Query 010134
Match_columns 517
No_of_seqs 385 out of 2557
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 21:27:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010134.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010134hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 4.6E-60 1E-64 515.3 33.3 350 133-508 31-486 (571)
2 PHA02713 hypothetical protein; 100.0 1.3E-53 2.9E-58 465.8 30.2 337 125-507 14-473 (557)
3 PHA02790 Kelch-like protein; P 100.0 6.4E-51 1.4E-55 438.3 31.1 335 133-507 17-456 (480)
4 PHA03098 kelch-like protein; P 100.0 1.3E-48 2.9E-53 426.6 32.1 346 135-508 6-498 (534)
5 KOG4350 Uncharacterized conser 99.9 6.4E-27 1.4E-31 232.3 9.3 198 124-341 32-264 (620)
6 KOG2075 Topoisomerase TOP1-int 99.8 9.1E-20 2E-24 186.0 11.9 187 129-327 107-340 (521)
7 KOG4441 Proteins containing BT 99.7 8.5E-18 1.8E-22 184.0 13.5 133 366-508 333-533 (571)
8 PF00651 BTB: BTB/POZ domain; 99.7 1.3E-17 2.9E-22 143.4 9.6 103 128-235 2-109 (111)
9 PHA02713 hypothetical protein; 99.7 3.2E-16 6.8E-21 171.9 13.3 133 366-508 304-523 (557)
10 smart00225 BTB Broad-Complex, 99.6 1.4E-15 3E-20 124.3 8.9 88 140-230 1-90 (90)
11 PHA03098 kelch-like protein; P 99.6 1.3E-13 2.8E-18 151.0 21.3 252 237-508 72-448 (534)
12 KOG4682 Uncharacterized conser 99.6 1E-14 2.2E-19 146.1 10.6 145 126-279 59-207 (488)
13 KOG4591 Uncharacterized conser 99.5 6.6E-15 1.4E-19 134.7 7.0 139 129-279 59-203 (280)
14 KOG0783 Uncharacterized conser 99.5 2.2E-14 4.7E-19 153.8 5.7 136 137-279 711-852 (1267)
15 PHA02790 Kelch-like protein; P 99.4 9.4E-13 2E-17 142.3 11.3 112 366-490 319-469 (480)
16 TIGR03548 mutarot_permut cycli 99.3 8E-12 1.7E-16 128.3 12.5 132 366-507 73-313 (323)
17 TIGR03547 muta_rot_YjhT mutatr 99.3 2.9E-11 6.2E-16 125.3 13.4 135 366-509 64-333 (346)
18 TIGR03548 mutarot_permut cycli 99.2 6.5E-11 1.4E-15 121.5 13.1 121 377-507 41-233 (323)
19 TIGR03547 muta_rot_YjhT mutatr 99.2 7.7E-11 1.7E-15 122.1 13.1 132 366-507 18-267 (346)
20 PLN02153 epithiospecifier prot 99.2 1.5E-10 3.3E-15 119.7 13.7 132 366-507 33-261 (341)
21 PLN02153 epithiospecifier prot 99.2 1.7E-10 3.6E-15 119.5 13.1 137 366-512 86-329 (341)
22 PLN02193 nitrile-specifier pro 99.2 3E-10 6.5E-15 122.6 14.2 132 366-507 176-387 (470)
23 PRK14131 N-acetylneuraminic ac 99.1 5.7E-10 1.2E-14 117.1 12.9 137 366-508 85-354 (376)
24 KOG4693 Uncharacterized conser 99.0 8.5E-10 1.8E-14 106.0 9.1 134 366-508 89-313 (392)
25 PRK14131 N-acetylneuraminic ac 99.0 3.2E-09 7E-14 111.4 12.0 132 366-507 39-289 (376)
26 PLN02193 nitrile-specifier pro 98.9 6.6E-09 1.4E-13 112.2 13.5 121 377-507 139-338 (470)
27 PF07707 BACK: BTB And C-termi 98.8 2.3E-09 5E-14 90.8 4.3 70 243-321 1-102 (103)
28 smart00875 BACK BTB And C-term 98.4 4.5E-07 9.8E-12 76.0 6.5 67 243-319 1-99 (101)
29 KOG0511 Ankyrin repeat protein 98.4 2.5E-07 5.5E-12 92.8 5.4 159 141-308 295-466 (516)
30 KOG4693 Uncharacterized conser 98.4 1.3E-06 2.9E-11 84.3 9.4 125 375-508 44-261 (392)
31 KOG0783 Uncharacterized conser 98.1 3.6E-06 7.7E-11 91.8 6.3 105 125-231 543-683 (1267)
32 KOG2838 Uncharacterized conser 97.9 5.9E-06 1.3E-10 79.8 3.4 81 124-206 118-200 (401)
33 KOG1987 Speckle-type POZ prote 97.9 8.8E-06 1.9E-10 82.5 3.3 130 146-284 110-244 (297)
34 KOG1230 Protein containing rep 97.8 8.1E-05 1.8E-09 76.2 9.9 130 375-509 98-319 (521)
35 KOG2838 Uncharacterized conser 97.8 5.7E-06 1.2E-10 79.9 1.4 99 147-247 262-397 (401)
36 PF13964 Kelch_6: Kelch motif 97.7 4.8E-05 1E-09 55.6 4.5 46 393-472 1-49 (50)
37 PF01344 Kelch_1: Kelch motif; 97.6 4.9E-05 1.1E-09 54.6 3.1 44 393-470 1-47 (47)
38 KOG0379 Kelch repeat-containin 97.6 0.00052 1.1E-08 74.5 12.4 121 376-506 89-284 (482)
39 KOG0379 Kelch repeat-containin 97.5 0.00056 1.2E-08 74.2 10.8 108 390-507 57-234 (482)
40 KOG4152 Host cell transcriptio 97.5 0.0005 1.1E-08 72.1 9.2 73 366-442 43-149 (830)
41 PF11822 DUF3342: Domain of un 97.4 0.0001 2.2E-09 74.0 3.6 90 146-238 14-104 (317)
42 KOG2716 Polymerase delta-inter 97.3 0.0011 2.3E-08 64.1 8.4 92 141-235 7-103 (230)
43 PF02214 BTB_2: BTB/POZ domain 97.0 0.00079 1.7E-08 56.1 4.0 86 141-229 1-94 (94)
44 KOG3473 RNA polymerase II tran 96.7 0.0063 1.4E-07 50.1 6.7 72 146-221 27-111 (112)
45 PF07646 Kelch_2: Kelch motif; 96.5 0.004 8.7E-08 45.2 4.1 46 393-470 1-49 (49)
46 smart00512 Skp1 Found in Skp1 95.9 0.015 3.3E-07 49.4 5.6 78 141-222 4-104 (104)
47 COG3055 Uncharacterized protei 95.6 0.062 1.3E-06 54.8 9.2 38 375-416 113-155 (381)
48 smart00612 Kelch Kelch domain. 95.4 0.018 3.9E-07 40.5 3.5 31 374-404 14-47 (47)
49 KOG1230 Protein containing rep 95.3 0.052 1.1E-06 56.2 7.6 64 375-442 154-245 (521)
50 PF13418 Kelch_4: Galactose ox 95.2 0.019 4.1E-07 41.4 2.9 45 393-471 1-49 (49)
51 KOG1665 AFH1-interacting prote 94.1 0.11 2.5E-06 49.4 5.9 88 141-231 11-105 (302)
52 KOG0511 Ankyrin repeat protein 93.4 0.053 1.1E-06 55.4 2.7 102 121-227 131-236 (516)
53 KOG2714 SETA binding protein S 93.0 0.28 6.2E-06 51.1 7.2 91 141-235 13-113 (465)
54 KOG1724 SCF ubiquitin ligase, 92.7 0.3 6.4E-06 45.0 6.3 98 146-248 15-140 (162)
55 smart00612 Kelch Kelch domain. 92.5 0.16 3.5E-06 35.5 3.4 16 457-472 18-36 (47)
56 PF03931 Skp1_POZ: Skp1 family 92.4 0.6 1.3E-05 35.6 6.8 53 141-198 3-58 (62)
57 PF13854 Kelch_5: Kelch motif 92.0 0.15 3.2E-06 35.7 2.7 24 390-417 1-24 (42)
58 KOG4152 Host cell transcriptio 92.0 0.25 5.3E-06 52.6 5.3 72 367-442 217-335 (830)
59 COG3055 Uncharacterized protei 90.7 0.35 7.5E-06 49.5 4.8 47 462-508 71-157 (381)
60 PF01344 Kelch_1: Kelch motif; 89.3 0.29 6.2E-06 34.6 2.2 25 470-494 11-43 (47)
61 PF13415 Kelch_3: Galactose ox 88.7 0.56 1.2E-05 33.7 3.4 27 375-401 19-48 (49)
62 PF01466 Skp1: Skp1 family, di 87.3 0.39 8.6E-06 38.5 2.0 44 205-250 12-58 (78)
63 PF13964 Kelch_6: Kelch motif 87.1 0.56 1.2E-05 33.8 2.6 29 366-394 12-50 (50)
64 PF13415 Kelch_3: Galactose ox 86.8 0.69 1.5E-05 33.2 2.9 32 403-438 1-49 (49)
65 KOG1778 CREB binding protein/P 86.4 0.37 8.1E-06 49.2 1.8 135 146-288 36-171 (319)
66 PLN02772 guanylate kinase 84.1 1.3 2.8E-05 46.6 4.5 47 366-416 35-95 (398)
67 COG5201 SKP1 SCF ubiquitin lig 84.0 2.5 5.5E-05 37.0 5.4 89 146-240 12-124 (158)
68 PF03089 RAG2: Recombination a 83.0 3.9 8.5E-05 40.8 7.0 74 426-506 84-173 (337)
