Query 010133
Match_columns 517
No_of_seqs 439 out of 3703
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 21:26:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010133.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010133hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0743 AAA+-type ATPase [Post 100.0 2E-100 4E-105 780.1 39.4 442 2-472 1-443 (457)
2 COG1222 RPT1 ATP-dependent 26S 100.0 2.8E-42 6.1E-47 342.5 20.9 238 195-465 143-394 (406)
3 KOG0734 AAA+-type ATPase conta 100.0 4.4E-39 9.5E-44 331.1 17.0 210 199-445 300-517 (752)
4 KOG0730 AAA+-type ATPase [Post 100.0 4.4E-38 9.6E-43 332.7 20.0 213 196-444 427-647 (693)
5 KOG0731 AAA+-type ATPase conta 100.0 1.4E-36 3E-41 330.3 26.0 215 197-443 305-527 (774)
6 KOG0733 Nuclear AAA ATPase (VC 100.0 4.3E-36 9.4E-41 313.4 21.0 215 198-445 506-729 (802)
7 KOG0733 Nuclear AAA ATPase (VC 100.0 4.8E-36 1E-40 313.0 19.0 221 200-458 187-417 (802)
8 KOG0727 26S proteasome regulat 100.0 4.9E-34 1.1E-38 271.0 17.1 215 197-444 149-371 (408)
9 COG0465 HflB ATP-dependent Zn 100.0 9.1E-34 2E-38 303.7 19.0 213 197-443 144-364 (596)
10 KOG0728 26S proteasome regulat 100.0 1.1E-33 2.3E-38 268.4 16.2 213 198-443 142-362 (404)
11 KOG0738 AAA+-type ATPase [Post 100.0 4.8E-33 1E-37 278.2 19.1 255 198-508 207-472 (491)
12 KOG0736 Peroxisome assembly fa 100.0 5.4E-33 1.2E-37 296.6 20.4 215 197-443 666-889 (953)
13 PTZ00454 26S protease regulato 100.0 1.7E-32 3.6E-37 287.4 23.0 235 196-463 138-386 (398)
14 KOG0726 26S proteasome regulat 100.0 1.2E-33 2.5E-38 273.1 11.4 216 195-443 177-400 (440)
15 KOG0652 26S proteasome regulat 100.0 2.9E-32 6.2E-37 260.0 16.6 215 196-443 164-386 (424)
16 PRK03992 proteasome-activating 100.0 6.8E-31 1.5E-35 275.9 22.6 238 196-466 124-375 (389)
17 TIGR03689 pup_AAA proteasome A 100.0 8.7E-31 1.9E-35 279.8 23.6 183 197-411 176-380 (512)
18 KOG0729 26S proteasome regulat 100.0 1.5E-31 3.3E-36 255.7 15.9 217 194-443 168-392 (435)
19 TIGR01241 FtsH_fam ATP-depende 100.0 5.2E-31 1.1E-35 285.4 22.0 234 197-464 49-296 (495)
20 CHL00195 ycf46 Ycf46; Provisio 100.0 2.9E-31 6.3E-36 283.7 18.5 208 198-444 223-439 (489)
21 PTZ00361 26 proteosome regulat 100.0 1.3E-30 2.8E-35 274.9 20.9 236 195-463 175-424 (438)
22 KOG0739 AAA+-type ATPase [Post 100.0 2.4E-31 5.3E-36 257.8 11.8 208 198-442 128-343 (439)
23 KOG0735 AAA+-type ATPase [Post 100.0 2.4E-30 5.2E-35 274.1 20.0 223 200-464 664-894 (952)
24 TIGR01243 CDC48 AAA family ATP 100.0 9.1E-30 2E-34 287.7 25.3 212 198-444 448-667 (733)
25 CHL00176 ftsH cell division pr 100.0 5.1E-30 1.1E-34 282.0 21.2 213 197-443 177-397 (638)
26 COG1223 Predicted ATPase (AAA+ 100.0 5.6E-30 1.2E-34 244.5 16.9 207 198-445 116-330 (368)
27 KOG0737 AAA+-type ATPase [Post 100.0 6.2E-30 1.3E-34 256.0 16.8 261 199-504 88-357 (386)
28 COG0464 SpoVK ATPases of the A 100.0 2.9E-29 6.2E-34 272.1 21.7 214 197-445 236-458 (494)
29 CHL00206 ycf2 Ycf2; Provisiona 100.0 3E-29 6.4E-34 289.5 20.6 180 225-443 1618-1851(2281)
30 TIGR01242 26Sp45 26S proteasom 100.0 9.5E-28 2.1E-32 250.5 21.1 216 196-444 115-338 (364)
31 PRK10733 hflB ATP-dependent me 100.0 8.7E-28 1.9E-32 266.7 21.7 213 198-444 147-367 (644)
32 KOG0651 26S proteasome regulat 100.0 2.3E-28 5E-33 238.7 12.9 210 201-443 130-347 (388)
33 PLN00020 ribulose bisphosphate 100.0 2.1E-27 4.6E-32 240.1 19.3 167 228-428 139-328 (413)
34 KOG0730 AAA+-type ATPase [Post 99.9 1.9E-26 4.2E-31 244.6 19.7 256 198-492 180-448 (693)
35 TIGR01243 CDC48 AAA family ATP 99.9 1.4E-25 2.9E-30 253.8 23.6 210 198-443 173-390 (733)
36 KOG0741 AAA+-type ATPase [Post 99.9 7.5E-26 1.6E-30 233.6 13.1 215 195-444 211-450 (744)
37 KOG0732 AAA+-type ATPase conta 99.9 2.6E-25 5.6E-30 248.1 17.3 211 198-443 260-483 (1080)
38 KOG0740 AAA+-type ATPase [Post 99.9 9.5E-25 2.1E-29 225.9 15.2 221 199-455 149-377 (428)
39 PF14363 AAA_assoc: Domain ass 99.9 1.9E-21 4.1E-26 164.7 10.6 96 25-120 1-97 (98)
40 PF00004 AAA: ATPase family as 99.8 1.4E-20 3E-25 166.7 11.4 123 240-395 1-132 (132)
41 KOG0742 AAA+-type ATPase [Post 99.8 7E-20 1.5E-24 184.7 14.4 203 198-443 350-586 (630)
42 PF05496 RuvB_N: Holliday junc 99.8 9.7E-19 2.1E-23 167.1 19.1 179 197-427 18-210 (233)
43 KOG0744 AAA+-type ATPase [Post 99.8 1.8E-18 4E-23 170.3 13.8 177 202-409 141-340 (423)
44 PRK00080 ruvB Holliday junctio 99.8 1.5E-17 3.2E-22 171.5 20.3 192 197-443 19-224 (328)
45 TIGR02881 spore_V_K stage V sp 99.8 3E-17 6.5E-22 163.8 21.3 184 202-427 5-209 (261)
46 CHL00181 cbbX CbbX; Provisiona 99.8 4.4E-17 9.6E-22 164.4 19.6 178 203-421 23-221 (287)
47 TIGR00635 ruvB Holliday juncti 99.7 4.6E-17 1E-21 165.8 18.8 176 200-427 1-190 (305)
48 TIGR02880 cbbX_cfxQ probable R 99.7 6.2E-17 1.4E-21 163.3 18.8 181 204-425 23-224 (284)
49 PRK04195 replication factor C 99.7 5.4E-16 1.2E-20 167.8 20.0 180 190-427 3-191 (482)
50 PF05673 DUF815: Protein of un 99.7 1.6E-15 3.5E-20 146.8 20.1 179 190-420 14-218 (249)
51 TIGR00763 lon ATP-dependent pr 99.7 1.3E-15 2.9E-20 173.2 20.4 158 204-409 321-505 (775)
52 KOG0736 Peroxisome assembly fa 99.7 1.9E-15 4.2E-20 162.9 19.5 239 218-494 412-688 (953)
53 PLN03025 replication factor C 99.7 1.9E-15 4.1E-20 155.2 17.2 171 194-426 4-188 (319)
54 PRK14962 DNA polymerase III su 99.7 2.4E-15 5.2E-20 161.3 18.5 169 196-425 7-205 (472)
55 TIGR02639 ClpA ATP-dependent C 99.7 1.3E-15 2.9E-20 172.3 17.2 157 198-409 177-358 (731)
56 PRK14956 DNA polymerase III su 99.7 2E-15 4.4E-20 159.9 17.3 170 196-426 11-210 (484)
57 COG2255 RuvB Holliday junction 99.7 3.3E-15 7.1E-20 145.7 17.2 178 198-427 21-212 (332)
58 PRK12323 DNA polymerase III su 99.7 1.5E-15 3.3E-20 164.7 16.4 171 196-427 9-214 (700)
59 KOG0735 AAA+-type ATPase [Post 99.7 3.6E-15 7.7E-20 159.6 18.8 199 203-443 408-618 (952)
60 PHA02544 44 clamp loader, smal 99.7 1.1E-14 2.3E-19 149.2 21.8 157 189-408 9-172 (316)
61 PRK07003 DNA polymerase III su 99.7 3E-15 6.4E-20 164.3 18.4 171 196-427 9-209 (830)
62 COG2256 MGS1 ATPase related to 99.7 1.9E-15 4E-20 153.8 15.6 150 198-409 19-176 (436)
63 PRK14960 DNA polymerase III su 99.6 5.4E-15 1.2E-19 160.8 18.8 171 196-427 8-208 (702)
64 PRK14961 DNA polymerase III su 99.6 1.3E-14 2.9E-19 151.4 18.4 171 196-427 9-209 (363)
65 KOG0989 Replication factor C, 99.6 2.8E-15 6.1E-20 147.5 12.3 172 194-427 27-219 (346)
66 PRK06645 DNA polymerase III su 99.6 2.1E-14 4.5E-19 154.8 18.8 170 196-426 14-217 (507)
67 PRK13342 recombination factor 99.6 1.4E-14 3E-19 154.0 17.2 169 196-426 5-184 (413)
68 PRK14958 DNA polymerase III su 99.6 1.8E-14 4E-19 156.0 17.4 168 196-424 9-206 (509)
69 PRK14964 DNA polymerase III su 99.6 3E-14 6.5E-19 152.5 18.0 170 196-426 6-205 (491)
70 TIGR02397 dnaX_nterm DNA polym 99.6 5.3E-14 1.1E-18 146.2 19.0 171 196-427 7-207 (355)
71 PRK08691 DNA polymerase III su 99.6 3.4E-14 7.4E-19 155.8 17.8 171 196-427 9-209 (709)
72 PRK14949 DNA polymerase III su 99.6 4.3E-14 9.4E-19 157.9 18.6 171 196-427 9-209 (944)
73 TIGR03345 VI_ClpV1 type VI sec 99.6 1.8E-14 3.9E-19 164.7 16.1 174 198-427 182-385 (852)
74 PRK14963 DNA polymerase III su 99.6 7.4E-14 1.6E-18 151.0 20.0 169 196-425 7-204 (504)
75 PRK07994 DNA polymerase III su 99.6 4.3E-14 9.4E-19 155.5 18.2 169 197-426 10-208 (647)
76 PRK05563 DNA polymerase III su 99.6 6.9E-14 1.5E-18 153.3 19.7 170 197-427 10-209 (559)
77 PRK14970 DNA polymerase III su 99.6 1.1E-13 2.5E-18 144.8 20.4 171 196-427 10-198 (367)
78 PRK06893 DNA replication initi 99.6 9.8E-14 2.1E-18 135.9 18.0 177 194-425 7-190 (229)
79 PRK07764 DNA polymerase III su 99.6 6.7E-14 1.4E-18 158.5 18.9 164 196-420 8-203 (824)
80 PRK14951 DNA polymerase III su 99.6 6.7E-14 1.5E-18 153.6 17.8 170 196-426 9-213 (618)
81 PRK11034 clpA ATP-dependent Cl 99.6 3.8E-14 8.3E-19 159.3 16.0 195 201-461 184-407 (758)
82 PRK10865 protein disaggregatio 99.6 2.9E-14 6.3E-19 163.3 15.1 156 198-410 173-355 (857)
83 TIGR03420 DnaA_homol_Hda DnaA 99.6 1.1E-13 2.3E-18 134.7 17.0 174 195-426 7-189 (226)
84 PRK14952 DNA polymerase III su 99.6 8.8E-14 1.9E-18 152.1 17.9 170 196-426 6-207 (584)
85 COG0466 Lon ATP-dependent Lon 99.6 7.6E-14 1.7E-18 150.6 17.0 156 206-409 326-508 (782)
86 PRK14969 DNA polymerase III su 99.6 6.4E-14 1.4E-18 152.6 16.8 170 197-427 10-209 (527)
87 PRK05896 DNA polymerase III su 99.6 8.4E-14 1.8E-18 151.3 17.4 170 196-426 9-208 (605)
88 TIGR02640 gas_vesic_GvpN gas v 99.6 1.5E-13 3.3E-18 137.2 18.0 146 209-410 4-199 (262)
89 PRK07940 DNA polymerase III su 99.6 1.1E-13 2.4E-18 145.2 17.7 155 201-407 3-187 (394)
90 PRK14957 DNA polymerase III su 99.6 1.2E-13 2.6E-18 149.8 18.4 170 196-426 9-208 (546)
91 PRK07133 DNA polymerase III su 99.6 1.1E-13 2.3E-18 153.3 18.2 172 195-427 10-208 (725)
92 PRK12402 replication factor C 99.5 1.5E-13 3.3E-18 141.6 17.9 173 190-426 4-214 (337)
93 CHL00095 clpC Clp protease ATP 99.5 3.1E-14 6.7E-19 163.1 13.5 197 200-464 176-402 (821)
94 PRK14959 DNA polymerase III su 99.5 1.2E-13 2.5E-18 150.9 17.1 172 195-427 8-209 (624)
95 TIGR02902 spore_lonB ATP-depen 99.5 9.6E-14 2.1E-18 151.5 16.5 186 196-443 58-306 (531)
96 PRK05342 clpX ATP-dependent pr 99.5 2.6E-13 5.6E-18 143.2 19.0 100 202-301 69-186 (412)
97 KOG2004 Mitochondrial ATP-depe 99.5 2.1E-13 4.4E-18 146.5 17.4 157 206-410 414-597 (906)
98 PRK08903 DnaA regulatory inact 99.5 3.4E-13 7.5E-18 131.6 17.8 171 194-426 9-187 (227)
99 PRK14965 DNA polymerase III su 99.5 1.8E-13 3.9E-18 150.7 16.7 170 196-426 9-208 (576)
100 PRK06305 DNA polymerase III su 99.5 6.2E-13 1.3E-17 142.4 19.6 170 197-427 11-211 (451)
101 PRK09111 DNA polymerase III su 99.5 7.2E-13 1.5E-17 145.7 20.1 170 196-426 17-221 (598)
102 PRK00149 dnaA chromosomal repl 99.5 2.1E-13 4.6E-18 146.5 15.7 194 195-443 114-324 (450)
103 PRK14955 DNA polymerase III su 99.5 3E-13 6.5E-18 142.9 16.4 171 196-427 9-217 (397)
104 COG2607 Predicted ATPase (AAA+ 99.5 9.9E-13 2.1E-17 125.6 17.9 179 190-418 47-248 (287)
105 PRK14953 DNA polymerase III su 99.5 4.9E-13 1.1E-17 144.1 18.0 171 196-427 9-209 (486)
106 TIGR03346 chaperone_ClpB ATP-d 99.5 1.5E-13 3.3E-18 157.9 15.0 157 198-410 168-350 (852)
107 PRK00440 rfc replication facto 99.5 9.1E-13 2E-17 134.7 19.0 175 189-427 5-192 (319)
108 PRK10787 DNA-binding ATP-depen 99.5 8.2E-13 1.8E-17 149.6 19.7 160 202-410 320-507 (784)
109 PRK06647 DNA polymerase III su 99.5 5.8E-13 1.3E-17 145.7 17.8 170 196-426 9-208 (563)
110 PRK11034 clpA ATP-dependent Cl 99.5 5.5E-13 1.2E-17 150.0 18.1 158 204-409 459-666 (758)
111 TIGR00362 DnaA chromosomal rep 99.5 4.2E-13 9.1E-18 142.3 16.1 193 196-443 103-312 (405)
112 PRK08451 DNA polymerase III su 99.5 8.9E-13 1.9E-17 142.4 18.4 171 196-427 7-207 (535)
113 PRK14948 DNA polymerase III su 99.5 1.1E-12 2.3E-17 145.2 19.0 172 195-427 8-211 (620)
114 PRK08084 DNA replication initi 99.5 1.1E-12 2.4E-17 128.9 17.1 158 196-409 15-180 (235)
115 PRK14954 DNA polymerase III su 99.5 1.2E-12 2.6E-17 144.1 18.7 170 197-427 10-217 (620)
116 TIGR02928 orc1/cdc6 family rep 99.5 5.1E-12 1.1E-16 131.9 22.5 157 203-410 15-213 (365)
117 TIGR00382 clpX endopeptidase C 99.5 1.5E-12 3.3E-17 136.8 18.4 176 202-407 75-329 (413)
118 PRK13341 recombination factor 99.5 7.4E-13 1.6E-17 148.4 16.9 153 196-410 21-182 (725)
119 PRK08727 hypothetical protein; 99.5 1.3E-12 2.9E-17 128.2 16.5 174 195-426 11-192 (233)
120 PRK14950 DNA polymerase III su 99.5 1.6E-12 3.5E-17 143.7 18.8 170 196-426 9-209 (585)
121 PRK14971 DNA polymerase III su 99.5 2.3E-12 5.1E-17 142.5 19.6 170 196-426 10-210 (614)
122 PRK14088 dnaA chromosomal repl 99.4 1.3E-12 2.9E-17 139.5 14.4 192 196-443 98-307 (440)
123 PRK14086 dnaA chromosomal repl 99.4 2.2E-12 4.8E-17 140.4 16.2 193 195-443 280-490 (617)
124 PRK05642 DNA replication initi 99.4 4E-12 8.7E-17 124.9 15.9 196 195-463 11-215 (234)
125 PRK00411 cdc6 cell division co 99.4 2.2E-11 4.8E-16 128.4 22.6 175 202-428 29-241 (394)
126 TIGR01650 PD_CobS cobaltochela 99.4 2.3E-12 5E-17 130.8 13.8 129 237-409 64-233 (327)
127 COG0464 SpoVK ATPases of the A 99.4 7.3E-12 1.6E-16 136.2 18.6 182 224-443 5-194 (494)
128 TIGR02639 ClpA ATP-dependent C 99.4 5.6E-12 1.2E-16 143.0 18.1 154 204-410 455-663 (731)
129 PF00308 Bac_DnaA: Bacterial d 99.4 4.1E-12 9E-17 123.5 14.7 177 199-427 4-197 (219)
130 PRK12422 chromosomal replicati 99.4 6.1E-12 1.3E-16 134.4 17.2 183 196-427 104-302 (445)
131 KOG2028 ATPase related to the 99.4 4.3E-12 9.2E-17 127.4 13.9 149 198-407 133-292 (554)
132 PTZ00112 origin recognition co 99.4 1.8E-11 4E-16 135.4 20.0 192 203-461 755-987 (1164)
133 PRK06620 hypothetical protein; 99.4 1.3E-11 2.8E-16 119.6 16.7 162 197-425 10-176 (214)
134 cd00009 AAA The AAA+ (ATPases 99.4 1E-11 2.2E-16 110.3 14.0 115 237-395 19-151 (151)
135 PF07728 AAA_5: AAA domain (dy 99.4 1.1E-12 2.4E-17 117.9 7.2 105 239-387 1-139 (139)
136 PRK13407 bchI magnesium chelat 99.4 4.2E-11 9.1E-16 123.0 19.0 155 198-409 3-216 (334)
137 KOG1969 DNA replication checkp 99.4 2.1E-11 4.6E-16 131.7 17.2 202 188-426 258-498 (877)
138 PHA02244 ATPase-like protein 99.3 1.8E-11 3.9E-16 125.8 16.0 134 206-398 99-263 (383)
139 PRK10865 protein disaggregatio 99.3 4.4E-11 9.5E-16 137.4 20.6 161 202-410 567-780 (857)
140 PRK07471 DNA polymerase III su 99.3 1E-10 2.2E-15 122.0 20.9 152 197-409 13-213 (365)
141 TIGR02903 spore_lon_C ATP-depe 99.3 1.8E-11 3.9E-16 135.8 16.2 158 197-412 148-369 (615)
142 PRK14087 dnaA chromosomal repl 99.3 2.7E-11 5.9E-16 129.7 16.9 189 199-443 111-321 (450)
143 PRK09112 DNA polymerase III su 99.3 1.1E-10 2.4E-15 121.1 19.7 151 197-408 17-212 (351)
144 CHL00081 chlI Mg-protoporyphyr 99.3 2.8E-11 6E-16 124.7 15.1 154 199-409 13-232 (350)
145 COG2812 DnaX DNA polymerase II 99.3 2.1E-11 4.5E-16 130.5 14.4 170 197-427 10-209 (515)
146 COG0542 clpA ATP-binding subun 99.3 3.1E-11 6.7E-16 133.9 16.2 198 201-466 168-396 (786)
147 TIGR03346 chaperone_ClpB ATP-d 99.3 7.2E-11 1.6E-15 135.9 19.9 159 203-409 565-776 (852)
148 TIGR00678 holB DNA polymerase 99.3 5.3E-11 1.1E-15 112.8 15.5 123 237-408 14-167 (188)
149 PRK11388 DNA-binding transcrip 99.3 2.9E-11 6.2E-16 135.6 15.5 247 200-506 322-612 (638)
150 COG0714 MoxR-like ATPases [Gen 99.3 4.3E-11 9.4E-16 123.5 14.3 129 238-410 44-204 (329)
151 TIGR03345 VI_ClpV1 type VI sec 99.2 1.8E-10 3.8E-15 132.1 18.5 155 203-409 566-780 (852)
152 COG0542 clpA ATP-binding subun 99.2 1.2E-10 2.7E-15 129.1 16.5 159 203-409 491-705 (786)
153 PRK05201 hslU ATP-dependent pr 99.2 6.8E-11 1.5E-15 123.2 13.3 70 204-273 16-86 (443)
154 PRK09087 hypothetical protein; 99.2 2.3E-10 5E-15 111.8 16.3 166 196-427 14-184 (226)
155 PRK05564 DNA polymerase III su 99.2 1.3E-09 2.8E-14 111.7 22.6 148 201-409 2-165 (313)
156 TIGR00390 hslU ATP-dependent p 99.2 8.8E-11 1.9E-15 122.3 13.5 70 204-273 13-83 (441)
157 CHL00095 clpC Clp protease ATP 99.2 2.3E-10 4.9E-15 131.5 18.0 160 203-410 509-733 (821)
158 TIGR02030 BchI-ChlI magnesium 99.2 4.9E-10 1.1E-14 115.4 18.2 152 201-409 2-219 (337)
159 PRK07952 DNA replication prote 99.2 4.5E-11 9.8E-16 117.7 9.7 98 196-300 65-174 (244)
160 PF07724 AAA_2: AAA domain (Cd 99.2 5.2E-11 1.1E-15 111.3 8.6 107 238-375 4-131 (171)
161 PRK08116 hypothetical protein; 99.2 2E-10 4.2E-15 115.1 12.3 95 200-299 82-189 (268)
162 smart00763 AAA_PrkA PrkA AAA d 99.2 1.4E-09 3.1E-14 111.8 18.4 66 198-270 45-118 (361)
163 COG1474 CDC6 Cdc6-related prot 99.2 2.5E-09 5.4E-14 111.5 20.2 194 205-466 19-248 (366)
164 TIGR02329 propionate_PrpR prop 99.2 3.5E-10 7.5E-15 123.1 14.4 249 198-506 207-511 (526)
165 PRK11608 pspF phage shock prot 99.2 2.5E-09 5.5E-14 110.2 19.9 177 201-433 4-226 (326)
166 TIGR00602 rad24 checkpoint pro 99.1 8E-10 1.7E-14 122.0 16.5 208 188-460 71-328 (637)
167 PF07726 AAA_3: ATPase family 99.1 6.7E-11 1.4E-15 103.9 6.4 105 239-387 1-129 (131)
168 TIGR02974 phageshock_pspF psp 99.1 2.6E-09 5.6E-14 110.2 18.5 173 205-433 1-219 (329)
169 PRK13531 regulatory ATPase Rav 99.1 2.8E-09 6.2E-14 113.2 18.5 153 238-435 40-226 (498)
170 PRK05707 DNA polymerase III su 99.1 4.1E-09 8.9E-14 108.5 19.3 123 237-408 22-177 (328)
171 TIGR02442 Cob-chelat-sub cobal 99.1 1.6E-09 3.5E-14 121.0 17.4 152 201-409 2-214 (633)
172 PRK11331 5-methylcytosine-spec 99.1 9.4E-10 2E-14 116.0 14.6 27 237-263 194-220 (459)
173 TIGR01817 nifA Nif-specific re 99.1 3E-09 6.5E-14 116.9 19.1 179 199-433 192-414 (534)
174 PRK12377 putative replication 99.1 9.4E-10 2E-14 108.7 11.4 95 199-300 70-175 (248)
175 smart00382 AAA ATPases associa 99.1 7.4E-10 1.6E-14 97.2 9.6 64 238-301 3-91 (148)
176 PRK07399 DNA polymerase III su 99.0 1.2E-08 2.6E-13 104.5 18.8 147 201-409 2-195 (314)
177 PF00158 Sigma54_activat: Sigm 99.0 1.6E-09 3.5E-14 101.0 11.2 85 205-300 1-105 (168)
178 PRK15424 propionate catabolism 99.0 6E-09 1.3E-13 113.5 17.0 89 200-300 216-334 (538)
179 COG0470 HolB ATPase involved i 99.0 4.3E-09 9.3E-14 107.7 15.1 114 239-401 26-173 (325)
180 PRK15429 formate hydrogenlyase 99.0 5.9E-09 1.3E-13 117.9 17.6 238 200-502 373-658 (686)
181 PRK08939 primosomal protein Dn 99.0 1.2E-09 2.5E-14 111.5 10.7 96 199-299 123-228 (306)
182 PRK10820 DNA-binding transcrip 99.0 1.3E-08 2.8E-13 111.4 19.3 91 198-300 199-310 (520)
183 PRK08181 transposase; Validate 99.0 1.9E-09 4.1E-14 107.8 11.5 63 238-300 107-179 (269)
184 PRK08058 DNA polymerase III su 99.0 2.6E-09 5.6E-14 110.3 12.8 146 201-407 3-180 (329)
185 smart00350 MCM minichromosome 99.0 1E-08 2.2E-13 111.9 17.7 127 239-410 238-401 (509)
186 KOG0991 Replication factor C, 99.0 1.7E-09 3.8E-14 103.1 10.1 98 188-300 14-125 (333)
187 PRK04132 replication factor C 99.0 8.3E-09 1.8E-13 116.9 16.5 138 240-426 567-719 (846)
188 COG0593 DnaA ATPase involved i 99.0 1.2E-08 2.6E-13 106.6 15.7 192 196-443 80-288 (408)
189 TIGR02031 BchD-ChlD magnesium 99.0 9E-09 2E-13 113.9 15.6 128 238-409 17-174 (589)
190 PRK10923 glnG nitrogen regulat 98.9 1.4E-08 3E-13 109.8 15.4 248 201-506 136-450 (469)
191 COG3829 RocR Transcriptional r 98.9 1.4E-08 2.9E-13 107.9 14.6 250 196-507 238-542 (560)
192 PF03215 Rad17: Rad17 cell cyc 98.9 2.5E-08 5.5E-13 108.2 17.1 71 188-268 6-76 (519)
193 PRK05022 anaerobic nitric oxid 98.9 4.1E-08 8.9E-13 107.2 18.3 177 201-433 185-406 (509)
194 KOG0741 AAA+-type ATPase [Post 98.9 2.4E-08 5.2E-13 104.9 15.2 135 238-407 539-684 (744)
195 PF06068 TIP49: TIP49 C-termin 98.9 2.7E-08 5.9E-13 101.7 15.3 74 346-427 294-379 (398)
196 PRK11361 acetoacetate metaboli 98.9 3.3E-08 7.2E-13 106.4 16.5 247 202-506 142-438 (457)
197 COG1224 TIP49 DNA helicase TIP 98.9 1.9E-07 4.1E-12 94.3 20.4 60 365-427 321-392 (450)
198 PRK06964 DNA polymerase III su 98.9 3.6E-08 7.7E-13 101.8 15.4 59 343-408 145-203 (342)
199 PF14532 Sigma54_activ_2: Sigm 98.9 6.2E-09 1.3E-13 93.7 8.3 77 207-300 2-81 (138)
200 PF13177 DNA_pol3_delta2: DNA 98.9 7.6E-08 1.6E-12 89.2 15.6 110 237-395 19-160 (162)
201 COG1219 ClpX ATP-dependent pro 98.8 1.8E-08 3.9E-13 100.2 10.8 65 237-301 97-175 (408)
202 TIGR02915 PEP_resp_reg putativ 98.8 1.2E-07 2.6E-12 101.7 18.2 241 202-506 138-426 (445)
203 PRK15115 response regulator Gl 98.8 5.4E-08 1.2E-12 104.4 15.2 236 204-506 135-419 (444)
204 COG1221 PspF Transcriptional r 98.8 4.8E-08 1E-12 101.9 14.2 156 199-410 74-265 (403)
205 PF01078 Mg_chelatase: Magnesi 98.8 2.1E-08 4.6E-13 95.6 10.1 46 201-261 1-46 (206)
206 PRK06835 DNA replication prote 98.8 2E-08 4.3E-13 103.3 10.1 84 210-300 163-258 (329)
207 PRK07993 DNA polymerase III su 98.8 2E-07 4.3E-12 96.3 17.2 122 237-407 24-178 (334)
208 TIGR01818 ntrC nitrogen regula 98.8 1.2E-07 2.6E-12 102.3 16.3 246 203-506 134-447 (463)
209 PRK06526 transposase; Provisio 98.8 7.6E-09 1.6E-13 102.8 6.4 64 237-300 98-171 (254)
210 COG1484 DnaC DNA replication p 98.8 3.5E-08 7.5E-13 98.1 10.7 90 202-299 78-178 (254)
211 PRK06871 DNA polymerase III su 98.8 3E-07 6.5E-12 94.3 17.8 122 238-408 25-178 (325)
212 PF12775 AAA_7: P-loop contain 98.8 3.1E-08 6.7E-13 99.5 10.3 159 200-409 7-193 (272)
213 PRK06921 hypothetical protein; 98.8 5.1E-08 1.1E-12 97.6 11.5 63 237-299 117-188 (266)
214 PRK08769 DNA polymerase III su 98.8 2.2E-07 4.7E-12 95.2 16.3 122 237-407 26-183 (319)
215 PRK08699 DNA polymerase III su 98.8 9.2E-08 2E-12 98.4 13.5 123 236-407 20-183 (325)
216 PF01695 IstB_IS21: IstB-like 98.8 5.7E-09 1.2E-13 98.3 4.1 63 237-299 47-119 (178)
217 PF08740 BCS1_N: BCS1 N termin 98.8 3.9E-07 8.5E-12 86.3 16.7 134 50-205 28-187 (187)
218 KOG0745 Putative ATP-dependent 98.7 5.2E-08 1.1E-12 100.4 10.9 129 238-396 227-386 (564)
219 TIGR03015 pepcterm_ATPase puta 98.7 7.8E-07 1.7E-11 88.7 16.6 46 207-262 23-68 (269)
220 PRK10365 transcriptional regul 98.7 3.7E-07 8E-12 97.8 14.9 85 204-300 140-245 (441)
221 PRK06090 DNA polymerase III su 98.7 4.3E-07 9.4E-12 92.9 14.5 122 237-407 25-178 (319)
222 PF12774 AAA_6: Hydrolytic ATP 98.6 7.8E-07 1.7E-11 87.1 15.5 63 238-300 33-96 (231)
223 KOG1942 DNA helicase, TBP-inte 98.6 7.2E-07 1.6E-11 88.0 14.9 60 365-427 326-398 (456)
224 KOG0990 Replication factor C, 98.6 2.8E-07 6.1E-12 92.0 12.2 162 188-413 28-207 (360)
225 PRK09183 transposase/IS protei 98.6 7.4E-08 1.6E-12 96.1 7.7 63 238-300 103-176 (259)
226 KOG2035 Replication factor C, 98.6 5.4E-07 1.2E-11 88.3 13.2 172 194-427 4-217 (351)
227 COG1239 ChlI Mg-chelatase subu 98.6 7.7E-07 1.7E-11 92.3 13.6 156 199-411 13-234 (423)
228 PHA02624 large T antigen; Prov 98.6 3.2E-07 6.9E-12 99.5 10.7 126 233-396 427-562 (647)
229 COG1220 HslU ATP-dependent pro 98.6 4E-06 8.8E-11 84.3 17.6 69 205-273 17-86 (444)
230 TIGR00368 Mg chelatase-related 98.5 3.7E-07 7.9E-12 99.0 11.2 47 200-261 189-235 (499)
231 COG2204 AtoC Response regulato 98.5 3.1E-06 6.8E-11 90.0 17.3 89 201-300 139-247 (464)
232 PF00910 RNA_helicase: RNA hel 98.5 1.2E-07 2.6E-12 81.7 5.2 61 240-300 1-61 (107)
233 KOG1051 Chaperone HSP104 and r 98.5 2.5E-06 5.3E-11 96.6 17.0 92 204-300 563-672 (898)
234 PF13173 AAA_14: AAA domain 98.5 6.8E-07 1.5E-11 79.3 9.8 63 238-300 3-73 (128)
235 PF01637 Arch_ATPase: Archaeal 98.5 2E-06 4.3E-11 83.0 13.9 157 238-439 21-232 (234)
236 COG3604 FhlA Transcriptional r 98.5 1.8E-06 3.8E-11 91.0 13.6 250 199-507 219-528 (550)
237 PRK09862 putative ATP-dependen 98.5 5.2E-07 1.1E-11 97.5 10.0 119 238-400 211-392 (506)
238 PTZ00111 DNA replication licen 98.4 1.5E-06 3.3E-11 98.4 12.1 126 239-408 494-656 (915)
239 PF13401 AAA_22: AAA domain; P 98.4 7.7E-07 1.7E-11 78.5 7.7 63 238-300 5-99 (131)
240 KOG1970 Checkpoint RAD17-RFC c 98.4 5.7E-06 1.2E-10 88.0 15.1 73 188-268 69-141 (634)
241 TIGR00764 lon_rel lon-related 98.4 1.6E-05 3.5E-10 88.5 18.9 51 199-264 14-64 (608)
242 PF05729 NACHT: NACHT domain 98.4 2.9E-06 6.3E-11 77.5 10.7 63 238-300 1-93 (166)
243 PRK07132 DNA polymerase III su 98.3 3.9E-05 8.5E-10 78.0 19.1 121 237-407 18-160 (299)
244 PF05621 TniB: Bacterial TniB 98.3 2.3E-05 5.1E-10 78.8 15.9 88 207-301 38-158 (302)
245 KOG1514 Origin recognition com 98.2 4.8E-05 1E-09 83.2 18.0 171 239-468 424-633 (767)
246 PF00931 NB-ARC: NB-ARC domain 98.2 4.1E-05 8.9E-10 76.9 16.2 124 237-412 19-173 (287)
247 PHA02774 E1; Provisional 98.2 1.2E-05 2.7E-10 87.0 13.0 58 233-297 430-488 (613)
248 PLN03210 Resistant to P. syrin 98.2 5.6E-05 1.2E-09 90.5 19.7 58 195-263 176-233 (1153)
249 PRK05917 DNA polymerase III su 98.2 2.7E-05 5.9E-10 78.5 14.4 111 237-396 19-154 (290)
250 PRK05818 DNA polymerase III su 98.2 9.8E-05 2.1E-09 73.1 17.8 112 236-396 6-147 (261)
251 PF03969 AFG1_ATPase: AFG1-lik 98.2 4.2E-06 9E-11 87.3 8.0 97 233-374 58-168 (362)
252 KOG0478 DNA replication licens 98.2 3.7E-05 8.1E-10 83.6 14.7 158 204-407 430-624 (804)
253 PHA00729 NTP-binding motif con 98.2 3.7E-06 8E-11 81.6 6.5 59 239-299 19-93 (226)
254 PRK13406 bchD magnesium chelat 98.1 3.7E-05 8E-10 84.9 14.8 119 238-400 26-173 (584)
255 COG0606 Predicted ATPase with 98.1 4.5E-06 9.7E-11 87.9 7.0 48 199-261 175-222 (490)
256 KOG1968 Replication factor C, 98.1 1.8E-05 4E-10 90.3 11.8 195 195-443 312-530 (871)
257 COG5271 MDN1 AAA ATPase contai 98.0 4.9E-05 1.1E-09 88.8 13.5 124 238-410 1544-1704(4600)
258 PRK07276 DNA polymerase III su 98.0 0.00018 4E-09 72.7 16.0 118 237-406 24-172 (290)
259 TIGR02237 recomb_radB DNA repa 98.0 3.1E-05 6.6E-10 74.4 9.4 41 232-272 7-50 (209)
260 PF13207 AAA_17: AAA domain; P 98.0 5.4E-06 1.2E-10 72.2 3.6 30 240-269 2-31 (121)
261 cd01120 RecA-like_NTPases RecA 97.9 7.2E-05 1.6E-09 67.7 10.3 32 240-271 2-36 (165)
262 KOG2227 Pre-initiation complex 97.9 0.00051 1.1E-08 72.3 17.4 159 203-413 150-342 (529)
263 COG3283 TyrR Transcriptional r 97.9 0.00034 7.3E-09 71.3 15.6 99 191-300 192-305 (511)
264 PRK15455 PrkA family serine pr 97.9 2.3E-05 5E-10 85.0 6.7 67 197-270 70-137 (644)
265 KOG2170 ATPase of the AAA+ sup 97.9 0.00017 3.8E-09 71.9 12.2 89 204-300 83-190 (344)
266 PF05707 Zot: Zonular occluden 97.8 5.9E-05 1.3E-09 71.9 8.5 114 240-396 3-146 (193)
267 PRK00131 aroK shikimate kinase 97.8 1.5E-05 3.3E-10 73.7 4.4 34 236-269 3-36 (175)
268 PRK07261 topology modulation p 97.8 5.7E-05 1.2E-09 70.6 7.3 30 240-269 3-32 (171)
269 PRK14722 flhF flagellar biosyn 97.8 9.5E-05 2.1E-09 77.2 9.0 63 237-299 137-226 (374)
270 COG5245 DYN1 Dynein, heavy cha 97.8 0.00011 2.5E-09 85.2 10.1 138 235-409 1492-1658(3164)
271 KOG2680 DNA helicase TIP49, TB 97.7 0.00029 6.3E-09 70.1 11.5 60 365-427 318-389 (454)
272 PRK08118 topology modulation p 97.7 5.1E-05 1.1E-09 70.7 6.1 32 239-270 3-34 (167)
273 PRK09361 radB DNA repair and r 97.7 0.00012 2.6E-09 71.2 8.8 39 233-271 19-60 (225)
274 PF00493 MCM: MCM2/3/5 family 97.7 1.9E-05 4.2E-10 81.6 3.3 129 239-412 59-224 (331)
275 KOG0480 DNA replication licens 97.7 0.00021 4.6E-09 77.4 10.5 163 202-411 344-544 (764)
276 cd01394 radB RadB. The archaea 97.7 0.0003 6.5E-09 68.1 10.5 39 233-271 15-56 (218)
277 KOG1051 Chaperone HSP104 and r 97.6 0.00027 5.8E-09 80.5 10.7 148 202-405 185-359 (898)
278 TIGR01618 phage_P_loop phage n 97.6 4.5E-05 9.8E-10 74.0 4.0 63 237-301 12-94 (220)
279 PF06309 Torsin: Torsin; Inte 97.6 6.9E-05 1.5E-09 66.0 4.7 52 204-261 26-77 (127)
280 cd00464 SK Shikimate kinase (S 97.6 5.8E-05 1.2E-09 68.5 4.2 31 239-269 1-31 (154)
281 PRK06067 flagellar accessory p 97.6 0.00046 1E-08 67.6 10.8 38 233-270 21-61 (234)
282 PRK13947 shikimate kinase; Pro 97.6 5.8E-05 1.3E-09 70.0 4.1 32 239-270 3-34 (171)
283 PF10443 RNA12: RNA12 protein; 97.6 0.002 4.2E-08 67.9 15.6 93 365-459 185-298 (431)
284 PRK03839 putative kinase; Prov 97.6 5.9E-05 1.3E-09 70.8 3.9 30 240-269 3-32 (180)
285 cd01124 KaiC KaiC is a circadi 97.6 0.00043 9.4E-09 64.8 9.9 31 240-270 2-35 (187)
286 PF14516 AAA_35: AAA-like doma 97.6 0.0023 5.1E-08 66.2 16.1 35 239-273 33-70 (331)
287 PRK12723 flagellar biosynthesi 97.6 0.0011 2.3E-08 70.0 13.6 37 236-272 173-216 (388)
288 PRK05800 cobU adenosylcobinami 97.6 0.00045 9.8E-09 64.5 9.5 63 239-301 3-89 (170)
289 PF13671 AAA_33: AAA domain; P 97.6 3.7E-05 7.9E-10 68.9 2.1 24 240-263 2-25 (143)
290 PRK00625 shikimate kinase; Pro 97.6 7E-05 1.5E-09 70.2 4.0 31 239-269 2-32 (173)
291 PRK13949 shikimate kinase; Pro 97.5 7.2E-05 1.6E-09 69.8 3.8 31 239-269 3-33 (169)
292 cd01393 recA_like RecA is a b 97.5 0.0003 6.5E-09 68.3 8.2 40 233-272 15-63 (226)
293 TIGR01069 mutS2 MutS2 family p 97.5 0.00042 9.1E-09 79.2 10.5 23 238-260 323-345 (771)
294 cd01123 Rad51_DMC1_radA Rad51_ 97.5 0.00035 7.5E-09 68.3 8.6 40 233-272 15-63 (235)
295 TIGR03499 FlhF flagellar biosy 97.5 0.00052 1.1E-08 69.4 10.0 60 237-296 194-280 (282)
296 TIGR02012 tigrfam_recA protein 97.5 0.00052 1.1E-08 70.3 9.8 69 233-301 51-146 (321)
297 cd03281 ABC_MSH5_euk MutS5 hom 97.5 0.00049 1.1E-08 66.7 9.0 63 238-300 30-120 (213)
298 KOG3347 Predicted nucleotide k 97.5 9.8E-05 2.1E-09 66.4 3.7 38 238-277 8-45 (176)
299 PF05272 VirE: Virulence-assoc 97.5 0.00029 6.3E-09 67.5 7.1 60 233-300 48-107 (198)
300 COG0703 AroK Shikimate kinase 97.5 9.2E-05 2E-09 68.8 3.4 33 238-270 3-35 (172)
301 PF13604 AAA_30: AAA domain; P 97.5 0.00096 2.1E-08 63.8 10.5 35 238-272 19-56 (196)
302 PRK09376 rho transcription ter 97.4 0.0015 3.3E-08 68.2 12.3 23 240-262 172-194 (416)
303 cd00983 recA RecA is a bacter 97.4 0.00076 1.6E-08 69.3 9.8 69 233-301 51-146 (325)
304 PRK14531 adenylate kinase; Pro 97.4 0.00015 3.2E-09 68.5 4.2 30 238-267 3-32 (183)
305 TIGR01359 UMP_CMP_kin_fam UMP- 97.4 0.00013 2.9E-09 68.3 3.9 28 240-267 2-29 (183)
306 TIGR00150 HI0065_YjeE ATPase, 97.4 0.0011 2.3E-08 59.4 9.4 27 238-264 23-49 (133)
307 COG3284 AcoR Transcriptional a 97.4 0.00046 1E-08 75.2 8.4 64 237-300 336-419 (606)
308 PRK06217 hypothetical protein; 97.4 0.00014 3.1E-09 68.5 4.0 31 239-269 3-33 (183)
309 PF07693 KAP_NTPase: KAP famil 97.4 0.01 2.2E-07 60.7 18.1 30 235-264 18-47 (325)
310 PRK13948 shikimate kinase; Pro 97.4 0.00017 3.7E-09 68.2 4.4 34 236-269 9-42 (182)
311 cd02021 GntK Gluconate kinase 97.4 0.00014 3E-09 66.0 3.7 27 240-266 2-28 (150)
312 cd02020 CMPK Cytidine monophos 97.4 0.00016 3.4E-09 64.9 3.9 30 240-269 2-31 (147)
313 PRK14532 adenylate kinase; Pro 97.4 0.00015 3.2E-09 68.5 3.8 29 239-267 2-30 (188)
314 TIGR01313 therm_gnt_kin carboh 97.4 0.00015 3.2E-09 66.8 3.6 27 240-266 1-27 (163)
315 PF13191 AAA_16: AAA ATPase do 97.4 0.00011 2.3E-09 68.6 2.6 38 237-274 24-64 (185)
316 PRK08154 anaerobic benzoate ca 97.4 0.00034 7.3E-09 71.7 6.5 58 207-269 108-165 (309)
317 PRK08533 flagellar accessory p 97.3 0.0012 2.7E-08 64.7 10.1 37 233-269 20-59 (230)
318 PRK11823 DNA repair protein Ra 97.3 0.00066 1.4E-08 73.0 8.9 69 233-301 76-169 (446)
319 COG1373 Predicted ATPase (AAA+ 97.3 0.0015 3.3E-08 69.3 11.5 116 239-403 39-161 (398)
320 PRK13946 shikimate kinase; Pro 97.3 0.00017 3.7E-09 68.1 3.8 34 237-270 10-43 (184)
321 PRK05057 aroK shikimate kinase 97.3 0.0002 4.4E-09 67.0 4.1 33 238-270 5-37 (172)
322 cd01428 ADK Adenylate kinase ( 97.3 0.00019 4.2E-09 67.7 3.9 28 240-267 2-29 (194)
323 cd01121 Sms Sms (bacterial rad 97.3 0.00078 1.7E-08 70.7 8.6 69 233-301 78-171 (372)
324 PRK03731 aroL shikimate kinase 97.3 0.00027 5.7E-09 65.7 4.3 32 239-270 4-35 (171)
325 PRK04296 thymidine kinase; Pro 97.3 0.0024 5.1E-08 60.7 10.9 30 239-268 4-36 (190)
326 PRK06762 hypothetical protein; 97.3 0.00029 6.3E-09 65.1 4.5 32 238-269 3-34 (166)
327 KOG2228 Origin recognition com 97.3 0.0067 1.5E-07 61.7 14.2 130 238-411 50-221 (408)
328 PF00437 T2SE: Type II/IV secr 97.2 0.00069 1.5E-08 67.9 7.2 91 198-299 99-208 (270)
329 cd03283 ABC_MutS-like MutS-lik 97.2 0.0017 3.6E-08 62.3 9.0 62 238-299 26-116 (199)
330 PRK14530 adenylate kinase; Pro 97.2 0.00034 7.3E-09 67.7 4.3 30 239-268 5-34 (215)
331 PRK13765 ATP-dependent proteas 97.2 0.00069 1.5E-08 75.6 7.2 53 196-263 24-76 (637)
332 TIGR02688 conserved hypothetic 97.2 0.00069 1.5E-08 71.4 6.7 77 209-300 192-272 (449)
333 COG1241 MCM2 Predicted ATPase 97.2 0.00057 1.2E-08 76.1 6.5 62 239-300 321-395 (682)
334 cd00544 CobU Adenosylcobinamid 97.2 0.00099 2.1E-08 62.2 7.1 62 240-301 2-86 (169)
335 PF06431 Polyoma_lg_T_C: Polyo 97.2 0.0019 4.2E-08 66.2 9.6 137 213-395 139-285 (417)
336 PRK05973 replicative DNA helic 97.2 0.0023 4.9E-08 63.0 9.8 39 233-271 60-101 (237)
337 cd01128 rho_factor Transcripti 97.2 0.0038 8.3E-08 61.9 11.5 25 239-263 18-42 (249)
338 COG1102 Cmk Cytidylate kinase 97.2 0.00034 7.4E-09 63.9 3.6 28 240-267 3-30 (179)
339 PTZ00088 adenylate kinase 1; P 97.2 0.00037 8E-09 68.3 4.2 29 240-268 9-37 (229)
340 cd02019 NK Nucleoside/nucleoti 97.2 0.00063 1.4E-08 53.6 4.7 30 240-269 2-32 (69)
341 COG4650 RtcR Sigma54-dependent 97.2 0.001 2.2E-08 66.2 7.1 69 232-300 203-294 (531)
342 PRK06581 DNA polymerase III su 97.2 0.019 4.2E-07 56.2 15.8 124 239-411 17-163 (263)
343 TIGR01360 aden_kin_iso1 adenyl 97.1 0.00041 9E-09 65.1 4.2 28 239-266 5-32 (188)
344 PRK02496 adk adenylate kinase; 97.1 0.00037 8E-09 65.6 3.8 29 240-268 4-32 (184)
345 COG1618 Predicted nucleotide k 97.1 0.0063 1.4E-07 55.8 11.3 23 239-261 7-29 (179)
346 PRK14528 adenylate kinase; Pro 97.1 0.00042 9.1E-09 65.6 4.1 29 239-267 3-31 (186)
347 PRK00409 recombination and DNA 97.1 0.003 6.5E-08 72.5 11.6 62 238-299 328-418 (782)
348 PRK05703 flhF flagellar biosyn 97.1 0.0074 1.6E-07 64.6 13.9 36 237-272 221-261 (424)
349 cd00227 CPT Chloramphenicol (C 97.1 0.00037 7.9E-09 65.2 3.6 31 238-268 3-33 (175)
350 PF13245 AAA_19: Part of AAA d 97.1 0.00068 1.5E-08 54.6 4.5 32 240-271 13-51 (76)
351 COG1936 Predicted nucleotide k 97.1 0.00033 7.1E-09 64.7 2.9 29 240-269 3-31 (180)
352 PF13086 AAA_11: AAA domain; P 97.1 0.00049 1.1E-08 66.2 4.2 22 240-261 20-41 (236)
353 PRK06547 hypothetical protein; 97.1 0.0005 1.1E-08 64.4 4.1 33 237-269 15-47 (172)
354 PLN02199 shikimate kinase 97.1 0.0009 1.9E-08 67.5 6.1 46 212-269 89-134 (303)
355 PF08298 AAA_PrkA: PrkA AAA do 97.1 0.0012 2.6E-08 67.9 7.1 66 201-273 58-125 (358)
356 PF13479 AAA_24: AAA domain 97.0 0.00078 1.7E-08 65.2 5.2 58 239-301 5-81 (213)
357 TIGR02238 recomb_DMC1 meiotic 97.0 0.0017 3.7E-08 66.6 7.9 40 233-272 92-140 (313)
358 PRK11889 flhF flagellar biosyn 97.0 0.0088 1.9E-07 62.8 13.0 60 209-272 217-279 (436)
359 TIGR01351 adk adenylate kinase 97.0 0.00052 1.1E-08 66.2 3.8 28 240-267 2-29 (210)
360 PLN02200 adenylate kinase fami 97.0 0.00064 1.4E-08 66.9 4.4 34 238-273 44-77 (234)
361 PRK04841 transcriptional regul 97.0 0.024 5.3E-07 66.2 18.3 33 238-271 33-65 (903)
362 PRK00279 adk adenylate kinase; 97.0 0.00058 1.2E-08 66.1 4.0 28 240-267 3-30 (215)
363 PRK13695 putative NTPase; Prov 97.0 0.0072 1.6E-07 56.3 11.2 22 240-261 3-24 (174)
364 cd00267 ABC_ATPase ABC (ATP-bi 97.0 0.0018 4E-08 59.2 7.0 25 238-262 26-50 (157)
365 TIGR02858 spore_III_AA stage I 97.0 0.0027 5.8E-08 63.8 8.7 25 238-262 112-136 (270)
366 COG1855 ATPase (PilT family) [ 97.0 0.00074 1.6E-08 70.7 4.7 46 201-264 245-290 (604)
367 PRK12608 transcription termina 97.0 0.0052 1.1E-07 64.1 10.8 23 240-262 136-158 (380)
368 PF04665 Pox_A32: Poxvirus A32 97.0 0.017 3.7E-07 56.8 13.9 56 346-410 116-171 (241)
369 PRK04182 cytidylate kinase; Pr 97.0 0.00065 1.4E-08 63.2 3.8 28 240-267 3-30 (180)
370 PF01745 IPT: Isopentenyl tran 97.0 0.00074 1.6E-08 64.6 4.1 34 239-272 3-36 (233)
371 PRK14527 adenylate kinase; Pro 97.0 0.00064 1.4E-08 64.5 3.6 30 238-267 7-36 (191)
372 COG1485 Predicted ATPase [Gene 97.0 0.0016 3.5E-08 66.5 6.7 29 234-262 62-90 (367)
373 PRK09354 recA recombinase A; P 97.0 0.0035 7.6E-08 65.0 9.2 69 233-301 56-151 (349)
374 PRK13764 ATPase; Provisional 97.0 0.0025 5.3E-08 70.6 8.6 26 237-262 257-282 (602)
375 PF08433 KTI12: Chromatin asso 97.0 0.0014 3E-08 65.8 6.1 61 240-300 4-82 (270)
376 PRK06696 uridine kinase; Valid 97.0 0.0023 5E-08 62.3 7.5 41 237-277 22-65 (223)
377 PF13238 AAA_18: AAA domain; P 96.9 0.00059 1.3E-08 59.5 3.0 22 240-261 1-22 (129)
378 PLN03187 meiotic recombination 96.9 0.0029 6.2E-08 65.7 8.5 26 233-258 122-147 (344)
379 COG2874 FlaH Predicted ATPases 96.9 0.003 6.6E-08 60.4 7.8 27 233-259 24-50 (235)
380 PTZ00035 Rad51 protein; Provis 96.9 0.0036 7.8E-08 64.9 9.1 28 233-260 114-141 (337)
381 COG0467 RAD55 RecA-superfamily 96.9 0.002 4.4E-08 64.2 7.0 51 232-284 18-71 (260)
382 PRK01184 hypothetical protein; 96.9 0.00082 1.8E-08 63.2 3.8 29 239-268 3-31 (184)
383 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.9 0.0028 6E-08 57.4 7.1 63 238-301 27-101 (144)
384 PF13521 AAA_28: AAA domain; P 96.9 0.00072 1.6E-08 62.3 3.3 26 240-266 2-27 (163)
385 cd02027 APSK Adenosine 5'-phos 96.9 0.0012 2.5E-08 60.3 4.5 30 240-269 2-34 (149)
386 PF10236 DAP3: Mitochondrial r 96.9 0.06 1.3E-06 55.2 17.5 23 390-412 258-280 (309)
387 COG0563 Adk Adenylate kinase a 96.9 0.00094 2E-08 62.9 4.0 30 239-270 2-31 (178)
388 PF00406 ADK: Adenylate kinase 96.9 0.00064 1.4E-08 61.8 2.7 30 242-273 1-30 (151)
389 TIGR02173 cyt_kin_arch cytidyl 96.9 0.00094 2E-08 61.6 3.8 29 240-268 3-31 (171)
390 PRK10646 ADP-binding protein; 96.9 0.0076 1.6E-07 55.2 9.6 82 208-300 10-113 (153)
391 cd00046 DEXDc DEAD-like helica 96.9 0.0023 5.1E-08 55.5 6.1 23 239-261 2-24 (144)
392 PRK00771 signal recognition pa 96.9 0.011 2.5E-07 63.2 12.4 63 210-273 69-134 (437)
393 cd03287 ABC_MSH3_euk MutS3 hom 96.8 0.0043 9.3E-08 60.5 8.4 62 238-299 32-121 (222)
394 TIGR00767 rho transcription te 96.8 0.0051 1.1E-07 64.7 9.4 24 239-262 170-193 (415)
395 PRK04040 adenylate kinase; Pro 96.8 0.0011 2.3E-08 63.0 3.9 28 238-265 3-32 (188)
396 PRK14526 adenylate kinase; Pro 96.8 0.0012 2.6E-08 63.9 4.1 28 240-267 3-30 (211)
397 TIGR03574 selen_PSTK L-seryl-t 96.8 0.0014 3E-08 65.0 4.5 31 240-270 2-35 (249)
398 PF06745 KaiC: KaiC; InterPro 96.8 0.0019 4.2E-08 62.8 5.5 41 232-272 14-58 (226)
399 smart00487 DEXDc DEAD-like hel 96.8 0.0077 1.7E-07 55.6 9.3 24 238-261 25-49 (201)
400 PHA02530 pseT polynucleotide k 96.8 0.0011 2.5E-08 67.2 3.9 29 238-266 3-32 (300)
401 cd03280 ABC_MutS2 MutS2 homolo 96.8 0.0055 1.2E-07 58.6 8.3 21 238-258 29-49 (200)
402 COG3267 ExeA Type II secretory 96.8 0.087 1.9E-06 51.9 16.5 154 240-443 54-247 (269)
403 PF02367 UPF0079: Uncharacteri 96.8 0.0023 4.9E-08 56.5 5.1 63 238-300 16-100 (123)
404 TIGR03878 thermo_KaiC_2 KaiC d 96.7 0.0018 3.8E-08 64.8 4.9 39 233-271 32-73 (259)
405 PF00519 PPV_E1_C: Papillomavi 96.7 0.0024 5.3E-08 66.2 5.8 61 233-299 258-318 (432)
406 PRK08233 hypothetical protein; 96.7 0.0016 3.5E-08 60.7 4.1 31 239-269 5-36 (182)
407 PRK12339 2-phosphoglycerate ki 96.7 0.0017 3.7E-08 62.1 4.3 28 238-265 4-31 (197)
408 PRK10078 ribose 1,5-bisphospho 96.7 0.0012 2.7E-08 62.3 3.3 29 239-267 4-32 (186)
409 PF01583 APS_kinase: Adenylyls 96.7 0.0017 3.7E-08 59.7 4.0 35 239-273 4-41 (156)
410 cd03282 ABC_MSH4_euk MutS4 hom 96.7 0.0053 1.2E-07 59.1 7.6 62 238-299 30-119 (204)
411 cd03216 ABC_Carb_Monos_I This 96.7 0.0062 1.3E-07 56.3 7.7 24 238-261 27-50 (163)
412 TIGR03877 thermo_KaiC_1 KaiC d 96.6 0.0027 5.8E-08 62.5 5.4 49 233-283 17-68 (237)
413 TIGR02239 recomb_RAD51 DNA rep 96.6 0.0055 1.2E-07 63.0 7.9 27 233-259 92-118 (316)
414 cd01129 PulE-GspE PulE/GspE Th 96.6 0.015 3.2E-07 58.3 10.7 87 199-299 56-160 (264)
415 PLN03186 DNA repair protein RA 96.6 0.0061 1.3E-07 63.2 8.1 27 233-259 119-145 (342)
416 COG3854 SpoIIIAA ncharacterize 96.6 0.0057 1.2E-07 59.2 7.0 24 239-262 139-162 (308)
417 smart00534 MUTSac ATPase domai 96.6 0.011 2.4E-07 55.8 9.1 61 240-300 2-90 (185)
418 cd03222 ABC_RNaseL_inhibitor T 96.6 0.0098 2.1E-07 55.9 8.6 63 239-301 27-102 (177)
419 TIGR02236 recomb_radA DNA repa 96.6 0.0044 9.5E-08 63.4 6.8 51 233-283 91-150 (310)
420 PRK05541 adenylylsulfate kinas 96.6 0.0027 6E-08 59.2 4.8 25 238-262 8-32 (176)
421 TIGR02782 TrbB_P P-type conjug 96.6 0.0032 6.9E-08 64.2 5.6 26 237-262 132-157 (299)
422 TIGR01613 primase_Cterm phage/ 96.6 0.0069 1.5E-07 61.9 8.1 63 234-299 73-139 (304)
423 cd03243 ABC_MutS_homologs The 96.6 0.0085 1.9E-07 57.3 8.2 63 238-300 30-120 (202)
424 PRK04328 hypothetical protein; 96.5 0.0061 1.3E-07 60.5 7.1 50 233-284 19-71 (249)
425 COG0529 CysC Adenylylsulfate k 96.5 0.0037 8.1E-08 58.1 5.0 36 238-273 24-62 (197)
426 PF08423 Rad51: Rad51; InterP 96.5 0.0076 1.7E-07 60.1 7.7 40 233-272 34-82 (256)
427 PLN02674 adenylate kinase 96.5 0.0025 5.4E-08 62.9 4.2 29 238-266 32-60 (244)
428 cd02022 DPCK Dephospho-coenzym 96.5 0.0024 5.2E-08 60.0 3.9 29 240-269 2-30 (179)
429 PRK14529 adenylate kinase; Pro 96.5 0.0021 4.6E-08 62.6 3.6 27 240-266 3-29 (223)
430 PF09848 DUF2075: Uncharacteri 96.5 0.0051 1.1E-07 64.2 6.7 24 238-261 2-25 (352)
431 PRK00889 adenylylsulfate kinas 96.5 0.0033 7.1E-08 58.6 4.8 33 238-270 5-40 (175)
432 PRK14021 bifunctional shikimat 96.5 0.0027 5.8E-08 70.1 4.7 32 239-270 8-39 (542)
433 TIGR02655 circ_KaiC circadian 96.5 0.0055 1.2E-07 66.8 7.1 51 233-285 17-71 (484)
434 PRK12338 hypothetical protein; 96.5 0.0023 5E-08 65.4 3.8 28 238-265 5-32 (319)
435 cd00561 CobA_CobO_BtuR ATP:cor 96.5 0.041 9E-07 50.7 11.6 29 240-268 5-36 (159)
436 PHA00350 putative assembly pro 96.5 0.0057 1.2E-07 64.4 6.6 61 240-302 4-95 (399)
437 PRK12727 flagellar biosynthesi 96.4 0.016 3.4E-07 63.1 10.0 64 236-299 349-439 (559)
438 PRK10416 signal recognition pa 96.4 0.0066 1.4E-07 62.4 6.9 61 211-272 88-152 (318)
439 PTZ00202 tuzin; Provisional 96.4 0.01 2.2E-07 62.9 8.2 77 198-286 257-333 (550)
440 PF03266 NTPase_1: NTPase; In 96.4 0.0026 5.6E-08 59.3 3.5 22 240-261 2-23 (168)
441 PRK04301 radA DNA repair and r 96.4 0.0062 1.3E-07 62.7 6.6 40 233-272 98-146 (317)
442 TIGR00416 sms DNA repair prote 96.4 0.0066 1.4E-07 65.5 7.0 69 233-301 90-183 (454)
443 cd00984 DnaB_C DnaB helicase C 96.4 0.0042 9E-08 60.9 5.0 40 233-272 9-52 (242)
444 PLN02459 probable adenylate ki 96.4 0.0035 7.5E-08 62.4 4.4 29 239-267 31-59 (261)
445 PF03029 ATP_bind_1: Conserved 96.4 0.0026 5.7E-08 62.7 3.5 32 242-273 1-35 (238)
446 cd03246 ABCC_Protease_Secretio 96.4 0.016 3.5E-07 53.9 8.7 23 239-261 30-52 (173)
447 TIGR02322 phosphon_PhnN phosph 96.4 0.0026 5.7E-08 59.4 3.4 25 239-263 3-27 (179)
448 KOG3354 Gluconate kinase [Carb 96.4 0.0029 6.3E-08 57.4 3.3 46 235-282 10-55 (191)
449 PRK09825 idnK D-gluconate kina 96.4 0.0053 1.2E-07 57.6 5.3 26 239-264 5-30 (176)
450 cd03227 ABC_Class2 ABC-type Cl 96.4 0.02 4.4E-07 52.8 9.2 63 238-300 22-111 (162)
451 PRK12724 flagellar biosynthesi 96.4 0.053 1.1E-06 57.6 13.2 37 237-273 223-263 (432)
452 cd03115 SRP The signal recogni 96.4 0.0045 9.7E-08 57.5 4.7 34 240-273 3-39 (173)
453 TIGR03880 KaiC_arch_3 KaiC dom 96.4 0.0085 1.8E-07 58.2 6.9 40 233-272 12-54 (224)
454 PLN02165 adenylate isopentenyl 96.4 0.0031 6.7E-08 64.8 3.9 31 239-269 45-75 (334)
455 cd02028 UMPK_like Uridine mono 96.3 0.0042 9.2E-08 58.4 4.5 34 240-273 2-38 (179)
456 TIGR00064 ftsY signal recognit 96.3 0.01 2.2E-07 59.8 7.4 62 211-273 46-111 (272)
457 cd03286 ABC_MSH6_euk MutS6 hom 96.3 0.019 4.2E-07 55.8 9.1 62 238-299 31-120 (218)
458 KOG2543 Origin recognition com 96.3 0.04 8.6E-07 57.1 11.6 38 236-273 29-66 (438)
459 PRK05480 uridine/cytidine kina 96.3 0.0049 1.1E-07 59.2 4.8 34 238-271 7-41 (209)
460 TIGR03881 KaiC_arch_4 KaiC dom 96.3 0.0053 1.2E-07 59.8 5.1 38 233-270 16-56 (229)
461 PRK13808 adenylate kinase; Pro 96.3 0.0035 7.7E-08 64.5 3.9 28 240-267 3-30 (333)
462 PF06414 Zeta_toxin: Zeta toxi 96.3 0.0037 7.9E-08 59.8 3.8 38 236-273 14-52 (199)
463 PRK13894 conjugal transfer ATP 96.3 0.018 4E-07 59.2 9.1 25 237-261 148-172 (319)
464 PRK14730 coaE dephospho-CoA ki 96.3 0.0039 8.5E-08 59.5 3.9 31 239-269 3-33 (195)
465 PF12780 AAA_8: P-loop contain 96.3 0.01 2.2E-07 59.5 7.0 83 205-298 10-99 (268)
466 PRK06761 hypothetical protein; 96.3 0.0046 1E-07 62.3 4.5 32 239-270 5-36 (282)
467 cd02023 UMPK Uridine monophosp 96.3 0.0057 1.2E-07 58.2 4.9 33 240-272 2-35 (198)
468 PRK09519 recA DNA recombinatio 96.2 0.018 3.8E-07 65.6 9.4 69 233-301 56-151 (790)
469 PRK13833 conjugal transfer pro 96.2 0.0068 1.5E-07 62.4 5.6 25 237-261 144-168 (323)
470 PRK04220 2-phosphoglycerate ki 96.2 0.0081 1.8E-07 61.0 6.0 28 237-264 92-119 (301)
471 PRK11545 gntK gluconate kinase 96.2 0.0037 8E-08 57.9 3.2 26 243-268 1-26 (163)
472 PRK12337 2-phosphoglycerate ki 96.2 0.0097 2.1E-07 63.6 6.8 28 237-264 255-282 (475)
473 PRK12726 flagellar biosynthesi 96.2 0.014 3E-07 61.1 7.7 37 237-273 206-245 (407)
474 PF00488 MutS_V: MutS domain V 96.2 0.017 3.7E-07 56.8 8.1 62 238-299 44-133 (235)
475 TIGR03263 guanyl_kin guanylate 96.2 0.0032 7E-08 58.8 2.7 25 239-263 3-27 (180)
476 TIGR01425 SRP54_euk signal rec 96.2 0.011 2.4E-07 62.9 6.9 63 210-273 73-139 (429)
477 PF13555 AAA_29: P-loop contai 96.1 0.0063 1.4E-07 46.9 3.6 22 240-261 26-47 (62)
478 PRK11174 cysteine/glutathione 96.1 0.012 2.7E-07 65.5 7.6 27 235-261 374-400 (588)
479 TIGR00376 DNA helicase, putati 96.1 0.0088 1.9E-07 67.3 6.4 34 239-272 175-211 (637)
480 PRK00300 gmk guanylate kinase; 96.1 0.0054 1.2E-07 58.5 4.0 26 237-262 5-30 (205)
481 PRK13975 thymidylate kinase; P 96.1 0.007 1.5E-07 57.3 4.8 26 239-264 4-29 (196)
482 PRK00081 coaE dephospho-CoA ki 96.1 0.0055 1.2E-07 58.4 4.0 30 239-269 4-33 (194)
483 cd03284 ABC_MutS1 MutS1 homolo 96.1 0.012 2.5E-07 57.2 6.3 62 238-299 31-120 (216)
484 KOG2383 Predicted ATPase [Gene 96.1 0.018 3.9E-07 59.8 7.9 23 236-258 113-135 (467)
485 PRK08356 hypothetical protein; 96.1 0.0056 1.2E-07 58.3 4.0 31 239-272 7-37 (195)
486 cd02024 NRK1 Nicotinamide ribo 96.1 0.0051 1.1E-07 58.4 3.6 28 240-267 2-30 (187)
487 PRK14737 gmk guanylate kinase; 96.1 0.0047 1E-07 58.6 3.4 25 237-261 4-28 (186)
488 PF00485 PRK: Phosphoribulokin 96.1 0.0042 9.2E-08 59.0 3.1 23 240-262 2-24 (194)
489 PRK06851 hypothetical protein; 96.1 0.0077 1.7E-07 62.9 5.2 39 235-273 212-253 (367)
490 PRK10867 signal recognition pa 96.1 0.013 2.7E-07 62.8 6.9 62 211-273 74-140 (433)
491 COG4088 Predicted nucleotide k 96.1 0.0033 7.1E-08 59.8 2.1 25 240-264 4-28 (261)
492 TIGR00017 cmk cytidylate kinas 96.1 0.0061 1.3E-07 59.3 4.1 30 239-268 4-33 (217)
493 TIGR02655 circ_KaiC circadian 96.1 0.012 2.7E-07 64.1 6.9 37 233-269 259-298 (484)
494 cd04159 Arl10_like Arl10-like 96.1 0.0091 2E-07 53.2 5.0 21 240-260 2-22 (159)
495 COG4133 CcmA ABC-type transpor 96.1 0.026 5.6E-07 53.2 8.0 23 239-261 30-52 (209)
496 COG2804 PulE Type II secretory 96.1 0.012 2.5E-07 63.2 6.5 84 199-299 234-338 (500)
497 PRK11176 lipid transporter ATP 96.1 0.017 3.8E-07 64.2 8.3 26 237-262 369-394 (582)
498 PRK00091 miaA tRNA delta(2)-is 96.1 0.0057 1.2E-07 62.6 4.0 33 238-270 5-37 (307)
499 TIGR02533 type_II_gspE general 96.0 0.011 2.5E-07 64.2 6.4 86 199-299 218-322 (486)
500 PF00448 SRP54: SRP54-type pro 96.0 0.0054 1.2E-07 58.7 3.5 37 237-273 1-40 (196)
No 1
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-100 Score=780.14 Aligned_cols=442 Identities=50% Similarity=0.832 Sum_probs=410.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhhhcCCceEEEEecCCCcCchHHHHHHHHHhccccCCCCc
Q 010133 2 REYWTSLASLLGVLAFCQSLLQVIFPPELRFASLKLFNRIFNIFSSYCYFDITEIDGVNTNELYNAVQLYLSSSVSISGS 81 (517)
Q Consensus 2 ~~~~~~~~s~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~s~y~~i~i~E~~~~~~~~~y~~~~~~l~~~~~~~~~ 81 (517)
+++|+.+||++|++||+|+|+++++|..++.|+..++++|+.++++|.++.+.|.+++.+|++|.+++.||+++.++.++
T Consensus 1 ~~~~~~~~s~~~~~~~~~~~~~~~~p~~~~~y~~~~~~~l~g~~s~~~~~~~~e~~g~~~n~~~~aie~yl~~k~~~~~~ 80 (457)
T KOG0743|consen 1 SSVFTAYASLLGSLMFIKSMLQDIIPPSINPYFISALRGLFGVFSSYALIRIGEQDGVFRNQLYVAIEVYLSSKSSAIAK 80 (457)
T ss_pred CCccchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhccCcccEEEEeehhccchHHHHHHHHHHhhhccchhhhh
Confidence 46899999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred eeEEEecCCCCceEEeccCCCccccccCCceeEEEEEecCCCCcccccCCCCcCcceEEEEEecccchhHHhhhHHHHHH
Q 010133 82 RLSLTRALNSSAITFGLSNNDSIYDSFNGVGVLWEHVVSPRQTQTFSWRPLPEEKRGFTLRIKKKDKSLILDSYLDFIME 161 (517)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~~~~~~~d~f~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~~~~~~~~~~l~~~~~ 161 (517)
|++.++..+++++++.+++++++.|.|+|+++||.+.+...+...+. +...++|+|+|+|++++|++|+.+||+++..
T Consensus 81 rl~~~~~~~s~~~~l~~~~~~~i~d~f~gv~~~w~~~~~~~~~~~~~--~~~~~~r~~~L~f~k~~~e~V~~syl~~v~~ 158 (457)
T KOG0743|consen 81 RLTQNLSKNSKSLVLGLDDNEEISDEFEGVPVKWRHFVDYNEKWIFV--EREREKRYFELTFHKKPRELVTLSYLPYVVS 158 (457)
T ss_pred hhhhhhccccccceEEecCCcEEEEEEeceEEEEEEEEEecCccccc--ccCCcceEEEEEecCccHHHhHHhHHHHHHH
Confidence 99999999999999999999999999999999999998776654432 4557889999999999999999999999999
Q ss_pred HHHHHHHHccccceeccCCCCCCCC-CCCCceecccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcce
Q 010133 162 KANDIRRKNQDRLLYTNSRGGSLDS-RGHPWESVSFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGY 240 (517)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~ 240 (517)
++++|..+++++++|++.++..|.. .+..|.++.+.||+||+||+|+++.|++|++|+.+|+++++||+++|+||+|||
T Consensus 159 ~~k~I~~~~r~~kl~t~~~~~~~~~~~~~~W~~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGY 238 (457)
T KOG0743|consen 159 KAKEILEENRELKLYTNSGKTVIYTAKGGEWRSVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGY 238 (457)
T ss_pred HHHHHHHHHHHHHHhhcCCCcccccccCCcceecCCCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccc
Confidence 9999999999999999998877874 578999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccChHHHHHHHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCC
Q 010133 241 LLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNNSELRKLLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCG 320 (517)
Q Consensus 241 LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~~~~L~~lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~ 320 (517)
|||||||||||||++||||+|+++||+++++++..+++|++|+..++++||||||||||.+++++++..+.+..
T Consensus 239 LLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~------ 312 (457)
T KOG0743|consen 239 LLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLRHLLLATPNKSILLIEDIDCSFDLRERRKKKKENF------ 312 (457)
T ss_pred eeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHHHHHHhCCCCcEEEEeecccccccccccccccccc------
Confidence 99999999999999999999999999999999999999999999999999999999999998887775322110
Q ss_pred CCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHH
Q 010133 321 NGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPA 400 (517)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~ 400 (517)
....+++|||||||++||+||+||++|||||||||+|+|||||+||||||+||+|++|++++
T Consensus 313 ------------------~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~ 374 (457)
T KOG0743|consen 313 ------------------EGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEA 374 (457)
T ss_pred ------------------cCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHH
Confidence 01346799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCChHhHHHHHHhhCCCCCCHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhhhcCC
Q 010133 401 LLILLKNYLGYEESDLEDETLKELEDVVGKAEMTPADISEVLIKNKRDKCKAVRELLETLKVKAEKNVKHGG 472 (517)
Q Consensus 401 ~~~l~~~~l~~~~~~~~~~~~~~i~~l~~~~~~spadi~~~l~~~~~~~~~al~~l~~~l~~~~~~~~~~~~ 472 (517)
++.|+++||+... +|.++++|++++....+|||||++.||.++.+++.|+++|++.|+..+.+..+...
T Consensus 375 fK~La~nYL~~~~---~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l~~~~~~~~~~~~ 443 (457)
T KOG0743|consen 375 FKTLASNYLGIEE---DHRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKGLVEALESKKEKRNKDDK 443 (457)
T ss_pred HHHHHHHhcCCCC---CcchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHHHHHHHHhhhhhhccchh
Confidence 9999999998865 48999999999989999999999999999889999999999999998876665443
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-42 Score=342.50 Aligned_cols=238 Identities=25% Similarity=0.298 Sum_probs=196.1
Q ss_pred ccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccc-
Q 010133 195 SFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEV- 273 (517)
Q Consensus 195 ~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~- 273 (517)
...+..||++|+|.++++++|.+.++..+++++.|.++|+.+|+|+|||||||||||.||+|+|++.+..|+.+..+++
T Consensus 143 ~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElV 222 (406)
T COG1222 143 EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELV 222 (406)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHH
Confidence 3455679999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred -----cChHHHHHHHHhc--cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhH
Q 010133 274 -----HNNSELRKLLMKT--SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSIT 346 (517)
Q Consensus 274 -----~~~~~L~~lf~~~--~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (517)
....-++.+|.-+ ..||||||||||++. ++|. ..+.+++..-++|
T Consensus 223 qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg---~kR~-------------------------d~~t~gDrEVQRT 274 (406)
T COG1222 223 QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIG---AKRF-------------------------DSGTSGDREVQRT 274 (406)
T ss_pred HHHhccchHHHHHHHHHHhhcCCeEEEEechhhhh---cccc-------------------------cCCCCchHHHHHH
Confidence 3456689999776 489999999999983 2332 0112235567899
Q ss_pred HHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHH
Q 010133 347 LSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELED 426 (517)
Q Consensus 347 ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~ 426 (517)
+-+|||+|||+.+. +++=|||+||+++.|||||+||||||++|+||+|+.+.|..||+.+....... ++..++.|+.
T Consensus 275 mleLL~qlDGFD~~--~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~-~dvd~e~la~ 351 (406)
T COG1222 275 MLELLNQLDGFDPR--GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA-DDVDLELLAR 351 (406)
T ss_pred HHHHHHhccCCCCC--CCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc-cCcCHHHHHH
Confidence 99999999999764 67899999999999999999999999999999999999999999987655432 1456888888
Q ss_pred hhCCCCCCHHHHHHHHHHh------cccHHHHHHHHHHHHHHHHH
Q 010133 427 VVGKAEMTPADISEVLIKN------KRDKCKAVRELLETLKVKAE 465 (517)
Q Consensus 427 l~~~~~~spadi~~~l~~~------~~~~~~al~~l~~~l~~~~~ 465 (517)
. +.++|+|||..+|.-. .+......+++.++.++...
T Consensus 352 ~--~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 352 L--TEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred h--cCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHHh
Confidence 7 7999999999998721 11223344555555555443
No 3
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-39 Score=331.13 Aligned_cols=210 Identities=27% Similarity=0.351 Sum_probs=180.5
Q ss_pred CCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccc-----
Q 010133 199 PSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEV----- 273 (517)
Q Consensus 199 p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~----- 273 (517)
..+|++|-|-++.|+++ +.+.+|++.|..|.++|-..|+|+||.||||||||.||+|+|++.+.|||....+++
T Consensus 300 nv~F~dVkG~DEAK~EL-eEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~V 378 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQEL-EEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFV 378 (752)
T ss_pred ccccccccChHHHHHHH-HHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhh
Confidence 45799999999999998 669999999999999999999999999999999999999999999999999998887
Q ss_pred -cChHHHHHHHHhcc--CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHH
Q 010133 274 -HNNSELRKLLMKTS--SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGL 350 (517)
Q Consensus 274 -~~~~~L~~lf~~~~--~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 350 (517)
.....+|.||..+. .||||||||||++- ++|. .....-.+.|+++|
T Consensus 379 GvGArRVRdLF~aAk~~APcIIFIDEiDavG---~kR~----------------------------~~~~~y~kqTlNQL 427 (752)
T KOG0734|consen 379 GVGARRVRDLFAAAKARAPCIIFIDEIDAVG---GKRN----------------------------PSDQHYAKQTLNQL 427 (752)
T ss_pred cccHHHHHHHHHHHHhcCCeEEEEechhhhc---ccCC----------------------------ccHHHHHHHHHHHH
Confidence 25788999998774 89999999999972 2221 00112468899999
Q ss_pred HHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhhCC
Q 010133 351 LNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDVVGK 430 (517)
Q Consensus 351 Ln~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~~~ 430 (517)
|.+|||+..++ ++|||++||.||.||+||+||||||++|.+|.|+...|.+|++.|+.....+- +.+...|++- +
T Consensus 428 LvEmDGF~qNe--GiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~-~VD~~iiARG--T 502 (752)
T KOG0734|consen 428 LVEMDGFKQNE--GIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDE-DVDPKIIARG--T 502 (752)
T ss_pred HHHhcCcCcCC--ceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCccc-CCCHhHhccC--C
Confidence 99999997764 59999999999999999999999999999999999999999999997654211 2345556654 8
Q ss_pred CCCCHHHHHHHHHHh
Q 010133 431 AEMTPADISEVLIKN 445 (517)
Q Consensus 431 ~~~spadi~~~l~~~ 445 (517)
.|||+||++++++..
T Consensus 503 ~GFsGAdLaNlVNqA 517 (752)
T KOG0734|consen 503 PGFSGADLANLVNQA 517 (752)
T ss_pred CCCchHHHHHHHHHH
Confidence 999999999998854
No 4
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-38 Score=332.71 Aligned_cols=213 Identities=27% Similarity=0.366 Sum_probs=186.9
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccc--
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEV-- 273 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~-- 273 (517)
.-+..+|++++|.+++|.++-+.+...++.++.|.+.|+.+++|+|||||||||||++|+|+|++.+.+|+.+.+.++
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~s 506 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFS 506 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHH
Confidence 446679999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred ----cChHHHHHHHHhcc--CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHH
Q 010133 274 ----HNNSELRKLLMKTS--SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITL 347 (517)
Q Consensus 274 ----~~~~~L~~lf~~~~--~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 347 (517)
.++..++.+|.++. .||||||||||++.. .|. +...+...+.|
T Consensus 507 k~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~---~R~----------------------------g~~~~v~~RVl 555 (693)
T KOG0730|consen 507 KYVGESERAIREVFRKARQVAPCIIFFDEIDALAG---SRG----------------------------GSSSGVTDRVL 555 (693)
T ss_pred HhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhh---ccC----------------------------CCccchHHHHH
Confidence 36778999999885 789999999999842 221 11125678999
Q ss_pred HHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHh
Q 010133 348 SGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDV 427 (517)
Q Consensus 348 s~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l 427 (517)
++||++|||+.. .++++||++||+|+.||+||+||||||..|++++|+.+.|..|++.++....... ...+++|++.
T Consensus 556 sqLLtEmDG~e~--~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~-~vdl~~La~~ 632 (693)
T KOG0730|consen 556 SQLLTEMDGLEA--LKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSE-DVDLEELAQA 632 (693)
T ss_pred HHHHHHcccccc--cCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCc-cccHHHHHHH
Confidence 999999999954 3579999999999999999999999999999999999999999999987665432 2467778776
Q ss_pred hCCCCCCHHHHHHHHHH
Q 010133 428 VGKAEMTPADISEVLIK 444 (517)
Q Consensus 428 ~~~~~~spadi~~~l~~ 444 (517)
|.+||+|||.++|..
T Consensus 633 --T~g~SGAel~~lCq~ 647 (693)
T KOG0730|consen 633 --TEGYSGAEIVAVCQE 647 (693)
T ss_pred --hccCChHHHHHHHHH
Confidence 899999999999974
No 5
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-36 Score=330.27 Aligned_cols=215 Identities=31% Similarity=0.423 Sum_probs=186.2
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccc---
Q 010133 197 KHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEV--- 273 (517)
Q Consensus 197 ~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~--- 273 (517)
..+.+|.+|+|-++.|++|.+ +..|+++|+.|.++|...|||+||+||||||||.||+|+|++.|+||+.++.+++
T Consensus 305 ~t~V~FkDVAG~deAK~El~E-~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELME-FVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred CCCCccccccCcHHHHHHHHH-HHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 445789999999999999866 8899999999999999999999999999999999999999999999999999987
Q ss_pred ---cChHHHHHHHHhcc--CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHH
Q 010133 274 ---HNNSELRKLLMKTS--SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLS 348 (517)
Q Consensus 274 ---~~~~~L~~lf~~~~--~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 348 (517)
...+.++.+|..+. .||||||||||++. .+| +.....+.+.....+|+
T Consensus 384 ~~g~~asrvr~lf~~ar~~aP~iifideida~~---~~r------------------------~G~~~~~~~~e~e~tln 436 (774)
T KOG0731|consen 384 FVGVGASRVRDLFPLARKNAPSIIFIDEIDAVG---RKR------------------------GGKGTGGGQDEREQTLN 436 (774)
T ss_pred hcccchHHHHHHHHHhhccCCeEEEeccccccc---ccc------------------------cccccCCCChHHHHHHH
Confidence 24788999998875 79999999999973 111 00012234566788999
Q ss_pred HHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhh
Q 010133 349 GLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDVV 428 (517)
Q Consensus 349 ~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~ 428 (517)
+||.+|||+.++ .++|++++||+++.||+||+||||||++|.++.|+...|..|++.++.......+...+..++.+
T Consensus 437 Qll~emDgf~~~--~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~- 513 (774)
T KOG0731|consen 437 QLLVEMDGFETS--KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASL- 513 (774)
T ss_pred HHHHHhcCCcCC--CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhc-
Confidence 999999999775 56999999999999999999999999999999999999999999998776654445555567666
Q ss_pred CCCCCCHHHHHHHHH
Q 010133 429 GKAEMTPADISEVLI 443 (517)
Q Consensus 429 ~~~~~spadi~~~l~ 443 (517)
+.+||+|||+++|+
T Consensus 514 -t~gf~gadl~n~~n 527 (774)
T KOG0731|consen 514 -TPGFSGADLANLCN 527 (774)
T ss_pred -CCCCcHHHHHhhhh
Confidence 89999999999988
No 6
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-36 Score=313.40 Aligned_cols=215 Identities=22% Similarity=0.344 Sum_probs=186.2
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccc----
Q 010133 198 HPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEV---- 273 (517)
Q Consensus 198 ~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~---- 273 (517)
+..+|++|++.++++.++...+...+++++.|+++|+..|.|+|||||||||||.||+|+||+.+.+|+.|...++
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkY 585 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKY 585 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHH
Confidence 5568999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred --cChHHHHHHHHhcc--CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHH
Q 010133 274 --HNNSELRKLLMKTS--SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSG 349 (517)
Q Consensus 274 --~~~~~L~~lf~~~~--~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 349 (517)
+++..++.+|..+. .|||||+||||+++. +|. .+..+.+.+.+++
T Consensus 586 VGESErAVR~vFqRAR~saPCVIFFDEiDaL~p---~R~----------------------------~~~s~~s~RvvNq 634 (802)
T KOG0733|consen 586 VGESERAVRQVFQRARASAPCVIFFDEIDALVP---RRS----------------------------DEGSSVSSRVVNQ 634 (802)
T ss_pred hhhHHHHHHHHHHHhhcCCCeEEEecchhhcCc---ccC----------------------------CCCchhHHHHHHH
Confidence 35677999998774 899999999999853 222 1124557889999
Q ss_pred HHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCC-CChHhHHHHHHhh
Q 010133 350 LLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESD-LEDETLKELEDVV 428 (517)
Q Consensus 350 LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~-~~~~~~~~i~~l~ 428 (517)
||.+|||+... .++.||++||+|+.+|||++||||||..+++++|+.++|..|++......... .++..+++|++..
T Consensus 635 LLtElDGl~~R--~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~ 712 (802)
T KOG0733|consen 635 LLTELDGLEER--RGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNT 712 (802)
T ss_pred HHHHhcccccc--cceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcc
Confidence 99999999654 56999999999999999999999999999999999999999999987643222 2245688998886
Q ss_pred CCCCCCHHHHHHHHHHh
Q 010133 429 GKAEMTPADISEVLIKN 445 (517)
Q Consensus 429 ~~~~~spadi~~~l~~~ 445 (517)
.-.|||+|||+.++...
T Consensus 713 ~c~gftGADLaaLvreA 729 (802)
T KOG0733|consen 713 KCEGFTGADLAALVREA 729 (802)
T ss_pred cccCCchhhHHHHHHHH
Confidence 56799999999988643
No 7
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-36 Score=313.04 Aligned_cols=221 Identities=24% Similarity=0.325 Sum_probs=187.9
Q ss_pred CCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccc------
Q 010133 200 STFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEV------ 273 (517)
Q Consensus 200 ~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~------ 273 (517)
.+|++++|.+....++.+.+.. ++.++.|..+|+.++||+|||||||||||+||+|+|+++++||+.++..++
T Consensus 187 v~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSG 265 (802)
T KOG0733|consen 187 VSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSG 265 (802)
T ss_pred cchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCc
Confidence 3799999999999998775555 999999999999999999999999999999999999999999999998887
Q ss_pred cChHHHHHHHHhcc--CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHH
Q 010133 274 HNNSELRKLLMKTS--SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLL 351 (517)
Q Consensus 274 ~~~~~L~~lf~~~~--~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 351 (517)
.++..++.+|.++. .||||||||||++. ++|. ....+..++.+++||
T Consensus 266 ESEkkiRelF~~A~~~aPcivFiDeIDAI~---pkRe----------------------------~aqreMErRiVaQLl 314 (802)
T KOG0733|consen 266 ESEKKIRELFDQAKSNAPCIVFIDEIDAIT---PKRE----------------------------EAQREMERRIVAQLL 314 (802)
T ss_pred ccHHHHHHHHHHHhccCCeEEEeecccccc---cchh----------------------------hHHHHHHHHHHHHHH
Confidence 36788999999885 89999999999983 3332 112345688999999
Q ss_pred HhhcCCccc--CCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhhC
Q 010133 352 NFTDGLWSC--CGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDVVG 429 (517)
Q Consensus 352 n~lDg~~s~--~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~~ 429 (517)
+.||++... .|..++||++||+|+.|||||+|+||||..|.++.|+..+|..|++..+....... .-.+..|+.+
T Consensus 315 t~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~~qlA~l-- 391 (802)
T KOG0733|consen 315 TSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDFKQLAKL-- 391 (802)
T ss_pred HhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCHHHHHhc--
Confidence 999998644 35779999999999999999999999999999999999999999998876443222 4568888888
Q ss_pred CCCCCHHHHHHHHHHhcccHHHHHHHHHH
Q 010133 430 KAEMTPADISEVLIKNKRDKCKAVRELLE 458 (517)
Q Consensus 430 ~~~~spadi~~~l~~~~~~~~~al~~l~~ 458 (517)
+.||.+||+..++- .....|++.+.+
T Consensus 392 TPGfVGADL~AL~~---~Aa~vAikR~ld 417 (802)
T KOG0733|consen 392 TPGFVGADLMALCR---EAAFVAIKRILD 417 (802)
T ss_pred CCCccchhHHHHHH---HHHHHHHHHHhh
Confidence 89999999999885 345667776544
No 8
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-34 Score=271.02 Aligned_cols=215 Identities=26% Similarity=0.343 Sum_probs=177.4
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccc---
Q 010133 197 KHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEV--- 273 (517)
Q Consensus 197 ~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~--- 273 (517)
.+..++.++.|.+-+|++|.+.++..+...+.|+++|+.+|||+|||||||||||+|++|+|++....|+.+..+++
T Consensus 149 kpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqk 228 (408)
T KOG0727|consen 149 KPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK 228 (408)
T ss_pred CCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHH
Confidence 34458999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred ---cChHHHHHHHHhc--cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHH
Q 010133 274 ---HNNSELRKLLMKT--SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLS 348 (517)
Q Consensus 274 ---~~~~~L~~lf~~~--~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 348 (517)
..+..++.+|.-+ +.|+||||||||++.. +|- ....+.+..-++.|-
T Consensus 229 ylgegprmvrdvfrlakenapsiifideidaiat---krf-------------------------daqtgadrevqril~ 280 (408)
T KOG0727|consen 229 YLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIAT---KRF-------------------------DAQTGADREVQRILI 280 (408)
T ss_pred HhccCcHHHHHHHHHHhccCCcEEEeehhhhHhh---hhc-------------------------cccccccHHHHHHHH
Confidence 3567788888655 5899999999999841 221 011123456788999
Q ss_pred HHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhh
Q 010133 349 GLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDVV 428 (517)
Q Consensus 349 ~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~ 428 (517)
.|||.|||+... .++-+||+||+.+.|||||+||||+|++|+||+|+..+++-+|........... +.+++.+- .
T Consensus 281 ellnqmdgfdq~--~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~-~vdle~~v--~ 355 (408)
T KOG0727|consen 281 ELLNQMDGFDQT--TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSD-EVDLEDLV--A 355 (408)
T ss_pred HHHHhccCcCcc--cceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCc-ccCHHHHh--c
Confidence 999999999664 458899999999999999999999999999999999998888877655443222 22333332 2
Q ss_pred CCCCCCHHHHHHHHHH
Q 010133 429 GKAEMTPADISEVLIK 444 (517)
Q Consensus 429 ~~~~~spadi~~~l~~ 444 (517)
.....|+|||..+|..
T Consensus 356 rpdkis~adi~aicqe 371 (408)
T KOG0727|consen 356 RPDKISGADINAICQE 371 (408)
T ss_pred CccccchhhHHHHHHH
Confidence 3688999999999874
No 9
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-34 Score=303.69 Aligned_cols=213 Identities=32% Similarity=0.454 Sum_probs=183.3
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccc---
Q 010133 197 KHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEV--- 273 (517)
Q Consensus 197 ~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~--- 273 (517)
....+|.+|+|.++.|+++.+ +.+|++.+..|..+|...|+|+||+||||||||+||+|+|++.+.|++.++.+++
T Consensus 144 ~~~v~F~DVAG~dEakeel~E-iVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSE-LVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHH-HHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 345689999999999999865 8999999999999999999999999999999999999999999999999999986
Q ss_pred ---cChHHHHHHHHhcc--CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHH
Q 010133 274 ---HNNSELRKLLMKTS--SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLS 348 (517)
Q Consensus 274 ---~~~~~L~~lf~~~~--~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 348 (517)
...+.+|.+|.++. .||||||||||+. ++.+ +.+ .++++.....|++
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAv----Gr~R-----------------------g~g-~GggnderEQTLN 274 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAV----GRQR-----------------------GAG-LGGGNDEREQTLN 274 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhc----cccc-----------------------CCC-CCCCchHHHHHHH
Confidence 36789999999886 6999999999986 3322 111 2344566778999
Q ss_pred HHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhh
Q 010133 349 GLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDVV 428 (517)
Q Consensus 349 ~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~ 428 (517)
+||.+|||+.++ .++|+|++||+|+.|||||+||||||++|.++.|+...|.++++-++...... ....+..|++.
T Consensus 275 QlLvEmDGF~~~--~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-~~Vdl~~iAr~- 350 (596)
T COG0465 275 QLLVEMDGFGGN--EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-EDVDLKKIARG- 350 (596)
T ss_pred HHHhhhccCCCC--CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-CcCCHHHHhhh-
Confidence 999999999754 56999999999999999999999999999999999999999999877655433 23445557776
Q ss_pred CCCCCCHHHHHHHHH
Q 010133 429 GKAEMTPADISEVLI 443 (517)
Q Consensus 429 ~~~~~spadi~~~l~ 443 (517)
+.||++||+.++++
T Consensus 351 -tpGfsGAdL~nl~N 364 (596)
T COG0465 351 -TPGFSGADLANLLN 364 (596)
T ss_pred -CCCcccchHhhhHH
Confidence 89999999999986
No 10
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-33 Score=268.40 Aligned_cols=213 Identities=28% Similarity=0.343 Sum_probs=179.3
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccc----
Q 010133 198 HPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEV---- 273 (517)
Q Consensus 198 ~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~---- 273 (517)
+..+++-+.+.+.+.++|.+-++...+.++.|..+|++.|+|+|||||||||||.||+|+|.+..+.|+.++.+++
T Consensus 142 PDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~ 221 (404)
T KOG0728|consen 142 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 221 (404)
T ss_pred CccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHH
Confidence 4457888999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred --cChHHHHHHHHhcc--CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHH
Q 010133 274 --HNNSELRKLLMKTS--SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSG 349 (517)
Q Consensus 274 --~~~~~L~~lf~~~~--~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 349 (517)
....-++.+|..+. .|||||.||||++-. .|. .++.++++.-++|+-.
T Consensus 222 igegsrmvrelfvmarehapsiifmdeidsigs---~r~-------------------------e~~~ggdsevqrtmle 273 (404)
T KOG0728|consen 222 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS---SRV-------------------------ESGSGGDSEVQRTMLE 273 (404)
T ss_pred hhhhHHHHHHHHHHHHhcCCceEeeeccccccc---ccc-------------------------cCCCCccHHHHHHHHH
Confidence 24556889988774 899999999998731 111 1123346677899999
Q ss_pred HHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhhC
Q 010133 350 LLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDVVG 429 (517)
Q Consensus 350 LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~~ 429 (517)
|||.+||+-.. .++-+||+||+++.|||||+||||+|++|+||+|+.++|..|++.+-......- .-.+..|++.+
T Consensus 274 llnqldgfeat--knikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~r-gi~l~kiaekm- 349 (404)
T KOG0728|consen 274 LLNQLDGFEAT--KNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTR-GINLRKIAEKM- 349 (404)
T ss_pred HHHhccccccc--cceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhc-ccCHHHHHHhC-
Confidence 99999999664 568899999999999999999999999999999999999999998765433210 12466777764
Q ss_pred CCCCCHHHHHHHHH
Q 010133 430 KAEMTPADISEVLI 443 (517)
Q Consensus 430 ~~~~spadi~~~l~ 443 (517)
.|.|+|++.++|.
