cols=48 Identities=35% Similarity=0.782 Sum_probs=42.3
Q ss_pred CCCCCccccccccc---cccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 264 YDDECAICREPMAK---AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 264 ~~~~C~IC~~~~~~---~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
.+..|+||++.+.. ++.+||||.||..|+.+|+.. +.+||+||+++..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK----SGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT----TCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc----CCcCcCcCccCCC
Confidence 46689999999987 567899999999999999987 5899999998754
No 8
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=5.8e-12 Score=99.38 Aligned_cols=51 Identities=22% Similarity=0.458 Sum_probs=45.3
Q ss_pred CCCCCccccccccccccc-cccCccchhhHHHHHHhCCCCCCCCCccccCCcCCCC
Q 010130 264 YDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRR 318 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~l-~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~~~ 318 (517)
.+..|+||++.+.+++.+ +|||.||..|+..|++. +..||+||+++...++
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 14 PYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY----SNRCPKCNIVVHQTQP 65 (72)
T ss_dssp GGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH----CSSCTTTCCCCCSSCS
T ss_pred CCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc----CCcCCCcCcccCcccc
Confidence 456899999999999887 99999999999999988 5899999999876544
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.23 E-value=4.2e-12 Score=94.48 Aligned_cols=47 Identities=36% Similarity=0.776 Sum_probs=41.2
Q ss_pred CCCCCccccccccc----cccccccCccchhhHHHHHHhCCCCCCCCCccccCCc
Q 010130 264 YDDECAICREPMAK----AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 314 (517)
Q Consensus 264 ~~~~C~IC~~~~~~----~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 314 (517)
.+..|+||++.+.+ ++.++|||.||..|+.+|++. +.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE----GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH----TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc----CCcCCCCCCcCC
Confidence 46789999999965 567899999999999999998 589999999763
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.23 E-value=3.7e-12 Score=99.93 Aligned_cols=49 Identities=33% Similarity=0.665 Sum_probs=43.6
Q ss_pred CCCCCcccccccccc-------ccccccCccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 264 YDDECAICREPMAKA-------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~-------~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
.+..|+||++.+.++ +.++|||.||..|+.+|+++ +.+||+||+++...
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINHK 64 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc----CCCCCCCCCccChh
Confidence 467899999999887 77899999999999999998 58999999988654
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=3.5e-12 Score=99.28 Aligned_cols=49 Identities=33% Similarity=0.680 Sum_probs=43.1
Q ss_pred cCCCCCcccccccccc-------ccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 263 AYDDECAICREPMAKA-------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~-------~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
..+..|+||++.+.++ +.++|||.||..|+..|+.. +.+||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc----CCCCCCCCCccCc
Confidence 4567899999999876 67899999999999999998 5899999998753
No 12
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=6.8e-12 Score=99.39 Aligned_cols=50 Identities=34% Similarity=0.810 Sum_probs=43.0
Q ss_pred cCCCCCccccccccccccc---cccCccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 263 AYDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
+.+..|+||++.+.++..+ +|||.||..|+.+|++. +.+||+||+++...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~----~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV----RKVCPLCNMPVLQL 65 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH----CSBCTTTCCBCSSC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc----CCcCCCcCcccccc
Confidence 3467899999999876554 99999999999999998 57999999998653
No 13
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.22 E-value=8.2e-12 Score=99.93 Aligned_cols=51 Identities=45% Similarity=0.936 Sum_probs=43.8
Q ss_pred cCCCCCcccccccccc---ccccccCccchhhHHHHHHhCCCCCCCCCccccCCcCCC
Q 010130 263 AYDDECAICREPMAKA---KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 317 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~---~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~~ 317 (517)
..+..|+||++.+.++ +.++|||.||..|+.+|++. +.+||+||+++...+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ----HDSCPVCRKSLTGQN 66 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT----TCSCTTTCCCCCCSC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc----CCcCcCcCCccCCcc
Confidence 4567899999999866 44699999999999999987 589999999987653
No 14
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.22 E-value=7.2e-12 Score=97.49 Aligned_cols=49 Identities=31% Similarity=0.754 Sum_probs=43.4
Q ss_pred cCCCCCcccccccccc-ccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 263 AYDDECAICREPMAKA-KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~-~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
+.+..|+||++.+.++ +.++|||.||..|+.+|+.+ +.+||+||+++..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ----NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH----SCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC----cCcCcCCChhhHh
Confidence 3467899999999986 77899999999999999998 5899999998854
No 15
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.21 E-value=4.9e-12 Score=112.87 Aligned_cols=48 Identities=33% Similarity=0.787 Sum_probs=43.7
Q ss_pred CCCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 264 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
.+..|+||++.+.+|+.+||||.||..|+..|+.. +.+||+||+++..
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR----KIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT----CSBCTTTCCBCCC
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHHc----CCcCCCCCCcCCC
Confidence 34579999999999999999999999999999987 6899999998854
No 16
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=4.4e-12 Score=102.59 Aligned_cols=48 Identities=38% Similarity=0.811 Sum_probs=40.1
Q ss_pred CCCCCccccccccc--------------cccc-cccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 264 YDDECAICREPMAK--------------AKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 264 ~~~~C~IC~~~~~~--------------~~~l-~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
.++.|+||++.+.+ .+.+ +|||.||..||.+|+.+ +.+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ----NNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT----CCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh----CCCCCCcCCCcch
Confidence 46789999999865 3345 49999999999999998 5899999998754
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=2.4e-12 Score=101.28 Aligned_cols=49 Identities=27% Similarity=0.501 Sum_probs=44.4
Q ss_pred cCCCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 263 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
..+..|+||++.+.+++.++|||.||..|+..|+.. +..||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL----GKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC----SSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC----CCcCcCcCchhCH
Confidence 346789999999999999999999999999999987 5899999998864
No 18
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.19 E-value=6.1e-12 Score=96.40 Aligned_cols=49 Identities=33% Similarity=0.657 Sum_probs=43.2
Q ss_pred CCCCCcccccccccc-------ccccccCccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 264 YDDECAICREPMAKA-------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~-------~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
.+..|+||++.+.++ +.++|||.||..|+.+|+++ +.+||+||+++...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH----CSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc----CCCCCCCCccCCcc
Confidence 356899999999876 67899999999999999998 58999999988654
No 19
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.2e-11 Score=95.72 Aligned_cols=50 Identities=20% Similarity=0.533 Sum_probs=43.9
Q ss_pred CCCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 264 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
.+..|+||++.+.+++.++|||.||..|+.+|+... ...||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSS---SPKCTACQESIVKD 63 (66)
T ss_dssp CCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTS---SCCCTTTCCCCCTT
T ss_pred cCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhC---cCCCCCCCcCCChh
Confidence 456899999999999999999999999999999642 57999999987653
No 20
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.17 E-value=1.2e-11 Score=106.46 Aligned_cols=53 Identities=32% Similarity=0.659 Sum_probs=42.0
Q ss_pred CCCCCccccccccccc------------------cccccCccchhhHHHHHHhCC-CCCCCCCccccCCcCC
Q 010130 264 YDDECAICREPMAKAK------------------KLLCNHLFHLACLRSWLDQGL-NEMYSCPTCRKPLFVG 316 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~------------------~l~C~H~Fh~~Cl~~wl~~~~-~~~~~CP~CR~~~~~~ 316 (517)
.++.|+||++.+.++. .++|||.||..||..|+.... ..+.+||+||+.+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3568999999997653 679999999999999996422 1257999999987543
No 21
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.16 E-value=2.1e-11 Score=96.78 Aligned_cols=51 Identities=25% Similarity=0.507 Sum_probs=43.9
Q ss_pred CCCCCcccccccccccccc-ccCccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 264 YDDECAICREPMAKAKKLL-CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~l~-C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
.+..|+||++.+.+|+.++ |||.||..||..|+.... ...||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~--~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 14 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD--EHTCPTCHQNDVSP 65 (74)
T ss_dssp GGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSS--SSCCSSSCCSSCCT
T ss_pred CCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcC--CCcCCCCCCcCCCc
Confidence 4568999999999999999 999999999999998731 36999999976543
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.5e-11 Score=99.19 Aligned_cols=48 Identities=23% Similarity=0.488 Sum_probs=43.8
Q ss_pred cCCCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCc
Q 010130 263 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 314 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 314 (517)
+.+..|+||++.+.+++.++|||.||..|+..|+.. ...||+||.++.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA----TPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH----CSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC----CCcCCCcCcccc
Confidence 346689999999999999999999999999999987 589999999875
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=1.8e-11 Score=96.54 Aligned_cols=53 Identities=23% Similarity=0.582 Sum_probs=44.8
Q ss_pred cCCCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 263 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
..+..|+||++.+.+++.++|||.||..|+..|++... ....||+||+++..+
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSC-GFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSC-SCCCCSSSCCCCCCC
T ss_pred ccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCC-CCCCCCCCCCcCCcc
Confidence 34678999999999999999999999999999997311 157999999988654
No 24
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.14 E-value=2.1e-11 Score=97.52 Aligned_cols=50 Identities=22% Similarity=0.459 Sum_probs=44.7
Q ss_pred CCCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 264 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
.+..|+||++.+.+|+.++|||.||..||..|++.+ +.+||+||.++...
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~---~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAG---HKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTT---CCBCTTTCCBCSSC
T ss_pred ccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHC---cCCCCCCcCCCChh
Confidence 467899999999999999999999999999999864 58999999987643
No 25
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.14 E-value=1.8e-11 Score=104.00 Aligned_cols=48 Identities=33% Similarity=0.731 Sum_probs=41.2
Q ss_pred CCCCCcccccccccc------------------ccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 264 YDDECAICREPMAKA------------------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~------------------~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
.++.|+||++.+.++ ..++|+|.||..||.+|+.+ +.+||+||+++..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT----CSBCSSSCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc----CCcCcCCCCccee
Confidence 467899999999754 33799999999999999998 6899999998643
No 26
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=1.1e-11 Score=96.95 Aligned_cols=48 Identities=33% Similarity=0.771 Sum_probs=43.3
Q ss_pred CCCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 264 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
.+..|+||++.+.+ +.++|||.||..|+.+|+.+ +.+||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 14 DEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR----HRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC----CSSCHHHHHCTTCC
T ss_pred CCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC----cCcCCCcCCcccCC
Confidence 46789999999998 88999999999999999986 68999999998654
No 27
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=3.6e-11 Score=98.23 Aligned_cols=53 Identities=30% Similarity=0.558 Sum_probs=44.7
Q ss_pred cCCCCCccccccccc----cccccccCccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 263 AYDDECAICREPMAK----AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~----~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
..+..|+||++.+.+ ++.++|||.||..|+..|++... ....||+||.++...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSI-NGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCS-SCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCC-CCcCCCCCCCcccch
Confidence 346789999999998 88899999999999999998731 137999999987553
No 28
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.08 E-value=6e-11 Score=103.68 Aligned_cols=49 Identities=27% Similarity=0.557 Sum_probs=43.7
Q ss_pred CCCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 264 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
.+..|+||++.+.+|+.++|||.||..|+..|+..+ ...||+||.++..
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQ---VFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT---CCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHC---cCCCCCCCccCCC
Confidence 356899999999999999999999999999999853 4699999998854
No 29
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.08 E-value=3.3e-11 Score=101.36 Aligned_cols=49 Identities=35% Similarity=0.795 Sum_probs=43.7
Q ss_pred CCCCcccccccccccc-ccccCccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 265 DDECAICREPMAKAKK-LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~-l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
+..|+||++.+.+|+. ++|||.||..||..|+... ...||+||.++...
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 22 VFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQ---RAQCPHCRAPLQLR 71 (100)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHT---CSBCTTTCCBCCGG
T ss_pred CCCCccCCccccCccccCCCCChhhHHHHHHHHHHC---cCCCCCCCCcCCHH
Confidence 4689999999999999 9999999999999999983 26999999998543
No 30
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.06 E-value=6.2e-11 Score=97.86 Aligned_cols=50 Identities=26% Similarity=0.537 Sum_probs=43.5
Q ss_pred cCCCCCcccccccccccccc-ccCccchhhHHHHHHhCCCCCCCCCccccCCc
Q 010130 263 AYDDECAICREPMAKAKKLL-CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 314 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~~~l~-C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 314 (517)
..+..|+||++.+.+|+.++ |||.||..||..|+.... ...||+||.++.
T Consensus 11 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~--~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD--EHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCT--TCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcC--CCcCcCCCCcCC
Confidence 34678999999999999999 999999999999997631 369999999863
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=9.2e-11 Score=89.80 Aligned_cols=46 Identities=26% Similarity=0.666 Sum_probs=39.8
Q ss_pred cCCCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCcc
Q 010130 263 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTC 309 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~C 309 (517)
+.+..|+||++.+.+|+.++|||.||..||.+|++... ....||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSC-GFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCS-SCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCC-CCCcCcCC
Confidence 35678999999999999999999999999999998521 15799998
No 32
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.05 E-value=9.2e-11 Score=90.44 Aligned_cols=49 Identities=24% Similarity=0.620 Sum_probs=41.6
Q ss_pred CCCCccccc-cccccc----cccccCccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 265 DDECAICRE-PMAKAK----KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 265 ~~~C~IC~~-~~~~~~----~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
+..|+||++ .+.++. .++|||.||..|+.+|+.++ ...||+||+++...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG---AGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT---SSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC---CCcCCCCCCccccc
Confidence 468999999 888874 57999999999999998764 57899999998654
No 33
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.8e-10 Score=93.17 Aligned_cols=54 Identities=30% Similarity=0.522 Sum_probs=45.3
Q ss_pred cCCCCCccccccccccccccccCccchhhHHHHHHhC--CCCCCCCCccccCCcCC
Q 010130 263 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQG--LNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~--~~~~~~CP~CR~~~~~~ 316 (517)
..+..|+||++.+.+++.++|||.||..|+..|+... ......||+||..+...
