Query 010133
Match_columns 517
No_of_seqs 439 out of 3703
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 20:37:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010133.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010133hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 2.2E-41 7.4E-46 351.8 23.2 216 196-444 141-364 (405)
2 4b4t_I 26S protease regulatory 100.0 2.7E-41 9.4E-46 352.0 23.3 216 196-444 175-398 (437)
3 4b4t_M 26S protease regulatory 100.0 5E-41 1.7E-45 353.7 18.8 217 195-444 173-397 (434)
4 4b4t_L 26S protease subunit RP 100.0 2.1E-40 7.2E-45 349.2 23.0 216 196-444 174-397 (437)
5 4b4t_K 26S protease regulatory 100.0 7E-40 2.4E-44 344.7 23.9 216 196-444 165-389 (428)
6 4b4t_H 26S protease regulatory 100.0 8.8E-40 3E-44 343.7 22.7 217 195-444 201-425 (467)
7 3cf2_A TER ATPase, transitiona 100.0 5.9E-36 2E-40 335.6 11.3 216 197-445 471-694 (806)
8 3cf2_A TER ATPase, transitiona 100.0 1.1E-33 3.8E-38 317.2 19.8 211 198-444 199-417 (806)
9 3cf0_A Transitional endoplasmi 100.0 2.1E-29 7E-34 254.8 25.8 217 196-445 8-232 (301)
10 2x8a_A Nuclear valosin-contain 100.0 1.5E-29 5E-34 252.8 20.9 215 198-445 5-229 (274)
11 1xwi_A SKD1 protein; VPS4B, AA 100.0 3.3E-28 1.1E-32 248.5 26.0 212 197-445 6-226 (322)
12 2ce7_A Cell division protein F 100.0 1.7E-28 5.7E-33 262.0 23.6 213 198-444 11-231 (476)
13 3eie_A Vacuolar protein sortin 100.0 7.2E-28 2.5E-32 245.7 23.4 215 194-445 9-231 (322)
14 3h4m_A Proteasome-activating n 100.0 9.1E-28 3.1E-32 239.6 23.0 217 195-444 9-233 (285)
15 2qz4_A Paraplegin; AAA+, SPG7, 100.0 3.6E-28 1.2E-32 239.0 19.7 214 199-444 2-224 (262)
16 1lv7_A FTSH; alpha/beta domain 100.0 2.2E-27 7.4E-32 233.8 23.9 215 196-444 5-227 (257)
17 2qp9_X Vacuolar protein sortin 100.0 3.4E-27 1.2E-31 244.1 24.0 212 197-445 45-264 (355)
18 3hu3_A Transitional endoplasmi 100.0 2.4E-27 8.2E-32 254.6 21.6 248 198-481 199-477 (489)
19 2zan_A Vacuolar protein sortin 99.9 1.9E-26 6.4E-31 245.5 22.6 213 196-445 127-348 (444)
20 2dhr_A FTSH; AAA+ protein, hex 99.9 5.1E-26 1.7E-30 244.2 22.0 233 198-464 26-272 (499)
21 3d8b_A Fidgetin-like protein 1 99.9 2.1E-25 7.3E-30 230.7 24.8 213 197-445 78-298 (357)
22 3vfd_A Spastin; ATPase, microt 99.9 1.6E-25 5.4E-30 234.2 22.8 216 194-445 106-329 (389)
23 2r62_A Cell division protease 99.9 5.7E-27 1.9E-31 231.9 8.8 216 197-444 5-228 (268)
24 3b9p_A CG5977-PA, isoform A; A 99.9 3.8E-25 1.3E-29 222.1 21.7 214 196-445 14-236 (297)
25 1ixz_A ATP-dependent metallopr 99.9 7.2E-25 2.5E-29 215.4 22.5 214 197-444 10-231 (254)
26 1iy2_A ATP-dependent metallopr 99.9 8E-24 2.7E-28 211.0 23.3 216 196-445 33-256 (278)
27 3t15_A Ribulose bisphosphate c 99.9 2.7E-25 9.3E-30 223.9 11.3 171 231-439 30-221 (293)
28 1ypw_A Transitional endoplasmi 99.9 5.9E-27 2E-31 265.9 -4.1 216 197-445 471-694 (806)
29 1ypw_A Transitional endoplasmi 99.9 3.8E-22 1.3E-26 226.5 18.9 210 198-443 199-416 (806)
30 3pfi_A Holliday junction ATP-d 99.8 3.9E-19 1.3E-23 181.5 23.2 193 196-443 22-228 (338)
31 2c9o_A RUVB-like 1; hexameric 99.8 2E-21 6.9E-26 207.3 0.6 214 198-443 32-261 (456)
32 3syl_A Protein CBBX; photosynt 99.8 5.7E-19 2E-23 177.7 16.8 183 204-427 32-235 (309)
33 1hqc_A RUVB; extended AAA-ATPa 99.8 2.2E-18 7.6E-23 174.4 21.0 192 197-443 6-212 (324)
34 1g41_A Heat shock protein HSLU 99.8 1.3E-19 4.5E-24 191.1 5.7 162 204-405 16-188 (444)
35 1ofh_A ATP-dependent HSL prote 99.8 1.7E-17 6E-22 166.2 20.7 173 204-408 16-214 (310)
36 3u61_B DNA polymerase accessor 99.8 1.3E-17 4.5E-22 169.2 18.6 159 188-409 13-178 (324)
37 2chg_A Replication factor C sm 99.7 5.1E-17 1.7E-21 153.5 18.1 154 195-410 9-175 (226)
38 1d2n_A N-ethylmaleimide-sensit 99.7 5.6E-17 1.9E-21 160.7 18.4 183 203-428 33-226 (272)
39 3uk6_A RUVB-like 2; hexameric 99.7 1E-16 3.5E-21 165.1 18.5 186 198-443 38-304 (368)
40 1njg_A DNA polymerase III subu 99.7 5.5E-16 1.9E-20 148.0 21.6 171 195-426 15-215 (250)
41 3hws_A ATP-dependent CLP prote 99.7 1.2E-16 4.2E-21 165.1 16.1 174 205-408 17-268 (363)
42 1sxj_A Activator 1 95 kDa subu 99.7 1.8E-16 6.3E-21 171.5 17.9 189 188-427 26-240 (516)
43 4fcw_A Chaperone protein CLPB; 99.7 2.6E-16 8.7E-21 158.3 17.2 159 204-410 18-230 (311)
44 2chq_A Replication factor C sm 99.7 3.4E-16 1.1E-20 157.3 15.5 173 190-426 6-191 (319)
45 2r44_A Uncharacterized protein 99.7 8E-16 2.7E-20 156.6 18.2 152 201-411 25-200 (331)
46 3pvs_A Replication-associated 99.7 4.7E-16 1.6E-20 165.2 16.5 154 196-411 19-180 (447)
47 1jbk_A CLPB protein; beta barr 99.7 2E-16 6.9E-21 145.9 11.4 152 198-405 17-194 (195)
48 1iqp_A RFCS; clamp loader, ext 99.7 1.1E-15 3.7E-20 154.1 16.6 174 190-427 14-200 (327)
49 1sxj_D Activator 1 41 kDa subu 99.7 7.2E-16 2.5E-20 157.5 15.4 175 189-427 25-223 (353)
50 3pxg_A Negative regulator of g 99.7 1.6E-16 5.6E-21 169.9 10.9 163 197-427 174-360 (468)
51 1l8q_A Chromosomal replication 99.6 2.1E-15 7.3E-20 153.1 17.2 191 196-443 4-209 (324)
52 2v1u_A Cell division control p 99.6 1.7E-15 5.8E-20 156.0 16.5 193 201-443 17-250 (387)
53 3m6a_A ATP-dependent protease 99.6 1.2E-15 4.2E-20 165.9 16.1 160 202-409 80-266 (543)
54 3bos_A Putative DNA replicatio 99.6 1.5E-15 5E-20 146.0 14.4 176 195-426 20-204 (242)
55 1sxj_B Activator 1 37 kDa subu 99.6 3.8E-15 1.3E-19 149.9 17.3 175 189-427 9-197 (323)
56 1um8_A ATP-dependent CLP prote 99.6 1.2E-14 3.9E-19 150.9 20.8 174 204-407 22-284 (376)
57 1jr3_A DNA polymerase III subu 99.6 1.1E-14 3.7E-19 149.9 19.9 172 195-427 8-209 (373)
58 1r6b_X CLPA protein; AAA+, N-t 99.6 7.7E-15 2.6E-19 165.8 18.0 187 204-443 459-709 (758)
59 2z4s_A Chromosomal replication 99.6 1.2E-14 3.9E-19 154.3 18.3 189 196-443 98-307 (440)
60 2qby_B CDC6 homolog 3, cell di 99.6 2.6E-14 9E-19 147.5 20.5 169 203-428 20-231 (384)
61 1g8p_A Magnesium-chelatase 38 99.6 7.8E-15 2.7E-19 149.7 15.4 154 197-409 18-232 (350)
62 1in4_A RUVB, holliday junction 99.6 9.3E-14 3.2E-18 142.0 23.3 194 195-443 17-224 (334)
63 3te6_A Regulatory protein SIR3 99.6 2.1E-14 7.3E-19 145.4 17.4 205 208-468 25-291 (318)
64 2p65_A Hypothetical protein PF 99.6 3E-15 1E-19 137.8 10.0 146 197-397 16-187 (187)
65 2bjv_A PSP operon transcriptio 99.6 4.1E-14 1.4E-18 139.4 18.3 154 200-409 3-194 (265)
66 1sxj_E Activator 1 40 kDa subu 99.6 2.6E-14 9E-19 146.3 16.8 172 194-427 5-225 (354)
67 3pxi_A Negative regulator of g 99.6 2.1E-14 7.3E-19 162.2 17.6 157 203-409 491-675 (758)
68 1sxj_C Activator 1 40 kDa subu 99.6 6.6E-14 2.3E-18 143.1 18.8 175 188-426 12-199 (340)
69 2qby_A CDC6 homolog 1, cell di 99.6 1.1E-13 3.9E-18 142.1 20.5 192 200-443 17-246 (386)
70 1fnn_A CDC6P, cell division co 99.6 1.6E-13 5.6E-18 141.5 20.8 192 201-443 15-248 (389)
71 1qvr_A CLPB protein; coiled co 99.6 2.9E-14 9.8E-19 163.2 16.2 189 198-442 165-385 (854)
72 3pxi_A Negative regulator of g 99.6 7.4E-15 2.5E-19 166.0 11.1 178 197-442 174-378 (758)
73 1r6b_X CLPA protein; AAA+, N-t 99.5 4E-14 1.4E-18 159.9 14.8 158 197-409 180-362 (758)
74 3n70_A Transport activator; si 99.5 5E-14 1.7E-18 126.4 10.2 84 204-300 2-88 (145)
75 1ojl_A Transcriptional regulat 99.5 2E-13 6.9E-18 137.8 15.9 151 204-409 3-190 (304)
76 1qvr_A CLPB protein; coiled co 99.5 1.3E-13 4.6E-18 157.6 15.4 160 202-410 557-771 (854)
77 1a5t_A Delta prime, HOLB; zinc 99.5 5.4E-12 1.8E-16 128.9 22.5 148 237-441 24-204 (334)
78 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 2.1E-12 7.1E-17 138.7 17.0 126 238-409 42-196 (500)
79 3co5_A Putative two-component 99.4 2.1E-13 7.1E-18 122.1 6.2 82 205-300 6-87 (143)
80 4akg_A Glutathione S-transfera 99.4 7.2E-12 2.5E-16 155.5 17.8 161 201-409 1242-1431(2695)
81 2gno_A DNA polymerase III, gam 99.3 8.5E-12 2.9E-16 125.9 14.5 135 215-409 5-152 (305)
82 3ec2_A DNA replication protein 99.3 2.5E-12 8.5E-17 119.0 8.1 94 198-299 5-111 (180)
83 3f9v_A Minichromosome maintena 99.3 5.8E-13 2E-17 146.2 3.1 127 239-411 329-492 (595)
84 1w5s_A Origin recognition comp 99.3 1.6E-10 5.6E-15 120.0 19.4 197 201-443 20-267 (412)
85 1svm_A Large T antigen; AAA+ f 99.2 3.5E-12 1.2E-16 132.2 5.5 121 232-395 164-284 (377)
86 2w58_A DNAI, primosome compone 99.2 6.1E-11 2.1E-15 111.5 9.6 97 198-300 20-127 (202)
87 1tue_A Replication protein E1; 99.1 1.6E-10 5.3E-15 109.2 9.3 71 216-300 45-115 (212)
88 3k1j_A LON protease, ATP-depen 99.0 1.1E-09 3.7E-14 120.6 13.3 53 196-263 34-86 (604)
89 2qgz_A Helicase loader, putati 99.0 4.1E-10 1.4E-14 113.7 8.6 97 198-300 119-226 (308)
90 3cmw_A Protein RECA, recombina 98.9 1E-09 3.4E-14 131.4 9.3 147 200-374 1017-1218(1706)
91 3dzd_A Transcriptional regulat 98.9 3.9E-08 1.3E-12 101.6 18.4 151 204-409 130-316 (368)
92 2kjq_A DNAA-related protein; s 98.9 3.8E-09 1.3E-13 95.2 8.8 57 237-300 36-95 (149)
93 3vkg_A Dynein heavy chain, cyt 98.8 3.5E-08 1.2E-12 123.7 18.0 160 200-409 1278-1469(3245)
94 2qen_A Walker-type ATPase; unk 98.8 4.5E-07 1.5E-11 91.4 23.1 183 198-442 7-246 (350)
95 2vhj_A Ntpase P4, P4; non- hyd 98.8 2E-09 6.9E-14 108.5 4.8 115 233-381 119-242 (331)
96 1ny5_A Transcriptional regulat 98.8 1.6E-07 5.3E-12 97.7 18.7 153 202-409 136-325 (387)
97 2fna_A Conserved hypothetical 98.8 2.2E-07 7.5E-12 93.8 19.2 57 199-272 9-65 (357)
98 2r2a_A Uncharacterized protein 98.8 1.4E-08 4.8E-13 96.0 9.1 119 239-399 7-156 (199)
99 4akg_A Glutathione S-transfera 98.8 2.7E-08 9.1E-13 124.0 14.0 124 238-406 646-790 (2695)
100 1u0j_A DNA replication protein 98.7 5.9E-08 2E-12 95.4 12.3 59 235-300 102-160 (267)
101 3vkg_A Dynein heavy chain, cyt 98.4 1E-06 3.5E-11 110.7 13.7 125 238-407 605-751 (3245)
102 3cmu_A Protein RECA, recombina 98.3 8.8E-07 3E-11 107.4 8.9 114 233-374 1423-1563(2050)
103 3f8t_A Predicted ATPase involv 98.3 9.7E-07 3.3E-11 93.0 7.4 139 205-400 215-385 (506)
104 1jr3_D DNA polymerase III, del 98.2 7.6E-06 2.6E-10 83.1 12.9 137 237-425 18-171 (343)
105 1ye8_A Protein THEP1, hypothet 98.1 1.1E-05 3.9E-10 74.4 11.0 28 239-266 2-29 (178)
106 2cvh_A DNA repair and recombin 97.8 0.00011 3.8E-09 68.8 11.0 40 233-272 16-55 (220)
107 1z6t_A APAF-1, apoptotic prote 97.8 0.00054 1.9E-08 74.4 17.2 63 199-272 120-189 (591)
108 3upu_A ATP-dependent DNA helic 97.7 0.00024 8.1E-09 75.2 12.8 66 190-270 13-82 (459)
109 1qhx_A CPT, protein (chloramph 97.7 2.6E-05 8.9E-10 70.9 4.2 34 238-271 4-37 (178)
110 3trf_A Shikimate kinase, SK; a 97.7 2.2E-05 7.7E-10 71.9 3.8 32 238-269 6-37 (185)
111 2orw_A Thymidine kinase; TMTK, 97.7 4.7E-05 1.6E-09 70.6 5.8 62 239-300 5-88 (184)
112 3hr8_A Protein RECA; alpha and 97.6 0.00011 3.7E-09 75.3 9.0 69 233-301 57-152 (356)
113 2z43_A DNA repair and recombin 97.6 5.1E-05 1.7E-09 76.7 5.9 40 233-272 103-151 (324)
114 3sfz_A APAF-1, apoptotic pepti 97.6 0.00086 2.9E-08 78.7 17.1 64 198-272 119-189 (1249)
115 3kb2_A SPBC2 prophage-derived 97.6 5.9E-05 2E-09 67.9 5.5 32 239-270 3-34 (173)
116 3vaa_A Shikimate kinase, SK; s 97.6 3.5E-05 1.2E-09 71.9 3.9 32 238-269 26-57 (199)
117 2w0m_A SSO2452; RECA, SSPF, un 97.6 0.0003 1E-08 66.2 10.4 37 233-269 19-58 (235)
118 2rhm_A Putative kinase; P-loop 97.6 3.4E-05 1.2E-09 71.0 3.5 33 235-267 3-35 (193)
119 1via_A Shikimate kinase; struc 97.5 5.1E-05 1.8E-09 69.0 3.4 30 239-268 6-35 (175)
120 3iij_A Coilin-interacting nucl 97.5 5.8E-05 2E-09 68.9 3.6 31 238-268 12-42 (180)
121 1v5w_A DMC1, meiotic recombina 97.4 0.00017 5.9E-09 73.4 7.2 40 233-272 118-166 (343)
122 2iyv_A Shikimate kinase, SK; t 97.4 6.9E-05 2.3E-09 68.6 3.9 31 239-269 4-34 (184)
123 1zuh_A Shikimate kinase; alpha 97.4 6.7E-05 2.3E-09 67.7 3.6 32 238-269 8-39 (168)
124 3cmu_A Protein RECA, recombina 97.4 0.00026 8.8E-09 86.3 9.4 69 233-301 1077-1172(2050)
125 1xp8_A RECA protein, recombina 97.4 0.00031 1E-08 72.3 8.7 69 233-301 70-165 (366)
126 1kag_A SKI, shikimate kinase I 97.4 0.00011 3.6E-09 66.5 4.5 30 238-267 5-34 (173)
127 1y63_A LMAJ004144AAA protein; 97.4 7.5E-05 2.5E-09 68.8 3.5 31 238-268 11-42 (184)
128 2ze6_A Isopentenyl transferase 97.4 0.0001 3.4E-09 71.8 4.3 32 239-270 3-34 (253)
129 1e6c_A Shikimate kinase; phosp 97.3 9.1E-05 3.1E-09 66.8 3.3 30 239-268 4-33 (173)
130 1gvn_B Zeta; postsegregational 97.3 0.00027 9.4E-09 70.1 7.1 34 237-270 33-66 (287)
131 2zr9_A Protein RECA, recombina 97.3 0.00035 1.2E-08 71.4 7.9 69 233-301 57-152 (349)
132 2cdn_A Adenylate kinase; phosp 97.3 0.00013 4.4E-09 67.9 4.1 30 239-268 22-51 (201)
133 1u94_A RECA protein, recombina 97.3 0.00043 1.5E-08 70.9 8.2 69 233-301 59-154 (356)
134 3lw7_A Adenylate kinase relate 97.3 0.0001 3.5E-09 66.0 3.2 29 239-268 3-31 (179)
135 1pzn_A RAD51, DNA repair and r 97.3 0.00035 1.2E-08 71.3 7.4 30 232-261 126-155 (349)
136 1tev_A UMP-CMP kinase; ploop, 97.3 0.00011 3.9E-09 67.3 3.4 30 238-267 4-33 (196)
137 2pt5_A Shikimate kinase, SK; a 97.3 0.00014 4.7E-09 65.4 3.6 29 240-268 3-31 (168)
138 2i1q_A DNA repair and recombin 97.3 0.00021 7.2E-09 71.8 5.2 28 233-260 94-121 (322)
139 3t61_A Gluconokinase; PSI-biol 97.3 0.00017 5.9E-09 67.1 4.2 31 238-268 19-49 (202)
140 3cm0_A Adenylate kinase; ATP-b 97.2 0.00011 3.9E-09 67.1 2.8 30 239-268 6-35 (186)
141 2p5t_B PEZT; postsegregational 97.2 0.00032 1.1E-08 68.0 6.2 37 237-273 32-68 (253)
142 1nlf_A Regulatory protein REPA 97.2 0.00091 3.1E-08 65.7 9.1 29 233-261 26-54 (279)
143 2c95_A Adenylate kinase 1; tra 97.2 0.00015 5.3E-09 66.6 3.3 31 238-268 10-40 (196)
144 1qf9_A UMP/CMP kinase, protein 97.2 0.00015 5.2E-09 66.3 3.3 32 237-268 6-37 (194)
145 3dl0_A Adenylate kinase; phosp 97.2 0.00016 5.6E-09 67.9 3.4 29 240-268 3-31 (216)
146 1kht_A Adenylate kinase; phosp 97.2 0.00019 6.6E-09 65.5 3.7 24 239-262 5-28 (192)
147 2bwj_A Adenylate kinase 5; pho 97.2 0.00016 5.3E-09 66.8 3.1 31 238-268 13-43 (199)
148 3fb4_A Adenylate kinase; psych 97.2 0.00018 6.3E-09 67.5 3.6 29 240-268 3-31 (216)
149 2r8r_A Sensor protein; KDPD, P 97.2 0.002 6.7E-08 61.6 10.5 34 239-272 8-44 (228)
150 3io5_A Recombination and repai 97.2 0.00076 2.6E-08 67.7 7.9 68 233-301 25-124 (333)
151 1aky_A Adenylate kinase; ATP:A 97.2 0.00019 6.5E-09 67.8 3.4 30 239-268 6-35 (220)
152 1zd8_A GTP:AMP phosphotransfer 97.1 0.00016 5.5E-09 68.7 2.8 31 238-268 8-38 (227)
153 2a5y_B CED-4; apoptosis; HET: 97.1 0.013 4.4E-07 63.2 18.3 44 206-259 131-174 (549)
154 1ly1_A Polynucleotide kinase; 97.1 0.00017 5.7E-09 65.3 2.8 26 238-263 3-29 (181)
155 3be4_A Adenylate kinase; malar 97.1 0.00017 5.8E-09 68.2 2.9 30 239-268 7-36 (217)
156 1g5t_A COB(I)alamin adenosyltr 97.1 0.0023 8E-08 59.7 10.5 109 239-395 30-179 (196)
157 1zp6_A Hypothetical protein AT 97.1 0.00019 6.5E-09 65.9 3.0 35 235-269 7-41 (191)
158 1knq_A Gluconate kinase; ALFA/ 97.1 0.00031 1.1E-08 63.6 4.3 29 239-267 10-38 (175)
159 2vli_A Antibiotic resistance p 97.1 0.00021 7.2E-09 65.0 3.1 29 238-266 6-34 (183)
160 1ukz_A Uridylate kinase; trans 97.1 0.00022 7.6E-09 66.2 3.2 30 239-268 17-46 (203)
161 2pez_A Bifunctional 3'-phospho 97.1 0.00044 1.5E-08 63.0 5.1 32 238-269 6-40 (179)
162 2pbr_A DTMP kinase, thymidylat 97.1 0.00044 1.5E-08 63.3 4.9 30 240-269 3-35 (195)
163 1zak_A Adenylate kinase; ATP:A 97.1 0.00019 6.6E-09 67.9 2.4 30 238-267 6-35 (222)
164 1ak2_A Adenylate kinase isoenz 97.1 0.00039 1.3E-08 66.4 4.5 30 239-268 18-47 (233)
165 3e1s_A Exodeoxyribonuclease V, 97.0 0.00099 3.4E-08 72.5 8.0 32 238-269 205-239 (574)
166 4eun_A Thermoresistant glucoki 97.0 0.00047 1.6E-08 64.2 4.6 29 238-266 30-58 (200)
167 1e4v_A Adenylate kinase; trans 97.0 0.00028 9.6E-09 66.4 3.1 29 240-268 3-31 (214)
168 3umf_A Adenylate kinase; rossm 97.0 0.00048 1.6E-08 65.6 4.5 31 236-266 28-58 (217)
169 3crm_A TRNA delta(2)-isopenten 97.0 0.00039 1.3E-08 70.1 4.0 32 238-269 6-37 (323)
170 3tlx_A Adenylate kinase 2; str 97.0 0.00039 1.3E-08 67.1 3.6 31 238-268 30-60 (243)
171 3lda_A DNA repair protein RAD5 96.9 0.0013 4.4E-08 68.4 7.6 28 233-260 174-201 (400)
172 2xb4_A Adenylate kinase; ATP-b 96.9 0.00053 1.8E-08 65.1 4.3 28 240-267 3-30 (223)
173 1cke_A CK, MSSA, protein (cyti 96.9 0.00057 2E-08 64.4 4.3 29 239-267 7-35 (227)
174 2jaq_A Deoxyguanosine kinase; 96.9 0.00055 1.9E-08 63.1 4.1 27 240-266 3-29 (205)
175 2bbw_A Adenylate kinase 4, AK4 96.9 0.00065 2.2E-08 65.3 4.6 30 238-267 28-57 (246)
176 2z0h_A DTMP kinase, thymidylat 96.9 0.00075 2.6E-08 62.0 4.8 30 240-269 3-35 (197)
177 2plr_A DTMP kinase, probable t 96.9 0.001 3.5E-08 61.7 5.7 26 239-264 6-31 (213)
178 3sr0_A Adenylate kinase; phosp 96.9 0.00064 2.2E-08 64.1 4.3 27 240-266 3-29 (206)
179 2if2_A Dephospho-COA kinase; a 96.9 0.00039 1.3E-08 64.6 2.6 30 239-269 3-32 (204)
180 2b8t_A Thymidine kinase; deoxy 96.9 0.0027 9.2E-08 60.6 8.5 62 239-300 14-101 (223)
181 1nks_A Adenylate kinase; therm 96.9 0.00039 1.3E-08 63.5 2.5 24 239-262 3-26 (194)
182 2v54_A DTMP kinase, thymidylat 96.8 0.00059 2E-08 63.1 3.7 32 239-270 6-38 (204)
183 1n0w_A DNA repair protein RAD5 96.8 0.0012 4E-08 62.7 5.7 40 233-272 20-68 (243)
184 3ake_A Cytidylate kinase; CMP 96.8 0.00081 2.8E-08 62.3 4.5 31 239-269 4-34 (208)
185 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.00081 2.8E-08 65.5 4.7 32 239-270 6-40 (260)
186 2ga8_A Hypothetical 39.9 kDa p 96.8 0.00055 1.9E-08 69.8 3.4 50 209-267 5-54 (359)
187 3cmw_A Protein RECA, recombina 96.8 0.0015 5.3E-08 78.6 7.6 70 232-301 29-125 (1706)
188 2c9o_A RUVB-like 1; hexameric 96.8 0.0074 2.5E-07 63.6 12.2 59 344-410 309-380 (456)
189 3uie_A Adenylyl-sulfate kinase 96.8 0.0011 3.9E-08 61.5 5.1 32 238-269 26-60 (200)
190 3r20_A Cytidylate kinase; stru 96.8 0.00093 3.2E-08 64.3 4.5 31 238-268 10-40 (233)
191 1jjv_A Dephospho-COA kinase; P 96.8 0.00077 2.6E-08 62.7 3.7 29 239-268 4-32 (206)
192 3nwj_A ATSK2; P loop, shikimat 96.7 0.00097 3.3E-08 64.8 4.5 32 238-269 49-80 (250)
193 2grj_A Dephospho-COA kinase; T 96.7 0.0007 2.4E-08 63.1 3.3 31 239-269 14-44 (192)
194 2wwf_A Thymidilate kinase, put 96.7 0.00046 1.6E-08 64.3 2.0 31 238-268 11-41 (212)
195 2fz4_A DNA repair protein RAD2 96.7 0.0047 1.6E-07 59.2 8.6 31 239-269 110-140 (237)
196 4a74_A DNA repair and recombin 96.6 0.0021 7.2E-08 60.3 5.8 29 233-261 21-49 (231)
197 4b3f_X DNA-binding protein smu 96.6 0.0033 1.1E-07 69.3 8.1 57 201-272 184-243 (646)
198 3jvv_A Twitching mobility prot 96.6 0.0058 2E-07 62.5 9.2 23 239-261 125-147 (356)
199 3kw6_A 26S protease regulatory 96.6 0.0021 7.2E-08 50.6 4.4 48 394-444 1-48 (78)
200 1nn5_A Similar to deoxythymidy 96.5 0.00075 2.6E-08 62.9 2.0 28 238-265 10-37 (215)
201 1uf9_A TT1252 protein; P-loop, 96.5 0.00097 3.3E-08 61.5 2.7 31 238-269 9-39 (203)
202 2h92_A Cytidylate kinase; ross 96.5 0.0013 4.5E-08 61.7 3.6 31 239-269 5-35 (219)
203 1rz3_A Hypothetical protein rb 96.5 0.0046 1.6E-07 57.5 7.3 35 238-272 23-60 (201)
204 2bdt_A BH3686; alpha-beta prot 96.5 0.0016 5.5E-08 59.6 4.0 25 239-263 4-28 (189)
205 2yvu_A Probable adenylyl-sulfa 96.5 0.0027 9.4E-08 58.0 5.3 32 238-269 14-48 (186)
206 2iut_A DNA translocase FTSK; n 96.5 0.023 7.7E-07 61.4 13.1 41 363-405 377-419 (574)
207 4e22_A Cytidylate kinase; P-lo 96.5 0.0018 6.3E-08 62.7 4.2 29 239-267 29-57 (252)
208 1uj2_A Uridine-cytidine kinase 96.4 0.0021 7.3E-08 62.0 4.6 28 238-265 23-50 (252)
209 2krk_A 26S protease regulatory 96.4 0.0019 6.4E-08 52.1 3.5 50 392-444 7-56 (86)
210 2dr3_A UPF0273 protein PH0284; 96.4 0.002 7E-08 61.1 4.3 40 233-272 19-61 (247)
211 1vht_A Dephospho-COA kinase; s 96.4 0.0019 6.7E-08 60.6 4.1 30 239-269 6-35 (218)
212 1q3t_A Cytidylate kinase; nucl 96.4 0.0024 8.1E-08 61.0 4.7 30 239-268 18-47 (236)
213 2qor_A Guanylate kinase; phosp 96.4 0.002 6.8E-08 60.0 4.0 28 235-262 10-37 (204)
214 3zvl_A Bifunctional polynucleo 96.4 0.0026 8.8E-08 66.4 5.1 41 237-279 258-298 (416)
215 1ltq_A Polynucleotide kinase; 96.3 0.0011 3.8E-08 65.5 2.1 29 238-266 3-32 (301)
216 1kgd_A CASK, peripheral plasma 96.3 0.0021 7.1E-08 58.8 3.7 25 238-262 6-30 (180)
217 1g41_A Heat shock protein HSLU 96.3 0.025 8.4E-07 59.4 12.2 95 280-406 242-346 (444)
218 3a8t_A Adenylate isopentenyltr 96.3 0.0013 4.6E-08 66.5 2.5 33 239-271 42-74 (339)
219 2qmh_A HPR kinase/phosphorylas 96.3 0.0015 5.1E-08 61.2 2.5 32 237-269 34-65 (205)
220 3c8u_A Fructokinase; YP_612366 96.3 0.0037 1.3E-07 58.4 5.3 25 238-262 23-47 (208)
221 1m7g_A Adenylylsulfate kinase; 96.3 0.0029 1E-07 59.2 4.5 32 238-269 26-61 (211)
222 3foz_A TRNA delta(2)-isopenten 96.3 0.0021 7.2E-08 64.3 3.6 33 237-269 10-42 (316)
223 2v3c_C SRP54, signal recogniti 96.3 0.0061 2.1E-07 63.9 7.2 60 211-271 73-136 (432)
224 2qt1_A Nicotinamide riboside k 96.2 0.0013 4.3E-08 61.4 1.7 28 239-266 23-51 (207)
225 2zts_A Putative uncharacterize 96.2 0.0035 1.2E-07 59.5 4.7 39 233-271 26-68 (251)
226 1kao_A RAP2A; GTP-binding prot 96.2 0.014 4.8E-07 50.9 8.3 22 239-260 5-26 (167)
227 3d3q_A TRNA delta(2)-isopenten 96.2 0.0024 8.1E-08 64.8 3.4 32 238-269 8-39 (340)
228 2px0_A Flagellar biosynthesis 96.2 0.0089 3E-07 59.4 7.6 36 237-272 105-144 (296)
229 2j41_A Guanylate kinase; GMP, 96.2 0.0022 7.7E-08 59.2 3.1 24 238-261 7-30 (207)
230 2ius_A DNA translocase FTSK; n 96.2 0.03 1E-06 59.8 12.0 41 364-406 332-374 (512)
231 2f6r_A COA synthase, bifunctio 96.1 0.0023 7.9E-08 63.1 2.9 29 239-268 77-105 (281)
232 3kl4_A SRP54, signal recogniti 96.1 0.0069 2.4E-07 63.5 6.7 61 210-271 70-134 (433)
233 1vt4_I APAF-1 related killer D 96.1 0.015 5E-07 67.1 9.7 55 206-272 131-191 (1221)
234 1ex7_A Guanylate kinase; subst 96.1 0.0042 1.4E-07 57.5 4.5 26 238-263 2-27 (186)
235 3fdi_A Uncharacterized protein 96.1 0.003 1E-07 59.2 3.4 29 239-267 8-36 (201)
236 2ehv_A Hypothetical protein PH 96.1 0.0028 9.6E-08 60.3 3.2 26 233-258 26-51 (251)
237 3dm5_A SRP54, signal recogniti 96.0 0.007 2.4E-07 63.6 6.3 63 209-272 73-138 (443)
238 3tau_A Guanylate kinase, GMP k 96.0 0.0032 1.1E-07 59.0 3.2 25 238-262 9-33 (208)
239 2gxq_A Heat resistant RNA depe 96.0 0.026 8.8E-07 51.9 9.3 23 238-260 39-62 (207)
240 3tr0_A Guanylate kinase, GMP k 96.0 0.0036 1.2E-07 57.8 3.3 24 239-262 9-32 (205)
241 1vma_A Cell division protein F 96.0 0.0091 3.1E-07 59.7 6.5 61 211-272 79-142 (306)
242 1w4r_A Thymidine kinase; type 96.0 0.012 4.2E-07 54.8 6.9 62 239-300 22-103 (195)
243 1qde_A EIF4A, translation init 95.9 0.05 1.7E-06 50.7 11.0 52 199-253 13-67 (224)
244 3b9q_A Chloroplast SRP recepto 95.9 0.0074 2.5E-07 60.2 5.4 60 209-268 70-134 (302)
245 3exa_A TRNA delta(2)-isopenten 95.9 0.0035 1.2E-07 62.8 2.9 31 239-269 5-35 (322)
246 1vec_A ATP-dependent RNA helic 95.9 0.027 9.2E-07 51.8 8.9 18 238-255 41-58 (206)
247 1lvg_A Guanylate kinase, GMP k 95.8 0.005 1.7E-07 57.2 3.7 26 237-262 4-29 (198)
248 3a00_A Guanylate kinase, GMP k 95.8 0.0046 1.6E-07 56.7 3.4 25 238-262 2-26 (186)
249 3asz_A Uridine kinase; cytidin 95.8 0.0033 1.1E-07 58.5 2.4 24 239-262 8-31 (211)
250 2v9p_A Replication protein E1; 95.8 0.0058 2E-07 61.1 4.2 34 232-265 121-154 (305)
251 4eaq_A DTMP kinase, thymidylat 95.8 0.0071 2.4E-07 57.7 4.7 28 239-266 28-57 (229)
252 3gmt_A Adenylate kinase; ssgci 95.8 0.0059 2E-07 58.5 3.9 28 240-267 11-38 (230)
253 3b6e_A Interferon-induced heli 95.7 0.025 8.5E-07 52.2 8.0 24 238-261 49-72 (216)
254 1x6v_B Bifunctional 3'-phospho 95.7 0.0075 2.6E-07 66.0 5.0 32 238-269 53-87 (630)
255 2ce2_X GTPase HRAS; signaling 95.7 0.02 6.7E-07 49.8 6.9 22 239-260 5-26 (166)
256 1z0j_A RAB-22, RAS-related pro 95.6 0.015 5E-07 51.2 5.9 23 239-261 8-30 (170)
257 2og2_A Putative signal recogni 95.6 0.01 3.5E-07 60.6 5.4 61 209-269 127-192 (359)
258 1zu4_A FTSY; GTPase, signal re 95.6 0.014 4.9E-07 58.6 6.4 62 211-272 74-143 (320)
259 1u8z_A RAS-related protein RAL 95.6 0.028 9.6E-07 49.0 7.6 22 239-260 6-27 (168)
260 1cr0_A DNA primase/helicase; R 95.6 0.0061 2.1E-07 60.1 3.4 38 233-270 31-72 (296)
261 3bc1_A RAS-related protein RAB 95.6 0.025 8.6E-07 50.8 7.3 23 238-260 12-34 (195)
262 1z6g_A Guanylate kinase; struc 95.6 0.0071 2.4E-07 57.1 3.7 24 238-261 24-47 (218)
263 1htw_A HI0065; nucleotide-bind 95.5 0.0089 3E-07 53.7 4.0 24 238-261 34-57 (158)
264 1gtv_A TMK, thymidylate kinase 95.5 0.0033 1.1E-07 58.5 1.2 24 240-263 3-26 (214)
265 3bh0_A DNAB-like replicative h 95.5 0.011 3.8E-07 59.2 5.1 39 233-271 64-105 (315)
266 2a9k_A RAS-related protein RAL 95.5 0.034 1.2E-06 49.6 7.9 22 239-260 20-41 (187)
267 1c9k_A COBU, adenosylcobinamid 95.5 0.0098 3.3E-07 54.8 4.1 33 240-273 2-34 (180)
268 1r8s_A ADP-ribosylation factor 95.5 0.024 8.3E-07 49.6 6.7 21 240-260 3-23 (164)
269 1ek0_A Protein (GTP-binding pr 95.5 0.017 5.8E-07 50.7 5.6 22 239-260 5-26 (170)
270 3ice_A Transcription terminati 95.5 0.031 1.1E-06 57.5 8.2 23 239-261 176-198 (422)
271 2yhs_A FTSY, cell division pro 95.5 0.012 4E-07 62.6 5.3 34 237-270 293-329 (503)
272 4dsu_A GTPase KRAS, isoform 2B 95.5 0.024 8.2E-07 50.8 6.7 23 239-261 6-28 (189)
273 3ney_A 55 kDa erythrocyte memb 95.5 0.0091 3.1E-07 55.8 3.9 26 237-262 19-44 (197)
274 1c1y_A RAS-related protein RAP 95.4 0.028 9.4E-07 49.2 6.9 22 239-260 5-26 (167)
275 3hdt_A Putative kinase; struct 95.4 0.0072 2.5E-07 57.6 3.2 29 239-267 16-44 (223)
276 1znw_A Guanylate kinase, GMP k 95.4 0.0083 2.8E-07 55.9 3.6 25 238-262 21-45 (207)
277 4gp7_A Metallophosphoesterase; 95.4 0.0084 2.9E-07 54.2 3.5 20 238-257 10-29 (171)
278 1nrj_B SR-beta, signal recogni 95.4 0.015 5.2E-07 53.9 5.4 24 238-261 13-36 (218)
279 3eph_A TRNA isopentenyltransfe 95.4 0.0065 2.2E-07 62.9 3.1 31 238-268 3-33 (409)
280 2bov_A RAla, RAS-related prote 95.4 0.042 1.4E-06 50.1 8.3 22 239-260 16-37 (206)
281 3q72_A GTP-binding protein RAD 95.4 0.016 5.4E-07 50.9 5.0 21 239-259 4-24 (166)
282 1sky_E F1-ATPase, F1-ATP synth 95.3 0.023 7.9E-07 59.9 6.9 23 239-261 153-175 (473)
283 1x3s_A RAS-related protein RAB 95.3 0.036 1.2E-06 50.0 7.3 22 239-260 17-38 (195)
284 2j37_W Signal recognition part 95.3 0.021 7.2E-07 61.0 6.4 59 211-271 75-138 (504)
285 2i3b_A HCR-ntpase, human cance 95.3 0.01 3.4E-07 55.0 3.5 23 239-261 3-25 (189)
286 3con_A GTPase NRAS; structural 95.2 0.026 8.9E-07 50.9 6.3 22 239-260 23-44 (190)
287 1odf_A YGR205W, hypothetical 3 95.2 0.013 4.6E-07 58.0 4.5 27 237-263 31-57 (290)
288 3e70_C DPA, signal recognition 95.2 0.042 1.4E-06 55.4 8.2 61 210-270 98-165 (328)
289 2axn_A 6-phosphofructo-2-kinas 95.2 0.011 3.9E-07 63.3 4.2 33 238-270 36-71 (520)
290 1r2q_A RAS-related protein RAB 95.2 0.026 8.8E-07 49.5 5.9 21 239-259 8-28 (170)
291 1s96_A Guanylate kinase, GMP k 95.2 0.011 3.9E-07 56.0 3.6 28 235-262 14-41 (219)
292 3tqf_A HPR(Ser) kinase; transf 95.2 0.0082 2.8E-07 54.9 2.5 27 237-264 16-42 (181)
293 2ged_A SR-beta, signal recogni 95.2 0.019 6.5E-07 52.0 5.0 45 213-260 27-71 (193)
294 2eyu_A Twitching motility prot 95.1 0.013 4.5E-07 57.1 4.1 23 239-261 27-49 (261)
295 3t1o_A Gliding protein MGLA; G 95.1 0.055 1.9E-06 48.7 8.0 23 239-261 16-38 (198)
296 2erx_A GTP-binding protein DI- 95.1 0.02 6.7E-07 50.4 4.8 21 239-259 5-25 (172)
297 2efe_B Small GTP-binding prote 95.1 0.03 1E-06 49.9 6.1 22 239-260 14-35 (181)
298 2r6a_A DNAB helicase, replicat 95.1 0.019 6.5E-07 60.4 5.4 39 233-271 199-241 (454)
299 1a7j_A Phosphoribulokinase; tr 95.1 0.0083 2.8E-07 59.4 2.4 36 239-274 7-45 (290)
300 2jeo_A Uridine-cytidine kinase 95.0 0.013 4.6E-07 56.1 3.8 25 240-264 28-52 (245)
301 2oil_A CATX-8, RAS-related pro 95.0 0.017 5.8E-07 52.4 4.2 22 239-260 27-48 (193)
302 2oxc_A Probable ATP-dependent 95.0 0.11 3.8E-06 48.8 10.0 54 197-253 21-77 (230)
303 1xjc_A MOBB protein homolog; s 95.0 0.024 8.1E-07 51.6 5.0 32 239-270 6-40 (169)
304 3tkl_A RAS-related protein RAB 95.0 0.029 1E-06 50.7 5.7 22 239-260 18-39 (196)
305 2ewv_A Twitching motility prot 95.0 0.016 5.6E-07 59.4 4.3 26 237-262 136-161 (372)
306 1m8p_A Sulfate adenylyltransfe 94.9 0.015 5.2E-07 63.1 4.3 32 239-270 398-433 (573)
307 3tqc_A Pantothenate kinase; bi 94.9 0.053 1.8E-06 54.4 8.0 24 239-262 94-117 (321)
308 1np6_A Molybdopterin-guanine d 94.9 0.016 5.5E-07 53.0 3.8 34 237-270 6-42 (174)
309 3thx_B DNA mismatch repair pro 94.9 0.05 1.7E-06 62.2 8.7 24 236-259 672-695 (918)
310 2xxa_A Signal recognition part 94.9 0.027 9.2E-07 59.0 6.0 62 211-272 74-139 (433)
311 2q6t_A DNAB replication FORK h 94.9 0.02 6.9E-07 60.1 5.1 39 233-271 196-238 (444)
312 1wb9_A DNA mismatch repair pro 94.9 0.088 3E-06 59.3 10.5 23 238-260 608-630 (800)
313 4edh_A DTMP kinase, thymidylat 94.8 0.019 6.6E-07 54.1 4.2 30 239-268 8-40 (213)
314 2atv_A RERG, RAS-like estrogen 94.8 0.059 2E-06 49.0 7.4 23 238-260 29-51 (196)
315 1q0u_A Bstdead; DEAD protein, 94.8 0.12 4.1E-06 48.0 9.7 17 238-254 42-58 (219)
316 3fe2_A Probable ATP-dependent 94.8 0.095 3.3E-06 49.7 9.1 54 198-254 27-83 (242)
317 1z0f_A RAB14, member RAS oncog 94.8 0.027 9.3E-07 49.9 4.8 24 238-261 16-39 (179)
318 2xau_A PRE-mRNA-splicing facto 94.7 0.071 2.4E-06 60.0 9.2 23 238-260 110-132 (773)
319 2gk6_A Regulator of nonsense t 94.7 0.016 5.5E-07 63.6 3.7 32 239-270 197-232 (624)
320 3lnc_A Guanylate kinase, GMP k 94.7 0.0094 3.2E-07 56.5 1.6 24 239-262 29-53 (231)
321 1p9r_A General secretion pathw 94.6 0.036 1.2E-06 57.8 6.0 56 199-268 143-201 (418)
322 3kkq_A RAS-related protein M-R 94.6 0.041 1.4E-06 49.2 5.6 22 239-260 20-41 (183)
323 1j8m_F SRP54, signal recogniti 94.6 0.033 1.1E-06 55.3 5.4 60 211-273 72-137 (297)
324 1sq5_A Pantothenate kinase; P- 94.6 0.026 8.9E-07 56.2 4.6 35 239-273 82-121 (308)
325 3dz8_A RAS-related protein RAB 94.5 0.027 9.1E-07 51.1 4.1 23 239-261 25-47 (191)
326 3v9p_A DTMP kinase, thymidylat 94.5 0.025 8.5E-07 54.0 4.0 29 240-268 28-63 (227)
327 2p5s_A RAS and EF-hand domain 94.5 0.039 1.3E-06 50.5 5.2 23 238-260 29-51 (199)
328 2f7s_A C25KG, RAS-related prot 94.5 0.084 2.9E-06 48.7 7.6 22 239-260 27-48 (217)
329 1bif_A 6-phosphofructo-2-kinas 94.5 0.014 4.7E-07 61.8 2.4 27 238-264 40-66 (469)
330 1zd9_A ADP-ribosylation factor 94.5 0.028 9.5E-07 50.9 4.2 22 239-260 24-45 (188)
331 2ffh_A Protein (FFH); SRP54, s 94.4 0.058 2E-06 56.3 7.1 59 211-271 74-135 (425)
332 4a1f_A DNAB helicase, replicat 94.4 0.029 9.8E-07 56.8 4.6 39 233-271 42-83 (338)
333 3thx_A DNA mismatch repair pro 94.4 0.089 3E-06 60.2 9.1 62 238-299 663-752 (934)
334 4i1u_A Dephospho-COA kinase; s 94.4 0.02 6.8E-07 54.0 3.1 31 239-270 11-41 (210)
335 3kta_A Chromosome segregation 94.4 0.02 6.8E-07 51.8 3.1 24 239-262 28-51 (182)
336 2h57_A ADP-ribosylation factor 94.4 0.015 5.1E-07 52.7 2.1 23 239-261 23-45 (190)
337 2va8_A SSO2462, SKI2-type heli 94.4 0.18 6.3E-06 55.8 11.4 19 237-255 46-64 (715)
338 1rj9_A FTSY, signal recognitio 94.4 0.027 9.3E-07 56.1 4.2 25 237-261 102-126 (304)
339 3p32_A Probable GTPase RV1496/ 94.3 0.037 1.3E-06 56.3 5.1 33 239-271 81-116 (355)
340 1p5z_B DCK, deoxycytidine kina 94.3 0.0089 3E-07 57.9 0.5 24 239-262 26-49 (263)
341 2dyk_A GTP-binding protein; GT 94.3 0.024 8.3E-07 49.3 3.3 22 239-260 3-24 (161)
342 1z2a_A RAS-related protein RAB 94.3 0.022 7.5E-07 49.9 3.0 23 238-260 6-28 (168)
343 3aez_A Pantothenate kinase; tr 94.3 0.026 8.9E-07 56.5 3.8 24 239-262 92-115 (312)
344 3iuy_A Probable ATP-dependent 94.3 0.28 9.5E-06 45.8 10.8 17 238-254 58-74 (228)
345 1zbd_A Rabphilin-3A; G protein 94.3 0.03 1E-06 51.2 3.9 23 238-260 9-31 (203)
346 3oes_A GTPase rhebl1; small GT 94.3 0.039 1.3E-06 50.5 4.8 22 239-260 26-47 (201)
347 2il1_A RAB12; G-protein, GDP, 94.2 0.037 1.3E-06 50.3 4.6 21 239-259 28-48 (192)
348 2gf0_A GTP-binding protein DI- 94.2 0.042 1.4E-06 49.8 4.9 21 239-259 10-30 (199)
349 2ocp_A DGK, deoxyguanosine kin 94.2 0.024 8E-07 54.1 3.3 24 239-262 4-27 (241)
350 2f9l_A RAB11B, member RAS onco 94.2 0.024 8.1E-07 52.0 3.2 22 239-260 7-28 (199)
351 1lw7_A Transcriptional regulat 94.2 0.023 7.9E-07 57.9 3.3 28 237-264 170-197 (365)
352 2fh5_B SR-beta, signal recogni 94.2 0.042 1.4E-06 50.7 4.9 23 238-260 8-30 (214)
353 2fg5_A RAB-22B, RAS-related pr 94.2 0.028 9.6E-07 51.1 3.5 22 239-260 25-46 (192)
354 3bgw_A DNAB-like replicative h 94.2 0.031 1.1E-06 58.7 4.4 39 233-271 193-234 (444)
355 1q57_A DNA primase/helicase; d 94.1 0.029 9.8E-07 59.8 4.1 39 233-271 238-280 (503)
356 2oap_1 GSPE-2, type II secreti 94.1 0.018 6.3E-07 61.6 2.4 25 238-262 261-285 (511)
357 3b85_A Phosphate starvation-in 94.1 0.02 7E-07 53.8 2.4 22 239-260 24-45 (208)
358 1oix_A RAS-related protein RAB 94.1 0.023 7.9E-07 51.9 2.7 23 239-261 31-53 (191)
359 3vlf_B 26S protease regulatory 94.1 0.029 9.8E-07 45.2 3.0 45 397-444 2-46 (88)
360 3tmk_A Thymidylate kinase; pho 94.0 0.038 1.3E-06 52.3 4.2 30 239-268 7-36 (216)
361 1fzq_A ADP-ribosylation factor 94.0 0.048 1.6E-06 49.2 4.7 23 238-260 17-39 (181)
362 4f4c_A Multidrug resistance pr 94.0 0.043 1.5E-06 65.4 5.5 28 235-262 442-469 (1321)
363 2onk_A Molybdate/tungstate ABC 94.0 0.024 8.1E-07 54.5 2.7 25 238-262 25-49 (240)
364 1g8f_A Sulfate adenylyltransfe 94.0 0.033 1.1E-06 59.5 4.0 26 238-263 396-421 (511)
365 1w36_D RECD, exodeoxyribonucle 93.9 0.03 1E-06 61.3 3.7 24 238-261 165-188 (608)
366 3sop_A Neuronal-specific septi 93.9 0.027 9.1E-07 55.1 2.9 24 239-262 4-27 (270)
367 2wjy_A Regulator of nonsense t 93.8 0.031 1E-06 63.1 3.7 23 239-261 373-395 (800)
368 2pcj_A ABC transporter, lipopr 93.8 0.019 6.4E-07 54.6 1.7 24 239-262 32-55 (224)
369 2hup_A RAS-related protein RAB 93.8 0.08 2.8E-06 48.5 6.0 21 239-259 31-51 (201)
370 1wms_A RAB-9, RAB9, RAS-relate 93.8 0.033 1.1E-06 49.4 3.3 22 239-260 9-30 (177)
371 3lv8_A DTMP kinase, thymidylat 93.8 0.029 9.9E-07 53.8 3.0 23 239-261 29-51 (236)
372 3l0o_A Transcription terminati 93.8 0.087 3E-06 54.2 6.6 22 240-261 178-199 (427)
373 2cbz_A Multidrug resistance-as 93.8 0.023 7.7E-07 54.5 2.2 23 239-261 33-55 (237)
374 3tif_A Uncharacterized ABC tra 93.8 0.023 7.9E-07 54.4 2.2 24 239-262 33-56 (235)
375 1z08_A RAS-related protein RAB 93.8 0.035 1.2E-06 48.8 3.3 22 239-260 8-29 (170)
376 3cr8_A Sulfate adenylyltranfer 93.7 0.024 8.2E-07 61.2 2.5 24 239-262 371-394 (552)
377 2zj8_A DNA helicase, putative 93.7 0.29 9.8E-06 54.3 11.4 18 237-254 39-56 (720)
378 2wji_A Ferrous iron transport 93.7 0.027 9.1E-07 50.0 2.4 21 239-259 5-25 (165)
379 1ky3_A GTP-binding protein YPT 93.7 0.036 1.2E-06 49.2 3.3 23 238-260 9-31 (182)
380 1ls1_A Signal recognition part 93.7 0.11 3.8E-06 51.4 7.1 35 237-271 98-135 (295)
381 2nzj_A GTP-binding protein REM 93.7 0.028 9.6E-07 49.7 2.5 21 239-259 6-26 (175)
382 1sgw_A Putative ABC transporte 93.7 0.025 8.5E-07 53.4 2.2 24 239-262 37-60 (214)
383 2www_A Methylmalonic aciduria 93.7 0.05 1.7E-06 55.2 4.6 23 239-261 76-98 (349)
384 2qm8_A GTPase/ATPase; G protei 93.6 0.06 2E-06 54.4 5.1 30 239-268 57-89 (337)
385 1yrb_A ATP(GTP)binding protein 93.6 0.058 2E-06 51.6 4.9 33 239-271 16-50 (262)
386 1g16_A RAS-related protein SEC 93.6 0.031 1.1E-06 49.0 2.7 22 239-260 5-26 (170)
387 1b0u_A Histidine permease; ABC 93.5 0.027 9.2E-07 54.8 2.2 24 239-262 34-57 (262)
388 2d2e_A SUFC protein; ABC-ATPas 93.5 0.032 1.1E-06 53.9 2.7 22 239-260 31-52 (250)
389 2zej_A Dardarin, leucine-rich 93.5 0.026 8.9E-07 51.0 1.9 21 239-259 4-24 (184)
390 1g6h_A High-affinity branched- 93.5 0.027 9.4E-07 54.6 2.2 24 239-262 35-58 (257)
391 1zj6_A ADP-ribosylation factor 93.5 0.04 1.4E-06 49.7 3.2 22 238-259 17-38 (187)
392 2zu0_C Probable ATP-dependent 93.4 0.034 1.2E-06 54.3 2.7 23 239-261 48-70 (267)
393 2pze_A Cystic fibrosis transme 93.4 0.029 1E-06 53.4 2.2 24 239-262 36-59 (229)
394 2xzl_A ATP-dependent helicase 93.4 0.04 1.4E-06 62.2 3.7 34 239-272 377-414 (802)
395 3aji_B S6C, proteasome (prosom 93.4 0.055 1.9E-06 42.8 3.5 45 397-444 2-46 (83)
396 2hxs_A RAB-26, RAS-related pro 93.4 0.038 1.3E-06 49.0 2.8 21 239-259 8-28 (178)
397 3clv_A RAB5 protein, putative; 93.4 0.043 1.5E-06 49.5 3.3 22 239-260 9-30 (208)
398 1upt_A ARL1, ADP-ribosylation 93.4 0.044 1.5E-06 48.2 3.2 22 238-259 8-29 (171)
399 2wjg_A FEOB, ferrous iron tran 93.3 0.037 1.3E-06 49.7 2.7 22 239-260 9-30 (188)
400 1mv5_A LMRA, multidrug resista 93.3 0.029 9.9E-07 53.9 2.0 24 239-262 30-53 (243)
401 2f1r_A Molybdopterin-guanine d 93.3 0.023 8E-07 51.6 1.3 24 239-262 4-27 (171)
402 2ff7_A Alpha-hemolysin translo 93.3 0.03 1E-06 54.0 2.2 24 239-262 37-60 (247)
403 3gfo_A Cobalt import ATP-bindi 93.3 0.03 1E-06 54.9 2.2 24 239-262 36-59 (275)
404 3t34_A Dynamin-related protein 93.3 0.3 1E-05 49.3 9.7 21 239-259 36-56 (360)
405 3q85_A GTP-binding protein REM 93.3 0.044 1.5E-06 48.1 3.0 20 240-259 5-24 (169)
406 2y8e_A RAB-protein 6, GH09086P 93.2 0.039 1.3E-06 48.8 2.7 22 239-260 16-37 (179)
407 1ji0_A ABC transporter; ATP bi 93.2 0.031 1.1E-06 53.6 2.2 24 239-262 34-57 (240)
408 2qi9_C Vitamin B12 import ATP- 93.2 0.032 1.1E-06 53.9 2.2 25 239-263 28-52 (249)
409 1svi_A GTP-binding protein YSX 93.2 0.022 7.4E-07 51.7 0.9 23 238-260 24-46 (195)
410 2qe7_A ATP synthase subunit al 93.2 0.12 4.2E-06 54.6 6.8 29 240-268 165-194 (502)
411 1f2t_A RAD50 ABC-ATPase; DNA d 93.2 0.044 1.5E-06 48.5 2.9 22 240-261 26-47 (149)
412 2ghi_A Transport protein; mult 93.2 0.033 1.1E-06 54.2 2.2 24 239-262 48-71 (260)
413 1tf7_A KAIC; homohexamer, hexa 93.2 0.037 1.3E-06 59.3 2.9 29 233-261 277-305 (525)
414 3fvq_A Fe(3+) IONS import ATP- 93.2 0.032 1.1E-06 57.0 2.2 24 239-262 32-55 (359)
415 2o8b_B DNA mismatch repair pro 93.2 0.089 3.1E-06 60.9 6.2 21 237-257 789-809 (1022)
416 1z47_A CYSA, putative ABC-tran 93.1 0.038 1.3E-06 56.3 2.7 24 239-262 43-66 (355)
417 1tf7_A KAIC; homohexamer, hexa 93.1 0.037 1.3E-06 59.3 2.8 38 233-270 35-76 (525)
418 2olj_A Amino acid ABC transpor 93.1 0.034 1.2E-06 54.2 2.3 24 239-262 52-75 (263)
419 3vkw_A Replicase large subunit 93.1 0.06 2.1E-06 56.4 4.2 24 237-260 161-184 (446)
420 2it1_A 362AA long hypothetical 93.1 0.039 1.3E-06 56.4 2.7 23 239-261 31-53 (362)
421 3rlf_A Maltose/maltodextrin im 93.1 0.039 1.3E-06 56.7 2.7 24 239-262 31-54 (381)
422 2obl_A ESCN; ATPase, hydrolase 93.1 0.067 2.3E-06 54.3 4.4 30 239-268 73-102 (347)
423 4tmk_A Protein (thymidylate ki 93.1 0.047 1.6E-06 51.5 3.0 23 239-261 5-27 (213)
424 1vpl_A ABC transporter, ATP-bi 93.0 0.035 1.2E-06 53.9 2.2 24 239-262 43-66 (256)
425 2gza_A Type IV secretion syste 93.0 0.025 8.4E-07 57.8 1.1 25 238-262 176-200 (361)
426 3ld9_A DTMP kinase, thymidylat 93.0 0.054 1.9E-06 51.5 3.5 29 239-267 23-55 (223)
427 2yyz_A Sugar ABC transporter, 93.0 0.04 1.4E-06 56.3 2.7 24 239-262 31-54 (359)
428 2ixe_A Antigen peptide transpo 93.0 0.035 1.2E-06 54.3 2.2 24 239-262 47-70 (271)
429 2lkc_A Translation initiation 93.0 0.054 1.9E-06 48.0 3.3 22 238-259 9-30 (178)
430 2ihy_A ABC transporter, ATP-bi 93.0 0.036 1.2E-06 54.5 2.2 24 239-262 49-72 (279)
431 1v43_A Sugar-binding transport 93.0 0.041 1.4E-06 56.4 2.7 24 239-262 39-62 (372)
432 4g1u_C Hemin import ATP-bindin 93.0 0.035 1.2E-06 54.2 2.0 24 239-262 39-62 (266)
433 2fn4_A P23, RAS-related protei 93.0 0.046 1.6E-06 48.4 2.7 23 238-260 10-32 (181)
434 2nq2_C Hypothetical ABC transp 93.0 0.036 1.2E-06 53.6 2.2 24 239-262 33-56 (253)
435 2wsm_A Hydrogenase expression/ 92.9 0.049 1.7E-06 50.6 3.0 25 238-262 31-55 (221)
436 2gf9_A RAS-related protein RAB 92.9 0.055 1.9E-06 48.9 3.2 22 239-260 24-45 (189)
437 2bme_A RAB4A, RAS-related prot 92.9 0.046 1.6E-06 48.9 2.7 22 239-260 12-33 (186)
438 2gks_A Bifunctional SAT/APS ki 92.9 0.073 2.5E-06 57.4 4.7 31 239-269 374-407 (546)
439 1m7b_A RND3/RHOE small GTP-bin 92.9 0.047 1.6E-06 49.1 2.7 22 239-260 9-30 (184)
440 1g29_1 MALK, maltose transport 92.9 0.043 1.5E-06 56.3 2.7 23 239-261 31-53 (372)
441 2g6b_A RAS-related protein RAB 92.9 0.057 1.9E-06 47.9 3.2 22 239-260 12-33 (180)
442 3tw8_B RAS-related protein RAB 92.8 0.053 1.8E-06 48.0 2.9 21 239-259 11-31 (181)
443 2pt7_A CAG-ALFA; ATPase, prote 92.8 0.031 1.1E-06 56.3 1.5 25 238-262 172-196 (330)
444 1mh1_A RAC1; GTP-binding, GTPa 92.8 0.058 2E-06 48.0 3.2 22 239-260 7-28 (186)
445 2yz2_A Putative ABC transporte 92.8 0.04 1.4E-06 53.7 2.2 24 239-262 35-58 (266)
446 2gj8_A MNME, tRNA modification 92.8 0.042 1.4E-06 49.2 2.2 22 239-260 6-27 (172)
447 2pjz_A Hypothetical protein ST 92.7 0.041 1.4E-06 53.6 2.2 23 239-261 32-54 (263)
448 3d31_A Sulfate/molybdate ABC t 92.7 0.036 1.2E-06 56.3 1.8 24 239-262 28-51 (348)
449 1xx6_A Thymidine kinase; NESG, 92.7 0.12 4E-06 47.9 5.1 31 239-269 10-43 (191)
450 3def_A T7I23.11 protein; chlor 92.7 0.13 4.4E-06 49.6 5.7 24 238-261 37-60 (262)
451 4hlc_A DTMP kinase, thymidylat 92.7 0.1 3.5E-06 48.8 4.7 29 240-268 5-35 (205)
452 1z06_A RAS-related protein RAB 92.6 0.064 2.2E-06 48.4 3.3 22 239-260 22-43 (189)
453 3bwd_D RAC-like GTP-binding pr 92.6 0.064 2.2E-06 47.7 3.2 23 238-260 9-31 (182)
454 2dpy_A FLII, flagellum-specifi 92.6 0.083 2.8E-06 55.4 4.4 29 240-268 160-188 (438)
455 3c5c_A RAS-like protein 12; GD 92.6 0.066 2.2E-06 48.5 3.3 22 239-260 23-44 (187)
456 4ag6_A VIRB4 ATPase, type IV s 92.6 0.12 4.1E-06 52.9 5.6 34 238-271 36-72 (392)
457 2db3_A ATP-dependent RNA helic 92.5 0.84 2.9E-05 47.2 12.1 51 200-253 56-109 (434)
458 1fx0_A ATP synthase alpha chai 92.5 0.12 4.2E-06 54.7 5.6 29 240-268 166-195 (507)
459 1vg8_A RAS-related protein RAB 92.5 0.066 2.3E-06 48.8 3.3 23 239-261 10-32 (207)
460 3b1v_A Ferrous iron uptake tra 92.5 0.15 5E-06 49.9 5.9 22 239-260 5-26 (272)
461 1knx_A Probable HPR(Ser) kinas 92.5 0.051 1.7E-06 54.3 2.5 29 237-266 147-175 (312)
462 2cxx_A Probable GTP-binding pr 92.5 0.042 1.4E-06 49.3 1.8 22 239-260 3-24 (190)
463 2iwr_A Centaurin gamma 1; ANK 92.5 0.051 1.8E-06 48.3 2.3 22 239-260 9-30 (178)
464 2p67_A LAO/AO transport system 92.5 0.096 3.3E-06 52.8 4.6 33 238-270 57-92 (341)
465 2rcn_A Probable GTPase ENGC; Y 92.4 0.095 3.2E-06 53.4 4.5 24 239-262 217-240 (358)
466 2a5j_A RAS-related protein RAB 92.4 0.068 2.3E-06 48.4 3.2 22 239-260 23-44 (191)
467 3cph_A RAS-related protein SEC 92.4 0.069 2.4E-06 49.0 3.2 23 238-260 21-43 (213)
468 1m2o_B GTP-binding protein SAR 92.4 0.059 2E-06 49.0 2.7 21 239-259 25-45 (190)
469 3ihw_A Centg3; RAS, centaurin, 92.4 0.072 2.5E-06 48.2 3.3 22 239-260 22-43 (184)
470 3reg_A RHO-like small GTPase; 92.3 0.072 2.5E-06 48.2 3.2 22 239-260 25-46 (194)
471 1u0l_A Probable GTPase ENGC; p 92.3 0.072 2.5E-06 52.8 3.4 24 239-262 171-194 (301)
472 1pui_A ENGB, probable GTP-bind 92.3 0.022 7.7E-07 52.4 -0.4 22 239-260 28-49 (210)
473 2r9v_A ATP synthase subunit al 92.3 0.12 3.9E-06 55.0 5.0 29 240-268 178-207 (515)
474 1ko7_A HPR kinase/phosphatase; 92.3 0.07 2.4E-06 53.3 3.2 28 237-265 144-171 (314)
475 1qhl_A Protein (cell division 92.2 0.025 8.7E-07 53.9 -0.1 23 240-262 30-52 (227)
476 1oxx_K GLCV, glucose, ABC tran 92.2 0.036 1.2E-06 56.5 1.0 23 239-261 33-55 (353)
477 3k53_A Ferrous iron transport 92.2 0.054 1.8E-06 52.6 2.2 23 238-260 4-26 (271)
478 3pqc_A Probable GTP-binding pr 92.2 0.029 9.7E-07 50.6 0.2 23 238-260 24-46 (195)
479 3t5g_A GTP-binding protein RHE 92.2 0.067 2.3E-06 47.7 2.7 21 239-259 8-28 (181)
480 2orv_A Thymidine kinase; TP4A 92.2 0.88 3E-05 43.3 10.6 31 239-269 21-54 (234)
481 2bcg_Y Protein YP2, GTP-bindin 92.1 0.066 2.2E-06 49.0 2.7 22 239-260 10-31 (206)
482 3gj0_A GTP-binding nuclear pro 92.1 0.055 1.9E-06 50.3 2.2 23 239-261 17-40 (221)
483 3vr4_A V-type sodium ATPase ca 92.1 0.33 1.1E-05 52.2 8.3 29 240-268 235-263 (600)
484 2yv5_A YJEQ protein; hydrolase 92.1 0.098 3.4E-06 51.9 4.1 23 239-262 167-189 (302)
485 1ksh_A ARF-like protein 2; sma 92.1 0.058 2E-06 48.4 2.2 23 238-260 19-41 (186)
486 2hf9_A Probable hydrogenase ni 92.1 0.073 2.5E-06 49.6 3.0 24 238-261 39-62 (226)
487 2qtf_A Protein HFLX, GTP-bindi 92.0 0.12 4.1E-06 52.8 4.7 21 240-260 182-202 (364)
488 4dkx_A RAS-related protein RAB 92.0 0.14 4.8E-06 48.1 4.8 20 240-259 16-35 (216)
489 4f4c_A Multidrug resistance pr 92.0 0.13 4.5E-06 61.2 5.7 24 238-261 1106-1129(1321)
490 3lxx_A GTPase IMAP family memb 92.0 0.07 2.4E-06 50.5 2.7 23 238-260 30-52 (239)
491 2fu5_C RAS-related protein RAB 92.0 0.049 1.7E-06 48.6 1.6 23 238-260 9-31 (183)
492 3oaa_A ATP synthase subunit al 92.0 0.18 6.2E-06 53.3 6.0 28 240-267 165-193 (513)
493 3gd7_A Fusion complex of cysti 91.9 0.057 1.9E-06 55.8 2.2 23 239-261 49-71 (390)
494 1tq4_A IIGP1, interferon-induc 91.9 0.13 4.3E-06 53.5 4.8 23 239-261 71-93 (413)
495 1gwn_A RHO-related GTP-binding 91.8 0.075 2.6E-06 49.1 2.7 22 239-260 30-51 (205)
496 1dek_A Deoxynucleoside monopho 91.8 0.082 2.8E-06 50.9 2.9 26 240-265 4-29 (241)
497 2qag_B Septin-6, protein NEDD5 91.8 0.077 2.6E-06 55.3 3.0 21 240-260 45-65 (427)
498 2vp4_A Deoxynucleoside kinase; 91.8 0.067 2.3E-06 50.6 2.3 28 240-268 23-50 (230)
499 2b6h_A ADP-ribosylation factor 91.8 0.085 2.9E-06 48.0 3.0 22 238-259 30-51 (192)
500 2npi_A Protein CLP1; CLP1-PCF1 91.7 0.073 2.5E-06 56.1 2.8 25 237-261 138-162 (460)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-41 Score=351.78 Aligned_cols=216 Identities=27% Similarity=0.340 Sum_probs=184.3
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecccc-
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVH- 274 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~- 274 (517)
..+..+|++|+|.+++|++|.+.+...++.++.|.+.|+++++|+|||||||||||+||+|+|++++.+|+.++++++.
