BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010132
(517 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BH9|A Chain A, X-Ray Structure Of A Deletion Variant Of Human Glucose 6-
Phosphate Dehydrogenase Complexed With Structural And
Coenzyme Nadp
pdb|2BHL|A Chain A, X-Ray Structure Of Human Glucose-6-Phosphate Dehydrogenase
(Deletion Variant) Complexed With Glucose-6-Phosphate
pdb|2BHL|B Chain B, X-Ray Structure Of Human Glucose-6-Phosphate Dehydrogenase
(Deletion Variant) Complexed With Glucose-6-Phosphate
Length = 489
Score = 528 bits (1360), Expect = e-150, Method: Compositional matrix adjust.
Identities = 268/495 (54%), Positives = 343/495 (69%), Gaps = 29/495 (5%)
Query: 34 IIVLGASGDLAKKKTFPALFNLYRQGFLQSNEVHIFGYARTKISDDELRNRIRGYLINDK 93
I++GASGDLAKKK +P ++ L+R G L N I GYAR++++ ++R + + K
Sbjct: 8 FIIMGASGDLAKKKIYPTIWWLFRDGLLPEN-TFIVGYARSRLTVADIRKQSEPFF---K 63
Query: 94 SAPGQSEQVSEFLQLIKYVSGSYDTEEGFQLLDKEISAHESSKNSLEGSSRRLFYFALPP 153
+ P + ++ +F YV+G YD +Q L+ ++A L + RLFY ALPP
Sbjct: 64 ATPEEKLKLEDFFARNSYVAGQYDDAASYQRLNSHMNALH-----LGSQANRLFYLALPP 118
Query: 154 SVYPSVSRMIKKCCMNRSDLGGWTRIVVEKPFGKDLDSSEKLSAQIGELFEEPQIYRIDH 213
+VY +V++ I + CM++ GW RI+VEKPFG+DL SS++LS I LF E QIYRIDH
Sbjct: 119 TVYEAVTKNIHESCMSQI---GWNRIIVEKPFGRDLQSSDRLSNHISSLFREDQIYRIDH 175
Query: 214 YLGKELVQNLLVLRFANRMFLPLWNRDNIDNVQIVFREDFGTEGRGGYFDEYGIIRDIIQ 273
YLGKE+VQNL+VLRFANR+F P+WNRDNI V + F+E FGTEGRGGYFDE+GIIRD++Q
Sbjct: 176 YLGKEMVQNLMVLRFANRIFGPIWNRDNIACVILTFKEPFGTEGRGGYFDEFGIIRDVMQ 235
Query: 274 NHLLQVLCLVAMEKPVSLKPEHIRDEKVKVCSSISTPNQREEVVLGQY-----------D 322
NHLLQ+LCLVAMEKP S + +RDEKVKV IS Q VVLGQY
Sbjct: 236 NHLLQMLCLVAMEKPASTNSDDVRDEKVKVLKCISEV-QANNVVLGQYVGNPDGEGEATK 294
Query: 323 GYRDDPTVPDHSNTPTFATAVLRIHNERWEGVPFILKAGKALNSRKAEIRVQFKDVPGDI 382
GY DDPTVP S T TFA VL + NERW+GVPFIL+ GKALN RKAE+R+QF DV GDI
Sbjct: 295 GYLDDPTVPRGSTTATFAAVVLYVENERWDGVPFILRCGKALNERKAEVRLQFHDVAGDI 354
Query: 383 F--KCKKQGRNEFVIRLQPSEAMYMKLTVKQPGLEMSTAQSELDLSYRQRYQGVTIPEAY 440
F +CK RNE VIR+QP+EA+Y K+ K+PG+ + +SELDL+Y RY+ V +P+AY
Sbjct: 355 FHQQCK---RNELVIRVQPNEAVYTKMMTKKPGMFFNPEESELDLTYGNRYKNVKLPDAY 411
Query: 441 ERLILDTIRGDQQHFVRRDELKAAWEIFTPLLHRIDDGEMKPLPYNPGSRGPAEADELLS 500
ERLILD G Q HFVR DEL+ AW IFTPLLH+I+ + KP+PY GSRGP EADEL+
Sbjct: 412 ERLILDVFCGSQMHFVRSDELREAWRIFTPLLHQIELEKPKPIPYIYGSRGPTEADELMK 471
Query: 501 KVGYVQTHGYIWIPP 515
+VG+ Y W+ P
Sbjct: 472 RVGFQYEGTYKWVNP 486
>pdb|1QKI|A Chain A, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|B Chain B, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|C Chain C, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|D Chain D, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|E Chain E, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|F Chain F, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|G Chain G, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|H Chain H, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
Length = 514
Score = 528 bits (1359), Expect = e-150, Method: Compositional matrix adjust.