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred cCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 3467899999999999999999999999999999861 11147999999998653
No 34
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.03 E-value=9e-11 Score=100.02 Aligned_cols=50 Identities=22% Similarity=0.512 Sum_probs=44.9
Q ss_pred cCCCCCccccccccccccc-cccCccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 263 AYDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~~~l-~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
..+..|+||++.+.+|+.+ +|||.||..|+..|+.. +..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET----SKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS----CSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh----CCcCcCCCcccccc
Confidence 3467899999999999998 99999999999999998 58999999998654
No 35
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.03 E-value=1.5e-10 Score=93.66 Aligned_cols=54 Identities=30% Similarity=0.591 Sum_probs=45.5
Q ss_pred cCCCCCccccccccccccccccCccchhhHHHHHHhCC--CCCCCCCccccCCcCC
Q 010130 263 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGL--NEMYSCPTCRKPLFVG 316 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~--~~~~~CP~CR~~~~~~ 316 (517)
..+..|+||++.+.+++.++|||.||..|+..|+.... .....||+||.++...
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred ccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 34678999999999999999999999999999998731 1147999999988654
No 36
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.01 E-value=9.5e-11 Score=98.21 Aligned_cols=48 Identities=29% Similarity=0.549 Sum_probs=43.4
Q ss_pred CCCCCccccccccccccc-cccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 264 YDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~l-~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
.+..|+||++.+.+|+.+ +|||.||..|+..|+.. +..||+||.++..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY----KTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT----CCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC----CCCCCCCCCcCCh
Confidence 356899999999999888 89999999999999997 5899999998764
No 37
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.00 E-value=5.7e-11 Score=95.05 Aligned_cols=54 Identities=24% Similarity=0.476 Sum_probs=45.3
Q ss_pred cCCCCCccccccccccccccccCccchhhHHHHHHhCC---CCCCCCCccccCCcCC
Q 010130 263 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGL---NEMYSCPTCRKPLFVG 316 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~---~~~~~CP~CR~~~~~~ 316 (517)
..+..|+||++.+.+|+.++|||.||..|+..|+.... .....||+||.++...
T Consensus 10 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred ccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 34678999999999999999999999999999998621 1247999999998653
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=1.5e-10 Score=86.79 Aligned_cols=46 Identities=26% Similarity=0.761 Sum_probs=39.2
Q ss_pred cCCCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCcc
Q 010130 263 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTC 309 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~C 309 (517)
..+..|+||++.+.+++.++|||.||..|+.+|+.+.. ....||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLE-RDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSC-CSCCCSCC
T ss_pred ccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcC-CCCCCCCC
Confidence 34678999999999999999999999999999976411 15899998
No 39
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.98 E-value=5.4e-11 Score=102.59 Aligned_cols=48 Identities=33% Similarity=0.731 Sum_probs=1.0
Q ss_pred CCCCCcccccccccc------------------ccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 264 YDDECAICREPMAKA------------------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~------------------~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
.++.|+||++.+.++ ..++|+|.||..||.+|+.. +.+||+||+++..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~----~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNREWEF 112 (117)
T ss_dssp CC--------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc----CCcCCCCCCeeee
Confidence 467899999999753 12589999999999999998 6899999998643
No 40
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.96 E-value=4.1e-10 Score=96.26 Aligned_cols=51 Identities=27% Similarity=0.576 Sum_probs=43.7
Q ss_pred CCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 265 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
+..|+||++.+.+|+.++|||.||..|+..|+..... ...||+||.++...
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~-~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKG-PSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSS-SCCCTTTSCCCCTT
T ss_pred CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCC-CCCCcCCCCcCCHh
Confidence 4579999999999999999999999999999986311 25899999988654
No 41
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.96 E-value=2.2e-10 Score=103.60 Aligned_cols=50 Identities=26% Similarity=0.518 Sum_probs=44.2
Q ss_pred CCCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 264 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
.+..|+||++.+.+|+.++|||.||..||..|+... ...||+||.++...
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQ---VFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT---CCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhC---CCcCCCCCccCCCC
Confidence 356899999999999999999999999999999873 45899999988654
No 42
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.95 E-value=5.7e-11 Score=102.38 Aligned_cols=48 Identities=29% Similarity=0.717 Sum_probs=43.1
Q ss_pred CCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 265 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
+..|+||++.+.+|+.++|||.||..|+..|+..+ ...||+||..+..
T Consensus 15 ~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKA---SLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTT---TSBCTTTCCBCHH
T ss_pred CCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHC---cCCCCCCCcccCc
Confidence 45899999999999999999999999999999764 5799999998853
No 43
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.94 E-value=3.6e-10 Score=92.16 Aligned_cols=48 Identities=13% Similarity=0.028 Sum_probs=44.0
Q ss_pred CCCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 264 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
.+..|+||++.|.+|+.++|||.||..||..|+.. +.+||.||.++..
T Consensus 13 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~----~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN----SPTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH----CSBCTTTCCBCCG
T ss_pred hheECcccCchhcCCeECCCCCEECHHHHHHHHhc----CCCCCCCcCCCCh
Confidence 46789999999999999999999999999999997 5899999998754
No 44
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.93 E-value=2.9e-10 Score=99.78 Aligned_cols=50 Identities=34% Similarity=0.683 Sum_probs=44.3
Q ss_pred CCCCCcccccccccc-------ccccccCccchhhHHHHHHhCCCCCCCCCccccCCcCCC
Q 010130 264 YDDECAICREPMAKA-------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 317 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~-------~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~~ 317 (517)
.+..|+||++.+.++ +.++|||.||..|+.+|++. +.+||+||+.+....
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINHKR 62 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT----CSBCTTTCCBCTTTC
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh----CCCCCCCCCcCcccc
Confidence 456899999999988 78899999999999999988 579999999986543
No 45
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=6.1e-10 Score=89.65 Aligned_cols=52 Identities=25% Similarity=0.616 Sum_probs=42.0
Q ss_pred cCCCCCcccccccc--cccccccc-----CccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 263 AYDDECAICREPMA--KAKKLLCN-----HLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 263 ~~~~~C~IC~~~~~--~~~~l~C~-----H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
..+..|.||++++. ++..+||+ |.||..||.+|+.... ..+||+||.++...
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~--~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSD--TRCCELCKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHC--CSBCSSSCCBCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCC--CCCCCCCCCeeecC
Confidence 34678999999885 34567996 9999999999998731 36999999998654
No 46
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.92 E-value=1.1e-09 Score=87.80 Aligned_cols=52 Identities=25% Similarity=0.482 Sum_probs=41.3
Q ss_pred cCCCCCcccccccc--cccccc--ccCccchhhHHHHHHhCCCCCCCCCccccCCcCCC
Q 010130 263 AYDDECAICREPMA--KAKKLL--CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 317 (517)
Q Consensus 263 ~~~~~C~IC~~~~~--~~~~l~--C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~~ 317 (517)
+.+..|+||++.+. ++..+| |||.||..|+..+++.. ...||.||+++....
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~---~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDE---NGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSS---CSBCTTTCCBCSSCS
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcC---CCCCCCCCCccCCCc
Confidence 34668999999985 344555 99999999999988653 589999999986653
No 47
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.91 E-value=4.2e-10 Score=94.63 Aligned_cols=48 Identities=13% Similarity=0.052 Sum_probs=43.9
Q ss_pred CCCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 264 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
.+..|+||++.|.+|+.++|||.||..||..|+.. +.+||.||.++..
T Consensus 28 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~----~~~cP~~~~~l~~ 75 (100)
T 2kre_A 28 DEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN----SPTDPFNRQTLTE 75 (100)
T ss_dssp TTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS----CSBCSSSCCBCCT
T ss_pred HhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc----CCCCCCCCCCCCh
Confidence 45789999999999999999999999999999986 5899999998754
No 48
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.91 E-value=2.7e-10 Score=98.24 Aligned_cols=50 Identities=32% Similarity=0.633 Sum_probs=44.5
Q ss_pred CCCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 264 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
.+..|+||++.+.+|+.++|||.||..|+..|+... +..||+||.++...
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVM---GSYCPSCRYPCFPT 71 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT---CSBCTTTCCBCCGG
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHC---cCcCCCCCCCCCHh
Confidence 356899999999999999999999999999999874 47999999988653
No 49
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.91 E-value=4.3e-10 Score=103.19 Aligned_cols=48 Identities=33% Similarity=0.672 Sum_probs=42.8
Q ss_pred CCCCccccccccccccc-cccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 265 DDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l-~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
+..|+||++.+.+++.+ +|||.||..|+..|+..+ ...||+||.++..
T Consensus 54 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKNTMTTKECLHRFCADCIITALRSG---NKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTT---CCBCTTTCCBCCS
T ss_pred CCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhC---cCCCCCCCCcCCC
Confidence 45899999999999887 999999999999999864 5799999998854
No 50
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.91 E-value=1.6e-09 Score=107.14 Aligned_cols=49 Identities=16% Similarity=-0.026 Sum_probs=43.7
Q ss_pred CCCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 264 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
.+..|+||++.|.+|+.+||||+||..||..|+..+ +.+||+||.++..
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~---~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV---GHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHT---CSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHC---CCCCcCCCCCCch
Confidence 466899999999999999999999999999999874 3569999998854
No 51
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.90 E-value=4.7e-10 Score=83.95 Aligned_cols=46 Identities=28% Similarity=0.554 Sum_probs=40.2
Q ss_pred CCCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 264 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
.+..|+||++.+.+|+.++|||.||..|+..| ...||+||+++..+
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~-------~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS-------GMQCPICQAPWPLG 50 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS-------SSSCSSCCSSSSCC
T ss_pred cCCCceEeCCccCCeEEcCCCCcccHHHHccC-------CCCCCcCCcEeecC
Confidence 45689999999999999999999999999762 47899999987653
No 52
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.89 E-value=4.2e-10 Score=97.49 Aligned_cols=49 Identities=27% Similarity=0.493 Sum_probs=43.5
Q ss_pred CCCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 264 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
.+..|+||++.+.+|+.++|||.||..|+..|+... ...||+||.++..
T Consensus 17 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 17 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDA---GHKCPVDNEILLE 65 (118)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH---CSBCTTTCCBCCG
T ss_pred CCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhC---CCCCCCCCCCcCH
Confidence 456899999999999999999999999999999873 3499999998754
No 53
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.88 E-value=7.3e-10 Score=92.78 Aligned_cols=48 Identities=17% Similarity=0.038 Sum_probs=43.9
Q ss_pred CCCCCcccccccccccccccc-CccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 264 YDDECAICREPMAKAKKLLCN-HLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~l~C~-H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
.+..|+||++.|.+|+.++|| |.||+.||..|+.. +.+||.||.++..
T Consensus 21 ~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~----~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS----DQTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT----SCBCTTTCSBCCT
T ss_pred HhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh----CCCCCCCCCCCCh
Confidence 467899999999999999999 99999999999987 5799999998754
No 54
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.84 E-value=1.9e-09 Score=85.17 Aligned_cols=55 Identities=18% Similarity=0.439 Sum_probs=43.6
Q ss_pred cCCCCCccccccccccccc-cccCccchhhHHHHHHhCCCCCCCCCccccCCcCCCCc
Q 010130 263 AYDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRRE 319 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~~~l-~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~~~~ 319 (517)
+..+.|+||++.+...++- .|+|.||..||.+|+++.. +.+||+||+++....+.
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~--~~~CP~Cr~~w~~~~~~ 68 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA--EPRCPHCNDYWPHEIPK 68 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCS--SCCCTTTCSCCCSCCCC
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcC--CCCCCCCcCcCCCCCCC
Confidence 3456899999999765443 8999999999999998732 27999999998765443
No 55
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.84 E-value=9.1e-10 Score=96.58 Aligned_cols=50 Identities=32% Similarity=0.659 Sum_probs=44.1
Q ss_pred cCCCCCcccccccccc-------ccccccCccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 263 AYDDECAICREPMAKA-------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~-------~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
+.+..|+||++.+.++ +.++|||.||..|+.+|++. +.+||+||+++..+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH----CSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc----CCCCCCCCCcCChh
Confidence 4567899999999876 67899999999999999998 68999999998654
No 56
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.84 E-value=1.2e-09 Score=84.16 Aligned_cols=47 Identities=23% Similarity=0.556 Sum_probs=41.7
Q ss_pred CCCCCccccccccccccc--cccCc-cchhhHHHHHHhCCCCCCCCCccccCCc
Q 010130 264 YDDECAICREPMAKAKKL--LCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLF 314 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~l--~C~H~-Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 314 (517)
.+..|.||++...+++.+ ||||. ||..|+..|.+. +..||+||+++.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~----~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR----NKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT----TCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc----CCcCCCcCcchh
Confidence 356899999999998876 99999 899999999987 589999999874
No 57
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.83 E-value=1.2e-09 Score=83.79 Aligned_cols=48 Identities=23% Similarity=0.505 Sum_probs=42.0
Q ss_pred cCCCCCccccccccccccc--cccCc-cchhhHHHHHHhCCCCCCCCCccccCCc
Q 010130 263 AYDDECAICREPMAKAKKL--LCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLF 314 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~~~l--~C~H~-Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 314 (517)
+.+..|.||++...++..+ ||||. ||..|+..|.+. +..||+||+++.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~----~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA----GASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT----TCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh----CCcCCCcCchhh
Confidence 3466899999999888777 99998 999999999987 589999999874
No 58
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.82 E-value=1.5e-09 Score=111.60 Aligned_cols=49 Identities=33% Similarity=0.611 Sum_probs=43.7
Q ss_pred CCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 265 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
+..|+||++.+.+++.+||||.||..|+..|+.+. ..+||+||+++...
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~---~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESE---GQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHT---CSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcC---CCCCCCCCCccCCc
Confidence 36899999999999999999999999999999842 58999999988653
No 59
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.81 E-value=7.7e-10 Score=98.93 Aligned_cols=50 Identities=24% Similarity=0.510 Sum_probs=44.0
Q ss_pred cCCCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 263 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
+.+..|+||++.+.+|+.++|||.||..||..|+..+ ...||+||.++..
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSG---PQNCAACVHEGIY 78 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGS---CEECHHHHHTTCC
T ss_pred CcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcC---CCCCCCCCCcccc
Confidence 3567899999999999999999999999999999873 4599999998754
No 60
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.74 E-value=2.7e-09 Score=92.15 Aligned_cols=46 Identities=24% Similarity=0.648 Sum_probs=41.2
Q ss_pred CCCCCccccccccccccc-cccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 264 YDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~l-~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
.+..|+||++.+.+|+.+ +|||.||..||..|+. ..||+||.++..