T Consensus 350 -~gasgaevk~vct 362 (404)
T KOG0728|consen 350 -PGASGAEVKGVCT 362 (404)
T ss_pred -CCCccchhhhhhh
Confidence 6899999999886
No 11
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-33 Score=278.17 Aligned_cols=255 Identities=25% Similarity=0.308 Sum_probs=195.8
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecccc---
Q 010133 198 HPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVH--- 274 (517)
Q Consensus 198 ~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~--- 274 (517)
+...|++|+|..+.|+-|.+.+...+.-|++|+.+-.||+ |+|++||||||||+||+|+|.+++..|+.|+-+.+.
T Consensus 207 p~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWk-gvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKw 285 (491)
T KOG0738|consen 207 PNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWK-GVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKW 285 (491)
T ss_pred CCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccc-eeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhh
Confidence 3358999999999999999999999999999999999997 999999999999999999999999999999988874
Q ss_pred ---ChHHHHHHHHhcc--CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHH
Q 010133 275 ---NNSELRKLLMKTS--SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSG 349 (517)
Q Consensus 275 ---~~~~L~~lf~~~~--~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 349 (517)
++.-++-||..+. .|++|||||||+++. +|. +.++++.+++..++
T Consensus 286 RGeSEKlvRlLFemARfyAPStIFiDEIDslcs---~RG---------------------------~s~EHEaSRRvKsE 335 (491)
T KOG0738|consen 286 RGESEKLVRLLFEMARFYAPSTIFIDEIDSLCS---QRG---------------------------GSSEHEASRRVKSE 335 (491)
T ss_pred ccchHHHHHHHHHHHHHhCCceeehhhHHHHHh---cCC---------------------------CccchhHHHHHHHH
Confidence 3344566666554 899999999999863 221 12346778999999
Q ss_pred HHHhhcCCcccCCC--ceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHh
Q 010133 350 LLNFTDGLWSCCGS--EKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDV 427 (517)
Q Consensus 350 LLn~lDg~~s~~~~--~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l 427 (517)
||..|||+...... -++|+++||.|+.||+||+| ||.+.|++++|+.+.|..|++..++....+ ++..++.|++.
T Consensus 336 LLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~-~~~~~~~lae~ 412 (491)
T KOG0738|consen 336 LLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELD-DPVNLEDLAER 412 (491)
T ss_pred HHHHhhccccccccceeEEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCC-CCccHHHHHHH
Confidence 99999999654222 25677899999999999999 999999999999999999999988765432 24456667666
Q ss_pred hCCCCCCHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhhhcCCccccCCChhHHHHHHHhhcCCCCccchhhhhc-cC
Q 010133 428 VGKAEMTPADISEVLIKNKRDKCKAVRELLETLKVKAEKNVKHGGIIVKNSDYEEEEQEKRALESPIEGSDIEDANN-CE 506 (517)
Q Consensus 428 ~~~~~~spadi~~~l~~~~~~~~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~~~~~~~~~-~~ 506 (517)
..|||++||..+|... ...+++..+..+. +.+....+++....|+..+||+.|.- ++
T Consensus 413 --~eGySGaDI~nvCreA---sm~~mRR~i~g~~-----------------~~ei~~lakE~~~~pv~~~Dfe~Al~~v~ 470 (491)
T KOG0738|consen 413 --SEGYSGADITNVCREA---SMMAMRRKIAGLT-----------------PREIRQLAKEEPKMPVTNEDFEEALRKVR 470 (491)
T ss_pred --hcCCChHHHHHHHHHH---HHHHHHHHHhcCC-----------------cHHhhhhhhhccccccchhhHHHHHHHcC
Confidence 5899999999998633 2223332221111 11122233334457888999999873 44
Q ss_pred CC
Q 010133 507 EG 508 (517)
Q Consensus 507 ~~ 508 (517)
..
T Consensus 471 pS 472 (491)
T KOG0738|consen 471 PS 472 (491)
T ss_pred cC
Confidence 33
No 12
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-33 Score=296.62 Aligned_cols=215 Identities=25% Similarity=0.353 Sum_probs=177.1
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccc---
Q 010133 197 KHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEV--- 273 (517)
Q Consensus 197 ~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~--- 273 (517)
-+..+|++|+|.+++|.+|++.|...++.++.|.. |...+-|+|||||||||||.||+|+|.++.+.|+.|...++
T Consensus 666 IPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNM 744 (953)
T KOG0736|consen 666 IPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNM 744 (953)
T ss_pred CCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHH
Confidence 34568999999999999999999999999998875 77778899999999999999999999999999999987776
Q ss_pred ---cChHHHHHHHHhcc--CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHH
Q 010133 274 ---HNNSELRKLLMKTS--SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLS 348 (517)
Q Consensus 274 ---~~~~~L~~lf~~~~--~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 348 (517)
+++.++|++|.++. +|||||+||+|.+.+.+|+.. .+.+...+.+|
T Consensus 745 YVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sG-----------------------------DSGGVMDRVVS 795 (953)
T KOG0736|consen 745 YVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSG-----------------------------DSGGVMDRVVS 795 (953)
T ss_pred HhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCC-----------------------------CccccHHHHHH
Confidence 57889999999885 899999999999865444332 23455778999
Q ss_pred HHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCC-HHHHHHHHHHhcCCCCCCCChHhHHHHHHh
Q 010133 349 GLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCS-YPALLILLKNYLGYEESDLEDETLKELEDV 427 (517)
Q Consensus 349 ~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~-~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l 427 (517)
+||.+|||+.......+.||++||+||-|||||+||||||+-+++++|. .+....+++..-+.-..+. +..+.+|++.
T Consensus 796 QLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLde-dVdL~eiAk~ 874 (953)
T KOG0736|consen 796 QLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDE-DVDLVEIAKK 874 (953)
T ss_pred HHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCC-CcCHHHHHhh
Confidence 9999999998655678999999999999999999999999999999994 4555555554322111111 4457777777
Q ss_pred hCCCCCCHHHHHHHHH
Q 010133 428 VGKAEMTPADISEVLI 443 (517)
Q Consensus 428 ~~~~~~spadi~~~l~ 443 (517)
. ..+||+||+=.+|.
T Consensus 875 c-p~~~TGADlYsLCS 889 (953)
T KOG0736|consen 875 C-PPNMTGADLYSLCS 889 (953)
T ss_pred C-CcCCchhHHHHHHH
Confidence 6 57899999988875
No 13
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1.7e-32 Score=287.35 Aligned_cols=235 Identities=24% Similarity=0.308 Sum_probs=186.7
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecccc-
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVH- 274 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~- 274 (517)
..+..+|++|+|.+.+|++|.+.+..++..++.|.+.|+++++|+|||||||||||++|+++|++++.+++.+..+.+.
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999999877652
Q ss_pred -----ChHHHHHHHHhc--cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHH
Q 010133 275 -----NNSELRKLLMKT--SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITL 347 (517)
Q Consensus 275 -----~~~~L~~lf~~~--~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 347 (517)
+...++.+|..+ ..||||||||||+++. .+. + ...+.+......+
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~---~r~---~----------------------~~~~~d~~~~r~l 269 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIAT---KRF---D----------------------AQTGADREVQRIL 269 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhcc---ccc---c----------------------ccCCccHHHHHHH
Confidence 345577787665 4899999999999852 111 0 0001123456788
Q ss_pred HHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHh
Q 010133 348 SGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDV 427 (517)
Q Consensus 348 s~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l 427 (517)
..||+.+||+... .+++||+|||+++.|||||+||||||.+|+|++|+.++|..|++.++...... .+..+..++..
T Consensus 270 ~~LL~~ld~~~~~--~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~-~dvd~~~la~~ 346 (398)
T PTZ00454 270 LELLNQMDGFDQT--TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-EEVDLEDFVSR 346 (398)
T ss_pred HHHHHHhhccCCC--CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC-cccCHHHHHHH
Confidence 9999999998654 45889999999999999999999999999999999999999999988654432 13346666665
Q ss_pred hCCCCCCHHHHHHHHHHhc------ccHHHHHHHHHHHHHHH
Q 010133 428 VGKAEMTPADISEVLIKNK------RDKCKAVRELLETLKVK 463 (517)
Q Consensus 428 ~~~~~~spadi~~~l~~~~------~~~~~al~~l~~~l~~~ 463 (517)
+.|||||||..+|.... .......+++.+++++.
T Consensus 347 --t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v 386 (398)
T PTZ00454 347 --PEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTV 386 (398)
T ss_pred --cCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 78999999999987432 11234445555555554
No 14
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-33 Score=273.15 Aligned_cols=216 Identities=26% Similarity=0.328 Sum_probs=174.9
Q ss_pred ccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccc-
Q 010133 195 SFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEV- 273 (517)
Q Consensus 195 ~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~- 273 (517)
...+..+|.++.|.+.+.++|.+.++..+..+++|...|+.+|+|++|||+||||||.||+|+||.....|+.+-.+++
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence 3445568999999999999999999999999999999999999999999999999999999999999999988877776
Q ss_pred -----cChHHHHHHHHhc--cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhH
Q 010133 274 -----HNNSELRKLLMKT--SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSIT 346 (517)
Q Consensus 274 -----~~~~~L~~lf~~~--~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (517)
....-++++|.-+ .+|||+||||||++- .+|- + +.+++...-++|
T Consensus 257 QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiG---tKRy---d----------------------s~SggerEiQrt 308 (440)
T KOG0726|consen 257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIG---TKRY---D----------------------SNSGGEREIQRT 308 (440)
T ss_pred HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhc---cccc---c----------------------CCCccHHHHHHH
Confidence 2456678888766 489999999999972 1221 0 112234456789
Q ss_pred HHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHH
Q 010133 347 LSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELED 426 (517)
Q Consensus 347 ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~ 426 (517)
+-.|||.+||+.+. +.+-|||+||+++.|||||+||||+|++|+|+.|+...++.||..+-......- +..++.+-
T Consensus 309 mLELLNQldGFdsr--gDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~-dVnle~li- 384 (440)
T KOG0726|consen 309 MLELLNQLDGFDSR--GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAE-DVNLEELI- 384 (440)
T ss_pred HHHHHHhccCcccc--CCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhc-cccHHHHh-
Confidence 99999999999774 678999999999999999999999999999999999999998876643322111 12233321
Q ss_pred hhCCCCCCHHHHHHHHH
Q 010133 427 VVGKAEMTPADISEVLI 443 (517)
Q Consensus 427 l~~~~~~spadi~~~l~ 443 (517)
.....+|+|||..+|.
T Consensus 385 -~~kddlSGAdIkAict 400 (440)
T KOG0726|consen 385 -MTKDDLSGADIKAICT 400 (440)
T ss_pred -hcccccccccHHHHHH
Confidence 1257899999999886
No 15
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-32 Score=260.02 Aligned_cols=215 Identities=25% Similarity=0.288 Sum_probs=177.3
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccc--
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEV-- 273 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~-- 273 (517)
-++..+++++.|.+.+.+++++.+...+..++.|.++|+.+|+|+|+|||||||||.||+|.|...+..|..+-...+
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 345568999999999999999999999999999999999999999999999999999999999999988877765554
Q ss_pred ---c-ChHHHHHHHHhc--cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHH
Q 010133 274 ---H-NNSELRKLLMKT--SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITL 347 (517)
Q Consensus 274 ---~-~~~~L~~lf~~~--~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 347 (517)
. ...-++..|.-+ ..|+||||||+|++- .+|. + +...++..-++|+
T Consensus 244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIG---tKRf---D----------------------Sek~GDREVQRTM 295 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIG---TKRF---D----------------------SEKAGDREVQRTM 295 (424)
T ss_pred hhhcchHHHHHHHHHHhhccCCeEEEEechhhhc---cccc---c----------------------ccccccHHHHHHH
Confidence 1 234467777655 589999999999972 1221 0 0112345678999
Q ss_pred HHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHh
Q 010133 348 SGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDV 427 (517)
Q Consensus 348 s~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l 427 (517)
-.|||.+||+.|. ..+-+|++||+.+.|||||+|.||+|++|+||.|+.++|..|++.+....... ++..|+++++.
T Consensus 296 LELLNQLDGFss~--~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~-~DvNfeELaRs 372 (424)
T KOG0652|consen 296 LELLNQLDGFSSD--DRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVS-DDVNFEELARS 372 (424)
T ss_pred HHHHHhhcCCCCc--cceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCC-CCCCHHHHhhc
Confidence 9999999999765 55789999999999999999999999999999999999999999876554432 24568888876
Q ss_pred hCCCCCCHHHHHHHHH
Q 010133 428 VGKAEMTPADISEVLI 443 (517)
Q Consensus 428 ~~~~~~spadi~~~l~ 443 (517)
+.+|.+|+...+|.
T Consensus 373 --TddFNGAQcKAVcV 386 (424)
T KOG0652|consen 373 --TDDFNGAQCKAVCV 386 (424)
T ss_pred --ccccCchhheeeeh
Confidence 78999999987776
No 16
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.97 E-value=6.8e-31 Score=275.88 Aligned_cols=238 Identities=25% Similarity=0.291 Sum_probs=188.2
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecccc-
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVH- 274 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~- 274 (517)
..+..+|++|+|.+++++++.+.+...+..++.|..+|+++++|+|||||||||||++|+++|++++.+++.++++.+.
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 3455689999999999999999999999999999999999999999999999999999999999999999999988763
Q ss_pred -----ChHHHHHHHHhc--cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHH
Q 010133 275 -----NNSELRKLLMKT--SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITL 347 (517)
Q Consensus 275 -----~~~~L~~lf~~~--~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 347 (517)
+...++.+|..+ ..||||||||||.++. .+.. .....+.....++
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~---~r~~-------------------------~~~~~~~~~~~~l 255 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAA---KRTD-------------------------SGTSGDREVQRTL 255 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhc---cccc-------------------------CCCCccHHHHHHH
Confidence 345577788765 3789999999999852 1110 0001123346678
Q ss_pred HHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHh
Q 010133 348 SGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDV 427 (517)
Q Consensus 348 s~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l 427 (517)
..||+.+||+.+. .+.+||+|||+++.||+||+||||||..|++++|+.++|..|++.++....... +..+..++..
T Consensus 256 ~~lL~~ld~~~~~--~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~-~~~~~~la~~ 332 (389)
T PRK03992 256 MQLLAEMDGFDPR--GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLAD-DVDLEELAEL 332 (389)
T ss_pred HHHHHhccccCCC--CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCC-cCCHHHHHHH
Confidence 8999999998543 468899999999999999999999999999999999999999999886543221 2346677766
Q ss_pred hCCCCCCHHHHHHHHHHhcc------cHHHHHHHHHHHHHHHHHh
Q 010133 428 VGKAEMTPADISEVLIKNKR------DKCKAVRELLETLKVKAEK 466 (517)
Q Consensus 428 ~~~~~~spadi~~~l~~~~~------~~~~al~~l~~~l~~~~~~ 466 (517)
+.||+++||..+|..... ......+++.++++.....
T Consensus 333 --t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~~~~ 375 (389)
T PRK03992 333 --TEGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKVMGK 375 (389)
T ss_pred --cCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhcc
Confidence 789999999998874321 1223455666666655443
No 17
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=8.7e-31 Score=279.76 Aligned_cols=183 Identities=24% Similarity=0.359 Sum_probs=150.5
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCce--------EEE
Q 010133 197 KHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDI--------YDL 268 (517)
Q Consensus 197 ~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i--------~~l 268 (517)
.++.+|++|+|.+.++++|.+.+...+..+++|...|+++++|+|||||||||||++++++|++++.++ +.+
T Consensus 176 ~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl 255 (512)
T TIGR03689 176 VPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFL 255 (512)
T ss_pred CCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEE
Confidence 456789999999999999999999999999999999999999999999999999999999999997652 223
Q ss_pred ee--ccc------cChHHHHHHHHhcc------CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCC
Q 010133 269 EL--TEV------HNNSELRKLLMKTS------SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSG 334 (517)
Q Consensus 269 ~l--~~~------~~~~~L~~lf~~~~------~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (517)
++ +.+ .+...++.+|..+. .||||||||||+++...+.
T Consensus 256 ~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~---------------------------- 307 (512)
T TIGR03689 256 NIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGS---------------------------- 307 (512)
T ss_pred eccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCC----------------------------
Confidence 32 222 13445777776542 5899999999998631110
Q ss_pred CCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCC
Q 010133 335 SVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGY 411 (517)
Q Consensus 335 ~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~ 411 (517)
+..+......+++||+.|||+.+. ++++||+|||+++.|||||+||||||.+|+|++|+.++++.|++.|+..
T Consensus 308 --~~s~d~e~~il~~LL~~LDgl~~~--~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 308 --GVSSDVETTVVPQLLSELDGVESL--DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred --CccchHHHHHHHHHHHHhcccccC--CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 001223456789999999999764 4689999999999999999999999999999999999999999999864
No 18
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-31 Score=255.75 Aligned_cols=217 Identities=24% Similarity=0.252 Sum_probs=181.2
Q ss_pred cccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccc
Q 010133 194 VSFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEV 273 (517)
Q Consensus 194 ~~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~ 273 (517)
+...+-.|+++|.|-.++.+.+.+-++..+-+++.|-++|+.+|+|+|||||||||||..|+|+||..+.-|+.+-.+++
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigsel 247 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSEL 247 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHH
Confidence 44556679999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred ------cChHHHHHHHHhcc--CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhh
Q 010133 274 ------HNNSELRKLLMKTS--SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSI 345 (517)
Q Consensus 274 ------~~~~~L~~lf~~~~--~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (517)
.....++.+|..+. .-||||+||||++- |.|- ..+.+++..-++
T Consensus 248 vqkyvgegarmvrelf~martkkaciiffdeidaig---garf-------------------------ddg~ggdnevqr 299 (435)
T KOG0729|consen 248 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIG---GARF-------------------------DDGAGGDNEVQR 299 (435)
T ss_pred HHHHhhhhHHHHHHHHHHhcccceEEEEeecccccc---Cccc-------------------------cCCCCCcHHHHH
Confidence 24556889998775 55999999999972 2221 011234556789
Q ss_pred HHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHH
Q 010133 346 TLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELE 425 (517)
Q Consensus 346 ~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~ 425 (517)
|+..|+|.+||+... +++-++|+||+|+.|||||+||||+|++|+|++|+.+.|..|++.+......+- +--++.|+
T Consensus 300 tmleli~qldgfdpr--gnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsver-dir~ella 376 (435)
T KOG0729|consen 300 TMLELINQLDGFDPR--GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVER-DIRFELLA 376 (435)
T ss_pred HHHHHHHhccCCCCC--CCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEecccccccc-chhHHHHH
Confidence 999999999999654 668899999999999999999999999999999999999999887754433211 23477788
Q ss_pred HhhCCCCCCHHHHHHHHH
Q 010133 426 DVVGKAEMTPADISEVLI 443 (517)
Q Consensus 426 ~l~~~~~~spadi~~~l~ 443 (517)
++ -.+-|+|+|..+|.
T Consensus 377 rl--cpnstgaeirsvct 392 (435)
T KOG0729|consen 377 RL--CPNSTGAEIRSVCT 392 (435)
T ss_pred hh--CCCCcchHHHHHHH
Confidence 88 46788999999887
No 19
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=5.2e-31 Score=285.42 Aligned_cols=234 Identities=28% Similarity=0.384 Sum_probs=186.1
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecccc--
Q 010133 197 KHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVH-- 274 (517)
Q Consensus 197 ~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~-- 274 (517)
.+..+|++|+|.++.|+++.+ +..|++.++.|...|.+.++|+|||||||||||++++++|++++.+++.++++.+.
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~-~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 127 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELME-IVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 127 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHH-HHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH
Confidence 456799999999999999875 66689999999999999999999999999999999999999999999999987652
Q ss_pred ----ChHHHHHHHHhc--cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHH
Q 010133 275 ----NNSELRKLLMKT--SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLS 348 (517)
Q Consensus 275 ----~~~~L~~lf~~~--~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 348 (517)
+...++.+|..+ ..||||||||||+++...+.. ..+.......+++
T Consensus 128 ~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~----------------------------~~~~~~~~~~~~~ 179 (495)
T TIGR01241 128 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAG----------------------------LGGGNDEREQTLN 179 (495)
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccC----------------------------cCCccHHHHHHHH
Confidence 456788999876 478999999999985211100 0011233567899
Q ss_pred HHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhh
Q 010133 349 GLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDVV 428 (517)
Q Consensus 349 ~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~ 428 (517)
.||+.|||+.++ .+++||+|||+++.|||||+||||||.+|+++.|+.++|..|++.++...... .+..+..++..
T Consensus 180 ~lL~~~d~~~~~--~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~- 255 (495)
T TIGR01241 180 QLLVEMDGFGTN--TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARR- 255 (495)
T ss_pred HHHhhhccccCC--CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHh-
Confidence 999999999654 45899999999999999999999999999999999999999999998654422 23345666665
Q ss_pred CCCCCCHHHHHHHHHHhc------ccHHHHHHHHHHHHHHHH
Q 010133 429 GKAEMTPADISEVLIKNK------RDKCKAVRELLETLKVKA 464 (517)
Q Consensus 429 ~~~~~spadi~~~l~~~~------~~~~~al~~l~~~l~~~~ 464 (517)
+.|||++||..++.... .......+.+.++++...
T Consensus 256 -t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 256 -TPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDRVI 296 (495)
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 78999999999887321 122345566666666553
No 20
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.97 E-value=2.9e-31 Score=283.66 Aligned_cols=208 Identities=24% Similarity=0.304 Sum_probs=168.4
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecccc---
Q 010133 198 HPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVH--- 274 (517)
Q Consensus 198 ~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~--- 274 (517)
+..+|++|+|.+..|+.+.+....|.. .+.+.|++.++|+|||||||||||++|+|+|++++.+++.++++.+.
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~~~---~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSFSK---QASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHhhH---HHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 345799999999999988776665543 34677999999999999999999999999999999999999987652
Q ss_pred ---ChHHHHHHHHhc--cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHH
Q 010133 275 ---NNSELRKLLMKT--SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSG 349 (517)
Q Consensus 275 ---~~~~L~~lf~~~--~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 349 (517)
++..++++|..+ ..||||||||||.++...+. .+..+.....+..
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~------------------------------~~d~~~~~rvl~~ 349 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSES------------------------------KGDSGTTNRVLAT 349 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccC------------------------------CCCchHHHHHHHH
Confidence 456788998754 48999999999997521000 0112345678899
Q ss_pred HHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCC-CChHhHHHHHHhh
Q 010133 350 LLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESD-LEDETLKELEDVV 428 (517)
Q Consensus 350 LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~-~~~~~~~~i~~l~ 428 (517)
||..|+.. ...++||+|||+++.|||||+||||||..|+++.|+.++|..|++.++...... .....++.++..
T Consensus 350 lL~~l~~~----~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~- 424 (489)
T CHL00195 350 FITWLSEK----KSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKL- 424 (489)
T ss_pred HHHHHhcC----CCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhh-
Confidence 99998864 345889999999999999999999999999999999999999999998765322 224456777776
Q ss_pred CCCCCCHHHHHHHHHH
Q 010133 429 GKAEMTPADISEVLIK 444 (517)
Q Consensus 429 ~~~~~spadi~~~l~~ 444 (517)
+.|||+|||..++..
T Consensus 425 -T~GfSGAdI~~lv~e 439 (489)
T CHL00195 425 -SNKFSGAEIEQSIIE 439 (489)
T ss_pred -cCCCCHHHHHHHHHH
Confidence 789999999988763
No 21
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=1.3e-30 Score=274.91 Aligned_cols=236 Identities=24% Similarity=0.286 Sum_probs=184.2
Q ss_pred ccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecccc
Q 010133 195 SFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVH 274 (517)
Q Consensus 195 ~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~ 274 (517)
...++.+|++|+|.+.++++|.+.+...+.++++|..+|+.+++|+|||||||||||++|+++|++++.+++.+..+++.
T Consensus 175 ~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~ 254 (438)
T PTZ00361 175 DKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELI 254 (438)
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhh
Confidence 34456799999999999999999999999999999999999999999999999999999999999999999999887762
Q ss_pred ------ChHHHHHHHHhc--cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhH
Q 010133 275 ------NNSELRKLLMKT--SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSIT 346 (517)
Q Consensus 275 ------~~~~L~~lf~~~--~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (517)
+...++.+|..+ ..||||||||||+++. ++.. ...+.......+
T Consensus 255 ~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~---kR~~-------------------------~~sgg~~e~qr~ 306 (438)
T PTZ00361 255 QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGT---KRYD-------------------------ATSGGEKEIQRT 306 (438)
T ss_pred hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhc---cCCC-------------------------CCCcccHHHHHH
Confidence 234477777655 4789999999999852 1110 001112234567
Q ss_pred HHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHH
Q 010133 347 LSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELED 426 (517)
Q Consensus 347 ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~ 426 (517)
+..||+.+||+... .++.||+|||+++.|||||+||||||.+|+|++|+.++|..|++.++....... ...+..++.
T Consensus 307 ll~LL~~Ldg~~~~--~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~-dvdl~~la~ 383 (438)
T PTZ00361 307 MLELLNQLDGFDSR--GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAE-DVDLEEFIM 383 (438)
T ss_pred HHHHHHHHhhhccc--CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCc-CcCHHHHHH
Confidence 88999999998543 458999999999999999999999999999999999999999999886543221 234555555
Q ss_pred hhCCCCCCHHHHHHHHHHhc------ccHHHHHHHHHHHHHHH
Q 010133 427 VVGKAEMTPADISEVLIKNK------RDKCKAVRELLETLKVK 463 (517)
Q Consensus 427 l~~~~~~spadi~~~l~~~~------~~~~~al~~l~~~l~~~ 463 (517)
. +.++|+|||..+|.... .......+++.+++++.
T Consensus 384 ~--t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 384 A--KDELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEKV 424 (438)
T ss_pred h--cCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHH
Confidence 4 78999999999886321 11233444555555554
No 22
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.4e-31 Score=257.80 Aligned_cols=208 Identities=23% Similarity=0.294 Sum_probs=181.5
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecccc---
Q 010133 198 HPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVH--- 274 (517)
Q Consensus 198 ~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~--- 274 (517)
+...|++|+|.+..|+.+.+.+...++-+.+|..-..||+ |+|||||||||||.||+|+|.+.+-.|+.++-+++.
T Consensus 128 PNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~Pwr-giLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKW 206 (439)
T KOG0739|consen 128 PNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWR-GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKW 206 (439)
T ss_pred CCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcce-eEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHH
Confidence 4457899999999999999999999999999999888996 999999999999999999999999999999988873
Q ss_pred ---ChHHHHHHHHhcc--CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHH
Q 010133 275 ---NNSELRKLLMKTS--SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSG 349 (517)
Q Consensus 275 ---~~~~L~~lf~~~~--~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 349 (517)
++.-+++||..+. .||||||||||.++ +.|. ++.++..++....
T Consensus 207 mGESEkLVknLFemARe~kPSIIFiDEiDslc---g~r~----------------------------enEseasRRIKTE 255 (439)
T KOG0739|consen 207 MGESEKLVKNLFEMARENKPSIIFIDEIDSLC---GSRS----------------------------ENESEASRRIKTE 255 (439)
T ss_pred hccHHHHHHHHHHHHHhcCCcEEEeehhhhhc---cCCC----------------------------CCchHHHHHHHHH
Confidence 3455788887764 89999999999875 2221 2235567889999
Q ss_pred HHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhhC
Q 010133 350 LLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDVVG 429 (517)
Q Consensus 350 LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~~ 429 (517)
||..|.|+... ..+++|+++||-|+.||.|++| ||+..|++|+|...+|..||+.+++.....+...++.++++.
T Consensus 256 fLVQMqGVG~d-~~gvLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~k-- 330 (439)
T KOG0739|consen 256 FLVQMQGVGND-NDGVLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARK-- 330 (439)
T ss_pred HHHhhhccccC-CCceEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhh--
Confidence 99999999654 4679999999999999999999 999999999999999999999999988877888889999887
Q ss_pred CCCCCHHHHHHHH
Q 010133 430 KAEMTPADISEVL 442 (517)
Q Consensus 430 ~~~~spadi~~~l 442 (517)
+.|||++||.-++
T Consensus 331 TeGySGsDisivV 343 (439)
T KOG0739|consen 331 TEGYSGSDISIVV 343 (439)
T ss_pred cCCCCcCceEEEe
Confidence 8999999987544
No 23
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.4e-30 Score=274.09 Aligned_cols=223 Identities=22% Similarity=0.292 Sum_probs=186.8
Q ss_pred CCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccc------
Q 010133 200 STFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEV------ 273 (517)
Q Consensus 200 ~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~------ 273 (517)
..+++++|..+.|+.+.+.+....+-+..|.+.+++.+.|+|||||||||||.||.|+|...++.|+.+...++
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIG 743 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIG 743 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred cChHHHHHHHHhcc--CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHH
Q 010133 274 HNNSELRKLLMKTS--SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLL 351 (517)
Q Consensus 274 ~~~~~L~~lf~~~~--~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 351 (517)
.++..+|.+|..+. .|||+|+||+|.+.+.+|. .+.+...+.+++||
T Consensus 744 aSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGh-------------------------------DsTGVTDRVVNQlL 792 (952)
T KOG0735|consen 744 ASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGH-------------------------------DSTGVTDRVVNQLL 792 (952)
T ss_pred ccHHHHHHHHHHhhccCCeEEEeccccccCcccCC-------------------------------CCCCchHHHHHHHH
Confidence 46788999998875 8999999999998532211 12345678999999
Q ss_pred HhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhhCCC
Q 010133 352 NFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDVVGKA 431 (517)
Q Consensus 352 n~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~~~~ 431 (517)
.+|||.-.- .++.|+++|.+||.|||||+||||+|+.|+.+.|+..+|..|++..-..... .++.+++.++.. +.
T Consensus 793 TelDG~Egl--~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~-~~~vdl~~~a~~--T~ 867 (952)
T KOG0735|consen 793 TELDGAEGL--DGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLK-DTDVDLECLAQK--TD 867 (952)
T ss_pred Hhhcccccc--ceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCC-ccccchHHHhhh--cC
Confidence 999998553 5699999999999999999999999999999999999999999876543221 125567778776 89
Q ss_pred CCCHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q 010133 432 EMTPADISEVLIKNKRDKCKAVRELLETLKVKA 464 (517)
Q Consensus 432 ~~spadi~~~l~~~~~~~~~al~~l~~~l~~~~ 464 (517)
|||+||++.+|-.. -+..+-++|.+..
T Consensus 868 g~tgADlq~ll~~A------~l~avh~~l~~~~ 894 (952)
T KOG0735|consen 868 GFTGADLQSLLYNA------QLAAVHEILKRED 894 (952)
T ss_pred CCchhhHHHHHHHH------HHHHHHHHHHhcC
Confidence 99999999998644 3444445555543
No 24
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=9.1e-30 Score=287.70 Aligned_cols=212 Identities=26% Similarity=0.335 Sum_probs=178.9
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccc----
Q 010133 198 HPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEV---- 273 (517)
Q Consensus 198 ~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~---- 273 (517)
+..+|++++|.+..|+.+.+.+...++.++.|.+.|+++++|+|||||||||||++|+|+|++++.+++.++++++
T Consensus 448 ~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 448 PNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKW 527 (733)
T ss_pred cccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcc
Confidence 3458999999999999999999999999999999999999999999999999999999999999999999998775
Q ss_pred --cChHHHHHHHHhc--cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHH
Q 010133 274 --HNNSELRKLLMKT--SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSG 349 (517)
Q Consensus 274 --~~~~~L~~lf~~~--~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 349 (517)
.++..++.+|..+ ..||||||||||.++...+.. .........+++
T Consensus 528 vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~------------------------------~~~~~~~~~~~~ 577 (733)
T TIGR01243 528 VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGAR------------------------------FDTSVTDRIVNQ 577 (733)
T ss_pred cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCC------------------------------CCccHHHHHHHH
Confidence 2456789999876 478999999999986311110 112235678999
Q ss_pred HHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhhC
Q 010133 350 LLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDVVG 429 (517)
Q Consensus 350 LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~~ 429 (517)
||..|||+... .+++||+|||+++.||||++||||||.+|++++|+.++|..|++.+....... ....++.++..
T Consensus 578 lL~~ldg~~~~--~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~-~~~~l~~la~~-- 652 (733)
T TIGR01243 578 LLTEMDGIQEL--SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLA-EDVDLEELAEM-- 652 (733)
T ss_pred HHHHhhcccCC--CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHH--
Confidence 99999998553 56899999999999999999999999999999999999999999887654322 13346777776
Q ss_pred CCCCCHHHHHHHHHH
Q 010133 430 KAEMTPADISEVLIK 444 (517)
Q Consensus 430 ~~~~spadi~~~l~~ 444 (517)
+.|||+|||..+|..
T Consensus 653 t~g~sgadi~~~~~~ 667 (733)
T TIGR01243 653 TEGYTGADIEAVCRE 667 (733)
T ss_pred cCCCCHHHHHHHHHH
Confidence 789999999998853
No 25
>CHL00176 ftsH cell division protein; Validated
Probab=99.97 E-value=5.1e-30 Score=281.98 Aligned_cols=213 Identities=28% Similarity=0.381 Sum_probs=175.9
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecccc--
Q 010133 197 KHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVH-- 274 (517)
Q Consensus 197 ~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~-- 274 (517)
....+|++|+|.++.|+++ ..+..|++.+..|...|...++|+|||||||||||++|+++|++++.+++.++++.+.
T Consensus 177 ~~~~~f~dv~G~~~~k~~l-~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~ 255 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEF-EEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM 255 (638)
T ss_pred CCCCCHHhccChHHHHHHH-HHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH
Confidence 4457899999999999887 5577889999999999999999999999999999999999999999999999988753
Q ss_pred ----ChHHHHHHHHhcc--CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHH
Q 010133 275 ----NNSELRKLLMKTS--SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLS 348 (517)
Q Consensus 275 ----~~~~L~~lf~~~~--~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 348 (517)
....++.+|..+. .||||||||||++....+.. ..+.+.....+++
T Consensus 256 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~----------------------------~~~~~~e~~~~L~ 307 (638)
T CHL00176 256 FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAG----------------------------IGGGNDEREQTLN 307 (638)
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCC----------------------------CCCCcHHHHHHHH
Confidence 3456888888764 78999999999985211110 0112334567899
Q ss_pred HHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhh
Q 010133 349 GLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDVV 428 (517)
Q Consensus 349 ~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~ 428 (517)
.||+.|||+..+ .+++||+|||+++.|||||+||||||.+|.++.|+.++|..|++.++..... ..+..+..++..
T Consensus 308 ~LL~~~dg~~~~--~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA~~- 383 (638)
T CHL00176 308 QLLTEMDGFKGN--KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIARR- 383 (638)
T ss_pred HHHhhhccccCC--CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHHhc-
Confidence 999999998654 4589999999999999999999999999999999999999999999876432 123445666665
Q ss_pred CCCCCCHHHHHHHHH
Q 010133 429 GKAEMTPADISEVLI 443 (517)
Q Consensus 429 ~~~~~spadi~~~l~ 443 (517)
+.|||++||..++.
T Consensus 384 -t~G~sgaDL~~lvn 397 (638)
T CHL00176 384 -TPGFSGADLANLLN 397 (638)
T ss_pred -CCCCCHHHHHHHHH
Confidence 78999999998887
No 26
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.97 E-value=5.6e-30 Score=244.47 Aligned_cols=207 Identities=24% Similarity=0.330 Sum_probs=170.3
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecccc---
Q 010133 198 HPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVH--- 274 (517)
Q Consensus 198 ~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~--- 274 (517)
...+|++|+|.++.|..- ..+..|+.+++.|..+. |+++|||||||||||++|+|+||+.+.|++.+..+++.
T Consensus 116 ~~it~ddViGqEeAK~kc-rli~~yLenPe~Fg~WA---PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 116 SDITLDDVIGQEEAKRKC-RLIMEYLENPERFGDWA---PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred ccccHhhhhchHHHHHHH-HHHHHHhhChHHhcccC---cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 456899999999998875 67899999998887663 67999999999999999999999999999999988873
Q ss_pred ---ChHHHHHHHHhcc--CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHH
Q 010133 275 ---NNSELRKLLMKTS--SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSG 349 (517)
Q Consensus 275 ---~~~~L~~lf~~~~--~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 349 (517)
....+++++..+. .|||+||||+|++. + .++-+ .-.+.-...++.
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAia-L-dRryQ----------------------------elRGDVsEiVNA 241 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIA-L-DRRYQ----------------------------ELRGDVSEIVNA 241 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhh-h-hhhHH----------------------------HhcccHHHHHHH
Confidence 2456888887764 89999999999973 1 11110 011234568899
Q ss_pred HHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhhC
Q 010133 350 LLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDVVG 429 (517)
Q Consensus 350 LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~~ 429 (517)
||..|||+.+ +.+++.|++||+|+.||||++. ||...|+|.+|+.++|..|++.|...-....+. .++.++..
T Consensus 242 LLTelDgi~e--neGVvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~-~~~~~~~~-- 314 (368)
T COG1223 242 LLTELDGIKE--NEGVVTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDA-DLRYLAAK-- 314 (368)
T ss_pred HHHhccCccc--CCceEEEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCcccc-CHHHHHHH--
Confidence 9999999975 4669999999999999999999 999999999999999999999998765544322 36666665
Q ss_pred CCCCCHHHHHHHHHHh
Q 010133 430 KAEMTPADISEVLIKN 445 (517)
Q Consensus 430 ~~~~spadi~~~l~~~ 445 (517)
+.|||+.||.+-+++.
T Consensus 315 t~g~SgRdikekvlK~ 330 (368)
T COG1223 315 TKGMSGRDIKEKVLKT 330 (368)
T ss_pred hCCCCchhHHHHHHHH
Confidence 7899999999887754
No 27
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.2e-30 Score=255.97 Aligned_cols=261 Identities=22% Similarity=0.277 Sum_probs=199.1
Q ss_pred CCCcccccCChHHHHHHHHHHHHHHhchhHHHhhC-CCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccC--
Q 010133 199 PSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTG-RAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHN-- 275 (517)
Q Consensus 199 p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G-~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~-- 275 (517)
..+|+++.+.+.+++++.+.+.-.++.+++|...+ ..+++|+|||||||||||++|+|+|.+.+..++.|.++.+.+
T Consensus 88 ~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KW 167 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKW 167 (386)
T ss_pred eeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhh
Confidence 35799999999999999999999999999998443 356789999999999999999999999999999999998843
Q ss_pred ----hHHHHHHHHhcc--CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHH
Q 010133 276 ----NSELRKLLMKTS--SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSG 349 (517)
Q Consensus 276 ----~~~L~~lf~~~~--~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 349 (517)
+.-++.+|.-+. .||||||||||.++..+ . ...++.....-++
T Consensus 168 fgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R---~----------------------------s~dHEa~a~mK~e 216 (386)
T KOG0737|consen 168 FGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR---R----------------------------STDHEATAMMKNE 216 (386)
T ss_pred HHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc---c----------------------------cchHHHHHHHHHH
Confidence 233455555544 89999999999986322 1 1224556778899
Q ss_pred HHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhhC
Q 010133 350 LLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDVVG 429 (517)
Q Consensus 350 LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~~ 429 (517)
|+..+||+.+..+..++|.++||+|..||.|++| ||...++++.|+.++|.+|++-++..+..+ ++.++.+++..
T Consensus 217 FM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~-- 291 (386)
T KOG0737|consen 217 FMALWDGLSSKDSERVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQM-- 291 (386)
T ss_pred HHHHhccccCCCCceEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHHh--
Confidence 9999999998776667888899999999999999 999999999999999999999999877654 35568888887
Q ss_pred CCCCCHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhhhcCCccccCCChhHHHHHHHhhcCCCCccchhhhhc
Q 010133 430 KAEMTPADISEVLIKNKRDKCKAVRELLETLKVKAEKNVKHGGIIVKNSDYEEEEQEKRALESPIEGSDIEDANN 504 (517)
Q Consensus 430 ~~~~spadi~~~l~~~~~~~~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~~~~~~~~~ 504 (517)
+.|||+.||.++|... |+..+.+.++.............+...+ ...+.....+|++.+|+-++.+
T Consensus 292 t~GySGSDLkelC~~A------a~~~ire~~~~~~~~~d~d~~~~d~~~~---~~~~~~~~~r~l~~eDf~~a~~ 357 (386)
T KOG0737|consen 292 TEGYSGSDLKELCRLA------ALRPIRELLVSETGLLDLDKAIADLKPT---QAAASSCLLRPLEQEDFPKAIN 357 (386)
T ss_pred cCCCcHHHHHHHHHHH------hHhHHHHHHHhcccchhhhhhhhhccCC---cccccccccCcccHHHHHHHHH
Confidence 8999999999999765 4444444444430000000000000000 0012334578888888888776
No 28
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.9e-29 Score=272.14 Aligned_cols=214 Identities=29% Similarity=0.409 Sum_probs=182.1
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecccc--
Q 010133 197 KHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVH-- 274 (517)
Q Consensus 197 ~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~-- 274 (517)
.+..+|++++|....|+.+.+.+...+..++.|...|++.++|+|||||||||||+||+|+|++++.+|+.++.+++.
T Consensus 236 ~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk 315 (494)
T COG0464 236 DEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSK 315 (494)
T ss_pred CCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcc
Confidence 345689999999999999999999999999999999999999999999999999999999999999999999988763
Q ss_pred ----ChHHHHHHHHhcc--CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHH
Q 010133 275 ----NNSELRKLLMKTS--SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLS 348 (517)
Q Consensus 275 ----~~~~L~~lf~~~~--~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 348 (517)
++..++.+|..+. .||||||||||+++...+.. .+......++
T Consensus 316 ~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~-------------------------------~~~~~~r~~~ 364 (494)
T COG0464 316 WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPS-------------------------------EDGSGRRVVG 364 (494)
T ss_pred ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCC-------------------------------CchHHHHHHH
Confidence 5678999998875 89999999999986311111 1222368999
Q ss_pred HHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCC-CChHhHHHHHHh
Q 010133 349 GLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESD-LEDETLKELEDV 427 (517)
Q Consensus 349 ~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~-~~~~~~~~i~~l 427 (517)
+||..|||+... .++++|+|||+++.||||++||||||..|++++|+.++|..+++.++...... ..+..+..+++.
T Consensus 365 ~lL~~~d~~e~~--~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~ 442 (494)
T COG0464 365 QLLTELDGIEKA--EGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEI 442 (494)
T ss_pred HHHHHhcCCCcc--CceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHH
Confidence 999999999654 55899999999999999999999999999999999999999999999754432 224456667664
Q ss_pred hCCCCCCHHHHHHHHHHh
Q 010133 428 VGKAEMTPADISEVLIKN 445 (517)
Q Consensus 428 ~~~~~~spadi~~~l~~~ 445 (517)
+.++|++||..++...
T Consensus 443 --t~~~sgadi~~i~~ea 458 (494)
T COG0464 443 --TEGYSGADIAALVREA 458 (494)
T ss_pred --hcCCCHHHHHHHHHHH
Confidence 7889999999988743
No 29
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.96 E-value=3e-29 Score=289.54 Aligned_cols=180 Identities=18% Similarity=0.156 Sum_probs=142.4
Q ss_pred chhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccCh----------------------------
Q 010133 225 GMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNN---------------------------- 276 (517)
Q Consensus 225 ~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~~---------------------------- 276 (517)
++..+.++|..+++|+||+||||||||.||+|+|++.++|++.++++++...
T Consensus 1618 ~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~ 1697 (2281)
T CHL00206 1618 GKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDL 1697 (2281)
T ss_pred CcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhccccccccccccccccccccccccccccc
Confidence 3456788999999999999999999999999999999999999988775310
Q ss_pred ---------------------HHHHHHHHhc--cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCC
Q 010133 277 ---------------------SELRKLLMKT--SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGS 333 (517)
Q Consensus 277 ---------------------~~L~~lf~~~--~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (517)
..++.+|..+ .+||||+|||||++..
T Consensus 1698 ~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~------------------------------- 1746 (2281)
T CHL00206 1698 DTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNV------------------------------- 1746 (2281)
T ss_pred chhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCC-------------------------------
Confidence 1256677765 4899999999999731
Q ss_pred CCCCCCCCchhhHHHHHHHhhcCCccc-CCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCC
Q 010133 334 GSVGGEDGNNSITLSGLLNFTDGLWSC-CGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYE 412 (517)
Q Consensus 334 ~~~~~~~~~~~~~ls~LLn~lDg~~s~-~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~ 412 (517)
......+++.||+.|||.... ...++|||+|||+|+.|||||+||||||++|+++.|+..+|+.++...+...
T Consensus 1747 ------~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tk 1820 (2281)
T CHL00206 1747 ------NESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTR 1820 (2281)
T ss_pred ------CccceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhc
Confidence 011235799999999987432 2356899999999999999999999999999999999999988877543222
Q ss_pred CCCCC--hHhHHHHHHhhCCCCCCHHHHHHHHH
Q 010133 413 ESDLE--DETLKELEDVVGKAEMTPADISEVLI 443 (517)
Q Consensus 413 ~~~~~--~~~~~~i~~l~~~~~~spadi~~~l~ 443 (517)
+..+. ...++.++.. +.|||+|||++++.
T Consensus 1821 g~~L~~~~vdl~~LA~~--T~GfSGADLanLvN 1851 (2281)
T CHL00206 1821 GFHLEKKMFHTNGFGSI--TMGSNARDLVALTN 1851 (2281)
T ss_pred CCCCCcccccHHHHHHh--CCCCCHHHHHHHHH
Confidence 21111 2246677766 89999999999877
No 30
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.96 E-value=9.5e-28 Score=250.52 Aligned_cols=216 Identities=25% Similarity=0.304 Sum_probs=173.9
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecccc-
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVH- 274 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~- 274 (517)
..+..+|++++|.++++++|.+.+..++..++.|..+|+..++|+|||||||||||++|+++|++++.+++.+..+.+.
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 3456689999999999999999999999999999999999999999999999999999999999999999988766542
Q ss_pred -----ChHHHHHHHHhc--cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHH
Q 010133 275 -----NNSELRKLLMKT--SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITL 347 (517)
Q Consensus 275 -----~~~~L~~lf~~~--~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 347 (517)
....++.+|..+ ..|+||||||||.++. .+. ....+.+.....++
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~---~~~-------------------------~~~~~~~~~~~~~l 246 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAA---KRT-------------------------DSGTSGDREVQRTL 246 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhcc---ccc-------------------------cCCCCccHHHHHHH
Confidence 123466667654 4789999999999742 111 00011123356788
Q ss_pred HHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHh
Q 010133 348 SGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDV 427 (517)
Q Consensus 348 s~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l 427 (517)
..+|+.+|++... .+..||+|||+++.+|++++||||||..|+++.|+.++|..|++.++....... +..+..++..
T Consensus 247 ~~ll~~ld~~~~~--~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~-~~~~~~la~~ 323 (364)
T TIGR01242 247 MQLLAELDGFDPR--GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAE-DVDLEAIAKM 323 (364)
T ss_pred HHHHHHhhCCCCC--CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCc-cCCHHHHHHH
Confidence 9999999997443 458899999999999999999999999999999999999999999875543211 2346777776
Q ss_pred hCCCCCCHHHHHHHHHH
Q 010133 428 VGKAEMTPADISEVLIK 444 (517)
Q Consensus 428 ~~~~~~spadi~~~l~~ 444 (517)
+.|++++||..++..
T Consensus 324 --t~g~sg~dl~~l~~~ 338 (364)
T TIGR01242 324 --TEGASGADLKAICTE 338 (364)
T ss_pred --cCCCCHHHHHHHHHH
Confidence 689999999988763
No 31
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.96 E-value=8.7e-28 Score=266.74 Aligned_cols=213 Identities=25% Similarity=0.354 Sum_probs=173.4
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecccc---
Q 010133 198 HPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVH--- 274 (517)
Q Consensus 198 ~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~--- 274 (517)
...+|+++.+.+..++++. ++..++..+..|...|...++|+||+||||||||++++++|++++.+++.++++++.
T Consensus 147 ~~~~~~di~g~~~~~~~l~-~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~ 225 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVA-ELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225 (644)
T ss_pred hhCcHHHHcCHHHHHHHHH-HHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhh
Confidence 3467999999999998875 567778888889999999999999999999999999999999999999999987652
Q ss_pred ---ChHHHHHHHHhcc--CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHH
Q 010133 275 ---NNSELRKLLMKTS--SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSG 349 (517)
Q Consensus 275 ---~~~~L~~lf~~~~--~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 349 (517)
....++.+|..+. .||||||||||++.. ++. . ...+.......+++.
T Consensus 226 ~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~---~r~------------------------~-~~~g~~~~~~~~ln~ 277 (644)
T PRK10733 226 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGR---QRG------------------------A-GLGGGHDEREQTLNQ 277 (644)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhh---ccC------------------------C-CCCCCchHHHHHHHH
Confidence 3566888887764 789999999999842 111 0 001123345679999
Q ss_pred HHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhhC
Q 010133 350 LLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDVVG 429 (517)
Q Consensus 350 LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~~ 429 (517)
||..|||+.++ .++++|+|||+++.|||||+||||||++|.+++|+.++|.+|++.|+....... ...+..+++.
T Consensus 278 lL~~mdg~~~~--~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~-~~d~~~la~~-- 352 (644)
T PRK10733 278 MLVEMDGFEGN--EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAP-DIDAAIIARG-- 352 (644)
T ss_pred HHHhhhcccCC--CCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCC-cCCHHHHHhh--
Confidence 99999999664 458999999999999999999999999999999999999999999987654221 2234556554
Q ss_pred CCCCCHHHHHHHHHH
Q 010133 430 KAEMTPADISEVLIK 444 (517)
Q Consensus 430 ~~~~spadi~~~l~~ 444 (517)
+.|||+|||.+++..
T Consensus 353 t~G~sgadl~~l~~e 367 (644)
T PRK10733 353 TPGFSGADLANLVNE 367 (644)
T ss_pred CCCCCHHHHHHHHHH
Confidence 789999999999873
No 32
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.3e-28 Score=238.68 Aligned_cols=210 Identities=24% Similarity=0.301 Sum_probs=170.0
Q ss_pred CcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccC-----
Q 010133 201 TFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHN----- 275 (517)
Q Consensus 201 ~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~----- 275 (517)
+|+.+.|.-.+..++++-+.-.+.++..+.++|+.+|.|+|||||||||||.+++++|..++.+++.+..+.+.+
T Consensus 130 s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGE 209 (388)
T KOG0651|consen 130 SFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGE 209 (388)
T ss_pred CHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhccc
Confidence 799999999999999999999999999999999999999999999999999999999999999999999888743
Q ss_pred -hHHHHHHHHhcc--CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHH
Q 010133 276 -NSELRKLLMKTS--SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLN 352 (517)
Q Consensus 276 -~~~L~~lf~~~~--~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn 352 (517)
..-+++.|..+. .|||||+||||+.. |++... ....+..-+.||-.|||
T Consensus 210 saRlIRemf~yA~~~~pciifmdeiDAig---GRr~se-------------------------~Ts~dreiqrTLMeLln 261 (388)
T KOG0651|consen 210 SARLIRDMFRYAREVIPCIIFMDEIDAIG---GRRFSE-------------------------GTSSDREIQRTLMELLN 261 (388)
T ss_pred HHHHHHHHHHHHhhhCceEEeehhhhhhc---cEEecc-------------------------ccchhHHHHHHHHHHHH
Confidence 344788887775 78999999999974 333200 01123456789999999
Q ss_pred hhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhhCCCC
Q 010133 353 FTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDVVGKAE 432 (517)
Q Consensus 353 ~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~~~~~ 432 (517)
.|||+... ..+-+|||||+|+.|||||+||||+|+.++.|.|+.+.|..+++.+-...... ..-..+.+..+ ..+
T Consensus 262 qmdgfd~l--~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~-Geid~eaivK~--~d~ 336 (388)
T KOG0651|consen 262 QMDGFDTL--HRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFH-GEIDDEAILKL--VDG 336 (388)
T ss_pred hhccchhc--ccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeecccccccc-ccccHHHHHHH--Hhc
Confidence 99999654 44789999999999999999999999999999999999988777654322210 01124455555 578
Q ss_pred CCHHHHHHHHH
Q 010133 433 MTPADISEVLI 443 (517)
Q Consensus 433 ~spadi~~~l~ 443 (517)
|.++|+...|.
T Consensus 337 f~gad~rn~~t 347 (388)
T KOG0651|consen 337 FNGADLRNVCT 347 (388)
T ss_pred cChHHHhhhcc
Confidence 99999777664
No 33
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.95 E-value=2.1e-27 Score=240.14 Aligned_cols=167 Identities=19% Similarity=0.213 Sum_probs=131.1
Q ss_pred HHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecccc------ChHHHHHHHHhcc-------CCcEEEE
Q 010133 228 FYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVH------NNSELRKLLMKTS-------SKSIIVI 294 (517)
Q Consensus 228 ~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~------~~~~L~~lf~~~~-------~~sII~i 294 (517)
+....|+++|+|+|||||||||||++|+|+|+++|.+++.++..++. ++..++.+|..+. .||||||
T Consensus 139 ~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFI 218 (413)
T PLN00020 139 FLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFI 218 (413)
T ss_pred hhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEE
Confidence 34457899999999999999999999999999999999999999884 4677999998663 6999999
Q ss_pred ccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCC--------c--ccCCCc
Q 010133 295 EDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGL--------W--SCCGSE 364 (517)
Q Consensus 295 DdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~--------~--s~~~~~ 364 (517)
||||+++. ++. ........+.....|||.+|+. | ......
T Consensus 219 DEIDA~~g---~r~---------------------------~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~ 268 (413)
T PLN00020 219 NDLDAGAG---RFG---------------------------TTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPR 268 (413)
T ss_pred ehhhhcCC---CCC---------------------------CCCcchHHHHHHHHHHHHhcCCccccccccccccccCCC
Confidence 99999853 211 0001122455568999998863 4 112345
Q ss_pred eEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhh
Q 010133 365 KIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDVV 428 (517)
Q Consensus 365 ~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~ 428 (517)
++||+|||+|+.|||||+||||||..+ ..|+.++|..|++.++...+ ++...+..|....
T Consensus 269 V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~--l~~~dv~~Lv~~f 328 (413)
T PLN00020 269 VPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDG--VSREDVVKLVDTF 328 (413)
T ss_pred ceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCC--CCHHHHHHHHHcC
Confidence 889999999999999999999999975 58999999999999987754 3455556665554
No 34
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.9e-26 Score=244.60 Aligned_cols=256 Identities=25% Similarity=0.312 Sum_probs=205.9
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccc----
Q 010133 198 HPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEV---- 273 (517)
Q Consensus 198 ~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~---- 273 (517)
++.+ +.+++-..+...+...+...+..+..|...|+++++|+|+|||||||||.+++|+|++.+..++.+++.++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5556 78888888888888888888999999999999999999999999999999999999999999999999987
Q ss_pred --cChHHHHHHHHhcc--C-CcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHH
Q 010133 274 --HNNSELRKLLMKTS--S-KSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLS 348 (517)
Q Consensus 274 --~~~~~L~~lf~~~~--~-~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 348 (517)
.+++.|++.|..+. . |+||||||||.+++ ++. +......++.+
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p---~r~-----------------------------~~~~~e~Rv~s 306 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCP---KRE-----------------------------GADDVESRVVS 306 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCC---ccc-----------------------------ccchHHHHHHH
Confidence 46788999999874 4 99999999999852 221 01124678899
Q ss_pred HHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhh
Q 010133 349 GLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDVV 428 (517)
Q Consensus 349 ~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~ 428 (517)
+|+..|||..+ ...+|+++|||+|+.|||+++| ||||..++++.|+..+|.++++.+....... ++.++..++..
T Consensus 307 qlltL~dg~~~--~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~- 381 (693)
T KOG0730|consen 307 QLLTLLDGLKP--DAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVS- 381 (693)
T ss_pred HHHHHHhhCcC--cCcEEEEEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHH-
Confidence 99999999964 3568999999999999999999 9999999999999999999999987665533 35667777766
Q ss_pred CCCCCCHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHhhhhcCCccccCCChh---HHHHHHHhhcC
Q 010133 429 GKAEMTPADISEVLIKNKRD-KCKAVRELLETLKVKAEKNVKHGGIIVKNSDYE---EEEQEKRALES 492 (517)
Q Consensus 429 ~~~~~spadi~~~l~~~~~~-~~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~r~~~~ 492 (517)
++||++||+..+|..+... -...++.+..++........+..-+..++..|+ +.|+.|+.+.+
T Consensus 382 -thGyvGaDL~~l~~ea~~~~~r~~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~ 448 (693)
T KOG0730|consen 382 -THGYVGADLAALCREASLQATRRTLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRELQQ 448 (693)
T ss_pred -ccchhHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHHHH
Confidence 8999999999998743211 111334455555555555556566678899999 57777776654
No 35
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.94 E-value=1.4e-25 Score=253.80 Aligned_cols=210 Identities=28% Similarity=0.355 Sum_probs=174.0
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecccc---
Q 010133 198 HPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVH--- 274 (517)
Q Consensus 198 ~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~--- 274 (517)
+..+|++|+|.++.++.|.+.+...+..++.|..+|++.++|+|||||||||||+|+++||++++.+++.++++.+.
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 44689999999999999999999999999999999999999999999999999999999999999999999987653
Q ss_pred ---ChHHHHHHHHhc--cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHH
Q 010133 275 ---NNSELRKLLMKT--SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSG 349 (517)
Q Consensus 275 ---~~~~L~~lf~~~--~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 349 (517)
+...++.+|..+ ..|+||||||||+++. .+. ..........++.
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~---~r~----------------------------~~~~~~~~~~~~~ 301 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAP---KRE----------------------------EVTGEVEKRVVAQ 301 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcc---ccc----------------------------CCcchHHHHHHHH
Confidence 245688888765 4789999999999852 111 0011234568899
Q ss_pred HHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhhC
Q 010133 350 LLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDVVG 429 (517)
Q Consensus 350 LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~~ 429 (517)
|++.||++... ..++||+|||+++.|||+|+||||||..|+++.|+.++|..|++.+....... .+..++.+++.
T Consensus 302 Ll~~ld~l~~~--~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~-~d~~l~~la~~-- 376 (733)
T TIGR01243 302 LLTLMDGLKGR--GRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLA-EDVDLDKLAEV-- 376 (733)
T ss_pred HHHHhhccccC--CCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCc-cccCHHHHHHh--
Confidence 99999998553 45788899999999999999999999999999999999999999876543321 13446667766
Q ss_pred CCCCCHHHHHHHHH
Q 010133 430 KAEMTPADISEVLI 443 (517)
Q Consensus 430 ~~~~spadi~~~l~ 443 (517)
+.||+++|+..++.
T Consensus 377 t~G~~gadl~~l~~ 390 (733)
T TIGR01243 377 THGFVGADLAALAK 390 (733)
T ss_pred CCCCCHHHHHHHHH
Confidence 78999999988765
No 36
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=7.5e-26 Score=233.58 Aligned_cols=215 Identities=23% Similarity=0.342 Sum_probs=162.8
Q ss_pred ccCCCCCccccc--CChHHHHHHHHHHHHHHh---chhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCc-eEEE
Q 010133 195 SFKHPSTFDTLA--IDPEKKIEIMEDLKDFAN---GMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYD-IYDL 268 (517)
Q Consensus 195 ~~~~p~~f~tv~--~~~~~k~~i~~~l~~fl~---~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~-i~~l 268 (517)
...+.-.|+++. |.+..-..|.. ..|.. .++.-.++|+++-+|+|||||||||||.+|+.|..-||.. --.|
T Consensus 211 ii~Pdf~Fe~mGIGGLd~EFs~IFR--RAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIV 288 (744)
T KOG0741|consen 211 IINPDFNFESMGIGGLDKEFSDIFR--RAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIV 288 (744)
T ss_pred ccCCCCChhhcccccchHHHHHHHH--HHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCccc
Confidence 344445788864 33333333322 22333 4788899999999999999999999999999999999754 3455
Q ss_pred eeccc------cChHHHHHHHHhcc----------CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccC
Q 010133 269 ELTEV------HNNSELRKLLMKTS----------SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCG 332 (517)
Q Consensus 269 ~l~~~------~~~~~L~~lf~~~~----------~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (517)
|..++ .+++++|+||..+. .-.||++||||++|..+|..
T Consensus 289 NGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~------------------------- 343 (744)
T KOG0741|consen 289 NGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSM------------------------- 343 (744)
T ss_pred CcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCC-------------------------
Confidence 66665 47888999998762 23699999999998433222
Q ss_pred CCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCC
Q 010133 333 SGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYE 412 (517)
Q Consensus 333 ~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~ 412 (517)
.++.+.....+++||.-|||+-+- .++++|+-||++|.+|+||+||||+..++++++|+.+.|.+|++.+-...
T Consensus 344 ----~g~TGVhD~VVNQLLsKmDGVeqL--NNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rM 417 (744)
T KOG0741|consen 344 ----AGSTGVHDTVVNQLLSKMDGVEQL--NNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRM 417 (744)
T ss_pred ----CCCCCccHHHHHHHHHhcccHHhh--hcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhh
Confidence 223445677899999999999654 45999999999999999999999999999999999999998887653221
Q ss_pred ---CCCCChHhHHHHHHhhCCCCCCHHHHHHHHHH
Q 010133 413 ---ESDLEDETLKELEDVVGKAEMTPADISEVLIK 444 (517)
Q Consensus 413 ---~~~~~~~~~~~i~~l~~~~~~spadi~~~l~~ 444 (517)
..-.++.++.+|+.+ +.+||+|+|.+++..
T Consensus 418 re~~~l~~dVdl~elA~l--TKNfSGAEleglVks 450 (744)
T KOG0741|consen 418 RENNKLSADVDLKELAAL--TKNFSGAELEGLVKS 450 (744)
T ss_pred hhcCCCCCCcCHHHHHHH--hcCCchhHHHHHHHH
Confidence 111224568888888 799999999998863
No 37
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.6e-25 Score=248.12 Aligned_cols=211 Identities=24% Similarity=0.272 Sum_probs=175.2
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh-----CCceEEEeecc
Q 010133 198 HPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL-----GYDIYDLELTE 272 (517)
Q Consensus 198 ~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l-----~~~i~~l~l~~ 272 (517)
.-..|++|+|.+..+..+.+-+...+-.++.|.+.++.++||+|||||||||||++|+|+|..+ +..++.-...+
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 3457999999999999999999999999999999999999999999999999999999999988 34444433332
Q ss_pred c------cChHHHHHHHHhcc--CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchh
Q 010133 273 V------HNNSELRKLLMKTS--SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNS 344 (517)
Q Consensus 273 ~------~~~~~L~~lf~~~~--~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (517)
. ..+..|+.+|.++. .|+|||+||||-+....+... ...+.
T Consensus 340 ~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskq-------------------------------Eqih~ 388 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQ-------------------------------EQIHA 388 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchH-------------------------------HHhhh
Confidence 2 35778999998875 799999999998754322211 12345
Q ss_pred hHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHH
Q 010133 345 ITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKEL 424 (517)
Q Consensus 345 ~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i 424 (517)
...+.||..|||+-+. +.+++|++||+++.+||||+||||||+.++|++|+.++|..|+...-..-.......+...|
T Consensus 389 SIvSTLLaLmdGldsR--gqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~l 466 (1080)
T KOG0732|consen 389 SIVSTLLALMDGLDSR--GQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWL 466 (1080)
T ss_pred hHHHHHHHhccCCCCC--CceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHH
Confidence 6789999999999764 66999999999999999999999999999999999999999998776555555556777778
Q ss_pred HHhhCCCCCCHHHHHHHHH
Q 010133 425 EDVVGKAEMTPADISEVLI 443 (517)
Q Consensus 425 ~~l~~~~~~spadi~~~l~ 443 (517)
++. +.||-+||++.+|-
T Consensus 467 a~~--t~gy~gaDlkaLCT 483 (1080)
T KOG0732|consen 467 AEE--TSGYGGADLKALCT 483 (1080)
T ss_pred HHh--ccccchHHHHHHHH
Confidence 776 78999999998876
No 38
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=9.5e-25 Score=225.89 Aligned_cols=221 Identities=22% Similarity=0.278 Sum_probs=187.3
Q ss_pred CCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecccc----
Q 010133 199 PSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVH---- 274 (517)
Q Consensus 199 p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~---- 274 (517)
+..|++++|....|+.+.+.+...+.++..|..+.-| .+|+||.||||||||+|++|||.+.+..|+.++.+++.
T Consensus 149 ~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p-~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~ 227 (428)
T KOG0740|consen 149 NVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREP-VRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYV 227 (428)
T ss_pred cccccCCcchhhHHHHhhhhhhhcccchHhhhccccc-cchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhcc
Confidence 3568899999999999999998888888888876544 56999999999999999999999999999999999884
Q ss_pred --ChHHHHHHHHhc--cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHH
Q 010133 275 --NNSELRKLLMKT--SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGL 350 (517)
Q Consensus 275 --~~~~L~~lf~~~--~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 350 (517)
++.-++.+|.-+ ..|+||||||||.++.-. .+..++.+.+...++
T Consensus 228 Ge~eK~vralf~vAr~~qPsvifidEidslls~R-------------------------------s~~e~e~srr~ktef 276 (428)
T KOG0740|consen 228 GESEKLVRALFKVARSLQPSVIFIDEIDSLLSKR-------------------------------SDNEHESSRRLKTEF 276 (428)
T ss_pred ChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhc-------------------------------CCcccccchhhhhHH
Confidence 234577777655 489999999999987311 112345567888999
Q ss_pred HHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhhCC
Q 010133 351 LNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDVVGK 430 (517)
Q Consensus 351 Ln~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~~~ 430 (517)
|..+||..+.....+++|+|||.|+.+|.|++| ||-..++++.|+.+.|..++++++..+...+.+..++.|+++ +
T Consensus 277 Liq~~~~~s~~~drvlvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~--T 352 (428)
T KOG0740|consen 277 LLQFDGKNSAPDDRVLVIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKV--T 352 (428)
T ss_pred HhhhccccCCCCCeEEEEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHH--h
Confidence 999999988776778888999999999999999 999999999999999999999999888666777888888888 7
Q ss_pred CCCCHHHHHHHHHHhcccHHHHHHH
Q 010133 431 AEMTPADISEVLIKNKRDKCKAVRE 455 (517)
Q Consensus 431 ~~~spadi~~~l~~~~~~~~~al~~ 455 (517)
.|||+.||..+|.....+|...+..
T Consensus 353 egysgsdi~~l~kea~~~p~r~~~~ 377 (428)
T KOG0740|consen 353 EGYSGSDITALCKEAAMGPLRELGG 377 (428)
T ss_pred cCcccccHHHHHHHhhcCchhhccc
Confidence 9999999999998776677666554
No 39
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=99.86 E-value=1.9e-21 Score=164.69 Aligned_cols=96 Identities=40% Similarity=0.664 Sum_probs=91.9
Q ss_pred hCcHHHHHHHHHHHHHHhh-hcCCceEEEEecCCCcCchHHHHHHHHHhccccCCCCceeEEEecCCCCceEEeccCCCc
Q 010133 25 IFPPELRFASLKLFNRIFN-IFSSYCYFDITEIDGVNTNELYNAVQLYLSSSVSISGSRLSLTRALNSSAITFGLSNNDS 103 (517)
Q Consensus 25 ~~p~~~~~~~~~~~~~l~~-~~s~y~~i~i~E~~~~~~~~~y~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 103 (517)
|||++|+.|+.+++++++. +++||+||+|+|.+|++.|++|+++++||++++++.+++|++++.+++++++++|++|++
T Consensus 1 ~~P~~lr~~~~~~~~~~~~~~~s~~~ti~I~E~~g~~~N~ly~a~~~YL~s~~s~~a~rL~~~~~~~~~~~~l~l~~~e~ 80 (98)
T PF14363_consen 1 LLPHELRSYLRSLLRRLFSSRFSPYLTIVIPEFDGLSRNELYDAAQAYLSSKISPSARRLKASKSKNSKNLVLSLDDGEE 80 (98)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCCcEEEEEEeCCCccccHHHHHHHHHHhhccCcccceeeecccCCCCceEEecCCCCE
Confidence 6899999999999988775 999999999999889999999999999999999999999999999999999999999999
Q ss_pred cccccCCceeEEEEEec
Q 010133 104 IYDSFNGVGVLWEHVVS 120 (517)
Q Consensus 104 ~~d~f~g~~~~w~~~~~ 120 (517)
|.|.|+|+++||.++++
T Consensus 81 V~D~F~Gv~v~W~~~~~ 97 (98)
T PF14363_consen 81 VVDVFEGVKVWWSSVCT 97 (98)
T ss_pred EEEEECCEEEEEEEEcc
Confidence 99999999999998865
No 40
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.84 E-value=1.4e-20 Score=166.72 Aligned_cols=123 Identities=34% Similarity=0.540 Sum_probs=100.8
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCCceEEEeecccc------ChHHHHHHHHhc--cC-CcEEEEccchhhhccccccccC
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVH------NNSELRKLLMKT--SS-KSIIVIEDIDCSISLSNRNKRS 310 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~------~~~~L~~lf~~~--~~-~sII~iDdID~~~~~~~~~~~~ 310 (517)
+|||||||||||++|+++|++++.+++.+++..+. ....+..+|..+ .. ||||+|||+|.++... .
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~--~--- 75 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS--Q--- 75 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC--S---
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc--c---
Confidence 68999999999999999999999999999999875 345677888775 34 8999999999985321 0
Q ss_pred CCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceee
Q 010133 311 NGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMH 390 (517)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~ 390 (517)
..........+..|++.+|..... ..++++|+|||.++.+||+|+| |||+..
T Consensus 76 --------------------------~~~~~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~-~rf~~~ 127 (132)
T PF00004_consen 76 --------------------------PSSSSFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLR-SRFDRR 127 (132)
T ss_dssp --------------------------TSSSHHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHS-TTSEEE
T ss_pred --------------------------cccccccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHh-CCCcEE
Confidence 012345677899999999998653 3458999999999999999998 999999
Q ss_pred EeccC
Q 010133 391 IFMSY 395 (517)
Q Consensus 391 I~~~~ 395 (517)
|+++.
T Consensus 128 i~~~~ 132 (132)
T PF00004_consen 128 IEFPL 132 (132)
T ss_dssp EEE-S
T ss_pred EEcCC
Confidence 99874
No 41
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=7e-20 Score=184.71 Aligned_cols=203 Identities=22% Similarity=0.252 Sum_probs=148.7
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecccc---
Q 010133 198 HPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVH--- 274 (517)
Q Consensus 198 ~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~--- 274 (517)
...+|+.|++.+.++..|.+....-.+.+ ....+-|++|||||||||||++|+-||...|+++-.+...++.
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aTaNTK-----~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG 424 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIATANTK-----KHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLG 424 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHhcccc-----cccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccc
Confidence 34469999999999888755444333332 2223346899999999999999999999999999888777763
Q ss_pred --ChHHHHHHHHhc---cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHH
Q 010133 275 --NNSELRKLLMKT---SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSG 349 (517)
Q Consensus 275 --~~~~L~~lf~~~---~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 349 (517)
.-..+.++|.-+ ...-+|||||.|+++. .+.+ ..-++..+..|+.
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLc--eRnk----------------------------tymSEaqRsaLNA 474 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLC--ERNK----------------------------TYMSEAQRSALNA 474 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHH--Hhch----------------------------hhhcHHHHHHHHH
Confidence 346688888654 3567999999999863 1111 1123446677888
Q ss_pred HHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCC---------------
Q 010133 350 LLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEES--------------- 414 (517)
Q Consensus 350 LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~--------------- 414 (517)
||=.. |-. ....+++.+||+|+.||.|+-. |||..|+|++|..++|..|+..|+.....
T Consensus 475 lLfRT-Gdq---SrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lf 548 (630)
T KOG0742|consen 475 LLFRT-GDQ---SRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLF 548 (630)
T ss_pred HHHHh-ccc---ccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHH
Confidence 77554 222 2458889999999999999999 99999999999999999999998743210
Q ss_pred -------C----CChHhHHHHHHhhCCCCCCHHHHHHHHH
Q 010133 415 -------D----LEDETLKELEDVVGKAEMTPADISEVLI 443 (517)
Q Consensus 415 -------~----~~~~~~~~i~~l~~~~~~spadi~~~l~ 443 (517)
. .....+.+.+.. +.|||+.+|+.++.
T Consensus 549 kk~sQ~i~l~~~~t~~~~~EaAkk--TeGfSGREiakLva 586 (630)
T KOG0742|consen 549 KKESQRIKLAGFDTGRKCSEAAKK--TEGFSGREIAKLVA 586 (630)
T ss_pred hhhhheeeeccchHHHHHHHHHHh--ccCCcHHHHHHHHH
Confidence 0 112234444443 89999999998877
No 42
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.81 E-value=9.7e-19 Score=167.08 Aligned_cols=179 Identities=18% Similarity=0.225 Sum_probs=122.4
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccCh
Q 010133 197 KHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNN 276 (517)
Q Consensus 197 ~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~~ 276 (517)
-.|.+|++++|++.++..+.-.+..-..+.+ + -..+||||||||||||||..||++++.++..++...+...
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~-------~-l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~ 89 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKKRGE-------A-LDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKA 89 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS-----------EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SC
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHhcCC-------C-cceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhH
Confidence 4689999999999988775333333322211 1 1269999999999999999999999999999988878778
Q ss_pred HHHHHHHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcC
Q 010133 277 SELRKLLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDG 356 (517)
Q Consensus 277 ~~L~~lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg 356 (517)
.+|..++.....+.|||||||+.+ .+....-|+..|+.
T Consensus 90 ~dl~~il~~l~~~~ILFIDEIHRl------------------------------------------nk~~qe~LlpamEd 127 (233)
T PF05496_consen 90 GDLAAILTNLKEGDILFIDEIHRL------------------------------------------NKAQQEILLPAMED 127 (233)
T ss_dssp HHHHHHHHT--TT-EEEECTCCC--------------------------------------------HHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCcEEEEechhhc------------------------------------------cHHHHHHHHHHhcc
Confidence 889999999889999999999997 33445556666653
Q ss_pred Cc-----ccCC---------CceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHH
Q 010133 357 LW-----SCCG---------SEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLK 422 (517)
Q Consensus 357 ~~-----s~~~---------~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~ 422 (517)
.. .... ..--+|++|+....|.+.|+. ||.....+.+.+.++..+|+++.....+.+++++...
T Consensus 128 ~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~ 205 (233)
T PF05496_consen 128 GKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAE 205 (233)
T ss_dssp SEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHH
T ss_pred CeEEEEeccccccceeeccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 32 1111 124588999999999999999 9999999999999999999998776666666666677
Q ss_pred HHHHh
Q 010133 423 ELEDV 427 (517)
Q Consensus 423 ~i~~l 427 (517)
+|+..
T Consensus 206 ~Ia~r 210 (233)
T PF05496_consen 206 EIARR 210 (233)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 76664
No 43
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.8e-18 Score=170.33 Aligned_cols=177 Identities=20% Similarity=0.303 Sum_probs=130.1
Q ss_pred cccccCChHHHHHHHHHHHHHHhchhHHH-hhCCCCCcceEEeCCCCCcHHHHHHHHHHHhC---------CceEEEeec
Q 010133 202 FDTLAIDPEKKIEIMEDLKDFANGMSFYQ-KTGRAWKRGYLLYGPPGTGKSSMIAAMANYLG---------YDIYDLELT 271 (517)
Q Consensus 202 f~tv~~~~~~k~~i~~~l~~fl~~~~~y~-~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~---------~~i~~l~l~ 271 (517)
|+.++-+...|++++.-+..-+.-.+.-. .-=+.|.|-+|||||||||||||++|+|..+. ..++.+|+.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 46678888999988775544433211111 11267899999999999999999999999882 345667777
Q ss_pred cc------cChHHHHHHHHhcc-------CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCC
Q 010133 272 EV------HNNSELRKLLMKTS-------SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGG 338 (517)
Q Consensus 272 ~~------~~~~~L~~lf~~~~-------~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (517)
++ ++...+.++|.+.. .-..++|||++++...+... .+..
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~---------------------------~S~~ 273 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSA---------------------------SSRN 273 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhh---------------------------hcCC
Confidence 66 23445667776542 22567899999985221111 1122
Q ss_pred CCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhc
Q 010133 339 EDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYL 409 (517)
Q Consensus 339 ~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l 409 (517)
++...-+.++.||..||.+... .+++|.+|+|-.+.||.|+.. |-|-+.++++|+.+++..|++..+
T Consensus 274 EpsDaIRvVNalLTQlDrlK~~--~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~Ilksci 340 (423)
T KOG0744|consen 274 EPSDAIRVVNALLTQLDRLKRY--PNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCI 340 (423)
T ss_pred CCchHHHHHHHHHHHHHHhccC--CCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHH
Confidence 3455678999999999999765 458888899999999999999 999999999999999999998765
No 44
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.77 E-value=1.5e-17 Score=171.45 Aligned_cols=192 Identities=17% Similarity=0.217 Sum_probs=142.2
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccCh
Q 010133 197 KHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNN 276 (517)
Q Consensus 197 ~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~~ 276 (517)
..|.+|++++|.++.++.+...+...... + ...+++|||||||||||++|+++|++++.++..++...+...
T Consensus 19 ~rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~-~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~ 90 (328)
T PRK00080 19 LRPKSLDEFIGQEKVKENLKIFIEAAKKR-------G-EALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKP 90 (328)
T ss_pred cCcCCHHHhcCcHHHHHHHHHHHHHHHhc-------C-CCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccCh
Confidence 35789999999999988876655443322 1 224589999999999999999999999999988877777677
Q ss_pred HHHHHHHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcC
Q 010133 277 SELRKLLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDG 356 (517)
Q Consensus 277 ~~L~~lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg 356 (517)
..+..++.....++||||||||.+.. .....|.+.|+.
T Consensus 91 ~~l~~~l~~l~~~~vl~IDEi~~l~~------------------------------------------~~~e~l~~~~e~ 128 (328)
T PRK00080 91 GDLAAILTNLEEGDVLFIDEIHRLSP------------------------------------------VVEEILYPAMED 128 (328)
T ss_pred HHHHHHHHhcccCCEEEEecHhhcch------------------------------------------HHHHHHHHHHHh
Confidence 78888888888899999999998620 011112233322
Q ss_pred Cc---------cc-----CCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHH
Q 010133 357 LW---------SC-----CGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLK 422 (517)
Q Consensus 357 ~~---------s~-----~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~ 422 (517)
.. +. .-....+|++||.+..++++|++ ||+..+.+++++.+++..+++.........++++.+.
T Consensus 129 ~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~ 206 (328)
T PRK00080 129 FRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGAL 206 (328)
T ss_pred cceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHH
Confidence 10 00 01225789999999999999998 9999999999999999999998877666666677777
Q ss_pred HHHHhhCCCCCCHHHHHHHHH
Q 010133 423 ELEDVVGKAEMTPADISEVLI 443 (517)
Q Consensus 423 ~i~~l~~~~~~spadi~~~l~ 443 (517)
.|.+. .+-+|..+..++.
T Consensus 207 ~ia~~---~~G~pR~a~~~l~ 224 (328)
T PRK00080 207 EIARR---SRGTPRIANRLLR 224 (328)
T ss_pred HHHHH---cCCCchHHHHHHH
Confidence 77665 3345555555554
No 45
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.77 E-value=3e-17 Score=163.85 Aligned_cols=184 Identities=16% Similarity=0.208 Sum_probs=129.3
Q ss_pred cccccCChHHHHHHHHHHHHHHhchhHHHhhCCCC---CcceEEeCCCCCcHHHHHHHHHHHh-------CCceEEEeec
Q 010133 202 FDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAW---KRGYLLYGPPGTGKSSMIAAMANYL-------GYDIYDLELT 271 (517)
Q Consensus 202 f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~---~rg~LL~GpPGTGKTsla~alA~~l-------~~~i~~l~l~ 271 (517)
++.++|.+++|+.|.+. ..+..........|... ..++|||||||||||++|+++|+.+ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~-~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEI-YAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHH-HHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 56789999999998664 45554445555667643 3468999999999999999999875 2356667766
Q ss_pred ccc------ChHHHHHHHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhh
Q 010133 272 EVH------NNSELRKLLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSI 345 (517)
Q Consensus 272 ~~~------~~~~L~~lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (517)
++. ....++.+|..+. ++||||||+|.+.. . +.......
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~-~~VL~IDE~~~L~~----~------------------------------~~~~~~~~ 128 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL-GGVLFIDEAYSLAR----G------------------------------GEKDFGKE 128 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc-CCEEEEechhhhcc----C------------------------------CccchHHH
Confidence 653 2345677776664 58999999999731 0 00112345
Q ss_pred HHHHHHHhhcCCcccCCCceEEEEEeCCCC-----CCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHh
Q 010133 346 TLSGLLNFTDGLWSCCGSEKIFVFTTNHIE-----KLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDET 420 (517)
Q Consensus 346 ~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e-----~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~ 420 (517)
.+..|++.|+... ...++|++++..+ .++|+|.+ ||+.+|+|+.++.+++..+++.++......++++.
T Consensus 129 ~i~~Ll~~~e~~~----~~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a 202 (261)
T TIGR02881 129 AIDTLVKGMEDNR----NEFVLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEA 202 (261)
T ss_pred HHHHHHHHHhccC----CCEEEEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHH
Confidence 6778888888752 2345555553322 36899999 99999999999999999999999876555555665
Q ss_pred HHHHHHh
Q 010133 421 LKELEDV 427 (517)
Q Consensus 421 ~~~i~~l 427 (517)
+..+...
T Consensus 203 ~~~l~~~ 209 (261)
T TIGR02881 203 KWKLREH 209 (261)
T ss_pred HHHHHHH
Confidence 5555443
No 46
>CHL00181 cbbX CbbX; Provisional
Probab=99.75 E-value=4.4e-17 Score=164.45 Aligned_cols=178 Identities=19% Similarity=0.231 Sum_probs=126.8
Q ss_pred ccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCc-c--eEEeCCCCCcHHHHHHHHHHHhC-------CceEEEeecc
Q 010133 203 DTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKR-G--YLLYGPPGTGKSSMIAAMANYLG-------YDIYDLELTE 272 (517)
Q Consensus 203 ~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~r-g--~LL~GpPGTGKTsla~alA~~l~-------~~i~~l~l~~ 272 (517)
++++|.+++|++|.+ +..++.-...+.+.|.+.+. | +||+||||||||++|+++|..+. .+++.++.+.
T Consensus 23 ~~l~Gl~~vK~~i~e-~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIRE-IAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHH-HHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 468999999998877 44556666777888876543 4 79999999999999999999762 2577777665
Q ss_pred cc------ChHHHHHHHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhH
Q 010133 273 VH------NNSELRKLLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSIT 346 (517)
Q Consensus 273 ~~------~~~~L~~lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (517)
+. +......+|..+ .++||||||+|.+.. .+ +........
T Consensus 102 l~~~~~g~~~~~~~~~l~~a-~ggVLfIDE~~~l~~---~~------------------------------~~~~~~~e~ 147 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKA-MGGVLFIDEAYYLYK---PD------------------------------NERDYGSEA 147 (287)
T ss_pred HHHHHhccchHHHHHHHHHc-cCCEEEEEccchhcc---CC------------------------------CccchHHHH
Confidence 42 233455666665 458999999998731 00 011224566
Q ss_pred HHHHHHhhcCCcccCCCceEEEEEeCCCC-----CCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhH
Q 010133 347 LSGLLNFTDGLWSCCGSEKIFVFTTNHIE-----KLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETL 421 (517)
Q Consensus 347 ls~LLn~lDg~~s~~~~~~iiI~TTN~~e-----~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~ 421 (517)
+..|+..|+... ...+||++++... .++|+|.+ ||+.+|+|++++.+++..|+..++......++....
T Consensus 148 ~~~L~~~me~~~----~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~ 221 (287)
T CHL00181 148 IEILLQVMENQR----DDLVVIFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAE 221 (287)
T ss_pred HHHHHHHHhcCC----CCEEEEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHH
Confidence 778888887642 3466667665321 34699999 999999999999999999999998765544444433
No 47
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.75 E-value=4.6e-17 Score=165.85 Aligned_cols=176 Identities=16% Similarity=0.187 Sum_probs=130.3
Q ss_pred CCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccChHHH
Q 010133 200 STFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNNSEL 279 (517)
Q Consensus 200 ~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~~~~L 279 (517)
.+|++++|.++.++.+...+......+ ...++++||||||||||+|++++|++++.++..++.+.......+
T Consensus 1 ~~~~~~iG~~~~~~~l~~~l~~~~~~~--------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l 72 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMRQ--------EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDL 72 (305)
T ss_pred CCHHHHcCHHHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhH
Confidence 368999999999888766554443322 123479999999999999999999999999888877666566677
Q ss_pred HHHHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCc-
Q 010133 280 RKLLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLW- 358 (517)
Q Consensus 280 ~~lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~- 358 (517)
...+.....+.||||||||.+.. .....|++.++...
T Consensus 73 ~~~l~~~~~~~vl~iDEi~~l~~------------------------------------------~~~e~l~~~~~~~~~ 110 (305)
T TIGR00635 73 AAILTNLEEGDVLFIDEIHRLSP------------------------------------------AVEELLYPAMEDFRL 110 (305)
T ss_pred HHHHHhcccCCEEEEehHhhhCH------------------------------------------HHHHHhhHHHhhhhe
Confidence 77787778889999999998721 01122333332211
Q ss_pred -------------ccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHH
Q 010133 359 -------------SCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELE 425 (517)
Q Consensus 359 -------------s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~ 425 (517)
.......++|++||++..++++|+. ||...+.+++++.+++..+++...+.....++++.++.|.
T Consensus 111 ~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia 188 (305)
T TIGR00635 111 DIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIA 188 (305)
T ss_pred eeeeccCccccceeecCCCeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHH
Confidence 0011236788999999999999999 9999999999999999999988776555556666666666
Q ss_pred Hh
Q 010133 426 DV 427 (517)
Q Consensus 426 ~l 427 (517)
+.
T Consensus 189 ~~ 190 (305)
T TIGR00635 189 RR 190 (305)
T ss_pred HH
Confidence 65
No 48
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.74 E-value=6.2e-17 Score=163.32 Aligned_cols=181 Identities=16% Similarity=0.216 Sum_probs=130.8
Q ss_pred cccCChHHHHHHHHHHHHHHhchhHHHhhCCCC---CcceEEeCCCCCcHHHHHHHHHHHhC-------CceEEEeeccc
Q 010133 204 TLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAW---KRGYLLYGPPGTGKSSMIAAMANYLG-------YDIYDLELTEV 273 (517)
Q Consensus 204 tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~---~rg~LL~GpPGTGKTsla~alA~~l~-------~~i~~l~l~~~ 273 (517)
.++|.+++|++|.+ +..++..+..+.+.|++. ..++||+||||||||++|+++|..+. .+++.++++++
T Consensus 23 ~l~Gl~~vk~~i~e-~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIRE-IAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHH-HHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 58899999999866 555577777888888764 34899999999999999999998873 26888877654
Q ss_pred c------ChHHHHHHHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHH
Q 010133 274 H------NNSELRKLLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITL 347 (517)
Q Consensus 274 ~------~~~~L~~lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 347 (517)
. +...++.+|.++ .++||||||||.+.. .+ .........+
T Consensus 102 ~~~~~g~~~~~~~~~~~~a-~~gvL~iDEi~~L~~---~~------------------------------~~~~~~~~~~ 147 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRA-MGGVLFIDEAYYLYR---PD------------------------------NERDYGQEAI 147 (284)
T ss_pred hHhhcccchHHHHHHHHHc-cCcEEEEechhhhcc---CC------------------------------CccchHHHHH
Confidence 2 234556677765 459999999998731 00 0112245567
Q ss_pred HHHHHhhcCCcccCCCceEEEEEeCC--CC---CCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHH
Q 010133 348 SGLLNFTDGLWSCCGSEKIFVFTTNH--IE---KLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLK 422 (517)
Q Consensus 348 s~LLn~lDg~~s~~~~~~iiI~TTN~--~e---~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~ 422 (517)
..|+..|+.. ..+.+||++++. .+ .++|+|.+ ||+.+|+|++++.+++..|++.++......++.+...
T Consensus 148 ~~Ll~~le~~----~~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~ 221 (284)
T TIGR02880 148 EILLQVMENQ----RDDLVVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEE 221 (284)
T ss_pred HHHHHHHhcC----CCCEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHH
Confidence 7888888754 234667776653 23 24899999 9999999999999999999999987655444444444
Q ss_pred HHH
Q 010133 423 ELE 425 (517)
Q Consensus 423 ~i~ 425 (517)
.+.
T Consensus 222 ~L~ 224 (284)
T TIGR02880 222 AFA 224 (284)
T ss_pred HHH
Confidence 433
No 49
>PRK04195 replication factor C large subunit; Provisional
Probab=99.70 E-value=5.4e-16 Score=167.81 Aligned_cols=180 Identities=22% Similarity=0.407 Sum_probs=134.2
Q ss_pred CceecccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEe
Q 010133 190 PWESVSFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLE 269 (517)
Q Consensus 190 ~w~~~~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~ 269 (517)
.| +....|.+|++|+|.++.++.+.+.+..+.++ .+ ++++|||||||||||++|+++|++++++++.++
T Consensus 3 ~W--~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g--------~~-~~~lLL~GppG~GKTtla~ala~el~~~~ieln 71 (482)
T PRK04195 3 PW--VEKYRPKTLSDVVGNEKAKEQLREWIESWLKG--------KP-KKALLLYGPPGVGKTSLAHALANDYGWEVIELN 71 (482)
T ss_pred Cc--hhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcC--------CC-CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEc
Confidence 46 56678999999999999999888887777642 22 568999999999999999999999999999999
Q ss_pred eccccChHHHHHHHHhc--------cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCC
Q 010133 270 LTEVHNNSELRKLLMKT--------SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDG 341 (517)
Q Consensus 270 l~~~~~~~~L~~lf~~~--------~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (517)
.++..+...++.+.... ..+.||+|||+|.+.. .
T Consensus 72 asd~r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~---~----------------------------------- 113 (482)
T PRK04195 72 ASDQRTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHG---N----------------------------------- 113 (482)
T ss_pred ccccccHHHHHHHHHHhhccCcccCCCCeEEEEecCccccc---c-----------------------------------
Confidence 98876666666654432 1478999999998721 0
Q ss_pred chhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCCh-hhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHh
Q 010133 342 NNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDP-ALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDET 420 (517)
Q Consensus 342 ~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~-ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~ 420 (517)
.....+..|++.++.. ...+|++||.+..+++ .|.+ | ...|.|++|+.+++..+++..+...+..++...
T Consensus 114 ~d~~~~~aL~~~l~~~------~~~iIli~n~~~~~~~k~Lrs--r-~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~ea 184 (482)
T PRK04195 114 EDRGGARAILELIKKA------KQPIILTANDPYDPSLRELRN--A-CLMIEFKRLSTRSIVPVLKRICRKEGIECDDEA 184 (482)
T ss_pred cchhHHHHHHHHHHcC------CCCEEEeccCccccchhhHhc--c-ceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 0112355666666632 2346778898888887 5554 4 468999999999999999888766665555555
Q ss_pred HHHHHHh
Q 010133 421 LKELEDV 427 (517)
Q Consensus 421 ~~~i~~l 427 (517)
+..|.+.
T Consensus 185 L~~Ia~~ 191 (482)
T PRK04195 185 LKEIAER 191 (482)
T ss_pred HHHHHHH
Confidence 5555543
No 50
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.69 E-value=1.6e-15 Score=146.80 Aligned_cols=179 Identities=21% Similarity=0.309 Sum_probs=145.0
Q ss_pred CceecccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceE
Q 010133 190 PWESVSFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIY 266 (517)
Q Consensus 190 ~w~~~~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~ 266 (517)
....+....|..+++|+|.+.+|+.|++-...|+... +..++||||++||||||+++|+.+++ |+.++
T Consensus 14 ~l~~i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~---------pannvLL~G~rGtGKSSlVkall~~y~~~GLRlI 84 (249)
T PF05673_consen 14 YLEPIKHPDPIRLDDLIGIERQKEALIENTEQFLQGL---------PANNVLLWGARGTGKSSLVKALLNEYADQGLRLI 84 (249)
T ss_pred cEEecCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCC---------CCcceEEecCCCCCHHHHHHHHHHHHhhcCceEE
Confidence 3555666677899999999999999999999999863 24589999999999999999999877 77888
Q ss_pred EEeeccccChHHHHHHHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhH
Q 010133 267 DLELTEVHNNSELRKLLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSIT 346 (517)
Q Consensus 267 ~l~l~~~~~~~~L~~lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (517)
.|+-..+..-..|...+...+.+-|||+||+-- + .....
T Consensus 85 ev~k~~L~~l~~l~~~l~~~~~kFIlf~DDLsF--e---------------------------------------~~d~~ 123 (249)
T PF05673_consen 85 EVSKEDLGDLPELLDLLRDRPYKFILFCDDLSF--E---------------------------------------EGDTE 123 (249)
T ss_pred EECHHHhccHHHHHHHHhcCCCCEEEEecCCCC--C---------------------------------------CCcHH
Confidence 888888878788888888888999999999752 0 12234
Q ss_pred HHHHHHhhcCCcccCCCceEEEEEeCCCCCCCh-----------------------hhhccCCceeeEeccCCCHHHHHH
Q 010133 347 LSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDP-----------------------ALLRSGRMDMHIFMSYCSYPALLI 403 (517)
Q Consensus 347 ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~-----------------------ALlRpGR~d~~I~~~~p~~e~~~~ 403 (517)
...|-..|||--...+.+++|.+|+|+...+.+ +|-- ||...|.|.+|+.++..+
T Consensus 124 yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsD--RFGL~l~F~~~~q~~YL~ 201 (249)
T PF05673_consen 124 YKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSD--RFGLWLSFYPPDQEEYLA 201 (249)
T ss_pred HHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHH--hCCcEEEecCCCHHHHHH
Confidence 577888889887777788999999997544322 2333 999999999999999999
Q ss_pred HHHHhcCCCCCCCChHh
Q 010133 404 LLKNYLGYEESDLEDET 420 (517)
Q Consensus 404 l~~~~l~~~~~~~~~~~ 420 (517)
|+++|+...+...+++.
T Consensus 202 IV~~~~~~~g~~~~~e~ 218 (249)
T PF05673_consen 202 IVRHYAERYGLELDEEE 218 (249)
T ss_pred HHHHHHHHcCCCCCHHH
Confidence 99999977776665533
No 51
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.68 E-value=1.3e-15 Score=173.25 Aligned_cols=158 Identities=27% Similarity=0.272 Sum_probs=113.1
Q ss_pred cccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccCh-------
Q 010133 204 TLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNN------- 276 (517)
Q Consensus 204 tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~~------- 276 (517)
+++|.++.|+.|.+.+...... +......+||+||||||||++|++||+.++.+++.++++.+.+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 3678888888877654433221 22223479999999999999999999999999999987765332
Q ss_pred --------HHHHHHHHhcc-CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHH
Q 010133 277 --------SELRKLLMKTS-SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITL 347 (517)
Q Consensus 277 --------~~L~~lf~~~~-~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 347 (517)
..+.+.|..+. .+.||||||||.+.. .. .....
