BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010133
(517 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 88/216 (40%), Gaps = 37/216 (17%)
Query: 202 FDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL 261
F +A + E K E++E + DF Y G +G LL GPPGTGK+ + A+A
Sbjct: 10 FKDMAGNEEAKEEVVE-IVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68
Query: 262 GYDIYDL------ELTEVHNNSELRKLL--MKTSSKSIIVIEDIDCSIXXXXXXXXXXXX 313
+ + E+ S +R L K + SII I++ID
Sbjct: 69 HVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAI------------- 115
Query: 314 XXXXXXXXXXYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNH 373
+ R G V G D TL+ LL DG S + I + TN
Sbjct: 116 -------------GKSRAAGGVVSGNDEREQ-TLNQLLAEMDGFGSEN-APVIVLAATNR 160
Query: 374 IEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYL 409
E LDPAL+R GR D + + + + +LK ++
Sbjct: 161 PEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 98/223 (43%), Gaps = 49/223 (21%)
Query: 184 LDSRGHPWESVSF--KHP-STFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGY 240
L+++ P S+ K P ST+D + ++ EI E ++ ++ G A +G
Sbjct: 126 LENKADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGV 185
Query: 241 LLYGPPGTGKSSMIAAMANYLGYDIYDLELTEV------HNNSELRKL--LMKTSSKSII 292
+LYGPPGTGK+ + A+A++ + E+ + +R+L + + + SII
Sbjct: 186 ILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSII 245
Query: 293 VIEDIDCSIXXXXXXXXXXXXXXXXXXXXXXYYEPEMRCGSGSVGGEDGNNS---ITLSG 349
+++ID GS V G G +S T+
Sbjct: 246 FMDEIDS-------------------------------IGSTRVEGSGGGDSEVQRTMLE 274
Query: 350 LLNFTDGLWSCCGSEKI-FVFTTNHIEKLDPALLRSGRMDMHI 391
LLN DG + S+ I + TN ++ LDPALLR GR+D I
Sbjct: 275 LLNQLDGFET---SKNIKIIMATNRLDILDPALLRPGRIDRKI 314
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 81/192 (42%), Gaps = 38/192 (19%)
Query: 210 EKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSM---IAAMANYLGYDIY 266
E+ IE ++++ +F S + + G +G LL GPPGTGK+ + +A AN + I
Sbjct: 22 EEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHIS 81
Query: 267 DLELTEVH---NNSELRKLL--MKTSSKSIIVIEDIDCSIXXXXXXXXXXXXXXXXXXXX 321
+ E+ + +R L K + I+ I++ID
Sbjct: 82 GSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAV--------------------- 120
Query: 322 XXYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPAL 381
G+G GG D TL+ LL DG S G I + TN + LDPAL
Sbjct: 121 ------GRHRGAGLGGGHDEREQ-TLNQLLVEMDGFDSKEGI--IVMAATNRPDILDPAL 171
Query: 382 LRSGRMDMHIFM 393
LR GR D I +
Sbjct: 172 LRPGRFDKKIVV 183
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 91/219 (41%), Gaps = 41/219 (18%)
Query: 200 STFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMAN 259
+TF +A E K E+ E L ++ S +QK G +G L+ GPPGTGK+ + A+A
Sbjct: 9 TTFADVAGCDEAKEEVAE-LVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 67
Query: 260 YLGYDIYDL------ELTEVHNNSELRKLL--MKTSSKSIIVIEDIDCSIXXXXXXXXXX 311
+ + E+ S +R + K ++ II I++ID
Sbjct: 68 EAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV----------- 116
Query: 312 XXXXXXXXXXXXYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVF-T 370
+ G+G GG D TL+ +L DG G+E I V
Sbjct: 117 ----------------GRQRGAGLGGGHD-EREQTLNQMLVEMDGFE---GNEGIIVIAA 156
Query: 371 TNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYL 409
TN + LDPALLR GR D + + +LK ++
Sbjct: 157 TNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 195
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 81/192 (42%), Gaps = 38/192 (19%)
Query: 210 EKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSM---IAAMANYLGYDIY 266
E+ IE ++++ +F S + + G +G LL GPPGTG + + +A AN + I
Sbjct: 22 EEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGEANVPFFHIS 81
Query: 267 DLELTEVH---NNSELRKLLMKTSSKS--IIVIEDIDCSIXXXXXXXXXXXXXXXXXXXX 321
+ E+ + +R L + + + I+ I++ID