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~------~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG------TGCPVCYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT------TBCSSSCCBCSC
T ss_pred hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc------CCCcCCCCcCcc
Confidence 356899999999999999 9999999999999986 489999998743
No 61
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.72 E-value=4.4e-09 Score=97.26 Aligned_cols=49 Identities=16% Similarity=-0.035 Sum_probs=43.3
Q ss_pred CCCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 264 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
.+..|+||++.|.+|+.+||||+||..||..|+..+ +.+||.||.++..
T Consensus 105 ~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~---~~tcP~t~~~l~~ 153 (179)
T 2f42_A 105 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV---GHFDPVTRSPLTQ 153 (179)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT---CSBCTTTCCBCCG
T ss_pred HhhcccCccccCCCCeECCCCCEECHHHHHHHHHhC---CCCCCCCcCCCCh
Confidence 355899999999999999999999999999999874 3479999998754
No 62
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.68 E-value=2.5e-09 Score=84.68 Aligned_cols=43 Identities=23% Similarity=0.522 Sum_probs=38.6
Q ss_pred CCCCccccccccccccccccCc-cchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 265 DDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~C~H~-Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
+..|+||++.+.+++.+||||. ||..|+..| ..||+||+++..
T Consensus 24 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV--------DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC--------SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC--------ccCCCcCcCccC
Confidence 4689999999999999999999 999999876 489999998754
No 63
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.66 E-value=7.9e-09 Score=85.77 Aligned_cols=51 Identities=22% Similarity=0.441 Sum_probs=41.9
Q ss_pred CCCCCcccccccccccccc-ccCccchhhHHHHHHhC--CCCCCCCCc--cccC-Cc
Q 010130 264 YDDECAICREPMAKAKKLL-CNHLFHLACLRSWLDQG--LNEMYSCPT--CRKP-LF 314 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~l~-C~H~Fh~~Cl~~wl~~~--~~~~~~CP~--CR~~-~~ 314 (517)
.+..|+||++.|.+|+.++ |||+||..||..|+..+ .....+||+ |+.. +.
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~ 62 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR 62 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC
T ss_pred cEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC
Confidence 3568999999999999996 99999999999999862 111369999 9876 43
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=2.2e-08 Score=77.89 Aligned_cols=47 Identities=21% Similarity=0.584 Sum_probs=40.4
Q ss_pred hcCCCCCccccccccccccccccCc-cchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 262 RAYDDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 262 ~~~~~~C~IC~~~~~~~~~l~C~H~-Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
.+.+..|.||++...+++.+||||. ||..|+.. ...||+||+++...
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~--------~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY--------FQQCPMCRQFVQES 59 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH--------CSSCTTTCCCCCCE
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc--------CCCCCCCCcchhce
Confidence 3456789999999999999999999 99999973 47999999988653
No 65
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.60 E-value=1.2e-08 Score=93.95 Aligned_cols=49 Identities=27% Similarity=0.493 Sum_probs=43.6
Q ss_pred CCCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 264 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
.+..|+||++.+.+|+.++|||.||..|+.+|+..+ ...||+||.++..
T Consensus 17 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 17 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDA---GHKCPVDNEILLE 65 (170)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH---CSBCTTTCCBCCG
T ss_pred CCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhC---CCCCCCCccCcch
Confidence 456899999999999999999999999999999873 3599999998755
No 66
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=3.4e-08 Score=78.24 Aligned_cols=43 Identities=23% Similarity=0.554 Sum_probs=37.9
Q ss_pred CCCCccccccccccccccccCc-cchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 265 DDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~C~H~-Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
+..|+||++.+.+++.+||||. ||..|+.. ...||+||.++..
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~--------~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEA--------VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH--------CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhC--------CCCCccCCceecC
Confidence 4579999999999999999999 99999953 4799999998754
No 67
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.47 E-value=4.8e-08 Score=97.71 Aligned_cols=53 Identities=23% Similarity=0.532 Sum_probs=40.0
Q ss_pred cCCCCCccccccccc----c----ccccccCccchhhHHHHHHhCCC-------CCCCCCccccCCcC
Q 010130 263 AYDDECAICREPMAK----A----KKLLCNHLFHLACLRSWLDQGLN-------EMYSCPTCRKPLFV 315 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~----~----~~l~C~H~Fh~~Cl~~wl~~~~~-------~~~~CP~CR~~~~~ 315 (517)
+...+|+||++.+.+ | ...+|||.||..||.+|+++... -..+||.||+++..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 345689999998876 2 12479999999999999986210 01479999998864
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.41 E-value=1.2e-07 Score=92.10 Aligned_cols=51 Identities=22% Similarity=0.477 Sum_probs=43.1
Q ss_pred CCCCCccccccccccccc-cccCccchhhHHHHHHhCCCCCCCCCc--cccCCcCC
Q 010130 264 YDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPT--CRKPLFVG 316 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~l-~C~H~Fh~~Cl~~wl~~~~~~~~~CP~--CR~~~~~~ 316 (517)
.+..|+||++.|.+|++. .|||.||+.||..|+..+. ...||+ ||..+...
T Consensus 180 ~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~--~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 180 IELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYT--TRDCPQAACSQVVSMR 233 (267)
T ss_dssp CCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCS--CEECSGGGCSCEECGG
T ss_pred eeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCC--CCCCCcccccCcCchh
Confidence 356799999999999985 9999999999999998631 468999 99977543
No 69
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.34 E-value=2.4e-07 Score=70.14 Aligned_cols=49 Identities=24% Similarity=0.504 Sum_probs=39.5
Q ss_pred CCCCCcccccccccccccccc--C---ccchhhHHHHHHhCCCCCCCCCccccCCc
Q 010130 264 YDDECAICREPMAKAKKLLCN--H---LFHLACLRSWLDQGLNEMYSCPTCRKPLF 314 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~l~C~--H---~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 314 (517)
.+..|.||+++..++..+||. | .||..|+.+|+.... +.+||+||.++.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~--~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISR--NTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHT--CSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCC--CCccCCCCCeee
Confidence 466899999987666677865 4 999999999997532 479999998764
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.34 E-value=1.3e-07 Score=71.80 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=42.8
Q ss_pred CCCccccccccccccc-cccCccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 266 DECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 266 ~~C~IC~~~~~~~~~l-~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
..|+||++.|.+|+.+ +|||.|.+.||.+|++. +.+||+++.++...
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~----~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD----TGNDPITNEPLSIE 51 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH----HSBCTTTCCBCCGG
T ss_pred EEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh----CCCCcCCcCCCChh
Confidence 5799999999999999 99999999999999987 46899999988654
No 71
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.31 E-value=1.4e-07 Score=75.63 Aligned_cols=44 Identities=25% Similarity=0.470 Sum_probs=38.2
Q ss_pred CCCCccccccccccccccccCc-cchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 265 DDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~C~H~-Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
+..|+||++...+++.+||||. ||..|+..| ..||+||.++...
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQL--------QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC--------SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhc--------CcCCCCCchhhCe
Confidence 4579999999999999999999 999998643 4899999988543
No 72
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.24 E-value=1.9e-07 Score=95.37 Aligned_cols=44 Identities=25% Similarity=0.569 Sum_probs=39.4
Q ss_pred CCCCCccccccccccccccccCc-cchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 264 YDDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~l~C~H~-Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
.+..|+||++.+.+++.+||||. ||..|+..| ..||+||.++..
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~--------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL--------RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC--------SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC--------CcCCCCCCCccC
Confidence 46789999999999999999999 999999876 489999998754
No 73
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.16 E-value=9.1e-07 Score=73.06 Aligned_cols=48 Identities=25% Similarity=0.652 Sum_probs=38.2
Q ss_pred CCCCccccccccccccc---cccCccchhhHHHHHHhC----CCCCCCCCc--cccC
Q 010130 265 DDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQG----LNEMYSCPT--CRKP 312 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~~----~~~~~~CP~--CR~~ 312 (517)
..+|+||++.+..+..+ +|||.||..|+..+++.. ......||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 45899999999877543 799999999999998742 111358999 9987
No 74
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.80 E-value=1e-05 Score=66.50 Aligned_cols=46 Identities=26% Similarity=0.635 Sum_probs=38.3
Q ss_pred CCccccccccc-cccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 267 ECAICREPMAK-AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 267 ~C~IC~~~~~~-~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
-|.+|--++.. ++.+||+|.||.+|...|.+++ .++||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~---~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKG---DKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTT---CCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhcc---CCCCcCcCCeeee
Confidence 48888877764 4667999999999999998764 5899999999854
No 75
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.50 E-value=6.1e-05 Score=72.83 Aligned_cols=53 Identities=19% Similarity=0.471 Sum_probs=42.2
Q ss_pred CCCCccccccccccccc-cccCccchhhHHHHHHhCCCCCCCCCccccCCcCCCCc
Q 010130 265 DDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRRE 319 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l-~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~~~~ 319 (517)
-..|.||.+....+++= .|+|.||..|+..|++... +..||.|+.+++...|.
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~--~~~CP~C~~~W~~~~~~ 233 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA--EPRCPHCNDYWPHEIPK 233 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCS--SCBCTTTCCBCCSCCCC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCC--CCCCCCCCCCCCCCCCC
Confidence 45799999998766544 3999999999999997632 46999999998766443
No 76
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.28 E-value=0.00024 Score=54.47 Aligned_cols=42 Identities=24% Similarity=0.377 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhhCCCCChHHHHHHhhccC-chhHHHHhhhcC
Q 010130 476 ANILAMAETVREVLPHMPEDLIFQDLQRTN-SATITVNNLLQM 517 (517)
Q Consensus 476 ~~l~~~~~~v~~~~~~~~~~~i~~~~~~~~-~~~~t~~~~~~~ 517 (517)
.+.+..+++++++||++...+|...|...+ .|+.||+.+|+|
T Consensus 16 ~~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 16 LEFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CCSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 455677899999999999999999997776 899999999975
No 77
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=96.26 E-value=0.0071 Score=46.58 Aligned_cols=41 Identities=22% Similarity=0.438 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhhCCCCChHHHHHHhhcc-CchhHHHHhhhc
Q 010130 476 ANILAMAETVREVLPHMPEDLIFQDLQRT-NSATITVNNLLQ 516 (517)
Q Consensus 476 ~~l~~~~~~v~~~~~~~~~~~i~~~~~~~-~~~~~t~~~~~~ 516 (517)
.++++++++|++.|||+...-|.+=|..- .+|+.+||+|||
T Consensus 11 ~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 11 VELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp HHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 89999999999999999999999977766 599999999998
No 78
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=95.07 E-value=0.032 Score=39.07 Aligned_cols=37 Identities=35% Similarity=0.541 Sum_probs=33.5
Q ss_pred HHHHHHHhhCCCCChHHHHHHhhccC-chhHHHHhhhc
Q 010130 480 AMAETVREVLPHMPEDLIFQDLQRTN-SATITVNNLLQ 516 (517)
Q Consensus 480 ~~~~~v~~~~~~~~~~~i~~~~~~~~-~~~~t~~~~~~ 516 (517)
..++|++.||+.-+.++|.++|++|+ .|..-+||+|-
T Consensus 11 ~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLs 48 (53)
T 2qho_B 11 ELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLS 48 (53)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHhc
Confidence 45788999999999999999999998 69999999984
No 79
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=95.00 E-value=0.028 Score=41.88 Aligned_cols=40 Identities=23% Similarity=0.409 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhCCCCChHHHHHHhhc-cCchhHHHHhhhcC
Q 010130 478 ILAMAETVREVLPHMPEDLIFQDLQR-TNSATITVNNLLQM 517 (517)
Q Consensus 478 l~~~~~~v~~~~~~~~~~~i~~~~~~-~~~~~~t~~~~~~~ 517 (517)
.+..+++++++||++...+|..=|.. -+.|+.||+.+|+|
T Consensus 9 ~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 9 SEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQM 49 (59)
T ss_dssp CHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 35678999999999999999998854 45699999999987
No 80
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=94.73 E-value=0.027 Score=40.98 Aligned_cols=42 Identities=19% Similarity=0.220 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhhCCCCChHHHHHHhhcc-CchhHHHHhhhcC
Q 010130 476 ANILAMAETVREVLPHMPEDLIFQDLQRT-NSATITVNNLLQM 517 (517)
Q Consensus 476 ~~l~~~~~~v~~~~~~~~~~~i~~~~~~~-~~~~~t~~~~~~~ 517 (517)
.+.+..++++++|||++-.+||..=|... +.++.||+.+|+|
T Consensus 10 ~e~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLqm 52 (54)
T 1p3q_Q 10 NERKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLSL 52 (54)
T ss_dssp HHHHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC-----
T ss_pred HHHHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHhh
Confidence 56778899999999999999988766544 5699999999987
No 81
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.23 E-value=0.04 Score=45.29 Aligned_cols=31 Identities=23% Similarity=0.508 Sum_probs=26.3
Q ss_pred CCCCcccccc-cccccc--ccccCccchhhHHHH
Q 010130 265 DDECAICREP-MAKAKK--LLCNHLFHLACLRSW 295 (517)
Q Consensus 265 ~~~C~IC~~~-~~~~~~--l~C~H~Fh~~Cl~~w 295 (517)
+..|.||.+. +.+++. ++|+|.||..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 5689999976 567777 899999999999973
No 82
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=92.76 E-value=0.07 Score=42.15 Aligned_cols=48 Identities=25% Similarity=0.581 Sum_probs=32.2
Q ss_pred cCCCCCcccccccccccccc---ccCccchhhHHHH------------HHhCCCCCCCCCcccc
Q 010130 263 AYDDECAICREPMAKAKKLL---CNHLFHLACLRSW------------LDQGLNEMYSCPTCRK 311 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~~~l~---C~H~Fh~~Cl~~w------------l~~~~~~~~~CP~CR~ 311 (517)
..|+.|.||-. +.....+| |+-+||..|+++- +........+||.|..