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~---~~-----------------------------------~~~~~ 435 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGS---SF-----------------------------------RGDPA 435 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCCEEEEechhhcCC---cc-----------------------------------CCCHH
Confidence 23445555443 446999999999731 00 00124
Q ss_pred HHHHHhhcCC----ccc-------CCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhc
Q 010133 348 SGLLNFTDGL----WSC-------CGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYL 409 (517)
Q Consensus 348 s~LLn~lDg~----~s~-------~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l 409 (517)
+.||..||.. ... .-.+.++|+|||.++.|||+|++ ||+ .|+|+.++.+++..|++.|+
T Consensus 436 ~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 436 SALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred HHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 5677776631 100 01357889999999999999999 995 78999999999999999886
No 52
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.9e-15 Score=162.95 Aligned_cols=239 Identities=20% Similarity=0.241 Sum_probs=168.8
Q ss_pred HHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecccc------ChHHHHHHHHhcc--CC
Q 010133 218 DLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVH------NNSELRKLLMKTS--SK 289 (517)
Q Consensus 218 ~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~------~~~~L~~lf~~~~--~~ 289 (517)
.+..++..+..-...++...-.+||||+||||||++++++|.++|.+++.++|.++. ++..+...|..+. +|
T Consensus 412 ~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~p 491 (953)
T KOG0736|consen 412 ELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSP 491 (953)
T ss_pred HHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCc
Confidence 566666666555555666666899999999999999999999999999999999984 4567888888875 89
Q ss_pred cEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEE
Q 010133 290 SIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVF 369 (517)
Q Consensus 290 sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~ 369 (517)
+||||-++|.+. ..+ .++.+-.-...+..++. +|-.... ....|+|+
T Consensus 492 avifl~~~dvl~---id~----------------------------dgged~rl~~~i~~~ls-~e~~~~~-~~~~ivv~ 538 (953)
T KOG0736|consen 492 AVLFLRNLDVLG---IDQ----------------------------DGGEDARLLKVIRHLLS-NEDFKFS-CPPVIVVA 538 (953)
T ss_pred eEEEEeccceee---ecC----------------------------CCchhHHHHHHHHHHHh-cccccCC-CCceEEEE
Confidence 999999999862 000 00111111223333333 3333322 34689999
Q ss_pred EeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhhCCCCCCHHHHHHHHHHhccc-
Q 010133 370 TTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDVVGKAEMTPADISEVLIKNKRD- 448 (517)
Q Consensus 370 TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~~~~~~spadi~~~l~~~~~~- 448 (517)
||+..+.|++.+.+ -|-..|.++.|+.++|.++++.|+.....+- +.....++.. +.+||.+++..++-....+
T Consensus 539 t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~-~v~~k~~a~~--t~gfs~~~L~~l~~~~s~~~ 613 (953)
T KOG0736|consen 539 TTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLNQ-DVNLKQLARK--TSGFSFGDLEALVAHSSLAA 613 (953)
T ss_pred eccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccch-HHHHHHHHHh--cCCCCHHHHHHHhcCchHHH
Confidence 99999999999998 8888999999999999999999986554221 2233444444 7899999998776522101
Q ss_pred -------------------------HHHHHHHHHHHHHHHHHhhhhcCCcc-ccCCChh---HHHHHHHhhcCCC
Q 010133 449 -------------------------KCKAVRELLETLKVKAEKNVKHGGII-VKNSDYE---EEEQEKRALESPI 494 (517)
Q Consensus 449 -------------------------~~~al~~l~~~l~~~~~~~~~~~~~~-~~~~~~~---~~~~~~r~~~~~l 494 (517)
+-..-+++.+++.+.+.+.....+.. +|++.|+ +.++.|..++.-+
T Consensus 614 ~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~eIldTI 688 (953)
T KOG0736|consen 614 KTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTEILDTI 688 (953)
T ss_pred HHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCccchhcccCHHHHHHHHHHHh
Confidence 22344666677777776666666654 8999999 7777777665533
No 53
>PLN03025 replication factor C subunit; Provisional
Probab=99.66 E-value=1.9e-15 Score=155.24 Aligned_cols=171 Identities=19% Similarity=0.223 Sum_probs=117.4
Q ss_pred cccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhC-----CceEEE
Q 010133 194 VSFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLG-----YDIYDL 268 (517)
Q Consensus 194 ~~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~-----~~i~~l 268 (517)
+....|.+|++++++++..+.+ ..++... .. .++|||||||||||++|.++|+++. ..++.+
T Consensus 4 ~~kyrP~~l~~~~g~~~~~~~L----~~~~~~~------~~---~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~el 70 (319)
T PLN03025 4 VEKYRPTKLDDIVGNEDAVSRL----QVIARDG------NM---PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLEL 70 (319)
T ss_pred hhhcCCCCHHHhcCcHHHHHHH----HHHHhcC------CC---ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeee
Confidence 4567899999999998876554 3333331 11 2599999999999999999999982 235556
Q ss_pred eeccccChHHHHHHHH---hc------cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCC
Q 010133 269 ELTEVHNNSELRKLLM---KT------SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGE 339 (517)
Q Consensus 269 ~l~~~~~~~~L~~lf~---~~------~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (517)
+.++..+...++..+. .. ..+.||+|||+|.+.
T Consensus 71 n~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt-------------------------------------- 112 (319)
T PLN03025 71 NASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT-------------------------------------- 112 (319)
T ss_pred cccccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcC--------------------------------------
Confidence 6655444444554432 22 235799999999872
Q ss_pred CCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChH
Q 010133 340 DGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDE 419 (517)
Q Consensus 340 ~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~ 419 (517)
......|+..|+-.. ....+|++||....+.++|.. |+ ..+.|++|+.++....++..+..++..++++
T Consensus 113 ----~~aq~aL~~~lE~~~----~~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~ 181 (319)
T PLN03025 113 ----SGAQQALRRTMEIYS----NTTRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPE 181 (319)
T ss_pred ----HHHHHHHHHHHhccc----CCceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 123455666666432 224577889999999999998 76 5789999999998888887766555444444
Q ss_pred hHHHHHH
Q 010133 420 TLKELED 426 (517)
Q Consensus 420 ~~~~i~~ 426 (517)
.+..+..
T Consensus 182 ~l~~i~~ 188 (319)
T PLN03025 182 GLEAIIF 188 (319)
T ss_pred HHHHHHH
Confidence 4444433
No 54
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=2.4e-15 Score=161.26 Aligned_cols=169 Identities=21% Similarity=0.331 Sum_probs=120.8
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC------------
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY------------ 263 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~------------ 263 (517)
...|.+|++++|.+..++.+. ..+... ..+.+|||||||||||||+|+++|+.++.
T Consensus 7 kyRP~~~~divGq~~i~~~L~----~~i~~~--------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c 74 (472)
T PRK14962 7 KYRPKTFSEVVGQDHVKKLII----NALKKN--------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNEC 74 (472)
T ss_pred HHCCCCHHHccCcHHHHHHHH----HHHHcC--------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCccc
Confidence 457999999999988755543 334332 12346999999999999999999999875
Q ss_pred ------------ceEEEeeccccChHHHHHHHHhc------cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCC
Q 010133 264 ------------DIYDLELTEVHNNSELRKLLMKT------SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYY 325 (517)
Q Consensus 264 ------------~i~~l~l~~~~~~~~L~~lf~~~------~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (517)
+++.++.+.-..-..++++.... ..+.||+|||+|.+.
T Consensus 75 ~~c~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt------------------------ 130 (472)
T PRK14962 75 RACRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT------------------------ 130 (472)
T ss_pred HHHHHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH------------------------
Confidence 56667665433445566655433 245799999999871
Q ss_pred CcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHH
Q 010133 326 EPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILL 405 (517)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~ 405 (517)
...+..||..++.. ++..++|++||.++.++++|+. |+ ..+.|.+++.++...++
T Consensus 131 ------------------~~a~~~LLk~LE~p----~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L 185 (472)
T PRK14962 131 ------------------KEAFNALLKTLEEP----PSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRL 185 (472)
T ss_pred ------------------HHHHHHHHHHHHhC----CCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHH
Confidence 23467788888764 2346777788888899999998 87 47999999999988888
Q ss_pred HHhcCCCCCCCChHhHHHHH
Q 010133 406 KNYLGYEESDLEDETLKELE 425 (517)
Q Consensus 406 ~~~l~~~~~~~~~~~~~~i~ 425 (517)
+..+...+..++++.++.|.
T Consensus 186 ~~i~~~egi~i~~eal~~Ia 205 (472)
T PRK14962 186 QEVAEAEGIEIDREALSFIA 205 (472)
T ss_pred HHHHHHcCCCCCHHHHHHHH
Confidence 87765444444444333333
No 55
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.66 E-value=1.3e-15 Score=172.33 Aligned_cols=157 Identities=20% Similarity=0.244 Sum_probs=114.7
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh----------CCceEE
Q 010133 198 HPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL----------GYDIYD 267 (517)
Q Consensus 198 ~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l----------~~~i~~ 267 (517)
.|..++.++|.++....+++.|... -+.++||+||||||||++++++|..+ +..++.
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~~~-------------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLCRR-------------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHhcC-------------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 5678999999988877665444222 23589999999999999999999988 788999
Q ss_pred EeeccccC--------hHHHHHHHHhcc--CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCC
Q 010133 268 LELTEVHN--------NSELRKLLMKTS--SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVG 337 (517)
Q Consensus 268 l~l~~~~~--------~~~L~~lf~~~~--~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (517)
++++.+.. +..++++|..+. .++||||||||.++.....
T Consensus 244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~------------------------------- 292 (731)
T TIGR02639 244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGAT------------------------------- 292 (731)
T ss_pred ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCC-------------------------------
Confidence 99887642 357888888753 5899999999998521000
Q ss_pred CCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCC-----CCChhhhccCCceeeEeccCCCHHHHHHHHHHhc
Q 010133 338 GEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIE-----KLDPALLRSGRMDMHIFMSYCSYPALLILLKNYL 409 (517)
Q Consensus 338 ~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e-----~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l 409 (517)
.+......+-|+..+. .++..+|++||..+ .+|+||.| ||. .|+++.|+.+++..|++...
T Consensus 293 --~~~~~~~~~~L~~~l~------~g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 293 --SGGSMDASNLLKPALS------SGKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred --CCccHHHHHHHHHHHh------CCCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHH
Confidence 0001111223334432 24578888888643 46999999 996 79999999999999998654
No 56
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=2e-15 Score=159.93 Aligned_cols=170 Identities=15% Similarity=0.281 Sum_probs=122.9
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC------------
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY------------ 263 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~------------ 263 (517)
...|.+|++|+|.+.....|...+ ... ..+..||||||||||||++|+++|+.++.
T Consensus 11 KyRP~~f~dvVGQe~iv~~L~~~i----~~~--------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C 78 (484)
T PRK14956 11 KYRPQFFRDVIHQDLAIGALQNAL----KSG--------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC 78 (484)
T ss_pred HhCCCCHHHHhChHHHHHHHHHHH----HcC--------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC
Confidence 468999999999988876654433 221 12235999999999999999999999976
Q ss_pred ------------ceEEEeeccccChHHHHHHHHhc------cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCC
Q 010133 264 ------------DIYDLELTEVHNNSELRKLLMKT------SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYY 325 (517)
Q Consensus 264 ------------~i~~l~l~~~~~~~~L~~lf~~~------~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (517)
+++.++...-.+.+.++.+.... ....|+||||+|.+
T Consensus 79 ~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~L------------------------- 133 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHML------------------------- 133 (484)
T ss_pred cHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhc-------------------------
Confidence 34445543323344556554432 24569999999987
Q ss_pred CcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHH
Q 010133 326 EPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILL 405 (517)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~ 405 (517)
....++.||..|+.- ....++|++|+.++.|.++++. |+ .++.|..++.++....+
T Consensus 134 -----------------s~~A~NALLKtLEEP----p~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L 189 (484)
T PRK14956 134 -----------------TDQSFNALLKTLEEP----PAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYS 189 (484)
T ss_pred -----------------CHHHHHHHHHHhhcC----CCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHH
Confidence 234678888888763 3457888999999999999999 88 57899999998888888
Q ss_pred HHhcCCCCCCCChHhHHHHHH
Q 010133 406 KNYLGYEESDLEDETLKELED 426 (517)
Q Consensus 406 ~~~l~~~~~~~~~~~~~~i~~ 426 (517)
+..+..++..++++.+..|++
T Consensus 190 ~~i~~~Egi~~e~eAL~~Ia~ 210 (484)
T PRK14956 190 EKLCKIENVQYDQEGLFWIAK 210 (484)
T ss_pred HHHHHHcCCCCCHHHHHHHHH
Confidence 887766655555554444443
No 57
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.66 E-value=3.3e-15 Score=145.67 Aligned_cols=178 Identities=17% Similarity=0.208 Sum_probs=135.7
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccChH
Q 010133 198 HPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNNS 277 (517)
Q Consensus 198 ~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~~~ 277 (517)
.|.+|++.+|.+++|+.+-=.+..-..+.+ .--.+|||||||.||||||.-||+++|.++-..+...+....
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r~e--------~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~g 92 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKRGE--------ALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPG 92 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhcCC--------CcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChh
Confidence 588999999999888776333333222221 123799999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCC
Q 010133 278 ELRKLLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGL 357 (517)
Q Consensus 278 ~L~~lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~ 357 (517)
+|..++.......|+|||||+++-. ..-.-|--+|+.+
T Consensus 93 DlaaiLt~Le~~DVLFIDEIHrl~~------------------------------------------~vEE~LYpaMEDf 130 (332)
T COG2255 93 DLAAILTNLEEGDVLFIDEIHRLSP------------------------------------------AVEEVLYPAMEDF 130 (332)
T ss_pred hHHHHHhcCCcCCeEEEehhhhcCh------------------------------------------hHHHHhhhhhhhe
Confidence 9999999999999999999999721 0111111222211
Q ss_pred --------cccCC------CceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHH
Q 010133 358 --------WSCCG------SEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKE 423 (517)
Q Consensus 358 --------~s~~~------~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~ 423 (517)
.++.. ..--+|++|.+...|...|.. ||.....+.+.+.++...|++......+.+++++...+
T Consensus 131 ~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~e 208 (332)
T COG2255 131 RLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALE 208 (332)
T ss_pred eEEEEEccCCccceEeccCCCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHH
Confidence 11100 124688999999999999999 99999999999999999999988766666666777777
Q ss_pred HHHh
Q 010133 424 LEDV 427 (517)
Q Consensus 424 i~~l 427 (517)
|+..
T Consensus 209 IA~r 212 (332)
T COG2255 209 IARR 212 (332)
T ss_pred HHHh
Confidence 7775
No 58
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=1.5e-15 Score=164.70 Aligned_cols=171 Identities=19% Similarity=0.276 Sum_probs=128.0
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC------------
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY------------ 263 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~------------ 263 (517)
..+|.+|++|+|.+..++.|.+.+ ... ..+..|||+||+|||||++++++|+.+++
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al----~~g--------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~ 76 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHAL----EQQ--------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ 76 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHH----HhC--------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence 458999999999998877665433 321 12347999999999999999999999976
Q ss_pred -----------------ceEEEeeccccChHHHHHHHHhc------cCCcEEEEccchhhhccccccccCCCCCCCCCCC
Q 010133 264 -----------------DIYDLELTEVHNNSELRKLLMKT------SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCG 320 (517)
Q Consensus 264 -----------------~i~~l~l~~~~~~~~L~~lf~~~------~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~ 320 (517)
+++.++..+-.+-+++++++... ....|+||||+|.+
T Consensus 77 PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~L-------------------- 136 (700)
T PRK12323 77 PCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML-------------------- 136 (700)
T ss_pred CCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhc--------------------
Confidence 45555554433456677776543 24579999999987
Q ss_pred CCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHH
Q 010133 321 NGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPA 400 (517)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~ 400 (517)
+....+.||..|+.- .+..++|++||.+.+|.+.++. |+ .++.|..++.++
T Consensus 137 ----------------------s~~AaNALLKTLEEP----P~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~ee 187 (700)
T PRK12323 137 ----------------------TNHAFNAMLKTLEEP----PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGH 187 (700)
T ss_pred ----------------------CHHHHHHHHHhhccC----CCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHH
Confidence 234577899888764 3457899999999999999998 88 789999999999
Q ss_pred HHHHHHHhcCCCCCCCChHhHHHHHHh
Q 010133 401 LLILLKNYLGYEESDLEDETLKELEDV 427 (517)
Q Consensus 401 ~~~l~~~~l~~~~~~~~~~~~~~i~~l 427 (517)
....++.++..++...+.+.+..|.+.
T Consensus 188 i~~~L~~Il~~Egi~~d~eAL~~IA~~ 214 (700)
T PRK12323 188 IVSHLDAILGEEGIAHEVNALRLLAQA 214 (700)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 998888877665555555545554443
No 59
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=3.6e-15 Score=159.57 Aligned_cols=199 Identities=20% Similarity=0.264 Sum_probs=138.9
Q ss_pred ccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhC----CceEEEeeccccCh--
Q 010133 203 DTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLG----YDIYDLELTEVHNN-- 276 (517)
Q Consensus 203 ~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~----~~i~~l~l~~~~~~-- 276 (517)
.+++..+..|++..+ .++.. +.-+..+||+||+|||||.|++++++++. +++..++|+.+...
T Consensus 408 ~d~i~~~s~kke~~n---~~~sp--------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 408 HDFIQVPSYKKENAN---QELSP--------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred Cceeecchhhhhhhh---hhccc--------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH
Confidence 566666777766654 22221 33345899999999999999999999984 44557799888432
Q ss_pred HH----HHHHHHhc--cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHH
Q 010133 277 SE----LRKLLMKT--SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGL 350 (517)
Q Consensus 277 ~~----L~~lf~~~--~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 350 (517)
.. |+..|.++ ..|+||+|||+||++.. .+..++..+.....+..+
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~-----------------------------s~~e~~q~~~~~~rla~f 527 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASA-----------------------------SSNENGQDGVVSERLAAF 527 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhcc-----------------------------CcccCCcchHHHHHHHHH
Confidence 22 44445554 48999999999999630 011112233344556666
Q ss_pred HHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhhCC
Q 010133 351 LNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDVVGK 430 (517)
Q Consensus 351 Ln~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~~~ 430 (517)
||.+-......+..+.+|+|.+..+.|.|-|..|++|+.++.++.|...+|..|++..+.....+....+++.++.. +
T Consensus 528 lnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~--T 605 (952)
T KOG0735|consen 528 LNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVK--T 605 (952)
T ss_pred HHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHh--c
Confidence 65543332223334578889999999999999999999999999999999999999988665433334445555544 8
Q ss_pred CCCCHHHHHHHHH
Q 010133 431 AEMTPADISEVLI 443 (517)
Q Consensus 431 ~~~spadi~~~l~ 443 (517)
.||.+.|+.-++.
T Consensus 606 EGy~~~DL~ifVe 618 (952)
T KOG0735|consen 606 EGYLATDLVIFVE 618 (952)
T ss_pred CCccchhHHHHHH
Confidence 9999999876654
No 60
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.66 E-value=1.1e-14 Score=149.22 Aligned_cols=157 Identities=20% Similarity=0.225 Sum_probs=112.9
Q ss_pred CCceecccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEE
Q 010133 189 HPWESVSFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDL 268 (517)
Q Consensus 189 ~~w~~~~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l 268 (517)
..| +....|.+|+++++.+..++.+...+. . | ..+..+|||||||+|||++++++|++++.+++.+
T Consensus 9 ~~w--~~kyrP~~~~~~~~~~~~~~~l~~~~~----~-------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i 74 (316)
T PHA02544 9 FMW--EQKYRPSTIDECILPAADKETFKSIVK----K-------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFV 74 (316)
T ss_pred Ccc--eeccCCCcHHHhcCcHHHHHHHHHHHh----c-------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEe
Confidence 356 456789999999999988776655433 2 1 1234677799999999999999999999999999
Q ss_pred eeccccChHHHHHHH----Hhc---cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCC
Q 010133 269 ELTEVHNNSELRKLL----MKT---SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDG 341 (517)
Q Consensus 269 ~l~~~~~~~~L~~lf----~~~---~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (517)
+++. .....++..+ ... ..+.||+|||+|.+- ..
T Consensus 75 ~~~~-~~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~--------------------------------------~~ 115 (316)
T PHA02544 75 NGSD-CRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG--------------------------------------LA 115 (316)
T ss_pred ccCc-ccHHHHHHHHHHHHHhhcccCCCeEEEEECccccc--------------------------------------CH
Confidence 9987 2333333322 222 357899999999751 00
Q ss_pred chhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHh
Q 010133 342 NNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNY 408 (517)
Q Consensus 342 ~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~ 408 (517)
.....|.+.++... ....+|+|||.+..++++|++ |+. .+.++.|+.+++..+++.+
T Consensus 116 ---~~~~~L~~~le~~~----~~~~~Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~ 172 (316)
T PHA02544 116 ---DAQRHLRSFMEAYS----KNCSFIITANNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQM 172 (316)
T ss_pred ---HHHHHHHHHHHhcC----CCceEEEEcCChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHH
Confidence 12233444455542 335788899999999999999 884 7899999999988776654
No 61
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=3e-15 Score=164.29 Aligned_cols=171 Identities=18% Similarity=0.290 Sum_probs=127.1
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC------------
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY------------ 263 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~------------ 263 (517)
...|.+|++|+|.+..++.|.+. +... ..+..||||||+|||||++++++|+.+++
T Consensus 9 KYRPqtFdEVIGQe~Vv~~L~~a----L~~g--------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C 76 (830)
T PRK07003 9 KWRPKDFASLVGQEHVVRALTHA----LDGG--------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVC 76 (830)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHH----HhcC--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCccc
Confidence 45899999999998887665443 3321 22347999999999999999999999865
Q ss_pred ------------ceEEEeeccccChHHHHHHHHhc------cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCC
Q 010133 264 ------------DIYDLELTEVHNNSELRKLLMKT------SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYY 325 (517)
Q Consensus 264 ------------~i~~l~l~~~~~~~~L~~lf~~~------~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (517)
+++.+|..+-..-++++.++... ....||||||+|.+
T Consensus 77 ~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~L------------------------- 131 (830)
T PRK07003 77 RACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHML------------------------- 131 (830)
T ss_pred HHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhC-------------------------
Confidence 34555544333445677776543 23579999999987
Q ss_pred CcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHH
Q 010133 326 EPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILL 405 (517)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~ 405 (517)
.....+.||..|+.. ....+||++||++.+|.+.|+. |+ .++.|..++.++....+
T Consensus 132 -----------------T~~A~NALLKtLEEP----P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L 187 (830)
T PRK07003 132 -----------------TNHAFNAMLKTLEEP----PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHL 187 (830)
T ss_pred -----------------CHHHHHHHHHHHHhc----CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHH
Confidence 224567788888764 2357899999999999999998 88 78999999999999999
Q ss_pred HHhcCCCCCCCChHhHHHHHHh
Q 010133 406 KNYLGYEESDLEDETLKELEDV 427 (517)
Q Consensus 406 ~~~l~~~~~~~~~~~~~~i~~l 427 (517)
+..+..++..++++.+..|.+.
T Consensus 188 ~~Il~~EgI~id~eAL~lIA~~ 209 (830)
T PRK07003 188 ERILGEERIAFEPQALRLLARA 209 (830)
T ss_pred HHHHHHcCCCCCHHHHHHHHHH
Confidence 8888766655555555555443
No 62
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.65 E-value=1.9e-15 Score=153.78 Aligned_cols=150 Identities=23% Similarity=0.320 Sum_probs=112.3
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccChH
Q 010133 198 HPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNNS 277 (517)
Q Consensus 198 ~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~~~ 277 (517)
.|.+|++++|.+.+..+ -.-+.+.+... .-.+.+|||||||||||||+.||+..+.+|..++...- +-.
T Consensus 19 RP~~lde~vGQ~HLlg~-~~~lrr~v~~~---------~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~-gvk 87 (436)
T COG2256 19 RPKSLDEVVGQEHLLGE-GKPLRRAVEAG---------HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS-GVK 87 (436)
T ss_pred CCCCHHHhcChHhhhCC-CchHHHHHhcC---------CCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc-cHH
Confidence 58999999998776432 12233333331 11369999999999999999999999999999987654 667
Q ss_pred HHHHHHHhc------cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHH
Q 010133 278 ELRKLLMKT------SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLL 351 (517)
Q Consensus 278 ~L~~lf~~~------~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 351 (517)
+++.++.++ ..+.|||||||+++ .+.....||
T Consensus 88 dlr~i~e~a~~~~~~gr~tiLflDEIHRf------------------------------------------nK~QQD~lL 125 (436)
T COG2256 88 DLREIIEEARKNRLLGRRTILFLDEIHRF------------------------------------------NKAQQDALL 125 (436)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEehhhhc------------------------------------------Chhhhhhhh
Confidence 899998776 24799999999997 223344567
Q ss_pred HhhcCCcccCCCceEEEEEe--CCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhc
Q 010133 352 NFTDGLWSCCGSEKIFVFTT--NHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYL 409 (517)
Q Consensus 352 n~lDg~~s~~~~~~iiI~TT--N~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l 409 (517)
-.++. +.+++|++| |..-.|.+||+. |. +...+.+.+.++++++++.-+
T Consensus 126 p~vE~------G~iilIGATTENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~ 176 (436)
T COG2256 126 PHVEN------GTIILIGATTENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRAL 176 (436)
T ss_pred hhhcC------CeEEEEeccCCCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHH
Confidence 66643 347777754 555678999998 76 667889999999999988843
No 63
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=5.4e-15 Score=160.76 Aligned_cols=171 Identities=17% Similarity=0.303 Sum_probs=127.4
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC------------
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY------------ 263 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~------------ 263 (517)
...|.+|++|+|.+..++.|...+. + | ..+..|||+||||||||++|+++|+.++.
T Consensus 8 KyRPktFddVIGQe~vv~~L~~aI~----~-------g-rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C 75 (702)
T PRK14960 8 KYRPRNFNELVGQNHVSRALSSALE----R-------G-RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVC 75 (702)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH----c-------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccC
Confidence 3579999999999988776655443 2 1 12358999999999999999999999875
Q ss_pred ------------ceEEEeeccccChHHHHHHHHhc------cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCC
Q 010133 264 ------------DIYDLELTEVHNNSELRKLLMKT------SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYY 325 (517)
Q Consensus 264 ------------~i~~l~l~~~~~~~~L~~lf~~~------~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (517)
+++.++.++-..-..++.++... ....|++|||+|.+
T Consensus 76 ~sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~L------------------------- 130 (702)
T PRK14960 76 ATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHML------------------------- 130 (702)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhc-------------------------
Confidence 55666665444556677776544 24579999999986
Q ss_pred CcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHH
Q 010133 326 EPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILL 405 (517)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~ 405 (517)
+....+.||..|+.. .....+|++|+.+.++.+.++. |+ .++.|.+++.++....+
T Consensus 131 -----------------S~~A~NALLKtLEEP----P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L 186 (702)
T PRK14960 131 -----------------STHSFNALLKTLEEP----PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHL 186 (702)
T ss_pred -----------------CHHHHHHHHHHHhcC----CCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHH
Confidence 223567788888764 2346788888889999999987 88 68999999999999888
Q ss_pred HHhcCCCCCCCChHhHHHHHHh
Q 010133 406 KNYLGYEESDLEDETLKELEDV 427 (517)
Q Consensus 406 ~~~l~~~~~~~~~~~~~~i~~l 427 (517)
+..+..++..++...+..|++.
T Consensus 187 ~~Il~kEgI~id~eAL~~IA~~ 208 (702)
T PRK14960 187 GAILEKEQIAADQDAIWQIAES 208 (702)
T ss_pred HHHHHHcCCCCCHHHHHHHHHH
Confidence 8887766655555555555443
No 64
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.3e-14 Score=151.45 Aligned_cols=171 Identities=20% Similarity=0.299 Sum_probs=120.6
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC------------
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY------------ 263 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~------------ 263 (517)
...|.+|++|+|.+..++.+.+.+ .. | ..+..|||+||||||||++|+++|+.++.
T Consensus 9 kyrP~~~~~iiGq~~~~~~l~~~~----~~-------~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c 76 (363)
T PRK14961 9 KWRPQYFRDIIGQKHIVTAISNGL----SL-------G-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKC 76 (363)
T ss_pred HhCCCchhhccChHHHHHHHHHHH----Hc-------C-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 347899999999998877654433 22 1 12347999999999999999999999863
Q ss_pred ------------ceEEEeeccccChHHHHHHHHhc---c---CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCC
Q 010133 264 ------------DIYDLELTEVHNNSELRKLLMKT---S---SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYY 325 (517)
Q Consensus 264 ------------~i~~l~l~~~~~~~~L~~lf~~~---~---~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (517)
+++.++.++-..-..++.++... + ...|++|||+|.+
T Consensus 77 ~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l------------------------- 131 (363)
T PRK14961 77 IICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHML------------------------- 131 (363)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhc-------------------------
Confidence 34444443322344566665543 1 3469999999986
Q ss_pred CcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHH
Q 010133 326 EPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILL 405 (517)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~ 405 (517)
.....+.||..++.. +....+|++|+.++.+.+++.. |+ ..++|++++.++....+
T Consensus 132 -----------------~~~a~naLLk~lEe~----~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L 187 (363)
T PRK14961 132 -----------------SRHSFNALLKTLEEP----PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFL 187 (363)
T ss_pred -----------------CHHHHHHHHHHHhcC----CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHH
Confidence 123456788887764 2346778888888999999987 77 67899999999999888
Q ss_pred HHhcCCCCCCCChHhHHHHHHh
Q 010133 406 KNYLGYEESDLEDETLKELEDV 427 (517)
Q Consensus 406 ~~~l~~~~~~~~~~~~~~i~~l 427 (517)
+..+...+..++++.+..++..
T Consensus 188 ~~~~~~~g~~i~~~al~~ia~~ 209 (363)
T PRK14961 188 KYILIKESIDTDEYALKLIAYH 209 (363)
T ss_pred HHHHHHcCCCCCHHHHHHHHHH
Confidence 8876655544555555555544
No 65
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.62 E-value=2.8e-15 Score=147.53 Aligned_cols=172 Identities=23% Similarity=0.327 Sum_probs=126.4
Q ss_pred cccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC------ceEE
Q 010133 194 VSFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY------DIYD 267 (517)
Q Consensus 194 ~~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~------~i~~ 267 (517)
+..+.|.+|+++++.+.+.+.+.+.+.. -.. ..|||||||||||||.|.|.|..++. .+..
T Consensus 27 teKYrPkt~de~~gQe~vV~~L~~a~~~-~~l------------p~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ 93 (346)
T KOG0989|consen 27 TEKYRPKTFDELAGQEHVVQVLKNALLR-RIL------------PHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLE 93 (346)
T ss_pred HHHhCCCcHHhhcchHHHHHHHHHHHhh-cCC------------ceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhh
Confidence 4578999999999999998888776665 222 27999999999999999999999965 2334
Q ss_pred EeeccccC----------hHHHHHHHHh-c----cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccC
Q 010133 268 LELTEVHN----------NSELRKLLMK-T----SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCG 332 (517)
Q Consensus 268 l~l~~~~~----------~~~L~~lf~~-~----~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (517)
++.++... -+.+...... . +..-||+|||.|.+
T Consensus 94 lnaSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm-------------------------------- 141 (346)
T KOG0989|consen 94 LNASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSM-------------------------------- 141 (346)
T ss_pred hcccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhh--------------------------------
Confidence 44444321 1112111110 0 12369999999987
Q ss_pred CCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCC
Q 010133 333 SGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYE 412 (517)
Q Consensus 333 ~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~ 412 (517)
...+.+.|.+.||... ....+|+.||++++|.+-+.. |. .++.|+....+....-++.....+
T Consensus 142 ----------tsdaq~aLrr~mE~~s----~~trFiLIcnylsrii~pi~S--RC-~KfrFk~L~d~~iv~rL~~Ia~~E 204 (346)
T KOG0989|consen 142 ----------TSDAQAALRRTMEDFS----RTTRFILICNYLSRIIRPLVS--RC-QKFRFKKLKDEDIVDRLEKIASKE 204 (346)
T ss_pred ----------hHHHHHHHHHHHhccc----cceEEEEEcCChhhCChHHHh--hH-HHhcCCCcchHHHHHHHHHHHHHh
Confidence 3457888999999852 346788999999999999998 87 567888877777777788888778
Q ss_pred CCCCChHhHHHHHHh
Q 010133 413 ESDLEDETLKELEDV 427 (517)
Q Consensus 413 ~~~~~~~~~~~i~~l 427 (517)
+.+++.+.++.|+..
T Consensus 205 ~v~~d~~al~~I~~~ 219 (346)
T KOG0989|consen 205 GVDIDDDALKLIAKI 219 (346)
T ss_pred CCCCCHHHHHHHHHH
Confidence 777777777776664
No 66
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=2.1e-14 Score=154.79 Aligned_cols=170 Identities=19% Similarity=0.305 Sum_probs=123.2
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC------------
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY------------ 263 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~------------ 263 (517)
...|.+|++++|.+.....+...+ .. | ..+.+|||+||||||||++|+++|+.+++
T Consensus 14 kyRP~~f~dliGq~~vv~~L~~ai----~~-------~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~ 81 (507)
T PRK06645 14 KYRPSNFAELQGQEVLVKVLSYTI----LN-------D-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT 81 (507)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHH----Hc-------C-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC
Confidence 468999999999998866553322 21 1 22358999999999999999999999865
Q ss_pred ----------------ceEEEeeccccChHHHHHHHHhcc------CCcEEEEccchhhhccccccccCCCCCCCCCCCC
Q 010133 264 ----------------DIYDLELTEVHNNSELRKLLMKTS------SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGN 321 (517)
Q Consensus 264 ----------------~i~~l~l~~~~~~~~L~~lf~~~~------~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~ 321 (517)
+++.++..+-.+-.+++.++..+. ..-|++|||+|.+
T Consensus 82 C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~L--------------------- 140 (507)
T PRK06645 82 CEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHML--------------------- 140 (507)
T ss_pred CCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhc---------------------
Confidence 334444433334566777776542 4579999999986
Q ss_pred CCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHH
Q 010133 322 GNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPAL 401 (517)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~ 401 (517)
....++.||..|+.. ....++|++|+.++++++++.. |+ ..+.|..++.++.
T Consensus 141 ---------------------s~~a~naLLk~LEep----p~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el 192 (507)
T PRK06645 141 ---------------------SKGAFNALLKTLEEP----PPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEI 192 (507)
T ss_pred ---------------------CHHHHHHHHHHHhhc----CCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHH
Confidence 124567788888753 3447888888899999999998 77 6789999999999
Q ss_pred HHHHHHhcCCCCCCCChHhHHHHHH
Q 010133 402 LILLKNYLGYEESDLEDETLKELED 426 (517)
Q Consensus 402 ~~l~~~~l~~~~~~~~~~~~~~i~~ 426 (517)
..+++..+..++..++.+.+..|.+
T Consensus 193 ~~~L~~i~~~egi~ie~eAL~~Ia~ 217 (507)
T PRK06645 193 FKLLEYITKQENLKTDIEALRIIAY 217 (507)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9999888766655554444444433
No 67
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.61 E-value=1.4e-14 Score=153.96 Aligned_cols=169 Identities=22% Similarity=0.285 Sum_probs=118.1
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccC
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHN 275 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~ 275 (517)
...|.+|++++|.+..... ...+...+... ...++||+||||||||++|+++|+.++.+++.++.... +
T Consensus 5 ~~RP~~l~d~vGq~~~v~~-~~~L~~~i~~~---------~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-~ 73 (413)
T PRK13342 5 RMRPKTLDEVVGQEHLLGP-GKPLRRMIEAG---------RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-G 73 (413)
T ss_pred hhCCCCHHHhcCcHHHhCc-chHHHHHHHcC---------CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc-c
Confidence 3578999999999877544 11233333321 12379999999999999999999999999999987654 4
Q ss_pred hHHHHHHHHhc------cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHH
Q 010133 276 NSELRKLLMKT------SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSG 349 (517)
Q Consensus 276 ~~~L~~lf~~~------~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 349 (517)
...++.++... ..+.||||||||++. ......
T Consensus 74 ~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~------------------------------------------~~~q~~ 111 (413)
T PRK13342 74 VKDLREVIEEARQRRSAGRRTILFIDEIHRFN------------------------------------------KAQQDA 111 (413)
T ss_pred HHHHHHHHHHHHHhhhcCCceEEEEechhhhC------------------------------------------HHHHHH
Confidence 45566666554 267899999999861 123455
Q ss_pred HHHhhcCCcccCCCceEEEEEe--CCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCC--CC-CCChHhHHHH
Q 010133 350 LLNFTDGLWSCCGSEKIFVFTT--NHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYE--ES-DLEDETLKEL 424 (517)
Q Consensus 350 LLn~lDg~~s~~~~~~iiI~TT--N~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~--~~-~~~~~~~~~i 424 (517)
||..++. +..++|++| |....++++|++ |+ ..+.|.+++.++...+++..+... +. .++.+.+..+
T Consensus 112 LL~~le~------~~iilI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l 182 (413)
T PRK13342 112 LLPHVED------GTITLIGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDAL 182 (413)
T ss_pred HHHHhhc------CcEEEEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Confidence 6666654 235566554 445688999999 88 778999999999999998876432 11 3444444444
Q ss_pred HH
Q 010133 425 ED 426 (517)
Q Consensus 425 ~~ 426 (517)
.+
T Consensus 183 ~~ 184 (413)
T PRK13342 183 AR 184 (413)
T ss_pred HH
Confidence 44
No 68
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=1.8e-14 Score=155.96 Aligned_cols=168 Identities=17% Similarity=0.284 Sum_probs=122.7
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCc-----------
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYD----------- 264 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~----------- 264 (517)
...|.+|++|+|.+..++.+.+.+. .. ..+..||||||||||||++|+++|+.++..
T Consensus 9 kyRP~~f~divGq~~v~~~L~~~~~----~~--------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 76 (509)
T PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALD----QQ--------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDC 76 (509)
T ss_pred HHCCCCHHHhcCCHHHHHHHHHHHH----hC--------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCC
Confidence 4589999999999998776655442 21 123479999999999999999999999653
Q ss_pred -------------eEEEeeccccChHHHHHHHHhcc------CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCC
Q 010133 265 -------------IYDLELTEVHNNSELRKLLMKTS------SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYY 325 (517)
Q Consensus 265 -------------i~~l~l~~~~~~~~L~~lf~~~~------~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (517)
++.++..+-..-+.++.++.... ...|++|||+|.+
T Consensus 77 ~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~l------------------------- 131 (509)
T PRK14958 77 ENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHML------------------------- 131 (509)
T ss_pred HHHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhc-------------------------
Confidence 66666654445566777765432 3469999999987
Q ss_pred CcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHH
Q 010133 326 EPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILL 405 (517)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~ 405 (517)
+....+.||..|+.. ....++|++|+.+.++.+.++. |+ ..++|..++.++....+
T Consensus 132 -----------------s~~a~naLLk~LEep----p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l 187 (509)
T PRK14958 132 -----------------SGHSFNALLKTLEEP----PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHC 187 (509)
T ss_pred -----------------CHHHHHHHHHHHhcc----CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHH
Confidence 223567888888865 2346788888889999999888 77 67889999988888777
Q ss_pred HHhcCCCCCCCChHhHHHH
Q 010133 406 KNYLGYEESDLEDETLKEL 424 (517)
Q Consensus 406 ~~~l~~~~~~~~~~~~~~i 424 (517)
+..+..++..+++..+..|
T Consensus 188 ~~il~~egi~~~~~al~~i 206 (509)
T PRK14958 188 QHLLKEENVEFENAALDLL 206 (509)
T ss_pred HHHHHHcCCCCCHHHHHHH
Confidence 7776655544444433333
No 69
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=3e-14 Score=152.51 Aligned_cols=170 Identities=16% Similarity=0.246 Sum_probs=127.0
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhC-------------
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLG------------- 262 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~------------- 262 (517)
...|.+|++|+|.+..++.+.+ .+.. | ..+.+|||+|||||||||+|+++|..++
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~----a~~~-------~-ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C 73 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRN----AFTL-------N-KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTC 73 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHH----HHHc-------C-CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcccc
Confidence 3579999999999887665432 2222 1 2245899999999999999999998763
Q ss_pred -----------CceEEEeeccccChHHHHHHHHhc------cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCC
Q 010133 263 -----------YDIYDLELTEVHNNSELRKLLMKT------SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYY 325 (517)
Q Consensus 263 -----------~~i~~l~l~~~~~~~~L~~lf~~~------~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (517)
.+++.++.++-.+-++++.++... ...-|++|||+|.+
T Consensus 74 ~~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~L------------------------- 128 (491)
T PRK14964 74 HNCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHML------------------------- 128 (491)
T ss_pred HHHHHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhC-------------------------
Confidence 456777776555666788777654 24579999999986
Q ss_pred CcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHH
Q 010133 326 EPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILL 405 (517)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~ 405 (517)
+...++.||..|+.. ....++|++|+.++++.++++. |+ ..+.|.+++.++....+
T Consensus 129 -----------------s~~A~NaLLK~LEeP----p~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L 184 (491)
T PRK14964 129 -----------------SNSAFNALLKTLEEP----APHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHL 184 (491)
T ss_pred -----------------CHHHHHHHHHHHhCC----CCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHH
Confidence 224578889988875 2347888888999999999998 77 67899999999998888
Q ss_pred HHhcCCCCCCCChHhHHHHHH
Q 010133 406 KNYLGYEESDLEDETLKELED 426 (517)
Q Consensus 406 ~~~l~~~~~~~~~~~~~~i~~ 426 (517)
+..+..++..++++.+..|.+
T Consensus 185 ~~ia~~Egi~i~~eAL~lIa~ 205 (491)
T PRK14964 185 VDIAKKENIEHDEESLKLIAE 205 (491)
T ss_pred HHHHHHcCCCCCHHHHHHHHH
Confidence 888766665555555554444
No 70
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.59 E-value=5.3e-14 Score=146.22 Aligned_cols=171 Identities=20% Similarity=0.354 Sum_probs=122.2
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC------------
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY------------ 263 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~------------ 263 (517)
...|.+|++++|.+..++.+.+.+. . | ..+..||||||||+|||++|+++|..+..
T Consensus 7 ~~rp~~~~~iig~~~~~~~l~~~~~----~-------~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c 74 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQTLKNAIK----N-------G-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNEC 74 (355)
T ss_pred HhCCCcHhhccCcHHHHHHHHHHHH----c-------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 4578999999999998777655443 2 1 12457999999999999999999998742
Q ss_pred ------------ceEEEeeccccChHHHHHHHHhcc------CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCC
Q 010133 264 ------------DIYDLELTEVHNNSELRKLLMKTS------SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYY 325 (517)
Q Consensus 264 ------------~i~~l~l~~~~~~~~L~~lf~~~~------~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (517)
+++.++.........++.++..+. .+-||+|||+|.+
T Consensus 75 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l------------------------- 129 (355)
T TIGR02397 75 ESCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHML------------------------- 129 (355)
T ss_pred HHHHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhc-------------------------
Confidence 344444432223345666665532 3469999999976
Q ss_pred CcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHH
Q 010133 326 EPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILL 405 (517)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~ 405 (517)
....++.||..++.. ....++|++||.++.+.++|.+ |+ ..+++++|+.++...++
T Consensus 130 -----------------~~~~~~~Ll~~le~~----~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l 185 (355)
T TIGR02397 130 -----------------SKSAFNALLKTLEEP----PEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERL 185 (355)
T ss_pred -----------------CHHHHHHHHHHHhCC----ccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHH
Confidence 123467788888764 2346788888999999999998 77 57899999999999999
Q ss_pred HHhcCCCCCCCChHhHHHHHHh
Q 010133 406 KNYLGYEESDLEDETLKELEDV 427 (517)
Q Consensus 406 ~~~l~~~~~~~~~~~~~~i~~l 427 (517)
+.++...+..+++..+..+...
T Consensus 186 ~~~~~~~g~~i~~~a~~~l~~~ 207 (355)
T TIGR02397 186 KKILDKEGIKIEDEALELIARA 207 (355)
T ss_pred HHHHHHcCCCCCHHHHHHHHHH
Confidence 8877665555555555444443
No 71
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=3.4e-14 Score=155.82 Aligned_cols=171 Identities=17% Similarity=0.265 Sum_probs=125.4
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCc-----------
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYD----------- 264 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~----------- 264 (517)
...|.+|++|+|.+..++.|...+. .. ..+.+|||+||||||||++|+++|+.+++.
T Consensus 9 KYRP~tFddIIGQe~vv~~L~~ai~----~~--------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C 76 (709)
T PRK08691 9 KWRPKTFADLVGQEHVVKALQNALD----EG--------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVC 76 (709)
T ss_pred HhCCCCHHHHcCcHHHHHHHHHHHH----cC--------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCccc
Confidence 4589999999999988776655433 21 234589999999999999999999988643
Q ss_pred -------------eEEEeeccccChHHHHHHHHhc------cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCC
Q 010133 265 -------------IYDLELTEVHNNSELRKLLMKT------SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYY 325 (517)
Q Consensus 265 -------------i~~l~l~~~~~~~~L~~lf~~~------~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (517)
++.++..+-.....++.++... ....||||||+|.+
T Consensus 77 ~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~L------------------------- 131 (709)
T PRK08691 77 QSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHML------------------------- 131 (709)
T ss_pred HHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECcccc-------------------------
Confidence 3444444333455677777543 24579999999975
Q ss_pred CcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHH
Q 010133 326 EPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILL 405 (517)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~ 405 (517)
....++.||..|+... +..++|++||.+.++.+.++. |+ ..+.|..++.++....+
T Consensus 132 -----------------s~~A~NALLKtLEEPp----~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L 187 (709)
T PRK08691 132 -----------------SKSAFNAMLKTLEEPP----EHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHL 187 (709)
T ss_pred -----------------CHHHHHHHHHHHHhCC----CCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHH
Confidence 1235678888887642 346788889999999999986 88 77888899999999999
Q ss_pred HHhcCCCCCCCChHhHHHHHHh
Q 010133 406 KNYLGYEESDLEDETLKELEDV 427 (517)
Q Consensus 406 ~~~l~~~~~~~~~~~~~~i~~l 427 (517)
+..+..++..+++..+..|.+.
T Consensus 188 ~~Il~kEgi~id~eAL~~Ia~~ 209 (709)
T PRK08691 188 AHVLDSEKIAYEPPALQLLGRA 209 (709)
T ss_pred HHHHHHcCCCcCHHHHHHHHHH
Confidence 8888776665555555554443
No 72
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=4.3e-14 Score=157.89 Aligned_cols=171 Identities=18% Similarity=0.267 Sum_probs=122.3
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCc-----------
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYD----------- 264 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~----------- 264 (517)
...|.+|++|+|.+..++.|.+ ++... ..+..||||||||||||++|+++|+.++..
T Consensus 9 KyRP~tFddIIGQe~Iv~~Lkn----aI~~~--------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 9 KWRPATFEQMVGQSHVLHALTN----ALTQQ--------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred HhCCCCHHHhcCcHHHHHHHHH----HHHhC--------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 3578999999999988766543 33321 123468999999999999999999999763
Q ss_pred -------------eEEEeeccccChHHHHHHHHhc------cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCC
Q 010133 265 -------------IYDLELTEVHNNSELRKLLMKT------SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYY 325 (517)
Q Consensus 265 -------------i~~l~l~~~~~~~~L~~lf~~~------~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (517)
++.++..+...-..++.+.... ...-|+||||+|.+
T Consensus 77 ~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L------------------------- 131 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML------------------------- 131 (944)
T ss_pred hHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc-------------------------
Confidence 1222222212234466665432 23569999999987
Q ss_pred CcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHH
Q 010133 326 EPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILL 405 (517)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~ 405 (517)
....++.||..|+.. .+..++|++|+.+.+|.++|+. |+ .++.|.+++.++....+
T Consensus 132 -----------------T~eAqNALLKtLEEP----P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L 187 (944)
T PRK14949 132 -----------------SRSSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQL 187 (944)
T ss_pred -----------------CHHHHHHHHHHHhcc----CCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHH
Confidence 345788899999864 2346677778889999999998 87 78999999999999888
Q ss_pred HHhcCCCCCCCChHhHHHHHHh
Q 010133 406 KNYLGYEESDLEDETLKELEDV 427 (517)
Q Consensus 406 ~~~l~~~~~~~~~~~~~~i~~l 427 (517)
+..+..++..++...+..|...
T Consensus 188 ~~il~~EgI~~edeAL~lIA~~ 209 (944)
T PRK14949 188 NHILTQEQLPFEAEALTLLAKA 209 (944)
T ss_pred HHHHHHcCCCCCHHHHHHHHHH
Confidence 8877655555555555555554
No 73
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.58 E-value=1.8e-14 Score=164.65 Aligned_cols=174 Identities=16% Similarity=0.207 Sum_probs=119.1
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh----------CCceEE
Q 010133 198 HPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL----------GYDIYD 267 (517)
Q Consensus 198 ~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l----------~~~i~~ 267 (517)
.|.+++.++|.+.....+++.+.+- .+.+++|+||||||||++++++|..+ +..++.
T Consensus 182 r~~~ld~~iGr~~ei~~~i~~l~r~-------------~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 182 REGKIDPVLGRDDEIRQMIDILLRR-------------RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred cCCCCCcccCCHHHHHHHHHHHhcC-------------CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 5778999999988766555543221 23489999999999999999999986 366888
Q ss_pred EeeccccC--------hHHHHHHHHhc---cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCC
Q 010133 268 LELTEVHN--------NSELRKLLMKT---SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSV 336 (517)
Q Consensus 268 l~l~~~~~--------~~~L~~lf~~~---~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (517)
++++.+.. ...++.+|... ..++||||||||++....+ .
T Consensus 249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~------------------------------~ 298 (852)
T TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGG------------------------------Q 298 (852)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCC------------------------------c
Confidence 88876531 25788888765 3579999999999852100 0
Q ss_pred CCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCC-----CChhhhccCCceeeEeccCCCHHHHHHHHHHhcCC
Q 010133 337 GGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEK-----LDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGY 411 (517)
Q Consensus 337 ~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~-----LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~ 411 (517)
.+... .-+-|+..+. .++..+|+||+..+. +||||.| ||. .|.++.|+.++...|++.+...
T Consensus 299 ~~~~d----~~n~Lkp~l~------~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~ 365 (852)
T TIGR03345 299 AGQGD----AANLLKPALA------RGELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPV 365 (852)
T ss_pred ccccc----HHHHhhHHhh------CCCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHh
Confidence 00011 1122333332 256788998886543 7999999 995 8999999999999997655432
Q ss_pred C----CCCCChHhHHHHHHh
Q 010133 412 E----ESDLEDETLKELEDV 427 (517)
Q Consensus 412 ~----~~~~~~~~~~~i~~l 427 (517)
. ...++++.+..+..+
T Consensus 366 ~e~~~~v~i~d~al~~~~~l 385 (852)
T TIGR03345 366 LEKHHGVLILDEAVVAAVEL 385 (852)
T ss_pred hhhcCCCeeCHHHHHHHHHH
Confidence 1 233455666655554
No 74
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=7.4e-14 Score=150.97 Aligned_cols=169 Identities=21% Similarity=0.339 Sum_probs=121.0
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC------------
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY------------ 263 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~------------ 263 (517)
...|.+|++|+|.+..++.|...+. .. ..+..||||||||||||++|+++|+.++.
T Consensus 7 KyRP~~~~dvvGq~~v~~~L~~~i~----~~--------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~ 74 (504)
T PRK14963 7 RARPITFDEVVGQEHVKEVLLAALR----QG--------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE 74 (504)
T ss_pred hhCCCCHHHhcChHHHHHHHHHHHH----cC--------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence 3579999999999988666644433 21 12345899999999999999999999853
Q ss_pred -----------ceEEEeeccccChHHHHHHHHhc------cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCC
Q 010133 264 -----------DIYDLELTEVHNNSELRKLLMKT------SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYE 326 (517)
Q Consensus 264 -----------~i~~l~l~~~~~~~~L~~lf~~~------~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (517)
+++.++.+...+-..++.+.... ..+.||||||+|.+
T Consensus 75 sc~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l-------------------------- 128 (504)
T PRK14963 75 SCLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMM-------------------------- 128 (504)
T ss_pred hhHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECcccc--------------------------
Confidence 25555554333444555553322 25679999999975
Q ss_pred cccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHH
Q 010133 327 PEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLK 406 (517)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~ 406 (517)
....++.||..|+.. ....++|++||.+..+.+++.. |+ .++.|.+++.++....++
T Consensus 129 ----------------s~~a~naLLk~LEep----~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~ 185 (504)
T PRK14963 129 ----------------SKSAFNALLKTLEEP----PEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLR 185 (504)
T ss_pred ----------------CHHHHHHHHHHHHhC----CCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHH
Confidence 234577888888764 2346788889999999999998 76 479999999999999988
Q ss_pred HhcCCCCCCCChHhHHHHH
Q 010133 407 NYLGYEESDLEDETLKELE 425 (517)
Q Consensus 407 ~~l~~~~~~~~~~~~~~i~ 425 (517)
..+..++..++.+.+..|.
T Consensus 186 ~i~~~egi~i~~~Al~~ia 204 (504)
T PRK14963 186 RLLEAEGREAEPEALQLVA 204 (504)
T ss_pred HHHHHcCCCCCHHHHHHHH
Confidence 8776655544444444433
No 75
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=4.3e-14 Score=155.46 Aligned_cols=169 Identities=18% Similarity=0.278 Sum_probs=123.3
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC-------------
Q 010133 197 KHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY------------- 263 (517)
Q Consensus 197 ~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~------------- 263 (517)
.+|.+|++|+|.+..++.|.+.+. .. ..+..|||+||||||||++|+++|+.++.
T Consensus 10 yRP~~f~divGQe~vv~~L~~~l~----~~--------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (647)
T PRK07994 10 WRPQTFAEVVGQEHVLTALANALD----LG--------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECD 77 (647)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH----cC--------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCH
Confidence 479999999999988776544332 21 12346999999999999999999999976
Q ss_pred -----------ceEEEeeccccChHHHHHHHHhcc------CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCC
Q 010133 264 -----------DIYDLELTEVHNNSELRKLLMKTS------SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYE 326 (517)
Q Consensus 264 -----------~i~~l~l~~~~~~~~L~~lf~~~~------~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (517)
+++.++..+-..-+.++.+..... ..-|+||||+|.+
T Consensus 78 ~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L-------------------------- 131 (647)
T PRK07994 78 NCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHML-------------------------- 131 (647)
T ss_pred HHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC--------------------------
Confidence 344555443223455676655432 4469999999987
Q ss_pred cccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHH
Q 010133 327 PEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLK 406 (517)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~ 406 (517)
+....+.||..|+.- .+..++|++|+.+.+|.+.++. |+ ..+.|..++.++....++
T Consensus 132 ----------------s~~a~NALLKtLEEP----p~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~ 188 (647)
T PRK07994 132 ----------------SRHSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLE 188 (647)
T ss_pred ----------------CHHHHHHHHHHHHcC----CCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHH
Confidence 345678899988864 3446788888889999999998 86 889999999999998888
Q ss_pred HhcCCCCCCCChHhHHHHHH
Q 010133 407 NYLGYEESDLEDETLKELED 426 (517)
Q Consensus 407 ~~l~~~~~~~~~~~~~~i~~ 426 (517)
..+..++...+...+..|+.
T Consensus 189 ~il~~e~i~~e~~aL~~Ia~ 208 (647)
T PRK07994 189 HILQAEQIPFEPRALQLLAR 208 (647)
T ss_pred HHHHHcCCCCCHHHHHHHHH
Confidence 87755544444444444443
No 76
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=6.9e-14 Score=153.33 Aligned_cols=170 Identities=21% Similarity=0.331 Sum_probs=125.2
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhC--------------
Q 010133 197 KHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLG-------------- 262 (517)
Q Consensus 197 ~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~-------------- 262 (517)
..|.+|++|+|.+..++.+.+.+.. . ..+..||||||||||||++|+.+|..++
T Consensus 10 ~rP~~f~~viGq~~v~~~L~~~i~~----~--------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~ 77 (559)
T PRK05563 10 WRPQTFEDVVGQEHITKTLKNAIKQ----G--------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECE 77 (559)
T ss_pred hCCCcHHhccCcHHHHHHHHHHHHc----C--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccH
Confidence 4799999999999887766554432 1 1245799999999999999999999885
Q ss_pred ----------CceEEEeeccccChHHHHHHHHhcc------CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCC
Q 010133 263 ----------YDIYDLELTEVHNNSELRKLLMKTS------SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYE 326 (517)
Q Consensus 263 ----------~~i~~l~l~~~~~~~~L~~lf~~~~------~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (517)
.+++.++.++..+-+.++.+..... ..-|++|||+|.+
T Consensus 78 ~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~L-------------------------- 131 (559)
T PRK05563 78 ICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHML-------------------------- 131 (559)
T ss_pred HHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccC--------------------------
Confidence 3566666654445566777766532 3569999999986
Q ss_pred cccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHH
Q 010133 327 PEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLK 406 (517)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~ 406 (517)
....++.||..++.. ....++|++|+.++++.+++++ |+ ..+.|..++.++....++
T Consensus 132 ----------------t~~a~naLLKtLEep----p~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~ 188 (559)
T PRK05563 132 ----------------STGAFNALLKTLEEP----PAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLK 188 (559)
T ss_pred ----------------CHHHHHHHHHHhcCC----CCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHH
Confidence 123577888888765 2347888888889999999998 77 468899999999988888
Q ss_pred HhcCCCCCCCChHhHHHHHHh
Q 010133 407 NYLGYEESDLEDETLKELEDV 427 (517)
Q Consensus 407 ~~l~~~~~~~~~~~~~~i~~l 427 (517)
..+...+..++...+..++..
T Consensus 189 ~i~~~egi~i~~~al~~ia~~ 209 (559)
T PRK05563 189 YILDKEGIEYEDEALRLIARA 209 (559)
T ss_pred HHHHHcCCCCCHHHHHHHHHH
Confidence 877665555555555444443
No 77
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=1.1e-13 Score=144.76 Aligned_cols=171 Identities=18% Similarity=0.315 Sum_probs=120.0
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC------------
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY------------ 263 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~------------ 263 (517)
...|.+|++|+|.+..++.+.+.+. . | ..+.+||||||||+|||++++++|+.++.
T Consensus 10 k~rP~~~~~iig~~~~~~~l~~~i~----~-------~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~ 77 (367)
T PRK14970 10 KYRPQTFDDVVGQSHITNTLLNAIE----N-------N-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSF 77 (367)
T ss_pred HHCCCcHHhcCCcHHHHHHHHHHHH----c-------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCc
Confidence 4679999999999888666554443 2 1 22458999999999999999999998753
Q ss_pred ceEEEeeccccChHHHHHHHHhc------cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCC
Q 010133 264 DIYDLELTEVHNNSELRKLLMKT------SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVG 337 (517)
Q Consensus 264 ~i~~l~l~~~~~~~~L~~lf~~~------~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (517)
.++.++.....+...++.++..+ ..+.||+|||+|.+.
T Consensus 78 ~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~------------------------------------ 121 (367)
T PRK14970 78 NIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS------------------------------------ 121 (367)
T ss_pred ceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC------------------------------------
Confidence 23333332323346677777643 245799999999761
Q ss_pred CCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCC
Q 010133 338 GEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLE 417 (517)
Q Consensus 338 ~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~ 417 (517)
...++.|+..++.. +...++|++|+.+..+.+++.+ |+ ..+.+.+|+.++...++...+...+..++
T Consensus 122 ------~~~~~~ll~~le~~----~~~~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~ 188 (367)
T PRK14970 122 ------SAAFNAFLKTLEEP----PAHAIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFE 188 (367)
T ss_pred ------HHHHHHHHHHHhCC----CCceEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCC
Confidence 22467788888763 2346778888888999999988 66 46899999999988888776655554444
Q ss_pred hHhHHHHHHh
Q 010133 418 DETLKELEDV 427 (517)
Q Consensus 418 ~~~~~~i~~l 427 (517)
.+.+..+...
T Consensus 189 ~~al~~l~~~ 198 (367)
T PRK14970 189 DDALHIIAQK 198 (367)
T ss_pred HHHHHHHHHh
Confidence 5545544443
No 78
>PRK06893 DNA replication initiation factor; Validated
Probab=99.57 E-value=9.8e-14 Score=135.89 Aligned_cols=177 Identities=14% Similarity=0.196 Sum_probs=109.2
Q ss_pred cccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEee
Q 010133 194 VSFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLEL 270 (517)
Q Consensus 194 ~~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l 270 (517)
+....+.+|+++++.+.. .....+.+-. .. ...+.++||||||||||+|++|+|+++ +..+..+++
T Consensus 7 ~~~~~~~~fd~f~~~~~~--~~~~~~~~~~------~~---~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~ 75 (229)
T PRK06893 7 IHQIDDETLDNFYADNNL--LLLDSLRKNF------ID---LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL 75 (229)
T ss_pred CCCCCcccccccccCChH--HHHHHHHHHh------hc---cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH
Confidence 345677899999976542 2222222111 11 112357999999999999999999986 456666666
Q ss_pred ccccChHHHHHHHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHH
Q 010133 271 TEVHNNSELRKLLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGL 350 (517)
Q Consensus 271 ~~~~~~~~L~~lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 350 (517)
.... .....++....+..+|+|||||.+.. .......+..+
T Consensus 76 ~~~~--~~~~~~~~~~~~~dlLilDDi~~~~~-------------------------------------~~~~~~~l~~l 116 (229)
T PRK06893 76 SKSQ--YFSPAVLENLEQQDLVCLDDLQAVIG-------------------------------------NEEWELAIFDL 116 (229)
T ss_pred HHhh--hhhHHHHhhcccCCEEEEeChhhhcC-------------------------------------ChHHHHHHHHH
Confidence 4321 12234555566778999999998620 11123345555
Q ss_pred HHhhcCCcccCCCceEEEEEeC-CCCCCC---hhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHH
Q 010133 351 LNFTDGLWSCCGSEKIFVFTTN-HIEKLD---PALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELE 425 (517)
Q Consensus 351 Ln~lDg~~s~~~~~~iiI~TTN-~~e~LD---~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~ 425 (517)
+|.+- . .+..++|+|+| .|..++ |+|.++.+.+..+.++.|+.+++..+++......+..++++....|.
T Consensus 117 ~n~~~---~--~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~ 190 (229)
T PRK06893 117 FNRIK---E--QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLL 190 (229)
T ss_pred HHHHH---H--cCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 55432 1 12345555554 566554 89998556668899999999999999987664333334444443333
No 79
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=6.7e-14 Score=158.47 Aligned_cols=164 Identities=19% Similarity=0.254 Sum_probs=119.0
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC------------
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY------------ 263 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~------------ 263 (517)
.+.|.+|++|+|.+.+++.|...+. .. .....||||||+|||||++|++||+.+++
T Consensus 8 KyRP~~f~eiiGqe~v~~~L~~~i~----~~--------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C 75 (824)
T PRK07764 8 RYRPATFAEVIGQEHVTEPLSTALD----SG--------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC 75 (824)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH----hC--------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc
Confidence 4689999999999888776554433 21 12346999999999999999999999963
Q ss_pred --------------ceEEEeeccccChHHHHHHHHhc------cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCC
Q 010133 264 --------------DIYDLELTEVHNNSELRKLLMKT------SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGN 323 (517)
Q Consensus 264 --------------~i~~l~l~~~~~~~~L~~lf~~~------~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (517)
+++.++..+...-+.++.+.... ...-|+||||+|.+
T Consensus 76 ~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l----------------------- 132 (824)
T PRK07764 76 DSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMV----------------------- 132 (824)
T ss_pred HHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhc-----------------------
Confidence 34444443323345556553321 25579999999987
Q ss_pred CCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHH
Q 010133 324 YYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLI 403 (517)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~ 403 (517)
.....+.||+.|+.. ....++|++|+.+++|-++|+. |. .++.|..++.++...
T Consensus 133 -------------------t~~a~NaLLK~LEEp----P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~ 186 (824)
T PRK07764 133 -------------------TPQGFNALLKIVEEP----PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRG 186 (824)
T ss_pred -------------------CHHHHHHHHHHHhCC----CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHH
Confidence 234577889988875 2447888888999999999988 76 688999999999988
Q ss_pred HHHHhcCCCCCCCChHh
Q 010133 404 LLKNYLGYEESDLEDET 420 (517)
Q Consensus 404 l~~~~l~~~~~~~~~~~ 420 (517)
+++.++..++..++...
T Consensus 187 ~L~~il~~EGv~id~ea 203 (824)
T PRK07764 187 YLERICAQEGVPVEPGV 203 (824)
T ss_pred HHHHHHHHcCCCCCHHH
Confidence 88887755554444443
No 80
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=6.7e-14 Score=153.61 Aligned_cols=170 Identities=18% Similarity=0.260 Sum_probs=121.9
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC------------
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY------------ 263 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~------------ 263 (517)
...|.+|++|+|.+..++.|.+ ++... ..+..||||||+|||||++|+++|+.+++
T Consensus 9 KyRP~~f~dviGQe~vv~~L~~----~l~~~--------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~ 76 (618)
T PRK14951 9 KYRPRSFSEMVGQEHVVQALTN----ALTQQ--------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT 76 (618)
T ss_pred HHCCCCHHHhcCcHHHHHHHHH----HHHcC--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC
Confidence 4579999999998877655444 43332 12346999999999999999999999875
Q ss_pred -----------------ceEEEeeccccChHHHHHHHHhcc------CCcEEEEccchhhhccccccccCCCCCCCCCCC
Q 010133 264 -----------------DIYDLELTEVHNNSELRKLLMKTS------SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCG 320 (517)
Q Consensus 264 -----------------~i~~l~l~~~~~~~~L~~lf~~~~------~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~ 320 (517)
+++.++..+-..-+.++.++.... ..-|++|||+|.+
T Consensus 77 pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~L-------------------- 136 (618)
T PRK14951 77 PCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHML-------------------- 136 (618)
T ss_pred CCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhC--------------------
Confidence 344444443334456777776532 3469999999987
Q ss_pred CCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHH
Q 010133 321 NGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPA 400 (517)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~ 400 (517)
+....+.||..|+.. ....++|++|+.+.++.+.++. |+ .+++|..++.++
T Consensus 137 ----------------------s~~a~NaLLKtLEEP----P~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~ee 187 (618)
T PRK14951 137 ----------------------TNTAFNAMLKTLEEP----PEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPET 187 (618)
T ss_pred ----------------------CHHHHHHHHHhcccC----CCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHH
Confidence 233577888888764 2346788888889999999888 77 789999999999
Q ss_pred HHHHHHHhcCCCCCCCChHhHHHHHH
Q 010133 401 LLILLKNYLGYEESDLEDETLKELED 426 (517)
Q Consensus 401 ~~~l~~~~l~~~~~~~~~~~~~~i~~ 426 (517)
....++..+..++..++...+..|.+
T Consensus 188 i~~~L~~i~~~egi~ie~~AL~~La~ 213 (618)
T PRK14951 188 VLEHLTQVLAAENVPAEPQALRLLAR 213 (618)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 88888887766555554544444433
No 81
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.56 E-value=3.8e-14 Score=159.33 Aligned_cols=195 Identities=18% Similarity=0.228 Sum_probs=124.8
Q ss_pred CcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh----------CCceEEEee
Q 010133 201 TFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL----------GYDIYDLEL 270 (517)
Q Consensus 201 ~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l----------~~~i~~l~l 270 (517)
.++.++|.++....+++.+..- -+.++||+||||||||++|+++|... +..+|.+++
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r~-------------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCRR-------------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhcc-------------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 4778899888877776644441 13478999999999999999999875 666777766
Q ss_pred cccc--------ChHHHHHHHHhc--cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCC
Q 010133 271 TEVH--------NNSELRKLLMKT--SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGED 340 (517)
Q Consensus 271 ~~~~--------~~~~L~~lf~~~--~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (517)
..+. .+..++.+|... ..++||||||||.+++..+.
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~---------------------------------- 296 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA---------------------------------- 296 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCC----------------------------------
Confidence 6542 134466776544 36789999999998631100
Q ss_pred CchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCC-----CCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCC---
Q 010133 341 GNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIE-----KLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYE--- 412 (517)
Q Consensus 341 ~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e-----~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~--- 412 (517)
......+..+|.. +. ..++..+|++||..+ .+||||.| ||+ .|.++.|+.+++..|++.+....
T Consensus 297 ~~g~~d~~nlLkp---~L--~~g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~ 368 (758)
T PRK11034 297 SGGQVDAANLIKP---LL--SSGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAH 368 (758)
T ss_pred CCcHHHHHHHHHH---HH--hCCCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhc
Confidence 0011122222221 11 124688899998765 47999999 996 79999999999999998654322
Q ss_pred -CCCCChHhHHHHHHhhCCCCCCHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 010133 413 -ESDLEDETLKELEDVVGKAEMTPADISEVLIKNKRDKCKAVRELLETLK 461 (517)
Q Consensus 413 -~~~~~~~~~~~i~~l~~~~~~spadi~~~l~~~~~~~~~al~~l~~~l~ 461 (517)
...+++..+..+..+ ..-.+..+.-|++|++-+.++..
T Consensus 369 h~v~i~~~al~~a~~l-----------s~ryi~~r~lPdKaidlldea~a 407 (758)
T PRK11034 369 HDVRYTAKAVRAAVEL-----------AVKYINDRHLPDKAIDVIDEAGA 407 (758)
T ss_pred cCCCcCHHHHHHHHHH-----------hhccccCccChHHHHHHHHHHHH
Confidence 223334443333222 22223344557777765555543
No 82
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.56 E-value=2.9e-14 Score=163.35 Aligned_cols=156 Identities=21% Similarity=0.319 Sum_probs=113.5
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh----------CCceEE
Q 010133 198 HPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL----------GYDIYD 267 (517)
Q Consensus 198 ~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l----------~~~i~~ 267 (517)
.|..++.++|.+.....+++.|.+-. +.+++|+||||||||++++++|..+ +++++.
T Consensus 173 r~~~l~~vigr~~ei~~~i~iL~r~~-------------~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~ 239 (857)
T PRK10865 173 EQGKLDPVIGRDEEIRRTIQVLQRRT-------------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 239 (857)
T ss_pred hcCCCCcCCCCHHHHHHHHHHHhcCC-------------cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEE
Confidence 46789999999887666655443322 3479999999999999999999988 789999
Q ss_pred EeeccccC--------hHHHHHHHHhc---cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCC
Q 010133 268 LELTEVHN--------NSELRKLLMKT---SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSV 336 (517)
Q Consensus 268 l~l~~~~~--------~~~L~~lf~~~---~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (517)
++++.+.. +..++.+|... ..++||||||||++++. +. +
T Consensus 240 l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~---~~---------------------------~ 289 (857)
T PRK10865 240 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGA---GK---------------------------A 289 (857)
T ss_pred EehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccC---CC---------------------------C
Confidence 98887632 23578888653 46899999999998521 10 0
Q ss_pred CCCCCchhhHHHHHH-HhhcCCcccCCCceEEEEEeCCCCC-----CChhhhccCCceeeEeccCCCHHHHHHHHHHhcC
Q 010133 337 GGEDGNNSITLSGLL-NFTDGLWSCCGSEKIFVFTTNHIEK-----LDPALLRSGRMDMHIFMSYCSYPALLILLKNYLG 410 (517)
Q Consensus 337 ~~~~~~~~~~ls~LL-n~lDg~~s~~~~~~iiI~TTN~~e~-----LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~ 410 (517)
.+. ...+.+| ..+ ..++..+|++|+..+. +|+||.| ||+ .|.++.|+.+++..+++....
T Consensus 290 ~~~-----~d~~~~lkp~l------~~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~ 355 (857)
T PRK10865 290 DGA-----MDAGNMLKPAL------ARGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKE 355 (857)
T ss_pred ccc-----hhHHHHhcchh------hcCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhh
Confidence 011 1112222 222 1356889999988774 7999999 997 689999999999999887653
No 83
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.56 E-value=1.1e-13 Score=134.70 Aligned_cols=174 Identities=20% Similarity=0.256 Sum_probs=109.2
Q ss_pred ccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeec
Q 010133 195 SFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELT 271 (517)
Q Consensus 195 ~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~ 271 (517)
+...+.+|++++. +..+.+++.+..++.. ..+++++|+||||||||++++++++++ +.+++.++|+
T Consensus 7 ~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~---------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~ 75 (226)
T TIGR03420 7 GLPDDPTFDNFYA--GGNAELLAALRQLAAG---------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA 75 (226)
T ss_pred CCCCchhhcCcCc--CCcHHHHHHHHHHHhc---------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHH
Confidence 3445668899883 2335556666666532 224589999999999999999999887 4788889988
Q ss_pred cccChHHHHHHHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHH
Q 010133 272 EVHNNSELRKLLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLL 351 (517)
Q Consensus 272 ~~~~~~~L~~lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 351 (517)
.+.. ....++.......+|+|||+|.+-. .......+..++
T Consensus 76 ~~~~--~~~~~~~~~~~~~lLvIDdi~~l~~-------------------------------------~~~~~~~L~~~l 116 (226)
T TIGR03420 76 ELAQ--ADPEVLEGLEQADLVCLDDVEAIAG-------------------------------------QPEWQEALFHLY 116 (226)
T ss_pred HHHH--hHHHHHhhcccCCEEEEeChhhhcC-------------------------------------ChHHHHHHHHHH
Confidence 8743 2234454455667999999998610 001123344444
Q ss_pred HhhcCCcccCCCceEEEEEeC-CCCCC---ChhhhccCCc--eeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHH
Q 010133 352 NFTDGLWSCCGSEKIFVFTTN-HIEKL---DPALLRSGRM--DMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELE 425 (517)
Q Consensus 352 n~lDg~~s~~~~~~iiI~TTN-~~e~L---D~ALlRpGR~--d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~ 425 (517)
+.+.. . +.+ +|+|+| .+..+ ++.|.+ |+ ..+|.+++|+.+++..+++.+....+..++.+.+..|.
T Consensus 117 ~~~~~---~--~~~-iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~ 188 (226)
T TIGR03420 117 NRVRE---A--GGR-LLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLL 188 (226)
T ss_pred HHHHH---c--CCe-EEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 43321 1 223 445554 44333 278887 66 47899999999999888887654333333344444443
Q ss_pred H
Q 010133 426 D 426 (517)
Q Consensus 426 ~ 426 (517)
.
T Consensus 189 ~ 189 (226)
T TIGR03420 189 R 189 (226)
T ss_pred H
Confidence 3
No 84
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=8.8e-14 Score=152.13 Aligned_cols=170 Identities=19% Similarity=0.273 Sum_probs=122.6
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC------------
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY------------ 263 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~------------ 263 (517)
...|.+|++|+|.+..++.|.. ++... ..+..|||||||||||||+|+++|+.++.
T Consensus 6 kyRP~~f~eivGq~~i~~~L~~----~i~~~--------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 6 KYRPATFAEVVGQEHVTEPLSS----ALDAG--------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred HhCCCcHHHhcCcHHHHHHHHH----HHHcC--------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 3579999999999887666544 44331 12346999999999999999999998863
Q ss_pred --------------ceEEEeeccccChHHHHHHHHhc------cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCC
Q 010133 264 --------------DIYDLELTEVHNNSELRKLLMKT------SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGN 323 (517)
Q Consensus 264 --------------~i~~l~l~~~~~~~~L~~lf~~~------~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (517)
+++.++.++...-+.++.+.... ...-|++|||+|.+
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~L----------------------- 130 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMV----------------------- 130 (584)
T ss_pred HHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcC-----------------------
Confidence 34455554433445566554332 24569999999986
Q ss_pred CCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHH
Q 010133 324 YYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLI 403 (517)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~ 403 (517)
+....+.||..|+.. ....++|++|+.+++|.++|+. |. .++.|..++.++...
T Consensus 131 -------------------t~~A~NALLK~LEEp----p~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~ 184 (584)
T PRK14952 131 -------------------TTAGFNALLKIVEEP----PEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRA 184 (584)
T ss_pred -------------------CHHHHHHHHHHHhcC----CCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHH
Confidence 223677888888864 3457888888999999999998 75 789999999999988
Q ss_pred HHHHhcCCCCCCCChHhHHHHHH
Q 010133 404 LLKNYLGYEESDLEDETLKELED 426 (517)
Q Consensus 404 l~~~~l~~~~~~~~~~~~~~i~~ 426 (517)
.++.++..++..++...+..|..
T Consensus 185 ~L~~i~~~egi~i~~~al~~Ia~ 207 (584)
T PRK14952 185 LIARICEQEGVVVDDAVYPLVIR 207 (584)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHH
Confidence 88887766655555554444444
No 85
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=7.6e-14 Score=150.58 Aligned_cols=156 Identities=26% Similarity=0.266 Sum_probs=114.3
Q ss_pred cCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccChHHHH-----
Q 010133 206 AIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNNSELR----- 280 (517)
Q Consensus 206 ~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~~~~L~----- 280 (517)
.|.+++|++|++-+.-.... ..... .-++|+||||+|||||+++||..+|..|+.+++..+.++++++
T Consensus 326 YGLekVKeRIlEyLAV~~l~----~~~kG---pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRT 398 (782)
T COG0466 326 YGLEKVKERILEYLAVQKLT----KKLKG---PILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRT 398 (782)
T ss_pred cCchhHHHHHHHHHHHHHHh----ccCCC---cEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccccc
Confidence 46778888887755433322 12211 2477999999999999999999999999999999998877664
Q ss_pred ----------HHHHhcc-CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHH
Q 010133 281 ----------KLLMKTS-SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSG 349 (517)
Q Consensus 281 ----------~lf~~~~-~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 349 (517)
+-+.++. .+-+++|||||.+.. +...---|.
T Consensus 399 YIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~s--------------------------------------s~rGDPaSA 440 (782)
T COG0466 399 YIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGS--------------------------------------SFRGDPASA 440 (782)
T ss_pred ccccCChHHHHHHHHhCCcCCeEEeechhhccC--------------------------------------CCCCChHHH
Confidence 2233333 557899999999720 011123456
Q ss_pred HHHhhcCCccc-----------CCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhc
Q 010133 350 LLNFTDGLWSC-----------CGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYL 409 (517)
Q Consensus 350 LLn~lDg~~s~-----------~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l 409 (517)
||..+|-=..+ .=.++++|+|.|..+.++.+|+. || ..|+++-.+.++...|++.||
T Consensus 441 LLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 441 LLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred HHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhc
Confidence 77777632111 01348999999999999999999 99 579999999999999999997
No 86
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=6.4e-14 Score=152.57 Aligned_cols=170 Identities=17% Similarity=0.308 Sum_probs=122.6
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC-------------
Q 010133 197 KHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY------------- 263 (517)
Q Consensus 197 ~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~------------- 263 (517)
..|.+|++|+|.+..++.+...+. .. ..+..||||||||||||++|+++|..++.
T Consensus 10 ~rP~~f~divGq~~v~~~L~~~i~----~~--------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~ 77 (527)
T PRK14969 10 WRPKSFSELVGQEHVVRALTNALE----QQ--------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCS 77 (527)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHH----cC--------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 478999999999988776654433 21 12347999999999999999999999965
Q ss_pred -----------ceEEEeeccccChHHHHHHHHhcc------CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCC
Q 010133 264 -----------DIYDLELTEVHNNSELRKLLMKTS------SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYE 326 (517)
Q Consensus 264 -----------~i~~l~l~~~~~~~~L~~lf~~~~------~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (517)
+++.++.+.-..-+.++.++.... ...|++|||+|.+
T Consensus 78 ~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~l-------------------------- 131 (527)
T PRK14969 78 ACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHML-------------------------- 131 (527)
T ss_pred HHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccC--------------------------
Confidence 344455443334456777765442 3569999999986
Q ss_pred cccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHH
Q 010133 327 PEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLK 406 (517)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~ 406 (517)
.....+.||..|+.. .+..++|++|+.++++.+.++. |+ ..+.|..++.++....++
T Consensus 132 ----------------s~~a~naLLK~LEep----p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~ 188 (527)
T PRK14969 132 ----------------SKSAFNAMLKTLEEP----PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQ 188 (527)
T ss_pred ----------------CHHHHHHHHHHHhCC----CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHH
Confidence 223567888888874 2446788888889999988887 76 789999999999888888
Q ss_pred HhcCCCCCCCChHhHHHHHHh
Q 010133 407 NYLGYEESDLEDETLKELEDV 427 (517)
Q Consensus 407 ~~l~~~~~~~~~~~~~~i~~l 427 (517)
..+..++...+...+..|.+.
T Consensus 189 ~il~~egi~~~~~al~~la~~ 209 (527)
T PRK14969 189 HILEQENIPFDATALQLLARA 209 (527)
T ss_pred HHHHHcCCCCCHHHHHHHHHH
Confidence 777555444445544444443
No 87
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=8.4e-14 Score=151.31 Aligned_cols=170 Identities=19% Similarity=0.328 Sum_probs=120.4
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC------------
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY------------ 263 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~------------ 263 (517)
...|.+|++++|.+..++.+.+.+. . | ..+.+|||+||||||||++|+++|+.+..
T Consensus 9 KyRP~~F~dIIGQe~iv~~L~~aI~----~-------~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C 76 (605)
T PRK05896 9 KYRPHNFKQIIGQELIKKILVNAIL----N-------N-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSC 76 (605)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH----c-------C-CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 4689999999999988766644321 1 1 12357999999999999999999999853
Q ss_pred ------------ceEEEeeccccChHHHHHHHHhc---c---CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCC
Q 010133 264 ------------DIYDLELTEVHNNSELRKLLMKT---S---SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYY 325 (517)
Q Consensus 264 ------------~i~~l~l~~~~~~~~L~~lf~~~---~---~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (517)
+++.++.++...-..++.+.... + ..-|++|||+|.+-
T Consensus 77 ~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt------------------------ 132 (605)
T PRK05896 77 SVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS------------------------ 132 (605)
T ss_pred HHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC------------------------
Confidence 44555544333445566665433 1 34699999999861
Q ss_pred CcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHH
Q 010133 326 EPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILL 405 (517)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~ 405 (517)
....+.||..|+.. +...++|++|+.+.+|.+++++ |+ ..+.|.+++.++....+
T Consensus 133 ------------------~~A~NaLLKtLEEP----p~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L 187 (605)
T PRK05896 133 ------------------TSAWNALLKTLEEP----PKHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELL 187 (605)
T ss_pred ------------------HHHHHHHHHHHHhC----CCcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHH
Confidence 12456788888764 2347888888889999999998 77 47999999999988888
Q ss_pred HHhcCCCCCCCChHhHHHHHH
Q 010133 406 KNYLGYEESDLEDETLKELED 426 (517)
Q Consensus 406 ~~~l~~~~~~~~~~~~~~i~~ 426 (517)
+..+...+..++...+..+..
T Consensus 188 ~~il~kegi~Is~eal~~La~ 208 (605)
T PRK05896 188 KSIAKKEKIKIEDNAIDKIAD 208 (605)
T ss_pred HHHHHHcCCCCCHHHHHHHHH
Confidence 877655544444444444443
No 88
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.55 E-value=1.5e-13 Score=137.24 Aligned_cols=146 Identities=21% Similarity=0.234 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccChHHHH--------
Q 010133 209 PEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNNSELR-------- 280 (517)
Q Consensus 209 ~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~~~~L~-------- 280 (517)
....+.+++.+..++... +.+||+||||||||++|+++|..+|.+++.++|+.-...+++-
T Consensus 4 t~~~~~l~~~~l~~l~~g-----------~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~ 72 (262)
T TIGR02640 4 TDAVKRVTSRALRYLKSG-----------YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTR 72 (262)
T ss_pred CHHHHHHHHHHHHHHhcC-----------CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccch
Confidence 345667777777777652 4799999999999999999999999999999987643322221
Q ss_pred -------------------------HHHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCC
Q 010133 281 -------------------------KLLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGS 335 (517)
Q Consensus 281 -------------------------~lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (517)
.++.....+.+|+|||||.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~----------------------------------- 117 (262)
T TIGR02640 73 KKVHDQFIHNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRS----------------------------------- 117 (262)
T ss_pred hhHHHHHHHHhhhhhcccceeecCchHHHHHHcCCEEEEcchhhC-----------------------------------
Confidence 01111235679999999985
Q ss_pred CCCCCCchhhHHHHHHHhhcCCc-ccC-----------CCceEEEEEeCCCC-----CCChhhhccCCceeeEeccCCCH
Q 010133 336 VGGEDGNNSITLSGLLNFTDGLW-SCC-----------GSEKIFVFTTNHIE-----KLDPALLRSGRMDMHIFMSYCSY 398 (517)
Q Consensus 336 ~~~~~~~~~~~ls~LLn~lDg~~-s~~-----------~~~~iiI~TTN~~e-----~LD~ALlRpGR~d~~I~~~~p~~ 398 (517)
...+++.|+..|+.-. .-. ..+..||+|+|... .+++||++ || ..+.+++|+.
T Consensus 118 -------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~--R~-~~i~i~~P~~ 187 (262)
T TIGR02640 118 -------KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLD--RL-ITIFMDYPDI 187 (262)
T ss_pred -------CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHh--hc-EEEECCCCCH
Confidence 2335666777775321 000 01345888999753 56899999 98 7899999999
Q ss_pred HHHHHHHHHhcC
Q 010133 399 PALLILLKNYLG 410 (517)
Q Consensus 399 e~~~~l~~~~l~ 410 (517)
+.-..|++...+
T Consensus 188 ~~e~~Il~~~~~ 199 (262)
T TIGR02640 188 DTETAILRAKTD 199 (262)
T ss_pred HHHHHHHHHhhC
Confidence 998889887653
No 89
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.55 E-value=1.1e-13 Score=145.24 Aligned_cols=155 Identities=21% Similarity=0.269 Sum_probs=112.5
Q ss_pred CcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCc----------------
Q 010133 201 TFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYD---------------- 264 (517)
Q Consensus 201 ~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~---------------- 264 (517)
.|++|+|.+..++.+.+.+..... .+...+.+.+.+||||||||+|||++|.++|+.+..+
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~---~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA---DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc---cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 488999999998887666654332 3444555667899999999999999999999987553
Q ss_pred -------eEEEeeccc-cChHHHHHHHHhcc------CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccc
Q 010133 265 -------IYDLELTEV-HNNSELRKLLMKTS------SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMR 330 (517)
Q Consensus 265 -------i~~l~l~~~-~~~~~L~~lf~~~~------~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (517)
++.+..... ..-..++.++.... .+.|+||||+|.+
T Consensus 80 ~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m------------------------------ 129 (394)
T PRK07940 80 LAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRL------------------------------ 129 (394)
T ss_pred hcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhc------------------------------
Confidence 223322211 13455777766542 3469999999987
Q ss_pred cCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHH
Q 010133 331 CGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKN 407 (517)
Q Consensus 331 ~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~ 407 (517)
.....+.||..|+.. ..+.++|++|+.++.|.|++++ |+ ..|.|++|+.++....+..
T Consensus 130 ------------~~~aanaLLk~LEep----~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~ 187 (394)
T PRK07940 130 ------------TERAANALLKAVEEP----PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVR 187 (394)
T ss_pred ------------CHHHHHHHHHHhhcC----CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHH
Confidence 122457788888764 2346777777779999999998 87 7899999999998777763
No 90
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.2e-13 Score=149.77 Aligned_cols=170 Identities=17% Similarity=0.281 Sum_probs=120.5
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC------------
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY------------ 263 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~------------ 263 (517)
...|.+|++|+|.+..++.+...+. .. ..+..||||||||||||++|+++|+.++.
T Consensus 9 KyRP~~f~diiGq~~~v~~L~~~i~----~~--------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (546)
T PRK14957 9 KYRPQSFAEVAGQQHALNSLVHALE----TQ--------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKC 76 (546)
T ss_pred HHCcCcHHHhcCcHHHHHHHHHHHH----cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 3478999999999998776544332 21 12346999999999999999999998864
Q ss_pred ------------ceEEEeeccccChHHHHHHHHhc------cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCC
Q 010133 264 ------------DIYDLELTEVHNNSELRKLLMKT------SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYY 325 (517)
Q Consensus 264 ------------~i~~l~l~~~~~~~~L~~lf~~~------~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (517)
+++.++...-..-..++.++... ..+-|++|||+|.+
T Consensus 77 ~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~l------------------------- 131 (546)
T PRK14957 77 ENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHML------------------------- 131 (546)
T ss_pred HHHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhc-------------------------
Confidence 45555553333344555555432 24579999999986
Q ss_pred CcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHH
Q 010133 326 EPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILL 405 (517)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~ 405 (517)
.....+.||..|+.. .+..++|++|+.+..+.++++. |+ ..++|.+++.++....+
T Consensus 132 -----------------s~~a~naLLK~LEep----p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L 187 (546)
T PRK14957 132 -----------------SKQSFNALLKTLEEP----PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQL 187 (546)
T ss_pred -----------------cHHHHHHHHHHHhcC----CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHH
Confidence 234567888888864 2346677777778889988887 77 78999999999988888
Q ss_pred HHhcCCCCCCCChHhHHHHHH
Q 010133 406 KNYLGYEESDLEDETLKELED 426 (517)
Q Consensus 406 ~~~l~~~~~~~~~~~~~~i~~ 426 (517)
+..+..++...+...+..|..
T Consensus 188 ~~il~~egi~~e~~Al~~Ia~ 208 (546)
T PRK14957 188 KIILAKENINSDEQSLEYIAY 208 (546)
T ss_pred HHHHHHcCCCCCHHHHHHHHH
Confidence 876655554444554444444
No 91
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=1.1e-13 Score=153.27 Aligned_cols=172 Identities=23% Similarity=0.339 Sum_probs=121.5
Q ss_pred ccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCc----------
Q 010133 195 SFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYD---------- 264 (517)
Q Consensus 195 ~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~---------- 264 (517)
....|.+|++|+|.+..++.+...+. .. ..+..||||||||||||++|+++|..+...
T Consensus 10 ~KyRP~~f~dIiGQe~~v~~L~~aI~----~~--------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~ 77 (725)
T PRK07133 10 RKYRPKTFDDIVGQDHIVQTLKNIIK----SN--------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQ 77 (725)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHH----cC--------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchh
Confidence 34689999999999988776655443 21 234579999999999999999999988542
Q ss_pred -----------eEEEeeccccChHHHHHHHHhc------cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCc
Q 010133 265 -----------IYDLELTEVHNNSELRKLLMKT------SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEP 327 (517)
Q Consensus 265 -----------i~~l~l~~~~~~~~L~~lf~~~------~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (517)
++.++..+-.+...++.+.... ....|++|||+|.+
T Consensus 78 ~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~L--------------------------- 130 (725)
T PRK07133 78 ECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHML--------------------------- 130 (725)
T ss_pred HHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhC---------------------------
Confidence 2223322212334466665443 24579999999986
Q ss_pred ccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHH
Q 010133 328 EMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKN 407 (517)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~ 407 (517)
....++.||..|+.. +...++|++|+.+++|.++|+. |+ ..+.|.+++.++....++.
T Consensus 131 ---------------T~~A~NALLKtLEEP----P~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~ 188 (725)
T PRK07133 131 ---------------SKSAFNALLKTLEEP----PKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEF 188 (725)
T ss_pred ---------------CHHHHHHHHHHhhcC----CCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHH
Confidence 123577888888864 2447888888899999999998 87 5899999999998888877
Q ss_pred hcCCCCCCCChHhHHHHHHh
Q 010133 408 YLGYEESDLEDETLKELEDV 427 (517)
Q Consensus 408 ~l~~~~~~~~~~~~~~i~~l 427 (517)
.+...+...+...+..++.+
T Consensus 189 il~kegI~id~eAl~~LA~l 208 (725)
T PRK07133 189 ILEKENISYEKNALKLIAKL 208 (725)
T ss_pred HHHHcCCCCCHHHHHHHHHH
Confidence 66554444444444444443
No 92
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.55 E-value=1.5e-13 Score=141.57 Aligned_cols=173 Identities=17% Similarity=0.278 Sum_probs=113.4
Q ss_pred CceecccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhC-----Cc
Q 010133 190 PWESVSFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLG-----YD 264 (517)
Q Consensus 190 ~w~~~~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~-----~~ 264 (517)
.| +....|.+|+++++.+..++.+.. ++..+ . ..++|||||||||||++|+++|+++. .+
T Consensus 4 ~w--~~ky~P~~~~~~~g~~~~~~~L~~----~~~~~-------~--~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~ 68 (337)
T PRK12402 4 LW--TEKYRPALLEDILGQDEVVERLSR----AVDSP-------N--LPHLLVQGPPGSGKTAAVRALARELYGDPWENN 68 (337)
T ss_pred ch--HHhhCCCcHHHhcCCHHHHHHHHH----HHhCC-------C--CceEEEECCCCCCHHHHHHHHHHHhcCcccccc
Confidence 46 456789999999998887665544 44331 1 12699999999999999999999984 34
Q ss_pred eEEEeeccccC--------------------------hHHHHHHHHhc-------cCCcEEEEccchhhhccccccccCC
Q 010133 265 IYDLELTEVHN--------------------------NSELRKLLMKT-------SSKSIIVIEDIDCSISLSNRNKRSN 311 (517)
Q Consensus 265 i~~l~l~~~~~--------------------------~~~L~~lf~~~-------~~~sII~iDdID~~~~~~~~~~~~~ 311 (517)
+..++++.+.. ...++.+.... ..+.+|+|||+|.+-
T Consensus 69 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~---------- 138 (337)
T PRK12402 69 FTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR---------- 138 (337)
T ss_pred eEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC----------
Confidence 66777765310 01122222111 235699999999761
Q ss_pred CCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeE
Q 010133 312 GSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHI 391 (517)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I 391 (517)
......|+..++... ....+|++|+.+..+.++|.. |+ ..+
T Consensus 139 --------------------------------~~~~~~L~~~le~~~----~~~~~Il~~~~~~~~~~~L~s--r~-~~v 179 (337)
T PRK12402 139 --------------------------------EDAQQALRRIMEQYS----RTCRFIIATRQPSKLIPPIRS--RC-LPL 179 (337)
T ss_pred --------------------------------HHHHHHHHHHHHhcc----CCCeEEEEeCChhhCchhhcC--Cc-eEE
Confidence 112334555555432 123466677777788888887 65 578
Q ss_pred eccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHH
Q 010133 392 FMSYCSYPALLILLKNYLGYEESDLEDETLKELED 426 (517)
Q Consensus 392 ~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~ 426 (517)
.+.+|+.+++..+++..+...+..++.+.++.+..
T Consensus 180 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~ 214 (337)
T PRK12402 180 FFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAY 214 (337)
T ss_pred EecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999887766555555555544444
No 93
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.54 E-value=3.1e-14 Score=163.11 Aligned_cols=197 Identities=19% Similarity=0.240 Sum_probs=127.8
Q ss_pred CCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh----------CCceEEEe
Q 010133 200 STFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL----------GYDIYDLE 269 (517)
Q Consensus 200 ~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l----------~~~i~~l~ 269 (517)
..++.++|.++..+.+++.+... .+++++|+||||||||++|+++|..+ +.+++.++
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~r~-------------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILGRR-------------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHccc-------------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 35788999998877777654432 24589999999999999999999987 47899999
Q ss_pred ecccc--------ChHHHHHHHHhc--cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCC
Q 010133 270 LTEVH--------NNSELRKLLMKT--SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGE 339 (517)
Q Consensus 270 l~~~~--------~~~~L~~lf~~~--~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (517)
++.+. .+..++.+|..+ ..++||||||||.+++..+ ..+
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~------------------------------~~g- 291 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGA------------------------------AEG- 291 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCC------------------------------CCC-
Confidence 87653 134688888765 3579999999999852110 000
Q ss_pred CCchhhHHHHHH-HhhcCCcccCCCceEEEEEeCCCC-----CCChhhhccCCceeeEeccCCCHHHHHHHHHHhcC---
Q 010133 340 DGNNSITLSGLL-NFTDGLWSCCGSEKIFVFTTNHIE-----KLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLG--- 410 (517)
Q Consensus 340 ~~~~~~~ls~LL-n~lDg~~s~~~~~~iiI~TTN~~e-----~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~--- 410 (517)
....+.+| ..+. .++..+|++|+..+ ..||+|.| ||. .|.+..|+.++...|++....
T Consensus 292 ----~~~~a~lLkp~l~------rg~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e 358 (821)
T CHL00095 292 ----AIDAANILKPALA------RGELQCIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYE 358 (821)
T ss_pred ----cccHHHHhHHHHh------CCCcEEEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHH
Confidence 01222333 2222 24577888887664 36999999 996 589999999988888765321
Q ss_pred -CCCCCCChHhHHHHHHhhCCCCCCHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q 010133 411 -YEESDLEDETLKELEDVVGKAEMTPADISEVLIKNKRDKCKAVRELLETLKVKA 464 (517)
Q Consensus 411 -~~~~~~~~~~~~~i~~l~~~~~~spadi~~~l~~~~~~~~~al~~l~~~l~~~~ 464 (517)
.....++++.+..+..+. .+| ...+.-|++|++-+.++....+
T Consensus 359 ~~~~v~i~deal~~i~~ls--~~y---------i~~r~lPdkaidlld~a~a~~~ 402 (821)
T CHL00095 359 KHHNLSISDKALEAAAKLS--DQY---------IADRFLPDKAIDLLDEAGSRVR 402 (821)
T ss_pred HHcCCCCCHHHHHHHHHHh--hcc---------CccccCchHHHHHHHHHHHHHH
Confidence 112223445554444432 111 1234456677665555554443
No 94
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.2e-13 Score=150.89 Aligned_cols=172 Identities=18% Similarity=0.250 Sum_probs=120.8
Q ss_pred ccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCc----------
Q 010133 195 SFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYD---------- 264 (517)
Q Consensus 195 ~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~---------- 264 (517)
....|.+|++|+|.+..++.|.+ ++... .....||||||||||||++|+++|+.++..