Identities = 273/515 (53%), Positives = 350/515 (67%), Gaps = 31/515 (6%)
Query: 14 LRNDSFSRDNDNVPETGCLSIIVLGASGDLAKKKTFPALFNLYRQGFLQSNEVHIFGYAR 73
LR + F D + +T I++GASGDLAKKK +P ++ L+R G L N I GYAR
Sbjct: 15 LREELFQGDAFHQSDTHIF--IIMGASGDLAKKKIYPTIWWLFRDGLLPEN-TFIVGYAR 71
Query: 74 TKISDDELRNRIRGYLINDKSAPGQSEQVSEFLQLIKYVSGSYDTEEGFQLLDKEISAHE 133
++++ ++R + + K+ P + ++ +F YV+G YD +Q L+ ++A
Sbjct: 72 SRLTVADIRKQSEPFF---KATPEEKLKLEDFFARNSYVAGQYDDAASYQRLNSHMNALH 128
Query: 134 SSKNSLEGSSRRLFYFALPPSVYPSVSRMIKKCCMNRSDLGGWTRIVVEKPFGKDLDSSE 193
L + RLFY ALPP+VY +V++ I + CM++ GW RI+VEKPFG+DL SS+
Sbjct: 129 -----LGSQANRLFYLALPPTVYEAVTKNIHESCMSQI---GWNRIIVEKPFGRDLQSSD 180
Query: 194 KLSAQIGELFEEPQIYRIDHYLGKELVQNLLVLRFANRMFLPLWNRDNIDNVQIVFREDF 253
+LS I LF E QIYRIDHYLGKE+VQNL+VLRFANR+F P+WNRDNI V + F+E F
Sbjct: 181 RLSNHISSLFREDQIYRIDHYLGKEMVQNLMVLRFANRIFGPIWNRDNIACVILTFKEPF 240
Query: 254 GTEGRGGYFDEYGIIRDIIQNHLLQVLCLVAMEKPVSLKPEHIRDEKVKVCSSISTPNQR 313
GTEGRGGYFDE+GIIRD++QNHLLQ+LCLVAMEKP S + +RDEKVKV IS Q
Sbjct: 241 GTEGRGGYFDEFGIIRDVMQNHLLQMLCLVAMEKPASTNSDDVRDEKVKVLKCISEV-QA 299
Query: 314 EEVVLGQY-----------DGYRDDPTVPDHSNTPTFATAVLRIHNERWEGVPFILKAGK 362
VVLGQY GY DDPTVP S T TFA VL + NERW+GVPFIL+ GK
Sbjct: 300 NNVVLGQYVGNPDGEGEATKGYLDDPTVPRGSTTATFAAVVLYVENERWDGVPFILRCGK 359
Query: 363 ALNSRKAEIRVQFKDVPGDIF--KCKKQGRNEFVIRLQPSEAMYMKLTVKQPGLEMSTAQ 420
ALN RKAE+R+QF DV GDIF +CK RNE VIR+QP+EA+Y K+ K+PG+ + +
Sbjct: 360 ALNERKAEVRLQFHDVAGDIFHQQCK---RNELVIRVQPNEAVYTKMMTKKPGMFFNPEE 416
Query: 421 SELDLSYRQRYQGVTIPEAYERLILDTIRGDQQHFVRRDELKAAWEIFTPLLHRIDDGEM 480
SELDL+Y RY+ V +P+AYERLILD G Q HFVR DEL AW IFTPLLH+I+ +
Sbjct: 417 SELDLTYGNRYKNVKLPDAYERLILDVFCGSQMHFVRSDELLEAWRIFTPLLHQIELEKP 476
Query: 481 KPLPYNPGSRGPAEADELLSKVGYVQTHGYIWIPP 515
KP+PY GSRGP EADEL+ +VG+ Y W+ P
Sbjct: 477 KPIPYIYGSRGPTEADELMKRVGFQYEGTYKWVNP 511
>pdb|4E9I|A Chain A, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4E9I|B Chain B, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4E9I|C Chain C, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4E9I|D Chain D, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4EM5|A Chain A, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
pdb|4EM5|B Chain B, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
pdb|4EM5|C Chain C, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
pdb|4EM5|D Chain D, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
Length = 541
Score = 486 bits (1251), Expect = e-137, Method: Compositional matrix adjust.
Identities = 267/524 (50%), Positives = 343/524 (65%), Gaps = 26/524 (4%)
Query: 1 MGSGQWIMEKRSSLRNDSFSRDNDNV-PE--TGCLSIIVLGASGDLAKKKTFPALFNLYR 57
M S + + + LR + R D V PE + L+I+VLGASGDLAKKKTFPALF LY
Sbjct: 21 MASMENAKKVAAELRGEVCERIPDAVSPELRSRALTIVVLGASGDLAKKKTFPALFQLYC 80
Query: 58 QGFLQSNEVHIFGYARTKISDDEL--RNRIRGYL--INDKSAPGQSEQVSEFLQLIKYVS 113
G L +V+I GYAR+ + D E ++ + G+ ++++ V FL+ I Y++
Sbjct: 81 NGML-PRDVNILGYARSTMEDVEKWKKDTLAGFFTRLDERGC-----HVGNFLRRISYMT 134
Query: 114 GSYDTEEGFQLLDKEISAHESSKNSLEGSSRRLFYFALPPSVYPSVSRMIKKCCMNRSDL 173
GSYD +E F L++ I E + E RLFY ALPPSV+ V R + K M + +L
Sbjct: 135 GSYDRDEDFARLNERILRMEEAFQGPEKGGNRLFYLALPPSVFVGVCRGLSKGAMQKPEL 194
Query: 174 GGWTRIVVEKPFGKDLDSSEKLSAQIGELFEEPQIYRIDHYLGKELVQNLLVLRFANRMF 233
G W R++VEKPFG+D ++SE+LS Q+ LF E Q++RIDHYLGKE+VQN++V RFANR+F
Sbjct: 195 G-WVRLIVEKPFGRDTETSEQLSNQLKPLFNERQVFRIDHYLGKEMVQNIIVTRFANRVF 253
Query: 234 LPLWNRDNIDNVQIVFREDFGTEGRGGYFDEYGIIRDIIQNHLLQVLCLVAMEKPVSLKP 293
LWN ++I VQI F+E GT GRGGYFD GIIRD+IQNHL Q+L L+ MEKP SL
Sbjct: 254 SALWNSNSIACVQITFKEKIGTAGRGGYFDSIGIIRDVIQNHLTQILSLLTMEKPRSLSA 313
Query: 294 EHIRDEKVKVCSSISTPNQREEVVLGQYD--------GYRDDPTVPDHSNTPTFATAVLR 345
E IRDEKV+V + P E VLGQY GY DDP+VP S+ PTFA L