T Consensus 141 ~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~s 220 (405)
T 4b4t_J 141 KVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQ 220 (405)
T ss_dssp CSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSC
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhc
Confidence 3456799999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred -----ChHHHHHHHHhc--cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHH
Q 010133 275 -----NNSELRKLLMKT--SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITL 347 (517)
Q Consensus 275 -----~~~~L~~lf~~~--~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 347 (517)
++..++.+|..+ ..||||||||||+++. ++. ....+.+.....++
T Consensus 221 k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~---~R~-------------------------~~~~~~~~~~~~~l 272 (405)
T 4b4t_J 221 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS---TRV-------------------------EGSGGGDSEVQRTM 272 (405)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTT---SCS-------------------------CSSSGGGGHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhCCceEeeecchhhcc---CCC-------------------------CCCCCCcHHHHHHH
Confidence 356799999876 4899999999999852 111 00011223456789
Q ss_pred HHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHh
Q 010133 348 SGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDV 427 (517)
Q Consensus 348 s~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l 427 (517)
++||+.|||+.+. .+++||+|||+|+.|||||+||||||++|+|++|+.++|..|++.++...... .+..++.|++.
T Consensus 273 ~~lL~~lDg~~~~--~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dvdl~~lA~~ 349 (405)
T 4b4t_J 273 LELLNQLDGFETS--KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RGINLRKVAEK 349 (405)
T ss_dssp HHHHHHHHTTTCC--CCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SSCCHHHHHHH
T ss_pred HHHHHhhhccCCC--CCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHH
Confidence 9999999999764 45999999999999999999999999999999999999999999998765432 13357778776
Q ss_pred hCCCCCCHHHHHHHHHH
Q 010133 428 VGKAEMTPADISEVLIK 444 (517)
Q Consensus 428 ~~~~~~spadi~~~l~~ 444 (517)
+.|||+|||..+|..
T Consensus 350 --t~G~SGADi~~l~~e 364 (405)
T 4b4t_J 350 --MNGCSGADVKGVCTE 364 (405)
T ss_dssp --CCSCCHHHHHHHHHH
T ss_pred --CCCCCHHHHHHHHHH
Confidence 789999999998863
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-41 Score=351.98 Aligned_cols=216 Identities=25% Similarity=0.334 Sum_probs=184.3
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecccc-
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVH- 274 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~- 274 (517)
..+..+|++|+|.+++|++|.+.+..+++.+++|...|+++++|||||||||||||+||+|+|++++.+|+.++++++.
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~s 254 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ 254 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCC
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhh
Confidence 3456799999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred -----ChHHHHHHHHhc--cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHH
Q 010133 275 -----NNSELRKLLMKT--SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITL 347 (517)
Q Consensus 275 -----~~~~L~~lf~~~--~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 347 (517)
++..++.+|..+ ..||||||||||+++. .|.. ...+.+.....++
T Consensus 255 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~---~R~~-------------------------~~~~~~~~~~~~l 306 (437)
T 4b4t_I 255 KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGT---KRYD-------------------------SNSGGEREIQRTM 306 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSC---CCSC-------------------------SSCSSCCHHHHHH
T ss_pred ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcc---cCCC-------------------------CCCCccHHHHHHH
Confidence 356688999876 4899999999999852 2210 0111234467899
Q ss_pred HHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHh
Q 010133 348 SGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDV 427 (517)
Q Consensus 348 s~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l 427 (517)
++||+.|||+.+. ++++||+|||+++.|||||+||||||++|+|++|+.++|..||+.|+...... .+..++.|+..
T Consensus 307 ~~LL~~lDg~~~~--~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~-~dvdl~~LA~~ 383 (437)
T 4b4t_I 307 LELLNQLDGFDDR--GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLS-EDVNLETLVTT 383 (437)
T ss_dssp HHHHHHHHHCCCS--SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBC-SCCCHHHHHHH
T ss_pred HHHHHHhhCcCCC--CCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCC-CcCCHHHHHHh
Confidence 9999999999654 56999999999999999999999999999999999999999999998765422 13357778776
Q ss_pred hCCCCCCHHHHHHHHHH
Q 010133 428 VGKAEMTPADISEVLIK 444 (517)
Q Consensus 428 ~~~~~~spadi~~~l~~ 444 (517)
+.|||+|||..+|..
T Consensus 384 --T~GfSGADI~~l~~e 398 (437)
T 4b4t_I 384 --KDDLSGADIQAMCTE 398 (437)
T ss_dssp --CCSCCHHHHHHHHHH
T ss_pred --CCCCCHHHHHHHHHH
Confidence 789999999998864
No 3
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-41 Score=353.69 Aligned_cols=217 Identities=25% Similarity=0.299 Sum_probs=183.8
Q ss_pred ccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecccc
Q 010133 195 SFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVH 274 (517)
Q Consensus 195 ~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~ 274 (517)
...++.+|++|+|.+++|++|.+.+..++..++.|.+.|+++++|+|||||||||||+||+|+|++++.+|+.++++++.
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 44567799999999999999999999999999999999999999999999999999999999999999999999999884
Q ss_pred ------ChHHHHHHHHhc--cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhH
Q 010133 275 ------NNSELRKLLMKT--SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSIT 346 (517)
Q Consensus 275 ------~~~~L~~lf~~~--~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (517)
+...++.+|..+ ..||||||||||+++...... ..+.......+
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~----------------------------~~~~~~~~~~~ 304 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDS----------------------------EKSGDREVQRT 304 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSG----------------------------GGGTTHHHHHH
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCC----------------------------CCCCchHHHHH
Confidence 356688999766 489999999999986211110 01112345678
Q ss_pred HHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHH
Q 010133 347 LSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELED 426 (517)
Q Consensus 347 ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~ 426 (517)
++.||+.|||+.+. ++++||+|||+|+.|||||+||||||.+|+|++|+.++|..||+.|+...... .+..++.|++
T Consensus 305 ~~~lL~~ldg~~~~--~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~dvdl~~lA~ 381 (434)
T 4b4t_M 305 MLELLNQLDGFSSD--DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD-DDINWQELAR 381 (434)
T ss_dssp HHHHHHHHTTSCSS--CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC-SCCCHHHHHH
T ss_pred HHHHHHHhhccCCC--CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCC-CcCCHHHHHH
Confidence 99999999999764 45899999999999999999999999999999999999999999987544321 1234677777
Q ss_pred hhCCCCCCHHHHHHHHHH
Q 010133 427 VVGKAEMTPADISEVLIK 444 (517)
Q Consensus 427 l~~~~~~spadi~~~l~~ 444 (517)
. +.|||+|||..+|..
T Consensus 382 ~--t~G~sGADi~~l~~e 397 (434)
T 4b4t_M 382 S--TDEFNGAQLKAVTVE 397 (434)
T ss_dssp H--CSSCCHHHHHHHHHH
T ss_pred h--CCCCCHHHHHHHHHH
Confidence 6 789999999998864
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-40 Score=349.20 Aligned_cols=216 Identities=24% Similarity=0.305 Sum_probs=183.4
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecccc-
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVH- 274 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~- 274 (517)
..+..+|++|+|.+++|++|.+.+..+++.++.|.+.|+++++|+|||||||||||+||+|||++++.+++.++++++.
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred -----ChHHHHHHHHhc--cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHH
Q 010133 275 -----NNSELRKLLMKT--SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITL 347 (517)
Q Consensus 275 -----~~~~L~~lf~~~--~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 347 (517)
+...++.+|..+ ..||||||||||+++. +|.. .+...+.....++
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~---~R~~-------------------------~~~~~~~~~~~~l 305 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGG---RRFS-------------------------EGTSADREIQRTL 305 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSC---CCSS-------------------------SCCSSTTHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcCCceeeeeccccccc---cccc-------------------------CCCCcchHHHHHH
Confidence 345688888776 4899999999999852 2210 0011233457789
Q ss_pred HHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHh
Q 010133 348 SGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDV 427 (517)
Q Consensus 348 s~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l 427 (517)
++||+.|||+.+. ++++||+|||+|+.|||||+||||||.+|+|++|+.++|..||+.|+...... .+..++.++..
T Consensus 306 ~~lL~~lDg~~~~--~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~~ 382 (437)
T 4b4t_L 306 MELLTQMDGFDNL--GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKM 382 (437)
T ss_dssp HHHHHHHHSSSCT--TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHHT
T ss_pred HHHHHHhhcccCC--CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHHHHHHh
Confidence 9999999999764 45999999999999999999999999999999999999999999998654322 13346777776
Q ss_pred hCCCCCCHHHHHHHHHH
Q 010133 428 VGKAEMTPADISEVLIK 444 (517)
Q Consensus 428 ~~~~~~spadi~~~l~~ 444 (517)
+.|||+|||..+|..
T Consensus 383 --t~G~sGADi~~l~~e 397 (437)
T 4b4t_L 383 --SDGFNGADIRNCATE 397 (437)
T ss_dssp --CCSCCHHHHHHHHHH
T ss_pred --CCCCCHHHHHHHHHH
Confidence 799999999998863
No 5
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7e-40 Score=344.71 Aligned_cols=216 Identities=25% Similarity=0.313 Sum_probs=183.7
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecccc-
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVH- 274 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~- 274 (517)
..+..+|++|+|.+++|++|.+.+..++..+++|.+.|++++||+|||||||||||+||+|+|++++.+++.++++++.
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhc
Confidence 3456799999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred -----ChHHHHHHHHhc--cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHH
Q 010133 275 -----NNSELRKLLMKT--SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITL 347 (517)
Q Consensus 275 -----~~~~L~~lf~~~--~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 347 (517)
+...++.+|..+ ..||||||||||+++...... ..+.+.....++
T Consensus 245 ~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~----------------------------~~~~~~~~~r~l 296 (428)
T 4b4t_K 245 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDA----------------------------QTGSDREVQRIL 296 (428)
T ss_dssp SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSS----------------------------CSCCCCHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCC----------------------------CCCCChHHHHHH
Confidence 356789999876 489999999999986211110 111234567899
Q ss_pred HHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEecc-CCCHHHHHHHHHHhcCCCCCCCChHhHHHHHH
Q 010133 348 SGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMS-YCSYPALLILLKNYLGYEESDLEDETLKELED 426 (517)
Q Consensus 348 s~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~-~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~ 426 (517)
++||+.|||+.+. .+++||+|||+++.|||||+||||||++|+|+ +|+.++|..|++.++...... .+..++.|+.
T Consensus 297 ~~lL~~ldg~~~~--~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-~~~dl~~lA~ 373 (428)
T 4b4t_K 297 IELLTQMDGFDQS--TNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-PEADLDSLII 373 (428)
T ss_dssp HHHHHHHHHSCSS--CSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-TTCCHHHHHH
T ss_pred HHHHHHhhCCCCC--CCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHH
Confidence 9999999999775 45999999999999999999999999999996 899999999999998654321 1334777777
Q ss_pred hhCCCCCCHHHHHHHHHH
Q 010133 427 VVGKAEMTPADISEVLIK 444 (517)
Q Consensus 427 l~~~~~~spadi~~~l~~ 444 (517)
. +.|||+|||..+|..
T Consensus 374 ~--t~G~sgadi~~l~~e 389 (428)
T 4b4t_K 374 R--NDSLSGAVIAAIMQE 389 (428)
T ss_dssp H--TTTCCHHHHHHHHHH
T ss_pred H--CCCCCHHHHHHHHHH
Confidence 6 789999999998864
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.8e-40 Score=343.65 Aligned_cols=217 Identities=22% Similarity=0.239 Sum_probs=184.1
Q ss_pred ccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecccc
Q 010133 195 SFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVH 274 (517)
Q Consensus 195 ~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~ 274 (517)
...+..+|++|+|.+++|++|.+.+..++..++.|.++|+++++|+|||||||||||+||+|||++++.+|+.++++++.
T Consensus 201 ~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~ 280 (467)
T 4b4t_H 201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELV 280 (467)
T ss_dssp ESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhh
Confidence 34556799999999999999999999999999999999999999999999999999999999999999999999999884
Q ss_pred ------ChHHHHHHHHhc--cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhH
Q 010133 275 ------NNSELRKLLMKT--SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSIT 346 (517)
Q Consensus 275 ------~~~~L~~lf~~~--~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (517)
++..++.+|..+ ..||||||||||+++. .|.. ...+.......+
T Consensus 281 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~---~R~~-------------------------~~~~~~~~~~~~ 332 (467)
T 4b4t_H 281 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGG---ARFD-------------------------DGAGGDNEVQRT 332 (467)
T ss_dssp CCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSB---CCSS-------------------------SSCGGGGHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHhcCCceEeecccccccc---cccC-------------------------cCCCccHHHHHH
Confidence 356789999876 4899999999999852 2210 001112345678
Q ss_pred HHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHH
Q 010133 347 LSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELED 426 (517)
Q Consensus 347 ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~ 426 (517)
++.||+.|||+.+. .+++||+|||+++.|||||+||||||++|+|++|+.++|..||+.++....... +..++.|++
T Consensus 333 l~~lL~~lDg~~~~--~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~-dvdl~~LA~ 409 (467)
T 4b4t_H 333 MLELITQLDGFDPR--GNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVER-GIRWELISR 409 (467)
T ss_dssp HHHHHHHHHSSCCT--TTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCS-SCCHHHHHH
T ss_pred HHHHHHHhhccCCC--CcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCC-CCCHHHHHH
Confidence 99999999999654 569999999999999999999999999999999999999999999987654321 234677877
Q ss_pred hhCCCCCCHHHHHHHHHH
Q 010133 427 VVGKAEMTPADISEVLIK 444 (517)
Q Consensus 427 l~~~~~~spadi~~~l~~ 444 (517)
. +.|||+|||..+|..
T Consensus 410 ~--T~GfSGADI~~l~~e 425 (467)
T 4b4t_H 410 L--CPNSTGAELRSVCTE 425 (467)
T ss_dssp H--CCSCCHHHHHHHHHH
T ss_pred H--CCCCCHHHHHHHHHH
Confidence 6 789999999998863
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=5.9e-36 Score=335.57 Aligned_cols=216 Identities=22% Similarity=0.352 Sum_probs=161.3
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccc---
Q 010133 197 KHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEV--- 273 (517)
Q Consensus 197 ~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~--- 273 (517)
.+..+|++++|.++.|++|.+.+...++.++.|.+.|+.+++|+|||||||||||++|+|+|++++.+++.++.+++
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~ 550 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTT
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcc
Confidence 45568999999999999999999999999999999999999999999999999999999999999999999998886
Q ss_pred ---cChHHHHHHHHhcc--CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHH
Q 010133 274 ---HNNSELRKLLMKTS--SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLS 348 (517)
Q Consensus 274 ---~~~~~L~~lf~~~~--~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 348 (517)
.++..++.+|..+. .||||||||||+++..++... .+.+....+.++
T Consensus 551 ~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~----------------------------~~~~~~~~rv~~ 602 (806)
T 3cf2_A 551 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNI----------------------------GDGGGAADRVIN 602 (806)
T ss_dssp TCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC------------------------------------------CHHHH
T ss_pred ccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCC----------------------------CCCchHHHHHHH
Confidence 36778999998874 799999999999863211110 112334668899
Q ss_pred HHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhh
Q 010133 349 GLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDVV 428 (517)
Q Consensus 349 ~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~ 428 (517)
+||++|||+.+. .+++||+|||+|+.|||||+||||||++|++++|+.++|..|++.++...... .+..++.|++.
T Consensus 603 ~lL~~mdg~~~~--~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~dl~~la~~- 678 (806)
T 3cf2_A 603 QILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKM- 678 (806)
T ss_dssp HHHHHHHSSCSS--SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC----------
T ss_pred HHHHHHhCCCCC--CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHh-
Confidence 999999999664 45899999999999999999999999999999999999999999998765432 13346667665
Q ss_pred CCCCCCHHHHHHHHHHh
Q 010133 429 GKAEMTPADISEVLIKN 445 (517)
Q Consensus 429 ~~~~~spadi~~~l~~~ 445 (517)
+.|||+|||.++|...
T Consensus 679 -t~g~SGadi~~l~~~A 694 (806)
T 3cf2_A 679 -TNGFSGADLTEICQRA 694 (806)
T ss_dssp --------CHHHHHHHH
T ss_pred -CCCCCHHHHHHHHHHH
Confidence 7899999999999643
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.1e-33 Score=317.17 Aligned_cols=211 Identities=25% Similarity=0.330 Sum_probs=181.4
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecccc---
Q 010133 198 HPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVH--- 274 (517)
Q Consensus 198 ~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~--- 274 (517)
+..+|++|+|.++.|++|.+.+...++.++.|..+|+.+++|+|||||||||||+||+|+|++++.+++.++++++.
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~ 278 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSC
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhccc
Confidence 34689999999999999999888889999999999999999999999999999999999999999999999998873
Q ss_pred ---ChHHHHHHHHhcc--CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHH
Q 010133 275 ---NNSELRKLLMKTS--SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSG 349 (517)
Q Consensus 275 ---~~~~L~~lf~~~~--~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 349 (517)
++..++.+|..+. .||||||||||+++. ++. ...+...+..+++
T Consensus 279 ~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~---~r~----------------------------~~~~~~~~riv~~ 327 (806)
T 3cf2_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAP---KRE----------------------------KTHGEVERRIVSQ 327 (806)
T ss_dssp TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCC---TTT----------------------------TCCCTTHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCeEEEEehhccccc---ccC----------------------------CCCChHHHHHHHH
Confidence 3567999998774 799999999999852 111 1123446788999
Q ss_pred HHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhhC
Q 010133 350 LLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDVVG 429 (517)
Q Consensus 350 LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~~ 429 (517)
||..|||+.+. .+++||+|||+++.|||||+||||||.+|+++.|+.++|..|++.++...... .+..+..|+..
T Consensus 328 LL~~mdg~~~~--~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~-- 402 (806)
T 3cf2_A 328 LLTLMDGLKQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANE-- 402 (806)
T ss_dssp HHTHHHHCCGG--GCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHHH--
T ss_pred HHHHHhccccc--CCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHh--
Confidence 99999999765 35899999999999999999999999999999999999999999998654322 13456777776
Q ss_pred CCCCCHHHHHHHHHH
Q 010133 430 KAEMTPADISEVLIK 444 (517)
Q Consensus 430 ~~~~spadi~~~l~~ 444 (517)
+.||+++||..++..
T Consensus 403 T~GfsgaDL~~Lv~e 417 (806)
T 3cf2_A 403 THGHVGADLAALCSE 417 (806)
T ss_dssp CCSCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHH
Confidence 899999999998864
No 9
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.97 E-value=2.1e-29 Score=254.82 Aligned_cols=217 Identities=22% Similarity=0.343 Sum_probs=178.0
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecccc-
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVH- 274 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~- 274 (517)
..++.+|++|+|.++.|+.+.+.+...+..++.|...|++.++|+|||||||||||++|+++|++++.+++.++++++.
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 87 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999999988762
Q ss_pred -----ChHHHHHHHHhc--cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHH
Q 010133 275 -----NNSELRKLLMKT--SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITL 347 (517)
Q Consensus 275 -----~~~~L~~lf~~~--~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 347 (517)
....++.+|..+ ..||||||||||.+....+... ..........+
T Consensus 88 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~----------------------------~~~~~~~~~~~ 139 (301)
T 3cf0_A 88 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNI----------------------------GDGGGAADRVI 139 (301)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTT----------------------------CCSSCSCCHHH
T ss_pred hhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCc----------------------------CCcchHHHHHH
Confidence 345678888776 3689999999999853211110 00112345678
Q ss_pred HHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHh
Q 010133 348 SGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDV 427 (517)
Q Consensus 348 s~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l 427 (517)
+.||+.|||+... .+++||+|||.++.||++++|||||+..|+++.|+.++|..|++.++...... .+..+..++..
T Consensus 140 ~~lL~~l~~~~~~--~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~ 216 (301)
T 3cf0_A 140 NQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKM 216 (301)
T ss_dssp HHHHHHHHSSCTT--SSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHT
T ss_pred HHHHHHhhcccCC--CCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-ccchHHHHHHH
Confidence 8999999998543 45899999999999999999999999999999999999999999998765422 12345666664
Q ss_pred hCCCCCCHHHHHHHHHHh
Q 010133 428 VGKAEMTPADISEVLIKN 445 (517)
Q Consensus 428 ~~~~~~spadi~~~l~~~ 445 (517)
+.+++++||.+++...
T Consensus 217 --~~g~sg~dl~~l~~~a 232 (301)
T 3cf0_A 217 --TNGFSGADLTEICQRA 232 (301)
T ss_dssp --CSSCCHHHHHHHHHHH
T ss_pred --cCCCCHHHHHHHHHHH
Confidence 7899999999988644
No 10
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.97 E-value=1.5e-29 Score=252.76 Aligned_cols=215 Identities=23% Similarity=0.328 Sum_probs=168.1
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccC--
Q 010133 198 HPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHN-- 275 (517)
Q Consensus 198 ~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~-- 275 (517)
+..+|++|+|.++.|+.|.+.+..++..+..|..+|+..++|+||+||||||||+|+++||+.++.+++.++..++.+
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence 456899999999999999999999999999999999999999999999999999999999999999999998877632
Q ss_pred ----hHHHHHHHHhc--cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHH
Q 010133 276 ----NSELRKLLMKT--SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSG 349 (517)
Q Consensus 276 ----~~~L~~lf~~~--~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 349 (517)
...++.+|..+ ..|||+|+||||.++...+.. ........++.
T Consensus 85 ~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~-------------------------------~~~~~~~~~~~ 133 (274)
T 2x8a_A 85 VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR-------------------------------ETGASVRVVNQ 133 (274)
T ss_dssp THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC----------------------------------------CTTHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC-------------------------------cchHHHHHHHH
Confidence 34577888775 478999999999874211000 00112356789
Q ss_pred HHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCC-C-CChHhHHHHHHh
Q 010133 350 LLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEES-D-LEDETLKELEDV 427 (517)
Q Consensus 350 LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~-~-~~~~~~~~i~~l 427 (517)
++..|||...+ ...+++++||+|+.||||++||||||.+|++++|+.++|..|++.++..... . ..+..+..++..
T Consensus 134 ~l~~Lsgg~~~--~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~ 211 (274)
T 2x8a_A 134 LLTEMDGLEAR--QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGD 211 (274)
T ss_dssp HHHHHHTCCST--TCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTC
T ss_pred HHHhhhccccc--CCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHh
Confidence 99999998543 4578899999999999999999999999999999999999999998854211 1 123346677665
Q ss_pred hCCCCCCHHHHHHHHHHh
Q 010133 428 VGKAEMTPADISEVLIKN 445 (517)
Q Consensus 428 ~~~~~~spadi~~~l~~~ 445 (517)
..+.|||+|||..+|...
T Consensus 212 ~~~~g~sgadl~~l~~~a 229 (274)
T 2x8a_A 212 LRCDCYTGADLSALVREA 229 (274)
T ss_dssp SGGGSCCHHHHHHHHHHH
T ss_pred hccCCcCHHHHHHHHHHH
Confidence 445699999999988644
No 11
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.96 E-value=3.3e-28 Score=248.49 Aligned_cols=212 Identities=22% Similarity=0.263 Sum_probs=177.1
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh-CCceEEEeecccc-
Q 010133 197 KHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL-GYDIYDLELTEVH- 274 (517)
Q Consensus 197 ~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l-~~~i~~l~l~~~~- 274 (517)
.++.+|++|+|.++.|+.|.+.+...++.++.|.. +..+++|+|||||||||||+||+++|+++ +.+++.++++++.
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 35668999999999999999999999999988874 35567899999999999999999999999 8999999998763
Q ss_pred -----ChHHHHHHHHhc--cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHH
Q 010133 275 -----NNSELRKLLMKT--SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITL 347 (517)
Q Consensus 275 -----~~~~L~~lf~~~--~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 347 (517)
....++.+|..+ ..|+||||||||.+.. .+. ..........+
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~---~~~----------------------------~~~~~~~~~~~ 133 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCG---SRS----------------------------ENESEAARRIK 133 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGC---CSS----------------------------SCCTTHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcc---ccc----------------------------cccchHHHHHH
Confidence 356688888765 4789999999999852 111 01123456788
Q ss_pred HHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHh
Q 010133 348 SGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDV 427 (517)
Q Consensus 348 s~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l 427 (517)
+.||..+||+... ..+++||+|||.++.||++|+| ||+..|++++|+.++|..|++.++......+++..+..|++.
T Consensus 134 ~~ll~~ld~~~~~-~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~ 210 (322)
T 1xwi_A 134 TEFLVQMQGVGVD-NDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRK 210 (322)
T ss_dssp HHHHHHHHCSSSC-CTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHT
T ss_pred HHHHHHHhccccc-CCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 9999999998542 3568999999999999999999 999999999999999999999998766555567778888876
Q ss_pred hCCCCCCHHHHHHHHHHh
Q 010133 428 VGKAEMTPADISEVLIKN 445 (517)
Q Consensus 428 ~~~~~~spadi~~~l~~~ 445 (517)
+.|||++||..++...
T Consensus 211 --t~G~sgadl~~l~~~A 226 (322)
T 1xwi_A 211 --TDGYSGADISIIVRDA 226 (322)
T ss_dssp --CTTCCHHHHHHHHHHH
T ss_pred --cCCCCHHHHHHHHHHH
Confidence 7899999999988644
No 12
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.96 E-value=1.7e-28 Score=262.02 Aligned_cols=213 Identities=26% Similarity=0.356 Sum_probs=172.4
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecccc---
Q 010133 198 HPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVH--- 274 (517)
Q Consensus 198 ~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~--- 274 (517)
...+|++|+|.++.|+++.+. ..++..+..|.++|...++|+||+||||||||+|++++|++++.+++.++++++.
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~-v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEV-VEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHH-HHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCHHHhCCcHHHHHHHHHH-HHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 456899999999999998764 5678888999999999999999999999999999999999999999999998863
Q ss_pred ---ChHHHHHHHHhc--cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHH
Q 010133 275 ---NNSELRKLLMKT--SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSG 349 (517)
Q Consensus 275 ---~~~~L~~lf~~~--~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 349 (517)
....++.+|..+ ..||||||||||.+.. .+. . ...+.+.....+++.
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~---~r~------------------------~-~~~g~~~~~~~~l~~ 141 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGR---HRG------------------------A-GLGGGHDEREQTLNQ 141 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCC---C----------------------------------CHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhh---hcc------------------------c-ccCcCcHHHHHHHHH
Confidence 235678888776 4799999999999741 110 0 001223445678999
Q ss_pred HHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhhC
Q 010133 350 LLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDVVG 429 (517)
Q Consensus 350 LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~~ 429 (517)
||+.|||+.+. .+++||+|||.++.|||+++||||||..|.++.|+.++|..|++.++...... ++..+..++..
T Consensus 142 LL~~ld~~~~~--~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~-~~v~l~~la~~-- 216 (476)
T 2ce7_A 142 LLVEMDGFDSK--EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLA-EDVNLEIIAKR-- 216 (476)
T ss_dssp HHHHHHHSCGG--GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHT--
T ss_pred HHHHHhccCCC--CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCc-chhhHHHHHHh--
Confidence 99999998654 45899999999999999999999999999999999999999999988754322 12235666665
Q ss_pred CCCCCHHHHHHHHHH
Q 010133 430 KAEMTPADISEVLIK 444 (517)
Q Consensus 430 ~~~~spadi~~~l~~ 444 (517)
+.|++++||.+++..
T Consensus 217 t~G~sgadL~~lv~~ 231 (476)
T 2ce7_A 217 TPGFVGADLENLVNE 231 (476)
T ss_dssp CTTCCHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHH
Confidence 789999999988873
No 13
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.96 E-value=7.2e-28 Score=245.69 Aligned_cols=215 Identities=22% Similarity=0.280 Sum_probs=177.7
Q ss_pred cccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccc
Q 010133 194 VSFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEV 273 (517)
Q Consensus 194 ~~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~ 273 (517)
+...++.+|++|+|.++.|+.|.+.+...+..+..|... ...++|+|||||||||||++|+++|++++.+++.++++.+
T Consensus 9 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~-~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l 87 (322)
T 3eie_A 9 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGN-RKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 87 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTT-CCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred eecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcC-CCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHH
Confidence 345677799999999999999999999999998888774 4556799999999999999999999999999999999876
Q ss_pred c------ChHHHHHHHHhc--cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhh
Q 010133 274 H------NNSELRKLLMKT--SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSI 345 (517)
Q Consensus 274 ~------~~~~L~~lf~~~--~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (517)
. ....++.+|..+ ..|+||||||||.+.. .+. .+.......
T Consensus 88 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~---~~~----------------------------~~~~~~~~~ 136 (322)
T 3eie_A 88 VSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTG---TRG----------------------------EGESEASRR 136 (322)
T ss_dssp HTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSC---C----------------------------------CCTHH
T ss_pred hhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhc---cCC----------------------------CCcchHHHH
Confidence 3 234577777665 4789999999999842 110 011234567
Q ss_pred HHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHH
Q 010133 346 TLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELE 425 (517)
Q Consensus 346 ~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~ 425 (517)
.+..||..+||+... ..+++||+|||.++.||++|+| ||+..|++++|+.++|..|++.++......+++..+..|+
T Consensus 137 ~~~~ll~~l~~~~~~-~~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la 213 (322)
T 3eie_A 137 IKTELLVQMNGVGND-SQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLG 213 (322)
T ss_dssp HHHHHHHHHGGGGTS-CCCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHH
T ss_pred HHHHHHHHhcccccc-CCceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHH
Confidence 889999999998543 3568999999999999999999 9999999999999999999999998766566677888888
Q ss_pred HhhCCCCCCHHHHHHHHHHh
Q 010133 426 DVVGKAEMTPADISEVLIKN 445 (517)
Q Consensus 426 ~l~~~~~~spadi~~~l~~~ 445 (517)
.. +.||+++||..++...
T Consensus 214 ~~--t~g~sg~di~~l~~~a 231 (322)
T 3eie_A 214 AM--TEGYSGSDIAVVVKDA 231 (322)
T ss_dssp HT--TTTCCHHHHHHHHHHH
T ss_pred HH--cCCCCHHHHHHHHHHH
Confidence 76 6899999999888644
No 14
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=9.1e-28 Score=239.64 Aligned_cols=217 Identities=25% Similarity=0.308 Sum_probs=176.9
Q ss_pred ccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecccc
Q 010133 195 SFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVH 274 (517)
Q Consensus 195 ~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~ 274 (517)
...++.+|++++|.++.++.|.+.+..++..++.|...|...++++|||||||||||++|+++|+.++.+++.++++.+.
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 88 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELV 88 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHH
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999998873
Q ss_pred C------hHHHHHHHHhc--cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhH
Q 010133 275 N------NSELRKLLMKT--SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSIT 346 (517)
Q Consensus 275 ~------~~~L~~lf~~~--~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (517)
. ...+..+|..+ ..|+||||||||.++. ++.. ...+........
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~---~~~~-------------------------~~~~~~~~~~~~ 140 (285)
T 3h4m_A 89 KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAA---KRTD-------------------------ALTGGDREVQRT 140 (285)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHB---CCSS-------------------------SCCGGGGHHHHH
T ss_pred HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcc---cCcc-------------------------ccCCccHHHHHH
Confidence 2 34466666654 4789999999999852 1110 000112345678
Q ss_pred HHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHH
Q 010133 347 LSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELED 426 (517)
Q Consensus 347 ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~ 426 (517)
+..+++.++++... .+.+||+|||.++.||++++|||||+..+.+++|+.+++..|++.++...... ....+..++.
T Consensus 141 l~~ll~~~~~~~~~--~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~ 217 (285)
T 3h4m_A 141 LMQLLAEMDGFDAR--GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVNLEEIAK 217 (285)
T ss_dssp HHHHHHHHHTTCSS--SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHH
T ss_pred HHHHHHHhhCCCCC--CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCCHHHHHH
Confidence 88999999987543 45899999999999999999999999999999999999999999988654422 1334666766
Q ss_pred hhCCCCCCHHHHHHHHHH
Q 010133 427 VVGKAEMTPADISEVLIK 444 (517)
Q Consensus 427 l~~~~~~spadi~~~l~~ 444 (517)
. +.++++++|..++..
T Consensus 218 ~--~~g~~~~~i~~l~~~ 233 (285)
T 3h4m_A 218 M--TEGCVGAELKAICTE 233 (285)
T ss_dssp H--CTTCCHHHHHHHHHH
T ss_pred H--cCCCCHHHHHHHHHH
Confidence 6 689999999998774
No 15
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.96 E-value=3.6e-28 Score=239.02 Aligned_cols=214 Identities=24% Similarity=0.333 Sum_probs=158.8
Q ss_pred CCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccC---
Q 010133 199 PSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHN--- 275 (517)
Q Consensus 199 p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~--- 275 (517)
+.+|++++|.++.|+.+.+. ..++..+..|...|.+.++++|||||||||||++|+++|++++.+++.++++.+..
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~-~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREF-VDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHH-HHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCHHHhCCHHHHHHHHHHH-HHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 46899999999999998664 45688889999999999999999999999999999999999999999999987632
Q ss_pred ---hHHHHHHHHhcc--CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHH
Q 010133 276 ---NSELRKLLMKTS--SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGL 350 (517)
Q Consensus 276 ---~~~L~~lf~~~~--~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 350 (517)
...++.+|..+. .++||||||||.+....+.. .....+......+..|
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~---------------------------~~~~~~~~~~~~l~~l 133 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTT---------------------------MSGFSNTEEEQTLNQL 133 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC----------------------------------------------CHHHHHH
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhcccccc---------------------------ccCccchhHHHHHHHH
Confidence 345677776653 68999999999974211000 0000123345678999
Q ss_pred HHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHh-HHHHHHhhC
Q 010133 351 LNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDET-LKELEDVVG 429 (517)
Q Consensus 351 Ln~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~-~~~i~~l~~ 429 (517)
|+.+++.... ..+++|+|||.++.||++++|||||+..+++++|+.++|..|++.++........... ...++..
T Consensus 134 l~~~~~~~~~--~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~-- 209 (262)
T 2qz4_A 134 LVEMDGMGTT--DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAEL-- 209 (262)
T ss_dssp HHHHHTCCTT--CCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHT--
T ss_pred HHHhhCcCCC--CCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHH--
Confidence 9999987543 4689999999999999999999999999999999999999999998865544333332 3556555
Q ss_pred CCCCCHHHHHHHHHH
Q 010133 430 KAEMTPADISEVLIK 444 (517)
Q Consensus 430 ~~~~spadi~~~l~~ 444 (517)
+.++++++|..++..
T Consensus 210 ~~g~~~~~l~~l~~~ 224 (262)
T 2qz4_A 210 TPGFSGADIANICNE 224 (262)
T ss_dssp CTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 679999999988874
No 16
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.96 E-value=2.2e-27 Score=233.83 Aligned_cols=215 Identities=25% Similarity=0.336 Sum_probs=166.7
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecccc-
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVH- 274 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~- 274 (517)
..++.+|++|+|.++.|+.+.+. ..++..+..|...|...++|+|||||||||||++++++|+.++.+++.++++.+.
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAEL-VEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHH-HHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred cCCCCCHHHhcCcHHHHHHHHHH-HHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 35677999999999999999764 4668888889999999999999999999999999999999999999999988763
Q ss_pred -----ChHHHHHHHHhcc--CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHH
Q 010133 275 -----NNSELRKLLMKTS--SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITL 347 (517)
Q Consensus 275 -----~~~~L~~lf~~~~--~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 347 (517)
....++.+|..+. .|+||||||||.+.. .+.. ...+........+
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~---~~~~-------------------------~~~~~~~~~~~~~ 135 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGR---QRGA-------------------------GLGGGHDEREQTL 135 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTC---CCST-------------------------TSCCTTCHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhcc---CCCC-------------------------CcCCCchHHHHHH
Confidence 3456788887753 679999999999742 1100 0011123345788
Q ss_pred HHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHh
Q 010133 348 SGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDV 427 (517)
Q Consensus 348 s~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l 427 (517)
..+|..+|++... ..+++|+|||.++.+|++++|||||+..|++++|+.++|..|++.++...... .+..+..++..
T Consensus 136 ~~ll~~l~~~~~~--~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~-~~~~~~~la~~ 212 (257)
T 1lv7_A 136 NQMLVEMDGFEGN--EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARG 212 (257)
T ss_dssp HHHHHHHHTCCSS--SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHT
T ss_pred HHHHHHhhCcccC--CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCC-ccccHHHHHHH
Confidence 9999999998543 45899999999999999999999999999999999999999999988654321 12234555554
Q ss_pred hCCCCCCHHHHHHHHHH
Q 010133 428 VGKAEMTPADISEVLIK 444 (517)
Q Consensus 428 ~~~~~~spadi~~~l~~ 444 (517)
+.||+++||..++..
T Consensus 213 --~~G~~~~dl~~l~~~ 227 (257)
T 1lv7_A 213 --TPGFSGADLANLVNE 227 (257)
T ss_dssp --CTTCCHHHHHHHHHH
T ss_pred --cCCCCHHHHHHHHHH
Confidence 689999999988764
No 17
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.95 E-value=3.4e-27 Score=244.12 Aligned_cols=212 Identities=22% Similarity=0.286 Sum_probs=173.9
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecccc--
Q 010133 197 KHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVH-- 274 (517)
Q Consensus 197 ~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~-- 274 (517)
.++.+|++|+|.++.++.|.+.+...+..+..|.. +...++|+|||||||||||+||+++|++++.+++.++++.+.
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~ 123 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 123 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSC
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhh
Confidence 45678999999999999999999989999988887 566678999999999999999999999999999999998762
Q ss_pred ----ChHHHHHHHHhc--cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHH
Q 010133 275 ----NNSELRKLLMKT--SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLS 348 (517)
Q Consensus 275 ----~~~~L~~lf~~~--~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 348 (517)
....++.+|..+ ..|+||||||||.+.. .+. .+........++
T Consensus 124 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~---~r~----------------------------~~~~~~~~~~~~ 172 (355)
T 2qp9_X 124 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTG---TRG----------------------------EGESEASRRIKT 172 (355)
T ss_dssp C---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC-------------------------------------CTHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcc---cCC----------------------------CCcchHHHHHHH
Confidence 345677788765 3789999999999742 110 011234567789
Q ss_pred HHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhh
Q 010133 349 GLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDVV 428 (517)
Q Consensus 349 ~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~ 428 (517)
.||..|||+... ...++||+|||.++.||++|+| ||+..|++++|+.++|..|++.++......++...+..|+..
T Consensus 173 ~ll~~l~~~~~~-~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~- 248 (355)
T 2qp9_X 173 ELLVQMNGVGND-SQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAM- 248 (355)
T ss_dssp HHHHHHHHCC----CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHH-
T ss_pred HHHHHhhccccc-CCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-
Confidence 999999988542 3458999999999999999999 999999999999999999999998776555567778888887
Q ss_pred CCCCCCHHHHHHHHHHh
Q 010133 429 GKAEMTPADISEVLIKN 445 (517)
Q Consensus 429 ~~~~~spadi~~~l~~~ 445 (517)
+.||+++||..+|...
T Consensus 249 -t~G~sg~dl~~l~~~A 264 (355)
T 2qp9_X 249 -TEGYSGSDIAVVVKDA 264 (355)
T ss_dssp -TTTCCHHHHHHHHHHH
T ss_pred -cCCCCHHHHHHHHHHH
Confidence 6899999999988643
No 18
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.95 E-value=2.4e-27 Score=254.65 Aligned_cols=248 Identities=22% Similarity=0.286 Sum_probs=188.2
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccC--
Q 010133 198 HPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHN-- 275 (517)
Q Consensus 198 ~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~-- 275 (517)
.+.+|++++|.++.++.|.+.+...+..++.|..+|.+.++|+|||||||||||++|+++|++++.+++.++|+.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 456899999999999999999999999999999999999999999999999999999999999999999999988732
Q ss_pred ----hHHHHHHHHhc--cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHH
Q 010133 276 ----NSELRKLLMKT--SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSG 349 (517)
Q Consensus 276 ----~~~L~~lf~~~--~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 349 (517)
...++.+|..+ ..|+||||||||.+.. ++. ..........++.
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~---~~~----------------------------~~~~~~~~~~~~~ 327 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAP---KRE----------------------------KTHGEVERRIVSQ 327 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCB---CTT----------------------------SCCCHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhcc---ccc----------------------------cccchHHHHHHHH
Confidence 34577788766 3689999999999852 111 0112345678899
Q ss_pred HHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhhC
Q 010133 350 LLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDVVG 429 (517)
Q Consensus 350 LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~~ 429 (517)
||..||+.... ..++||+|||.++.||++|+|||||+..|+++.|+.++|..+++.++....... +..+..++..
T Consensus 328 LL~~ld~~~~~--~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~-~~~l~~la~~-- 402 (489)
T 3hu3_A 328 LLTLMDGLKQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD-DVDLEQVANE-- 402 (489)
T ss_dssp HHHHHHHSCTT--SCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCT-TCCHHHHHHT--
T ss_pred HHHHhhccccC--CceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcc-hhhHHHHHHH--
Confidence 99999987543 458999999999999999999999999999999999999999999886544222 2345666665
Q ss_pred CCCCCHHHHHHHHHHhcccH-----------------------HHHHHHHHHHHHHHHHhhhhcCCccccCCChh
Q 010133 430 KAEMTPADISEVLIKNKRDK-----------------------CKAVRELLETLKVKAEKNVKHGGIIVKNSDYE 481 (517)
Q Consensus 430 ~~~~spadi~~~l~~~~~~~-----------------------~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 481 (517)
+.+++++||..++......+ ....+++..+++.......+......++..|+
T Consensus 403 t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~ 477 (489)
T 3hu3_A 403 THGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWE 477 (489)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC--------
T ss_pred ccCCcHHHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHH
Confidence 78999999998876321000 01234555555555555444444455666665
No 19
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.95 E-value=1.9e-26 Score=245.46 Aligned_cols=213 Identities=22% Similarity=0.254 Sum_probs=173.2
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh-CCceEEEeecccc
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL-GYDIYDLELTEVH 274 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l-~~~i~~l~l~~~~ 274 (517)
..++.+|++|+|.++.++.|.+.+...+..+..|.. +...++|+|||||||||||+||+++|+++ +.+++.++++++.