69 PF07646 Kelch_2: Kelch motif; 74.6 2.3 5E-05 30.4 2.0 12 495-506 9-20 (49)
70 KOG2715 Uncharacterized conser 72.1 11 0.00024 34.6 6.1 99 134-235 16-120 (210)
71 KOG3840 Uncharaterized conserv 67.0 24 0.00051 35.6 7.6 102 121-223 78-185 (438)
72 KOG2437 Muskelin [Signal trans 62.2 9.2 0.0002 41.1 4.1 22 391-416 258-281 (723)
73 PF11822 DUF3342: Domain of un 52.3 6.6 0.00014 40.0 1.0 50 224-279 60-109 (317)
74 PLN02772 guanylate kinase 46.9 32 0.00069 36.4 5.1 46 393-442 24-89 (398)
75 cd03776 MATH_TRAF6 Tumor Necro 44.5 6.5 0.00014 35.3 -0.3 28 66-93 116-146 (147)
76 cd03774 MATH_SPOP Speckle-type 43.7 7.3 0.00016 34.5 -0.2 32 66-97 102-138 (139)
77 PF00651 BTB: BTB/POZ domain; 42.4 26 0.00057 29.0 3.1 30 240-273 81-110 (111)
78 cd03781 MATH_TRAF4 Tumor Necro 41.2 8.5 0.00018 35.0 -0.1 28 66-93 123-153 (154)
79 PF07250 Glyoxal_oxid_N: Glyox 36.1 56 0.0012 32.2 4.7 35 473-507 80-138 (243)
80 KOG2075 Topoisomerase TOP1-int 35.4 32 0.00069 36.9 3.0 37 237-277 184-220 (521)
81 KOG2723 Uncharacterized conser 34.4 96 0.0021 30.1 5.9 85 146-233 17-106 (221)
82 PF03089 RAG2: Recombination a 33.3 3.5E+02 0.0075 27.5 9.5 37 376-416 132-173 (337)
83 cd03779 MATH_TRAF1 Tumor Necro 32.2 12 0.00026 33.9 -0.7 27 67-93 115-146 (147)
84 PF07707 BACK: BTB And C-termi 31.2 50 0.0011 26.9 3.0 62 211-275 2-75 (103)
85 PF06577 DUF1134: Protein of u 20.7 1E+02 0.0023 28.1 3.1 22 485-506 90-119 (160)
86 KOG4350 Uncharacterized conser 20.2 41 0.00088 35.4 0.5 28 208-235 148-175 (620)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=4.6e-60 Score=515.31 Aligned_cols=350 Identities=20% Similarity=0.338 Sum_probs=315.5
Q ss_pred CCCCCcccEEEEE--EEEEeehhhhcccCHHHHHhhcCCCCCCcceeEEEccCCCCHHHHHHHHhccccceeecCCcccH
Q 010134 133 SSWSMDCSTVVRV--KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPAL 210 (517)
Q Consensus 133 ~~~~~~~DV~l~v--~~f~aHr~ILaa~S~yF~amf~~~~~Es~~~~I~l~~~~~~~~~f~~lL~fiYTg~l~i~~~~~v 210 (517)
+..+.+|||+|.+ ++|+|||.||||+||||++||+++|+|+.+++|+|. ++++.+++.+|+|+|||++.|+. +||
T Consensus 31 r~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~--~v~~~~l~~ll~y~Yt~~i~i~~-~nV 107 (571)
T KOG4441|consen 31 REEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLE--GVDPETLELLLDYAYTGKLEISE-DNV 107 (571)
T ss_pred HHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEe--cCCHHHHHHHHHHhhcceEEech-HhH
Confidence 4455699999999 799999999999999999999999999999999999 89999999999999999999999 999
Q ss_pred HHHHHHHhhcCchhHHHHHHHHhhCCCCChhhHHHHHHhccccccccChHHHHHHHHHHHHHHHHHHhhccHH-------
Q 010134 211 LDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDE------- 283 (517)
Q Consensus 211 ~~lL~aAd~~~v~~L~~~C~~~L~~~~l~~~n~~~~l~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~f~ee------- 283 (517)
++||.+|++|||+.+++.|++||.+ +|+++||+.+..||+.| .|.+|.+.+..|+..||.++.+ ++|
T Consensus 108 q~ll~aA~~lQi~~v~~~C~~fL~~-~l~~~Nclgi~~~a~~~----~~~~L~~~a~~~i~~~F~~v~~-~eefl~L~~~ 181 (571)
T KOG4441|consen 108 QELLEAASLLQIPEVVDACCEFLES-QLDPSNCLGIRRFAELH----SCTELLEVADEYILQHFAEVSK-TEEFLLLSLE 181 (571)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhc----CcHHHHHHHHHHHHHHHHHHhc-cHHhhCCCHH
Confidence 9999999999999999999999999 99999999999999999 6999999999999999999998 655
Q ss_pred -------------------------HHHhcCCChHHHHHHHHhhhcccccCCCCCHHHHHhhcccCCCC--ChhHHHHHH
Q 010134 284 -------------------------WARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLTCNDFD--HDVASKLVL 336 (517)
Q Consensus 284 -------------------------Wi~~~~~~~~~R~~~l~~~Ll~~VRf~lms~~~L~~~~~~~~l~--~~~~~~ll~ 336 (517)
|++| +.+.|.+++ ++|+++||||+|++.+|.+.+...++. +..|+.+|.
T Consensus 182 ~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~---d~~~R~~~~-~~ll~~vr~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ 257 (571)
T KOG4441|consen 182 ELIGLLSSDDLNVDSEEEVFEAAMRWVKH---DFEEREEHL-PALLEAVRLPLLPPQFLVEIVESEPLIKRDSACRDLLD 257 (571)
T ss_pred HHHhhccccCCCcCCHHHHHHHHHHHHhc---CHhhHHHHH-HHHHHhcCccCCCHHHHHHHHhhhhhhccCHHHHHHHH
Confidence 9999 788899999 699999999999999999998887765 568999999
Q ss_pred HHHHhhhccchhhcccccccccccccc-ccccccccccc-------ceEEEecCCCCceee---cCCCccceeeEeeCCe
Q 010134 337 EALFFKAEAPHRQRTLAAEESVTLNRR-FVERAYKYRPV-------KVVEFERPRQQCVVY---LDLKREECENLFPSGR 405 (517)
Q Consensus 337 eAl~y~~~~~~~q~~~~~~~~~p~~R~-~~~~i~v~g~~-------~~v~~y~p~~~~W~~---l~~~r~~~~~a~~~g~ 405 (517)
+|++||.. +..++.+++++++| |+ ..+.++++|+. ..+++|||..+.|.. |+.+|.++++++++|.
T Consensus 258 ea~~~~~~-~~~~~~~~~~~t~~--r~~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~ 334 (571)
T KOG4441|consen 258 EAKKYHLL-PQRRPVMQSPRTRP--RRSVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGK 334 (571)
T ss_pred HHHHHhhC-cccCccccCCCccc--CcCCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCE
Confidence 99999986 56667789999999 84 45778876553 679999999999999 8888999999999999
Q ss_pred eeeeeeeeccce--eccccce---------e-----cccCccceEEEEECCee-------ccCCcccccccCcceeeCc-
Q 010134 406 VYSQAFHLGGQG--FFLSAHC---------N-----MDQQSSFHCFGLFLGMQ-------EKGSVSFAVDYEFAARSKP- 461 (517)
Q Consensus 406 iY~~~fviGG~~--~~~~~~~---------~-----m~~~R~~~~~~~~~g~i-------~~~~l~s~V~~~~~E~ydp- 461 (517)
|| ++||+. ....+.+ | |+++|..+++++++|+| +...+++ | |+|||
T Consensus 335 lY----v~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~s-v-----E~YDp~ 404 (571)
T KOG4441|consen 335 LY----VVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNS-V-----ECYDPV 404 (571)
T ss_pred EE----EEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEecccccccccc-E-----EEecCC
Confidence 99 999984 2333333 4 99999999999999999 3445667 5 99999
Q ss_pred --cceeccCCCcc------------eEEEccccCCC---ceEEEe-e----ccee-------------EeCCEEEEEcCc
Q 010134 462 --TEEFVSKYKGN------------YTFTGGKAVGY---RNLFAI-P----WTSF-------------MADDSLYFINGI 506 (517)
Q Consensus 462 --~W~~v~~l~~~------------iYv~GG~~~~~---~~v~~Y-P----W~~~-------------~~~~~iYviGG~ 506 (517)
+|+.++||+.+ ||++||.++.. ++|+|| | |+.+ +++|+||++||.
T Consensus 405 ~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~ 484 (571)
T KOG4441|consen 405 TNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGF 484 (571)
T ss_pred CCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCc
Confidence 99999999875 99999988765 899999 9 9987 999999999998
Q ss_pred cc
Q 010134 507 LH 508 (517)
Q Consensus 507 ~~ 508 (517)
..