Sbjct: 314 EDIRDEKVQVLRQV-VPANPAECVLGQYTASADGSTPGYLDDPSVPKGSHCPTFAVLRLH 372
Query: 346 IHNERWEGVPFILKAGKALNSRKAEIRVQFKDVPGDIFKCKKQGRNEFVIRLQPSEAMYM 405
++N+RW GVPFI++AGKAL R +IR+QFKD + + RNE VIR QPSEAMY+
Sbjct: 373 VNNDRWHGVPFIIRAGKALEERLLDIRIQFKDEIRPFGESTQ--RNELVIRAQPSEAMYL 430
Query: 406 KLTVKQPGLEMSTAQSELDLSYRQRYQGVTIPEAYERLILDTIRGDQQHFVRRDELKAAW 465
KLT K PGL T Q+ELDL+Y +RY VT+P+AYE LI + + G+ +FVR DEL AAW
Sbjct: 431 KLTAKTPGLLNDTHQTELDLTYERRYD-VTLPDAYESLIHEALLGNSTNFVRVDELDAAW 489
Query: 466 EIFTPLLHRIDDGEMKPLPYNPGSRGPAEADELLSKVGYVQTHG 509
I+TPLLH ID GE+K LPY GS GP EA E + GY T+G
Sbjct: 490 RIYTPLLHAIDRGEVKVLPYAAGSCGPEEAQEFIRISGYKTTNG 533
>pdb|1DPG|A Chain A, Glucose 6-Phosphate Dehydrogenase From Leuconostoc
Mesenteroides
pdb|1DPG|B Chain B, Glucose 6-Phosphate Dehydrogenase From Leuconostoc
Mesenteroides
Length = 485
Score = 254 bits (648), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 154/484 (31%), Positives = 249/484 (51%), Gaps = 27/484 (5%)
Query: 34 IIVLGASGDLAKKKTFPALFNLYRQGFLQSNEVHIFGYARTKISDDELRNRIRGYLINDK 93
+ G +GDLAK+K +P++FNLY++G+LQ + I G AR ++DDE + +R + K
Sbjct: 8 VTFFGGTGDLAKRKLYPSVFNLYKKGYLQKH-FAIVGTARQALNDDEFKQLVRDCI---K 63
Query: 94 SAPGQSEQVSEFLQLIKYVSGSYDTEEGFQLLDKEISAHESSKNSLEGSSRRLFYFALPP 153
Q F++ Y + + +L + I E + + + R+FY ++ P
Sbjct: 64 DFTDDQAQAEAFIEHFSYRAHDVTDAASYAVLKEAI---EEAADKFDIDGNRIFYMSVAP 120
Query: 154 SVYPSVSRMIKKCCMNRSDLGGWTRIVVEKPFGKDLDSSEKLSAQIGELFEEPQIYRIDH 213
+ ++++ +K + G+ R+++EKPFG D++ +L + F++ Q++RIDH
Sbjct: 121 RFFGTIAKYLKSEGLLAD--TGYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFRIDH 178
Query: 214 YLGKELVQNLLVLRFANRMFLPLWNRDNIDNVQIVFREDFGTEGRGGYFDEYGIIRDIIQ 273
YLGKE+VQN+ LRF N +F WN+D I NVQ+ E G E R GY+D G + D+IQ
Sbjct: 179 YLGKEMVQNIAALRFGNPIFDAAWNKDYIKNVQVTLSEVLGVEERAGYYDTAGALLDMIQ 238
Query: 274 NHLLQVLCLVAMEKPVSLKPEHIRDEKVKVCSSISTPNQRE---EVVLGQYDG------- 323
NH +Q++ +AMEKP S + IR K +++ ++ E V QY
Sbjct: 239 NHTMQIVGWLAMEKPESFTDKDIRAAKNAAFNALKIYDEAEVNKYFVRAQYGAGDSADFK 298
Query: 324 -YRDDPTVPDHSNTPTFATAVLRIHNERWEGVPFILKAGKALNSRKAEIRVQFKDVPGDI 382
Y ++ VP S TF L+ RWEGVPF +++GK L +++ + + FK G
Sbjct: 299 PYLEELDVPADSKNNTFIAGELQFDLPRWEGVPFYVRSGKRLAAKQTRVDIVFK--AGTF 356
Query: 383 FKCKKQGRNEFV--IRLQPSEAMYMKLTVKQPGLEMSTAQSELDLSYRQRYQGVTIPEAY 440
+Q E V I + P A+ +KL K +T +L + + T PE Y
Sbjct: 357 NFGSEQEAQEAVLSIIIDPKGAIELKLNAKSVEDAFNTRTIDLGWTVSDEDKKNT-PEPY 415
Query: 441 ERLILDTIRGDQQHFVRRDELKAAWEIFTPLLHRIDDGEMKPL-PYNPGSRGPAEADELL 499
ER+I DT+ GD +F + + AW+ F + + + PL Y GS GP +D+LL
Sbjct: 416 ERMIHDTMNGDGSNFADWNGVSIAWK-FVDAISAVYTADKAPLETYKSGSMGPEASDKLL 474
Query: 500 SKVG 503
+ G
Sbjct: 475 AANG 478
>pdb|1E77|A Chain A, Complex Of Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides With
Substrate
pdb|1H9A|A Chain A, Complex Of Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From L. Mesenteroides With Coenzyme Nadp
pdb|1H9B|A Chain A, Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
Length = 485
Score = 253 bits (647), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 150/482 (31%), Positives = 247/482 (51%), Gaps = 23/482 (4%)
Query: 34 IIVLGASGDLAKKKTFPALFNLYRQGFLQSNEVHIFGYARTKISDDELRNRIRGYLINDK 93
+ G +GDLAK+K +P++FNLY++G+LQ + I G AR ++DDE + +R + K
Sbjct: 8 VTFFGGTGDLAKRKLYPSVFNLYKKGYLQKH-FAIVGTARQALNDDEFKQLVRDSI---K 63
Query: 94 SAPGQSEQVSEFLQLIKYVSGSYDTEEGFQLLDKEISAHESSKNSLEGSSRRLFYFALPP 153
Q F++ Y + + +L + I E + + + R+FY ++ P
Sbjct: 64 DFTDDQAQAEAFIEHFSYRAHDVTDAASYAVLKEAI---EEAADKFDIDGNRIFYMSVAP 120
Query: 154 SVYPSVSRMIKKCCMNRSDLGGWTRIVVEKPFGKDLDSSEKLSAQIGELFEEPQIYRIDH 213
+ ++++ +K + G+ R+++EKPFG D++ +L + F++ Q++RIDH
Sbjct: 121 RFFGTIAKYLKSEGLLAD--TGYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFRIDH 178
Query: 214 YLGKELVQNLLVLRFANRMFLPLWNRDNIDNVQIVFREDFGTEGRGGYFDEYGIIRDIIQ 273