T Consensus 127 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~ 205 (444)
T 2zan_A 127 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 205 (444)
T ss_dssp CCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence 356678999999999999999999888888888875 34556899999999999999999999999 8999999998763
Q ss_pred ------ChHHHHHHHHhc--cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhH
Q 010133 275 ------NNSELRKLLMKT--SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSIT 346 (517)
Q Consensus 275 ------~~~~L~~lf~~~--~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (517)
....++.+|..+ ..|+||||||||.++. .+. ..........
T Consensus 206 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~---~~~----------------------------~~~~~~~~~~ 254 (444)
T 2zan_A 206 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCG---SRS----------------------------ENESEAARRI 254 (444)
T ss_dssp ------CCCTHHHHHHHHHHSCSEEEEESCTTTTCC---CSS----------------------------CCCCGGGHHH
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcc---CCC----------------------------CccccHHHHH
Confidence 234467777655 4789999999999742 111 0112345678
Q ss_pred HHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHH
Q 010133 347 LSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELED 426 (517)
Q Consensus 347 ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~ 426 (517)
++.||..|||+... ..+++||+|||.++.|||+|+| ||+..|++++|+.++|..|++.++......+++..+..|+.
T Consensus 255 ~~~lL~~l~~~~~~-~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~ 331 (444)
T 2zan_A 255 KTEFLVQMQGVGVD-NDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGR 331 (444)
T ss_dssp HHHHHTTTTCSSCC-CSSCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHH
T ss_pred HHHHHHHHhCcccC-CCCEEEEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 89999999998532 3568999999999999999999 99999999999999999999999876654455777888887
Q ss_pred hhCCCCCCHHHHHHHHHHh
Q 010133 427 VVGKAEMTPADISEVLIKN 445 (517)
Q Consensus 427 l~~~~~~spadi~~~l~~~ 445 (517)
. +.|||++||..++...
T Consensus 332 ~--t~G~sgadl~~l~~~a 348 (444)
T 2zan_A 332 K--TDGYSGADISIIVRDA 348 (444)
T ss_dssp H--TTTCCHHHHHHHHHHH
T ss_pred H--cCCCCHHHHHHHHHHH
Confidence 7 6899999999988643
No 20
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.94 E-value=5.1e-26 Score=244.19 Aligned_cols=233 Identities=26% Similarity=0.336 Sum_probs=179.2
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccC--
Q 010133 198 HPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHN-- 275 (517)
Q Consensus 198 ~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~-- 275 (517)
++.+|++|+|.++.|+++.+ +..++..+..|..+|...++|+||+||||||||+|+++||++++.+++.++++++..
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~-lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHH-HHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHH-HHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 66789999999999999866 556778888999999999999999999999999999999999999999999987632
Q ss_pred ----hHHHHHHHHhcc--CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHH
Q 010133 276 ----NSELRKLLMKTS--SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSG 349 (517)
Q Consensus 276 ----~~~L~~lf~~~~--~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 349 (517)
...++.+|..+. .|||+||||||.+.. .+. . ...+.......+++.
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~---~r~------------------------~-~~~~~~~e~~~~l~~ 156 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGR---KRG------------------------S-GVGGGNDEREQTLNQ 156 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCC---CSS------------------------S-STTTSSHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHH---hhc------------------------c-CcCCCcHHHHHHHHH
Confidence 345778887764 689999999998731 110 0 000112334578899
Q ss_pred HHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhhC
Q 010133 350 LLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDVVG 429 (517)
Q Consensus 350 LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~~ 429 (517)
||..|||...+ ...++|++||.++.|||+|+||||||.+|.+++|+.++|..|++.++...... ++..+..++..
T Consensus 157 LL~~Ldg~~~~--~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~-~dv~l~~lA~~-- 231 (499)
T 2dhr_A 157 LLVEMDGFEKD--TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDVDLALLAKR-- 231 (499)
T ss_dssp HHHHGGGCCSS--CCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCC-CSSTTHHHHTT--
T ss_pred HHHHhcccccC--ccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCC-hHHHHHHHHHh--
Confidence 99999998543 45799999999999999999999999999999999999999999887543221 12335556654
Q ss_pred CCCCCHHHHHHHHHHhc-----c-cHHHHHHHHHHHHHHHH
Q 010133 430 KAEMTPADISEVLIKNK-----R-DKCKAVRELLETLKVKA 464 (517)
Q Consensus 430 ~~~~spadi~~~l~~~~-----~-~~~~al~~l~~~l~~~~ 464 (517)
+.|++++||.+++.... . ......+++.++++...
T Consensus 232 t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~ 272 (499)
T 2dhr_A 232 TPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADRVM 272 (499)
T ss_dssp SCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHh
Confidence 68999999999887321 1 11233455555665543
No 21
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.94 E-value=2.1e-25 Score=230.72 Aligned_cols=213 Identities=20% Similarity=0.294 Sum_probs=172.3
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccC-
Q 010133 197 KHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHN- 275 (517)
Q Consensus 197 ~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~- 275 (517)
.++.+|++++|.++.++.|.+.+...+..+..|...+ ..++++|||||||||||++|+++|++++.+++.++++.+..
T Consensus 78 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 78 GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK 156 (357)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc
Confidence 3577899999999999999999998888888887765 45679999999999999999999999999999999998743
Q ss_pred -----hHHHHHHHHhc--cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHH
Q 010133 276 -----NSELRKLLMKT--SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLS 348 (517)
Q Consensus 276 -----~~~L~~lf~~~--~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 348 (517)
...++.+|..+ ..++||||||||.+.. .+. .+........++
T Consensus 157 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~---~~~----------------------------~~~~~~~~~~~~ 205 (357)
T 3d8b_A 157 WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLS---QRG----------------------------DGEHESSRRIKT 205 (357)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTB---C----------------------------------CHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhc---cCC----------------------------CCcchHHHHHHH
Confidence 34466677654 4789999999999852 110 011334567889
Q ss_pred HHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhh
Q 010133 349 GLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDVV 428 (517)
Q Consensus 349 ~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~ 428 (517)
.||..++|........++||+|||.++.||++++| ||+..++++.|+.+++..+++.++......+++..+..++..
T Consensus 206 ~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~- 282 (357)
T 3d8b_A 206 EFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQ- 282 (357)
T ss_dssp HHHHHHHC----CCCCEEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHH-
T ss_pred HHHHHHhcccccCCCCEEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHH-
Confidence 99999999865445668899999999999999999 999999999999999999999988665555667778888776
Q ss_pred CCCCCCHHHHHHHHHHh
Q 010133 429 GKAEMTPADISEVLIKN 445 (517)
Q Consensus 429 ~~~~~spadi~~~l~~~ 445 (517)
+.|+++++|..++...
T Consensus 283 -t~G~s~~dl~~l~~~a 298 (357)
T 3d8b_A 283 -SDAFSGADMTQLCREA 298 (357)
T ss_dssp -TTTCCHHHHHHHHHHH
T ss_pred -cCCCCHHHHHHHHHHH
Confidence 6899999999988644
No 22
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.94 E-value=1.6e-25 Score=234.20 Aligned_cols=216 Identities=24% Similarity=0.325 Sum_probs=175.4
Q ss_pred cccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccc
Q 010133 194 VSFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEV 273 (517)
Q Consensus 194 ~~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~ 273 (517)
+...+|.+|++++|.+..++.|.+.+...+..+..|...+.+ ++++|||||||||||++|+++|++++.+++.++|+.+
T Consensus 106 ~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l 184 (389)
T 3vfd_A 106 VDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAP-ARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASL 184 (389)
T ss_dssp BCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCC-CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC
T ss_pred hccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCC-CceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHh
Confidence 345678899999999999999999999999888888888754 6799999999999999999999999999999999887
Q ss_pred c------ChHHHHHHHHhc--cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhh
Q 010133 274 H------NNSELRKLLMKT--SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSI 345 (517)
Q Consensus 274 ~------~~~~L~~lf~~~--~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (517)
. ....++.+|..+ ..++||||||||.++. .+. .+.......
T Consensus 185 ~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~---~~~----------------------------~~~~~~~~~ 233 (389)
T 3vfd_A 185 TSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLC---ERR----------------------------EGEHDASRR 233 (389)
T ss_dssp -------CHHHHHHHHHHHHHSSSEEEEEETGGGGC---------------------------------------CTHHH
T ss_pred hccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcc---cCC----------------------------CccchHHHH
Confidence 3 234567777654 4789999999999852 110 011234567
Q ss_pred HHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHH
Q 010133 346 TLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELE 425 (517)
Q Consensus 346 ~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~ 425 (517)
.+..||..++|+.......++||+|||.++.||++++| ||+..|+++.|+.+++..+++.++......+....+..++
T Consensus 234 ~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la 311 (389)
T 3vfd_A 234 LKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLA 311 (389)
T ss_dssp HHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHH
T ss_pred HHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 88899999999866545668999999999999999999 9999999999999999999999988776667777888887
Q ss_pred HhhCCCCCCHHHHHHHHHHh
Q 010133 426 DVVGKAEMTPADISEVLIKN 445 (517)
Q Consensus 426 ~l~~~~~~spadi~~~l~~~ 445 (517)
.. +.++++++|..++...
T Consensus 312 ~~--~~g~~~~~l~~L~~~a 329 (389)
T 3vfd_A 312 RM--TDGYSGSDLTALAKDA 329 (389)
T ss_dssp HH--TTTCCHHHHHHHHHHH
T ss_pred HH--cCCCCHHHHHHHHHHH
Confidence 76 6899999998877643
No 23
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.93 E-value=5.7e-27 Score=231.94 Aligned_cols=216 Identities=28% Similarity=0.379 Sum_probs=162.9
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccC-
Q 010133 197 KHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHN- 275 (517)
Q Consensus 197 ~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~- 275 (517)
.++.+|++++|.++.++.+.+. ..++..++.|...|...++|+|||||||||||++|+++|++++.+++.++++.+..
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEI-VDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHH-HHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred CCCCCHHHhCCcHHHHHHHHHH-HHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 3456899999999999999774 45688889999999999999999999999999999999999999999999887631
Q ss_pred -----hHHHHHHHHhc--cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHH
Q 010133 276 -----NSELRKLLMKT--SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLS 348 (517)
Q Consensus 276 -----~~~L~~lf~~~--~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 348 (517)
...++.+|..+ ..|+||||||||.+........ ....+......++
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~---------------------------~~~~~~~~~~~~~ 136 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGG---------------------------VVSGNDEREQTLN 136 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC-------------------------------------CCCSCSSTT
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccc---------------------------cCCCchhHHHHHH
Confidence 22344555544 3689999999999842100000 0001122334567
Q ss_pred HHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhh
Q 010133 349 GLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDVV 428 (517)
Q Consensus 349 ~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~ 428 (517)
.||+.+|+..+. ...++||+|||.++.||++++|||||+..|++++|+.++|..+++.++...... ....+..++..
T Consensus 137 ~ll~~l~~~~~~-~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~- 213 (268)
T 2r62_A 137 QLLAEMDGFGSE-NAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKL- 213 (268)
T ss_dssp TTTTTTTCSSCS-CSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSS-
T ss_pred HHHHHhhCcccC-CCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHH-
Confidence 888999987542 345899999999999999999999999999999999999999999988654321 12223344443
Q ss_pred CCCCCCHHHHHHHHHH
Q 010133 429 GKAEMTPADISEVLIK 444 (517)
Q Consensus 429 ~~~~~spadi~~~l~~ 444 (517)
+.+++++||.+++..
T Consensus 214 -~~g~~g~dl~~l~~~ 228 (268)
T 2r62_A 214 -TAGLAGADLANIINE 228 (268)
T ss_dssp -SCSSCHHHHHHHHHH
T ss_pred -cCCCCHHHHHHHHHH
Confidence 578999999887753
No 24
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.93 E-value=3.8e-25 Score=222.07 Aligned_cols=214 Identities=21% Similarity=0.283 Sum_probs=169.8
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccC
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHN 275 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~ 275 (517)
..++.+|++++|.++.++.+.+.+...+..++.|...+. .++++|||||||||||++|+++|++++.+++.++++.+..
T Consensus 14 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~-~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 92 (297)
T 3b9p_A 14 GGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRA-PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTS 92 (297)
T ss_dssp CSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGC-CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSS
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCC-CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhh
Confidence 346778999999999999999988888888888877764 4679999999999999999999999999999999987632
Q ss_pred ------hHHHHHHHHhc--cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHH
Q 010133 276 ------NSELRKLLMKT--SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITL 347 (517)
Q Consensus 276 ------~~~L~~lf~~~--~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 347 (517)
...++.+|..+ ..|+||||||||.++..... .........+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~-------------------------------~~~~~~~~~~ 141 (297)
T 3b9p_A 93 KYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSS-------------------------------SEHEASRRLK 141 (297)
T ss_dssp SSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC------------------------------------CCSHHHH
T ss_pred cccchHHHHHHHHHHHHHHcCCcEEEeccHHHhcccccc-------------------------------CcchHHHHHH
Confidence 34456666554 47899999999998521110 0122345677
Q ss_pred HHHHHhhcCCccc-CCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHH
Q 010133 348 SGLLNFTDGLWSC-CGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELED 426 (517)
Q Consensus 348 s~LLn~lDg~~s~-~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~ 426 (517)
+.||..+|+.... .+..++||+|||.++.||++++| ||+..+++++|+.+++..+++.++......++...+..++.
T Consensus 142 ~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~ 219 (297)
T 3b9p_A 142 TEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAK 219 (297)
T ss_dssp HHHHHHHHHCC------CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHH
T ss_pred HHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 8899999987543 23458899999999999999999 99999999999999999999998876555566777888877
Q ss_pred hhCCCCCCHHHHHHHHHHh
Q 010133 427 VVGKAEMTPADISEVLIKN 445 (517)
Q Consensus 427 l~~~~~~spadi~~~l~~~ 445 (517)
. +.|+++++|..++...
T Consensus 220 ~--~~g~~~~~l~~l~~~a 236 (297)
T 3b9p_A 220 I--TDGYSGSDLTALAKDA 236 (297)
T ss_dssp H--TTTCCHHHHHHHHHHH
T ss_pred H--cCCCCHHHHHHHHHHH
Confidence 6 6899999999887643
No 25
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.93 E-value=7.2e-25 Score=215.39 Aligned_cols=214 Identities=27% Similarity=0.346 Sum_probs=165.5
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecccc--
Q 010133 197 KHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVH-- 274 (517)
Q Consensus 197 ~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~-- 274 (517)
.++.+|++++|.++.+.++.+ +..++..+..+...+...++|++|+||||||||+|+++||+.++.+++.++...+.
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~ 88 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 88 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCHHHhCCcHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHH
Confidence 455689999999999998866 55556777889999999999999999999999999999999999999999876552
Q ss_pred ----ChHHHHHHHHhcc--CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHH
Q 010133 275 ----NNSELRKLLMKTS--SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLS 348 (517)
Q Consensus 275 ----~~~~L~~lf~~~~--~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 348 (517)
....+..+|.... .|++++|||||.+....+.. ...........++
T Consensus 89 ~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~----------------------------~~~~~~~~~~~~~ 140 (254)
T 1ixz_A 89 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG----------------------------VGGGNDEREQTLN 140 (254)
T ss_dssp CTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC-------------------------------------CHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCcc----------------------------ccccchHHHHHHH
Confidence 1244677787754 68999999999874211100 0001223456788
Q ss_pred HHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhh
Q 010133 349 GLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDVV 428 (517)
Q Consensus 349 ~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~ 428 (517)
.+++.++|...+ ...+++++||.|+.|||+++|||||+.+|++++|+.++|..|++.++...... ++..+..++..
T Consensus 141 ~ll~~l~g~~~~--~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~- 216 (254)
T 1ixz_A 141 QLLVEMDGFEKD--TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDVDLALLAKR- 216 (254)
T ss_dssp HHHHHHHTCCTT--CCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHT-
T ss_pred HHHHHHhCCCCC--CCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCC-cccCHHHHHHH-
Confidence 999999987543 34788899999999999999999999999999999999999999887543211 12335666665
Q ss_pred CCCCCCHHHHHHHHHH
Q 010133 429 GKAEMTPADISEVLIK 444 (517)
Q Consensus 429 ~~~~~spadi~~~l~~ 444 (517)
+.|++++||.+++..
T Consensus 217 -~~G~~~~dl~~~~~~ 231 (254)
T 1ixz_A 217 -TPGFVGADLENLLNE 231 (254)
T ss_dssp -CTTCCHHHHHHHHHH
T ss_pred -cCCCCHHHHHHHHHH
Confidence 689999999988863
No 26
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.92 E-value=8e-24 Score=211.04 Aligned_cols=216 Identities=26% Similarity=0.336 Sum_probs=166.0
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecccc-
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVH- 274 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~- 274 (517)
..++.+|+++++.++.++++.+ +..++..+..+...+...++|++|+||||||||+|+++||+.++.+++.+++..+.
T Consensus 33 ~~~~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 33 EAPKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 111 (278)
T ss_dssp CCCCCCGGGSSSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCCHHHhCChHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH
Confidence 3467789999999999998865 55566777889999999999999999999999999999999999999999876652
Q ss_pred -----ChHHHHHHHHhc--cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHH
Q 010133 275 -----NNSELRKLLMKT--SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITL 347 (517)
Q Consensus 275 -----~~~~L~~lf~~~--~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 347 (517)
....+..+|... ..|++++|||||.+....... ...........+
T Consensus 112 ~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~----------------------------~~~~~~~~~~~~ 163 (278)
T 1iy2_A 112 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG----------------------------VGGGNDEREQTL 163 (278)
T ss_dssp STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC------------------------------------CHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccc----------------------------cCCcchHHHHHH
Confidence 123466777765 368999999999874211000 000122345678
Q ss_pred HHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHh
Q 010133 348 SGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDV 427 (517)
Q Consensus 348 s~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l 427 (517)
..+++.++|...+ ...+++++||.|+.|||+++|||||+.+|++++|+.++|..|++.++...... ++..+..++..
T Consensus 164 ~~ll~~lsgg~~~--~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~ 240 (278)
T 1iy2_A 164 NQLLVEMDGFEKD--TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDVDLALLAKR 240 (278)
T ss_dssp HHHHHHHTTCCTT--CCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHT
T ss_pred HHHHHHHhCCCCC--CCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCC-cccCHHHHHHH
Confidence 8999999987432 34788899999999999999999999999999999999999999887543211 12235566654
Q ss_pred hCCCCCCHHHHHHHHHHh
Q 010133 428 VGKAEMTPADISEVLIKN 445 (517)
Q Consensus 428 ~~~~~~spadi~~~l~~~ 445 (517)
+.|++++||..++...
T Consensus 241 --~~G~~~~dl~~l~~~a 256 (278)
T 1iy2_A 241 --TPGFVGADLENLLNEA 256 (278)
T ss_dssp --CTTCCHHHHHHHHHHH
T ss_pred --cCCCCHHHHHHHHHHH
Confidence 6899999999887633
No 27
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.92 E-value=2.7e-25 Score=223.88 Aligned_cols=171 Identities=15% Similarity=0.181 Sum_probs=122.9
Q ss_pred hhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccC------hHHHHHHHHhc------cCCcEEEEccch
Q 010133 231 KTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHN------NSELRKLLMKT------SSKSIIVIEDID 298 (517)
Q Consensus 231 ~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~------~~~L~~lf~~~------~~~sII~iDdID 298 (517)
..|.++++|+|||||||||||+||++||++++.+++.++++.+.+ ...++.+|..+ ..||||||||||
T Consensus 30 ~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD 109 (293)
T 3t15_A 30 LPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLD 109 (293)
T ss_dssp CTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechh
Confidence 457788899999999999999999999999999999999988742 34577778665 278999999999
Q ss_pred hhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcc---------cCCCceEEEE
Q 010133 299 CSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWS---------CCGSEKIFVF 369 (517)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s---------~~~~~~iiI~ 369 (517)
.++. ++. .........+...+.||+.||+... ....+++||+
T Consensus 110 ~~~~---~~~--------------------------~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ 160 (293)
T 3t15_A 110 AGAG---RMG--------------------------GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIV 160 (293)
T ss_dssp -------------------------------------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEE
T ss_pred hhcC---CCC--------------------------CCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEE
Confidence 9752 110 0000122355677899999986531 1234589999
Q ss_pred EeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhhCCCCCCHHHHH
Q 010133 370 TTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDVVGKAEMTPADIS 439 (517)
Q Consensus 370 TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~~~~~~spadi~ 439 (517)
|||+++.||+||+||||||..|+ .|+.++|..|++.++.... .+ ...++.+ +.+|++++|.
T Consensus 161 ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r~~Il~~~~~~~~--~~---~~~l~~~--~~~~~~~~l~ 221 (293)
T 3t15_A 161 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCTGIFRTDN--VP---AEDVVKI--VDNFPGQSID 221 (293)
T ss_dssp ECSSCCC--CHHHHHHHEEEEEE--CCCHHHHHHHHHHHHGGGC--CC---HHHHHHH--HHHSCSCCHH
T ss_pred ecCCcccCCHHHhCCCCCceeEe--CcCHHHHHHHHHHhccCCC--CC---HHHHHHH--hCCCCcccHH
Confidence 99999999999999999999997 4799999999998876443 22 3334444 3457777664
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.91 E-value=5.9e-27 Score=265.91 Aligned_cols=216 Identities=22% Similarity=0.352 Sum_probs=168.4
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecccc--
Q 010133 197 KHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVH-- 274 (517)
Q Consensus 197 ~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~-- 274 (517)
.+..+|+++++.++.|+.+.+.+...+..+..|...|++.++++|||||||||||+||++||++++.+++.++++.+.
T Consensus 471 ~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~ 550 (806)
T 1ypw_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTC
T ss_pred CccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhh
Confidence 345689999999999999988777777778888999999999999999999999999999999999999999998863
Q ss_pred ----ChHHHHHHHHhcc--CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHH
Q 010133 275 ----NNSELRKLLMKTS--SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLS 348 (517)
Q Consensus 275 ----~~~~L~~lf~~~~--~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 348 (517)
....++.+|..+. .||||||||||.++...+.. ...........++
T Consensus 551 ~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~----------------------------~~~~~~~~~~v~~ 602 (806)
T 1ypw_A 551 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGN----------------------------IGDGGGAADRVIN 602 (806)
T ss_dssp CTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTC----------------------------CSHHHHHHHHHHH
T ss_pred hcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCC----------------------------CCCcchhHHHHHH
Confidence 3567888887763 78999999999985211000 0001123567899
Q ss_pred HHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhh
Q 010133 349 GLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDVV 428 (517)
Q Consensus 349 ~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~ 428 (517)
.||+.|||+... ..++||+|||+++.|||||+|||||+.+|++++|+.+++..|++.++....... +..+..+++.
T Consensus 603 ~LL~~ld~~~~~--~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~l~~la~~- 678 (806)
T 1ypw_A 603 QILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK-DVDLEFLAKM- 678 (806)
T ss_dssp HHHTTCC--------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC-----CCCCSCSCGG-
T ss_pred HHHHHHhccccc--CCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCc-ccCHHHHHHh-
Confidence 999999998553 568999999999999999999999999999999999999999999986543211 1122333333
Q ss_pred CCCCCCHHHHHHHHHHh
Q 010133 429 GKAEMTPADISEVLIKN 445 (517)
Q Consensus 429 ~~~~~spadi~~~l~~~ 445 (517)
+.+||++||..++...
T Consensus 679 -t~g~sgadi~~l~~~a 694 (806)
T 1ypw_A 679 -TNGFSGADLTEICQRA 694 (806)
T ss_dssp -GSSSCCHHHHHHHHHH
T ss_pred -ccccCHHHHHHHHHHH
Confidence 5789999999988744
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.88 E-value=3.8e-22 Score=226.49 Aligned_cols=210 Identities=25% Similarity=0.320 Sum_probs=173.0
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccC--
Q 010133 198 HPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHN-- 275 (517)
Q Consensus 198 ~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~-- 275 (517)
.+.+|++|+|.++.++.|.+.+..++..++.|..++++.++++|||||||||||+|+++||+.++.+++.+++.++.+
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~ 278 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhh
Confidence 456899999999999999999999999999999999999999999999999999999999999999999999887632
Q ss_pred ----hHHHHHHHHhc--cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHH
Q 010133 276 ----NSELRKLLMKT--SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSG 349 (517)
Q Consensus 276 ----~~~L~~lf~~~--~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 349 (517)
...++.+|..+ ..|+||||||||.++...+ ..........+..
T Consensus 279 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~-------------------------------~~~~~~~~~~~~~ 327 (806)
T 1ypw_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKRE-------------------------------KTHGEVERRIVSQ 327 (806)
T ss_dssp TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTS-------------------------------CCCSHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccc-------------------------------cccchHHHHHHHH
Confidence 34577777765 3789999999999852110 0112334677889
Q ss_pred HHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhhC
Q 010133 350 LLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDVVG 429 (517)
Q Consensus 350 LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~~ 429 (517)
|+..++|.... ..+++|+|||+++.||+++.|+|||+..|.++.|+.++|..+++.++...... .+..+..++..
T Consensus 328 Ll~ll~g~~~~--~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~-- 402 (806)
T 1ypw_A 328 LLTLMDGLKQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANE-- 402 (806)
T ss_dssp HHHHHHSSCTT--SCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCC-TTCCTHHHHHS--
T ss_pred HHHHhhhhccc--ccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCc-ccchhHHHHHh--
Confidence 99999998654 45899999999999999999999999999999999999999999887654322 12234555554
Q ss_pred CCCCCHHHHHHHHH
Q 010133 430 KAEMTPADISEVLI 443 (517)
Q Consensus 430 ~~~~spadi~~~l~ 443 (517)
+.+++++++..++.
T Consensus 403 t~g~~g~dl~~l~~ 416 (806)
T 1ypw_A 403 THGHVGADLAALCS 416 (806)
T ss_dssp CSSCCHHHHHHHHH
T ss_pred hcCcchHHHHHHHH
Confidence 78999999988765
No 30
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.83 E-value=3.9e-19 Score=181.47 Aligned_cols=193 Identities=16% Similarity=0.158 Sum_probs=150.8
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccC
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHN 275 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~ 275 (517)
...|.+|++++|.+..++.+...+...... .....++||+||||||||++|+++|+.++.+++.+++..+..
T Consensus 22 ~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~--------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~ 93 (338)
T 3pfi_A 22 SLRPSNFDGYIGQESIKKNLNVFIAAAKKR--------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEK 93 (338)
T ss_dssp -CCCCSGGGCCSCHHHHHHHHHHHHHHHHT--------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHHhc--------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccc
Confidence 457889999999999998887766655432 123458999999999999999999999999999999999888
Q ss_pred hHHHHHHHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhc
Q 010133 276 NSELRKLLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTD 355 (517)
Q Consensus 276 ~~~L~~lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lD 355 (517)
...+..++.....+++|||||||.+. ...+..|+..++
T Consensus 94 ~~~~~~~~~~~~~~~vl~lDEi~~l~------------------------------------------~~~~~~Ll~~l~ 131 (338)
T 3pfi_A 94 SGDLAAILTNLSEGDILFIDEIHRLS------------------------------------------PAIEEVLYPAME 131 (338)
T ss_dssp HHHHHHHHHTCCTTCEEEEETGGGCC------------------------------------------HHHHHHHHHHHH
T ss_pred hhHHHHHHHhccCCCEEEEechhhcC------------------------------------------HHHHHHHHHHHH
Confidence 88888999888899999999999861 234556666665
Q ss_pred CCccc--------------CCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhH
Q 010133 356 GLWSC--------------CGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETL 421 (517)
Q Consensus 356 g~~s~--------------~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~ 421 (517)
...-. .....++|++||....++++|++ ||+..|.+++|+.+++..+++.++......++.+.+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~ 209 (338)
T 3pfi_A 132 DYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAA 209 (338)
T ss_dssp TSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHH
T ss_pred hccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 43100 00136899999999999999999 999999999999999999999887655545556667
Q ss_pred HHHHHhhCCCCCCHHHHHHHHH
Q 010133 422 KELEDVVGKAEMTPADISEVLI 443 (517)
Q Consensus 422 ~~i~~l~~~~~~spadi~~~l~ 443 (517)
..+... ..-++.++.+++.
T Consensus 210 ~~l~~~---~~G~~r~l~~~l~ 228 (338)
T 3pfi_A 210 LEIAKR---SRSTPRIALRLLK 228 (338)
T ss_dssp HHHHHT---TTTCHHHHHHHHH
T ss_pred HHHHHH---HCcCHHHHHHHHH
Confidence 666663 3345666665554
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.81 E-value=2e-21 Score=207.32 Aligned_cols=214 Identities=12% Similarity=0.071 Sum_probs=125.0
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhC--CceEEEeeccccC
Q 010133 198 HPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLG--YDIYDLELTEVHN 275 (517)
Q Consensus 198 ~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~--~~i~~l~l~~~~~ 275 (517)
+...|++++|.++.++.+...+..+. .|...++|+|||||||||||++|+++|++++ .+++.++++.+.+
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~~~--------~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVELIK--------SKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHHH--------TTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred hhhchhhccCHHHHHHHHHHHHHHHH--------hCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 34468999999999988766543332 3556678999999999999999999999999 9999999988742
Q ss_pred -----hHHHHHHHHhc-----cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhh
Q 010133 276 -----NSELRKLLMKT-----SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSI 345 (517)
Q Consensus 276 -----~~~L~~lf~~~-----~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (517)
...++.+|..+ ..||||||||||+++...+... .. ...........++.. ........
T Consensus 104 ~~~~~~~~~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~---~~---~~~~~~~~~~~~l~~------~~~~~~~~ 171 (456)
T 2c9o_A 104 TEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENP---MG---GYGKTISHVIIGLKT------AKGTKQLK 171 (456)
T ss_dssp SSSCHHHHHHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------------CEEEEEEE------TTEEEEEE
T ss_pred HhhhhhHHHHHHHHHHHhhhhcCCcEEEEechhhcccccCCCC---CC---CcchHHHHHHHHHhc------cccchhHh
Confidence 23488888876 4789999999999863211110 00 000000000000000 00011123
Q ss_pred HHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCcee--eEeccCCC--HHHHHHHHHHhcCCCCCCCChHhH
Q 010133 346 TLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDM--HIFMSYCS--YPALLILLKNYLGYEESDLEDETL 421 (517)
Q Consensus 346 ~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~--~I~~~~p~--~e~~~~l~~~~l~~~~~~~~~~~~ 421 (517)
..+.++..++......+..++|++|||+++.+|+|+.||||||. .+.++.|+ .++|+.+++.+. ...+
T Consensus 172 ~~~~ll~~l~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~--------~~dl 243 (456)
T 2c9o_A 172 LDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVT--------LHDL 243 (456)
T ss_dssp ECHHHHHHHHHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEE--------HHHH
T ss_pred hhHHHHHHHhhccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHH--------HHHH
Confidence 34556666653222233445555899999999999999999999 56667774 355555544322 1233
Q ss_pred HHHHHhhCCCCCCHHHHHHHHH
Q 010133 422 KELEDVVGKAEMTPADISEVLI 443 (517)
Q Consensus 422 ~~i~~l~~~~~~spadi~~~l~ 443 (517)
+.++.. +.| ++|+..+|.
T Consensus 244 ~~~a~~--t~g--gadl~~l~~ 261 (456)
T 2c9o_A 244 DVANAR--PQG--GQDILSMMG 261 (456)
T ss_dssp HHTC------------------
T ss_pred HHHHHh--CCC--hhHHHHHHh
Confidence 444332 445 778877764
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.80 E-value=5.7e-19 Score=177.67 Aligned_cols=183 Identities=17% Similarity=0.184 Sum_probs=138.0
Q ss_pred cccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCc---ceEEeCCCCCcHHHHHHHHHHHh-------CCceEEEeeccc
Q 010133 204 TLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKR---GYLLYGPPGTGKSSMIAAMANYL-------GYDIYDLELTEV 273 (517)
Q Consensus 204 tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~r---g~LL~GpPGTGKTsla~alA~~l-------~~~i~~l~l~~~ 273 (517)
+++|.++.|+.|.+.+..+.. +..+...|+..++ ++|||||||||||++|+++|+.+ +.+++.++++.+
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 689999999999887766553 5667777765543 59999999999999999999998 338899998876
Q ss_pred cC------hHHHHHHHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHH
Q 010133 274 HN------NSELRKLLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITL 347 (517)
Q Consensus 274 ~~------~~~L~~lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 347 (517)
.. ...+..+|..+ .++||||||||.++. .+. ........+
T Consensus 111 ~~~~~g~~~~~~~~~~~~~-~~~vl~iDEid~l~~---~~~------------------------------~~~~~~~~~ 156 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA-MGGVLFIDEAYYLYR---PDN------------------------------ERDYGQEAI 156 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH-TTSEEEEETGGGSCC---CC---------------------------------CCTHHHH
T ss_pred hhhcccccHHHHHHHHHhc-CCCEEEEEChhhhcc---CCC------------------------------cccccHHHH
Confidence 32 34466677665 578999999999741 110 012345677
Q ss_pred HHHHHhhcCCcccCCCceEEEEEeCCCC-----CCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHH
Q 010133 348 SGLLNFTDGLWSCCGSEKIFVFTTNHIE-----KLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLK 422 (517)
Q Consensus 348 s~LLn~lDg~~s~~~~~~iiI~TTN~~e-----~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~ 422 (517)
..|++.++.. ....++|+|||..+ .++|+|++ ||+.+|+|++|+.+++..+++.++......++.+.+.
T Consensus 157 ~~Ll~~l~~~----~~~~~~i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~ 230 (309)
T 3syl_A 157 EILLQVMENN----RDDLVVILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAET 230 (309)
T ss_dssp HHHHHHHHHC----TTTCEEEEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHH
T ss_pred HHHHHHHhcC----CCCEEEEEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 8888888864 23478888887653 35899999 9999999999999999999999987655555566666
Q ss_pred HHHHh
Q 010133 423 ELEDV 427 (517)
Q Consensus 423 ~i~~l 427 (517)
.+...
T Consensus 231 ~l~~~ 235 (309)
T 3syl_A 231 ALRAY 235 (309)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 33
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.80 E-value=2.2e-18 Score=174.39 Aligned_cols=192 Identities=16% Similarity=0.158 Sum_probs=148.9
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccCh
Q 010133 197 KHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNN 276 (517)
Q Consensus 197 ~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~~ 276 (517)
..|.+|++++|.+..++.+...+...... + ...+++||+||||||||++|+++|+.++.+++.++++.+...
T Consensus 6 ~~p~~~~~~ig~~~~~~~l~~~l~~~~~~-------~-~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 77 (324)
T 1hqc_A 6 LRPKTLDEYIGQERLKQKLRVYLEAAKAR-------K-EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP 77 (324)
T ss_dssp CCCCSTTTCCSCHHHHHHHHHHHHHHHHH-------C-SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSH
T ss_pred cCcccHHHhhCHHHHHHHHHHHHHHHHcc-------C-CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCCh
Confidence 46789999999999988887766655421 1 224689999999999999999999999999999999998888
Q ss_pred HHHHHHHHh-ccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhc
Q 010133 277 SELRKLLMK-TSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTD 355 (517)
Q Consensus 277 ~~L~~lf~~-~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lD 355 (517)
..+...|.. ...+++|||||||.+. ......|+..++
T Consensus 78 ~~l~~~l~~~~~~~~~l~lDEi~~l~------------------------------------------~~~~~~L~~~l~ 115 (324)
T 1hqc_A 78 GDLAAILANSLEEGDILFIDEIHRLS------------------------------------------RQAEEHLYPAME 115 (324)
T ss_dssp HHHHHHHTTTCCTTCEEEETTTTSCC------------------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCEEEEECCcccc------------------------------------------cchHHHHHHHHH
Confidence 888888877 6788999999999861 123445555554
Q ss_pred CCc-----cc---------CCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhH
Q 010133 356 GLW-----SC---------CGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETL 421 (517)
Q Consensus 356 g~~-----s~---------~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~ 421 (517)
... +. .....++|++||.+..++++|.+ ||+..+.+++|+.+++..+++.++...+..++.+.+
T Consensus 116 ~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~ 193 (324)
T 1hqc_A 116 DFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAA 193 (324)
T ss_dssp HSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHH
T ss_pred hhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 321 00 01236799999999999999998 999999999999999999999988666556667777
Q ss_pred HHHHHhhCCCCCCHHHHHHHHH
Q 010133 422 KELEDVVGKAEMTPADISEVLI 443 (517)
Q Consensus 422 ~~i~~l~~~~~~spadi~~~l~ 443 (517)
..+... .+-.|.++.+++.
T Consensus 194 ~~l~~~---~~G~~r~l~~~l~ 212 (324)
T 1hqc_A 194 LEIGRR---SRGTMRVAKRLFR 212 (324)
T ss_dssp HHHHHH---SCSCHHHHHHHHH
T ss_pred HHHHHH---ccCCHHHHHHHHH
Confidence 777665 2346777777665
No 34
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.77 E-value=1.3e-19 Score=191.06 Aligned_cols=162 Identities=16% Similarity=0.183 Sum_probs=72.5
Q ss_pred cccCChHHHHHHHHHHHHHHhchhHHHhhCC-CCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecccc--------
Q 010133 204 TLAIDPEKKIEIMEDLKDFANGMSFYQKTGR-AWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVH-------- 274 (517)
Q Consensus 204 tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~-~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~-------- 274 (517)
.|+|.++.|+.+...+....++...+...+. .+++++||+||||||||++|+++|+.++.+++.++++.+.
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d 95 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeecc
Confidence 5789999999998877666555554444443 3568999999999999999999999999999999987652
Q ss_pred ChHHHHHHHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhh
Q 010133 275 NNSELRKLLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFT 354 (517)
Q Consensus 275 ~~~~L~~lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~l 354 (517)
....++.+|..+. .++++|++|.+.+ . .........++.||+.|
T Consensus 96 ~e~~lr~lf~~a~--~~~~~De~d~~~~---~-------------------------------~~~~~e~rvl~~LL~~~ 139 (444)
T 1g41_A 96 VDSIIRDLTDSAM--KLVRQQEIAKNRA---R-------------------------------AEDVAEERILDALLPPA 139 (444)
T ss_dssp THHHHHHHHHHHH--HHHHHHHHHSCC-----------------------------------------------------
T ss_pred HHHHHHHHHHHHH--hcchhhhhhhhhc---c-------------------------------chhhHHHHHHHHHHHHh
Confidence 2456777776653 2345788776421 0 01233568899999999
Q ss_pred cCCcccCCCceEEEEE-eCCCCCCChhhhccCCceeeEeccCCCHH-HHHHHH
Q 010133 355 DGLWSCCGSEKIFVFT-TNHIEKLDPALLRSGRMDMHIFMSYCSYP-ALLILL 405 (517)
Q Consensus 355 Dg~~s~~~~~~iiI~T-TN~~e~LD~ALlRpGR~d~~I~~~~p~~e-~~~~l~ 405 (517)
||+.+.. .+ +++ ||+++.|||||+||||||++|+++.|+.. .+..++
T Consensus 140 dg~~~~~---~v-~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 140 KNQWGEV---EN-HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp -----------------------------------------------------
T ss_pred hcccccc---cc-ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhh
Confidence 9996642 23 444 99999999999999999999999999876 444443
No 35
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.77 E-value=1.7e-17 Score=166.25 Aligned_cols=173 Identities=18% Similarity=0.254 Sum_probs=122.2
Q ss_pred cccCChHHHHHHHHHHHHHHhchhHHHhh-CCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccC-------
Q 010133 204 TLAIDPEKKIEIMEDLKDFANGMSFYQKT-GRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHN------- 275 (517)
Q Consensus 204 tv~~~~~~k~~i~~~l~~fl~~~~~y~~~-G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~------- 275 (517)
.|+|.++.++.+...+............. +...+.++||+||||||||++|+++|+.++.+++.++++.+..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 47899999998887776643332111111 1123568999999999999999999999999999999987642
Q ss_pred -hHHHHHHHHhc-------cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHH
Q 010133 276 -NSELRKLLMKT-------SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITL 347 (517)
Q Consensus 276 -~~~L~~lf~~~-------~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 347 (517)
...++.++... ..++||||||||.+.. ... ..+.+.......
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~---~~~---------------------------~~~~~~~~~~~~ 145 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICK---KGE---------------------------YSGADVSREGVQ 145 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSC---CSS---------------------------CCSSHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCc---ccc---------------------------ccccchhHHHHH
Confidence 24466766543 2479999999999731 000 000111223346
Q ss_pred HHHHHhhcCCccc------CCCceEEEEE----eCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHh
Q 010133 348 SGLLNFTDGLWSC------CGSEKIFVFT----TNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNY 408 (517)
Q Consensus 348 s~LLn~lDg~~s~------~~~~~iiI~T----TN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~ 408 (517)
+.||..+++.... .....++|+| ++.+..++|+|++ ||+.+|.|++|+.+++..+++..
T Consensus 146 ~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~ 214 (310)
T 1ofh_A 146 RDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEP 214 (310)
T ss_dssp HHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSS
T ss_pred HHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhh
Confidence 7888888874210 1134677877 5678899999999 99999999999999999998853
No 36
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.76 E-value=1.3e-17 Score=169.19 Aligned_cols=159 Identities=21% Similarity=0.207 Sum_probs=120.7
Q ss_pred CCCceecccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEE
Q 010133 188 GHPWESVSFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYD 267 (517)
Q Consensus 188 ~~~w~~~~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~ 267 (517)
...| +....|.+|+++++.++.++.+.+.+. . | ..+..||++||||||||++++++|+.++.+++.
T Consensus 13 ~~~~--~~k~rP~~~~~ivg~~~~~~~l~~~l~----~-------~-~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~ 78 (324)
T 3u61_B 13 EHIL--EQKYRPSTIDECILPAFDKETFKSITS----K-------G-KIPHIILHSPSPGTGKTTVAKALCHDVNADMMF 78 (324)
T ss_dssp CSSH--HHHSCCCSTTTSCCCHHHHHHHHHHHH----T-------T-CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEE
T ss_pred cchH--HHhhCCCCHHHHhCcHHHHHHHHHHHH----c-------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEE
Confidence 3467 445789999999999988766655443 2 1 234578999999999999999999999999999
Q ss_pred EeeccccChHHHHHHHHh----cc---CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCC
Q 010133 268 LELTEVHNNSELRKLLMK----TS---SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGED 340 (517)
Q Consensus 268 l~l~~~~~~~~L~~lf~~----~~---~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (517)
++++... ...++..+.. .+ .+.||||||+|.+.
T Consensus 79 i~~~~~~-~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~--------------------------------------- 118 (324)
T 3u61_B 79 VNGSDCK-IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSG--------------------------------------- 118 (324)
T ss_dssp EETTTCC-HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGG---------------------------------------
T ss_pred EcccccC-HHHHHHHHHHHHhhcccCCCCeEEEEECCcccC---------------------------------------
Confidence 9988764 5555554433 12 67899999999872
Q ss_pred CchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhc
Q 010133 341 GNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYL 409 (517)
Q Consensus 341 ~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l 409 (517)
.......|+..++... ....+|+|||.+..++++|++ |+. .+.|++|+.+++..++..++
T Consensus 119 --~~~~~~~L~~~le~~~----~~~~iI~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~ 178 (324)
T 3u61_B 119 --LAESQRHLRSFMEAYS----SNCSIIITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMI 178 (324)
T ss_dssp --GHHHHHHHHHHHHHHG----GGCEEEEEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHhCC----CCcEEEEEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHH
Confidence 0224556666666542 236788999999999999999 885 79999999999887776654
No 37
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.74 E-value=5.1e-17 Score=153.50 Aligned_cols=154 Identities=16% Similarity=0.185 Sum_probs=114.3
Q ss_pred ccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh-----CCceEEEe
Q 010133 195 SFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL-----GYDIYDLE 269 (517)
Q Consensus 195 ~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l-----~~~i~~l~ 269 (517)
....|.+|+++++.++.++.+.+.+ ... ...++||+||||||||++++++|+.+ ...++.++
T Consensus 9 ~~~~p~~~~~~~g~~~~~~~l~~~l----~~~---------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 75 (226)
T 2chg_A 9 EKYRPRTLDEVVGQDEVIQRLKGYV----ERK---------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN 75 (226)
T ss_dssp HHTSCSSGGGCCSCHHHHHHHHHHH----HTT---------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE
T ss_pred HhcCCCCHHHHcCcHHHHHHHHHHH----hCC---------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEec
Confidence 3467889999999988776665433 321 12359999999999999999999986 45678888
Q ss_pred eccccChHHHHHHHHh--------ccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCC
Q 010133 270 LTEVHNNSELRKLLMK--------TSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDG 341 (517)
Q Consensus 270 l~~~~~~~~L~~lf~~--------~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (517)
++.......+...+.. ...++||+|||+|.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~---------------------------------------- 115 (226)
T 2chg_A 76 ASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT---------------------------------------- 115 (226)
T ss_dssp TTCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSC----------------------------------------
T ss_pred cccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcC----------------------------------------
Confidence 8766555555444332 1467999999999862
Q ss_pred chhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcC
Q 010133 342 NNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLG 410 (517)
Q Consensus 342 ~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~ 410 (517)
...+..|+..++.. .....+|+|||.++.+++++.+ |+. .+.+++++.++...++..++.
T Consensus 116 --~~~~~~l~~~l~~~----~~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~ 175 (226)
T 2chg_A 116 --ADAQAALRRTMEMY----SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICE 175 (226)
T ss_dssp --HHHHHHHHHHHHHT----TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhc----CCCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHH
Confidence 12344556666543 2346788999999999999999 887 899999999999888887654
No 38
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.74 E-value=5.6e-17 Score=160.66 Aligned_cols=183 Identities=17% Similarity=0.217 Sum_probs=123.1
Q ss_pred ccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecccc---C----
Q 010133 203 DTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVH---N---- 275 (517)
Q Consensus 203 ~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~---~---- 275 (517)
..+++.++..+.++.....+.. .....+.+.++++|||||||||||++|+++|+.++.+++.+++++.. .
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~---~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQ---QTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHH---HHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHH---HHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 3456666666666654322221 22333456678999999999999999999999999999999887531 1
Q ss_pred hHHHHHHHHhc--cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHh
Q 010133 276 NSELRKLLMKT--SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNF 353 (517)
Q Consensus 276 ~~~L~~lf~~~--~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~ 353 (517)
...++.+|..+ ..++||||||||.++.. +. .........+..|+..
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~---~~-----------------------------~~~~~~~~~l~~L~~~ 157 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDY---VP-----------------------------IGPRFSNLVLQALLVL 157 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTC---BT-----------------------------TTTBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhcc---CC-----------------------------CChhHHHHHHHHHHHH
Confidence 13466777664 46899999999998521 10 0112234566677777
Q ss_pred hcCCcccCCCceEEEEEeCCCCCCCh-hhhccCCceeeEeccCCCH-HHHHHHHHHhcCCCCCCCChHhHHHHHHhh
Q 010133 354 TDGLWSCCGSEKIFVFTTNHIEKLDP-ALLRSGRMDMHIFMSYCSY-PALLILLKNYLGYEESDLEDETLKELEDVV 428 (517)
Q Consensus 354 lDg~~s~~~~~~iiI~TTN~~e~LD~-ALlRpGR~d~~I~~~~p~~-e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~ 428 (517)
+++... .+...+||+|||.++.||+ ++.+ ||+..|.+++++. +++..++.... .++...+..+++..
T Consensus 158 ~~~~~~-~~~~~~ii~ttn~~~~l~~~~l~~--rf~~~i~~p~l~~r~~i~~i~~~~~-----~~~~~~~~~l~~~~ 226 (272)
T 1d2n_A 158 LKKAPP-QGRKLLIIGTTSRKDVLQEMEMLN--AFSTTIHVPNIATGEQLLEALELLG-----NFKDKERTTIAQQV 226 (272)
T ss_dssp TTCCCS-TTCEEEEEEEESCHHHHHHTTCTT--TSSEEEECCCEEEHHHHHHHHHHHT-----CSCHHHHHHHHHHH
T ss_pred hcCccC-CCCCEEEEEecCChhhcchhhhhc--ccceEEcCCCccHHHHHHHHHHhcC-----CCCHHHHHHHHHHh
Confidence 776532 2345779999999999988 4555 9999999987765 66666655432 22355566666653
No 39
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.72 E-value=1e-16 Score=165.11 Aligned_cols=186 Identities=17% Similarity=0.217 Sum_probs=124.8
Q ss_pred CCCC-cccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC--ceEEEeecccc
Q 010133 198 HPST-FDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY--DIYDLELTEVH 274 (517)
Q Consensus 198 ~p~~-f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~--~i~~l~l~~~~ 274 (517)
.|.. |++++|.+..++.+.. +...+.. |...++++|||||||||||++|+++|+.++. +++.+++..+.
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~-l~~~~~~-------~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 109 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGV-VLEMIRE-------GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIF 109 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHH-HHHHHHT-------TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGS
T ss_pred CcCcchhhccChHHHHHHHHH-HHHHHHc-------CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhh
Confidence 4554 9999999998877543 3333322 3444579999999999999999999999975 67777754421
Q ss_pred --------------------------------------------------C-----hHHHHHHHHhc-------c----C
Q 010133 275 --------------------------------------------------N-----NSELRKLLMKT-------S----S 288 (517)
Q Consensus 275 --------------------------------------------------~-----~~~L~~lf~~~-------~----~ 288 (517)
. ...++..+... . .
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~ 189 (368)
T 3uk6_A 110 SLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEII 189 (368)
T ss_dssp CSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---C
T ss_pred hcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhcccccc
Confidence 0 22344444322 1 2
Q ss_pred CcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEE
Q 010133 289 KSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFV 368 (517)
Q Consensus 289 ~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI 368 (517)
|+||||||||.+ ....++.|+..++... . .++|
T Consensus 190 ~~vl~IDEi~~l------------------------------------------~~~~~~~L~~~le~~~----~-~~~i 222 (368)
T 3uk6_A 190 PGVLFIDEVHML------------------------------------------DIESFSFLNRALESDM----A-PVLI 222 (368)
T ss_dssp BCEEEEESGGGS------------------------------------------BHHHHHHHHHHTTCTT----C-CEEE
T ss_pred CceEEEhhcccc------------------------------------------ChHHHHHHHHHhhCcC----C-Ceee
Confidence 689999999986 1345667777776531 2 2444
Q ss_pred EEeC------------CCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhhCCCCCCHH
Q 010133 369 FTTN------------HIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDVVGKAEMTPA 436 (517)
Q Consensus 369 ~TTN------------~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~~~~~~spa 436 (517)
++|| .+..++++|++ ||.. |.|++|+.+++..+++.++...+..++.+.+..+.+..+ +-+++
T Consensus 223 i~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~--~G~~r 297 (368)
T 3uk6_A 223 MATNRGITRIRGTSYQSPHGIPIDLLD--RLLI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGL--ETSLR 297 (368)
T ss_dssp EEESCSEEECBTSSCEEETTCCHHHHT--TEEE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHH--HSCHH
T ss_pred eecccceeeeeccCCCCcccCCHHHHh--hccE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhc--CCCHH
Confidence 4443 57889999999 9976 899999999999999988765554455555665555421 13445
Q ss_pred HHHHHHH
Q 010133 437 DISEVLI 443 (517)
Q Consensus 437 di~~~l~ 443 (517)
++.++|.
T Consensus 298 ~~~~ll~ 304 (368)
T 3uk6_A 298 YAIQLIT 304 (368)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444443
No 40
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.72 E-value=5.5e-16 Score=147.99 Aligned_cols=171 Identities=19% Similarity=0.278 Sum_probs=120.9
Q ss_pred ccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC-----------
Q 010133 195 SFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY----------- 263 (517)
Q Consensus 195 ~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~----------- 263 (517)
....|.+|+++++.+..++.+...+.. | ..++.+||+||||||||++++++|+.++.
T Consensus 15 ~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~ 82 (250)
T 1njg_A 15 RKWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 82 (250)
T ss_dssp HHTCCCSGGGCCSCHHHHHHHHHHHHH-----------T-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSC
T ss_pred hccCCccHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 346788999999999887776554432 1 11347999999999999999999998854
Q ss_pred -------------ceEEEeeccccChHHHHHHHHhcc------CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCC
Q 010133 264 -------------DIYDLELTEVHNNSELRKLLMKTS------SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNY 324 (517)
Q Consensus 264 -------------~i~~l~l~~~~~~~~L~~lf~~~~------~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (517)
+++.++.........++.++.... .+.+|+|||+|.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l------------------------ 138 (250)
T 1njg_A 83 CDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML------------------------ 138 (250)
T ss_dssp SHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGS------------------------
T ss_pred cHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccc------------------------
Confidence 234444333233445667776542 5789999999985
Q ss_pred CCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHH
Q 010133 325 YEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLIL 404 (517)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l 404 (517)
....+..|+..++.. ....++|++||.++.+++++.+ |+ ..|.+++++.++...+
T Consensus 139 ------------------~~~~~~~l~~~l~~~----~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~ 193 (250)
T 1njg_A 139 ------------------SRHSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQ 193 (250)
T ss_dssp ------------------CHHHHHHHHHHHHSC----CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHH
T ss_pred ------------------cHHHHHHHHHHHhcC----CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHH
Confidence 123556677777654 2457889999999999999998 75 6899999999999999
Q ss_pred HHHhcCCCCCCCChHhHHHHHH
Q 010133 405 LKNYLGYEESDLEDETLKELED 426 (517)
Q Consensus 405 ~~~~l~~~~~~~~~~~~~~i~~ 426 (517)
++.++...+..++.+.+..+.+
T Consensus 194 l~~~~~~~~~~~~~~~~~~l~~ 215 (250)
T 1njg_A 194 LEHILNEEHIAHEPRALQLLAR 215 (250)
T ss_dssp HHHHHHHTTCCBCHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHH
Confidence 9887644333333444444433
No 41
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.70 E-value=1.2e-16 Score=165.07 Aligned_cols=174 Identities=21% Similarity=0.259 Sum_probs=118.4
Q ss_pred ccCChHHHHHHHHHHHHHHhchhH-HHhhCC-CCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccC-------
Q 010133 205 LAIDPEKKIEIMEDLKDFANGMSF-YQKTGR-AWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHN------- 275 (517)
Q Consensus 205 v~~~~~~k~~i~~~l~~fl~~~~~-y~~~G~-~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~------- 275 (517)
|+|.+..++.+...+......... ....+. ..++++||+||||||||++|++||+.++.+++.++++.+..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 689999999888877654433211 111122 24678999999999999999999999999999999988742
Q ss_pred -hHHHHHHHHhc------cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHH
Q 010133 276 -NSELRKLLMKT------SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLS 348 (517)
Q Consensus 276 -~~~L~~lf~~~------~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 348 (517)
...+..+|... ..++||||||||.+.. .+. ....+.+......++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~---~~~-------------------------~~~~~~~~~~~~~~~ 148 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISR---KSD-------------------------NPSITRDVSGEGVQQ 148 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCC---CSS-------------------------CC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcc---ccc-------------------------ccccccccchHHHHH
Confidence 23455666554 3579999999998731 110 000001112234789
Q ss_pred HHHHhhcCCccc-----------------CCCceEEEEEeCCC----------CC-------------------------
Q 010133 349 GLLNFTDGLWSC-----------------CGSEKIFVFTTNHI----------EK------------------------- 376 (517)
Q Consensus 349 ~LLn~lDg~~s~-----------------~~~~~iiI~TTN~~----------e~------------------------- 376 (517)
.||..|||.... ...++++|+|+|.. ..
T Consensus 149 ~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~ 228 (363)
T 3hws_A 149 ALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQ 228 (363)
T ss_dssp HHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHT
T ss_pred HHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHh
Confidence 999999964210 11234556665542 11
Q ss_pred ----------CChhhhccCCceeeEeccCCCHHHHHHHHHHh
Q 010133 377 ----------LDPALLRSGRMDMHIFMSYCSYPALLILLKNY 408 (517)
Q Consensus 377 ----------LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~ 408 (517)
+.|+|+. |||..+.|.+|+.+.+..|+...