T Consensus 8 ~KyRP~sf~dIiGQe~v~~~L~~----ai~~~--------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~ 75 (624)
T PRK14959 8 ARYRPQTFAEVAGQETVKAILSR----AAQEN--------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNT 75 (624)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHH----HHHcC--------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcc
Confidence 34689999999999887655543 33321 123479999999999999999999999753
Q ss_pred --------------eEEEeeccccChHHHHHHH---Hhc---cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCC
Q 010133 265 --------------IYDLELTEVHNNSELRKLL---MKT---SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNY 324 (517)
Q Consensus 265 --------------i~~l~l~~~~~~~~L~~lf---~~~---~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (517)
++.++...-..-+.++.+. ... ....||||||+|.+
T Consensus 76 C~sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~L------------------------ 131 (624)
T PRK14959 76 CEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHML------------------------ 131 (624)
T ss_pred cHHHHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhC------------------------
Confidence 4555443222334444443 222 24579999999987
Q ss_pred CCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHH
Q 010133 325 YEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLIL 404 (517)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l 404 (517)
....++.||..|+.. ....++|++||.+..+.+.|+. |+ .+|.|..++.++...+
T Consensus 132 ------------------t~~a~naLLk~LEEP----~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~ 186 (624)
T PRK14959 132 ------------------TREAFNALLKTLEEP----PARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAH 186 (624)
T ss_pred ------------------CHHHHHHHHHHhhcc----CCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHH
Confidence 123467788888764 2347888899999999999888 87 5789999999999888
Q ss_pred HHHhcCCCCCCCChHhHHHHHHh
Q 010133 405 LKNYLGYEESDLEDETLKELEDV 427 (517)
Q Consensus 405 ~~~~l~~~~~~~~~~~~~~i~~l 427 (517)
++..+..++..++.+.+..|+++
T Consensus 187 L~~il~~egi~id~eal~lIA~~ 209 (624)
T PRK14959 187 LTKVLGREGVDYDPAAVRLIARR 209 (624)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHH
Confidence 88776655544555555555443
No 95
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.54 E-value=9.6e-14 Score=151.54 Aligned_cols=186 Identities=18% Similarity=0.283 Sum_probs=124.3
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh----------CCce
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL----------GYDI 265 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l----------~~~i 265 (517)
...|.+|++++|.+...+.+...+ .. +.+.++|||||||||||++|+++.+++ +.++
T Consensus 58 ~~rp~~f~~iiGqs~~i~~l~~al----~~---------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~f 124 (531)
T TIGR02902 58 KTRPKSFDEIIGQEEGIKALKAAL----CG---------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAF 124 (531)
T ss_pred hhCcCCHHHeeCcHHHHHHHHHHH----hC---------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCE
Confidence 467899999999998877765421 11 224589999999999999999998753 3678
Q ss_pred EEEeecccc-ChHHHH-HHH--------------H------------hccCCcEEEEccchhhhccccccccCCCCCCCC
Q 010133 266 YDLELTEVH-NNSELR-KLL--------------M------------KTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRG 317 (517)
Q Consensus 266 ~~l~l~~~~-~~~~L~-~lf--------------~------------~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~ 317 (517)
+.++|+... ++..+. .++ . ......+|||||||.+-
T Consensus 125 i~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~---------------- 188 (531)
T TIGR02902 125 VEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELH---------------- 188 (531)
T ss_pred EEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCC----------------
Confidence 999987421 111111 111 0 01235799999999871
Q ss_pred CCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCC--------cc-----------------cCCCceEEEEEeC
Q 010133 318 NCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGL--------WS-----------------CCGSEKIFVFTTN 372 (517)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~--------~s-----------------~~~~~~iiI~TTN 372 (517)
...++.||..|+.- .+ ....-++|++|||
T Consensus 189 --------------------------~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~ 242 (531)
T TIGR02902 189 --------------------------PVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTR 242 (531)
T ss_pred --------------------------HHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecC
Confidence 22334444444210 00 0112367778889
Q ss_pred CCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhhCCCCCCHHHHHHHHH
Q 010133 373 HIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDVVGKAEMTPADISEVLI 443 (517)
Q Consensus 373 ~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~~~~~~spadi~~~l~ 443 (517)
.++.|+|+|++ |+ ..|.|++++.+++..++++++...+..++++.++.|....+ +.+++.+++.
T Consensus 243 ~p~~L~paLrs--R~-~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~----n~Rel~nll~ 306 (531)
T TIGR02902 243 NPEEIPPALRS--RC-VEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYAS----NGREAVNIVQ 306 (531)
T ss_pred CcccCChHHhh--hh-heeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh----hHHHHHHHHH
Confidence 99999999999 88 57889999999999999998876665666666666655432 4456555544
No 96
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.54 E-value=2.6e-13 Score=143.16 Aligned_cols=100 Identities=22% Similarity=0.275 Sum_probs=69.3
Q ss_pred cc-cccCChHHHHHHHHHHHHHHhchhHHHh--hCC-CCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccC--
Q 010133 202 FD-TLAIDPEKKIEIMEDLKDFANGMSFYQK--TGR-AWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHN-- 275 (517)
Q Consensus 202 f~-tv~~~~~~k~~i~~~l~~fl~~~~~y~~--~G~-~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~-- 275 (517)
++ .|+|.+..|+.+...+....++-..... -+. ..+.++||+||||||||++|+++|..++.+++.++++.+..
T Consensus 69 L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~g 148 (412)
T PRK05342 69 LDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAG 148 (412)
T ss_pred HhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCC
Confidence 44 4789999988886655443332111000 011 23568999999999999999999999999999999987632
Q ss_pred ------hHHHHHHHHhc------cCCcEEEEccchhhh
Q 010133 276 ------NSELRKLLMKT------SSKSIIVIEDIDCSI 301 (517)
Q Consensus 276 ------~~~L~~lf~~~------~~~sII~iDdID~~~ 301 (517)
...+..++... ..++||||||||.+.
T Consensus 149 yvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~ 186 (412)
T PRK05342 149 YVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIA 186 (412)
T ss_pred cccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhc
Confidence 12234444322 367999999999973
No 97
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=2.1e-13 Score=146.54 Aligned_cols=157 Identities=25% Similarity=0.313 Sum_probs=109.1
Q ss_pred cCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccChHHH------
Q 010133 206 AIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNNSEL------ 279 (517)
Q Consensus 206 ~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~~~~L------ 279 (517)
.|.+++|++|++.+.- ... +|-....-++|+||||.||||++++||..+|..|+.+++..+.+.+++
T Consensus 414 Ygm~dVKeRILEfiAV----~kL---rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRT 486 (906)
T KOG2004|consen 414 YGMEDVKERILEFIAV----GKL---RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRT 486 (906)
T ss_pred cchHHHHHHHHHHHHH----Hhh---cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccccee
Confidence 4667788877764432 111 111222347899999999999999999999999999999888665444
Q ss_pred ---------HHHHHhcc-CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHH
Q 010133 280 ---------RKLLMKTS-SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSG 349 (517)
Q Consensus 280 ---------~~lf~~~~-~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 349 (517)
.+.+.... .+-+++|||||.+- .+- .+ ---+.
T Consensus 487 YVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG--~g~---------------------------------qG---DPasA 528 (906)
T KOG2004|consen 487 YVGAMPGKIIQCLKKVKTENPLILIDEVDKLG--SGH---------------------------------QG---DPASA 528 (906)
T ss_pred eeccCChHHHHHHHhhCCCCceEEeehhhhhC--CCC---------------------------------CC---ChHHH
Confidence 33344433 56789999999972 000 01 11234
Q ss_pred HHHhhcCCccc-----------CCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcC
Q 010133 350 LLNFTDGLWSC-----------CGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLG 410 (517)
Q Consensus 350 LLn~lDg~~s~-----------~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~ 410 (517)
||..||-=..+ .-..+++|+|.|..+.|+|+|+. || ..|+++-...++...|+++||-
T Consensus 529 LLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 529 LLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred HHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhhh
Confidence 44444421110 01348999999999999999999 99 4689999999999999999983
No 98
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.53 E-value=3.4e-13 Score=131.62 Aligned_cols=171 Identities=19% Similarity=0.238 Sum_probs=106.5
Q ss_pred cccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEee
Q 010133 194 VSFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLEL 270 (517)
Q Consensus 194 ~~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l 270 (517)
++...|.+|++++.... +.++..+..+.. +....++++|+||||||||+|++++++++ +.+++.+++
T Consensus 9 ~~~~~~~~~d~f~~~~~--~~~~~~l~~~~~--------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~ 78 (227)
T PRK08903 9 LGPPPPPTFDNFVAGEN--AELVARLRELAA--------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA 78 (227)
T ss_pred CCCCChhhhcccccCCc--HHHHHHHHHHHh--------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh
Confidence 34556778999873332 234444555443 22334689999999999999999999876 678888888
Q ss_pred ccccChHHHHHHHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHH
Q 010133 271 TEVHNNSELRKLLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGL 350 (517)
Q Consensus 271 ~~~~~~~~L~~lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 350 (517)
..... .+.......+|+|||+|.+- ......+..+
T Consensus 79 ~~~~~------~~~~~~~~~~liiDdi~~l~---------------------------------------~~~~~~L~~~ 113 (227)
T PRK08903 79 ASPLL------AFDFDPEAELYAVDDVERLD---------------------------------------DAQQIALFNL 113 (227)
T ss_pred HHhHH------HHhhcccCCEEEEeChhhcC---------------------------------------chHHHHHHHH
Confidence 76521 12334456899999999861 1122334444
Q ss_pred HHhhcCCcccCCCceEEEEEeCCCC---CCChhhhccCCc--eeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHH
Q 010133 351 LNFTDGLWSCCGSEKIFVFTTNHIE---KLDPALLRSGRM--DMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELE 425 (517)
Q Consensus 351 Ln~lDg~~s~~~~~~iiI~TTN~~e---~LD~ALlRpGR~--d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~ 425 (517)
++.+.. .+..++|+|++.+. .+.+.|.. |+ ...|.+++|+.+++..+++.+....+..++++.++.|.
T Consensus 114 ~~~~~~-----~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~ 186 (227)
T PRK08903 114 FNRVRA-----HGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLL 186 (227)
T ss_pred HHHHHH-----cCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 443322 12345666665432 35677886 66 57899999998888777776554333334444444443
Q ss_pred H
Q 010133 426 D 426 (517)
Q Consensus 426 ~ 426 (517)
.
T Consensus 187 ~ 187 (227)
T PRK08903 187 T 187 (227)
T ss_pred H
Confidence 3
No 99
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=1.8e-13 Score=150.65 Aligned_cols=170 Identities=18% Similarity=0.282 Sum_probs=122.5
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC------------
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY------------ 263 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~------------ 263 (517)
...|.+|++|+|.+..++.+.+.+. . | ..+..||||||||||||++|+++|+.++.
T Consensus 9 k~RP~~f~~iiGq~~v~~~L~~~i~----~-------~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c 76 (576)
T PRK14965 9 KYRPQTFSDLTGQEHVSRTLQNAID----T-------G-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC 76 (576)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHH----c-------C-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc
Confidence 3479999999999988766655433 2 1 23457999999999999999999999864
Q ss_pred ------------ceEEEeeccccChHHHHHHHHhc---c---CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCC
Q 010133 264 ------------DIYDLELTEVHNNSELRKLLMKT---S---SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYY 325 (517)
Q Consensus 264 ------------~i~~l~l~~~~~~~~L~~lf~~~---~---~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (517)
+++.++..+...-++++.+.... + ..-|++|||+|.+
T Consensus 77 ~~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~L------------------------- 131 (576)
T PRK14965 77 PPCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHML------------------------- 131 (576)
T ss_pred HHHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhC-------------------------
Confidence 24445544333445666665543 2 3469999999986
Q ss_pred CcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHH
Q 010133 326 EPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILL 405 (517)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~ 405 (517)
+....+.||..|+.. ....++|++||.+++|.+.|+. |+ ..+.|..++.++....+
T Consensus 132 -----------------t~~a~naLLk~LEep----p~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L 187 (576)
T PRK14965 132 -----------------STNAFNALLKTLEEP----PPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRL 187 (576)
T ss_pred -----------------CHHHHHHHHHHHHcC----CCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHH
Confidence 233567888888864 2347888899999999999998 76 57899999999988888
Q ss_pred HHhcCCCCCCCChHhHHHHHH
Q 010133 406 KNYLGYEESDLEDETLKELED 426 (517)
Q Consensus 406 ~~~l~~~~~~~~~~~~~~i~~ 426 (517)
..++..++..++...+..|.+
T Consensus 188 ~~i~~~egi~i~~~al~~la~ 208 (576)
T PRK14965 188 RYIADQEGISISDAALALVAR 208 (576)
T ss_pred HHHHHHhCCCCCHHHHHHHHH
Confidence 877765555554544444433
No 100
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=6.2e-13 Score=142.38 Aligned_cols=170 Identities=18% Similarity=0.238 Sum_probs=117.8
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC-------------
Q 010133 197 KHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY------------- 263 (517)
Q Consensus 197 ~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~------------- 263 (517)
..|.+|++|+|.+..+..+.+.+ +.. ..+..||||||||||||++|+++|+.+..
T Consensus 11 yRP~~~~diiGq~~~v~~L~~~i----~~~--------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c 78 (451)
T PRK06305 11 YRPQTFSEILGQDAVVAVLKNAL----RFN--------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQC 78 (451)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHH----HcC--------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCccc
Confidence 57899999999998866554433 321 23457999999999999999999998853
Q ss_pred ------------ceEEEeeccccChHHHHHHHHhc------cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCC
Q 010133 264 ------------DIYDLELTEVHNNSELRKLLMKT------SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYY 325 (517)
Q Consensus 264 ------------~i~~l~l~~~~~~~~L~~lf~~~------~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (517)
+++.++.....+-+.++.+.... ..+.||+|||+|.+-
T Consensus 79 ~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt------------------------ 134 (451)
T PRK06305 79 ASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT------------------------ 134 (451)
T ss_pred HHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC------------------------
Confidence 34444432222234454443222 357899999999861
Q ss_pred CcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHH
Q 010133 326 EPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILL 405 (517)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~ 405 (517)
....+.||..|+.. .+..++|++||.+.+|.++|.. |+ ..++|..++.++....+
T Consensus 135 ------------------~~~~n~LLk~lEep----~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L 189 (451)
T PRK06305 135 ------------------KEAFNSLLKTLEEP----PQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKL 189 (451)
T ss_pred ------------------HHHHHHHHHHhhcC----CCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHH
Confidence 22457788888764 2346788888999999999998 77 47899999999988888
Q ss_pred HHhcCCCCCCCChHhHHHHHHh
Q 010133 406 KNYLGYEESDLEDETLKELEDV 427 (517)
Q Consensus 406 ~~~l~~~~~~~~~~~~~~i~~l 427 (517)
+..+...+..++.+.+..|...
T Consensus 190 ~~~~~~eg~~i~~~al~~L~~~ 211 (451)
T PRK06305 190 ALIAKQEGIETSREALLPIARA 211 (451)
T ss_pred HHHHHHcCCCCCHHHHHHHHHH
Confidence 7766544444444444444443
No 101
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=7.2e-13 Score=145.70 Aligned_cols=170 Identities=19% Similarity=0.311 Sum_probs=122.1
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCce----------
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDI---------- 265 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i---------- 265 (517)
.+.|.+|++|+|.+..++.+.+.+. . | ..+.+||||||||+|||++|+++|+.+++..
T Consensus 17 KyRP~~f~dliGq~~~v~~L~~~~~----~-------g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~ 84 (598)
T PRK09111 17 KYRPQTFDDLIGQEAMVRTLTNAFE----T-------G-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID 84 (598)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHH----c-------C-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc
Confidence 4689999999999988776655332 1 1 1245799999999999999999999986532
Q ss_pred -------------------EEEeeccccChHHHHHHHHhcc------CCcEEEEccchhhhccccccccCCCCCCCCCCC
Q 010133 266 -------------------YDLELTEVHNNSELRKLLMKTS------SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCG 320 (517)
Q Consensus 266 -------------------~~l~l~~~~~~~~L~~lf~~~~------~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~ 320 (517)
+.++..+...-..++.++.... ..-||||||+|.+
T Consensus 85 ~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~L-------------------- 144 (598)
T PRK09111 85 LCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHML-------------------- 144 (598)
T ss_pred cCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhC--------------------
Confidence 2222222223456777765432 4579999999986
Q ss_pred CCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHH
Q 010133 321 NGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPA 400 (517)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~ 400 (517)
+....+.||..|+.. ....++|++|+.++++.+.++. |+ ..+.|..++.++
T Consensus 145 ----------------------s~~a~naLLKtLEeP----p~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~e 195 (598)
T PRK09111 145 ----------------------STAAFNALLKTLEEP----PPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADV 195 (598)
T ss_pred ----------------------CHHHHHHHHHHHHhC----CCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHH
Confidence 223577888888764 2346788888888999999887 77 679999999999
Q ss_pred HHHHHHHhcCCCCCCCChHhHHHHHH
Q 010133 401 LLILLKNYLGYEESDLEDETLKELED 426 (517)
Q Consensus 401 ~~~l~~~~l~~~~~~~~~~~~~~i~~ 426 (517)
....++..+..++..++.+.+..|..
T Consensus 196 l~~~L~~i~~kegi~i~~eAl~lIa~ 221 (598)
T PRK09111 196 LAAHLSRIAAKEGVEVEDEALALIAR 221 (598)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 98888888766665555554444444
No 102
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.51 E-value=2.1e-13 Score=146.47 Aligned_cols=194 Identities=18% Similarity=0.304 Sum_probs=124.2
Q ss_pred ccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh-----CCceEEEe
Q 010133 195 SFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL-----GYDIYDLE 269 (517)
Q Consensus 195 ~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l-----~~~i~~l~ 269 (517)
.+.+..+|++++..+.... ....+..+...+ |..+ ++++||||||||||+|++|+|+++ +..++.++
T Consensus 114 ~l~~~~tfd~fv~g~~n~~-a~~~~~~~~~~~------~~~~-~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 114 PLNPKYTFDNFVVGKSNRL-AHAAALAVAENP------GKAY-NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CCCCCCcccccccCCCcHH-HHHHHHHHHhCc------CccC-CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 3455668999764443322 344455554432 2222 479999999999999999999998 56688888
Q ss_pred eccccCh-------HHHHHHHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCc
Q 010133 270 LTEVHNN-------SELRKLLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGN 342 (517)
Q Consensus 270 l~~~~~~-------~~L~~lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (517)
+..+... .....+........+|+|||||.+..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~---------------------------------------- 225 (450)
T PRK00149 186 SEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAG---------------------------------------- 225 (450)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcC----------------------------------------
Confidence 7765211 11122333445678999999998620
Q ss_pred hhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCC---CChhhhccCCce--eeEeccCCCHHHHHHHHHHhcCCCCCCCC
Q 010133 343 NSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEK---LDPALLRSGRMD--MHIFMSYCSYPALLILLKNYLGYEESDLE 417 (517)
Q Consensus 343 ~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~---LD~ALlRpGR~d--~~I~~~~p~~e~~~~l~~~~l~~~~~~~~ 417 (517)
...+...|+..++.+... +..+||.++..|.. ++++|.. ||. ..+.+.+|+.+++..+++..+...+..++
T Consensus 226 ~~~~~~~l~~~~n~l~~~--~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~ 301 (450)
T PRK00149 226 KERTQEEFFHTFNALHEA--GKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLP 301 (450)
T ss_pred CHHHHHHHHHHHHHHHHC--CCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 011233445544444332 22455544445444 6789988 886 58999999999999999998876665667
Q ss_pred hHhHHHHHHhhCCCCCCHHHHHHHHH
Q 010133 418 DETLKELEDVVGKAEMTPADISEVLI 443 (517)
Q Consensus 418 ~~~~~~i~~l~~~~~~spadi~~~l~ 443 (517)
++.++.|++. ..=+.+++.+.+.
T Consensus 302 ~e~l~~ia~~---~~~~~R~l~~~l~ 324 (450)
T PRK00149 302 DEVLEFIAKN---ITSNVRELEGALN 324 (450)
T ss_pred HHHHHHHHcC---cCCCHHHHHHHHH
Confidence 7777777664 3334566655554
No 103
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=3e-13 Score=142.93 Aligned_cols=171 Identities=15% Similarity=0.268 Sum_probs=117.8
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCc-----------
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYD----------- 264 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~----------- 264 (517)
...|.+|++|+|.+..++.+...+ .. | ..+..||||||||||||++|+++|+.+...
T Consensus 9 k~RP~~~~eiiGq~~~~~~L~~~~----~~-------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~ 76 (397)
T PRK14955 9 KYRPKKFADITAQEHITRTIQNSL----RM-------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQE 76 (397)
T ss_pred hcCCCcHhhccChHHHHHHHHHHH----Hh-------C-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccccc
Confidence 357999999999998877654433 22 1 123479999999999999999999999652
Q ss_pred ---------------------eEEEeeccccChHHHHHHHHhc---c---CCcEEEEccchhhhccccccccCCCCCCCC
Q 010133 265 ---------------------IYDLELTEVHNNSELRKLLMKT---S---SKSIIVIEDIDCSISLSNRNKRSNGSGSRG 317 (517)
Q Consensus 265 ---------------------i~~l~l~~~~~~~~L~~lf~~~---~---~~sII~iDdID~~~~~~~~~~~~~~~~~~~ 317 (517)
++.++......-+.++.+.... + ..-||||||+|.+-
T Consensus 77 ~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~---------------- 140 (397)
T PRK14955 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS---------------- 140 (397)
T ss_pred CCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC----------------
Confidence 3333332222345566665444 2 45799999999861
Q ss_pred CCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCC
Q 010133 318 NCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCS 397 (517)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~ 397 (517)
....+.||..++.. ....++|++|+.+.++-++|.. |. ..++|.+++
T Consensus 141 --------------------------~~~~~~LLk~LEep----~~~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~ 187 (397)
T PRK14955 141 --------------------------IAAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIP 187 (397)
T ss_pred --------------------------HHHHHHHHHHHhcC----CCCeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCC
Confidence 22456778887754 2346777777888899899987 66 478999999
Q ss_pred HHHHHHHHHHhcCCCCCCCChHhHHHHHHh
Q 010133 398 YPALLILLKNYLGYEESDLEDETLKELEDV 427 (517)
Q Consensus 398 ~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l 427 (517)
.++....++..+...+..++++.+..|...
T Consensus 188 ~~ei~~~l~~~~~~~g~~i~~~al~~l~~~ 217 (397)
T PRK14955 188 LEEIQQQLQGICEAEGISVDADALQLIGRK 217 (397)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 999888888776555544555555444443
No 104
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.50 E-value=9.9e-13 Score=125.61 Aligned_cols=179 Identities=22% Similarity=0.305 Sum_probs=142.0
Q ss_pred CceecccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceE
Q 010133 190 PWESVSFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIY 266 (517)
Q Consensus 190 ~w~~~~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~ 266 (517)
....++..+|..+.+++|.+.+|+.+++....|+... +...+||+|..|||||||++|+-+++ +..++
T Consensus 47 ~L~pv~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~---------pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLV 117 (287)
T COG2607 47 YLEPVPDPDPIDLADLVGVDRQKEALVRNTEQFAEGL---------PANNVLLWGARGTGKSSLVKALLNEYADEGLRLV 117 (287)
T ss_pred cccCCCCCCCcCHHHHhCchHHHHHHHHHHHHHHcCC---------cccceEEecCCCCChHHHHHHHHHHHHhcCCeEE
Confidence 3445667778899999999999999999999999863 23589999999999999999998877 67788
Q ss_pred EEeeccccChHHHHHHHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhH
Q 010133 267 DLELTEVHNNSELRKLLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSIT 346 (517)
Q Consensus 267 ~l~l~~~~~~~~L~~lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (517)
.|+-.++.+-..|..++...+.+-|||+||+-- + .....
T Consensus 118 EV~k~dl~~Lp~l~~~Lr~~~~kFIlFcDDLSF--e---------------------------------------~gd~~ 156 (287)
T COG2607 118 EVDKEDLATLPDLVELLRARPEKFILFCDDLSF--E---------------------------------------EGDDA 156 (287)
T ss_pred EEcHHHHhhHHHHHHHHhcCCceEEEEecCCCC--C---------------------------------------CCchH
Confidence 888888877778888888899999999999853 0 01224
Q ss_pred HHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhh--------------------ccCCceeeEeccCCCHHHHHHHHH
Q 010133 347 LSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALL--------------------RSGRMDMHIFMSYCSYPALLILLK 406 (517)
Q Consensus 347 ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALl--------------------RpGR~d~~I~~~~p~~e~~~~l~~ 406 (517)
...|-..|||-......+++|.+|+|+...|++-.. =.-||+.-+.|.+|+.++..+|+.
T Consensus 157 yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~ 236 (287)
T COG2607 157 YKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVD 236 (287)
T ss_pred HHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHH
Confidence 556777889877766788999999998765542221 123999999999999999999999
Q ss_pred HhcCCCCCCCCh
Q 010133 407 NYLGYEESDLED 418 (517)
Q Consensus 407 ~~l~~~~~~~~~ 418 (517)
+|....+.+.++
T Consensus 237 ~~a~~~~l~~~~ 248 (287)
T COG2607 237 HYAKHFGLDISD 248 (287)
T ss_pred HHHHHcCCCCCH
Confidence 998766655544
No 105
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=4.9e-13 Score=144.14 Aligned_cols=171 Identities=19% Similarity=0.294 Sum_probs=119.4
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC------------
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY------------ 263 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~------------ 263 (517)
...|.+|++++|.+.....+.+.+. .. ..+..||||||||||||++|+++|..++.
T Consensus 9 kyRP~~f~diiGq~~i~~~L~~~i~----~~--------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c 76 (486)
T PRK14953 9 KYRPKFFKEVIGQEIVVRILKNAVK----LQ--------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC 76 (486)
T ss_pred hhCCCcHHHccChHHHHHHHHHHHH----cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc
Confidence 4579999999999988766654442 21 12347999999999999999999998863
Q ss_pred ------------ceEEEeeccccChHHHHHHHHh---cc---CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCC
Q 010133 264 ------------DIYDLELTEVHNNSELRKLLMK---TS---SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYY 325 (517)
Q Consensus 264 ------------~i~~l~l~~~~~~~~L~~lf~~---~~---~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (517)
+++.++.++-..-..++.+... .+ .+.|++|||+|.+-
T Consensus 77 ~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt------------------------ 132 (486)
T PRK14953 77 ENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT------------------------ 132 (486)
T ss_pred HHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC------------------------
Confidence 2344444332233445555433 22 45799999999761
Q ss_pred CcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHH
Q 010133 326 EPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILL 405 (517)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~ 405 (517)
...++.||..++.. ....++|++|+.++.+.++|.+ |+ ..+.|.+++.++....+
T Consensus 133 ------------------~~a~naLLk~LEep----p~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L 187 (486)
T PRK14953 133 ------------------KEAFNALLKTLEEP----PPRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYL 187 (486)
T ss_pred ------------------HHHHHHHHHHHhcC----CCCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHH
Confidence 22456778887764 2346777788888899999988 76 47999999999999888
Q ss_pred HHhcCCCCCCCChHhHHHHHHh
Q 010133 406 KNYLGYEESDLEDETLKELEDV 427 (517)
Q Consensus 406 ~~~l~~~~~~~~~~~~~~i~~l 427 (517)
+.++...+...++..+..|+..
T Consensus 188 ~~i~k~egi~id~~al~~La~~ 209 (486)
T PRK14953 188 KRICNEEKIEYEEKALDLLAQA 209 (486)
T ss_pred HHHHHHcCCCCCHHHHHHHHHH
Confidence 8877665555555555555443
No 106
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.50 E-value=1.5e-13 Score=157.89 Aligned_cols=157 Identities=18% Similarity=0.256 Sum_probs=110.3
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh----------CCceEE
Q 010133 198 HPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL----------GYDIYD 267 (517)
Q Consensus 198 ~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l----------~~~i~~ 267 (517)
.|..++.++|.+.....+++.+.+ ..+.+++|+||||||||++++++|..+ +++++.
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~ 234 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA 234 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence 566899999988875555554322 123578999999999999999999986 788999
Q ss_pred EeeccccC--------hHHHHHHHHhc---cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCC
Q 010133 268 LELTEVHN--------NSELRKLLMKT---SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSV 336 (517)
Q Consensus 268 l~l~~~~~--------~~~L~~lf~~~---~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (517)
++++.+.. +..++.+|... ..++||||||||.++.. +. .
T Consensus 235 l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~---g~---------------------------~ 284 (852)
T TIGR03346 235 LDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGA---GK---------------------------A 284 (852)
T ss_pred eeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcC---CC---------------------------C
Confidence 98877631 23577777654 36899999999998521 00 0
Q ss_pred CCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCC-----CCChhhhccCCceeeEeccCCCHHHHHHHHHHhcC
Q 010133 337 GGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIE-----KLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLG 410 (517)
Q Consensus 337 ~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e-----~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~ 410 (517)
.+ .....+-|...+ ..+...+|++||..+ .+|+||.| ||. .|.++.|+.+++..|++.+..
T Consensus 285 ~~----~~d~~~~Lk~~l------~~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~ 350 (852)
T TIGR03346 285 EG----AMDAGNMLKPAL------ARGELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKE 350 (852)
T ss_pred cc----hhHHHHHhchhh------hcCceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHH
Confidence 00 111112222222 124578888888764 37999999 996 589999999999999887643
No 107
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.50 E-value=9.1e-13 Score=134.69 Aligned_cols=175 Identities=20% Similarity=0.244 Sum_probs=116.3
Q ss_pred CCceecccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhC-----C
Q 010133 189 HPWESVSFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLG-----Y 263 (517)
Q Consensus 189 ~~w~~~~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~-----~ 263 (517)
..| +....|++|+++++.++.++.+.. +++.. .. .++|||||||||||++++++++.+. .
T Consensus 5 ~~w--~~kyrP~~~~~~~g~~~~~~~l~~----~i~~~------~~---~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~ 69 (319)
T PRK00440 5 EIW--VEKYRPRTLDEIVGQEEIVERLKS----YVKEK------NM---PHLLFAGPPGTGKTTAALALARELYGEDWRE 69 (319)
T ss_pred Ccc--chhhCCCcHHHhcCcHHHHHHHHH----HHhCC------CC---CeEEEECCCCCCHHHHHHHHHHHHcCCcccc
Confidence 357 456789999999999887666544 33321 11 2589999999999999999999973 2
Q ss_pred ceEEEeeccccChHHHHHHH----Hhc----cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCC
Q 010133 264 DIYDLELTEVHNNSELRKLL----MKT----SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGS 335 (517)
Q Consensus 264 ~i~~l~l~~~~~~~~L~~lf----~~~----~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (517)
.++.++.+.......++..+ ... ..+.+|+|||+|.+.
T Consensus 70 ~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~---------------------------------- 115 (319)
T PRK00440 70 NFLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLT---------------------------------- 115 (319)
T ss_pred ceEEeccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCC----------------------------------
Confidence 34444444332222222222 111 135699999999861
Q ss_pred CCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCC
Q 010133 336 VGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESD 415 (517)
Q Consensus 336 ~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~ 415 (517)
......|+..++.... ...+|+++|.+..+.+++.+ |+. .+++++++.++...+++.++...+..
T Consensus 116 --------~~~~~~L~~~le~~~~----~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~ 180 (319)
T PRK00440 116 --------SDAQQALRRTMEMYSQ----NTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIE 180 (319)
T ss_pred --------HHHHHHHHHHHhcCCC----CCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCC
Confidence 1123456666665422 24677788888888888888 764 58999999999988888887666555
Q ss_pred CChHhHHHHHHh
Q 010133 416 LEDETLKELEDV 427 (517)
Q Consensus 416 ~~~~~~~~i~~l 427 (517)
++++.+..+...
T Consensus 181 i~~~al~~l~~~ 192 (319)
T PRK00440 181 ITDDALEAIYYV 192 (319)
T ss_pred CCHHHHHHHHHH
Confidence 555555555443
No 108
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.49 E-value=8.2e-13 Score=149.63 Aligned_cols=160 Identities=26% Similarity=0.250 Sum_probs=115.4
Q ss_pred ccc-ccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccChHHH-
Q 010133 202 FDT-LAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNNSEL- 279 (517)
Q Consensus 202 f~t-v~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~~~~L- 279 (517)
++. ..|.++.|++|++.+....... ......++|+||||||||++++++|+.++.+++.++++.+.+...+
T Consensus 320 l~~~~~g~~~vK~~i~~~l~~~~~~~-------~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~ 392 (784)
T PRK10787 320 LDTDHYGLERVKDRILEYLAVQSRVN-------KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIR 392 (784)
T ss_pred hhhhccCHHHHHHHHHHHHHHHHhcc-------cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhc
Confidence 443 7888899998887666444321 1123368999999999999999999999999999998877554333
Q ss_pred --------------HHHHHhcc-CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchh
Q 010133 280 --------------RKLLMKTS-SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNS 344 (517)
Q Consensus 280 --------------~~lf~~~~-~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (517)
.+.+..+. ...||+|||||.+.. . ...
T Consensus 393 g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~---~-----------------------------------~~g 434 (784)
T PRK10787 393 GHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSS---D-----------------------------------MRG 434 (784)
T ss_pred cchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhccc---c-----------------------------------cCC
Confidence 22333333 456899999998721 0 011
Q ss_pred hHHHHHHHhhcCCc----c-------cCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcC
Q 010133 345 ITLSGLLNFTDGLW----S-------CCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLG 410 (517)
Q Consensus 345 ~~ls~LLn~lDg~~----s-------~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~ 410 (517)
...+.||..+|--. . -.-.++++|+|||.. .|+|||+. ||+ .|.+..++.++...|++.|+.
T Consensus 435 ~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 435 DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred CHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhh
Confidence 24667888877310 0 011457899999988 49999999 995 689999999999999999883
No 109
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=5.8e-13 Score=145.75 Aligned_cols=170 Identities=20% Similarity=0.322 Sum_probs=120.4
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC------------
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY------------ 263 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~------------ 263 (517)
...|.+|++|+|.+..++.+...+. .. ..+..||||||||+|||++|+++|+.++.
T Consensus 9 kyRP~~f~diiGqe~iv~~L~~~i~----~~--------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C 76 (563)
T PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIE----SN--------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC 76 (563)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHH----cC--------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc
Confidence 3579999999999998777655443 21 12347999999999999999999999864
Q ss_pred ------------ceEEEeeccccChHHHHHHHHhc------cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCC
Q 010133 264 ------------DIYDLELTEVHNNSELRKLLMKT------SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYY 325 (517)
Q Consensus 264 ------------~i~~l~l~~~~~~~~L~~lf~~~------~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (517)
+++.++..+-..-..++.+.... ..+-|++|||+|.+
T Consensus 77 ~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~L------------------------- 131 (563)
T PRK06647 77 SSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHML------------------------- 131 (563)
T ss_pred hHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhc-------------------------
Confidence 23444433222334566665332 24579999999986
Q ss_pred CcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHH
Q 010133 326 EPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILL 405 (517)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~ 405 (517)
+...++.||..++.. ....++|++|+.+.+|.++|+. |+. .++|.+++.++....+
T Consensus 132 -----------------s~~a~naLLK~LEep----p~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L 187 (563)
T PRK06647 132 -----------------SNSAFNALLKTIEEP----PPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNML 187 (563)
T ss_pred -----------------CHHHHHHHHHhhccC----CCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHH
Confidence 233577888888864 3457888888889999999998 774 6899999999998888
Q ss_pred HHhcCCCCCCCChHhHHHHHH
Q 010133 406 KNYLGYEESDLEDETLKELED 426 (517)
Q Consensus 406 ~~~l~~~~~~~~~~~~~~i~~ 426 (517)
+..+...+..++...+..|++
T Consensus 188 ~~i~~~egi~id~eAl~lLa~ 208 (563)
T PRK06647 188 KKVCLEDQIKYEDEALKWIAY 208 (563)
T ss_pred HHHHHHcCCCCCHHHHHHHHH
Confidence 877654444444444444443
No 110
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.49 E-value=5.5e-13 Score=150.04 Aligned_cols=158 Identities=18% Similarity=0.345 Sum_probs=112.3
Q ss_pred cccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccChHHHHHHH
Q 010133 204 TLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNNSELRKLL 283 (517)
Q Consensus 204 tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~~~~L~~lf 283 (517)
.|+|.++.++.|.+.+.....+- ...+. +...+||+||||||||.+|+++|..++.+++.++|++......+.+++
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl---~~~~k-p~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~Li 534 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGL---GHEHK-PVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccc---cCCCC-CcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHc
Confidence 46788888777777665443210 01111 123699999999999999999999999999999998875433333332
Q ss_pred H---------------h---ccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhh
Q 010133 284 M---------------K---TSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSI 345 (517)
Q Consensus 284 ~---------------~---~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (517)
. + ..+.|||||||||.+ ...
T Consensus 535 G~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka------------------------------------------~~~ 572 (758)
T PRK11034 535 GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA------------------------------------------HPD 572 (758)
T ss_pred CCCCCcccccccchHHHHHHhCCCcEEEeccHhhh------------------------------------------hHH
Confidence 1 1 134699999999986 234
Q ss_pred HHHHHHHhhc-CCccc-CC-----CceEEEEEeCCC-------------------------CCCChhhhccCCceeeEec
Q 010133 346 TLSGLLNFTD-GLWSC-CG-----SEKIFVFTTNHI-------------------------EKLDPALLRSGRMDMHIFM 393 (517)
Q Consensus 346 ~ls~LLn~lD-g~~s~-~~-----~~~iiI~TTN~~-------------------------e~LD~ALlRpGR~d~~I~~ 393 (517)
.++.||..|| |.... .| .+.|+|+|||.- ..+.|+|+. |+|.+|.|
T Consensus 573 v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f 650 (758)
T PRK11034 573 VFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWF 650 (758)
T ss_pred HHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEc
Confidence 6778888887 32211 11 356899999922 235688888 99999999
Q ss_pred cCCCHHHHHHHHHHhc
Q 010133 394 SYCSYPALLILLKNYL 409 (517)
Q Consensus 394 ~~p~~e~~~~l~~~~l 409 (517)
.+.+.++...|+..++
T Consensus 651 ~~L~~~~l~~I~~~~l 666 (758)
T PRK11034 651 DHLSTDVIHQVVDKFI 666 (758)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999988776
No 111
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.49 E-value=4.2e-13 Score=142.33 Aligned_cols=193 Identities=17% Similarity=0.259 Sum_probs=122.4
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh-----CCceEEEee
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL-----GYDIYDLEL 270 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l-----~~~i~~l~l 270 (517)
+.+..+|++++..+.. ......+..+...+ |.. ..+++||||||||||+|++|+|+++ +..++.+++
T Consensus 103 l~~~~tfd~fi~g~~n-~~a~~~~~~~~~~~------~~~-~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~ 174 (405)
T TIGR00362 103 LNPKYTFDNFVVGKSN-RLAHAAALAVAENP------GKA-YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS 174 (405)
T ss_pred CCCCCcccccccCCcH-HHHHHHHHHHHhCc------Ccc-CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH
Confidence 4455689995533333 22344455554432 222 2468999999999999999999988 567888887
Q ss_pred ccccCh-------HHHHHHHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCch
Q 010133 271 TEVHNN-------SELRKLLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNN 343 (517)
Q Consensus 271 ~~~~~~-------~~L~~lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (517)
..+... ..+..+........+|+|||||.+.. +
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~---~------------------------------------- 214 (405)
T TIGR00362 175 EKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAG---K------------------------------------- 214 (405)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcC---C-------------------------------------
Confidence 664211 01112222334567999999998621 0
Q ss_pred hhHHHHHHHhhcCCcccCCCceEEEEEeCCCCC---CChhhhccCCce--eeEeccCCCHHHHHHHHHHhcCCCCCCCCh
Q 010133 344 SITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEK---LDPALLRSGRMD--MHIFMSYCSYPALLILLKNYLGYEESDLED 418 (517)
Q Consensus 344 ~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~---LD~ALlRpGR~d--~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~ 418 (517)
..+...|++.++.+... +..+||.++..|.. +++.|.. ||. ..+.+++|+.++|..+++..+...+..+++
T Consensus 215 ~~~~~~l~~~~n~~~~~--~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~ 290 (405)
T TIGR00362 215 ERTQEEFFHTFNALHEN--GKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPD 290 (405)
T ss_pred HHHHHHHHHHHHHHHHC--CCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 11223344444443322 22455544445543 5688888 886 579999999999999999988777767778
Q ss_pred HhHHHHHHhhCCCCCCHHHHHHHHH
Q 010133 419 ETLKELEDVVGKAEMTPADISEVLI 443 (517)
Q Consensus 419 ~~~~~i~~l~~~~~~spadi~~~l~ 443 (517)
+.++.|++.. .-+..++.+.+.
T Consensus 291 e~l~~ia~~~---~~~~r~l~~~l~ 312 (405)
T TIGR00362 291 EVLEFIAKNI---RSNVRELEGALN 312 (405)
T ss_pred HHHHHHHHhc---CCCHHHHHHHHH
Confidence 8888877653 345566666554
No 112
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=8.9e-13 Score=142.44 Aligned_cols=171 Identities=23% Similarity=0.287 Sum_probs=123.8
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhC-------------
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLG------------- 262 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~------------- 262 (517)
...|.+|++|+|.+..++.+...+ +.. ..+..||||||||||||++|+++|+.+.
T Consensus 7 KyRP~~fdeiiGqe~v~~~L~~~I----~~g--------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C 74 (535)
T PRK08451 7 KYRPKHFDELIGQESVSKTLSLAL----DNN--------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC 74 (535)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHH----HcC--------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 457999999999998876665543 221 2345799999999999999999999873
Q ss_pred -----------CceEEEeeccccChHHHHHHHHhc---c---CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCC
Q 010133 263 -----------YDIYDLELTEVHNNSELRKLLMKT---S---SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYY 325 (517)
Q Consensus 263 -----------~~i~~l~l~~~~~~~~L~~lf~~~---~---~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (517)
.+++.++.++-..-..++.+.... + ..-|++|||+|.+
T Consensus 75 ~~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~L------------------------- 129 (535)
T PRK08451 75 IQCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHML------------------------- 129 (535)
T ss_pred HHHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-------------------------
Confidence 234444443322345677776542 2 3469999999986
Q ss_pred CcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHH
Q 010133 326 EPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILL 405 (517)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~ 405 (517)
....++.||..|+... ....+|++|+.+.+|.++|+. |. .+++|.+++.++....+
T Consensus 130 -----------------t~~A~NALLK~LEEpp----~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L 185 (535)
T PRK08451 130 -----------------TKEAFNALLKTLEEPP----SYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHL 185 (535)
T ss_pred -----------------CHHHHHHHHHHHhhcC----CceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHH
Confidence 2345778888887752 336677788888999999998 75 68999999999988888
Q ss_pred HHhcCCCCCCCChHhHHHHHHh
Q 010133 406 KNYLGYEESDLEDETLKELEDV 427 (517)
Q Consensus 406 ~~~l~~~~~~~~~~~~~~i~~l 427 (517)
+..+..++..++...+..|+..
T Consensus 186 ~~Il~~EGi~i~~~Al~~Ia~~ 207 (535)
T PRK08451 186 KTILEKEGVSYEPEALEILARS 207 (535)
T ss_pred HHHHHHcCCCCCHHHHHHHHHH
Confidence 8877666655555555555543
No 113
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=1.1e-12 Score=145.20 Aligned_cols=172 Identities=20% Similarity=0.308 Sum_probs=120.7
Q ss_pred ccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC-----------
Q 010133 195 SFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY----------- 263 (517)
Q Consensus 195 ~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~----------- 263 (517)
....|.+|++++|.+..+..+...+.. . ....+||||||||||||++|+++|+.++.
T Consensus 8 ~kyRP~~f~~liGq~~i~~~L~~~l~~----~--------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~C 75 (620)
T PRK14948 8 HKYRPQRFDELVGQEAIATTLKNALIS----N--------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPC 75 (620)
T ss_pred HHhCCCcHhhccChHHHHHHHHHHHHc----C--------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCC
Confidence 345789999999998887766554432 1 12247999999999999999999999865
Q ss_pred ---------------ceEEEeeccccChHHHHHHHHhcc------CCcEEEEccchhhhccccccccCCCCCCCCCCCCC
Q 010133 264 ---------------DIYDLELTEVHNNSELRKLLMKTS------SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNG 322 (517)
Q Consensus 264 ---------------~i~~l~l~~~~~~~~L~~lf~~~~------~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~ 322 (517)
+++.++......-+.++.++..+. ..-||||||+|.+
T Consensus 76 g~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~L---------------------- 133 (620)
T PRK14948 76 GKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHML---------------------- 133 (620)
T ss_pred cccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECcccc----------------------
Confidence 334444332234456777765542 3469999999986
Q ss_pred CCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHH
Q 010133 323 NYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALL 402 (517)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~ 402 (517)
.....+.||..|+.. ....++|++|++++.|-++|+. |+ ..+.|..++.++..
T Consensus 134 --------------------t~~a~naLLK~LEeP----p~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~ 186 (620)
T PRK14948 134 --------------------STAAFNALLKTLEEP----PPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMV 186 (620)
T ss_pred --------------------CHHHHHHHHHHHhcC----CcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHH
Confidence 224567889998864 2447788888889999999987 77 67889999888877
Q ss_pred HHHHHhcCCCCCCCChHhHHHHHHh
Q 010133 403 ILLKNYLGYEESDLEDETLKELEDV 427 (517)
Q Consensus 403 ~l~~~~l~~~~~~~~~~~~~~i~~l 427 (517)
..+......++..++...+..+.+.
T Consensus 187 ~~L~~ia~kegi~is~~al~~La~~ 211 (620)
T PRK14948 187 QHLSEIAEKESIEIEPEALTLVAQR 211 (620)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 7766655544444444444444443
No 114
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.48 E-value=1.1e-12 Score=128.88 Aligned_cols=158 Identities=17% Similarity=0.194 Sum_probs=99.6
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeecc
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTE 272 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~ 272 (517)
..+..+|++++.. . ....+..+..+...+ ..+.++||||||||||+|++|+|+++ +..+..+++..
T Consensus 15 ~~~~~~fd~f~~~-~-n~~a~~~l~~~~~~~---------~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 15 LPDDETFASFYPG-D-NDSLLAALQNALRQE---------HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCCcCCccccccC-c-cHHHHHHHHHHHhCC---------CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 4455689998744 2 233455565554321 12479999999999999999999876 44566666654
Q ss_pred ccChHHHHHHHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHH
Q 010133 273 VHNNSELRKLLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLN 352 (517)
Q Consensus 273 ~~~~~~L~~lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn 352 (517)
... ....++....+-.+|+|||||.+. + .......+..++|
T Consensus 84 ~~~--~~~~~~~~~~~~dlliiDdi~~~~---~----------------------------------~~~~~~~lf~l~n 124 (235)
T PRK08084 84 RAW--FVPEVLEGMEQLSLVCIDNIECIA---G----------------------------------DELWEMAIFDLYN 124 (235)
T ss_pred Hhh--hhHHHHHHhhhCCEEEEeChhhhc---C----------------------------------CHHHHHHHHHHHH
Confidence 321 122333333344689999999862 0 1123344555555
Q ss_pred hhcCCcccCCCceEEEEEeCCCCC---CChhhhccCCce--eeEeccCCCHHHHHHHHHHhc
Q 010133 353 FTDGLWSCCGSEKIFVFTTNHIEK---LDPALLRSGRMD--MHIFMSYCSYPALLILLKNYL 409 (517)
Q Consensus 353 ~lDg~~s~~~~~~iiI~TTN~~e~---LD~ALlRpGR~d--~~I~~~~p~~e~~~~l~~~~l 409 (517)
.+- . .+...+|+.+++.|.. +.|+|+. |+. ..+.+.+|+.+++..+++...
T Consensus 125 ~~~---e-~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a 180 (235)
T PRK08084 125 RIL---E-SGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRA 180 (235)
T ss_pred HHH---H-cCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHH
Confidence 431 1 1222455555566655 5799999 875 788999999999988887644
No 115
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=1.2e-12 Score=144.15 Aligned_cols=170 Identities=15% Similarity=0.262 Sum_probs=118.8
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCc------------
Q 010133 197 KHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYD------------ 264 (517)
Q Consensus 197 ~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~------------ 264 (517)
..|.+|++|+|.+..++.+.+ .+... ..+.+||||||||||||++|+++|+.++..
T Consensus 10 yRP~~f~eivGQe~i~~~L~~----~i~~~--------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~ 77 (620)
T PRK14954 10 YRPSKFADITAQEHITHTIQN----SLRMD--------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEV 77 (620)
T ss_pred HCCCCHHHhcCcHHHHHHHHH----HHHcC--------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccccc
Confidence 479999999999888776544 23221 234479999999999999999999999762
Q ss_pred --------------------eEEEeeccccChHHHHHHHHhc------cCCcEEEEccchhhhccccccccCCCCCCCCC
Q 010133 265 --------------------IYDLELTEVHNNSELRKLLMKT------SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGN 318 (517)
Q Consensus 265 --------------------i~~l~l~~~~~~~~L~~lf~~~------~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~ 318 (517)
+..++.......+.++.+.... ..+-||+|||+|.+
T Consensus 78 ~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~L------------------ 139 (620)
T PRK14954 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHML------------------ 139 (620)
T ss_pred CCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhc------------------
Confidence 2223322222345677665544 24579999999986
Q ss_pred CCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCH
Q 010133 319 CGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSY 398 (517)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~ 398 (517)
.....+.||..|+.. ....++|++|+.+.+|-++|.. |. ..|+|.+++.
T Consensus 140 ------------------------t~~a~naLLK~LEeP----p~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~ 188 (620)
T PRK14954 140 ------------------------STAAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPL 188 (620)
T ss_pred ------------------------CHHHHHHHHHHHhCC----CCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCH
Confidence 122467788888775 2346777777888999999988 66 6899999999
Q ss_pred HHHHHHHHHhcCCCCCCCChHhHHHHHHh
Q 010133 399 PALLILLKNYLGYEESDLEDETLKELEDV 427 (517)
Q Consensus 399 e~~~~l~~~~l~~~~~~~~~~~~~~i~~l 427 (517)
++....++..+...+..++.+.++.|...
T Consensus 189 ~ei~~~L~~i~~~egi~I~~eal~~La~~ 217 (620)
T PRK14954 189 DEIQSQLQMICRAEGIQIDADALQLIARK 217 (620)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99888887766555544555555544443
No 116
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.47 E-value=5.1e-12 Score=131.88 Aligned_cols=157 Identities=18% Similarity=0.226 Sum_probs=106.9
Q ss_pred ccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhC---------CceEEEeeccc
Q 010133 203 DTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLG---------YDIYDLELTEV 273 (517)
Q Consensus 203 ~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~---------~~i~~l~l~~~ 273 (517)
+.+++.++..++|...+...+.+. -+.+++||||||||||++++++++.+. ..++.++|...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~---------~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGS---------RPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCC---------CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 468888888888877776665431 134799999999999999999998763 56778888665
Q ss_pred cChHH--------------------------HHHHHH---hccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCC
Q 010133 274 HNNSE--------------------------LRKLLM---KTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNY 324 (517)
Q Consensus 274 ~~~~~--------------------------L~~lf~---~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (517)
.+... +..++. ....+.||+|||+|.+.. .
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~---~------------------ 144 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVG---D------------------ 144 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhcc---C------------------
Confidence 33211 111222 223568999999999730 0
Q ss_pred CCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCC---CCChhhhccCCce-eeEeccCCCHHH
Q 010133 325 YEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIE---KLDPALLRSGRMD-MHIFMSYCSYPA 400 (517)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e---~LD~ALlRpGR~d-~~I~~~~p~~e~ 400 (517)
....+..|+...+-. ...+....+|++||.++ .+++.+.+ ||. ..|.|++++.++
T Consensus 145 ------------------~~~~L~~l~~~~~~~-~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e 203 (365)
T TIGR02928 145 ------------------DDDLLYQLSRARSNG-DLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEE 203 (365)
T ss_pred ------------------CcHHHHhHhcccccc-CCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHH
Confidence 112345555442111 11224577888998875 58888887 775 678999999999
Q ss_pred HHHHHHHhcC
Q 010133 401 LLILLKNYLG 410 (517)
Q Consensus 401 ~~~l~~~~l~ 410 (517)
+..+++..+.
T Consensus 204 ~~~il~~r~~ 213 (365)
T TIGR02928 204 LRDILENRAE 213 (365)
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 117
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.47 E-value=1.5e-12 Score=136.78 Aligned_cols=176 Identities=23% Similarity=0.269 Sum_probs=108.8
Q ss_pred ccc-ccCChHHHHHHHHHHHHHHhchhHH----HhhCCC-CCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccC
Q 010133 202 FDT-LAIDPEKKIEIMEDLKDFANGMSFY----QKTGRA-WKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHN 275 (517)
Q Consensus 202 f~t-v~~~~~~k~~i~~~l~~fl~~~~~y----~~~G~~-~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~ 275 (517)
++. |+|.++.++.+...+....++-... ..-|++ .+.++||+||||||||++|++||..++.++..++++.+..
T Consensus 75 L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~ 154 (413)
T TIGR00382 75 LDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTE 154 (413)
T ss_pred hcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccc
Confidence 444 5788888887765553333221100 000111 1357999999999999999999999999999998877531
Q ss_pred --------hHHHHHHHHhc------cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCC
Q 010133 276 --------NSELRKLLMKT------SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDG 341 (517)
Q Consensus 276 --------~~~L~~lf~~~------~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (517)
...+..++... ..++||||||||.+.. ++. +. +...+-
T Consensus 155 ~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~---~~~----~~---------------------s~~~dv 206 (413)
T TIGR00382 155 AGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISR---KSE----NP---------------------SITRDV 206 (413)
T ss_pred cccccccHHHHHHHHHHhCcccHHhcccceEEecccchhch---hhc----cc---------------------cccccc
Confidence 12244444322 3578999999998732 110 00 000011
Q ss_pred chhhHHHHHHHhhcCCccc---C------CCceEEEEEeCCCC-------------------------------------
Q 010133 342 NNSITLSGLLNFTDGLWSC---C------GSEKIFVFTTNHIE------------------------------------- 375 (517)
Q Consensus 342 ~~~~~ls~LLn~lDg~~s~---~------~~~~iiI~TTN~~e------------------------------------- 375 (517)
.....++.||..|||.... . ..+.|+|+|+|-.-
T Consensus 207 sg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~ 286 (413)
T TIGR00382 207 SGEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKAD 286 (413)
T ss_pred cchhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHH
Confidence 1234778899999886421 1 13357899988610
Q ss_pred -------------CCChhhhccCCceeeEeccCCCHHHHHHHHHH
Q 010133 376 -------------KLDPALLRSGRMDMHIFMSYCSYPALLILLKN 407 (517)
Q Consensus 376 -------------~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~ 407 (517)
.+.|+|+ ||+|..+.|.+.+.+++..|+..
T Consensus 287 ~~~~~~~~dl~~~g~~PEfl--gRld~Iv~f~pL~~~~L~~Il~~ 329 (413)
T TIGR00382 287 LLRQVEPEDLVKFGLIPEFI--GRLPVIATLEKLDEEALIAILTK 329 (413)
T ss_pred HHHHHHHHHHHHHhhHHHHh--CCCCeEeecCCCCHHHHHHHHHH
Confidence 0224444 48888888888888888777654
No 118
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.47 E-value=7.4e-13 Score=148.37 Aligned_cols=153 Identities=21% Similarity=0.241 Sum_probs=106.3
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccC
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHN 275 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~ 275 (517)
...|.+|++++|.+..... ...+...+... . ..++|||||||||||++|+++|+.++.+++.+++... .
T Consensus 21 k~RP~tldd~vGQe~ii~~-~~~L~~~i~~~------~---~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-~ 89 (725)
T PRK13341 21 RLRPRTLEEFVGQDHILGE-GRLLRRAIKAD------R---VGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-G 89 (725)
T ss_pred hcCCCcHHHhcCcHHHhhh-hHHHHHHHhcC------C---CceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-h
Confidence 3469999999998877543 12233333321 1 1369999999999999999999999999988887643 2
Q ss_pred hHHHHHHHHh-------ccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHH
Q 010133 276 NSELRKLLMK-------TSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLS 348 (517)
Q Consensus 276 ~~~L~~lf~~-------~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 348 (517)
...++..+.. ...+.||||||||.+- .....
T Consensus 90 i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln------------------------------------------~~qQd 127 (725)
T PRK13341 90 VKDLRAEVDRAKERLERHGKRTILFIDEVHRFN------------------------------------------KAQQD 127 (725)
T ss_pred hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCC------------------------------------------HHHHH
Confidence 2334433332 2356799999999861 12234
Q ss_pred HHHHhhcCCcccCCCceEEEEEe--CCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcC
Q 010133 349 GLLNFTDGLWSCCGSEKIFVFTT--NHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLG 410 (517)
Q Consensus 349 ~LLn~lDg~~s~~~~~~iiI~TT--N~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~ 410 (517)
.|+..++. +.+++|++| |....++++|++ |. ..+.|++++.+++..+++.++.
T Consensus 128 aLL~~lE~------g~IiLI~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 128 ALLPWVEN------GTITLIGATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred HHHHHhcC------ceEEEEEecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHH
Confidence 56666543 235566644 444578999998 64 4689999999999999998775
No 119
>PRK08727 hypothetical protein; Validated
Probab=99.47 E-value=1.3e-12 Score=128.21 Aligned_cols=174 Identities=18% Similarity=0.265 Sum_probs=110.9
Q ss_pred ccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeec
Q 010133 195 SFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELT 271 (517)
Q Consensus 195 ~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~ 271 (517)
......+|+++++.+... +..+..... | .+...++||||||||||+|+.|+|+++ +..+..+++.
T Consensus 11 ~~~~~~~f~~f~~~~~n~---~~~~~~~~~--------~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~ 78 (233)
T PRK08727 11 RYPSDQRFDSYIAAPDGL---LAQLQALAA--------G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ 78 (233)
T ss_pred CCCCcCChhhccCCcHHH---HHHHHHHHh--------c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH
Confidence 345566899988766532 222222221 1 123459999999999999999998775 6666777765
Q ss_pred cccChHHHHHHHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHH
Q 010133 272 EVHNNSELRKLLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLL 351 (517)
Q Consensus 272 ~~~~~~~L~~lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 351 (517)
... ..+...+....+..+|+|||||.+.. .......+..++
T Consensus 79 ~~~--~~~~~~~~~l~~~dlLiIDDi~~l~~-------------------------------------~~~~~~~lf~l~ 119 (233)
T PRK08727 79 AAA--GRLRDALEALEGRSLVALDGLESIAG-------------------------------------QREDEVALFDFH 119 (233)
T ss_pred Hhh--hhHHHHHHHHhcCCEEEEeCcccccC-------------------------------------ChHHHHHHHHHH
Confidence 542 34556666777778999999998620 111234444555
Q ss_pred HhhcCCcccCCCceEEEEEeCCCCCC---ChhhhccCCc--eeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHH
Q 010133 352 NFTDGLWSCCGSEKIFVFTTNHIEKL---DPALLRSGRM--DMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELED 426 (517)
Q Consensus 352 n~lDg~~s~~~~~~iiI~TTN~~e~L---D~ALlRpGR~--d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~ 426 (517)
|.+-. + +..+|+.+.+.|..+ +|+|.+ || ..++.+++|+.+++..+++......+..++++.+..|.+
T Consensus 120 n~~~~---~--~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~ 192 (233)
T PRK08727 120 NRARA---A--GITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLT 192 (233)
T ss_pred HHHHH---c--CCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 55422 1 123444444566655 799998 86 577899999999999999876543343444444444444
No 120
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=1.6e-12 Score=143.72 Aligned_cols=170 Identities=18% Similarity=0.312 Sum_probs=118.3
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC------------
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY------------ 263 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~------------ 263 (517)
...|.+|++|+|.+..++.|...+.. + ..+..||||||||||||++|+++|+.++.
T Consensus 9 kyRP~~~~eiiGq~~~~~~L~~~i~~---~---------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~ 76 (585)
T PRK14950 9 KWRSQTFAELVGQEHVVQTLRNAIAE---G---------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGT 76 (585)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHh---C---------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 45799999999999987776544331 1 12346899999999999999999998853
Q ss_pred -------------ceEEEeeccccChHHHHHHHHhc------cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCC
Q 010133 264 -------------DIYDLELTEVHNNSELRKLLMKT------SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNY 324 (517)
Q Consensus 264 -------------~i~~l~l~~~~~~~~L~~lf~~~------~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (517)
+++.++.+.....+.++.+.... ...-||||||+|.+
T Consensus 77 c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L------------------------ 132 (585)
T PRK14950 77 CEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHML------------------------ 132 (585)
T ss_pred CHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhC------------------------
Confidence 23344443333445566554332 24579999999986
Q ss_pred CCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHH
Q 010133 325 YEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLIL 404 (517)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l 404 (517)
....++.||..|+... ...++|++|+..+.+.+.|.. |. ..+.|..++..+...+
T Consensus 133 ------------------~~~a~naLLk~LEepp----~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~ 187 (585)
T PRK14950 133 ------------------STAAFNALLKTLEEPP----PHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAH 187 (585)
T ss_pred ------------------CHHHHHHHHHHHhcCC----CCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHH
Confidence 1235677888887752 346778888888888899887 66 4689999999988888
Q ss_pred HHHhcCCCCCCCChHhHHHHHH
Q 010133 405 LKNYLGYEESDLEDETLKELED 426 (517)
Q Consensus 405 ~~~~l~~~~~~~~~~~~~~i~~ 426 (517)
++.++...+..++.+.+..|..
T Consensus 188 L~~~a~~egl~i~~eal~~La~ 209 (585)
T PRK14950 188 LRKIAAAEGINLEPGALEAIAR 209 (585)
T ss_pred HHHHHHHcCCCCCHHHHHHHHH
Confidence 8777655554444544444444
No 121
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=2.3e-12 Score=142.45 Aligned_cols=170 Identities=19% Similarity=0.326 Sum_probs=125.0
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhC-------------
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLG------------- 262 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~------------- 262 (517)
...|.+|++|+|.+..++.+...+. . | ..+..||||||+|+|||++|+++|..++
T Consensus 10 kyRP~~f~~viGq~~~~~~L~~~i~----~-------~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~ 77 (614)
T PRK14971 10 KYRPSTFESVVGQEALTTTLKNAIA----T-------N-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNE 77 (614)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHH----c-------C-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCc
Confidence 4679999999999988777655443 2 1 2345799999999999999999999875
Q ss_pred ------------CceEEEeeccccChHHHHHHHHhcc------CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCC
Q 010133 263 ------------YDIYDLELTEVHNNSELRKLLMKTS------SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNY 324 (517)
Q Consensus 263 ------------~~i~~l~l~~~~~~~~L~~lf~~~~------~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (517)
.+++.++..+..+-..++.++..+. ..-|++|||+|.+
T Consensus 78 C~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~L------------------------ 133 (614)
T PRK14971 78 CESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHML------------------------ 133 (614)
T ss_pred chHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccC------------------------
Confidence 4556666654444566777775442 3469999999986
Q ss_pred CCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHH
Q 010133 325 YEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLIL 404 (517)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l 404 (517)
.....+.||..|+.. ....++|++|+.+.+|-++|+. |. ..+.|.+++.++....
T Consensus 134 ------------------s~~a~naLLK~LEep----p~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~ 188 (614)
T PRK14971 134 ------------------SQAAFNAFLKTLEEP----PSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNH 188 (614)
T ss_pred ------------------CHHHHHHHHHHHhCC----CCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHH
Confidence 123567888888875 2346788888888999999998 76 5699999999998888
Q ss_pred HHHhcCCCCCCCChHhHHHHHH
Q 010133 405 LKNYLGYEESDLEDETLKELED 426 (517)
Q Consensus 405 ~~~~l~~~~~~~~~~~~~~i~~ 426 (517)
++..+..++...+...+..|+.
T Consensus 189 L~~ia~~egi~i~~~al~~La~ 210 (614)
T PRK14971 189 LQYVASKEGITAEPEALNVIAQ 210 (614)
T ss_pred HHHHHHHcCCCCCHHHHHHHHH
Confidence 8877666555554544444444
No 122
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.43 E-value=1.3e-12 Score=139.55 Aligned_cols=192 Identities=16% Similarity=0.276 Sum_probs=119.4
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh-----CCceEEEee
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL-----GYDIYDLEL 270 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l-----~~~i~~l~l 270 (517)
+.+..+|++++..+... .....+..+...+.+ ..+++||||||||||+|++|+|+++ +..++.+++
T Consensus 98 l~~~~tFdnFv~g~~n~-~a~~~~~~~~~~~~~--------~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 98 LNPDYTFENFVVGPGNS-FAYHAALEVAKNPGR--------YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CCCCCcccccccCCchH-HHHHHHHHHHhCcCC--------CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 45566899988544433 233445555543321 2469999999999999999999986 457787877
Q ss_pred ccccCh-------HHHHHHHHhcc-CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCc
Q 010133 271 TEVHNN-------SELRKLLMKTS-SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGN 342 (517)
Q Consensus 271 ~~~~~~-------~~L~~lf~~~~-~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (517)
..+... ..+..+..... .+.+|+|||+|.+.+ . .
T Consensus 169 ~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~---~----------------------------------~- 210 (440)
T PRK14088 169 EKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIG---K----------------------------------T- 210 (440)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcC---c----------------------------------H-
Confidence 654211 11122222222 578999999998631 0 0
Q ss_pred hhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCC---CChhhhccCCc--eeeEeccCCCHHHHHHHHHHhcCCCCCCCC
Q 010133 343 NSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEK---LDPALLRSGRM--DMHIFMSYCSYPALLILLKNYLGYEESDLE 417 (517)
Q Consensus 343 ~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~---LD~ALlRpGR~--d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~ 417 (517)
.+...|+..++.+... +..+||.+.+.|.. +++.|.. || +..+.+.+|+.+.|..|++..+...+..++
T Consensus 211 --~~q~elf~~~n~l~~~--~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~ 284 (440)
T PRK14088 211 --GVQTELFHTFNELHDS--GKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELP 284 (440)
T ss_pred --HHHHHHHHHHHHHHHc--CCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCC
Confidence 1122333334333322 22344444455554 4677887 66 467889999999999999998876666677
Q ss_pred hHhHHHHHHhhCCCCCCHHHHHHHHH
Q 010133 418 DETLKELEDVVGKAEMTPADISEVLI 443 (517)
Q Consensus 418 ~~~~~~i~~l~~~~~~spadi~~~l~ 443 (517)
++.++.|++.. .-+.+++.+.+.
T Consensus 285 ~ev~~~Ia~~~---~~~~R~L~g~l~ 307 (440)
T PRK14088 285 EEVLNFVAENV---DDNLRRLRGAII 307 (440)
T ss_pred HHHHHHHHhcc---ccCHHHHHHHHH
Confidence 77777777653 234466665554
No 123
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.43 E-value=2.2e-12 Score=140.40 Aligned_cols=193 Identities=16% Similarity=0.231 Sum_probs=122.6
Q ss_pred ccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh-----CCceEEEe
Q 010133 195 SFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL-----GYDIYDLE 269 (517)
Q Consensus 195 ~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l-----~~~i~~l~ 269 (517)
.+....+|++++..+.-. .....+...... .+. +...++|||++|||||+|+.|||+++ ++.++.++
T Consensus 280 ~L~~~~TFDnFvvG~sN~-~A~aaa~avae~------~~~-~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit 351 (617)
T PRK14086 280 RLNPKYTFDTFVIGASNR-FAHAAAVAVAEA------PAK-AYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS 351 (617)
T ss_pred CCCCCCCHhhhcCCCccH-HHHHHHHHHHhC------ccc-cCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 344556899988655432 222333333332 122 22369999999999999999999987 56788888
Q ss_pred eccccCh-------HHHHHHHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCc
Q 010133 270 LTEVHNN-------SELRKLLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGN 342 (517)
Q Consensus 270 l~~~~~~-------~~L~~lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (517)
+..+... ..+..+........+|+||||+.+.. ...
T Consensus 352 aeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~g-------------------------------------ke~ 394 (617)
T PRK14086 352 SEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLED-------------------------------------KES 394 (617)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccC-------------------------------------CHH
Confidence 8665311 11112222334678999999998621 111
Q ss_pred hhhHHHHHHHhhcCCcccCCCceEEEEEeCCC----CCCChhhhccCCc--eeeEeccCCCHHHHHHHHHHhcCCCCCCC
Q 010133 343 NSITLSGLLNFTDGLWSCCGSEKIFVFTTNHI----EKLDPALLRSGRM--DMHIFMSYCSYPALLILLKNYLGYEESDL 416 (517)
Q Consensus 343 ~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~----e~LD~ALlRpGR~--d~~I~~~~p~~e~~~~l~~~~l~~~~~~~ 416 (517)
.+..+..++|.+ ..+ +.. ||+|+|.+ ..+++.|.. || ...+.+..|+.+.|..|++..+...+..+
T Consensus 395 tqeeLF~l~N~l---~e~--gk~-IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l 466 (617)
T PRK14086 395 TQEEFFHTFNTL---HNA--NKQ-IVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNA 466 (617)
T ss_pred HHHHHHHHHHHH---Hhc--CCC-EEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence 223333444443 222 223 44566643 357899999 77 56679999999999999999887777777
Q ss_pred ChHhHHHHHHhhCCCCCCHHHHHHHHH
Q 010133 417 EDETLKELEDVVGKAEMTPADISEVLI 443 (517)
Q Consensus 417 ~~~~~~~i~~l~~~~~~spadi~~~l~ 443 (517)
+++.++.|+..+. =+.++|.++|.
T Consensus 467 ~~eVi~yLa~r~~---rnvR~LegaL~ 490 (617)
T PRK14086 467 PPEVLEFIASRIS---RNIRELEGALI 490 (617)
T ss_pred CHHHHHHHHHhcc---CCHHHHHHHHH
Confidence 7777777776532 24566666555
No 124
>PRK05642 DNA replication initiation factor; Validated
Probab=99.42 E-value=4e-12 Score=124.89 Aligned_cols=196 Identities=17% Similarity=0.235 Sum_probs=116.0
Q ss_pred ccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCC-CcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEee
Q 010133 195 SFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAW-KRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLEL 270 (517)
Q Consensus 195 ~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~-~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l 270 (517)
...+..+|++.+... ....++.+..+..... .| .++++||||+|||||+|++|+|+++ +..++.++.
T Consensus 11 ~~~~~~tfdnF~~~~--~~~a~~~~~~~~~~~~-------~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~ 81 (234)
T PRK05642 11 RLRDDATFANYYPGA--NAAALGYVERLCEADA-------GWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL 81 (234)
T ss_pred CCCCcccccccCcCC--hHHHHHHHHHHhhccc-------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH
Confidence 344556899987433 2334444544433211 12 2578999999999999999999875 677888887
Q ss_pred ccccChHHHHHHHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHH
Q 010133 271 TEVHNNSELRKLLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGL 350 (517)
Q Consensus 271 ~~~~~~~~L~~lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 350 (517)
.++... ...++.....-.+|+||||+.+. + .......+-.+
T Consensus 82 ~~~~~~--~~~~~~~~~~~d~LiiDDi~~~~---~----------------------------------~~~~~~~Lf~l 122 (234)
T PRK05642 82 AELLDR--GPELLDNLEQYELVCLDDLDVIA---G----------------------------------KADWEEALFHL 122 (234)
T ss_pred HHHHhh--hHHHHHhhhhCCEEEEechhhhc---C----------------------------------ChHHHHHHHHH
Confidence 765322 12333334444689999999752 0 11123344455
Q ss_pred HHhhcCCcccCCCceEEEEEeCCCCC---CChhhhccCCc--eeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHH
Q 010133 351 LNFTDGLWSCCGSEKIFVFTTNHIEK---LDPALLRSGRM--DMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELE 425 (517)
Q Consensus 351 Ln~lDg~~s~~~~~~iiI~TTN~~e~---LD~ALlRpGR~--d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~ 425 (517)
+|.+ .. .+.++||.++..|.. +.|+|+. |+ ...+.+..|+.+++..+++......+..++
T Consensus 123 ~n~~---~~--~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~-------- 187 (234)
T PRK05642 123 FNRL---RD--SGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLT-------- 187 (234)
T ss_pred HHHH---Hh--cCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCC--------
Confidence 5543 22 123555555544543 3689998 77 477788999999999888754322222222
Q ss_pred HhhCCCCCCHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Q 010133 426 DVVGKAEMTPADISEVLIKNKRDKCKAVRELLETLKVK 463 (517)
Q Consensus 426 ~l~~~~~~spadi~~~l~~~~~~~~~al~~l~~~l~~~ 463 (517)
.++.+++..+...-...+..+++.|...
T Consensus 188 ----------~ev~~~L~~~~~~d~r~l~~~l~~l~~~ 215 (234)
T PRK05642 188 ----------DEVGHFILTRGTRSMSALFDLLERLDQA 215 (234)
T ss_pred ----------HHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3444555544444444555555666543
No 125
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.42 E-value=2.2e-11 Score=128.45 Aligned_cols=175 Identities=21% Similarity=0.273 Sum_probs=114.3
Q ss_pred cccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh-----CCceEEEeeccccCh
Q 010133 202 FDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL-----GYDIYDLELTEVHNN 276 (517)
Q Consensus 202 f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l-----~~~i~~l~l~~~~~~ 276 (517)
.+.+++.++..++|...+...+.+ ..+.++++|||||||||++++.+++.+ +..++.++|....+.
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~---------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~ 99 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRG---------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTR 99 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCH
Confidence 356777777777766666554432 113468999999999999999999887 577888888654321
Q ss_pred H-----------------------HH-HHH---HHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCccc
Q 010133 277 S-----------------------EL-RKL---LMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEM 329 (517)
Q Consensus 277 ~-----------------------~L-~~l---f~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (517)
. .+ ..+ +.....+.||+|||+|.+.. +
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~----~---------------------- 153 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFE----K---------------------- 153 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhc----c----------------------
Confidence 1 11 111 11223458999999998730 0
Q ss_pred ccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCC---CCCChhhhccCCce-eeEeccCCCHHHHHHHH
Q 010133 330 RCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHI---EKLDPALLRSGRMD-MHIFMSYCSYPALLILL 405 (517)
Q Consensus 330 ~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~---e~LD~ALlRpGR~d-~~I~~~~p~~e~~~~l~ 405 (517)
.....+..|++.++... +....+|+++|.. +.+++.+.. |+. ..|.|++++.++...++
T Consensus 154 ------------~~~~~l~~l~~~~~~~~---~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il 216 (394)
T PRK00411 154 ------------EGNDVLYSLLRAHEEYP---GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDIL 216 (394)
T ss_pred ------------CCchHHHHHHHhhhccC---CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHH
Confidence 01235667777665542 2246788888865 457888776 553 57899999999999999
Q ss_pred HHhcCCC--CCCCChHhHHHHHHhh
Q 010133 406 KNYLGYE--ESDLEDETLKELEDVV 428 (517)
Q Consensus 406 ~~~l~~~--~~~~~~~~~~~i~~l~ 428 (517)
+..+... ...++++.++.+++..
T Consensus 217 ~~r~~~~~~~~~~~~~~l~~i~~~~ 241 (394)
T PRK00411 217 KDRVEEGFYPGVVDDEVLDLIADLT 241 (394)
T ss_pred HHHHHhhcccCCCCHhHHHHHHHHH
Confidence 8776321 2234556666666653
No 126
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.41 E-value=2.3e-12 Score=130.83 Aligned_cols=129 Identities=16% Similarity=0.170 Sum_probs=92.4
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccChHHHHHH------------------HHh-ccCCcEEEEccc
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNNSELRKL------------------LMK-TSSKSIIVIEDI 297 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~~~~L~~l------------------f~~-~~~~sII~iDdI 297 (517)
++++||.||||||||++++++|..++.+++.++|+...+..++-.- |.. ...+++|++|||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEi 143 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDEY 143 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEechh
Confidence 3589999999999999999999999999999999876443322110 111 135688999999
Q ss_pred hhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcC--Ccc--------cCCCceEE
Q 010133 298 DCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDG--LWS--------CCGSEKIF 367 (517)
Q Consensus 298 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg--~~s--------~~~~~~ii 367 (517)
|.+ ...+++.|...+|. ... .......+
T Consensus 144 n~a------------------------------------------~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~Frv 181 (327)
T TIGR01650 144 DAG------------------------------------------RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRL 181 (327)
T ss_pred hcc------------------------------------------CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEE
Confidence 985 12244454444441 110 01123568
Q ss_pred EEEeCCCC------------CCChhhhccCCceeeEeccCCCHHHHHHHHHHhc
Q 010133 368 VFTTNHIE------------KLDPALLRSGRMDMHIFMSYCSYPALLILLKNYL 409 (517)
Q Consensus 368 I~TTN~~e------------~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l 409 (517)
|+|+|..+ .|++|++. ||-..+.++||+.+.-..|+....
T Consensus 182 iAT~Np~g~Gd~~G~y~Gt~~l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 182 FATANTIGLGDTTGLYHGTQQINQAQMD--RWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred EEeeCCCCcCCCCcceeeeecCCHHHHh--heeeEeeCCCCCHHHHHHHHHhhc
Confidence 89999865 36899999 998889999999999888887654
No 127
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=7.3e-12 Score=136.22 Aligned_cols=182 Identities=28% Similarity=0.347 Sum_probs=138.0
Q ss_pred hchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecccc------ChHHHHHHHHhcc--CCcEEEEc
Q 010133 224 NGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVH------NNSELRKLLMKTS--SKSIIVIE 295 (517)
Q Consensus 224 ~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~------~~~~L~~lf~~~~--~~sII~iD 295 (517)
..+..+...|+..++++++|||||||||++++++|+. +.....++..... +...++.+|..+. .|+|+++|
T Consensus 5 ~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d 83 (494)
T COG0464 5 KEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFID 83 (494)
T ss_pred cCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeec
Confidence 3456788899999999999999999999999999999 5544555544432 3455777776654 67999999
Q ss_pred cchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCC
Q 010133 296 DIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIE 375 (517)
Q Consensus 296 dID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e 375 (517)
++|.+...... ..........+.|+..+|++. .+. .+++..||.+.
T Consensus 84 ~~~~~~~~~~~-------------------------------~~~~~~~~v~~~l~~~~d~~~--~~~-v~~~~~~~~~~ 129 (494)
T COG0464 84 EIDALAPKRSS-------------------------------DQGEVERRVVAQLLALMDGLK--RGQ-VIVIGATNRPD 129 (494)
T ss_pred hhhhcccCccc-------------------------------cccchhhHHHHHHHHhccccc--CCc-eEEEeecCCcc
Confidence 99998532111 113345678899999999997 455 88888999999
Q ss_pred CCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhhCCCCCCHHHHHHHHH
Q 010133 376 KLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDVVGKAEMTPADISEVLI 443 (517)
Q Consensus 376 ~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~~~~~~spadi~~~l~ 443 (517)
.+|+++++||||+..+.+..|+.+.+..++........... ......++.. +.+++.+++..++.
T Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~-~~~~~~~a~~--~~~~~~~~~~~l~~ 194 (494)
T COG0464 130 GLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMFLGP-PGTGKTLAAR--TVGKSGADLGALAK 194 (494)
T ss_pred ccChhHhCccccceeeecCCCCHHHHHHHHHHHHhcCCCcc-cccHHHHHHh--cCCccHHHHHHHHH
Confidence 99999999999999999999999988777776543222111 2345555555 68999999988874
No 128
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.40 E-value=5.6e-12 Score=142.98 Aligned_cols=154 Identities=18% Similarity=0.285 Sum_probs=108.2
Q ss_pred cccCChHHHHHHHHHHHHHHhchhHHHhhCCCC---Cc-ceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccChHH-
Q 010133 204 TLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAW---KR-GYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNNSE- 278 (517)
Q Consensus 204 tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~---~r-g~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~~~~- 278 (517)
.|+|.+..++.|.+.+... +.|+.. |. .+||+||||||||+||++||..++.+++.+++++......
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~ 526 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTV 526 (731)
T ss_pred ceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccH
Confidence 4667777766665544322 223321 23 4899999999999999999999999999999987643222
Q ss_pred ------------------HHHHHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCC
Q 010133 279 ------------------LRKLLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGED 340 (517)
Q Consensus 279 ------------------L~~lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (517)
+...+. ..+.+||||||||.+
T Consensus 527 ~~lig~~~gyvg~~~~~~l~~~~~-~~p~~VvllDEieka---------------------------------------- 565 (731)
T TIGR02639 527 SRLIGAPPGYVGFEQGGLLTEAVR-KHPHCVLLLDEIEKA---------------------------------------- 565 (731)
T ss_pred HHHhcCCCCCcccchhhHHHHHHH-hCCCeEEEEechhhc----------------------------------------
Confidence 222222 235699999999976
Q ss_pred CchhhHHHHHHHhhcCCccc--C-----CCceEEEEEeCCC-------------------------CCCChhhhccCCce
Q 010133 341 GNNSITLSGLLNFTDGLWSC--C-----GSEKIFVFTTNHI-------------------------EKLDPALLRSGRMD 388 (517)
Q Consensus 341 ~~~~~~ls~LLn~lDg~~s~--~-----~~~~iiI~TTN~~-------------------------e~LD~ALlRpGR~d 388 (517)
.....+.||..+|.-.-. . -.+.+||+|||.. ..+.|.|+. |||
T Consensus 566 --~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid 641 (731)
T TIGR02639 566 --HPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLD 641 (731)
T ss_pred --CHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCC
Confidence 234567788888743111 1 1346899999863 124677776 999
Q ss_pred eeEeccCCCHHHHHHHHHHhcC
Q 010133 389 MHIFMSYCSYPALLILLKNYLG 410 (517)
Q Consensus 389 ~~I~~~~p~~e~~~~l~~~~l~ 410 (517)
.+|.|.+.+.++...|++..+.
T Consensus 642 ~Vi~F~pLs~e~l~~Iv~~~L~ 663 (731)
T TIGR02639 642 AIIHFNPLSEEVLEKIVQKFVD 663 (731)
T ss_pred eEEEcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999988763
No 129
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.40 E-value=4.1e-12 Score=123.53 Aligned_cols=177 Identities=20% Similarity=0.286 Sum_probs=105.1
Q ss_pred CCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh-----CCceEEEeeccc
Q 010133 199 PSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL-----GYDIYDLELTEV 273 (517)
Q Consensus 199 p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l-----~~~i~~l~l~~~ 273 (517)
.-||++++..+.-+ .....+..+...+ |.. -.+++||||+|+|||+|.+|+++++ +..++.++...+
T Consensus 4 ~~tFdnfv~g~~N~-~a~~~~~~ia~~~------~~~-~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f 75 (219)
T PF00308_consen 4 KYTFDNFVVGESNE-LAYAAAKAIAENP------GER-YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEF 75 (219)
T ss_dssp T-SCCCS--TTTTH-HHHHHHHHHHHST------TTS-SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHH
T ss_pred CCccccCCcCCcHH-HHHHHHHHHHhcC------CCC-CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHH
Confidence 44899987544432 2334455555443 111 1358999999999999999999886 567888877665
Q ss_pred cC-------hHHHHHHHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhH
Q 010133 274 HN-------NSELRKLLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSIT 346 (517)
Q Consensus 274 ~~-------~~~L~~lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (517)
.. ...+..+......-.+|+|||||.+.+ ...+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~----------------------------------------~~~~ 115 (219)
T PF00308_consen 76 IREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAG----------------------------------------KQRT 115 (219)
T ss_dssp HHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTT----------------------------------------HHHH
T ss_pred HHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcC----------------------------------------chHH
Confidence 21 122334445566789999999998721 2234
Q ss_pred HHHHHHhhcCCcccCCCceEEEEEeCCCCC---CChhhhccCCcee--eEeccCCCHHHHHHHHHHhcCCCCCCCChHhH
Q 010133 347 LSGLLNFTDGLWSCCGSEKIFVFTTNHIEK---LDPALLRSGRMDM--HIFMSYCSYPALLILLKNYLGYEESDLEDETL 421 (517)
Q Consensus 347 ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~---LD~ALlRpGR~d~--~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~ 421 (517)
...|++.++.+..+ +..+||.+...|.. ++|.|.. ||.. .+.+..|+.+.+..+++.+....+..++++.+
T Consensus 116 q~~lf~l~n~~~~~--~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~ 191 (219)
T PF00308_consen 116 QEELFHLFNRLIES--GKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVI 191 (219)
T ss_dssp HHHHHHHHHHHHHT--TSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHH
T ss_pred HHHHHHHHHHHHhh--CCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHH
Confidence 44555555544332 34565555556654 4688888 7664 78899999999999999887655544545555
Q ss_pred HHHHHh
Q 010133 422 KELEDV 427 (517)
Q Consensus 422 ~~i~~l 427 (517)
..|+..
T Consensus 192 ~~l~~~ 197 (219)
T PF00308_consen 192 EYLARR 197 (219)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 554443
No 130
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.40 E-value=6.1e-12 Score=134.37 Aligned_cols=183 Identities=19% Similarity=0.264 Sum_probs=113.4
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeecc
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTE 272 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~ 272 (517)
+.+..||++++..+... .....+..+..... ...|.+ .++++||||||+|||+|++|+|+++ +..++.++...
T Consensus 104 l~~~~tFdnFv~g~~N~-~a~~~a~~~a~~~~--~~~~~~-~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~ 179 (445)
T PRK12422 104 LDPLMTFANFLVTPEND-LPHRILQEFTKVSE--QGKGFP-FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSEL 179 (445)
T ss_pred CCccccccceeeCCcHH-HHHHHHHHHHhccc--cccCCC-CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHH
Confidence 34556899987544332 22233444433210 011112 2479999999999999999999987 67888887655
Q ss_pred ccCh-------HHHHHHHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhh
Q 010133 273 VHNN-------SELRKLLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSI 345 (517)
Q Consensus 273 ~~~~-------~~L~~lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (517)
+... .....+-.......+|+||||+.+. + ....+.
T Consensus 180 f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~---~----------------------------------k~~~qe 222 (445)
T PRK12422 180 FTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFS---G----------------------------------KGATQE 222 (445)
T ss_pred HHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhc---C----------------------------------ChhhHH
Confidence 4210 1111111123567899999999862 0 011223
Q ss_pred HHHHHHHhhcCCcccCCCceEEEEEeCC-C---CCCChhhhccCCce--eeEeccCCCHHHHHHHHHHhcCCCCCCCChH
Q 010133 346 TLSGLLNFTDGLWSCCGSEKIFVFTTNH-I---EKLDPALLRSGRMD--MHIFMSYCSYPALLILLKNYLGYEESDLEDE 419 (517)
Q Consensus 346 ~ls~LLn~lDg~~s~~~~~~iiI~TTN~-~---e~LD~ALlRpGR~d--~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~ 419 (517)
.+..++|.+ ... +..+|+|+|. | ..++++|.+ ||. ..+.+.+|+.+.+..+++..+...+..++++
T Consensus 223 elf~l~N~l---~~~---~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~e 294 (445)
T PRK12422 223 EFFHTFNSL---HTE---GKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEET 294 (445)
T ss_pred HHHHHHHHH---HHC---CCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 344444433 211 1345555554 4 356899999 885 8889999999999999998877666666677
Q ss_pred hHHHHHHh
Q 010133 420 TLKELEDV 427 (517)
Q Consensus 420 ~~~~i~~l 427 (517)
.++.|+..
T Consensus 295 vl~~la~~ 302 (445)
T PRK12422 295 ALDFLIEA 302 (445)
T ss_pred HHHHHHHh
Confidence 77766654
No 131
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.39 E-value=4.3e-12 Score=127.38 Aligned_cols=149 Identities=21% Similarity=0.306 Sum_probs=98.8
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCc-eEEEeecccc-C
Q 010133 198 HPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYD-IYDLELTEVH-N 275 (517)
Q Consensus 198 ~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~-i~~l~l~~~~-~ 275 (517)
.|.++++.+|.+....+ -..|..++... .+| .++|+||||||||+||+.||+...-+ +..|.++... .
T Consensus 133 RPktL~dyvGQ~hlv~q-~gllrs~ieq~------~ip---SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~ 202 (554)
T KOG2028|consen 133 RPKTLDDYVGQSHLVGQ-DGLLRSLIEQN------RIP---SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAK 202 (554)
T ss_pred CcchHHHhcchhhhcCc-chHHHHHHHcC------CCC---ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccc
Confidence 57788888877665433 22233333321 122 79999999999999999999988665 3344554443 4
Q ss_pred hHHHHHHHHhc-------cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHH
Q 010133 276 NSELRKLLMKT-------SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLS 348 (517)
Q Consensus 276 ~~~L~~lf~~~-------~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 348 (517)
..+++.+|.++ ..+.|||||||+++ .+....
T Consensus 203 t~dvR~ife~aq~~~~l~krkTilFiDEiHRF------------------------------------------NksQQD 240 (554)
T KOG2028|consen 203 TNDVRDIFEQAQNEKSLTKRKTILFIDEIHRF------------------------------------------NKSQQD 240 (554)
T ss_pred hHHHHHHHHHHHHHHhhhcceeEEEeHHhhhh------------------------------------------hhhhhh
Confidence 56789998765 46899999999986 112222
Q ss_pred HHHHhhcCCcccCCCceEEEEEe--CCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHH
Q 010133 349 GLLNFTDGLWSCCGSEKIFVFTT--NHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKN 407 (517)
Q Consensus 349 ~LLn~lDg~~s~~~~~~iiI~TT--N~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~ 407 (517)
.||-.++. +.+++|++| |..-.|..||+. |+ .++.+.....+....++.+
T Consensus 241 ~fLP~VE~------G~I~lIGATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 241 TFLPHVEN------GDITLIGATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMR 292 (554)
T ss_pred cccceecc------CceEEEecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHH
Confidence 34444322 347777744 555688999998 77 4566666777777777766
No 132
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.39 E-value=1.8e-11 Score=135.40 Aligned_cols=192 Identities=18% Similarity=0.258 Sum_probs=120.9
Q ss_pred ccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh----------CCceEEEeecc
Q 010133 203 DTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL----------GYDIYDLELTE 272 (517)
Q Consensus 203 ~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l----------~~~i~~l~l~~ 272 (517)
+.|.+.++..++|...|...+... .....+++|||||||||++++.+..++ .+.++.|||..
T Consensus 755 D~LPhREeEIeeLasfL~paIkgs--------gpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQS--------GSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcC--------CCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 456677777666666555555431 112235699999999999999998776 25678899965
Q ss_pred ccCh-----------------------HHHHHHHHhcc----CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCC
Q 010133 273 VHNN-----------------------SELRKLLMKTS----SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYY 325 (517)
Q Consensus 273 ~~~~-----------------------~~L~~lf~~~~----~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (517)
+.+. ..+..+|.... ..+||+|||||.+..
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~k----------------------- 883 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLIT----------------------- 883 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCc-----------------------
Confidence 4322 22334444331 346999999999841
Q ss_pred CcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCC---CCCCChhhhccCCcee-eEeccCCCHHHH
Q 010133 326 EPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNH---IEKLDPALLRSGRMDM-HIFMSYCSYPAL 401 (517)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~---~e~LD~ALlRpGR~d~-~I~~~~p~~e~~ 401 (517)
..+..|-.|++.... .+...+||+.+|. ++.|+|.+.. |+.. .|.|++++.+++
T Consensus 884 ----------------K~QDVLYnLFR~~~~----s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL 941 (1164)
T PTZ00112 884 ----------------KTQKVLFTLFDWPTK----INSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEI 941 (1164)
T ss_pred ----------------cHHHHHHHHHHHhhc----cCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHH
Confidence 122345555554321 2345778888885 5677888887 6654 478899999999
Q ss_pred HHHHHHhcCCCCCCCChHhHHHHHHhhCCCCCCHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 010133 402 LILLKNYLGYEESDLEDETLKELEDVVGKAEMTPADISEVLIKNKRDKCKAVRELLETLK 461 (517)
Q Consensus 402 ~~l~~~~l~~~~~~~~~~~~~~i~~l~~~~~~spadi~~~l~~~~~~~~~al~~l~~~l~ 461 (517)
..|++..+......++++.++.+++... ....|+..||+-+..+.+
T Consensus 942 ~dILk~RAe~A~gVLdDdAIELIArkVA--------------q~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 942 EKIIKERLENCKEIIDHTAIQLCARKVA--------------NVSGDIRKALQICRKAFE 987 (1164)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhhh--------------hcCCHHHHHHHHHHHHHh
Confidence 9999887654333344555655555421 122566666665555544
No 133
>PRK06620 hypothetical protein; Validated
Probab=99.38 E-value=1.3e-11 Score=119.59 Aligned_cols=162 Identities=17% Similarity=0.269 Sum_probs=100.0
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCC-CCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccC
Q 010133 197 KHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGR-AWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHN 275 (517)
Q Consensus 197 ~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~-~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~ 275 (517)
.+.-+|++++..+.-.. ....+..+... .|. |+.+.++||||||||||+|++++|+..+..+ ++....
T Consensus 10 ~~~~tfd~Fvvg~~N~~-a~~~~~~~~~~------~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~--~~~~~~-- 78 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQ-AYNIIKNWQCG------FGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYI--IKDIFF-- 78 (214)
T ss_pred CCCCCchhhEecccHHH-HHHHHHHHHHc------cccCCCcceEEEECCCCCCHHHHHHHHHhccCCEE--cchhhh--
Confidence 34457999876654322 34445554432 222 3346799999999999999999999887532 221111
Q ss_pred hHHHHHHHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhc
Q 010133 276 NSELRKLLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTD 355 (517)
Q Consensus 276 ~~~L~~lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lD 355 (517)
.. ..+ ....+|+|||||.+ ....+..++|.+.
T Consensus 79 ~~---~~~---~~~d~lliDdi~~~------------------------------------------~~~~lf~l~N~~~ 110 (214)
T PRK06620 79 NE---EIL---EKYNAFIIEDIENW------------------------------------------QEPALLHIFNIIN 110 (214)
T ss_pred ch---hHH---hcCCEEEEeccccc------------------------------------------hHHHHHHHHHHHH
Confidence 11 111 24479999999953 1234556666653
Q ss_pred CCcccCCCceEEEEEeCCCCC--CChhhhccCCce--eeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHH
Q 010133 356 GLWSCCGSEKIFVFTTNHIEK--LDPALLRSGRMD--MHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELE 425 (517)
Q Consensus 356 g~~s~~~~~~iiI~TTN~~e~--LD~ALlRpGR~d--~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~ 425 (517)
. .+..++|.++..|.. + |+|+. |+. ..+.+.+|+.+.+..+++..+...+..++++.++.|.
T Consensus 111 e-----~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~ 176 (214)
T PRK06620 111 E-----KQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLL 176 (214)
T ss_pred h-----cCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 2 134666666655544 5 88988 885 3689999999999888877654333333344443333
No 134
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.37 E-value=1e-11 Score=110.31 Aligned_cols=115 Identities=28% Similarity=0.412 Sum_probs=80.7
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccccChHHHHH-----------HHHhccCCcEEEEccchhhhc
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVHNNSELRK-----------LLMKTSSKSIIVIEDIDCSIS 302 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~~~~~L~~-----------lf~~~~~~sII~iDdID~~~~ 302 (517)
.++++++||||||||++++++++.+ +.+++.+++........... .......+.+|+|||++.+.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~- 97 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS- 97 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh-
Confidence 3579999999999999999999999 99999999987644332221 12223478999999999751
Q ss_pred cccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCccc--CCCceEEEEEeCCCC--CCC
Q 010133 303 LSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSC--CGSEKIFVFTTNHIE--KLD 378 (517)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~--~~~~~iiI~TTN~~e--~LD 378 (517)
......++..+...... ...+..+|++||... .++
T Consensus 98 -----------------------------------------~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~ 136 (151)
T cd00009 98 -----------------------------------------RGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLD 136 (151)
T ss_pred -----------------------------------------HHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcC
Confidence 11233444444433211 123467888888777 788
Q ss_pred hhhhccCCceeeEeccC
Q 010133 379 PALLRSGRMDMHIFMSY 395 (517)
Q Consensus 379 ~ALlRpGR~d~~I~~~~ 395 (517)
+.+.. |++.+|.+++
T Consensus 137 ~~~~~--r~~~~i~~~~ 151 (151)
T cd00009 137 RALYD--RLDIRIVIPL 151 (151)
T ss_pred hhHHh--hhccEeecCC
Confidence 88888 9998888763
No 135
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.36 E-value=1.1e-12 Score=117.91 Aligned_cols=105 Identities=26% Similarity=0.385 Sum_probs=74.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccChHHHHHHHHh---------------ccCCcEEEEccchhhhcc
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNNSELRKLLMK---------------TSSKSIIVIEDIDCSISL 303 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~~~~L~~lf~~---------------~~~~sII~iDdID~~~~~ 303 (517)
++||+||||||||+||+.+|..++.+++.++++...+..+|.....- ...++|+|||||+.+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a--- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRA--- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG----
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccC---
Confidence 48999999999999999999999999999999987666655332211 125789999999975
Q ss_pred ccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCccc----------CCC-----ceEEE
Q 010133 304 SNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSC----------CGS-----EKIFV 368 (517)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~----------~~~-----~~iiI 368 (517)
....+..|++.+|.-.-. ... +..+|
T Consensus 78 ---------------------------------------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii 118 (139)
T PF07728_consen 78 ---------------------------------------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRII 118 (139)
T ss_dssp ----------------------------------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEE
T ss_pred ---------------------------------------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEE
Confidence 133455555555432100 011 37899
Q ss_pred EEeCCCC----CCChhhhccCCc
Q 010133 369 FTTNHIE----KLDPALLRSGRM 387 (517)
Q Consensus 369 ~TTN~~e----~LD~ALlRpGR~ 387 (517)
+|+|..+ .+++||++ ||
T Consensus 119 ~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 119 ATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp EEESSST--TTTTCHHHHT--T-
T ss_pred EEEcCCCCCcCcCCHHHHh--hC
Confidence 9999988 89999999 87
No 136
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.35 E-value=4.2e-11 Score=123.04 Aligned_cols=155 Identities=20% Similarity=0.286 Sum_probs=101.0
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh-------CCceEE--E
Q 010133 198 HPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL-------GYDIYD--L 268 (517)
Q Consensus 198 ~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l-------~~~i~~--l 268 (517)
.|-+|+.|+|.++.++.++-.+ +.. | ..++||+||||||||++++++|+.+ +.++-. +
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~---~~~-------~---~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTA---IDP-------G---IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHH---hcc-------C---CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 5678999999999887764321 111 1 1379999999999999999999998 332111 0
Q ss_pred ----eec------------------c------ccChHHHHHHHHh-----------ccCCcEEEEccchhhhcccccccc
Q 010133 269 ----ELT------------------E------VHNNSELRKLLMK-----------TSSKSIIVIEDIDCSISLSNRNKR 309 (517)
Q Consensus 269 ----~l~------------------~------~~~~~~L~~lf~~-----------~~~~sII~iDdID~~~~~~~~~~~ 309 (517)
++. . +...-.+...+.. .....+||||||+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl--------- 140 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLL--------- 140 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhC---------
Confidence 010 0 0011111112111 123469999999986
Q ss_pred CCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCC---------cccCCCceEEEEEeCCCC-CCCh
Q 010133 310 SNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGL---------WSCCGSEKIFVFTTNHIE-KLDP 379 (517)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~---------~s~~~~~~iiI~TTN~~e-~LD~ 379 (517)
...+++.|++.|+.- ........++|+|+|..+ .+++
T Consensus 141 ---------------------------------~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~ 187 (334)
T PRK13407 141 ---------------------------------EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRP 187 (334)
T ss_pred ---------------------------------CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCH
Confidence 345677788777432 111223457777888655 5899
Q ss_pred hhhccCCceeeEeccCCCH-HHHHHHHHHhc
Q 010133 380 ALLRSGRMDMHIFMSYCSY-PALLILLKNYL 409 (517)
Q Consensus 380 ALlRpGR~d~~I~~~~p~~-e~~~~l~~~~l 409 (517)
+|+. ||...|.+++|.. +++.++++...