Sbjct: 82 GSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAV--------------------- 120
Query: 322 XXYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPAL 381
G+G GG D TL+ LL DG S G I + TN + LDPAL
Sbjct: 121 ------GRHRGAGLGGGHDEREQ-TLNQLLVEMDGFDSKEGI--IVMAATNRPDILDPAL 171
Query: 382 LRSGRMDMHIFM 393
LR GR D I +
Sbjct: 172 LRPGRFDKKIVV 183
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 111/281 (39%), Gaps = 60/281 (21%)
Query: 211 KKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLEL 270
+K EI E ++ Y++ G RG LLYGPPGTGK+ ++ A+AN +
Sbjct: 180 QKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNG 239
Query: 271 TE-VHN-----NSELRKL--LMKTSSKSIIVIEDIDCSIXXXXXXXXXXXXXXXXXXXXX 322
+E VH +R + L + ++ SII I+++D
Sbjct: 240 SEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDS--------------------IAT 279
Query: 323 XYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALL 382
++ + G D L LL DG + + TN + LDPALL
Sbjct: 280 KRFDAQT--------GSDREVQRILIELLTQMDGFDQSTNVK--VIMATNRADTLDPALL 329
Query: 383 RSGRMDMHIFMSYCSYPALLILLKNYLGYXXXXXXXXXXXXXXXVVGKAEMTP-ADISEV 441
R GR+D I +P+L + L + + K + P AD+ +
Sbjct: 330 RPGRLDRKI-----EFPSLRDRRERRLIF-------------GTIASKMSLAPEADLDSL 371
Query: 442 LIKNKRDKCKAVRELLETLKVKAEKNVKHGGIIVKNSDYEE 482
+I+N + +++ ++A V+ ++ SD EE
Sbjct: 372 IIRNDSLSGAVIAAIMQEAGLRA---VRKNRYVILQSDLEE 409
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 105/244 (43%), Gaps = 51/244 (20%)
Query: 162 KANDIRRKNQDRLLYTNSRGGSLDSRGHPWESVSFKHPSTF-DTLAIDPEKKIE-IMEDL 219
K ND+ N+D L ++ DSR E V K T+ D +D K+IE ++E +
Sbjct: 141 KPNDLVGVNKDSYLILDTLPSEFDSRVKAME-VDEKPTETYSDVGGLD--KQIEELVEAI 197
Query: 220 KDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMI---AAMANYLGYDIYDLELTEVH-- 274
++ G +G L+YGPPGTGK+ + AA N + +L +++
Sbjct: 198 VLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIG 257
Query: 275 NNSELRK---LLMKTSSKSIIVIEDIDCSIXXXXXXXXXXXXXXXXXXXXXXYYEPEMRC 331
++L + L K + +II I+++D
Sbjct: 258 EGAKLVRDAFALAKEKAPTIIFIDELDA-------------------------------I 286
Query: 332 GSGSVGGE-DGNNSI--TLSGLLNFTDGLWSCCGSEKIFVF-TTNHIEKLDPALLRSGRM 387
G+ E G+ + T+ LLN DG S +++ V TN ++ LDPALLRSGR+
Sbjct: 287 GTKRFDSEKSGDREVQRTMLELLNQLDGFSS---DDRVKVLAATNRVDVLDPALLRSGRL 343
Query: 388 DMHI 391
D I
Sbjct: 344 DRKI 347
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 69/173 (39%), Gaps = 41/173 (23%)
Query: 227 SFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEV------HNNSELR 280
+ ++ G RG LLYGPPGTGK+ + A+AN G + + E+ + S LR
Sbjct: 228 ALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLR 287
Query: 281 KLL--MKTSSKSIIVIEDIDCSIXXXXXXXXXXXXXXXXXXXXXXYYEPEMRCGSGSVGG 338
K + ++ +II I+++D P+ G V
Sbjct: 288 KAFEEAEKNAPAIIFIDELDA-------------------------IAPKREKTHGEV-- 320
Query: 339 EDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHI 391
+S LL DGL + I + TN +DPAL R GR D +
Sbjct: 321 ----ERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSIDPALRRFGRFDREV 367
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/190 (20%), Positives = 76/190 (40%), Gaps = 40/190 (21%)
Query: 229 YQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEV------HNNSELRKL 282
+ K G +G L YGPPG GK+ + A+AN + ++ E+ + + +R++
Sbjct: 503 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREI 562
Query: 283 LMKT--SSKSIIVIEDIDCSIXXXXXXXXXXXXXXXXXXXXXXYYEPEMRCGSGSVGGED 340
K ++ ++ +++D SI
Sbjct: 563 FDKARQAAPCVLFFDELD-SIAKARGGNIGDGGGAADR---------------------- 599
Query: 341 GNNSITLSGLLNFTDGLWSCCGSEKIFVF-TTNHIEKLDPALLRSGRMDMHIFMSYCSYP 399
++ +L DG+ + + +F+ TN + +DPA+LR GR+D I++
Sbjct: 600 -----VINQILTEMDGMST---KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEK 651
Query: 400 ALLILLKNYL 409
+ + +LK L
Sbjct: 652 SRVAILKANL 661
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 69/173 (39%), Gaps = 41/173 (23%)