T Consensus 229 v~~~~l~~~~~~~~l~~--R~~~~~~~~pl~~~~~~~I~~~~ 268 (363)
T 3hws_A 229 VEPEDLIKFGLIPEFIG--RLPVVATLNELSEEALIQILKEP 268 (363)
T ss_dssp CCHHHHHHHTCCHHHHT--TCCEEEECCCCCHHHHHHHHHSS
T ss_pred CCHHHHHHcCCCHHHhc--ccCeeeecCCCCHHHHHHHHHHH
Confidence 7888988 99999999999999999988763
No 42
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.70 E-value=1.8e-16 Score=171.51 Aligned_cols=189 Identities=19% Similarity=0.314 Sum_probs=128.0
Q ss_pred CCCceecccCCCCCcccccCChHHHHHHHHHHHHHHhch-hHHHhhCC---CCCcceEEeCCCCCcHHHHHHHHHHHhCC
Q 010133 188 GHPWESVSFKHPSTFDTLAIDPEKKIEIMEDLKDFANGM-SFYQKTGR---AWKRGYLLYGPPGTGKSSMIAAMANYLGY 263 (517)
Q Consensus 188 ~~~w~~~~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~-~~y~~~G~---~~~rg~LL~GpPGTGKTsla~alA~~l~~ 263 (517)
...| +....|.+|++++|.+..++.+.+.+..+.... ..|...|. +.++++||+||||||||++|+++|+++++
T Consensus 26 ~~lW--~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~ 103 (516)
T 1sxj_A 26 DKLW--TVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY 103 (516)
T ss_dssp CCCH--HHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCc--ccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3467 456789999999999999888888777655432 33333443 35679999999999999999999999999
Q ss_pred ceEEEeeccccChHHHHHHHH-------------hc-------cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCC
Q 010133 264 DIYDLELTEVHNNSELRKLLM-------------KT-------SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGN 323 (517)
Q Consensus 264 ~i~~l~l~~~~~~~~L~~lf~-------------~~-------~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (517)
+++.++++.......+...+. .. ..++||||||||.+..
T Consensus 104 ~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~--------------------- 162 (516)
T 1sxj_A 104 DILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSG--------------------- 162 (516)
T ss_dssp EEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCT---------------------
T ss_pred CEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccch---------------------
Confidence 999999998766544433332 11 4678999999998731
Q ss_pred CCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCC--CCCChhhhccCCceeeEeccCCCHHHH
Q 010133 324 YYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHI--EKLDPALLRSGRMDMHIFMSYCSYPAL 401 (517)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~--e~LD~ALlRpGR~d~~I~~~~p~~e~~ 401 (517)
..+..+..|++.++.. . ..+|++||.. ..++ .+. |+...|.|++|+.+++
T Consensus 163 ------------------~~~~~l~~L~~~l~~~-----~-~~iIli~~~~~~~~l~-~l~---~r~~~i~f~~~~~~~~ 214 (516)
T 1sxj_A 163 ------------------GDRGGVGQLAQFCRKT-----S-TPLILICNERNLPKMR-PFD---RVCLDIQFRRPDANSI 214 (516)
T ss_dssp ------------------TSTTHHHHHHHHHHHC-----S-SCEEEEESCTTSSTTG-GGT---TTSEEEECCCCCHHHH
T ss_pred ------------------hhHHHHHHHHHHHHhc-----C-CCEEEEEcCCCCccch-hhH---hceEEEEeCCCCHHHH
Confidence 0112345566665532 1 1234444432 3343 344 4457899999999999
Q ss_pred HHHHHHhcCCCCCCCChHhHHHHHHh
Q 010133 402 LILLKNYLGYEESDLEDETLKELEDV 427 (517)
Q Consensus 402 ~~l~~~~l~~~~~~~~~~~~~~i~~l 427 (517)
..++...+...+..++.+.+..|.+.
T Consensus 215 ~~~L~~i~~~~~~~i~~~~l~~la~~ 240 (516)
T 1sxj_A 215 KSRLMTIAIREKFKLDPNVIDRLIQT 240 (516)
T ss_dssp HHHHHHHHHHHTCCCCTTHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 98888776544444445556665554
No 43
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.70 E-value=2.6e-16 Score=158.26 Aligned_cols=159 Identities=16% Similarity=0.281 Sum_probs=114.7
Q ss_pred cccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccccChHHHH
Q 010133 204 TLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVHNNSELR 280 (517)
Q Consensus 204 tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~~~~~L~ 280 (517)
.++|.+..++.+...+......-. . ...+..++||+||||||||++|+++|+.+ +.+++.++|+.+.......
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~---~-~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLK---D-PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCS---C-TTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCC---C-CCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 467888888887777665542210 0 01112369999999999999999999998 6679999998875543333
Q ss_pred HHHH---------------h---ccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCc
Q 010133 281 KLLM---------------K---TSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGN 342 (517)
Q Consensus 281 ~lf~---------------~---~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (517)
.++. . ....+||||||||.+
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l------------------------------------------ 131 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA------------------------------------------ 131 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGS------------------------------------------
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhc------------------------------------------
Confidence 3331 1 124589999999986
Q ss_pred hhhHHHHHHHhhcCCcccCC-------CceEEEEEeCC--------------------------CCCCChhhhccCCcee
Q 010133 343 NSITLSGLLNFTDGLWSCCG-------SEKIFVFTTNH--------------------------IEKLDPALLRSGRMDM 389 (517)
Q Consensus 343 ~~~~ls~LLn~lDg~~s~~~-------~~~iiI~TTN~--------------------------~e~LD~ALlRpGR~d~ 389 (517)
....++.|+..|+...-..+ .+.++|+|||. ...++|+|+. ||+.
T Consensus 132 ~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~ 209 (311)
T 4fcw_A 132 HPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDE 209 (311)
T ss_dssp CHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSE
T ss_pred CHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCe
Confidence 23456677777764321111 25789999998 5578999998 9999
Q ss_pred eEeccCCCHHHHHHHHHHhcC
Q 010133 390 HIFMSYCSYPALLILLKNYLG 410 (517)
Q Consensus 390 ~I~~~~p~~e~~~~l~~~~l~ 410 (517)
.+.+.+|+.+++..|++.++.
T Consensus 210 ~~~~~p~~~~~~~~i~~~~l~ 230 (311)
T 4fcw_A 210 IVVFRPLTKEQIRQIVEIQMS 230 (311)
T ss_dssp EEECCCCCHHHHHHHHHHHTH
T ss_pred EEEeCCCCHHHHHHHHHHHHH
Confidence 999999999999999998874
No 44
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.68 E-value=3.4e-16 Score=157.34 Aligned_cols=173 Identities=17% Similarity=0.224 Sum_probs=123.9
Q ss_pred CceecccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh-----CCc
Q 010133 190 PWESVSFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL-----GYD 264 (517)
Q Consensus 190 ~w~~~~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l-----~~~ 264 (517)
+| +....|.+|++++|.+..++.+.+.+ .. |. ..+||||||||||||++++++|+.+ +.+
T Consensus 6 ~~--~~k~~p~~~~~~~g~~~~~~~l~~~l----~~-------~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~ 70 (319)
T 2chq_A 6 IW--VEKYRPRTLDEVVGQDEVIQRLKGYV----ER-------KN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDN 70 (319)
T ss_dssp CT--TTTTSCSSGGGSCSCHHHHHHHHTTT----TT-------TC--CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHH
T ss_pred cH--HHhcCCCCHHHHhCCHHHHHHHHHHH----hC-------CC--CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCC
Confidence 46 34578899999999988876654433 22 11 1249999999999999999999987 456
Q ss_pred eEEEeeccccChHHHHHH---HH-hc----cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCC
Q 010133 265 IYDLELTEVHNNSELRKL---LM-KT----SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSV 336 (517)
Q Consensus 265 i~~l~l~~~~~~~~L~~l---f~-~~----~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (517)
++.++++.......++.+ +. .. ..+.||+|||+|.+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~----------------------------------- 115 (319)
T 2chq_A 71 FIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT----------------------------------- 115 (319)
T ss_dssp CEEEETTSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC-----------------------------------
T ss_pred eEEEeCccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC-----------------------------------
Confidence 788888765333222222 22 21 347899999999861
Q ss_pred CCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCC
Q 010133 337 GGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDL 416 (517)
Q Consensus 337 ~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~ 416 (517)
......|+..++.. ....++|++||.++.++++|.+ |+. .+.+++|+.+++..++..++...+..+
T Consensus 116 -------~~~~~~L~~~le~~----~~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i 181 (319)
T 2chq_A 116 -------ADAQAALRRTMEMY----SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKI 181 (319)
T ss_dssp -------HHHHHTTGGGTSSS----SSSEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCB
T ss_pred -------HHHHHHHHHHHHhc----CCCCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 12345566666653 2457889999999999999999 885 899999999999999998876655555
Q ss_pred ChHhHHHHHH
Q 010133 417 EDETLKELED 426 (517)
Q Consensus 417 ~~~~~~~i~~ 426 (517)
+.+.+..+..
T Consensus 182 ~~~~l~~l~~ 191 (319)
T 2chq_A 182 TEDGLEALIY 191 (319)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 5555555544
No 45
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.68 E-value=8e-16 Score=156.60 Aligned_cols=152 Identities=17% Similarity=0.173 Sum_probs=108.3
Q ss_pred CcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccChHHHH
Q 010133 201 TFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNNSELR 280 (517)
Q Consensus 201 ~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~~~~L~ 280 (517)
.++.++|.++.++.+...+.. .+++|||||||||||++|+++|+.++.+++.++++......++.
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~ 89 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLI 89 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHH
T ss_pred hccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcC
Confidence 356678888887766554332 14899999999999999999999999999999986433333321
Q ss_pred HHH--H-------hccC---CcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHH
Q 010133 281 KLL--M-------KTSS---KSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLS 348 (517)
Q Consensus 281 ~lf--~-------~~~~---~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 348 (517)
... . ..+. .+||||||||.+ ....++
T Consensus 90 g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~------------------------------------------~~~~~~ 127 (331)
T 2r44_A 90 GTMIYNQHKGNFEVKKGPVFSNFILADEVNRS------------------------------------------PAKVQS 127 (331)
T ss_dssp EEEEEETTTTEEEEEECTTCSSEEEEETGGGS------------------------------------------CHHHHH
T ss_pred CceeecCCCCceEeccCcccccEEEEEccccC------------------------------------------CHHHHH
Confidence 110 0 0112 379999999985 123456
Q ss_pred HHHHhhcCC-------cccCCCceEEEEEeCCCC-----CCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCC
Q 010133 349 GLLNFTDGL-------WSCCGSEKIFVFTTNHIE-----KLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGY 411 (517)
Q Consensus 349 ~LLn~lDg~-------~s~~~~~~iiI~TTN~~e-----~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~ 411 (517)
.|+..|+.. ........++|+|+|..+ .|+++|++ ||+.++.+++|+.+++..+++.++..
T Consensus 128 ~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 128 ALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp HHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred HHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhcccc
Confidence 666666521 111223467778888554 38999999 99999999999999999999988754
No 46
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.67 E-value=4.7e-16 Score=165.21 Aligned_cols=154 Identities=18% Similarity=0.286 Sum_probs=111.2
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccC
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHN 275 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~ 275 (517)
...|.+|++++|.+..+... ..+...+.. |.. .++|||||||||||++|++||+.++.+++.+++... .
T Consensus 19 r~rP~~l~~ivGq~~~~~~~-~~L~~~i~~-------~~~--~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~-~ 87 (447)
T 3pvs_A 19 RMRPENLAQYIGQQHLLAAG-KPLPRAIEA-------GHL--HSMILWGPPGTGKTTLAEVIARYANADVERISAVTS-G 87 (447)
T ss_dssp HTCCCSTTTCCSCHHHHSTT-SHHHHHHHH-------TCC--CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC-C
T ss_pred HhCCCCHHHhCCcHHHHhch-HHHHHHHHc-------CCC--cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC-C
Confidence 35689999999998876211 222333322 111 479999999999999999999999999999987664 4
Q ss_pred hHHHHHHHHhc------cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHH
Q 010133 276 NSELRKLLMKT------SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSG 349 (517)
Q Consensus 276 ~~~L~~lf~~~------~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 349 (517)
...++.++..+ ..++||||||||.+- ...+..
T Consensus 88 ~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~------------------------------------------~~~q~~ 125 (447)
T 3pvs_A 88 VKEIREAIERARQNRNAGRRTILFVDEVHRFN------------------------------------------KSQQDA 125 (447)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------------------------------------------------C
T ss_pred HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhC------------------------------------------HHHHHH
Confidence 55677776553 368999999999862 112334
Q ss_pred HHHhhcCCcccCCCceEEEEEe--CCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCC
Q 010133 350 LLNFTDGLWSCCGSEKIFVFTT--NHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGY 411 (517)
Q Consensus 350 LLn~lDg~~s~~~~~~iiI~TT--N~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~ 411 (517)
||..++. +.+++|++| |....++++|++ |+. .+.+.+|+.+++..+++.++..
T Consensus 126 LL~~le~------~~v~lI~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~ 180 (447)
T 3pvs_A 126 FLPHIED------GTITFIGATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMED 180 (447)
T ss_dssp CHHHHHT------TSCEEEEEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHC
T ss_pred HHHHHhc------CceEEEecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHH
Confidence 6666664 225566555 555689999999 886 6789999999999999988754
No 47
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.67 E-value=2e-16 Score=145.90 Aligned_cols=152 Identities=20% Similarity=0.285 Sum_probs=104.8
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh----------CCceEE
Q 010133 198 HPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL----------GYDIYD 267 (517)
Q Consensus 198 ~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l----------~~~i~~ 267 (517)
.|.+|+++++.++..+.+.+.+ .. ..++++||+||||||||++++++|+.+ +.+++.
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l----~~---------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 83 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEIRRTIQVL----QR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 83 (195)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHH----TS---------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred hhccccccccchHHHHHHHHHH----hc---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEE
Confidence 4678999999988776665543 22 224689999999999999999999997 788898
Q ss_pred EeeccccC--------hHHHHHHHHh---ccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCC
Q 010133 268 LELTEVHN--------NSELRKLLMK---TSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSV 336 (517)
Q Consensus 268 l~l~~~~~--------~~~L~~lf~~---~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (517)
+++..+.. ...+..++.. ...++||+|||+|.+......
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~------------------------------ 133 (195)
T 1jbk_A 84 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA------------------------------ 133 (195)
T ss_dssp ECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT----------------------------------
T ss_pred eeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcc------------------------------
Confidence 98876531 1234555543 356889999999997421000
Q ss_pred CCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCC-----CCChhhhccCCceeeEeccCCCHHHHHHHH
Q 010133 337 GGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIE-----KLDPALLRSGRMDMHIFMSYCSYPALLILL 405 (517)
Q Consensus 337 ~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e-----~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~ 405 (517)
.........+. ..++. ....+|++||.++ .+|++|++ ||+ .|.+++|+.+++..++
T Consensus 134 -~~~~~~~~~l~---~~~~~------~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 134 -DGAMDAGNMLK---PALAR------GELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ---CCCCHHHHH---HHHHT------TSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred -cchHHHHHHHH---Hhhcc------CCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 00011122222 22222 2467888888776 78999999 998 6999999999987664
No 48
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.66 E-value=1.1e-15 Score=154.11 Aligned_cols=174 Identities=20% Similarity=0.259 Sum_probs=123.1
Q ss_pred CceecccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhC-----Cc
Q 010133 190 PWESVSFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLG-----YD 264 (517)
Q Consensus 190 ~w~~~~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~-----~~ 264 (517)
+| +....|.+|++++|.++.++.+...+. . |.. .++|||||||||||++|+++|+.+. .+
T Consensus 14 ~~--~~k~~p~~~~~~~g~~~~~~~l~~~l~----~-------~~~--~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~ 78 (327)
T 1iqp_A 14 PW--VEKYRPQRLDDIVGQEHIVKRLKHYVK----T-------GSM--PHLLFAGPPGVGKTTAALALARELFGENWRHN 78 (327)
T ss_dssp CH--HHHTCCCSTTTCCSCHHHHHHHHHHHH----H-------TCC--CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHH
T ss_pred ch--hhccCCCCHHHhhCCHHHHHHHHHHHH----c-------CCC--CeEEEECcCCCCHHHHHHHHHHHhcCCcccCc
Confidence 56 345688999999999888776655433 2 111 2599999999999999999999873 34
Q ss_pred eEEEeeccccChHHHHHHHH----hc----cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCC
Q 010133 265 IYDLELTEVHNNSELRKLLM----KT----SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSV 336 (517)
Q Consensus 265 i~~l~l~~~~~~~~L~~lf~----~~----~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (517)
++.+++++......++..+. .. ..+.||+|||+|.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~----------------------------------- 123 (327)
T 1iqp_A 79 FLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALT----------------------------------- 123 (327)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC-----------------------------------
T ss_pred eEEeeccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC-----------------------------------
Confidence 67777765422222222221 11 357899999999861
Q ss_pred CCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCC
Q 010133 337 GGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDL 416 (517)
Q Consensus 337 ~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~ 416 (517)
....+.|+..++.. .....+|++||.++.+++++.+ |+. .+.|++++.++...+++.++...+..+
T Consensus 124 -------~~~~~~L~~~le~~----~~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~ 189 (327)
T 1iqp_A 124 -------QDAQQALRRTMEMF----SSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLEL 189 (327)
T ss_dssp -------HHHHHHHHHHHHHT----TTTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEE
T ss_pred -------HHHHHHHHHHHHhc----CCCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCC
Confidence 22455667766653 2346788899999999999998 886 789999999999999988876555445
Q ss_pred ChHhHHHHHHh
Q 010133 417 EDETLKELEDV 427 (517)
Q Consensus 417 ~~~~~~~i~~l 427 (517)
+++.++.+...
T Consensus 190 ~~~~~~~l~~~ 200 (327)
T 1iqp_A 190 TEEGLQAILYI 200 (327)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 55555555554
No 49
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.66 E-value=7.2e-16 Score=157.45 Aligned_cols=175 Identities=19% Similarity=0.284 Sum_probs=124.7
Q ss_pred CCceecccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhC------
Q 010133 189 HPWESVSFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLG------ 262 (517)
Q Consensus 189 ~~w~~~~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~------ 262 (517)
.+|. ....|.+|++++|.++.++.+.. ++.. |. ..++|||||||||||++++++|+.++
T Consensus 25 ~~~~--~k~~p~~~~~i~g~~~~~~~l~~----~l~~-------~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~ 89 (353)
T 1sxj_D 25 QPWV--EKYRPKNLDEVTAQDHAVTVLKK----TLKS-------AN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMK 89 (353)
T ss_dssp -CHH--HHTCCSSTTTCCSCCTTHHHHHH----HTTC-------TT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHT
T ss_pred ccHH--HhcCCCCHHHhhCCHHHHHHHHH----HHhc-------CC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccc
Confidence 3673 45689999999999988766544 3332 11 12499999999999999999999864
Q ss_pred CceEEEeeccccChHHHHHHH---Hh---------------ccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCC
Q 010133 263 YDIYDLELTEVHNNSELRKLL---MK---------------TSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNY 324 (517)
Q Consensus 263 ~~i~~l~l~~~~~~~~L~~lf---~~---------------~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (517)
..++.+++++......++..+ .. .+.+.||+|||+|.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~----------------------- 146 (353)
T 1sxj_D 90 SRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT----------------------- 146 (353)
T ss_dssp TSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC-----------------------
T ss_pred cceEEEccccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccC-----------------------
Confidence 467788887754444443332 21 1245699999999862
Q ss_pred CCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHH
Q 010133 325 YEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLIL 404 (517)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l 404 (517)
....+.|+..++... ....+|++||+++.++++|.+ |+. .+.+++|+.++...+
T Consensus 147 -------------------~~~~~~Ll~~le~~~----~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~ 200 (353)
T 1sxj_D 147 -------------------ADAQSALRRTMETYS----GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDR 200 (353)
T ss_dssp -------------------HHHHHHHHHHHHHTT----TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHhcC----CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHH
Confidence 223466777776542 235677789999999999999 886 889999999999999
Q ss_pred HHHhcCCCCCCCChHhHHHHHHh
Q 010133 405 LKNYLGYEESDLEDETLKELEDV 427 (517)
Q Consensus 405 ~~~~l~~~~~~~~~~~~~~i~~l 427 (517)
+...+...+..++++.+..+.+.
T Consensus 201 l~~~~~~~~~~i~~~~l~~l~~~ 223 (353)
T 1sxj_D 201 LRFISEQENVKCDDGVLERILDI 223 (353)
T ss_dssp HHHHHHTTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHH
Confidence 98877655555556666666655
No 50
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.66 E-value=1.6e-16 Score=169.89 Aligned_cols=163 Identities=18% Similarity=0.221 Sum_probs=113.1
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh----------CCceE
Q 010133 197 KHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL----------GYDIY 266 (517)
Q Consensus 197 ~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l----------~~~i~ 266 (517)
..|..|+.|+|.++..+.+++.+.. ..+.++||+||||||||++|+++|+.+ +.+++
T Consensus 174 ~r~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (468)
T 3pxg_A 174 AKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (468)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HhcCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEE
Confidence 4677899999999988777664432 123589999999999999999999997 88899
Q ss_pred EEeeccc---cChHHHHHHHHhcc--CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCC
Q 010133 267 DLELTEV---HNNSELRKLLMKTS--SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDG 341 (517)
Q Consensus 267 ~l~l~~~---~~~~~L~~lf~~~~--~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (517)
.++++.- .....++.+|.... .++||||| .. .
T Consensus 241 ~l~~~~~~~g~~e~~~~~~~~~~~~~~~~iLfiD---~~------~---------------------------------- 277 (468)
T 3pxg_A 241 TLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID---AA------I---------------------------------- 277 (468)
T ss_dssp CC----------CTTHHHHHHHHHTCCCCEEEEC---C------------------------------------------
T ss_pred EeeCCccccchHHHHHHHHHHHHHhcCCeEEEEe---Cc------h----------------------------------
Confidence 9988721 11235667776553 68999999 10 0
Q ss_pred chhhHHHHHHHhhcCCcccCCCceEEEEEeCCCC-----CCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCC----C
Q 010133 342 NNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIE-----KLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGY----E 412 (517)
Q Consensus 342 ~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e-----~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~----~ 412 (517)
...+.|+..|+ .+...+|++||..+ .+|++|.| ||.. |.+++|+.+++..|++.++.. .
T Consensus 278 ---~a~~~L~~~L~------~g~v~vI~at~~~e~~~~~~~~~al~~--Rf~~-i~v~~p~~e~~~~iL~~~~~~~~~~~ 345 (468)
T 3pxg_A 278 ---DASNILKPSLA------RGELQCIGATTLDEYRKYIEKDAALER--RFQP-IQVDQPSVDESIQILQGLRDRYEAHH 345 (468)
T ss_dssp ---------CCCTT------SSSCEEEEECCTTTTHHHHTTCSHHHH--SEEE-EECCCCCHHHHHHHHHHTTTTSGGGS
T ss_pred ---hHHHHHHHhhc------CCCEEEEecCCHHHHHHHhhcCHHHHH--hCcc-ceeCCCCHHHHHHHHHHHHHHHHHhc
Confidence 01122333332 13578999999887 68999999 9984 999999999999999988765 3
Q ss_pred CCCCChHhHHHHHHh
Q 010133 413 ESDLEDETLKELEDV 427 (517)
Q Consensus 413 ~~~~~~~~~~~i~~l 427 (517)
+..+++..+..+..+
T Consensus 346 ~~~i~~~al~~l~~~ 360 (468)
T 3pxg_A 346 RVSITDDAIEAAVKL 360 (468)
T ss_dssp SCSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 334555555555544
No 51
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.65 E-value=2.1e-15 Score=153.05 Aligned_cols=191 Identities=15% Similarity=0.274 Sum_probs=126.1
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeecc
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTE 272 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~ 272 (517)
+.+..+|++++..+..... ...+..++..+ + ....++|||||||||||+|++++|+.+ +.+++.+++..
T Consensus 4 l~~~~~f~~fv~g~~~~~a-~~~~~~~~~~~------~-~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~ 75 (324)
T 1l8q_A 4 LNPKYTLENFIVGEGNRLA-YEVVKEALENL------G-SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD 75 (324)
T ss_dssp CCTTCCSSSCCCCTTTHHH-HHHHHHHHHTT------T-TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCCCCcccCCCCCcHHHH-HHHHHHHHhCc------C-CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH
Confidence 3456689998733322222 23345555442 1 124589999999999999999999999 89999999877
Q ss_pred ccCh--H-----HHHHHHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhh
Q 010133 273 VHNN--S-----ELRKLLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSI 345 (517)
Q Consensus 273 ~~~~--~-----~L~~lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (517)
+... . .+..+......++||||||||.+.. ...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~----------------------------------------~~~ 115 (324)
T 1l8q_A 76 FAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSG----------------------------------------KER 115 (324)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTT----------------------------------------CHH
T ss_pred HHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccC----------------------------------------ChH
Confidence 6211 0 0111122234589999999998720 011
Q ss_pred HHHHHHHhhcCCcccCCCceEEEEEeCCCC---CCChhhhccCCce--eeEeccCCCHHHHHHHHHHhcCCCCCCCChHh
Q 010133 346 TLSGLLNFTDGLWSCCGSEKIFVFTTNHIE---KLDPALLRSGRMD--MHIFMSYCSYPALLILLKNYLGYEESDLEDET 420 (517)
Q Consensus 346 ~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e---~LD~ALlRpGR~d--~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~ 420 (517)
+...|+..++..... +.++|++++|.+. .++++|++ ||+ ..+.+++ +.+++..+++.++...+..++++.
T Consensus 116 ~~~~l~~~l~~~~~~--~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~ 190 (324)
T 1l8q_A 116 TQIEFFHIFNTLYLL--EKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEV 190 (324)
T ss_dssp HHHHHHHHHHHHHHT--TCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHHHHHC--CCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHH
Confidence 233444444433221 2366666777666 68999999 886 7789999 999999999998865555667777
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHH
Q 010133 421 LKELEDVVGKAEMTPADISEVLI 443 (517)
Q Consensus 421 ~~~i~~l~~~~~~spadi~~~l~ 443 (517)
++.|+... -..+++.+.+.
T Consensus 191 l~~l~~~~----g~~r~l~~~l~ 209 (324)
T 1l8q_A 191 IDYLLENT----KNVREIEGKIK 209 (324)
T ss_dssp HHHHHHHC----SSHHHHHHHHH
T ss_pred HHHHHHhC----CCHHHHHHHHH
Confidence 77777763 44566665554
No 52
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.65 E-value=1.7e-15 Score=156.04 Aligned_cols=193 Identities=18% Similarity=0.172 Sum_probs=128.2
Q ss_pred CcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---------CCceEEEeec
Q 010133 201 TFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---------GYDIYDLELT 271 (517)
Q Consensus 201 ~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---------~~~i~~l~l~ 271 (517)
.++.+++.++..+.+...+...+.. ..+++++|+||||||||++++++++.+ +.+++.++|.
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRG---------EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSS---------CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 4478899888877766544433221 234689999999999999999999998 8888889987
Q ss_pred cccCh----------------------HH-HHHHHHh---ccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCC
Q 010133 272 EVHNN----------------------SE-LRKLLMK---TSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYY 325 (517)
Q Consensus 272 ~~~~~----------------------~~-L~~lf~~---~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (517)
...+. .. +..++.. ...++||||||+|.+..
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~----------------------- 144 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPK----------------------- 144 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHH-----------------------
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcc-----------------------
Confidence 64322 12 2222222 23578999999999731
Q ss_pred CcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCC---CCCChhhhccCCcee-eEeccCCCHHHH
Q 010133 326 EPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHI---EKLDPALLRSGRMDM-HIFMSYCSYPAL 401 (517)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~---e~LD~ALlRpGR~d~-~I~~~~p~~e~~ 401 (517)
.......+..+++.++.... +...++|++||.+ +.+++++.+ |+.. .|.|++++.+++
T Consensus 145 --------------~~~~~~~l~~l~~~~~~~~~--~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~ 206 (387)
T 2v1u_A 145 --------------RPGGQDLLYRITRINQELGD--RVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQL 206 (387)
T ss_dssp --------------STTHHHHHHHHHHGGGCC-------CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHH
T ss_pred --------------cCCCChHHHhHhhchhhcCC--CceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHH
Confidence 00133566677776654420 2347889999988 788999999 8876 899999999999
Q ss_pred HHHHHHhcCC--CCCCCChHhHHHHHHhhCCCCCCHHHHHHHHH
Q 010133 402 LILLKNYLGY--EESDLEDETLKELEDVVGKAEMTPADISEVLI 443 (517)
Q Consensus 402 ~~l~~~~l~~--~~~~~~~~~~~~i~~l~~~~~~spadi~~~l~ 443 (517)
..+++.++.. ....++++.++.+.+..+...-.|..+.++|.
T Consensus 207 ~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~ 250 (387)
T 2v1u_A 207 RDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLR 250 (387)
T ss_dssp HHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 9999887642 22334455566666654322234544444443
No 53
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.65 E-value=1.2e-15 Score=165.91 Aligned_cols=160 Identities=23% Similarity=0.219 Sum_probs=110.6
Q ss_pred cccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccChH----
Q 010133 202 FDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNNS---- 277 (517)
Q Consensus 202 f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~~~---- 277 (517)
.++++|.++.++.+.+.+....-... . ....+||+||||||||+|+++||+.++.+++.+++..+....
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~~------~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g 152 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTKS------L-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRG 152 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSSS------C-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC---------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhccc------C-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhh
Confidence 35588888888877554332221111 1 234799999999999999999999999999999988753322
Q ss_pred -----------HHHHHHHhcc-CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhh
Q 010133 278 -----------ELRKLLMKTS-SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSI 345 (517)
Q Consensus 278 -----------~L~~lf~~~~-~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (517)
.+...|..+. ...||||||||.+.. .. ...
T Consensus 153 ~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~---~~-----------------------------------~~~ 194 (543)
T 3m6a_A 153 HRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSS---DF-----------------------------------RGD 194 (543)
T ss_dssp -----------CHHHHHHTTCSSSEEEEEEESSSCC--------------------------------------------
T ss_pred HHHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhh---hh-----------------------------------ccC
Confidence 2334455543 445999999998731 00 111
Q ss_pred HHHHHHHhhcCCccc-----------CCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhc
Q 010133 346 TLSGLLNFTDGLWSC-----------CGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYL 409 (517)
Q Consensus 346 ~ls~LLn~lDg~~s~-----------~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l 409 (517)
..+.||..||..... .-..++||+|||.++.|||+|++ ||+ .|.++.|+.+++..+++.++
T Consensus 195 ~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 195 PSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp ---CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTH
T ss_pred HHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHH
Confidence 345577777653211 01357899999999999999999 996 69999999999999999876
No 54
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.64 E-value=1.5e-15 Score=146.00 Aligned_cols=176 Identities=16% Similarity=0.187 Sum_probs=113.4
Q ss_pred ccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhC---CceEEEeec
Q 010133 195 SFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLG---YDIYDLELT 271 (517)
Q Consensus 195 ~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~---~~i~~l~l~ 271 (517)
.+.++.+|+++++.+ ..+.+++.+..+...+ ..+++||+||||||||++++++|+.+. .+++.+++.
T Consensus 20 ~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~---------~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 20 HLPDDETFTSYYPAA-GNDELIGALKSAASGD---------GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp CCCTTCSTTTSCC---CCHHHHHHHHHHHHTC---------SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCCCCChhhccCCC-CCHHHHHHHHHHHhCC---------CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 345567999999832 2234555566665431 246899999999999999999999874 788888887
Q ss_pred cccChHHHHHHHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHH
Q 010133 272 EVHNNSELRKLLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLL 351 (517)
Q Consensus 272 ~~~~~~~L~~lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 351 (517)
.+... +...+.....+.+|+|||+|.+.. .......|+
T Consensus 90 ~~~~~--~~~~~~~~~~~~vliiDe~~~~~~----------------------------------------~~~~~~~l~ 127 (242)
T 3bos_A 90 IHASI--STALLEGLEQFDLICIDDVDAVAG----------------------------------------HPLWEEAIF 127 (242)
T ss_dssp GGGGS--CGGGGTTGGGSSEEEEETGGGGTT----------------------------------------CHHHHHHHH
T ss_pred HHHHH--HHHHHHhccCCCEEEEeccccccC----------------------------------------CHHHHHHHH
Confidence 76321 223333446789999999998620 011133344
Q ss_pred HhhcCCcccCCCceEEEEEeC-CCC---CCChhhhccCCce--eeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHH
Q 010133 352 NFTDGLWSCCGSEKIFVFTTN-HIE---KLDPALLRSGRMD--MHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELE 425 (517)
Q Consensus 352 n~lDg~~s~~~~~~iiI~TTN-~~e---~LD~ALlRpGR~d--~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~ 425 (517)
..++..... ....+|+||| .++ .+++++.+ |+. ..+.+++|+.+++..++..++...+..++.+.++.+.
T Consensus 128 ~~l~~~~~~--~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 203 (242)
T 3bos_A 128 DLYNRVAEQ--KRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLL 203 (242)
T ss_dssp HHHHHHHHH--CSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHc--CCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 444433221 1222455554 443 45799998 786 8999999999999999988775433334444444444
Q ss_pred H
Q 010133 426 D 426 (517)
Q Consensus 426 ~ 426 (517)
.
T Consensus 204 ~ 204 (242)
T 3bos_A 204 N 204 (242)
T ss_dssp H
T ss_pred H
Confidence 4
No 55
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.64 E-value=3.8e-15 Score=149.88 Aligned_cols=175 Identities=16% Similarity=0.243 Sum_probs=122.8
Q ss_pred CCceecccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh-----CC
Q 010133 189 HPWESVSFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL-----GY 263 (517)
Q Consensus 189 ~~w~~~~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l-----~~ 263 (517)
.+|. ....|.+|++++|.+..++.+.+.+ .. |. .+ .+|||||||||||++++++|+.+ +.
T Consensus 9 ~~~~--~~~~p~~~~~~~g~~~~~~~l~~~l----~~-------~~-~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~ 73 (323)
T 1sxj_B 9 LPWV--EKYRPQVLSDIVGNKETIDRLQQIA----KD-------GN-MP-HMIISGMPGIGKTTSVHCLAHELLGRSYAD 73 (323)
T ss_dssp CCHH--HHTCCSSGGGCCSCTHHHHHHHHHH----HS-------CC-CC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHH
T ss_pred CcHH--HhcCCCCHHHHHCCHHHHHHHHHHH----Hc-------CC-CC-eEEEECcCCCCHHHHHHHHHHHhcCCcccC
Confidence 3563 3467899999999998877665543 22 21 12 39999999999999999999986 45
Q ss_pred ceEEEeeccccChHHHHHHHHhc--------c-CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCC
Q 010133 264 DIYDLELTEVHNNSELRKLLMKT--------S-SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSG 334 (517)
Q Consensus 264 ~i~~l~l~~~~~~~~L~~lf~~~--------~-~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (517)
+++.+++++..+...++.++... . .+.||+|||+|.+.
T Consensus 74 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~--------------------------------- 120 (323)
T 1sxj_B 74 GVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMT--------------------------------- 120 (323)
T ss_dssp HEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSC---------------------------------
T ss_pred CEEEecCccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCC---------------------------------
Confidence 67778877654555565554421 2 37899999999862
Q ss_pred CCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCC
Q 010133 335 SVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEES 414 (517)
Q Consensus 335 ~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~ 414 (517)
......|+..++.. ....++|++||.++.+++++.+ |+. .+.|++|+.+++..++..++...+.
T Consensus 121 ---------~~~~~~L~~~le~~----~~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~ 184 (323)
T 1sxj_B 121 ---------AGAQQALRRTMELY----SNSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDV 184 (323)
T ss_dssp ---------HHHHHTTHHHHHHT----TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred ---------HHHHHHHHHHHhcc----CCCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCC
Confidence 12244455555543 2346788899999999999998 775 8999999999999998877643333
Q ss_pred CCChHhHHHHHHh
Q 010133 415 DLEDETLKELEDV 427 (517)
Q Consensus 415 ~~~~~~~~~i~~l 427 (517)
.++++.+..+.+.
T Consensus 185 ~~~~~~~~~l~~~ 197 (323)
T 1sxj_B 185 KYTNDGLEAIIFT 197 (323)
T ss_dssp CBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 3444444444443
No 56
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.63 E-value=1.2e-14 Score=150.86 Aligned_cols=174 Identities=21% Similarity=0.248 Sum_probs=113.4
Q ss_pred cccCChHHHHHHHHHHHHHHhchhHHH-----------------hhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceE
Q 010133 204 TLAIDPEKKIEIMEDLKDFANGMSFYQ-----------------KTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIY 266 (517)
Q Consensus 204 tv~~~~~~k~~i~~~l~~fl~~~~~y~-----------------~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~ 266 (517)
.|+|.+..|+.|...+........... ......+.++||+||||||||++|+++|+.++.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 478999999998877744333321100 011234568999999999999999999999999999
Q ss_pred EEeeccccC--------hHHHHHHHHhc------cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccC
Q 010133 267 DLELTEVHN--------NSELRKLLMKT------SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCG 332 (517)
Q Consensus 267 ~l~l~~~~~--------~~~L~~lf~~~------~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (517)
.++++.+.. ...+..++... ..++||||||||.+.. .+.
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~---~~~------------------------ 154 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISR---LSE------------------------ 154 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------------------------
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhh---hcC------------------------
Confidence 999988631 22355555443 2679999999999731 110
Q ss_pred CCCCCCCCCchhhHHHHHHHhhcCCcc---c--------------CCCceEEEEEeCC----------------------
Q 010133 333 SGSVGGEDGNNSITLSGLLNFTDGLWS---C--------------CGSEKIFVFTTNH---------------------- 373 (517)
Q Consensus 333 ~~~~~~~~~~~~~~ls~LLn~lDg~~s---~--------------~~~~~iiI~TTN~---------------------- 373 (517)
......+......++.||..||+..- . ...++++|+|||.
T Consensus 155 -~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~ 233 (376)
T 1um8_A 155 -NRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEK 233 (376)
T ss_dssp ----------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSS
T ss_pred -CCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchh
Confidence 00000111223468888999886420 0 0133577888772
Q ss_pred -------------------CCCCChhhhccCCceeeEeccCCCHHHHHHHHHH
Q 010133 374 -------------------IEKLDPALLRSGRMDMHIFMSYCSYPALLILLKN 407 (517)
Q Consensus 374 -------------------~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~ 407 (517)
...+.|+|+. |++..|.|++++.++...++..
T Consensus 234 ~~~~~~~~~~~~~~~~~l~~~~~~p~l~~--R~~~~i~~~~l~~~~l~~i~~~ 284 (376)
T 1um8_A 234 MSKKEQEAILHLVQTHDLVTYGLIPELIG--RLPVLSTLDSISLEAMVDILQK 284 (376)
T ss_dssp CCTTTTTTSGGGCCHHHHHHTTCCHHHHT--TCCEEEECCCCCHHHHHHHHHS
T ss_pred hhccchhHHHhhcCHHHHhhcCCChHHhc--CCCceeeccCCCHHHHHHHHhh
Confidence 1135677777 9999999999999998888864
No 57
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.63 E-value=1.1e-14 Score=149.87 Aligned_cols=172 Identities=19% Similarity=0.277 Sum_probs=123.4
Q ss_pred ccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC-----------
Q 010133 195 SFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY----------- 263 (517)
Q Consensus 195 ~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~----------- 263 (517)
....|.+|++++|.+..++.+...+.. | ..+..|||+||||||||++++++|+.++.
T Consensus 8 ~k~rp~~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 75 (373)
T 1jr3_A 8 RKWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 75 (373)
T ss_dssp HHTCCCSTTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSS
T ss_pred HhhCCCchhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcc
Confidence 346788999999999887776654431 1 12347999999999999999999999864
Q ss_pred -------------ceEEEeeccccChHHHHHHHHhcc------CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCC
Q 010133 264 -------------DIYDLELTEVHNNSELRKLLMKTS------SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNY 324 (517)
Q Consensus 264 -------------~i~~l~l~~~~~~~~L~~lf~~~~------~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (517)
+++.++.........++.++.... .+.||+|||+|.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l------------------------ 131 (373)
T 1jr3_A 76 CDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML------------------------ 131 (373)
T ss_dssp SHHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGS------------------------
T ss_pred cHHHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchh------------------------
Confidence 344444433222334566665432 4689999999986
Q ss_pred CCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHH
Q 010133 325 YEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLIL 404 (517)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l 404 (517)
....++.|+..++.. ....++|++||.+..+++++.+ |+ ..+.+++|+.++...+
T Consensus 132 ------------------~~~~~~~Ll~~le~~----~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~ 186 (373)
T 1jr3_A 132 ------------------SRHSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQ 186 (373)
T ss_dssp ------------------CHHHHHHHHHHHHSC----CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHH
T ss_pred ------------------cHHHHHHHHHHHhcC----CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHH
Confidence 123466777777754 3457889999999999999998 77 7899999999999999
Q ss_pred HHHhcCCCCCCCChHhHHHHHHh
Q 010133 405 LKNYLGYEESDLEDETLKELEDV 427 (517)
Q Consensus 405 ~~~~l~~~~~~~~~~~~~~i~~l 427 (517)
++.++...+..++.+.+..+.+.
T Consensus 187 l~~~~~~~~~~~~~~a~~~l~~~ 209 (373)
T 1jr3_A 187 LEHILNEEHIAHEPRALQLLARA 209 (373)
T ss_dssp HHHHHHHHTCCBCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHH
Confidence 98877544444445555555554
No 58
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.61 E-value=7.7e-15 Score=165.78 Aligned_cols=187 Identities=17% Similarity=0.267 Sum_probs=128.4
Q ss_pred cccCChHHHHHHHHHHHHHHhchhHHHhhCCC----CCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccCh---
Q 010133 204 TLAIDPEKKIEIMEDLKDFANGMSFYQKTGRA----WKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNN--- 276 (517)
Q Consensus 204 tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~----~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~~--- 276 (517)
.|+|.++.++.+...+... ..|.. +..++||+||||||||++|+++|+.++.+++.++|+.+...
T Consensus 459 ~v~g~~~~~~~l~~~i~~~--------~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMA--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHH--------HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hccCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 4677777777665544332 22332 12269999999999999999999999999999999887321
Q ss_pred ----------------HHHHHHHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCC
Q 010133 277 ----------------SELRKLLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGED 340 (517)
Q Consensus 277 ----------------~~L~~lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (517)
..+...+.. ..++||||||||.+
T Consensus 531 ~~l~g~~~g~~g~~~~~~l~~~~~~-~~~~vl~lDEi~~~---------------------------------------- 569 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQGGLLTDAVIK-HPHAVLLLDEIEKA---------------------------------------- 569 (758)
T ss_dssp SSSCCCCSCSHHHHHTTHHHHHHHH-CSSEEEEEETGGGS----------------------------------------
T ss_pred hhhcCCCCCCcCccccchHHHHHHh-CCCcEEEEeCcccc----------------------------------------
Confidence 123333433 35799999999975
Q ss_pred CchhhHHHHHHHhhcCCc-cc-CC-----CceEEEEEeCCCC-------------------------CCChhhhccCCce
Q 010133 341 GNNSITLSGLLNFTDGLW-SC-CG-----SEKIFVFTTNHIE-------------------------KLDPALLRSGRMD 388 (517)
Q Consensus 341 ~~~~~~ls~LLn~lDg~~-s~-~~-----~~~iiI~TTN~~e-------------------------~LD~ALlRpGR~d 388 (517)
....++.||..||.-. .. .| .+.+||+|||... .++|+|+. |||
T Consensus 570 --~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~ 645 (758)
T 1r6b_X 570 --HPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLD 645 (758)
T ss_dssp --CHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCS
T ss_pred --CHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCC
Confidence 2346778888887321 10 01 3468999999753 67899998 999
Q ss_pred eeEeccCCCHHHHHHHHHHhcCCC---------CCCCChHhHHHHHHhhCCCCCCHHHHHHHHH
Q 010133 389 MHIFMSYCSYPALLILLKNYLGYE---------ESDLEDETLKELEDVVGKAEMTPADISEVLI 443 (517)
Q Consensus 389 ~~I~~~~p~~e~~~~l~~~~l~~~---------~~~~~~~~~~~i~~l~~~~~~spadi~~~l~ 443 (517)
..|.|++++.+++..|++.++... ...++++.++.|.+..+..++...++..++.
T Consensus 646 ~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~ 709 (758)
T 1r6b_X 646 NIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQ 709 (758)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHH
T ss_pred cceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHH
Confidence 999999999999999998877421 1123455555555555445555555555444
No 59
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.61 E-value=1.2e-14 Score=154.34 Aligned_cols=189 Identities=17% Similarity=0.273 Sum_probs=123.1
Q ss_pred cCCCCCccccc-CChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh-----CCceEEEe
Q 010133 196 FKHPSTFDTLA-IDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL-----GYDIYDLE 269 (517)
Q Consensus 196 ~~~p~~f~tv~-~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l-----~~~i~~l~ 269 (517)
+.+..+|++++ |..... ....+..+...+ |. ..+++||||||||||+|+++||+++ +.+++.++
T Consensus 98 l~~~~tfd~fv~g~~n~~--a~~~~~~~a~~~------~~--~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSF--AYHAALEVAKHP------GR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp CCTTCSGGGCCCCTTTHH--HHHHHHHHHHST------TS--SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCCCChhhcCCCCchHH--HHHHHHHHHhCC------CC--CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 34455899987 533322 334455555442 21 4589999999999999999999998 88899999
Q ss_pred eccccChHHHH---------HHHHhcc-CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCC
Q 010133 270 LTEVHNNSELR---------KLLMKTS-SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGE 339 (517)
Q Consensus 270 l~~~~~~~~L~---------~lf~~~~-~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (517)
+..+.. .+. .+..... .+.||||||||.+.+
T Consensus 168 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~------------------------------------- 208 (440)
T 2z4s_A 168 SEKFLN--DLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIG------------------------------------- 208 (440)
T ss_dssp HHHHHH--HHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSS-------------------------------------
T ss_pred HHHHHH--HHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccC-------------------------------------
Confidence 877521 121 1222234 789999999998731
Q ss_pred CCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCC---CChhhhccCCce--eeEeccCCCHHHHHHHHHHhcCCCCC
Q 010133 340 DGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEK---LDPALLRSGRMD--MHIFMSYCSYPALLILLKNYLGYEES 414 (517)
Q Consensus 340 ~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~---LD~ALlRpGR~d--~~I~~~~p~~e~~~~l~~~~l~~~~~ 414 (517)
...+...|+..++.+... +.+|||.|.+.+.. ++++|++ ||+ ..+.+++|+.+++..+++.++...+.
T Consensus 209 ---~~~~q~~l~~~l~~l~~~--~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~ 281 (440)
T 2z4s_A 209 ---KTGVQTELFHTFNELHDS--GKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHG 281 (440)
T ss_dssp ---CHHHHHHHHHHHHHHHTT--TCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTC
T ss_pred ---ChHHHHHHHHHHHHHHHC--CCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 012233444444433221 23455544454554 8899999 886 78999999999999999988754444
Q ss_pred CCChHhHHHHHHhhCCCCCCHHHHHHHHH
Q 010133 415 DLEDETLKELEDVVGKAEMTPADISEVLI 443 (517)
Q Consensus 415 ~~~~~~~~~i~~l~~~~~~spadi~~~l~ 443 (517)
.++++.+..|+... +-+++++.++|.
T Consensus 282 ~i~~e~l~~la~~~---~gn~R~l~~~L~ 307 (440)
T 2z4s_A 282 ELPEEVLNFVAENV---DDNLRRLRGAII 307 (440)
T ss_dssp CCCTTHHHHHHHHC---CSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHhc---CCCHHHHHHHHH
Confidence 45566666666652 345666665554
No 60
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.61 E-value=2.6e-14 Score=147.50 Aligned_cols=169 Identities=18% Similarity=0.279 Sum_probs=120.7
Q ss_pred ccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh-----------CCceEEEeec
Q 010133 203 DTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL-----------GYDIYDLELT 271 (517)
Q Consensus 203 ~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l-----------~~~i~~l~l~ 271 (517)
+.+++.++..+.+.+.+..++.. ..+++++|+||||||||++++++++.+ +.+++.++|.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN---------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT---------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 77899999988888777766553 123589999999999999999999998 8999999987
Q ss_pred ccc-ChH-----------------------H-HHHHHHhcc-CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCC
Q 010133 272 EVH-NNS-----------------------E-LRKLLMKTS-SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYY 325 (517)
Q Consensus 272 ~~~-~~~-----------------------~-L~~lf~~~~-~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (517)
... +.. . +..++.... .++||+|||+|.+..
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~----------------------- 147 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVK----------------------- 147 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHH-----------------------
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhcc-----------------------
Confidence 654 221 1 222222222 234999999999731
Q ss_pred CcccccCCCCCCCCCCchhhH-HHHHHHhhcCCcccCCCceEEEEEeCCC---CCCChhhhccCCceeeEeccCCCHHHH
Q 010133 326 EPEMRCGSGSVGGEDGNNSIT-LSGLLNFTDGLWSCCGSEKIFVFTTNHI---EKLDPALLRSGRMDMHIFMSYCSYPAL 401 (517)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~-ls~LLn~lDg~~s~~~~~~iiI~TTN~~---e~LD~ALlRpGR~d~~I~~~~p~~e~~ 401 (517)
...... +..|++.. .+..+|+|||.+ +.+++++.+ ||...|.|++++.+++
T Consensus 148 ---------------~~~~~~~l~~l~~~~--------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~ 202 (384)
T 2qby_B 148 ---------------RRGGDIVLYQLLRSD--------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQL 202 (384)
T ss_dssp ---------------STTSHHHHHHHHTSS--------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHH
T ss_pred ---------------CCCCceeHHHHhcCC--------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHH
Confidence 001123 45555433 347888999987 789999999 9888999999999999
Q ss_pred HHHHHHhcCC--CCCCCChHhHHHHHHhh
Q 010133 402 LILLKNYLGY--EESDLEDETLKELEDVV 428 (517)
Q Consensus 402 ~~l~~~~l~~--~~~~~~~~~~~~i~~l~ 428 (517)
..+++.++.. ....++++.++.+.+..
T Consensus 203 ~~il~~~~~~~~~~~~~~~~~~~~i~~~~ 231 (384)
T 2qby_B 203 KFILSKYAEYGLIKGTYDDEILSYIAAIS 231 (384)
T ss_dssp HHHHHHHHHHTSCTTSCCSHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCCcCHHHHHHHHHHH
Confidence 9999987642 22334455666666654
No 61
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.60 E-value=7.8e-15 Score=149.70 Aligned_cols=154 Identities=19% Similarity=0.241 Sum_probs=99.6
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC-------c-----
Q 010133 197 KHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY-------D----- 264 (517)
Q Consensus 197 ~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~-------~----- 264 (517)
.+|.+|++++|.+..++.+... ... +...++|||||||||||++|+++|+.++. +
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~----~~~---------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~ 84 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLT----AVD---------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPN 84 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHH----HHC---------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSS
T ss_pred CCCCCchhccChHHHHHHHHHH----hhC---------CCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccc
Confidence 4567899999998866543211 111 11246999999999999999999999863 2
Q ss_pred ---------------------eEEEeeccccChHHH------HHHHHhc-----------cCCcEEEEccchhhhccccc
Q 010133 265 ---------------------IYDLELTEVHNNSEL------RKLLMKT-----------SSKSIIVIEDIDCSISLSNR 306 (517)
Q Consensus 265 ---------------------i~~l~l~~~~~~~~L------~~lf~~~-----------~~~sII~iDdID~~~~~~~~ 306 (517)
++.+... .+...+ ...+... ..++||||||||.+-
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~----- 157 (350)
T 1g8p_A 85 VEMIPDWATVLSTNVIRKPTPVVDLPLG--VSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLE----- 157 (350)
T ss_dssp GGGSCTTCCCSCCCEEEECCCEEEECTT--CCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC-----
T ss_pred cccccchhhhhccccccCCCcccccCCC--cchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCC-----
Confidence 1111111 112221 2222221 137899999999861
Q ss_pred cccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCC---cccC------CCceEEEEEeCCCC-C
Q 010133 307 NKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGL---WSCC------GSEKIFVFTTNHIE-K 376 (517)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~---~s~~------~~~~iiI~TTN~~e-~ 376 (517)
...+..|+..++.- .... ....++|+|||..+ .
T Consensus 158 -------------------------------------~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~ 200 (350)
T 1g8p_A 158 -------------------------------------DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGD 200 (350)
T ss_dssp -------------------------------------HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCC
T ss_pred -------------------------------------HHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCC
Confidence 22455666665531 1111 12467889999755 8
Q ss_pred CChhhhccCCceeeEeccCC-CHHHHHHHHHHhc
Q 010133 377 LDPALLRSGRMDMHIFMSYC-SYPALLILLKNYL 409 (517)
Q Consensus 377 LD~ALlRpGR~d~~I~~~~p-~~e~~~~l~~~~l 409 (517)
++++|++ ||+.++.+++| +.+.+..|++..+
T Consensus 201 l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~~ 232 (350)
T 1g8p_A 201 LRPQLLD--RFGLSVEVLSPRDVETRVEVIRRRD 232 (350)
T ss_dssp CCHHHHT--TCSEEEECCCCCSHHHHHHHHHHHH
T ss_pred CCHHHHh--hcceEEEcCCCCcHHHHHHHHHHHH
Confidence 9999999 99999999999 6777778887643
No 62
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.60 E-value=9.3e-14 Score=141.99 Aligned_cols=194 Identities=16% Similarity=0.183 Sum_probs=130.4
Q ss_pred ccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecccc
Q 010133 195 SFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVH 274 (517)
Q Consensus 195 ~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~ 274 (517)
..-.|.+|+.+++.+..++.+ ...+.... ..|.+ +..++|+||||||||||+++||+.++.++...+.....
T Consensus 17 ~~lr~~~l~~~~g~~~~~~~l----~~~i~~~~---~~~~~-~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~ 88 (334)
T 1in4_A 17 QFLRPKSLDEFIGQENVKKKL----SLALEAAK---MRGEV-LDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV 88 (334)
T ss_dssp CTTSCSSGGGCCSCHHHHHHH----HHHHHHHH---HHTCC-CCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCC
T ss_pred HHcCCccHHHccCcHHHHHHH----HHHHHHHH---hcCCC-CCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhc
Confidence 345788999999987665544 33333211 11222 34799999999999999999999999988777766555
Q ss_pred ChHHHHHHHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhh
Q 010133 275 NNSELRKLLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFT 354 (517)
Q Consensus 275 ~~~~L~~lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~l 354 (517)
...++..++.....+.|++|||+|.+.. .....|+..+
T Consensus 89 ~~~~l~~~~~~~~~~~v~~iDE~~~l~~------------------------------------------~~~e~L~~~~ 126 (334)
T 1in4_A 89 KQGDMAAILTSLERGDVLFIDEIHRLNK------------------------------------------AVEELLYSAI 126 (334)
T ss_dssp SHHHHHHHHHHCCTTCEEEEETGGGCCH------------------------------------------HHHHHHHHHH
T ss_pred CHHHHHHHHHHccCCCEEEEcchhhcCH------------------------------------------HHHHHHHHHH
Confidence 5667777776666789999999998631 0111222222
Q ss_pred cCCc------cc--------CCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHh
Q 010133 355 DGLW------SC--------CGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDET 420 (517)
Q Consensus 355 Dg~~------s~--------~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~ 420 (517)
.... .. .-....++.+||.+..|++++++ ||...+.+++++.+++..+++......+...+.+.