T Consensus 485 ~~ 486 (571)
T KOG4441|consen 485 DG 486 (571)
T ss_pred cC
Confidence 65
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-53 Score=465.81 Aligned_cols=337 Identities=12% Similarity=0.182 Sum_probs=276.5
Q ss_pred hHHhhhhcCCCCCcccEEEEE---EEEEeehhhhcccCHHHHHhhcCCCCCCc-ceeEEEccCCCCHHHHHHHHhccccc
Q 010134 125 DEAANGNESSWSMDCSTVVRV---KTLHISSPILAAKSPFFYKLFSNGMKESE-QRHVALRINASEEAALMELLNFMYSN 200 (517)
Q Consensus 125 ~~l~~l~~~~~~~~~DV~l~v---~~f~aHr~ILaa~S~yF~amf~~~~~Es~-~~~I~l~~~~~~~~~f~~lL~fiYTg 200 (517)
..|.++... +.+|||+|.| ++|+|||+||||+|+||++||+++|+|+. +++|+|+ ++++++|+.+|+|+|||
T Consensus 14 ~~l~~lr~~--~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~--~v~~~~~~~ll~y~Yt~ 89 (557)
T PHA02713 14 SNISNLLDD--DILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQ--MFDKDAVKNIVQYLYNR 89 (557)
T ss_pred HHHHHHHhC--CCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEec--cCCHHHHHHHHHHhcCC
Confidence 455555555 4689999998 48999999999999999999999999874 7899999 99999999999999999
Q ss_pred eeecCCcccHHHHHHHHhhcCchhHHHHHHHHhhCCCCChhhHHHHHHhccccccccChHHHHHHHHHHHHHHHHHHhhc
Q 010134 201 TLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKF 280 (517)
Q Consensus 201 ~l~i~~~~~v~~lL~aAd~~~v~~L~~~C~~~L~~~~l~~~n~~~~l~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~f 280 (517)
+ ++. +|+++||.||++||++.|++.|++||.+ +|+++||+.++.+|..+ .+.+|.++|.+||++||.+|++
T Consensus 90 ~--i~~-~nv~~ll~aA~~lqi~~l~~~C~~~l~~-~l~~~NCl~i~~~~~~~----~~~~L~~~a~~~i~~~f~~v~~- 160 (557)
T PHA02713 90 H--ISS-MNVIDVLKCADYLLIDDLVTDCESYIKD-YTNHDTCIYMYHRLYEM----SHIPIVKYIKRMLMSNIPTLIT- 160 (557)
T ss_pred C--CCH-HHHHHHHHHHHHHCHHHHHHHHHHHHHh-hCCccchHHHHHHHHhc----cchHHHHHHHHHHHHHHHHHhC-
Confidence 7 577 8999999999999999999999999999 99999999999987777 4778999999999999999987
Q ss_pred cHH---------------------------------HHHhcCCChHHHHHHHHhhhcccccCCCCCHHHHHhhcccCCCC
Q 010134 281 QDE---------------------------------WARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLTCNDFD 327 (517)
Q Consensus 281 ~ee---------------------------------Wi~~~~~~~~~R~~~l~~~Ll~~VRf~lms~~~L~~~~~~~~l~ 327 (517)
++| |++| +.+.|.+ + .+||++||||+|++.++.. +.+++++
T Consensus 161 ~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~---d~~~r~~-~-~~ll~~VR~~~l~~~~~~~-~~~~~~i 234 (557)
T PHA02713 161 TDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEY---NYITEEQ-L-LCILSCIDIQNLDKKSRLL-LYSNKTI 234 (557)
T ss_pred ChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhc---CHHHHHH-H-hhhHhhhhHhhcchhhhhh-hcchHHH
Confidence 443 9999 7766654 6 4999999999999998774 4344443
Q ss_pred --ChhHHHHHHHHHHhhhccchhhcccccccccccccccccccccccc-----cceEEEecCCCCceee---cCCCccce
Q 010134 328 --HDVASKLVLEALFFKAEAPHRQRTLAAEESVTLNRRFVERAYKYRP-----VKVVEFERPRQQCVVY---LDLKREEC 397 (517)
Q Consensus 328 --~~~~~~ll~eAl~y~~~~~~~q~~~~~~~~~p~~R~~~~~i~v~g~-----~~~v~~y~p~~~~W~~---l~~~r~~~ 397 (517)
+..|.++|.+|+.++. +.| |. ..+++.++ ...+++|||..+.|.. ||.+|..+
T Consensus 235 ~~~~~c~~~l~~a~~~~~-------------~~~--r~--~~l~~~~g~~~~~~~~v~~yd~~~~~W~~l~~mp~~r~~~ 297 (557)
T PHA02713 235 NMYPSCIQFLLDNKQNRN-------------IIP--RQ--LCLVCHDTKYNVCNPCILVYNINTMEYSVISTIPNHIINY 297 (557)
T ss_pred HhhHHHHHHHhhhhhhcc-------------cCC--cc--eEEEEecCccccCCCCEEEEeCCCCeEEECCCCCccccce
Confidence 5678888888865322 223 43 23443332 1468899999999998 77788889
Q ss_pred eeEeeCCeeeeeeeeeccce--ec---------ccccee-----cccCccceEEEEECCee---cc----CCcccccccC
Q 010134 398 ENLFPSGRVYSQAFHLGGQG--FF---------LSAHCN-----MDQQSSFHCFGLFLGMQ---EK----GSVSFAVDYE 454 (517)
Q Consensus 398 ~~a~~~g~iY~~~fviGG~~--~~---------~~~~~~-----m~~~R~~~~~~~~~g~i---~~----~~l~s~V~~~ 454 (517)
++++++|+|| ++||.. .. .....| |+++|..+++++++|+| |. ..+++ |
T Consensus 298 ~~a~l~~~IY----viGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~s-v--- 369 (557)
T PHA02713 298 ASAIVDNEII----IAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERT-I--- 369 (557)
T ss_pred EEEEECCEEE----EEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCce-E---
Confidence 9999999999 999962 11 122335 99999999999999999 21 12345 5
Q ss_pred cceeeCc---cceeccCCCcc------------eEEEccccCC--------------------CceEEEe-e----ccee
Q 010134 455 FAARSKP---TEEFVSKYKGN------------YTFTGGKAVG--------------------YRNLFAI-P----WTSF 494 (517)
Q Consensus 455 ~~E~ydp---~W~~v~~l~~~------------iYv~GG~~~~--------------------~~~v~~Y-P----W~~~ 494 (517)
|+||| +|+.++|||.+ ||++||.++. .+++++| | |+.+
T Consensus 370 --e~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v 447 (557)
T PHA02713 370 --ECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL 447 (557)
T ss_pred --EEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeec
Confidence 99999 89999999976 9999997631 2679999 9 9876
Q ss_pred -------------EeCCEEEEEcCcc
Q 010134 495 -------------MADDSLYFINGIL 507 (517)
Q Consensus 495 -------------~~~~~iYviGG~~ 507 (517)
+++|+|||+||..
T Consensus 448 ~~m~~~r~~~~~~~~~~~IYv~GG~~ 473 (557)
T PHA02713 448 PNFWTGTIRPGVVSHKDDIYVVCDIK 473 (557)
T ss_pred CCCCcccccCcEEEECCEEEEEeCCC
Confidence 8899999999964
No 3
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=6.4e-51 Score=438.25 Aligned_cols=335 Identities=13% Similarity=0.155 Sum_probs=261.5
Q ss_pred CCCCCcccEEEEE-EEEEeehhhhcccCHHHHHhhcCCCCCCcceeEEEccCCCCHHHHHHHHhccccceeecCCcccHH
Q 010134 133 SSWSMDCSTVVRV-KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALL 211 (517)
Q Consensus 133 ~~~~~~~DV~l~v-~~f~aHr~ILaa~S~yF~amf~~~~~Es~~~~I~l~~~~~~~~~f~~lL~fiYTg~l~i~~~~~v~ 211 (517)
+..+.+|||++.+ ++|+|||+||||+||||++||+++|+|+.+ +|.+...++++++|+.||+|+|||++.++. +||+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~it~-~nV~ 94 (480)
T PHA02790 17 SMTKKFKTIIEAIGGNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVYIDS-HNVV 94 (480)
T ss_pred HhhhhhceEEEEcCcEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEEEec-ccHH
Confidence 3345689999999 899999999999999999999999999965 566532279999999999999999999999 9999
Q ss_pred HHHHHHhhcCchhHHHHHHHHhhCCCCChhhHHHHHHhccccccccChHHHHHHHHHHHHHHHHHHhhcc--HH------
Q 010134 212 DVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQ--DE------ 283 (517)
Q Consensus 212 ~lL~aAd~~~v~~L~~~C~~~L~~~~l~~~n~~~~l~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~f~--ee------ 283 (517)
+||.||++||++.+++.|++||.+ +|+++||+.++.+|+.| +|++|.++|.+||.+||.+|.+ + +|
T Consensus 95 ~ll~aA~~Lqi~~v~~~C~~fL~~-~l~~~NCl~i~~~A~~y----~~~~L~~~a~~fi~~nF~~v~~-~~~~ef~~L~~ 168 (480)
T PHA02790 95 NLLRASILTSVEFIIYTCINFILR-DFRKEYCVECYMMGIEY----GLSNLLCHTKDFIAKHFLELED-DIIDNFDYLSM 168 (480)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHh-hCCcchHHHHHHHHHHh----CHHHHHHHHHHHHHHhHHHHhc-ccchhhhhCCH
Confidence 999999999999999999999999 99999999999999999 6999999999999999999986 3 22
Q ss_pred -----------------------HHHhcCCChHHHHHHHHhhhccc-ccCCCCCHHHHHhhcccCCCCChhHHHHHHHHH
Q 010134 284 -----------------------WARAQYPRVEERREVLGSRLARF-IRFPHMTCRKLKKVLTCNDFDHDVASKLVLEAL 339 (517)
Q Consensus 284 -----------------------Wi~~~~~~~~~R~~~l~~~Ll~~-VRf~lms~~~L~~~~~~~~l~~~~~~~ll~eAl 339 (517)
|++| + ..|...+ .+++++ ||+++|++..+.++ ..++.++.