Query: 227 SFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEV------HNNSELR 280
+ ++ G RG LLYGPPGTGK+ + A+AN G + + E+ + S LR
Sbjct: 228 ALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLR 287
Query: 281 KLL--MKTSSKSIIVIEDIDCSIXXXXXXXXXXXXXXXXXXXXXXYYEPEMRCGSGSVGG 338
K + ++ +II I+++D P+ G V
Sbjct: 288 KAFEEAEKNAPAIIFIDELDA-------------------------IAPKREKTHGEV-- 320
Query: 339 EDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHI 391
+S LL DGL + I + TN +DPAL R GR D +
Sbjct: 321 ----ERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSIDPALRRFGRFDREV 367
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/190 (20%), Positives = 76/190 (40%), Gaps = 40/190 (21%)
Query: 229 YQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEV------HNNSELRKL 282
+ K G +G L YGPPG GK+ + A+AN + ++ E+ + + +R++
Sbjct: 503 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREI 562
Query: 283 LMKT--SSKSIIVIEDIDCSIXXXXXXXXXXXXXXXXXXXXXXYYEPEMRCGSGSVGGED 340
K ++ ++ +++D SI
Sbjct: 563 FDKARQAAPCVLFFDELD-SIAKARGGNIGDGGGAADR---------------------- 599
Query: 341 GNNSITLSGLLNFTDGLWSCCGSEKIFVF-TTNHIEKLDPALLRSGRMDMHIFMSYCSYP 399
++ +L DG+ + + +F+ TN + +DPA+LR GR+D I++
Sbjct: 600 -----VINQILTEMDGMST---KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEK 651
Query: 400 ALLILLKNYL 409
+ + +LK L
Sbjct: 652 SRVAILKANL 661
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 76/187 (40%), Gaps = 38/187 (20%)
Query: 228 FYQKTGRAWKRGYLLYGPPGTGKSSMIAAMA---NYLGYDIYDLELTE--VHNNSELRK- 281
++K G +G LLYGPPGTGK+ + A+A N + EL + + + L K
Sbjct: 42 LFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKD 101
Query: 282 --LLMKTSSKSIIVIEDIDCSIXXXXXXXXXXXXXXXXXXXXXXYYEPEMRCGSGSVGGE 339
L K + SII I++ID + ++ G
Sbjct: 102 IFKLAKEKAPSIIFIDEIDAIAAKR----------------------------TDALTGG 133
Query: 340 DGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYP 399
D TL LL DG + G KI + TN + LDPA+LR GR D I +
Sbjct: 134 DREVQRTLMQLLAEMDG-FDARGDVKI-IGATNRPDILDPAILRPGRFDRIIEVPAPDEK 191
Query: 400 ALLILLK 406
L +LK
Sbjct: 192 GRLEILK 198
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 69/173 (39%), Gaps = 41/173 (23%)
Query: 227 SFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEV------HNNSELR 280
+ ++ G RG LLYGPPGTGK+ + A+AN G + + E+ + S LR
Sbjct: 228 ALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLR 287
Query: 281 KLL--MKTSSKSIIVIEDIDCSIXXXXXXXXXXXXXXXXXXXXXXYYEPEMRCGSGSVGG 338
K + ++ +II I+++D P+ G V
Sbjct: 288 KAFEEAEKNAPAIIFIDELDA-------------------------IAPKREKTHGEV-- 320
Query: 339 EDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHI 391
+S LL DGL + I + TN +DPAL R GR D +
Sbjct: 321 ----ERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSIDPALRRFGRFDREV 367
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 69/173 (39%), Gaps = 41/173 (23%)
Query: 227 SFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEV------HNNSELR 280
+ ++ G RG LLYGPPGTGK+ + A+AN G + + E+ + S LR
Sbjct: 228 ALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLR 287
Query: 281 KLL--MKTSSKSIIVIEDIDCSIXXXXXXXXXXXXXXXXXXXXXXYYEPEMRCGSGSVGG 338
K + ++ +II I+++D P+ G V
Sbjct: 288 KAFEEAEKNAPAIIFIDELDA-------------------------IAPKREKTHGEV-- 320
Query: 339 EDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHI 391
+S LL DGL + I + TN +DPAL R GR D +
Sbjct: 321 ----ERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSIDPALRRFGRFDREV 367
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 69/173 (39%), Gaps = 41/173 (23%)
Query: 227 SFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEV------HNNSELR 280
+ ++ G RG LLYGPPGTGK+ + A+AN G + + E+ + S LR
Sbjct: 228 ALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLR 287
Query: 281 KLL--MKTSSKSIIVIEDIDCSIXXXXXXXXXXXXXXXXXXXXXXYYEPEMRCGSGSVGG 338