T Consensus 127 ~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~ 204 (334)
T 1in4_A 127 EDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAA 204 (334)
T ss_dssp HTSCCCC---------------CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred HhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHH
Confidence 1110 00 00124667799999999999999 99988999999999999999887644444455556
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHH
Q 010133 421 LKELEDVVGKAEMTPADISEVLI 443 (517)
Q Consensus 421 ~~~i~~l~~~~~~spadi~~~l~ 443 (517)
+..|+.. ..-+|+.+.++|.
T Consensus 205 ~~~ia~~---~~G~~R~a~~ll~ 224 (334)
T 1in4_A 205 AEMIAKR---SRGTPRIAIRLTK 224 (334)
T ss_dssp HHHHHHT---STTCHHHHHHHHH
T ss_pred HHHHHHh---cCCChHHHHHHHH
Confidence 6666554 2335555555543
No 63
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.59 E-value=2.1e-14 Score=145.43 Aligned_cols=205 Identities=11% Similarity=0.095 Sum_probs=126.6
Q ss_pred ChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh----------CCceEEEeeccccC--
Q 010133 208 DPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL----------GYDIYDLELTEVHN-- 275 (517)
Q Consensus 208 ~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l----------~~~i~~l~l~~~~~-- 275 (517)
.++..+.|...|...+.. ..+.++|||||||||||++++++++++ ++.++.+||..+.+
T Consensus 25 Re~E~~~i~~~L~~~i~~---------~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~ 95 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMS---------SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMD 95 (318)
T ss_dssp HHHHHHHHHHHHHHHHHT---------TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--H
T ss_pred HHHHHHHHHHHHHHHhcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHH
Confidence 344444444444444432 235689999999999999999999999 45677888876532
Q ss_pred --------------------hHHHHHHHHhc----cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCccccc
Q 010133 276 --------------------NSELRKLLMKT----SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRC 331 (517)
Q Consensus 276 --------------------~~~L~~lf~~~----~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (517)
...|..+|... ..++||+|||||.+.
T Consensus 96 ~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~------------------------------ 145 (318)
T 3te6_A 96 ALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL------------------------------ 145 (318)
T ss_dssp HHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC------------------------------
T ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh------------------------------
Confidence 23466667653 357899999999872
Q ss_pred CCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCC----ChhhhccCCce-eeEeccCCCHHHHHHHHH
Q 010133 332 GSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKL----DPALLRSGRMD-MHIFMSYCSYPALLILLK 406 (517)
Q Consensus 332 ~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~L----D~ALlRpGR~d-~~I~~~~p~~e~~~~l~~ 406 (517)
.+..|..|++...- .....+||+++|..+.. ++++.. ||+ ..|.|++++.++...|++
T Consensus 146 -----------~q~~L~~l~~~~~~----~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~ 208 (318)
T 3te6_A 146 -----------SEKILQYFEKWISS----KNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMII 208 (318)
T ss_dssp -----------CTHHHHHHHHHHHC----SSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHH
T ss_pred -----------cchHHHHHHhcccc----cCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHH
Confidence 12355566654321 23357889999988754 445566 786 579999999999999998
Q ss_pred HhcCCCCCC----------------CChHhHHHHHHhh--CCCCCCHHHHHHHHH---HhcccHHHHHHHHHHHHHHHHH
Q 010133 407 NYLGYEESD----------------LEDETLKELEDVV--GKAEMTPADISEVLI---KNKRDKCKAVRELLETLKVKAE 465 (517)
Q Consensus 407 ~~l~~~~~~----------------~~~~~~~~i~~l~--~~~~~spadi~~~l~---~~~~~~~~al~~l~~~l~~~~~ 465 (517)
..+...... ......+....-+ -...+++.-|.-+.. ....|...|++-+..+.+.+..
T Consensus 209 ~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~ae~ 288 (318)
T 3te6_A 209 TRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEAAVEISKK 288 (318)
T ss_dssp HHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Confidence 876431100 0000000000000 001234444433222 3468999999988888877755
Q ss_pred hhh
Q 010133 466 KNV 468 (517)
Q Consensus 466 ~~~ 468 (517)
+..
T Consensus 289 e~~ 291 (318)
T 3te6_A 289 DFV 291 (318)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 64
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.59 E-value=3e-15 Score=137.84 Aligned_cols=146 Identities=19% Similarity=0.257 Sum_probs=99.1
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh----------CCceE
Q 010133 197 KHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL----------GYDIY 266 (517)
Q Consensus 197 ~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l----------~~~i~ 266 (517)
..|.+|++++|.++..+.+++.+ .. ..++++||+||||||||++++++|+.+ +.+++
T Consensus 16 ~~~~~~~~~~g~~~~~~~l~~~l----~~---------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~ 82 (187)
T 2p65_A 16 ARAGKLDPVIGRDTEIRRAIQIL----SR---------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLV 82 (187)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHH----TS---------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEE
T ss_pred HhccccchhhcchHHHHHHHHHH----hC---------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEE
Confidence 34778999999988766665543 22 224689999999999999999999997 78888
Q ss_pred EEeeccccC--------hHHHHHHHHhc---cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCC
Q 010133 267 DLELTEVHN--------NSELRKLLMKT---SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGS 335 (517)
Q Consensus 267 ~l~l~~~~~--------~~~L~~lf~~~---~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (517)
.+++..+.. ...+..++... ..++||+|||+|.+.. .+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~---~~~--------------------------- 132 (187)
T 2p65_A 83 SLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVG---AGA--------------------------- 132 (187)
T ss_dssp EECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSS---SSS---------------------------
T ss_pred EEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcc---ccc---------------------------
Confidence 888776521 12344444433 4678999999999731 100
Q ss_pred CCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCC-----CCChhhhccCCceeeEeccCCC
Q 010133 336 VGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIE-----KLDPALLRSGRMDMHIFMSYCS 397 (517)
Q Consensus 336 ~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e-----~LD~ALlRpGR~d~~I~~~~p~ 397 (517)
........+..|+..++. ...++|++||.++ .+|++|++ ||+. |++++|+
T Consensus 133 ---~~~~~~~~~~~l~~~~~~------~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 133 ---VAEGALDAGNILKPMLAR------GELRCIGATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp ---SCTTSCCTHHHHHHHHHT------TCSCEEEEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred ---ccccchHHHHHHHHHHhc------CCeeEEEecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 000011223333344432 3467888998775 68999999 9985 9999885
No 65
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.58 E-value=4.1e-14 Score=139.35 Aligned_cols=154 Identities=14% Similarity=0.172 Sum_probs=100.7
Q ss_pred CCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhC---CceEEEeeccccCh
Q 010133 200 STFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLG---YDIYDLELTEVHNN 276 (517)
Q Consensus 200 ~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~---~~i~~l~l~~~~~~ 276 (517)
.+|+.++|.+.....+++.+...... +.++||+||||||||++|+++++.+. .+++.++|+.+. .
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~~-----------~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~-~ 70 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAPL-----------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALN-E 70 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTTS-----------CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSC-H
T ss_pred cccccceeCCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCC-h
Confidence 47899999999988888877766543 35899999999999999999999874 789999999873 2
Q ss_pred HHHH-HHHHh-----------------ccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCC
Q 010133 277 SELR-KLLMK-----------------TSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGG 338 (517)
Q Consensus 277 ~~L~-~lf~~-----------------~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (517)
..+. .+|.. ...+++|||||||.+-
T Consensus 71 ~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~------------------------------------- 113 (265)
T 2bjv_A 71 NLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAP------------------------------------- 113 (265)
T ss_dssp HHHHHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSC-------------------------------------
T ss_pred hHHHHHhcCCcccccccccccccchhhhcCCcEEEEechHhcC-------------------------------------
Confidence 2222 22211 1246899999999861
Q ss_pred CCCchhhHHHHHHHhhcCCc-c------cCCCceEEEEEeCCC-------CCCChhhhccCCce-eeEeccCCCH--HHH
Q 010133 339 EDGNNSITLSGLLNFTDGLW-S------CCGSEKIFVFTTNHI-------EKLDPALLRSGRMD-MHIFMSYCSY--PAL 401 (517)
Q Consensus 339 ~~~~~~~~ls~LLn~lDg~~-s------~~~~~~iiI~TTN~~-------e~LD~ALlRpGR~d-~~I~~~~p~~--e~~ 401 (517)
...+..|+..++... . .......+|+|||.. ..++++|.. ||+ ..|.+++.+. +++
T Consensus 114 -----~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di 186 (265)
T 2bjv_A 114 -----MMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDI 186 (265)
T ss_dssp -----HHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHH
T ss_pred -----HHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHH
Confidence 123455666665210 0 001235788888874 357899998 996 4566666543 666
Q ss_pred HHHHHHhc
Q 010133 402 LILLKNYL 409 (517)
Q Consensus 402 ~~l~~~~l 409 (517)
..+++.++
T Consensus 187 ~~l~~~~l 194 (265)
T 2bjv_A 187 MLMAEYFA 194 (265)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66766665
No 66
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.58 E-value=2.6e-14 Score=146.28 Aligned_cols=172 Identities=16% Similarity=0.229 Sum_probs=113.7
Q ss_pred cccCCCCCcccccCChHHHHHHHHHHHHHH-hchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC---------
Q 010133 194 VSFKHPSTFDTLAIDPEKKIEIMEDLKDFA-NGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY--------- 263 (517)
Q Consensus 194 ~~~~~p~~f~tv~~~~~~k~~i~~~l~~fl-~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~--------- 263 (517)
+...+|.+|+++++.+..++.+.+ ++ .. |. .+. +||+||||||||++++++|+.+..
T Consensus 5 ~~kyrP~~~~~~vg~~~~~~~l~~----~~~~~-------~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~ 71 (354)
T 1sxj_E 5 VDKYRPKSLNALSHNEELTNFLKS----LSDQP-------RD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKID 71 (354)
T ss_dssp TTTTCCCSGGGCCSCHHHHHHHHT----TTTCT-------TC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC----
T ss_pred hhccCCCCHHHhcCCHHHHHHHHH----HHhhC-------CC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEec
Confidence 445789999999998877655433 33 21 22 223 999999999999999999996521
Q ss_pred --------------------ceEEEeeccccCh--HHHHHHHHh----------------ccCCcEEEEccchhhhcccc
Q 010133 264 --------------------DIYDLELTEVHNN--SELRKLLMK----------------TSSKSIIVIEDIDCSISLSN 305 (517)
Q Consensus 264 --------------------~i~~l~l~~~~~~--~~L~~lf~~----------------~~~~sII~iDdID~~~~~~~ 305 (517)
+++.++.+..... ..++.++.. ...+.||+|||+|.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L----- 146 (354)
T 1sxj_E 72 VRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL----- 146 (354)
T ss_dssp --------------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS-----
T ss_pred ceeecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc-----
Confidence 1233333222111 124444432 125669999999984
Q ss_pred ccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccC
Q 010133 306 RNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSG 385 (517)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpG 385 (517)
.......|+..++... .+..+|++||.++.+.+++.+
T Consensus 147 -------------------------------------~~~~~~~L~~~le~~~----~~~~~Il~t~~~~~l~~~l~s-- 183 (354)
T 1sxj_E 147 -------------------------------------TKDAQAALRRTMEKYS----KNIRLIMVCDSMSPIIAPIKS-- 183 (354)
T ss_dssp -------------------------------------CHHHHHHHHHHHHHST----TTEEEEEEESCSCSSCHHHHT--
T ss_pred -------------------------------------CHHHHHHHHHHHHhhc----CCCEEEEEeCCHHHHHHHHHh--
Confidence 1223455666666542 347888999999999999998
Q ss_pred CceeeEeccCCCHHHHHHHHHHhcCCCCCCCC-hHhHHHHHHh
Q 010133 386 RMDMHIFMSYCSYPALLILLKNYLGYEESDLE-DETLKELEDV 427 (517)
Q Consensus 386 R~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~-~~~~~~i~~l 427 (517)
|+ ..+.|++|+.+++..+++..+..++..++ ++.+..|.+.
T Consensus 184 R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~ 225 (354)
T 1sxj_E 184 QC-LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQA 225 (354)
T ss_dssp TS-EEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHH
T ss_pred hc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Confidence 88 78999999999999999887654443344 4445555443
No 67
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.58 E-value=2.1e-14 Score=162.20 Aligned_cols=157 Identities=15% Similarity=0.265 Sum_probs=112.4
Q ss_pred ccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCc-ceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccccCh--
Q 010133 203 DTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKR-GYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVHNN-- 276 (517)
Q Consensus 203 ~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~r-g~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~~~-- 276 (517)
+.|+|.+..++.+.+.+........ . ...+. ++||+||||||||++|+++|+.+ +.+++.++|+.+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~---~--~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~ 565 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLK---D--PKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHS 565 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCS---C--TTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcccC---C--CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccc
Confidence 4678888888887776655432210 0 01122 59999999999999999999998 789999999987532
Q ss_pred ---HHHHHHHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHh
Q 010133 277 ---SELRKLLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNF 353 (517)
Q Consensus 277 ---~~L~~lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~ 353 (517)
..+...+.. ..++||||||||.+ ....++.||..
T Consensus 566 ~~~~~l~~~~~~-~~~~vl~lDEi~~~------------------------------------------~~~~~~~Ll~~ 602 (758)
T 3pxi_A 566 TSGGQLTEKVRR-KPYSVVLLDAIEKA------------------------------------------HPDVFNILLQV 602 (758)
T ss_dssp CC---CHHHHHH-CSSSEEEEECGGGS------------------------------------------CHHHHHHHHHH
T ss_pred cccchhhHHHHh-CCCeEEEEeCcccc------------------------------------------CHHHHHHHHHH
Confidence 233333333 35789999999986 23567778888
Q ss_pred hcCCccc-------CCCceEEEEEeCCCCC------------CChhhhccCCceeeEeccCCCHHHHHHHHHHhc
Q 010133 354 TDGLWSC-------CGSEKIFVFTTNHIEK------------LDPALLRSGRMDMHIFMSYCSYPALLILLKNYL 409 (517)
Q Consensus 354 lDg~~s~-------~~~~~iiI~TTN~~e~------------LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l 409 (517)
||.-.-. ...+.+||+|||.+.. ++|+|+. |||..|.|++|+.+++..|++.++
T Consensus 603 le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 603 LEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp HHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHH
T ss_pred hccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHH
Confidence 8752110 1134689999997554 7899998 999999999999999999998876
No 68
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.57 E-value=6.6e-14 Score=143.13 Aligned_cols=175 Identities=24% Similarity=0.343 Sum_probs=120.3
Q ss_pred CCCceecccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC----
Q 010133 188 GHPWESVSFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY---- 263 (517)
Q Consensus 188 ~~~w~~~~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~---- 263 (517)
..+|. ....|.+|+.++|.+..++.+ ...+.. |.. + +||||||||||||++++++|+.+..
T Consensus 12 ~~~~~--~k~rp~~~~~~~g~~~~~~~L----~~~i~~-------g~~-~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~ 76 (340)
T 1sxj_C 12 NLPWV--EKYRPETLDEVYGQNEVITTV----RKFVDE-------GKL-P-HLLFYGPPGTGKTSTIVALAREIYGKNYS 76 (340)
T ss_dssp CCCHH--HHTCCSSGGGCCSCHHHHHHH----HHHHHT-------TCC-C-CEEEECSSSSSHHHHHHHHHHHHHTTSHH
T ss_pred CCchH--HHhCCCcHHHhcCcHHHHHHH----HHHHhc-------CCC-c-eEEEECCCCCCHHHHHHHHHHHHcCCCcc
Confidence 44673 457899999999987765544 444433 211 1 3999999999999999999999743
Q ss_pred -ceEEEeeccccChHHHHHHHH---hc-----cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCC
Q 010133 264 -DIYDLELTEVHNNSELRKLLM---KT-----SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSG 334 (517)
Q Consensus 264 -~i~~l~l~~~~~~~~L~~lf~---~~-----~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (517)
.+..++.++......++..+. .. ..+.|++|||+|.+.
T Consensus 77 ~~~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~--------------------------------- 123 (340)
T 1sxj_C 77 NMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT--------------------------------- 123 (340)
T ss_dssp HHEEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC---------------------------------
T ss_pred ceEEEEcCcccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC---------------------------------
Confidence 356666655434444544432 21 236899999999861
Q ss_pred CCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCC
Q 010133 335 SVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEES 414 (517)
Q Consensus 335 ~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~ 414 (517)
....+.|+..++... ....+|++||.+..+.|++.+ |+. .+.|.+++.++....+...+...+.
T Consensus 124 ---------~~~~~~L~~~le~~~----~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~ 187 (340)
T 1sxj_C 124 ---------NAAQNALRRVIERYT----KNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKL 187 (340)
T ss_dssp ---------HHHHHHHHHHHHHTT----TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTC
T ss_pred ---------HHHHHHHHHHHhcCC----CCeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCC
Confidence 123456666666542 346778889999999999999 885 7899999999988888877754444
Q ss_pred CCChHhHHHHHH
Q 010133 415 DLEDETLKELED 426 (517)
Q Consensus 415 ~~~~~~~~~i~~ 426 (517)
.+++.....+..
T Consensus 188 ~i~~~~~~~i~~ 199 (340)
T 1sxj_C 188 KLSPNAEKALIE 199 (340)
T ss_dssp CBCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 455554444444
No 69
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.57 E-value=1.1e-13 Score=142.11 Aligned_cols=192 Identities=18% Similarity=0.232 Sum_probs=127.6
Q ss_pred CCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh------CCceEEEeeccc
Q 010133 200 STFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL------GYDIYDLELTEV 273 (517)
Q Consensus 200 ~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l------~~~i~~l~l~~~ 273 (517)
..++.+++.++..+.+.+.+...+.. ..++.++|+||||||||+|++++++.+ +.+++.++|...
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~---------~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYRE---------EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGT---------CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 34578899888877765544332221 224589999999999999999999998 889999987643
Q ss_pred cC----------------------hHH-HHH---HHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCc
Q 010133 274 HN----------------------NSE-LRK---LLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEP 327 (517)
Q Consensus 274 ~~----------------------~~~-L~~---lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (517)
.+ ... +.. .+.....++||+|||+|.+...
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~------------------------ 143 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKK------------------------ 143 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHS------------------------
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhcc------------------------
Confidence 21 122 222 2223335899999999997420
Q ss_pred ccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCC---CCCChhhhccCCce-eeEeccCCCHHHHHH
Q 010133 328 EMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHI---EKLDPALLRSGRMD-MHIFMSYCSYPALLI 403 (517)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~---e~LD~ALlRpGR~d-~~I~~~~p~~e~~~~ 403 (517)
.....+..|+..++.. .+....+|++||.+ +.+++++.+ |+. ..|.+++++.+++..
T Consensus 144 --------------~~~~~l~~l~~~~~~~---~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~ 204 (386)
T 2qby_A 144 --------------YNDDILYKLSRINSEV---NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELED 204 (386)
T ss_dssp --------------SCSTHHHHHHHHHHSC---CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHH
T ss_pred --------------CcCHHHHHHhhchhhc---CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHH
Confidence 0123577788877654 12357888899877 578899988 775 489999999999999
Q ss_pred HHHHhcCC--CCCCCChHhHHHHHHhhCCCCCCHHHHHHHHH
Q 010133 404 LLKNYLGY--EESDLEDETLKELEDVVGKAEMTPADISEVLI 443 (517)
Q Consensus 404 l~~~~l~~--~~~~~~~~~~~~i~~l~~~~~~spadi~~~l~ 443 (517)
++..++.. ....++......+....+...-.|..+..+|.
T Consensus 205 il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~ 246 (386)
T 2qby_A 205 ILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLR 246 (386)
T ss_dssp HHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99876532 12234466666666654322244555555443
No 70
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.56 E-value=1.6e-13 Score=141.51 Aligned_cols=192 Identities=15% Similarity=0.110 Sum_probs=131.2
Q ss_pred CcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh----CCceEEEeeccccCh
Q 010133 201 TFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL----GYDIYDLELTEVHNN 276 (517)
Q Consensus 201 ~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l----~~~i~~l~l~~~~~~ 276 (517)
.++.+++.++..+.+.+.+...+... .+..+.++|+||||||||++++++++.+ +..++.++|....+.
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~-------~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~ 87 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNP-------GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF 87 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHST-------TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCC-------CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCH
Confidence 34789999999888888777665441 1112379999999999999999999999 677888887765432
Q ss_pred HH--------------------------HHHHHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccc
Q 010133 277 SE--------------------------LRKLLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMR 330 (517)
Q Consensus 277 ~~--------------------------L~~lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (517)
.. +...+.....+.||+|||+|.+
T Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l------------------------------ 137 (389)
T 1fnn_A 88 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL------------------------------ 137 (389)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS------------------------------
T ss_pred HHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc------------------------------
Confidence 11 1112222345889999999985
Q ss_pred cCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCC---CCCChhhhccCCcee-eEeccCCCHHHHHHHHH
Q 010133 331 CGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHI---EKLDPALLRSGRMDM-HIFMSYCSYPALLILLK 406 (517)
Q Consensus 331 ~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~---e~LD~ALlRpGR~d~-~I~~~~p~~e~~~~l~~ 406 (517)
....+..|+..++........+..+|++||.+ +.+++.+.+ |+.. .|.|++++.++...+++
T Consensus 138 ------------~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~ 203 (389)
T 1fnn_A 138 ------------APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILL 203 (389)
T ss_dssp ------------CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHH
T ss_pred ------------chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHH
Confidence 12456677777765422001247888899988 788999988 8875 89999999999999988
Q ss_pred HhcCC--CCCCCChHhHHHHHHhhCCC------CCCHHHHHHHHH
Q 010133 407 NYLGY--EESDLEDETLKELEDVVGKA------EMTPADISEVLI 443 (517)
Q Consensus 407 ~~l~~--~~~~~~~~~~~~i~~l~~~~------~~spadi~~~l~ 443 (517)
..+.. ....++++.+..+.+..+.. +-.+..+.+++.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~ 248 (389)
T 1fnn_A 204 DRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILY 248 (389)
T ss_dssp HHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHH
T ss_pred HHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHH
Confidence 77642 11234566677776665322 234555554443
No 71
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.55 E-value=2.9e-14 Score=163.17 Aligned_cols=189 Identities=16% Similarity=0.247 Sum_probs=119.6
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh----------CCceEE
Q 010133 198 HPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL----------GYDIYD 267 (517)
Q Consensus 198 ~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l----------~~~i~~ 267 (517)
.|.+|+.++|.++....+++.+ .+ ..++++||+||||||||++++++|+.+ +.+++.
T Consensus 165 r~~~ld~viGr~~~i~~l~~~l----~~---------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 231 (854)
T 1qvr_A 165 AEGKLDPVIGRDEEIRRVIQIL----LR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS 231 (854)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHH----HC---------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred hcCCCcccCCcHHHHHHHHHHH----hc---------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEE
Confidence 5778999999998777665543 22 224589999999999999999999998 889999
Q ss_pred EeeccccC--------hHHHHHHHHhc---cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCC
Q 010133 268 LELTEVHN--------NSELRKLLMKT---SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSV 336 (517)
Q Consensus 268 l~l~~~~~--------~~~L~~lf~~~---~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (517)
++++.+.. ...+..+|... ..++||||||||.+.+. ..
T Consensus 232 l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~---~~---------------------------- 280 (854)
T 1qvr_A 232 LQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGA---GK---------------------------- 280 (854)
T ss_dssp ECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC---------------------------------------
T ss_pred eehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhcc---CC----------------------------
Confidence 99887742 23466777654 36799999999997421 10
Q ss_pred CCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCC----CCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCC-
Q 010133 337 GGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIE----KLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGY- 411 (517)
Q Consensus 337 ~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e----~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~- 411 (517)
........+.|...++. ++..+|++||.++ .+|++|.| ||+. |.+++|+.+++..+++.++..
T Consensus 281 ---~~g~~~~~~~L~~~l~~------~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~ 348 (854)
T 1qvr_A 281 ---AEGAVDAGNMLKPALAR------GELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKY 348 (854)
T ss_dssp --------------HHHHHT------TCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHH
T ss_pred ---ccchHHHHHHHHHHHhC------CCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhh
Confidence 00001112223333322 3467888888775 47999999 9985 999999999999999865532
Q ss_pred ---CCCCCChHhHHHHHHhhC---CCCCCHHHHHHHH
Q 010133 412 ---EESDLEDETLKELEDVVG---KAEMTPADISEVL 442 (517)
Q Consensus 412 ---~~~~~~~~~~~~i~~l~~---~~~~spadi~~~l 442 (517)
.+..+.+..+..+..+.. ...+.|.....++
T Consensus 349 ~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~ll 385 (854)
T 1qvr_A 349 EVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLI 385 (854)
T ss_dssp HHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHH
T ss_pred hhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHH
Confidence 223344555555555432 4456665555444
No 72
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.55 E-value=7.4e-15 Score=165.98 Aligned_cols=178 Identities=17% Similarity=0.230 Sum_probs=120.5
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh----------CCceE
Q 010133 197 KHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL----------GYDIY 266 (517)
Q Consensus 197 ~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l----------~~~i~ 266 (517)
..|..|+.++|.++.++.+++.+.. +.+.++|||||||||||++|+++|+.+ +.+++
T Consensus 174 ~~~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (758)
T 3pxi_A 174 AKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (758)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HhhCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEE
Confidence 4677899999999988877664432 234589999999999999999999997 88899
Q ss_pred EEeeccc---cChHHHHHHHHhc--cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCC
Q 010133 267 DLELTEV---HNNSELRKLLMKT--SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDG 341 (517)
Q Consensus 267 ~l~l~~~---~~~~~L~~lf~~~--~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (517)
.+++..- .....++.+|..+ ..++||||| .. .
T Consensus 241 ~~~~g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD---~~------~---------------------------------- 277 (758)
T 3pxi_A 241 TLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID---AA------I---------------------------------- 277 (758)
T ss_dssp CC----------CTTHHHHHHHHHTCCCCEEEEC---C------------------------------------------
T ss_pred EecccccccchHHHHHHHHHHHHHhcCCEEEEEc---Cc------h----------------------------------
Confidence 8888211 1233577777655 368999999 10 0
Q ss_pred chhhHHHHHHHhhcCCcccCCCceEEEEEeCCCC-----CCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCC----C
Q 010133 342 NNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIE-----KLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGY----E 412 (517)
Q Consensus 342 ~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e-----~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~----~ 412 (517)
...+.|+..++ .++..+|+|||..+ .+||+|.| ||. .|.|++|+.+++..|++.++.. .
T Consensus 278 ---~~~~~L~~~l~------~~~v~~I~at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~~~~~ 345 (758)
T 3pxi_A 278 ---DASNILKPSLA------RGELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHH 345 (758)
T ss_dssp ---------CCCTT------SSSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGS
T ss_pred ---hHHHHHHHHHh------cCCEEEEeCCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHhc
Confidence 01122333333 23578999999988 69999999 994 5999999999999999987655 2
Q ss_pred CCCCChHhHHHHHHhhC---CCCCCHHHHHHHH
Q 010133 413 ESDLEDETLKELEDVVG---KAEMTPADISEVL 442 (517)
Q Consensus 413 ~~~~~~~~~~~i~~l~~---~~~~spadi~~~l 442 (517)
...+++..+..+..+.. ...+.|.....++
T Consensus 346 ~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll 378 (758)
T 3pxi_A 346 RVSITDDAIEAAVKLSDRYISDRFLPDKAIDLI 378 (758)
T ss_dssp SCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhhcccccCcCCcHHHHHH
Confidence 33455555555555432 3445555444433
No 73
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.53 E-value=4e-14 Score=159.89 Aligned_cols=158 Identities=22% Similarity=0.295 Sum_probs=110.4
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh----------CCceE
Q 010133 197 KHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL----------GYDIY 266 (517)
Q Consensus 197 ~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l----------~~~i~ 266 (517)
..|..|+.++|.++..+.+++.+ .. ..+.++||+||||||||++|+++|+.+ +..++
T Consensus 180 ~~~~~~d~~iGr~~~i~~l~~~l----~~---------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~ 246 (758)
T 1r6b_X 180 ARVGGIDPLIGREKELERAIQVL----CR---------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIY 246 (758)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHH----TS---------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEE
T ss_pred HhcCCCCCccCCHHHHHHHHHHH----hc---------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEE
Confidence 35678999999988877765543 22 235689999999999999999999987 67788
Q ss_pred EEeeccccC--------hHHHHHHHHhcc--CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCC
Q 010133 267 DLELTEVHN--------NSELRKLLMKTS--SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSV 336 (517)
Q Consensus 267 ~l~l~~~~~--------~~~L~~lf~~~~--~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (517)
.+++..+.. ...++.+|.... .++||||||||.+++ ...
T Consensus 247 ~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~---~~~---------------------------- 295 (758)
T 1r6b_X 247 SLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIG---AGA---------------------------- 295 (758)
T ss_dssp ECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTT---SCC----------------------------
T ss_pred EEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhh---cCC----------------------------
Confidence 887766532 346777777654 479999999999752 100
Q ss_pred CCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCC-----CCChhhhccCCceeeEeccCCCHHHHHHHHHHhc
Q 010133 337 GGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIE-----KLDPALLRSGRMDMHIFMSYCSYPALLILLKNYL 409 (517)
Q Consensus 337 ~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e-----~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l 409 (517)
..... .... +.+..+.. .++..+|++||.++ .+|++|.| ||+ .|.++.|+.+++..+++.+.
T Consensus 296 --~~~~~-~~~~---~~L~~~l~--~~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 296 --ASGGQ-VDAA---NLIKPLLS--SGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp --SSSCH-HHHH---HHHSSCSS--SCCCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHH
T ss_pred --CCcch-HHHH---HHHHHHHh--CCCeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHH
Confidence 00111 1222 22322222 23567888888653 57899999 998 69999999999998888654
No 74
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.51 E-value=5e-14 Score=126.44 Aligned_cols=84 Identities=15% Similarity=0.205 Sum_probs=66.6
Q ss_pred cccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccccChHHHH
Q 010133 204 TLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVHNNSELR 280 (517)
Q Consensus 204 tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~~~~~L~ 280 (517)
.++|.++..+++++.+...... ..++||+||||||||++|++|++.. +.+++ ++|+.+.....+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~-----------~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~~~ 69 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSET-----------DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQLN 69 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTC-----------CSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSCHH
T ss_pred CceeCCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchhhh
Confidence 4677888888888777766543 3579999999999999999999987 78999 9999886655566
Q ss_pred HHHHhccCCcEEEEccchhh
Q 010133 281 KLLMKTSSKSIIVIEDIDCS 300 (517)
Q Consensus 281 ~lf~~~~~~sII~iDdID~~ 300 (517)
.+|..+ .+++|||||||.+
T Consensus 70 ~~~~~a-~~g~l~ldei~~l 88 (145)
T 3n70_A 70 DFIALA-QGGTLVLSHPEHL 88 (145)
T ss_dssp HHHHHH-TTSCEEEECGGGS
T ss_pred cHHHHc-CCcEEEEcChHHC
Confidence 666555 4589999999986
No 75
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.50 E-value=2e-13 Score=137.78 Aligned_cols=151 Identities=13% Similarity=0.164 Sum_probs=101.1
Q ss_pred cccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccccChHHHH
Q 010133 204 TLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVHNNSELR 280 (517)
Q Consensus 204 tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~~~~~L~ 280 (517)
.++|.+...+.+++.+...... ..++||+||||||||++|++|++.. +.+++.++|+.+...---.
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~-----------~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPS-----------DATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCST-----------TSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 4678888888888777766432 3589999999999999999999976 6789999999874321112
Q ss_pred HHHHh-----------------ccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCch
Q 010133 281 KLLMK-----------------TSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNN 343 (517)
Q Consensus 281 ~lf~~-----------------~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (517)
.+|.. ...+++|||||||.+.
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~------------------------------------------ 109 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDIS------------------------------------------ 109 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCC------------------------------------------
T ss_pred HhcCccccccCchhhhhcCHHHhcCCCEEEEeccccCC------------------------------------------
Confidence 23321 1235899999999861
Q ss_pred hhHHHHHHHhhcCCc-cc------CCCceEEEEEeCCC-------CCCChhhhccCCce-eeEeccCCC--HHHHHHHHH
Q 010133 344 SITLSGLLNFTDGLW-SC------CGSEKIFVFTTNHI-------EKLDPALLRSGRMD-MHIFMSYCS--YPALLILLK 406 (517)
Q Consensus 344 ~~~ls~LLn~lDg~~-s~------~~~~~iiI~TTN~~-------e~LD~ALlRpGR~d-~~I~~~~p~--~e~~~~l~~ 406 (517)
......||..++... .. ......||+|||.. ..++++|.. ||+ ..|.+|+.+ .+++..|+.
T Consensus 110 ~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~ 187 (304)
T 1ojl_A 110 PLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLAD 187 (304)
T ss_dssp HHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHH
T ss_pred HHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHH
Confidence 224556677665431 00 01236788888875 246677777 774 345666655 566677777
Q ss_pred Hhc
Q 010133 407 NYL 409 (517)
Q Consensus 407 ~~l 409 (517)
.|+
T Consensus 188 ~~l 190 (304)
T 1ojl_A 188 HFL 190 (304)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 76
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.50 E-value=1.3e-13 Score=157.64 Aligned_cols=160 Identities=17% Similarity=0.298 Sum_probs=113.5
Q ss_pred cccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccccChH-
Q 010133 202 FDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVHNNS- 277 (517)
Q Consensus 202 f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~~~~- 277 (517)
++.|+|.++.++.+...+......- ...+. +..++||+||||||||++|++||+.+ +.+++.++|+.+....
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~---~~~~~-p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~ 632 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGL---KDPNR-PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA 632 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGC---SCSSS-CSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhccc---CCCCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhH
Confidence 3567888888777766665443210 00011 11379999999999999999999999 8899999998774321
Q ss_pred ------------------HHHHHHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCC
Q 010133 278 ------------------ELRKLLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGE 339 (517)
Q Consensus 278 ------------------~L~~lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (517)
.+...+.. ..++||||||||.+
T Consensus 633 ~s~l~g~~~~~~G~~~~g~l~~~~~~-~~~~vl~lDEi~~l--------------------------------------- 672 (854)
T 1qvr_A 633 VSRLIGAPPGYVGYEEGGQLTEAVRR-RPYSVILFDEIEKA--------------------------------------- 672 (854)
T ss_dssp GGGC--------------CHHHHHHH-CSSEEEEESSGGGS---------------------------------------
T ss_pred HHHHcCCCCCCcCccccchHHHHHHh-CCCeEEEEeccccc---------------------------------------
Confidence 12222222 34689999999975
Q ss_pred CCchhhHHHHHHHhhcCCccc--C-----CCceEEEEEeCC--------------------------CCCCChhhhccCC
Q 010133 340 DGNNSITLSGLLNFTDGLWSC--C-----GSEKIFVFTTNH--------------------------IEKLDPALLRSGR 386 (517)
Q Consensus 340 ~~~~~~~ls~LLn~lDg~~s~--~-----~~~~iiI~TTN~--------------------------~e~LD~ALlRpGR 386 (517)
....++.||..||.-.-. . -.+.+||+|||. ...+.|+|+. |
T Consensus 673 ---~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--R 747 (854)
T 1qvr_A 673 ---HPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--R 747 (854)
T ss_dssp ---CHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--T
T ss_pred ---CHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--h
Confidence 235678888888743110 0 135789999997 2356788888 9
Q ss_pred ceeeEeccCCCHHHHHHHHHHhcC
Q 010133 387 MDMHIFMSYCSYPALLILLKNYLG 410 (517)
Q Consensus 387 ~d~~I~~~~p~~e~~~~l~~~~l~ 410 (517)
||..|.+.+|+.+++..|+..++.
T Consensus 748 l~~~i~~~pl~~edi~~i~~~~l~ 771 (854)
T 1qvr_A 748 LDEIVVFRPLTKEQIRQIVEIQLS 771 (854)
T ss_dssp CSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred cCeEEeCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999988763
No 77
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.46 E-value=5.4e-12 Score=128.87 Aligned_cols=148 Identities=18% Similarity=0.247 Sum_probs=106.7
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHhCC------------------------ceEEEeec---cccChHHHHHHHHhcc--
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYLGY------------------------DIYDLELT---EVHNNSELRKLLMKTS-- 287 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l~~------------------------~i~~l~l~---~~~~~~~L~~lf~~~~-- 287 (517)
+.+||||||||||||++|+++|+.+.. +++.++.. .-...+.++.++....
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~~~ 103 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEH 103 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTTSC
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHhhc
Confidence 457999999999999999999998853 45555543 2224456777765542
Q ss_pred ----CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCC
Q 010133 288 ----SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGS 363 (517)
Q Consensus 288 ----~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~ 363 (517)
.+.||+|||+|.+ .....+.||..++.- ..
T Consensus 104 ~~~~~~kvviIdead~l------------------------------------------~~~a~naLLk~lEep----~~ 137 (334)
T 1a5t_A 104 ARLGGAKVVWVTDAALL------------------------------------------TDAAANALLKTLEEP----PA 137 (334)
T ss_dssp CTTSSCEEEEESCGGGB------------------------------------------CHHHHHHHHHHHTSC----CT
T ss_pred cccCCcEEEEECchhhc------------------------------------------CHHHHHHHHHHhcCC----CC
Confidence 4689999999986 123467788888764 34
Q ss_pred ceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhhCCCCCCHHHHHHH
Q 010133 364 EKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDVVGKAEMTPADISEV 441 (517)
Q Consensus 364 ~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~~~~~~spadi~~~ 441 (517)
..++|++||.++++.|++++ |+ ..+.|++|+.++...++..... .+++.+..+.++ .+-++..+..+
T Consensus 138 ~~~~Il~t~~~~~l~~ti~S--Rc-~~~~~~~~~~~~~~~~L~~~~~-----~~~~~~~~l~~~---s~G~~r~a~~~ 204 (334)
T 1a5t_A 138 ETWFFLATREPERLLATLRS--RC-RLHYLAPPPEQYAVTWLSREVT-----MSQDALLAALRL---SAGSPGAALAL 204 (334)
T ss_dssp TEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHCC-----CCHHHHHHHHHH---TTTCHHHHHHT
T ss_pred CeEEEEEeCChHhCcHHHhh--cc-eeeeCCCCCHHHHHHHHHHhcC-----CCHHHHHHHHHH---cCCCHHHHHHH
Confidence 57889999999999999998 87 4799999999999988887752 234555555554 23344444433
No 78
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.42 E-value=2.1e-12 Score=138.65 Aligned_cols=126 Identities=17% Similarity=0.192 Sum_probs=84.9
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCC--ceEEEeeccccChHHH-----------HHHHHhc-----cCCcEEEEccchh
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGY--DIYDLELTEVHNNSEL-----------RKLLMKT-----SSKSIIVIEDIDC 299 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~--~i~~l~l~~~~~~~~L-----------~~lf~~~-----~~~sII~iDdID~ 299 (517)
.++||+||||||||+||++||+.++. ++..+++... +.+++ ...|... +.++|||||||+.
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~-t~~dL~G~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r 120 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFS-TPEEVFGPLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWK 120 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTC-CHHHHHCCBC----------CBCCTTSGGGCSEEEEESGGG
T ss_pred CeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcC-CHHHhcCcccHHHHhhchhHHhhhccCCCcceeeeHHhHhh
Confidence 47999999999999999999998853 4555555421 22221 1122211 1457999999987
Q ss_pred hhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhc-------CCcccCCCceEEEEEeC
Q 010133 300 SISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTD-------GLWSCCGSEKIFVFTTN 372 (517)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lD-------g~~s~~~~~~iiI~TTN 372 (517)
+ ...+.+.||..|+ |.... -..+++|+|||
T Consensus 121 ~------------------------------------------~~~~q~~LL~~lee~~v~i~G~~~~-~~~~~iI~ATN 157 (500)
T 3nbx_X 121 A------------------------------------------GPAILNTLLTAINERQFRNGAHVEK-IPMRLLVAASN 157 (500)
T ss_dssp C------------------------------------------CHHHHHHHHHHHHSSEEECSSSEEE-CCCCEEEEEES
T ss_pred h------------------------------------------cHHHHHHHHHHHHHHhccCCCCcCC-cchhhhhhccc
Confidence 5 2346777888875 22111 12357788888
Q ss_pred CCCC---CChhhhccCCceeeEeccCCCH-HHHHHHHHHhc
Q 010133 373 HIEK---LDPALLRSGRMDMHIFMSYCSY-PALLILLKNYL 409 (517)
Q Consensus 373 ~~e~---LD~ALlRpGR~d~~I~~~~p~~-e~~~~l~~~~l 409 (517)
.... +.+||++ ||..+|.+++|+. +++..|++...
T Consensus 158 ~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 158 ELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp SCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred cCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhccc
Confidence 5322 4469999 9999999999986 77888887654
No 79
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.40 E-value=2.1e-13 Score=122.13 Aligned_cols=82 Identities=13% Similarity=0.054 Sum_probs=63.8
Q ss_pred ccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccChHHHHHHHH
Q 010133 205 LAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNNSELRKLLM 284 (517)
Q Consensus 205 v~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~~~~L~~lf~ 284 (517)
++|.++..+++.+.+..+... ..++||+||||||||++|+++++..+ +++.++|+.+.. ..+..+|.
T Consensus 6 ~iG~s~~~~~l~~~~~~~~~~-----------~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~-~~~~~~~~ 72 (143)
T 3co5_A 6 KLGNSAAIQEMNREVEAAAKR-----------TSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLI-DMPMELLQ 72 (143)
T ss_dssp --CCCHHHHHHHHHHHHHHTC-----------SSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHH-HCHHHHHH
T ss_pred ceeCCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCCh-HhhhhHHH
Confidence 577788888888888776543 35799999999999999999999888 999999987632 22455555
Q ss_pred hccCCcEEEEccchhh
Q 010133 285 KTSSKSIIVIEDIDCS 300 (517)
Q Consensus 285 ~~~~~sII~iDdID~~ 300 (517)
.+ .+++|||||||.+
T Consensus 73 ~a-~~~~l~lDei~~l 87 (143)
T 3co5_A 73 KA-EGGVLYVGDIAQY 87 (143)
T ss_dssp HT-TTSEEEEEECTTC
T ss_pred hC-CCCeEEEeChHHC
Confidence 44 4689999999986
No 80
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.35 E-value=7.2e-12 Score=155.49 Aligned_cols=161 Identities=20% Similarity=0.316 Sum_probs=109.2
Q ss_pred CcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHH-HHHHHHhCCceEEEeeccccChHHH
Q 010133 201 TFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMI-AAMANYLGYDIYDLELTEVHNNSEL 279 (517)
Q Consensus 201 ~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla-~alA~~l~~~i~~l~l~~~~~~~~L 279 (517)
+|.+++.+.....+....+...+.. ++++||+||||||||++| +++++..++.++.++++...+...+
T Consensus 1242 ~~~~iiVpT~DT~R~~~ll~~~l~~-----------~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~ 1310 (2695)
T 4akg_A 1242 MRPDIVIPTIDTIKHEKIFYDLLNS-----------KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHI 1310 (2695)
T ss_dssp SCSSCCCCCHHHHHHHHHHHHHHHH-----------TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHH
T ss_pred CccceeEeccchHHHHHHHHHHHHC-----------CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHH
Confidence 5666666555444444444444433 368999999999999999 5566666889999999998877777
Q ss_pred HHHHHhc-----------------cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCc
Q 010133 280 RKLLMKT-----------------SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGN 342 (517)
Q Consensus 280 ~~lf~~~-----------------~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (517)
.+.+... ..++||||||||... .. ..+...
T Consensus 1311 ~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEinmp~----~d-----------------------------~yg~q~ 1357 (2695)
T 4akg_A 1311 LSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPK----LD-----------------------------KYGSQN 1357 (2695)
T ss_dssp HHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTTCSC----CC-----------------------------SSSCCH
T ss_pred HHHHHHHhhhccccCCccccCCCCCceEEEEeccccccc----cc-----------------------------ccCchh
Confidence 7776531 134799999999631 00 000111
Q ss_pred hhhHHHHHHHhhcCCcccCC------CceEEEEEeCCCC-----CCChhhhccCCceeeEeccCCCHHHHHHHHHHhc
Q 010133 343 NSITLSGLLNFTDGLWSCCG------SEKIFVFTTNHIE-----KLDPALLRSGRMDMHIFMSYCSYPALLILLKNYL 409 (517)
Q Consensus 343 ~~~~ls~LLn~lDg~~s~~~------~~~iiI~TTN~~e-----~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l 409 (517)
....+.+++ ...|++.... .+..+|+|||++. .|||+|+| || ..|.+++|+.+++..|+..++
T Consensus 1358 ~lelLRq~l-e~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~vi~i~~P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1358 VVLFLRQLM-EKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-AILYLGYPSGKSLSQIYEIYY 1431 (2695)
T ss_dssp HHHHHHHHH-HTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-EEEECCCCTTTHHHHHHHHHH
T ss_pred HHHHHHHHH-hcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-eEEEeCCCCHHHHHHHHHHHH
Confidence 222333333 2235443211 2367899999995 79999999 99 789999999999999988765
No 81
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.34 E-value=8.5e-12 Score=125.95 Aligned_cols=135 Identities=13% Similarity=0.160 Sum_probs=102.1
Q ss_pred HHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh------CCceEEEeecc-ccChHHHHHHHHhcc
Q 010133 215 IMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL------GYDIYDLELTE-VHNNSELRKLLMKTS 287 (517)
Q Consensus 215 i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l------~~~i~~l~l~~-~~~~~~L~~lf~~~~ 287 (517)
+++.+..+++.. . ...||||||||||||++|+++|+.+ ..+++.++.+. -.+-+.++.++..+.
T Consensus 5 ~~~~L~~~i~~~-------~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~ 75 (305)
T 2gno_A 5 QLETLKRIIEKS-------E--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLN 75 (305)
T ss_dssp HHHHHHHHHHTC-------S--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCC-------C--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHh
Confidence 345555565542 1 2379999999999999999999874 45788888753 234556777765442
Q ss_pred ------CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccC
Q 010133 288 ------SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCC 361 (517)
Q Consensus 288 ------~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~ 361 (517)
..-||+|||+|.+ .....+.||..|+..
T Consensus 76 ~~p~~~~~kvviIdead~l------------------------------------------t~~a~naLLk~LEep---- 109 (305)
T 2gno_A 76 YSPELYTRKYVIVHDCERM------------------------------------------TQQAANAFLKALEEP---- 109 (305)
T ss_dssp SCCSSSSSEEEEETTGGGB------------------------------------------CHHHHHHTHHHHHSC----
T ss_pred hccccCCceEEEeccHHHh------------------------------------------CHHHHHHHHHHHhCC----
Confidence 3579999999986 223467788888764
Q ss_pred CCceEEEEEeCCCCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhc
Q 010133 362 GSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYL 409 (517)
Q Consensus 362 ~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l 409 (517)
....++|++||.+++|.|+++. | .+.|.+|+.++....++..+
T Consensus 110 ~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 110 PEYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp CTTEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred CCCeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 3457888889999999999999 8 89999999999888887765
No 82
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.31 E-value=2.5e-12 Score=119.04 Aligned_cols=94 Identities=18% Similarity=0.349 Sum_probs=69.2
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh----CCceEEEeeccc
Q 010133 198 HPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL----GYDIYDLELTEV 273 (517)
Q Consensus 198 ~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l----~~~i~~l~l~~~ 273 (517)
.+.+|++++...+..+.+++.+..|+.+- .++..++++|+||||||||+|++++|+.+ |..++.+++.++
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~------~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVHNF------NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL 78 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHHSC------CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHHhc------cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 46789999886666677778888887652 23335689999999999999999999987 667777776654
Q ss_pred cChHHHH---------HHHHhccCCcEEEEccchh
Q 010133 274 HNNSELR---------KLLMKTSSKSIIVIEDIDC 299 (517)
Q Consensus 274 ~~~~~L~---------~lf~~~~~~sII~iDdID~ 299 (517)
.. .+. .++.....+.+|+|||++.
T Consensus 79 ~~--~~~~~~~~~~~~~~~~~~~~~~llilDE~~~ 111 (180)
T 3ec2_A 79 IF--RLKHLMDEGKDTKFLKTVLNSPVLVLDDLGS 111 (180)
T ss_dssp HH--HHHHHHHHTCCSHHHHHHHTCSEEEEETCSS
T ss_pred HH--HHHHHhcCchHHHHHHHhcCCCEEEEeCCCC
Confidence 21 111 2333445789999999985
No 83
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.29 E-value=5.8e-13 Score=146.24 Aligned_cols=127 Identities=19% Similarity=0.189 Sum_probs=86.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEEee----ccccChHHHHHHHH----------hccCCcEEEEccchhhhccc
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDLEL----TEVHNNSELRKLLM----------KTSSKSIIVIEDIDCSISLS 304 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l~l----~~~~~~~~L~~lf~----------~~~~~sII~iDdID~~~~~~ 304 (517)
++||+||||||||+||+++|+.++..++.... ..+.. ..+...+. ....++||||||||.+
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~-~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l---- 403 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTA-AVVREKGTGEYYLEAGALVLADGGIAVIDEIDKM---- 403 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEE-ECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCC----
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccc-eeeeccccccccccCCeeEecCCCcEEeehhhhC----
Confidence 79999999999999999999999877665321 11100 00000010 0124689999999986
Q ss_pred cccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCC---------cccCCCceEEEEEeCCCC
Q 010133 305 NRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGL---------WSCCGSEKIFVFTTNHIE 375 (517)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~---------~s~~~~~~iiI~TTN~~e 375 (517)
.....+.|+..|+.- .........||+|||.++
T Consensus 404 --------------------------------------~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~ 445 (595)
T 3f9v_A 404 --------------------------------------RDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKF 445 (595)
T ss_dssp --------------------------------------CSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTT
T ss_pred --------------------------------------CHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcC
Confidence 123456677777632 111223467999999887
Q ss_pred -------------CCChhhhccCCceee-EeccCCCHHHHHHHHHHhcCC
Q 010133 376 -------------KLDPALLRSGRMDMH-IFMSYCSYPALLILLKNYLGY 411 (517)
Q Consensus 376 -------------~LD~ALlRpGR~d~~-I~~~~p~~e~~~~l~~~~l~~ 411 (517)
.|++||++ |||.. +..++|+.+ ...|+++.+..
T Consensus 446 G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 446 GRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp CCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred CccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 89999999 99954 566778877 88888887754
No 84
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.26 E-value=1.6e-10 Score=119.97 Aligned_cols=197 Identities=12% Similarity=0.149 Sum_probs=119.8
Q ss_pred CcccccCChHHHHHHHHHH-HHHHhchhHHHhhCCCCCcceEE--eCCCCCcHHHHHHHHHHHh---------CCceEEE
Q 010133 201 TFDTLAIDPEKKIEIMEDL-KDFANGMSFYQKTGRAWKRGYLL--YGPPGTGKSSMIAAMANYL---------GYDIYDL 268 (517)
Q Consensus 201 ~f~tv~~~~~~k~~i~~~l-~~fl~~~~~y~~~G~~~~rg~LL--~GpPGTGKTsla~alA~~l---------~~~i~~l 268 (517)
..+.+++.++..+.+.+.+ ....... ...++.++| +||||||||+|++++++.+ +..++.+
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~-------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGA-------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSS-------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCC-------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 3467889888888777766 5444320 012357899 9999999999999999877 5567778
Q ss_pred eeccccChH----------------------H----HHHHHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCC
Q 010133 269 ELTEVHNNS----------------------E----LRKLLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNG 322 (517)
Q Consensus 269 ~l~~~~~~~----------------------~----L~~lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~ 322 (517)
+|....+.. . +...+.....+.||+|||+|.+...
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~------------------- 153 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSS------------------- 153 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSC-------------------
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhc-------------------
Confidence 875432211 1 1222222346889999999997310
Q ss_pred CCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCC--CceEEEEEeCCCC---CCC---hhhhccCCceeeEecc
Q 010133 323 NYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCG--SEKIFVFTTNHIE---KLD---PALLRSGRMDMHIFMS 394 (517)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~--~~~iiI~TTN~~e---~LD---~ALlRpGR~d~~I~~~ 394 (517)
.......+..|+..++.... .+ ....+|+|||.++ .++ +.+.+ |+...+.++
T Consensus 154 -----------------~~~~~~~l~~l~~~~~~~~~-~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~ 213 (412)
T 1w5s_A 154 -----------------PRIAAEDLYTLLRVHEEIPS-RDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLP 213 (412)
T ss_dssp -----------------TTSCHHHHHHHHTHHHHSCC-TTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECC
T ss_pred -----------------cCcchHHHHHHHHHHHhccc-CCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeC
Confidence 00123455556555543310 02 3467788887665 344 66777 666669999
Q ss_pred CCCHHHHHHHHHHhcCCC--CCCCChHhHHHHHHhhCCCC---CCHHHHHHHHH
Q 010133 395 YCSYPALLILLKNYLGYE--ESDLEDETLKELEDVVGKAE---MTPADISEVLI 443 (517)
Q Consensus 395 ~p~~e~~~~l~~~~l~~~--~~~~~~~~~~~i~~l~~~~~---~spadi~~~l~ 443 (517)
+++.++...++...+... ....+.+.+..+.+...... =.|..+..++.
T Consensus 214 ~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~ 267 (412)
T 1w5s_A 214 AYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALK 267 (412)
T ss_dssp CCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 999999999987665311 11234556666666543111 34555555543
No 85
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=99.24 E-value=3.5e-12 Score=132.24 Aligned_cols=121 Identities=21% Similarity=0.282 Sum_probs=88.7
Q ss_pred hCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccChHHHHHHHHhccCCcEEEEccchhhhccccccccCC
Q 010133 232 TGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNNSELRKLLMKTSSKSIIVIEDIDCSISLSNRNKRSN 311 (517)
Q Consensus 232 ~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~~~~L~~lf~~~~~~sII~iDdID~~~~~~~~~~~~~ 311 (517)
.+++.++.++|+||||||||||+++||+.++..++.++... ......+......+++++||++..... .+.
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~----~~~~~~lg~~~q~~~~l~dd~~~~~~~--~r~--- 234 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL----DRLNFELGVAIDQFLVVFEDVKGTGGE--SRD--- 234 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT----TTHHHHHGGGTTCSCEEETTCCCSTTT--TTT---
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc----hhHHHHHHHhcchhHHHHHHHHHHHHH--Hhh---
Confidence 58888899999999999999999999999988766543322 122333555567788999999986421 010
Q ss_pred CCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhhhccCCceeeE
Q 010133 312 GSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHI 391 (517)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I 391 (517)
. .......++..+.+.+||. +.++++|||++.+ ++|+||||++..+
T Consensus 235 ---------------------l-----~~~~~~~~~~~l~~~ldG~-------v~v~~~tn~~~~l-~alf~pg~ld~~~ 280 (377)
T 1svm_A 235 ---------------------L-----PSGQGINNLDNLRDYLDGS-------VKVNLEKKHLNKR-TQIFPPGIVTMNE 280 (377)
T ss_dssp ---------------------C-----CCCSHHHHHHTTHHHHHCS-------SCEEECCSSSCCE-EECCCCEEEEECS
T ss_pred ---------------------c-----cccCcchHHHHHHHHhcCC-------CeEeeccCchhhH-HHhhcCcccChhH
Confidence 0 0011122567788889885 4578899999999 8999999999998
Q ss_pred eccC
Q 010133 392 FMSY 395 (517)
Q Consensus 392 ~~~~ 395 (517)
...+
T Consensus 281 ~~l~ 284 (377)
T 1svm_A 281 YSVP 284 (377)
T ss_dssp CCCC
T ss_pred Hhhc
Confidence 8876
No 86
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.17 E-value=6.1e-11 Score=111.48 Aligned_cols=97 Identities=16% Similarity=0.308 Sum_probs=67.6
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCC-CCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccc
Q 010133 198 HPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRA-WKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEV 273 (517)
Q Consensus 198 ~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~-~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~ 273 (517)
.+.+|+++++.+...+.+++.+..|+... +.. .+++++|+||||||||+|++++|+.+ +.+++.+++..+
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 93 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEY------EPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPEL 93 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHC------CSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHh------hhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHH
Confidence 45689999987766666777777777642 111 12689999999999999999999988 678888887654
Q ss_pred cC-------hHHHHHHHHhccCCcEEEEccchhh
Q 010133 274 HN-------NSELRKLLMKTSSKSIIVIEDIDCS 300 (517)
Q Consensus 274 ~~-------~~~L~~lf~~~~~~sII~iDdID~~ 300 (517)
.. ...+..++.....+.+|+||||+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~lilDei~~~ 127 (202)
T 2w58_A 94 FRELKHSLQDQTMNEKLDYIKKVPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHHC---CCCHHHHHHHHHSSEEEEEEECCC
T ss_pred HHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 21 0011222333334579999999864
No 87
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=99.11 E-value=1.6e-10 Score=109.20 Aligned_cols=71 Identities=18% Similarity=0.329 Sum_probs=48.7
Q ss_pred HHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccChHHHHHHHHhccCCcEEEEc
Q 010133 216 MEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNNSELRKLLMKTSSKSIIVIE 295 (517)
Q Consensus 216 ~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~~~~L~~lf~~~~~~sII~iD 295 (517)
+..+..|++ |+|.++++|||||||||||++|.+||+.+...++.+.-+. +. ..+.......||+||
T Consensus 45 ~~~l~~~~~--------~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s~----f~l~~l~~~kIiiLD 110 (212)
T 1tue_A 45 LGALKSFLK--------GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--SH----FWLEPLTDTKVAMLD 110 (212)
T ss_dssp HHHHHHHHH--------TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--SC----GGGGGGTTCSSEEEE
T ss_pred HHHHHHHHh--------cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--ch----hhhcccCCCCEEEEE
Confidence 455666664 4788889999999999999999999999976554321110 10 012233445699999
Q ss_pred cchhh
Q 010133 296 DIDCS 300 (517)
Q Consensus 296 dID~~ 300 (517)
|+|..