T Consensus 13 ~~D~~C~VC~~-~t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 13 VNDEMCDVCEV-WTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CCSCCCTTTCC-CCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CCCcccCcccc-ccccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 46889999963 23334554 7899999999885 1111223589999943
No 83
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.30 E-value=0.075 Score=40.45 Aligned_cols=47 Identities=21% Similarity=0.444 Sum_probs=35.5
Q ss_pred cCCCCCccccccccccccc---cccCccchhhHHHHHHhCCCCCCCCCccccC
Q 010130 263 AYDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 312 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 312 (517)
..+..|.||.+. ...+ .|...||..|+...+..-+.....||.|++.
T Consensus 10 ~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 345679999864 2333 6889999999988887655556899999764
No 84
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=91.87 E-value=0.066 Score=43.19 Aligned_cols=46 Identities=30% Similarity=0.584 Sum_probs=37.1
Q ss_pred CCCCcccccccccccccccc-CccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 265 DDECAICREPMAKAKKLLCN-HLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~C~-H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
...|-.|+-..+ -.+.|. |..|..|+...+.. +..||+|+.+++.+
T Consensus 28 ~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~----SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 28 PQFCKSCWFENK--GLVECNNHYLCLNCLTLLLSV----SNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSS----SSEETTTTEECCCC
T ss_pred cccChhhccccC--CeeeecchhhHHHHHHHHHhh----ccCCcccCCcCCcc
Confidence 356999986543 345666 99999999998888 69999999998765
No 85
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=90.77 E-value=0.24 Score=35.28 Aligned_cols=40 Identities=15% Similarity=0.232 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhCCCCChHHHHHHhhcc-CchhHHHHhhhcC
Q 010130 478 ILAMAETVREVLPHMPEDLIFQDLQRT-NSATITVNNLLQM 517 (517)
Q Consensus 478 l~~~~~~v~~~~~~~~~~~i~~~~~~~-~~~~~t~~~~~~~ 517 (517)
.+..++.+.||||.+...+|..=|... +.++.+++.+|+|
T Consensus 4 ~e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 4 HESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 367889999999999999999988654 6799999998875
No 86
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=89.17 E-value=0.63 Score=52.83 Aligned_cols=48 Identities=15% Similarity=0.037 Sum_probs=42.7
Q ss_pred CCCCcccccccccccccccc-CccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 265 DDECAICREPMAKAKKLLCN-HLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~C~-H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
+..|+|-.+.|.+|+.+|.| +.|-+.+|..|+.+ +.+||.=|.++...
T Consensus 891 ~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~----~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 891 EFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS----DSTDPFNRMPLKLE 939 (968)
T ss_dssp GGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT----CCBCTTTCCBCCGG
T ss_pred HhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc----CCCCCCCCCCCCcc
Confidence 45699999999999999998 68999999999987 57999999988643
No 87
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=87.41 E-value=0.17 Score=37.70 Aligned_cols=48 Identities=27% Similarity=0.639 Sum_probs=33.9
Q ss_pred cCCCCCccccccccccccc---cccCccchhhHHHHHHhCCCCCCCCCccccCC
Q 010130 263 AYDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 313 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~ 313 (517)
..+..|.+|.+. ...+ .|...||..|+..-+..-+.....||.|+...
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 456789999863 2233 58899999999865544333468899998653
No 88
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=86.52 E-value=0.079 Score=41.21 Aligned_cols=51 Identities=18% Similarity=0.423 Sum_probs=33.7
Q ss_pred CCCCCccccccccccccc---cccCccchhhHHHHHHhCCCCCCCCCccccCCc
Q 010130 264 YDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 314 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 314 (517)
.+..|.||.........+ .|...||..|+..-..........||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 345699998765432233 588999999987533322223689999987653
No 89
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=86.12 E-value=0.27 Score=35.03 Aligned_cols=45 Identities=36% Similarity=0.805 Sum_probs=31.0
Q ss_pred CCccccccccccccc---cccCccchhhHHHHHHhCCCCCCCCCcccc
Q 010130 267 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 311 (517)
Q Consensus 267 ~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 311 (517)
.|.||...-.....+ .|...||..|+..=+...+.....||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588998654333333 688999999997544443334688999975
No 90
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=84.79 E-value=0.26 Score=36.70 Aligned_cols=46 Identities=26% Similarity=0.780 Sum_probs=33.4
Q ss_pred cCCCCCccccccccccccc---cccCccchhhHHHHHHhCCCCCCCCCcccc
Q 010130 263 AYDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 311 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 311 (517)
..+..|.+|.+. ...+ .|...||..|+..-+...+.....||.|++
T Consensus 9 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 346789999874 2333 688899999998755444444689999975
No 91
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=84.69 E-value=0.18 Score=47.18 Aligned_cols=47 Identities=30% Similarity=0.559 Sum_probs=34.7
Q ss_pred cCCCCCccccccccccccc---cccCccchhhHHHHHHhCCCCCCCCCccccC
Q 010130 263 AYDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 312 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 312 (517)
..++.|.+|.+.- ..+ .|...||..|+.+-+...+.+...||.|+..
T Consensus 5 ~~~~~C~~C~~~g---~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 5 PNEDWCAVCQNGG---DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SSCSSBTTTCCCE---EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCCC---ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 4567899998652 233 5889999999987666544446899999874
No 92
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=82.96 E-value=0.27 Score=45.06 Aligned_cols=46 Identities=30% Similarity=0.649 Sum_probs=34.0
Q ss_pred CCCCCccccccccccccc---cccCccchhhHHHHHHhCCCCCCCCCccccC
Q 010130 264 YDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 312 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 312 (517)
.++.|.+|.+. +..+ .|...||..|+..-+...+.+...||.|+..
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp SCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCc
Confidence 46789999865 2333 5889999999977666544446899999874
No 93
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=82.92 E-value=0.56 Score=37.66 Aligned_cols=47 Identities=28% Similarity=0.629 Sum_probs=34.8
Q ss_pred cCCCCCccccccccccccc---cccCccchhhHHHHHHhCCCCCCCCCccccC
Q 010130 263 AYDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 312 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 312 (517)
..++.|.+|.+. ...+ .|.-.||..|+.+=+..-+.....||.|+..
T Consensus 23 ~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 457789999865 2333 5778999999977665544446899999864
No 94
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.93 E-value=0.16 Score=37.11 Aligned_cols=46 Identities=33% Similarity=0.832 Sum_probs=32.6
Q ss_pred cCCCCCccccccccccccc---cccCccchhhHHHHHHhCCCCCCCCCcccc
Q 010130 263 AYDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 311 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 311 (517)
..+..|.+|.+. ...+ .|...||..|+..-+...+.....||.|+.
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 356789999875 2333 688999999998655443334678999964
No 95
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=81.59 E-value=0.72 Score=37.31 Aligned_cols=44 Identities=25% Similarity=0.700 Sum_probs=29.5
Q ss_pred CCCCccccccccccccc---c--cc-CccchhhHHHHHHhCCCCCCCCCccccC
Q 010130 265 DDECAICREPMAKAKKL---L--CN-HLFHLACLRSWLDQGLNEMYSCPTCRKP 312 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l---~--C~-H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 312 (517)
...| ||..... ...+ . |. ..||..|+. +...+.....||.|+..
T Consensus 36 ~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 36 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 3456 9988643 3333 2 55 689999997 44433447899999864
No 96
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=80.59 E-value=1.1 Score=34.91 Aligned_cols=47 Identities=23% Similarity=0.501 Sum_probs=35.2
Q ss_pred CCCCCccccccccccccccc----cCccchhhHHHHHHhC-CCCCCCCCccc
Q 010130 264 YDDECAICREPMAKAKKLLC----NHLFHLACLRSWLDQG-LNEMYSCPTCR 310 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~l~C----~H~Fh~~Cl~~wl~~~-~~~~~~CP~CR 310 (517)
....|.+|.|.+++.....| +|.||..|-+..++++ ......||.=.
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG~ 65 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGE 65 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTSS
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCCC
Confidence 34679999999999877766 5999999999988763 22245676543
No 97
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=80.50 E-value=1 Score=34.56 Aligned_cols=44 Identities=25% Similarity=0.700 Sum_probs=29.9
Q ss_pred CCCCccccccccccccc---c--cc-CccchhhHHHHHHhCCCCCCCCCccccC
Q 010130 265 DDECAICREPMAKAKKL---L--CN-HLFHLACLRSWLDQGLNEMYSCPTCRKP 312 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l---~--C~-H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 312 (517)
...| ||..... ...+ . |. ..||..|+. +...+.....||.|+..
T Consensus 16 ~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 16 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp CCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 4557 8987543 3333 3 65 699999997 44444457899999764
No 98
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=79.64 E-value=0.55 Score=43.31 Aligned_cols=48 Identities=27% Similarity=0.536 Sum_probs=32.7
Q ss_pred CCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccC
Q 010130 265 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 312 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 312 (517)
++.|.+|.+.-.--.--.|...||..|+..=+...+.+...||.|+..
T Consensus 2 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 567999986522111125889999999976554433446899999865
No 99
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=78.24 E-value=0.29 Score=36.63 Aligned_cols=49 Identities=27% Similarity=0.647 Sum_probs=32.4
Q ss_pred CCCCCccccccccccc-cc---cccCccchhhHHHHHHh-CCCCCCCCCccccC
Q 010130 264 YDDECAICREPMAKAK-KL---LCNHLFHLACLRSWLDQ-GLNEMYSCPTCRKP 312 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~-~l---~C~H~Fh~~Cl~~wl~~-~~~~~~~CP~CR~~ 312 (517)
.+..|++|.....+.. .+ .|...||..|+.--... .......||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 4567999998875332 22 68899999998532211 01236899999764
No 100
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=77.99 E-value=0.29 Score=36.26 Aligned_cols=47 Identities=32% Similarity=0.829 Sum_probs=33.6
Q ss_pred CCCCCccccccccccccc---cccCccchhhHHHHHHhCCCCCCCCCccccCC
Q 010130 264 YDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 313 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~ 313 (517)
.+..|.+|... ...+ .|...||..|+..-+...+.....||.|+...
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 46789999874 2333 68899999999865544334468899997653
No 101
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=77.58 E-value=0.6 Score=38.99 Aligned_cols=47 Identities=23% Similarity=0.616 Sum_probs=31.9
Q ss_pred CCCCCccccccccccccc---cccCccchhhHHHHHHhCCCCCCCCCccc
Q 010130 264 YDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCR 310 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR 310 (517)
.++.|.||.+.-+....+ .|+..||..|+......-......||.|+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 567899998764432223 68899999999876542112357788875
No 102
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.41 E-value=0.33 Score=39.35 Aligned_cols=49 Identities=24% Similarity=0.522 Sum_probs=34.0
Q ss_pred CCCCCccccccccccccc---cccCccchhhHHHHHHhCCCCCCCCCccccC
Q 010130 264 YDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 312 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 312 (517)
.+..|.||...-.....+ .|...||..|+..=+..-+.....||.|+..
T Consensus 15 ~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 456799999765433333 6889999999975444433346789999764
No 103
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=75.15 E-value=0.55 Score=35.47 Aligned_cols=46 Identities=35% Similarity=0.786 Sum_probs=32.9
Q ss_pred CCCCCccccccccccccc---cccCccchhhHHHHHHhCCCCCCCCCccccC
Q 010130 264 YDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 312 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 312 (517)
.+..|.||.+. ...+ .|...||..|+..-+..-+.....||.|...
T Consensus 7 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 46789999864 2233 6889999999986554433346889999764
No 104
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.53 E-value=0.85 Score=35.63 Aligned_cols=46 Identities=30% Similarity=0.726 Sum_probs=31.4
Q ss_pred CCCccccccccccccc---cccCccchhhHHHHHHhCCCC-CCCCCcccc
Q 010130 266 DECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNE-MYSCPTCRK 311 (517)
Q Consensus 266 ~~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~~~~~-~~~CP~CR~ 311 (517)
..|.||...-.....+ .|...||..|+..=+..-+.. ...||.|+.
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 3688888643333344 688999999998655543333 578999975
No 105
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=72.85 E-value=0.91 Score=36.62 Aligned_cols=45 Identities=24% Similarity=0.621 Sum_probs=28.3
Q ss_pred cCCCCCccccccccccccc---c--cc-CccchhhHHHHHHhCCCCCCCCCc-ccc
Q 010130 263 AYDDECAICREPMAKAKKL---L--CN-HLFHLACLRSWLDQGLNEMYSCPT-CRK 311 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~~~l---~--C~-H~Fh~~Cl~~wl~~~~~~~~~CP~-CR~ 311 (517)
+....| ||...... ..+ . |. ..||..|+. +...+.....||. |+.