YLGKE+VQN+ LRF N +F WN+D I NVQ+ E G E R GY+D G + D+IQ
Sbjct: 179 YLGKEMVQNIAALRFGNPIFDAAWNKDYIKNVQVTLSEVLGVEERAGYYDTAGALLDMIQ 238
Query: 274 NHLLQVLCLVAMEKPVSLKPEHIRDEKVKVCSSISTPNQRE---EVVLGQYDG------- 323
NH +Q++ +AMEKP S + IR K +++ ++ E V QY
Sbjct: 239 NHTMQIVGWLAMEKPESFTDKDIRAAKNAAFNALKIYDEAEVNKYFVRAQYGAGDSADFK 298
Query: 324 -YRDDPTVPDHSNTPTFATAVLRIHNERWEGVPFILKAGKALNSRKAEIRVQFKDVPGDI 382
Y ++ VP S TF L+ RWEGVPF +++GK L +++ + + FK +
Sbjct: 299 PYLEELDVPADSKNNTFIAGELQFDLPRWEGVPFYVRSGKRLAAKQTRVDIVFKAGTFNF 358
Query: 383 FKCKKQGRNEFVIRLQPSEAMYMKLTVKQPGLEMSTAQSELDLSYRQRYQGVTIPEAYER 442
++ I + P A+ +KL K +T +L + + T PE YER
Sbjct: 359 GSEQEACEAVLSIIIDPKGAIELKLNAKSVEDAFNTRTIDLGWTVSDEDKKNT-PEPYER 417
Query: 443 LILDTIRGDQQHFVRRDELKAAWEIFTPLLHRIDDGEMKPL-PYNPGSRGPAEADELLSK 501
+I DT+ GD +F + + AW+ F + + + PL Y GS GP +D+LL+
Sbjct: 418 MIHDTMNGDGSNFADWNGVSIAWK-FVDAISAVYTADKAPLETYKSGSMGPEASDKLLAA 476
Query: 502 VG 503
G
Sbjct: 477 NG 478
>pdb|1H93|A Chain A, Active Mutant (S215->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
pdb|1H94|A Chain A, Complex Of Active Mutant (S215->c) Of Glucose 6-Phosphate
Dehydrogenase From L.Mesenteroides With Coenzyme Nad
Length = 485
Score = 253 bits (646), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 154/484 (31%), Positives = 249/484 (51%), Gaps = 27/484 (5%)
Query: 34 IIVLGASGDLAKKKTFPALFNLYRQGFLQSNEVHIFGYARTKISDDELRNRIRGYLINDK 93
+ G +GDLAK+K +P++FNLY++G+LQ + I G AR ++DDE + +R + K
Sbjct: 8 VTFFGGTGDLAKRKLYPSVFNLYKKGYLQKH-FAIVGTARQALNDDEFKQLVRDSI---K 63
Query: 94 SAPGQSEQVSEFLQLIKYVSGSYDTEEGFQLLDKEISAHESSKNSLEGSSRRLFYFALPP 153
Q F++ Y + + +L + I E + + + R+FY ++ P
Sbjct: 64 DFTDDQAQAEAFIEHFSYRAHDVTDAASYAVLKEAI---EEAADKFDIDGNRIFYMSVAP 120
Query: 154 SVYPSVSRMIKKCCMNRSDLGGWTRIVVEKPFGKDLDSSEKLSAQIGELFEEPQIYRIDH 213
+ ++++ +K + G+ R+++EKPFG D++ +L + F++ Q++RIDH
Sbjct: 121 RFFGTIAKYLKSEGLLAD--TGYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFRIDH 178
Query: 214 YLGKELVQNLLVLRFANRMFLPLWNRDNIDNVQIVFREDFGTEGRGGYFDEYGIIRDIIQ 273
YLGKE+VQN+ LRF N +F WN+D I NVQ+ E G E R GY+D G + D+IQ
Sbjct: 179 YLGKEMVQNIAALRFGNPIFDAAWNKDYIKNVQVTLCEVLGVEERAGYYDTAGALLDMIQ 238
Query: 274 NHLLQVLCLVAMEKPVSLKPEHIRDEKVKVCSSISTPNQRE---EVVLGQYDG------- 323
NH +Q++ +AMEKP S + IR K +++ ++ E V QY
Sbjct: 239 NHTMQIVGWLAMEKPESFTDKDIRAAKNAAFNALKIYDEAEVNKYFVRAQYGAGDSADFK 298
Query: 324 -YRDDPTVPDHSNTPTFATAVLRIHNERWEGVPFILKAGKALNSRKAEIRVQFKDVPGDI 382
Y ++ VP S TF L+ RWEGVPF +++GK L +++ + + FK G
Sbjct: 299 PYLEELDVPADSKNNTFIAGELQFDLPRWEGVPFYVRSGKRLAAKQTRVDIVFK--AGTF 356
Query: 383 FKCKKQGRNEFV--IRLQPSEAMYMKLTVKQPGLEMSTAQSELDLSYRQRYQGVTIPEAY 440
+Q E V I + P A+ +KL K +T +L + + T PE Y
Sbjct: 357 NFGSEQEAQEAVLSIIIDPKGAIELKLNAKSVEDAFNTRTIDLGWTVSDEDKKNT-PEPY 415
Query: 441 ERLILDTIRGDQQHFVRRDELKAAWEIFTPLLHRIDDGEMKPL-PYNPGSRGPAEADELL 499
ER+I DT+ GD +F + + AW+ F + + + PL Y GS GP +D+LL
Sbjct: 416 ERMIHDTMNGDGSNFADWNGVSIAWK-FVDAISAVYTADKAPLETYKSGSMGPEASDKLL 474
Query: 500 SKVG 503
+ G
Sbjct: 475 AANG 478
>pdb|1E7M|A Chain A, Active Site Mutant (D177->n) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
pdb|1E7Y|A Chain A, Active Site Mutant (D177->n) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides Complexed
With Substrate And Nadph
Length = 485
Score = 253 bits (645), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 153/484 (31%), Positives = 249/484 (51%), Gaps = 27/484 (5%)
Query: 34 IIVLGASGDLAKKKTFPALFNLYRQGFLQSNEVHIFGYARTKISDDELRNRIRGYLINDK 93
+ G +GDLAK+K +P++FNLY++G+LQ + I G AR ++DDE + +R + K
Sbjct: 8 VTFFGGTGDLAKRKLYPSVFNLYKKGYLQKH-FAIVGTARQALNDDEFKQLVRDSI---K 63
Query: 94 SAPGQSEQVSEFLQLIKYVSGSYDTEEGFQLLDKEISAHESSKNSLEGSSRRLFYFALPP 153
Q F++ Y + + +L + I E + + + R+FY ++ P