T Consensus 111 Ead~~ 115 (212)
T 1tue_A 111 DATTT 115 (212)
T ss_dssp EECHH
T ss_pred CCCch
Confidence 99963
No 88
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.03 E-value=1.1e-09 Score=120.56 Aligned_cols=53 Identities=38% Similarity=0.333 Sum_probs=41.4
Q ss_pred cCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC
Q 010133 196 FKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY 263 (517)
Q Consensus 196 ~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~ 263 (517)
...|..|+.++|.+..++.+ ...+.. ...+||+||||||||+|+++||+.+..
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l----~~~i~~-----------g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVI----KTAANQ-----------KRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHH----HHHHHT-----------TCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred cccccccceEECchhhHhhc----cccccC-----------CCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 45688999999988775444 434433 147999999999999999999998854
No 89
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=99.02 E-value=4.1e-10 Score=113.74 Aligned_cols=97 Identities=22% Similarity=0.404 Sum_probs=64.8
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhC----CceEEEeeccc
Q 010133 198 HPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLG----YDIYDLELTEV 273 (517)
Q Consensus 198 ~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~----~~i~~l~l~~~ 273 (517)
.+.+|+++......+..+++.+..|+... +....++++||||||||||+|+.|+|+++. .+++.++++.+
T Consensus 119 ~~~tfd~f~~~~~~~~~~~~~~~~~i~~~------~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l 192 (308)
T 2qgz_A 119 RHIHLSDIDVNNASRMEAFSAILDFVEQY------PSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSF 192 (308)
T ss_dssp GSCCGGGSCCCSHHHHHHHHHHHHHHHHC------SCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHH
T ss_pred HhCCHhhCcCCChHHHHHHHHHHHHHHhc------cccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHH
Confidence 35789999987655566667777777642 111257999999999999999999998764 78877777643
Q ss_pred c-------ChHHHHHHHHhccCCcEEEEccchhh
Q 010133 274 H-------NNSELRKLLMKTSSKSIIVIEDIDCS 300 (517)
Q Consensus 274 ~-------~~~~L~~lf~~~~~~sII~iDdID~~ 300 (517)
. ....+..++.......+|+||||+..
T Consensus 193 ~~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 193 AIDVKNAISNGSVKEEIDAVKNVPVLILDDIGAE 226 (308)
T ss_dssp HHHHHCCCC----CCTTHHHHTSSEEEEETCCC-
T ss_pred HHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 1 11111122222345679999999753
No 90
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.94 E-value=1e-09 Score=131.36 Aligned_cols=147 Identities=14% Similarity=0.116 Sum_probs=91.9
Q ss_pred CCcccccCChHHHHHHHHHHHHHHhc----------hhHHHh------hC------------CCCCcceEEeCCCCCcHH
Q 010133 200 STFDTLAIDPEKKIEIMEDLKDFANG----------MSFYQK------TG------------RAWKRGYLLYGPPGTGKS 251 (517)
Q Consensus 200 ~~f~tv~~~~~~k~~i~~~l~~fl~~----------~~~y~~------~G------------~~~~rg~LL~GpPGTGKT 251 (517)
.+|+++.+.++.|+++++.+...+.. ++.|+. .| .|..|.+|||||||||||
T Consensus 1017 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GKT 1096 (1706)
T 3cmw_A 1017 SSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKT 1096 (1706)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHH
T ss_pred ceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCChH
Confidence 57999999999999999999988844 345555 23 334444999999999999
Q ss_pred HHHHHHHHHh---CCceEEEeecccc----------------------ChHHHHHHHHh--ccCCcEEEEccchhhhccc
Q 010133 252 SMIAAMANYL---GYDIYDLELTEVH----------------------NNSELRKLLMK--TSSKSIIVIEDIDCSISLS 304 (517)
Q Consensus 252 sla~alA~~l---~~~i~~l~l~~~~----------------------~~~~L~~lf~~--~~~~sII~iDdID~~~~~~ 304 (517)
+||.++|.+. +-+...++..... ++..|+.++.. ...+|+|++|+||++++..
T Consensus 1097 ~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~~~ 1176 (1706)
T 3cmw_A 1097 TLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKA 1176 (1706)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHH
T ss_pred HHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCccc
Confidence 9999998876 4444445443311 24456656643 3479999999999986432
Q ss_pred cccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCC
Q 010133 305 NRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHI 374 (517)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~ 374 (517)
..+. . .++.......+.++++|..|||+.... +++|.+||+.
T Consensus 1177 ~~~g------------------------~-~~~~~~~~~~r~~~q~l~~~~~~~~~~---~v~v~~~n~~ 1218 (1706)
T 3cmw_A 1177 EIEG------------------------E-IGDSHMGLAARMMSQAMRKLAGNLKQS---NTLLIFINQI 1218 (1706)
T ss_dssp HHHS------------------------C-TTCCCTTHHHHHHHHHHHHHHHHHHHT---TCEEEEEECE
T ss_pred cccc------------------------c-cccccccHHHHHHHHHHHHHHhhhccC---CeEEEEeccc
Confidence 2110 0 000011334567999999999975532 3444477765
No 91
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.90 E-value=3.9e-08 Score=101.62 Aligned_cols=151 Identities=17% Similarity=0.286 Sum_probs=97.3
Q ss_pred cccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCc--eEEEeeccccChHHHHH
Q 010133 204 TLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYD--IYDLELTEVHNNSELRK 281 (517)
Q Consensus 204 tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~--i~~l~l~~~~~~~~L~~ 281 (517)
.+++......++.+.+...... ...+|++|++||||+.+|+++....+.. ++.+||..+..+.--..
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~~-----------~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAKS-----------KAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHTS-----------CSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred cccccchHHHHHHhhhhhhhcc-----------chhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 4667777777776666554433 2469999999999999999998887544 99999999855443445
Q ss_pred HHHh-----------------ccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchh
Q 010133 282 LLMK-----------------TSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNS 344 (517)
Q Consensus 282 lf~~-----------------~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (517)
+|.. .....+||||||+.+ ..
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l------------------------------------------~~ 236 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGEL------------------------------------------DQ 236 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTTSEEEEETGGGS------------------------------------------CH
T ss_pred hcCccccccCCcccccCChHhhcCCCeEEecChhhC------------------------------------------CH
Confidence 5422 124579999999987 23
Q ss_pred hHHHHHHHhhcC-CcccCCC------ceEEEEEeCCC-------CCCChhhhccCCcee-eEeccCCCH--HHHHHHHHH
Q 010133 345 ITLSGLLNFTDG-LWSCCGS------EKIFVFTTNHI-------EKLDPALLRSGRMDM-HIFMSYCSY--PALLILLKN 407 (517)
Q Consensus 345 ~~ls~LLn~lDg-~~s~~~~------~~iiI~TTN~~-------e~LD~ALlRpGR~d~-~I~~~~p~~--e~~~~l~~~ 407 (517)
.....||..++. -...-|+ ..-+|+|||.. ..+.+.|.. |+.. .|.+|+... +++..|+..
T Consensus 237 ~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~--rl~~~~i~lPpLreR~~Di~~l~~~ 314 (368)
T 3dzd_A 237 RVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYY--RLSVFQIYLPPLRERGKDVILLAEY 314 (368)
T ss_dssp HHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTSEEEECCCGGGSTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHH--HhCCeEEeCCChhhchhhHHHHHHH
Confidence 445566666642 1111111 23477777742 123344444 4433 577777654 788888877
Q ss_pred hc
Q 010133 408 YL 409 (517)
Q Consensus 408 ~l 409 (517)
|+
T Consensus 315 ~l 316 (368)
T 3dzd_A 315 FL 316 (368)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 92
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.89 E-value=3.8e-09 Score=95.17 Aligned_cols=57 Identities=12% Similarity=0.218 Sum_probs=46.1
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccccChHHHHHHHHhccCCcEEEEccchhh
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVHNNSELRKLLMKTSSKSIIVIEDIDCS 300 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~~~~~L~~lf~~~~~~sII~iDdID~~ 300 (517)
...++|+||+|||||+|++++++.+ |..++.++...+... .-...+.+|+|||++.+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-------~~~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-------DAAFEAEYLAVDQVEKL 95 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-------GGGGGCSEEEEESTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-------HHHhCCCEEEEeCcccc
Confidence 3579999999999999999999988 777888887776443 11346789999999974
No 93
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.84 E-value=3.5e-08 Score=123.67 Aligned_cols=160 Identities=16% Similarity=0.315 Sum_probs=107.4
Q ss_pred CCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHH-HHHHhCCceEEEeeccccChHH
Q 010133 200 STFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAA-MANYLGYDIYDLELTEVHNNSE 278 (517)
Q Consensus 200 ~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~a-lA~~l~~~i~~l~l~~~~~~~~ 278 (517)
.+|.+++.+...-.+....+...+.. .+++||+||||||||++++. +++..+.+++.+++++-.+...
T Consensus 1278 ~~~~~ilVPT~DTvR~~~ll~~ll~~-----------~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~ 1346 (3245)
T 3vkg_A 1278 VASPDVVIPTVDTTRHVDVLHAWLSE-----------HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPEL 1346 (3245)
T ss_dssp TTCTTCCCCCHHHHHHHHHHHHHHHT-----------TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHH
T ss_pred CCcccceecchHHHHHHHHHHHHHHC-----------CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHH
Confidence 35666666555545554555555544 35799999999999988765 4555577889999999888888
Q ss_pred HHHHHHh------c------------cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCC
Q 010133 279 LRKLLMK------T------------SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGED 340 (517)
Q Consensus 279 L~~lf~~------~------------~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (517)
+...+.. . ..++|||||||+.-- . +.
T Consensus 1347 l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDiNmp~-----~-------------------------------D~ 1390 (3245)
T 3vkg_A 1347 LLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEINLPS-----T-------------------------------DK 1390 (3245)
T ss_dssp HHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTTTCCC-----C-------------------------------CT
T ss_pred HHHHHhhcceEEeccCCCcccCCCcCCceEEEEecccCCCC-----c-------------------------------cc
Confidence 8777752 0 123699999999520 0 00
Q ss_pred CchhhHHHHHHHhhc--CCcccCC------CceEEEEEeCCCC-----CCChhhhccCCceeeEeccCCCHHHHHHHHHH
Q 010133 341 GNNSITLSGLLNFTD--GLWSCCG------SEKIFVFTTNHIE-----KLDPALLRSGRMDMHIFMSYCSYPALLILLKN 407 (517)
Q Consensus 341 ~~~~~~ls~LLn~lD--g~~s~~~------~~~iiI~TTN~~e-----~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~ 407 (517)
-..+..+.-|...+| |++.... .+..+|+|.|.+. .|+|+|+| ||- .|.+++|+.++...|+..
T Consensus 1391 yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~-vi~i~~ps~esL~~If~t 1467 (3245)
T 3vkg_A 1391 YGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAP-ILLVDFPSTSSLTQIYGT 1467 (3245)
T ss_dssp TSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCC-EEECCCCCHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hce-EEEeCCCCHHHHHHHHHH
Confidence 112334444545554 2222111 2356888999873 58999999 995 599999999999999776
Q ss_pred hc
Q 010133 408 YL 409 (517)
Q Consensus 408 ~l 409 (517)
++
T Consensus 1468 il 1469 (3245)
T 3vkg_A 1468 FN 1469 (3245)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 94
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.83 E-value=4.5e-07 Score=91.36 Aligned_cols=183 Identities=16% Similarity=0.156 Sum_probs=104.7
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecccc---
Q 010133 198 HPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVH--- 274 (517)
Q Consensus 198 ~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~--- 274 (517)
++..-+.+++.++..+.+.+.+.. | +.++++||+|+|||+|++.+++..+ ++.+++....
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~ 69 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAER 69 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTT
T ss_pred CCCChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccc
Confidence 334446678888776666554332 1 4799999999999999999999886 6666664321
Q ss_pred ---ChH------------------------------------HHHHH---HHhc---cCCcEEEEccchhhhcccccccc
Q 010133 275 ---NNS------------------------------------ELRKL---LMKT---SSKSIIVIEDIDCSISLSNRNKR 309 (517)
Q Consensus 275 ---~~~------------------------------------~L~~l---f~~~---~~~sII~iDdID~~~~~~~~~~~ 309 (517)
+.. .+..+ +... ..|.+|+|||++.+....
T Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~----- 144 (350)
T 2qen_A 70 GHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG----- 144 (350)
T ss_dssp TCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT-----
T ss_pred cCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC-----
Confidence 111 11122 2111 148999999999873100
Q ss_pred CCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCC---------Chh
Q 010133 310 SNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKL---------DPA 380 (517)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~L---------D~A 380 (517)
.......+..|-..++.. .+..+|+|+.....+ ...
T Consensus 145 ------------------------------~~~~~~~~~~L~~~~~~~-----~~~~~il~g~~~~~l~~~l~~~~~~~~ 189 (350)
T 2qen_A 145 ------------------------------SRGGKELLALFAYAYDSL-----PNLKIILTGSEVGLLHDFLKITDYESP 189 (350)
T ss_dssp ------------------------------TTTTHHHHHHHHHHHHHC-----TTEEEEEEESSHHHHHHHHCTTCTTST
T ss_pred ------------------------------ccchhhHHHHHHHHHHhc-----CCeEEEEECCcHHHHHHHHhhcCCCCc
Confidence 000112233332333322 134556665432111 111
Q ss_pred hhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhhCCCCCCHHHHHHHH
Q 010133 381 LLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELEDVVGKAEMTPADISEVL 442 (517)
Q Consensus 381 LlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~~~~~~spadi~~~l 442 (517)
+ .||....+.+++.+.++...++...+...+...+.+....+... .+-.|.-++.++
T Consensus 190 l--~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~---tgG~P~~l~~~~ 246 (350)
T 2qen_A 190 L--YGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVEL---LDGIPGWLVVFG 246 (350)
T ss_dssp T--TTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHH---HTTCHHHHHHHH
T ss_pred c--ccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---hCCCHHHHHHHH
Confidence 2 24776789999999999999988766544433445556565554 233455555443
No 95
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.81 E-value=2e-09 Score=108.45 Aligned_cols=115 Identities=17% Similarity=0.160 Sum_probs=68.7
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEee--cc----cc-C-hHHHHHHHHhcc-CCcEEEEccchhhhcc
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLEL--TE----VH-N-NSELRKLLMKTS-SKSIIVIEDIDCSISL 303 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l--~~----~~-~-~~~L~~lf~~~~-~~sII~iDdID~~~~~ 303 (517)
|++..+.+||+||||||||+|+.++|...+.+++.+++ .+ .. . +..+..++.... .+ +||||+|+.+...
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~-LLVIDsI~aL~~~ 197 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR-VIVIDSLKNVIGA 197 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS-EEEEECCTTTC--
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC-EEEEecccccccc
Confidence 55556678999999999999999999877666555555 11 11 1 222333333322 23 9999999987311
Q ss_pred ccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCCCCChhh
Q 010133 304 SNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIEKLDPAL 381 (517)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e~LD~AL 381 (517)
... ..........+..+|..|+++.... +..+|++|| +...|+++
T Consensus 198 ~~~------------------------------~s~~G~v~~~lrqlL~~L~~~~k~~--gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 198 AGG------------------------------NTTSGGISRGAFDLLSDIGAMAASR--GCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ---------------------------------------CCHHHHHHHHHHHHHHHHH--TCEEEEECC-CSSCSSSH
T ss_pred ccc------------------------------ccccchHHHHHHHHHHHHHHHHhhC--CCEEEEEeC-CcccchhH
Confidence 000 0001112455777777777765432 367888888 56667664
No 96
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.80 E-value=1.6e-07 Score=97.75 Aligned_cols=153 Identities=16% Similarity=0.204 Sum_probs=97.3
Q ss_pred cccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccccChHH
Q 010133 202 FDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVHNNSE 278 (517)
Q Consensus 202 f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~~~~~ 278 (517)
++.+++.....+++.+.+...... ...+||+|++||||+++|++|.... +.+++.+||+.+..+.-
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~-----------~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~ 204 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCA-----------ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIF 204 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTC-----------CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcCC-----------CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHH
Confidence 345667777777777766664433 2468999999999999999998876 46899999998743322
Q ss_pred HHHHHHh-----------------ccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCC
Q 010133 279 LRKLLMK-----------------TSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDG 341 (517)
Q Consensus 279 L~~lf~~-----------------~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (517)
-..+|.. ....++||||||+.+
T Consensus 205 ~~elfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l----------------------------------------- 243 (387)
T 1ny5_A 205 EAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGEL----------------------------------------- 243 (387)
T ss_dssp HHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGC-----------------------------------------
T ss_pred HHHhcCCCCCCCCCcccccCCceeeCCCcEEEEcChhhC-----------------------------------------
Confidence 3344431 123579999999986
Q ss_pred chhhHHHHHHHhhcC-CcccCC------CceEEEEEeCCC-------CCCChhhhccCCce-eeEeccCC--CHHHHHHH
Q 010133 342 NNSITLSGLLNFTDG-LWSCCG------SEKIFVFTTNHI-------EKLDPALLRSGRMD-MHIFMSYC--SYPALLIL 404 (517)
Q Consensus 342 ~~~~~ls~LLn~lDg-~~s~~~------~~~iiI~TTN~~-------e~LD~ALlRpGR~d-~~I~~~~p--~~e~~~~l 404 (517)
....+..||..++. .....| -...||+|||.. ..+.+.|.- |+. ..|.+|+. ..+++..|
T Consensus 244 -~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl~~~~i~lPpLreR~~Di~~l 320 (387)
T 1ny5_A 244 -SLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYY--RLGVIEIEIPPLRERKEDIIPL 320 (387)
T ss_dssp -CHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTTEEEECCCGGGCHHHHHHH
T ss_pred -CHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHH--hhcCCeecCCcchhccccHHHH
Confidence 22345556666542 110001 134578888853 234445544 443 34566665 35788778
Q ss_pred HHHhc
Q 010133 405 LKNYL 409 (517)
Q Consensus 405 ~~~~l 409 (517)
+..|+
T Consensus 321 ~~~~l 325 (387)
T 1ny5_A 321 ANHFL 325 (387)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77776
No 97
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.79 E-value=2.2e-07 Score=93.84 Aligned_cols=57 Identities=21% Similarity=0.135 Sum_probs=43.0
Q ss_pred CCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecc
Q 010133 199 PSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTE 272 (517)
Q Consensus 199 p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~ 272 (517)
+..-+.+++.++..+.+.+ +.. +.++++||+|+|||+|++.+++.++.+++.+++..
T Consensus 9 ~~~~~~~~gR~~el~~L~~-----l~~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 9 KDNRKDFFDREKEIEKLKG-----LRA------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp CCSGGGSCCCHHHHHHHHH-----TCS------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CCCHHHhcChHHHHHHHHH-----hcC------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 3345667887776555433 322 37999999999999999999999988888888764
No 98
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.78 E-value=1.4e-08 Score=95.97 Aligned_cols=119 Identities=13% Similarity=0.143 Sum_probs=76.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH--------hC-CceEEEeeccccC---------------------hHHHHHHHH-hcc
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY--------LG-YDIYDLELTEVHN---------------------NSELRKLLM-KTS 287 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~--------l~-~~i~~l~l~~~~~---------------------~~~L~~lf~-~~~ 287 (517)
-+|++|+||||||++|.+++.. .| .++|..++..+.. ...+..++. ...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPEN 86 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGGG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcccc
Confidence 5899999999999999887543 34 7777776654421 122333321 123
Q ss_pred CCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEE
Q 010133 288 SKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIF 367 (517)
Q Consensus 288 ~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~ii 367 (517)
.++||||||++.++.... . . .+ . ..+|..+..- ...+.-|
T Consensus 87 ~~~vliIDEAq~l~~~~~--~-----------------------------~-~e-~----~rll~~l~~~---r~~~~~i 126 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARS--A-----------------------------G-SK-I----PENVQWLNTH---RHQGIDI 126 (199)
T ss_dssp TTCEEEETTGGGTSBCCC--T-----------------------------T-CC-C----CHHHHGGGGT---TTTTCEE
T ss_pred CceEEEEEChhhhccCcc--c-----------------------------c-ch-h----HHHHHHHHhc---CcCCeEE
Confidence 489999999999752100 0 0 00 0 1244444322 1234677
Q ss_pred EEEeCCCCCCChhhhccCCceeeEeccCCCHH
Q 010133 368 VFTTNHIEKLDPALLRSGRMDMHIFMSYCSYP 399 (517)
Q Consensus 368 I~TTN~~e~LD~ALlRpGR~d~~I~~~~p~~e 399 (517)
|++|+.++.||.+|+. |++.++++..|...
T Consensus 127 il~tq~~~~l~~~lr~--ri~~~~~l~~~~~~ 156 (199)
T 2r2a_A 127 FVLTQGPKLLDQNLRT--LVRKHYHIASNKMG 156 (199)
T ss_dssp EEEESCGGGBCHHHHT--TEEEEEEEEECSSC
T ss_pred EEECCCHHHHhHHHHH--HhheEEEEcCcccC
Confidence 8888889999999888 99999999886443
No 99
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.78 E-value=2.7e-08 Score=124.00 Aligned_cols=124 Identities=17% Similarity=0.163 Sum_probs=94.2
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccChHHHHHHHHhcc-CCcEEEEccchhhhccccccccCCCCCCC
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNNSELRKLLMKTS-SKSIIVIEDIDCSISLSNRNKRSNGSGSR 316 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~~~~L~~lf~~~~-~~sII~iDdID~~~~~~~~~~~~~~~~~~ 316 (517)
.|.+++||||||||++++++|+.+|.+++.++|++-.+...+.++|..+. .++++++|||+.+-
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~--------------- 710 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLD--------------- 710 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTTSSC---------------
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhhhcC---------------
Confidence 58999999999999999999999999999999999888899999998764 57999999999861
Q ss_pred CCCCCCCCCCcccccCCCCCCCCCCchhhHHHHH-------HHhh---------cCCcccCCCceEEEEEeC----CCCC
Q 010133 317 GNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGL-------LNFT---------DGLWSCCGSEKIFVFTTN----HIEK 376 (517)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L-------Ln~l---------Dg~~s~~~~~~iiI~TTN----~~e~ 376 (517)
..+++.+ ++.+ +|-.-.......+++|.| ....
T Consensus 711 ---------------------------~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~e 763 (2695)
T 4akg_A 711 ---------------------------EKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSE 763 (2695)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCC
T ss_pred ---------------------------hHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCccc
Confidence 1233333 2222 111000112235677888 4567
Q ss_pred CChhhhccCCceeeEeccCCCHHHHHHHHH
Q 010133 377 LDPALLRSGRMDMHIFMSYCSYPALLILLK 406 (517)
Q Consensus 377 LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~ 406 (517)
|+++|.+ || +.|.|.+|+.+...++.-
T Consensus 764 LP~~Lk~--~F-r~v~m~~Pd~~~i~ei~l 790 (2695)
T 4akg_A 764 LPENLKK--SF-REFSMKSPQSGTIAEMIL 790 (2695)
T ss_dssp CCHHHHT--TE-EEEECCCCCHHHHHHHHH
T ss_pred ccHHHHh--he-EEEEeeCCCHHHHHHHHH
Confidence 9999998 88 789999999988777643
No 100
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.74 E-value=5.9e-08 Score=95.43 Aligned_cols=59 Identities=20% Similarity=0.262 Sum_probs=41.1
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccChHHHHHHHHhccCCcEEEEccchhh
Q 010133 235 AWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNNSELRKLLMKTSSKSIIVIEDIDCS 300 (517)
Q Consensus 235 ~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~~~~L~~lf~~~~~~sII~iDdID~~ 300 (517)
++++++|||||||||||+|+.|||+.+..- -.++.+. . ...|.....+.|++.||....
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l~-G~vn~~~---~---~f~l~~~~~k~i~l~Ee~~~~ 160 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPFY-GCVNWTN---E---NFPFNDCVDKMVIWWEEGKMT 160 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSCE-EECCTTC---S---SCTTGGGSSCSEEEECSCCEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhccc-ceeeccc---c---ccccccccccEEEEeccccch
Confidence 556789999999999999999999987652 2223221 1 113445567778888887653
No 101
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.42 E-value=1e-06 Score=110.69 Aligned_cols=125 Identities=15% Similarity=0.144 Sum_probs=93.2
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccChHHHHHHHHhcc-CCcEEEEccchhhhccccccccCCCCCCC
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNNSELRKLLMKTS-SKSIIVIEDIDCSISLSNRNKRSNGSGSR 316 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~~~~L~~lf~~~~-~~sII~iDdID~~~~~~~~~~~~~~~~~~ 316 (517)
.|..+.||+|||||.+++++|..+|.+++.++|++-.+...+.++|..+. ..+..++|||+.+
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~~~~GaW~cfDEfNrl---------------- 668 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRL---------------- 668 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHHHTCEEEEETTTSS----------------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhHhhcCcEEEehhhhcC----------------
Confidence 46789999999999999999999999999999999888888888888764 6899999999986
Q ss_pred CCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhc-----------------CCcccCCCceEEEEEeC----CCC
Q 010133 317 GNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTD-----------------GLWSCCGSEKIFVFTTN----HIE 375 (517)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lD-----------------g~~s~~~~~~iiI~TTN----~~e 375 (517)
...++|.+...+. |-.-.-..+..||+|.| ...
T Consensus 669 --------------------------~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~ 722 (3245)
T 3vkg_A 669 --------------------------EERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRS 722 (3245)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCC
T ss_pred --------------------------CHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcc
Confidence 1223333322221 21000112245777888 346
Q ss_pred CCChhhhccCCceeeEeccCCCHHHHHHHHHH
Q 010133 376 KLDPALLRSGRMDMHIFMSYCSYPALLILLKN 407 (517)
Q Consensus 376 ~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~ 407 (517)
.|+++|.. || +.|.|..|+.+.+.++.-.
T Consensus 723 eLP~nLk~--lF-r~v~m~~Pd~~~i~ei~L~ 751 (3245)
T 3vkg_A 723 NLPDNLKK--LF-RSMAMIKPDREMIAQVMLY 751 (3245)
T ss_dssp CSCHHHHT--TE-EEEECCSCCHHHHHHHHHH
T ss_pred cChHHHHh--hc-EEEEEeCCCHHHHHHHHHH
Confidence 78999999 88 6799999999987776543
No 102
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.30 E-value=8.8e-07 Score=107.44 Aligned_cols=114 Identities=13% Similarity=0.181 Sum_probs=71.2
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeecccc---------------------ChHHHHHHHH---h
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVH---------------------NNSELRKLLM---K 285 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~---------------------~~~~L~~lf~---~ 285 (517)
|++.+++++||||||||||+||.++|.+. |..+..++..... ..+.+...+. .
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 47888899999999999999999997765 5566666655321 1112222222 2
Q ss_pred ccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCce
Q 010133 286 TSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEK 365 (517)
Q Consensus 286 ~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~ 365 (517)
...+++||||+|+.++.....+. . .++.......+.++++|..|++..... .
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g------------------------~-~~~~~~~~~~R~lsqlL~~L~~~~~~~---~ 1554 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEG------------------------E-IGDSHMGLAARMMSQAMRKLAGNLKQS---N 1554 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHS------------------------C-TTCCCTTHHHHHHHHHHHHHHHHHHTT---T
T ss_pred cCCCCEEEEcChhHhcccccccc------------------------c-ccccccchHHHHHHHHHHHHHHHHHhC---C
Confidence 36899999999998753211110 0 000001113567899999999886543 3
Q ss_pred EEEEEeCCC
Q 010133 366 IFVFTTNHI 374 (517)
Q Consensus 366 iiI~TTN~~ 374 (517)
++|++||..
T Consensus 1555 v~VI~tNq~ 1563 (2050)
T 3cmu_A 1555 TLLIFINQI 1563 (2050)
T ss_dssp CEEEEEECE
T ss_pred cEEEEEccc
Confidence 556666643
No 103
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.27 E-value=9.7e-07 Score=92.98 Aligned_cols=139 Identities=14% Similarity=0.103 Sum_probs=82.2
Q ss_pred ccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHH-HHHhCCceEEEeeccccChHHHHHH-
Q 010133 205 LAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAM-ANYLGYDIYDLELTEVHNNSELRKL- 282 (517)
Q Consensus 205 v~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~al-A~~l~~~i~~l~l~~~~~~~~L~~l- 282 (517)
|.|.+..|..++-.+ +..... ..-.-++||.|+||| ||+|++++ ++.+...+|..... .+...|...
T Consensus 215 I~G~e~vK~aLll~L---~GG~~k-----~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~--ss~~gLt~s~ 283 (506)
T 3f8t_A 215 LPGAEEVGKMLALQL---FSCVGK-----NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRR--TELTDLTAVL 283 (506)
T ss_dssp STTCHHHHHHHHHHH---TTCCSS-----GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGG--CCHHHHSEEE
T ss_pred cCCCHHHHHHHHHHH---cCCccc-----cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCC--CCccCceEEE
Confidence 667777766663322 222100 111125999999999 99999999 77665555432211 111111100
Q ss_pred -----H------HhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHH
Q 010133 283 -----L------MKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLL 351 (517)
Q Consensus 283 -----f------~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 351 (517)
+ .......|+|||||+.+ ...+++.|+
T Consensus 284 r~~tG~~~~~G~l~LAdgGvl~lDEIn~~------------------------------------------~~~~qsaLl 321 (506)
T 3f8t_A 284 KEDRGWALRAGAAVLADGGILAVDHLEGA------------------------------------------PEPHRWALM 321 (506)
T ss_dssp EESSSEEEEECHHHHTTTSEEEEECCTTC------------------------------------------CHHHHHHHH
T ss_pred EcCCCcccCCCeeEEcCCCeeehHhhhhC------------------------------------------CHHHHHHHH
Confidence 0 01124689999999985 345677888
Q ss_pred Hhhc-------CCcccCCCceEEEEEeCCCC-----------CCChhhhccCCceeeE-eccCCCHHH
Q 010133 352 NFTD-------GLWSCCGSEKIFVFTTNHIE-----------KLDPALLRSGRMDMHI-FMSYCSYPA 400 (517)
Q Consensus 352 n~lD-------g~~s~~~~~~iiI~TTN~~e-----------~LD~ALlRpGR~d~~I-~~~~p~~e~ 400 (517)
..|+ |. .-.....||+|+|..+ .|+++++. |||..+ .+++|+.+.
T Consensus 322 EaMEe~~VtI~G~--~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 322 EAMDKGTVTVDGI--ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGE 385 (506)
T ss_dssp HHHHHSEEEETTE--EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC------
T ss_pred HHHhCCcEEECCE--EcCCCeEEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEecCCCChhH
Confidence 8775 22 1123467899999876 78999999 999865 467776554
No 104
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.23 E-value=7.6e-06 Score=83.11 Aligned_cols=137 Identities=15% Similarity=0.169 Sum_probs=87.9
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHh---CC-ceEEEeeccccChHHHHHHHHhc------cCCcEEEEccchh-hhcccc
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYL---GY-DIYDLELTEVHNNSELRKLLMKT------SSKSIIVIEDIDC-SISLSN 305 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l---~~-~i~~l~l~~~~~~~~L~~lf~~~------~~~sII~iDdID~-~~~~~~ 305 (517)
...||||||+|+||++.+.++++.+ +. +...+... .+.+++.++..+ ..+-||+|||+|. +
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl----- 89 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID---PNTDWNAIFSLCQAMSLFASRQTLLLLLPENGP----- 89 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC---TTCCHHHHHHHHHHHHHCCSCEEEEEECCSSCC-----
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec---CCCCHHHHHHHhcCcCCccCCeEEEEECCCCCC-----
Confidence 3579999999999999999998865 33 22222222 223455554432 3568999999986 4
Q ss_pred ccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcccCCCceEEEEEeCCCC------CCCh
Q 010133 306 RNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWSCCGSEKIFVFTTNHIE------KLDP 379 (517)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~~e------~LD~ 379 (517)
.....+.|+..++... ...++|++|+.++ ++-+
T Consensus 90 -------------------------------------~~~~~~aLl~~le~p~----~~~~~il~~~~~~~~~~~~k~~~ 128 (343)
T 1jr3_D 90 -------------------------------------NAAINEQLLTLTGLLH----DDLLLIVRGNKLSKAQENAAWFT 128 (343)
T ss_dssp -------------------------------------CTTHHHHHHHHHTTCB----TTEEEEEEESCCCTTTTTSHHHH
T ss_pred -------------------------------------ChHHHHHHHHHHhcCC----CCeEEEEEcCCCChhhHhhHHHH
Confidence 1124566777777542 3356666665543 4557
Q ss_pred hhhccCCceeeEeccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHH
Q 010133 380 ALLRSGRMDMHIFMSYCSYPALLILLKNYLGYEESDLEDETLKELE 425 (517)
Q Consensus 380 ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~ 425 (517)
++.. |. ..+.+.+++.++....++..+...+..++.+.+..+.
T Consensus 129 ~i~s--r~-~~~~~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~ 171 (343)
T 1jr3_D 129 ALAN--RS-VQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLC 171 (343)
T ss_dssp HHTT--TC-EEEEECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHH
T ss_pred HHHh--Cc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 7776 54 5789999998888888887765554444444443333
No 105
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.15 E-value=1.1e-05 Score=74.40 Aligned_cols=28 Identities=25% Similarity=0.578 Sum_probs=24.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceE
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIY 266 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~ 266 (517)
-+.|.||+|+|||||++.|++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 3789999999999999999999875443
No 106
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.80 E-value=0.00011 Score=68.84 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=32.9
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeecc
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTE 272 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~ 272 (517)
|++...-++|+||||+|||+|+..+|...+..++.++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 5666667899999999999999999986677777777654
No 107
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.75 E-value=0.00054 Score=74.37 Aligned_cols=63 Identities=13% Similarity=0.072 Sum_probs=39.9
Q ss_pred CCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHH-------hCCceEEEeec
Q 010133 199 PSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANY-------LGYDIYDLELT 271 (517)
Q Consensus 199 p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~-------l~~~i~~l~l~ 271 (517)
|..-..++|.+...+.|.+. +... ..-.+-++++||+|+|||+||..+++. +...++.++++
T Consensus 120 P~~~~~~vGR~~~l~~L~~~----L~~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~ 188 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQK----LSKL-------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVG 188 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHH----HTTS-------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEE
T ss_pred CCCCCeecccHHHHHHHHHH----Hhcc-------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECC
Confidence 33445678887776665443 3321 011356899999999999999998642 22246666665
Q ss_pred c
Q 010133 272 E 272 (517)
Q Consensus 272 ~ 272 (517)
.
T Consensus 189 ~ 189 (591)
T 1z6t_A 189 K 189 (591)
T ss_dssp S
T ss_pred C
Confidence 4
No 108
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.69 E-value=0.00024 Score=75.23 Aligned_cols=66 Identities=23% Similarity=0.233 Sum_probs=40.1
Q ss_pred CceecccCCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CC-ce
Q 010133 190 PWESVSFKHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GY-DI 265 (517)
Q Consensus 190 ~w~~~~~~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~-~i 265 (517)
+| ++...|.+|+.+ .+++++.+ ..+..++... .+.+||.||||||||+++.+++..+ +. .+
T Consensus 13 ~~--~~~~~p~~~~~L--n~~Q~~av-~~~~~~i~~~----------~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~i 77 (459)
T 3upu_A 13 GL--VPRGSHMTFDDL--TEGQKNAF-NIVMKAIKEK----------KHHVTINGPAGTGATTLTKFIIEALISTGETGI 77 (459)
T ss_dssp ----------CCSSCC--CHHHHHHH-HHHHHHHHSS----------SCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCE
T ss_pred CC--ccccCCCccccC--CHHHHHHH-HHHHHHHhcC----------CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceE
Confidence 45 456778888875 55665554 4455555442 1279999999999999999998887 33 45
Q ss_pred EEEee
Q 010133 266 YDLEL 270 (517)
Q Consensus 266 ~~l~l 270 (517)
+.+..
T Consensus 78 l~~a~ 82 (459)
T 3upu_A 78 ILAAP 82 (459)
T ss_dssp EEEES
T ss_pred EEecC
Confidence 54433
No 109
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.67 E-value=2.6e-05 Score=70.94 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=30.1
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCceEEEeec
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELT 271 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~ 271 (517)
+-++|.||||+||||++++||..++.+++.++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 4589999999999999999999999988876654
No 110
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.66 E-value=2.2e-05 Score=71.92 Aligned_cols=32 Identities=28% Similarity=0.390 Sum_probs=28.9
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCceEEEe
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYDLE 269 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~ 269 (517)
+.++|.|||||||||++++||..+++++++.+
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 46999999999999999999999999887653
No 111
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.65 E-value=4.7e-05 Score=70.58 Aligned_cols=62 Identities=8% Similarity=0.106 Sum_probs=37.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeecc--------ccC----------hHHHHHHHHhcc-CCcEEEEcc
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTE--------VHN----------NSELRKLLMKTS-SKSIIVIED 296 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~--------~~~----------~~~L~~lf~~~~-~~sII~iDd 296 (517)
-++++||||+|||+++..++..+ +..++.+.... +.+ ...+..++.... ...+|+|||
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~~~~dvviIDE 84 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIEEDTRGVFIDE 84 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCCTTEEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhcCCCCEEEEEC
Confidence 47899999999999997776553 66655442210 000 011223333333 457999999
Q ss_pred chhh
Q 010133 297 IDCS 300 (517)
Q Consensus 297 ID~~ 300 (517)
|..+
T Consensus 85 ~Q~~ 88 (184)
T 2orw_A 85 VQFF 88 (184)
T ss_dssp GGGS
T ss_pred cccC
Confidence 9875
No 112
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.65 E-value=0.00011 Score=75.27 Aligned_cols=69 Identities=12% Similarity=0.212 Sum_probs=46.8
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccccC---------------------hHHHHHHHH---h
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVHN---------------------NSELRKLLM---K 285 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~~---------------------~~~L~~lf~---~ 285 (517)
|++..+-++|+||||+|||+|+..+|..+ +..++.++...... ...+..++. .
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 56666679999999999999999998775 56676666543211 112212222 2
Q ss_pred ccCCcEEEEccchhhh
Q 010133 286 TSSKSIIVIEDIDCSI 301 (517)
Q Consensus 286 ~~~~sII~iDdID~~~ 301 (517)
...+.+|+||.|..++
T Consensus 137 ~~~~dlvVIDSi~~l~ 152 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALV 152 (356)
T ss_dssp TSCCSEEEEECTTTCC
T ss_pred hcCCCeEEehHhhhhc
Confidence 2467899999998764
No 113
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.62 E-value=5.1e-05 Score=76.68 Aligned_cols=40 Identities=13% Similarity=0.188 Sum_probs=32.3
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHh---------CCceEEEeecc
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYL---------GYDIYDLELTE 272 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l---------~~~i~~l~l~~ 272 (517)
|++...-++|+||||+|||+|+..+|... +..++.++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 66767779999999999999999998875 45667776554
No 114
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.61 E-value=0.00086 Score=78.66 Aligned_cols=64 Identities=16% Similarity=0.103 Sum_probs=42.3
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh-------CCceEEEee
Q 010133 198 HPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL-------GYDIYDLEL 270 (517)
Q Consensus 198 ~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l-------~~~i~~l~l 270 (517)
.|.....++|.++..++|.+.+. ... .-.+-+.|+|++|.|||+||+.+++.. ...++.+++
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~----~~~-------~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~ 187 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLW----KLN-------GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSI 187 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHH----TTT-------TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEEC
T ss_pred CCCCCceeccHHHHHHHHHHHHh----hcc-------CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEE
Confidence 45556678898888766655442 110 113458899999999999999987652 223556666
Q ss_pred cc
Q 010133 271 TE 272 (517)
Q Consensus 271 ~~ 272 (517)
+.
T Consensus 188 ~~ 189 (1249)
T 3sfz_A 188 GK 189 (1249)
T ss_dssp CS
T ss_pred CC
Confidence 55
No 115
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.59 E-value=5.9e-05 Score=67.86 Aligned_cols=32 Identities=28% Similarity=0.252 Sum_probs=28.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEEee
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDLEL 270 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l~l 270 (517)
-++|.||||+||||+++.||..++++++..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~ 34 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSS 34 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCcc
Confidence 47899999999999999999999998876653
No 116
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.59 E-value=3.5e-05 Score=71.94 Aligned_cols=32 Identities=31% Similarity=0.400 Sum_probs=28.5
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCceEEEe
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYDLE 269 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~ 269 (517)
+.++|.|||||||||++++||..+++++++.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 46999999999999999999999999887543
No 117
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.58 E-value=0.0003 Score=66.17 Aligned_cols=37 Identities=24% Similarity=0.153 Sum_probs=28.5
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEe
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLE 269 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~ 269 (517)
|++...-++|+||||+|||+|++.+|..+ +..++.++
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45555668999999999999999998654 45555554
No 118
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.57 E-value=3.4e-05 Score=70.96 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=28.6
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHHhCCceEE
Q 010133 235 AWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYD 267 (517)
Q Consensus 235 ~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~ 267 (517)
+.+.-++|.|+||+||||+++.||..++++++.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 344568999999999999999999999987765
No 119
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.47 E-value=5.1e-05 Score=69.04 Aligned_cols=30 Identities=30% Similarity=0.408 Sum_probs=27.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEE
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDL 268 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l 268 (517)
.++|.|||||||||++++||..+++++++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 489999999999999999999999887653
No 120
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.46 E-value=5.8e-05 Score=68.94 Aligned_cols=31 Identities=29% Similarity=0.518 Sum_probs=27.7
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCceEEE
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYDL 268 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i~~l 268 (517)
+.++|+||||+||||+++++|..+++.++.+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 4699999999999999999999999877654
No 121
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.45 E-value=0.00017 Score=73.43 Aligned_cols=40 Identities=18% Similarity=0.124 Sum_probs=31.6
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHh---------CCceEEEeecc
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYL---------GYDIYDLELTE 272 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l---------~~~i~~l~l~~ 272 (517)
|++...-++|+||||+|||+|+..+|... +..++.++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 66666678999999999999999998873 45666666544
No 122
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.44 E-value=6.9e-05 Score=68.63 Aligned_cols=31 Identities=35% Similarity=0.581 Sum_probs=27.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEEe
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDLE 269 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l~ 269 (517)
-++|.|+|||||||+++.||..+|+++++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 4899999999999999999999999877543
No 123
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.43 E-value=6.7e-05 Score=67.69 Aligned_cols=32 Identities=28% Similarity=0.445 Sum_probs=28.7
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCceEEEe
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYDLE 269 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~ 269 (517)
..++|.|+|||||||+++.||..+|+++++.+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 36899999999999999999999999987643
No 124
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.42 E-value=0.00026 Score=86.27 Aligned_cols=69 Identities=17% Similarity=0.307 Sum_probs=52.0
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccccCh------------------------HHHHHHHHh
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVHNN------------------------SELRKLLMK 285 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~~~------------------------~~L~~lf~~ 285 (517)
|++..+.+||+||||||||+|+.+++.+. |.+++.+++...... ..+...+..
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 57888889999999999999999986543 778888877764221 122333444
Q ss_pred ccCCcEEEEccchhhh
Q 010133 286 TSSKSIIVIEDIDCSI 301 (517)
Q Consensus 286 ~~~~sII~iDdID~~~ 301 (517)
...+.+|+||++..+.
T Consensus 1157 ~~~~dlvVIDsl~~L~ 1172 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALT 1172 (2050)
T ss_dssp HTCCSEEEESCGGGCC
T ss_pred hCCCCEEEECCccccc
Confidence 5679999999999874
No 125
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.41 E-value=0.00031 Score=72.27 Aligned_cols=69 Identities=16% Similarity=0.278 Sum_probs=47.9
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeecccc---------------------ChHHHHHHHHh---
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVH---------------------NNSELRKLLMK--- 285 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~---------------------~~~~L~~lf~~--- 285 (517)
|++..+-++|+||||+|||+|+..+|..+ +.+++.+++.... +...+...+..
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 66767779999999999999999987664 5677777654321 11222223322
Q ss_pred ccCCcEEEEccchhhh
Q 010133 286 TSSKSIIVIEDIDCSI 301 (517)
Q Consensus 286 ~~~~sII~iDdID~~~ 301 (517)
...+.+||||.+..+.
T Consensus 150 ~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALT 165 (366)
T ss_dssp TTCCSEEEEECTTTCC
T ss_pred cCCCCEEEEeChHHhc
Confidence 2467899999999874
No 126
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.40 E-value=0.00011 Score=66.49 Aligned_cols=30 Identities=40% Similarity=0.707 Sum_probs=26.5
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCceEE
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYD 267 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i~~ 267 (517)
.-+.|.|||||||||+++.||+.++.++++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 358999999999999999999999976554
No 127
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.40 E-value=7.5e-05 Score=68.79 Aligned_cols=31 Identities=35% Similarity=0.589 Sum_probs=26.8
Q ss_pred cceEEeCCCCCcHHHHHHHHHHH-hCCceEEE
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANY-LGYDIYDL 268 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~-l~~~i~~l 268 (517)
..++|+|+|||||||+++.||.. +|++++++
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 45899999999999999999999 78776654
No 128
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.38 E-value=0.0001 Score=71.81 Aligned_cols=32 Identities=31% Similarity=0.562 Sum_probs=28.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEEee
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDLEL 270 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l~l 270 (517)
-++|.|||||||||++++||..+++.++..|-
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999988876654
No 129
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.34 E-value=9.1e-05 Score=66.84 Aligned_cols=30 Identities=27% Similarity=0.511 Sum_probs=27.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEE
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDL 268 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l 268 (517)
-++|.|+|||||||+++.||..+++++++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 589999999999999999999999887653
No 130
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.34 E-value=0.00027 Score=70.10 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=28.3
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHhCCceEEEee
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLEL 270 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l 270 (517)
+.-++|.||||+||||++++|+..++..++.++.
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 4568999999999999999999998555566664
No 131
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.33 E-value=0.00035 Score=71.37 Aligned_cols=69 Identities=17% Similarity=0.273 Sum_probs=47.0
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccccC---------------------hHHHHHHHH---h
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVHN---------------------NSELRKLLM---K 285 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~~---------------------~~~L~~lf~---~ 285 (517)
|++..+-++|+||||+|||+|+..+|..+ +..++.++...... ...+..++. .
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 56666779999999999999999997654 56666666543211 112222222 2
Q ss_pred ccCCcEEEEccchhhh
Q 010133 286 TSSKSIIVIEDIDCSI 301 (517)
Q Consensus 286 ~~~~sII~iDdID~~~ 301 (517)
...+.+||||++..++
T Consensus 137 ~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 137 SGALDIIVIDSVAALV 152 (349)
T ss_dssp TTCCSEEEEECGGGCC
T ss_pred cCCCCEEEEcChHhhc
Confidence 2468999999999874
No 132
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.31 E-value=0.00013 Score=67.94 Aligned_cols=30 Identities=37% Similarity=0.604 Sum_probs=27.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEE
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDL 268 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l 268 (517)
-++|.|||||||||+++.||..++++++.+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 588999999999999999999999887654
No 133
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.30 E-value=0.00043 Score=70.92 Aligned_cols=69 Identities=14% Similarity=0.258 Sum_probs=49.0
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeecccc---------------------ChHHHHHHHHh---
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEVH---------------------NNSELRKLLMK--- 285 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~~---------------------~~~~L~~lf~~--- 285 (517)
|++..+-++|+||||+|||+|+..+|..+ +..++.+++.... +...+..++..
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 67777789999999999999999988764 6677777763311 11223333322
Q ss_pred ccCCcEEEEccchhhh
Q 010133 286 TSSKSIIVIEDIDCSI 301 (517)
Q Consensus 286 ~~~~sII~iDdID~~~ 301 (517)
...+.+||||.+..+.
T Consensus 139 ~~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 139 SGAVDVIVVDSVAALT 154 (356)
T ss_dssp HTCCSEEEEECGGGCC
T ss_pred ccCCCEEEEcCHHHhc
Confidence 3467899999999874
No 134
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.30 E-value=0.0001 Score=66.02 Aligned_cols=29 Identities=28% Similarity=0.439 Sum_probs=25.6
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEE
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDL 268 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l 268 (517)
-++|.||||+||||+++.| ..+|++++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4789999999999999999 8889887653
No 135
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.29 E-value=0.00035 Score=71.30 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=26.5
Q ss_pred hCCCCCcceEEeCCCCCcHHHHHHHHHHHh
Q 010133 232 TGRAWKRGYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 232 ~G~~~~rg~LL~GpPGTGKTsla~alA~~l 261 (517)
.|++...-++|+||||+|||+|+..+|...
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 367767779999999999999999999887
No 136
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.29 E-value=0.00011 Score=67.27 Aligned_cols=30 Identities=27% Similarity=0.473 Sum_probs=26.5
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCceEE
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYD 267 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i~~ 267 (517)
.-++|.|+|||||||+++.||..++++++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 358999999999999999999999987654
No 137
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.27 E-value=0.00014 Score=65.40 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=26.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCCceEEE
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGYDIYDL 268 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~~i~~l 268 (517)
++|.|+||+||||+++.||..+++++++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 78999999999999999999999887754
No 138
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.25 E-value=0.00021 Score=71.83 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=24.6
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHH
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~ 260 (517)
|++...-++|+||||+|||+|+..+|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6666677999999999999999999875
No 139
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.25 E-value=0.00017 Score=67.12 Aligned_cols=31 Identities=32% Similarity=0.469 Sum_probs=27.1
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCceEEE
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYDL 268 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i~~l 268 (517)
+-++|.||||+||||+++.||..+++.++..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 4699999999999999999999998776553
No 140
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.25 E-value=0.00011 Score=67.14 Aligned_cols=30 Identities=30% Similarity=0.668 Sum_probs=26.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEE
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDL 268 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l 268 (517)
-++|.|||||||||+++.||..++++++..
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 488999999999999999999999766543
No 141
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.25 E-value=0.00032 Score=68.02 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=30.2
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccc
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEV 273 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~ 273 (517)
+.-++|.||||+||||+++.|+..++..++.++...+
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 4568999999999999999999999866666655443
No 142
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.21 E-value=0.00091 Score=65.66 Aligned_cols=29 Identities=24% Similarity=0.221 Sum_probs=24.4
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHh
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l 261 (517)
|++...-++|+||||+|||+|+..+|..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 55555679999999999999999998754
No 143
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.21 E-value=0.00015 Score=66.63 Aligned_cols=31 Identities=23% Similarity=0.434 Sum_probs=27.5
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCceEEE
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYDL 268 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i~~l 268 (517)
.-++|.|||||||||+++.||..+++++++.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 3589999999999999999999999876654
No 144
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.21 E-value=0.00015 Score=66.27 Aligned_cols=32 Identities=22% Similarity=0.402 Sum_probs=27.8
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHhCCceEEE
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYLGYDIYDL 268 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l 268 (517)
++-++|.|+|||||||+++.||..++++++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 34689999999999999999999999776654
No 145
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.19 E-value=0.00016 Score=67.91 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=26.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCCceEEE
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGYDIYDL 268 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~~i~~l 268 (517)
++|.||||+||||+++.||..++++++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 78999999999999999999999877654
No 146
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.19 E-value=0.00019 Score=65.54 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=22.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~ 262 (517)
-++|.||||+||||+++.||..++
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999987
No 147
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.18 E-value=0.00016 Score=66.77 Aligned_cols=31 Identities=19% Similarity=0.451 Sum_probs=27.1
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCceEEE
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYDL 268 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i~~l 268 (517)
.-++|.||||+||||+++.||..++++++..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 3589999999999999999999999766544
No 148
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.18 E-value=0.00018 Score=67.52 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=26.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCCceEEE
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGYDIYDL 268 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~~i~~l 268 (517)
++|.||||+||||+++.||..++++++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 78999999999999999999999877654
No 149
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.16 E-value=0.002 Score=61.62 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=28.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeecc
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTE 272 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~ 272 (517)
.+++.|+||+|||+++.++|..+ |+++..+++..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 58999999999999999998776 78887776643
No 150
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.16 E-value=0.00076 Score=67.70 Aligned_cols=68 Identities=15% Similarity=0.085 Sum_probs=43.2
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHh-----CCceEEEeecccc---------------------ChHHH-HHHHH-
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYL-----GYDIYDLELTEVH---------------------NNSEL-RKLLM- 284 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l-----~~~i~~l~l~~~~---------------------~~~~L-~~lf~- 284 (517)
|+|.. -++++||||||||+|+..++..+ +..+..++...-. +.+.+ ..+..
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 56655 47999999999999987765443 4556666544311 11222 22221
Q ss_pred ----hccCCcEEEEccchhhh
Q 010133 285 ----KTSSKSIIVIEDIDCSI 301 (517)
Q Consensus 285 ----~~~~~sII~iDdID~~~ 301 (517)
....+.+|+||-|.++.
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCB
T ss_pred HHHhhccCceEEEEecccccc
Confidence 22368999999999874
No 151
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.15 E-value=0.00019 Score=67.81 Aligned_cols=30 Identities=23% Similarity=0.432 Sum_probs=26.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEE
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDL 268 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l 268 (517)
-++|.||||+||||+++.||..++++++..
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 588999999999999999999999876553
No 152
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.15 E-value=0.00016 Score=68.71 Aligned_cols=31 Identities=16% Similarity=0.355 Sum_probs=27.2
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCceEEE
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYDL 268 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i~~l 268 (517)
.-++|.|||||||||+++.||..+++.++..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 4589999999999999999999999776543
No 153
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.15 E-value=0.013 Score=63.20 Aligned_cols=44 Identities=18% Similarity=0.179 Sum_probs=32.7
Q ss_pred cCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHH
Q 010133 206 AIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMAN 259 (517)
Q Consensus 206 ~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~ 259 (517)
+|.++.+++|.+.+..- +-.-.+-+.++|++|.|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 38888888877766321 011235688999999999999999997
No 154
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.14 E-value=0.00017 Score=65.31 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=22.3
Q ss_pred cceEEeCCCCCcHHHHHHHHHH-HhCC
Q 010133 238 RGYLLYGPPGTGKSSMIAAMAN-YLGY 263 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~-~l~~ 263 (517)
.-++|.||||+||||+++.|+. .+++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~ 29 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGF 29 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCc
Confidence 3589999999999999999998 4553
No 155
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.14 E-value=0.00017 Score=68.18 Aligned_cols=30 Identities=23% Similarity=0.444 Sum_probs=26.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEE
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDL 268 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l 268 (517)
-++|.|+|||||||+++.||..++++++..