T Consensus 169 ~~lLssd~L~v~~Ee~V~eav~~Wl~~---~-~~~~~~l-~~~vr~~ir~~~l~~~~l~~~-----------~~~~~~~~ 232 (480)
T PHA02790 169 KLILESDELNVPDEDYVVDFVIKWYMK---R-RNRLGNL-LLLIKNVIRSNYLSPRGINNV-----------KWILDCTK 232 (480)
T ss_pred HHhcccccCCCccHHHHHHHHHHHHHh---h-HHHHHHH-HHHHHhcCChhhCCHHHHHHH-----------HHHHHHHH
Confidence 9998 3 3455555 366666 89999998887542 23344444
Q ss_pred Hhhhccchhh----ccc-ccccc---c---ccc--cccccccccccc------cceEEEecCCCCceee---cCCCccce
Q 010134 340 FFKAEAPHRQ----RTL-AAEES---V---TLN--RRFVERAYKYRP------VKVVEFERPRQQCVVY---LDLKREEC 397 (517)
Q Consensus 340 ~y~~~~~~~q----~~~-~~~~~---~---p~~--R~~~~~i~v~g~------~~~v~~y~p~~~~W~~---l~~~r~~~ 397 (517)
.++..+..+. +.. ..... . ... ....+.+|+.|+ .+.+++|||..++|.. |+.+|..+
T Consensus 233 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~ 312 (480)
T PHA02790 233 IFHCDKQPRKSYKYPFIEYPMNMDQIIDIFHMCTSTHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA 312 (480)
T ss_pred HhhccccccccccccccccCCcccceeeccCCcceEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc
Confidence 4332110000 000 00000 0 000 012256777655 2578999999999998 67789889
Q ss_pred eeEeeCCeeeeeeeeecccee-------cccccee-----cccCccceEEEEECCee---cc--CCcccccccCcceeeC
Q 010134 398 ENLFPSGRVYSQAFHLGGQGF-------FLSAHCN-----MDQQSSFHCFGLFLGMQ---EK--GSVSFAVDYEFAARSK 460 (517)
Q Consensus 398 ~~a~~~g~iY~~~fviGG~~~-------~~~~~~~-----m~~~R~~~~~~~~~g~i---~~--~~l~s~V~~~~~E~yd 460 (517)
++++++|+|| ++||... ......| |+++|..+++++++|+| |. +..++ | |+||
T Consensus 313 ~~v~~~~~iY----viGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~-v-----e~yd 382 (480)
T PHA02790 313 SGVPANNKLY----VVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTT-T-----EYLL 382 (480)
T ss_pred eEEEECCEEE----EECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCcc-E-----EEEe
Confidence 9999999999 9999621 1223345 99999999999999999 21 12234 5 9999
Q ss_pred c---cceeccCCCcc------------eEEEccccCCCceEEEe-e----ccee-------------EeCCEEEEEcCcc
Q 010134 461 P---TEEFVSKYKGN------------YTFTGGKAVGYRNLFAI-P----WTSF-------------MADDSLYFINGIL 507 (517)
Q Consensus 461 p---~W~~v~~l~~~------------iYv~GG~~~~~~~v~~Y-P----W~~~-------------~~~~~iYviGG~~ 507 (517)
| +|+.++||+.+ |||+||. +++| | |+.+ +++|+|||+||..
T Consensus 383 p~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~------~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~ 456 (480)
T PHA02790 383 PNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRN------AEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFY 456 (480)
T ss_pred CCCCEEEeCCCCCCccccceEEEECCEEEEECCc------eEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcC
Confidence 9 99999999876 9999973 6788 8 9876 8999999999964
No 4
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1.3e-48 Score=426.64 Aligned_cols=346 Identities=14% Similarity=0.202 Sum_probs=278.9
Q ss_pred CCCcccEEEEE----EEEEeehhhhcccCHHHHHhhcCCCCCCcceeEEEccCCCCHHHHHHHHhccccceeecCCcccH
Q 010134 135 WSMDCSTVVRV----KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPAL 210 (517)
Q Consensus 135 ~~~~~DV~l~v----~~f~aHr~ILaa~S~yF~amf~~~~~Es~~~~I~l~~~~~~~~~f~~lL~fiYTg~l~i~~~~~v 210 (517)
.+.+|||+|.+ ++|+|||.|||++|+||++||+++|+ +.+|+|+ + ++++|+.+|+|+|||++.++. +++
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~--~-~~~~~~~~l~y~Ytg~~~i~~-~~~ 78 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLN--I-DYDSFNEVIKYIYTGKINITS-NNV 78 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEec--C-CHHHHHHHHHHhcCCceEEcH-HHH
Confidence 45689999997 69999999999999999999999998 5779999 7 999999999999999999999 899
Q ss_pred HHHHHHHhhcCchhHHHHHHHHhhCCCCChhhHHHHHHhccccccccChHHHHHHHHHHHHHHHHHHhhccHH-------
Q 010134 211 LDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDE------- 283 (517)
Q Consensus 211 ~~lL~aAd~~~v~~L~~~C~~~L~~~~l~~~n~~~~l~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~f~ee------- 283 (517)
++||.+|++||++.|++.|++||.+ .|+.+||+.++.+|+.| ++.+|+++|.+||++||.++.+ +++
T Consensus 79 ~~ll~~A~~l~~~~l~~~C~~~l~~-~l~~~nc~~~~~~a~~~----~~~~L~~~~~~~i~~nf~~v~~-~~~f~~l~~~ 152 (534)
T PHA03098 79 KDILSIANYLIIDFLINLCINYIIK-IIDDNNCIDIYRFSFFY----GCKKLYSAAYNYIRNNIELIYN-DPDFIYLSKN 152 (534)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHH-hCCHhHHHHHHHHHHHc----CcHHHHHHHHHHHHHHHHHHhc-CchhhcCCHH
Confidence 9999999999999999999999999 99999999999999999 6899999999999999999987 433
Q ss_pred -------------------------HHHhcCCChHHHHHHHHhhhcccccCCCCCHHHHHhhcc------cCCCC-ChhH
Q 010134 284 -------------------------WARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLT------CNDFD-HDVA 331 (517)
Q Consensus 284 -------------------------Wi~~~~~~~~~R~~~l~~~Ll~~VRf~lms~~~L~~~~~------~~~l~-~~~~ 331 (517)
|++| +.++|.+++ ++||++|||++|++++|.+++. ++.++ +..|
T Consensus 153 ~l~~ll~~~~L~v~~E~~v~~av~~W~~~---~~~~r~~~~-~~ll~~vR~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 228 (534)
T PHA03098 153 ELIKILSDDKLNVSSEDVVLEIIIKWLTS---KKNNKYKDI-CLILKVLRITFLSEEGIKKLKRWKLRIKKKKIVFNKRC 228 (534)
T ss_pred HHHHHhcCCCcCcCCHHHHHHHHHHHHhc---ChhhhHhHH-HHHHhhccccccCHHHHHHHHHHHhhcCCcceeccccc
Confidence 9999 788899999 6999999999999999998764 44444 4567
Q ss_pred HHHHHHHHHhhhcc-chhhc----cc---------------cc--c-----ccccccccc------cccccccccc----
Q 010134 332 SKLVLEALFFKAEA-PHRQR----TL---------------AA--E-----ESVTLNRRF------VERAYKYRPV---- 374 (517)
Q Consensus 332 ~~ll~eAl~y~~~~-~~~q~----~~---------------~~--~-----~~~p~~R~~------~~~i~v~g~~---- 374 (517)
...+.++..++... +.... +. .. . ...| .+.. .+.+|+.|+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~lyv~GG~~~~~ 307 (534)
T PHA03098 229 IKIIYSKKYNLNKILPRSSTFGSIIYIHITMSIFTYNYITNYSPLSEINTIIDIH-YVYCFGSVVLNNVIYFIGGMNKNN 307 (534)
T ss_pred hHHHHHHHhcccCCCcCccCCCcceEeecccchhhceeeecchhhhhcccccCcc-ccccceEEEECCEEEEECCCcCCC
Confidence 77777776653210 00000 00 00 0 0011 0111 1456665542
Q ss_pred ---ceEEEecCCCCceee---cCCCccceeeEeeCCeeeeeeeeeccce----------ecccccee-----cccCccce
Q 010134 375 ---KVVEFERPRQQCVVY---LDLKREECENLFPSGRVYSQAFHLGGQG----------FFLSAHCN-----MDQQSSFH 433 (517)
Q Consensus 375 ---~~v~~y~p~~~~W~~---l~~~r~~~~~a~~~g~iY~~~fviGG~~----------~~~~~~~~-----m~~~R~~~ 433 (517)
+.+..||+.+++|.. |+.+|..+++++++|+|| ++||.. +......| |+.+|..+
T Consensus 308 ~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~ly----v~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~ 383 (534)
T PHA03098 308 LSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIY----VIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP 383 (534)
T ss_pred CeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEE----EEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc
Confidence 468899999999988 566899999999999999 999972 11223345 89999999
Q ss_pred EEEEECCee--ccC------CcccccccCcceeeCc---cceeccCCCcc------------eEEEccccCC-----Cce
Q 010134 434 CFGLFLGMQ--EKG------SVSFAVDYEFAARSKP---TEEFVSKYKGN------------YTFTGGKAVG-----YRN 485 (517)
Q Consensus 434 ~~~~~~g~i--~~~------~l~s~V~~~~~E~ydp---~W~~v~~l~~~------------iYv~GG~~~~-----~~~ 485 (517)
++++++|++ -.| .+++ | |+||| +|+.++|||.+ ||++||.+.. .+.
T Consensus 384 ~~~~~~~~iYv~GG~~~~~~~~~~-v-----~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 457 (534)
T PHA03098 384 CVVNVNNLIYVIGGISKNDELLKT-V-----ECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNI 457 (534)
T ss_pred eEEEECCEEEEECCcCCCCcccce-E-----EEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccce
Confidence 999999998 111 2344 4 99999 89999999865 9999997532 256
Q ss_pred EEEe-e----ccee-------------EeCCEEEEEcCccc
Q 010134 486 LFAI-P----WTSF-------------MADDSLYFINGILH 508 (517)
Q Consensus 486 v~~Y-P----W~~~-------------~~~~~iYviGG~~~ 508 (517)
+++| | |+.+ +++|+|||+||...
T Consensus 458 v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~ 498 (534)
T PHA03098 458 VESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKY 498 (534)
T ss_pred EEEecCCCCceeeCCCCCcccccceEEEECCEEEEEcCCcC
Confidence 9999 8 9876 78999999999753
No 5
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.94 E-value=6.4e-27 Score=232.30 Aligned_cols=198 Identities=21% Similarity=0.312 Sum_probs=172.8
Q ss_pred hhHHhhhhcCCCCCcccEEEEE--EEEEeehhhhcccCHHHHHhhcCCCCCCcceeEEEccCCCCHHHHHHHHhccccce
Q 010134 124 GDEAANGNESSWSMDCSTVVRV--KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNT 201 (517)
Q Consensus 124 ~~~l~~l~~~~~~~~~DV~l~v--~~f~aHr~ILaa~S~yF~amf~~~~~Es~~~~I~l~~~~~~~~~f~~lL~fiYTg~ 201 (517)
+++++.++.+.+ .+||+|+| ++|+|||+|||+||.|||||+.++|.|+.+..|.|+ +-..++|+++|+|||||+
T Consensus 32 S~~~~~l~~~e~--y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq--~t~~eAF~~lLrYiYtg~ 107 (620)
T KOG4350|consen 32 SQSFDELFTSED--YSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQ--ETNSEAFRALLRYIYTGK 107 (620)
T ss_pred hHHHHHHhhcCc--ccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccc--cccHHHHHHHHHHHhhcc
Confidence 678888888876 69999999 689999999999999999999999999999999999 788999999999999999
Q ss_pred eecCC--cccHHHHHHHHhhcCchhHHHHHHHHhhCCCCChhhHHHHHHhccccccccChHHHHHHHHHHHHHHHHHHhh
Q 010134 202 LSTTA--APALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTK 279 (517)
Q Consensus 202 l~i~~--~~~v~~lL~aAd~~~v~~L~~~C~~~L~~~~l~~~n~~~~l~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~ 279 (517)
+.++. .+.+.+.|.+|++|++..|.....+||++ .+..+|++.++..|..| ++++|.+.|..|+-+|-.+++.