T Consensus 24 ~~~~yC-iC~~~~~g-~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSYG-PMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCSS-SEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCCC-CEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 344567 99874332 233 3 33 689999996 3333334689999 974
No 106
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.76 E-value=3 Score=31.69 Aligned_cols=26 Identities=19% Similarity=0.442 Sum_probs=21.7
Q ss_pred HHHHHHHhhCCCCChHHHHHHhhccC
Q 010130 480 AMAETVREVLPHMPEDLIFQDLQRTN 505 (517)
Q Consensus 480 ~~~~~v~~~~~~~~~~~i~~~~~~~~ 505 (517)
.+.++++..||.||+.||-+=+.+.+
T Consensus 12 qvfheLkQrFPEvPd~VVsqc~~qN~ 37 (75)
T 2dae_A 12 QVLHDLRQKFPEVPEVVVSRCMLQNN 37 (75)
T ss_dssp HHHHHHHHHSSSSCHHHHHHHHTTTT
T ss_pred HHHHHHHHhcccCcHHHHHHHHHHhc
Confidence 46799999999999999998666543
No 107
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=72.52 E-value=0.59 Score=37.53 Aligned_cols=51 Identities=18% Similarity=0.570 Sum_probs=35.3
Q ss_pred CCCCCccccccccc--cccc---cccCccchhhHHHHHHh----CCCCCCCCCccccCCc
Q 010130 264 YDDECAICREPMAK--AKKL---LCNHLFHLACLRSWLDQ----GLNEMYSCPTCRKPLF 314 (517)
Q Consensus 264 ~~~~C~IC~~~~~~--~~~l---~C~H~Fh~~Cl~~wl~~----~~~~~~~CP~CR~~~~ 314 (517)
.+..|.+|...-.. ...+ .|...||..|+..-+.. .+.....||.|+....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 46789999976432 2333 68899999999865542 2233689999987543
No 108
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=71.59 E-value=0.7 Score=36.15 Aligned_cols=45 Identities=33% Similarity=0.742 Sum_probs=29.3
Q ss_pred CCccccccccccccc---cccCccchhhHHHHHHhCCCCC-CCCCcccc
Q 010130 267 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEM-YSCPTCRK 311 (517)
Q Consensus 267 ~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~~~~~~-~~CP~CR~ 311 (517)
.|.+|...-.....+ .|...||..|+..-+...+... ..||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 355665543333344 5889999999987665544334 79999975
No 109
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=71.19 E-value=1 Score=37.72 Aligned_cols=45 Identities=29% Similarity=0.672 Sum_probs=31.4
Q ss_pred CCccccccccc-cccc---cccCccchhhHHHHHHhCCCCCCCCCcccc
Q 010130 267 ECAICREPMAK-AKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 311 (517)
Q Consensus 267 ~C~IC~~~~~~-~~~l---~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 311 (517)
.|.||.+.-.+ ...+ .|...||..|+..-+..-+.....||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 58888864322 2333 588999999997666554444689999975
No 110
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=70.84 E-value=1 Score=34.50 Aligned_cols=45 Identities=33% Similarity=0.750 Sum_probs=29.9
Q ss_pred CCccccccccccccc---cccCccchhhHHHHHHhCCCC-CCCCCcccc
Q 010130 267 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNE-MYSCPTCRK 311 (517)
Q Consensus 267 ~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~~~~~-~~~CP~CR~ 311 (517)
.|.||...-.....+ .|...||..|+..=+...+.+ ...||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 456776543333344 588999999998655544333 679999975
No 111
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=70.48 E-value=0.81 Score=33.80 Aligned_cols=43 Identities=26% Similarity=0.702 Sum_probs=28.8
Q ss_pred CCCCccccccccccccc---c--cc-CccchhhHHHHHHhCCCCCCCCCcccc
Q 010130 265 DDECAICREPMAKAKKL---L--CN-HLFHLACLRSWLDQGLNEMYSCPTCRK 311 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l---~--C~-H~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 311 (517)
+..| ||..... +..+ . |. ..||..|+. +...+.....||.|++
T Consensus 9 ~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 3456 9987643 3333 3 66 699999997 4444445689999975
No 112
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=70.22 E-value=1.1 Score=42.45 Aligned_cols=45 Identities=33% Similarity=0.750 Sum_probs=27.4
Q ss_pred CCccccccccccccc---cccCccchhhHHHHHHhCCCC-CCCCCcccc
Q 010130 267 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNE-MYSCPTCRK 311 (517)
Q Consensus 267 ~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~~~~~-~~~CP~CR~ 311 (517)
.|.+|...-.....+ .|...||..|+.+=+..-+.. ...||.|+.
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 577887542223333 688999999998655554433 578999975
No 113
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=69.74 E-value=0.54 Score=35.34 Aligned_cols=51 Identities=22% Similarity=0.554 Sum_probs=34.1
Q ss_pred cCCCCCccccccccc--cccc---cccCccchhhHHHHHHh---CCCCCCCCCccccCC
Q 010130 263 AYDDECAICREPMAK--AKKL---LCNHLFHLACLRSWLDQ---GLNEMYSCPTCRKPL 313 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~--~~~l---~C~H~Fh~~Cl~~wl~~---~~~~~~~CP~CR~~~ 313 (517)
..+..|.||...... ...+ .|.-.||..|+..-+.. .+.....||.|+...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 346789999976432 3333 68899999999754322 122368999997653
No 114
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=69.52 E-value=1.3 Score=33.29 Aligned_cols=48 Identities=23% Similarity=0.551 Sum_probs=30.2
Q ss_pred CCCCCccccccccccccc-----cccCccchhhHHH------HHHhCCCCCCCCCcccc
Q 010130 264 YDDECAICREPMAKAKKL-----LCNHLFHLACLRS------WLDQGLNEMYSCPTCRK 311 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~l-----~C~H~Fh~~Cl~~------wl~~~~~~~~~CP~CR~ 311 (517)
....|.+|..++.+.... .|.-.||..|+.- -+...+.....||.|++
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~~ 65 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMA 65 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHHC
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCccC
Confidence 356799999987654322 6889999999841 12211222478998863
No 115
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=69.37 E-value=1.6 Score=40.05 Aligned_cols=48 Identities=19% Similarity=0.501 Sum_probs=31.7
Q ss_pred CCCCccccccccccc----cc---cccCccchhhHHH------HHHhCC-CCCCCCCccccC
Q 010130 265 DDECAICREPMAKAK----KL---LCNHLFHLACLRS------WLDQGL-NEMYSCPTCRKP 312 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~----~l---~C~H~Fh~~Cl~~------wl~~~~-~~~~~CP~CR~~ 312 (517)
+..|+||...+.+.. .+ .|...||..|..- -+...+ .....||.|+..
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 457999998887553 33 5889999999742 111000 014899999875
No 116
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=68.38 E-value=3.4 Score=36.15 Aligned_cols=49 Identities=22% Similarity=0.473 Sum_probs=33.1
Q ss_pred cCCCCCccccccccccccccccCccchhhHHHHHHh-------CCCCCCCCCcccc
Q 010130 263 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQ-------GLNEMYSCPTCRK 311 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~-------~~~~~~~CP~CR~ 311 (517)
..++.|.+|.+.-+----=.|-..||..|+..=+.. .+.+...||.|+.
T Consensus 61 g~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 467889999876321111168899999999965521 2233689999974
No 117
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=65.74 E-value=1.1 Score=33.35 Aligned_cols=43 Identities=26% Similarity=0.718 Sum_probs=28.5
Q ss_pred CCCCccccccccccccc---c--cc-CccchhhHHHHHHhCCCCCCCCCcccc
Q 010130 265 DDECAICREPMAKAKKL---L--CN-HLFHLACLRSWLDQGLNEMYSCPTCRK 311 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l---~--C~-H~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 311 (517)
...| +|..... +..+ . |. ..||..|+. +...+.....||.|+.
T Consensus 11 ~~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCCC-CCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 3456 9988532 3333 3 55 799999997 3443344689999975
No 118
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=64.31 E-value=4 Score=33.89 Aligned_cols=49 Identities=24% Similarity=0.473 Sum_probs=33.8
Q ss_pred cCCCCCccccccccccccc-----cccCccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 263 AYDDECAICREPMAKAKKL-----LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~~~l-----~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
..++.|.+|.+. +..+ .|-..||..|+. +...+.....||.|+..+..+
T Consensus 13 ~~~~~C~~C~~~---G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 13 MHEDYCFQCGDG---GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp SSCSSCTTTCCC---SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCCCCCCcCCCC---CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 356789999843 2233 477899999997 555444467899998766443
No 119
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=61.41 E-value=1.5 Score=32.41 Aligned_cols=43 Identities=26% Similarity=0.709 Sum_probs=28.8
Q ss_pred CCCCcccccccccccccc-----cc-CccchhhHHHHHHhCCCCCCCCCcccc
Q 010130 265 DDECAICREPMAKAKKLL-----CN-HLFHLACLRSWLDQGLNEMYSCPTCRK 311 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~-----C~-H~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 311 (517)
...| ||...-. ...+. |. ..||..|+. +...+.....||.|+.
T Consensus 10 ~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 3456 8987643 33443 55 689999997 5544445789999965
No 120
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=58.62 E-value=1.5 Score=31.38 Aligned_cols=44 Identities=25% Similarity=0.563 Sum_probs=26.8
Q ss_pred CCcccccccccccc-c----cccCccchhhHHHHHHhCCCCCCCCCccc
Q 010130 267 ECAICREPMAKAKK-L----LCNHLFHLACLRSWLDQGLNEMYSCPTCR 310 (517)
Q Consensus 267 ~C~IC~~~~~~~~~-l----~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR 310 (517)
.|.+|..+..+... + .|...||..|+.--.....+....||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 47789887754322 2 47789999997521111001268999996
No 121
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=57.57 E-value=2.5 Score=34.48 Aligned_cols=44 Identities=20% Similarity=0.560 Sum_probs=29.9
Q ss_pred CCCccccccccccccc---cccCccchhhHHHHHHhCCCCCCCCCcccc
Q 010130 266 DECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 311 (517)
Q Consensus 266 ~~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 311 (517)
..| ||.........+ .|.-.||..|+..=... .++...||.|+.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~-~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQH-IPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTS-CCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccC-CCCCEECCCCcC
Confidence 346 887766555444 58899999998642222 234689999974
No 122
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=57.52 E-value=2 Score=32.59 Aligned_cols=45 Identities=27% Similarity=0.703 Sum_probs=29.8
Q ss_pred CCCCccccccccccccc---cccCccchhhHHHHHHhCCCCCCCCCcccc
Q 010130 265 DDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 311 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 311 (517)
...| ||.........+ .|...||..|+.---. ..++...||.|+.
T Consensus 19 ~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~-~~~~~~~C~~C~~ 66 (68)
T 3o70_A 19 LVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKS-NVPEVFVCQKCRD 66 (68)
T ss_dssp CCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTT-SCCSSCCCHHHHT
T ss_pred ceEe-ECCCcCCCCCEEECCCCCccccccccCcCcc-cCCCcEECCCCCC
Confidence 4567 998765533233 5889999999863221 2234689999975
No 123
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=56.75 E-value=6.5 Score=30.48 Aligned_cols=48 Identities=27% Similarity=0.657 Sum_probs=30.0
Q ss_pred CCCCccccccccc-cccc---cccCccchhhHHHHHHh-CCCCCCCCCccccCC
Q 010130 265 DDECAICREPMAK-AKKL---LCNHLFHLACLRSWLDQ-GLNEMYSCPTCRKPL 313 (517)
Q Consensus 265 ~~~C~IC~~~~~~-~~~l---~C~H~Fh~~Cl~~wl~~-~~~~~~~CP~CR~~~ 313 (517)
...| ||.....+ ...+ .|...||..|+.---.. .......||.|+..-
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 3456 89887642 2222 58899999998522111 112368999998754
No 124
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=54.41 E-value=8.5 Score=33.01 Aligned_cols=50 Identities=22% Similarity=0.437 Sum_probs=32.4
Q ss_pred cCCCCCccccccccccccccccCccchhhHHHH-----H-Hh-CCCCCCCCCccccC
Q 010130 263 AYDDECAICREPMAKAKKLLCNHLFHLACLRSW-----L-DQ-GLNEMYSCPTCRKP 312 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~w-----l-~~-~~~~~~~CP~CR~~ 312 (517)
..++.|.+|.+.-+-.--=.|-..||..|+..- + +. .+.+...|+.|+.+
T Consensus 55 g~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 55 GMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 456789999875221101168899999999864 2 21 12336899999653
No 125
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=53.77 E-value=1.9 Score=35.85 Aligned_cols=46 Identities=24% Similarity=0.581 Sum_probs=31.1
Q ss_pred CCccccccccccccc---cccCccchhhHHHHHHhCCCCCCCCCccccC
Q 010130 267 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 312 (517)
Q Consensus 267 ~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 312 (517)
.|.+|...-.+...+ .|...||..|+..-+..-+.....||.|+..
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 466776654433444 6889999999976554433346789999764
No 126
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=53.13 E-value=1.6 Score=33.34 Aligned_cols=47 Identities=19% Similarity=0.400 Sum_probs=30.5
Q ss_pred CCCCccccccccccc-cc---cccCccchhhHHHHHHhCCCCCCCCCccccC
Q 010130 265 DDECAICREPMAKAK-KL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 312 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~-~l---~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 312 (517)
...| ||.....+.. .+ .|...||..|+.---....+....||.|+..
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 3458 7987755442 33 5889999999853221122346899999763
No 127
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=52.91 E-value=9.4 Score=38.63 Aligned_cols=51 Identities=22% Similarity=0.448 Sum_probs=34.7
Q ss_pred CCCCcccccccccccc-ccccCccchhhHHHHHHhC-CCCCCCCCccccCCcCC
Q 010130 265 DDECAICREPMAKAKK-LLCNHLFHLACLRSWLDQG-LNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~-l~C~H~Fh~~Cl~~wl~~~-~~~~~~CP~CR~~~~~~ 316 (517)
...|++-...+..|.+ ..|.|.-|.+- ..|++.. ......||+|.+.+...
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl-~sfL~~~~~~~~W~CPIC~k~~~~~ 301 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDA-LWFLHSQLQIPTWQCPVCQIDIALE 301 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEH-HHHHHHHHHSCCCBCTTTCCBCCGG
T ss_pred eecCCCccccccccCcCCcCCCcceECH-HHHHHHhhcCCceeCCCCCcccCHH
Confidence 4679999999988866 48999855544 3344321 11268999998876543
No 128
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=52.60 E-value=16 Score=31.00 Aligned_cols=29 Identities=17% Similarity=0.541 Sum_probs=22.4
Q ss_pred CCCCcccccccccccc----ccccCccchhhHH
Q 010130 265 DDECAICREPMAKAKK----LLCNHLFHLACLR 293 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~----l~C~H~Fh~~Cl~ 293 (517)
-..|.+|...|..-.+ -.||++||..|..