K + ++ +II I+++D P+ G V
Sbjct: 288 KAFEEAEKNAPAIIFIDELDA-------------------------IAPKREKTHGEV-- 320
Query: 339 EDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHI 391
+S LL DGL + I + TN +DPAL R GR D +
Sbjct: 321 ----ERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSIDPALRRFGRFDREV 367
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 69/173 (39%), Gaps = 41/173 (23%)
Query: 227 SFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEV------HNNSELR 280
+ ++ G RG LLYGPPGTGK+ + A+AN G + + E+ + S LR
Sbjct: 228 ALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLR 287
Query: 281 KLL--MKTSSKSIIVIEDIDCSIXXXXXXXXXXXXXXXXXXXXXXYYEPEMRCGSGSVGG 338
K + ++ +II I+++D P+ G V
Sbjct: 288 KAFEEAEKNAPAIIFIDELDA-------------------------IAPKREKTHGEV-- 320
Query: 339 EDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHI 391
+S LL DGL + I + TN +DPAL R GR D +
Sbjct: 321 ----ERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSIDPALRRFGRFDREV 367
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 82/203 (40%), Gaps = 46/203 (22%)
Query: 201 TFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANY 260
TFD + E+ E+ E ++ +Q+ G +G LLYGPPGTGK+ + A+A
Sbjct: 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT 238
Query: 261 LGYD--------IYDLELTEVHNNSELRKLL--MKTSSKSIIVIEDIDCSIXXXXXXXXX 310
+G + I D + E + +R++ K II ++++D
Sbjct: 239 IGANFIFSPASGIVDKYIGE--SARIIREMFAYAKEHEPCIIFMDEVDAI---------- 286
Query: 311 XXXXXXXXXXXXXYYEPEMRCGSGSVGGEDGNNSI--TLSGLLNFTDGLWSCCGSEKIFV 368
G G + I TL LL DG + G KI +
Sbjct: 287 --------------------GGRRFSEGTSADREIQRTLMELLTQMDG-FDNLGQTKI-I 324
Query: 369 FTTNHIEKLDPALLRSGRMDMHI 391
TN + LDPALLR GR+D +
Sbjct: 325 MATNRPDTLDPALLRPGRLDRKV 347
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 74/173 (42%), Gaps = 38/173 (21%)
Query: 228 FYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYD---IYDLELTE--VHNNSELRKL 282
Y++ G +G +LYG PGTGK+ + A+AN I EL + + + L +
Sbjct: 207 LYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQ 266
Query: 283 LMKTS---SKSIIVIEDIDCSIXXXXXXXXXXXXXXXXXXXXXXYYEPEMRCGSGSVGGE 339
+ K + + SI+ I++ID R S S GGE
Sbjct: 267 IFKVAGENAPSIVFIDEIDAIGTK--------------------------RYDSNS-GGE 299
Query: 340 DGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIF 392
L LLN DG + G K+ + TN IE LDPAL+R GR+D I
Sbjct: 300 REIQRTMLE-LLNQLDG-FDDRGDVKV-IMATNKIETLDPALIRPGRIDRKIL 349
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 77/188 (40%), Gaps = 43/188 (22%)
Query: 229 YQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHN------NSELRKL 282
++ G G LL GPPG GK+ + A+AN G + ++ E+ N +R++
Sbjct: 36 FKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQV 95
Query: 283 LM--KTSSKSIIVIEDIDCSIXXXXXXXXXXXXXXXXXXXXXXYYEPEMRCGSGSVGGED 340
K S+ +I +++D C S E
Sbjct: 96 FQRAKNSAPCVIFFDEVDA------------------------------LCPRRS-DRET 124
Query: 341 GNNSITLSGLLNFTDGLWSCCGSEKIFVF-TTNHIEKLDPALLRSGRMDMHIFMSYCSYP 399
G + ++ LL DGL + +++F+ TN + +DPA+LR GR+D +F+
Sbjct: 125 GASVRVVNQLLTEMDGLEA---RQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPA 181
Query: 400 ALLILLKN 407
L +LK
Sbjct: 182 DRLAILKT 189
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 70/181 (38%), Gaps = 42/181 (23%)
Query: 221 DFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL--------GYDIYDLELTE 272
+F S + + G +G LL GPPG GK+ + A+A G D +E+
Sbjct: 48 EFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF--VEMFV 105
Query: 273 VHNNSELRKLL--MKTSSKSIIVIEDIDCSIXXXXXXXXXXXXXXXXXXXXXXYYEPEMR 330
+ +R L K + I+ I++ID +
Sbjct: 106 GVGAARVRDLFETAKRHAPCIVFIDEIDAV---------------------------GRK 138
Query: 331 CGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMH 390
GSG VGG + TL+ LL DG + + TN + LDPALLR GR D