T Consensus 188 aLld--RF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 188 QLLD--RFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred HHHh--hcceEEEcCCCCcHHHHHHHHHHhh
Confidence 9999 9999999999976 88888888754
No 137
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.35 E-value=2.1e-11 Score=131.66 Aligned_cols=202 Identities=21% Similarity=0.304 Sum_probs=129.5
Q ss_pred CCCceecccCCCCCcccccCChHHHHHHHHHHHHHHhc------------h-hHH--------HhhCCCCCcceEEeCCC
Q 010133 188 GHPWESVSFKHPSTFDTLAIDPEKKIEIMEDLKDFANG------------M-SFY--------QKTGRAWKRGYLLYGPP 246 (517)
Q Consensus 188 ~~~w~~~~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~------------~-~~y--------~~~G~~~~rg~LL~GpP 246 (517)
...| |....|..|.+|.+++.+...++..|+.|--. + .+. ...+.|.++-+||||||
T Consensus 258 ~kLW--Vdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~Gpp 335 (877)
T KOG1969|consen 258 DKLW--VDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPP 335 (877)
T ss_pred ccee--ecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCC
Confidence 3478 77889999999999999999999998876321 1 111 11356778889999999
Q ss_pred CCcHHHHHHHHHHHhCCceEEEeeccccChHHHHHHHHhc----------cCCcEEEEccchhhhc--------cccccc
Q 010133 247 GTGKSSMIAAMANYLGYDIYDLELTEVHNNSELRKLLMKT----------SSKSIIVIEDIDCSIS--------LSNRNK 308 (517)
Q Consensus 247 GTGKTsla~alA~~l~~~i~~l~l~~~~~~~~L~~lf~~~----------~~~sII~iDdID~~~~--------~~~~~~ 308 (517)
|-||||||+.+|.+.||.++.+|.++-.+...++.-+..+ ..|.+|+|||||-... +.....
T Consensus 336 GlGKTTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~~Vdvilslv~a~~ 415 (877)
T KOG1969|consen 336 GLGKTTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRAAVDVILSLVKATN 415 (877)
T ss_pred CCChhHHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCcHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999987766665544322 4789999999996420 000000
Q ss_pred cCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCce
Q 010133 309 RSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMD 388 (517)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d 388 (517)
+.. .| ...+.+...+.--+.+| .|-||+.+|.. .-|||+-=--+-
T Consensus 416 -k~~------------------~G--kq~~~~~~rkkkr~~~L------------~RPIICICNdL--YaPaLR~Lr~~A 460 (877)
T KOG1969|consen 416 -KQA------------------TG--KQAKKDKKRKKKRSKLL------------TRPIICICNDL--YAPALRPLRPFA 460 (877)
T ss_pred -chh------------------hc--Ccccchhhhhhhccccc------------cCCEEEEecCc--cchhhhhcccce
Confidence 000 00 00000011111111111 26688888854 458886211578
Q ss_pred eeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHH
Q 010133 389 MHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELED 426 (517)
Q Consensus 389 ~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~ 426 (517)
..|+|.+|...-..+-++..+..+....+...+..+.+
T Consensus 461 ~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~e 498 (877)
T KOG1969|consen 461 EIIAFVPPSQSRLVERLNEICHRENMRADSKALNALCE 498 (877)
T ss_pred EEEEecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHH
Confidence 88999999877766666666655554333344433333
No 138
>PHA02244 ATPase-like protein
Probab=99.35 E-value=1.8e-11 Score=125.76 Aligned_cols=134 Identities=20% Similarity=0.221 Sum_probs=91.2
Q ss_pred cCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccChHHH------
Q 010133 206 AIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNNSEL------ 279 (517)
Q Consensus 206 ~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~~~~L------ 279 (517)
++..........++..++... .++||+||||||||++|++||..++.+++.++.. .....+
T Consensus 99 ig~sp~~~~~~~ri~r~l~~~-----------~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l--~d~~~L~G~i~~ 165 (383)
T PHA02244 99 IASNPTFHYETADIAKIVNAN-----------IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI--MDEFELKGFIDA 165 (383)
T ss_pred cCCCHHHHHHHHHHHHHHhcC-----------CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC--hHHHhhcccccc
Confidence 344555555556677777652 4799999999999999999999999999988742 111111
Q ss_pred ----H--HHHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHh
Q 010133 280 ----R--KLLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNF 353 (517)
Q Consensus 280 ----~--~lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~ 353 (517)
. .++.......+|+|||||.+- ..++..|...
T Consensus 166 ~g~~~dgpLl~A~~~GgvLiLDEId~a~------------------------------------------p~vq~~L~~l 203 (383)
T PHA02244 166 NGKFHETPFYEAFKKGGLFFIDEIDASI------------------------------------------PEALIIINSA 203 (383)
T ss_pred cccccchHHHHHhhcCCEEEEeCcCcCC------------------------------------------HHHHHHHHHH
Confidence 1 223334567999999999751 2233444444
Q ss_pred hc--------CCcccCCCceEEEEEeCCC-----------CCCChhhhccCCceeeEeccCCCH
Q 010133 354 TD--------GLWSCCGSEKIFVFTTNHI-----------EKLDPALLRSGRMDMHIFMSYCSY 398 (517)
Q Consensus 354 lD--------g~~s~~~~~~iiI~TTN~~-----------e~LD~ALlRpGR~d~~I~~~~p~~ 398 (517)
+| +... ...+..+|+|+|.+ ..|++|++. || .+|+|+||+.
T Consensus 204 Ld~r~l~l~g~~i~-~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF-v~I~~dyp~~ 263 (383)
T PHA02244 204 IANKFFDFADERVT-AHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF-APIEFDYDEK 263 (383)
T ss_pred hccCeEEecCcEEe-cCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-EEeeCCCCcH
Confidence 43 2111 12346788899863 578999999 99 6899999984
No 139
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.34 E-value=4.4e-11 Score=137.40 Aligned_cols=161 Identities=16% Similarity=0.320 Sum_probs=110.2
Q ss_pred cccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccccChHH
Q 010133 202 FDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVHNNSE 278 (517)
Q Consensus 202 f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~~~~~ 278 (517)
++.|+|.+...+.|...+......- ...+.| ...+||+||||||||++|++||+.+ +.+++.++|+.+.....
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl---~~~~~p-~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~ 642 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGL---SDPNRP-IGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHS 642 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcc---cCCCCC-CceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhh
Confidence 5568888888777776665543210 000111 1258999999999999999999987 45788999988744333
Q ss_pred HHHHH---------------Hh---ccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCC
Q 010133 279 LRKLL---------------MK---TSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGED 340 (517)
Q Consensus 279 L~~lf---------------~~---~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (517)
...++ .+ ..+.+||+|||||.+
T Consensus 643 ~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka---------------------------------------- 682 (857)
T PRK10865 643 VSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA---------------------------------------- 682 (857)
T ss_pred HHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC----------------------------------------
Confidence 33333 11 124489999999975
Q ss_pred CchhhHHHHHHHhhc-CCccc------CCCceEEEEEeCCC-------------------------CCCChhhhccCCce
Q 010133 341 GNNSITLSGLLNFTD-GLWSC------CGSEKIFVFTTNHI-------------------------EKLDPALLRSGRMD 388 (517)
Q Consensus 341 ~~~~~~ls~LLn~lD-g~~s~------~~~~~iiI~TTN~~-------------------------e~LD~ALlRpGR~d 388 (517)
.....+.|++.+| |.... .-.+.|||+|||.. ..+.|+|+. |+|
T Consensus 683 --~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld 758 (857)
T PRK10865 683 --HPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RID 758 (857)
T ss_pred --CHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCC
Confidence 2345677777775 32110 01235899999972 234588998 999
Q ss_pred eeEeccCCCHHHHHHHHHHhcC
Q 010133 389 MHIFMSYCSYPALLILLKNYLG 410 (517)
Q Consensus 389 ~~I~~~~p~~e~~~~l~~~~l~ 410 (517)
..|.|.+++.+....|++.++.
T Consensus 759 ~iivF~PL~~edl~~Iv~~~L~ 780 (857)
T PRK10865 759 EVVVFHPLGEQHIASIAQIQLQ 780 (857)
T ss_pred eeEecCCCCHHHHHHHHHHHHH
Confidence 9999999999999999988773
No 140
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=1e-10 Score=122.00 Aligned_cols=152 Identities=18% Similarity=0.296 Sum_probs=108.3
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC-------------
Q 010133 197 KHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY------------- 263 (517)
Q Consensus 197 ~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~------------- 263 (517)
.+|++|++|+|.+..++.+.+.+.. | ..+..|||+||+|+||+++|.++|+.+-.
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~-----------~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~ 80 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS-----------G-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPP 80 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccc
Confidence 5899999999999887777543332 1 22347999999999999999999998832
Q ss_pred ---------------------ceEEEeec--cc-------cChHHHHHHHHhc------cCCcEEEEccchhhhcccccc
Q 010133 264 ---------------------DIYDLELT--EV-------HNNSELRKLLMKT------SSKSIIVIEDIDCSISLSNRN 307 (517)
Q Consensus 264 ---------------------~i~~l~l~--~~-------~~~~~L~~lf~~~------~~~sII~iDdID~~~~~~~~~ 307 (517)
+++.+... +- -.-+.++.+.... ..+-||+|||+|.+
T Consensus 81 ~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m------- 153 (365)
T PRK07471 81 TSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM------- 153 (365)
T ss_pred ccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc-------
Confidence 11222110 00 0123455544332 25679999999976
Q ss_pred ccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCc
Q 010133 308 KRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRM 387 (517)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~ 387 (517)
.....+.||..++.. ....++|++|+.++.+.|.++. |+
T Consensus 154 -----------------------------------~~~aanaLLK~LEep----p~~~~~IL~t~~~~~llpti~S--Rc 192 (365)
T PRK07471 154 -----------------------------------NANAANALLKVLEEP----PARSLFLLVSHAPARLLPTIRS--RC 192 (365)
T ss_pred -----------------------------------CHHHHHHHHHHHhcC----CCCeEEEEEECCchhchHHhhc--cc
Confidence 345677888888764 2346888899999999999887 77
Q ss_pred eeeEeccCCCHHHHHHHHHHhc
Q 010133 388 DMHIFMSYCSYPALLILLKNYL 409 (517)
Q Consensus 388 d~~I~~~~p~~e~~~~l~~~~l 409 (517)
..|.|++++.++...++....
T Consensus 193 -~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 193 -RKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred -eEEECCCCCHHHHHHHHHHhc
Confidence 689999999999888887754
No 141
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.33 E-value=1.8e-11 Score=135.85 Aligned_cols=158 Identities=16% Similarity=0.283 Sum_probs=103.4
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh----------CCceE
Q 010133 197 KHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL----------GYDIY 266 (517)
Q Consensus 197 ~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l----------~~~i~ 266 (517)
..|.+|+.++|.+...+.+++.+. .+.+..++|+||||||||++|+++++.. +.+++
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~ia-------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv 214 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKVA-------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFV 214 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHHh-------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeE
Confidence 358899999999988777654331 1234579999999999999999998766 35788
Q ss_pred EEeeccccC-hHHHH----------------HHHHh------------ccCCcEEEEccchhhhccccccccCCCCCCCC
Q 010133 267 DLELTEVHN-NSELR----------------KLLMK------------TSSKSIIVIEDIDCSISLSNRNKRSNGSGSRG 317 (517)
Q Consensus 267 ~l~l~~~~~-~~~L~----------------~lf~~------------~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~ 317 (517)
.+++..+.. ...+. ..+.. ..+..+|||||++.+-
T Consensus 215 ~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld---------------- 278 (615)
T TIGR02903 215 EVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD---------------- 278 (615)
T ss_pred EEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC----------------
Confidence 998876531 11110 11111 1145799999999761
Q ss_pred CCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCC--------c----------------ccCCCceEEEE-EeC
Q 010133 318 NCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGL--------W----------------SCCGSEKIFVF-TTN 372 (517)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~--------~----------------s~~~~~~iiI~-TTN 372 (517)
......|+..|+.- + .......++|+ ||+
T Consensus 279 --------------------------~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~ 332 (615)
T TIGR02903 279 --------------------------PLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTR 332 (615)
T ss_pred --------------------------HHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccc
Confidence 11122233333110 0 00112244554 667
Q ss_pred CCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCC
Q 010133 373 HIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYE 412 (517)
Q Consensus 373 ~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~ 412 (517)
.++.++++|+. ||. .+.+++.+.+++..|++.++...
T Consensus 333 ~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il~~~a~~~ 369 (615)
T TIGR02903 333 DPEEINPALRS--RCA-EVFFEPLTPEDIALIVLNAAEKI 369 (615)
T ss_pred cccccCHHHHh--cee-EEEeCCCCHHHHHHHHHHHHHHc
Confidence 78899999998 986 57889999999999999876543
No 142
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.33 E-value=2.7e-11 Score=129.74 Aligned_cols=189 Identities=14% Similarity=0.286 Sum_probs=119.9
Q ss_pred CCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh-----CCceEEEeeccc
Q 010133 199 PSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL-----GYDIYDLELTEV 273 (517)
Q Consensus 199 p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l-----~~~i~~l~l~~~ 273 (517)
+.+|++++..+.. +.....+..+...+ |..+ .+++||||+|||||+|++|+++++ +..++.+++.++
T Consensus 111 ~~tFdnFv~g~~n-~~A~~aa~~~a~~~------~~~~-npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f 182 (450)
T PRK14087 111 ENTFENFVIGSSN-EQAFIAVQTVSKNP------GISY-NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEF 182 (450)
T ss_pred ccchhcccCCCcH-HHHHHHHHHHHhCc------Cccc-CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 4689998755543 22344455554432 3222 479999999999999999999976 467777777665
Q ss_pred cCh---------HHHHHHHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchh
Q 010133 274 HNN---------SELRKLLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNS 344 (517)
Q Consensus 274 ~~~---------~~L~~lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (517)
... ..+..+........+|+||||+.+. + .....
T Consensus 183 ~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~---~----------------------------------k~~~~ 225 (450)
T PRK14087 183 ARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLS---Y----------------------------------KEKTN 225 (450)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccCCEEEEecccccc---C----------------------------------CHHHH
Confidence 211 1233333344567899999999762 0 11123
Q ss_pred hHHHHHHHhhcCCcccCCCceEEEEEeCC-CC---CCChhhhccCCce--eeEeccCCCHHHHHHHHHHhcCCCCC--CC
Q 010133 345 ITLSGLLNFTDGLWSCCGSEKIFVFTTNH-IE---KLDPALLRSGRMD--MHIFMSYCSYPALLILLKNYLGYEES--DL 416 (517)
Q Consensus 345 ~~ls~LLn~lDg~~s~~~~~~iiI~TTN~-~e---~LD~ALlRpGR~d--~~I~~~~p~~e~~~~l~~~~l~~~~~--~~ 416 (517)
..+..++|.+..- + ..+|+|+|. |+ .+++.|.. ||. ..+.+.+|+.+++..+++..+...+. .+
T Consensus 226 e~lf~l~N~~~~~-----~-k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l 297 (450)
T PRK14087 226 EIFFTIFNNFIEN-----D-KQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEV 297 (450)
T ss_pred HHHHHHHHHHHHc-----C-CcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCC
Confidence 4455555555331 2 245666654 33 45789998 774 67789999999999999988765432 45
Q ss_pred ChHhHHHHHHhhCCCCCCHHHHHHHHH
Q 010133 417 EDETLKELEDVVGKAEMTPADISEVLI 443 (517)
Q Consensus 417 ~~~~~~~i~~l~~~~~~spadi~~~l~ 443 (517)
+++.+..|+.. ..-+++.+.+.|.
T Consensus 298 ~~evl~~Ia~~---~~gd~R~L~gaL~ 321 (450)
T PRK14087 298 TEEAINFISNY---YSDDVRKIKGSVS 321 (450)
T ss_pred CHHHHHHHHHc---cCCCHHHHHHHHH
Confidence 56666666664 2335566666554
No 143
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.32 E-value=1.1e-10 Score=121.13 Aligned_cols=151 Identities=21% Similarity=0.256 Sum_probs=105.4
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCc-------e----
Q 010133 197 KHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYD-------I---- 265 (517)
Q Consensus 197 ~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~-------i---- 265 (517)
.||+.|+.|+|.++.+..+...+ .. | ..+..+||+||+|+|||++|.++|+.+... .
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~----~~-------g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~ 84 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAY----RE-------G-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD 84 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHH----Hc-------C-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC
Confidence 59999999999998876664422 22 1 123479999999999999999999998541 1
Q ss_pred -------------------EEEeec--c-------ccChHHHHHH---HHhcc---CCcEEEEccchhhhccccccccCC
Q 010133 266 -------------------YDLELT--E-------VHNNSELRKL---LMKTS---SKSIIVIEDIDCSISLSNRNKRSN 311 (517)
Q Consensus 266 -------------------~~l~l~--~-------~~~~~~L~~l---f~~~~---~~sII~iDdID~~~~~~~~~~~~~ 311 (517)
+.+.-. . ...-+.++.+ |...+ ..-||+|||+|.+
T Consensus 85 ~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l----------- 153 (351)
T PRK09112 85 PDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM----------- 153 (351)
T ss_pred CCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-----------
Confidence 111100 0 0012334433 33322 4569999999986
Q ss_pred CCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeE
Q 010133 312 GSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHI 391 (517)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I 391 (517)
.....+.||..++... ...++|+.|+.++.|.|.++. |+ .++
T Consensus 154 -------------------------------~~~aanaLLk~LEEpp----~~~~fiLit~~~~~llptIrS--Rc-~~i 195 (351)
T PRK09112 154 -------------------------------NRNAANAILKTLEEPP----ARALFILISHSSGRLLPTIRS--RC-QPI 195 (351)
T ss_pred -------------------------------CHHHHHHHHHHHhcCC----CCceEEEEECChhhccHHHHh--hc-cEE
Confidence 2345677888887642 346777778889999999987 88 699
Q ss_pred eccCCCHHHHHHHHHHh
Q 010133 392 FMSYCSYPALLILLKNY 408 (517)
Q Consensus 392 ~~~~p~~e~~~~l~~~~ 408 (517)
.+++++.++...++...
T Consensus 196 ~l~pl~~~~~~~~L~~~ 212 (351)
T PRK09112 196 SLKPLDDDELKKALSHL 212 (351)
T ss_pred EecCCCHHHHHHHHHHh
Confidence 99999999998888874
No 144
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.31 E-value=2.8e-11 Score=124.71 Aligned_cols=154 Identities=19% Similarity=0.304 Sum_probs=101.4
Q ss_pred CCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC-------ceE-----
Q 010133 199 PSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY-------DIY----- 266 (517)
Q Consensus 199 p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~-------~i~----- 266 (517)
.-+|+.|+|.++.|..++..+.. |...|+||.||+|||||+++++++..+.. +|.
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~-------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~ 79 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVID-------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSD 79 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccC-------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCC
Confidence 34799999999999888664433 12248999999999999999999887731 111
Q ss_pred -----------------------EEeeccc---cChHH------HHHHHHhc-----------cCCcEEEEccchhhhcc
Q 010133 267 -----------------------DLELTEV---HNNSE------LRKLLMKT-----------SSKSIIVIEDIDCSISL 303 (517)
Q Consensus 267 -----------------------~l~l~~~---~~~~~------L~~lf~~~-----------~~~sII~iDdID~~~~~ 303 (517)
.+.+..+ .+++. +...|... ....||+||||+.+
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL--- 156 (350)
T CHL00081 80 PELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL--- 156 (350)
T ss_pred hhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC---
Confidence 0000000 01111 22222211 23589999999986
Q ss_pred ccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhc---------CCcccCCCceEEEEEeCCC
Q 010133 304 SNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTD---------GLWSCCGSEKIFVFTTNHI 374 (517)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lD---------g~~s~~~~~~iiI~TTN~~ 374 (517)
...+.+.||+.|+ |.........++|+|.|..
T Consensus 157 ---------------------------------------~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~ 197 (350)
T CHL00081 157 ---------------------------------------DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPE 197 (350)
T ss_pred ---------------------------------------CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcc
Confidence 2345666777774 2221122334556666755
Q ss_pred C-CCChhhhccCCceeeEeccCCC-HHHHHHHHHHhc
Q 010133 375 E-KLDPALLRSGRMDMHIFMSYCS-YPALLILLKNYL 409 (517)
Q Consensus 375 e-~LD~ALlRpGR~d~~I~~~~p~-~e~~~~l~~~~l 409 (517)
+ .|.++|+. ||.++|.+++|+ .+.+.+|++...
T Consensus 198 eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~~il~~~~ 232 (350)
T CHL00081 198 EGELRPQLLD--RFGMHAEIRTVKDPELRVKIVEQRT 232 (350)
T ss_pred cCCCCHHHHH--HhCceeecCCCCChHHHHHHHHhhh
Confidence 5 59999999 999999999997 688888888754
No 145
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.31 E-value=2.1e-11 Score=130.55 Aligned_cols=170 Identities=18% Similarity=0.305 Sum_probs=128.0
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCce-----------
Q 010133 197 KHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDI----------- 265 (517)
Q Consensus 197 ~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i----------- 265 (517)
..|.+|++|+|.+.....|...+..=.- ..+|||.||-||||||+|+.+|.-+|+.-
T Consensus 10 yRP~~F~evvGQe~v~~~L~nal~~~ri------------~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~ 77 (515)
T COG2812 10 YRPKTFDDVVGQEHVVKTLSNALENGRI------------AHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCI 77 (515)
T ss_pred hCcccHHHhcccHHHHHHHHHHHHhCcc------------hhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhh
Confidence 4799999999998887776554432111 23799999999999999999999886541
Q ss_pred -------------EEEeeccccChHHHHHHHHhcc------CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCC
Q 010133 266 -------------YDLELTEVHNNSELRKLLMKTS------SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYE 326 (517)
Q Consensus 266 -------------~~l~l~~~~~~~~L~~lf~~~~------~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (517)
+.+|..+-.+-+++|.+..+.. ..-|.+|||++.+
T Consensus 78 ~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML-------------------------- 131 (515)
T COG2812 78 SCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML-------------------------- 131 (515)
T ss_pred hhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh--------------------------
Confidence 1222222233466777776652 3469999999987
Q ss_pred cccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHH
Q 010133 327 PEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLK 406 (517)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~ 406 (517)
+...++.||.-+..- ...+++|++|..+.++++.++. |+ .+..|..-+.+++...+.
T Consensus 132 ----------------S~~afNALLKTLEEP----P~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~ 188 (515)
T COG2812 132 ----------------SKQAFNALLKTLEEP----PSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLA 188 (515)
T ss_pred ----------------hHHHHHHHhcccccC----ccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHH
Confidence 455788899888764 4558999999999999999998 77 677889999999999999
Q ss_pred HhcCCCCCCCChHhHHHHHHh
Q 010133 407 NYLGYEESDLEDETLKELEDV 427 (517)
Q Consensus 407 ~~l~~~~~~~~~~~~~~i~~l 427 (517)
.++..++...+...+..|++.
T Consensus 189 ~i~~~E~I~~e~~aL~~ia~~ 209 (515)
T COG2812 189 AILDKEGINIEEDALSLIARA 209 (515)
T ss_pred HHHHhcCCccCHHHHHHHHHH
Confidence 999887776666655555554
No 146
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=3.1e-11 Score=133.87 Aligned_cols=198 Identities=22% Similarity=0.284 Sum_probs=136.1
Q ss_pred CcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh----------CCceEEEee
Q 010133 201 TFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL----------GYDIYDLEL 270 (517)
Q Consensus 201 ~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l----------~~~i~~l~l 270 (517)
.+|.|+|.++...++++.|.+..++ +-+|.|+||+|||.++..+|... +..+|.+|+
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KN-------------NPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~ 234 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKN-------------NPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL 234 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCC-------------CCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecH
Confidence 5899999999999998888877665 68999999999999999999876 788999999
Q ss_pred ccccC--------hHHHHHHHHhcc--CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCC-C
Q 010133 271 TEVHN--------NSELRKLLMKTS--SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGG-E 339 (517)
Q Consensus 271 ~~~~~--------~~~L~~lf~~~~--~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 339 (517)
..+.. +..|+.++.+.. .+.|||||||+.+++ ++...+ .
T Consensus 235 g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVG------------------------------AG~~~G~a 284 (786)
T COG0542 235 GSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVG------------------------------AGATEGGA 284 (786)
T ss_pred HHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcC------------------------------CCcccccc
Confidence 98842 567888877653 489999999999852 111111 1
Q ss_pred CCchhhHHHHHHHhhcCCcccCCCceEEEEEeC------CCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCC-
Q 010133 340 DGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTN------HIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYE- 412 (517)
Q Consensus 340 ~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN------~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~- 412 (517)
....+.....| .. ++.-+|++|. +.++ |+||-| || ..|.+..|+.++-..|++..-...
T Consensus 285 ~DAaNiLKPaL---------AR-GeL~~IGATT~~EYRk~iEK-D~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~~yE 350 (786)
T COG0542 285 MDAANLLKPAL---------AR-GELRCIGATTLDEYRKYIEK-DAALER--RF-QKVLVDEPSVEDTIAILRGLKERYE 350 (786)
T ss_pred cchhhhhHHHH---------hc-CCeEEEEeccHHHHHHHhhh-chHHHh--cC-ceeeCCCCCHHHHHHHHHHHHHHHH
Confidence 11222222222 12 3444555443 4455 999999 99 689999999999888887543222
Q ss_pred ---CCCCChHhHHHHHHhhCCCCCCHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh
Q 010133 413 ---ESDLEDETLKELEDVVGKAEMTPADISEVLIKNKRDKCKAVRELLETLKVKAEK 466 (517)
Q Consensus 413 ---~~~~~~~~~~~i~~l~~~~~~spadi~~~l~~~~~~~~~al~~l~~~l~~~~~~ 466 (517)
+..+.++.+... +.+..-.+..+.-|++|++-+.++....+..
T Consensus 351 ~hH~V~i~D~Al~aA-----------v~LS~RYI~dR~LPDKAIDLiDeA~a~~~l~ 396 (786)
T COG0542 351 AHHGVRITDEALVAA-----------VTLSDRYIPDRFLPDKAIDLLDEAGARVRLE 396 (786)
T ss_pred HccCceecHHHHHHH-----------HHHHHhhcccCCCCchHHHHHHHHHHHHHhc
Confidence 112223332222 3444445566778999998777777666544
No 147
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.31 E-value=7.2e-11 Score=135.95 Aligned_cols=159 Identities=16% Similarity=0.321 Sum_probs=109.0
Q ss_pred ccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccccChHHH
Q 010133 203 DTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVHNNSEL 279 (517)
Q Consensus 203 ~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~~~~~L 279 (517)
..|+|.+...+.|.+.+......- .... .+...+||+||||||||++|++||..+ +.+++.++++.......+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl---~~~~-~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~ 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGL---SDPN-RPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSV 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccC---CCCC-CCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchH
Confidence 457888888777777666543210 0000 112358999999999999999999988 578999999887443333
Q ss_pred HHHH---------------H---hccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCC
Q 010133 280 RKLL---------------M---KTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDG 341 (517)
Q Consensus 280 ~~lf---------------~---~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (517)
..++ . ...+.+||||||||.+
T Consensus 641 ~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka----------------------------------------- 679 (852)
T TIGR03346 641 ARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA----------------------------------------- 679 (852)
T ss_pred HHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC-----------------------------------------
Confidence 3322 1 1234589999999975
Q ss_pred chhhHHHHHHHhhc-CCccc-C-----CCceEEEEEeCCCC-------------------------CCChhhhccCCcee
Q 010133 342 NNSITLSGLLNFTD-GLWSC-C-----GSEKIFVFTTNHIE-------------------------KLDPALLRSGRMDM 389 (517)
Q Consensus 342 ~~~~~ls~LLn~lD-g~~s~-~-----~~~~iiI~TTN~~e-------------------------~LD~ALlRpGR~d~ 389 (517)
.....+.||+.+| |.... . -.+.|||+|||... .+.|.|+. |+|.
T Consensus 680 -~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~ 756 (852)
T TIGR03346 680 -HPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDE 756 (852)
T ss_pred -CHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCe
Confidence 2345677888875 32111 0 13468999999721 13467776 9999
Q ss_pred eEeccCCCHHHHHHHHHHhc
Q 010133 390 HIFMSYCSYPALLILLKNYL 409 (517)
Q Consensus 390 ~I~~~~p~~e~~~~l~~~~l 409 (517)
.|.|.+++.+....|+...+
T Consensus 757 IivF~PL~~e~l~~I~~l~L 776 (852)
T TIGR03346 757 IVVFHPLGREQIARIVEIQL 776 (852)
T ss_pred EEecCCcCHHHHHHHHHHHH
Confidence 99999999999998888765
No 148
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.31 E-value=5.3e-11 Score=112.82 Aligned_cols=123 Identities=27% Similarity=0.339 Sum_probs=89.6
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHhCCc------------------------eEEEeeccc-cChHHHHHHHHhc-----
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYLGYD------------------------IYDLELTEV-HNNSELRKLLMKT----- 286 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l~~~------------------------i~~l~l~~~-~~~~~L~~lf~~~----- 286 (517)
+..||||||||+|||++++++|+.+... +..++.... ..-+.++.+....
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 93 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTPQ 93 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCcc
Confidence 4579999999999999999999997432 333332211 1234565555443
Q ss_pred -cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCce
Q 010133 287 -SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEK 365 (517)
Q Consensus 287 -~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~ 365 (517)
..+-||+|||+|.+ .....+.||..|+.. ....
T Consensus 94 ~~~~kviiide~~~l------------------------------------------~~~~~~~Ll~~le~~----~~~~ 127 (188)
T TIGR00678 94 ESGRRVVIIEDAERM------------------------------------------NEAAANALLKTLEEP----PPNT 127 (188)
T ss_pred cCCeEEEEEechhhh------------------------------------------CHHHHHHHHHHhcCC----CCCe
Confidence 24579999999987 123466788888764 2346
Q ss_pred EEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHh
Q 010133 366 IFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNY 408 (517)
Q Consensus 366 iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~ 408 (517)
++|++||.+..|.+++.+ |. ..+.+.+|+.++...++...
T Consensus 128 ~~il~~~~~~~l~~~i~s--r~-~~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 128 LFILITPSPEKLLPTIRS--RC-QVLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred EEEEEECChHhChHHHHh--hc-EEeeCCCCCHHHHHHHHHHc
Confidence 788888888999999998 77 58999999999988777765
No 149
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.30 E-value=2.9e-11 Score=135.58 Aligned_cols=247 Identities=16% Similarity=0.130 Sum_probs=147.7
Q ss_pred CCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccccCh
Q 010133 200 STFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVHNN 276 (517)
Q Consensus 200 ~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~~~ 276 (517)
.+|+.+++.+....++++.+....+.. .++||+|+|||||+++|++|-+.. +.+|+.+||..+..+
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~~~-----------~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAKSS-----------FPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhCcC-----------CCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 368899999999888888888877653 469999999999999999998765 479999999998543
Q ss_pred HHHHHHHHh--------------ccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCc
Q 010133 277 SELRKLLMK--------------TSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGN 342 (517)
Q Consensus 277 ~~L~~lf~~--------------~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (517)
.-...+|.. .....+|||||||.+
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l------------------------------------------ 428 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYL------------------------------------------ 428 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhC------------------------------------------
Confidence 223445532 134689999999987
Q ss_pred hhhHHHHHHHhhcCCc-ccCCC------ceEEEEEeCCCCCCChhhhccCCc---------eeeEeccCCC--HHHHHHH
Q 010133 343 NSITLSGLLNFTDGLW-SCCGS------EKIFVFTTNHIEKLDPALLRSGRM---------DMHIFMSYCS--YPALLIL 404 (517)
Q Consensus 343 ~~~~ls~LLn~lDg~~-s~~~~------~~iiI~TTN~~e~LD~ALlRpGR~---------d~~I~~~~p~--~e~~~~l 404 (517)
.......|+..++.-. ..-|+ ..-||+|||.. + ..+...|+| ...|.+|+.. .+++..|
T Consensus 429 ~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~--l-~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L 505 (638)
T PRK11388 429 SPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTAD--L-AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPAL 505 (638)
T ss_pred CHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCC--H-HHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHH
Confidence 1234455666664321 11111 23477777643 1 334444555 4566676663 4677777
Q ss_pred HHHhcCCC------CCCCChHhHHHHHHhhCCCCCCHHHHHHHHHH---hcccHHHHHHHHHHHHHHHHHhhhhcCCccc
Q 010133 405 LKNYLGYE------ESDLEDETLKELEDVVGKAEMTPADISEVLIK---NKRDKCKAVRELLETLKVKAEKNVKHGGIIV 475 (517)
Q Consensus 405 ~~~~l~~~------~~~~~~~~~~~i~~l~~~~~~spadi~~~l~~---~~~~~~~al~~l~~~l~~~~~~~~~~~~~~~ 475 (517)
+..|+... ...++.+.+..|...-|..++ .++.+++.. ...+....++.+-..+...... ........
T Consensus 506 ~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNv--reL~~~l~~~~~~~~~~~i~~~~lp~~~~~~~~~-~~~~~~~~ 582 (638)
T PRK11388 506 VNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGND--FELRSVIENLALSSDNGRIRLSDLPEHLFTEQAT-DDVSATRL 582 (638)
T ss_pred HHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChH--HHHHHHHHHHHHhCCCCeecHHHCchhhhccccc-cccccccc
Confidence 77776322 123556666666666555555 444444332 1122233333333233211000 00000000
Q ss_pred cCCChhHHHHHHHhhcCCCCccchhhhhccC
Q 010133 476 KNSDYEEEEQEKRALESPIEGSDIEDANNCE 506 (517)
Q Consensus 476 ~~~~~~~~~~~~r~~~~~l~~~~~~~~~~~~ 506 (517)
.......+.|++.|...++..+.|++++|+
T Consensus 583 -~~~~~l~~~E~~~i~~al~~~~gn~~~aA~ 612 (638)
T PRK11388 583 -STSLSLAELEKEAIINAAQVCGGRIQEMAA 612 (638)
T ss_pred -ccchhHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 000125678899999999999999888754
No 150
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.28 E-value=4.3e-11 Score=123.49 Aligned_cols=129 Identities=26% Similarity=0.279 Sum_probs=92.0
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccChHHHHHHH--H----------hccCC------cEEEEccchh
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNNSELRKLL--M----------KTSSK------SIIVIEDIDC 299 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~~~~L~~lf--~----------~~~~~------sII~iDdID~ 299 (517)
+.+||-||||||||+||+++|..++.+++.+.|+.-...+++.... . -.+.| +|+++|||+.
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInr 123 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINR 123 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEecccc
Confidence 4799999999999999999999999999999999765544432111 1 01111 3999999998
Q ss_pred hhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCC-------c-ccCCCceEEEEEe
Q 010133 300 SISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGL-------W-SCCGSEKIFVFTT 371 (517)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~-------~-s~~~~~~iiI~TT 371 (517)
. ...+.+.||..|+.. . -.-....++|+|+
T Consensus 124 a------------------------------------------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~ 161 (329)
T COG0714 124 A------------------------------------------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQ 161 (329)
T ss_pred C------------------------------------------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEcc
Confidence 5 235667777777642 1 0112345778888
Q ss_pred C-----CCCCCChhhhccCCceeeEeccCC-CHHHHHHHHHHhcC
Q 010133 372 N-----HIEKLDPALLRSGRMDMHIFMSYC-SYPALLILLKNYLG 410 (517)
Q Consensus 372 N-----~~e~LD~ALlRpGR~d~~I~~~~p-~~e~~~~l~~~~l~ 410 (517)
| ....|++|+++ ||-..+.++|| ..++...+......
T Consensus 162 Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~~~~~ 204 (329)
T COG0714 162 NPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILARVGG 204 (329)
T ss_pred CccccCCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHHhCcc
Confidence 9 44568999999 99999999999 55555555555443
No 151
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.25 E-value=1.8e-10 Score=132.12 Aligned_cols=155 Identities=19% Similarity=0.264 Sum_probs=106.2
Q ss_pred ccccCChHHHHHHHHHHHHHHhchhHHHhhCC-CCCcc-eEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccccChH
Q 010133 203 DTLAIDPEKKIEIMEDLKDFANGMSFYQKTGR-AWKRG-YLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVHNNS 277 (517)
Q Consensus 203 ~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~-~~~rg-~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~~~~ 277 (517)
+.|+|.++..+.|.+.+.....+ +.. ..|.| +||+||||||||.+|++||..+ ...++.+++++.....
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~g------l~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAG------LEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAH 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcC------CCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhh
Confidence 46778888777777666543221 111 12344 7999999999999999999998 4578899988764332
Q ss_pred HH-------------------HHHHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCC
Q 010133 278 EL-------------------RKLLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGG 338 (517)
Q Consensus 278 ~L-------------------~~lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (517)
.. ...+.. .+.|||+|||||.+
T Consensus 640 ~~~~l~g~~~gyvg~~~~g~L~~~v~~-~p~svvllDEieka-------------------------------------- 680 (852)
T TIGR03345 640 TVSRLKGSPPGYVGYGEGGVLTEAVRR-KPYSVVLLDEVEKA-------------------------------------- 680 (852)
T ss_pred hhccccCCCCCcccccccchHHHHHHh-CCCcEEEEechhhc--------------------------------------
Confidence 22 222222 46799999999975
Q ss_pred CCCchhhHHHHHHHhhcCCc-cc-C-----CCceEEEEEeCCC-----------C------------------CCChhhh
Q 010133 339 EDGNNSITLSGLLNFTDGLW-SC-C-----GSEKIFVFTTNHI-----------E------------------KLDPALL 382 (517)
Q Consensus 339 ~~~~~~~~ls~LLn~lDg~~-s~-~-----~~~~iiI~TTN~~-----------e------------------~LD~ALl 382 (517)
....++.|+..+|.-. .. . -.+.+||+|||.. + .+.|+|+
T Consensus 681 ----~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfl 756 (852)
T TIGR03345 681 ----HPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFL 756 (852)
T ss_pred ----CHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHh
Confidence 2345666777776321 11 1 1347899999841 1 1457788
Q ss_pred ccCCceeeEeccCCCHHHHHHHHHHhc
Q 010133 383 RSGRMDMHIFMSYCSYPALLILLKNYL 409 (517)
Q Consensus 383 RpGR~d~~I~~~~p~~e~~~~l~~~~l 409 (517)
. |++ .|.|.+.+.++...|+...+
T Consensus 757 n--Ri~-iI~F~pLs~e~l~~Iv~~~L 780 (852)
T TIGR03345 757 G--RMT-VIPYLPLDDDVLAAIVRLKL 780 (852)
T ss_pred c--cee-EEEeCCCCHHHHHHHHHHHH
Confidence 7 998 78999999999999988766
No 152
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.2e-10 Score=129.14 Aligned_cols=159 Identities=20% Similarity=0.308 Sum_probs=115.2
Q ss_pred ccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhC---CceEEEeeccccChHHH
Q 010133 203 DTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLG---YDIYDLELTEVHNNSEL 279 (517)
Q Consensus 203 ~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~---~~i~~l~l~~~~~~~~L 279 (517)
..|+|.++....|.+.+..-..+ ...-..| -..+||.||.|+|||-||++||..+. -.++.+|+|+......+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaG---L~dp~rP-igsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsV 566 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAG---LGDPNRP-IGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSV 566 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcC---CCCCCCC-ceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHH
Confidence 45777777766665544432221 1111111 12588999999999999999999996 88999999999777777
Q ss_pred HHHHHhc------------------cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCC
Q 010133 280 RKLLMKT------------------SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDG 341 (517)
Q Consensus 280 ~~lf~~~------------------~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (517)
.+|...- .+.|||+||||+..
T Consensus 567 SrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKA----------------------------------------- 605 (786)
T COG0542 567 SRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKA----------------------------------------- 605 (786)
T ss_pred HHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhc-----------------------------------------
Confidence 7776432 24699999999975
Q ss_pred chhhHHHHHHHhhcCCcccCC-------CceEEEEEeCCC----------------------------CCCChhhhccCC
Q 010133 342 NNSITLSGLLNFTDGLWSCCG-------SEKIFVFTTNHI----------------------------EKLDPALLRSGR 386 (517)
Q Consensus 342 ~~~~~ls~LLn~lDg~~s~~~-------~~~iiI~TTN~~----------------------------e~LD~ALlRpGR 386 (517)
+...++-||+.||.-.-..+ .+.|||||||-- ..+.|+++. |
T Consensus 606 -HpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--R 682 (786)
T COG0542 606 -HPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--R 682 (786)
T ss_pred -CHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--h
Confidence 45688899999984322222 235999999832 012477787 9
Q ss_pred ceeeEeccCCCHHHHHHHHHHhc
Q 010133 387 MDMHIFMSYCSYPALLILLKNYL 409 (517)
Q Consensus 387 ~d~~I~~~~p~~e~~~~l~~~~l 409 (517)
+|..|.|.+.+.+....|+..++
T Consensus 683 id~II~F~~L~~~~l~~Iv~~~L 705 (786)
T COG0542 683 IDEIIPFNPLSKEVLERIVDLQL 705 (786)
T ss_pred cccEEeccCCCHHHHHHHHHHHH
Confidence 99999999999999999998876
No 153
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.24 E-value=6.8e-11 Score=123.22 Aligned_cols=70 Identities=17% Similarity=0.249 Sum_probs=50.0
Q ss_pred cccCChHHHHHHHHHHHHHHhchhHHHhhCC-CCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccc
Q 010133 204 TLAIDPEKKIEIMEDLKDFANGMSFYQKTGR-AWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEV 273 (517)
Q Consensus 204 tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~-~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~ 273 (517)
.|+|.++.|+.+...+..-.++...-..... -.+.++||+||||||||++|++||..++.+++.++++.+
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f 86 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 86 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhh
Confidence 3788899988886666432222111111111 125789999999999999999999999999999988754
No 154
>PRK09087 hypothetical protein; Validated
Probab=99.24 E-value=2.3e-10 Score=111.78 Aligned_cols=166 Identities=13% Similarity=0.138 Sum_probs=98.9
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccC
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHN 275 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~ 275 (517)
..+..+|++++..+.-.. .+..+..+. +.+ .+.++||||+|+|||+|++++|...+..++ +...+ .
T Consensus 14 ~~~~~~~~~Fi~~~~N~~-a~~~l~~~~---------~~~-~~~l~l~G~~GsGKThLl~~~~~~~~~~~i--~~~~~-~ 79 (226)
T PRK09087 14 HDPAYGRDDLLVTESNRA-AVSLVDHWP---------NWP-SPVVVLAGPVGSGKTHLASIWREKSDALLI--HPNEI-G 79 (226)
T ss_pred CCCCCChhceeecCchHH-HHHHHHhcc---------cCC-CCeEEEECCCCCCHHHHHHHHHHhcCCEEe--cHHHc-c
Confidence 344468999886443222 233222211 111 234899999999999999999988765533 33322 1
Q ss_pred hHHHHHHHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhc
Q 010133 276 NSELRKLLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTD 355 (517)
Q Consensus 276 ~~~L~~lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lD 355 (517)
...+. ... ..+|+|||||.+- ..+..+-.++|.+.
T Consensus 80 ~~~~~----~~~-~~~l~iDDi~~~~----------------------------------------~~~~~lf~l~n~~~ 114 (226)
T PRK09087 80 SDAAN----AAA-EGPVLIEDIDAGG----------------------------------------FDETGLFHLINSVR 114 (226)
T ss_pred hHHHH----hhh-cCeEEEECCCCCC----------------------------------------CCHHHHHHHHHHHH
Confidence 11121 111 2588899999741 01223555555543
Q ss_pred CCcccCCCceEEEEEeCCCCC---CChhhhccCCce--eeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHh
Q 010133 356 GLWSCCGSEKIFVFTTNHIEK---LDPALLRSGRMD--MHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDV 427 (517)
Q Consensus 356 g~~s~~~~~~iiI~TTN~~e~---LD~ALlRpGR~d--~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l 427 (517)
. . +..+||.++..|.. ..|+|+. |+. ..+++..|+.+.+..+++..+...+..++++.++.|.+.
T Consensus 115 ~---~--g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~ 184 (226)
T PRK09087 115 Q---A--GTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSR 184 (226)
T ss_pred h---C--CCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 2 1 23455555444443 3688888 775 788999999999999999887655544555555555443
No 155
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.24 E-value=1.3e-09 Score=111.74 Aligned_cols=148 Identities=14% Similarity=0.189 Sum_probs=106.8
Q ss_pred CcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC--------ceEEEeecc
Q 010133 201 TFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY--------DIYDLELTE 272 (517)
Q Consensus 201 ~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~--------~i~~l~l~~ 272 (517)
+|++|+|.+..++.+.+.+. . ...+..||||||+|+|||++|.++|..+.. +++.+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~----~--------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSII----K--------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHH----c--------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 68999999888777755442 1 123458999999999999999999998732 333333211
Q ss_pred --ccChHHHHHHHHhc---c---CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchh
Q 010133 273 --VHNNSELRKLLMKT---S---SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNS 344 (517)
Q Consensus 273 --~~~~~~L~~lf~~~---~---~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (517)
..+-..++.+.... + ..-|++||++|.+ +.
T Consensus 70 ~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m------------------------------------------~~ 107 (313)
T PRK05564 70 KKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM------------------------------------------TE 107 (313)
T ss_pred CCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhc------------------------------------------CH
Confidence 11334577666532 2 4579999999986 23
Q ss_pred hHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhc
Q 010133 345 ITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYL 409 (517)
Q Consensus 345 ~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l 409 (517)
...+.||..++.. ..+.++|++|++++.|-|+++. |. .++.|.+|+.++....+...+
T Consensus 108 ~a~naLLK~LEep----p~~t~~il~~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 108 QAQNAFLKTIEEP----PKGVFIILLCENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred HHHHHHHHHhcCC----CCCeEEEEEeCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHh
Confidence 3567888888864 3457788888889999999998 77 589999999998877776543
No 156
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.23 E-value=8.8e-11 Score=122.34 Aligned_cols=70 Identities=16% Similarity=0.239 Sum_probs=49.7
Q ss_pred cccCChHHHHHHHHHHHHHHhchhHHHhh-CCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccc
Q 010133 204 TLAIDPEKKIEIMEDLKDFANGMSFYQKT-GRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEV 273 (517)
Q Consensus 204 tv~~~~~~k~~i~~~l~~fl~~~~~y~~~-G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~ 273 (517)
.|+|.++.|+.+.-.+..-.++...-..+ +-..|+++||+||||||||+++++||..++.+++.++.+.+
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~ 83 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 83 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeeccee
Confidence 36788888888765554432221111111 12235799999999999999999999999999999997643
No 157
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.23 E-value=2.3e-10 Score=131.49 Aligned_cols=160 Identities=18% Similarity=0.317 Sum_probs=104.6
Q ss_pred ccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccccChHHH
Q 010133 203 DTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVHNNSEL 279 (517)
Q Consensus 203 ~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~~~~~L 279 (517)
+.|+|.+...+.|.+.+..-... ....+.| ...+||+||||||||+||++||..+ +.+++.+++++......+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~g---l~~~~~p-~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVG---LKNPNRP-IASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhc---ccCCCCC-ceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH
Confidence 45677777766665544332111 0001111 1248999999999999999999988 467888888876432222
Q ss_pred HHHH----------------Hh--ccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCC
Q 010133 280 RKLL----------------MK--TSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDG 341 (517)
Q Consensus 280 ~~lf----------------~~--~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (517)
.+++ .. ..+.+||+|||||.+
T Consensus 585 ~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka----------------------------------------- 623 (821)
T CHL00095 585 SKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA----------------------------------------- 623 (821)
T ss_pred HHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhC-----------------------------------------
Confidence 2221 11 124599999999975
Q ss_pred chhhHHHHHHHhhcCCc-cc------CCCceEEEEEeCCCCC-------------------------------------C
Q 010133 342 NNSITLSGLLNFTDGLW-SC------CGSEKIFVFTTNHIEK-------------------------------------L 377 (517)
Q Consensus 342 ~~~~~ls~LLn~lDg~~-s~------~~~~~iiI~TTN~~e~-------------------------------------L 377 (517)
....++.||..+|.-. .. .-.+.|||+|||.... +
T Consensus 624 -~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f 702 (821)
T CHL00095 624 -HPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFF 702 (821)
T ss_pred -CHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhc
Confidence 2346777888887321 10 1135789999984311 2
Q ss_pred ChhhhccCCceeeEeccCCCHHHHHHHHHHhcC
Q 010133 378 DPALLRSGRMDMHIFMSYCSYPALLILLKNYLG 410 (517)
Q Consensus 378 D~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~ 410 (517)
.|.|+. |+|..|.|.+.+.++...|+...+.
T Consensus 703 ~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~ 733 (821)
T CHL00095 703 RPEFLN--RLDEIIVFRQLTKNDVWEIAEIMLK 733 (821)
T ss_pred CHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 356676 9999999999999999999887763
No 158
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.22 E-value=4.9e-10 Score=115.41 Aligned_cols=152 Identities=21% Similarity=0.319 Sum_probs=99.6
Q ss_pred CcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh-------CCceE-------
Q 010133 201 TFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL-------GYDIY------- 266 (517)
Q Consensus 201 ~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l-------~~~i~------- 266 (517)
+|..|+|.++.|..++-.+... ...++||.||||||||+|++++++.+ +.++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 5889999999988875433321 12379999999999999999999877 22111
Q ss_pred --E----------------------Eeecc------ccChHHHHHHHHh-----------ccCCcEEEEccchhhhcccc
Q 010133 267 --D----------------------LELTE------VHNNSELRKLLMK-----------TSSKSIIVIEDIDCSISLSN 305 (517)
Q Consensus 267 --~----------------------l~l~~------~~~~~~L~~lf~~-----------~~~~sII~iDdID~~~~~~~ 305 (517)
. +++.. +...-.+...+.. ...+.+||||||+.+
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L----- 143 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLL----- 143 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhC-----
Confidence 0 11111 1111123332211 124589999999986
Q ss_pred ccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhc---------CCcccCCCceEEEEEeCCCC-
Q 010133 306 RNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTD---------GLWSCCGSEKIFVFTTNHIE- 375 (517)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lD---------g~~s~~~~~~iiI~TTN~~e- 375 (517)
...+++.||+.|+ |.........++|+|+|..+
T Consensus 144 -------------------------------------~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg 186 (337)
T TIGR02030 144 -------------------------------------EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEG 186 (337)
T ss_pred -------------------------------------CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccC
Confidence 2345667777774 22222223356677777555
Q ss_pred CCChhhhccCCceeeEeccCCCH-HHHHHHHHHhc
Q 010133 376 KLDPALLRSGRMDMHIFMSYCSY-PALLILLKNYL 409 (517)
Q Consensus 376 ~LD~ALlRpGR~d~~I~~~~p~~-e~~~~l~~~~l 409 (517)
.|.++|+. ||.++|.+++|.. +++..|++...
T Consensus 187 ~l~~~Lld--Rf~l~i~l~~p~~~eer~eIL~~~~ 219 (337)
T TIGR02030 187 ELRPQLLD--RFGLHAEIRTVRDVELRVEIVERRT 219 (337)
T ss_pred CCCHHHHh--hcceEEECCCCCCHHHHHHHHHhhh
Confidence 68999999 9999999999975 88888887744
No 159
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.21 E-value=4.5e-11 Score=117.73 Aligned_cols=98 Identities=19% Similarity=0.465 Sum_probs=72.7
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeecc
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTE 272 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~ 272 (517)
..++.+|++....++..+.++..+..|.... .. + ..+++|+||||||||+|+.|||+++ +..++.+++.+
T Consensus 65 ~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~---~~-~---~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~ 137 (244)
T PRK07952 65 LHQNCSFENYRVECEGQMNALSKARQYVEEF---DG-N---IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVAD 137 (244)
T ss_pred cccCCccccccCCCchHHHHHHHHHHHHHhh---cc-C---CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHH
Confidence 3456789999877666666778788887542 11 1 2489999999999999999999998 77888887766
Q ss_pred ccC---------hHHHHHHHHhccCCcEEEEccchhh
Q 010133 273 VHN---------NSELRKLLMKTSSKSIIVIEDIDCS 300 (517)
Q Consensus 273 ~~~---------~~~L~~lf~~~~~~sII~iDdID~~ 300 (517)
+.. +.....++.......+|+||||++.
T Consensus 138 l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~ 174 (244)
T PRK07952 138 IMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQ 174 (244)
T ss_pred HHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCC
Confidence 531 1123455666667899999999974
No 160
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.19 E-value=5.2e-11 Score=111.32 Aligned_cols=107 Identities=26% Similarity=0.423 Sum_probs=75.8
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCC----ceEEEeeccccC----hHHHHHHHHhcc------CCcEEEEccchhhhcc
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGY----DIYDLELTEVHN----NSELRKLLMKTS------SKSIIVIEDIDCSISL 303 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~----~i~~l~l~~~~~----~~~L~~lf~~~~------~~sII~iDdID~~~~~ 303 (517)
-.+||.||+|||||.||+++|..+.. +++.+|++.+.. ...+..++...+ ...||||||||.+...
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~~ 83 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHPS 83 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhcccc
Confidence 46899999999999999999999996 999999999977 455666665443 3469999999987310
Q ss_pred ccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCccc--C-----CCceEEEEEeCCCC
Q 010133 304 SNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSC--C-----GSEKIFVFTTNHIE 375 (517)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~--~-----~~~~iiI~TTN~~e 375 (517)
...+.+-.....++.||..||+-.-. . -.+.|+|||+|--.
T Consensus 84 -------------------------------~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 84 -------------------------------NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp -------------------------------TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred -------------------------------ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 01111223446778888888753211 1 13478999998653
No 161
>PRK08116 hypothetical protein; Validated
Probab=99.17 E-value=2e-10 Score=115.13 Aligned_cols=95 Identities=20% Similarity=0.408 Sum_probs=63.1
Q ss_pred CCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccccCh
Q 010133 200 STFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVHNN 276 (517)
Q Consensus 200 ~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~~~ 276 (517)
.+|++....+.. ...+..+..|+++- .... ...+|++||||||||||+|+.|||+++ +.+++.++...+...
T Consensus 82 ~tFdnf~~~~~~-~~a~~~a~~y~~~~---~~~~-~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~ 156 (268)
T PRK08116 82 STFENFLFDKGS-EKAYKIARKYVKKF---EEMK-KENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR 156 (268)
T ss_pred cchhcccCChHH-HHHHHHHHHHHHHH---Hhhc-cCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 467777654443 34556666666542 1111 223589999999999999999999987 788888887664210
Q ss_pred ----------HHHHHHHHhccCCcEEEEccchh
Q 010133 277 ----------SELRKLLMKTSSKSIIVIEDIDC 299 (517)
Q Consensus 277 ----------~~L~~lf~~~~~~sII~iDdID~ 299 (517)
.....++.......+|+|||+..
T Consensus 157 i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~ 189 (268)
T PRK08116 157 IKSTYKSSGKEDENEIIRSLVNADLLILDDLGA 189 (268)
T ss_pred HHHHHhccccccHHHHHHHhcCCCEEEEecccC
Confidence 11223444455667999999964
No 162
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.16 E-value=1.4e-09 Score=111.76 Aligned_cols=66 Identities=26% Similarity=0.295 Sum_probs=52.1
Q ss_pred CCCCcc-cccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC-------ceEEEe
Q 010133 198 HPSTFD-TLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY-------DIYDLE 269 (517)
Q Consensus 198 ~p~~f~-tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~-------~i~~l~ 269 (517)
+-.-|+ +++|.++.++++++.+.....+ . ...++.++|+|||||||||||++||+.++. ++|.+.
T Consensus 45 ~y~~F~~~~~G~~~~i~~lv~~l~~~a~g------~-~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~ 117 (361)
T smart00763 45 RYRFFDHDFFGMEEAIERFVNYFKSAAQG------L-EERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFK 117 (361)
T ss_pred eccccchhccCcHHHHHHHHHHHHHHHhc------C-CCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEE
Confidence 444577 8999999988887766555531 1 234578999999999999999999999976 999997
Q ss_pred e
Q 010133 270 L 270 (517)
Q Consensus 270 l 270 (517)
.
T Consensus 118 ~ 118 (361)
T smart00763 118 W 118 (361)
T ss_pred e
Confidence 7
No 163
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=2.5e-09 Score=111.51 Aligned_cols=194 Identities=20% Similarity=0.304 Sum_probs=128.4
Q ss_pred ccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCc-----eEEEeeccccChHH-
Q 010133 205 LAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYD-----IYDLELTEVHNNSE- 278 (517)
Q Consensus 205 v~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~-----i~~l~l~~~~~~~~- 278 (517)
+...+++.+.+...+..++++. . |.++++|||||||||..++.++.++.-. ++.+||....+...
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~-------~--p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGE-------R--PSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCC-------C--CccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 6677888888887777777652 2 3359999999999999999999998544 88999988755432
Q ss_pred HHHHHH------------------------hccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCC
Q 010133 279 LRKLLM------------------------KTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSG 334 (517)
Q Consensus 279 L~~lf~------------------------~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (517)
+.+++. ......||+|||+|.+++
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~-------------------------------- 137 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVD-------------------------------- 137 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcc--------------------------------
Confidence 222222 223467999999999852
Q ss_pred CCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCC---CCCChhhhccCCce-eeEeccCCCHHHHHHHHHHhcC
Q 010133 335 SVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHI---EKLDPALLRSGRMD-MHIFMSYCSYPALLILLKNYLG 410 (517)
Q Consensus 335 ~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~---e~LD~ALlRpGR~d-~~I~~~~p~~e~~~~l~~~~l~ 410 (517)
. ....|-.|+...+-. ...+++|+.+|.. +.|||.+.. ++. .+|.|++.+.+|+..|++....
T Consensus 138 ------~-~~~~LY~L~r~~~~~----~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~ 204 (366)
T COG1474 138 ------K-DGEVLYSLLRAPGEN----KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVE 204 (366)
T ss_pred ------c-cchHHHHHHhhcccc----ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHH
Confidence 0 014666666665544 2346788888865 567888876 332 4589999999999999987653
Q ss_pred --CCCCCCChHhHHHHHHhhCCCCCCHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh
Q 010133 411 --YEESDLEDETLKELEDVVGKAEMTPADISEVLIKNKRDKCKAVRELLETLKVKAEK 466 (517)
Q Consensus 411 --~~~~~~~~~~~~~i~~l~~~~~~spadi~~~l~~~~~~~~~al~~l~~~l~~~~~~ 466 (517)
.....+++..++.++... .....|+..|++-+..+.+.+...
T Consensus 205 ~~~~~~~~~~~vl~lia~~~--------------a~~~GDAR~aidilr~A~eiAe~~ 248 (366)
T COG1474 205 EGFSAGVIDDDVLKLIAALV--------------AAESGDARKAIDILRRAGEIAERE 248 (366)
T ss_pred hhccCCCcCccHHHHHHHHH--------------HHcCccHHHHHHHHHHHHHHHHhh
Confidence 222233344444443331 122247777887666666555433
No 164
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.16 E-value=3.5e-10 Score=123.09 Aligned_cols=249 Identities=14% Similarity=0.129 Sum_probs=143.5
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHH---hCCceEEEeecccc
Q 010133 198 HPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANY---LGYDIYDLELTEVH 274 (517)
Q Consensus 198 ~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~---l~~~i~~l~l~~~~ 274 (517)
...+|++++|.....+.+.+.+..+.... .++||+|+|||||+++|++|-+. .+.||+.+||..+.
T Consensus 207 ~~~~f~~iiG~S~~m~~~~~~i~~~A~~~-----------~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~ 275 (526)
T TIGR02329 207 TRYRLDDLLGASAPMEQVRALVRLYARSD-----------ATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIA 275 (526)
T ss_pred cccchhheeeCCHHHHHHHHHHHHHhCCC-----------CcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCC
Confidence 34679999999999999999888887663 47999999999999999999765 46799999999884
Q ss_pred ChHHHH-HHHH------------------hccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCC
Q 010133 275 NNSELR-KLLM------------------KTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGS 335 (517)
Q Consensus 275 ~~~~L~-~lf~------------------~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (517)
. ..+. .+|. +......|||||||.+
T Consensus 276 e-~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~L----------------------------------- 319 (526)
T TIGR02329 276 E-SLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEM----------------------------------- 319 (526)
T ss_pred h-hHHHHHhcCCcccccccccccccccchhhcCCceEEecChHhC-----------------------------------
Confidence 3 3333 3332 1124579999999987
Q ss_pred CCCCCCchhhHHHHHHHhhcCCc-ccCCC------ceEEEEEeCCC-C------CCChhhhccCCce-eeEeccCC--CH
Q 010133 336 VGGEDGNNSITLSGLLNFTDGLW-SCCGS------EKIFVFTTNHI-E------KLDPALLRSGRMD-MHIFMSYC--SY 398 (517)
Q Consensus 336 ~~~~~~~~~~~ls~LLn~lDg~~-s~~~~------~~iiI~TTN~~-e------~LD~ALlRpGR~d-~~I~~~~p--~~ 398 (517)
.......||..++.-. ..-|+ +.-+|+|||.. + .+.+.|.. |+. ..|.+|+. ..
T Consensus 320 -------p~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~~~~I~lPPLReR~ 390 (526)
T TIGR02329 320 -------PLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLSILRIALPPLRERP 390 (526)
T ss_pred -------CHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHH--hcCCcEEeCCCchhch
Confidence 2234455666664211 11010 12456666543 1 23345554 554 56777776 35
Q ss_pred HHHHHHHHHhcCCCC----CCCChHhHHH-------HHHhhCCCCCCHHHHHHHHHH----hc--ccHHHHHHHHHHHHH
Q 010133 399 PALLILLKNYLGYEE----SDLEDETLKE-------LEDVVGKAEMTPADISEVLIK----NK--RDKCKAVRELLETLK 461 (517)
Q Consensus 399 e~~~~l~~~~l~~~~----~~~~~~~~~~-------i~~l~~~~~~spadi~~~l~~----~~--~~~~~al~~l~~~l~ 461 (517)
+++..|+..|+.... ..++.+.+.. +...-|..++ .++.+++.+ .. .++....+.+...+.
T Consensus 391 eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~y~WPGNv--rEL~nvier~~i~~~~~~~~~I~~~~l~~~~~ 468 (526)
T TIGR02329 391 GDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQRYPWPGNV--RELRNLVERLALELSAMPAGALTPDVLRALAP 468 (526)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHhCCCCchH--HHHHHHHHHHHHhcccCCCCccCHHHhhhhch
Confidence 778888888774321 1233444433 4444444444 444444332 11 112222222211111
Q ss_pred HHHHhhhhcCCccccCCChhHHHHHHHhhcCCCCccchhhhhccC
Q 010133 462 VKAEKNVKHGGIIVKNSDYEEEEQEKRALESPIEGSDIEDANNCE 506 (517)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~~~~~~~~~~~ 506 (517)
....... ...... .......+.|++.+...|+..+.|++++|+
T Consensus 469 ~~~~~~~-~~~~~~-~~l~~~~~~Er~~I~~aL~~~~Gn~~~aA~ 511 (526)
T TIGR02329 469 ELAEASG-KGKTSA-LSLRERSRVEALAVRAALERFGGDRDAAAK 511 (526)
T ss_pred hhccccc-ccccCc-cchHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 1000000 000000 001113577889999999999999988764
No 165
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.15 E-value=2.5e-09 Score=110.19 Aligned_cols=177 Identities=14% Similarity=0.169 Sum_probs=116.0
Q ss_pred CcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccccChH
Q 010133 201 TFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVHNNS 277 (517)
Q Consensus 201 ~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~~~~ 277 (517)
.|++++|.+...+.+++.+....... .++||+|+|||||+++|++|-... +.+++.+||..+. +.
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~~-----------~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~-~~ 71 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPLD-----------KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALN-EN 71 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCCC-----------CCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCC-HH
Confidence 36788999999999999888887653 479999999999999999996554 5799999999874 33
Q ss_pred HHHH-HHH-----------------hccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCC
Q 010133 278 ELRK-LLM-----------------KTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGE 339 (517)
Q Consensus 278 ~L~~-lf~-----------------~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (517)
.+.. +|. ......+|||||||.+
T Consensus 72 ~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L--------------------------------------- 112 (326)
T PRK11608 72 LLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATA--------------------------------------- 112 (326)
T ss_pred HHHHHHccccccccCCcccccCCchhccCCCeEEeCChhhC---------------------------------------
Confidence 3333 322 1234688999999987
Q ss_pred CCchhhHHHHHHHhhcCC-cccCC------CceEEEEEeCCC-------CCCChhhhccCCc-eeeEeccCCC--HHHHH
Q 010133 340 DGNNSITLSGLLNFTDGL-WSCCG------SEKIFVFTTNHI-------EKLDPALLRSGRM-DMHIFMSYCS--YPALL 402 (517)
Q Consensus 340 ~~~~~~~ls~LLn~lDg~-~s~~~------~~~iiI~TTN~~-------e~LD~ALlRpGR~-d~~I~~~~p~--~e~~~ 402 (517)
.......|++.++.- ....| ....||+||+.. ..+.+.|.. || ...|.+|+.. .+++.
T Consensus 113 ---~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~ 187 (326)
T PRK11608 113 ---PMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIM 187 (326)
T ss_pred ---CHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHH
Confidence 123445566666432 11111 124566666542 356677887 88 4577888763 56777
Q ss_pred HHHHHhcCCCC--------CCCChHhHHHHHHhhCCCCC
Q 010133 403 ILLKNYLGYEE--------SDLEDETLKELEDVVGKAEM 433 (517)
Q Consensus 403 ~l~~~~l~~~~--------~~~~~~~~~~i~~l~~~~~~ 433 (517)
.|+..|+.... ..++.+.+..+...-|..++
T Consensus 188 ~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNv 226 (326)
T PRK11608 188 LMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNI 226 (326)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHH
Confidence 78877752210 13445555555555544444
No 166
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.14 E-value=8e-10 Score=121.98 Aligned_cols=208 Identities=21% Similarity=0.266 Sum_probs=124.3
Q ss_pred CCCceecccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEE
Q 010133 188 GHPWESVSFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYD 267 (517)
Q Consensus 188 ~~~w~~~~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~ 267 (517)
..+| +....|.++++|++.++..+++...+.... .+....+.++|+||||||||++++++|+.++.+++.
T Consensus 71 ~~pW--~eKyrP~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~E 140 (637)
T TIGR00602 71 NEPW--VEKYKPETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQE 140 (637)
T ss_pred cCch--HHHhCCCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHH
Confidence 4578 567899999999999988766544433221 222334469999999999999999999999876543
Q ss_pred -Ee---eccc------------------cChHHHHHHHHhc------------cCCcEEEEccchhhhccccccccCCCC
Q 010133 268 -LE---LTEV------------------HNNSELRKLLMKT------------SSKSIIVIEDIDCSISLSNRNKRSNGS 313 (517)
Q Consensus 268 -l~---l~~~------------------~~~~~L~~lf~~~------------~~~sII~iDdID~~~~~~~~~~~~~~~ 313 (517)
++ +... .....+..++..+ ..+.||||||||.++.
T Consensus 141 w~npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~----------- 209 (637)
T TIGR00602 141 WSNPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFY----------- 209 (637)
T ss_pred HhhhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhch-----------
Confidence 11 1100 1122334444322 2467999999998741
Q ss_pred CCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHH-hhcCCcccCCCceEEEEEeCCCC--------------CCC
Q 010133 314 GSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLN-FTDGLWSCCGSEKIFVFTTNHIE--------------KLD 378 (517)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn-~lDg~~s~~~~~~iiI~TTN~~e--------------~LD 378 (517)
. ....+..+|. .... .+.-.+|+.+|..+. .|.
T Consensus 210 ---------------------------r-~~~~lq~lLr~~~~e----~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~ 257 (637)
T TIGR00602 210 ---------------------------R-DTRALHEILRWKYVS----IGRCPLVFIITESLEGDNNQRRLLFPAETIMN 257 (637)
T ss_pred ---------------------------h-hHHHHHHHHHHHhhc----CCCceEEEEecCCccccccccccccchhcccC
Confidence 0 1113445554 2111 111123333332221 134
Q ss_pred hhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhhCCCCC-CHHHHHHHHHHhcccHHHHHHHHH
Q 010133 379 PALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDVVGKAEM-TPADISEVLIKNKRDKCKAVRELL 457 (517)
Q Consensus 379 ~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~~~~~~-spadi~~~l~~~~~~~~~al~~l~ 457 (517)
++|+..-|+ .+|.|.+....+.+..++..+..+... ......+ ++..|..++.....|...||..|.
T Consensus 258 ~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~-----------~~~~~~~p~~~~l~~I~~~s~GDiRsAIn~LQ 325 (637)
T TIGR00602 258 KEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKK-----------NGEKIKVPKKTSVELLCQGCSGDIRSAINSLQ 325 (637)
T ss_pred HhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhc-----------cccccccCCHHHHHHHHHhCCChHHHHHHHHH
Confidence 788843355 489999999999888888776543210 0001112 356677777777789999998776
Q ss_pred HHH
Q 010133 458 ETL 460 (517)
Q Consensus 458 ~~l 460 (517)
-+.
T Consensus 326 f~~ 328 (637)
T TIGR00602 326 FSS 328 (637)
T ss_pred HHH
Confidence 543
No 167
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.14 E-value=6.7e-11 Score=103.91 Aligned_cols=105 Identities=26% Similarity=0.319 Sum_probs=63.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccChHHHHHH--HHh-------cc---CCcEEEEccchhhhccccc
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNNSELRKL--LMK-------TS---SKSIIVIEDIDCSISLSNR 306 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~~~~L~~l--f~~-------~~---~~sII~iDdID~~~~~~~~ 306 (517)
.+||.|+||+|||++|+++|..++.++-.|.++.-...+++... +.. .+ -..|+++|||.+.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNra------ 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRA------ 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS------
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccC------
Confidence 38999999999999999999999999999988754344444322 111 11 2379999999985
Q ss_pred cccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhc-------CCcccCCCceEEEEEeCCCC----
Q 010133 307 NKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTD-------GLWSCCGSEKIFVFTTNHIE---- 375 (517)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lD-------g~~s~~~~~~iiI~TTN~~e---- 375 (517)
...+.|.||..|. |..-......+||+|-|..+
T Consensus 75 ------------------------------------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gt 118 (131)
T PF07726_consen 75 ------------------------------------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGT 118 (131)
T ss_dssp -------------------------------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S--
T ss_pred ------------------------------------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCce
Confidence 4568899999884 32223344568888889877
Q ss_pred -CCChhhhccCCc
Q 010133 376 -KLDPALLRSGRM 387 (517)
Q Consensus 376 -~LD~ALlRpGR~ 387 (517)
.|++|++. ||
T Consensus 119 y~Lpea~~D--RF 129 (131)
T PF07726_consen 119 YPLPEAQLD--RF 129 (131)
T ss_dssp ----HHHHT--TS
T ss_pred ecCCHHHhc--cc
Confidence 68899998 87
No 168
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.13 E-value=2.6e-09 Score=110.21 Aligned_cols=173 Identities=15% Similarity=0.178 Sum_probs=111.0
Q ss_pred ccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccccChHHHH-
Q 010133 205 LAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVHNNSELR- 280 (517)
Q Consensus 205 v~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~~~~~L~- 280 (517)
++|.....+.+++.+....... .++||+|+|||||+++|++|-... +.+|+.+||..+. +..+.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~-----------~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~-~~~l~~ 68 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLD-----------RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALS-ENLLDS 68 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCC-----------CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCC-hHHHHH
Confidence 3566777788888787776542 479999999999999999996554 5799999999874 33333
Q ss_pred HHHH-----------------hccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCch
Q 010133 281 KLLM-----------------KTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNN 343 (517)
Q Consensus 281 ~lf~-----------------~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (517)
.+|. ......+|||||||.+ .
T Consensus 69 ~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L------------------------------------------~ 106 (329)
T TIGR02974 69 ELFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATA------------------------------------------S 106 (329)
T ss_pred HHhccccccccCcccccCCchhhCCCCEEEeCChHhC------------------------------------------C
Confidence 3332 1225689999999987 1
Q ss_pred hhHHHHHHHhhcCCc-ccC------CCceEEEEEeCCC-------CCCChhhhccCCce-eeEeccCCC--HHHHHHHHH
Q 010133 344 SITLSGLLNFTDGLW-SCC------GSEKIFVFTTNHI-------EKLDPALLRSGRMD-MHIFMSYCS--YPALLILLK 406 (517)
Q Consensus 344 ~~~ls~LLn~lDg~~-s~~------~~~~iiI~TTN~~-------e~LD~ALlRpGR~d-~~I~~~~p~--~e~~~~l~~ 406 (517)
......|+..++.-. ... ..+..||+|||.. ..+.+.|.. |+. ..|.+|+.. .+++..|+.
T Consensus 107 ~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~~~~i~lPpLReR~eDI~~L~~ 184 (329)
T TIGR02974 107 LLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RLAFDVITLPPLRERQEDIMLLAE 184 (329)
T ss_pred HHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--HhcchhcCCCchhhhhhhHHHHHH
Confidence 234455666664211 110 1224566676642 245677777 774 467777774 677878887
Q ss_pred HhcCC-------CC-CCCChHhHHHHHHhhCCCCC
Q 010133 407 NYLGY-------EE-SDLEDETLKELEDVVGKAEM 433 (517)
Q Consensus 407 ~~l~~-------~~-~~~~~~~~~~i~~l~~~~~~ 433 (517)
.|+.. .. ..++.+.+..+...-|..++
T Consensus 185 ~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNv 219 (329)
T TIGR02974 185 HFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNV 219 (329)
T ss_pred HHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchH
Confidence 77632 11 23556666666665554444
No 169
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.12 E-value=2.8e-09 Score=113.24 Aligned_cols=153 Identities=17% Similarity=0.239 Sum_probs=95.1
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCC--ceEEEeeccccChHHH------HHH-----HHh-----ccCCcEEEEccchh
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGY--DIYDLELTEVHNNSEL------RKL-----LMK-----TSSKSIIVIEDIDC 299 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~--~i~~l~l~~~~~~~~L------~~l-----f~~-----~~~~sII~iDdID~ 299 (517)
..+||+||||||||++|++||..++. +|..+.+... +..+| ..+ |.. .+...|||+|||..
T Consensus 40 ~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~ft-tp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~r 118 (498)
T PRK13531 40 ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFS-TPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWK 118 (498)
T ss_pred CCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeec-CcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeeccccc
Confidence 47999999999999999999998753 4444444311 11221 111 111 11234999999986
Q ss_pred hhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhh-cCCcccC-----CCceEEEEEeCC
Q 010133 300 SISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFT-DGLWSCC-----GSEKIFVFTTNH 373 (517)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~l-Dg~~s~~-----~~~~iiI~TTN~ 373 (517)
+ ...+++.||..| ++..... -..+++++|||.
T Consensus 119 a------------------------------------------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~ 156 (498)
T PRK13531 119 A------------------------------------------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNE 156 (498)
T ss_pred C------------------------------------------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCC
Confidence 5 456788899988 3332221 123678888884
Q ss_pred CC---CCChhhhccCCceeeEeccCCC-HHHHHHHHHHhcCC--C----CCCCChHhHHHHHHhhCCCCCCH
Q 010133 374 IE---KLDPALLRSGRMDMHIFMSYCS-YPALLILLKNYLGY--E----ESDLEDETLKELEDVVGKAEMTP 435 (517)
Q Consensus 374 ~e---~LD~ALlRpGR~d~~I~~~~p~-~e~~~~l~~~~l~~--~----~~~~~~~~~~~i~~l~~~~~~sp 435 (517)
.. ...+|+.- ||-..|.++||+ .+.+..|+...... . ...++.+.+..+.+.+....+++
T Consensus 157 LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d 226 (498)
T PRK13531 157 LPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPD 226 (498)
T ss_pred CcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCH
Confidence 32 23359999 999999999997 57777787653221 0 11234455556666655555554
No 170
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.12 E-value=4.1e-09 Score=108.48 Aligned_cols=123 Identities=22% Similarity=0.325 Sum_probs=92.8
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHhCC------------------------ceEEEeecc---ccChHHHHHHHHhc---
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYLGY------------------------DIYDLELTE---VHNNSELRKLLMKT--- 286 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l~~------------------------~i~~l~l~~---~~~~~~L~~lf~~~--- 286 (517)
+.+|||+||+|+||+++|.++|..+.. +++.+.... ...-+.++.+....
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~ 101 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQT 101 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhc
Confidence 458999999999999999999999854 344443321 11345666665433
Q ss_pred c---CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCC
Q 010133 287 S---SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGS 363 (517)
Q Consensus 287 ~---~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~ 363 (517)
+ ..-|++||++|.+ .....+.||..|+.- .+
T Consensus 102 ~~~~~~kv~iI~~a~~m------------------------------------------~~~aaNaLLK~LEEP----p~ 135 (328)
T PRK05707 102 AQLGGRKVVLIEPAEAM------------------------------------------NRNAANALLKSLEEP----SG 135 (328)
T ss_pred cccCCCeEEEECChhhC------------------------------------------CHHHHHHHHHHHhCC----CC
Confidence 2 4568899999986 345678899988874 34
Q ss_pred ceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHh
Q 010133 364 EKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNY 408 (517)
Q Consensus 364 ~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~ 408 (517)
+.++|++|+.++.|.|+++. |+ ..+.|++|+.++....+...
T Consensus 136 ~~~fiL~t~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 136 DTVLLLISHQPSRLLPTIKS--RC-QQQACPLPSNEESLQWLQQA 177 (328)
T ss_pred CeEEEEEECChhhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHh
Confidence 57889999999999999998 88 45999999998887776654
No 171
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.11 E-value=1.6e-09 Score=120.99 Aligned_cols=152 Identities=18% Similarity=0.274 Sum_probs=100.9
Q ss_pred CcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh-------------------
Q 010133 201 TFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL------------------- 261 (517)
Q Consensus 201 ~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l------------------- 261 (517)
+|..|+|.+..|..++-.+. .. .-.|+||+||||||||++|++|++.+
T Consensus 2 pf~~ivGq~~~~~al~~~av---~~----------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAV---DP----------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhh---CC----------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 58889998888766533221 11 01379999999999999999999988
Q ss_pred ----------------CCceEEEeecccc----ChHHHHHHHHh-----------ccCCcEEEEccchhhhccccccccC
Q 010133 262 ----------------GYDIYDLELTEVH----NNSELRKLLMK-----------TSSKSIIVIEDIDCSISLSNRNKRS 310 (517)
Q Consensus 262 ----------------~~~i~~l~l~~~~----~~~~L~~lf~~-----------~~~~sII~iDdID~~~~~~~~~~~~ 310 (517)
..+|+.+.++... ...++...+.. .....|||||||+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l---------- 138 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLL---------- 138 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhC----------
Confidence 3466666554321 11223332321 124579999999987
Q ss_pred CCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhc-CC--------cccCCCceEEEEEeCCC-CCCChh
Q 010133 311 NGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTD-GL--------WSCCGSEKIFVFTTNHI-EKLDPA 380 (517)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lD-g~--------~s~~~~~~iiI~TTN~~-e~LD~A 380 (517)
...+++.||+.|+ |. ........++|+|+|.. ..|.++
T Consensus 139 --------------------------------~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~ 186 (633)
T TIGR02442 139 --------------------------------DDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQ 186 (633)
T ss_pred --------------------------------CHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHH
Confidence 2346777888775 31 11111236788888854 368899
Q ss_pred hhccCCceeeEeccCCC-HHHHHHHHHHhc
Q 010133 381 LLRSGRMDMHIFMSYCS-YPALLILLKNYL 409 (517)
Q Consensus 381 LlRpGR~d~~I~~~~p~-~e~~~~l~~~~l 409 (517)
|+. ||+.+|.++++. .+++..+++..+
T Consensus 187 L~d--R~~l~i~v~~~~~~~~~~~il~~~~ 214 (633)
T TIGR02442 187 LLD--RFGLCVDVAAPRDPEERVEIIRRRL 214 (633)
T ss_pred HHh--hcceEEEccCCCchHHHHHHHHHHH
Confidence 999 999999999885 566777776543
No 172
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.11 E-value=9.4e-10 Score=115.96 Aligned_cols=27 Identities=37% Similarity=0.616 Sum_probs=24.2
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHhCC
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYLGY 263 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l~~ 263 (517)
+++++|+||||||||++|+++|..+..
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 358999999999999999999998853
No 173
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.11 E-value=3e-09 Score=116.91 Aligned_cols=179 Identities=15% Similarity=0.185 Sum_probs=117.3
Q ss_pred CCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccccC
Q 010133 199 PSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVHN 275 (517)
Q Consensus 199 p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~~ 275 (517)
..+|+.++|.+...+++++.+....... .++||+|++||||+++|++|.... +.+++.+||..+..
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a~~~-----------~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVARSN-----------STVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHhCcC-----------CCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 3578999999999999999888887542 479999999999999999998775 67999999998833
Q ss_pred hHHHHH-HHHh-----------------ccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCC
Q 010133 276 NSELRK-LLMK-----------------TSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVG 337 (517)
Q Consensus 276 ~~~L~~-lf~~-----------------~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (517)
..+.. +|.. .....+|||||||.+
T Consensus 261 -~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L------------------------------------- 302 (534)
T TIGR01817 261 -TLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEI------------------------------------- 302 (534)
T ss_pred -HHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhC-------------------------------------
Confidence 33333 3321 124679999999987
Q ss_pred CCCCchhhHHHHHHHhhcCC-cccCCC------ceEEEEEeCCC-------CCCChhhhccCCce-eeEeccCCC--HHH
Q 010133 338 GEDGNNSITLSGLLNFTDGL-WSCCGS------EKIFVFTTNHI-------EKLDPALLRSGRMD-MHIFMSYCS--YPA 400 (517)
Q Consensus 338 ~~~~~~~~~ls~LLn~lDg~-~s~~~~------~~iiI~TTN~~-------e~LD~ALlRpGR~d-~~I~~~~p~--~e~ 400 (517)
.......|++.++.- ....|+ ..-+|+|||.. ..+.+.|.. |+. ..|.+|+.. .++
T Consensus 303 -----~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eD 375 (534)
T TIGR01817 303 -----SPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERRED 375 (534)
T ss_pred -----CHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCccccccc
Confidence 123455666666432 111111 24566666542 233445554 554 467777764 677
Q ss_pred HHHHHHHhcCCCC------CCCChHhHHHHHHhhCCCCC
Q 010133 401 LLILLKNYLGYEE------SDLEDETLKELEDVVGKAEM 433 (517)
Q Consensus 401 ~~~l~~~~l~~~~------~~~~~~~~~~i~~l~~~~~~ 433 (517)
+..|+..|+.... ..++.+.+..+...-|..++
T Consensus 376 i~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNv 414 (534)
T TIGR01817 376 IPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNV 414 (534)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChH
Confidence 7778877763211 24555666666665554444
No 174
>PRK12377 putative replication protein; Provisional
Probab=99.06 E-value=9.4e-10 Score=108.68 Aligned_cols=95 Identities=20% Similarity=0.384 Sum_probs=66.3
Q ss_pred CCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccccC
Q 010133 199 PSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVHN 275 (517)
Q Consensus 199 p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~~ 275 (517)
..+|++.....+..+.++..+..|...- .. ...+++|+||||||||+|+.|||+++ +..++.++..++..
T Consensus 70 ~~tFdnf~~~~~~~~~a~~~a~~~a~~~---~~----~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~ 142 (248)
T PRK12377 70 KCSFANYQVQNDGQRYALSQAKSIADEL---MT----GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMS 142 (248)
T ss_pred cCCcCCcccCChhHHHHHHHHHHHHHHH---Hh----cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHH
Confidence 3468887665555455666666665542 11 13589999999999999999999998 67777777766522
Q ss_pred --------hHHHHHHHHhccCCcEEEEccchhh
Q 010133 276 --------NSELRKLLMKTSSKSIIVIEDIDCS 300 (517)
Q Consensus 276 --------~~~L~~lf~~~~~~sII~iDdID~~ 300 (517)
......++.......+|+||||...
T Consensus 143 ~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~ 175 (248)
T PRK12377 143 RLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQ 175 (248)
T ss_pred HHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 1123355666678899999999863
No 175
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.06 E-value=7.4e-10 Score=97.16 Aligned_cols=64 Identities=23% Similarity=0.479 Sum_probs=48.1
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCc---eEEEeeccccC--------------------hHHHHHHHHhcc--CCcEE
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYD---IYDLELTEVHN--------------------NSELRKLLMKTS--SKSII 292 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~---i~~l~l~~~~~--------------------~~~L~~lf~~~~--~~sII 292 (517)
+.++|+||||||||++++++|..+... ++.+++..... ......++..+. .+.||
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 579999999999999999999999775 78887775421 223344444333 35999
Q ss_pred EEccchhhh
Q 010133 293 VIEDIDCSI 301 (517)
Q Consensus 293 ~iDdID~~~ 301 (517)
+|||++.+.
T Consensus 83 iiDei~~~~ 91 (148)
T smart00382 83 ILDEITSLL 91 (148)
T ss_pred EEECCcccC
Confidence 999999873
No 176
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=1.2e-08 Score=104.53 Aligned_cols=147 Identities=21% Similarity=0.225 Sum_probs=103.3
Q ss_pred CcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCc----------------
Q 010133 201 TFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYD---------------- 264 (517)
Q Consensus 201 ~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~---------------- 264 (517)
.|++|+|.+..++.+...+..- ..+..||||||+|+||+++|.++|+.+...
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 4889999999877765544321 123489999999999999999999987322
Q ss_pred --eEEEeeccc-----------------------cChHHHHHHHHh---cc---CCcEEEEccchhhhccccccccCCCC
Q 010133 265 --IYDLELTEV-----------------------HNNSELRKLLMK---TS---SKSIIVIEDIDCSISLSNRNKRSNGS 313 (517)
Q Consensus 265 --i~~l~l~~~-----------------------~~~~~L~~lf~~---~~---~~sII~iDdID~~~~~~~~~~~~~~~ 313 (517)
++.+..... -.-+.++.+... .+ ..-|++||++|.+
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m------------- 136 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM------------- 136 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-------------
Confidence 122221100 001234444332 22 4579999999876
Q ss_pred CCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEec
Q 010133 314 GSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFM 393 (517)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~ 393 (517)
.....+.||..|+-. + ..++|++|+.++.|-|+++. |. ..|.|
T Consensus 137 -----------------------------~~~aaNaLLK~LEEP----p-~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f 179 (314)
T PRK07399 137 -----------------------------NEAAANALLKTLEEP----G-NGTLILIAPSPESLLPTIVS--RC-QIIPF 179 (314)
T ss_pred -----------------------------CHHHHHHHHHHHhCC----C-CCeEEEEECChHhCcHHHHh--hc-eEEec
Confidence 234567888888775 2 34778888999999999998 87 78999
Q ss_pred cCCCHHHHHHHHHHhc
Q 010133 394 SYCSYPALLILLKNYL 409 (517)
Q Consensus 394 ~~p~~e~~~~l~~~~l 409 (517)
++++.++....+....
T Consensus 180 ~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 180 YRLSDEQLEQVLKRLG 195 (314)
T ss_pred CCCCHHHHHHHHHHhh
Confidence 9999999988887754
No 177
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.04 E-value=1.6e-09 Score=101.01 Aligned_cols=85 Identities=16% Similarity=0.170 Sum_probs=62.5
Q ss_pred ccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccccChHHHHH
Q 010133 205 LAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVHNNSELRK 281 (517)
Q Consensus 205 v~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~~~~~L~~ 281 (517)
++|.+...+++++.+..+...+ .++||+|++||||+.+|++|-+.. +.||+.+||+.+..+.--..
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~-----------~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSD-----------LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTST-----------S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCCC-----------CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhh
Confidence 4677778888888777777653 579999999999999999997755 57999999999844333345
Q ss_pred HHHhc-----------------cCCcEEEEccchhh
Q 010133 282 LLMKT-----------------SSKSIIVIEDIDCS 300 (517)
Q Consensus 282 lf~~~-----------------~~~sII~iDdID~~ 300 (517)
+|... ....+|||||||.+
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L 105 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDL 105 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS
T ss_pred hhccccccccccccccCCceeeccceEEeecchhhh
Confidence 55321 25689999999997
No 178
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.03 E-value=6e-09 Score=113.49 Aligned_cols=89 Identities=15% Similarity=0.185 Sum_probs=70.6
Q ss_pred CCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHH-----------hCCceEEE
Q 010133 200 STFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANY-----------LGYDIYDL 268 (517)
Q Consensus 200 ~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~-----------l~~~i~~l 268 (517)
.+|++++|.+...+.+.+.+..+.... .++||+|+|||||+++|++|-+. .+.||+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s~-----------~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARSS-----------AAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCC-----------CcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 469999999999999988888877663 47999999999999999999776 46799999
Q ss_pred eeccccChHHHH-HHHH------------------hccCCcEEEEccchhh
Q 010133 269 ELTEVHNNSELR-KLLM------------------KTSSKSIIVIEDIDCS 300 (517)
Q Consensus 269 ~l~~~~~~~~L~-~lf~------------------~~~~~sII~iDdID~~ 300 (517)
||..+.. ..+. .+|. +.....+||||||+.+
T Consensus 285 nCaal~e-~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~L 334 (538)
T PRK15424 285 NCGAIAE-SLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEM 334 (538)
T ss_pred ecccCCh-hhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhC
Confidence 9999843 3333 3332 1124579999999987
No 179
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.03 E-value=4.3e-09 Score=107.67 Aligned_cols=114 Identities=24% Similarity=0.338 Sum_probs=85.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC------------------------CceEEEeeccccC----hHHHHHHHHhc----
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG------------------------YDIYDLELTEVHN----NSELRKLLMKT---- 286 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~------------------------~~i~~l~l~~~~~----~~~L~~lf~~~---- 286 (517)
.+|||||||||||++|.++|+.+. -+++.++-+.... .+.++.+....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~ 105 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESP 105 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhccCC
Confidence 699999999999999999999997 5788888877654 33455554332
Q ss_pred --cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCc
Q 010133 287 --SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSE 364 (517)
Q Consensus 287 --~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~ 364 (517)
...-||+|||+|.+- ....+.|+..+.-- ...
T Consensus 106 ~~~~~kviiidead~mt------------------------------------------~~A~nallk~lEep----~~~ 139 (325)
T COG0470 106 LEGGYKVVIIDEADKLT------------------------------------------EDAANALLKTLEEP----PKN 139 (325)
T ss_pred CCCCceEEEeCcHHHHh------------------------------------------HHHHHHHHHHhccC----CCC
Confidence 245799999999872 23456677666554 345
Q ss_pred eEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHH
Q 010133 365 KIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPAL 401 (517)
Q Consensus 365 ~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~ 401 (517)
..+|++||.+..+-|.+.. |. ..+.|.+|+...+
T Consensus 140 ~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~ 173 (325)
T COG0470 140 TRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEA 173 (325)
T ss_pred eEEEEEcCChhhccchhhh--cc-eeeecCCchHHHH
Confidence 7899999999999998887 77 6788887655444
No 180
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.03 E-value=5.9e-09 Score=117.86 Aligned_cols=238 Identities=16% Similarity=0.186 Sum_probs=136.4
Q ss_pred CCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccccCh
Q 010133 200 STFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVHNN 276 (517)
Q Consensus 200 ~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~~~ 276 (517)
.+|++++|.....+.+++.+..+.... .++||+|+||||||++|++|.... +.+++.++|..+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~~-----------~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~- 440 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQSD-----------STVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA- 440 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCCC-----------CCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh-
Confidence 578999999999999999888877653 479999999999999999997754 67999999998742
Q ss_pred HHHH-HHHH-----------------hccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCC
Q 010133 277 SELR-KLLM-----------------KTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGG 338 (517)
Q Consensus 277 ~~L~-~lf~-----------------~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (517)
..+. .+|. +...+++|||||||.+
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L-------------------------------------- 482 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDM-------------------------------------- 482 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhC--------------------------------------
Confidence 2221 2221 2234689999999986
Q ss_pred CCCchhhHHHHHHHhhcCCc-ccCC------CceEEEEEeCCC-------CCCChhhhccCCce-eeEeccCC--CHHHH
Q 010133 339 EDGNNSITLSGLLNFTDGLW-SCCG------SEKIFVFTTNHI-------EKLDPALLRSGRMD-MHIFMSYC--SYPAL 401 (517)
Q Consensus 339 ~~~~~~~~ls~LLn~lDg~~-s~~~------~~~iiI~TTN~~-------e~LD~ALlRpGR~d-~~I~~~~p--~~e~~ 401 (517)
.......|++.++.-. ..-| .+.-+|+||+.. ..+.+.|.. |+. ..|.+|+. ..+++
T Consensus 483 ----~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l~~~~i~lPpLreR~~Di 556 (686)
T PRK15429 483 ----PLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY--RLNVFPIHLPPLRERPEDI 556 (686)
T ss_pred ----CHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHh--ccCeeEEeCCChhhhHhHH
Confidence 2234455666664321 1101 123466676543 123344444 443 34666665 35677
Q ss_pred HHHHHHhcCCC-------CCCCChHhHHHHHHhhCCCCCCHHHHHHHHHHh---cccHHHHHHHHHHHHHHHHHhhhhcC
Q 010133 402 LILLKNYLGYE-------ESDLEDETLKELEDVVGKAEMTPADISEVLIKN---KRDKCKAVRELLETLKVKAEKNVKHG 471 (517)
Q Consensus 402 ~~l~~~~l~~~-------~~~~~~~~~~~i~~l~~~~~~spadi~~~l~~~---~~~~~~al~~l~~~l~~~~~~~~~~~ 471 (517)
..|++.|+... ...++.+.+..+...-|..++ .++.+++.+. ..+.....+ +-.... ......
T Consensus 557 ~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGNv--rEL~~~i~~a~~~~~~~~i~~~-l~~~~~---~~~~~~- 629 (686)
T PRK15429 557 PLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNV--RELENVIERAVLLTRGNVLQLS-LPDITL---PEPETP- 629 (686)
T ss_pred HHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCcH--HHHHHHHHHHHHhCCCCccccc-Cchhhc---cccccc-
Confidence 77777775321 113455566666666555444 3333333211 111111111 000000 000000
Q ss_pred CccccCCChhHHHHHHHhhcCCCCccchhhh
Q 010133 472 GIIVKNSDYEEEEQEKRALESPIEGSDIEDA 502 (517)
Q Consensus 472 ~~~~~~~~~~~~~~~~r~~~~~l~~~~~~~~ 502 (517)
....... ..++.|++.|...|+..+.|++
T Consensus 630 ~~~~~~~--~~~~~Er~~I~~aL~~~~gn~~ 658 (686)
T PRK15429 630 PAATVVA--QEGEDEYQLIVRVLKETNGVVA 658 (686)
T ss_pred ccccccc--cHHHHHHHHHHHHHHHcCCCcc
Confidence 0000001 1356788999999999999876
No 181
>PRK08939 primosomal protein DnaI; Reviewed
Probab=99.03 E-value=1.2e-09 Score=111.49 Aligned_cols=96 Identities=23% Similarity=0.442 Sum_probs=70.5
Q ss_pred CCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeecccc-
Q 010133 199 PSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVH- 274 (517)
Q Consensus 199 p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~- 274 (517)
..+|+++..++..+..+...+..|+... .. | +..+|++||||||||||+|+.|||+++ |+.+..+.++.+.
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~~---~~-~-~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~ 197 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEAY---PP-G-EKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR 197 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHHh---hc-c-CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH
Confidence 4678888776656666666667777642 21 1 245799999999999999999999998 7888888776642
Q ss_pred ------ChHHHHHHHHhccCCcEEEEccchh
Q 010133 275 ------NNSELRKLLMKTSSKSIIVIEDIDC 299 (517)
Q Consensus 275 ------~~~~L~~lf~~~~~~sII~iDdID~ 299 (517)
.+..+...+.......+|+||||..