Sbjct: 64 DFTDDQAQAEAFIEHFSYRAHDVTDAASYAVLKEAI---EEAADKFDIDGNRIFYMSVAP 120
Query: 154 SVYPSVSRMIKKCCMNRSDLGGWTRIVVEKPFGKDLDSSEKLSAQIGELFEEPQIYRIDH 213
+ ++++ +K + G+ R+++EKPFG D++ +L + F++ Q++RI+H
Sbjct: 121 RFFGTIAKYLKSEGLLAD--TGYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFRINH 178
Query: 214 YLGKELVQNLLVLRFANRMFLPLWNRDNIDNVQIVFREDFGTEGRGGYFDEYGIIRDIIQ 273
YLGKE+VQN+ LRF N +F WN+D I NVQ+ E G E R GY+D G + D+IQ
Sbjct: 179 YLGKEMVQNIAALRFGNPIFDAAWNKDYIKNVQVTLSEVLGVEERAGYYDTAGALLDMIQ 238
Query: 274 NHLLQVLCLVAMEKPVSLKPEHIRDEKVKVCSSISTPNQRE---EVVLGQYDG------- 323
NH +Q++ +AMEKP S + IR K +++ ++ E V QY
Sbjct: 239 NHTMQIVGWLAMEKPESFTDKDIRAAKNAAFNALKIYDEAEVNKYFVRAQYGAGDSADFK 298
Query: 324 -YRDDPTVPDHSNTPTFATAVLRIHNERWEGVPFILKAGKALNSRKAEIRVQFKDVPGDI 382
Y ++ VP S TF L+ RWEGVPF +++GK L +++ + + FK G
Sbjct: 299 PYLEELDVPADSKNNTFIAGELQFDLPRWEGVPFYVRSGKRLAAKQTRVDIVFK--AGTF 356
Query: 383 FKCKKQGRNEFV--IRLQPSEAMYMKLTVKQPGLEMSTAQSELDLSYRQRYQGVTIPEAY 440
+Q E V I + P A+ +KL K +T +L + + T PE Y
Sbjct: 357 NFGSEQEAQEAVLSIIIDPKGAIELKLNAKSVEDAFNTRTIDLGWTVSDEDKKNT-PEPY 415
Query: 441 ERLILDTIRGDQQHFVRRDELKAAWEIFTPLLHRIDDGEMKPL-PYNPGSRGPAEADELL 499
ER+I DT+ GD +F + + AW+ F + + + PL Y GS GP +D+LL
Sbjct: 416 ERMIHDTMNGDGSNFADWNGVSIAWK-FVDAISAVYTADKAPLETYKSGSMGPEASDKLL 474
Query: 500 SKVG 503
+ G
Sbjct: 475 AANG 478
>pdb|2DPG|A Chain A, Complex Of Inactive Mutant (H240->n) Of Glucose
6-Phosphate Dehydrogenase From Leuconostoc Mesenteroides
With Nadp+
Length = 485
Score = 251 bits (642), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 153/484 (31%), Positives = 249/484 (51%), Gaps = 27/484 (5%)
Query: 34 IIVLGASGDLAKKKTFPALFNLYRQGFLQSNEVHIFGYARTKISDDELRNRIRGYLINDK 93
+ G +GDLAK+K +P++FNLY++G+LQ + I G AR ++DDE + +R + K
Sbjct: 8 VTFFGGTGDLAKRKLYPSVFNLYKKGYLQKH-FAIVGTARQALNDDEFKQLVRDSI---K 63
Query: 94 SAPGQSEQVSEFLQLIKYVSGSYDTEEGFQLLDKEISAHESSKNSLEGSSRRLFYFALPP 153
Q F++ Y + + +L + I E + + + R+FY ++ P
Sbjct: 64 DFTDDQAQAEAFIEHFSYRAHDVTDAASYAVLKEAI---EEAADKFDIDGNRIFYMSVAP 120
Query: 154 SVYPSVSRMIKKCCMNRSDLGGWTRIVVEKPFGKDLDSSEKLSAQIGELFEEPQIYRIDH 213
+ ++++ +K + G+ R+++EKPFG D++ +L + F++ Q++RIDH
Sbjct: 121 RFFGTIAKYLKSEGLLAD--TGYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFRIDH 178
Query: 214 YLGKELVQNLLVLRFANRMFLPLWNRDNIDNVQIVFREDFGTEGRGGYFDEYGIIRDIIQ 273
YLGKE+VQN+ LRF N +F WN+D I NVQ+ E G E R GY+D G + D+IQ
Sbjct: 179 YLGKEMVQNIAALRFGNPIFDAAWNKDYIKNVQVTLSEVLGVEERAGYYDTAGALLDMIQ 238
Query: 274 NHLLQVLCLVAMEKPVSLKPEHIRDEKVKVCSSISTPNQRE---EVVLGQYDG------- 323
N+ +Q++ +AMEKP S + IR K +++ ++ E V QY
Sbjct: 239 NNTMQIVGWLAMEKPESFTDKDIRAAKNAAFNALKIYDEAEVNKYFVRAQYGAGDSADFK 298
Query: 324 -YRDDPTVPDHSNTPTFATAVLRIHNERWEGVPFILKAGKALNSRKAEIRVQFKDVPGDI 382
Y ++ VP S TF L+ RWEGVPF +++GK L +++ + + FK G
Sbjct: 299 PYLEELDVPADSKNNTFIAGELQFDLPRWEGVPFYVRSGKRLAAKQTRVDIVFK--AGTF 356
Query: 383 FKCKKQGRNEFV--IRLQPSEAMYMKLTVKQPGLEMSTAQSELDLSYRQRYQGVTIPEAY 440
+Q E V I + P A+ +KL K +T +L + + T PE Y
Sbjct: 357 NFGSEQEAQEAVLSIIIDPKGAIELKLNAKSVEDAFNTRTIDLGWTVSDEDKKNT-PEPY 415
Query: 441 ERLILDTIRGDQQHFVRRDELKAAWEIFTPLLHRIDDGEMKPL-PYNPGSRGPAEADELL 499
ER+I DT+ GD +F + + AW+ F + + + PL Y GS GP +D+LL
Sbjct: 416 ERMIHDTMNGDGSNFADWNGVSIAWK-FVDAISAVYTADKAPLETYKSGSMGPEASDKLL 474
Query: 500 SKVG 503
+ G
Sbjct: 475 AANG 478
>pdb|1SOT|A Chain A, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|B Chain B, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|C Chain C, Crystal Structure Of The Degs Stress Sensor
Length = 320
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 39 ASGDLAKKKTFPALFNLYRQGFLQS--NEVHIFGYARTKISDDELRNRIRGYLINDKSAP 96
AS +LA ++ PA+ N+Y +G + N++ I I D RGY+I +K
Sbjct: 4 ASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIXDQ------RGYIITNKHVI 57
Query: 97 GQSEQVSEFLQ 107
++Q+ LQ