Sbjct: 139 RGSG-VGGGNDEREQTLNQLLVEMDGFEKDTAI--VVMAATNRPDILDPALLRPGRFDRQ 195
Query: 391 I 391
I
Sbjct: 196 I 196
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 75/206 (36%), Gaps = 69/206 (33%)
Query: 199 PSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMA 258
P F TL IDP K G LLYGPPGTGK+ A+A
Sbjct: 232 PERFATLGIDPPK---------------------------GILLYGPPGTGKTLCARAVA 264
Query: 259 NYLGYDIYDL---ELTEVHNNSELRKL-----LMKTSSKSIIVIEDIDCSIXXXXXXXXX 310
N + EL + + R + + +T II ++ID
Sbjct: 265 NRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAV---------- 314
Query: 311 XXXXXXXXXXXXXYYEPEMRCGSGSVGGEDGNNSI--TLSGLLNFTDGLWSCCGSEKIFV 368
G+ G G+N + T+ L+ DG + G+ K+ +
Sbjct: 315 --------------------GGARFDDGAGGDNEVQRTMLELITQLDG-FDPRGNIKV-M 352
Query: 369 FTTNHIEKLDPALLRSGRMDMHIFMS 394
F TN LDPALLR GR+D + S
Sbjct: 353 FATNRPNTLDPALLRPGRIDRKVEFS 378
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 70/181 (38%), Gaps = 42/181 (23%)
Query: 221 DFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL--------GYDIYDLELTE 272
+F S + + G +G LL GPPG GK+ + A+A G D +E+
Sbjct: 57 EFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF--VEMFV 114
Query: 273 VHNNSELRKLL--MKTSSKSIIVIEDIDCSIXXXXXXXXXXXXXXXXXXXXXXYYEPEMR 330
+ +R L K + I+ I++ID +
Sbjct: 115 GVGAARVRDLFETAKRHAPCIVFIDEIDAV---------------------------GRK 147
Query: 331 CGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMH 390
GSG VGG + TL+ LL DG + + TN + LDPALLR GR D
Sbjct: 148 RGSG-VGGGNDEREQTLNQLLVEMDGFEKDTAI--VVMAATNRPDILDPALLRPGRFDRQ 204
Query: 391 I 391
I
Sbjct: 205 I 205
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 70/181 (38%), Gaps = 42/181 (23%)
Query: 221 DFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL--------GYDIYDLELTE 272
+F S + + G +G LL GPPG GK+ + A+A G D +E+
Sbjct: 33 EFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF--VEMFV 90
Query: 273 VHNNSELRKLL--MKTSSKSIIVIEDIDCSIXXXXXXXXXXXXXXXXXXXXXXYYEPEMR 330
+ +R L K + I+ I++ID +
Sbjct: 91 GVGAARVRDLFETAKRHAPCIVFIDEIDAV---------------------------GRK 123
Query: 331 CGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMH 390
GSG GG D TL+ LL DG + + + TN + LDPALLR GR D
Sbjct: 124 RGSGVGGGND-EREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDILDPALLRPGRFDRQ 180
Query: 391 I 391
I
Sbjct: 181 I 181
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 84/201 (41%), Gaps = 38/201 (18%)
Query: 201 TFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANY 260
+F +A E K+E+ E D+ + + G +G LL GPPG GK+ + A+A
Sbjct: 4 SFKDVAGMHEAKLEVRE-FVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE 62
Query: 261 LGYDIYDL---ELTEVHNN---SELRKLLMKTSSKS--IIVIEDIDCSIXXXXXXXXXXX 312
+ E EV + +R L + +++ I+ I++ID
Sbjct: 63 AQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAV------------ 110
Query: 313 XXXXXXXXXXXYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTN 372
+ R + S G + TL+ LL DG+ + I + +TN
Sbjct: 111 --------------GKKRSTTMS-GFSNTEEEQTLNQLLVEMDGMGTT--DHVIVLASTN 153
Query: 373 HIEKLDPALLRSGRMDMHIFM 393
+ LD AL+R GR+D H+F+
Sbjct: 154 RADILDGALMRPGRLDRHVFI 174
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 71/181 (39%), Gaps = 42/181 (23%)
Query: 221 DFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL--------GYDIYDLELTE 272
+F S + + G +G LL GPPG GK+ + A+A G D +E+
Sbjct: 57 EFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF--VEMFV 114
Query: 273 VHNNSELRKLL--MKTSSKSIIVIEDIDCSIXXXXXXXXXXXXXXXXXXXXXXYYEPEMR 330
+ +R L K + I+ I++ID +
Sbjct: 115 GVGAARVRDLFETAKRHAPCIVFIDEIDAV---------------------------GRK 147
Query: 331 CGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMH 390
GSG VGG + TL+ LL DG + + + TN + LDPALLR GR D
Sbjct: 148 RGSG-VGGGNDEREQTLNQLLVEMDGFEKD--TAIVVMAATNRPDILDPALLRPGRFDRQ 204
Query: 391 I 391