T Consensus 198 ~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~ 228 (306)
T PRK08939 198 ELKNSISDGSVKEKIDAVKEAPVLMLDDIGA 228 (306)
T ss_pred HHHHHHhcCcHHHHHHHhcCCCEEEEecCCC
Confidence 1123445566667889999999986
No 182
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.02 E-value=1.3e-08 Score=111.39 Aligned_cols=91 Identities=16% Similarity=0.216 Sum_probs=69.0
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeecccc
Q 010133 198 HPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVH 274 (517)
Q Consensus 198 ~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~ 274 (517)
...+|+++++.+...+++++.+....... .++||+|++||||+++|+++-... +.+|+.+||..+.
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~~-----------~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAMLD-----------APLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhCCC-----------CCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 34579999999999888888887776542 469999999999999999985443 4689999999984
Q ss_pred ChHHHH-HHHHh-----------------ccCCcEEEEccchhh
Q 010133 275 NNSELR-KLLMK-----------------TSSKSIIVIEDIDCS 300 (517)
Q Consensus 275 ~~~~L~-~lf~~-----------------~~~~sII~iDdID~~ 300 (517)
. ..+. .+|.. .....+|||||||.+
T Consensus 268 ~-~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L 310 (520)
T PRK10820 268 D-DVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEM 310 (520)
T ss_pred H-HHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhC
Confidence 3 3332 33421 124578999999987
No 183
>PRK08181 transposase; Validated
Probab=99.02 E-value=1.9e-09 Score=107.82 Aligned_cols=63 Identities=27% Similarity=0.522 Sum_probs=49.4
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccccC-------hHHHHHHHHhccCCcEEEEccchhh
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVHN-------NSELRKLLMKTSSKSIIVIEDIDCS 300 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~~-------~~~L~~lf~~~~~~sII~iDdID~~ 300 (517)
.+++|+||||||||+|+.|+|+++ |+.++.++..++.. +..+.+.+.......+|+|||++..
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~ 179 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYV 179 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccc
Confidence 589999999999999999999765 77888887766522 1234456666678899999999874
No 184
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.01 E-value=2.6e-09 Score=110.27 Aligned_cols=146 Identities=20% Similarity=0.236 Sum_probs=100.2
Q ss_pred CcccccC-ChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC----------------
Q 010133 201 TFDTLAI-DPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY---------------- 263 (517)
Q Consensus 201 ~f~tv~~-~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~---------------- 263 (517)
.|++|.| .+..++.+.. .+... ..+..||||||+|+||+++|.++|+.+..
T Consensus 3 ~~~~i~~~q~~~~~~L~~----~~~~~--------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQN----SIAKN--------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHH----HHHcC--------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 3667777 5555554433 33221 22457999999999999999999998742
Q ss_pred --------ceEEEeeccc-cChHHHHHHHHhcc------CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcc
Q 010133 264 --------DIYDLELTEV-HNNSELRKLLMKTS------SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPE 328 (517)
Q Consensus 264 --------~i~~l~l~~~-~~~~~L~~lf~~~~------~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (517)
+++.+....- ..-+.++.+....+ .+-|++||++|.+
T Consensus 71 ~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~---------------------------- 122 (329)
T PRK08058 71 RIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM---------------------------- 122 (329)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhh----------------------------
Confidence 2333322110 12345666654332 4569999999986
Q ss_pred cccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHH
Q 010133 329 MRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKN 407 (517)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~ 407 (517)
.....+.||..|+.. ++..++|++|+.+++|-|+++. |. ..|+|.+|+.++....++.
T Consensus 123 --------------~~~a~NaLLK~LEEP----p~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 123 --------------TASAANSLLKFLEEP----SGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred --------------CHHHHHHHHHHhcCC----CCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 234677899999875 3457888899999999999998 77 6899999999887766654
No 185
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.01 E-value=1e-08 Score=111.95 Aligned_cols=127 Identities=16% Similarity=0.217 Sum_probs=84.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEE----eeccccChHHHHHHH----------HhccCCcEEEEccchhhhccc
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDL----ELTEVHNNSELRKLL----------MKTSSKSIIVIEDIDCSISLS 304 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l----~l~~~~~~~~L~~lf----------~~~~~~sII~iDdID~~~~~~ 304 (517)
.+||+|+||||||++++++++......|.. ++..+.. ..++.-+ .......+++|||+|.+
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~-~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l---- 312 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTA-AVTRDPETREFTLEGGALVLADNGVCCIDEFDKM---- 312 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccc-cceEccCcceEEecCccEEecCCCEEEEechhhC----
Confidence 599999999999999999999886554433 2211211 1111100 01235689999999986
Q ss_pred cccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcC---------CcccCCCceEEEEEeCCCC
Q 010133 305 NRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDG---------LWSCCGSEKIFVFTTNHIE 375 (517)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg---------~~s~~~~~~iiI~TTN~~e 375 (517)
...+.+.|+..|+. ....-.....||+|+|..+
T Consensus 313 --------------------------------------~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~ 354 (509)
T smart00350 313 --------------------------------------DDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIG 354 (509)
T ss_pred --------------------------------------CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCC
Confidence 22345666666642 1111123356888999763
Q ss_pred -------------CCChhhhccCCceeeEe-ccCCCHHHHHHHHHHhcC
Q 010133 376 -------------KLDPALLRSGRMDMHIF-MSYCSYPALLILLKNYLG 410 (517)
Q Consensus 376 -------------~LD~ALlRpGR~d~~I~-~~~p~~e~~~~l~~~~l~ 410 (517)
.|+|+|+. |||.... +++|+.+....|+++.+.
T Consensus 355 g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 355 GRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred cccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 48999999 9998765 578999999889887653
No 186
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.00 E-value=1.7e-09 Score=103.06 Aligned_cols=98 Identities=24% Similarity=0.464 Sum_probs=69.4
Q ss_pred CCCceecccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh-C----
Q 010133 188 GHPWESVSFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL-G---- 262 (517)
Q Consensus 188 ~~~w~~~~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l-~---- 262 (517)
..+| +..+.|..+++++|+++..+. +.-+.+.. ..| ++++.||||||||+-+.++|.++ |
T Consensus 14 ~l~w--VeKYrP~~l~dIVGNe~tv~r----l~via~~g------nmP---~liisGpPG~GKTTsi~~LAr~LLG~~~k 78 (333)
T KOG0991|consen 14 QLPW--VEKYRPSVLQDIVGNEDTVER----LSVIAKEG------NMP---NLIISGPPGTGKTTSILCLARELLGDSYK 78 (333)
T ss_pred cchH--HHhhCchHHHHhhCCHHHHHH----HHHHHHcC------CCC---ceEeeCCCCCchhhHHHHHHHHHhChhhh
Confidence 3457 778899999999999887544 44444431 122 69999999999999999999987 2
Q ss_pred CceEEEeeccccChHHHH---HHHHhcc------CCcEEEEccchhh
Q 010133 263 YDIYDLELTEVHNNSELR---KLLMKTS------SKSIIVIEDIDCS 300 (517)
Q Consensus 263 ~~i~~l~l~~~~~~~~L~---~lf~~~~------~~sII~iDdID~~ 300 (517)
-.+..+|.++-..-+-++ +.|.+.. ..-||++||.|++
T Consensus 79 e~vLELNASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 79 EAVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSM 125 (333)
T ss_pred hHhhhccCccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchh
Confidence 235566766654433333 4455432 3469999999986
No 187
>PRK04132 replication factor C small subunit; Provisional
Probab=98.99 E-value=8.3e-09 Score=116.86 Aligned_cols=138 Identities=16% Similarity=0.152 Sum_probs=104.4
Q ss_pred eEEeC--CCCCcHHHHHHHHHHHh-----CCceEEEeeccccChHHHHHHHHhc----c----CCcEEEEccchhhhccc
Q 010133 240 YLLYG--PPGTGKSSMIAAMANYL-----GYDIYDLELTEVHNNSELRKLLMKT----S----SKSIIVIEDIDCSISLS 304 (517)
Q Consensus 240 ~LL~G--pPGTGKTsla~alA~~l-----~~~i~~l~l~~~~~~~~L~~lf~~~----~----~~sII~iDdID~~~~~~ 304 (517)
.+..| |++.||||+|.|||+++ +.+++.+|.++..+-+.++.++... + +.-||+|||+|.+
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~L---- 642 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADAL---- 642 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccC----
Confidence 46669 99999999999999998 6689999999876667777776442 1 2369999999987
Q ss_pred cccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhcc
Q 010133 305 NRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRS 384 (517)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRp 384 (517)
+....+.|+..|+-.. +...+|++||+++.+.++|+.
T Consensus 643 --------------------------------------t~~AQnALLk~lEep~----~~~~FILi~N~~~kIi~tIrS- 679 (846)
T PRK04132 643 --------------------------------------TQDAQQALRRTMEMFS----SNVRFILSCNYSSKIIEPIQS- 679 (846)
T ss_pred --------------------------------------CHHHHHHHHHHhhCCC----CCeEEEEEeCChhhCchHHhh-
Confidence 2235677888888642 346789999999999999998
Q ss_pred CCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHH
Q 010133 385 GRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELED 426 (517)
Q Consensus 385 GR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~ 426 (517)
|+ ..+.|.+|+.++....++..+..++...+++.+..|+.
T Consensus 680 -RC-~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~ 719 (846)
T PRK04132 680 -RC-AIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILY 719 (846)
T ss_pred -hc-eEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 87 78999999998888777776654443333444444433
No 188
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.97 E-value=1.2e-08 Score=106.58 Aligned_cols=192 Identities=17% Similarity=0.227 Sum_probs=115.9
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhC-----CceEEEee
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLG-----YDIYDLEL 270 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~-----~~i~~l~l 270 (517)
..+.-+|++++..+.-... ......+...+ |. .-..++||||+|.|||+|++|++++.. ..++.++.
T Consensus 80 l~~~ytFdnFv~g~~N~~A-~aa~~~va~~~------g~-~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~s 151 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLA-YAAAKAVAENP------GG-AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTS 151 (408)
T ss_pred CCCCCchhheeeCCchHHH-HHHHHHHHhcc------CC-cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccH
Confidence 3445589998876654333 23344444443 22 234799999999999999999999872 23444433
Q ss_pred ccccChHHHHH-------HHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCch
Q 010133 271 TEVHNNSELRK-------LLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNN 343 (517)
Q Consensus 271 ~~~~~~~~L~~-------lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (517)
.... ..-+.. -|.+.-+-.+++||||+.+. + ....
T Consensus 152 e~f~-~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~---g----------------------------------k~~~ 193 (408)
T COG0593 152 EDFT-NDFVKALRDNEMEKFKEKYSLDLLLIDDIQFLA---G----------------------------------KERT 193 (408)
T ss_pred HHHH-HHHHHHHHhhhHHHHHHhhccCeeeechHhHhc---C----------------------------------ChhH
Confidence 3221 111111 12111244699999999972 1 1112
Q ss_pred hhHHHHHHHhhcCCcccCCCceEEEEEeCCCCC---CChhhhccCCce--eeEeccCCCHHHHHHHHHHhcCCCCCCCCh
Q 010133 344 SITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEK---LDPALLRSGRMD--MHIFMSYCSYPALLILLKNYLGYEESDLED 418 (517)
Q Consensus 344 ~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~---LD~ALlRpGR~d--~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~ 418 (517)
+..+-.++|.+-. . ++.||+.+-..|.. ++|.|.. ||. ..+.+.+|+.+.+..+++......+..+++
T Consensus 194 qeefFh~FN~l~~---~--~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ 266 (408)
T COG0593 194 QEEFFHTFNALLE---N--GKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPD 266 (408)
T ss_pred HHHHHHHHHHHHh---c--CCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCH
Confidence 3444445555422 1 23555555555554 4689998 776 456889999999999999877766666777
Q ss_pred HhHHHHHHhhCCCCCCHHHHHHHHH
Q 010133 419 ETLKELEDVVGKAEMTPADISEVLI 443 (517)
Q Consensus 419 ~~~~~i~~l~~~~~~spadi~~~l~ 443 (517)
+....++..+. =+-.++.+.+.
T Consensus 267 ev~~~la~~~~---~nvReLegaL~ 288 (408)
T COG0593 267 EVLEFLAKRLD---RNVRELEGALN 288 (408)
T ss_pred HHHHHHHHHhh---ccHHHHHHHHH
Confidence 77777766532 22355555544
No 189
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.97 E-value=9e-09 Score=113.89 Aligned_cols=128 Identities=18% Similarity=0.240 Sum_probs=89.4
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCC--ceEEEeecccc----ChHHHHHHHHh-----------ccCCcEEEEccchhh
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGY--DIYDLELTEVH----NNSELRKLLMK-----------TSSKSIIVIEDIDCS 300 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~--~i~~l~l~~~~----~~~~L~~lf~~-----------~~~~sII~iDdID~~ 300 (517)
.|+||.|+||||||+++++|+..+.. +|+.+.++... ..-.+...+.. .....|||||||+.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 47999999999999999999998864 47777653211 11112211110 124579999999987
Q ss_pred hccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhc-C--------CcccCCCceEEEEEe
Q 010133 301 ISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTD-G--------LWSCCGSEKIFVFTT 371 (517)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lD-g--------~~s~~~~~~iiI~TT 371 (517)
...+++.|+..|+ | ..........||+|+
T Consensus 97 ------------------------------------------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~ 134 (589)
T TIGR02031 97 ------------------------------------------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATY 134 (589)
T ss_pred ------------------------------------------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEec
Confidence 3456778888885 2 211112345778888
Q ss_pred CCCC---CCChhhhccCCceeeEeccCC-CHHHHHHHHHHhc
Q 010133 372 NHIE---KLDPALLRSGRMDMHIFMSYC-SYPALLILLKNYL 409 (517)
Q Consensus 372 N~~e---~LD~ALlRpGR~d~~I~~~~p-~~e~~~~l~~~~l 409 (517)
|..+ .|.++|+. ||+.+|.+.++ ..+++..|++.++
T Consensus 135 np~e~~g~L~~~Lld--Rf~l~v~~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 135 DPAEGGGGLPDHLLD--RLALHVSLEDVASQDLRVEIVRRER 174 (589)
T ss_pred CCccccCCCCHHHHH--hccCeeecCCCCCHHHHHHHHHHHH
Confidence 9776 79999999 99999988875 5677888888765
No 190
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.94 E-value=1.4e-08 Score=109.82 Aligned_cols=248 Identities=11% Similarity=0.121 Sum_probs=141.5
Q ss_pred CcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccccChH
Q 010133 201 TFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVHNNS 277 (517)
Q Consensus 201 ~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~~~~ 277 (517)
.+..+++.......+.+.+...... ...+|+.|++||||+++|+++.... +.+++.++|..+. ..
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~-----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~-~~ 203 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRS-----------SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIP-KD 203 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhcc-----------CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCC-HH
Confidence 3556788877777777666554433 2469999999999999999998875 5799999999883 33
Q ss_pred HHH-HHHHh-----------------ccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCC
Q 010133 278 ELR-KLLMK-----------------TSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGE 339 (517)
Q Consensus 278 ~L~-~lf~~-----------------~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (517)
.+. .+|.. ...+..|||||||.+-
T Consensus 204 ~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~-------------------------------------- 245 (469)
T PRK10923 204 LIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP-------------------------------------- 245 (469)
T ss_pred HHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCC--------------------------------------
Confidence 333 33321 1245789999999871
Q ss_pred CCchhhHHHHHHHhhcCCc-ccCC------CceEEEEEeCCC-------CCCChhhhccCCc-eeeEeccCC--CHHHHH
Q 010133 340 DGNNSITLSGLLNFTDGLW-SCCG------SEKIFVFTTNHI-------EKLDPALLRSGRM-DMHIFMSYC--SYPALL 402 (517)
Q Consensus 340 ~~~~~~~ls~LLn~lDg~~-s~~~------~~~iiI~TTN~~-------e~LD~ALlRpGR~-d~~I~~~~p--~~e~~~ 402 (517)
......|+..++.-. ..-| -..-||+||+.. ..+.+.|.. |+ ...|.+|+. ..+++.
T Consensus 246 ----~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~~PpLreR~~Di~ 319 (469)
T PRK10923 246 ----LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLNVIRVHLPPLRERREDIP 319 (469)
T ss_pred ----HHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--HhcceeecCCCcccchhhHH
Confidence 223445666664321 0001 122456666542 245567776 77 466777776 457777
Q ss_pred HHHHHhcCCC-------CCCCChHhHHHHHHhhCCCCCCHHHHHHHHHH---hcccHHHHHHHHHHHHHHHHHhh--h--
Q 010133 403 ILLKNYLGYE-------ESDLEDETLKELEDVVGKAEMTPADISEVLIK---NKRDKCKAVRELLETLKVKAEKN--V-- 468 (517)
Q Consensus 403 ~l~~~~l~~~-------~~~~~~~~~~~i~~l~~~~~~spadi~~~l~~---~~~~~~~al~~l~~~l~~~~~~~--~-- 468 (517)
.|+..|+... ...++.+.+..+...-|..++ .++.+++.. ...+.....+.+-..+....... .
T Consensus 320 ~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv--~eL~~~i~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 397 (469)
T PRK10923 320 RLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV--RQLENTCRWLTVMAAGQEVLIQDLPGELFESTVPESTSQM 397 (469)
T ss_pred HHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChH--HHHHHHHHHHHHhCCCCcccHHHCcHhhhccccccccccc
Confidence 7887776321 123455666666666555444 444444331 11232333333322221100000 0
Q ss_pred hcCCc-----------cccC---C-ChhHHHHHHHhhcCCCCccchhhhhccC
Q 010133 469 KHGGI-----------IVKN---S-DYEEEEQEKRALESPIEGSDIEDANNCE 506 (517)
Q Consensus 469 ~~~~~-----------~~~~---~-~~~~~~~~~r~~~~~l~~~~~~~~~~~~ 506 (517)
..... .... . .....+.|++.|...|+..+.|++++|+
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~E~~~i~~aL~~~~gn~~~aA~ 450 (469)
T PRK10923 398 QPDSWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAAR 450 (469)
T ss_pred cccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 00000 0000 0 0124677889999999999999988754
No 191
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.93 E-value=1.4e-08 Score=107.90 Aligned_cols=250 Identities=17% Similarity=0.193 Sum_probs=147.7
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHH---hCCceEEEeecc
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANY---LGYDIYDLELTE 272 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~---l~~~i~~l~l~~ 272 (517)
+.+.-+|+++++......++++.+..+.... -.+||.|.+||||..+|++|=+. .+-||+.+||..
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~A~td-----------stVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaA 306 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRIAKTD-----------STVLILGESGTGKELFARAIHNLSPRANGPFIAINCAA 306 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhhcCCC-----------CcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEeccc
Confidence 3456689999999999999988888777663 47999999999999999999554 488999999999
Q ss_pred ccChHHH-HHHHH-------hc-----------cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCC
Q 010133 273 VHNNSEL-RKLLM-------KT-----------SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGS 333 (517)
Q Consensus 273 ~~~~~~L-~~lf~-------~~-----------~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (517)
+. +.-| ..||. .+ .....||||||-.+
T Consensus 307 iP-e~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgem--------------------------------- 352 (560)
T COG3829 307 IP-ETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEM--------------------------------- 352 (560)
T ss_pred CC-HHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccC---------------------------------
Confidence 83 2222 23331 11 24579999999875
Q ss_pred CCCCCCCCchhhHHHHHHHhhcC-----Cccc--CCCceEEEEEeCCCCCCChhhhccCCce---------eeEeccCC-
Q 010133 334 GSVGGEDGNNSITLSGLLNFTDG-----LWSC--CGSEKIFVFTTNHIEKLDPALLRSGRMD---------MHIFMSYC- 396 (517)
Q Consensus 334 ~~~~~~~~~~~~~ls~LLn~lDg-----~~s~--~~~~~iiI~TTN~~e~LD~ALlRpGR~d---------~~I~~~~p- 396 (517)
......-||..+.. +.+. -.-.+-||++||.. | ..++.-|||- ..|.+|+.
T Consensus 353 ---------pl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~n--L-~~~i~~G~FReDLYYRLNV~~i~iPPLR 420 (560)
T COG3829 353 ---------PLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRN--L-EKMIAEGTFREDLYYRLNVIPITIPPLR 420 (560)
T ss_pred ---------CHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcC--H-HHHHhcCcchhhheeeeceeeecCCCcc
Confidence 23455667766641 1111 11235689999863 1 2233334443 22344443
Q ss_pred -CHHHHHHHHHHhcCC-------CCCCCChHhHHHHHHhhCCCCCCHHHHHHHHHHhc----ccHHHHHHHHH-HHHHHH
Q 010133 397 -SYPALLILLKNYLGY-------EESDLEDETLKELEDVVGKAEMTPADISEVLIKNK----RDKCKAVRELL-ETLKVK 463 (517)
Q Consensus 397 -~~e~~~~l~~~~l~~-------~~~~~~~~~~~~i~~l~~~~~~spadi~~~l~~~~----~~~~~al~~l~-~~l~~~ 463 (517)
..+++..|...|+.. ....++.+....+.+..|+.++ .++.+++.+.. .+.......+- ..+...
T Consensus 421 eR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNV--RELeNviER~v~~~~~~~~I~~~~lp~~~l~~k 498 (560)
T COG3829 421 ERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNV--RELENVIERAVNLVESDGLIDADDLPAFALEEK 498 (560)
T ss_pred cCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhCCCCchH--HHHHHHHHHHHhccCCcceeehhhcchhhhccc
Confidence 467777777666532 2223445556666665554443 44444433211 11111112221 222221
Q ss_pred HHhhhhcCC---ccccCCChhHHHHHHHhhcCCCCccchhhhhccCC
Q 010133 464 AEKNVKHGG---IIVKNSDYEEEEQEKRALESPIEGSDIEDANNCEE 507 (517)
Q Consensus 464 ~~~~~~~~~---~~~~~~~~~~~~~~~r~~~~~l~~~~~~~~~~~~~ 507 (517)
..+..+ ..+..-....++.|+..|...|+..+.|.+++|+.
T Consensus 499 ---~~~~~~~~~~~~~~l~~~~e~~Ek~~I~~aL~~~~gn~~~aAk~ 542 (560)
T COG3829 499 ---EPRPETTKQIEVGSLKEALEEYEKHLIREALERHGGNKSKAAKE 542 (560)
T ss_pred ---ccCcCcccCcccccHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 011111 11111222278889999999999999999887653
No 192
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.93 E-value=2.5e-08 Score=108.20 Aligned_cols=71 Identities=34% Similarity=0.597 Sum_probs=56.0
Q ss_pred CCCceecccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEE
Q 010133 188 GHPWESVSFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYD 267 (517)
Q Consensus 188 ~~~w~~~~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~ 267 (517)
..+| +....|.+.++|+...+..++|...+...+. |...++-+||+||||||||+++++||+++++.+..
T Consensus 6 ~~~W--~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 6 SEPW--VEKYAPKTLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred cCcc--chhcCCCCHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 4578 6678999999999998886666666554332 33445568899999999999999999999988876
Q ss_pred E
Q 010133 268 L 268 (517)
Q Consensus 268 l 268 (517)
-
T Consensus 76 w 76 (519)
T PF03215_consen 76 W 76 (519)
T ss_pred e
Confidence 4
No 193
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.92 E-value=4.1e-08 Score=107.24 Aligned_cols=177 Identities=13% Similarity=0.098 Sum_probs=113.2
Q ss_pred CcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccccChH
Q 010133 201 TFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVHNNS 277 (517)
Q Consensus 201 ~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~~~~ 277 (517)
.+..++|.....+++++.+....... .++||+|++||||+++|++|.... +.+++.+||..+.. .
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~-----------~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~-~ 252 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASD-----------LNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPE-S 252 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCC-----------CcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCCh-H
Confidence 57789999999999999888877653 479999999999999999997764 67999999998843 2
Q ss_pred HHH-HHHH-----------------hccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCC
Q 010133 278 ELR-KLLM-----------------KTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGE 339 (517)
Q Consensus 278 ~L~-~lf~-----------------~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (517)
.+. .+|. +.....+|||||||.+-
T Consensus 253 ~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~-------------------------------------- 294 (509)
T PRK05022 253 LAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELP-------------------------------------- 294 (509)
T ss_pred HHHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCC--------------------------------------
Confidence 222 3332 12345789999999871
Q ss_pred CCchhhHHHHHHHhhcCCc-ccCC------CceEEEEEeCCC-------CCCChhhhccCCce-eeEeccCC--CHHHHH
Q 010133 340 DGNNSITLSGLLNFTDGLW-SCCG------SEKIFVFTTNHI-------EKLDPALLRSGRMD-MHIFMSYC--SYPALL 402 (517)
Q Consensus 340 ~~~~~~~ls~LLn~lDg~~-s~~~------~~~iiI~TTN~~-------e~LD~ALlRpGR~d-~~I~~~~p--~~e~~~ 402 (517)
......|++.++.-. ..-| -+.-||+|||.. ..+.+.|.. |+. ..|++|+. ..+++.
T Consensus 295 ----~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~~~~i~lPpLreR~eDI~ 368 (509)
T PRK05022 295 ----LALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLSVFPLSVPPLRERGDDVL 368 (509)
T ss_pred ----HHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHHHcCCccHHHHh--cccccEeeCCCchhchhhHH
Confidence 233455666664211 0001 123466666543 234555555 554 34666665 356777
Q ss_pred HHHHHhcCC-------CCCCCChHhHHHHHHhhCCCCC
Q 010133 403 ILLKNYLGY-------EESDLEDETLKELEDVVGKAEM 433 (517)
Q Consensus 403 ~l~~~~l~~-------~~~~~~~~~~~~i~~l~~~~~~ 433 (517)
.|+..|+.. ....++.+.+..|...-|..++
T Consensus 369 ~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNv 406 (509)
T PRK05022 369 LLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNV 406 (509)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcH
Confidence 777776532 1223455566666665554444
No 194
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=2.4e-08 Score=104.88 Aligned_cols=135 Identities=22% Similarity=0.305 Sum_probs=92.9
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCceEEE-eecccc--C----hHHHHHHHHhcc--CCcEEEEccchhhhccccccc
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYDL-ELTEVH--N----NSELRKLLMKTS--SKSIIVIEDIDCSISLSNRNK 308 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i~~l-~l~~~~--~----~~~L~~lf~~~~--~~sII~iDdID~~~~~~~~~~ 308 (517)
..+||+||||+|||+||+.+|...++||+.+ +..++. + -..+.+.|..+- .-+||++|||+.+++...-
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpI-- 616 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPI-- 616 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccccc--
Confidence 4799999999999999999999999999976 222221 2 234778888763 4499999999999754322
Q ss_pred cCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCC-hhhhccCCc
Q 010133 309 RSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLD-PALLRSGRM 387 (517)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD-~ALlRpGR~ 387 (517)
++..++.++..|+..+..... .|...+|++||...+.|. -.++. .|
T Consensus 617 ------------------------------GPRfSN~vlQaL~VllK~~pp-kg~kLli~~TTS~~~vL~~m~i~~--~F 663 (744)
T KOG0741|consen 617 ------------------------------GPRFSNLVLQALLVLLKKQPP-KGRKLLIFGTTSRREVLQEMGILD--CF 663 (744)
T ss_pred ------------------------------CchhhHHHHHHHHHHhccCCC-CCceEEEEecccHHHHHHHcCHHH--hh
Confidence 234577888888888876533 233344455666555542 24555 88
Q ss_pred eeeEeccCCCH-HHHHHHHHH
Q 010133 388 DMHIFMSYCSY-PALLILLKN 407 (517)
Q Consensus 388 d~~I~~~~p~~-e~~~~l~~~ 407 (517)
+..|++|..+. ++...++..
T Consensus 664 ~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 664 SSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred hheeecCccCchHHHHHHHHH
Confidence 88999988764 555444443
No 195
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.91 E-value=2.7e-08 Score=101.67 Aligned_cols=74 Identities=22% Similarity=0.218 Sum_probs=46.9
Q ss_pred HHHHHHHhhcCCcccCCCceEEEEEeCC------------CCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCC
Q 010133 346 TLSGLLNFTDGLWSCCGSEKIFVFTTNH------------IEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEE 413 (517)
Q Consensus 346 ~ls~LLn~lDg~~s~~~~~~iiI~TTN~------------~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~ 413 (517)
.++-|-+.|+.-.+ -|||++||+ |..++..|+. |+ ..|...+++.++.+++++..+..++
T Consensus 294 cFsfLnralEs~~s-----PiiIlATNRg~~~irGt~~~sphGiP~DlLD--Rl-lII~t~py~~~ei~~Il~iR~~~E~ 365 (398)
T PF06068_consen 294 CFSFLNRALESELS-----PIIILATNRGITKIRGTDIISPHGIPLDLLD--RL-LIIRTKPYSEEEIKQILKIRAKEED 365 (398)
T ss_dssp HHHHHHHHHTSTT-------EEEEEES-SEEE-BTTS-EEETT--HHHHT--TE-EEEEE----HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhcCCCC-----cEEEEecCceeeeccCccCcCCCCCCcchHh--hc-EEEECCCCCHHHHHHHHHhhhhhhc
Confidence 44445455554322 489999984 4567889998 88 7889999999999999999888888
Q ss_pred CCCChHhHHHHHHh
Q 010133 414 SDLEDETLKELEDV 427 (517)
Q Consensus 414 ~~~~~~~~~~i~~l 427 (517)
..++.+.++.+..+
T Consensus 366 v~i~~~al~~L~~i 379 (398)
T PF06068_consen 366 VEISEDALDLLTKI 379 (398)
T ss_dssp --B-HHHHHHHHHH
T ss_pred CcCCHHHHHHHHHH
Confidence 77777777776655
No 196
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.90 E-value=3.3e-08 Score=106.38 Aligned_cols=247 Identities=14% Similarity=0.162 Sum_probs=133.6
Q ss_pred cccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccccChHH
Q 010133 202 FDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVHNNSE 278 (517)
Q Consensus 202 f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~~~~~ 278 (517)
+..+++.......+.+.+....... ..+|++|++||||+++|+++.... +.+++.++|..+.. ..
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~a~~~-----------~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~-~~ 209 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKIALSQ-----------ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPE-SL 209 (457)
T ss_pred ccceecccHHHhHHHHHHHHHcCCC-----------cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCH-HH
Confidence 3456676677777777666666542 469999999999999999997654 57999999998843 33
Q ss_pred HH-HHHHh-----------------ccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCC
Q 010133 279 LR-KLLMK-----------------TSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGED 340 (517)
Q Consensus 279 L~-~lf~~-----------------~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (517)
+. .+|.. .....+|||||||.+-
T Consensus 210 ~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~--------------------------------------- 250 (457)
T PRK11361 210 LESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMP--------------------------------------- 250 (457)
T ss_pred HHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhCC---------------------------------------
Confidence 33 33321 1245799999999871
Q ss_pred CchhhHHHHHHHhhcCCc-ccCC------CceEEEEEeCCC-------CCCChhhhccCCc-eeeEeccCC--CHHHHHH
Q 010133 341 GNNSITLSGLLNFTDGLW-SCCG------SEKIFVFTTNHI-------EKLDPALLRSGRM-DMHIFMSYC--SYPALLI 403 (517)
Q Consensus 341 ~~~~~~ls~LLn~lDg~~-s~~~------~~~iiI~TTN~~-------e~LD~ALlRpGR~-d~~I~~~~p--~~e~~~~ 403 (517)
......|++.++.-. ..-| .+.-||+|||.. ..+.+.|.. |+ ...|.+|+. ..+++..
T Consensus 251 ---~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~--~l~~~~i~~ppLreR~~di~~ 325 (457)
T PRK11361 251 ---LVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFY--RLNVIHLILPPLRDRREDISL 325 (457)
T ss_pred ---HHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHH--HhccceecCCChhhchhhHHH
Confidence 223455666665321 1001 124567777643 123333333 33 233444443 2455566
Q ss_pred HHHHhcCCC-------CCCCChHhHHHHHHhhCCCCCCHHHHHHHHHH---hcccHHHHHHHHHHHHHHHHHhhhhcCCc
Q 010133 404 LLKNYLGYE-------ESDLEDETLKELEDVVGKAEMTPADISEVLIK---NKRDKCKAVRELLETLKVKAEKNVKHGGI 473 (517)
Q Consensus 404 l~~~~l~~~-------~~~~~~~~~~~i~~l~~~~~~spadi~~~l~~---~~~~~~~al~~l~~~l~~~~~~~~~~~~~ 473 (517)
|+..|+... ...++.+.+..+...-|..++ .++.+++.. ...+.....+.+-..+.............
T Consensus 326 l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv--~eL~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 403 (457)
T PRK11361 326 LANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNI--RELSNVIERAVVMNSGPIIFSEDLPPQIRQPVCNAGEVKTA 403 (457)
T ss_pred HHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcH--HHHHHHHHHHHHhCCCCcccHHHChHhhhcccccccccccc
Confidence 666665321 123556666666666554444 344443321 11222223333322221110000000000
Q ss_pred cccCCC--hhHHHHHHHhhcCCCCccchhhhhccC
Q 010133 474 IVKNSD--YEEEEQEKRALESPIEGSDIEDANNCE 506 (517)
Q Consensus 474 ~~~~~~--~~~~~~~~r~~~~~l~~~~~~~~~~~~ 506 (517)
.....+ ...++.|++.|...|+..+.|++++|+
T Consensus 404 ~~~~~~l~~~~~~~E~~~i~~al~~~~gn~~~aA~ 438 (457)
T PRK11361 404 PVGERNLKEEIKRVEKRIIMEVLEQQEGNRTRTAL 438 (457)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 000001 114677889999999999999988765
No 197
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.90 E-value=1.9e-07 Score=94.32 Aligned_cols=60 Identities=23% Similarity=0.312 Sum_probs=49.7
Q ss_pred eEEEEEeCC------------CCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHh
Q 010133 365 KIFVFTTNH------------IEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDV 427 (517)
Q Consensus 365 ~iiI~TTN~------------~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l 427 (517)
-|||++||+ |..++..|+. |+ ..|...+.+.++.+.|++.....++..++++.++.+..+
T Consensus 321 PIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~i 392 (450)
T COG1224 321 PIIILATNRGMTKIRGTDIESPHGIPLDLLD--RL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDI 392 (450)
T ss_pred cEEEEEcCCceeeecccCCcCCCCCCHhhhh--he-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhh
Confidence 488999985 5667889998 77 677888888999999999988888888888888887765
No 198
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.88 E-value=3.6e-08 Score=101.78 Aligned_cols=59 Identities=20% Similarity=0.258 Sum_probs=49.3
Q ss_pred hhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHh
Q 010133 343 NSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNY 408 (517)
Q Consensus 343 ~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~ 408 (517)
.....+.||..|+.- +.+.++|++|++++.|.|.+++ |+ ..|.|++|+.++....+...
T Consensus 145 ~~~AaNaLLKtLEEP----p~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 145 NVAAANALLKTLEEP----PPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred CHHHHHHHHHHhcCC----CcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 345678899999864 4568899999999999999999 88 78999999999888777653
No 199
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.88 E-value=6.2e-09 Score=93.74 Aligned_cols=77 Identities=22% Similarity=0.334 Sum_probs=58.2
Q ss_pred CChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC---ceEEEeeccccChHHHHHHH
Q 010133 207 IDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY---DIYDLELTEVHNNSELRKLL 283 (517)
Q Consensus 207 ~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~---~i~~l~l~~~~~~~~L~~lf 283 (517)
|.....+++.+.+..+.... .++||+|+|||||+++|++|....+. +++.++|.... .+++
T Consensus 2 G~S~~~~~l~~~l~~~a~~~-----------~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----~~~l 65 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKSS-----------SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----AELL 65 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCSS-----------S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----HHHH
T ss_pred CCCHHHHHHHHHHHHHhCCC-----------CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----HHHH
Confidence 55667788888888887653 57999999999999999999887753 66667777653 3455
Q ss_pred HhccCCcEEEEccchhh
Q 010133 284 MKTSSKSIIVIEDIDCS 300 (517)
Q Consensus 284 ~~~~~~sII~iDdID~~ 300 (517)
..+ .+.+|+|+|||.+
T Consensus 66 ~~a-~~gtL~l~~i~~L 81 (138)
T PF14532_consen 66 EQA-KGGTLYLKNIDRL 81 (138)
T ss_dssp HHC-TTSEEEEECGCCS
T ss_pred HHc-CCCEEEECChHHC
Confidence 554 7789999999997
No 200
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.87 E-value=7.6e-08 Score=89.23 Aligned_cols=110 Identities=22% Similarity=0.294 Sum_probs=79.3
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHhC-----------------------CceEEEeeccc---cChHHHHHHHHhcc---
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYLG-----------------------YDIYDLELTEV---HNNSELRKLLMKTS--- 287 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l~-----------------------~~i~~l~l~~~---~~~~~L~~lf~~~~--- 287 (517)
+..||||||+|+||+++|.++|..+- -+++.++.... ..-+.++.+.....
T Consensus 19 ~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~ 98 (162)
T PF13177_consen 19 PHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSLSP 98 (162)
T ss_dssp -SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS-
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHHHHH
Confidence 34799999999999999999998772 24455544332 23466776665542
Q ss_pred ---CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCc
Q 010133 288 ---SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSE 364 (517)
Q Consensus 288 ---~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~ 364 (517)
..-|++|||+|.+ .....+.||..|+.. ...
T Consensus 99 ~~~~~KviiI~~ad~l------------------------------------------~~~a~NaLLK~LEep----p~~ 132 (162)
T PF13177_consen 99 SEGKYKVIIIDEADKL------------------------------------------TEEAQNALLKTLEEP----PEN 132 (162)
T ss_dssp TTSSSEEEEEETGGGS-------------------------------------------HHHHHHHHHHHHST----TTT
T ss_pred hcCCceEEEeehHhhh------------------------------------------hHHHHHHHHHHhcCC----CCC
Confidence 3569999999987 456788999999876 345
Q ss_pred eEEEEEeCCCCCCChhhhccCCceeeEeccC
Q 010133 365 KIFVFTTNHIEKLDPALLRSGRMDMHIFMSY 395 (517)
Q Consensus 365 ~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~ 395 (517)
.++|++|+.++.|-|.++. |. ..|.|++
T Consensus 133 ~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~ 160 (162)
T PF13177_consen 133 TYFILITNNPSKILPTIRS--RC-QVIRFRP 160 (162)
T ss_dssp EEEEEEES-GGGS-HHHHT--TS-EEEEE--
T ss_pred EEEEEEECChHHChHHHHh--hc-eEEecCC
Confidence 8899999999999999998 77 5666654
No 201
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.8e-08 Score=100.20 Aligned_cols=65 Identities=31% Similarity=0.449 Sum_probs=54.5
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccC--------hHHHHHHHHhc------cCCcEEEEccchhhh
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHN--------NSELRKLLMKT------SSKSIIVIEDIDCSI 301 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~--------~~~L~~lf~~~------~~~sII~iDdID~~~ 301 (517)
+.++||.||.|||||.||+.||..++.||-.-|++.+.. +.-|.+|+..+ ..+.||+|||||.+.
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIa 175 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIA 175 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhh
Confidence 347999999999999999999999999999999988832 23466677655 368999999999984
No 202
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.84 E-value=1.2e-07 Score=101.73 Aligned_cols=241 Identities=16% Similarity=0.172 Sum_probs=129.9
Q ss_pred cccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccccChHH
Q 010133 202 FDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVHNNSE 278 (517)
Q Consensus 202 f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~~~~~ 278 (517)
+..+++.....+.+.+.+...... ..+++++|++||||+++|+++.... +.+++.++|..+. +..
T Consensus 138 ~~~lig~s~~~~~l~~~i~~~a~~-----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~-~~~ 205 (445)
T TIGR02915 138 LRGLITSSPGMQKICRTIEKIAPS-----------DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIP-ENL 205 (445)
T ss_pred ccceeecCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCC-hHH
Confidence 445666666666666655544332 2479999999999999999997664 5789999999884 333
Q ss_pred HHHH-HHh-----------------ccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCC
Q 010133 279 LRKL-LMK-----------------TSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGED 340 (517)
Q Consensus 279 L~~l-f~~-----------------~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (517)
+... |.. ...+.+|||||||.+
T Consensus 206 ~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l---------------------------------------- 245 (445)
T TIGR02915 206 LESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDL---------------------------------------- 245 (445)
T ss_pred HHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhC----------------------------------------
Confidence 4333 321 134689999999987
Q ss_pred CchhhHHHHHHHhhcCCc-ccCC------CceEEEEEeCCC-------CCCChhhhccCCce-eeEeccCC--CHHHHHH
Q 010133 341 GNNSITLSGLLNFTDGLW-SCCG------SEKIFVFTTNHI-------EKLDPALLRSGRMD-MHIFMSYC--SYPALLI 403 (517)
Q Consensus 341 ~~~~~~ls~LLn~lDg~~-s~~~------~~~iiI~TTN~~-------e~LD~ALlRpGR~d-~~I~~~~p--~~e~~~~ 403 (517)
.......|+..++.-. ..-| -..-+|+||+.. ..+.+.|.. |+. ..|.+|+. ..+++..
T Consensus 246 --~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~lPpLr~R~~Di~~ 321 (445)
T TIGR02915 246 --PLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIAEISITIPPLRSRDGDAVL 321 (445)
T ss_pred --CHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH--HhccceecCCCchhchhhHHH
Confidence 1234455666554211 1111 123456666543 334555554 443 45566665 3466666
Q ss_pred HHHHhcCCC-------CCCCChHhHHHHHHhhCCCCCCHHHHHHHHHHh---cccHHHHHHHHHHHHHHHHHhhhhcCCc
Q 010133 404 LLKNYLGYE-------ESDLEDETLKELEDVVGKAEMTPADISEVLIKN---KRDKCKAVRELLETLKVKAEKNVKHGGI 473 (517)
Q Consensus 404 l~~~~l~~~-------~~~~~~~~~~~i~~l~~~~~~spadi~~~l~~~---~~~~~~al~~l~~~l~~~~~~~~~~~~~ 473 (517)
|+..|+... ...++.+.+..+...-|..++ .++.+++.+. ..+.....+.+- +.. .......
T Consensus 322 l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv--reL~~~i~~a~~~~~~~~i~~~~l~--~~~----~~~~~~~ 393 (445)
T TIGR02915 322 LANAFLERFARELKRKTKGFTDDALRALEAHAWPGNV--RELENKVKRAVIMAEGNQITAEDLG--LDA----RERAETP 393 (445)
T ss_pred HHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChH--HHHHHHHHHHHHhCCCCcccHHHcC--Ccc----ccccccc
Confidence 777665321 123445555555554443333 3444333211 011111111110 000 0000000
Q ss_pred cccCCChhHHHHHHHhhcCCCCccchhhhhccC
Q 010133 474 IVKNSDYEEEEQEKRALESPIEGSDIEDANNCE 506 (517)
Q Consensus 474 ~~~~~~~~~~~~~~r~~~~~l~~~~~~~~~~~~ 506 (517)
....-+...++.|++.+...|...+.|++++|+
T Consensus 394 ~~~~l~~~~~~~E~~~i~~al~~~~gn~~~aA~ 426 (445)
T TIGR02915 394 LEVNLREVRERAEREAVRKAIARVDGNIARAAE 426 (445)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 000001113467889999999999999988764
No 203
>PRK15115 response regulator GlrR; Provisional
Probab=98.83 E-value=5.4e-08 Score=104.41 Aligned_cols=236 Identities=11% Similarity=0.110 Sum_probs=128.1
Q ss_pred cccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccccChHHHH
Q 010133 204 TLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVHNNSELR 280 (517)
Q Consensus 204 tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~~~~~L~ 280 (517)
.+++.......+++.+...... ...++|+|++||||+++|+++.... +.+++.++|..+. +..+.
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~-----------~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~-~~~~~ 202 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQS-----------DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALP-EQLLE 202 (444)
T ss_pred cccccCHHHHHHHHHHHhhccC-----------CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCC-HHHHH
Confidence 3455555555555544443332 2469999999999999999997764 5799999999883 33333
Q ss_pred H-HHHh-----------------ccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCc
Q 010133 281 K-LLMK-----------------TSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGN 342 (517)
Q Consensus 281 ~-lf~~-----------------~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (517)
. +|.. .....+|||||||.+-
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~----------------------------------------- 241 (444)
T PRK15115 203 SELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMP----------------------------------------- 241 (444)
T ss_pred HHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccCC-----------------------------------------
Confidence 3 3321 1245799999999871
Q ss_pred hhhHHHHHHHhhcCCc-ccCC------CceEEEEEeCCCCCCChhhhccCCc---------eeeEeccCC--CHHHHHHH
Q 010133 343 NSITLSGLLNFTDGLW-SCCG------SEKIFVFTTNHIEKLDPALLRSGRM---------DMHIFMSYC--SYPALLIL 404 (517)
Q Consensus 343 ~~~~ls~LLn~lDg~~-s~~~------~~~iiI~TTN~~e~LD~ALlRpGR~---------d~~I~~~~p--~~e~~~~l 404 (517)
......|+..++.-. ..-| ....+|+||+.. ++ .++..|+| ...|.+|+. ..+++..|
T Consensus 242 -~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~-~~~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l 317 (444)
T PRK15115 242 -APLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LP-KAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLL 317 (444)
T ss_pred -HHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HH-HHHHcCCccHHHHHhhceeeecCCChHhccccHHHH
Confidence 223445566654221 1001 134667777642 33 33334565 345555554 23556666
Q ss_pred HHHhcCCC-------CCCCChHhHHHHHHhhCCCCCCHHHHHHHHHH---hcccHHHHHHHHHHHHHHHHHhhhhcCCcc
Q 010133 405 LKNYLGYE-------ESDLEDETLKELEDVVGKAEMTPADISEVLIK---NKRDKCKAVRELLETLKVKAEKNVKHGGII 474 (517)
Q Consensus 405 ~~~~l~~~-------~~~~~~~~~~~i~~l~~~~~~spadi~~~l~~---~~~~~~~al~~l~~~l~~~~~~~~~~~~~~ 474 (517)
+..|+... ...++.+.+..+...-|..++ .++.+++.. ...+.....+.+-..+.. . ...
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNv--reL~~~i~~~~~~~~~~~i~~~~l~~~~~~------~--~~~ 387 (444)
T PRK15115 318 ANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV--RQLVNVIEQCVALTSSPVISDALVEQALEG------E--NTA 387 (444)
T ss_pred HHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChH--HHHHHHHHHHHHhCCCCccChhhhhhhhcc------c--ccc
Confidence 66665321 113455666666655444433 344333321 111222222222111110 0 000
Q ss_pred ccCCChhHHHHHHHhhcCCCCccchhhhhccC
Q 010133 475 VKNSDYEEEEQEKRALESPIEGSDIEDANNCE 506 (517)
Q Consensus 475 ~~~~~~~~~~~~~r~~~~~l~~~~~~~~~~~~ 506 (517)
.+.-....++.|+..|...|...+.|++++|+
T Consensus 388 ~~~~~~~~~~~E~~~i~~al~~~~gn~~~aA~ 419 (444)
T PRK15115 388 LPTFVEARNQFELNYLRKLLQITKGNVTHAAR 419 (444)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 00111124667899999999999999988754
No 204
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.83 E-value=4.8e-08 Score=101.87 Aligned_cols=156 Identities=18% Similarity=0.232 Sum_probs=105.4
Q ss_pred CCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHH----hCCceEEEeecccc
Q 010133 199 PSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANY----LGYDIYDLELTEVH 274 (517)
Q Consensus 199 p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~----l~~~i~~l~l~~~~ 274 (517)
...++.++|.....+++++.+..+. ..| ..+|++|++||||+.+|++|... .+.||+.+||..+.
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~a-------p~~----~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAYA-------PSG----LPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhhC-------CCC----CcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 3468999999999998888888733 333 36999999999999999999532 47799999999997
Q ss_pred ChHHHHHHHHhc-----------------cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCC
Q 010133 275 NNSELRKLLMKT-----------------SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVG 337 (517)
Q Consensus 275 ~~~~L~~lf~~~-----------------~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (517)
.+-.+..+|... ....+||+|||..+-
T Consensus 143 en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP------------------------------------ 186 (403)
T COG1221 143 ENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLP------------------------------------ 186 (403)
T ss_pred cCHHHHHHhccccceeecccCCcCchheecCCCEEehhhhhhCC------------------------------------
Confidence 766666676421 246899999999872
Q ss_pred CCCCchhhHHHHHHHhhcC-Cc----c--cCCCceEEEEEeCCCCCCChh------hhccCCceeeEeccCC--CHHHHH
Q 010133 338 GEDGNNSITLSGLLNFTDG-LW----S--CCGSEKIFVFTTNHIEKLDPA------LLRSGRMDMHIFMSYC--SYPALL 402 (517)
Q Consensus 338 ~~~~~~~~~ls~LLn~lDg-~~----s--~~~~~~iiI~TTN~~e~LD~A------LlRpGR~d~~I~~~~p--~~e~~~ 402 (517)
......||..||. .+ + .-...+-+|++|| +.++.+ |.|. |+...|.+|+. ..+++.
T Consensus 187 ------~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~--~~l~~~~~~g~dl~~r-l~~~~I~LPpLrER~~Di~ 257 (403)
T COG1221 187 ------PEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATT--EDLEEAVLAGADLTRR-LNILTITLPPLRERKEDIL 257 (403)
T ss_pred ------HhHHHHHHHHHHcCceEecCCCCCcCCCceeeeccc--cCHHHHHHhhcchhhh-hcCceecCCChhhchhhHH
Confidence 1233446666663 11 1 0112344555554 233333 3321 67777788776 467777
Q ss_pred HHHHHhcC
Q 010133 403 ILLKNYLG 410 (517)
Q Consensus 403 ~l~~~~l~ 410 (517)
.|+..|+.
T Consensus 258 ~L~e~Fl~ 265 (403)
T COG1221 258 LLAEHFLK 265 (403)
T ss_pred HHHHHHHH
Confidence 78777764
No 205
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.82 E-value=2.1e-08 Score=95.57 Aligned_cols=46 Identities=30% Similarity=0.502 Sum_probs=34.5
Q ss_pred CcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh
Q 010133 201 TFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 201 ~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l 261 (517)
.|++|+|.+..|..+.-.. .| ..++||+||||||||++|++++..+
T Consensus 1 Df~dI~GQe~aKrAL~iAA------------aG---~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAA------------AG---GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHH------------HC---C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHH------------cC---CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 4889999999988774322 23 2489999999999999999999876
No 206
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.80 E-value=2e-08 Score=103.29 Aligned_cols=84 Identities=24% Similarity=0.406 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccccC---------hH
Q 010133 210 EKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVHN---------NS 277 (517)
Q Consensus 210 ~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~~---------~~ 277 (517)
+..+.+++....|+.+- .. ...+++||||||||||+|+.|||+++ +..++.++...+.. ..
T Consensus 163 ~~~~~~~~~~~~f~~~f---~~----~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~ 235 (329)
T PRK06835 163 KNMEKILEKCKNFIENF---DK----NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDK 235 (329)
T ss_pred HHHHHHHHHHHHHHHHH---hc----cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccch
Confidence 34455555555566542 11 12689999999999999999999987 77888877766521 11
Q ss_pred HHHHHHHhccCCcEEEEccchhh
Q 010133 278 ELRKLLMKTSSKSIIVIEDIDCS 300 (517)
Q Consensus 278 ~L~~lf~~~~~~sII~iDdID~~ 300 (517)
.....+.......+|+|||+...
T Consensus 236 ~~~~~~~~l~~~DLLIIDDlG~e 258 (329)
T PRK06835 236 ELEEVYDLLINCDLLIIDDLGTE 258 (329)
T ss_pred hHHHHHHHhccCCEEEEeccCCC
Confidence 11222444456689999999863
No 207
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=2e-07 Score=96.35 Aligned_cols=122 Identities=17% Similarity=0.239 Sum_probs=90.9
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHhCC------------------------ceEEEeec---cccChHHHHHHHHhc---
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYLGY------------------------DIYDLELT---EVHNNSELRKLLMKT--- 286 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l~~------------------------~i~~l~l~---~~~~~~~L~~lf~~~--- 286 (517)
+.+|||+||+|+||+++|.++|..+-. +++.+... ..-.-+.++.+....
T Consensus 24 ~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~ 103 (334)
T PRK07993 24 HHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYEH 103 (334)
T ss_pred ceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhhc
Confidence 348999999999999999999998832 23333221 111344566655433
Q ss_pred c---CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCC
Q 010133 287 S---SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGS 363 (517)
Q Consensus 287 ~---~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~ 363 (517)
+ ..-|++||++|.+ .....+.||..|+.- +.
T Consensus 104 ~~~g~~kV~iI~~ae~m------------------------------------------~~~AaNaLLKtLEEP----p~ 137 (334)
T PRK07993 104 ARLGGAKVVWLPDAALL------------------------------------------TDAAANALLKTLEEP----PE 137 (334)
T ss_pred cccCCceEEEEcchHhh------------------------------------------CHHHHHHHHHHhcCC----CC
Confidence 2 4569999999987 345678899988874 45
Q ss_pred ceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHH
Q 010133 364 EKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKN 407 (517)
Q Consensus 364 ~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~ 407 (517)
..++|.+|++++.|-|.++. |.- .+.|++|+.++....+..
T Consensus 138 ~t~fiL~t~~~~~lLpTIrS--RCq-~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 138 NTWFFLACREPARLLATLRS--RCR-LHYLAPPPEQYALTWLSR 178 (334)
T ss_pred CeEEEEEECChhhChHHHHh--ccc-cccCCCCCHHHHHHHHHH
Confidence 68999999999999999998 884 689999999888776654
No 208
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.79 E-value=1.2e-07 Score=102.30 Aligned_cols=246 Identities=14% Similarity=0.167 Sum_probs=138.4
Q ss_pred ccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccccChHHH
Q 010133 203 DTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVHNNSEL 279 (517)
Q Consensus 203 ~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~~~~~L 279 (517)
..+++......++.+.+...... ..++++.|++||||+++++++.... +.+++.++|..+ ..+.+
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~-----------~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~-~~~~~ 201 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRS-----------DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAI-PKDLI 201 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCc-----------CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCC-CHHHH
Confidence 34677777777777766654433 2469999999999999999997764 579999999988 33334
Q ss_pred HHHH-Hh-----------------ccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCC
Q 010133 280 RKLL-MK-----------------TSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDG 341 (517)
Q Consensus 280 ~~lf-~~-----------------~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (517)
...+ .. ...+++|||||||.+-
T Consensus 202 ~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~---------------------------------------- 241 (463)
T TIGR01818 202 ESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMP---------------------------------------- 241 (463)
T ss_pred HHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCC----------------------------------------
Confidence 3332 21 1246899999999871
Q ss_pred chhhHHHHHHHhhcC-CcccCC------CceEEEEEeCCC-------CCCChhhhccCCce-eeEeccCCC--HHHHHHH
Q 010133 342 NNSITLSGLLNFTDG-LWSCCG------SEKIFVFTTNHI-------EKLDPALLRSGRMD-MHIFMSYCS--YPALLIL 404 (517)
Q Consensus 342 ~~~~~ls~LLn~lDg-~~s~~~------~~~iiI~TTN~~-------e~LD~ALlRpGR~d-~~I~~~~p~--~e~~~~l 404 (517)
......|++.++. ....-+ -+.-||+||+.. ..+.+.|.. |+. .+|++|+.. .+++..|
T Consensus 242 --~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l 317 (463)
T TIGR01818 242 --LDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIRIHLPPLRERREDIPRL 317 (463)
T ss_pred --HHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCcceecCCCcccchhhHHHH
Confidence 2234555655542 111101 123456666532 234455555 554 477888775 6788888
Q ss_pred HHHhcCCC-------CCCCChHhHHHHHHhhCCCCCCHHHHHHHHHHh---cccHHHHHHHHHHHHHHHHHhh-h--hcC
Q 010133 405 LKNYLGYE-------ESDLEDETLKELEDVVGKAEMTPADISEVLIKN---KRDKCKAVRELLETLKVKAEKN-V--KHG 471 (517)
Q Consensus 405 ~~~~l~~~-------~~~~~~~~~~~i~~l~~~~~~spadi~~~l~~~---~~~~~~al~~l~~~l~~~~~~~-~--~~~ 471 (517)
+..|+... ...++.+.+..|...-|..++ .++.+++.+. ........+.+-..+....... . ...
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv--reL~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 395 (463)
T TIGR01818 318 ARHFLALAARELDVEPKLLDPEALERLKQLRWPGNV--RQLENLCRWLTVMASGDEVLVSDLPAELALTGRPASAPDSDG 395 (463)
T ss_pred HHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChH--HHHHHHHHHHHHhCCCCcccHHhchHHHhccccccccccccc
Confidence 87776321 123555666666655443333 4555444321 1122222333322221100000 0 000
Q ss_pred C--c------------cc-cCCC--hhHHHHHHHhhcCCCCccchhhhhccC
Q 010133 472 G--I------------IV-KNSD--YEEEEQEKRALESPIEGSDIEDANNCE 506 (517)
Q Consensus 472 ~--~------------~~-~~~~--~~~~~~~~r~~~~~l~~~~~~~~~~~~ 506 (517)
. . .. .... +..++.|+..|...|+..+.|++++|+
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~E~~~i~~al~~~~gn~~~aA~ 447 (463)
T TIGR01818 396 QDSWDEALEAWAKQALSRGEQGLLDRALPEFERPLLEAALQHTRGHKQEAAA 447 (463)
T ss_pred cccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 0 0 00 0001 124677888999999999999988754
No 209
>PRK06526 transposase; Provisional
Probab=98.79 E-value=7.6e-09 Score=102.81 Aligned_cols=64 Identities=19% Similarity=0.378 Sum_probs=47.2
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccccC-------hHHHHHHHHhccCCcEEEEccchhh
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVHN-------NSELRKLLMKTSSKSIIVIEDIDCS 300 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~~-------~~~L~~lf~~~~~~sII~iDdID~~ 300 (517)
+.+++|+||||||||+|+.+|+.++ |+.++..++..+.. ...+...+.....+.+|+|||++..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~ 171 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYI 171 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccC
Confidence 3589999999999999999998876 77776666654311 1123444555567789999999974
No 210
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.78 E-value=3.5e-08 Score=98.15 Aligned_cols=90 Identities=24% Similarity=0.459 Sum_probs=61.8
Q ss_pred cccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccccCh--
Q 010133 202 FDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVHNN-- 276 (517)
Q Consensus 202 f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~~~-- 276 (517)
+.++-+.+......+..+..+.. +|. -+.+++||||||||||+||.|||+++ |..++.+..+++...
T Consensus 78 ~~d~~~~~~~~~~~l~~~~~~~~---~~~-----~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk 149 (254)
T COG1484 78 EFDFEFQPGIDKKALEDLASLVE---FFE-----RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLK 149 (254)
T ss_pred cccccCCcchhHHHHHHHHHHHH---Hhc-----cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 34445556556666566655553 233 24589999999999999999999988 788888888876321
Q ss_pred ------HHHHHHHHhccCCcEEEEccchh
Q 010133 277 ------SELRKLLMKTSSKSIIVIEDIDC 299 (517)
Q Consensus 277 ------~~L~~lf~~~~~~sII~iDdID~ 299 (517)
..-.++.......-+|+||||-.
T Consensus 150 ~~~~~~~~~~~l~~~l~~~dlLIiDDlG~ 178 (254)
T COG1484 150 AAFDEGRLEEKLLRELKKVDLLIIDDIGY 178 (254)
T ss_pred HHHhcCchHHHHHHHhhcCCEEEEecccC
Confidence 11122333356678999999976
No 211
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.78 E-value=3e-07 Score=94.33 Aligned_cols=122 Identities=17% Similarity=0.220 Sum_probs=91.0
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCC------------------------ceEEEeec--cccChHHHHHHHHhc---c-
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGY------------------------DIYDLELT--EVHNNSELRKLLMKT---S- 287 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~------------------------~i~~l~l~--~~~~~~~L~~lf~~~---~- 287 (517)
.+|||+||+|+||+++|.++|..+.. +++.+... ....-+.+|.+.... +
T Consensus 25 HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~~ 104 (325)
T PRK06871 25 HALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQHAQ 104 (325)
T ss_pred eeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhccc
Confidence 48999999999999999999998843 23333221 111345566654433 2
Q ss_pred --CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCce
Q 010133 288 --SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEK 365 (517)
Q Consensus 288 --~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~ 365 (517)
..-|++||++|.+ .....+.||..|+.- ....
T Consensus 105 ~g~~KV~iI~~a~~m------------------------------------------~~~AaNaLLKtLEEP----p~~~ 138 (325)
T PRK06871 105 QGGNKVVYIQGAERL------------------------------------------TEAAANALLKTLEEP----RPNT 138 (325)
T ss_pred cCCceEEEEechhhh------------------------------------------CHHHHHHHHHHhcCC----CCCe
Confidence 3468999999986 345678899988874 3557
Q ss_pred EEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHh
Q 010133 366 IFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNY 408 (517)
Q Consensus 366 iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~ 408 (517)
++|.+|++++.|.|.++. |. ..+.|.+|+.++....+...
T Consensus 139 ~fiL~t~~~~~llpTI~S--RC-~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 139 YFLLQADLSAALLPTIYS--RC-QTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred EEEEEECChHhCchHHHh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 899999999999999998 87 67899999999887777654
No 212
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.77 E-value=3.1e-08 Score=99.49 Aligned_cols=159 Identities=21% Similarity=0.349 Sum_probs=88.4
Q ss_pred CCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCc---eEEEeeccccCh
Q 010133 200 STFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYD---IYDLELTEVHNN 276 (517)
Q Consensus 200 ~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~---i~~l~l~~~~~~ 276 (517)
.+|.+++.+-..-.+...-+..++.. ++++||+||+|||||++++..-..+.-. +..++++...+.
T Consensus 7 ~~~~~~~VpT~dt~r~~~ll~~l~~~-----------~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts 75 (272)
T PF12775_consen 7 MPFNEILVPTVDTVRYSYLLDLLLSN-----------GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTS 75 (272)
T ss_dssp ------T---HHHHHHHHHHHHHHHC-----------TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHH
T ss_pred cccceEEeCcHHHHHHHHHHHHHHHc-----------CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCH
Confidence 45666666665555555556666655 3689999999999999998876655433 334566665555
Q ss_pred HHHHHHHHhc-------------cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCch
Q 010133 277 SELRKLLMKT-------------SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNN 343 (517)
Q Consensus 277 ~~L~~lf~~~-------------~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (517)
..+++++... ..++|+||||+..-. . +.-..
T Consensus 76 ~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p~-----~-------------------------------d~ygt 119 (272)
T PF12775_consen 76 NQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMPQ-----P-------------------------------DKYGT 119 (272)
T ss_dssp HHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S---------------------------------------TTS-
T ss_pred HHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCCC-----C-------------------------------CCCCC
Confidence 5566555332 245899999999631 0 00111
Q ss_pred hhHHHHHHHh-hc--CCcccCC------CceEEEEEeCCCC---CCChhhhccCCceeeEeccCCCHHHHHHHHHHhc
Q 010133 344 SITLSGLLNF-TD--GLWSCCG------SEKIFVFTTNHIE---KLDPALLRSGRMDMHIFMSYCSYPALLILLKNYL 409 (517)
Q Consensus 344 ~~~ls~LLn~-lD--g~~s~~~------~~~iiI~TTN~~e---~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l 409 (517)
+.. .+||.. || |.+.... .+..+|++.|... .+++.|+| .| ..+.+++|+.+....|+..++
T Consensus 120 q~~-iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~~~p~~~sl~~If~~il 193 (272)
T PF12775_consen 120 QPP-IELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILNIPYPSDESLNTIFSSIL 193 (272)
T ss_dssp -HH-HHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE----TCCHHHHHHHHHH
T ss_pred cCH-HHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEEecCCChHHHHHHHHHHH
Confidence 222 244433 33 4333211 2356777777532 47889998 77 578999999888877776655
No 213
>PRK06921 hypothetical protein; Provisional
Probab=98.76 E-value=5.1e-08 Score=97.62 Aligned_cols=63 Identities=27% Similarity=0.430 Sum_probs=45.2
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHh----CCceEEEeeccccCh-----HHHHHHHHhccCCcEEEEccchh
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYL----GYDIYDLELTEVHNN-----SELRKLLMKTSSKSIIVIEDIDC 299 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l----~~~i~~l~l~~~~~~-----~~L~~lf~~~~~~sII~iDdID~ 299 (517)
..+++|+||||||||+|+.|||+++ +..++.++..++... ..+...+.......+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 3589999999999999999999986 566777765543111 11223344455678999999964
No 214
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.76 E-value=2.2e-07 Score=95.16 Aligned_cols=122 Identities=16% Similarity=0.243 Sum_probs=86.9
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHhCC---------------------ceEEEee--ccc-------cChHHHHHHHHhc
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYLGY---------------------DIYDLEL--TEV-------HNNSELRKLLMKT 286 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l~~---------------------~i~~l~l--~~~-------~~~~~L~~lf~~~ 286 (517)
+.+|||+||+|+||+++|.++|..+.. +++.++. ..- -.-+.++.+....
T Consensus 26 ~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~ 105 (319)
T PRK08769 26 GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKL 105 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHH
Confidence 347999999999999999999987732 2333321 000 0133455554332
Q ss_pred ---c---CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCccc
Q 010133 287 ---S---SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSC 360 (517)
Q Consensus 287 ---~---~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~ 360 (517)
+ ..-|++||++|.+ .....+.||..|+--
T Consensus 106 ~~~p~~g~~kV~iI~~ae~m------------------------------------------~~~AaNaLLKtLEEP--- 140 (319)
T PRK08769 106 ALTPQYGIAQVVIVDPADAI------------------------------------------NRAACNALLKTLEEP--- 140 (319)
T ss_pred hhCcccCCcEEEEeccHhhh------------------------------------------CHHHHHHHHHHhhCC---
Confidence 2 3358889999886 345678899888875
Q ss_pred CCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHH
Q 010133 361 CGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKN 407 (517)
Q Consensus 361 ~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~ 407 (517)
....++|.+|+.++.|-|.++. |+ ..|.|++|+.++....+..
T Consensus 141 -p~~~~fiL~~~~~~~lLpTIrS--RC-q~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 141 -SPGRYLWLISAQPARLPATIRS--RC-QRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred -CCCCeEEEEECChhhCchHHHh--hh-eEeeCCCcCHHHHHHHHHH
Confidence 3457889999999999999998 88 6789999998887666654
No 215
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.76 E-value=9.2e-08 Score=98.42 Aligned_cols=123 Identities=18% Similarity=0.269 Sum_probs=87.3
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHHHhC-------------------------CceEEEeecc----------ccChHHHH
Q 010133 236 WKRGYLLYGPPGTGKSSMIAAMANYLG-------------------------YDIYDLELTE----------VHNNSELR 280 (517)
Q Consensus 236 ~~rg~LL~GpPGTGKTsla~alA~~l~-------------------------~~i~~l~l~~----------~~~~~~L~ 280 (517)
.+.+|||+||+|+|||++|.++|..+. -+++.++... .-.-+.+|
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR 99 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVR 99 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHH
Confidence 345899999999999999999999874 2355554321 01344566
Q ss_pred HHHHhcc------CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhh
Q 010133 281 KLLMKTS------SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFT 354 (517)
Q Consensus 281 ~lf~~~~------~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~l 354 (517)
.+..... ..-|++||++|.+ .....+.||..+
T Consensus 100 ~l~~~~~~~p~~~~~kV~iiEp~~~L------------------------------------------d~~a~naLLk~L 137 (325)
T PRK08699 100 EIIDNVYLTSVRGGLRVILIHPAESM------------------------------------------NLQAANSLLKVL 137 (325)
T ss_pred HHHHHHhhCcccCCceEEEEechhhC------------------------------------------CHHHHHHHHHHH
Confidence 6654432 3468899999986 233456677777
Q ss_pred cCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHH
Q 010133 355 DGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKN 407 (517)
Q Consensus 355 Dg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~ 407 (517)
+... .+..+|++|++++.+.|.+.+ |. ..+.|++|+.++....+..
T Consensus 138 Eep~----~~~~~Ilvth~~~~ll~ti~S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 138 EEPP----PQVVFLLVSHAADKVLPTIKS--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HhCc----CCCEEEEEeCChHhChHHHHH--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 6652 236688899999999999988 77 7889999998887665543
No 216
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.76 E-value=5.7e-09 Score=98.28 Aligned_cols=63 Identities=27% Similarity=0.625 Sum_probs=46.9
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeecccc-------ChHHHHHHHHhccCCcEEEEccchh
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVH-------NNSELRKLLMKTSSKSIIVIEDIDC 299 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~-------~~~~L~~lf~~~~~~sII~iDdID~ 299 (517)
..|++|+||||||||+||.|||+++ |+.++.++.+++. .+....+++.......+|+|||+-.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~ 119 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGY 119 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccccEecccccce
Confidence 4689999999999999999999876 8888888887762 2223445566666778999999964
No 217
>PF08740 BCS1_N: BCS1 N terminal; InterPro: IPR014851 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. This domain is found at the N terminus of the mitochondrial BSC1 subfamily, belonging to the AAA ATPase family. At2g21640 and BCS1 are both highly stress responsive genes which encode mitochondrial proteins. The promoter of BCS1 was not responsive to H2O2 or rotenone, but highly responsive to salicylic acid (SA). The SA dependent pathway represented by BCS1 is one of at least three distinctive pathways to regulate mitochondrial stress response at a transcriptional level []. The BCS1 product is a mitochondrial protein required for the assembly of respiratory complex III []. BCS1, a component of the inner membrane of mitochondria, belongs to the group of proteins with internal, noncleavable import signals. It has a transmembrane domain (amino acid residues 51 to 68), a presequence type helix (residues 69 to 83), and an import auxiliary region (residues 84 to 126) [].
Probab=98.75 E-value=3.9e-07 Score=86.34 Aligned_cols=134 Identities=20% Similarity=0.273 Sum_probs=92.5
Q ss_pred EEEEecCCCcCchHHHHHHHHHhccc-cCCCCceeEEEecCC----------------------CCceEEeccCCCcccc
Q 010133 50 YFDITEIDGVNTNELYNAVQLYLSSS-VSISGSRLSLTRALN----------------------SSAITFGLSNNDSIYD 106 (517)
Q Consensus 50 ~i~i~E~~~~~~~~~y~~~~~~l~~~-~~~~~~~l~~~~~~~----------------------~~~~~~~~~~~~~~~d 106 (517)
++.|+ ..|++|++++.||+++ ....++++.+.+..+ ...+.+....| .+..
T Consensus 28 sv~I~-----~~D~~Y~~lm~Wls~q~~~~~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~G-~h~F 101 (187)
T PF08740_consen 28 SVEIP-----SDDEAYDWLMRWLSSQPFSKRSRHLSATTRSNSSWDDDESDDEDSWDTNTSDDKKKPIRFTPSPG-THWF 101 (187)
T ss_pred EEEEC-----CCCHHHHHHHHHHhhCCcccccceeEEEeecccccccccccccchhccccccCCcCCeEEEeCCC-CEEE
Confidence 55665 5899999999999997 556689998888432 23344544445 6777
Q ss_pred ccCCceeEEEEEecCCCCccccc-CCCCcCcceEEEEEecccchhHHhhhHHHHHHHHHHHHHHccccc--eeccCCCCC
Q 010133 107 SFNGVGVLWEHVVSPRQTQTFSW-RPLPEEKRGFTLRIKKKDKSLILDSYLDFIMEKANDIRRKNQDRL--LYTNSRGGS 183 (517)
Q Consensus 107 ~f~g~~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~l~f~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 183 (517)
.|+|..++..... . ...... .+.+ ..+++|++..++++. |+.+|++|++...++...+ ||.+.+..
T Consensus 102 ~y~G~~~~~~R~~-~--~~~~~~~~~~~--~e~l~l~~lg~s~~~-----l~~ll~ear~~~~~~~~~~t~Iy~~~~~~- 170 (187)
T PF08740_consen 102 WYKGRWFWFSRQR-E--SNSYNSWTGAP--DETLTLSCLGRSPKP-----LKDLLEEAREYYLKKQKGKTTIYRADGSE- 170 (187)
T ss_pred EECCEEEEEEEEe-c--cccccccCCCC--ceEEEEEEecCCHHH-----HHHHHHHHHHHHHHhcCCcEEEEeCCCCC-
Confidence 8899866555544 2 211111 1222 458999999988764 5689999999888765544 88765331
Q ss_pred CCCCCCCceecccCCCCCcccc
Q 010133 184 LDSRGHPWESVSFKHPSTFDTL 205 (517)
Q Consensus 184 ~~~~~~~w~~~~~~~p~~f~tv 205 (517)
..|..+..+++++++||
T Consensus 171 -----~~W~~~~~r~~RplsTV 187 (187)
T PF08740_consen 171 -----YRWRRVASRPKRPLSTV 187 (187)
T ss_pred -----CCCcCCCCcCCCCCCCC
Confidence 16888888899999986
No 218
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=5.2e-08 Score=100.37 Aligned_cols=129 Identities=22% Similarity=0.285 Sum_probs=87.9
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccC--------hHHHHHHHHhcc------CCcEEEEccchhhhcc
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHN--------NSELRKLLMKTS------SKSIIVIEDIDCSISL 303 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~--------~~~L~~lf~~~~------~~sII~iDdID~~~~~ 303 (517)
-++||.||.|+|||.|++.||.-++.||...||+.+.- ++-+.+|+..+. ...||||||+|.+...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 47999999999999999999999999999999999831 456788887763 6799999999998310
Q ss_pred ccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCccc---------CCCceEEEEEeCC-
Q 010133 304 SNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSC---------CGSEKIFVFTTNH- 373 (517)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~---------~~~~~iiI~TTN~- 373 (517)
...- ....+-...-...+||..++|-.-+ ..++.+.|=|||-
T Consensus 307 ~~~i----------------------------~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnIL 358 (564)
T KOG0745|consen 307 AESI----------------------------HTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNIL 358 (564)
T ss_pred Cccc----------------------------cccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceE
Confidence 0000 0000112334667888888875311 1234455555553
Q ss_pred ------CCCCChhhhccCCce-eeEeccCC
Q 010133 374 ------IEKLDPALLRSGRMD-MHIFMSYC 396 (517)
Q Consensus 374 ------~e~LD~ALlRpGR~d-~~I~~~~p 396 (517)
--.||.-+-| |++ ..+-|+.|
T Consensus 359 FiasGAF~~Ldk~I~r--R~~d~slGFg~~ 386 (564)
T KOG0745|consen 359 FIASGAFVGLDKIISR--RLDDKSLGFGAP 386 (564)
T ss_pred EEecccccchHHHHHH--hhcchhcccCCC
Confidence 3456777777 665 45567777
No 219
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.67 E-value=7.8e-07 Score=88.72 Aligned_cols=46 Identities=20% Similarity=0.197 Sum_probs=32.4
Q ss_pred CChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 207 IDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 207 ~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~ 262 (517)
......++++..+...+... +.-++|+||||+|||++++.+++.+.
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~----------~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQR----------EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcC----------CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 33445555666555444321 12488999999999999999999986
No 220
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.66 E-value=3.7e-07 Score=97.76 Aligned_cols=85 Identities=14% Similarity=0.183 Sum_probs=60.2
Q ss_pred cccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccccChHHHH
Q 010133 204 TLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVHNNSELR 280 (517)
Q Consensus 204 tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~~~~~L~ 280 (517)
.+++.......+++++..+... ...++++|++||||+++++++-... +.+++.++|..+. ...+.
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~~-----------~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~-~~~~~ 207 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAPS-----------EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALN-ESLLE 207 (441)
T ss_pred ceEecCHHHHHHHHHHhhccCC-----------CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCC-HHHHH
Confidence 3556666666666666444322 3579999999999999999996554 5799999999874 34444
Q ss_pred HH-HHh-----------------ccCCcEEEEccchhh
Q 010133 281 KL-LMK-----------------TSSKSIIVIEDIDCS 300 (517)
Q Consensus 281 ~l-f~~-----------------~~~~sII~iDdID~~ 300 (517)
.. |.. ...+++|||||||.+
T Consensus 208 ~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l 245 (441)
T PRK10365 208 SELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDI 245 (441)
T ss_pred HHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccC
Confidence 43 321 124689999999987
No 221
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.65 E-value=4.3e-07 Score=92.92 Aligned_cols=122 Identities=20% Similarity=0.244 Sum_probs=90.6
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHhCC-----------------------ceEEEeecc---ccChHHHHHHHHh---cc
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYLGY-----------------------DIYDLELTE---VHNNSELRKLLMK---TS 287 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l~~-----------------------~i~~l~l~~---~~~~~~L~~lf~~---~~ 287 (517)
+.+|||+||+|+||+++|.++|..+.. +++.+.... .-.-+.++.+... .+
T Consensus 25 ~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~~ 104 (319)
T PRK06090 25 PGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQESS 104 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhhCc
Confidence 348999999999999999999998732 344443321 1133455555332 22
Q ss_pred ---CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCc
Q 010133 288 ---SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSE 364 (517)
Q Consensus 288 ---~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~ 364 (517)
..-|++||++|.+ .....+.||..++.- +.+
T Consensus 105 ~~~~~kV~iI~~ae~m------------------------------------------~~~AaNaLLKtLEEP----p~~ 138 (319)
T PRK06090 105 QLNGYRLFVIEPADAM------------------------------------------NESASNALLKTLEEP----APN 138 (319)
T ss_pred ccCCceEEEecchhhh------------------------------------------CHHHHHHHHHHhcCC----CCC
Confidence 3469999999986 345678899998874 355
Q ss_pred eEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHH
Q 010133 365 KIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKN 407 (517)
Q Consensus 365 ~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~ 407 (517)
.++|++|+.++.|-|.++. |. ..+.|++|+.++....+..
T Consensus 139 t~fiL~t~~~~~lLpTI~S--RC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 139 CLFLLVTHNQKRLLPTIVS--RC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred eEEEEEECChhhChHHHHh--cc-eeEeCCCCCHHHHHHHHHH
Confidence 8899999999999999998 88 6889999999888766654
No 222
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.65 E-value=7.8e-07 Score=87.14 Aligned_cols=63 Identities=25% Similarity=0.371 Sum_probs=54.7
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccChHHHHHHHHhcc-CCcEEEEccchhh
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNNSELRKLLMKTS-SKSIIVIEDIDCS 300 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~~~~L~~lf~~~~-~~sII~iDdID~~ 300 (517)
.|-.++||+|||||..++++|..+|..++.++|++..+...+.++|..+. ..+-+++||++++
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~GaW~cfdefnrl 96 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQSGAWLCFDEFNRL 96 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHHT-EEEEETCCCS
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhcCchhhhhhhhhh
Confidence 47789999999999999999999999999999999988899999998764 7899999999987
No 223
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.64 E-value=7.2e-07 Score=87.95 Aligned_cols=60 Identities=23% Similarity=0.328 Sum_probs=46.2
Q ss_pred eEEEEEeCC-------------CCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHh
Q 010133 365 KIFVFTTNH-------------IEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDV 427 (517)
Q Consensus 365 ~iiI~TTN~-------------~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l 427 (517)
-++||+||+ |..+++.|+. |+ +.|..-+.+.++.++|++.....++..++++.++.+.++
T Consensus 326 PivifAsNrG~~~irGt~d~~sPhGip~dllD--Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~ 398 (456)
T KOG1942|consen 326 PIVIFASNRGMCTIRGTEDILSPHGIPPDLLD--RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEI 398 (456)
T ss_pred ceEEEecCCcceeecCCcCCCCCCCCCHHHhh--he-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhh
Confidence 478888885 4556888888 77 666666667788888888888888878888888888774
No 224
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.64 E-value=2.8e-07 Score=92.00 Aligned_cols=162 Identities=19% Similarity=0.251 Sum_probs=104.8
Q ss_pred CCCceecccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCc---
Q 010133 188 GHPWESVSFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYD--- 264 (517)
Q Consensus 188 ~~~w~~~~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~--- 264 (517)
..+| +....|.++++|++.++... -+.+|... .+.| ..|+|||||||||+.+.|.|..+-.+
T Consensus 28 ~~pw--vekyrP~~l~dv~~~~ei~s----t~~~~~~~------~~lP---h~L~YgPPGtGktsti~a~a~~ly~~~~~ 92 (360)
T KOG0990|consen 28 PQPW--VEKYRPPFLGIVIKQEPIWS----TENRYSGM------PGLP---HLLFYGPPGTGKTSTILANARDFYSPHPT 92 (360)
T ss_pred CCCC--ccCCCCchhhhHhcCCchhh----HHHHhccC------CCCC---cccccCCCCCCCCCchhhhhhhhcCCCCc
Confidence 3457 67788999999999887644 44455332 2333 79999999999999999999988442
Q ss_pred ---eEEEeeccccC---hHHHHHHHHhcc---------CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCccc
Q 010133 265 ---IYDLELTEVHN---NSELRKLLMKTS---------SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEM 329 (517)
Q Consensus 265 ---i~~l~l~~~~~---~~~L~~lf~~~~---------~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (517)
+..++.++-.. ...-.+.|+.+. ..-.|++||.|+..
T Consensus 93 ~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT---------------------------- 144 (360)
T KOG0990|consen 93 TSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT---------------------------- 144 (360)
T ss_pred hhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhh----------------------------
Confidence 22334443321 222334454443 45789999999862
Q ss_pred ccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhc
Q 010133 330 RCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYL 409 (517)
Q Consensus 330 ~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l 409 (517)
+...+.|-..+..+. .+.-++.-+|++..+.|++.. |+ ....|.+.+..+......+.+
T Consensus 145 --------------~~AQnALRRviek~t----~n~rF~ii~n~~~ki~pa~qs--Rc-trfrf~pl~~~~~~~r~shi~ 203 (360)
T KOG0990|consen 145 --------------RDAQNALRRVIEKYT----ANTRFATISNPPQKIHPAQQS--RC-TRFRFAPLTMAQQTERQSHIR 203 (360)
T ss_pred --------------HHHHHHHHHHHHHhc----cceEEEEeccChhhcCchhhc--cc-ccCCCCCCChhhhhhHHHHHH
Confidence 233445555555542 223444678999999999997 77 345666666666655666655
Q ss_pred CCCC
Q 010133 410 GYEE 413 (517)
Q Consensus 410 ~~~~ 413 (517)
..+.
T Consensus 204 e~e~ 207 (360)
T KOG0990|consen 204 ESEQ 207 (360)
T ss_pred hcch
Confidence 4444
No 225
>PRK09183 transposase/IS protein; Provisional
Probab=98.62 E-value=7.4e-08 Score=96.11 Aligned_cols=63 Identities=17% Similarity=0.360 Sum_probs=46.3
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccccC-------hHHHHHHHHh-ccCCcEEEEccchhh
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVHN-------NSELRKLLMK-TSSKSIIVIEDIDCS 300 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~~-------~~~L~~lf~~-~~~~sII~iDdID~~ 300 (517)
.+++|+||||||||+|+.+||+.+ |+.+..+++..+.. ...+...+.. ...+.+++|||++..
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYL 176 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccC
Confidence 479999999999999999997764 77887777665421 1123344544 456789999999863
No 226
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.62 E-value=5.4e-07 Score=88.32 Aligned_cols=172 Identities=22% Similarity=0.303 Sum_probs=116.7
Q ss_pred cccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh-CCceEE-----
Q 010133 194 VSFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL-GYDIYD----- 267 (517)
Q Consensus 194 ~~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l-~~~i~~----- 267 (517)
+....|.+|+.+....+....+.. .... ...| .+|+|||+|+||-|.+.++-+++ |..+..
T Consensus 4 vdkyrpksl~~l~~~~e~~~~Lks----l~~~------~d~P---Hll~yGPSGaGKKTrimclL~elYG~gveklki~~ 70 (351)
T KOG2035|consen 4 VDKYRPKSLDELIYHEELANLLKS----LSST------GDFP---HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIET 70 (351)
T ss_pred hhhcCcchhhhcccHHHHHHHHHH----hccc------CCCC---eEEEECCCCCCchhhHHHHHHHHhCCCchheeeee
Confidence 455688899998887776655533 2211 1122 69999999999999999998887 322211
Q ss_pred ----------Eeeccc-------------cCh--HHHHHHHHhcc-----------CCcEEEEccchhhhccccccccCC
Q 010133 268 ----------LELTEV-------------HNN--SELRKLLMKTS-----------SKSIIVIEDIDCSISLSNRNKRSN 311 (517)
Q Consensus 268 ----------l~l~~~-------------~~~--~~L~~lf~~~~-----------~~sII~iDdID~~~~~~~~~~~~~ 311 (517)
+.++.+ ... --++.++.+.. .--+|+|-|.|.+
T Consensus 71 ~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L----------- 139 (351)
T KOG2035|consen 71 RTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL----------- 139 (351)
T ss_pred EEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh-----------
Confidence 122222 111 12455554321 2258999999987
Q ss_pred CCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeE
Q 010133 312 GSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHI 391 (517)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I 391 (517)
.+....+|-.-|+...++|. +|+.+|...++-+++.. |. ..|
T Consensus 140 -------------------------------T~dAQ~aLRRTMEkYs~~~R----lIl~cns~SriIepIrS--RC-l~i 181 (351)
T KOG2035|consen 140 -------------------------------TRDAQHALRRTMEKYSSNCR----LILVCNSTSRIIEPIRS--RC-LFI 181 (351)
T ss_pred -------------------------------hHHHHHHHHHHHHHHhcCce----EEEEecCcccchhHHhh--he-eEE
Confidence 23345566677777766553 77888999999999997 76 678
Q ss_pred eccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHh
Q 010133 392 FMSYCSYPALLILLKNYLGYEESDLEDETLKELEDV 427 (517)
Q Consensus 392 ~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l 427 (517)
.++.|+.++...++...+..++..++.+++..|++.
T Consensus 182 Rvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~k 217 (351)
T KOG2035|consen 182 RVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEK 217 (351)
T ss_pred eCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHH
Confidence 999999999999999988888777766666666553
No 227
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.57 E-value=7.7e-07 Score=92.35 Aligned_cols=156 Identities=18% Similarity=0.264 Sum_probs=102.9
Q ss_pred CCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEee--------
Q 010133 199 PSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLEL-------- 270 (517)
Q Consensus 199 p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l-------- 270 (517)
.-+|.-++|.+..|..++-.... |--.|+|+-|+.|||||++++|||..|.--.....|
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av~-------------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAVD-------------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhcc-------------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 44677888999998887553221 222489999999999999999999988321111111
Q ss_pred ------------------------------ccccChH------HHHHHHHh-----------ccCCcEEEEccchhhhcc
Q 010133 271 ------------------------------TEVHNNS------ELRKLLMK-----------TSSKSIIVIEDIDCSISL 303 (517)
Q Consensus 271 ------------------------------~~~~~~~------~L~~lf~~-----------~~~~sII~iDdID~~~~~ 303 (517)
....+.. ++.+.+.. ..++.|++|||+..+
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL--- 156 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLL--- 156 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccc---
Confidence 1111111 12333321 125789999999865
Q ss_pred ccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhh---------cCCcccCCCceEEEEEeCCC
Q 010133 304 SNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFT---------DGLWSCCGSEKIFVFTTNHI 374 (517)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~l---------Dg~~s~~~~~~iiI~TTN~~ 374 (517)
.......||+.+ +|+.-+..-..++|+|.|.-
T Consensus 157 ---------------------------------------~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPE 197 (423)
T COG1239 157 ---------------------------------------DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPE 197 (423)
T ss_pred ---------------------------------------cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCcc
Confidence 123455566655 45544445567899999965
Q ss_pred -CCCChhhhccCCceeeEeccCC-CHHHHHHHHHHhcCC
Q 010133 375 -EKLDPALLRSGRMDMHIFMSYC-SYPALLILLKNYLGY 411 (517)
Q Consensus 375 -e~LD~ALlRpGR~d~~I~~~~p-~~e~~~~l~~~~l~~ 411 (517)
..|-|-|+- ||+.+|.+.+| +.+++..+.++-+..
T Consensus 198 eGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 198 EGELRPQLLD--RFGLEVDTHYPLDLEERVEIIRRRLAF 234 (423)
T ss_pred ccccchhhHh--hhcceeeccCCCCHHHHHHHHHHHHHh
Confidence 467889999 99999999888 577788887765443
No 228
>PHA02624 large T antigen; Provisional
Probab=98.55 E-value=3.2e-07 Score=99.45 Aligned_cols=126 Identities=19% Similarity=0.211 Sum_probs=81.6
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccChHHHHHHHHhccCCcEEEEccchhhhccccccccCCC
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNNSELRKLLMKTSSKSIIVIEDIDCSISLSNRNKRSNG 312 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~~~~L~~lf~~~~~~sII~iDdID~~~~~~~~~~~~~~ 312 (517)
|+|.++.+|||||||||||+|+.+|++.++..+..++++. +.+.-.+.-+...-+++|||+-.-+- ...
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt----~ks~FwL~pl~D~~~~l~dD~t~~~~---~~~---- 495 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP----DKLNFELGCAIDQFMVVFEDVKGQPA---DNK---- 495 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCc----chhHHHhhhhhhceEEEeeecccccc---ccc----
Confidence 6788999999999999999999999999976666666433 23333444455667999999964320 000
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccC-----CCc-----eEEEEEeCCCCCCChhhh
Q 010133 313 SGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCC-----GSE-----KIFVFTTNHIEKLDPALL 382 (517)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~-----~~~-----~iiI~TTN~~e~LD~ALl 382 (517)
..+ .+..-..+.-|-|.+||-..-+ ... --+|.|||. ..|+..|.
T Consensus 496 -------------------~Lp-----~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~ 550 (647)
T PHA02624 496 -------------------DLP-----SGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVK 550 (647)
T ss_pred -------------------cCC-----cccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHH
Confidence 000 0111223566788899871110 000 135778886 46788888
Q ss_pred ccCCceeeEeccCC
Q 010133 383 RSGRMDMHIFMSYC 396 (517)
Q Consensus 383 RpGR~d~~I~~~~p 396 (517)
- ||-.++.|.+-
T Consensus 551 ~--Rf~~~~~F~~k 562 (647)
T PHA02624 551 A--RFAKVLDFKPK 562 (647)
T ss_pred H--HHHHhcccccc
Confidence 8 99888888653
No 229
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=4e-06 Score=84.34 Aligned_cols=69 Identities=20% Similarity=0.308 Sum_probs=47.6
Q ss_pred ccCChHHHHHHHHHHHHHHhchhHHHhh-CCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccc
Q 010133 205 LAIDPEKKIEIMEDLKDFANGMSFYQKT-GRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEV 273 (517)
Q Consensus 205 v~~~~~~k~~i~~~l~~fl~~~~~y~~~-G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~ 273 (517)
++|..+.|+.+-=.+..-..+...-..+ .---|+++|..||.|.|||-+|+-||...+.||+.+..+.+
T Consensus 17 IIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKf 86 (444)
T COG1220 17 IIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKF 86 (444)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeee
Confidence 5777777777654443332222111111 11236799999999999999999999999999999865543
No 230
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.55 E-value=3.7e-07 Score=98.96 Aligned_cols=47 Identities=26% Similarity=0.483 Sum_probs=34.5
Q ss_pred CCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh
Q 010133 200 STFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 200 ~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l 261 (517)
..|++|.|....++.+ ..-+.. ...++|.||||||||+++++|++.+
T Consensus 189 ~d~~dv~Gq~~~~~al----~~aa~~-----------g~~vlliG~pGsGKTtlar~l~~ll 235 (499)
T TIGR00368 189 LDLKDIKGQQHAKRAL----EIAAAG-----------GHNLLLFGPPGSGKTMLASRLQGIL 235 (499)
T ss_pred CCHHHhcCcHHHHhhh----hhhccC-----------CCEEEEEecCCCCHHHHHHHHhccc
Confidence 4789999987775543 211111 2369999999999999999998754
No 231
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.53 E-value=3.1e-06 Score=89.96 Aligned_cols=89 Identities=13% Similarity=0.120 Sum_probs=69.2
Q ss_pred CcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccccChH
Q 010133 201 TFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVHNNS 277 (517)
Q Consensus 201 ~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~~~~ 277 (517)
.+..++|.....+++.+.+....... -.+|++|++||||..+|++|=... +.||+.|||..+..+-
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s~-----------a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPSD-----------ASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCCC-----------CCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 46678999999999999888877763 479999999999999999995544 6799999999984332
Q ss_pred HHHHHHHhc-----------------cCCcEEEEccchhh
Q 010133 278 ELRKLLMKT-----------------SSKSIIVIEDIDCS 300 (517)
Q Consensus 278 ~L~~lf~~~-----------------~~~sII~iDdID~~ 300 (517)
-=..||... ....+||||||..+
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~m 247 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEM 247 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccC
Confidence 223355421 24689999999876
No 232
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.52 E-value=1.2e-07 Score=81.68 Aligned_cols=61 Identities=25% Similarity=0.385 Sum_probs=39.5
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccChHHHHHHHHhccCCcEEEEccchhh
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNNSELRKLLMKTSSKSIIVIEDIDCS 300 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~~~~L~~lf~~~~~~sII~iDdID~~ 300 (517)
++||||||+|||+++..||..+.-.+-.-....+-....-.+.+.......++++||+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~~q~vvi~DD~~~~ 61 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQGQPVVIIDDFGQD 61 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccCCCcEEEEeecCcc
Confidence 5799999999999999998877532211111111011112345566667789999999874
No 233
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=2.5e-06 Score=96.64 Aligned_cols=92 Identities=21% Similarity=0.359 Sum_probs=59.8
Q ss_pred cccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccccC-----
Q 010133 204 TLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVHN----- 275 (517)
Q Consensus 204 tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~~----- 275 (517)
.|++.++....|-+.+...-.+ +... .+.--+||.||.|+|||-||+|+|.++ .-.++.+|+++...
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~g--l~~~---~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskli 637 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAG--LKDP---NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLI 637 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcc--cCCC---CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhcc
Confidence 4566666655555544443321 1111 233458999999999999999999998 55688999997321
Q ss_pred --------hHHHHHHHHhc--cCCcEEEEccchhh
Q 010133 276 --------NSELRKLLMKT--SSKSIIVIEDIDCS 300 (517)
Q Consensus 276 --------~~~L~~lf~~~--~~~sII~iDdID~~ 300 (517)
....-++.... .+.|||||||||.+
T Consensus 638 gsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 638 GSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred CCCcccccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 12233333333 35699999999975
No 234
>PF13173 AAA_14: AAA domain
Probab=98.50 E-value=6.8e-07 Score=79.32 Aligned_cols=63 Identities=22% Similarity=0.439 Sum_probs=48.4
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhC--CceEEEeeccccChH----HHHHHHHhc--cCCcEEEEccchhh
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLG--YDIYDLELTEVHNNS----ELRKLLMKT--SSKSIIVIEDIDCS 300 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~--~~i~~l~l~~~~~~~----~L~~lf~~~--~~~sII~iDdID~~ 300 (517)
+.++|+||.|||||++++.+|..+. .++..+++.+..... ++.+.+.+. +.+.+||||||+.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhh
Confidence 4689999999999999999999886 888889888763321 133444443 36799999999975
No 235
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.50 E-value=2e-06 Score=83.01 Aligned_cols=157 Identities=27% Similarity=0.331 Sum_probs=78.7
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCC----ceEEEeecccc---------------------------------------
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGY----DIYDLELTEVH--------------------------------------- 274 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~----~i~~l~l~~~~--------------------------------------- 274 (517)
+.++||||.|+|||+|++.+.+.+.- .+|...+....