T Consensus 108 ~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~-iL~~~NvCmifdaA~ly----~l~~Lt~~C~mfmDrnA~~lL~ 182 (620)
T KOG4350|consen 108 IDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKE-ILKNENVCMIFDAAYLY----QLTDLTDYCMMFMDRNADQLLE 182 (620)
T ss_pred eecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHcccceeeeeeHHHHh----cchHHHHHHHHHHhcCHHhhhc
Confidence 98775 25688999999999999999999999999 99999999999999999 5899999999999999888876
Q ss_pred ccHH-------------------------------HHHhcCCChHHHHHHHHhhhcccccCCCCCHHHHHhhcccCCCCC
Q 010134 280 FQDE-------------------------------WARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLTCNDFDH 328 (517)
Q Consensus 280 f~ee-------------------------------Wi~~~~~~~~~R~~~l~~~Ll~~VRf~lms~~~L~~~~~~~~l~~ 328 (517)
.+. |-++| + .+.. +.|++.||+|+|+..+|.+++....+.+
T Consensus 183 -~~sFn~LSk~sL~e~l~RDsFfApE~~IFlAv~~W~~~N---s---ke~~-k~~~~~VRLPLm~lteLLnvVRPsGlls 254 (620)
T KOG4350|consen 183 -DPSFNRLSKDSLKELLARDSFFAPELKIFLAVRSWHQNN---S---KEAS-KVLLELVRLPLMTLTELLNVVRPSGLLS 254 (620)
T ss_pred -CcchhhhhHHHHHHHHhhhcccchHHHHHHHHHHHHhcC---c---hhhH-HHHHHHHhhhhccHHHHHhccCcccCcC
Confidence 221 88884 2 2334 5889999999999999999999888775
Q ss_pred hhHHHHHHHHHHh
Q 010134 329 DVASKLVLEALFF 341 (517)
Q Consensus 329 ~~~~~ll~eAl~y 341 (517)
+ +.|.+|+.-
T Consensus 255 p---D~iLDAI~v 264 (620)
T KOG4350|consen 255 P---DTILDAIEV 264 (620)
T ss_pred H---HHHHHHHHh
Confidence 3 234555543
No 6
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.81 E-value=9.1e-20 Score=185.96 Aligned_cols=187 Identities=23% Similarity=0.369 Sum_probs=160.8
Q ss_pred hhhcCCCCCcccEEEEE-------EEEEeehhhhcccCHHHHHhhcCCCCCCcceeEEEccCCCCHHHHHHHHhccccce
Q 010134 129 NGNESSWSMDCSTVVRV-------KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNT 201 (517)
Q Consensus 129 ~l~~~~~~~~~DV~l~v-------~~f~aHr~ILaa~S~yF~amf~~~~~Es~~~~I~l~~~~~~~~~f~~lL~fiYTg~ 201 (517)
.++.+.. .+|+.|.| +.|||||.|||..|.+|.+||++++.|+...+|.++ |+++.+|..+|+|||++.
T Consensus 107 ~l~~n~~--~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lp--dvepaaFl~~L~flYsde 182 (521)
T KOG2075|consen 107 ALFNNEL--LADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLP--DVEPAAFLAFLRFLYSDE 182 (521)
T ss_pred hhccCcc--cceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecC--CcChhHhHHHHHHHhcch
Confidence 4555554 68888888 379999999999999999999999999988899999 999999999999999999
Q ss_pred eecCCcccHHHHHHHHhhcCchhHHHHHHHHhhCCCCChhhHHHHHHh-ccccccccChHHHHHHHHHHHHHHHHHHhhc
Q 010134 202 LSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLEL-PSSVLMGEAVQPLTDAARQYLASRYKDMTKF 280 (517)
Q Consensus 202 l~i~~~~~v~~lL~aAd~~~v~~L~~~C~~~L~~~~l~~~n~~~~l~l-A~~~~~a~~~~~L~~~~~~fi~~nf~~v~~f 280 (517)
+.+.. +|+..+|.+|++|.++.|.+.|.+||++ ++.+.|.+..+-- |.++ .-++|.+.|.+-|..+|.+...
T Consensus 183 v~~~~-dtvi~tl~~AkKY~VpaLer~CVkflr~-~l~~~naf~~L~q~A~lf----~ep~Li~~c~e~id~~~~~al~- 255 (521)
T KOG2075|consen 183 VKLAA-DTVITTLYAAKKYLVPALERQCVKFLRK-NLMADNAFLELFQRAKLF----DEPSLISICLEVIDKSFEDALT- 255 (521)
T ss_pred hhhhH-HHHHHHHHHHHHhhhHHHHHHHHHHHHH-hcCChHHHHHHHHHHHhh----cCHHHHHHHHHHhhhHHHhhhC-
Confidence 99999 9999999999999999999999999999 8888887766665 7776 4689999999999999988765
Q ss_pred cHH---------------------------------HHHhcC------CChHHHHHHHHhhhcccccCCCCCHHHHHhhc
Q 010134 281 QDE---------------------------------WARAQY------PRVEERREVLGSRLARFIRFPHMTCRKLKKVL 321 (517)
Q Consensus 281 ~ee---------------------------------Wi~~~~------~~~~~R~~~l~~~Ll~~VRf~lms~~~L~~~~ 321 (517)
.|- |+...+ .+.+++++.+ .+.+..||||+|+.+++..-+
T Consensus 256 ~EGf~did~~~dt~~evl~r~~l~~~e~~lfeA~lkw~~~e~~rs~~~~~~~~~~~vl-~~~l~lirfp~m~~Eefa~~~ 334 (521)
T KOG2075|consen 256 PEGFCDIDSTRDTYEEVLRRDTLEAREFRLFEAALKWAEAECQRSGGPVNGQNKRKVL-GRALSLIRFPFMNIEEFARGV 334 (521)
T ss_pred ccceeehhhHHHHHHHHHhhcccchhHHHHHHHHHhhccCcchhhcCCCCccchhhhh-hheeeeecccccchhhhccCc
Confidence 221 876543 2566778888 499999999999999988767
Q ss_pred ccCCCC
Q 010134 322 TCNDFD 327 (517)
Q Consensus 322 ~~~~l~ 327 (517)
++..+.
T Consensus 335 e~sgIl 340 (521)
T KOG2075|consen 335 EQSGIL 340 (521)
T ss_pred cccCCc
Confidence 666655
No 7
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.74 E-value=8.5e-18 Score=183.98 Aligned_cols=133 Identities=22% Similarity=0.283 Sum_probs=110.4
Q ss_pred ccccccccc-------ceEEEecCCCCceee---cCCCccceeeEeeCCeeeeeeeeeccc-e--eccccce-------e
Q 010134 366 ERAYKYRPV-------KVVEFERPRQQCVVY---LDLKREECENLFPSGRVYSQAFHLGGQ-G--FFLSAHC-------N 425 (517)
Q Consensus 366 ~~i~v~g~~-------~~v~~y~p~~~~W~~---l~~~r~~~~~a~~~g~iY~~~fviGG~-~--~~~~~~~-------~ 425 (517)
+.+|+.|+. +.+++|||..+.|.. |..+|..+++++++|.|| ++||+ | ...+.+| |
T Consensus 333 ~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iY----avGG~dg~~~l~svE~YDp~~~~W 408 (571)
T KOG4441|consen 333 GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLY----AVGGFDGEKSLNSVECYDPVTNKW 408 (571)
T ss_pred CEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEE----EEeccccccccccEEEecCCCCcc
Confidence 457775543 679999999999999 778899999999999999 99998 2 2223334 4
Q ss_pred -----cccCccceEEEEECCee---c----cC-CcccccccCcceeeCc---cceeccCCCcc------------eEEEc
Q 010134 426 -----MDQQSSFHCFGLFLGMQ---E----KG-SVSFAVDYEFAARSKP---TEEFVSKYKGN------------YTFTG 477 (517)
Q Consensus 426 -----m~~~R~~~~~~~~~g~i---~----~~-~l~s~V~~~~~E~ydp---~W~~v~~l~~~------------iYv~G 477 (517)
|.++|..|++++++|+| + .. .+.+ | |+||| +|+.++||+.+ ||++|
T Consensus 409 ~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~s-v-----e~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvG 482 (571)
T KOG4441|consen 409 TPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNS-V-----ECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVG 482 (571)
T ss_pred cccCCCCcceeeeEEEEECCEEEEEcCcCCCccccce-E-----EEEcCCCCceeecCCcccccccceEEEECCEEEEEC
Confidence 99999999999999999 1 11 4566 5 99999 99999999987 99999
Q ss_pred cccCCC--ceEEEe-e----ccee-------------EeCCEEEEEcCccc
Q 010134 478 GKAVGY--RNLFAI-P----WTSF-------------MADDSLYFINGILH 508 (517)
Q Consensus 478 G~~~~~--~~v~~Y-P----W~~~-------------~~~~~iYviGG~~~ 508 (517)
|+++.. ++||+| | |+.+ +++++||++||...