Sbjct: 58 NDADQIIVALQ 68
>pdb|1SOZ|A Chain A, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|B Chain B, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|C Chain C, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1VCW|A Chain A, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|B Chain B, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|C Chain C, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|2R3Y|A Chain A, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|B Chain B, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|C Chain C, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
Length = 314
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 39 ASGDLAKKKTFPALFNLYRQGFLQS--NEVHIFGYARTKISDDELRNRIRGYLINDKSAP 96
AS +LA ++ PA+ N+Y +G + N++ I I D RGY+I +K
Sbjct: 4 ASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQ------RGYIITNKHVI 57
Query: 97 GQSEQVSEFLQ 107
++Q+ LQ
Sbjct: 58 NDADQIIVALQ 68
>pdb|1TE0|A Chain A, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
pdb|1TE0|B Chain B, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
Length = 318
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 39 ASGDLAKKKTFPALFNLYRQGFLQS--NEVHIFGYARTKISDDELRNRIRGYLINDKSAP 96
AS +LA ++ PA+ N+Y +G + N++ I I D RGY+I +K
Sbjct: 9 ASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQ------RGYIITNKHVI 62
Query: 97 GQSEQVSEFLQ 107
++Q+ LQ
Sbjct: 63 NDADQIIVALQ 73
>pdb|2QF0|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|B Chain B, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|C Chain C, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|D Chain D, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|E Chain E, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|F Chain F, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|G Chain G, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|H Chain H, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|I Chain I, Structure Of The Delta Pdz Truncation Of The Degs Protease
Length = 243
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 39 ASGDLAKKKTFPALFNLYRQGFLQS--NEVHIFGYARTKISDDELRNRIRGYLINDKSAP 96
AS +LA ++ PA+ N+Y +G + N++ I I D RGY+I +K
Sbjct: 32 ASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIXDQ------RGYIITNKHVI 85
Query: 97 GQSEQVSEFLQ 107
++Q+ LQ
Sbjct: 86 NDADQIIVALQ 96
>pdb|3GCN|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Omp Peptide (Yqf)
pdb|3GCO|A Chain A, Crystal Structure Of Degs H198p/d320a Mutant Modified By
Dfp In Complex With Dnrdgnvyqf Omp Peptide
pdb|3GDS|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Dnrdgnvyyf Peptide
pdb|3GDU|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDV|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
Length = 340
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 39 ASGDLAKKKTFPALFNLYRQGFLQS--NEVHIFGYARTKISDDELRNRIRGYLINDKSAP 96
AS +LA ++ PA+ N+Y +G + N++ I I D RGY+I +K
Sbjct: 30 ASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQ------RGYIITNKHVI 83
Query: 97 GQSEQVSEFLQ 107
++Q+ LQ
Sbjct: 84 NDADQIIVALQ 94
>pdb|2RCE|A Chain A, Dfp Modified Degs Delta Pdz
pdb|2RCE|B Chain B, Dfp Modified Degs Delta Pdz
pdb|2RCE|C Chain C, Dfp Modified Degs Delta Pdz
pdb|2RCE|D Chain D, Dfp Modified Degs Delta Pdz
pdb|2RCE|E Chain E, Dfp Modified Degs Delta Pdz
pdb|2RCE|F Chain F, Dfp Modified Degs Delta Pdz
pdb|2RCE|G Chain G, Dfp Modified Degs Delta Pdz
pdb|2RCE|H Chain H, Dfp Modified Degs Delta Pdz
pdb|2RCE|I Chain I, Dfp Modified Degs Delta Pdz
Length = 243
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 39 ASGDLAKKKTFPALFNLYRQGFLQS--NEVHIFGYARTKISDDELRNRIRGYLINDKSAP 96
AS +LA ++ PA+ N+Y +G + N++ I I D RGY+I +K
Sbjct: 32 ASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQ------RGYIITNKHVI 85