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 488999999999999999999999877654
No 156
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.13 E-value=0.0023 Score=59.73 Aligned_cols=109 Identities=9% Similarity=0.142 Sum_probs=70.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccc--c-Ch-----------------------------HHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEV--H-NN-----------------------------SELRKLL 283 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~--~-~~-----------------------------~~L~~lf 283 (517)
-+++|+++|+||||+|.++|-.. |+.++.+....- . ++ ......+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 57899999999999999997655 888888843321 0 00 1111112
Q ss_pred ----Hhc--cCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCC
Q 010133 284 ----MKT--SSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGL 357 (517)
Q Consensus 284 ----~~~--~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~ 357 (517)
... ....+|+||||-..+.+ .-.....++..+..-
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~---------------------------------------g~l~~~ev~~~l~~R 150 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAY---------------------------------------DYLPLEEVISALNAR 150 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHT---------------------------------------TSSCHHHHHHHHHTS
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccC---------------------------------------CCCCHHHHHHHHHhC
Confidence 222 35689999999765321 112344466655532
Q ss_pred cccCCCceEEEEEeCCCCCCChhhhccCCceeeEeccC
Q 010133 358 WSCCGSEKIFVFTTNHIEKLDPALLRSGRMDMHIFMSY 395 (517)
Q Consensus 358 ~s~~~~~~iiI~TTN~~e~LD~ALlRpGR~d~~I~~~~ 395 (517)
....-||+|+|.+ +++|+- .-|.+-+|..
T Consensus 151 ----p~~~~vIlTGr~a---p~~l~e--~AD~VTem~~ 179 (196)
T 1g5t_A 151 ----PGHQTVIITGRGC---HRDILD--LADTVSELRP 179 (196)
T ss_dssp ----CTTCEEEEECSSC---CHHHHH--HCSEEEECCC
T ss_pred ----cCCCEEEEECCCC---cHHHHH--hCcceeeecc
Confidence 3456789999875 889988 7888777754
No 157
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.13 E-value=0.00019 Score=65.88 Aligned_cols=35 Identities=34% Similarity=0.434 Sum_probs=27.0
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHHhCCceEEEe
Q 010133 235 AWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLE 269 (517)
Q Consensus 235 ~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~ 269 (517)
+...-+.|.||||+||||+++.||+.++...+.++
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~ 41 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFH 41 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEc
Confidence 33446899999999999999999987665544443
No 158
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.11 E-value=0.00031 Score=63.60 Aligned_cols=29 Identities=34% Similarity=0.535 Sum_probs=25.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEE
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYD 267 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~ 267 (517)
-++|.||||+||||+++.|++.+|..++.
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 58899999999999999999998865543
No 159
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.11 E-value=0.00021 Score=65.04 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=22.6
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCceE
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIY 266 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i~ 266 (517)
.-++|.|+|||||||+++.||..++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 35889999999999999999999999876
No 160
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.09 E-value=0.00022 Score=66.23 Aligned_cols=30 Identities=17% Similarity=0.328 Sum_probs=26.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEE
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDL 268 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l 268 (517)
-++|.|+|||||||+++.||..+++++++.
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 588999999999999999999999766554
No 161
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.09 E-value=0.00044 Score=62.99 Aligned_cols=32 Identities=34% Similarity=0.597 Sum_probs=28.5
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHh---CCceEEEe
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLE 269 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~ 269 (517)
.-+.|.|++|+||||+++.|+..+ |++++.++
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d 40 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 40 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence 347899999999999999999998 88888776
No 162
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.07 E-value=0.00044 Score=63.27 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=27.4
Q ss_pred eEEeCCCCCcHHHHHHHHHHHh---CCceEEEe
Q 010133 240 YLLYGPPGTGKSSMIAAMANYL---GYDIYDLE 269 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l---~~~i~~l~ 269 (517)
+.|.|+|||||||+++.||..+ |++++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 7899999999999999999998 88888765
No 163
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.05 E-value=0.00019 Score=67.89 Aligned_cols=30 Identities=13% Similarity=0.235 Sum_probs=26.5
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCceEE
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYD 267 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i~~ 267 (517)
.-++|.||||+||||+++.||..++..++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 468999999999999999999999976544
No 164
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.05 E-value=0.00039 Score=66.45 Aligned_cols=30 Identities=27% Similarity=0.422 Sum_probs=26.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEE
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDL 268 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l 268 (517)
.++|.|+|||||||+++.||..+++.++..
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 589999999999999999999999776654
No 165
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.03 E-value=0.00099 Score=72.54 Aligned_cols=32 Identities=38% Similarity=0.490 Sum_probs=26.0
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHh---CCceEEEe
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLE 269 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~ 269 (517)
+.+++.||||||||+++.+++..+ +..+..+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 368999999999999999998765 66666553
No 166
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.02 E-value=0.00047 Score=64.18 Aligned_cols=29 Identities=24% Similarity=0.500 Sum_probs=24.9
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCceE
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIY 266 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i~ 266 (517)
.-+.|.||||+||||++++||+.+|..++
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 35889999999999999999999975443
No 167
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.01 E-value=0.00028 Score=66.39 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=26.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCCceEEE
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGYDIYDL 268 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~~i~~l 268 (517)
++|.||||+||||+++.||..++++++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 78999999999999999999999877654
No 168
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.99 E-value=0.00048 Score=65.60 Aligned_cols=31 Identities=16% Similarity=0.385 Sum_probs=26.6
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHHHhCCceE
Q 010133 236 WKRGYLLYGPPGTGKSSMIAAMANYLGYDIY 266 (517)
Q Consensus 236 ~~rg~LL~GpPGTGKTsla~alA~~l~~~i~ 266 (517)
.++-++|.||||+||+|.|+.||..+|++.+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 3456889999999999999999999986543
No 169
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.98 E-value=0.00039 Score=70.13 Aligned_cols=32 Identities=25% Similarity=0.547 Sum_probs=29.2
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCceEEEe
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYDLE 269 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~ 269 (517)
+.++|.||||||||+++.+||..++..++.+|
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~D 37 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVD 37 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEecc
Confidence 46899999999999999999999998888775
No 170
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.96 E-value=0.00039 Score=67.12 Aligned_cols=31 Identities=23% Similarity=0.427 Sum_probs=27.2
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCceEEE
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYDL 268 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i~~l 268 (517)
.-++|.||||+||||+++.|+..+++.++..
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 4589999999999999999999998776654
No 171
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.94 E-value=0.0013 Score=68.37 Aligned_cols=28 Identities=29% Similarity=0.220 Sum_probs=23.4
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHH
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~ 260 (517)
|++...-++|+||||||||+|+..+|-.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 6666667999999999999999977643
No 172
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.94 E-value=0.00053 Score=65.13 Aligned_cols=28 Identities=21% Similarity=0.459 Sum_probs=25.1
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCCceEE
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGYDIYD 267 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~~i~~ 267 (517)
++|.||||+||||+++.||..++++++.
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i~ 30 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIE 30 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 7899999999999999999999876544
No 173
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.92 E-value=0.00057 Score=64.45 Aligned_cols=29 Identities=34% Similarity=0.602 Sum_probs=26.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEE
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYD 267 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~ 267 (517)
-+.|.|||||||||+++.||+.+|+++++
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 48899999999999999999999976654
No 174
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.91 E-value=0.00055 Score=63.15 Aligned_cols=27 Identities=37% Similarity=0.829 Sum_probs=24.9
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCCceE
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGYDIY 266 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~~i~ 266 (517)
+.|.|+|||||||+++.||..++..++
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 789999999999999999999998655
No 175
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.90 E-value=0.00065 Score=65.34 Aligned_cols=30 Identities=27% Similarity=0.584 Sum_probs=26.2
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCceEE
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYD 267 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i~~ 267 (517)
.-+.|.||||+||||+++.||..+|+..+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 468999999999999999999999876543
No 176
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.89 E-value=0.00075 Score=61.98 Aligned_cols=30 Identities=33% Similarity=0.481 Sum_probs=26.1
Q ss_pred eEEeCCCCCcHHHHHHHHHHHh---CCceEEEe
Q 010133 240 YLLYGPPGTGKSSMIAAMANYL---GYDIYDLE 269 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l---~~~i~~l~ 269 (517)
+.|.|||||||||+++.|+..+ |++++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 6799999999999999999999 99887553
No 177
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.89 E-value=0.001 Score=61.74 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=23.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCc
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYD 264 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~ 264 (517)
-++|.|+|||||||+++.||..++..
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 48899999999999999999999874
No 178
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.88 E-value=0.00064 Score=64.13 Aligned_cols=27 Identities=30% Similarity=0.603 Sum_probs=24.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCCceE
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGYDIY 266 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~~i~ 266 (517)
++|.||||+||+|.|+.||..+|++.+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~i 29 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHI 29 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEE
Confidence 688999999999999999999987654
No 179
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.86 E-value=0.00039 Score=64.58 Aligned_cols=30 Identities=30% Similarity=0.395 Sum_probs=26.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEEe
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDLE 269 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l~ 269 (517)
-+.|.|||||||||+++.||+ +|+++++.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 378999999999999999999 887776654
No 180
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.86 E-value=0.0027 Score=60.63 Aligned_cols=62 Identities=15% Similarity=0.227 Sum_probs=40.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeecc-------cc-------------ChHHHHHHHHhc---cCCcEE
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTE-------VH-------------NNSELRKLLMKT---SSKSII 292 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~-------~~-------------~~~~L~~lf~~~---~~~sII 292 (517)
-++++||||+|||+++..+|..+ +..++.+.... +. ...++...+... ..+.+|
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvV 93 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVI 93 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEE
Confidence 36789999999999998887665 66777663211 10 112333333332 247899
Q ss_pred EEccchhh
Q 010133 293 VIEDIDCS 300 (517)
Q Consensus 293 ~iDdID~~ 300 (517)
+|||+..+
T Consensus 94 iIDEaQ~l 101 (223)
T 2b8t_A 94 GIDEVQFF 101 (223)
T ss_dssp EECSGGGS
T ss_pred EEecCccC
Confidence 99999865
No 181
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.85 E-value=0.00039 Score=63.53 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=22.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~ 262 (517)
-++|.|||||||||+++.||..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999886
No 182
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.84 E-value=0.00059 Score=63.14 Aligned_cols=32 Identities=16% Similarity=0.194 Sum_probs=27.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh-CCceEEEee
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL-GYDIYDLEL 270 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l-~~~i~~l~l 270 (517)
-+.|.||||+||||+++.||..+ |++++.++.
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 48899999999999999999998 688777653
No 183
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.83 E-value=0.0012 Score=62.74 Aligned_cols=40 Identities=18% Similarity=0.126 Sum_probs=31.0
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHH--h-------CCceEEEeecc
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANY--L-------GYDIYDLELTE 272 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~--l-------~~~i~~l~l~~ 272 (517)
|++...-++|+||||+|||+|+..+|.. + +..++.++...
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 5666667999999999999999999985 2 34566665544
No 184
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.83 E-value=0.00081 Score=62.32 Aligned_cols=31 Identities=29% Similarity=0.331 Sum_probs=27.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEEe
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDLE 269 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l~ 269 (517)
-+.|.|+|||||||+++.||..+|+++++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 5789999999999999999999998887654
No 185
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.82 E-value=0.00081 Score=65.48 Aligned_cols=32 Identities=31% Similarity=0.399 Sum_probs=27.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH---hCCceEEEee
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY---LGYDIYDLEL 270 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~---l~~~i~~l~l 270 (517)
-++|.|+||+||||+++.||.. .|++++.++.
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~ 40 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGS 40 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECc
Confidence 5889999999999999999998 6888775543
No 186
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.81 E-value=0.00055 Score=69.79 Aligned_cols=50 Identities=16% Similarity=0.323 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCceEE
Q 010133 209 PEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYD 267 (517)
Q Consensus 209 ~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i~~ 267 (517)
+.+.+.+++.+..++... ....++|.||||+|||+++++||+.++++++.
T Consensus 5 ~~L~~~il~~l~~~i~~g---------~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDN---------YRVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp HHHHHHHHHHHHHTTTTC---------SCEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccC---------CeeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 455666666666555431 12358999999999999999999999988744
No 187
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.80 E-value=0.0015 Score=78.60 Aligned_cols=70 Identities=14% Similarity=0.249 Sum_probs=52.0
Q ss_pred hCCCCCcceEEeCCCCCcHHHHHHHHHHH---hCCceEEEeeccccC---------------------hHHHHHHHHh--
Q 010133 232 TGRAWKRGYLLYGPPGTGKSSMIAAMANY---LGYDIYDLELTEVHN---------------------NSELRKLLMK-- 285 (517)
Q Consensus 232 ~G~~~~rg~LL~GpPGTGKTsla~alA~~---l~~~i~~l~l~~~~~---------------------~~~L~~lf~~-- 285 (517)
-|++..+.++|+||||||||+|+.++|.. .+..++.++...... ...+..++..
T Consensus 29 GGi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~~p~t~e~l~~ll~~L~ 108 (1706)
T 3cmw_A 29 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 108 (1706)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCcCCCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHHHHhhccCccceeeeccCcHHHHHHHHHHHH
Confidence 47888889999999999999999998765 367788877665321 2333444433
Q ss_pred -ccCCcEEEEccchhhh
Q 010133 286 -TSSKSIIVIEDIDCSI 301 (517)
Q Consensus 286 -~~~~sII~iDdID~~~ 301 (517)
...+.+||||.|..++
T Consensus 109 ~~~~~~LVVIDSLt~L~ 125 (1706)
T 3cmw_A 109 RSGAVDVIVVDSVAALT 125 (1706)
T ss_dssp HHTCCSEEEESCSTTCC
T ss_pred hccCCCEEEEcchhhhc
Confidence 2568999999999875
No 188
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.79 E-value=0.0074 Score=63.62 Aligned_cols=59 Identities=15% Similarity=0.104 Sum_probs=45.1
Q ss_pred hhHHHHHHHhhcCCcccCCCceEEEEEeCC-------------CCCCChhhhccCCceeeEeccCCCHHHHHHHHHHhcC
Q 010133 344 SITLSGLLNFTDGLWSCCGSEKIFVFTTNH-------------IEKLDPALLRSGRMDMHIFMSYCSYPALLILLKNYLG 410 (517)
Q Consensus 344 ~~~ls~LLn~lDg~~s~~~~~~iiI~TTN~-------------~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~~~l~ 410 (517)
....+.||..|+.- ... ++|++||. ++.|+|.|+. |+.. +.|++++.++...+++..+.
T Consensus 309 ~~a~~aLlk~lEe~----~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R~~~-~~~~~~~~~e~~~iL~~~~~ 380 (456)
T 2c9o_A 309 IECFTYLHRALESS----IAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLD--RVMI-IRTMLYTPQEMKQIIKIRAQ 380 (456)
T ss_dssp HHHHHHHHHHTTST----TCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHT--TEEE-EECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcc----CCC-EEEEecCCccccccccccccccccCChhHHh--hcce-eeCCCCCHHHHHHHHHHHHH
Confidence 35678888888754 223 56655533 7789999999 9976 69999999999999987654
No 189
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.78 E-value=0.0011 Score=61.49 Aligned_cols=32 Identities=31% Similarity=0.431 Sum_probs=25.6
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHh---CCceEEEe
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLE 269 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~ 269 (517)
.-+.|.||+|+||||++++||+.+ |...+.++
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d 60 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILD 60 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEec
Confidence 357899999999999999999988 44433444
No 190
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.77 E-value=0.00093 Score=64.28 Aligned_cols=31 Identities=39% Similarity=0.461 Sum_probs=27.2
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCceEEE
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYDL 268 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i~~l 268 (517)
.-+.|.||||+||||+++.||..+++++++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d~ 40 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLDT 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 3588999999999999999999999877653
No 191
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.75 E-value=0.00077 Score=62.73 Aligned_cols=29 Identities=28% Similarity=0.392 Sum_probs=25.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEE
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDL 268 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l 268 (517)
-+.|.|||||||||+++.||+ +|+++++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccch
Confidence 478999999999999999998 88877654
No 192
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.75 E-value=0.00097 Score=64.83 Aligned_cols=32 Identities=38% Similarity=0.645 Sum_probs=28.7
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCceEEEe
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYDLE 269 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~ 269 (517)
..+.|.||||+||||+++.||..+++++++.+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 36999999999999999999999999887743
No 193
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.74 E-value=0.0007 Score=63.11 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=27.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEEe
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDLE 269 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l~ 269 (517)
-+.|.|++||||||+++.+|..+|+++++.|
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 4779999999999999999999998877643
No 194
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.73 E-value=0.00046 Score=64.27 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=25.8
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCceEEE
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYDL 268 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i~~l 268 (517)
.-+.|.|+|||||||+++.||..++...+.+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 3588999999999999999999886655444
No 195
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.66 E-value=0.0047 Score=59.22 Aligned_cols=31 Identities=23% Similarity=0.186 Sum_probs=26.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEEe
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDLE 269 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l~ 269 (517)
.++++||+|+|||.++.+++..++..++.+-
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~ 140 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVV 140 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEE
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 4899999999999999999988877666653
No 196
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.62 E-value=0.0021 Score=60.33 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=25.0
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHh
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l 261 (517)
|++...-+.|.||+|+|||||++.||..+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56655668999999999999999999865
No 197
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.60 E-value=0.0033 Score=69.29 Aligned_cols=57 Identities=23% Similarity=0.368 Sum_probs=36.7
Q ss_pred CcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeecc
Q 010133 201 TFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTE 272 (517)
Q Consensus 201 ~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~ 272 (517)
.|-+-.+++.+++.|...+. .+ .-.|++||||||||+++..+...+ +..|..+..+.
T Consensus 184 ~~~~~~LN~~Q~~AV~~al~----~~-----------~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN 243 (646)
T 4b3f_X 184 TFFNTCLDTSQKEAVLFALS----QK-----------ELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSN 243 (646)
T ss_dssp CCSSTTCCHHHHHHHHHHHH----CS-----------SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred cccCCCCCHHHHHHHHHHhc----CC-----------CceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCch
Confidence 33333578888887755432 21 137899999999998777665444 66666555543
No 198
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.59 E-value=0.0058 Score=62.46 Aligned_cols=23 Identities=52% Similarity=0.846 Sum_probs=21.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l 261 (517)
-+++.||+|+|||||+++|++.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 48899999999999999999887
No 199
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=96.55 E-value=0.0021 Score=50.59 Aligned_cols=48 Identities=15% Similarity=0.070 Sum_probs=38.3
Q ss_pred cCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhhCCCCCCHHHHHHHHHH
Q 010133 394 SYCSYPALLILLKNYLGYEESDLEDETLKELEDVVGKAEMTPADISEVLIK 444 (517)
Q Consensus 394 ~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~~~~~~spadi~~~l~~ 444 (517)
|+|+.++|..||+.++...... .+..++.|+.. +.|||+|||..+|..
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~-~~~dl~~la~~--t~G~SGADi~~l~~e 48 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLT-RGINLRKIAEL--MPGASGAEVKGVCTE 48 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEEC-TTCCHHHHHHT--CTTCCHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHH--cCCCCHHHHHHHHHH
Confidence 6899999999999998765422 23457778776 789999999998873
No 200
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.54 E-value=0.00075 Score=62.91 Aligned_cols=28 Identities=21% Similarity=0.090 Sum_probs=23.7
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCce
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDI 265 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i 265 (517)
.-++|.|+|||||||+++.||..++...
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~ 37 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAAG 37 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3588999999999999999999875433
No 201
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.53 E-value=0.00097 Score=61.53 Aligned_cols=31 Identities=32% Similarity=0.549 Sum_probs=26.7
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCceEEEe
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYDLE 269 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~ 269 (517)
.-+.|.|+|||||||+++.||.. |+++++.+
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 35889999999999999999998 87777654
No 202
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.52 E-value=0.0013 Score=61.72 Aligned_cols=31 Identities=29% Similarity=0.355 Sum_probs=27.6
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEEe
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDLE 269 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l~ 269 (517)
-+.|.|+||||||++++.||..+|+++++.+
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d 35 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELSMIYVDTG 35 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecCC
Confidence 5889999999999999999999998776643
No 203
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.51 E-value=0.0046 Score=57.48 Aligned_cols=35 Identities=14% Similarity=0.290 Sum_probs=28.2
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeecc
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTE 272 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~ 272 (517)
.-+.|.||+|+||||+++.|++.+ +.+++.++...
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 347899999999999999999976 66777665443
No 204
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.51 E-value=0.0016 Score=59.64 Aligned_cols=25 Identities=36% Similarity=0.599 Sum_probs=21.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGY 263 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~ 263 (517)
-+.|.||||+||||+++.||+.++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 4789999999999999999986653
No 205
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.47 E-value=0.0027 Score=57.97 Aligned_cols=32 Identities=31% Similarity=0.534 Sum_probs=25.7
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhC---CceEEEe
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLG---YDIYDLE 269 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~---~~i~~l~ 269 (517)
.-++|.|+||+||||+++.+|..++ .+++.++
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 4588999999999999999999874 4454444
No 206
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.45 E-value=0.023 Score=61.42 Aligned_cols=41 Identities=10% Similarity=0.061 Sum_probs=33.9
Q ss_pred CceEEEEEeCCCC--CCChhhhccCCceeeEeccCCCHHHHHHHH
Q 010133 363 SEKIFVFTTNHIE--KLDPALLRSGRMDMHIFMSYCSYPALLILL 405 (517)
Q Consensus 363 ~~~iiI~TTN~~e--~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~ 405 (517)
-++-+|++|.++. .|+..++. -|...|.+...+..+.+.++
T Consensus 377 ~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~Dsr~IL 419 (574)
T 2iut_A 377 AGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKIDSRTIL 419 (574)
T ss_dssp TTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHHHHHHHH
T ss_pred CCeEEEEEecCcccccccHHHHh--hhccEEEEEcCCHHHHHHhc
Confidence 3478889998887 78888877 78899999999988877776
No 207
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.45 E-value=0.0018 Score=62.65 Aligned_cols=29 Identities=31% Similarity=0.584 Sum_probs=26.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEE
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYD 267 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~ 267 (517)
-+.|.||+||||||+++.||..+|+.+++
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 47899999999999999999999987664
No 208
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.44 E-value=0.0021 Score=62.03 Aligned_cols=28 Identities=29% Similarity=0.272 Sum_probs=25.1
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCce
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDI 265 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i 265 (517)
.-+.|.|||||||||+++.||..+++++
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~ 50 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNE 50 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhc
Confidence 3588999999999999999999999763
No 209
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=96.43 E-value=0.0019 Score=52.13 Aligned_cols=50 Identities=16% Similarity=0.076 Sum_probs=39.5
Q ss_pred eccCCCHHHHHHHHHHhcCCCCCCCChHhHHHHHHhhCCCCCCHHHHHHHHHH
Q 010133 392 FMSYCSYPALLILLKNYLGYEESDLEDETLKELEDVVGKAEMTPADISEVLIK 444 (517)
Q Consensus 392 ~~~~p~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~~~~~~spadi~~~l~~ 444 (517)
+-++|+.++|.+|++.++...... .+..++.|++. +.|||+|||.++|..
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~--T~G~SGADL~~l~~e 56 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLT-RGINLRKIAEL--MPGASGAEVKGVCTE 56 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEEC-TTCCCHHHHHT--CSSCCHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCC-cccCHHHHHHH--cCCCCHHHHHHHHHH
Confidence 467999999999999999765432 23456777776 789999999999873
No 210
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.42 E-value=0.002 Score=61.10 Aligned_cols=40 Identities=30% Similarity=0.260 Sum_probs=30.7
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeecc
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTE 272 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~ 272 (517)
|++...-++|+||||+|||+|+..+|... +..++.++...
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 56666679999999999999988886543 56777776543
No 211
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.41 E-value=0.0019 Score=60.58 Aligned_cols=30 Identities=37% Similarity=0.546 Sum_probs=25.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEEe
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDLE 269 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l~ 269 (517)
-+.|.|++|+||||+++.||. +|+++++.+
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~-lg~~~id~D 35 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD-LGINVIDAD 35 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCEEEEcc
Confidence 578999999999999999998 887766543
No 212
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.41 E-value=0.0024 Score=61.01 Aligned_cols=30 Identities=27% Similarity=0.511 Sum_probs=26.6
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEE
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDL 268 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l 268 (517)
-+.|.|+|||||||+++.||..+|+++++.
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~lg~~~~d~ 47 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDFGFTYLDT 47 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecC
Confidence 478999999999999999999999877653
No 213
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.39 E-value=0.002 Score=60.04 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=24.3
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 235 AWKRGYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 235 ~~~rg~LL~GpPGTGKTsla~alA~~l~ 262 (517)
+.++-++|.||||+||||+++.|+..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3345689999999999999999999885
No 214
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.37 E-value=0.0026 Score=66.42 Aligned_cols=41 Identities=22% Similarity=0.223 Sum_probs=30.3
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccccChHHH
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNNSEL 279 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~~~~~~L 279 (517)
+.-++|.||||+||||+++.++..+++.++ +...+..-..+
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i--~~D~~~~~~~~ 298 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHV--NRDTLGSWQRC 298 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEEC--CGGGSCSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEE--ccchHHHHHHH
Confidence 456889999999999999999999876544 44444433333
No 215
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.35 E-value=0.0011 Score=65.45 Aligned_cols=29 Identities=28% Similarity=0.353 Sum_probs=24.0
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHh-CCceE
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYL-GYDIY 266 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l-~~~i~ 266 (517)
.-++|.||||+||||+++.|+..+ ++.++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 358999999999999999999974 65444
No 216
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.34 E-value=0.0021 Score=58.75 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=22.3
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~ 262 (517)
+-+.|.||+|+|||||++.|++.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999999764
No 217
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.33 E-value=0.025 Score=59.43 Aligned_cols=95 Identities=18% Similarity=0.229 Sum_probs=63.3
Q ss_pred HHHHHhccCCcEEEEccchhhhccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCchhhHHHHHHHhhcCCcc
Q 010133 280 RKLLMKTSSKSIIVIEDIDCSISLSNRNKRSNGSGSRGNCGNGNYYEPEMRCGSGSVGGEDGNNSITLSGLLNFTDGLWS 359 (517)
Q Consensus 280 ~~lf~~~~~~sII~iDdID~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg~~s 359 (517)
+..+..+...+||++||||.+....+ ..+.+....-....||..|||-..
T Consensus 242 ~~ai~~ae~~~il~~DEidki~~~~~------------------------------~~~~D~s~egvq~aLL~~le~~~~ 291 (444)
T 1g41_A 242 QKAIDAVEQNGIVFIDEIDKICKKGE------------------------------YSGADVSREGVQRDLLPLVEGSTV 291 (444)
T ss_dssp HHHHHHHHHHCEEEEETGGGGSCCSS------------------------------CSSSHHHHHHHHHHHHHHHHCCEE
T ss_pred HHHHHHhccCCeeeHHHHHHHhhccC------------------------------CCCCCchHHHHHHHHHHHhccccc
Confidence 34444455678999999999831000 001112233466789999998532
Q ss_pred c------CCCceEEEEEe----CCCCCCChhhhccCCceeeEeccCCCHHHHHHHHH
Q 010133 360 C------CGSEKIFVFTT----NHIEKLDPALLRSGRMDMHIFMSYCSYPALLILLK 406 (517)
Q Consensus 360 ~------~~~~~iiI~TT----N~~e~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~ 406 (517)
+ ....+++|+|. +.+..+-|.|+. ||+.+|.++..+.+++..|+.
T Consensus 292 ~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 292 STKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp EETTEEEECTTCEEEEEECCSSCCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred ccccceecCCcEEEEeccccccCChhhcchHHhc--ccceeeeCCCCCHHHHHHHHH
Confidence 1 23457888886 234446688887 999999999999999998884
No 218
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.32 E-value=0.0013 Score=66.50 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=28.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEEeec
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDLELT 271 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~ 271 (517)
-++|.||+|||||+|+..||..++..|+..|--
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred eEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 588999999999999999999999887766544
No 219
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.30 E-value=0.0015 Score=61.21 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=26.7
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHhCCceEEEe
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLE 269 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~ 269 (517)
.++++|.||||+|||+|+.++|...+ .++..|
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 35899999999999999999998876 555444
No 220
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.30 E-value=0.0037 Score=58.43 Aligned_cols=25 Identities=36% Similarity=0.549 Sum_probs=22.3
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~ 262 (517)
.-+.|.||+|+|||||++.|++.+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3477899999999999999999885
No 221
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.28 E-value=0.0029 Score=59.21 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=26.5
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhC----CceEEEe
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLG----YDIYDLE 269 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~----~~i~~l~ 269 (517)
.-++|.|+||+||||+++.|+..++ .+++.++
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 4588999999999999999999875 5566665
No 222
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.27 E-value=0.0021 Score=64.28 Aligned_cols=33 Identities=18% Similarity=0.516 Sum_probs=28.2
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHhCCceEEEe
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLE 269 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~ 269 (517)
++-++|.||+|+|||+|+..||..++..++..|
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~D 42 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVD 42 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecc
Confidence 446889999999999999999999987766554
No 223
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.25 E-value=0.0061 Score=63.93 Aligned_cols=60 Identities=20% Similarity=0.231 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhchh-HHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeec
Q 010133 211 KKIEIMEDLKDFANGMS-FYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELT 271 (517)
Q Consensus 211 ~k~~i~~~l~~fl~~~~-~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~ 271 (517)
....+.+.+...+.... .+. .....++.+++.||||+||||++..||..+ |..+..+++.
T Consensus 73 ~~~~~~~~l~~ll~~~~~~~~-~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 73 IIKIVYEELVKLLGEEAKKLE-LNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp HHHHHHHHHHHHHCCSCCCCC-CCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred HHHHHHHHHHHHhCCCCcCcc-ccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 44445555566655421 010 000123568999999999999999999876 5667766654
No 224
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.24 E-value=0.0013 Score=61.36 Aligned_cols=28 Identities=14% Similarity=0.242 Sum_probs=23.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh-CCceE
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL-GYDIY 266 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l-~~~i~ 266 (517)
-+.|.||||+||||+++.|++.+ ++.++
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~~~~~~i 51 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHLPNCSVI 51 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSTTEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcEEE
Confidence 47799999999999999999987 44433
No 225
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.22 E-value=0.0035 Score=59.51 Aligned_cols=39 Identities=28% Similarity=0.241 Sum_probs=29.9
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHH----hCCceEEEeec
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANY----LGYDIYDLELT 271 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~----l~~~i~~l~l~ 271 (517)
|++...-++++|+||+|||+|+..+|.. .+.+++.+++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 5666667999999999999999876533 36677776654
No 226
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.20 E-value=0.014 Score=50.94 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-+++.|+||+|||||+.++.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999764
No 227
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.18 E-value=0.0024 Score=64.83 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=27.2
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCceEEEe
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYDLE 269 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i~~l~ 269 (517)
+-++|.||+|+|||+|+..||..++..++..|
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 35889999999999999999999986655543
No 228
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.18 E-value=0.0089 Score=59.43 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=28.6
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHh----CCceEEEeecc
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYL----GYDIYDLELTE 272 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l----~~~i~~l~l~~ 272 (517)
++-++|.||+|+||||++..||..+ |..+..+++..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 4568899999999999999999776 55677666543
No 229
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.18 E-value=0.0022 Score=59.22 Aligned_cols=24 Identities=25% Similarity=0.330 Sum_probs=21.9
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHh
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l 261 (517)
.-+.|.||||+||||+++.|++.+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 458899999999999999999987
No 230
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.16 E-value=0.03 Score=59.84 Aligned_cols=41 Identities=12% Similarity=0.069 Sum_probs=32.9
Q ss_pred ceEEEEEeCCCC--CCChhhhccCCceeeEeccCCCHHHHHHHHH
Q 010133 364 EKIFVFTTNHIE--KLDPALLRSGRMDMHIFMSYCSYPALLILLK 406 (517)
Q Consensus 364 ~~iiI~TTN~~e--~LD~ALlRpGR~d~~I~~~~p~~e~~~~l~~ 406 (517)
++-+|++|.++. .++..+.. -+...|.|...+..+.+.++.
T Consensus 332 GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 332 GIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp TEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSHHHHHHHHS
T ss_pred CcEEEEEecCCccccccHHHHh--hcCCeEEEEcCCHHHHHHhcC
Confidence 367788888876 68887777 788899999999888877764
No 231
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.11 E-value=0.0023 Score=63.10 Aligned_cols=29 Identities=38% Similarity=0.387 Sum_probs=24.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEE
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDL 268 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l 268 (517)
-+.|.|+|||||||+++.|| .+|++++..
T Consensus 77 iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 48899999999999999999 678766543
No 232
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.11 E-value=0.0069 Score=63.47 Aligned_cols=61 Identities=16% Similarity=0.198 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHhchh-HHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeec
Q 010133 210 EKKIEIMEDLKDFANGMS-FYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELT 271 (517)
Q Consensus 210 ~~k~~i~~~l~~fl~~~~-~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~ 271 (517)
...+.+.+.+...+.... .+... .+.++-+++.||||+||||++..||..+ |..+..+++.
T Consensus 70 ~v~~~v~~eL~~~L~~~~~~~~~~-~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 70 WFISIVYDELSKLFGGDKEPNVNP-TKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp HHHHHHHHHHHHHHCSSSCCCCSC-CSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHHHHHHhcCccccccccc-cCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 455666666676666421 11111 1124568899999999999999999877 7777776654
No 233
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.11 E-value=0.015 Score=67.08 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=37.6
Q ss_pred cCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHH------hCCceEEEeecc
Q 010133 206 AIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANY------LGYDIYDLELTE 272 (517)
Q Consensus 206 ~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~------l~~~i~~l~l~~ 272 (517)
+|.+...++|.+.+.. .. ..+-+.++||+|.|||+||+.+++. +...++.++++.
T Consensus 131 VGRe~eLeeL~elL~~---~d---------~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~ 191 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLE---LR---------PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191 (1221)
T ss_dssp CCCHHHHHHHHHHHHH---CC---------SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCC
T ss_pred CCcHHHHHHHHHHHhc---cC---------CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCC
Confidence 6767776666555431 00 1356889999999999999999853 355566666654
No 234
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.10 E-value=0.0042 Score=57.53 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=22.9
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCC
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGY 263 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~ 263 (517)
|.++|.||+|+|||||+++|.....-
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 57999999999999999999887643
No 235
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.09 E-value=0.003 Score=59.16 Aligned_cols=29 Identities=14% Similarity=0.144 Sum_probs=27.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEE
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYD 267 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~ 267 (517)
-+.|.||+|||||++++.||..+|+++|+
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58899999999999999999999999885
No 236
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.08 E-value=0.0028 Score=60.29 Aligned_cols=26 Identities=35% Similarity=0.422 Sum_probs=22.4
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHH
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMA 258 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA 258 (517)
|++...-+.|.||+|+|||||++.|+
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 45555669999999999999999998
No 237
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.04 E-value=0.007 Score=63.55 Aligned_cols=63 Identities=21% Similarity=0.262 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeecc
Q 010133 209 PEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTE 272 (517)
Q Consensus 209 ~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~ 272 (517)
...++.+.+.+..++..+....... ..++-+++.||||+||||++..||..+ |..+..+++..
T Consensus 73 ~~v~~~l~~eL~~~L~~~~~~~~~~-~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~ 138 (443)
T 3dm5_A 73 EHIIKIVYEELTKFLGTEAKPIEIK-EKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT 138 (443)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCCCCC-SSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred HHHHHHHHHHHHHHhcCcccccccC-CCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3455666677777766422111111 124578999999999999999999877 67777766543
No 238
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.00 E-value=0.0032 Score=58.96 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=22.4
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~ 262 (517)
+-+.|.||+|+||||+++.|+..+.
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3588999999999999999999875
No 239
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.98 E-value=0.026 Score=51.89 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=17.4
Q ss_pred cceEEeCCCCCcHHHHH-HHHHHH
Q 010133 238 RGYLLYGPPGTGKSSMI-AAMANY 260 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla-~alA~~ 260 (517)
+.+++.+|+|+|||..+ ..+...
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 57999999999999863 334444
No 240
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.97 E-value=0.0036 Score=57.78 Aligned_cols=24 Identities=29% Similarity=0.657 Sum_probs=21.6
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~ 262 (517)
-+.|.||+|+|||||++.|++.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC
Confidence 478999999999999999999863
No 241
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.96 E-value=0.0091 Score=59.68 Aligned_cols=61 Identities=15% Similarity=0.078 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeecc
Q 010133 211 KKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTE 272 (517)
Q Consensus 211 ~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~ 272 (517)
.++.+.+.+...+.....+ ......++-+++.||+|+||||++..||..+ +..+..+++..
T Consensus 79 ~~~~~~~~l~~~l~~~~~~-~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 79 ALESLKEIILEILNFDTKL-NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT 142 (306)
T ss_dssp HHHHHHHHHHHHTCSCCCC-CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred HHHHHHHHHHHHhCCCCCC-cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 5566666666666543200 1112234468899999999999999999877 56677666543
No 242
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.96 E-value=0.012 Score=54.76 Aligned_cols=62 Identities=15% Similarity=0.227 Sum_probs=40.0
Q ss_pred ceEEeCCCCCcHH-HHHHHHHHHh--CCceEEEeec---cccC--hHHH------------HHHHHhccCCcEEEEccch
Q 010133 239 GYLLYGPPGTGKS-SMIAAMANYL--GYDIYDLELT---EVHN--NSEL------------RKLLMKTSSKSIIVIEDID 298 (517)
Q Consensus 239 g~LL~GpPGTGKT-sla~alA~~l--~~~i~~l~l~---~~~~--~~~L------------~~lf~~~~~~sII~iDdID 298 (517)
=+++|||.|+||| .|++++.++. +..++.+... .... .+.+ ..++.....-.+|+|||+.
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~~~DvIlIDEaQ 101 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEGQ 101 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHHTCSEEEESSGG
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhccCCCEEEEEchh
Confidence 4789999999999 8999997765 6777777533 0000 0111 1122223345799999999
Q ss_pred hh
Q 010133 299 CS 300 (517)
Q Consensus 299 ~~ 300 (517)
-+
T Consensus 102 Ff 103 (195)
T 1w4r_A 102 FF 103 (195)
T ss_dssp GC
T ss_pred hh
Confidence 75
No 243
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=95.89 E-value=0.05 Score=50.73 Aligned_cols=52 Identities=19% Similarity=0.144 Sum_probs=30.5
Q ss_pred CCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCC---CCCcceEEeCCCCCcHHHH
Q 010133 199 PSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGR---AWKRGYLLYGPPGTGKSSM 253 (517)
Q Consensus 199 p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~---~~~rg~LL~GpPGTGKTsl 253 (517)
..+|+++..++...+.+.+ . -...+..|+...+ --.+.+++.+|+|+|||..
T Consensus 13 ~~~f~~l~l~~~l~~~l~~-~--g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFG-Y--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGT 67 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHH-H--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred cCChhhcCCCHHHHHHHHH-C--CCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHH
Confidence 3578888887776655532 1 1112222222111 1135799999999999976
No 244
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.89 E-value=0.0074 Score=60.20 Aligned_cols=60 Identities=17% Similarity=0.169 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHhchhHHHhhC--CCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEE
Q 010133 209 PEKKIEIMEDLKDFANGMSFYQKTG--RAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDL 268 (517)
Q Consensus 209 ~~~k~~i~~~l~~fl~~~~~y~~~G--~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l 268 (517)
+..++.+.+.+...+........+. +..+.-+.|.||+|+||||+++.||+.+ +..+...
T Consensus 70 ~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~ 134 (302)
T 3b9q_A 70 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMA 134 (302)
T ss_dssp HHHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 3456666777777775432001222 2334458899999999999999999987 3444443
No 245
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.87 E-value=0.0035 Score=62.81 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=26.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEEe
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDLE 269 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l~ 269 (517)
-+++.||+|+|||+|+..||..++..++..|
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~~iis~D 35 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNGEVISGD 35 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTEEEEECC
T ss_pred EEEEECCCcCCHHHHHHHHHHhCccceeecC
Confidence 5788999999999999999999886665543
No 246
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=95.86 E-value=0.027 Score=51.80 Aligned_cols=18 Identities=39% Similarity=0.427 Sum_probs=15.1
Q ss_pred cceEEeCCCCCcHHHHHH
Q 010133 238 RGYLLYGPPGTGKSSMIA 255 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~ 255 (517)
+.+++.+|+|+|||..+.
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 579999999999996433
No 247
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.83 E-value=0.005 Score=57.24 Aligned_cols=26 Identities=31% Similarity=0.544 Sum_probs=22.5
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l~ 262 (517)
.+-+.|.||+|+|||||++.|++.+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35689999999999999999998764
No 248
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.83 E-value=0.0046 Score=56.66 Aligned_cols=25 Identities=32% Similarity=0.574 Sum_probs=22.3
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~ 262 (517)
+-+.|.||+|+|||||++.|++.+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999998864
No 249
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.82 E-value=0.0033 Score=58.53 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=22.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~ 262 (517)
-+.|.||+|+|||||++.|++.++
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 477999999999999999999987
No 250
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.80 E-value=0.0058 Score=61.09 Aligned_cols=34 Identities=32% Similarity=0.579 Sum_probs=27.8
Q ss_pred hCCCCCcceEEeCCCCCcHHHHHHHHHHHhCCce
Q 010133 232 TGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDI 265 (517)
Q Consensus 232 ~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~~i 265 (517)
+.++...-+.|.||+|+|||||++.|++.+.-.|
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 3456666799999999999999999999984444
No 251
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.80 E-value=0.0071 Score=57.71 Aligned_cols=28 Identities=32% Similarity=0.553 Sum_probs=24.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC--CceE
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG--YDIY 266 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~--~~i~ 266 (517)
-+.|.||||+||||+++.|+..++ .+++
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~ 57 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLVKDYDVI 57 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTTTSCEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhcCCCce
Confidence 477899999999999999999996 4554
No 252
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.76 E-value=0.0059 Score=58.48 Aligned_cols=28 Identities=25% Similarity=0.498 Sum_probs=24.9
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCCceEE
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGYDIYD 267 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~~i~~ 267 (517)
+=|.||||+||||+++.||..++++.+.
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~is 38 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQIS 38 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEEC
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCeee
Confidence 5689999999999999999999977654
No 253
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.71 E-value=0.025 Score=52.16 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=20.0
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHh
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l 261 (517)
+.+++.+|+|+|||.++..++..+
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 479999999999999888776543
No 254
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.71 E-value=0.0075 Score=66.01 Aligned_cols=32 Identities=34% Similarity=0.597 Sum_probs=29.3
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHh---CCceEEEe
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLE 269 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~ 269 (517)
.-++|.|+||+||||++++||..+ |++++.++
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 358999999999999999999999 99999886
No 255
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.71 E-value=0.02 Score=49.85 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=20.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-+++.|++|+|||||+.++++.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999865
No 256
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.64 E-value=0.015 Score=51.20 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l 261 (517)
-+++.|+||+|||||+.++.+.-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 257
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.63 E-value=0.01 Score=60.64 Aligned_cols=61 Identities=16% Similarity=0.166 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHhchhHHHhhC--CCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEe
Q 010133 209 PEKKIEIMEDLKDFANGMSFYQKTG--RAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLE 269 (517)
Q Consensus 209 ~~~k~~i~~~l~~fl~~~~~y~~~G--~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~ 269 (517)
+..++.+.+.+...+........+. +..+.-++|.||+|+||||+++.||+.+ +..+....
T Consensus 127 ~~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g 192 (359)
T 2og2_A 127 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 192 (359)
T ss_dssp HHHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence 3455666666666665432111222 2334458899999999999999999987 44444433
No 258
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.62 E-value=0.014 Score=58.60 Aligned_cols=62 Identities=26% Similarity=0.364 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhchhHH---HhhC--CCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeecc
Q 010133 211 KKIEIMEDLKDFANGMSFY---QKTG--RAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTE 272 (517)
Q Consensus 211 ~k~~i~~~l~~fl~~~~~y---~~~G--~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~ 272 (517)
.++.+.+.+...+.....- ..+. ...++-+++.||+|+||||++..||..+ +..+..+++..
T Consensus 74 ~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 74 IKDALVESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp HHHHHHHHHHHHHHCSCC----CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred HHHHHHHHHHHHhCcccccccccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4555666666666543200 1121 2334568899999999999999999876 66777776643
No 259
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.61 E-value=0.028 Score=49.01 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=20.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-+++.|++|+|||||+.++.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 260
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.58 E-value=0.0061 Score=60.10 Aligned_cols=38 Identities=21% Similarity=0.168 Sum_probs=29.4
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHh----CCceEEEee
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYL----GYDIYDLEL 270 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l----~~~i~~l~l 270 (517)
|++...-++|.||||+|||+|+..||..+ |.+++.++.
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 45555568999999999999999998876 445655554
No 261
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.57 E-value=0.025 Score=50.78 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.4
Q ss_pred cceEEeCCCCCcHHHHHHHHHHH
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~ 260 (517)
.-++|.|+||+|||||+.++.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999863
No 262
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.56 E-value=0.0071 Score=57.09 Aligned_cols=24 Identities=29% Similarity=0.616 Sum_probs=21.9
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHh
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l 261 (517)
.-+.|.||+|+|||||++.|++.+
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358899999999999999999977
No 263
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.54 E-value=0.0089 Score=53.74 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=22.0
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHh
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l 261 (517)
.-+.|.||.|+|||||+++|++.+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 348899999999999999999988
No 264
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.54 E-value=0.0033 Score=58.46 Aligned_cols=24 Identities=17% Similarity=0.376 Sum_probs=22.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCC
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGY 263 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~ 263 (517)
+.|.||||+||||+++.|+..++.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh
Confidence 689999999999999999999853
No 265
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.53 E-value=0.011 Score=59.16 Aligned_cols=39 Identities=18% Similarity=0.178 Sum_probs=30.6
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeec
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELT 271 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~ 271 (517)
|++...-++|.|+||+|||+|+..+|... +.++..+++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 56666679999999999999999998654 4566666654
No 266
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.52 E-value=0.034 Score=49.60 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=20.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-+++.|++|+|||||+.++++.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5999999999999999999864
No 267
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.48 E-value=0.0098 Score=54.76 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=28.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCCceEEEeeccc
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEV 273 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~~i~~l~l~~~ 273 (517)
+|++|++|+|||++|..+|.. +.+++.+.....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCC
Confidence 689999999999999999987 888877776543
No 268
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.48 E-value=0.024 Score=49.57 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=19.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 010133 240 YLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~ 260 (517)
+++.|+||+|||||+.++.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999764
No 269
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.48 E-value=0.017 Score=50.70 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-+++.|++|+|||||+.++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999764
No 270
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.47 E-value=0.031 Score=57.52 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=21.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l 261 (517)
-++|.||||||||+|++.||+..
T Consensus 176 r~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 176 RGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEecCCCCChhHHHHHHHHHH
Confidence 48999999999999999998875
No 271
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.47 E-value=0.012 Score=62.57 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=26.0
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEee
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLEL 270 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l 270 (517)
+.-++|.||+|+|||||++.||+.+ +..++....
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~ 329 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAG 329 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecC
Confidence 3347899999999999999999987 344544433
No 272
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.46 E-value=0.024 Score=50.80 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l 261 (517)
-+++.|+||+|||||+.++.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998643
No 273
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.45 E-value=0.0091 Score=55.79 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=22.6
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l~ 262 (517)
++-+.|.||+|+|||||+++|++...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34588999999999999999998764
No 274
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.44 E-value=0.028 Score=49.21 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=19.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-+++.|+||+|||||+.++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999863
No 275
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.44 E-value=0.0072 Score=57.58 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=26.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEE
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYD 267 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~ 267 (517)
-+.+.|++|||||++++.||..+|+++|+
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 57899999999999999999999999875
No 276
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.44 E-value=0.0083 Score=55.94 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=22.3
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~ 262 (517)
.-+.|.||+|+|||||+++|++.+.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3478999999999999999999874
No 277
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.43 E-value=0.0084 Score=54.24 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=17.3
Q ss_pred cceEEeCCCCCcHHHHHHHH
Q 010133 238 RGYLLYGPPGTGKSSMIAAM 257 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~al 257 (517)
.-+.|.||+|+|||||++++
T Consensus 10 ei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 34789999999999999953
No 278
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.42 E-value=0.015 Score=53.94 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=21.4
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHh
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l 261 (517)
.-++|.|+||+|||||+.++++..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999999998754
No 279
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.42 E-value=0.0065 Score=62.90 Aligned_cols=31 Identities=19% Similarity=0.368 Sum_probs=26.7
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCceEEE
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYDL 268 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~i~~l 268 (517)
.-++|.||+|+|||+|+..||..++..++..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~ 33 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINS 33 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEEC
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeec
Confidence 3578999999999999999999998766554
No 280
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.40 E-value=0.042 Score=50.07 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-++|.|++|+|||||+.++.+.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999764
No 281
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.36 E-value=0.016 Score=50.93 Aligned_cols=21 Identities=38% Similarity=0.684 Sum_probs=18.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMAN 259 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~ 259 (517)
-++|.|+||+|||||+.++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 389999999999999999853
No 282
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.33 E-value=0.023 Score=59.94 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=20.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l 261 (517)
-.+|+||||+|||+|+..++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 48899999999999999998765
No 283
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.29 E-value=0.036 Score=50.01 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-++|.|+||+|||+|+.++.+.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999764
No 284
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.26 E-value=0.021 Score=60.95 Aligned_cols=59 Identities=14% Similarity=0.208 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHhchhHHHhhCC--CCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeec
Q 010133 211 KKIEIMEDLKDFANGMSFYQKTGR--AWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELT 271 (517)
Q Consensus 211 ~k~~i~~~l~~fl~~~~~y~~~G~--~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~ 271 (517)
..+.+.+.+...+..... .+.. ..++.++|.|+||+||||++..||..+ |..+..+++.
T Consensus 75 ~~~~v~~eL~~ll~~~~~--~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D 138 (504)
T 2j37_W 75 IQHAVFKELVKLVDPGVK--AWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICAD 138 (504)
T ss_dssp HHHHHHHHHHHHHCCCCC--CCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHHHHHHhccccc--hhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 445555666666654211 1111 224568999999999999999999877 7778777763
No 285
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.25 E-value=0.01 Score=55.02 Aligned_cols=23 Identities=39% Similarity=0.762 Sum_probs=21.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l 261 (517)
-+.|.||+|+|||||++.||+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 37899999999999999999987
No 286
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.25 E-value=0.026 Score=50.93 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=20.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-+++.|++|+|||||+.++++.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999865
No 287
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.23 E-value=0.013 Score=57.98 Aligned_cols=27 Identities=30% Similarity=0.261 Sum_probs=23.1
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHhCC
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYLGY 263 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l~~ 263 (517)
+.-+.+.||+|+|||||++.|+..++.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345778999999999999999998863
No 288
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.23 E-value=0.042 Score=55.38 Aligned_cols=61 Identities=18% Similarity=0.256 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHhchh---HHH-hhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEee
Q 010133 210 EKKIEIMEDLKDFANGMS---FYQ-KTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLEL 270 (517)
Q Consensus 210 ~~k~~i~~~l~~fl~~~~---~y~-~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l 270 (517)
..++.+.+.+...+.... ... ....+.+.-+.|.||+|+||||+++.||+.+ +..+.....
T Consensus 98 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~ 165 (328)
T 3e70_C 98 IIEEAVKEAVSEILETSRRIDLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAAS 165 (328)
T ss_dssp HHHHHHHHHHHHHSCCSSCCCHHHHHHSSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHhCCccccchhhhcccCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEee
Confidence 344555566666665431 000 0122334568899999999999999999987 445554443
No 289
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.20 E-value=0.011 Score=63.33 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=26.3
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhC---CceEEEee
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLG---YDIYDLEL 270 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~---~~i~~l~l 270 (517)
.-++|.|+||+||||+++.||.+++ .+...++.
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~ 71 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNV 71 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecc
Confidence 3589999999999999999999984 44444443
No 290
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.19 E-value=0.026 Score=49.48 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=19.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMAN 259 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~ 259 (517)
-+++.|+||+|||||+.++.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999986
No 291
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.17 E-value=0.011 Score=55.99 Aligned_cols=28 Identities=36% Similarity=0.485 Sum_probs=23.5
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 235 AWKRGYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 235 ~~~rg~LL~GpPGTGKTsla~alA~~l~ 262 (517)
+...-+.|.||+|+|||||+++|++...
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3345688999999999999999999875
No 292
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.17 E-value=0.0082 Score=54.92 Aligned_cols=27 Identities=33% Similarity=0.497 Sum_probs=23.0
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHhCCc
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYLGYD 264 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l~~~ 264 (517)
.+|+||.||+|+|||+++.++... |..
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~ 42 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQ 42 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCe
Confidence 369999999999999999999873 443
No 293
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.17 E-value=0.019 Score=52.03 Aligned_cols=45 Identities=18% Similarity=0.356 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHH
Q 010133 213 IEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 213 ~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~ 260 (517)
..+.+.+..++... .....+...-+++.|++|+|||||+.++++.
T Consensus 27 ~~l~~~l~~~~~~~---~~~~~~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 27 SQWREWIDEKLGGG---SGGGGSYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp HHHHHHHHHHC-----------CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhh---cCCCCCCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34445555554432 1111233456999999999999999999874
No 294
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.14 E-value=0.013 Score=57.07 Aligned_cols=23 Identities=48% Similarity=0.839 Sum_probs=21.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l 261 (517)
-++|.||+|+|||||+++|++.+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHhC
Confidence 48899999999999999999876
No 295
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.10 E-value=0.055 Score=48.68 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l 261 (517)
-++|.|+||+|||+|++.+.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 48999999999999999887754
No 296
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.10 E-value=0.02 Score=50.37 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=19.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMAN 259 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~ 259 (517)
-+++.|+||+|||||+.++.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999986
No 297
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.10 E-value=0.03 Score=49.85 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=20.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-+++.|+||+|||||+.++.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999764
No 298
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.07 E-value=0.019 Score=60.44 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=30.7
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHh----CCceEEEeec
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYL----GYDIYDLELT 271 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l----~~~i~~l~l~ 271 (517)
|++...-++|.||||+|||+|+..+|..+ |.++..+++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 56666668999999999999999987754 5577777643
No 299
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.06 E-value=0.0083 Score=59.44 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=26.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC---CceEEEeecccc
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG---YDIYDLELTEVH 274 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~---~~i~~l~l~~~~ 274 (517)
-+.|.||+|+||||+++.++..++ ..+..+++..+.
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 478999999999999999999776 556667766664
No 300
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.05 E-value=0.013 Score=56.07 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=22.7
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCCc
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGYD 264 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~~ 264 (517)
+-|.||+|+|||||++.|++.+|..
T Consensus 28 igI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 28 IGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhchh
Confidence 6789999999999999999998754
No 301
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.00 E-value=0.017 Score=52.42 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=20.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-++|.|+||+|||||+.++.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 302
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=94.97 E-value=0.11 Score=48.78 Aligned_cols=54 Identities=17% Similarity=0.187 Sum_probs=30.2
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCC---CCcceEEeCCCCCcHHHH
Q 010133 197 KHPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRA---WKRGYLLYGPPGTGKSSM 253 (517)
Q Consensus 197 ~~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~---~~rg~LL~GpPGTGKTsl 253 (517)
.++.+|+++.+++...+.+.+ . . ...+..|+...++ -.+.+++.+|+|+|||..
T Consensus 21 ~~~~~f~~l~l~~~l~~~l~~-~-g-~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~ 77 (230)
T 2oxc_A 21 AEPADFESLLLSRPVLEGLRA-A-G-FERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCV 77 (230)
T ss_dssp ---CCGGGGTCCHHHHHHHHH-T-T-CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred CCCCCHhhcCCCHHHHHHHHH-C-C-CCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHH
Confidence 445678888887776655432 1 1 1112222222111 135799999999999976
No 303
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.97 E-value=0.024 Score=51.60 Aligned_cols=32 Identities=13% Similarity=0.279 Sum_probs=26.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh---CCceEEEee
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL---GYDIYDLEL 270 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l 270 (517)
-+.+.|++|+|||||+..|+..+ ++.+..+..