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhC
Confidence 3479999999875432 2799999999964
No 129
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=51.58 E-value=5.2 Score=33.42 Aligned_cols=42 Identities=19% Similarity=0.467 Sum_probs=27.9
Q ss_pred CCCccccccccc------ccc-c---cccCccchhhHHHH------HHhCCCCCCCCCccc
Q 010130 266 DECAICREPMAK------AKK-L---LCNHLFHLACLRSW------LDQGLNEMYSCPTCR 310 (517)
Q Consensus 266 ~~C~IC~~~~~~------~~~-l---~C~H~Fh~~Cl~~w------l~~~~~~~~~CP~CR 310 (517)
+.|.+|+..-.. +.. + .|+..||..|+... .... ...||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~---~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTY---KWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHT---TCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCC---ccCccccC
Confidence 579999876421 112 2 69999999999743 2222 57888884
No 130
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=51.57 E-value=3.1 Score=37.41 Aligned_cols=48 Identities=25% Similarity=0.638 Sum_probs=30.7
Q ss_pred CCCCCcccccccccc-ccc---cccCccchhhHHHHHH-hCCCCCCCCCccccC
Q 010130 264 YDDECAICREPMAKA-KKL---LCNHLFHLACLRSWLD-QGLNEMYSCPTCRKP 312 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~-~~l---~C~H~Fh~~Cl~~wl~-~~~~~~~~CP~CR~~ 312 (517)
.+..| +|.....+. ..+ .|...||..|+.---. ........||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 34568 998875432 222 5889999999852211 112236899999864
No 131
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=51.28 E-value=3.6 Score=32.82 Aligned_cols=49 Identities=22% Similarity=0.425 Sum_probs=32.9
Q ss_pred cCCCCCccccccc--cccccc---cccCccchhhHHHHHHhCCCCCCCCCccccCC
Q 010130 263 AYDDECAICREPM--AKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 313 (517)
Q Consensus 263 ~~~~~C~IC~~~~--~~~~~l---~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~ 313 (517)
+.+..|.||.+.- .....+ .|.-.||..|+..-. -+.....||.|....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~--vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS--CCSSCCCCHHHHHHT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc--cCCCceECccccCcc
Confidence 4567899999753 112233 688899999997432 122368999997653
No 132
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=51.04 E-value=11 Score=31.14 Aligned_cols=43 Identities=21% Similarity=0.487 Sum_probs=28.3
Q ss_pred CCCCcccccccc-----cc-ccc---cccCccchhhHHH------HHHhCCCCCCCCCccc
Q 010130 265 DDECAICREPMA-----KA-KKL---LCNHLFHLACLRS------WLDQGLNEMYSCPTCR 310 (517)
Q Consensus 265 ~~~C~IC~~~~~-----~~-~~l---~C~H~Fh~~Cl~~------wl~~~~~~~~~CP~CR 310 (517)
...|.+|...-. .+ ..+ .|+..||..|+.. -+... ...||.|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~---~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKAL---RWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTS---CCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhcc---ccccccCC
Confidence 457999987531 12 222 6999999999952 22222 57888886
No 133
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=50.86 E-value=9.9 Score=32.80 Aligned_cols=49 Identities=14% Similarity=0.314 Sum_probs=27.3
Q ss_pred cCCCCCccccccccc--c---ccccccCccchhhHHHHHHhCCCCCCCCCcccc
Q 010130 263 AYDDECAICREPMAK--A---KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRK 311 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~--~---~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 311 (517)
..+..|++|...+.- . .-..|.|.+|..|-..--.........|-+|+.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 356789999999841 1 223677877777743210111111356666654
No 134
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=50.75 E-value=11 Score=38.10 Aligned_cols=51 Identities=18% Similarity=0.408 Sum_probs=34.4
Q ss_pred CCCCcccccccccccc-ccccCccchhhHHHHHHhC-CCCCCCCCccccCCcCC
Q 010130 265 DDECAICREPMAKAKK-LLCNHLFHLACLRSWLDQG-LNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~-l~C~H~Fh~~Cl~~wl~~~-~~~~~~CP~CR~~~~~~ 316 (517)
...|++-...+..|.+ ..|.|.-|.+- ..|++.. ......||+|.+.+...
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl-~sfL~~~~~~~~W~CPiC~k~~~~~ 267 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDA-ALYLQMNEKKPTWICPVCDKKAAYE 267 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEH-HHHHHHHHHSCCCBCTTTCSBCCGG
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCH-HHHHHHHhhCCCeECCCCCcccCHH
Confidence 4579999999988865 58999855443 3444321 11268999999877543
No 135
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=50.64 E-value=4 Score=31.42 Aligned_cols=47 Identities=30% Similarity=0.596 Sum_probs=29.2
Q ss_pred CCCCccccccccccccc---cccCccchhhHHHHHHh-----CCCCCCCCCccccC
Q 010130 265 DDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQ-----GLNEMYSCPTCRKP 312 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~-----~~~~~~~CP~CR~~ 312 (517)
...| ||.........+ .|...||..|+.--... ..+....||.|+..
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 3456 898876533333 58899999998421110 01126999999864
No 136
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=50.58 E-value=43 Score=26.60 Aligned_cols=47 Identities=19% Similarity=0.454 Sum_probs=33.9
Q ss_pred CCCCccccccccc---c-ccc---cccCccchhhHHHHHHhCCCCCCCCCccccCCc
Q 010130 265 DDECAICREPMAK---A-KKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 314 (517)
Q Consensus 265 ~~~C~IC~~~~~~---~-~~l---~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 314 (517)
...|.||-++... + ... .|+---|+.|..-=.+.. ++.||.|+....
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG---~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREG---TQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTS---CSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhcc---CccccccCCccc
Confidence 4689999998642 2 112 577788999987544443 689999998764
No 137
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=48.48 E-value=5.2 Score=30.58 Aligned_cols=48 Identities=23% Similarity=0.449 Sum_probs=32.0
Q ss_pred cCCCCCccccccc--cccccc---cccCccchhhHHHHHHhCCCCCCCCCccccC
Q 010130 263 AYDDECAICREPM--AKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 312 (517)
Q Consensus 263 ~~~~~C~IC~~~~--~~~~~l---~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 312 (517)
..+..|.||.+.- .....+ .|.-.||..|+..-. -+.....||.|+..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~--vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSS--CCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCc--CCCCCcCCccCcCc
Confidence 3467899998763 222333 688999999986421 12236899999753
No 138
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=44.68 E-value=2.7 Score=35.21 Aligned_cols=47 Identities=23% Similarity=0.574 Sum_probs=32.3
Q ss_pred CCccccccccccccc---cccCccchhhHHHHHHhCCCCCCCCCccccCC
Q 010130 267 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 313 (517)
Q Consensus 267 ~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~ 313 (517)
.|.||...-.....+ .|...||..|+..=+..-+.....||.|+...
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 588887754444444 68899999999865544333467899997643
No 139
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.36 E-value=16 Score=27.86 Aligned_cols=38 Identities=24% Similarity=0.433 Sum_probs=30.5
Q ss_pred CCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCc
Q 010130 265 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 314 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 314 (517)
...|+-|-+.+.......-+..||..| ..|-.|+.++.
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVKLRDRHRHPEC------------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCSSCEECSSCEECTTT------------TSCSSSCCCHH
T ss_pred CCccccCCCCccCcEEEECcceeCcCc------------CeeCCCCCCCC
Confidence 468999999887655556789999988 57999988874
No 140
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=40.87 E-value=15 Score=27.97 Aligned_cols=29 Identities=21% Similarity=0.499 Sum_probs=22.4
Q ss_pred CCCCcccccccccccc----ccccCccchhhHH
Q 010130 265 DDECAICREPMAKAKK----LLCNHLFHLACLR 293 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~----l~C~H~Fh~~Cl~ 293 (517)
+..|.+|...|..-.+ -.||++||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 3579999999875432 2799999999963
No 141
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.88 E-value=16 Score=28.59 Aligned_cols=40 Identities=15% Similarity=0.409 Sum_probs=31.8
Q ss_pred CCCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 264 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
....|+-|-+.+.......-|..||..| ..|-.|+.++..
T Consensus 24 ~~~~C~~C~~~I~~~~v~a~~~~~H~~C------------F~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIRGPFLVALGKSWHPEE------------FNCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCCSCEEEETTEEECTTT------------CBCSSSCCBCSS
T ss_pred CCCCCccCCCEecceEEEECCccccccC------------CccCCCCCCCCC
Confidence 3467999999887555557789999988 589999988764
No 142
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.09 E-value=20 Score=26.38 Aligned_cols=40 Identities=23% Similarity=0.452 Sum_probs=30.7
Q ss_pred CCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 265 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
...|..|-+.+.......-+..||..| ..|-.|+.++...
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIGRVIKAMNNSWHPEC------------FRCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCSCCEEETTEEECTTT------------SBCSSSCCBCSSS
T ss_pred CCcCccCCCEecceEEEECcccccccC------------CEeCCCCCcCCCC
Confidence 457999999887555456788899988 5799999887543
No 143
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.69 E-value=21 Score=26.21 Aligned_cols=39 Identities=26% Similarity=0.705 Sum_probs=30.3
Q ss_pred CCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 265 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
...|+.|-+.+.......-+..||..| ..|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 43 (70)
T 2d8z_A 5 SSGCVQCKKPITTGGVTYREQPWHKEC------------FVCTACRKQLSG 43 (70)
T ss_dssp CCBCSSSCCBCCSSEEESSSSEEETTT------------SBCSSSCCBCTT
T ss_pred CCCCcccCCeeccceEEECccccCCCC------------CccCCCCCcCCc
Confidence 457999999887655456788999988 579999988743
No 144
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=38.67 E-value=25 Score=27.33 Aligned_cols=39 Identities=21% Similarity=0.389 Sum_probs=31.1
Q ss_pred CCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 265 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
...|.-|-+.+.......-+..||..| ..|-.|+.++..
T Consensus 25 ~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 63 (89)
T 1x64_A 25 MPLCDKCGSGIVGAVVKARDKYRHPEC------------FVCADCNLNLKQ 63 (89)
T ss_dssp CCBCTTTCCBCCSCCEESSSCEECTTT------------CCCSSSCCCTTT
T ss_pred CCCcccCCCEecccEEEECCceECccC------------CEecCCCCCCCC
Confidence 457999999887655456788999988 579999988754
No 145
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=38.12 E-value=5.3 Score=33.87 Aligned_cols=44 Identities=20% Similarity=0.491 Sum_probs=30.1
Q ss_pred CCCCcccccccccccc----ccccCccchhhHHHHHHhCCCCCCCCCccccC
Q 010130 265 DDECAICREPMAKAKK----LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 312 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~----l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 312 (517)
...|..|...|..-.+ -.||.+||..|....... ...|-.|-..
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~----vRVC~~C~~~ 66 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNG----PRLCLLCQRF 66 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC--------CCEEHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCC----ceECHHHHHH
Confidence 3579999999875432 379999999997654433 4678888553
No 146
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=37.81 E-value=6.2 Score=30.58 Aligned_cols=47 Identities=21% Similarity=0.523 Sum_probs=29.4
Q ss_pred CCCCccccccccccccc-----cccCccchhhHHHHHHh-----CCCCCCCCCccccC
Q 010130 265 DDECAICREPMAKAKKL-----LCNHLFHLACLRSWLDQ-----GLNEMYSCPTCRKP 312 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l-----~C~H~Fh~~Cl~~wl~~-----~~~~~~~CP~CR~~ 312 (517)
...| ||.........+ .|...||..|+.---.. ..+....||.|+..
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 3457 898874433222 58899999998521111 11236899999864
No 147
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=37.49 E-value=17 Score=28.46 Aligned_cols=30 Identities=17% Similarity=0.351 Sum_probs=23.2
Q ss_pred CCCCcccccccccccc----ccccCccchhhHHH
Q 010130 265 DDECAICREPMAKAKK----LLCNHLFHLACLRS 294 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~----l~C~H~Fh~~Cl~~ 294 (517)
...|.+|...|..-.+ -.||++||..|...
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 4579999999875432 37999999999643
No 148
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=36.94 E-value=4 Score=30.76 Aligned_cols=44 Identities=25% Similarity=0.585 Sum_probs=26.6
Q ss_pred CCccccccccccccc-----cccCccchhhHHHHH----HhCCCCCCCCCcccc
Q 010130 267 ECAICREPMAKAKKL-----LCNHLFHLACLRSWL----DQGLNEMYSCPTCRK 311 (517)
Q Consensus 267 ~C~IC~~~~~~~~~l-----~C~H~Fh~~Cl~~wl----~~~~~~~~~CP~CR~ 311 (517)
.| ||.........+ .|...||..|+.--- ....+....||.||.
T Consensus 12 ~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 12 RC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred Ee-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 46 797665554444 377899999973100 001123578999974
No 149
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.71 E-value=27 Score=26.08 Aligned_cols=39 Identities=15% Similarity=0.384 Sum_probs=30.7
Q ss_pred CCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 265 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
...|+-|-..+.......-+..||..| ..|-.|..++..
T Consensus 5 ~~~C~~C~~~I~~~~v~a~~~~wH~~C------------F~C~~C~~~L~~ 43 (73)
T 1wig_A 5 SSGCDSCEKYITGRVLEAGEKHYHPSC------------ALCVRCGQMFAE 43 (73)
T ss_dssp CCSCSSSCCCCSSCCBCCSSCCBCTTT------------SCCSSSCCCCCS
T ss_pred cCCcccCCCEecCeeEEeCCCCCCCCc------------CEeCCCCCCCCC
Confidence 457999999887655557788999988 579999988763
No 150
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.22 E-value=25 Score=25.85 Aligned_cols=39 Identities=26% Similarity=0.630 Sum_probs=30.0
Q ss_pred CCCCcccccccccc--ccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 265 DDECAICREPMAKA--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 265 ~~~C~IC~~~~~~~--~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
...|+-|-+.+... +...-|..||..| ..|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEYGGQTWHEHC------------FLCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECSTTCCEETTT------------CBCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEEEECccccCccc------------CeECCCCCcCCC
Confidence 45799999998843 3345788999988 579999888754
No 151
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=36.16 E-value=18 Score=28.71 Aligned_cols=30 Identities=20% Similarity=0.514 Sum_probs=23.2
Q ss_pred CCCCcccccccccccc----ccccCccchhhHHH
Q 010130 265 DDECAICREPMAKAKK----LLCNHLFHLACLRS 294 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~----l~C~H~Fh~~Cl~~ 294 (517)
...|.+|...|..-.+ -.||++||..|...
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 4579999999874432 37999999999754
No 152
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.86 E-value=28 Score=26.44 Aligned_cols=39 Identities=21% Similarity=0.502 Sum_probs=31.0
Q ss_pred CCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 265 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
...|+-|-+.+.......-|..||..| ..|-.|+.++..
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~C------------F~C~~C~~~L~~ 53 (79)
T 2cor_A 15 KYICQKCHAIIDEQPLIFKNDPYHPDH------------FNCANCGKELTA 53 (79)
T ss_dssp CCBCTTTCCBCCSCCCCCSSSCCCTTT------------SBCSSSCCBCCT
T ss_pred CCCCccCCCEecceEEEECcceeCCCC------------CEeCCCCCccCC
Confidence 467999999888555556788999988 589999988764
No 153
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.77 E-value=29 Score=26.27 Aligned_cols=39 Identities=18% Similarity=0.437 Sum_probs=30.7
Q ss_pred CCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 265 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
...|+.|-+.+.+.....-+..||..| ..|-.|..++..