T Consensus 21 ~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 100 (234)
T PF01637_consen 21 QHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLSE 100 (234)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-G
T ss_pred cEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcchh
Confidence 47999999999999999999998832 12211111110
Q ss_pred -ChHHHHHHHHh---ccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHH
Q 010133 275 -NNSELRKLLMK---TSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGL 350 (517)
Q Consensus 275 -~~~~L~~lf~~---~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 350 (517)
....+..++.. ...+.||+|||+|.+. . + .......+..|
T Consensus 101 ~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~-~-~----------------------------------~~~~~~~~~~l 144 (234)
T PF01637_consen 101 DSFSALERLLEKLKKKGKKVIIVIDEFQYLA-I-A----------------------------------SEEDKDFLKSL 144 (234)
T ss_dssp G-G--HHHHHHHHHHCHCCEEEEEETGGGGG-B-C----------------------------------TTTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCcEEEEEecHHHHh-h-c----------------------------------ccchHHHHHHH
Confidence 01112222222 2345999999999973 0 0 01134456667
Q ss_pred HHhhcCCcccCCCceEEEEEeCCCC------CCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCC--ChHhHH
Q 010133 351 LNFTDGLWSCCGSEKIFVFTTNHIE------KLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDL--EDETLK 422 (517)
Q Consensus 351 Ln~lDg~~s~~~~~~iiI~TTN~~e------~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~--~~~~~~ 422 (517)
.+.++...+. ....+|+++.... .-...+. ||+.. +.+++.+.++...+++..+... ..+ +...++
T Consensus 145 ~~~~~~~~~~--~~~~~v~~~S~~~~~~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~ 218 (234)
T PF01637_consen 145 RSLLDSLLSQ--QNVSIVITGSSDSLMEEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDIE 218 (234)
T ss_dssp HHHHHH------TTEEEEEEESSHHHHHHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC-------HHHHH
T ss_pred HHHHhhcccc--CCceEEEECCchHHHHHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHH
Confidence 7777764332 2344444443211 1122333 48877 9999999999999988865433 222 455555
Q ss_pred HHHHhhCCCCCCHHHHH
Q 010133 423 ELEDVVGKAEMTPADIS 439 (517)
Q Consensus 423 ~i~~l~~~~~~spadi~ 439 (517)
.+-.+ .|=.|..|+
T Consensus 219 ~i~~~---~gG~P~~l~ 232 (234)
T PF01637_consen 219 EIYSL---TGGNPRYLQ 232 (234)
T ss_dssp HHHHH---HTT-HHHHH
T ss_pred HHHHH---hCCCHHHHh
Confidence 55554 233455444
No 236
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.48 E-value=1.8e-06 Score=91.04 Aligned_cols=250 Identities=15% Similarity=0.147 Sum_probs=142.1
Q ss_pred CCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHH---hCCceEEEeeccccC
Q 010133 199 PSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANY---LGYDIYDLELTEVHN 275 (517)
Q Consensus 199 p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~---l~~~i~~l~l~~~~~ 275 (517)
...+..+||.+....++++.++--..+. -.+||+|..||||..+|+||=.. -+.|++.+||..+-.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~Sd-----------~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAKSD-----------STVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhcCC-----------CeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 4467889999999999999998888764 37999999999999999999554 478999999999843
Q ss_pred hHHHHHHHH-------hc----------cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCC
Q 010133 276 NSELRKLLM-------KT----------SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGG 338 (517)
Q Consensus 276 ~~~L~~lf~-------~~----------~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (517)
+--=..||. .+ .....||+|||-.+-
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelP------------------------------------- 330 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELP------------------------------------- 330 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCCCeEechhhccCC-------------------------------------
Confidence 211133442 21 356899999998751
Q ss_pred CCCchhhHHHHHHHhhc-CCcccCCC------ceEEEEEeCCCCCCChhhhccCCceee---------EeccCC--CHHH
Q 010133 339 EDGNNSITLSGLLNFTD-GLWSCCGS------EKIFVFTTNHIEKLDPALLRSGRMDMH---------IFMSYC--SYPA 400 (517)
Q Consensus 339 ~~~~~~~~ls~LLn~lD-g~~s~~~~------~~iiI~TTN~~e~LD~ALlRpGR~d~~---------I~~~~p--~~e~ 400 (517)
-....-||..+. |--..-|+ .+-||++||+- |-. ..+-|+|-.- |++|+. ..++
T Consensus 331 -----L~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRD--L~~-~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~D 402 (550)
T COG3604 331 -----LALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRD--LEE-MVRDGEFRADLYYRLSVFPLELPPLRERPED 402 (550)
T ss_pred -----HHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccchh--HHH-HHHcCcchhhhhhcccccccCCCCcccCCcc
Confidence 122334555442 11111122 24588999862 222 2334554321 223333 3455
Q ss_pred HHHHHHHhc-------CCCCCCCChHhHHHHHHhhCCCCCCHHHHHHHHHHhc---------ccHHHHHHHHHHHHHHHH
Q 010133 401 LLILLKNYL-------GYEESDLEDETLKELEDVVGKAEMTPADISEVLIKNK---------RDKCKAVRELLETLKVKA 464 (517)
Q Consensus 401 ~~~l~~~~l-------~~~~~~~~~~~~~~i~~l~~~~~~spadi~~~l~~~~---------~~~~~al~~l~~~l~~~~ 464 (517)
+.-|++.|+ +.....++.+.++.+...-+..++ .++.+++.+.- .+. ..++.-...+....
T Consensus 403 IplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGNV--RELen~veRavlla~~~~~~~d~-~~l~~~~~~~~~~~ 479 (550)
T COG3604 403 IPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEWPGNV--RELENVVERAVLLAGRLTRRGDL-CTLELSLSALLWKT 479 (550)
T ss_pred HHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCCCCCcH--HHHHHHHHHHHHHhcccCCCcce-eehhhhhhcccccc
Confidence 666666654 333334555666665554333222 56665554320 111 11111111000000
Q ss_pred HhhhhcCCccccCCC------hhHHHHHHHhhcCCCCccchhhhhccCC
Q 010133 465 EKNVKHGGIIVKNSD------YEEEEQEKRALESPIEGSDIEDANNCEE 507 (517)
Q Consensus 465 ~~~~~~~~~~~~~~~------~~~~~~~~r~~~~~l~~~~~~~~~~~~~ 507 (517)
...........+..+ ....+.+++.|...|++.++++|++|+.
T Consensus 480 ~~~~~p~~~~~~~~p~~~~l~~~~~~~eR~~I~~aL~~~~~~~a~AAr~ 528 (550)
T COG3604 480 LPAPEPSALPEPALPGEHTLREATEEFERQLIIAALEETNGNWAGAARR 528 (550)
T ss_pred CCCCCccccCCccCCCcccchhhhHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 000000001122222 3377889999999999999999997653
No 237
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.48 E-value=5.2e-07 Score=97.53 Aligned_cols=119 Identities=20% Similarity=0.276 Sum_probs=77.2
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCce--EEEeeccccC---------------------hHHHHHHHH----------
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDI--YDLELTEVHN---------------------NSELRKLLM---------- 284 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i--~~l~l~~~~~---------------------~~~L~~lf~---------- 284 (517)
..++|+||||||||+|++.|++.+.-.- ..++++.+.+ ......++.
T Consensus 211 ~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l 290 (506)
T PRK09862 211 HNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEI 290 (506)
T ss_pred cEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehhhHh
Confidence 4699999999999999999998763110 1122222110 011122221
Q ss_pred hccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhc-CCc--cc-
Q 010133 285 KTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTD-GLW--SC- 360 (517)
Q Consensus 285 ~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lD-g~~--s~- 360 (517)
......+||||||+.+ ...++..|++.|+ |.. +.
T Consensus 291 ~~A~gGvLfLDEi~e~------------------------------------------~~~~~~~L~~~LE~g~v~I~r~ 328 (506)
T PRK09862 291 SLAHNGVLFLDELPEF------------------------------------------ERRTLDALREPIESGQIHLSRT 328 (506)
T ss_pred hhccCCEEecCCchhC------------------------------------------CHHHHHHHHHHHHcCcEEEecC
Confidence 1235689999999875 3456777887773 322 11
Q ss_pred -----CCCceEEEEEeCCCC---------------------CCChhhhccCCceeeEeccCCCHHH
Q 010133 361 -----CGSEKIFVFTTNHIE---------------------KLDPALLRSGRMDMHIFMSYCSYPA 400 (517)
Q Consensus 361 -----~~~~~iiI~TTN~~e---------------------~LD~ALlRpGR~d~~I~~~~p~~e~ 400 (517)
...+..+|+|+|... +|..+|+. |||.+|.+++++.+.
T Consensus 329 g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~ 392 (506)
T PRK09862 329 RAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGI 392 (506)
T ss_pred CcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHH
Confidence 123467889998653 57789999 999999999998773
No 238
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.42 E-value=1.5e-06 Score=98.42 Aligned_cols=126 Identities=17% Similarity=0.236 Sum_probs=78.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC-------CceEEEeeccccC-hHHH-HHH-H----HhccCCcEEEEccchhhhccc
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG-------YDIYDLELTEVHN-NSEL-RKL-L----MKTSSKSIIVIEDIDCSISLS 304 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~-------~~i~~l~l~~~~~-~~~L-~~l-f----~~~~~~sII~iDdID~~~~~~ 304 (517)
.+||.|+||||||.+++++++... .++..++|+.... .... ... + .......+++|||||.+
T Consensus 494 hVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkm---- 569 (915)
T PTZ00111 494 NVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKC---- 569 (915)
T ss_pred eEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhC----
Confidence 699999999999999999988653 3444444443211 0000 000 0 01234689999999986
Q ss_pred cccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcC---------CcccCCCceEEEEEeCCCC
Q 010133 305 NRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDG---------LWSCCGSEKIFVFTTNHIE 375 (517)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg---------~~s~~~~~~iiI~TTN~~e 375 (517)
.....+.|+..|+. +...-....-||+|+|..+
T Consensus 570 --------------------------------------s~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~ 611 (915)
T PTZ00111 570 --------------------------------------HNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPIN 611 (915)
T ss_pred --------------------------------------CHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcc
Confidence 22345566666642 2111123456888998752
Q ss_pred -------------CCChhhhccCCceeeE-eccCCCHHHHHHHHHHh
Q 010133 376 -------------KLDPALLRSGRMDMHI-FMSYCSYPALLILLKNY 408 (517)
Q Consensus 376 -------------~LD~ALlRpGR~d~~I-~~~~p~~e~~~~l~~~~ 408 (517)
.|+++|+. |||... .++.|+.+.=+.|+.+.
T Consensus 612 gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~hI 656 (915)
T PTZ00111 612 SRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISLSI 656 (915)
T ss_pred cccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHHHH
Confidence 36799999 999876 56778766655555443
No 239
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.41 E-value=7.7e-07 Score=78.55 Aligned_cols=63 Identities=22% Similarity=0.448 Sum_probs=43.8
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHh--------CCceEEEeeccccChHHHHHHH---------------------Hhc--
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYL--------GYDIYDLELTEVHNNSELRKLL---------------------MKT-- 286 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l--------~~~i~~l~l~~~~~~~~L~~lf---------------------~~~-- 286 (517)
+.++++||||+|||++++.++..+ +.+++.+++....+...+...+ ...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 468999999999999999999988 7888888887765433322221 111
Q ss_pred -cCCcEEEEccchhh
Q 010133 287 -SSKSIIVIEDIDCS 300 (517)
Q Consensus 287 -~~~sII~iDdID~~ 300 (517)
....+|+|||+|.+
T Consensus 85 ~~~~~~lviDe~~~l 99 (131)
T PF13401_consen 85 RRRVVLLVIDEADHL 99 (131)
T ss_dssp HCTEEEEEEETTHHH
T ss_pred hcCCeEEEEeChHhc
Confidence 12259999999996
No 240
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.40 E-value=5.7e-06 Score=87.99 Aligned_cols=73 Identities=33% Similarity=0.474 Sum_probs=54.1
Q ss_pred CCCceecccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEE
Q 010133 188 GHPWESVSFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYD 267 (517)
Q Consensus 188 ~~~w~~~~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~ 267 (517)
...| +....|++.++|+.......+|...+..+.... .++ ..|-+||+||+||||||.++.||.++|+.+..
T Consensus 69 ~elW--~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~---~~l---~~~iLLltGPsGcGKSTtvkvLskelg~~~~E 140 (634)
T KOG1970|consen 69 FELW--VEKYKPRTLEELAVHKKKISEVKQWLKQVAEFT---PKL---GSRILLLTGPSGCGKSTTVKVLSKELGYQLIE 140 (634)
T ss_pred cchh--HHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhc---cCC---CceEEEEeCCCCCCchhHHHHHHHhhCceeee
Confidence 4478 667899999999999888666655555222111 111 12458899999999999999999999998876
Q ss_pred E
Q 010133 268 L 268 (517)
Q Consensus 268 l 268 (517)
-
T Consensus 141 w 141 (634)
T KOG1970|consen 141 W 141 (634)
T ss_pred e
Confidence 4
No 241
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.38 E-value=1.6e-05 Score=88.46 Aligned_cols=51 Identities=35% Similarity=0.397 Sum_probs=38.7
Q ss_pred CCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCc
Q 010133 199 PSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYD 264 (517)
Q Consensus 199 p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~ 264 (517)
..-++.++|.++.++.+...+. . +++++|+||||||||++++++|+.++.+
T Consensus 14 ~~~~~~viG~~~a~~~l~~a~~----~-----------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 14 ERLIDQVIGQEEAVEIIKKAAK----Q-----------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhhHhhccCHHHHHHHHHHHHH----c-----------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 3568888998877665433222 2 2489999999999999999999999654
No 242
>PF05729 NACHT: NACHT domain
Probab=98.37 E-value=2.9e-06 Score=77.50 Aligned_cols=63 Identities=22% Similarity=0.498 Sum_probs=41.1
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCC---------ceEEEeeccccChH---HHHHHH------------------Hhcc
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGY---------DIYDLELTEVHNNS---ELRKLL------------------MKTS 287 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~---------~i~~l~l~~~~~~~---~L~~lf------------------~~~~ 287 (517)
|-++|+|+||+|||++++.++..+.. -++.+.+....... .+..++ ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 35899999999999999999887611 12334444442211 232222 1234
Q ss_pred CCcEEEEccchhh
Q 010133 288 SKSIIVIEDIDCS 300 (517)
Q Consensus 288 ~~sII~iDdID~~ 300 (517)
.+.+|+||.+|.+
T Consensus 81 ~~~llilDglDE~ 93 (166)
T PF05729_consen 81 KRVLLILDGLDEL 93 (166)
T ss_pred CceEEEEechHhc
Confidence 6789999999987
No 243
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.34 E-value=3.9e-05 Score=78.03 Aligned_cols=121 Identities=20% Similarity=0.265 Sum_probs=88.8
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHhCC-------------ceEEEe--eccccChHHHHHHHHhcc-------CCcEEEE
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYLGY-------------DIYDLE--LTEVHNNSELRKLLMKTS-------SKSIIVI 294 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l~~-------------~i~~l~--l~~~~~~~~L~~lf~~~~-------~~sII~i 294 (517)
...|||||+.|+||+.++.++|+.+.. ++..++ ...+ .-+.++.+....+ .+-|++|
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i-~vd~Ir~l~~~~~~~~~~~~~~KvvII 96 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDL-SKSEFLSAINKLYFSSFVQSQKKILII 96 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcC-CHHHHHHHHHHhccCCcccCCceEEEE
Confidence 347999999999999999999998721 233343 2222 3456666655442 5579999
Q ss_pred ccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCC
Q 010133 295 EDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHI 374 (517)
Q Consensus 295 DdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~ 374 (517)
|++|.+ .....+.||..|+.. +...++|++|+.+
T Consensus 97 ~~~e~m------------------------------------------~~~a~NaLLK~LEEP----p~~t~~il~~~~~ 130 (299)
T PRK07132 97 KNIEKT------------------------------------------SNSLLNALLKTIEEP----PKDTYFLLTTKNI 130 (299)
T ss_pred eccccc------------------------------------------CHHHHHHHHHHhhCC----CCCeEEEEEeCCh
Confidence 999875 234567888888875 3457888888888
Q ss_pred CCCChhhhccCCceeeEeccCCCHHHHHHHHHH
Q 010133 375 EKLDPALLRSGRMDMHIFMSYCSYPALLILLKN 407 (517)
Q Consensus 375 e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~ 407 (517)
++|-|+++. |. ..++|.+++.++....+..
T Consensus 131 ~kll~TI~S--Rc-~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 131 NKVLPTIVS--RC-QVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred HhChHHHHh--Ce-EEEECCCCCHHHHHHHHHH
Confidence 999999987 66 6799999998888766554
No 244
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.29 E-value=2.3e-05 Score=78.80 Aligned_cols=88 Identities=11% Similarity=0.184 Sum_probs=57.3
Q ss_pred CChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---------CCceEEEeeccccChH
Q 010133 207 IDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---------GYDIYDLELTEVHNNS 277 (517)
Q Consensus 207 ~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---------~~~i~~l~l~~~~~~~ 277 (517)
+.+.. +++++.+.+.+..+.. .-..++||+|++|.|||++++..+... ..|++.+.+..-.+..
T Consensus 38 gY~~A-~~~L~~L~~Ll~~P~~------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~ 110 (302)
T PF05621_consen 38 GYPRA-KEALDRLEELLEYPKR------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDER 110 (302)
T ss_pred cCHHH-HHHHHHHHHHHhCCcc------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChH
Confidence 44444 4566778887776521 112489999999999999999987644 3577777766554443
Q ss_pred HHHHH-HHh-----------------------ccCCcEEEEccchhhh
Q 010133 278 ELRKL-LMK-----------------------TSSKSIIVIEDIDCSI 301 (517)
Q Consensus 278 ~L~~l-f~~-----------------------~~~~sII~iDdID~~~ 301 (517)
.+-.. +.. .-+.-+|+||||+.++
T Consensus 111 ~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lL 158 (302)
T PF05621_consen 111 RFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLL 158 (302)
T ss_pred HHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHh
Confidence 32221 111 1245699999999975
No 245
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.24 E-value=4.8e-05 Score=83.19 Aligned_cols=171 Identities=19% Similarity=0.274 Sum_probs=101.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh----------CCceEEEeeccccChHH----------------------HHHHHH--
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL----------GYDIYDLELTEVHNNSE----------------------LRKLLM-- 284 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l----------~~~i~~l~l~~~~~~~~----------------------L~~lf~-- 284 (517)
.+.+.|-||||||.++..+-..| .++++.+|.-.+.+..+ |..-|.
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 57889999999999999998866 45666676655543322 233333
Q ss_pred -hccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCC
Q 010133 285 -KTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGS 363 (517)
Q Consensus 285 -~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~ 363 (517)
....++||+|||+|.++. + + ..-|-|++|-... .+.
T Consensus 504 k~~~~~~VvLiDElD~Lvt---r------------------------------------~---QdVlYn~fdWpt~-~~s 540 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVT---R------------------------------------S---QDVLYNIFDWPTL-KNS 540 (767)
T ss_pred CCCCCCEEEEeccHHHHhc---c------------------------------------c---HHHHHHHhcCCcC-CCC
Confidence 113679999999999851 1 1 2234455554432 233
Q ss_pred ceEEEEEeCCCCCCChhhhcc---CCce-eeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhhCCCCCCHHHHH
Q 010133 364 EKIFVFTTNHIEKLDPALLRS---GRMD-MHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDVVGKAEMTPADIS 439 (517)
Q Consensus 364 ~~iiI~TTN~~e~LD~ALlRp---GR~d-~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~~~~~~spadi~ 439 (517)
..+||+..|..+ |++.++-+ .|++ ..|.|.+.+.+|..+|+..-|.... .++....+.+++.+
T Consensus 541 KLvvi~IaNTmd-lPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~-~f~~~aielvarkV----------- 607 (767)
T KOG1514|consen 541 KLVVIAIANTMD-LPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLD-AFENKAIELVARKV----------- 607 (767)
T ss_pred ceEEEEeccccc-CHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchh-hcchhHHHHHHHHH-----------
Confidence 455666666553 45555521 2444 4578889999999999988775431 22223333333321
Q ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHhhh
Q 010133 440 EVLIKNKRDKCKAVRELLETLKVKAEKNV 468 (517)
Q Consensus 440 ~~l~~~~~~~~~al~~l~~~l~~~~~~~~ 468 (517)
.....|+..|++-...+.+.+.+...
T Consensus 608 ---AavSGDaRraldic~RA~Eia~~~~~ 633 (767)
T KOG1514|consen 608 ---AAVSGDARRALDICRRAAEIAEERNV 633 (767)
T ss_pred ---HhccccHHHHHHHHHHHHHHhhhhcc
Confidence 12235666777655556555554444
No 246
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.22 E-value=4.1e-05 Score=76.95 Aligned_cols=124 Identities=20% Similarity=0.216 Sum_probs=66.8
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHH--hC--Cc-eEEEeeccccChHH-HHHH-----------------------HHh--
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANY--LG--YD-IYDLELTEVHNNSE-LRKL-----------------------LMK-- 285 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~--l~--~~-i~~l~l~~~~~~~~-L~~l-----------------------f~~-- 285 (517)
.+-+.|+|++|+|||+||..+++. .. ++ ++.++++...+... +..+ +.+
T Consensus 19 ~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L 98 (287)
T PF00931_consen 19 VRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELL 98 (287)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHH
T ss_pred eEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhh
Confidence 456899999999999999999977 32 32 34455554322111 1111 111
Q ss_pred ccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCce
Q 010133 286 TSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEK 365 (517)
Q Consensus 286 ~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~ 365 (517)
...+++|||||++... .+..+...+-.. ..+.
T Consensus 99 ~~~~~LlVlDdv~~~~--------------------------------------------~~~~l~~~~~~~----~~~~ 130 (287)
T PF00931_consen 99 KDKRCLLVLDDVWDEE--------------------------------------------DLEELREPLPSF----SSGS 130 (287)
T ss_dssp CCTSEEEEEEEE-SHH--------------------------------------------HH-------HCH----HSS-
T ss_pred ccccceeeeeeecccc--------------------------------------------cccccccccccc----cccc
Confidence 1348999999998641 122222221111 1123
Q ss_pred EEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCC
Q 010133 366 IFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYE 412 (517)
Q Consensus 366 iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~ 412 (517)
-||.||...... ..+- .-+..++++..+.++-..++..+....
T Consensus 131 kilvTTR~~~v~-~~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~ 173 (287)
T PF00931_consen 131 KILVTTRDRSVA-GSLG---GTDKVIELEPLSEEEALELFKKRAGRK 173 (287)
T ss_dssp EEEEEESCGGGG-TTHH---SCEEEEECSS--HHHHHHHHHHHHTSH
T ss_pred cccccccccccc-cccc---ccccccccccccccccccccccccccc
Confidence 455677543221 1111 125789999999999999999886543
No 247
>PHA02774 E1; Provisional
Probab=98.22 E-value=1.2e-05 Score=87.02 Aligned_cols=58 Identities=24% Similarity=0.434 Sum_probs=43.6
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEE-EeeccccChHHHHHHHHhccCCcEEEEccc
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYD-LELTEVHNNSELRKLLMKTSSKSIIVIEDI 297 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~-l~l~~~~~~~~L~~lf~~~~~~sII~iDdI 297 (517)
|+|.+++++||||||||||+|+.+|++.++..++. +|..+ .-.|......-|++|||+
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s-------~FwLqpl~d~ki~vlDD~ 488 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS-------HFWLQPLADAKIALLDDA 488 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc-------ccccchhccCCEEEEecC
Confidence 57778899999999999999999999999766644 55321 111333445579999999
No 248
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.21 E-value=5.6e-05 Score=90.55 Aligned_cols=58 Identities=16% Similarity=0.212 Sum_probs=41.2
Q ss_pred ccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC
Q 010133 195 SFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY 263 (517)
Q Consensus 195 ~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~ 263 (517)
...++..++.++|.+...+++...+ . .+....+-+-++||+|+||||||+++++.+..
T Consensus 176 ~~~~~~~~~~~vG~~~~l~~l~~lL----~-------l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~ 233 (1153)
T PLN03210 176 NLTPSNDFEDFVGIEDHIAKMSSLL----H-------LESEEVRMVGIWGSSGIGKTTIARALFSRLSR 233 (1153)
T ss_pred ccccCcccccccchHHHHHHHHHHH----c-------cccCceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence 3445667888898877766654433 2 12223456889999999999999999888743
No 249
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.21 E-value=2.7e-05 Score=78.51 Aligned_cols=111 Identities=16% Similarity=0.231 Sum_probs=78.5
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHhCC----------------ceEEEeecc---ccChHHHHHHHHhc---c---CCcE
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYLGY----------------DIYDLELTE---VHNNSELRKLLMKT---S---SKSI 291 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l~~----------------~i~~l~l~~---~~~~~~L~~lf~~~---~---~~sI 291 (517)
+..|||+||+|+||+.+|.++|..+-. +++.+.... .-+-+.++.+.... + ..-|
T Consensus 19 ~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~kv 98 (290)
T PRK05917 19 PSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYKI 98 (290)
T ss_pred CeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCceE
Confidence 347999999999999999999988743 233332111 11334455554433 2 3458
Q ss_pred EEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEe
Q 010133 292 IVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTT 371 (517)
Q Consensus 292 I~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TT 371 (517)
++|+++|.+ .....+.||..|+.- ....++|..|
T Consensus 99 ~ii~~ad~m------------------------------------------t~~AaNaLLK~LEEP----p~~~~fiL~~ 132 (290)
T PRK05917 99 YIIHEADRM------------------------------------------TLDAISAFLKVLEDP----PQHGVIILTS 132 (290)
T ss_pred EEEechhhc------------------------------------------CHHHHHHHHHHhhcC----CCCeEEEEEe
Confidence 899999986 344678899988874 3558899999
Q ss_pred CCCCCCChhhhccCCceeeEeccCC
Q 010133 372 NHIEKLDPALLRSGRMDMHIFMSYC 396 (517)
Q Consensus 372 N~~e~LD~ALlRpGR~d~~I~~~~p 396 (517)
+.++.|.|.++. |+ ..+.|+++
T Consensus 133 ~~~~~ll~TI~S--Rc-q~~~~~~~ 154 (290)
T PRK05917 133 AKPQRLPPTIRS--RS-LSIHIPME 154 (290)
T ss_pred CChhhCcHHHHh--cc-eEEEccch
Confidence 999999999998 77 56667654
No 250
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.20 E-value=9.8e-05 Score=73.09 Aligned_cols=112 Identities=17% Similarity=0.162 Sum_probs=77.0
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHHHhCC----------------------ceEEEeecc-ccChHHHHHHHHh---cc--
Q 010133 236 WKRGYLLYGPPGTGKSSMIAAMANYLGY----------------------DIYDLELTE-VHNNSELRKLLMK---TS-- 287 (517)
Q Consensus 236 ~~rg~LL~GpPGTGKTsla~alA~~l~~----------------------~i~~l~l~~-~~~~~~L~~lf~~---~~-- 287 (517)
.+..|||+||+|+||..+|.++|..+-. +++.+.-.. .-.-++++.+... .+
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e 85 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVE 85 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchh
Confidence 3558999999999999999999988732 222221100 0123344444332 12
Q ss_pred --CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCce
Q 010133 288 --SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEK 365 (517)
Q Consensus 288 --~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~ 365 (517)
..-|++|+++|.+ .....+.||..++.- ....
T Consensus 86 ~~~~KV~II~~ae~m------------------------------------------~~~AaNaLLK~LEEP----p~~t 119 (261)
T PRK05818 86 SNGKKIYIIYGIEKL------------------------------------------NKQSANSLLKLIEEP----PKNT 119 (261)
T ss_pred cCCCEEEEeccHhhh------------------------------------------CHHHHHHHHHhhcCC----CCCe
Confidence 3468889998886 345678899988874 3558
Q ss_pred EEEEEeCCCCCCChhhhccCCceeeEeccCC
Q 010133 366 IFVFTTNHIEKLDPALLRSGRMDMHIFMSYC 396 (517)
Q Consensus 366 iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p 396 (517)
++|++|+.++.+-|.++. |. ..+.++.+
T Consensus 120 ~fiLit~~~~~lLpTI~S--RC-q~~~~~~~ 147 (261)
T PRK05818 120 YGIFTTRNENNILNTILS--RC-VQYVVLSK 147 (261)
T ss_pred EEEEEECChHhCchHhhh--he-eeeecCCh
Confidence 999999999999999998 87 34566655
No 251
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.17 E-value=4.2e-06 Score=87.30 Aligned_cols=97 Identities=18% Similarity=0.305 Sum_probs=60.2
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHhCCc-eEEEeeccc-----------c-ChHHHHHHHHhccCCc-EEEEccch
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYLGYD-IYDLELTEV-----------H-NNSELRKLLMKTSSKS-IIVIEDID 298 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~-i~~l~l~~~-----------~-~~~~L~~lf~~~~~~s-II~iDdID 298 (517)
..+.++|+.||||+|+|||+|.-...+.+... --.+-...+ . ....+..+.......+ +|+|||+.
T Consensus 58 ~~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~~~lLcfDEF~ 137 (362)
T PF03969_consen 58 PPPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKESRLLCFDEFQ 137 (362)
T ss_pred cCCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCEEEEeeee
Confidence 45678999999999999999999988776431 011111111 0 1112333333333444 99999998
Q ss_pred hhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCC
Q 010133 299 CSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHI 374 (517)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~ 374 (517)
.- +-.....+..|+..+=. .++++|+|+|.+
T Consensus 138 V~---------------------------------------DiaDAmil~rLf~~l~~------~gvvlVaTSN~~ 168 (362)
T PF03969_consen 138 VT---------------------------------------DIADAMILKRLFEALFK------RGVVLVATSNRP 168 (362)
T ss_pred cc---------------------------------------chhHHHHHHHHHHHHHH------CCCEEEecCCCC
Confidence 62 12235667777776522 358999999964
No 252
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.15 E-value=3.7e-05 Score=83.57 Aligned_cols=158 Identities=22% Similarity=0.264 Sum_probs=90.0
Q ss_pred cccCChHHHHHHHHHHHHHHhchhHHHhhC-CCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecc--------cc
Q 010133 204 TLAIDPEKKIEIMEDLKDFANGMSFYQKTG-RAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTE--------VH 274 (517)
Q Consensus 204 tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G-~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~--------~~ 274 (517)
.|.+.++.|+.++- ..|=-...-+...| ..---++||+|.||||||.|.+.+++-+-..+|.---.+ +.
T Consensus 430 sIye~edvKkglLL--qLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLL--QLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHH--HHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 35566666666632 22222223333333 111236999999999999999999998876666421111 11
Q ss_pred ChHHHHHHHHhc-----cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHH
Q 010133 275 NNSELRKLLMKT-----SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSG 349 (517)
Q Consensus 275 ~~~~L~~lf~~~-----~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 349 (517)
.+.+-+++..+. ....|-+|||+|.+- ..+-+.
T Consensus 508 rd~dtkqlVLesGALVLSD~GiCCIDEFDKM~------------------------------------------dStrSv 545 (804)
T KOG0478|consen 508 KDPDTRQLVLESGALVLSDNGICCIDEFDKMS------------------------------------------DSTRSV 545 (804)
T ss_pred ecCccceeeeecCcEEEcCCceEEchhhhhhh------------------------------------------HHHHHH
Confidence 111223333332 467899999999871 123344
Q ss_pred HHHhhc---------CCcccCCCceEEEEEeCCCC-------------CCChhhhccCCceeeEe-ccCCCHHHHHHHHH
Q 010133 350 LLNFTD---------GLWSCCGSEKIFVFTTNHIE-------------KLDPALLRSGRMDMHIF-MSYCSYPALLILLK 406 (517)
Q Consensus 350 LLn~lD---------g~~s~~~~~~iiI~TTN~~e-------------~LD~ALlRpGR~d~~I~-~~~p~~e~~~~l~~ 406 (517)
|+..|+ |+-.+-+..--|+++.|..+ .|+|.|++ |||.... +..|+...=+.|..
T Consensus 546 LhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~~Dr~La~ 623 (804)
T KOG0478|consen 546 LHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDERSDRRLAD 623 (804)
T ss_pred HHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchhHHHHHHH
Confidence 444443 33222222234778888432 36899999 9998774 56676653344444
Q ss_pred H
Q 010133 407 N 407 (517)
Q Consensus 407 ~ 407 (517)
+
T Consensus 624 H 624 (804)
T KOG0478|consen 624 H 624 (804)
T ss_pred H
Confidence 4
No 253
>PHA00729 NTP-binding motif containing protein
Probab=98.15 E-value=3.7e-06 Score=81.59 Aligned_cols=59 Identities=15% Similarity=0.375 Sum_probs=38.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEE----------------EeeccccChHHHHHHHHhccCCcEEEEccchh
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYD----------------LELTEVHNNSELRKLLMKTSSKSIIVIEDIDC 299 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~----------------l~l~~~~~~~~L~~lf~~~~~~sII~iDdID~ 299 (517)
.++|+|+||||||+||.+||..++..+.. +++..+ ...|...+.......+|+|||+-.
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~L--l~~L~~a~~~~~~~dlLIIDd~G~ 93 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDA--LEKIQDAIDNDYRIPLIIFDDAGI 93 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHH--HHHHHHHHhcCCCCCEEEEeCCch
Confidence 69999999999999999999988643332 222222 122333333322346899999754
No 254
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.14 E-value=3.7e-05 Score=84.95 Aligned_cols=119 Identities=18% Similarity=0.135 Sum_probs=83.6
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCC--ceEEEeeccc----cChHHHHHHHHh-----------ccCCcEEEEccchhh
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGY--DIYDLELTEV----HNNSELRKLLMK-----------TSSKSIIVIEDIDCS 300 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~--~i~~l~l~~~----~~~~~L~~lf~~-----------~~~~sII~iDdID~~ 300 (517)
.|+||-|++|||||+++++++..+.. +|..+.++.- ...-+|...+.. ...+.||||||+..+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~ 105 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERL 105 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccC
Confidence 48999999999999999999999854 6665544331 122233333322 124589999999875
Q ss_pred hccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhc---------CCcccCCCceEEEEEe
Q 010133 301 ISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTD---------GLWSCCGSEKIFVFTT 371 (517)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lD---------g~~s~~~~~~iiI~TT 371 (517)
...+++.|+..|+ |..-......++|+|-
T Consensus 106 ------------------------------------------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~ 143 (584)
T PRK13406 106 ------------------------------------------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALD 143 (584)
T ss_pred ------------------------------------------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecC
Confidence 4568899999985 3222223345677764
Q ss_pred CCC---CCCChhhhccCCceeeEeccCCCHHH
Q 010133 372 NHI---EKLDPALLRSGRMDMHIFMSYCSYPA 400 (517)
Q Consensus 372 N~~---e~LD~ALlRpGR~d~~I~~~~p~~e~ 400 (517)
|.. +.|.++|+- ||+++|.+++++..+
T Consensus 144 ~~~~~~~~L~~~lLD--Rf~l~v~v~~~~~~~ 173 (584)
T PRK13406 144 EGAEEDERAPAALAD--RLAFHLDLDGLALRD 173 (584)
T ss_pred CChhcccCCCHHhHh--heEEEEEcCCCChHH
Confidence 433 468999999 999999999997654
No 255
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=4.5e-06 Score=87.93 Aligned_cols=48 Identities=27% Similarity=0.480 Sum_probs=37.1
Q ss_pred CCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh
Q 010133 199 PSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 199 p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l 261 (517)
...|.+|.|.+..|..+.-.. .| ..++||+||||||||++|+-|..-|
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAA------------AG---gHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAA------------AG---GHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHH------------hc---CCcEEEecCCCCchHHhhhhhcccC
Confidence 457999999999988763311 11 2489999999999999999886544
No 256
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.10 E-value=1.8e-05 Score=90.26 Aligned_cols=195 Identities=22% Similarity=0.293 Sum_probs=123.7
Q ss_pred ccCCCCCcccccCChHHHHHHHHHHHHHHhc-hhHHHhhCCCC-Cc-ceEEeCCCCCcHHHHHHHHHHHhCCceEEEeec
Q 010133 195 SFKHPSTFDTLAIDPEKKIEIMEDLKDFANG-MSFYQKTGRAW-KR-GYLLYGPPGTGKSSMIAAMANYLGYDIYDLELT 271 (517)
Q Consensus 195 ~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~-~~~y~~~G~~~-~r-g~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~ 271 (517)
....|.....+.+....-..+.+.+..+-+. +.-|..-+.-. .+ ..|++||||.|||+.+.++|.++|+.++..|.+
T Consensus 312 ~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas 391 (871)
T KOG1968|consen 312 EKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNAS 391 (871)
T ss_pred cccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCcc
Confidence 3455666677777777666666666666222 12333222111 12 369999999999999999999999999999999
Q ss_pred cccChHHHHHHHHhc--------------------cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCccccc
Q 010133 272 EVHNNSELRKLLMKT--------------------SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRC 331 (517)
Q Consensus 272 ~~~~~~~L~~lf~~~--------------------~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (517)
...+...+..-+..+ ....||++||+|-++. .
T Consensus 392 ~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~--~-------------------------- 443 (871)
T KOG1968|consen 392 DVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG--E-------------------------- 443 (871)
T ss_pred ccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc--h--------------------------
Confidence 887665554443321 1134999999997641 0
Q ss_pred CCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCCh-hhhccCCceeeEeccCCCHHHHHHHHHHhcC
Q 010133 332 GSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDP-ALLRSGRMDMHIFMSYCSYPALLILLKNYLG 410 (517)
Q Consensus 332 ~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~-ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~ 410 (517)
+...-..+++|.+. ..+=||+|+|....... +|. |-+.-|+|+.|+.+.+..-+..++.
T Consensus 444 --------dRg~v~~l~~l~~k---------s~~Piv~~cndr~~p~sr~~~---~~~~~l~f~kP~~~~i~~ri~si~~ 503 (871)
T KOG1968|consen 444 --------DRGGVSKLSSLCKK---------SSRPLVCTCNDRNLPKSRALS---RACSDLRFSKPSSELIRSRIMSICK 503 (871)
T ss_pred --------hhhhHHHHHHHHHh---------ccCCeEEEecCCCCccccchh---hhcceeeecCCcHHHHHhhhhhhhc
Confidence 01111223334331 12568889987776655 444 4446789999999998877777776
Q ss_pred CCCCCCChHhHHHHHHhhCCCCCCHHHHHHHHH
Q 010133 411 YEESDLEDETLKELEDVVGKAEMTPADISEVLI 443 (517)
Q Consensus 411 ~~~~~~~~~~~~~i~~l~~~~~~spadi~~~l~ 443 (517)
.+...+++..++++..+ +.+||.+.++
T Consensus 504 se~~ki~~~~l~~~s~~------~~~DiR~~i~ 530 (871)
T KOG1968|consen 504 SEGIKISDDVLEEISKL------SGGDIRQIIM 530 (871)
T ss_pred ccceecCcHHHHHHHHh------cccCHHHHHH
Confidence 66555556666665443 3455555444
No 257
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.04 E-value=4.9e-05 Score=88.76 Aligned_cols=124 Identities=21% Similarity=0.311 Sum_probs=87.1
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccChHHHHHHHH--------------------hccCCcEEEEccc
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNNSELRKLLM--------------------KTSSKSIIVIEDI 297 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~~~~L~~lf~--------------------~~~~~sII~iDdI 297 (517)
+++||-|.||.|||||+.|+|+..|-..+.+|+++- .+|..+|. ......-|++|||
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQ---TdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEi 1620 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQ---TDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEI 1620 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeecccc---chHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehh
Confidence 579999999999999999999999999999999875 33555553 2345678999999
Q ss_pred hhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhc-----------CCcccCCCceE
Q 010133 298 DCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTD-----------GLWSCCGSEKI 366 (517)
Q Consensus 298 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lD-----------g~~s~~~~~~i 366 (517)
.-. ++..+.||=..+| ...++ ..+..
T Consensus 1621 NLa------------------------------------------SQSVlEGLNacLDhR~eayIPEld~~f~~-Hpnfr 1657 (4600)
T COG5271 1621 NLA------------------------------------------SQSVLEGLNACLDHRREAYIPELDKTFDV-HPNFR 1657 (4600)
T ss_pred hhh------------------------------------------HHHHHHHHHHHHhhccccccccccceeec-cCCee
Confidence 753 3445666655554 22232 23344
Q ss_pred EEEEeCCC------CCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcC
Q 010133 367 FVFTTNHI------EKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLG 410 (517)
Q Consensus 367 iI~TTN~~------e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~ 410 (517)
|++|-|.. ..|+..++. || ..|.|.-.+.++...|+...+.
T Consensus 1658 VFAaqNPq~qggGRKgLPkSF~n--RF-svV~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1658 VFAAQNPQDQGGGRKGLPKSFLN--RF-SVVKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred eeeecCchhcCCCcccCCHHHhh--hh-heEEecccccchHHHHHHhhCC
Confidence 55555533 358999999 99 5678877777776666665443
No 258
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=0.00018 Score=72.66 Aligned_cols=118 Identities=22% Similarity=0.268 Sum_probs=81.4
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHhCC------------------------ceEEEeecc-ccChHHHHHHHHhc---c-
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYLGY------------------------DIYDLELTE-VHNNSELRKLLMKT---S- 287 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l~~------------------------~i~~l~l~~-~~~~~~L~~lf~~~---~- 287 (517)
+.+|||+|| +||+++|.++|..+.. +++.+.-.. .-.-+.++.+.... +
T Consensus 24 ~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~p~ 101 (290)
T PRK07276 24 NHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQSGY 101 (290)
T ss_pred ceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhCcc
Confidence 348999996 6899999999987732 222222110 01234566654433 2
Q ss_pred --CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCce
Q 010133 288 --SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEK 365 (517)
Q Consensus 288 --~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~ 365 (517)
..-|++||++|.+ .....+.||..++.- +...
T Consensus 102 ~~~~kV~II~~ad~m------------------------------------------~~~AaNaLLKtLEEP----p~~t 135 (290)
T PRK07276 102 EGKQQVFIIKDADKM------------------------------------------HVNAANSLLKVIEEP----QSEI 135 (290)
T ss_pred cCCcEEEEeehhhhc------------------------------------------CHHHHHHHHHHhcCC----CCCe
Confidence 4579999999986 345678899998874 3457
Q ss_pred EEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHH
Q 010133 366 IFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLK 406 (517)
Q Consensus 366 iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~ 406 (517)
++|.+|+.++.|-|.++. |. .+|.|+. +.++...++.
T Consensus 136 ~~iL~t~~~~~lLpTI~S--Rc-q~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 136 YIFLLTNDENKVLPTIKS--RT-QIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred EEEEEECChhhCchHHHH--cc-eeeeCCC-cHHHHHHHHH
Confidence 899999999999999998 88 6788866 5555555544
No 259
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.99 E-value=3.1e-05 Score=74.44 Aligned_cols=41 Identities=24% Similarity=0.433 Sum_probs=33.8
Q ss_pred hCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeecc
Q 010133 232 TGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTE 272 (517)
Q Consensus 232 ~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~ 272 (517)
-|+|...-++++||||||||+|+..+|... +..++.++...
T Consensus 7 GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 7 GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 378888889999999999999999887544 66788887764
No 260
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.98 E-value=5.4e-06 Score=72.23 Aligned_cols=30 Identities=33% Similarity=0.841 Sum_probs=26.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCCceEEEe
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGYDIYDLE 269 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~~i~~l~ 269 (517)
|++.|||||||||+++.||..+|++++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 789999999999999999999987766544
No 261
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.93 E-value=7.2e-05 Score=67.72 Aligned_cols=32 Identities=25% Similarity=0.616 Sum_probs=26.1
Q ss_pred eEEeCCCCCcHHHHHHHHHHHh---CCceEEEeec
Q 010133 240 YLLYGPPGTGKSSMIAAMANYL---GYDIYDLELT 271 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~ 271 (517)
++|+||||||||+++.+++..+ +.+++.+++.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e 36 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 6899999999999999998887 4566665543
No 262
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.92 E-value=0.00051 Score=72.30 Aligned_cols=159 Identities=18% Similarity=0.144 Sum_probs=100.5
Q ss_pred ccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh-----CCceEEEeeccccChH
Q 010133 203 DTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL-----GYDIYDLELTEVHNNS 277 (517)
Q Consensus 203 ~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l-----~~~i~~l~l~~~~~~~ 277 (517)
.++.+.+..+..+.+.+...+.. .-.+.+.+.|-||||||.+..-+-..+ ...++.++|.++....
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~---------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLEL---------NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhc---------ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 56777777765554444443332 224578899999999999888664433 3355788998864322
Q ss_pred H---------------------HHHHHHh----ccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccC
Q 010133 278 E---------------------LRKLLMK----TSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCG 332 (517)
Q Consensus 278 ~---------------------L~~lf~~----~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (517)
. ....|.. ...+-+|++||+|.++. +
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~t----r------------------------- 271 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLIT----R------------------------- 271 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhh----c-------------------------
Confidence 1 1122221 12467999999999851 1
Q ss_pred CCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhc----cCCceeeEeccCCCHHHHHHHHHHh
Q 010133 333 SGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLR----SGRMDMHIFMSYCSYPALLILLKNY 408 (517)
Q Consensus 333 ~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlR----pGR~d~~I~~~~p~~e~~~~l~~~~ 408 (517)
.+.++-.|. +++.+ .+..+|+|+-.|..+.-|..|.| -+.-...+.|++.+.+++..|++.-
T Consensus 272 ----------~~~vLy~lF-ewp~l---p~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~r 337 (529)
T KOG2227|consen 272 ----------SQTVLYTLF-EWPKL---PNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQR 337 (529)
T ss_pred ----------ccceeeeeh-hcccC---CcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHH
Confidence 111222221 22333 23457889999999887776653 2334467889999999999999988
Q ss_pred cCCCC
Q 010133 409 LGYEE 413 (517)
Q Consensus 409 l~~~~ 413 (517)
+....
T Consensus 338 l~~~~ 342 (529)
T KOG2227|consen 338 LSEES 342 (529)
T ss_pred Hhccc
Confidence 76554
No 263
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.92 E-value=0.00034 Score=71.26 Aligned_cols=99 Identities=16% Similarity=0.216 Sum_probs=75.3
Q ss_pred ceecccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHH---HhCCceEE
Q 010133 191 WESVSFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMAN---YLGYDIYD 267 (517)
Q Consensus 191 w~~~~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~---~l~~~i~~ 267 (517)
.+.+...+-..|+.+++.+...+.++.....+.--. -++|+.|..||||-.+|+|.-. .-+.+|+.
T Consensus 192 ~~~~~~~~~~~F~~~v~~S~~mk~~v~qA~k~AmlD-----------APLLI~GeTGTGKdLlAkaCH~~S~R~~~pFla 260 (511)
T COG3283 192 LQNVAAQDVSGFEQIVAVSPKMKHVVEQAQKLAMLD-----------APLLITGETGTGKDLLAKACHLASPRHSKPFLA 260 (511)
T ss_pred HhhcccccccchHHHhhccHHHHHHHHHHHHhhccC-----------CCeEEecCCCchHHHHHHHHhhcCcccCCCeeE
Confidence 344566677889999999999888887776665431 2599999999999999998733 33789999
Q ss_pred EeeccccChHHHHHHHHhc------------cCCcEEEEccchhh
Q 010133 268 LELTEVHNNSELRKLLMKT------------SSKSIIVIEDIDCS 300 (517)
Q Consensus 268 l~l~~~~~~~~L~~lf~~~------------~~~sII~iDdID~~ 300 (517)
+||..+-.+..=..+|..+ .+...+|+|+|-.+
T Consensus 261 lNCA~lPe~~aEsElFG~apg~~gk~GffE~AngGTVlLDeIgEm 305 (511)
T COG3283 261 LNCASLPEDAAESELFGHAPGDEGKKGFFEQANGGTVLLDEIGEM 305 (511)
T ss_pred eecCCCchhHhHHHHhcCCCCCCCccchhhhccCCeEEeehhhhc
Confidence 9999996655556666544 34578999999764
No 264
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.87 E-value=2.3e-05 Score=84.95 Aligned_cols=67 Identities=27% Similarity=0.355 Sum_probs=50.4
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh-CCceEEEee
Q 010133 197 KHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL-GYDIYDLEL 270 (517)
Q Consensus 197 ~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l-~~~i~~l~l 270 (517)
....-|+++.|.++.+++|++.+..-...- + ..++-++|.||||+|||||+++||+.+ .+++|.+..
T Consensus 70 ~ry~fF~d~yGlee~ieriv~~l~~Aa~gl------~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 70 KRYPAFEEFYGMEEAIEQIVSYFRHAAQGL------E-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred ccccchhcccCcHHHHHHHHHHHHHHHHhc------C-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 445569999999999888876554433321 1 224578899999999999999999988 678887754
No 265
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.86 E-value=0.00017 Score=71.88 Aligned_cols=89 Identities=19% Similarity=0.230 Sum_probs=59.3
Q ss_pred cccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcc--eEEeCCCCCcHHHHHHHHHHHhC---C--ceE-----EEeec
Q 010133 204 TLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRG--YLLYGPPGTGKSSMIAAMANYLG---Y--DIY-----DLELT 271 (517)
Q Consensus 204 tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg--~LL~GpPGTGKTsla~alA~~l~---~--~i~-----~l~l~ 271 (517)
.|.|..-.++.|+..+..|+.++. ++++ +=|||+|||||+..++.||+.+- . +++ ..++.
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~--------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP 154 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN--------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFP 154 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC--------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCC
Confidence 467888899999999999998752 2233 34799999999999999999872 1 111 11111
Q ss_pred cccC----hHHHHHHHHhc---cCCcEEEEccchhh
Q 010133 272 EVHN----NSELRKLLMKT---SSKSIIVIEDIDCS 300 (517)
Q Consensus 272 ~~~~----~~~L~~lf~~~---~~~sII~iDdID~~ 300 (517)
.-.. ..+|+..+..+ -.++|.++||+|.+
T Consensus 155 ~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 155 HASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 1110 12233333332 26799999999986
No 266
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.85 E-value=5.9e-05 Score=71.88 Aligned_cols=114 Identities=17% Similarity=0.236 Sum_probs=59.8
Q ss_pred eEEeCCCCCcHHHHHHHH-HHHh---CCceEEEeecccc-----C--h-------------------HHHHHHHHhccCC
Q 010133 240 YLLYGPPGTGKSSMIAAM-ANYL---GYDIYDLELTEVH-----N--N-------------------SELRKLLMKTSSK 289 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~al-A~~l---~~~i~~l~l~~~~-----~--~-------------------~~L~~lf~~~~~~ 289 (517)
+|++|.||+|||..|-.. +... |.+++. |+..+. . . ..+ ......+..
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 80 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDP-DDWRKLPKG 80 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGH-HHHTTSGTT
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhh-hhhcccCCC
Confidence 689999999999988665 4332 667665 554331 0 0 011 111223468
Q ss_pred cEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEE
Q 010133 290 SIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVF 369 (517)
Q Consensus 290 sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~ 369 (517)
+||||||+...++..... .......++.+.-. ...+.-||+
T Consensus 81 ~liviDEa~~~~~~r~~~------------------------------------~~~~~~~~~~l~~h---Rh~g~diil 121 (193)
T PF05707_consen 81 SLIVIDEAQNFFPSRSWK------------------------------------GKKVPEIIEFLAQH---RHYGWDIIL 121 (193)
T ss_dssp -EEEETTGGGTSB---T-------------------------------------T----HHHHGGGGC---CCTT-EEEE
T ss_pred cEEEEECChhhcCCCccc------------------------------------cccchHHHHHHHHh---CcCCcEEEE
Confidence 999999999976321110 00112233444322 123467899
Q ss_pred EeCCCCCCChhhhccCCceeeEeccCC
Q 010133 370 TTNHIEKLDPALLRSGRMDMHIFMSYC 396 (517)
Q Consensus 370 TTN~~e~LD~ALlRpGR~d~~I~~~~p 396 (517)
+|-++..||+.+++ +++.++++..+
T Consensus 122 iTQ~~~~id~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 122 ITQSPSQIDKFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp EES-GGGB-HHHHC--CEEEEEEEEE-
T ss_pred EeCCHHHHhHHHHH--HHheEEEEEee
Confidence 99999999999987 99999987654
No 267
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.84 E-value=1.5e-05 Score=73.68 Aligned_cols=34 Identities=35% Similarity=0.494 Sum_probs=30.3
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEe
Q 010133 236 WKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLE 269 (517)
Q Consensus 236 ~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~ 269 (517)
.+..++|+||||||||++++++|..+++++++.+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 4568999999999999999999999999888654
No 268
>PRK07261 topology modulation protein; Provisional
Probab=97.79 E-value=5.7e-05 Score=70.58 Aligned_cols=30 Identities=20% Similarity=0.429 Sum_probs=27.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCCceEEEe
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGYDIYDLE 269 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~~i~~l~ 269 (517)
+++.|+||+|||||++.|+..++.+++.+|
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D 32 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLD 32 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecC
Confidence 789999999999999999999998876654
No 269
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.76 E-value=9.5e-05 Score=77.24 Aligned_cols=63 Identities=24% Similarity=0.397 Sum_probs=42.8
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHh----C-CceEEEeeccc----------------------cChHHHHHHHHhccCC
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYL----G-YDIYDLELTEV----------------------HNNSELRKLLMKTSSK 289 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l----~-~~i~~l~l~~~----------------------~~~~~L~~lf~~~~~~ 289 (517)
...++|.||+|+||||++..||..+ | ..+..+.+... .+...+...+......
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 4568999999999999999999864 3 34554544332 1223455555556677
Q ss_pred cEEEEccchh
Q 010133 290 SIIVIEDIDC 299 (517)
Q Consensus 290 sII~iDdID~ 299 (517)
.+|+||..-.
T Consensus 217 DlVLIDTaG~ 226 (374)
T PRK14722 217 HMVLIDTIGM 226 (374)
T ss_pred CEEEEcCCCC
Confidence 8888887754
No 270
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.75 E-value=0.00011 Score=85.22 Aligned_cols=138 Identities=20% Similarity=0.284 Sum_probs=85.5
Q ss_pred CCCcceEEeCCCCCcHHHH-HHHHHHHhCCceEEEeeccccC-hHHHHHHHHhc------------cC----CcEEEEcc
Q 010133 235 AWKRGYLLYGPPGTGKSSM-IAAMANYLGYDIYDLELTEVHN-NSELRKLLMKT------------SS----KSIIVIED 296 (517)
Q Consensus 235 ~~~rg~LL~GpPGTGKTsl-a~alA~~l~~~i~~l~l~~~~~-~~~L~~lf~~~------------~~----~sII~iDd 296 (517)
.-.|+|+++||||+|||+| .-+|-+++-+++..+|.+.-.+ ++.|+-|=..+ |. .-|+|.||
T Consensus 1492 nt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLFcDe 1571 (3164)
T COG5245 1492 NTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLFCDE 1571 (3164)
T ss_pred hccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCCHHHHHHHHhhceeeccCCeEEEccCcchhheEEEeec
Confidence 3468999999999999995 5689999999999999887654 44444443332 22 25899999
Q ss_pred chhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCC------CceEEEEE
Q 010133 297 IDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCG------SEKIFVFT 370 (517)
Q Consensus 297 ID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~------~~~iiI~T 370 (517)
|. +- +.. .+ .+..-+.+..-|-+-.|+|+... .+.++.++
T Consensus 1572 In-Lp----~~~--------------~y---------------~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Ga 1617 (3164)
T COG5245 1572 IN-LP----YGF--------------EY---------------YPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGA 1617 (3164)
T ss_pred cC-Cc----ccc--------------cc---------------CCCceEEeeHHHHHhcccccchhhhHhhhcceEEEcc
Confidence 98 31 000 00 01111111111223356765421 23778889
Q ss_pred eCCCCCC-----ChhhhccCCceeeEeccCCCHHHHHHHHHHhc
Q 010133 371 TNHIEKL-----DPALLRSGRMDMHIFMSYCSYPALLILLKNYL 409 (517)
Q Consensus 371 TN~~e~L-----D~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l 409 (517)
+|.+... ...++| | ...|.+.||.-....++...++
T Consensus 1618 cnp~td~gRv~~~eRf~r--~-~v~vf~~ype~~SL~~Iyea~l 1658 (3164)
T COG5245 1618 CNPGTDEGRVKYYERFIR--K-PVFVFCCYPELASLRNIYEAVL 1658 (3164)
T ss_pred CCCCCCcccCccHHHHhc--C-ceEEEecCcchhhHHHHHHHHH
Confidence 9876542 245554 2 3667889998877777776655
No 271
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.74 E-value=0.00029 Score=70.14 Aligned_cols=60 Identities=20% Similarity=0.262 Sum_probs=44.6
Q ss_pred eEEEEEeCC------------CCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHh
Q 010133 365 KIFVFTTNH------------IEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDV 427 (517)
Q Consensus 365 ~iiI~TTN~------------~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l 427 (517)
-|+|++||+ |..++-.|+. |+ ..|...+.+.++.+.|++..+..++..++++.++.+...
T Consensus 318 PiiimaTNrgit~iRGTn~~SphGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i 389 (454)
T KOG2680|consen 318 PIIIMATNRGITRIRGTNYRSPHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKI 389 (454)
T ss_pred cEEEEEcCCceEEeecCCCCCCCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHh
Confidence 478888874 4567778887 77 567777778899999999988877776666666655543
No 272
>PRK08118 topology modulation protein; Reviewed
Probab=97.74 E-value=5.1e-05 Score=70.70 Aligned_cols=32 Identities=25% Similarity=0.463 Sum_probs=29.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEEee
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDLEL 270 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l~l 270 (517)
-+++.||||+||||||+.|++.++.+++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 48999999999999999999999999998873
No 273
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.73 E-value=0.00012 Score=71.19 Aligned_cols=39 Identities=26% Similarity=0.454 Sum_probs=33.1
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeec
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELT 271 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~ 271 (517)
|++...-++++||||||||+++..+|... +..++.+++.
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 77777789999999999999999998654 6778888776
No 274
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.73 E-value=1.9e-05 Score=81.62 Aligned_cols=129 Identities=20% Similarity=0.223 Sum_probs=73.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecc----c-----cChH----HHH-HHHHhccCCcEEEEccchhhhccc
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTE----V-----HNNS----ELR-KLLMKTSSKSIIVIEDIDCSISLS 304 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~----~-----~~~~----~L~-~lf~~~~~~sII~iDdID~~~~~~ 304 (517)
++||.|.||||||.|.+.+++.....+|.---+. + .++. .+. ..+. ...+.|++|||+|.+
T Consensus 59 hiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalv-lad~GiccIDe~dk~---- 133 (331)
T PF00493_consen 59 HILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALV-LADGGICCIDEFDKM---- 133 (331)
T ss_dssp -EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHH-HCTTSEEEECTTTT-----
T ss_pred ceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceeccccccceeEEeCCchh-cccCceeeecccccc----
Confidence 6999999999999999999877766665431111 1 1110 000 0111 236799999999986
Q ss_pred cccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCC---------cccCCCceEEEEEeCCCC
Q 010133 305 NRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGL---------WSCCGSEKIFVFTTNHIE 375 (517)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~---------~s~~~~~~iiI~TTN~~e 375 (517)
.......|+.+|+.- ...-.-..-|++++|...
T Consensus 134 --------------------------------------~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~ 175 (331)
T PF00493_consen 134 --------------------------------------KEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKF 175 (331)
T ss_dssp ---------------------------------------CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT
T ss_pred --------------------------------------cchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhh
Confidence 112355667777532 111111235788888665
Q ss_pred -------------CCChhhhccCCceeeEec-cCCCHHHHHHHHHHhcCCC
Q 010133 376 -------------KLDPALLRSGRMDMHIFM-SYCSYPALLILLKNYLGYE 412 (517)
Q Consensus 376 -------------~LD~ALlRpGR~d~~I~~-~~p~~e~~~~l~~~~l~~~ 412 (517)
.++++|+. |||..+.+ ..++.+.=..+.++.+...
T Consensus 176 g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 176 GRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp --S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred hhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEecc
Confidence 47889999 99998765 6667666666777666543
No 275
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.69 E-value=0.00021 Score=77.36 Aligned_cols=163 Identities=15% Similarity=0.264 Sum_probs=100.1
Q ss_pred cccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCC--cceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccc------
Q 010133 202 FDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWK--RGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEV------ 273 (517)
Q Consensus 202 f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~--rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~------ 273 (517)
|-.|.|.+.+|..|+ ...+-+-..++.-|.+.+ -++++.|.||||||-+.++.++.+-..+|..--++-
T Consensus 344 ~PsIyGhe~VK~Gil---L~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTa 420 (764)
T KOG0480|consen 344 FPSIYGHELVKAGIL---LSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTA 420 (764)
T ss_pred CccccchHHHHhhHH---HHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceE
Confidence 567788888888773 334444444444455543 359999999999999999999999888886522111
Q ss_pred --cChHHHHHHHHhc-----cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhH
Q 010133 274 --HNNSELRKLLMKT-----SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSIT 346 (517)
Q Consensus 274 --~~~~~L~~lf~~~-----~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (517)
..+++--....++ ....|-.|||+|.+= . ..
T Consensus 421 aVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd---------------------------------------~---~d 458 (764)
T KOG0480|consen 421 AVVKDEESGDFTIEAGALMLADNGICCIDEFDKMD---------------------------------------V---KD 458 (764)
T ss_pred EEEecCCCCceeeecCcEEEccCceEEechhcccC---------------------------------------h---Hh
Confidence 0111111122222 467899999999861 0 01
Q ss_pred HHHHHHhhc---------CCcccCCCceEEEEEeCCCC-------------CCChhhhccCCceeeE-eccCCCHHHHHH
Q 010133 347 LSGLLNFTD---------GLWSCCGSEKIFVFTTNHIE-------------KLDPALLRSGRMDMHI-FMSYCSYPALLI 403 (517)
Q Consensus 347 ls~LLn~lD---------g~~s~~~~~~iiI~TTN~~e-------------~LD~ALlRpGR~d~~I-~~~~p~~e~~~~ 403 (517)
.-.++.+|+ |+..+-+..--||+++|... +++++|+. |||... .+..|++..=..
T Consensus 459 qvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ 536 (764)
T KOG0480|consen 459 QVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYA 536 (764)
T ss_pred HHHHHHHHHhheehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHH
Confidence 123344443 22111111123667777542 36899999 999765 678898887777
Q ss_pred HHHHhcCC
Q 010133 404 LLKNYLGY 411 (517)
Q Consensus 404 l~~~~l~~ 411 (517)
+.++.+..
T Consensus 537 ia~hIld~ 544 (764)
T KOG0480|consen 537 IARHILDL 544 (764)
T ss_pred HHHHHHHH
Confidence 77777644
No 276
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.67 E-value=0.0003 Score=68.06 Aligned_cols=39 Identities=28% Similarity=0.467 Sum_probs=31.5
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeec
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELT 271 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~ 271 (517)
|++..+-++++||||||||+|+..+|.+. +.+++.++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 67777779999999999999999998665 5666666543
No 277
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00027 Score=80.51 Aligned_cols=148 Identities=22% Similarity=0.312 Sum_probs=92.7
Q ss_pred cccccCC-hHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh----------CCceEEEee
Q 010133 202 FDTLAID-PEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL----------GYDIYDLEL 270 (517)
Q Consensus 202 f~tv~~~-~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l----------~~~i~~l~l 270 (517)
++.+++. ++....+++.+.+-. +++-+|.|.||.|||.++.-+|+.. +..++.+++
T Consensus 185 ldPvigr~deeirRvi~iL~Rrt-------------k~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSRKT-------------KNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCccCCchHHHHHHHHHHhccC-------------CCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 6778886 555555555443222 3578999999999999999999876 456677777
Q ss_pred ccccC--------hHHHHHHHHh---ccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCC
Q 010133 271 TEVHN--------NSELRKLLMK---TSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGE 339 (517)
Q Consensus 271 ~~~~~--------~~~L~~lf~~---~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (517)
..+.. +..+..++.+ ...+.||+|||++.++. . +..
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg---~---------------------------g~~--- 298 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVG---S---------------------------GSN--- 298 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeec---C---------------------------CCc---
Confidence 65522 3456667664 44778999999999852 0 000
Q ss_pred CCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCC-----CChhhhccCCceeeEeccCCCHHHHHHHH
Q 010133 340 DGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEK-----LDPALLRSGRMDMHIFMSYCSYPALLILL 405 (517)
Q Consensus 340 ~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~-----LD~ALlRpGR~d~~I~~~~p~~e~~~~l~ 405 (517)
....-...+|..+-+. ++.-+|+||..-+. -||||-| ||+. +.++.|+.+....++
T Consensus 299 --~~~~d~~nlLkp~L~r-----g~l~~IGatT~e~Y~k~iekdPalEr--rw~l-~~v~~pS~~~~~~iL 359 (898)
T KOG1051|consen 299 --YGAIDAANLLKPLLAR-----GGLWCIGATTLETYRKCIEKDPALER--RWQL-VLVPIPSVENLSLIL 359 (898)
T ss_pred --chHHHHHHhhHHHHhc-----CCeEEEecccHHHHHHHHhhCcchhh--Ccce-eEeccCcccchhhhh
Confidence 1122333344333221 23667776643222 2899999 9975 567777765533333
No 278
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.62 E-value=4.5e-05 Score=74.05 Aligned_cols=63 Identities=24% Similarity=0.390 Sum_probs=38.4
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecc-------------c---cChHHHHHHHHhc----cCCcEEEEcc
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTE-------------V---HNNSELRKLLMKT----SSKSIIVIED 296 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~-------------~---~~~~~L~~lf~~~----~~~sII~iDd 296 (517)
+.-+|+||+||||||++|+.+++. .-++..+.+. + ..-..+...+... ....+||||.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs 89 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN 89 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence 345999999999999999999742 1122222211 0 1112333333322 3468999999
Q ss_pred chhhh
Q 010133 297 IDCSI 301 (517)
Q Consensus 297 ID~~~ 301 (517)
|+.+.
T Consensus 90 I~~l~ 94 (220)
T TIGR01618 90 ISALQ 94 (220)
T ss_pred HHHHH
Confidence 99874
No 279
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.62 E-value=6.9e-05 Score=65.95 Aligned_cols=52 Identities=17% Similarity=0.051 Sum_probs=41.3
Q ss_pred cccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh
Q 010133 204 TLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 204 tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l 261 (517)
.|.|.+-.++.|++.+..|+.++. -..|--+-||||||||||.+++-||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~------p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPN------PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCC------CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 477888899999999999997741 1112234589999999999999999986
No 280
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.61 E-value=5.8e-05 Score=68.50 Aligned_cols=31 Identities=32% Similarity=0.505 Sum_probs=28.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEEe
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDLE 269 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l~ 269 (517)
.++|+||||+|||++++.+|..++++++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 3799999999999999999999999988665
No 281
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.60 E-value=0.00046 Score=67.61 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=31.0
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEee
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLEL 270 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l 270 (517)
|+|....++++||||||||+|+.+++... +.+++.+++
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 78888899999999999999999986543 566666654
No 282
>PRK13947 shikimate kinase; Provisional
Probab=97.59 E-value=5.8e-05 Score=69.99 Aligned_cols=32 Identities=28% Similarity=0.415 Sum_probs=29.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEEee
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDLEL 270 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l~l 270 (517)
.++|.|+||||||++++.||+.+++++++.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 48999999999999999999999999988663
No 283
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.58 E-value=0.002 Score=67.88 Aligned_cols=93 Identities=19% Similarity=0.214 Sum_probs=58.3
Q ss_pred eEEEEEeC--CCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCC-------------C----ChHhHHHHH
Q 010133 365 KIFVFTTN--HIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESD-------------L----EDETLKELE 425 (517)
Q Consensus 365 ~iiI~TTN--~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~-------------~----~~~~~~~i~ 425 (517)
.+|+.|++ ....|..|| |.|.=..|.++-|+++.-+......|...... . ......++.
T Consensus 185 HVIFlT~dv~~~k~LskaL--Pn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld 262 (431)
T PF10443_consen 185 HVIFLTDDVSYSKPLSKAL--PNRVFKTISLSDASPESAKQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELD 262 (431)
T ss_pred EEEEECCCCchhhhHHHhC--CCCceeEEeecCCCHHHHHHHHHHHhcccccccccccccccccccccccccccchHHHH
Confidence 34444443 223456666 44888999999999999888888887654110 0 012444555
Q ss_pred HhhCCCCCCHHHHHHHHH--HhcccHHHHHHHHHHH
Q 010133 426 DVVGKAEMTPADISEVLI--KNKRDKCKAVRELLET 459 (517)
Q Consensus 426 ~l~~~~~~spadi~~~l~--~~~~~~~~al~~l~~~ 459 (517)
..+..-|=---|++.+.. +....|..|+++++..
T Consensus 263 ~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~q 298 (431)
T PF10443_consen 263 ECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIISQ 298 (431)
T ss_pred HHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 554444444456665554 4568899999988854
No 284
>PRK03839 putative kinase; Provisional
Probab=97.58 E-value=5.9e-05 Score=70.79 Aligned_cols=30 Identities=37% Similarity=0.698 Sum_probs=27.5
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCCceEEEe
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGYDIYDLE 269 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~~i~~l~ 269 (517)
++|.|+||+||||+++.||+.+++++++++
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 789999999999999999999999887654
No 285
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.57 E-value=0.00043 Score=64.85 Aligned_cols=31 Identities=32% Similarity=0.347 Sum_probs=24.4
Q ss_pred eEEeCCCCCcHHHHHHHHHHHh---CCceEEEee
Q 010133 240 YLLYGPPGTGKSSMIAAMANYL---GYDIYDLEL 270 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l 270 (517)
+|++||||||||+|+..+|.+. |.+++.+++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 7899999999999999876543 566666554
No 286
>PF14516 AAA_35: AAA-like domain
Probab=97.57 E-value=0.0023 Score=66.19 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=30.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccc
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEV 273 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~ 273 (517)
-+.++||..+|||||...+.+.+ |+..+.+|+..+
T Consensus 33 ~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~ 70 (331)
T PF14516_consen 33 YIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQL 70 (331)
T ss_pred EEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecC
Confidence 47899999999999999987665 888888888876
No 287
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.57 E-value=0.0011 Score=69.98 Aligned_cols=37 Identities=32% Similarity=0.562 Sum_probs=28.4
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHHHh-------CCceEEEeecc
Q 010133 236 WKRGYLLYGPPGTGKSSMIAAMANYL-------GYDIYDLELTE 272 (517)
Q Consensus 236 ~~rg~LL~GpPGTGKTsla~alA~~l-------~~~i~~l~l~~ 272 (517)
.++-++|+||+|+||||.+.-||..+ +..+..+++..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt 216 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDN 216 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccC
Confidence 35679999999999999999999876 34555554444
No 288
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.56 E-value=0.00045 Score=64.54 Aligned_cols=63 Identities=16% Similarity=0.290 Sum_probs=45.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccChH-----------------------HHHHHHHh-ccCCcEEEE
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNNS-----------------------ELRKLLMK-TSSKSIIVI 294 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~~~-----------------------~L~~lf~~-~~~~sII~i 294 (517)
-+|+.||||||||++|..+|..++.+++.+......+++ +|..++.. ..++.+|+|
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~~~~VlI 82 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAPGRCVLV 82 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCCCCEEEe
Confidence 379999999999999999999998887776654442221 24444444 345668888
Q ss_pred ccchhhh
Q 010133 295 EDIDCSI 301 (517)
Q Consensus 295 DdID~~~ 301 (517)
|-+-.++
T Consensus 83 D~Lt~~~ 89 (170)
T PRK05800 83 DCLTTWV 89 (170)
T ss_pred hhHHHHH
Confidence 8888764
No 289
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.55 E-value=3.7e-05 Score=68.89 Aligned_cols=24 Identities=46% Similarity=0.869 Sum_probs=22.5
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCC
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGY 263 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~ 263 (517)
++++|||||||||+|+.++..++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~ 25 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGA 25 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC
Confidence 689999999999999999999993
No 290
>PRK00625 shikimate kinase; Provisional
Probab=97.55 E-value=7e-05 Score=70.21 Aligned_cols=31 Identities=32% Similarity=0.583 Sum_probs=29.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEEe
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDLE 269 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l~ 269 (517)
.++|.|+||+|||++++.+|+.++++++++|
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4899999999999999999999999998876
No 291
>PRK13949 shikimate kinase; Provisional
Probab=97.53 E-value=7.2e-05 Score=69.81 Aligned_cols=31 Identities=35% Similarity=0.540 Sum_probs=29.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEEe
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDLE 269 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l~ 269 (517)
.++|.||||+|||++++.||+.+++++++++
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5899999999999999999999999988876
No 292
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.52 E-value=0.0003 Score=68.27 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=31.2
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHh---C------CceEEEeecc
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYL---G------YDIYDLELTE 272 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l---~------~~i~~l~l~~ 272 (517)
|++...-+.|+||||||||+|+..+|... + ..++.++...
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 77777789999999999999999987653 2 5556666544
No 293
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.51 E-value=0.00042 Score=79.25 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=20.9
Q ss_pred cceEEeCCCCCcHHHHHHHHHHH
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~ 260 (517)
+.++|.||.|+|||++.+.++..
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 46899999999999999999876
No 294
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.51 E-value=0.00035 Score=68.27 Aligned_cols=40 Identities=15% Similarity=0.151 Sum_probs=30.8
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHh---------CCceEEEeecc
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYL---------GYDIYDLELTE 272 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l---------~~~i~~l~l~~ 272 (517)
|++...-+.|+||||||||+|+..+|... +..++.++...
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 67777779999999999999999997543 24666666544
No 295
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.51 E-value=0.00052 Score=69.43 Aligned_cols=60 Identities=28% Similarity=0.438 Sum_probs=41.8
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHh----C-CceEEEeeccc----------------------cChHHHHHHHHhccCC
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYL----G-YDIYDLELTEV----------------------HNNSELRKLLMKTSSK 289 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l----~-~~i~~l~l~~~----------------------~~~~~L~~lf~~~~~~ 289 (517)
++-++|.||+|+||||++..||.++ + ..+..+++... .+...+...+......
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~~~ 273 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLRDK 273 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHccCC
Confidence 3468899999999999999998876 3 67777766542 1233455555555556
Q ss_pred cEEEEcc
Q 010133 290 SIIVIED 296 (517)
Q Consensus 290 sII~iDd 296 (517)
.+||||.
T Consensus 274 d~vliDt 280 (282)
T TIGR03499 274 DLILIDT 280 (282)
T ss_pred CEEEEeC
Confidence 6777764
No 296
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.49 E-value=0.00052 Score=70.35 Aligned_cols=69 Identities=16% Similarity=0.292 Sum_probs=44.7
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeecccc---------------------ChHHHHHHH---Hh
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVH---------------------NNSELRKLL---MK 285 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~---------------------~~~~L~~lf---~~ 285 (517)
|+|..+-+++|||||||||+|+..++... +..+..++..... +..+...++ ..
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 77878889999999999999988765443 5556555443211 111111111 22
Q ss_pred ccCCcEEEEccchhhh
Q 010133 286 TSSKSIIVIEDIDCSI 301 (517)
Q Consensus 286 ~~~~sII~iDdID~~~ 301 (517)
...+.+||||-|-++.
T Consensus 131 ~~~~~lIVIDSv~al~ 146 (321)
T TIGR02012 131 SGAVDIIVVDSVAALV 146 (321)
T ss_pred ccCCcEEEEcchhhhc
Confidence 3467899999999874
No 297
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.48 E-value=0.00049 Score=66.71 Aligned_cols=63 Identities=21% Similarity=0.313 Sum_probs=39.7
Q ss_pred cceEEeCCCCCcHHHHHHHHHH-----HhCCceE---------EEeeccccC-----------h---HHHHHHHHhccCC
Q 010133 238 RGYLLYGPPGTGKSSMIAAMAN-----YLGYDIY---------DLELTEVHN-----------N---SELRKLLMKTSSK 289 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~-----~l~~~i~---------~l~l~~~~~-----------~---~~L~~lf~~~~~~ 289 (517)
|.++|.||.|+|||++.+.++. ..|..+. .-....+.. . ..+..++..+..+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~~ 109 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATRR 109 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCCC
Confidence 5799999999999999999973 2233221 111111111 1 2233334455789
Q ss_pred cEEEEccchhh
Q 010133 290 SIIVIEDIDCS 300 (517)
Q Consensus 290 sII~iDdID~~ 300 (517)
++|+|||+-.-
T Consensus 110 slvllDE~~~g 120 (213)
T cd03281 110 SLVLIDEFGKG 120 (213)
T ss_pred cEEEeccccCC
Confidence 99999999763
No 298
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.48 E-value=9.8e-05 Score=66.41 Aligned_cols=38 Identities=26% Similarity=0.559 Sum_probs=30.9
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccChH
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNNS 277 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~~~ 277 (517)
..+|++|-||||||+++.+||..++++.+.+ +.+..+.
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~i--sd~vkEn 45 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEI--SDLVKEN 45 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEeh--hhHHhhh
Confidence 4799999999999999999999999887654 4443333
No 299
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.47 E-value=0.00029 Score=67.48 Aligned_cols=60 Identities=18% Similarity=0.309 Sum_probs=39.6
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccChHHHHHHHHhccCCcEEEEccchhh
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNNSELRKLLMKTSSKSIIVIEDIDCS 300 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~~~~L~~lf~~~~~~sII~iDdID~~ 300 (517)
|....-.++|.|+.|+|||++++.|+.. +|.=+.....+.+.+ ......-||.|||++.+
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~~~kd~~----~~l~~~~iveldEl~~~ 107 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDFDDKDFL----EQLQGKWIVELDELDGL 107 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHH----hccCccccCCCcHHH----HHHHHhHheeHHHHhhc
Confidence 5555567889999999999999999766 222122222222222 23344579999999985
No 300
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.46 E-value=9.2e-05 Score=68.76 Aligned_cols=33 Identities=30% Similarity=0.368 Sum_probs=30.4
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCceEEEee
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYDLEL 270 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l 270 (517)
+.+.|.|++|+||||+.++||..|+++|++.|-
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~ 35 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQ 35 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchH
Confidence 468999999999999999999999999998763
No 301
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.45 E-value=0.00096 Score=63.75 Aligned_cols=35 Identities=40% Similarity=0.641 Sum_probs=26.1
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeecc
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTE 272 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~ 272 (517)
+-.++.||||||||+++++++..+ +..++.+..+.
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~ 56 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTN 56 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSH
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcH
Confidence 357889999999999999987655 66777665544
No 302
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.42 E-value=0.0015 Score=68.25 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=21.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhC
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~ 262 (517)
.|++||||||||+|++.|++...
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHH
Confidence 78999999999999999998774
No 303
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.41 E-value=0.00076 Score=69.27 Aligned_cols=69 Identities=14% Similarity=0.298 Sum_probs=45.9
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeecccc---------------------ChHHHHHHH---Hh
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVH---------------------NNSELRKLL---MK 285 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~---------------------~~~~L~~lf---~~ 285 (517)
|+|..+-+++|||||||||+|+..+|... +..++.++...-. +..++..++ ..
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 67877789999999999999999876433 5666666553310 111121222 22
Q ss_pred ccCCcEEEEccchhhh
Q 010133 286 TSSKSIIVIEDIDCSI 301 (517)
Q Consensus 286 ~~~~sII~iDdID~~~ 301 (517)
.....+||||-|-++.
T Consensus 131 s~~~~lIVIDSvaal~ 146 (325)
T cd00983 131 SGAVDLIVVDSVAALV 146 (325)
T ss_pred ccCCCEEEEcchHhhc
Confidence 3467899999999875
No 304
>PRK14531 adenylate kinase; Provisional
Probab=97.41 E-value=0.00015 Score=68.47 Aligned_cols=30 Identities=30% Similarity=0.564 Sum_probs=26.6
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCceEE
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYD 267 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i~~ 267 (517)
+-++++||||+||||+++.||..+|++.+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is 32 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS 32 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 359999999999999999999999877654
No 305
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.40 E-value=0.00013 Score=68.33 Aligned_cols=28 Identities=25% Similarity=0.585 Sum_probs=24.5
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCCceEE
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGYDIYD 267 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~~i~~ 267 (517)
++++|||||||||+++.||..+++..+.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is 29 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLS 29 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 6899999999999999999999865433
No 306
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.40 E-value=0.0011 Score=59.38 Aligned_cols=27 Identities=30% Similarity=0.497 Sum_probs=23.9
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCc
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYD 264 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~ 264 (517)
.-++|.|+.|+|||+|++++++.++..
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 358899999999999999999998653
No 307
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.40 E-value=0.00046 Score=75.15 Aligned_cols=64 Identities=16% Similarity=0.177 Sum_probs=46.2
Q ss_pred CcceEEeCCCCCcHHHHHHHH--HHHhCCceEEEeeccccChHHHHHHHHhc------------------cCCcEEEEcc
Q 010133 237 KRGYLLYGPPGTGKSSMIAAM--ANYLGYDIYDLELTEVHNNSELRKLLMKT------------------SSKSIIVIED 296 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~al--A~~l~~~i~~l~l~~~~~~~~L~~lf~~~------------------~~~sII~iDd 296 (517)
.-.+||+|.|||||-.|++++ +....-+++.+||..+...-.=..+|.-. .....+|+||
T Consensus 336 ~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFlde 415 (606)
T COG3284 336 DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDE 415 (606)
T ss_pred CCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHHHH
Confidence 457999999999999999999 33467899999999984322223333211 1347889999
Q ss_pred chhh
Q 010133 297 IDCS 300 (517)
Q Consensus 297 ID~~ 300 (517)
|..+
T Consensus 416 Igd~ 419 (606)
T COG3284 416 IGDM 419 (606)
T ss_pred hhhc
Confidence 8765
No 308
>PRK06217 hypothetical protein; Validated
Probab=97.39 E-value=0.00014 Score=68.51 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=28.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEEe
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDLE 269 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l~ 269 (517)
-++|.|+||+||||++++||..++++++.+|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 3899999999999999999999999877654
No 309
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.39 E-value=0.01 Score=60.74 Aligned_cols=30 Identities=33% Similarity=0.295 Sum_probs=25.3
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHHhCCc
Q 010133 235 AWKRGYLLYGPPGTGKSSMIAAMANYLGYD 264 (517)
Q Consensus 235 ~~~rg~LL~GpPGTGKTsla~alA~~l~~~ 264 (517)
..+..+-|+||-|+|||++++.+-.++.-.
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 445678999999999999999998887544
No 310
>PRK13948 shikimate kinase; Provisional
Probab=97.39 E-value=0.00017 Score=68.17 Aligned_cols=34 Identities=26% Similarity=0.135 Sum_probs=31.4
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEe
Q 010133 236 WKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLE 269 (517)
Q Consensus 236 ~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~ 269 (517)
.++.++|.|+|||||||+++.+|..+++++++.|
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 3578999999999999999999999999999877
No 311
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.39 E-value=0.00014 Score=66.03 Aligned_cols=27 Identities=33% Similarity=0.506 Sum_probs=24.1
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCCceE
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGYDIY 266 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~~i~ 266 (517)
++|+||||+||||+++.++..++..++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i 28 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI 28 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE
Confidence 689999999999999999999876554
No 312
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.37 E-value=0.00016 Score=64.91 Aligned_cols=30 Identities=33% Similarity=0.546 Sum_probs=28.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCCceEEEe
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGYDIYDLE 269 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~~i~~l~ 269 (517)
+.+.|+||||||++++.||..++++++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 679999999999999999999999998877
No 313
>PRK14532 adenylate kinase; Provisional
Probab=97.37 E-value=0.00015 Score=68.53 Aligned_cols=29 Identities=24% Similarity=0.519 Sum_probs=25.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEE
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYD 267 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~ 267 (517)
.++|.|||||||||+++.||..+|+.++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is 30 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLS 30 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 38999999999999999999999876654
No 314
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.36 E-value=0.00015 Score=66.84 Aligned_cols=27 Identities=37% Similarity=0.696 Sum_probs=23.9
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCCceE
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGYDIY 266 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~~i~ 266 (517)
++|.|||||||||+++.|++.++..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v 27 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI 27 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 578999999999999999999986554
No 315
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.36 E-value=0.00011 Score=68.58 Aligned_cols=38 Identities=26% Similarity=0.499 Sum_probs=27.1
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHhCCc---eEEEeecccc
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYLGYD---IYDLELTEVH 274 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l~~~---i~~l~l~~~~ 274 (517)
++.++|+||||+|||+|+++++..+..+ ++.+++....
T Consensus 24 ~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~~ 64 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDSE 64 (185)
T ss_dssp ---EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEeccc
Confidence 3689999999999999999997776443 7778887763
No 316
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.35 E-value=0.00034 Score=71.72 Aligned_cols=58 Identities=24% Similarity=0.343 Sum_probs=42.5
Q ss_pred CChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEe
Q 010133 207 IDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLE 269 (517)
Q Consensus 207 ~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~ 269 (517)
++++.++.+.+.+..++... +-+..+..++|.|+||||||++++.+|..+|+++++++
T Consensus 108 l~~~~~~~~~~~l~~~~~~~-----~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 108 ASPAQLARVRDALSGMLGAG-----RRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CCHHHHHHHHHHHHHHHhhh-----hhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 45566666655555544321 22445567999999999999999999999999999654
No 317
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.35 E-value=0.0012 Score=64.65 Aligned_cols=37 Identities=30% Similarity=0.411 Sum_probs=27.0
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHH-Hh--CCceEEEe
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMAN-YL--GYDIYDLE 269 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~-~l--~~~i~~l~ 269 (517)
|+|...-+++.||||||||+|+..++. .+ +..++.++
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 577777899999999999999755543 32 45555554
No 318
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.34 E-value=0.00066 Score=73.04 Aligned_cols=69 Identities=25% Similarity=0.365 Sum_probs=47.1
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccccC--------------------hHHHHHHHHhc--c
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVHN--------------------NSELRKLLMKT--S 287 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~~--------------------~~~L~~lf~~~--~ 287 (517)
|++...-+||+||||+|||+|+..+|... +.+++.++..+-.. +..+..++... .
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 67777789999999999999999998765 56777766543210 11122222222 3
Q ss_pred CCcEEEEccchhhh
Q 010133 288 SKSIIVIEDIDCSI 301 (517)
Q Consensus 288 ~~sII~iDdID~~~ 301 (517)
.+.+|+||.|..+.
T Consensus 156 ~~~lVVIDSIq~l~ 169 (446)
T PRK11823 156 KPDLVVIDSIQTMY 169 (446)
T ss_pred CCCEEEEechhhhc
Confidence 67899999998764
No 319
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.34 E-value=0.0015 Score=69.29 Aligned_cols=116 Identities=18% Similarity=0.163 Sum_probs=71.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCc-eEEEeeccccChHHHHHH---HHhcc--CCcEEEEccchhhhccccccccCCC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYD-IYDLELTEVHNNSELRKL---LMKTS--SKSIIVIEDIDCSISLSNRNKRSNG 312 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~-i~~l~l~~~~~~~~L~~l---f~~~~--~~sII~iDdID~~~~~~~~~~~~~~ 312 (517)
-++++||-+||||++++-+...+.-. +|...|........+.+. +.... .++.||||||++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v------------ 106 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNV------------ 106 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEecccCc------------
Confidence 69999999999999998888877554 444444444343333333 22332 4589999999985
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCC-ChhhhccCCceeeE
Q 010133 313 SGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKL-DPALLRSGRMDMHI 391 (517)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~L-D~ALlRpGR~d~~I 391 (517)
......+..|.+ .. ...++|.++|..-.+ ..+-.=||| ...+
T Consensus 107 ----------------------------~~W~~~lk~l~d---~~-----~~~v~itgsss~ll~~~~~~~L~GR-~~~~ 149 (398)
T COG1373 107 ----------------------------PDWERALKYLYD---RG-----NLDVLITGSSSSLLSKEISESLAGR-GKDL 149 (398)
T ss_pred ----------------------------hhHHHHHHHHHc---cc-----cceEEEECCchhhhccchhhhcCCC-ceeE
Confidence 123344444433 21 113566555544332 333344689 4788
Q ss_pred eccCCCHHHHHH
Q 010133 392 FMSYCSYPALLI 403 (517)
Q Consensus 392 ~~~~p~~e~~~~ 403 (517)
.+.|.++.++..
T Consensus 150 ~l~PlSF~Efl~ 161 (398)
T COG1373 150 ELYPLSFREFLK 161 (398)
T ss_pred EECCCCHHHHHh
Confidence 888999888854
No 320
>PRK13946 shikimate kinase; Provisional
Probab=97.33 E-value=0.00017 Score=68.09 Aligned_cols=34 Identities=35% Similarity=0.493 Sum_probs=31.1
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHhCCceEEEee
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLEL 270 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l 270 (517)
++.++|.|+||||||++++.||..+|+++++.|.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 4579999999999999999999999999988773
No 321
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.33 E-value=0.0002 Score=66.97 Aligned_cols=33 Identities=36% Similarity=0.633 Sum_probs=30.0
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCceEEEee
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYDLEL 270 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l 270 (517)
+.++|.||||+|||++++.+|+.+++++++.+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 469999999999999999999999999887764
No 322
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.31 E-value=0.00019 Score=67.74 Aligned_cols=28 Identities=36% Similarity=0.642 Sum_probs=25.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCCceEE
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGYDIYD 267 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~~i~~ 267 (517)
++|+||||+|||++++.||..+++.++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~ 29 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS 29 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 7999999999999999999998876654
No 323
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.30 E-value=0.00078 Score=70.71 Aligned_cols=69 Identities=23% Similarity=0.355 Sum_probs=46.3
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeecccc--------------------ChHHHHHHHHh--cc
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVH--------------------NNSELRKLLMK--TS 287 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~--------------------~~~~L~~lf~~--~~ 287 (517)
|++...-+||+||||+|||+|+..+|..+ +.+++.++..+-. ....+..++.. ..
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 67777779999999999999999998765 3466666543210 01112223222 23
Q ss_pred CCcEEEEccchhhh
Q 010133 288 SKSIIVIEDIDCSI 301 (517)
Q Consensus 288 ~~sII~iDdID~~~ 301 (517)
.+.+|+||.|..+.
T Consensus 158 ~~~lVVIDSIq~l~ 171 (372)
T cd01121 158 KPDLVIIDSIQTVY 171 (372)
T ss_pred CCcEEEEcchHHhh
Confidence 78899999998874
No 324
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.28 E-value=0.00027 Score=65.66 Aligned_cols=32 Identities=34% Similarity=0.555 Sum_probs=29.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEEee
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDLEL 270 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l~l 270 (517)
.++|.|+||||||++++.+|..+|+++++.+.
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~ 35 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTDQ 35 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEccH
Confidence 58899999999999999999999999987653
No 325
>PRK04296 thymidine kinase; Provisional
Probab=97.28 E-value=0.0024 Score=60.74 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=24.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh---CCceEEE
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL---GYDIYDL 268 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l---~~~i~~l 268 (517)
-.|++||||+|||+++..+|..+ +..++.+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 36899999999999998887765 6666655
No 326
>PRK06762 hypothetical protein; Provisional
Probab=97.27 E-value=0.00029 Score=65.07 Aligned_cols=32 Identities=19% Similarity=0.362 Sum_probs=27.3
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCceEEEe
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYDLE 269 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~ 269 (517)
+-++|+|+||+||||+|+.++..++..++.++
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~ 34 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVS 34 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEec
Confidence 45889999999999999999999976666664
No 327
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.26 E-value=0.0067 Score=61.69 Aligned_cols=130 Identities=22% Similarity=0.293 Sum_probs=80.7
Q ss_pred cceEEeCCCCCcHHHHHHHH---HHHhCCceEEEeeccc-cC--------------------------hHHHHHHHHhc-
Q 010133 238 RGYLLYGPPGTGKSSMIAAM---ANYLGYDIYDLELTEV-HN--------------------------NSELRKLLMKT- 286 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~al---A~~l~~~i~~l~l~~~-~~--------------------------~~~L~~lf~~~- 286 (517)
..+++.||.|+|||.++... +.+.|-+++.+-+... .+ .+.+..++...
T Consensus 50 nsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~ 129 (408)
T KOG2228|consen 50 NSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEALK 129 (408)
T ss_pred CceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHh
Confidence 47999999999999987654 4477888888866543 11 12223333221
Q ss_pred ------cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCccc
Q 010133 287 ------SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSC 360 (517)
Q Consensus 287 ------~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~ 360 (517)
..+.|.++||||-.+. ...+.. |-|.+|-..++
T Consensus 130 ~~~~~t~~~ViFIldEfDlf~~--------------------------------------h~rQtl---lYnlfDisqs~ 168 (408)
T KOG2228|consen 130 KGDETTSGKVIFILDEFDLFAP--------------------------------------HSRQTL---LYNLFDISQSA 168 (408)
T ss_pred cCCCCCCceEEEEeehhhcccc--------------------------------------chhhHH---HHHHHHHHhhc
Confidence 1345667789997531 112222 44555554432
Q ss_pred CCCceEEEEEeCCCC---CCChhhhccCCceee-EeccCC-CHHHHHHHHHHhcCC
Q 010133 361 CGSEKIFVFTTNHIE---KLDPALLRSGRMDMH-IFMSYC-SYPALLILLKNYLGY 411 (517)
Q Consensus 361 ~~~~~iiI~TTN~~e---~LD~ALlRpGR~d~~-I~~~~p-~~e~~~~l~~~~l~~ 411 (517)
.-.+.||+.|.+.+ .|...... ||... |+|.++ ..++...+++..+..
T Consensus 169 -r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll~v 221 (408)
T KOG2228|consen 169 -RAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLLSV 221 (408)
T ss_pred -CCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHhcC
Confidence 34567777665544 44566666 99876 676655 688999999987743
No 328
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.25 E-value=0.00069 Score=67.86 Aligned_cols=91 Identities=24% Similarity=0.404 Sum_probs=55.1
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC---ceEEEee-ccc
Q 010133 198 HPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY---DIYDLEL-TEV 273 (517)
Q Consensus 198 ~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~---~i~~l~l-~~~ 273 (517)
.+.+++++.......+.+.+.+....+. +..+|+.||+|+||||++.+++.++.. .++.++- .++
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~v~~-----------~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSAVRG-----------RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHCHHT-----------TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred ccccHhhccCchhhHHHHHHHHhhcccc-----------ceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 4447888887766555544444333322 357999999999999999999998843 3444321 011
Q ss_pred -------------cChHHHHHHHHhc--cCCcEEEEccchh
Q 010133 274 -------------HNNSELRKLLMKT--SSKSIIVIEDIDC 299 (517)
Q Consensus 274 -------------~~~~~L~~lf~~~--~~~sII~iDdID~ 299 (517)
.....+.+++..+ ..|.+|+|.||-.
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 1223455555544 4789999999974
No 329
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.20 E-value=0.0017 Score=62.29 Aligned_cols=62 Identities=16% Similarity=0.307 Sum_probs=41.4
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHh-----CCceE-----------EEeecc---c---c-----ChHHHHHHHHhcc--C
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYL-----GYDIY-----------DLELTE---V---H-----NNSELRKLLMKTS--S 288 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l-----~~~i~-----------~l~l~~---~---~-----~~~~L~~lf~~~~--~ 288 (517)
+-++|.||+|+|||||.+.|+... |.++- ...++. + . .-.++..++.... .
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~ 105 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGE 105 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCCC
Confidence 468999999999999999998533 44331 001110 0 0 1134667777777 8
Q ss_pred CcEEEEccchh
Q 010133 289 KSIIVIEDIDC 299 (517)
Q Consensus 289 ~sII~iDdID~ 299 (517)
|.+|++||.=.
T Consensus 106 p~llllDEp~~ 116 (199)
T cd03283 106 PVLFLLDEIFK 116 (199)
T ss_pred CeEEEEecccC
Confidence 99999999754
No 330
>PRK14530 adenylate kinase; Provisional
Probab=97.20 E-value=0.00034 Score=67.75 Aligned_cols=30 Identities=30% Similarity=0.520 Sum_probs=26.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEE
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDL 268 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l 268 (517)
.++|.||||+||||+++.||..++++++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 589999999999999999999999876643
No 331
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.20 E-value=0.00069 Score=75.65 Aligned_cols=53 Identities=28% Similarity=0.304 Sum_probs=41.3
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY 263 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~ 263 (517)
.-+|..|+.|++.++.++.+...+. . ++.+||+||||||||++++++|..+..
T Consensus 24 ~~~~~~~~~vigq~~a~~~L~~~~~----~-----------~~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 24 EVPERLIDQVIGQEHAVEVIKKAAK----Q-----------RRHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred ccCcccHHHcCChHHHHHHHHHHHH----h-----------CCeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 3467899999998888765544222 2 137999999999999999999998753
No 332
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.20 E-value=0.00069 Score=71.38 Aligned_cols=77 Identities=17% Similarity=0.330 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHH--h--CCceEEEeeccccChHHHHHHHH
Q 010133 209 PEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANY--L--GYDIYDLELTEVHNNSELRKLLM 284 (517)
Q Consensus 209 ~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~--l--~~~i~~l~l~~~~~~~~L~~lf~ 284 (517)
...+-..+..+..|+.+. .++++.||||||||+++.+++.+ + | ....+..+-.+- -.+.+.