T Consensus 483 G~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~ 533 (571)
T KOG4441|consen 483 GFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDG 533 (571)
T ss_pred CccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccC
Confidence 999843 789999 8 9887 88999999999643
No 8
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.73 E-value=1.3e-17 Score=143.37 Aligned_cols=103 Identities=27% Similarity=0.467 Sum_probs=90.5
Q ss_pred hhhhcCCCCCcccEEEEE---EEEEeehhhhcccCHHHHHhhcCC-CCCCcceeEEEccCCCCHHHHHHHHhccccceee
Q 010134 128 ANGNESSWSMDCSTVVRV---KTLHISSPILAAKSPFFYKLFSNG-MKESEQRHVALRINASEEAALMELLNFMYSNTLS 203 (517)
Q Consensus 128 ~~l~~~~~~~~~DV~l~v---~~f~aHr~ILaa~S~yF~amf~~~-~~Es~~~~I~l~~~~~~~~~f~~lL~fiYTg~l~ 203 (517)
.++++++. ++|++|.+ ++|+|||.||+++|+||+.||.++ +.+....+|.++ ++++++|+.+|+|+|+|++.
T Consensus 2 ~~~~~~~~--~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~l~~~Y~~~~~ 77 (111)
T PF00651_consen 2 NDLFNSNE--FSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLP--DVSPEAFEAFLEYMYTGEIE 77 (111)
T ss_dssp HHHHHHTT--S--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEET--TSCHHHHHHHHHHHHHSEEE
T ss_pred hHHHcCCC--CCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccc--cccccccccccccccCCccc
Confidence 34555554 69999999 599999999999999999999998 677776788888 99999999999999999999
Q ss_pred cC-CcccHHHHHHHHhhcCchhHHHHHHHHhhC
Q 010134 204 TT-AAPALLDVLMAADKFEVASCMRYCSRLLRN 235 (517)
Q Consensus 204 i~-~~~~v~~lL~aAd~~~v~~L~~~C~~~L~~ 235 (517)
++ . +++.+++.+|++|+++.|+..|+++|.+
T Consensus 78 ~~~~-~~~~~ll~lA~~~~~~~L~~~~~~~l~~ 109 (111)
T PF00651_consen 78 INSD-ENVEELLELADKLQIPELKKACEKFLQE 109 (111)
T ss_dssp EE-T-TTHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CCHH-HHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 98 7 8999999999999999999999999976
No 9
>PHA02713 hypothetical protein; Provisional
Probab=99.67 E-value=3.2e-16 Score=171.92 Aligned_cols=133 Identities=13% Similarity=0.046 Sum_probs=106.2
Q ss_pred ccccccccc-------ceEEEecCCCCceee---cCCCccceeeEeeCCeeeeeeeeeccc-ee---------cccccee
Q 010134 366 ERAYKYRPV-------KVVEFERPRQQCVVY---LDLKREECENLFPSGRVYSQAFHLGGQ-GF---------FLSAHCN 425 (517)
Q Consensus 366 ~~i~v~g~~-------~~v~~y~p~~~~W~~---l~~~r~~~~~a~~~g~iY~~~fviGG~-~~---------~~~~~~~ 425 (517)
+.||+.|+. +.+++|||..+.|.. |+.+|..+++++++|+|| ++||. +. ......|
T Consensus 304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IY----viGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIY----AIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEE----EECCcCCCCCCceEEEEECCCCeE
Confidence 567776552 568999999999988 677899999999999999 99997 21 1222345
Q ss_pred -----cccCccceEEEEECCee---cc-C---------------------CcccccccCcceeeCc---cceeccCCCcc
Q 010134 426 -----MDQQSSFHCFGLFLGMQ---EK-G---------------------SVSFAVDYEFAARSKP---TEEFVSKYKGN 472 (517)
Q Consensus 426 -----m~~~R~~~~~~~~~g~i---~~-~---------------------~l~s~V~~~~~E~ydp---~W~~v~~l~~~ 472 (517)
|+++|..+++++++|+| +. . .+++ | |+||| +|+.++||+.+
T Consensus 380 ~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~-v-----e~YDP~td~W~~v~~m~~~ 453 (557)
T PHA02713 380 KMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNK-V-----IRYDTVNNIWETLPNFWTG 453 (557)
T ss_pred EECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccce-E-----EEECCCCCeEeecCCCCcc
Confidence 99999999999999999 21 1 1233 4 99999 99999999875
Q ss_pred ------------eEEEccccCCC---ceEEEe-e-----ccee-------------EeCCEEEEEcCccc
Q 010134 473 ------------YTFTGGKAVGY---RNLFAI-P-----WTSF-------------MADDSLYFINGILH 508 (517)
Q Consensus 473 ------------iYv~GG~~~~~---~~v~~Y-P-----W~~~-------------~~~~~iYviGG~~~ 508 (517)
|||+||.++.. +.+++| | |+.+ +++|+|||+||...
T Consensus 454 r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~ 523 (557)
T PHA02713 454 TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYES 523 (557)
T ss_pred cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEECCEEEEEeeecc
Confidence 99999987433 468999 8 8765 89999999999654
No 10
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.62 E-value=1.4e-15 Score=124.25 Aligned_cols=88 Identities=27% Similarity=0.485 Sum_probs=82.6
Q ss_pred cEEEEE--EEEEeehhhhcccCHHHHHhhcCCCCCCcceeEEEccCCCCHHHHHHHHhccccceeecCCcccHHHHHHHH
Q 010134 140 STVVRV--KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDVLMAA 217 (517)
Q Consensus 140 DV~l~v--~~f~aHr~ILaa~S~yF~amf~~~~~Es~~~~I~l~~~~~~~~~f~~lL~fiYTg~l~i~~~~~v~~lL~aA 217 (517)
||++.+ ++|++||.+|+++|+||++||.+++.++....+.++ +.++.+|+.+|+|+|++++.++. .++.+++.+|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~--~~~~~~f~~~l~~ly~~~~~~~~-~~~~~l~~~a 77 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLD--DVSPEDFRALLEFLYTGKLDLPE-ENVEELLELA 77 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEec--CCCHHHHHHHHHeecCceeecCH-HHHHHHHHHH
Confidence 677777 799999999999999999999999888878889998 89999999999999999999999 7999999999
Q ss_pred hhcCchhHHHHHH
Q 010134 218 DKFEVASCMRYCS 230 (517)
Q Consensus 218 d~~~v~~L~~~C~ 230 (517)
++|+++.|++.|+
T Consensus 78 ~~~~~~~l~~~c~ 90 (90)
T smart00225 78 DYLQIPGLVELCE 90 (90)
T ss_pred HHHCcHHHHhhhC
Confidence 9999999999984
No 11
>PHA03098 kelch-like protein; Provisional
Probab=99.57 E-value=1.3e-13 Score=151.02 Aligned_cols=252 Identities=12% Similarity=0.098 Sum_probs=157.4
Q ss_pred CCChhhHHHHHHhccccccccChHHHHHHHHHHHHHHHH-----HHhhccHHHHHhcCCChHHH-----HHHHHhhhccc
Q 010134 237 PMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYK-----DMTKFQDEWARAQYPRVEER-----REVLGSRLARF 306 (517)
Q Consensus 237 ~l~~~n~~~~l~lA~~~~~a~~~~~L~~~~~~fi~~nf~-----~v~~f~eeWi~~~~~~~~~R-----~~~l~~~Ll~~ 306 (517)
.++.+|+..++.+|..+ +++.|++.|.+|+.+++. .+..+.+ .+++....+. .+.+ .++.+.
T Consensus 72 ~i~~~~~~~ll~~A~~l----~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~---~~~~~~L~~~~~~~i~~nf-~~v~~~ 143 (534)
T PHA03098 72 NITSNNVKDILSIANYL----IIDFLINLCINYIIKIIDDNNCIDIYRFSF---FYGCKKLYSAAYNYIRNNI-ELIYND 143 (534)
T ss_pred EEcHHHHHHHHHHHHHh----CcHHHHHHHHHHHHHhCCHhHHHHHHHHHH---HcCcHHHHHHHHHHHHHHH-HHHhcC
Confidence 57899999999999999 689999999999998542 1211110 1110000000 1233 355666
Q ss_pred ccCCCCCHHHHHhhcccCCCC-C-hh-HHHHHHHH------------------HHhhhccch-------------hhccc
Q 010134 307 IRFPHMTCRKLKKVLTCNDFD-H-DV-ASKLVLEA------------------LFFKAEAPH-------------RQRTL 352 (517)
Q Consensus 307 VRf~lms~~~L~~~~~~~~l~-~-~~-~~~ll~eA------------------l~y~~~~~~-------------~q~~~ 352 (517)
=.|..|+.+.|.++++++.+. . +. ..+.+... +++...++. ..+.+
T Consensus 144 ~~f~~l~~~~l~~ll~~~~L~v~~E~~v~~av~~W~~~~~~~r~~~~~~ll~~vR~~~~~~~~l~~~~~~~~~~~~~~~~ 223 (534)
T PHA03098 144 PDFIYLSKNELIKILSDDKLNVSSEDVVLEIIIKWLTSKKNNKYKDICLILKVLRITFLSEEGIKKLKRWKLRIKKKKIV 223 (534)
T ss_pred chhhcCCHHHHHHHhcCCCcCcCCHHHHHHHHHHHHhcChhhhHhHHHHHHhhccccccCHHHHHHHHHHHhhcCCccee
Confidence 678889999999998887764 2 11 11222211 121111100 00000
Q ss_pred ccc--------------cccccccc--cccccccccc----cceEEEecCCCCceeecC-CC-ccceeeEeeCCeeeeee
Q 010134 353 AAE--------------ESVTLNRR--FVERAYKYRP----VKVVEFERPRQQCVVYLD-LK-REECENLFPSGRVYSQA 410 (517)
Q Consensus 353 ~~~--------------~~~p~~R~--~~~~i~v~g~----~~~v~~y~p~~~~W~~l~-~~-r~~~~~a~~~g~iY~~~ 410 (517)
.++ ...+ |. ....+++.++ ...+.+|++..++|..++ .+ +..++++++++.||
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly--- 298 (534)
T PHA03098 224 FNKRCIKIIYSKKYNLNKILP--RSSTFGSIIYIHITMSIFTYNYITNYSPLSEINTIIDIHYVYCFGSVVLNNVIY--- 298 (534)
T ss_pred ccccchHHHHHHHhcccCCCc--CccCCCcceEeecccchhhceeeecchhhhhcccccCccccccceEEEECCEEE---
Confidence 000 0011 11 1122332222 134567888899998854 33 34458999999999
Q ss_pred eeecccee-----------cccccee-----cccCccceEEEEECCee----cc---CCcccccccCcceeeCc---cce
Q 010134 411 FHLGGQGF-----------FLSAHCN-----MDQQSSFHCFGLFLGMQ----EK---GSVSFAVDYEFAARSKP---TEE 464 (517)
Q Consensus 411 fviGG~~~-----------~~~~~~~-----m~~~R~~~~~~~~~g~i----~~---~~l~s~V~~~~~E~ydp---~W~ 464 (517)
++||... ......| |+.+|..|++++++|++ |. +.+++ | |+||| +|+
T Consensus 299 -v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~-v-----~~yd~~~~~W~ 371 (534)
T PHA03098 299 -FIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNT-V-----ESWKPGESKWR 371 (534)
T ss_pred -EECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecce-E-----EEEcCCCCcee
Confidence 9999721 1123345 88999999999999998 21 12344 5 99999 999
Q ss_pred eccCCCcc------------eEEEccccCCC---ceEEEe-e----ccee-------------EeCCEEEEEcCccc
Q 010134 465 FVSKYKGN------------YTFTGGKAVGY---RNLFAI-P----WTSF-------------MADDSLYFINGILH 508 (517)
Q Consensus 465 ~v~~l~~~------------iYv~GG~~~~~---~~v~~Y-P----W~~~-------------~~~~~iYviGG~~~ 508 (517)
.++|||.+ ||++||..... +++++| | |+.+ +++++||++||...