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 53 (81)
T 1x6a_A 15 GEFCHGCSLLMTGPFMVAGEFKYHPEC------------FACMSCKVIIED 53 (81)
T ss_dssp SCBCTTTCCBCCSCCBCCTTCCBCTTS------------CBCTTTCCBCCT
T ss_pred CCcCccCCCCcCceEEEECCceecccc------------CCccCCCCccCC
Confidence 457999999888555556788999988 589999988754
No 154
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=35.75 E-value=19 Score=26.15 Aligned_cols=39 Identities=23% Similarity=0.601 Sum_probs=29.9
Q ss_pred CCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 265 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
...|+.|-+.+.......-|..||..| ..|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIEGRVVNAMGKQWHVEH------------FVCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECCSCEECCTTSBEETTT------------CBCTTTCCBCSS
T ss_pred CCCCcccCCEecceEEEECccccccCc------------CEECCCCCCCCC
Confidence 457999999887544446788999988 589999988753
No 155
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.60 E-value=22 Score=26.68 Aligned_cols=39 Identities=26% Similarity=0.489 Sum_probs=30.2
Q ss_pred CCCCcccccccccc-ccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 265 DDECAICREPMAKA-KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 265 ~~~C~IC~~~~~~~-~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
...|+.|-+.+... ....-+..||..| ..|..|+.++..
T Consensus 9 ~~~C~~C~~~I~~~~~v~a~~~~~H~~C------------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSSLGKDWHKFC------------LKCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEETTEEEETTT------------CBCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEEECCeEeeCCC------------CCCCCCCCccCC
Confidence 46799999988743 3346788999988 589999988764
No 156
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=35.58 E-value=18 Score=28.12 Aligned_cols=29 Identities=21% Similarity=0.653 Sum_probs=22.6
Q ss_pred CCCCcccccccccccc----ccccCccchhhHH
Q 010130 265 DDECAICREPMAKAKK----LLCNHLFHLACLR 293 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~----l~C~H~Fh~~Cl~ 293 (517)
...|.+|...|..-.+ -.||.+||..|..
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 51 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSS 51 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGC
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhC
Confidence 3479999999875432 3799999999974
No 157
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.51 E-value=6.7 Score=29.84 Aligned_cols=44 Identities=25% Similarity=0.688 Sum_probs=27.4
Q ss_pred CCCcccccccccccccc-----c-cCccchhhHHHHHHhCCCCCCCCCccccCC
Q 010130 266 DECAICREPMAKAKKLL-----C-NHLFHLACLRSWLDQGLNEMYSCPTCRKPL 313 (517)
Q Consensus 266 ~~C~IC~~~~~~~~~l~-----C-~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~ 313 (517)
..| ||.... ....+. | ...||..|+. +...+.....||.|+...
T Consensus 7 ~yC-~C~~~~-~g~MI~CD~cdC~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 7 GYC-ICNQVS-YGEMVGCDNQDCPIEWFHYGCVG--LTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CCS-TTSCCC-CSSEECCSCTTCSCCCEEHHHHT--CSSCCSSCCCCHHHHHHH
T ss_pred eEE-EcCCCC-CCCEeEeCCCCCCccCCcccccc--cCcCCCCCEECCCCCccc
Confidence 345 587753 233333 3 2689999996 333334468999997653
No 158
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=35.13 E-value=5.5 Score=28.26 Aligned_cols=41 Identities=27% Similarity=0.735 Sum_probs=25.8
Q ss_pred cccccccccccc---cccCccchhhHHHHHHhCCCCCCCCCcccc
Q 010130 270 ICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 311 (517)
Q Consensus 270 IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 311 (517)
||.........+ .|+..||..|+.---. ..++...||.|+.
T Consensus 8 ~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~-~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNECHTWIHLSCAKIRKS-NVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECTTTCCEEETTTTTCCGG-GCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcCCCCccccccccCCCcc-cCCCcEECcCCCC
Confidence 676654432223 4889999999853222 2234789999975
No 159
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=34.66 E-value=38 Score=31.59 Aligned_cols=30 Identities=23% Similarity=0.596 Sum_probs=23.3
Q ss_pred CCCCcccccccccccc----ccccCccchhhHHH
Q 010130 265 DDECAICREPMAKAKK----LLCNHLFHLACLRS 294 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~----l~C~H~Fh~~Cl~~ 294 (517)
+..|.+|...|.--.+ -.||++||..|-..
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 4689999999874432 37999999999653
No 160
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.61 E-value=21 Score=26.12 Aligned_cols=38 Identities=24% Similarity=0.635 Sum_probs=29.5
Q ss_pred CCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCc
Q 010130 265 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 314 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 314 (517)
...|+-|-+.+.......-+..||..| ..|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITSGGITYQDQPWHADC------------FVCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCTTCEEETTEEECTTT------------TBCTTTCCBCT
T ss_pred cCCCcccCCEeCcceEEECccccccCc------------CEECCCCCCCC
Confidence 457999998887544446788899988 57999998875
No 161
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.55 E-value=18 Score=28.21 Aligned_cols=29 Identities=24% Similarity=0.465 Sum_probs=22.2
Q ss_pred CCCCcccccccccccc----ccccCccchhhHH
Q 010130 265 DDECAICREPMAKAKK----LLCNHLFHLACLR 293 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~----l~C~H~Fh~~Cl~ 293 (517)
-..|.+|...|..-.+ -.||.+||..|..
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 3579999999865433 3799999999953
No 162
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=34.21 E-value=16 Score=34.07 Aligned_cols=29 Identities=21% Similarity=0.500 Sum_probs=22.6
Q ss_pred CCCCcccccccccccc----ccccCccchhhHH
Q 010130 265 DDECAICREPMAKAKK----LLCNHLFHLACLR 293 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~----l~C~H~Fh~~Cl~ 293 (517)
+..|.+|...|.--.+ -.||++||..|..
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 5789999999874322 3799999999964
No 163
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.11 E-value=27 Score=26.51 Aligned_cols=40 Identities=23% Similarity=0.588 Sum_probs=30.5
Q ss_pred CCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 265 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
...|+.|-+.+.......-+..||..| ..|-.|+.++...
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~wH~~C------------F~C~~C~~~L~~~ 54 (81)
T 1v6g_A 15 GTRCFSCDQFIEGEVVSALGKTYHPDC------------FVCAVCRLPFPPG 54 (81)
T ss_dssp CCBCTTTCCBCCSCCEEETTEEECTTT------------SSCSSSCCCCCSS
T ss_pred CCcCccccCEeccceEEECCceeCccC------------CccccCCCCCCCC
Confidence 457999999887544446788999988 5799998887543
No 164
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=33.40 E-value=18 Score=28.64 Aligned_cols=29 Identities=28% Similarity=0.526 Sum_probs=22.8
Q ss_pred CCCCcccccccccccc----ccccCccchhhHH
Q 010130 265 DDECAICREPMAKAKK----LLCNHLFHLACLR 293 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~----l~C~H~Fh~~Cl~ 293 (517)
...|.+|...|..-.+ -.||++||..|..
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 41 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLS 41 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSC
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcC
Confidence 4579999999875433 3799999999964
No 165
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.39 E-value=25 Score=26.00 Aligned_cols=38 Identities=24% Similarity=0.637 Sum_probs=29.3
Q ss_pred CCCCccccccccc----cccccccCccchhhHHHHHHhCCCCCCCCCccccCCc
Q 010130 265 DDECAICREPMAK----AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 314 (517)
Q Consensus 265 ~~~C~IC~~~~~~----~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 314 (517)
...|+-|-+.+.. .....-+..||..| ..|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~C------------F~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDC------------FNCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEECTTT------------CBCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceEEECCcccCccc------------CEeccCCCcCC
Confidence 4579999998875 33335788999988 58999998875
No 166
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=32.89 E-value=16 Score=29.65 Aligned_cols=12 Identities=33% Similarity=0.971 Sum_probs=11.1
Q ss_pred cchhhHHHHHHh
Q 010130 287 FHLACLRSWLDQ 298 (517)
Q Consensus 287 Fh~~Cl~~wl~~ 298 (517)
||+.|+..|+..
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999976
No 167
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=32.80 E-value=16 Score=29.59 Aligned_cols=12 Identities=42% Similarity=0.974 Sum_probs=11.0
Q ss_pred cchhhHHHHHHh
Q 010130 287 FHLACLRSWLDQ 298 (517)
Q Consensus 287 Fh~~Cl~~wl~~ 298 (517)
||+.|+..|+..
T Consensus 42 FCRNCLskWy~~ 53 (104)
T 3fyb_A 42 FCRNCLAKWLME 53 (104)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999975
No 168
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=31.98 E-value=24 Score=29.04 Aligned_cols=29 Identities=24% Similarity=0.550 Sum_probs=18.0
Q ss_pred cccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 278 AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 278 ~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
++...||+.|. ........||.|+..-..
T Consensus 68 ~~C~~CG~~F~---------~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 68 AQCRKCGFVFK---------AEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp CBBTTTCCBCC---------CCSSCCSSCSSSCCCCBC
T ss_pred cChhhCcCeec---------ccCCCCCCCcCCCCCccC
Confidence 34456888881 111124799999987543
No 169
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.95 E-value=24 Score=26.45 Aligned_cols=38 Identities=21% Similarity=0.662 Sum_probs=29.6
Q ss_pred CCCCccccccccc----cccccccCccchhhHHHHHHhCCCCCCCCCccccCCc
Q 010130 265 DDECAICREPMAK----AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 314 (517)
Q Consensus 265 ~~~C~IC~~~~~~----~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 314 (517)
...|+.|-+.+.. .....-+..||..| ..|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~C------------F~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICFQDSQWHSEC------------FNCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEETTEEEEGGG------------CBCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCceeEEECCcccCccc------------CChhhCCCcCC
Confidence 4579999998875 33446788899998 58999988875
No 170
>3n00_B N-COR1, N-COR, nuclear receptor corepressor 1; reverba ncorid1, anti-parallel B-sheet, transcription regula; 2.60A {Homo sapiens}
Probab=31.09 E-value=9.6 Score=22.00 Aligned_cols=16 Identities=31% Similarity=0.360 Sum_probs=12.6
Q ss_pred hCCCCChHHHHHHhhc.....
Q 010130 488 VLPHMPEDLIFQDLQR..... 503 (517)
Q Consensus 488 ~~~~~~~~~i~~~~~~..... 503 (517)
.+++++.+||.||+.|
T Consensus 6 t~~~~i~eVitqd~~r..... 21 (21)
T 3n00_B 6 TLADHICQIITQDFARxxxxx 26 (26)
T ss_pred ecHHHHHHHHHHHhcC.....
Confidence 3567789999999864
No 171
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=30.82 E-value=22 Score=26.62 Aligned_cols=30 Identities=30% Similarity=0.556 Sum_probs=22.3
Q ss_pred CCCCCccccccccccccccc-cCccchhhHHH
Q 010130 264 YDDECAICREPMAKAKKLLC-NHLFHLACLRS 294 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~~l~C-~H~Fh~~Cl~~ 294 (517)
...-|.||.++ ..-+-+.| |-+||..|.++
T Consensus 7 e~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE 37 (67)
T 2d8v_A 7 GLPWCCICNED-ATLRCAGCDGDLYCARCFRE 37 (67)
T ss_dssp CCSSCTTTCSC-CCEEETTTTSEEECSSHHHH
T ss_pred CCCeeEEeCCC-CeEEecCCCCceehHHHHHH
Confidence 34579999998 33345678 78999999654
No 172
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=30.81 E-value=10 Score=37.45 Aligned_cols=46 Identities=17% Similarity=0.336 Sum_probs=30.5
Q ss_pred cCCCCCccccccccccccc----ccc--CccchhhHHHHHHhCCCCCCCCCccccC
Q 010130 263 AYDDECAICREPMAKAKKL----LCN--HLFHLACLRSWLDQGLNEMYSCPTCRKP 312 (517)
Q Consensus 263 ~~~~~C~IC~~~~~~~~~l----~C~--H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 312 (517)
.....|++|-..-...+.. .=| +.+|.-|-..|--. ...||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~----R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV----RIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC----TTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeec----CcCCcCCCCC
Confidence 3467899998875433211 122 56677788888665 5899999764
No 173
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.72 E-value=29 Score=26.32 Aligned_cols=38 Identities=24% Similarity=0.668 Sum_probs=29.9
Q ss_pred CCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCc
Q 010130 265 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 314 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 314 (517)
...|+-|-+.+.+.....-+..||..| ..|..|..++.
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~ 52 (81)
T 2dlo_A 15 LEKCATCSQPILDRILRAMGKAYHPGC------------FTCVVCHRGLD 52 (81)
T ss_dssp CCBCTTTCCBCCSCCEEETTEEECTTT------------CBCSSSCCBCT
T ss_pred CCccccCCCeecceeEEECCccccHHh------------cCcccCCCccC
Confidence 457999998887554446788999988 58999998875
No 174
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=27.70 E-value=11 Score=27.74 Aligned_cols=33 Identities=27% Similarity=0.640 Sum_probs=23.3
Q ss_pred CCCcccccccccc-----cccc---ccCccchhhHHHHHHh
Q 010130 266 DECAICREPMAKA-----KKLL---CNHLFHLACLRSWLDQ 298 (517)
Q Consensus 266 ~~C~IC~~~~~~~-----~~l~---C~H~Fh~~Cl~~wl~~ 298 (517)
..|+-|...++.. +.-. |++.||..|..+|-..
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 4688888777642 1222 8899999998888654
No 175
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.70 E-value=39 Score=25.42 Aligned_cols=40 Identities=20% Similarity=0.603 Sum_probs=30.5
Q ss_pred CCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 265 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
...|+.|-+.+.+.....-+..||..| ..|-.|+.++...