I
Sbjct: 205 I 205
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 224 NGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNNSEL 279
N K G R +LYGPPG GK++ +A LGYDI + ++V + + L
Sbjct: 64 NSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLL 119
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 68/159 (42%), Gaps = 41/159 (25%)
Query: 234 RAWKRGYLLYGPPGTGKSSM---IAAMANYLGYDIYDLELTE--VHNNSELRKLLMKTSS 288
RA RG LL+GPPG GK+ + +AA +N ++I LT V +L + L +
Sbjct: 145 RAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVAR 204
Query: 289 K---SIIVIEDIDCSIXXXXXXXXXXXXXXXXXXXXXXYYEPEMRCGSGSVGGEDGNNSI 345
+ SII I+ +D + E R G D + +
Sbjct: 205 ELQPSIIFIDQVDSLLC-------------------------ERREGE-----HDASRRL 234
Query: 346 TLSGLLNFTDGLWSCCGSEKIFVF-TTNHIEKLDPALLR 383
L+ F DG+ S G +++ V TN ++LD A+LR
Sbjct: 235 KTEFLIEF-DGVQS-AGDDRVLVMGATNRPQELDEAVLR 271
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 83/190 (43%), Gaps = 40/190 (21%)
Query: 229 YQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEV------HNNSELRKL 282
+ K G +G L YGPPG GK+ + A+AN + ++ E+ + + +R++
Sbjct: 41 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREI 100
Query: 283 LMKT--SSKSIIVIEDIDCSIXXXXXXXXXXXXXXXXXXXXXXYYEPEMRCGSGSVGGED 340
K ++ ++ +++D SI + R G+ GG
Sbjct: 101 FDKARQAAPCVLFFDELD-SIA-------------------------KARGGNIGDGGGA 134
Query: 341 GNNSITLSGLLNFTDGLWSCCGSEKIFVF-TTNHIEKLDPALLRSGRMDMHIFMSYCSYP 399
+ I + +L DG+ + + +F+ TN + +DPA+LR GR+D I++
Sbjct: 135 ADRVI--NQILTEMDGMST---KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEK 189
Query: 400 ALLILLKNYL 409
+ + +LK L
Sbjct: 190 SRVAILKANL 199
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 231 KTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNN--SELRKL------ 282
K R G LLYGPPGTGKS + A+A + + +++ + E KL
Sbjct: 54 KGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFA 113
Query: 283 LMKTSSKSIIVIEDIDC 299
+ + + SII I+++D
Sbjct: 114 MARENKPSIIFIDEVDA 130
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 231 KTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDI 265
K+ + R LL GPPGTGK+++ A+A LG +
Sbjct: 71 KSKKXAGRAVLLAGPPGTGKTALALAIAQELGSKV 105
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 231 KTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNN--SELRKL------ 282
K R G LLYGPPGTGKS + A+A + + +++ + E KL
Sbjct: 78 KGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFA 137
Query: 283 LMKTSSKSIIVIEDIDC 299
+ + + SII I+ +D
Sbjct: 138 MARENKPSIIFIDQVDA 154
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 231 KTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDI 265
K+ + R LL GPPGTGK+++ A+A LG +
Sbjct: 57 KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKV 91
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 238 RGYLLYGPPGTGKSSMIAAMA------NYLGYDIYDLELTEVHNNSELRK---LLMKTSS 288
RG LL+GPPGTGKS + A+A + DL + + +L K L + +
Sbjct: 46 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK 105
Query: 289 KSIIVIEDIDC 299
SII I++ID
Sbjct: 106 PSIIFIDEIDS 116
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 231 KTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNN--SELRKL------ 282
K R G LLYGPPGTGKS + A+A + + +++ + E KL
Sbjct: 63 KGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFA 122
Query: 283 LMKTSSKSIIVIEDIDC 299
+ + + SII I+ +D
Sbjct: 123 MARENKPSIIFIDQVDA 139
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 238 RGYLLYGPPGTGKSSMIAAMA------NYLGYDIYDLELTEVHNNSELRK---LLMKTSS 288
RG LL+GPPGTGKS + A+A + DL + + +L K L + +
Sbjct: 168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK 227
Query: 289 KSIIVIEDID 298
SII I++ID
Sbjct: 228 PSIIFIDEID 237
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 230 QKTGRAWKRGYL-LYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNNSELR 280