T Consensus 372 ~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 448 (534)
T PHA03098 372 EEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISY 448 (534)
T ss_pred eCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccC
Confidence 99999876 99999975432 789999 8 9875 78999999999643
No 12
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.57 E-value=1e-14 Score=146.13 Aligned_cols=145 Identities=17% Similarity=0.266 Sum_probs=131.9
Q ss_pred HHhhhhcCCCCCcccEEEEE--EEEEeehhhhcccCHHHHHhhcCCCCCCcceeEEEc--cCCCCHHHHHHHHhccccce
Q 010134 126 EAANGNESSWSMDCSTVVRV--KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALR--INASEEAALMELLNFMYSNT 201 (517)
Q Consensus 126 ~l~~l~~~~~~~~~DV~l~v--~~f~aHr~ILaa~S~yF~amf~~~~~Es~~~~I~l~--~~~~~~~~f~~lL~fiYTg~ 201 (517)
-..++|. ++.-+||++.. ++.+.|+.-|. .|+||++||.|.++|++++.|.|. .+.++..+|..++.-+|.++
T Consensus 59 iyq~lf~--q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dE 135 (488)
T KOG4682|consen 59 IYQNLFL--QGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDE 135 (488)
T ss_pred HHHHHHh--cCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhh
Confidence 3445565 34469999998 79999999998 799999999999999999877765 44599999999999999999
Q ss_pred eecCCcccHHHHHHHHhhcCchhHHHHHHHHhhCCCCChhhHHHHHHhccccccccChHHHHHHHHHHHHHHHHHHhh
Q 010134 202 LSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTK 279 (517)
Q Consensus 202 l~i~~~~~v~~lL~aAd~~~v~~L~~~C~~~L~~~~l~~~n~~~~l~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~ 279 (517)
++|.. +.+..+|++|.+++++.|.+.|.+.|.+ .|++.|++.+++.|.+| +.+.+++.|.+++..||-.+..
T Consensus 136 veI~l-~dv~gvlAaA~~lqldgl~qrC~evMie-~lspkta~~yYea~ckY----gle~vk~kc~ewl~~nl~~i~~ 207 (488)
T KOG4682|consen 136 VEIKL-SDVVGVLAAACLLQLDGLIQRCGEVMIE-TLSPKTACGYYEAACKY----GLESVKKKCLEWLLNNLMTIQN 207 (488)
T ss_pred eeccH-HHHHHHHHHHHHHHHhhHHHHHHHHHHH-hcChhhhhHhhhhhhhh----hhHHHHHHHHHHHHHhhHhhhh
Confidence 99999 8999999999999999999999999999 99999999999999999 5899999999999999988765
No 13
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.55 E-value=6.6e-15 Score=134.69 Aligned_cols=139 Identities=18% Similarity=0.314 Sum_probs=116.3
Q ss_pred hhhcCCCCCcccEEEEE-----EEEEeehhhhcccCHHHHHhhcCCCCCCcceeEEEccCCCCHHHHHHHHhccccceee
Q 010134 129 NGNESSWSMDCSTVVRV-----KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLS 203 (517)
Q Consensus 129 ~l~~~~~~~~~DV~l~v-----~~f~aHr~ILaa~S~yF~amf~~~~~Es~~~~I~l~~~~~~~~~f~~lL~fiYTg~l~ 203 (517)
.+++.. .++|++|.+ +.++|||.||||||++.+- .++-.|. ..+..+. |.++++|...|+||||+++.
T Consensus 59 dL~Ek~--qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wkf--aN~~dek-se~~~~d--Dad~Ea~~t~iRWIYTDEid 131 (280)
T KOG4591|consen 59 DLLEKE--QFSDLKFKFAGNSDKHIPAHKFVLAARSDFWKF--ANGGDEK-SEELDLD--DADFEAFHTAIRWIYTDEID 131 (280)
T ss_pred HHhhcc--cccceeEEecCCccccCchhhhhhhhhcchhhh--ccCCCcc-hhhhccc--ccCHHHHHHhheeeeccccc
Confidence 445544 479999998 5899999999999998863 3333332 2345556 89999999999999999998
Q ss_pred cCC-cccHHHHHHHHhhcCchhHHHHHHHHhhCCCCChhhHHHHHHhccccccccChHHHHHHHHHHHHHHHHHHhh
Q 010134 204 TTA-APALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTK 279 (517)
Q Consensus 204 i~~-~~~v~~lL~aAd~~~v~~L~~~C~~~L~~~~l~~~n~~~~l~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~ 279 (517)
+.. ++-+.++...|++||++-|++.|++-+.. .++++||+.++++|+.. +...|...|...|+.++.++-+
T Consensus 132 fk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a-~l~V~NCIk~Ye~AEe~----n~~qL~n~~~eiIA~~W~dL~~ 203 (280)
T KOG4591|consen 132 FKEDDEFLLELCELANRFQLELLKERCEKGLGA-LLHVDNCIKFYEFAEEL----NARQLMNVAAEIIAGAWDDLGK 203 (280)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HhhHhhHHHHHHHHHHh----hHHHHHHHHHHHHHhhccccCh
Confidence 876 24578999999999999999999999999 99999999999999998 4788999999999988777644
No 14
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.49 E-value=2.2e-14 Score=153.76 Aligned_cols=136 Identities=16% Similarity=0.256 Sum_probs=115.8
Q ss_pred CcccEEEEE-EEEEeehhhhcccCHHHHHhhcCCCCCCcceeEEEccCCCCHHHHHHHHhccc-cceeecCC----cccH
Q 010134 137 MDCSTVVRV-KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMY-SNTLSTTA----APAL 210 (517)
Q Consensus 137 ~~~DV~l~v-~~f~aHr~ILaa~S~yF~amf~~~~~Es~~~~I~l~~~~~~~~~f~~lL~fiY-Tg~l~i~~----~~~v 210 (517)
.+|+|++.- +.++||+++|+||++||..||..-|.|+..-.+.+- .+..+.|+.+|+|+| +++..+-. .+-+
T Consensus 711 ~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~--p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~ 788 (1267)
T KOG0783|consen 711 MDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLS--PLTVEHMSIVLDYLYSDDKVELFKDLKESDFM 788 (1267)
T ss_pred eeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecC--cchHHHHHHHHHHHHccchHHHHhccchhhhh
Confidence 344554444 679999999999999999999999988876333333 567999999999999 55554322 2467
Q ss_pred HHHHHHHhhcCchhHHHHHHHHhhCCCCChhhHHHHHHhccccccccChHHHHHHHHHHHHHHHHHHhh
Q 010134 211 LDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTK 279 (517)
Q Consensus 211 ~~lL~aAd~~~v~~L~~~C~~~L~~~~l~~~n~~~~l~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~ 279 (517)
.++|..||.|-+.+|+..|+.-|.+ .|+..||-.+++||.+| ++++|+..|.+||+.|+..++.