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~C------------F~C~~C~~~L~~~ 54 (80)
T 1x3h_A 15 SPKCGGCNRPVLENYLSAMDTVWHPEC------------FVCGDCFTSFSTG 54 (80)
T ss_dssp SCBCTTTCCBCCSSCEEETTEEECTTT------------CBCSSSCCBSCSS
T ss_pred CCccccCCCeecceeEEECCCeEecCc------------CChhhCCCCCCCC
Confidence 357999998887654456778899988 5899999887543
No 176
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=27.65 E-value=4.4 Score=32.84 Aligned_cols=41 Identities=22% Similarity=0.450 Sum_probs=27.6
Q ss_pred CCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCc
Q 010130 265 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 314 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 314 (517)
+..|++|..+++.. =++.+|..|-..... ...||.|.+++.
T Consensus 32 ~~~CP~Cq~eL~~~----g~~~hC~~C~~~f~~-----~a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLDQD----NGHARCRSCGEFIEM-----KALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEEEE----TTEEEETTTCCEEEE-----EEECTTTCSBCE
T ss_pred cccCccCCCcceec----CCEEECccccchhhc-----cccCcchhhHHH
Confidence 46899999887632 234457777543222 478999998873
No 177
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=27.33 E-value=13 Score=38.06 Aligned_cols=49 Identities=16% Similarity=0.275 Sum_probs=0.0
Q ss_pred CCCCcccccccccccc----ccccCccchhhHHHHHHhCC---CCCCCCCccccCC
Q 010130 265 DDECAICREPMAKAKK----LLCNHLFHLACLRSWLDQGL---NEMYSCPTCRKPL 313 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~----l~C~H~Fh~~Cl~~wl~~~~---~~~~~CP~CR~~~ 313 (517)
...|.+|...|..-.+ -.||++||..|......-+. .....|-.|-..+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 4579999998864322 37999999999876542211 1135666665443
No 178
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.28 E-value=53 Score=25.02 Aligned_cols=41 Identities=34% Similarity=0.800 Sum_probs=30.3
Q ss_pred CCCCCccccccccccc-cccccCccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 264 YDDECAICREPMAKAK-KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 264 ~~~~C~IC~~~~~~~~-~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
....|+.|-+.+.... ...-+..||..| ..|-.|+.++...
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a~~~~wH~~C------------F~C~~C~~~L~~~ 55 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCVNGHFFHRSC------------FRCHTCEATLWPG 55 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCBTTBCCBTTT------------CBCSSSCCBCCTT
T ss_pred CCCCCcccCCCcccceEEEECCCeeCCCc------------CEEcCCCCCcCCC
Confidence 3567999999885443 335678999998 5799998877543
No 179
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.25 E-value=36 Score=25.59 Aligned_cols=38 Identities=24% Similarity=0.654 Sum_probs=29.7
Q ss_pred CCCCccccccccccccccccCccchhhHHHHHHhCCCCCCCCCccccCCc
Q 010130 265 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 314 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 314 (517)
...|+.|-+.+.......-+..||..| ..|-.|+.++.
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~C------------F~C~~C~~~L~ 52 (80)
T 2cuq_A 15 APRCARCSKTLTQGGVTYRDQPWHREC------------LVCTGCQTPLA 52 (80)
T ss_dssp SCCCTTTCCCCCSCCEESSSSEECTTT------------CBCSSSCCBCT
T ss_pred CCcCCCCCCEecCcEEEECCchhhhhh------------CCcccCCCcCC
Confidence 457999998887655456788899988 57999998874
No 180
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.01 E-value=36 Score=24.97 Aligned_cols=40 Identities=20% Similarity=0.595 Sum_probs=30.1
Q ss_pred CCCCcccccccccc--ccccccCccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 265 DDECAICREPMAKA--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 265 ~~~C~IC~~~~~~~--~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
...|+.|-+.+... ....-|..||..| ..|-.|+.++...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~~ 46 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEYKGSSWHETC------------FICHRCQQPIGTK 46 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEETTEEEETTT------------TCCSSSCCCCCSS
T ss_pred CCCCccCCCcccCCceEEEECcCeecccC------------CcccccCCccCCC
Confidence 45799999988753 3335788899988 5799998887543
No 181
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.68 E-value=44 Score=25.26 Aligned_cols=40 Identities=18% Similarity=0.595 Sum_probs=30.0
Q ss_pred CCCCcccccccccc--ccccccCccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 265 DDECAICREPMAKA--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 265 ~~~C~IC~~~~~~~--~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
...|+.|-+.+... ....-+..||..| ..|-.|+.++...
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEYKGTVWHKDC------------FTCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEECSSCEEETTT------------CCCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceEEEECcccccccc------------CchhhCCCccCCC
Confidence 45799999988743 3345688899988 5799999887543
No 182
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=26.43 E-value=32 Score=25.68 Aligned_cols=38 Identities=26% Similarity=0.579 Sum_probs=25.6
Q ss_pred CCcccccccccc-ccccccCccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 267 ECAICREPMAKA-KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 267 ~C~IC~~~~~~~-~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
.|+.|-+.+... ....-|..||..| ..|..|+.++...
T Consensus 2 ~C~~C~~~I~~~~~v~a~~~~~H~~C------------F~C~~C~~~L~~~ 40 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTSLGKDWHRPC------------LKCEKCGKTLTSG 40 (76)
T ss_dssp BCTTTSSBCCGGGEEEETTEEEETTT------------CBCTTTCCBCCTT
T ss_pred cCCCCCCEEECceEEEECCccccCCC------------CCccccCccCCCC
Confidence 477888776633 2334577888877 5788888876543
No 183
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=25.49 E-value=73 Score=27.91 Aligned_cols=46 Identities=20% Similarity=0.494 Sum_probs=30.4
Q ss_pred CCCCCccccccccc---c--ccccccCccchhhHHHHHHhCCCCCCCCCccccC
Q 010130 264 YDDECAICREPMAK---A--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 312 (517)
Q Consensus 264 ~~~~C~IC~~~~~~---~--~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 312 (517)
.+..|++|...|.- . .-..|.|.+|..|-. |... .....|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~--~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPE--EQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSS--SSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCC--CCcEeeHHHHHH
Confidence 36789999998742 1 224799999999962 3322 124778888653
No 184
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.42 E-value=47 Score=24.36 Aligned_cols=38 Identities=29% Similarity=0.737 Sum_probs=29.0
Q ss_pred CCCCcccccccccc--ccccccCccchhhHHHHHHhCCCCCCCCCccccCCc
Q 010130 265 DDECAICREPMAKA--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 314 (517)
Q Consensus 265 ~~~C~IC~~~~~~~--~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 314 (517)
...|+.|-+.+... ....-+..||..| ..|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVALDRVFHVGC------------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEECSSSEECTTT------------CBCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEEECCCeEcccC------------CcccccCCcCC
Confidence 45799999887642 3446688999988 57999998874
No 185
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=25.13 E-value=27 Score=28.62 Aligned_cols=48 Identities=23% Similarity=0.577 Sum_probs=31.2
Q ss_pred CCCcccccccccc-ccc----cccCccchhhHHHH------HHhCCCCCCCCCccccCC
Q 010130 266 DECAICREPMAKA-KKL----LCNHLFHLACLRSW------LDQGLNEMYSCPTCRKPL 313 (517)
Q Consensus 266 ~~C~IC~~~~~~~-~~l----~C~H~Fh~~Cl~~w------l~~~~~~~~~CP~CR~~~ 313 (517)
..|.||...+.+. ..+ .|...||..|+.-- +...+.....||.|+..-
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 4699999887443 222 57899999998411 111112258999998753
No 186
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=24.41 E-value=31 Score=28.89 Aligned_cols=38 Identities=24% Similarity=0.497 Sum_probs=30.4
Q ss_pred CCCCccccccccccc-cccccCccchhhHHHHHHhCCCCCCCCCccccCCc
Q 010130 265 DDECAICREPMAKAK-KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 314 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~-~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 314 (517)
...|+-|-+.+.... ...-+..||..| ..|-.|+.++.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~C------------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRC------------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTT------------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccc------------cCcCcCCCccc
Confidence 357999999887653 446788999998 58999998875
No 187
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.89 E-value=46 Score=24.70 Aligned_cols=40 Identities=25% Similarity=0.599 Sum_probs=30.1
Q ss_pred CCCCccccccccc-cc-cccccCccchhhHHHHHHhCCCCCCCCCccccCCcCC
Q 010130 265 DDECAICREPMAK-AK-KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 316 (517)
Q Consensus 265 ~~~C~IC~~~~~~-~~-~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 316 (517)
...|+-|-+.+.. .. ...-|..||..| ..|-.|+.++...
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~~ 52 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNSNGELYHEQC------------FVCAQCFQQFPEG 52 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEETTEEECTTT------------CCCTTTCCCCGGG
T ss_pred CCCchhcCCccCCCceEEEeCccEecccc------------CeECCCCCCCCCC
Confidence 5689999998863 22 236788999988 5799999887543
No 188
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=23.75 E-value=51 Score=20.47 Aligned_cols=26 Identities=27% Similarity=0.636 Sum_probs=17.8
Q ss_pred CCCccccccccccccc-cccCccchhh
Q 010130 266 DECAICREPMAKAKKL-LCNHLFHLAC 291 (517)
Q Consensus 266 ~~C~IC~~~~~~~~~l-~C~H~Fh~~C 291 (517)
+.|+.|-.......++ .-|..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNCLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCCSSSSCCCGGG
T ss_pred CcCCccCCEEecceeEEECCeEecccC
Confidence 4688888776554333 4567888887
No 189
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.88 E-value=48 Score=25.24 Aligned_cols=38 Identities=29% Similarity=0.735 Sum_probs=29.2
Q ss_pred CCCCccccccccccc-cccccCccchhhHHHHHHhCCCCCCCCCccccCCc
Q 010130 265 DDECAICREPMAKAK-KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 314 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~-~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 314 (517)
...|+-|-+.+.+.. ...-+..||..| ..|-.|+.++.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~wH~~C------------F~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLALDKQWHVSC------------FKCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEETTEEECTTT------------CBCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEEECCccccccc------------CCcCcCCCCcC
Confidence 467999999886443 335678899988 58999998774
No 190
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=22.33 E-value=51 Score=27.32 Aligned_cols=37 Identities=27% Similarity=0.740 Sum_probs=28.4
Q ss_pred CCcccccccccc--ccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 267 ECAICREPMAKA--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 267 ~C~IC~~~~~~~--~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
.|+.|-..+... ....-+..||..| ..|-.|.+++..
T Consensus 10 ~C~~C~~~I~~~e~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 48 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRVKDKVYHLEC------------FKCAACQKHFSV 48 (123)
T ss_dssp CCSSSSCCCCTTCCCCCCSSCCCCTTT------------CBCTTTCCBCCT
T ss_pred cccCCCCeecCCceEEEECCccccccc------------CccccCCCCCCC
Confidence 799999988742 3335688999988 589999988743
No 191
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=21.82 E-value=1.1e+02 Score=25.09 Aligned_cols=30 Identities=23% Similarity=0.609 Sum_probs=19.2
Q ss_pred ccCccchhhHH------HHHHh-CCCCCCCCCccccC
Q 010130 283 CNHLFHLACLR------SWLDQ-GLNEMYSCPTCRKP 312 (517)
Q Consensus 283 C~H~Fh~~Cl~------~wl~~-~~~~~~~CP~CR~~ 312 (517)
|+..||..|.. .-+.+ .......||.|-..
T Consensus 8 c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~ 44 (140)
T 2ku7_A 8 CDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 44 (140)
T ss_dssp CSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTT
T ss_pred CCCccCCcccccCHHHHHHHhhccccceeeCcccccc
Confidence 78899999962 12222 11225899999654
No 192
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=21.12 E-value=20 Score=23.30 Aligned_cols=16 Identities=19% Similarity=0.453 Sum_probs=11.5
Q ss_pred CCCCcccccccccccc
Q 010130 265 DDECAICREPMAKAKK 280 (517)
Q Consensus 265 ~~~C~IC~~~~~~~~~ 280 (517)
+-.|++|+..+..+..
T Consensus 5 GFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 5 GFICPQCMKSLGSADE 20 (34)
T ss_dssp EEECTTTCCEESSHHH
T ss_pred ccCCcHHHHHcCCHHH
Confidence 3579999988876543
No 193
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.94 E-value=76 Score=23.87 Aligned_cols=39 Identities=26% Similarity=0.735 Sum_probs=28.7
Q ss_pred CCCCcccccccc-ccccc-cccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 265 DDECAICREPMA-KAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 265 ~~~C~IC~~~~~-~~~~l-~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
...|+.|-..+. +...+ .=+..||..| ..|-.|+.++..
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 55 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRELFYEDRHFHEGC------------FRCCRCQRSLAD 55 (82)
T ss_dssp SCBCTTTCCBCCSSCCBCCCSSCCCBTTT------------SBCTTTCCBCSS
T ss_pred CCcCccCCCccccCcEEEEeCCccccccC------------CeecCCCCccCC
Confidence 457999999887 23333 4588899988 579999888753
No 194
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=20.78 E-value=23 Score=21.90 Aligned_cols=13 Identities=23% Similarity=0.621 Sum_probs=9.7
Q ss_pred CCCCCccccCCcC
Q 010130 303 MYSCPTCRKPLFV 315 (517)
Q Consensus 303 ~~~CP~CR~~~~~ 315 (517)
...||+|+...+.
T Consensus 3 k~~CpvCk~q~Pd 15 (28)
T 2jvx_A 3 DFCCPKCQYQAPD 15 (28)
T ss_dssp CEECTTSSCEESS
T ss_pred cccCccccccCcC
Confidence 4689999986543
No 195
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=20.56 E-value=52 Score=24.46 Aligned_cols=39 Identities=23% Similarity=0.577 Sum_probs=29.3
Q ss_pred CCCCccccccccc-----cccccccCccchhhHHHHHHhCCCCCCCCCccccCCcC
Q 010130 265 DDECAICREPMAK-----AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 315 (517)
Q Consensus 265 ~~~C~IC~~~~~~-----~~~l~C~H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 315 (517)
...|+-|-+.+.. .....=+..||..| ..|-.|+.++..
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 58 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAYEGQSWHDYC------------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEETTEEEETTT------------CBCSSSCCBCTT
T ss_pred CccCcccCCcccCCCCCceeEEECcceeCccc------------CEehhcCCCCCC
Confidence 4579999998874 23335678899988 579999988753
Done!