QK ++ K L L GPPG GK+S+ ++A LG + L V + SE+R
Sbjct: 100 QKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIR 151
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 231 KTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNN--SELRKL------ 282
K R G LLYGPPGTGKS + A+A + + +++ + E KL
Sbjct: 45 KGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFA 104
Query: 283 LMKTSSKSIIVIEDIDC 299
+ + + SII I+ +D
Sbjct: 105 MARENKPSIIFIDQVDA 121
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 234 RAWKRGYLLYGPPGTGKSSMIAAM-----ANYLGYDIYDLELTEVHNNSELRKLLMKTS- 287
RA +G LL+GPPG GK+ + A+ A +L L V + +L + L +
Sbjct: 51 RAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVAR 110
Query: 288 --SKSIIVIEDID 298
SII I+++D
Sbjct: 111 HMQPSIIFIDEVD 123
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 211 KKIEIMEDLKDFANGMSFYQ---KTGRAWKRGYLLYGPPGTGKSSMIAAMANYL 261
++IE+ E L D G KT KR LL G PGTGKS + AMA L
Sbjct: 31 EEIEVPEKLIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELL 84
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 241 LLYGPPGTGKSSMIAAMA 258
L YGPPGTGK+S I A+A
Sbjct: 50 LFYGPPGTGKTSTIVALA 67
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 234 RAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEV------HNNSELRKL--LMK 285
R +G LL+GPPGTGK+ + +A+ G + + + + +R L + +
Sbjct: 114 RGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVAR 173
Query: 286 TSSKSIIVIEDID 298
++I I++ID
Sbjct: 174 CQQPAVIFIDEID 186
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 231 KTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYD 264
+ G+ R L+ G PGTGK+++ MA LG D
Sbjct: 64 REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD 97
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 241 LLYGPPGTGKSSMIAAMANYL-GYDIYDLELTEVHNNSE 278
L YGPPGTGK+S I A+ L G D+ + E++ + E
Sbjct: 62 LFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDE 100
>pdb|2QGZ|A Chain A, Crystal Structure Of A Putative Primosome Component From
Streptococcus Pyogenes Serotype M3. Northeast Structural
Genomics Target Dr58
Length = 308
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 219 LKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLG 262
++ F+ + F ++ A ++G LYG G GKS ++AAMA+ L
Sbjct: 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS 177
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 27/169 (15%)
Query: 113 VLWEHVVSP-RQTQTFS--WRPLPEEKRGFTLR-------IKKKDKSLILDSYLDF--IM 160
V+W +V QT FS W+ + + +G + +KKK ++L+++ YL F ++
Sbjct: 510 VMWTELVEKCLQTNQFSKYWKEVDMKIKGLLDKLNKSSDNVKKKIEALLVE-YLHFNNVI 568
Query: 161 EKANDIRRKNQDRLLYTN-----SRGGSLDSRGHPWESVS-FKHPSTFDTLAIDPEKKIE 214
+ + K + RLL+ + +LD + S S + F+ + I PE+ I
Sbjct: 569 GQLKNCSTKEEARLLWAKVQKFYQKNDTLDDLNSVFISQSGYLLQYKFEYIGI-PERLIY 627
Query: 215 IMEDLKDFANGM-SFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLG 262
L FA S +QK G + +GP GTGK+ + A LG
Sbjct: 628 TPLLLIGFATLTDSLHQKYGGCF------FGPAGTGKTETVKAFGQNLG 670
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 237 KRGYLLYGPPGTGKSSMI-AAMANYLGYDIYDLELTE 272
KRG +L GPPG+GK+ ++ A+ N YD+ + ++
Sbjct: 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSK 1303
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 27/169 (15%)
Query: 113 VLWEHVVSP-RQTQTFS--WRPLPEEKRGFTLR-------IKKKDKSLILDSYLDF--IM 160
V+W +V QT FS W+ + + +G + +KKK ++L+++ YL F ++
Sbjct: 291 VMWTELVEKCLQTNEFSKYWKEVDMKIKGLLDKLNKSSDNVKKKIEALLVE-YLHFNNVI 349
Query: 161 EKANDIRRKNQDRLLYTN-----SRGGSLDSRGHPWESVS-FKHPSTFDTLAIDPEKKIE 214
+ + K + RLL+ + +LD + S S + F+ + I PE+ I
Sbjct: 350 GQLKNCSTKEEARLLWAKVQKFYQKNDTLDDLNSVFISQSGYLLQYKFEYIGI-PERLIY 408
Query: 215 IMEDLKDFANGM-SFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLG 262
L FA S +QK G + +GP GTGK+ + A LG