T Consensus 192 ~r~k~~~L~rl~~fve~~-----------~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L-~~~~lg 256 (449)
T TIGR02688 192 ARQKLLLLARLLPLVEPN-----------YNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNI-STRQIG 256 (449)
T ss_pred hHHHHHHHHhhHHHHhcC-----------CcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHH-HHHHHh
Confidence 344444455555666653 48999999999999999999776 2 3 112222221111 113334
Q ss_pred hccCCcEEEEccchhh
Q 010133 285 KTSSKSIIVIEDIDCS 300 (517)
Q Consensus 285 ~~~~~sII~iDdID~~ 300 (517)
......+|+|||+--+
T Consensus 257 ~v~~~DlLI~DEvgyl 272 (449)
T TIGR02688 257 LVGRWDVVAFDEVATL 272 (449)
T ss_pred hhccCCEEEEEcCCCC
Confidence 4457799999999874
No 333
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.19 E-value=0.00057 Score=76.10 Aligned_cols=62 Identities=19% Similarity=0.329 Sum_probs=41.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEEe-ecc---c----cChHHHHHHHHhc-----cCCcEEEEccchhh
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDLE-LTE---V----HNNSELRKLLMKT-----SSKSIIVIEDIDCS 300 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l~-l~~---~----~~~~~L~~lf~~~-----~~~sII~iDdID~~ 300 (517)
++||.|.||||||.|.+.+++-+-..+|.-- .++ + ..+...-+...++ ..++|.+|||+|.+
T Consensus 321 nILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm 395 (682)
T COG1241 321 HILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKM 395 (682)
T ss_pred eEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCC
Confidence 5899999999999999999999877777531 111 1 0011011111122 36899999999975
No 334
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.18 E-value=0.00099 Score=62.20 Aligned_cols=62 Identities=19% Similarity=0.288 Sum_probs=44.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccC-----------------------hHHHHHHHHhccCCcEEEEcc
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHN-----------------------NSELRKLLMKTSSKSIIVIED 296 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~-----------------------~~~L~~lf~~~~~~sII~iDd 296 (517)
+|+.||||+|||++|..+|...+.+++.+......+ ..+|.+.+...+.+.+|+||-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~VLIDc 81 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVVLIDC 81 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEEEEEc
Confidence 689999999999999999988777777775544321 123444444444567899998
Q ss_pred chhhh
Q 010133 297 IDCSI 301 (517)
Q Consensus 297 ID~~~ 301 (517)
+...+
T Consensus 82 lt~~~ 86 (169)
T cd00544 82 LTLWV 86 (169)
T ss_pred HhHHH
Confidence 88764
No 335
>PF06431 Polyoma_lg_T_C: Polyomavirus large T antigen C-terminus; InterPro: IPR010932 The group of polyomaviruses is formed by the homonymous murine virus (Py) as well as other representative members such as the simian virus 40 (SV40) and the human BK and JC viruses []. Their large T antigen (T-ag) protein binds to and activates DNA replication from the origin of DNA replication (ori). Insofar as is known, the T-ag binds to the origin first as a monomer to its pentanucleotide recognition element. The monomers are then thought to assemble into hexamers and double hexamers, which constitute the form that is active in initiation of DNA replication. When bound to the ori, T-ag double hexamers encircle DNA []. T-ag is a multidomain protein that contains an N-terminal J domain, which mediates protein interactions (see PDOC00553 from PROSITEDOC, IPR001623 from INTERPRO), a central origin-binding domain (OBD), and a C-terminal superfamily 3 helicase domain (see PDOC51206 from PROSITEDOC, IPR010932 from INTERPRO) []. This entry represents the helicase domain of LTag, which assembles into a hexameric structure containing a positively charged central channel that can bind both single- and double-stranded DNA []. ATP binding and hydrolysis trigger large conformational changes which are thought to be coupled to the melting of origin DNA and the unwinding of duplex DNA []. These conformational changes cause the angles and orientations between regions of a monomer to alter, creating what was described as an "iris"-like motion in the hexamer. In addition to this, six beta hairpins on the channel surface move longitudinally along the central channel, possibly serving as a motor for pulling DNA into the LTag double hexamer for unwinding.; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 2H1L_H 1SVO_A 1SVM_E 1SVL_B 1N25_A 4E2I_K.
Probab=97.18 E-value=0.0019 Score=66.22 Aligned_cols=137 Identities=21% Similarity=0.224 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccChHHHHHHHHhccCCcEE
Q 010133 213 IEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNNSELRKLLMKTSSKSII 292 (517)
Q Consensus 213 ~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~~~~L~~lf~~~~~~sII 292 (517)
+.|.+.|.....+ +|.+|.+||-||-.|||||||+||-+.+|-....+|+..- .|.-=+.-+-..-.|
T Consensus 139 ~~i~~iL~~lv~N--------~PKkRy~lFkGPvNsGKTTlAAAlLdL~gG~~LNvN~p~d----kl~FELG~AiDQfmV 206 (417)
T PF06431_consen 139 DVILEILKCLVEN--------IPKKRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPD----KLNFELGCAIDQFMV 206 (417)
T ss_dssp HHHHHHHHHHHHT--------BTTB-EEEEE-STTSSHHHHHHHHHHHH-EEEE-TSS-TT----THHHHHCCCTT-SEE
T ss_pred HHHHHHHHHHhcC--------CCcceeEEEecCcCCchHHHHHHHHHhcCCceeecCCChh----hcchhhheeeceEEE
Confidence 3444545555544 6888999999999999999999999999988777777543 343334444567889
Q ss_pred EEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccC-------CCce
Q 010133 293 VIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCC-------GSEK 365 (517)
Q Consensus 293 ~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~-------~~~~ 365 (517)
++||+-- +... ...=..+..-..|..|-..|||-..-. ....
T Consensus 207 vFEDVKG------q~~~-------------------------~~~Lp~G~G~~NLDNLRD~LDG~V~VNLErKH~NK~sQ 255 (417)
T PF06431_consen 207 VFEDVKG------QPSD-------------------------NKDLPPGQGMNNLDNLRDYLDGAVKVNLERKHQNKRSQ 255 (417)
T ss_dssp EEEEE--------SSTT-------------------------TTT----SHHHHHHTTHHHHH-SS-EEEECSSSEEEEE
T ss_pred EEEecCC------CcCC-------------------------CCCCCCCCCcccchhhhhhccCceeechhhhhcccccc
Confidence 9999853 1100 000012334567778888889863110 0011
Q ss_pred E---EEEEeCCCCCCChhhhccCCceeeEeccC
Q 010133 366 I---FVFTTNHIEKLDPALLRSGRMDMHIFMSY 395 (517)
Q Consensus 366 i---iI~TTN~~e~LD~ALlRpGR~d~~I~~~~ 395 (517)
| -|+|.|.- .|+..+.- ||-..+.|..
T Consensus 256 iFPPgIvTmNeY-~iP~Tv~v--Rf~~~~~F~~ 285 (417)
T PF06431_consen 256 IFPPGIVTMNEY-KIPQTVKV--RFCKVLDFRP 285 (417)
T ss_dssp ----EEEEESS--B--HHHHT--TEEEEEE---
T ss_pred cCCCceEeeccc-cCCcceee--eeEeeEeccc
Confidence 2 47788863 67888888 9998888865
No 336
>PRK05973 replicative DNA helicase; Provisional
Probab=97.17 E-value=0.0023 Score=62.97 Aligned_cols=39 Identities=23% Similarity=0.070 Sum_probs=30.5
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeec
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELT 271 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~ 271 (517)
|++...-+|+.|+||+|||+|+..+|.+. |.+++.+++.
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 66767779999999999999998876544 7676666554
No 337
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.17 E-value=0.0038 Score=61.94 Aligned_cols=25 Identities=28% Similarity=0.551 Sum_probs=22.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGY 263 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~ 263 (517)
-++|.||||||||+|++.|++.+..
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhcccc
Confidence 4899999999999999999998754
No 338
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.17 E-value=0.00034 Score=63.88 Aligned_cols=28 Identities=29% Similarity=0.585 Sum_probs=25.9
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCCceEE
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGYDIYD 267 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~~i~~ 267 (517)
+-+.|||||||||+++-||.++|++++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5678999999999999999999999876
No 339
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.17 E-value=0.00037 Score=68.29 Aligned_cols=29 Identities=21% Similarity=0.527 Sum_probs=26.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCCceEEE
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGYDIYDL 268 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~~i~~l 268 (517)
++|.||||+||||+++.||..++++++.+
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 89999999999999999999999776543
No 340
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.16 E-value=0.00063 Score=53.60 Aligned_cols=30 Identities=30% Similarity=0.506 Sum_probs=24.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHHh-CCceEEEe
Q 010133 240 YLLYGPPGTGKSSMIAAMANYL-GYDIYDLE 269 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l-~~~i~~l~ 269 (517)
+.+.|+||+|||+++++++..+ +.++..++
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~ 32 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLD 32 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEe
Confidence 5789999999999999999997 34444443
No 341
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.16 E-value=0.001 Score=66.20 Aligned_cols=69 Identities=14% Similarity=0.289 Sum_probs=55.8
Q ss_pred hCCCCCcceEEeCCCCCcHHHHHHHHH------HHhCCceEEEeeccccChHHHHHHHHhc-----------------cC
Q 010133 232 TGRAWKRGYLLYGPPGTGKSSMIAAMA------NYLGYDIYDLELTEVHNNSELRKLLMKT-----------------SS 288 (517)
Q Consensus 232 ~G~~~~rg~LL~GpPGTGKTsla~alA------~~l~~~i~~l~l~~~~~~~~L~~lf~~~-----------------~~ 288 (517)
+.+..+-++||.||.|.|||.|++-|- +.+.-+|+.+||..+..+..+..+|... ..
T Consensus 203 va~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsad 282 (531)
T COG4650 203 VAIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSAD 282 (531)
T ss_pred HHhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCC
Confidence 334445679999999999999999883 3567899999999998888888887542 24
Q ss_pred CcEEEEccchhh
Q 010133 289 KSIIVIEDIDCS 300 (517)
Q Consensus 289 ~sII~iDdID~~ 300 (517)
...+|+|||-.+
T Consensus 283 ggmlfldeigel 294 (531)
T COG4650 283 GGMLFLDEIGEL 294 (531)
T ss_pred CceEehHhhhhc
Confidence 689999999876
No 342
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.16 E-value=0.019 Score=56.22 Aligned_cols=124 Identities=13% Similarity=0.051 Sum_probs=89.7
Q ss_pred ceEEeCCCC-CcHHHHHHHHHHHhC---------CceEEEeecc-------ccChHHHHHHHHh---cc---CCcEEEEc
Q 010133 239 GYLLYGPPG-TGKSSMIAAMANYLG---------YDIYDLELTE-------VHNNSELRKLLMK---TS---SKSIIVIE 295 (517)
Q Consensus 239 g~LL~GpPG-TGKTsla~alA~~l~---------~~i~~l~l~~-------~~~~~~L~~lf~~---~~---~~sII~iD 295 (517)
.|||.|..+ +||.-++.-++..+. -+++.+.-.. .-+-+.+|.+... .+ ..-|++|+
T Consensus 17 AYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViII~ 96 (263)
T PRK06581 17 SWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAIIY 96 (263)
T ss_pred eeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEEEe
Confidence 699999998 999999988877662 3455553221 1234455555443 22 45699999
Q ss_pred cchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCC
Q 010133 296 DIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIE 375 (517)
Q Consensus 296 dID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e 375 (517)
++|.+ .....+.||..++.- +...++|.+|..++
T Consensus 97 ~ae~m------------------------------------------t~~AANALLKtLEEP----P~~t~fILit~~~~ 130 (263)
T PRK06581 97 SAELM------------------------------------------NLNAANSCLKILEDA----PKNSYIFLITSRAA 130 (263)
T ss_pred chHHh------------------------------------------CHHHHHHHHHhhcCC----CCCeEEEEEeCChh
Confidence 99987 334678889888874 34578888899999
Q ss_pred CCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCC
Q 010133 376 KLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGY 411 (517)
Q Consensus 376 ~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~ 411 (517)
.|.|.++. |+ .++.+..|......++...++..
T Consensus 131 ~LLpTIrS--RC-q~i~~~~p~~~~~~e~~~~~~~p 163 (263)
T PRK06581 131 SIISTIRS--RC-FKINVRSSILHAYNELYSQFIQP 163 (263)
T ss_pred hCchhHhh--ce-EEEeCCCCCHHHHHHHHHHhccc
Confidence 99999998 87 78899999887776666655543
No 343
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.15 E-value=0.00041 Score=65.05 Aligned_cols=28 Identities=21% Similarity=0.469 Sum_probs=24.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceE
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIY 266 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~ 266 (517)
-+++.||||+||||+++.||..+|+..+
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~ 32 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHL 32 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 4789999999999999999999986654
No 344
>PRK02496 adk adenylate kinase; Provisional
Probab=97.14 E-value=0.00037 Score=65.59 Aligned_cols=29 Identities=28% Similarity=0.521 Sum_probs=25.8
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCCceEEE
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGYDIYDL 268 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~~i~~l 268 (517)
+++.||||+|||++++.||..++++.+..
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 89999999999999999999998766543
No 345
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.13 E-value=0.0063 Score=55.77 Aligned_cols=23 Identities=30% Similarity=0.664 Sum_probs=21.6
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l 261 (517)
-+++.||||+|||+++.-+|+.+
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHH
Confidence 48999999999999999999888
No 346
>PRK14528 adenylate kinase; Provisional
Probab=97.13 E-value=0.00042 Score=65.63 Aligned_cols=29 Identities=24% Similarity=0.521 Sum_probs=26.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEE
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYD 267 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~ 267 (517)
.+++.||||+|||++++.||..++++.+.
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is 31 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIS 31 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 48999999999999999999999987654
No 347
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=97.13 E-value=0.003 Score=72.54 Aligned_cols=62 Identities=15% Similarity=0.386 Sum_probs=38.9
Q ss_pred cceEEeCCCCCcHHHHHHHHHHH-----hCCce----------EEEeeccccC--------------hHHHHHHHHhccC
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANY-----LGYDI----------YDLELTEVHN--------------NSELRKLLMKTSS 288 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~-----l~~~i----------~~l~l~~~~~--------------~~~L~~lf~~~~~ 288 (517)
+.++|.||.+.|||++.+.++-. .|+++ ++--++.+.+ -..+..++..+..
T Consensus 328 ~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~Il~~~~~ 407 (782)
T PRK00409 328 TVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRILEKADK 407 (782)
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEEEecCCccchhhchhHHHHHHHHHHHHHHhCCc
Confidence 57899999999999999988533 24322 2111111211 1123344455568
Q ss_pred CcEEEEccchh
Q 010133 289 KSIIVIEDIDC 299 (517)
Q Consensus 289 ~sII~iDdID~ 299 (517)
+++|+|||+-.
T Consensus 408 ~sLvLlDE~~~ 418 (782)
T PRK00409 408 NSLVLFDELGA 418 (782)
T ss_pred CcEEEecCCCC
Confidence 99999999975
No 348
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.13 E-value=0.0074 Score=64.58 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=28.3
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHh-----CCceEEEeecc
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYL-----GYDIYDLELTE 272 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l-----~~~i~~l~l~~ 272 (517)
.+-++|.||+|+||||++..||..+ +..+..+++..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 3468999999999999999998754 35677776654
No 349
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.12 E-value=0.00037 Score=65.21 Aligned_cols=31 Identities=29% Similarity=0.357 Sum_probs=27.0
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCceEEE
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYDL 268 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i~~l 268 (517)
+-++|.||||+||||++++++..++.+++.+
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~ 33 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHF 33 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCcccc
Confidence 4589999999999999999999998776544
No 350
>PF13245 AAA_19: Part of AAA domain
Probab=97.11 E-value=0.00068 Score=54.60 Aligned_cols=32 Identities=41% Similarity=0.759 Sum_probs=21.6
Q ss_pred eEEeCCCCCcHH-HHHHHHHHHh------CCceEEEeec
Q 010133 240 YLLYGPPGTGKS-SMIAAMANYL------GYDIYDLELT 271 (517)
Q Consensus 240 ~LL~GpPGTGKT-sla~alA~~l------~~~i~~l~l~ 271 (517)
+++.|||||||| ++++.++..+ +..+..+..+
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 455999999999 4555555555 4556666544
No 351
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.11 E-value=0.00033 Score=64.75 Aligned_cols=29 Identities=31% Similarity=0.690 Sum_probs=26.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCCceEEEe
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGYDIYDLE 269 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~~i~~l~ 269 (517)
++++|.|||||||++..|+ .+|++++.++
T Consensus 3 I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred EEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 7899999999999999999 9998877654
No 352
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.09 E-value=0.00049 Score=66.21 Aligned_cols=22 Identities=45% Similarity=0.853 Sum_probs=18.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHHh
Q 010133 240 YLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l 261 (517)
.++.||||||||+++.+++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8999999999998888776666
No 353
>PRK06547 hypothetical protein; Provisional
Probab=97.09 E-value=0.0005 Score=64.39 Aligned_cols=33 Identities=27% Similarity=0.537 Sum_probs=28.4
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHhCCceEEEe
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLE 269 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~ 269 (517)
+.-+++.||||||||++++.+|..++.+++.++
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 446889999999999999999999988776554
No 354
>PLN02199 shikimate kinase
Probab=97.09 E-value=0.0009 Score=67.50 Aligned_cols=46 Identities=33% Similarity=0.579 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEe
Q 010133 212 KIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLE 269 (517)
Q Consensus 212 k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~ 269 (517)
.+..-+.+..|+.+ +.++|.|++|||||++++.+|+.+++++++.|
T Consensus 89 Lk~~a~~i~~~l~~------------~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 89 LKRKAEEVKPYLNG------------RSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred HHHHHHHHHHHcCC------------CEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 33344556666654 47999999999999999999999999999876
No 355
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.09 E-value=0.0012 Score=67.90 Aligned_cols=66 Identities=32% Similarity=0.380 Sum_probs=46.7
Q ss_pred Ccc-cccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh-CCceEEEeeccc
Q 010133 201 TFD-TLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL-GYDIYDLELTEV 273 (517)
Q Consensus 201 ~f~-tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l-~~~i~~l~l~~~ 273 (517)
.|+ .+.|.++..+++++.+..-..+ +-.-++-+||.||+|+|||||+..|-+.+ .+++|.+..+.+
T Consensus 58 ~f~~~~~G~~~~i~~lV~~fk~AA~g-------~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm 125 (358)
T PF08298_consen 58 FFEDEFYGMEETIERLVNYFKSAAQG-------LEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPM 125 (358)
T ss_pred CccccccCcHHHHHHHHHHHHHHHhc-------cCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCcc
Confidence 356 7888888876665533332222 23446678999999999999999998877 568888754444
No 356
>PF13479 AAA_24: AAA domain
Probab=97.05 E-value=0.00078 Score=65.21 Aligned_cols=58 Identities=24% Similarity=0.429 Sum_probs=37.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecc---------------ccChHHHHHHHHhc----cCCcEEEEccchh
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTE---------------VHNNSELRKLLMKT----SSKSIIVIEDIDC 299 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~---------------~~~~~~L~~lf~~~----~~~sII~iDdID~ 299 (517)
-+|||||||+|||+++..+ +- .+.|++.. +.+-.++...+... ..--+||||-|+.
T Consensus 5 ~~lIyG~~G~GKTt~a~~~----~k-~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~ 79 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASL----PK-PLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISW 79 (213)
T ss_pred EEEEECCCCCCHHHHHHhC----CC-eEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHH
Confidence 4899999999999999887 22 22222211 12344555655432 3557999999998
Q ss_pred hh
Q 010133 300 SI 301 (517)
Q Consensus 300 ~~ 301 (517)
+.
T Consensus 80 ~~ 81 (213)
T PF13479_consen 80 LE 81 (213)
T ss_pred HH
Confidence 74
No 357
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.05 E-value=0.0017 Score=66.62 Aligned_cols=40 Identities=10% Similarity=0.029 Sum_probs=29.7
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHH---------hCCceEEEeecc
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANY---------LGYDIYDLELTE 272 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~---------l~~~i~~l~l~~ 272 (517)
|++...-++++||||||||.|+..+|-. .+..++.++...
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 7787778999999999999999877632 234566665443
No 358
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.04 E-value=0.0088 Score=62.82 Aligned_cols=60 Identities=23% Similarity=0.278 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeecc
Q 010133 209 PEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTE 272 (517)
Q Consensus 209 ~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~ 272 (517)
.+.+..+++.+..++.....+ ...++-++|.||+|+||||++..||..+ +..+..+++..
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~----~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt 279 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVF----EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDH 279 (436)
T ss_pred HHHHHHHHHHHHHHhcccccc----ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCC
Confidence 345666666666666543222 1124578999999999999999999877 45566555543
No 359
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.04 E-value=0.00052 Score=66.16 Aligned_cols=28 Identities=32% Similarity=0.617 Sum_probs=25.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCCceEE
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGYDIYD 267 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~~i~~ 267 (517)
+++.||||+|||++++.||..+|+..+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 7899999999999999999999876654
No 360
>PLN02200 adenylate kinase family protein
Probab=97.03 E-value=0.00064 Score=66.87 Aligned_cols=34 Identities=21% Similarity=0.459 Sum_probs=27.6
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccc
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEV 273 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~ 273 (517)
.-+++.||||||||++++.||..+|+. .++++++
T Consensus 44 ~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdl 77 (234)
T PLN02200 44 FITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDL 77 (234)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHH
Confidence 458899999999999999999999865 3444443
No 361
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.03 E-value=0.024 Score=66.22 Aligned_cols=33 Identities=27% Similarity=0.325 Sum_probs=27.3
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCceEEEeec
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELT 271 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~ 271 (517)
+-++++||+|.|||+++...+...+ ++.-+++.
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~ 65 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLD 65 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecC
Confidence 4689999999999999999887777 66666654
No 362
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.02 E-value=0.00058 Score=66.11 Aligned_cols=28 Identities=32% Similarity=0.590 Sum_probs=25.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCCceEE
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGYDIYD 267 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~~i~~ 267 (517)
++++||||+|||++++.||..+++..+.
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is 30 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIS 30 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 8999999999999999999999976655
No 363
>PRK13695 putative NTPase; Provisional
Probab=97.01 E-value=0.0072 Score=56.32 Aligned_cols=22 Identities=36% Similarity=0.774 Sum_probs=20.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHHh
Q 010133 240 YLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l 261 (517)
++|.|+||+|||||++.+++.+
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998776
No 364
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.01 E-value=0.0018 Score=59.18 Aligned_cols=25 Identities=40% Similarity=0.627 Sum_probs=22.3
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~ 262 (517)
.-+.|.||+|+|||+|+++|++.+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3588999999999999999998764
No 365
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.01 E-value=0.0027 Score=63.77 Aligned_cols=25 Identities=28% Similarity=0.577 Sum_probs=23.0
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~ 262 (517)
.++++.||||+|||||.+++|+.+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 4799999999999999999999874
No 366
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=97.00 E-value=0.00074 Score=70.67 Aligned_cols=46 Identities=26% Similarity=0.528 Sum_probs=37.5
Q ss_pred CcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCc
Q 010133 201 TFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYD 264 (517)
Q Consensus 201 ~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~ 264 (517)
++++-.+++.+++++.+. .+|+|+-||||.||||+|+|+|.++.-.
T Consensus 245 ~ledY~L~dkl~eRL~er------------------aeGILIAG~PGaGKsTFaqAlAefy~~~ 290 (604)
T COG1855 245 SLEDYGLSDKLKERLEER------------------AEGILIAGAPGAGKSTFAQALAEFYASQ 290 (604)
T ss_pred chhhcCCCHHHHHHHHhh------------------hcceEEecCCCCChhHHHHHHHHHHHhc
Confidence 577888888887777551 2599999999999999999999988433
No 367
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.99 E-value=0.0052 Score=64.08 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=21.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhC
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~ 262 (517)
.|+.||||||||+|++.+|+.+.
T Consensus 136 ~LIvG~pGtGKTTLl~~la~~i~ 158 (380)
T PRK12608 136 GLIVAPPRAGKTVLLQQIAAAVA 158 (380)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 69999999999999999999873
No 368
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.99 E-value=0.017 Score=56.84 Aligned_cols=56 Identities=20% Similarity=0.217 Sum_probs=38.9
Q ss_pred HHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcC
Q 010133 346 TLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLG 410 (517)
Q Consensus 346 ~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~ 410 (517)
.+..+++. |-. -+.-+|+.+...-.|||.++. -++..+.+. -+..+++.|++.+..
T Consensus 116 ~l~~~~~~--gRH----~~is~i~l~Q~~~~lp~~iR~--n~~y~i~~~-~s~~dl~~i~~~~~~ 171 (241)
T PF04665_consen 116 ILRQFFNN--GRH----YNISIIFLSQSYFHLPPNIRS--NIDYFIIFN-NSKRDLENIYRNMNI 171 (241)
T ss_pred HHHHHHhc--ccc----cceEEEEEeeecccCCHHHhh--cceEEEEec-CcHHHHHHHHHhccc
Confidence 46666652 221 235677788778889999876 788888775 477778888887754
No 369
>PRK04182 cytidylate kinase; Provisional
Probab=96.98 E-value=0.00065 Score=63.19 Aligned_cols=28 Identities=32% Similarity=0.630 Sum_probs=26.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCCceEE
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGYDIYD 267 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~~i~~ 267 (517)
++|.|+||||||+++++||..+++++++
T Consensus 3 I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 7899999999999999999999998775
No 370
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.97 E-value=0.00074 Score=64.62 Aligned_cols=34 Identities=35% Similarity=0.631 Sum_probs=26.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecc
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTE 272 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~ 272 (517)
-|+++||+|||||.++-++|+.+|.+++.+|--.
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq 36 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQ 36 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEeccee
Confidence 3899999999999999999999999999887443
No 371
>PRK14527 adenylate kinase; Provisional
Probab=96.96 E-value=0.00064 Score=64.51 Aligned_cols=30 Identities=30% Similarity=0.602 Sum_probs=26.0
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCceEE
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYD 267 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i~~ 267 (517)
.-++++||||+||||+++.||..+++..+.
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 358999999999999999999999876543
No 372
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.96 E-value=0.0016 Score=66.53 Aligned_cols=29 Identities=28% Similarity=0.437 Sum_probs=24.3
Q ss_pred CCCCcceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 234 RAWKRGYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 234 ~~~~rg~LL~GpPGTGKTsla~alA~~l~ 262 (517)
-+.++|+.||||-|.|||.|.-..-..+-
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp 90 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLP 90 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCC
Confidence 34578999999999999999988766654
No 373
>PRK09354 recA recombinase A; Provisional
Probab=96.95 E-value=0.0035 Score=64.97 Aligned_cols=69 Identities=16% Similarity=0.310 Sum_probs=44.1
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHH---hCCceEEEeecccc---------------------ChHHHHHH---HHh
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANY---LGYDIYDLELTEVH---------------------NNSELRKL---LMK 285 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~---l~~~i~~l~l~~~~---------------------~~~~L~~l---f~~ 285 (517)
|+|..+-+++|||||||||+|+..++.. .+..++.++...-. +......+ +..
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 6787778999999999999999876433 35555555443311 11111111 122
Q ss_pred ccCCcEEEEccchhhh
Q 010133 286 TSSKSIIVIEDIDCSI 301 (517)
Q Consensus 286 ~~~~sII~iDdID~~~ 301 (517)
.....+||||-|-++.
T Consensus 136 s~~~~lIVIDSvaaL~ 151 (349)
T PRK09354 136 SGAVDLIVVDSVAALV 151 (349)
T ss_pred cCCCCEEEEeChhhhc
Confidence 2467899999998874
No 374
>PRK13764 ATPase; Provisional
Probab=96.95 E-value=0.0025 Score=70.58 Aligned_cols=26 Identities=38% Similarity=0.774 Sum_probs=23.8
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l~ 262 (517)
+.++|++|||||||||+++||++++.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999998884
No 375
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.95 E-value=0.0014 Score=65.81 Aligned_cols=61 Identities=23% Similarity=0.415 Sum_probs=34.4
Q ss_pred eEEeCCCCCcHHHHHHHHHHHh---CCceEEEeecccc----------ChHHHHHHHHh-----ccCCcEEEEccchhh
Q 010133 240 YLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVH----------NNSELRKLLMK-----TSSKSIIVIEDIDCS 300 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~----------~~~~L~~lf~~-----~~~~sII~iDdID~~ 300 (517)
++|+|.||+|||++|+.|+.++ +..+..++-..+. .+..++..+.. .....||++||.--+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchH
Confidence 7899999999999999999886 5677776643331 12334433322 245689999988754
No 376
>PRK06696 uridine kinase; Validated
Probab=96.95 E-value=0.0023 Score=62.34 Aligned_cols=41 Identities=17% Similarity=0.319 Sum_probs=33.0
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccccChH
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVHNNS 277 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~~~~ 277 (517)
+.-+.+.|+||+||||||+.||..+ |.+++.+++.++....
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~ 65 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPR 65 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCH
Confidence 3457889999999999999999999 6778777777664433
No 377
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.94 E-value=0.00059 Score=59.48 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=21.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHHh
Q 010133 240 YLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l 261 (517)
++|.|+|||||||+++.|+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999998
No 378
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.94 E-value=0.0029 Score=65.67 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=23.2
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHH
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMA 258 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA 258 (517)
|++...-+.|+||||||||.|+..+|
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqla 147 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLC 147 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHH
Confidence 77777778999999999999998876
No 379
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.93 E-value=0.003 Score=60.39 Aligned_cols=27 Identities=33% Similarity=0.341 Sum_probs=23.3
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHH
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMAN 259 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~ 259 (517)
|+|.+.=+|+.|+.|||||-|.+.+|-
T Consensus 24 GiP~GsL~lIEGd~~tGKSvLsqr~~Y 50 (235)
T COG2874 24 GIPVGSLILIEGDNGTGKSVLSQRFAY 50 (235)
T ss_pred CCccCeEEEEECCCCccHHHHHHHHHH
Confidence 577777789999999999999999864
No 380
>PTZ00035 Rad51 protein; Provisional
Probab=96.93 E-value=0.0036 Score=64.91 Aligned_cols=28 Identities=21% Similarity=0.184 Sum_probs=24.4
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHH
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~ 260 (517)
|++...-+.++||||||||+|+..+|..
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~ 141 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVT 141 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHH
Confidence 7777777899999999999999988753
No 381
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.92 E-value=0.002 Score=64.16 Aligned_cols=51 Identities=25% Similarity=0.273 Sum_probs=39.3
Q ss_pred hCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccccChHHHHHHHH
Q 010133 232 TGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVHNNSELRKLLM 284 (517)
Q Consensus 232 ~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~~~~~L~~lf~ 284 (517)
-|+|..+.+|++|+||||||+|+...+... |.+++.++..+ +...+.+.+.
T Consensus 18 GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e--~~~~l~~~~~ 71 (260)
T COG0467 18 GGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE--SPEELLENAR 71 (260)
T ss_pred CCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC--CHHHHHHHHH
Confidence 478888899999999999999998875544 77888888766 4455555544
No 382
>PRK01184 hypothetical protein; Provisional
Probab=96.90 E-value=0.00082 Score=63.20 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=24.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEE
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDL 268 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l 268 (517)
-++|+||||+||||+++ +|.++|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 37899999999999887 888888777543
No 383
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.90 E-value=0.0028 Score=57.42 Aligned_cols=63 Identities=16% Similarity=0.285 Sum_probs=39.6
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCC---ceE-----EEee-ccccChHHHHHHH---HhccCCcEEEEccchhhh
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGY---DIY-----DLEL-TEVHNNSELRKLL---MKTSSKSIIVIEDIDCSI 301 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~---~i~-----~l~l-~~~~~~~~L~~lf---~~~~~~sII~iDdID~~~ 301 (517)
..+.|.||+|+|||||+++|++.... .++ .+.. ..+ +....+++. .-..+|.++++||-..-+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~l-S~G~~~rv~laral~~~p~illlDEP~~~L 101 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQL-SGGEKMRLALAKLLLENPNLLLLDEPTNHL 101 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccC-CHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 35889999999999999999997631 111 0110 112 333333332 223588999999987643
No 384
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.89 E-value=0.00072 Score=62.33 Aligned_cols=26 Identities=38% Similarity=0.747 Sum_probs=20.5
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCCceE
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGYDIY 266 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~~i~ 266 (517)
|.|+|+||||||||+++||.. |++++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 689999999999999999998 76644
No 385
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.89 E-value=0.0012 Score=60.31 Aligned_cols=30 Identities=37% Similarity=0.610 Sum_probs=25.5
Q ss_pred eEEeCCCCCcHHHHHHHHHHHh---CCceEEEe
Q 010133 240 YLLYGPPGTGKSSMIAAMANYL---GYDIYDLE 269 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l---~~~i~~l~ 269 (517)
++++|+||+|||++++.|+..+ +.+.+.++
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~ 34 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLD 34 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 6899999999999999999998 65555554
No 386
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.88 E-value=0.06 Score=55.24 Aligned_cols=23 Identities=22% Similarity=0.059 Sum_probs=18.3
Q ss_pred eEeccCCCHHHHHHHHHHhcCCC
Q 010133 390 HIFMSYCSYPALLILLKNYLGYE 412 (517)
Q Consensus 390 ~I~~~~p~~e~~~~l~~~~l~~~ 412 (517)
.|+++..+.++.+.++..|....
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~ 280 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSG 280 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCC
Confidence 67888889999999998886443
No 387
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.88 E-value=0.00094 Score=62.88 Aligned_cols=30 Identities=40% Similarity=0.764 Sum_probs=24.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEEee
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDLEL 270 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l~l 270 (517)
-+++.||||+||||+|+.||+.++ +..++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~--i~hlst 31 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG--LPHLDT 31 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CcEEcH
Confidence 378999999999999999999954 444443
No 388
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.87 E-value=0.00064 Score=61.85 Aligned_cols=30 Identities=27% Similarity=0.646 Sum_probs=24.2
Q ss_pred EeCCCCCcHHHHHHHHHHHhCCceEEEeeccc
Q 010133 242 LYGPPGTGKSSMIAAMANYLGYDIYDLELTEV 273 (517)
Q Consensus 242 L~GpPGTGKTsla~alA~~l~~~i~~l~l~~~ 273 (517)
|.||||+|||++++.||..+|+. .+++.++
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~--~is~~~l 30 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLV--HISVGDL 30 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSE--EEEHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcc--eechHHH
Confidence 68999999999999999999764 4444443
No 389
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.87 E-value=0.00094 Score=61.60 Aligned_cols=29 Identities=28% Similarity=0.592 Sum_probs=26.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCCceEEE
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGYDIYDL 268 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~~i~~l 268 (517)
+.++|+||+|||++++.+|+.++++++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 68999999999999999999999887653
No 390
>PRK10646 ADP-binding protein; Provisional
Probab=96.86 E-value=0.0076 Score=55.17 Aligned_cols=82 Identities=20% Similarity=0.358 Sum_probs=53.0
Q ss_pred ChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC--------------------ceEE
Q 010133 208 DPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY--------------------DIYD 267 (517)
Q Consensus 208 ~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~--------------------~i~~ 267 (517)
+++..+++-+.+...++.. .-++|.|+=|+|||+|++++|..+|. ++|-
T Consensus 10 s~~~t~~l~~~la~~l~~g-----------~vi~L~GdLGaGKTtf~rgl~~~Lg~~~~V~SPTFtlv~~Y~~~~~~l~H 78 (153)
T PRK10646 10 DEQATLDLGARVAKACDGA-----------TVIYLYGDLGAGKTTFSRGFLQALGHQGNVKSPTYTLVEPYTLDNLMVYH 78 (153)
T ss_pred CHHHHHHHHHHHHHhCCCC-----------cEEEEECCCCCCHHHHHHHHHHHcCCCCCCCCCCEeeEEEeeCCCCCEEE
Confidence 4455556656565555441 24899999999999999999999864 2444
Q ss_pred EeeccccChHHHHHH-HHhc-cCCcEEEEccchhh
Q 010133 268 LELTEVHNNSELRKL-LMKT-SSKSIIVIEDIDCS 300 (517)
Q Consensus 268 l~l~~~~~~~~L~~l-f~~~-~~~sII~iDdID~~ 300 (517)
+|+-.+.+..++..+ |.+. ....|++||=-|.+
T Consensus 79 ~DlYRL~~~~el~~lG~~e~~~~~~i~~IEW~e~~ 113 (153)
T PRK10646 79 FDLYRLADPEELEFMGIRDYFANDAICLVEWPQQG 113 (153)
T ss_pred EeeccCCCHHHHHHcchHHhhcCCCEEEEECCcch
Confidence 555555555555443 3332 34678888765543
No 391
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.86 E-value=0.0023 Score=55.47 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=20.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l 261 (517)
+++++||||+|||.++.+.+..+
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 68999999999999888876655
No 392
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.86 E-value=0.011 Score=63.23 Aligned_cols=63 Identities=17% Similarity=0.177 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccc
Q 010133 210 EKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEV 273 (517)
Q Consensus 210 ~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~ 273 (517)
...+.+.+.+...+.......... ..|+-++|+||||+||||++..+|..+ |..+..+++...
T Consensus 69 ~~~~~v~~~L~~~l~~~~~~~~~~-~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 69 HVIKIVYEELVKLLGEETEPLVLP-LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred HHHHHHHHHHHHHhCCCccccccC-CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 344555566666555432111111 235679999999999999999999887 567777776654
No 393
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.85 E-value=0.0043 Score=60.55 Aligned_cols=62 Identities=27% Similarity=0.416 Sum_probs=41.0
Q ss_pred cceEEeCCCCCcHHHHHHHHHH-Hh----CCce---------EEEeecccc--------------ChHHHHHHHHhccCC
Q 010133 238 RGYLLYGPPGTGKSSMIAAMAN-YL----GYDI---------YDLELTEVH--------------NNSELRKLLMKTSSK 289 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~-~l----~~~i---------~~l~l~~~~--------------~~~~L~~lf~~~~~~ 289 (517)
+-++|.||.|+|||++.+.++. .+ |..+ +.-=++.+. .-.++..++..+..+
T Consensus 32 ~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~~ 111 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCTSR 111 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCCCC
Confidence 4589999999999999999987 22 2211 100001110 113456667778899
Q ss_pred cEEEEccchh
Q 010133 290 SIIVIEDIDC 299 (517)
Q Consensus 290 sII~iDdID~ 299 (517)
++++|||+-.
T Consensus 112 sLvllDE~~~ 121 (222)
T cd03287 112 SLVILDELGR 121 (222)
T ss_pred eEEEEccCCC
Confidence 9999999975
No 394
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.84 E-value=0.0051 Score=64.67 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=21.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~ 262 (517)
-+++.||||||||+|+++|++.+.
T Consensus 170 ~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 170 RGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred EEEEECCCCCChhHHHHHHHHhhc
Confidence 389999999999999999999864
No 395
>PRK04040 adenylate kinase; Provisional
Probab=96.82 E-value=0.0011 Score=63.02 Aligned_cols=28 Identities=29% Similarity=0.582 Sum_probs=24.4
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHh--CCce
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYL--GYDI 265 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l--~~~i 265 (517)
.-++++|+|||||||+++.++..+ ++.+
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~ 32 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKI 32 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeE
Confidence 358899999999999999999999 5554
No 396
>PRK14526 adenylate kinase; Provisional
Probab=96.81 E-value=0.0012 Score=63.94 Aligned_cols=28 Identities=32% Similarity=0.689 Sum_probs=24.9
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCCceEE
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGYDIYD 267 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~~i~~ 267 (517)
++|.||||+||||+++.||..+++..+.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 7899999999999999999999876543
No 397
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.78 E-value=0.0014 Score=64.96 Aligned_cols=31 Identities=35% Similarity=0.521 Sum_probs=26.4
Q ss_pred eEEeCCCCCcHHHHHHHHHHHh---CCceEEEee
Q 010133 240 YLLYGPPGTGKSSMIAAMANYL---GYDIYDLEL 270 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l 270 (517)
++|+|+||+||||+|+++|.++ +.+++.++.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~ 35 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT 35 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc
Confidence 6899999999999999999988 466666654
No 398
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.78 E-value=0.0019 Score=62.77 Aligned_cols=41 Identities=24% Similarity=0.390 Sum_probs=30.4
Q ss_pred hCCCCCcceEEeCCCCCcHHHHHHHHHHHh----CCceEEEeecc
Q 010133 232 TGRAWKRGYLLYGPPGTGKSSMIAAMANYL----GYDIYDLELTE 272 (517)
Q Consensus 232 ~G~~~~rg~LL~GpPGTGKTsla~alA~~l----~~~i~~l~l~~ 272 (517)
-|+|...-+|+.||||||||+|+..++... |.+++.+++.+
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee 58 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE 58 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC
Confidence 378888889999999999999998765322 77777776543
No 399
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.78 E-value=0.0077 Score=55.62 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=18.7
Q ss_pred cceEEeCCCCCcHHH-HHHHHHHHh
Q 010133 238 RGYLLYGPPGTGKSS-MIAAMANYL 261 (517)
Q Consensus 238 rg~LL~GpPGTGKTs-la~alA~~l 261 (517)
+.+++.||+|||||. ++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 479999999999999 555555544
No 400
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.76 E-value=0.0011 Score=67.19 Aligned_cols=29 Identities=28% Similarity=0.222 Sum_probs=24.4
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHh-CCceE
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYL-GYDIY 266 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l-~~~i~ 266 (517)
.-++|.|||||||||+++.||..+ +..++
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l 32 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNV 32 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEE
Confidence 358899999999999999999998 54443
No 401
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.76 E-value=0.0055 Score=58.59 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=19.5
Q ss_pred cceEEeCCCCCcHHHHHHHHH
Q 010133 238 RGYLLYGPPGTGKSSMIAAMA 258 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA 258 (517)
+-++|.||.|+|||+|.+.|+
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 359999999999999999988
No 402
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.76 E-value=0.087 Score=51.93 Aligned_cols=154 Identities=18% Similarity=0.213 Sum_probs=86.8
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCCc-eEE--EeeccccC--------------------------hHHHHHHHHhccCCc
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGYD-IYD--LELTEVHN--------------------------NSELRKLLMKTSSKS 290 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~~-i~~--l~l~~~~~--------------------------~~~L~~lf~~~~~~s 290 (517)
+.++|+-|||||.+.+|++..++-+ +.. ++-..+.. ...|..++.+-..|.
T Consensus 54 ~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v 133 (269)
T COG3267 54 LAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPV 133 (269)
T ss_pred EEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCCe
Confidence 5689999999999999887777433 222 22222211 122333344445679
Q ss_pred EEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEE
Q 010133 291 IIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFT 370 (517)
Q Consensus 291 II~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~T 370 (517)
++++||.+.+- ...-..+--|.|.-++... .-.+++|+
T Consensus 134 ~l~vdEah~L~---------------------------------------~~~le~Lrll~nl~~~~~~--~l~ivL~G- 171 (269)
T COG3267 134 VLMVDEAHDLN---------------------------------------DSALEALRLLTNLEEDSSK--LLSIVLIG- 171 (269)
T ss_pred EEeehhHhhhC---------------------------------------hhHHHHHHHHHhhcccccC--ceeeeecC-
Confidence 99999999762 1111223333333333211 11233443
Q ss_pred eCCCCCCCh--------hhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCC---CCChHhHHHHHHhhCCCCCCHHHHH
Q 010133 371 TNHIEKLDP--------ALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEES---DLEDETLKELEDVVGKAEMTPADIS 439 (517)
Q Consensus 371 TN~~e~LD~--------ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~---~~~~~~~~~i~~l~~~~~~spadi~ 439 (517)
+| +|.| .+.+ |++..|++++.+.++....++..++..+. -+++.....+.... .+ .|.-|.
T Consensus 172 --qp-~L~~~lr~~~l~e~~~--R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~s--qg-~P~lin 243 (269)
T COG3267 172 --QP-KLRPRLRLPVLRELEQ--RIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEAS--QG-IPRLIN 243 (269)
T ss_pred --Cc-ccchhhchHHHHhhhh--eEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHh--cc-chHHHH
Confidence 22 2333 2334 89888999999999888888887755432 23455566665553 22 666666
Q ss_pred HHHH
Q 010133 440 EVLI 443 (517)
Q Consensus 440 ~~l~ 443 (517)
+++-
T Consensus 244 ~~~~ 247 (269)
T COG3267 244 NLAT 247 (269)
T ss_pred HHHH
Confidence 6554
No 403
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.76 E-value=0.0023 Score=56.47 Aligned_cols=63 Identities=29% Similarity=0.380 Sum_probs=43.9
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCC--------------------ceEEEeeccccChHHHHHH--HHhccCCcEEEEc
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGY--------------------DIYDLELTEVHNNSELRKL--LMKTSSKSIIVIE 295 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~--------------------~i~~l~l~~~~~~~~L~~l--f~~~~~~sII~iD 295 (517)
.-++|+|+=|+|||+|++++|..+|. ++|-+|+-.+.+..++..+ +......+|++||
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~SPTF~l~~~Y~~~~~~l~H~DLYRl~~~~e~~~~g~~e~~~~~~i~~IE 95 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARALGIDEEVTSPTFSLVNEYEGGNIPLYHFDLYRLEDPEELEDLGLEEYLFEDGICVIE 95 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTT--S----TTTTSEEEEEETTEEEEEEE-TT-SSTHHHHHCTTTTCSSSSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCCCCcCCCCeEEEEEecCCCceEEEeeccccCCHHHHHHCCchhhhCCCCEEEEE
Confidence 45899999999999999999999854 3445566555565554443 2334568899998
Q ss_pred cchhh
Q 010133 296 DIDCS 300 (517)
Q Consensus 296 dID~~ 300 (517)
=-+.+
T Consensus 96 W~e~~ 100 (123)
T PF02367_consen 96 WPERL 100 (123)
T ss_dssp SGGGG
T ss_pred Ccccc
Confidence 66665
No 404
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.74 E-value=0.0018 Score=64.76 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=32.0
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeec
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELT 271 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~ 271 (517)
|+|...-+|++||||||||+|+..+|... |.+++.+++.
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 77888889999999999999999875543 6677777765
No 405
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=96.72 E-value=0.0024 Score=66.18 Aligned_cols=61 Identities=26% Similarity=0.461 Sum_probs=42.0
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccChHHHHHHHHhccCCcEEEEccchh
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNNSELRKLLMKTSSKSIIVIEDIDC 299 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~~~~L~~lf~~~~~~sII~iDdID~ 299 (517)
|+|.+..++|||||+||||+++..|-+.++-.++.. +.+.+. -.+.....--|-+|||.-.
T Consensus 258 g~PKKnClvi~GPPdTGKS~F~~SLi~Fl~GkViSf----~Ns~Sh--FWLqPL~d~Ki~llDDAT~ 318 (432)
T PF00519_consen 258 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISF----VNSKSH--FWLQPLADAKIALLDDATY 318 (432)
T ss_dssp TBTTSSEEEEESSCCCSHHHHHHHHHHHHTSEEE-G----GGTTSC--GGGGGGCT-SSEEEEEE-H
T ss_pred CCCcccEEEEECCCCCchhHHHHHHHHHhCCEEEEe----cCCCCc--ccccchhcCcEEEEcCCcc
Confidence 689999999999999999999999999998877642 111111 1122233446788888754
No 406
>PRK08233 hypothetical protein; Provisional
Probab=96.71 E-value=0.0016 Score=60.70 Aligned_cols=31 Identities=13% Similarity=0.198 Sum_probs=24.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC-CceEEEe
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG-YDIYDLE 269 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~-~~i~~l~ 269 (517)
-+.+.|+||+||||+++.||..++ ..++..+
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d 36 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLKNSKALYFD 36 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCceEEEC
Confidence 467889999999999999999885 3343333
No 407
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.70 E-value=0.0017 Score=62.13 Aligned_cols=28 Identities=32% Similarity=0.405 Sum_probs=24.9
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCce
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDI 265 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i 265 (517)
+-++++|+||+|||++++.+|..++..+
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 4689999999999999999999988643
No 408
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.70 E-value=0.0012 Score=62.30 Aligned_cols=29 Identities=31% Similarity=0.458 Sum_probs=25.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEE
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYD 267 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~ 267 (517)
-+.|.||+|+|||||++.||+.++.+++.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~~~~~~ 32 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQTQLLV 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence 58899999999999999999988866543
No 409
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.69 E-value=0.0017 Score=59.67 Aligned_cols=35 Identities=29% Similarity=0.481 Sum_probs=29.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccc
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEV 273 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~ 273 (517)
-++|.|.||+|||++|+++...| +.+++.++...+
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~l 41 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNL 41 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcch
Confidence 48899999999999999998877 778888876655
No 410
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.68 E-value=0.0053 Score=59.08 Aligned_cols=62 Identities=21% Similarity=0.308 Sum_probs=38.6
Q ss_pred cceEEeCCCCCcHHHHHHHHHHH-----hCCceEEE--------------eecc-cc--------ChHHHHHHHHhccCC
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANY-----LGYDIYDL--------------ELTE-VH--------NNSELRKLLMKTSSK 289 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~-----l~~~i~~l--------------~l~~-~~--------~~~~L~~lf~~~~~~ 289 (517)
+-++|.||.|+|||++.+.++.. +|..+... ...+ +. .-.++..++..+..+
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~~~~~~ 109 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILDYADGD 109 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHHHHHHHHHHHHHhcCCC
Confidence 45899999999999999998632 24332110 1100 00 012344445556789
Q ss_pred cEEEEccchh
Q 010133 290 SIIVIEDIDC 299 (517)
Q Consensus 290 sII~iDdID~ 299 (517)
++|+|||+..
T Consensus 110 ~lvllDE~~~ 119 (204)
T cd03282 110 SLVLIDELGR 119 (204)
T ss_pred cEEEeccccC
Confidence 9999999865
No 411
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.67 E-value=0.0062 Score=56.29 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=21.7
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHh
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l 261 (517)
.-+.|.||+|+|||||.+.|++..
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999999876
No 412
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.65 E-value=0.0027 Score=62.49 Aligned_cols=49 Identities=29% Similarity=0.334 Sum_probs=36.4
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHH---hCCceEEEeeccccChHHHHHHH
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANY---LGYDIYDLELTEVHNNSELRKLL 283 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~---l~~~i~~l~l~~~~~~~~L~~lf 283 (517)
|+|....+|++||||||||+|+..++.+ -|.+++.+++.. +...+.+-+
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC--CHHHHHHHH
Confidence 7888888999999999999999876543 377787777654 444444433
No 413
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.64 E-value=0.0055 Score=62.99 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=23.8
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHH
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMAN 259 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~ 259 (517)
|++...-+.++||||+|||+|+..+|.
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~ 118 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAV 118 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHH
Confidence 677777789999999999999998875
No 414
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.64 E-value=0.015 Score=58.30 Aligned_cols=87 Identities=18% Similarity=0.312 Sum_probs=50.7
Q ss_pred CCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhC---CceEEEe------
Q 010133 199 PSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLG---YDIYDLE------ 269 (517)
Q Consensus 199 p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~---~~i~~l~------ 269 (517)
+.+++++.+.++..+.+ ...+..+ ...+++.||+|+||||++.++..++. ..++.++
T Consensus 56 ~~~l~~lg~~~~~~~~l----~~~~~~~----------~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~ 121 (264)
T cd01129 56 ILDLEKLGLKPENLEIF----RKLLEKP----------HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ 121 (264)
T ss_pred CCCHHHcCCCHHHHHHH----HHHHhcC----------CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec
Confidence 34677888777765443 2222221 12479999999999999999987774 2344441
Q ss_pred eccc-----cC--hHHHHHHHHhc--cCCcEEEEccchh
Q 010133 270 LTEV-----HN--NSELRKLLMKT--SSKSIIVIEDIDC 299 (517)
Q Consensus 270 l~~~-----~~--~~~L~~lf~~~--~~~sII~iDdID~ 299 (517)
+..+ .. ......++..+ ..|.+|+|.||-.
T Consensus 122 ~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 122 IPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 1111 00 11123333222 4788999999853
No 415
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.63 E-value=0.0061 Score=63.25 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=23.3
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHH
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMAN 259 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~ 259 (517)
|++...-++++||||+|||.|+..+|-
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~ 145 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCV 145 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHH
Confidence 677777789999999999999987774
No 416
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.60 E-value=0.0057 Score=59.18 Aligned_cols=24 Identities=33% Similarity=0.729 Sum_probs=21.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~ 262 (517)
+.|+.|||||||||+.+-||..+.
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s 162 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLS 162 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhh
Confidence 578999999999999999998763
No 417
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.60 E-value=0.011 Score=55.76 Aligned_cols=61 Identities=16% Similarity=0.394 Sum_probs=38.5
Q ss_pred eEEeCCCCCcHHHHHHHHHH-----HhCCce---------EE-----Eeecccc---------ChHHHHHHHHhccCCcE
Q 010133 240 YLLYGPPGTGKSSMIAAMAN-----YLGYDI---------YD-----LELTEVH---------NNSELRKLLMKTSSKSI 291 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~-----~l~~~i---------~~-----l~l~~~~---------~~~~L~~lf~~~~~~sI 291 (517)
++|+||.|+|||++.++++- ..|..+ ++ +.+.+.. .-..+..++..+..|++
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 68999999999999999972 223322 11 1111100 01234455566678999
Q ss_pred EEEccchhh
Q 010133 292 IVIEDIDCS 300 (517)
Q Consensus 292 I~iDdID~~ 300 (517)
+++||+-.-
T Consensus 82 lllDEp~~g 90 (185)
T smart00534 82 VLLDELGRG 90 (185)
T ss_pred EEEecCCCC
Confidence 999999763
No 418
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.60 E-value=0.0098 Score=55.94 Aligned_cols=63 Identities=16% Similarity=0.247 Sum_probs=38.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCc--eEEEe---eccc-----cChHHHHHH-H--HhccCCcEEEEccchhhh
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYD--IYDLE---LTEV-----HNNSELRKL-L--MKTSSKSIIVIEDIDCSI 301 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~--i~~l~---l~~~-----~~~~~L~~l-f--~~~~~~sII~iDdID~~~ 301 (517)
-+.|.||.|+|||||++.|++.+... -+.++ +..+ -+....+++ + .-...|.++++||--.-+
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~L 102 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYL 102 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 47899999999999999999876211 11111 1111 122222222 1 123588999999987643
No 419
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.60 E-value=0.0044 Score=63.45 Aligned_cols=51 Identities=14% Similarity=0.214 Sum_probs=36.1
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHh---------CCceEEEeeccccChHHHHHHH
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYL---------GYDIYDLELTEVHNNSELRKLL 283 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l---------~~~i~~l~l~~~~~~~~L~~lf 283 (517)
|++...-++++||||||||+|+..+|-.. +-.++.++...--....+.+++
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~ 150 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMA 150 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHH
Confidence 67777778999999999999999887653 2367777765532344444443
No 420
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.59 E-value=0.0027 Score=59.19 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=22.8
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~ 262 (517)
.-++|.|+||+||||+++++++.+.
T Consensus 8 ~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4588999999999999999999886
No 421
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.58 E-value=0.0032 Score=64.25 Aligned_cols=26 Identities=23% Similarity=0.537 Sum_probs=23.3
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l~ 262 (517)
++++|+.||+|+||||+++||++++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 35899999999999999999998863
No 422
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.58 E-value=0.0069 Score=61.88 Aligned_cols=63 Identities=24% Similarity=0.395 Sum_probs=41.0
Q ss_pred CCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEE----EeeccccChHHHHHHHHhccCCcEEEEccchh
Q 010133 234 RAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYD----LELTEVHNNSELRKLLMKTSSKSIIVIEDIDC 299 (517)
Q Consensus 234 ~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~----l~l~~~~~~~~L~~lf~~~~~~sII~iDdID~ 299 (517)
.+...-++|+|+.|+|||+++..|..-+|-.... +.+..+... +--+.....+-+++.+|++.
T Consensus 73 ~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~~~~---~f~~a~l~gk~l~~~~E~~~ 139 (304)
T TIGR01613 73 YTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEFQEH---RFGLARLEGKRAVIGDEVQK 139 (304)
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhccCC---CchhhhhcCCEEEEecCCCC
Confidence 3456679999999999999999999888754321 112222110 11123345678899999874
No 423
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.58 E-value=0.0085 Score=57.33 Aligned_cols=63 Identities=21% Similarity=0.378 Sum_probs=39.4
Q ss_pred cceEEeCCCCCcHHHHHHHHHH-H----hCCceE--------------EEeeccc---------cChHHHHHHHHhccCC
Q 010133 238 RGYLLYGPPGTGKSSMIAAMAN-Y----LGYDIY--------------DLELTEV---------HNNSELRKLLMKTSSK 289 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~-~----l~~~i~--------------~l~l~~~---------~~~~~L~~lf~~~~~~ 289 (517)
+-++|.||.|+|||++.+.||. . .|..+. .++.... ..-..+..++.....|
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~~ 109 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEILSLATPR 109 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHHHHHHHHhccCC
Confidence 3589999999999999999983 2 232111 1111100 0012344445556789
Q ss_pred cEEEEccchhh
Q 010133 290 SIIVIEDIDCS 300 (517)
Q Consensus 290 sII~iDdID~~ 300 (517)
.++++||.-.-
T Consensus 110 ~llllDEp~~g 120 (202)
T cd03243 110 SLVLIDELGRG 120 (202)
T ss_pred eEEEEecCCCC
Confidence 99999999763
No 424
>PRK04328 hypothetical protein; Provisional
Probab=96.53 E-value=0.0061 Score=60.51 Aligned_cols=50 Identities=28% Similarity=0.314 Sum_probs=36.8
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHH---hCCceEEEeeccccChHHHHHHHH
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANY---LGYDIYDLELTEVHNNSELRKLLM 284 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~---l~~~i~~l~l~~~~~~~~L~~lf~ 284 (517)
|+|....+|++||||||||+|+..++.+ -|.+.+.+++.+ +...+.+.+.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee--~~~~i~~~~~ 71 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE--HPVQVRRNMR 71 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC--CHHHHHHHHH
Confidence 7888888999999999999999876533 367777777655 4444554443
No 425
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.52 E-value=0.0037 Score=58.06 Aligned_cols=36 Identities=33% Similarity=0.545 Sum_probs=31.1
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccc
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEV 273 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~ 273 (517)
.-++|.|.+|+||||+|.|++..| |+.+|.+|...+
T Consensus 24 ~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnv 62 (197)
T COG0529 24 AVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNV 62 (197)
T ss_pred eEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhH
Confidence 358899999999999999999887 888888886554
No 426
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.52 E-value=0.0076 Score=60.10 Aligned_cols=40 Identities=18% Similarity=0.232 Sum_probs=28.0
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHh---------CCceEEEeecc
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYL---------GYDIYDLELTE 272 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l---------~~~i~~l~l~~ 272 (517)
|++...-+=|+||||||||.|+..+|-.. +..++.+|...
T Consensus 34 Gi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~ 82 (256)
T PF08423_consen 34 GIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEG 82 (256)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSS
T ss_pred CCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCC
Confidence 45544344599999999999998887543 33467776554
No 427
>PLN02674 adenylate kinase
Probab=96.52 E-value=0.0025 Score=62.94 Aligned_cols=29 Identities=24% Similarity=0.464 Sum_probs=25.4
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCceE
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIY 266 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i~ 266 (517)
..++|.||||+||+|+++.||..+++..+
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~~~hi 60 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYCLCHL 60 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEE
Confidence 45999999999999999999999986543
No 428
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.51 E-value=0.0024 Score=59.98 Aligned_cols=29 Identities=31% Similarity=0.476 Sum_probs=25.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCCceEEEe
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGYDIYDLE 269 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~~i~~l~ 269 (517)
+.|+|+||+||||+++.+++ +|+++++.+
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D 30 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDAD 30 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEecC
Confidence 67999999999999999999 787776554
No 429
>PRK14529 adenylate kinase; Provisional
Probab=96.51 E-value=0.0021 Score=62.65 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=25.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCCceE
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGYDIY 266 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~~i~ 266 (517)
++|.||||+||||+++.||..++++.+
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~i 29 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHI 29 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCc
Confidence 789999999999999999999998765
No 430
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.51 E-value=0.0051 Score=64.22 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=22.1
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHh
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l 261 (517)
.-+++.|.||||||.|+-.+|..+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 358999999999999999999988
No 431
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.51 E-value=0.0033 Score=58.64 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=26.2
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHh---CCceEEEee
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLEL 270 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l 270 (517)
.-+.|.|+||+|||+++++||..+ +.+++.++.
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~ 40 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDG 40 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcC
Confidence 358899999999999999999987 434555543
No 432
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=96.50 E-value=0.0027 Score=70.14 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=29.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEEee
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDLEL 270 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l~l 270 (517)
.+.|.|.||+||||+.+.+|..++++|+++|-
T Consensus 8 ~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~ 39 (542)
T PRK14021 8 QAVIIGMMGAGKTRVGKEVAQMMRLPFADADV 39 (542)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence 47899999999999999999999999999863
No 433
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.50 E-value=0.0055 Score=66.79 Aligned_cols=51 Identities=18% Similarity=0.159 Sum_probs=38.5
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHH----hCCceEEEeeccccChHHHHHHHHh
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANY----LGYDIYDLELTEVHNNSELRKLLMK 285 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~----l~~~i~~l~l~~~~~~~~L~~lf~~ 285 (517)
|+|..+.||+.||||||||+|+..++-. .|.+.+.+++. .+..++.+-...
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e--E~~~~l~~~~~~ 71 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE--ESPQDIIKNARS 71 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe--cCHHHHHHHHHH
Confidence 7888899999999999999999987432 26788888875 355555555443
No 434
>PRK12338 hypothetical protein; Provisional
Probab=96.49 E-value=0.0023 Score=65.44 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=25.2
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCce
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDI 265 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i 265 (517)
.-+++.|+|||||||+|++||..++...
T Consensus 5 ~ii~i~G~sGsGKST~a~~la~~l~~~~ 32 (319)
T PRK12338 5 YVILIGSASGIGKSTIASELARTLNIKH 32 (319)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCeE
Confidence 4689999999999999999999998753
No 435
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.46 E-value=0.041 Score=50.74 Aligned_cols=29 Identities=24% Similarity=0.372 Sum_probs=23.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHHh---CCceEEE
Q 010133 240 YLLYGPPGTGKSSMIAAMANYL---GYDIYDL 268 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l---~~~i~~l 268 (517)
+.+|+++|+|||++|.++|-.. |..+..+
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~v 36 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGHGYRVGVV 36 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 5689999999999999986544 6666664
No 436
>PHA00350 putative assembly protein
Probab=96.46 E-value=0.0057 Score=64.44 Aligned_cols=61 Identities=16% Similarity=0.249 Sum_probs=38.8
Q ss_pred eEEeCCCCCcHHHHHHH--H--HHHhCCceEEEeeccccChHHH---------------------------HHHHHhccC
Q 010133 240 YLLYGPPGTGKSSMIAA--M--ANYLGYDIYDLELTEVHNNSEL---------------------------RKLLMKTSS 288 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~a--l--A~~l~~~i~~l~l~~~~~~~~L---------------------------~~lf~~~~~ 288 (517)
+|++|.||+|||..+-. | |-..|..++. |+..+. .+.+ ...|.-.+.
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~GR~V~T-NI~Gl~-le~i~~~~~~~p~~~~li~i~~~~~~~~~~~~~~~~w~p~ 81 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDGRKVIT-NIPGLN-LDVFEKVFGEFPSTARLIRIVDRNLEGFESMNRPFSWRPR 81 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCCCEEEE-CCCCCC-HHHHHhhcccCcccceeEEeccccccchhhhccccccCCC
Confidence 78999999999998775 3 3334665553 444321 1111 111222456
Q ss_pred CcEEEEccchhhhc
Q 010133 289 KSIIVIEDIDCSIS 302 (517)
Q Consensus 289 ~sII~iDdID~~~~ 302 (517)
.++|||||+..++.
T Consensus 82 gaLIViDEaq~~~p 95 (399)
T PHA00350 82 GALYVIDEAQMIFP 95 (399)
T ss_pred CCEEEEECchhhcC
Confidence 79999999999874
No 437
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.44 E-value=0.016 Score=63.14 Aligned_cols=64 Identities=22% Similarity=0.309 Sum_probs=41.6
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHHHh-----CCceEEEeeccc----------------------cChHHHHHHHHhccC
Q 010133 236 WKRGYLLYGPPGTGKSSMIAAMANYL-----GYDIYDLELTEV----------------------HNNSELRKLLMKTSS 288 (517)
Q Consensus 236 ~~rg~LL~GpPGTGKTsla~alA~~l-----~~~i~~l~l~~~----------------------~~~~~L~~lf~~~~~ 288 (517)
+..-+.|.||+|+||||++..||..+ +..+..+++... .+...+..++.....
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 34568899999999999999998764 234555543221 122345555555556
Q ss_pred CcEEEEccchh
Q 010133 289 KSIIVIEDIDC 299 (517)
Q Consensus 289 ~sII~iDdID~ 299 (517)
..+||||..-.
T Consensus 429 ~DLVLIDTaG~ 439 (559)
T PRK12727 429 YKLVLIDTAGM 439 (559)
T ss_pred CCEEEecCCCc
Confidence 67777776643
No 438
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.44 E-value=0.0066 Score=62.45 Aligned_cols=61 Identities=18% Similarity=0.159 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhch-hHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeecc
Q 010133 211 KKIEIMEDLKDFANGM-SFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTE 272 (517)
Q Consensus 211 ~k~~i~~~l~~fl~~~-~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~ 272 (517)
.++.+.+.+...+... ..+. .....+.-++|.||||+||||++..||..+ +..+..+++..
T Consensus 88 ~~~~l~~~l~~~l~~~~~~~~-~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 88 LKELLKEELAEILEPVEKPLN-IEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred HHHHHHHHHHHHhCcCCcccc-ccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 4555555666666421 1111 111224568899999999999999999887 55666666543
No 439
>PTZ00202 tuzin; Provisional
Probab=96.42 E-value=0.01 Score=62.88 Aligned_cols=77 Identities=17% Similarity=0.200 Sum_probs=53.8
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccChH
Q 010133 198 HPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNNS 277 (517)
Q Consensus 198 ~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~~~ 277 (517)
-|....+++|.++....+...+. . .....++-..|.||+|||||+|++.++..++...|.+|+.. ..+
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~----~------~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg--~eE 324 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLR----R------LDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRG--TED 324 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHh----c------cCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCC--HHH
Confidence 45567788888877666644333 2 12222356789999999999999999999998888888873 344
Q ss_pred HHHHHHHhc
Q 010133 278 ELRKLLMKT 286 (517)
Q Consensus 278 ~L~~lf~~~ 286 (517)
-|+.++...
T Consensus 325 lLr~LL~AL 333 (550)
T PTZ00202 325 TLRSVVKAL 333 (550)
T ss_pred HHHHHHHHc
Confidence 455555544
No 440
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.42 E-value=0.0026 Score=59.34 Aligned_cols=22 Identities=32% Similarity=0.776 Sum_probs=20.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHHh
Q 010133 240 YLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l 261 (517)
++|.|+||+||||+++.++..+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7999999999999999999888
No 441
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.42 E-value=0.0062 Score=62.65 Aligned_cols=40 Identities=18% Similarity=0.190 Sum_probs=31.6
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHh---------CCceEEEeecc
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYL---------GYDIYDLELTE 272 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l---------~~~i~~l~l~~ 272 (517)
|+|...-++++||||||||+|+..+|-.. +..++.++...
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 68877789999999999999999987553 33666676654
No 442
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.41 E-value=0.0066 Score=65.53 Aligned_cols=69 Identities=20% Similarity=0.257 Sum_probs=45.5
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeecccc--------------------ChHHHHHHHHh--cc
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVH--------------------NNSELRKLLMK--TS 287 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~--------------------~~~~L~~lf~~--~~ 287 (517)
|++...-+||+|+||+|||+|+..+|..+ +.+++.++..+-. ....+..+... ..
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 67777779999999999999999987655 3466666543210 01112222221 23
Q ss_pred CCcEEEEccchhhh
Q 010133 288 SKSIIVIEDIDCSI 301 (517)
Q Consensus 288 ~~sII~iDdID~~~ 301 (517)
.+.+|+||.|..+.
T Consensus 170 ~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 170 NPQACVIDSIQTLY 183 (454)
T ss_pred CCcEEEEecchhhc
Confidence 67899999998763
No 443
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.41 E-value=0.0042 Score=60.90 Aligned_cols=40 Identities=18% Similarity=0.239 Sum_probs=33.2
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHh----CCceEEEeecc
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYL----GYDIYDLELTE 272 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l----~~~i~~l~l~~ 272 (517)
|++...-++|.||||+|||+|+..+|... +.+++.+++..
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~ 52 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 77777789999999999999999886554 78888887755
No 444
>PLN02459 probable adenylate kinase
Probab=96.40 E-value=0.0035 Score=62.41 Aligned_cols=29 Identities=24% Similarity=0.547 Sum_probs=25.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEE
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYD 267 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~ 267 (517)
.++|.||||+||||+++.||..+++..+.
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~~~~is 59 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLGVPHIA 59 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 38889999999999999999999865443
No 445
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.39 E-value=0.0026 Score=62.71 Aligned_cols=32 Identities=31% Similarity=0.759 Sum_probs=23.8
Q ss_pred EeCCCCCcHHHHHHHHHHHh---CCceEEEeeccc
Q 010133 242 LYGPPGTGKSSMIAAMANYL---GYDIYDLELTEV 273 (517)
Q Consensus 242 L~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~ 273 (517)
+.||||+||||+++++...+ +.+++.+|+.--
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa 35 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPA 35 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchH
Confidence 46999999999999999887 677888877543
No 446
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.39 E-value=0.016 Score=53.90 Aligned_cols=23 Identities=30% Similarity=0.629 Sum_probs=21.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l 261 (517)
-+.|.||+|+|||+|.++||+.+
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 48899999999999999999876
No 447
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.39 E-value=0.0026 Score=59.39 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=22.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGY 263 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~ 263 (517)
-++|.||||+||||++++||..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 4789999999999999999998764
No 448
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=96.38 E-value=0.0029 Score=57.43 Aligned_cols=46 Identities=26% Similarity=0.486 Sum_probs=35.0
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccChHHHHHH
Q 010133 235 AWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNNSELRKL 282 (517)
Q Consensus 235 ~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~~~~L~~l 282 (517)
|++-.+++-|++||||||++++++.+++++|++-| ++...++..+.
T Consensus 10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgD--d~Hp~~NveKM 55 (191)
T KOG3354|consen 10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGD--DLHPPANVEKM 55 (191)
T ss_pred CCceeEEEEecCCCChhhHHHHHHHHhCCcccccc--cCCCHHHHHHH
Confidence 44556889999999999999999999999887543 45455544433
No 449
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.38 E-value=0.0053 Score=57.62 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=23.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCc
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYD 264 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~ 264 (517)
-+.|.||+|+||||+++++++.++..
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~~~ 30 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFSAK 30 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 47899999999999999999998863
No 450
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.37 E-value=0.02 Score=52.76 Aligned_cols=63 Identities=25% Similarity=0.467 Sum_probs=39.7
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHh---------------CCceEEEe----ecc--cc-Ch---HHHHHHHHhcc--CCc
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYL---------------GYDIYDLE----LTE--VH-NN---SELRKLLMKTS--SKS 290 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l---------------~~~i~~l~----l~~--~~-~~---~~L~~lf~~~~--~~s 290 (517)
+-.++.||.|+|||++.++++-.+ +..+..++ ... +. .. ..+...+...+ .|.
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS~G~~~~~~la~~L~~~~~~~~~ 101 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALILALASLKPRP 101 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeeccccHHHHHHHHHHHHhcCCCCCC
Confidence 468999999999999999984332 33233333 111 11 11 12444455444 889
Q ss_pred EEEEccchhh
Q 010133 291 IIVIEDIDCS 300 (517)
Q Consensus 291 II~iDdID~~ 300 (517)
+++|||+..-
T Consensus 102 llllDEp~~g 111 (162)
T cd03227 102 LYILDEIDRG 111 (162)
T ss_pred EEEEeCCCCC
Confidence 9999999874
No 451
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.37 E-value=0.053 Score=57.58 Aligned_cols=37 Identities=24% Similarity=0.425 Sum_probs=28.3
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHh----CCceEEEeeccc
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYL----GYDIYDLELTEV 273 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l----~~~i~~l~l~~~ 273 (517)
++-++|.||+|+||||++..||..+ |..+..+++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~ 263 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNY 263 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccch
Confidence 3458899999999999999999754 455666665543
No 452
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.37 E-value=0.0045 Score=57.55 Aligned_cols=34 Identities=32% Similarity=0.470 Sum_probs=28.9
Q ss_pred eEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccc
Q 010133 240 YLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEV 273 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~ 273 (517)
+++.||||+|||+++..+|..+ +..+..+++...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 6899999999999999998876 677888887654
No 453
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.36 E-value=0.0085 Score=58.20 Aligned_cols=40 Identities=23% Similarity=0.211 Sum_probs=31.3
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeecc
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTE 272 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~ 272 (517)
|+|...-+++.||||+|||+++..+|... +.+++.+++..
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 77777789999999999999998886543 66666666543
No 454
>PLN02165 adenylate isopentenyltransferase
Probab=96.36 E-value=0.0031 Score=64.80 Aligned_cols=31 Identities=23% Similarity=0.419 Sum_probs=27.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEEe
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDLE 269 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l~ 269 (517)
-+.|.||+|+|||+|+.+||..++..++..|
T Consensus 45 iivIiGPTGSGKStLA~~LA~~l~~eIIsaD 75 (334)
T PLN02165 45 VVVIMGATGSGKSRLSVDLATRFPSEIINSD 75 (334)
T ss_pred EEEEECCCCCcHHHHHHHHHHHcCCceecCC
Confidence 5899999999999999999999998766654
No 455
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.35 E-value=0.0042 Score=58.43 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=26.8
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhC---CceEEEeeccc
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLG---YDIYDLELTEV 273 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~---~~i~~l~l~~~ 273 (517)
+.+.|+||||||+|++.|+..++ .++..+++.+.
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf 38 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDY 38 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhc
Confidence 57899999999999999999884 45555555444
No 456
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.34 E-value=0.01 Score=59.76 Aligned_cols=62 Identities=24% Similarity=0.173 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhch-hHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccc
Q 010133 211 KKIEIMEDLKDFANGM-SFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEV 273 (517)
Q Consensus 211 ~k~~i~~~l~~fl~~~-~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~ 273 (517)
..+.+.+.+...+..- ..+.. ....++-++|.||||+||||++..+|..+ |..+..+++...
T Consensus 46 ~~~~~~e~l~~~~~~~~~~~~~-~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 46 LKEILKEYLKEILKETDLELIV-EENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred HHHHHHHHHHHHHcccchhhcc-cCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 3444455555555432 11221 12234578889999999999999998877 666777766543
No 457
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.34 E-value=0.019 Score=55.81 Aligned_cols=62 Identities=23% Similarity=0.415 Sum_probs=41.0
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHh-----CC---------ceEEEeecccc--------------ChHHHHHHHHhccCC
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYL-----GY---------DIYDLELTEVH--------------NNSELRKLLMKTSSK 289 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l-----~~---------~i~~l~l~~~~--------------~~~~L~~lf~~~~~~ 289 (517)
+-++|+||.|.|||++.+.++... |. ++++-=++.+. .-.++..++..+..+
T Consensus 31 ~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~~ 110 (218)
T cd03286 31 RILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFTRIGARDDIMKGESTFMVELSETANILRHATPD 110 (218)
T ss_pred cEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEEecCcccccccCcchHHHHHHHHHHHHHhCCCC
Confidence 468999999999999999886532 32 22211111111 013456677888899
Q ss_pred cEEEEccchh
Q 010133 290 SIIVIEDIDC 299 (517)
Q Consensus 290 sII~iDdID~ 299 (517)
++|+|||+-.
T Consensus 111 sLvLlDE~~~ 120 (218)
T cd03286 111 SLVILDELGR 120 (218)
T ss_pred eEEEEecccC
Confidence 9999999865
No 458
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.33 E-value=0.04 Score=57.08 Aligned_cols=38 Identities=24% Similarity=0.307 Sum_probs=32.3
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccc
Q 010133 236 WKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEV 273 (517)
Q Consensus 236 ~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~ 273 (517)
.|-.+.|||-.|||||.+++++-+.++.+.+.++|-+-
T Consensus 29 ~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ec 66 (438)
T KOG2543|consen 29 IPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVEC 66 (438)
T ss_pred cceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHh
Confidence 34467999999999999999999999999888876553
No 459
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.30 E-value=0.0049 Score=59.21 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=26.4
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhC-CceEEEeec
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLG-YDIYDLELT 271 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~-~~i~~l~l~ 271 (517)
.-+.|.||||||||||+++|++.++ ..+..++..
T Consensus 7 ~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D 41 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQD 41 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCC
Confidence 3578999999999999999999983 344444443
No 460
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.30 E-value=0.0053 Score=59.76 Aligned_cols=38 Identities=24% Similarity=0.186 Sum_probs=29.6
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEee
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLEL 270 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l 270 (517)
|++....++++||||||||+|+..+|... +..++.+++
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 67777789999999999999999876432 555666655
No 461
>PRK13808 adenylate kinase; Provisional
Probab=96.30 E-value=0.0035 Score=64.52 Aligned_cols=28 Identities=29% Similarity=0.577 Sum_probs=25.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCCceEE
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGYDIYD 267 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~~i~~ 267 (517)
++|+||||+|||+++..||..+|+..+.
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is 30 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLS 30 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 8999999999999999999999875544
No 462
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.29 E-value=0.0037 Score=59.77 Aligned_cols=38 Identities=24% Similarity=0.381 Sum_probs=29.2
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHHHh-CCceEEEeeccc
Q 010133 236 WKRGYLLYGPPGTGKSSMIAAMANYL-GYDIYDLELTEV 273 (517)
Q Consensus 236 ~~rg~LL~GpPGTGKTsla~alA~~l-~~~i~~l~l~~~ 273 (517)
.|.-+++.|+||+|||+++..+...+ +-.++.++...+
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~ 52 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEF 52 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGG
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHH
Confidence 35678999999999999999999988 777888877665
No 463
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.29 E-value=0.018 Score=59.24 Aligned_cols=25 Identities=32% Similarity=0.663 Sum_probs=22.6
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHh
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l 261 (517)
+.++++.||+|+||||+++||+.+.
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999999874
No 464
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.28 E-value=0.0039 Score=59.55 Aligned_cols=31 Identities=29% Similarity=0.281 Sum_probs=27.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEEe
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDLE 269 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l~ 269 (517)
-+.|+|+||+|||++++.+++.+|+++++.+
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~~D 33 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILDAD 33 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEeeCc
Confidence 3789999999999999999998898887543
No 465
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.27 E-value=0.01 Score=59.51 Aligned_cols=83 Identities=23% Similarity=0.384 Sum_probs=55.1
Q ss_pred ccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccC----hHHHH
Q 010133 205 LAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHN----NSELR 280 (517)
Q Consensus 205 v~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~----~~~L~ 280 (517)
+++-++..+-|.+ +.+-+..+ +...||.|.+||||+|+++..|--.++.++.+.++.--+ .++|+
T Consensus 10 lVlf~~ai~hi~r-i~RvL~~~----------~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~~~~f~~dLk 78 (268)
T PF12780_consen 10 LVLFDEAIEHIAR-ISRVLSQP----------RGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYSIKDFKEDLK 78 (268)
T ss_dssp ----HHHHHHHHH-HHHHHCST----------TEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTHHHHHHHHHH
T ss_pred eeeHHHHHHHHHH-HHHHHcCC----------CCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcCHHHHHHHHH
Confidence 4555566555433 55555543 235899999999999999988888899999888765322 34577
Q ss_pred HHHHhcc---CCcEEEEccch
Q 010133 281 KLLMKTS---SKSIIVIEDID 298 (517)
Q Consensus 281 ~lf~~~~---~~sII~iDdID 298 (517)
.++..+. .+++++|+|-+
T Consensus 79 ~~~~~ag~~~~~~vfll~d~q 99 (268)
T PF12780_consen 79 KALQKAGIKGKPTVFLLTDSQ 99 (268)
T ss_dssp HHHHHHHCS-S-EEEEEECCC
T ss_pred HHHHHHhccCCCeEEEecCcc
Confidence 7776653 67888888754
No 466
>PRK06761 hypothetical protein; Provisional
Probab=96.26 E-value=0.0046 Score=62.35 Aligned_cols=32 Identities=28% Similarity=0.427 Sum_probs=27.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEEee
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDLEL 270 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l~l 270 (517)
-+++.||||+||||+++.++..++...+.+++
T Consensus 5 lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~ 36 (282)
T PRK06761 5 LIIIEGLPGFGKSTTAKMLNDILSQNGIEVEL 36 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCcCceEEEE
Confidence 58999999999999999999999876666554
No 467
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.26 E-value=0.0057 Score=58.20 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=25.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhC-CceEEEeecc
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLG-YDIYDLELTE 272 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~-~~i~~l~l~~ 272 (517)
+.|.||+|+|||||+++|++.++ ..+..+++..
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~ 35 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDS 35 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence 56899999999999999999873 3455555444
No 468
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.24 E-value=0.018 Score=65.58 Aligned_cols=69 Identities=16% Similarity=0.272 Sum_probs=43.1
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHH---HhCCceEEEeeccc---------------------cChHHHHHHHH---h
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMAN---YLGYDIYDLELTEV---------------------HNNSELRKLLM---K 285 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~---~l~~~i~~l~l~~~---------------------~~~~~L~~lf~---~ 285 (517)
|+|..+-++++||||||||+|+..++. ..|..++.++...- .+.+.+..+.. .
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 677778899999999999999965432 23445555443321 11122211111 2
Q ss_pred ccCCcEEEEccchhhh
Q 010133 286 TSSKSIIVIEDIDCSI 301 (517)
Q Consensus 286 ~~~~sII~iDdID~~~ 301 (517)
...+.+|+||-|.+++
T Consensus 136 ~~~~~LVVIDSI~aL~ 151 (790)
T PRK09519 136 SGALDIVVIDSVAALV 151 (790)
T ss_pred cCCCeEEEEcchhhhc
Confidence 2367899999999875
No 469
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.23 E-value=0.0068 Score=62.35 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=22.9
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHh
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l 261 (517)
+.++|+.||+|+||||+++||+.++
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999999876
No 470
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.22 E-value=0.0081 Score=60.95 Aligned_cols=28 Identities=29% Similarity=0.384 Sum_probs=25.7
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHhCCc
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYLGYD 264 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l~~~ 264 (517)
|--+|+.||+|||||++|..||..++.+
T Consensus 92 p~iIlI~G~sgsGKStlA~~La~~l~~~ 119 (301)
T PRK04220 92 PIIILIGGASGVGTSTIAFELASRLGIR 119 (301)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4468999999999999999999999887
No 471
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=96.21 E-value=0.0037 Score=57.91 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=21.9
Q ss_pred eCCCCCcHHHHHHHHHHHhCCceEEE
Q 010133 243 YGPPGTGKSSMIAAMANYLGYDIYDL 268 (517)
Q Consensus 243 ~GpPGTGKTsla~alA~~l~~~i~~l 268 (517)
.|||||||||+++++|+.++..++.-
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~ 26 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDG 26 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeC
Confidence 39999999999999999998654443
No 472
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=96.21 E-value=0.0097 Score=63.62 Aligned_cols=28 Identities=36% Similarity=0.450 Sum_probs=25.9
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHhCCc
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYLGYD 264 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l~~~ 264 (517)
|.-++++|+||||||+++..+|..++..
T Consensus 255 p~vil~~G~~G~GKSt~a~~LA~~lg~~ 282 (475)
T PRK12337 255 PLHVLIGGVSGVGKSVLASALAYRLGIT 282 (475)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 5678999999999999999999999985
No 473
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.21 E-value=0.014 Score=61.13 Aligned_cols=37 Identities=19% Similarity=0.233 Sum_probs=29.8
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccc
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEV 273 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~ 273 (517)
++-++|.||+|+||||++..||..+ +..+..+++...
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDty 245 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTF 245 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence 5568899999999999999999876 566666666554
No 474
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=96.20 E-value=0.017 Score=56.82 Aligned_cols=62 Identities=21% Similarity=0.448 Sum_probs=39.6
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHh-----CCceE----EEee-----ccc------c--------ChHHHHHHHHhccCC
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYL-----GYDIY----DLEL-----TEV------H--------NNSELRKLLMKTSSK 289 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l-----~~~i~----~l~l-----~~~------~--------~~~~L~~lf~~~~~~ 289 (517)
+.++|+||..+|||++.+++|--. |..+. .+.+ +.+ . .-.++..++..+..+
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~ 123 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATEK 123 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--TT
T ss_pred eEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecccccccccEEEeecccccccccccccHHHhHHHHHhhhhhcccc
Confidence 578999999999999999986433 33211 1111 111 0 014567778888899
Q ss_pred cEEEEccchh
Q 010133 290 SIIVIEDIDC 299 (517)
Q Consensus 290 sII~iDdID~ 299 (517)
++|+|||+-.
T Consensus 124 sLvliDE~g~ 133 (235)
T PF00488_consen 124 SLVLIDELGR 133 (235)
T ss_dssp EEEEEESTTT
T ss_pred eeeecccccC
Confidence 9999999975
No 475
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.17 E-value=0.0032 Score=58.75 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGY 263 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~ 263 (517)
-++|.||+|+|||++++.|++.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCcc
Confidence 4889999999999999999997654
No 476
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.16 E-value=0.011 Score=62.94 Aligned_cols=63 Identities=13% Similarity=0.249 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHhch-hHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccc
Q 010133 210 EKKIEIMEDLKDFANGM-SFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEV 273 (517)
Q Consensus 210 ~~k~~i~~~l~~fl~~~-~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~ 273 (517)
..++.+.+.|...+... .-+.. ....++-++|.||+|+||||++..||.++ |..+..+++...
T Consensus 73 ~v~~~v~~~L~~~l~~~~~~~~~-~~~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~ 139 (429)
T TIGR01425 73 MIQHAVFKELCNLVDPGVEAFTP-KKGKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTF 139 (429)
T ss_pred HHHHHHHHHHHHHhCCCCccccc-cCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCccc
Confidence 34555666666666432 11111 11124568999999999999999999887 778888877554
No 477
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.14 E-value=0.0063 Score=46.91 Aligned_cols=22 Identities=41% Similarity=0.777 Sum_probs=19.9
Q ss_pred eEEeCCCCCcHHHHHHHHHHHh
Q 010133 240 YLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l 261 (517)
.+|+||.|+||||+.-||.--+
T Consensus 26 tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 26 TLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999996654
No 478
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.14 E-value=0.012 Score=65.52 Aligned_cols=27 Identities=33% Similarity=0.632 Sum_probs=23.4
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHHh
Q 010133 235 AWKRGYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 235 ~~~rg~LL~GpPGTGKTsla~alA~~l 261 (517)
+...-+.+.||+|+|||||++.|++..
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344569999999999999999999876
No 479
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.14 E-value=0.0088 Score=67.26 Aligned_cols=34 Identities=29% Similarity=0.584 Sum_probs=26.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeecc
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTE 272 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~ 272 (517)
.+|++||||||||+++.++...+ |..+..+..+.
T Consensus 175 ~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn 211 (637)
T TIGR00376 175 LFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSN 211 (637)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcH
Confidence 58899999999999998887664 66666665443
No 480
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.13 E-value=0.0054 Score=58.54 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=23.3
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l~ 262 (517)
..-+.|.||+|+|||+|++.|++.+.
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 34689999999999999999999876
No 481
>PRK13975 thymidylate kinase; Provisional
Probab=96.12 E-value=0.007 Score=57.29 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=23.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCc
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYD 264 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~ 264 (517)
-+.|.|++|+||||+++.||..++..
T Consensus 4 ~I~ieG~~GsGKtT~~~~L~~~l~~~ 29 (196)
T PRK13975 4 FIVFEGIDGSGKTTQAKLLAEKLNAF 29 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 47899999999999999999999864
No 482
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=96.12 E-value=0.0055 Score=58.42 Aligned_cols=30 Identities=33% Similarity=0.412 Sum_probs=26.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEEe
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDLE 269 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l~ 269 (517)
-+.|+|++||||||+++.++. +|+++++.|
T Consensus 4 ~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D 33 (194)
T PRK00081 4 IIGLTGGIGSGKSTVANLFAE-LGAPVIDAD 33 (194)
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCEEEEec
Confidence 488999999999999999998 887766654
No 483
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.11 E-value=0.012 Score=57.23 Aligned_cols=62 Identities=23% Similarity=0.386 Sum_probs=39.2
Q ss_pred cceEEeCCCCCcHHHHHHHHHH-----HhCCce---------EEEeecccc---------Ch-----HHHHHHHHhccCC
Q 010133 238 RGYLLYGPPGTGKSSMIAAMAN-----YLGYDI---------YDLELTEVH---------NN-----SELRKLLMKTSSK 289 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~-----~l~~~i---------~~l~l~~~~---------~~-----~~L~~lf~~~~~~ 289 (517)
+-++|.||.|+|||++.+.+|. ..+..+ +.--.+.+. +. ..+..++..+..+
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~~~~~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~ 110 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIFTRIGASDDLAGGRSTFMVEMVETANILNNATER 110 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEeccCCchhhhccCcchHHHHHHHHHHHHHhCCCC
Confidence 3589999999999999999864 223221 110011111 00 1355566667789
Q ss_pred cEEEEccchh
Q 010133 290 SIIVIEDIDC 299 (517)
Q Consensus 290 sII~iDdID~ 299 (517)
++|+|||.-.
T Consensus 111 ~llllDEp~~ 120 (216)
T cd03284 111 SLVLLDEIGR 120 (216)
T ss_pred eEEEEecCCC
Confidence 9999999843
No 484
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=96.11 E-value=0.018 Score=59.83 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=19.8
Q ss_pred CCcceEEeCCCCCcHHHHHHHHH
Q 010133 236 WKRGYLLYGPPGTGKSSMIAAMA 258 (517)
Q Consensus 236 ~~rg~LL~GpPGTGKTsla~alA 258 (517)
.|+|+.|||.-|||||+|.-..-
T Consensus 113 ~PkGlYlYG~VGcGKTmLMDlFy 135 (467)
T KOG2383|consen 113 PPKGLYLYGSVGCGKTMLMDLFY 135 (467)
T ss_pred CCceEEEecccCcchhHHHHHHh
Confidence 37899999999999999986543
No 485
>PRK08356 hypothetical protein; Provisional
Probab=96.10 E-value=0.0056 Score=58.30 Aligned_cols=31 Identities=13% Similarity=0.210 Sum_probs=24.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecc
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTE 272 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~ 272 (517)
-++|+||||+||||+++.|+. .++. .+++++
T Consensus 7 ~i~~~G~~gsGK~t~a~~l~~-~g~~--~is~~~ 37 (195)
T PRK08356 7 IVGVVGKIAAGKTTVAKFFEE-KGFC--RVSCSD 37 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCc--EEeCCC
Confidence 478999999999999999964 6665 455544
No 486
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.10 E-value=0.0051 Score=58.39 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=23.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHHh-CCceEE
Q 010133 240 YLLYGPPGTGKSSMIAAMANYL-GYDIYD 267 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l-~~~i~~ 267 (517)
+.+.|+|||||||+++.|+..+ +..++.
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~ 30 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVIH 30 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEEc
Confidence 5688999999999999999998 444433
No 487
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.10 E-value=0.0047 Score=58.56 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=22.3
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHh
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l 261 (517)
++-+.|.||||+|||+|+++|....
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 4568999999999999999998875
No 488
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.09 E-value=0.0042 Score=59.04 Aligned_cols=23 Identities=30% Similarity=0.603 Sum_probs=21.4
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhC
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~ 262 (517)
+-+.||||+||||||++|+..++
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999997
No 489
>PRK06851 hypothetical protein; Provisional
Probab=96.09 E-value=0.0077 Score=62.91 Aligned_cols=39 Identities=36% Similarity=0.526 Sum_probs=32.7
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccc
Q 010133 235 AWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEV 273 (517)
Q Consensus 235 ~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~ 273 (517)
...|-|+|.||||||||+|+..+|..+ |+++...-|+..
T Consensus 212 ~~~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~d 253 (367)
T PRK06851 212 GVKNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGFD 253 (367)
T ss_pred ccceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 345679999999999999999998877 888887777753
No 490
>PRK10867 signal recognition particle protein; Provisional
Probab=96.08 E-value=0.013 Score=62.76 Aligned_cols=62 Identities=16% Similarity=0.185 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHhch-hHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh----CCceEEEeeccc
Q 010133 211 KKIEIMEDLKDFANGM-SFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL----GYDIYDLELTEV 273 (517)
Q Consensus 211 ~k~~i~~~l~~fl~~~-~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l----~~~i~~l~l~~~ 273 (517)
..+.+.+.+...+... ..+. .....+.-+++.||||+||||++.-+|.++ |..+..+++...
T Consensus 74 ~~~~v~~el~~~l~~~~~~~~-~~~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~ 140 (433)
T PRK10867 74 VIKIVNDELVEILGGENSELN-LAAKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY 140 (433)
T ss_pred HHHHHHHHHHHHhCCCcceee-ecCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 4444555566666432 1111 122335678999999999999998888765 667887877654
No 491
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.07 E-value=0.0033 Score=59.81 Aligned_cols=25 Identities=32% Similarity=0.586 Sum_probs=22.4
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCCc
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGYD 264 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~~ 264 (517)
++|.|+||+|||++++-+|..|.-.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHh
Confidence 7899999999999999999998433
No 492
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=96.07 E-value=0.0061 Score=59.28 Aligned_cols=30 Identities=40% Similarity=0.606 Sum_probs=26.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEE
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDL 268 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l 268 (517)
-+.+.||+||||||+++.||..++++++.-
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~~~~~~~ 33 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLGYAYLDS 33 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeeC
Confidence 477899999999999999999999887753
No 493
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.07 E-value=0.012 Score=64.08 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=29.0
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEe
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLE 269 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~ 269 (517)
|++...-+|+.||||||||+|+..+|... |-+++.+.
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 77878889999999999999998886644 44555443
No 494
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=96.07 E-value=0.0091 Score=53.24 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=19.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 010133 240 YLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~ 260 (517)
+.|.||+|+|||||++++.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 679999999999999999875
No 495
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.026 Score=53.17 Aligned_cols=23 Identities=30% Similarity=0.680 Sum_probs=21.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l 261 (517)
-+.+.||.|+|||||.+.||+-+
T Consensus 30 ~~~i~G~NG~GKTtLLRilaGLl 52 (209)
T COG4133 30 ALQITGPNGAGKTTLLRILAGLL 52 (209)
T ss_pred EEEEECCCCCcHHHHHHHHHccc
Confidence 37789999999999999999977
No 496
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.06 E-value=0.012 Score=63.19 Aligned_cols=84 Identities=21% Similarity=0.398 Sum_probs=53.7
Q ss_pred CCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcc-eEEeCCCCCcHHHHHHHHHHHhCCceE---EE------
Q 010133 199 PSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRG-YLLYGPPGTGKSSMIAAMANYLGYDIY---DL------ 268 (517)
Q Consensus 199 p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg-~LL~GpPGTGKTsla~alA~~l~~~i~---~l------ 268 (517)
..+|+.+.+.+...+.+.. .++. |.| +|+.||.|+|||+..-++.++++.+-. .+
T Consensus 234 ~l~l~~Lg~~~~~~~~~~~----~~~~-----------p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~ 298 (500)
T COG2804 234 ILDLEKLGMSPFQLARLLR----LLNR-----------PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEY 298 (500)
T ss_pred cCCHHHhCCCHHHHHHHHH----HHhC-----------CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeee
Confidence 4468999998888665533 3333 235 677899999999999999999865544 22
Q ss_pred eeccc---c--------ChHHHHHHHHhccCCcEEEEccchh
Q 010133 269 ELTEV---H--------NNSELRKLLMKTSSKSIIVIEDIDC 299 (517)
Q Consensus 269 ~l~~~---~--------~~~~L~~lf~~~~~~sII~iDdID~ 299 (517)
.+..+ . -..-|+.++ ...|.||.+-||-.
T Consensus 299 ~~~gI~Q~qVN~k~gltfa~~LRa~L--RqDPDvImVGEIRD 338 (500)
T COG2804 299 QLPGINQVQVNPKIGLTFARALRAIL--RQDPDVIMVGEIRD 338 (500)
T ss_pred ecCCcceeecccccCCCHHHHHHHHh--ccCCCeEEEeccCC
Confidence 11111 0 112233333 24789999999964
No 497
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.06 E-value=0.017 Score=64.25 Aligned_cols=26 Identities=23% Similarity=0.487 Sum_probs=23.1
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l~ 262 (517)
..-+.+.||+|+|||||++.|++...
T Consensus 369 G~~~aIvG~sGsGKSTLl~ll~gl~~ 394 (582)
T PRK11176 369 GKTVALVGRSGSGKSTIANLLTRFYD 394 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC
Confidence 34599999999999999999999873
No 498
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.05 E-value=0.0057 Score=62.56 Aligned_cols=33 Identities=21% Similarity=0.431 Sum_probs=28.4
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCceEEEee
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYDLEL 270 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l 270 (517)
.-+++.||+|||||+|+..||..++..++..|.
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds 37 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGEIISADS 37 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCcEEeccc
Confidence 468999999999999999999999887765544
No 499
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.03 E-value=0.011 Score=64.22 Aligned_cols=86 Identities=22% Similarity=0.347 Sum_probs=51.9
Q ss_pred CCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcc-eEEeCCCCCcHHHHHHHHHHHhC---CceEEEee----
Q 010133 199 PSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRG-YLLYGPPGTGKSSMIAAMANYLG---YDIYDLEL---- 270 (517)
Q Consensus 199 p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg-~LL~GpPGTGKTsla~alA~~l~---~~i~~l~l---- 270 (517)
+.+++++.+.++..+.+ ...+.. +.| +|++||+|+||||+..++.++++ ..++.++-
T Consensus 218 ~~~l~~Lg~~~~~~~~l----~~~~~~-----------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 218 RLDLETLGMSPELLSRF----ERLIRR-----------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCHHHcCCCHHHHHHH----HHHHhc-----------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 45788888877764443 333333 245 68999999999999999877774 33444421
Q ss_pred --ccc-----cC--hHHHHHHHHh--ccCCcEEEEccchh
Q 010133 271 --TEV-----HN--NSELRKLLMK--TSSKSIIVIEDIDC 299 (517)
Q Consensus 271 --~~~-----~~--~~~L~~lf~~--~~~~sII~iDdID~ 299 (517)
..+ .. ......++.. ...|.||++.||-.
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd 322 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 111 00 0112222222 24789999999864
No 500
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.03 E-value=0.0054 Score=58.65 Aligned_cols=37 Identities=30% Similarity=0.438 Sum_probs=27.1
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccc
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEV 273 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~ 273 (517)
|+-++|.||+|+||||.+.-||.++ +..+..+++...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~ 40 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTY 40 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTS
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCC
Confidence 3568999999999999999998877 555555554433
Done!