Query: 97 GQSEQVSEFLQ 107
++Q+ LQ
Sbjct: 86 NDADQIIVALQ 96
>pdb|3LGI|A Chain A, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
pdb|3LGI|B Chain B, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
pdb|3LGI|C Chain C, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
Length = 237
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 39 ASGDLAKKKTFPALFNLYRQGFLQS--NEVHIFGYARTKISDDELRNRIRGYLINDKSAP 96
AS +LA ++ PA+ N+Y +G + N++ I I D RGY+I +K
Sbjct: 20 ASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQ------RGYIITNKHVI 73
Query: 97 GQSEQVSEFLQ 107
++Q+ LQ
Sbjct: 74 NDADQIIVALQ 84
>pdb|2QF3|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF3|B Chain B, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF3|C Chain C, Structure Of The Delta Pdz Truncation Of The Degs Protease
Length = 243
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 39 ASGDLAKKKTFPALFNLYRQGFLQS--NEVHIFGYARTKISDDELRNRIRGYLINDKSAP 96
AS +LA ++ PA+ N+Y +G + N++ I I D RGY+I +K
Sbjct: 32 ASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQ------RGYIITNKHVI 85
Query: 97 GQSEQVSEFLQ 107
++Q+ LQ
Sbjct: 86 NDADQIIVALQ 96
>pdb|2R3U|A Chain A, Crystal Structure Of The Pdz Deletion Mutant Of Degs
pdb|2R3U|B Chain B, Crystal Structure Of The Pdz Deletion Mutant Of Degs
pdb|2R3U|C Chain C, Crystal Structure Of The Pdz Deletion Mutant Of Degs
Length = 211
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 39 ASGDLAKKKTFPALFNLYRQGFLQS--NEVHIFGYARTKISDDELRNRIRGYLINDKSAP 96
AS +LA ++ PA+ N+Y +G + N++ I I D RGY+I +K
Sbjct: 4 ASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQ------RGYIITNKHVI 57
Query: 97 GQSEQVSEFLQ 107
++Q+ LQ
Sbjct: 58 NDADQIIVALQ 68
>pdb|3B8J|A Chain A, Q191a Mutant Of Degs-Deltapdz
Length = 243
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 39 ASGDLAKKKTFPALFNLYRQGFLQS--NEVHIFGYARTKISDDELRNRIRGYLINDKSAP 96
AS +LA ++ PA+ N+Y +G + N++ I I D RGY+I +K
Sbjct: 32 ASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQ------RGYIITNKHVI 85
Query: 97 GQSEQVSEFLQ 107
++Q+ LQ
Sbjct: 86 NDADQIIVALQ 96
>pdb|2QGR|A Chain A, Structure Of The R178a Mutant Of Delta Pdz Degs Protease
Length = 243
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 39 ASGDLAKKKTFPALFNLYRQGFLQS--NEVHIFGYARTKISDDELRNRIRGYLINDKSAP 96
AS +LA ++ PA+ N+Y +G + N++ I I D RGY+I +K
Sbjct: 32 ASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQ------RGYIITNKHVI 85
Query: 97 GQSEQVSEFLQ 107
++Q+ LQ
Sbjct: 86 NDADQIIVALQ 96
>pdb|3LH1|A Chain A, Q191a Mutant Of The Degs-Deltapdz
Length = 241
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 39 ASGDLAKKKTFPALFNLYRQGFLQS--NEVHIFGYARTKISDDELRNRIRGYLINDKSAP 96
AS +LA ++ PA+ N+Y +G + N++ I I D RGY+I +K
Sbjct: 30 ASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQ------RGYIITNKHVI 83
Query: 97 GQSEQVSEFLQ 107
++Q+ LQ
Sbjct: 84 NDADQIIVALQ 94
>pdb|3LGW|A Chain A, H198pT167V DOUBLE MUTANT OF DEGS-Deltapdz Protease
Length = 241
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 39 ASGDLAKKKTFPALFNLYRQGFLQS--NEVHIFGYARTKISDDELRNRIRGYLINDKSAP 96
AS +LA ++ PA+ N+Y +G + N++ I I D RGY+I +K
Sbjct: 30 ASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQ------RGYIITNKHVI 83
Query: 97 GQSEQVSEFLQ 107
++Q+ LQ
Sbjct: 84 NDADQIIVALQ 94
>pdb|3LGU|A Chain A, Y162a Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 39 ASGDLAKKKTFPALFNLYRQGFLQS--NEVHIFGYARTKISDDELRNRIRGYLINDKSAP 96
AS +LA ++ PA+ N+Y +G + N++ I I D RGY+I +K
Sbjct: 30 ASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQ------RGYIITNKHVI 83
Query: 97 GQSEQVSEFLQ 107
++Q+ LQ
Sbjct: 84 NDADQIIVALQ 94
>pdb|3LH3|A Chain A, Dfp Modified Degs Delta Pdz
pdb|3LH3|B Chain B, Dfp Modified Degs Delta Pdz
pdb|3LH3|C Chain C, Dfp Modified Degs Delta Pdz