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~ 40 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKH 40 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEe
Confidence 57899999999999999999876 566665553
No 304
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.96 E-value=0.029 Score=50.72 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=20.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-++|.|++|+|||||+.++.+.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 305
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.95 E-value=0.016 Score=59.43 Aligned_cols=26 Identities=42% Similarity=0.717 Sum_probs=22.7
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l~ 262 (517)
..-++|.||+|+||||++++|++.+.
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 34589999999999999999998763
No 306
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.95 E-value=0.015 Score=63.15 Aligned_cols=32 Identities=22% Similarity=0.166 Sum_probs=28.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC----CceEEEee
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG----YDIYDLEL 270 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~----~~i~~l~l 270 (517)
-++|.|+||+||||++++|+..++ .+++.++.
T Consensus 398 ~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~ 433 (573)
T 1m8p_A 398 TIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLG 433 (573)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEH
T ss_pred EEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECc
Confidence 478999999999999999999986 77787763
No 307
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.95 E-value=0.053 Score=54.43 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=21.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~ 262 (517)
-+.|.||+|||||||++.|+..++
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 467899999999999999999886
No 308
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.95 E-value=0.016 Score=52.96 Aligned_cols=34 Identities=18% Similarity=0.137 Sum_probs=26.2
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEee
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLEL 270 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l 270 (517)
..-+.|.||+|+|||||+.+|+..+ ++.+-.+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~ 42 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEee
Confidence 3468899999999999999998875 445544443
No 309
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=94.95 E-value=0.05 Score=62.15 Aligned_cols=24 Identities=38% Similarity=0.416 Sum_probs=20.6
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHH
Q 010133 236 WKRGYLLYGPPGTGKSSMIAAMAN 259 (517)
Q Consensus 236 ~~rg~LL~GpPGTGKTsla~alA~ 259 (517)
..+-+.|.||.|+||||+.+.+|.
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHH
Confidence 345689999999999999999874
No 310
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.93 E-value=0.027 Score=59.01 Aligned_cols=62 Identities=11% Similarity=0.085 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh----CCceEEEeecc
Q 010133 211 KKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL----GYDIYDLELTE 272 (517)
Q Consensus 211 ~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l----~~~i~~l~l~~ 272 (517)
..+.+.+.+...+.....--......++.+++.|++|+||||++..||..+ |..+..+++..
T Consensus 74 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 74 FVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp THHHHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred HHHHHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 344555566666654210000111235678899999999999999998776 77888877764
No 311
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.93 E-value=0.02 Score=60.07 Aligned_cols=39 Identities=15% Similarity=0.141 Sum_probs=30.7
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHh----CCceEEEeec
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYL----GYDIYDLELT 271 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l----~~~i~~l~l~ 271 (517)
|++...-++|.|+||+|||+|+..+|... +.++..+++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 56666668999999999999999987654 5677777664
No 312
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.91 E-value=0.088 Score=59.33 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.8
Q ss_pred cceEEeCCCCCcHHHHHHHHHHH
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~ 260 (517)
+-++|.||.|+||||+.+.||..
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 46899999999999999999875
No 313
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.84 E-value=0.019 Score=54.12 Aligned_cols=30 Identities=30% Similarity=0.295 Sum_probs=24.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC---CceEEE
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG---YDIYDL 268 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~---~~i~~l 268 (517)
-+.|.||+|+||||+++.|+..++ ++++..
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 367889999999999999999884 555443
No 314
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.81 E-value=0.059 Score=48.99 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=20.6
Q ss_pred cceEEeCCCCCcHHHHHHHHHHH
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~ 260 (517)
.-+++.|+||+|||||+.++.+.
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35999999999999999999864
No 315
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=94.81 E-value=0.12 Score=48.03 Aligned_cols=17 Identities=24% Similarity=0.303 Sum_probs=14.9
Q ss_pred cceEEeCCCCCcHHHHH
Q 010133 238 RGYLLYGPPGTGKSSMI 254 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla 254 (517)
+.+++.+|+|+|||...
T Consensus 42 ~~~lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAY 58 (219)
T ss_dssp CCEEEECCSSHHHHHHH
T ss_pred CCEEEECCCCChHHHHH
Confidence 57999999999999853
No 316
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=94.81 E-value=0.095 Score=49.68 Aligned_cols=54 Identities=13% Similarity=-0.006 Sum_probs=29.0
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCC---CCcceEEeCCCCCcHHHHH
Q 010133 198 HPSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRA---WKRGYLLYGPPGTGKSSMI 254 (517)
Q Consensus 198 ~p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~---~~rg~LL~GpPGTGKTsla 254 (517)
+..+|+++..++...+.+.+. -...+..++...++ -.+.+++.+|+|+|||...
T Consensus 27 ~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 27 PVLNFYEANFPANVMDVIARQ---NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY 83 (242)
T ss_dssp CCSSTTTTTCCHHHHHHHHTT---TCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHH
T ss_pred ccCCHhhcCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHH
Confidence 335677777776665444220 01111112111110 1257999999999999763
No 317
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.76 E-value=0.027 Score=49.86 Aligned_cols=24 Identities=25% Similarity=0.474 Sum_probs=20.9
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHh
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l 261 (517)
.-+++.|++|+|||||+.++.+.-
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 359999999999999999998643
No 318
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.74 E-value=0.071 Score=59.97 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=18.8
Q ss_pred cceEEeCCCCCcHHHHHHHHHHH
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~ 260 (517)
..+++.||+|+|||+++..++..
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999977776544
No 319
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.68 E-value=0.016 Score=63.56 Aligned_cols=32 Identities=31% Similarity=0.373 Sum_probs=23.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh----CCceEEEee
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL----GYDIYDLEL 270 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l----~~~i~~l~l 270 (517)
.+|+.||||||||+++..++..+ +..+..+..
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~ 232 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAP 232 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEES
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 57999999999999988887665 344544443
No 320
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.67 E-value=0.0094 Score=56.46 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=14.8
Q ss_pred ceEEeCCCCCcHHHHHHHHH-HHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMA-NYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA-~~l~ 262 (517)
-+.|.||+|+||||+++.|+ +.+.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp EEEEECSCC----CHHHHHHC----
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 47899999999999999999 8763
No 321
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.63 E-value=0.036 Score=57.77 Aligned_cols=56 Identities=21% Similarity=0.276 Sum_probs=37.3
Q ss_pred CCCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHhCC---ceEEE
Q 010133 199 PSTFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGY---DIYDL 268 (517)
Q Consensus 199 p~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l~~---~i~~l 268 (517)
+.+++++....+.+. +++++ +..+ ..-+++.||+|+||||++++|++.++. .++.+
T Consensus 143 ~~~l~~Lg~~~~~~~-~L~~l---~~~~----------ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ 201 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHD-NFRRL---IKRP----------HGIILVTGPTGSGKSTTLYAGLQELNSSERNILTV 201 (418)
T ss_dssp CCCGGGSCCCHHHHH-HHHHH---HTSS----------SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEE
T ss_pred CCCHHHcCCCHHHHH-HHHHH---HHhc----------CCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEe
Confidence 446788877765533 33333 2221 123789999999999999999998843 45544
No 322
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.61 E-value=0.041 Score=49.21 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=20.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-++|.|++|+|||+|+.++.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 323
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.59 E-value=0.033 Score=55.27 Aligned_cols=60 Identities=17% Similarity=0.273 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHhchhHHHh-h--CCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeeccc
Q 010133 211 KKIEIMEDLKDFANGMSFYQK-T--GRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELTEV 273 (517)
Q Consensus 211 ~k~~i~~~l~~fl~~~~~y~~-~--G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~~~ 273 (517)
.++.+.+.+...+.... .. + ..+ ++-+++.||+|+||||++..+|..+ +..+..+++...
T Consensus 72 ~~~~~~~~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 72 FIKIVYDELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp HHHHHHHHHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred HHHHHHHHHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 44555666666554321 11 1 112 4457889999999999999999877 677777776543
No 324
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.58 E-value=0.026 Score=56.19 Aligned_cols=35 Identities=14% Similarity=0.119 Sum_probs=27.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC-----CceEEEeeccc
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG-----YDIYDLELTEV 273 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~-----~~i~~l~l~~~ 273 (517)
-+-|.||+|+|||||++.|++.++ ..+..+++...
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 477899999999999999999876 23555555544
No 325
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.46 E-value=0.027 Score=51.13 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l 261 (517)
-++|.|++|+|||+|+.++.+.-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 326
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.46 E-value=0.025 Score=53.99 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=21.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHHh-------CCceEEE
Q 010133 240 YLLYGPPGTGKSSMIAAMANYL-------GYDIYDL 268 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l-------~~~i~~l 268 (517)
+.|.||+|+||||+++.|+..+ +++++..
T Consensus 28 I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 28 ITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp EEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 6788999999999999999988 5666543
No 327
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.46 E-value=0.039 Score=50.46 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.2
Q ss_pred cceEEeCCCCCcHHHHHHHHHHH
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~ 260 (517)
.-++|.|++|+|||+|+.++.+.
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999753
No 328
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.45 E-value=0.084 Score=48.74 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=19.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-++|.|++|+|||||+.++.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999753
No 329
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.45 E-value=0.014 Score=61.79 Aligned_cols=27 Identities=22% Similarity=0.456 Sum_probs=23.6
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCCc
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGYD 264 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~~ 264 (517)
.-++|.|.||+||||+++.+|..++..
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~~~ 66 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLNFI 66 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 358999999999999999999987543
No 330
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.45 E-value=0.028 Score=50.94 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-+++.|++|+|||+|+.++.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999863
No 331
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.45 E-value=0.058 Score=56.29 Aligned_cols=59 Identities=22% Similarity=0.249 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhchhHHHhhCCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeec
Q 010133 211 KKIEIMEDLKDFANGMSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELT 271 (517)
Q Consensus 211 ~k~~i~~~l~~fl~~~~~y~~~G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~ 271 (517)
..+.+.+.+...+.... ..+....++.+++.||+|+||||++..||..+ +..+..+++.
T Consensus 74 ~~~~v~~~L~~~~~~~~--~~i~l~~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 74 ILATVYEALKEALGGEA--RLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (425)
T ss_dssp HHHHHHHHHHHHTTSSC--CCCCCCSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred HHHHHHHHHHHHhCCCc--ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence 44455555555554321 11222234568889999999999999999887 5677777664
No 332
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.44 E-value=0.029 Score=56.83 Aligned_cols=39 Identities=18% Similarity=0.173 Sum_probs=30.4
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeec
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELT 271 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~ 271 (517)
|+....-++|.|+||+|||+|+..+|..+ +.++..+++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 45555569999999999999999998764 6777766653
No 333
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.43 E-value=0.089 Score=60.24 Aligned_cols=62 Identities=23% Similarity=0.325 Sum_probs=38.3
Q ss_pred cceEEeCCCCCcHHHHHHHHHHH-----hCCceE----EEe-----eccccC--------------hHHHHHHHHhccCC
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANY-----LGYDIY----DLE-----LTEVHN--------------NSELRKLLMKTSSK 289 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~-----l~~~i~----~l~-----l~~~~~--------------~~~L~~lf~~~~~~ 289 (517)
+-++|.||.|+||||+++.+|.- .|..+. .+. +..+.. -..+..++..+..|
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~~ 742 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKD 742 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHHHHHHHHCCTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHHhccCC
Confidence 45899999999999999998532 232211 110 001110 12234445556789
Q ss_pred cEEEEccchh
Q 010133 290 SIIVIEDIDC 299 (517)
Q Consensus 290 sII~iDdID~ 299 (517)
++|+|||.-+
T Consensus 743 sLlLLDEp~~ 752 (934)
T 3thx_A 743 SLIIIDELGR 752 (934)
T ss_dssp CEEEEESCSC
T ss_pred cEEEEeCCCC
Confidence 9999999865
No 334
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.41 E-value=0.02 Score=54.00 Aligned_cols=31 Identities=29% Similarity=0.413 Sum_probs=27.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEEee
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDLEL 270 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l~l 270 (517)
.+-|+|.+||||||+++.++. +|+++++.|.
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 477999999999999999998 9999887765
No 335
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.41 E-value=0.02 Score=51.78 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.6
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~ 262 (517)
-.+|+||.|+|||+++.||+..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 357999999999999999998876
No 336
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.38 E-value=0.015 Score=52.74 Aligned_cols=23 Identities=22% Similarity=0.301 Sum_probs=20.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l 261 (517)
-+++.|++|+|||||+.++.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999997654
No 337
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=94.37 E-value=0.18 Score=55.80 Aligned_cols=19 Identities=32% Similarity=0.552 Sum_probs=16.8
Q ss_pred CcceEEeCCCCCcHHHHHH
Q 010133 237 KRGYLLYGPPGTGKSSMIA 255 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~ 255 (517)
.+.+++.||+|+|||+.+.
T Consensus 46 ~~~~lv~apTGsGKT~~~~ 64 (715)
T 2va8_A 46 GNRLLLTSPTGSGKTLIAE 64 (715)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCcEEEEcCCCCcHHHHHH
Confidence 5689999999999999873
No 338
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.36 E-value=0.027 Score=56.11 Aligned_cols=25 Identities=36% Similarity=0.587 Sum_probs=22.4
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHh
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l 261 (517)
+.-+.|.||+|+||||+++.||+.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3458899999999999999999987
No 339
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.32 E-value=0.037 Score=56.26 Aligned_cols=33 Identities=33% Similarity=0.439 Sum_probs=27.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeec
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELT 271 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~ 271 (517)
-+.|.|+||+|||||+.+++..+ |..+..+++.
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 58899999999999999999886 6666666554
No 340
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.31 E-value=0.0089 Score=57.91 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=21.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~ 262 (517)
-+.|.|++|+||||+++.||..++
T Consensus 26 ~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEECSTTSSHHHHHTTTGGGCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 478899999999999999999983
No 341
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.28 E-value=0.024 Score=49.33 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-+++.|++|+|||||+.++++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999864
No 342
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.28 E-value=0.022 Score=49.90 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=20.5
Q ss_pred cceEEeCCCCCcHHHHHHHHHHH
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~ 260 (517)
--+++.|+||+|||||+.++.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999874
No 343
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.27 E-value=0.026 Score=56.48 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=21.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~ 262 (517)
-+.|.||+|+|||||++.|++.+.
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhhcc
Confidence 467899999999999999999875
No 344
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=94.25 E-value=0.28 Score=45.76 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=14.7
Q ss_pred cceEEeCCCCCcHHHHH
Q 010133 238 RGYLLYGPPGTGKSSMI 254 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla 254 (517)
+.+++.+|+|+|||...
T Consensus 58 ~~~l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 58 IDLIVVAQTGTGKTLSY 74 (228)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCChHHHHH
Confidence 57999999999999753
No 345
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.25 E-value=0.03 Score=51.21 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.3
Q ss_pred cceEEeCCCCCcHHHHHHHHHHH
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~ 260 (517)
.-++|.|+||+|||||+.++.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999764
No 346
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.25 E-value=0.039 Score=50.49 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=20.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-++|.|+||+|||||+.++.+.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999999874
No 347
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.24 E-value=0.037 Score=50.34 Aligned_cols=21 Identities=24% Similarity=0.605 Sum_probs=19.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMAN 259 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~ 259 (517)
-+++.|++|+|||||+.++.+
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999964
No 348
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.22 E-value=0.042 Score=49.78 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=19.6
Q ss_pred ceEEeCCCCCcHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMAN 259 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~ 259 (517)
-+++.|+||+|||||+.++.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 589999999999999999986
No 349
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.21 E-value=0.024 Score=54.06 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=22.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~ 262 (517)
-+.|.|++|+||||+++.||..++
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999999994
No 350
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.20 E-value=0.024 Score=51.98 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=20.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-+.|.||+|+|||||++++++.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999999985
No 351
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.19 E-value=0.023 Score=57.90 Aligned_cols=28 Identities=18% Similarity=0.342 Sum_probs=24.2
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHhCCc
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYLGYD 264 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l~~~ 264 (517)
..-+.|.||+|+|||||++.||+.+..+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3458999999999999999999987643
No 352
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.19 E-value=0.042 Score=50.70 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.5
Q ss_pred cceEEeCCCCCcHHHHHHHHHHH
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~ 260 (517)
.-+++.|++|+|||+|+.++.+.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999864
No 353
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.16 E-value=0.028 Score=51.11 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=20.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-+++.|++|+|||||+.++.+.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
No 354
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.16 E-value=0.031 Score=58.69 Aligned_cols=39 Identities=18% Similarity=0.178 Sum_probs=30.9
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeec
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELT 271 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~ 271 (517)
|++...-++|.|+||+|||+|+..+|... |.++..+++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 56655569999999999999999987665 6677777654
No 355
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.14 E-value=0.029 Score=59.80 Aligned_cols=39 Identities=15% Similarity=0.039 Sum_probs=30.6
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHh----CCceEEEeec
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYL----GYDIYDLELT 271 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l----~~~i~~l~l~ 271 (517)
|++...-++|.|+||+|||+|+..+|... +.++..+++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 55556668999999999999999998765 4567776653
No 356
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.08 E-value=0.018 Score=61.57 Aligned_cols=25 Identities=16% Similarity=0.397 Sum_probs=22.8
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~ 262 (517)
.++++.||+|+||||++++|++.+.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4699999999999999999999874
No 357
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.07 E-value=0.02 Score=53.76 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=20.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-+.|.||.|+|||||+++|++.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999986
No 358
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.06 E-value=0.023 Score=51.89 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.6
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l 261 (517)
-+.|.||+|+|||||++.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999854
No 359
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=94.05 E-value=0.029 Score=45.18 Aligned_cols=45 Identities=7% Similarity=0.000 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHhcCCCCCCCChHhHHHHHHhhCCCCCCHHHHHHHHHH
Q 010133 397 SYPALLILLKNYLGYEESDLEDETLKELEDVVGKAEMTPADISEVLIK 444 (517)
Q Consensus 397 ~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~~~~~~spadi~~~l~~ 444 (517)
+.++|..|++.++...... ++..++.|++. +.|||+|||.++|..
T Consensus 2 d~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~--t~G~SGADl~~l~~e 46 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVE-RGIRWELISRL--CPNSTGAELRSVCTE 46 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBC-SCCCHHHHHHT--CSSCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCC-CccCHHHHHHH--cCCCcHHHHHHHHHH
Confidence 4578999999998765432 24467888876 899999999999874
No 360
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.99 E-value=0.038 Score=52.26 Aligned_cols=30 Identities=23% Similarity=0.134 Sum_probs=25.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEE
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDL 268 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l 268 (517)
-+.|.||+|+||||+++.|+..++.++..+
T Consensus 7 ~i~~eG~~g~GKst~~~~l~~~l~~~~~~~ 36 (216)
T 3tmk_A 7 LILIEGLDRTGKTTQCNILYKKLQPNCKLL 36 (216)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHCSSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccceEE
Confidence 477889999999999999999998754333
No 361
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.98 E-value=0.048 Score=49.16 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.3
Q ss_pred cceEEeCCCCCcHHHHHHHHHHH
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~ 260 (517)
.-+++.|+||+|||||+.++++.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999764
No 362
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.98 E-value=0.043 Score=65.38 Aligned_cols=28 Identities=29% Similarity=0.468 Sum_probs=23.4
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 235 AWKRGYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 235 ~~~rg~LL~GpPGTGKTsla~alA~~l~ 262 (517)
+...-+.|.||+|+|||||+++|.++..
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred cCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 3344588999999999999999998774
No 363
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.98 E-value=0.024 Score=54.54 Aligned_cols=25 Identities=32% Similarity=0.561 Sum_probs=22.0
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~ 262 (517)
.-+.|.||.|+|||||+++||+.+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3578999999999999999998664
No 364
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.95 E-value=0.033 Score=59.54 Aligned_cols=26 Identities=8% Similarity=-0.019 Sum_probs=23.8
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhCC
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLGY 263 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~~ 263 (517)
..++|.|++||||||++++||..|+.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 35889999999999999999999985
No 365
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.89 E-value=0.03 Score=61.28 Aligned_cols=24 Identities=38% Similarity=0.599 Sum_probs=20.5
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHh
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l 261 (517)
+-+++.||||||||+++.++...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 368999999999999998886655
No 366
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.85 E-value=0.027 Score=55.15 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=21.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~ 262 (517)
.+.|.||+|+|||||+++|++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999999874
No 367
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=93.85 E-value=0.031 Score=63.15 Aligned_cols=23 Identities=43% Similarity=0.632 Sum_probs=19.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l 261 (517)
-+++.||||||||+++..++..+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 47999999999999988887665
No 368
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.85 E-value=0.019 Score=54.58 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=21.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~ 262 (517)
-+.|.||.|+|||||+++|++.+.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999998664
No 369
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.83 E-value=0.08 Score=48.54 Aligned_cols=21 Identities=19% Similarity=0.433 Sum_probs=19.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMAN 259 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~ 259 (517)
-++|.|+||+|||+|+.++.+
T Consensus 31 ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhh
Confidence 489999999999999999975
No 370
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.82 E-value=0.033 Score=49.36 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
.+++.|+||+|||||+.++.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999753
No 371
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.81 E-value=0.029 Score=53.85 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=21.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l 261 (517)
-+.|.||||+||||+++.|+..+
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999999887
No 372
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.80 E-value=0.087 Score=54.19 Aligned_cols=22 Identities=27% Similarity=0.620 Sum_probs=20.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHHh
Q 010133 240 YLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l 261 (517)
.++.||||||||+|+..||+..
T Consensus 178 ~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 178 GMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp EEEEECTTCCHHHHHHHHHHHH
T ss_pred EEEecCCCCChhHHHHHHHHHH
Confidence 8999999999999999998864
No 373
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.80 E-value=0.023 Score=54.50 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=21.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l 261 (517)
-+.|.||.|+|||||++.|++.+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999999876
No 374
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.77 E-value=0.023 Score=54.36 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.6
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~ 262 (517)
-+.|.||.|+|||||+++|++.+.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 478999999999999999998764
No 375
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.76 E-value=0.035 Score=48.78 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=20.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-+++.|+||+|||||+.++.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 376
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.73 E-value=0.024 Score=61.25 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=22.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~ 262 (517)
.+.|.||+|||||||+++||+.++
T Consensus 371 iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHHhhc
Confidence 478999999999999999999985
No 377
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=93.72 E-value=0.29 Score=54.33 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=16.1
Q ss_pred CcceEEeCCCCCcHHHHH
Q 010133 237 KRGYLLYGPPGTGKSSMI 254 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla 254 (517)
.+.+++.||+|+|||..+
T Consensus 39 ~~~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIA 56 (720)
T ss_dssp TCEEEEECCGGGCHHHHH
T ss_pred CCcEEEEcCCccHHHHHH
Confidence 467999999999999876
No 378
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.72 E-value=0.027 Score=49.96 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=19.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMAN 259 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~ 259 (517)
-+.|.|+||+|||||+.++++
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999986
No 379
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.70 E-value=0.036 Score=49.22 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=20.3
Q ss_pred cceEEeCCCCCcHHHHHHHHHHH
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~ 260 (517)
.-+++.|++|+|||||+.++.+.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999764
No 380
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.69 E-value=0.11 Score=51.36 Aligned_cols=35 Identities=26% Similarity=0.398 Sum_probs=28.2
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeec
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELT 271 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~ 271 (517)
++-+.+.||+|+||||++..+|..+ +..+..+++.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d 135 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 3457788999999999999999876 5677766654
No 381
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.68 E-value=0.028 Score=49.66 Aligned_cols=21 Identities=38% Similarity=0.692 Sum_probs=19.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMAN 259 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~ 259 (517)
-+++.|+||+|||||+.++.+
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 489999999999999999965
No 382
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.67 E-value=0.025 Score=53.44 Aligned_cols=24 Identities=29% Similarity=0.627 Sum_probs=21.6
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~ 262 (517)
-+.|.||.|+|||||+++|++.+.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999998764
No 383
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.66 E-value=0.05 Score=55.20 Aligned_cols=23 Identities=43% Similarity=0.699 Sum_probs=20.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l 261 (517)
-+.|.|+||+|||||+.++++.+
T Consensus 76 ~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 76 RVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999865
No 384
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.65 E-value=0.06 Score=54.38 Aligned_cols=30 Identities=37% Similarity=0.528 Sum_probs=24.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh---CCceEEE
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL---GYDIYDL 268 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l---~~~i~~l 268 (517)
-+.|.||||+|||||+++|++.+ +..+..+
T Consensus 57 ~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~ 89 (337)
T 2qm8_A 57 RVGITGVPGVGKSTTIDALGSLLTAAGHKVAVL 89 (337)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEE
Confidence 47799999999999999999876 4455443
No 385
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.64 E-value=0.058 Score=51.56 Aligned_cols=33 Identities=24% Similarity=0.560 Sum_probs=27.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh--CCceEEEeec
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL--GYDIYDLELT 271 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l--~~~i~~l~l~ 271 (517)
-+++.|.+|+||||++..+|..+ +..+..+++.
T Consensus 16 i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D 50 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD 50 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 47889999999999999999876 6677777654
No 386
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.62 E-value=0.031 Score=48.99 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=19.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-+++.|+||+|||||+.++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999753
No 387
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.51 E-value=0.027 Score=54.84 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=21.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~ 262 (517)
-+.|.||.|+|||||+++|++.+.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999998764
No 388
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.49 E-value=0.032 Score=53.88 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=20.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-+.|.||.|+|||||++.|++.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999986
No 389
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.46 E-value=0.026 Score=51.00 Aligned_cols=21 Identities=19% Similarity=0.607 Sum_probs=19.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMAN 259 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~ 259 (517)
-++|.|+||+|||||+..+++
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 388999999999999999976
No 390
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.46 E-value=0.027 Score=54.58 Aligned_cols=24 Identities=38% Similarity=0.749 Sum_probs=21.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~ 262 (517)
-+.|.||.|+|||||+++|++.+.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 378999999999999999998764
No 391
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.45 E-value=0.04 Score=49.68 Aligned_cols=22 Identities=14% Similarity=0.360 Sum_probs=19.9
Q ss_pred cceEEeCCCCCcHHHHHHHHHH
Q 010133 238 RGYLLYGPPGTGKSSMIAAMAN 259 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~ 259 (517)
.-+++.|++|+|||||+.++.+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999984
No 392
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.41 E-value=0.034 Score=54.30 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l 261 (517)
-+.|.||.|+|||||++.|++..
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999963
No 393
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.40 E-value=0.029 Score=53.40 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~ 262 (517)
-+.|.||.|+|||||+++|++.+.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 488999999999999999998763
No 394
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.38 E-value=0.04 Score=62.22 Aligned_cols=34 Identities=32% Similarity=0.384 Sum_probs=24.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh----CCceEEEeecc
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL----GYDIYDLELTE 272 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l----~~~i~~l~l~~ 272 (517)
-+|+.||||||||+++..++..+ +..+..+..+.
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn 414 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSN 414 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcH
Confidence 47999999999999887776543 55666555443
No 395
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=93.37 E-value=0.055 Score=42.75 Aligned_cols=45 Identities=11% Similarity=0.143 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHhcCCCCCCCChHhHHHHHHhhCCCCCCHHHHHHHHHH
Q 010133 397 SYPALLILLKNYLGYEESDLEDETLKELEDVVGKAEMTPADISEVLIK 444 (517)
Q Consensus 397 ~~e~~~~l~~~~l~~~~~~~~~~~~~~i~~l~~~~~~spadi~~~l~~ 444 (517)
+.++|..|++.++...... ++..++.|+.. +.|||+|||..+|..
T Consensus 2 d~~~R~~Il~~~l~~~~~~-~~vdl~~la~~--t~G~SGADi~~l~~e 46 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLS-EEVDLEDYVAR--PDKISGADINSICQE 46 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBC-TTCCTHHHHTS--SCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCC-cccCHHHHHHH--cCCCCHHHHHHHHHH
Confidence 6789999999998765432 23456777765 789999999999873
No 396
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.37 E-value=0.038 Score=49.00 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=19.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMAN 259 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~ 259 (517)
-+++.|+||+|||||+.++.+
T Consensus 8 ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 489999999999999999974
No 397
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.36 E-value=0.043 Score=49.46 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=20.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-+++.|+||+|||||+.++.+.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
No 398
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.35 E-value=0.044 Score=48.15 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=19.9
Q ss_pred cceEEeCCCCCcHHHHHHHHHH
Q 010133 238 RGYLLYGPPGTGKSSMIAAMAN 259 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~ 259 (517)
.-+++.|+||+|||||+.++.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999975
No 399
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.31 E-value=0.037 Score=49.72 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=20.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-++|.|++|+|||||+.++++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999873
No 400
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.30 E-value=0.029 Score=53.90 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=21.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~ 262 (517)
-+.|.||.|+|||||+++|++.+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 488999999999999999998763
No 401
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.30 E-value=0.023 Score=51.65 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~ 262 (517)
.+.|.||+|+|||||++.|++.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 478999999999999999999874
No 402
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.30 E-value=0.03 Score=53.98 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=21.6
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~ 262 (517)
-+.|.||.|+|||||++.|++.+.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999998764
No 403
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.29 E-value=0.03 Score=54.95 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~ 262 (517)
-+.|.||.|+|||||+++|++.+.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 378999999999999999998763
No 404
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=93.27 E-value=0.3 Score=49.35 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=19.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMAN 259 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~ 259 (517)
-+.+.|++|+|||||+.++.+
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 588999999999999999987
No 405
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.25 E-value=0.044 Score=48.13 Aligned_cols=20 Identities=30% Similarity=0.614 Sum_probs=18.4
Q ss_pred eEEeCCCCCcHHHHHHHHHH
Q 010133 240 YLLYGPPGTGKSSMIAAMAN 259 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~ 259 (517)
+++.|+||+|||||+.++.+
T Consensus 5 i~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999863
No 406
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.25 E-value=0.039 Score=48.83 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=19.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-+++.|++|+|||||+.++.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999853
No 407
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.24 E-value=0.031 Score=53.58 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~ 262 (517)
-+.|.||.|+|||||++.|++.+.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998764
No 408
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.23 E-value=0.032 Score=53.95 Aligned_cols=25 Identities=40% Similarity=0.533 Sum_probs=22.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGY 263 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~ 263 (517)
-+.|.||.|+|||||++.|++.+..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~p 52 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTSG 52 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 4789999999999999999998754
No 409
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.21 E-value=0.022 Score=51.66 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.3
Q ss_pred cceEEeCCCCCcHHHHHHHHHHH
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~ 260 (517)
.-+++.|++|+|||||+.++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999753
No 410
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=93.20 E-value=0.12 Score=54.65 Aligned_cols=29 Identities=31% Similarity=0.493 Sum_probs=25.0
Q ss_pred eEEeCCCCCcHHHH-HHHHHHHhCCceEEE
Q 010133 240 YLLYGPPGTGKSSM-IAAMANYLGYDIYDL 268 (517)
Q Consensus 240 ~LL~GpPGTGKTsl-a~alA~~l~~~i~~l 268 (517)
.++.|++|||||+| +..|++..+.+++.+
T Consensus 165 ~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V 194 (502)
T 2qe7_A 165 ELIIGDRQTGKTTIAIDTIINQKGQDVICI 194 (502)
T ss_dssp CEEEECSSSCHHHHHHHHHHGGGSCSEEEE
T ss_pred EEEECCCCCCchHHHHHHHHHhhcCCcEEE
Confidence 89999999999999 569999998886543
No 411
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.20 E-value=0.044 Score=48.47 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=19.7
Q ss_pred eEEeCCCCCcHHHHHHHHHHHh
Q 010133 240 YLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l 261 (517)
.+++||.|+|||+++.||.--+
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999997655
No 412
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.18 E-value=0.033 Score=54.18 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.6
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~ 262 (517)
-+.|.||.|+|||||+++|++.+.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 488999999999999999998763
No 413
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.17 E-value=0.037 Score=59.30 Aligned_cols=29 Identities=24% Similarity=0.292 Sum_probs=24.8
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHHh
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~alA~~l 261 (517)
|++...-++|.||||+|||+|++.+|...
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 55555668999999999999999998765
No 414
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.17 E-value=0.032 Score=56.98 Aligned_cols=24 Identities=21% Similarity=0.531 Sum_probs=21.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~ 262 (517)
-+.|.||+|||||||.++||+...
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 377999999999999999999763
No 415
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=93.16 E-value=0.089 Score=60.88 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=19.1
Q ss_pred CcceEEeCCCCCcHHHHHHHH
Q 010133 237 KRGYLLYGPPGTGKSSMIAAM 257 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~al 257 (517)
.+-++|.||.|+||||+.+.+
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHH
Confidence 356899999999999999998
No 416
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.14 E-value=0.038 Score=56.34 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~ 262 (517)
-+.|.||+|||||||.++||+...
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 477999999999999999998763
No 417
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.14 E-value=0.037 Score=59.33 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=27.0
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHH--HHHHh--CCceEEEee
Q 010133 233 GRAWKRGYLLYGPPGTGKSSMIAA--MANYL--GYDIYDLEL 270 (517)
Q Consensus 233 G~~~~rg~LL~GpPGTGKTsla~a--lA~~l--~~~i~~l~l 270 (517)
+++...-++|.||+|||||||++. +++.. +-..+.++.
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g 76 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 76 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 345556799999999999999999 55554 334444443
No 418
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.12 E-value=0.034 Score=54.19 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=21.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~ 262 (517)
-+.|.||.|+|||||+++|++.+.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Confidence 478999999999999999998764
No 419
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=93.11 E-value=0.06 Score=56.37 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=20.1
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHH
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~ 260 (517)
.+-.+++|+||||||+++..+++.
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCCT
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcc
Confidence 445789999999999999888753
No 420
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.09 E-value=0.039 Score=56.37 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=21.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l 261 (517)
-+.|.||+|||||||.++||+..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 37799999999999999999876
No 421
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.08 E-value=0.039 Score=56.71 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~ 262 (517)
-+.|.||+|||||||.+.||+...
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Confidence 377999999999999999999763
No 422
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.07 E-value=0.067 Score=54.28 Aligned_cols=30 Identities=27% Similarity=0.396 Sum_probs=25.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCCceEEE
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGYDIYDL 268 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~~i~~l 268 (517)
-+.|.||+|+|||||++.|++....+...+
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i 102 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGASADIIVL 102 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCCSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCEEEE
Confidence 378999999999999999999987665443
No 423
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.06 E-value=0.047 Score=51.47 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=21.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l 261 (517)
=+.|.|++|+||||+++.|+..+
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999988
No 424
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.05 E-value=0.035 Score=53.87 Aligned_cols=24 Identities=25% Similarity=0.548 Sum_probs=21.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~ 262 (517)
-+.|.||.|+|||||+++|++.+.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999998763
No 425
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.04 E-value=0.025 Score=57.80 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=22.5
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~ 262 (517)
..++|.||+|+|||||+++|++...
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998764
No 426
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.04 E-value=0.054 Score=51.48 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=23.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhCC----ceEE
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLGY----DIYD 267 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~~----~i~~ 267 (517)
-+.|.|++|+||||+++.++..++. +++.
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 3677899999999999999987754 5554
No 427
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.03 E-value=0.04 Score=56.26 Aligned_cols=24 Identities=29% Similarity=0.474 Sum_probs=21.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~ 262 (517)
-+.|.||+|||||||.+.||+...
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHHCCCC
Confidence 377999999999999999998763
No 428
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.03 E-value=0.035 Score=54.30 Aligned_cols=24 Identities=38% Similarity=0.540 Sum_probs=21.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~ 262 (517)
-+.|.||.|+|||||++.|++.+.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 488999999999999999999764
No 429
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.01 E-value=0.054 Score=47.97 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.9
Q ss_pred cceEEeCCCCCcHHHHHHHHHH
Q 010133 238 RGYLLYGPPGTGKSSMIAAMAN 259 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~ 259 (517)
.-+++.|+||+|||||+.++.+
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4589999999999999999975
No 430
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.00 E-value=0.036 Score=54.54 Aligned_cols=24 Identities=29% Similarity=0.710 Sum_probs=21.6
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~ 262 (517)
-+.|.||.|+|||||++.|++.+.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 378999999999999999998764
No 431
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.00 E-value=0.041 Score=56.44 Aligned_cols=24 Identities=29% Similarity=0.510 Sum_probs=21.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~ 262 (517)
-+.|.||+|||||||.++||+...
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCChHHHHHHHHHcCCC
Confidence 477999999999999999998763
No 432
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.97 E-value=0.035 Score=54.24 Aligned_cols=24 Identities=33% Similarity=0.696 Sum_probs=21.6
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~ 262 (517)
-+.|.||.|+|||||+++|++.+.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 478999999999999999999764
No 433
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.97 E-value=0.046 Score=48.43 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.6
Q ss_pred cceEEeCCCCCcHHHHHHHHHHH
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~ 260 (517)
.-+++.|++|+|||||+.++.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999875
No 434
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.95 E-value=0.036 Score=53.63 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~ 262 (517)
-+.|.||.|+|||||++.|++.+.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998763
No 435
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.94 E-value=0.049 Score=50.57 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=22.3
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~ 262 (517)
+-+++.|+||+|||||+.++++.+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3689999999999999999998864
No 436
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.92 E-value=0.055 Score=48.85 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-++|.|+||+|||||+.++.+.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 437
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.92 E-value=0.046 Score=48.91 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=20.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-+++.|++|+|||||+.++.+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999764
No 438
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.90 E-value=0.073 Score=57.39 Aligned_cols=31 Identities=29% Similarity=0.370 Sum_probs=25.6
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC---CceEEEe
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG---YDIYDLE 269 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~---~~i~~l~ 269 (517)
-++|.|+||+||||++++|+..++ .+++.++
T Consensus 374 ~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld 407 (546)
T 2gks_A 374 CVWLTGLPCAGKSTIAEILATMLQARGRKVTLLD 407 (546)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEEC
Confidence 478999999999999999998874 4555555
No 439
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.88 E-value=0.047 Score=49.14 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=20.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-+++.|+||+|||+|+.++++.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 440
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.88 E-value=0.043 Score=56.29 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=21.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l 261 (517)
-+.|.||+|||||||.+.||+..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47799999999999999999876
No 441
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.87 E-value=0.057 Score=47.93 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=19.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-+++.|+||+|||||+.++.+.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999764
No 442
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.81 E-value=0.053 Score=48.02 Aligned_cols=21 Identities=38% Similarity=0.669 Sum_probs=19.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMAN 259 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~ 259 (517)
-+++.|+||+|||||+.++.+
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999864
No 443
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.81 E-value=0.031 Score=56.34 Aligned_cols=25 Identities=20% Similarity=0.608 Sum_probs=22.6
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l~ 262 (517)
..+++.||+|+|||||+++|++...
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3689999999999999999999874
No 444
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.80 E-value=0.058 Score=48.05 Aligned_cols=22 Identities=14% Similarity=0.342 Sum_probs=19.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-+++.|+||+|||||+.++.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999753
No 445
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.77 E-value=0.04 Score=53.68 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=21.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~ 262 (517)
-+.|.||.|+|||||++.|++.+.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 478999999999999999998764
No 446
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.75 E-value=0.042 Score=49.18 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=19.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-+.|.|+||+|||||+.++++.
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999864
No 447
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.73 E-value=0.041 Score=53.61 Aligned_cols=23 Identities=30% Similarity=0.768 Sum_probs=21.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l 261 (517)
-+.|.||.|+|||||++.|++.+
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999875
No 448
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.69 E-value=0.036 Score=56.31 Aligned_cols=24 Identities=25% Similarity=0.623 Sum_probs=21.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~ 262 (517)
-+.|.||+|||||||.+.||+...
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSC
T ss_pred EEEEECCCCccHHHHHHHHHcCCC
Confidence 477999999999999999998763
No 449
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=92.67 E-value=0.12 Score=47.87 Aligned_cols=31 Identities=19% Similarity=0.147 Sum_probs=25.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh---CCceEEEe
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL---GYDIYDLE 269 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l---~~~i~~l~ 269 (517)
-++++||+|+|||+.+..+|..+ +..++.+.
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 47889999999999998887766 77776663
No 450
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.67 E-value=0.13 Score=49.64 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=20.9
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHh
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l 261 (517)
..++|.|++|+|||||+.++.+.-
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999998643
No 451
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.65 E-value=0.1 Score=48.76 Aligned_cols=29 Identities=31% Similarity=0.583 Sum_probs=23.8
Q ss_pred eEEeCCCCCcHHHHHHHHHHHh--CCceEEE
Q 010133 240 YLLYGPPGTGKSSMIAAMANYL--GYDIYDL 268 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l--~~~i~~l 268 (517)
+.|-|+.|+||||+++.|+..+ +++++..
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 35 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 5678999999999999999998 4555443
No 452
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.63 E-value=0.064 Score=48.36 Aligned_cols=22 Identities=14% Similarity=0.265 Sum_probs=19.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-++|.|++|+|||||+.++.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999753
No 453
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.61 E-value=0.064 Score=47.67 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=20.2
Q ss_pred cceEEeCCCCCcHHHHHHHHHHH
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~ 260 (517)
--+++.|++|+|||||+.++.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999998763
No 454
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=92.58 E-value=0.083 Score=55.36 Aligned_cols=29 Identities=31% Similarity=0.496 Sum_probs=24.7
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCCceEEE
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGYDIYDL 268 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~~i~~l 268 (517)
+.|.||+|||||||++.||+....+.-.+
T Consensus 160 ~~IvG~sGsGKSTLl~~Iag~~~~~~G~i 188 (438)
T 2dpy_A 160 MGLFAGSGVGKSVLLGMMARYTRADVIVV 188 (438)
T ss_dssp EEEEECTTSSHHHHHHHHHHHSCCSEEEE
T ss_pred EEEECCCCCCHHHHHHHHhcccCCCeEEE
Confidence 78999999999999999999986654433
No 455
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.58 E-value=0.066 Score=48.48 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=19.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-++|.|++|+|||+|+.++.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4899999999999999999764
No 456
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.58 E-value=0.12 Score=52.91 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=27.9
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHh---CCceEEEeec
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLELT 271 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l~ 271 (517)
.+.++.||+|+|||++++.++..+ +..++.+|..
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 478999999999999999997764 6677777653
No 457
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=92.55 E-value=0.84 Score=47.21 Aligned_cols=51 Identities=14% Similarity=0.070 Sum_probs=30.2
Q ss_pred CCcccccCChHHHHHHHHHHHHHHhchhHHHhhCCC---CCcceEEeCCCCCcHHHH
Q 010133 200 STFDTLAIDPEKKIEIMEDLKDFANGMSFYQKTGRA---WKRGYLLYGPPGTGKSSM 253 (517)
Q Consensus 200 ~~f~tv~~~~~~k~~i~~~l~~fl~~~~~y~~~G~~---~~rg~LL~GpPGTGKTsl 253 (517)
.+|+++.+.+...+.+.+ .-...+..++...+| -.+.+++.+|+|+|||..
T Consensus 56 ~~f~~~~l~~~l~~~l~~---~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a 109 (434)
T 2db3_A 56 QHFTSADLRDIIIDNVNK---SGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAA 109 (434)
T ss_dssp CCGGGSCCCHHHHHHHHH---TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred CChhhcCCCHHHHHHHHH---cCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHH
Confidence 478888887776555422 011122222222221 136799999999999983
No 458
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=92.54 E-value=0.12 Score=54.75 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=24.5
Q ss_pred eEEeCCCCCcHHHH-HHHHHHHhCCceEEE
Q 010133 240 YLLYGPPGTGKSSM-IAAMANYLGYDIYDL 268 (517)
Q Consensus 240 ~LL~GpPGTGKTsl-a~alA~~l~~~i~~l 268 (517)
.++.|++|||||+| +..|++..+.+++.+
T Consensus 166 ~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V 195 (507)
T 1fx0_A 166 ELIIGDRQTGKTAVATDTILNQQGQNVICV 195 (507)
T ss_dssp CBEEESSSSSHHHHHHHHHHTCCTTTCEEE
T ss_pred EEEecCCCCCccHHHHHHHHHhhcCCcEEE
Confidence 89999999999999 569999888775433
No 459
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.54 E-value=0.066 Score=48.83 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l 261 (517)
-+++.|+||+|||||+.++.+.-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998653
No 460
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=92.53 E-value=0.15 Score=49.86 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=19.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-+.|.|+||+|||||..++.+.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4889999999999999999863
No 461
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=92.50 E-value=0.051 Score=54.31 Aligned_cols=29 Identities=31% Similarity=0.316 Sum_probs=23.6
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHhCCceE
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYLGYDIY 266 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l~~~i~ 266 (517)
.+|+||.||+|+|||++|.++.. .|..++
T Consensus 147 g~gvli~G~sG~GKStlal~l~~-~G~~lv 175 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN-KNHLFV 175 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT-TTCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCEEE
Confidence 57999999999999999998865 454444
No 462
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.48 E-value=0.042 Score=49.28 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-+++.|+||+|||||+.++.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3789999999999999999763
No 463
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.47 E-value=0.051 Score=48.28 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=20.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-+++.|+||+|||+|+..+++.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 464
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.47 E-value=0.096 Score=52.83 Aligned_cols=33 Identities=27% Similarity=0.483 Sum_probs=25.9
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHh---CCceEEEee
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYL---GYDIYDLEL 270 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l---~~~i~~l~l 270 (517)
.-+.|.|+||+||||++.+|+..+ +..+..++.
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~ 92 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAV 92 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence 357889999999999999999876 555555543
No 465
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.43 E-value=0.095 Score=53.40 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~ 262 (517)
-+.|.||||+|||||+.+|++...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 588999999999999999997654
No 466
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.43 E-value=0.068 Score=48.36 Aligned_cols=22 Identities=27% Similarity=0.649 Sum_probs=19.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-+++.|++|+|||||+.++.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999763
No 467
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.41 E-value=0.069 Score=48.96 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.3
Q ss_pred cceEEeCCCCCcHHHHHHHHHHH
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~ 260 (517)
.-+++.|+||+|||||+.++.+.
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999853
No 468
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.38 E-value=0.059 Score=48.97 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=19.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMAN 259 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~ 259 (517)
-+++.|+||+|||||+.++++
T Consensus 25 ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999987
No 469
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.38 E-value=0.072 Score=48.18 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=19.6
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-++|.|++|+|||+|+..+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999888764
No 470
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.33 E-value=0.072 Score=48.23 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=20.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-++|.|+||+|||+|+.++.+.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 471
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.30 E-value=0.072 Score=52.79 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=21.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~ 262 (517)
-+.|.||+|+|||||+++|++...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 478999999999999999998654
No 472
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.27 E-value=0.022 Score=52.35 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-+.|.|++|+|||||++++++.
T Consensus 28 ~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 28 EVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998753
No 473
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=92.26 E-value=0.12 Score=54.95 Aligned_cols=29 Identities=31% Similarity=0.533 Sum_probs=24.9
Q ss_pred eEEeCCCCCcHHHH-HHHHHHHhCCceEEE
Q 010133 240 YLLYGPPGTGKSSM-IAAMANYLGYDIYDL 268 (517)
Q Consensus 240 ~LL~GpPGTGKTsl-a~alA~~l~~~i~~l 268 (517)
.++.|++|||||+| +..|++..+.+++.+
T Consensus 178 ~~I~g~~g~GKT~Lal~~I~~~~~~dv~~V 207 (515)
T 2r9v_A 178 ELIIGDRQTGKTAIAIDTIINQKGQGVYCI 207 (515)
T ss_dssp EEEEEETTSSHHHHHHHHHHTTTTTTEEEE
T ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCcEEE
Confidence 89999999999999 569999988886543
No 474
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=92.26 E-value=0.07 Score=53.34 Aligned_cols=28 Identities=29% Similarity=0.443 Sum_probs=23.5
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHhCCce
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYLGYDI 265 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l~~~i 265 (517)
.+|+||.|++|+|||+++.++... |..+
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~l 171 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRL 171 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCce
Confidence 468999999999999999999875 4433
No 475
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=92.22 E-value=0.025 Score=53.93 Aligned_cols=23 Identities=39% Similarity=0.434 Sum_probs=20.8
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhC
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~ 262 (517)
+.|.||+|+|||||+.+|+..+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 46889999999999999999874
No 476
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.22 E-value=0.036 Score=56.47 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=21.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l 261 (517)
-+.|.||+|||||||.+.||+..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47799999999999999999876
No 477
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.19 E-value=0.054 Score=52.59 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=20.5
Q ss_pred cceEEeCCCCCcHHHHHHHHHHH
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~ 260 (517)
..+.|.|+||+|||||+.++.+.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999764
No 478
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.17 E-value=0.029 Score=50.58 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.4
Q ss_pred cceEEeCCCCCcHHHHHHHHHHH
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~ 260 (517)
.-+++.|++|+|||||+.++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999764
No 479
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.15 E-value=0.067 Score=47.67 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=19.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMAN 259 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~ 259 (517)
-++|.|+||+|||+|+.++.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999985
No 480
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=92.15 E-value=0.88 Score=43.30 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=22.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh---CCceEEEe
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL---GYDIYDLE 269 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l---~~~i~~l~ 269 (517)
-+++|||.|+|||+.+..++... |..++.+.
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47789999999997666554433 66666664
No 481
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.14 E-value=0.066 Score=49.04 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=19.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-++|.|+||+|||||+.++.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999763
No 482
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=92.14 E-value=0.055 Score=50.33 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=19.5
Q ss_pred ceEEeCCCCCcHHHHHHH-HHHHh
Q 010133 239 GYLLYGPPGTGKSSMIAA-MANYL 261 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~a-lA~~l 261 (517)
-+++.|++|+|||||+.+ +.+..
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 589999999999999999 55543
No 483
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=92.14 E-value=0.33 Score=52.22 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=25.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCCceEEE
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGYDIYDL 268 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~~i~~l 268 (517)
.+|.|++|||||+|+..||+..+.+++.+
T Consensus 235 ~~Ifgg~g~GKT~L~~~ia~~~~~~v~V~ 263 (600)
T 3vr4_A 235 AAVPGPFGAGKTVVQHQIAKWSDVDLVVY 263 (600)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSSCSEEEE
T ss_pred EeeecCCCccHHHHHHHHHhccCCCEEEE
Confidence 89999999999999999999988776543
No 484
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.11 E-value=0.098 Score=51.86 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHhC
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYLG 262 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l~ 262 (517)
-+.|.||+|+|||||+++|+ ...
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SCC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hhh
Confidence 47899999999999999999 543
No 485
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.07 E-value=0.058 Score=48.41 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=20.2
Q ss_pred cceEEeCCCCCcHHHHHHHHHHH
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~ 260 (517)
.-+++.|+||+|||||+.++.+.
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999753
No 486
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.07 E-value=0.073 Score=49.57 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=21.4
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHh
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l 261 (517)
.-++|.|++|+|||||+..++..+
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 358888999999999999999876
No 487
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=92.02 E-value=0.12 Score=52.76 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=19.1
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 010133 240 YLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~ 260 (517)
+.|.|+||+|||||+.++++.
T Consensus 182 V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 182 IGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp EEEECBTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHCC
Confidence 779999999999999999753
No 488
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=92.01 E-value=0.14 Score=48.14 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=18.4
Q ss_pred eEEeCCCCCcHHHHHHHHHH
Q 010133 240 YLLYGPPGTGKSSMIAAMAN 259 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~ 259 (517)
++|.|.+|+|||+|+..+.+
T Consensus 16 ivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHh
Confidence 89999999999999998864
No 489
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.00 E-value=0.13 Score=61.23 Aligned_cols=24 Identities=33% Similarity=0.700 Sum_probs=21.1
Q ss_pred cceEEeCCCCCcHHHHHHHHHHHh
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~l 261 (517)
.-+-|+||+|+|||||+++|.+..
T Consensus 1106 e~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1106 QTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp CEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCc
Confidence 347899999999999999998866
No 490
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.96 E-value=0.07 Score=50.51 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.3
Q ss_pred cceEEeCCCCCcHHHHHHHHHHH
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~ 260 (517)
.-++|.|++|+|||||+.+|.+.
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 35899999999999999999763
No 491
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=91.96 E-value=0.049 Score=48.65 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=9.7
Q ss_pred cceEEeCCCCCcHHHHHHHHHHH
Q 010133 238 RGYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~~ 260 (517)
.-++|.|+||+|||||+.++.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999998643
No 492
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=91.96 E-value=0.18 Score=53.35 Aligned_cols=28 Identities=32% Similarity=0.356 Sum_probs=23.9
Q ss_pred eEEeCCCCCcHHHH-HHHHHHHhCCceEE
Q 010133 240 YLLYGPPGTGKSSM-IAAMANYLGYDIYD 267 (517)
Q Consensus 240 ~LL~GpPGTGKTsl-a~alA~~l~~~i~~ 267 (517)
.++.|++|||||+| ...|++..+.+++.
T Consensus 165 ~~Ifg~~g~GKT~l~l~~I~n~~~~dv~~ 193 (513)
T 3oaa_A 165 ELIIGDRQTGKTALAIDAIINQRDSGIKC 193 (513)
T ss_dssp CEEEESSSSSHHHHHHHHHHTTSSSSCEE
T ss_pred EEeecCCCCCcchHHHHHHHhhccCCceE
Confidence 89999999999999 57899888777644
No 493
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.94 E-value=0.057 Score=55.75 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=21.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l 261 (517)
-+.|.||+|||||||.++||+..
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 48899999999999999999865
No 494
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.90 E-value=0.13 Score=53.54 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHh
Q 010133 239 GYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~l 261 (517)
-+.|.||+|+|||||+++|++..
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 36799999999999999999843
No 495
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.81 E-value=0.075 Score=49.13 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=20.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 010133 239 GYLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 239 g~LL~GpPGTGKTsla~alA~~ 260 (517)
-+++.|+||+|||||+.++++.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 496
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=91.77 E-value=0.082 Score=50.85 Aligned_cols=26 Identities=15% Similarity=0.135 Sum_probs=23.5
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCCce
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGYDI 265 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~~i 265 (517)
+.|+|+||||||++++.++..+|+++
T Consensus 4 i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 4 IFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 67999999999999999999888664
No 497
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.77 E-value=0.077 Score=55.35 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=19.5
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 010133 240 YLLYGPPGTGKSSMIAAMANY 260 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~ 260 (517)
+.|.||+|+|||||+++|++.
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 679999999999999999875
No 498
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.77 E-value=0.067 Score=50.61 Aligned_cols=28 Identities=32% Similarity=0.529 Sum_probs=23.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHHhCCceEEE
Q 010133 240 YLLYGPPGTGKSSMIAAMANYLGYDIYDL 268 (517)
Q Consensus 240 ~LL~GpPGTGKTsla~alA~~l~~~i~~l 268 (517)
+.|.||.|+||||+++.|++. +..++..
T Consensus 23 i~i~G~~GsGKSTl~~~L~~~-~g~v~~~ 50 (230)
T 2vp4_A 23 VLIEGNIGSGKTTYLNHFEKY-KNDICLL 50 (230)
T ss_dssp EEEECSTTSCHHHHHHTTGGG-TTTEEEE
T ss_pred EEEECCCCCCHHHHHHHHHhc-cCCeEEE
Confidence 678999999999999999987 5455443
No 499
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=91.76 E-value=0.085 Score=47.98 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=19.5
Q ss_pred cceEEeCCCCCcHHHHHHHHHH
Q 010133 238 RGYLLYGPPGTGKSSMIAAMAN 259 (517)
Q Consensus 238 rg~LL~GpPGTGKTsla~alA~ 259 (517)
.-+++.|+||+|||+|+.++.+
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 3599999999999999999853
No 500
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.74 E-value=0.073 Score=56.13 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=22.2
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHHh
Q 010133 237 KRGYLLYGPPGTGKSSMIAAMANYL 261 (517)
Q Consensus 237 ~rg~LL~GpPGTGKTsla~alA~~l 261 (517)
..-+.|.||.|+|||||++.||+.+
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3458999999999999999999976
Done!