Sbjct: 409 TPLLLIGFATLTDSLHQKYGGCF------FGPAGTGKTETVKAFGQNLG 451
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 237 KRGYLLYGPPGTGKSSMI-AAMANYLGYDIYDLELTE 272
KRG +L GPPG+GK+ ++ A+ N YD+ + ++
Sbjct: 1048 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSK 1084
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 200 STFDTLA--IDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAM 257
+TF LA + PE + + A G + +L+GPPGTGK+++ +
Sbjct: 11 NTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVI 70
Query: 258 ANYLGYDI 265
A Y D+
Sbjct: 71 ARYANADV 78
>pdb|3JVV|A Chain A, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|B Chain B, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|C Chain C, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVU|A Chain A, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|B Chain B, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|C Chain C, Crystal Structure Of Unliganded P. Aeruginosa Pilt
Length = 356
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 212 KIEIMEDLKDFANGMSFYQKTGRAWKRGYLLY-GPPGTGKSSMIAAMANYLGYDIYDLEL 270
K+ ME+L GM K RG +L GP G+GKS+ +AAM +YL Y L
Sbjct: 102 KVLTMEEL-----GMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHIL 156
Query: 271 T 271
T
Sbjct: 157 T 157
>pdb|1ZU4|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group P21212
pdb|1ZU5|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
pdb|1ZU5|B Chain B, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
Length = 320
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Query: 240 YLLYGPPGTGKSSMIAAMANY---LGYDI 265
++L G GTGK++ +A MANY LGY +
Sbjct: 108 FMLVGVNGTGKTTSLAKMANYYAELGYKV 136
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 235 AWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYD 267
A KR L GP G GKS++ +A L + YD
Sbjct: 2 AEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 241 LLYGPPGTGKSSMIAAMANYLGYDI 265
LL+GPPG GK+++ +A+ LG ++
Sbjct: 42 LLFGPPGLGKTTLAHVIAHELGVNL 66
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 241 LLYGPPGTGKSSMIAAMANYLGYDI 265
LL+GPPG GK+++ +A+ LG ++
Sbjct: 42 LLFGPPGLGKTTLAHVIAHELGVNL 66
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 241 LLYGPPGTGKSSMIAAMANYLGYDI 265
LL+GPPG GK+++ +A+ LG ++
Sbjct: 42 LLFGPPGLGKTTLAHVIAHELGVNL 66
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 20/98 (20%)
Query: 209 PEK-KIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYD 267
PE+ +IEI++ G+SF + G+ L GP G GKS+++A + + YD
Sbjct: 1087 PERPEIEILK-------GLSFSVEPGQTLA----LVGPSGCGKSTVVALLERF--YDTLG 1133
Query: 268 LELTEVHNNSELRKLLMKTSSKSIIVIED----IDCSI 301
E+ + SE++ L + + I ++ DCSI
Sbjct: 1134 GEI--FIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSI 1169
>pdb|3NWJ|A Chain A, Crystal Structure Of Shikimate Kinase From Arabidopsis
Thaliana (Atsk2)
pdb|3NWJ|B Chain B, Crystal Structure Of Shikimate Kinase From Arabidopsis
Thaliana (Atsk2)
Length = 250
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 14/62 (22%)
Query: 208 DPEKKI--EIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDI 265
D E++I + E++K + NG S Y L G G+GK+++ MA LGY
Sbjct: 29 DEEQQILKKKAEEVKPYLNGRSMY------------LVGMMGSGKTTVGKIMARSLGYTF 76
Query: 266 YD 267
+D
Sbjct: 77 FD 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,255,811
Number of Sequences: 62578
Number of extensions: 556359
Number of successful extensions: 1703
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1616
Number of HSP's gapped (non-prelim): 94
length of query: 517
length of database: 14,973,337
effective HSP length: 103
effective length of query: 414
effective length of database: 8,527,803
effective search space: 3530510442
effective search space used: 3530510442
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)