pdb|3LH3|D Chain D, Dfp Modified Degs Delta Pdz
pdb|3LH3|E Chain E, Dfp Modified Degs Delta Pdz
pdb|3LH3|F Chain F, Dfp Modified Degs Delta Pdz
pdb|3LH3|G Chain G, Dfp Modified Degs Delta Pdz
pdb|3LH3|H Chain H, Dfp Modified Degs Delta Pdz
pdb|3LH3|I Chain I, Dfp Modified Degs Delta Pdz
Length = 241
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 39 ASGDLAKKKTFPALFNLYRQGFLQS--NEVHIFGYARTKISDDELRNRIRGYLINDKSAP 96
AS +LA ++ PA+ N+Y +G + N++ I I D RGY+I +K
Sbjct: 30 ASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQ------RGYIITNKHVI 83
Query: 97 GQSEQVSEFLQ 107
++Q+ LQ
Sbjct: 84 NDADQIIVALQ 94
>pdb|3LGV|A Chain A, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|B Chain B, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|C Chain C, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|D Chain D, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|E Chain E, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|F Chain F, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|G Chain G, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|H Chain H, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|I Chain I, H198p Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 39 ASGDLAKKKTFPALFNLYRQGFLQS--NEVHIFGYARTKISDDELRNRIRGYLINDKSAP 96
AS +LA ++ PA+ N+Y +G + N++ I I D RGY+I +K
Sbjct: 30 ASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQ------RGYIITNKHVI 83
Query: 97 GQSEQVSEFLQ 107
++Q+ LQ
Sbjct: 84 NDADQIIVALQ 94
>pdb|3LGY|A Chain A, R178a Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 39 ASGDLAKKKTFPALFNLYRQGFLQS--NEVHIFGYARTKISDDELRNRIRGYLINDKSAP 96
AS +LA ++ PA+ N+Y +G + N++ I I D RGY+I +K
Sbjct: 30 ASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQ------RGYIITNKHVI 83
Query: 97 GQSEQVSEFLQ 107
++Q+ LQ
Sbjct: 84 NDADQIIVALQ 94
>pdb|3LGT|A Chain A, Y162aH198P DOUBLE MUTANT OF DEGS-Deltapdz Protease
Length = 241
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 39 ASGDLAKKKTFPALFNLYRQGFLQS--NEVHIFGYARTKISDDELRNRIRGYLINDKSAP 96
AS +LA ++ PA+ N+Y +G + N++ I I D RGY+I +K
Sbjct: 30 ASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQ------RGYIITNKHVI 83
Query: 97 GQSEQVSEFLQ 107
++Q+ LQ
Sbjct: 84 NDADQIIVALQ 94
>pdb|2DI3|A Chain A, Crystal Structure Of The Transcriptional Factor Cgl2915
From Corynebacterium Glutamicum
pdb|2DI3|B Chain B, Crystal Structure Of The Transcriptional Factor Cgl2915
From Corynebacterium Glutamicum
Length = 239
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 94 SAPGQSEQVSEFLQLIKYVSGSYDTEEGFQLLDKEISAHESSK 136
+APGQ+ +S LQL+ G +D E QLL+ + H S++
Sbjct: 74 AAPGQALSLSVTLQLVTNQVGHHDIYETRQLLEGWAALHSSAE 116
>pdb|3M1G|A Chain A, The Structure Of A Putative Glutathione S-Transferase From
Corynebacterium Glutamicum
pdb|3M1G|B Chain B, The Structure Of A Putative Glutathione S-Transferase From
Corynebacterium Glutamicum
pdb|3M1G|C Chain C, The Structure Of A Putative Glutathione S-Transferase From
Corynebacterium Glutamicum
Length = 362
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 46 KKTFPALFN-LYRQGFLQSNEVHIFGYARTKISDDELRNRI--RGYLIND 92
K+ F + N +YR GF S E H Y R ++ D L +R+ R YL D
Sbjct: 190 KRIFTEVNNGVYRTGFAGSQEAHNEAYKRLWVALDWLEDRLSTRRYLXGD 239
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,014,791
Number of Sequences: 62578
Number of extensions: 684724
Number of successful extensions: 2091
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 2042
Number of HSP's gapped (non-prelim): 29
length of query: 517
length of database: 14,973,337
effective HSP length: 103
effective length of query: 414
effective length of database: 8,527,803
effective search space: 3530510442
effective search space used: 3530510442
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)