T Consensus 789 ~~il~iaDqlli~~Lk~Ice~~ll~-kl~lk~~~~llefaamY----~ak~L~~~C~dfic~N~~~~Le 852 (1267)
T KOG0783|consen 789 FEILSIADQLLILELKSICEQSLLR-KLNLKTLPTLLEFAAMY----HAKELYSRCIDFICHNIEFFLE 852 (1267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-HhcccchHHHHHHHHHh----hHHHHHHHHHHHHHHhHHHHHH
Confidence 8999999999999999999999999 99999999999999999 6999999999999999998876
No 15
>PHA02790 Kelch-like protein; Provisional
Probab=99.40 E-value=9.4e-13 Score=142.30 Aligned_cols=112 Identities=13% Similarity=-0.029 Sum_probs=92.0
Q ss_pred ccccccccc---ceEEEecCCCCceee---cCCCccceeeEeeCCeeeeeeeeeccce--------ecccccee-----c
Q 010134 366 ERAYKYRPV---KVVEFERPRQQCVVY---LDLKREECENLFPSGRVYSQAFHLGGQG--------FFLSAHCN-----M 426 (517)
Q Consensus 366 ~~i~v~g~~---~~v~~y~p~~~~W~~---l~~~r~~~~~a~~~g~iY~~~fviGG~~--------~~~~~~~~-----m 426 (517)
+.+|+.|+. +.+++|||..++|.. |+.+|..+++++++|+|| ++||.. +......| |
T Consensus 319 ~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IY----viGG~~~~~~~ve~ydp~~~~W~~~~~m 394 (480)
T PHA02790 319 NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIY----VIGGHSETDTTTEYLLPNHDQWQFGPST 394 (480)
T ss_pred CEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEE----EecCcCCCCccEEEEeCCCCEEEeCCCC
Confidence 567876663 679999999999998 677899999999999999 999962 11223445 9
Q ss_pred ccCccceEEEEECCeec--cCCcccccccCcceeeCc---cceeccCCCcc------------eEEEccccCCC--ceEE
Q 010134 427 DQQSSFHCFGLFLGMQE--KGSVSFAVDYEFAARSKP---TEEFVSKYKGN------------YTFTGGKAVGY--RNLF 487 (517)
Q Consensus 427 ~~~R~~~~~~~~~g~i~--~~~l~s~V~~~~~E~ydp---~W~~v~~l~~~------------iYv~GG~~~~~--~~v~ 487 (517)
+.+|..+++++++|+|. .| . + |+||| +|+.++|||.+ ||++||.+++. ++++
T Consensus 395 ~~~r~~~~~~~~~~~IYv~GG---~-~-----e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve 465 (480)
T PHA02790 395 YYPHYKSCALVFGRRLFLVGR---N-A-----EFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIE 465 (480)
T ss_pred CCccccceEEEECCEEEEECC---c-e-----EEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEE
Confidence 99999999999999992 23 3 4 99999 99999999975 99999987543 7899
Q ss_pred Ee-e
Q 010134 488 AI-P 490 (517)
Q Consensus 488 ~Y-P 490 (517)
+| |
T Consensus 466 ~Yd~ 469 (480)
T PHA02790 466 VYNN 469 (480)
T ss_pred EEEC
Confidence 99 8
No 16
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.33 E-value=8e-12 Score=128.28 Aligned_cols=132 Identities=17% Similarity=0.145 Sum_probs=98.7
Q ss_pred cccccccc------cceEEEecCCCCce----ee---cCCCccceeeEeeCCeeeeeeeeeccc-e---------ecccc
Q 010134 366 ERAYKYRP------VKVVEFERPRQQCV----VY---LDLKREECENLFPSGRVYSQAFHLGGQ-G---------FFLSA 422 (517)
Q Consensus 366 ~~i~v~g~------~~~v~~y~p~~~~W----~~---l~~~r~~~~~a~~~g~iY~~~fviGG~-~---------~~~~~ 422 (517)
+.||++|+ .+.+++||+..++| .. ||.+|..+++++.+++|| ++||. . +....
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iY----v~GG~~~~~~~~~v~~yd~~~ 148 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLY----VGGGNRNGKPSNKSYLFNLET 148 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEE----EEeCcCCCccCceEEEEcCCC
Confidence 56777655 36799999999988 33 677888899999999999 99995 1 12233
Q ss_pred cee-----cc-cCccceEEEEECCee--ccC---C-cccccccCcceeeCc---cceeccCCCc----------------
Q 010134 423 HCN-----MD-QQSSFHCFGLFLGMQ--EKG---S-VSFAVDYEFAARSKP---TEEFVSKYKG---------------- 471 (517)
Q Consensus 423 ~~~-----m~-~~R~~~~~~~~~g~i--~~~---~-l~s~V~~~~~E~ydp---~W~~v~~l~~---------------- 471 (517)
..| |+ .+|..+++++++++| -.| . ... + ++||| +|+.+++|+.
T Consensus 149 ~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~-~-----~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~ 222 (323)
T TIGR03548 149 QEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTD-G-----YKYSPKKNQWQKVADPTTDSEPISLLGAASIKIN 222 (323)
T ss_pred CCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccc-e-----EEEecCCCeeEECCCCCCCCCceeccceeEEEEC
Confidence 445 66 489999999999999 111 1 123 3 89999 8999998631
Q ss_pred --ceEEEccccCC----------------------------------CceEEEe-e----ccee--------------Ee
Q 010134 472 --NYTFTGGKAVG----------------------------------YRNLFAI-P----WTSF--------------MA 496 (517)
Q Consensus 472 --~iYv~GG~~~~----------------------------------~~~v~~Y-P----W~~~--------------~~ 496 (517)
.|||+||.+.. .+++++| | |+.+ ++
T Consensus 223 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~ 302 (323)
T TIGR03548 223 ESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLT 302 (323)
T ss_pred CCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEE
Confidence 19999997631 1569999 8 9865 88
Q ss_pred CCEEEEEcCcc
Q 010134 497 DDSLYFINGIL 507 (517)
Q Consensus 497 ~~~iYviGG~~ 507 (517)
+++||++||..
T Consensus 303 ~~~iyv~GG~~ 313 (323)
T TIGR03548 303 GNNIFSINGEL 313 (323)
T ss_pred CCEEEEEeccc
Confidence 99999999953
No 17
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.28 E-value=2.9e-11 Score=125.28 Aligned_cols=135 Identities=13% Similarity=0.064 Sum_probs=93.2
Q ss_pred ccccccccc------------ceEEEecCCCCceeecC--CCcc--ceeeE-eeCCeeeeeeeeeccceec---------
Q 010134 366 ERAYKYRPV------------KVVEFERPRQQCVVYLD--LKRE--ECENL-FPSGRVYSQAFHLGGQGFF--------- 419 (517)
Q Consensus 366 ~~i~v~g~~------------~~v~~y~p~~~~W~~l~--~~r~--~~~~a-~~~g~iY~~~fviGG~~~~--------- 419 (517)
+.||+.|+. +.+++|||..++|..++ .+|. .++++ +++|+|| ++||....
T Consensus 64 ~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IY----viGG~~~~~~~~~~~~~ 139 (346)
T TIGR03547 64 GKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAY----FTGGVNKNIFDGYFADL 139 (346)
T ss_pred CEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEE----EEcCcChHHHHHHHhhH
Confidence 567876542 46899999999999943 3443 44444 6899999 99997210
Q ss_pred ----------------------------c-------cccee-----ccc-CccceEEEEECCee--ccC----Cccc-cc
Q 010134 420 ----------------------------L-------SAHCN-----MDQ-QSSFHCFGLFLGMQ--EKG----SVSF-AV 451 (517)
Q Consensus 420 ----------------------------~-------~~~~~-----m~~-~R~~~~~~~~~g~i--~~~----~l~s-~V 451 (517)
. ....| |+. +|..+++++++|+| -.| ...+ .+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 219 (346)
T TIGR03547 140 SAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEV 219 (346)
T ss_pred hhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchhe
Confidence 1 11234 775 68899999999998 111 1222 12
Q ss_pred ccCcceeeC--c---cceeccCCCcc-------------------eEEEccccCC------------------C-ceEEE
Q 010134 452 DYEFAARSK--P---TEEFVSKYKGN-------------------YTFTGGKAVG------------------Y-RNLFA 488 (517)
Q Consensus 452 ~~~~~E~yd--p---~W~~v~~l~~~-------------------iYv~GG~~~~------------------~-~~v~~ 488 (517)
+.|+ | +|+.+++||.+ |||+||.+.. . .++++
T Consensus 220 -----~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 294 (346)
T TIGR03547 220 -----KQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEV 294 (346)
T ss_pred -----EEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeE
Confidence 4454 4 89999999641 8999997521 0 36899
Q ss_pred e-e----ccee-------------EeCCEEEEEcCcccc
Q 010134 489 I-P----WTSF-------------MADDSLYFINGILHL 509 (517)
Q Consensus 489 Y-P----W~~~-------------~~~~~iYviGG~~~~ 509 (517)
| | |+.+ +++|+|||+||....
T Consensus 295 yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~~~ 333 (346)
T TIGR03547 295 YALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGENSG 333 (346)
T ss_pred EEecCCcccccCCCCCCceeeEEEEcCCEEEEEeccCCC
Confidence 9 7 9876 679999999997543
No 18
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.24 E-value=6.5e-11 Score=121.51 Aligned_cols=121 Identities=12% Similarity=0.080 Sum_probs=89.2
Q ss_pred EEEe-cCCCC-ceee---cCCCccceeeEeeCCeeeeeeeeeccce----------eccccce----e-----cccCccc
Q 010134 377 VEFE-RPRQQ-CVVY---LDLKREECENLFPSGRVYSQAFHLGGQG----------FFLSAHC----N-----MDQQSSF 432 (517)
Q Consensus 377 v~~y-~p~~~-~W~~---l~~~r~~~~~a~~~g~iY~~~fviGG~~----------~~~~~~~----~-----m~~~R~~ 432 (517)
+..+ ++..+ .|.. ||.+|..++++++++.|| ++||.. +...... | |+.+|..
T Consensus 41 v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~ly----viGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~ 116 (323)
T TIGR03548 41 IYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIY----YIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFEN 116 (323)
T ss_pred eEEEecCCCceeEEEcccCCccccceEEEEECCEEE----EEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccC
Confidence 4444 34333 6887 778888888888999999 999961 1111222 2 8889999
Q ss_pred eEEEEECCee---cc----CCcccccccCcceeeCc---cceeccCCCc-c------------eEEEccccCCC-ceEEE
Q 010134 433 HCFGLFLGMQ---EK----GSVSFAVDYEFAARSKP---TEEFVSKYKG-N------------YTFTGGKAVGY-RNLFA 488 (517)
Q Consensus 433 ~~~~~~~g~i---~~----~~l~s~V~~~~~E~ydp---~W~~v~~l~~-~------------iYv~GG~~~~~-~~v~~ 488 (517)
|++++++|+| +. ..++. | ++||| +|+.+++||. + |||+||.+... .++++
T Consensus 117 ~~~~~~~~~iYv~GG~~~~~~~~~-v-----~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~ 190 (323)
T TIGR03548 117 GSACYKDGTLYVGGGNRNGKPSNK-S-----YLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYK 190 (323)
T ss_pred ceEEEECCEEEEEeCcCCCccCce-E-----EEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEE
Confidence 9999999998 11 12344 5 99999 8999999874 2 99999987544 67899
Q ss_pred e-e----ccee-------------------EeCCEEEEEcCcc
Q 010134 489 I-P----WTSF-------------------MADDSLYFINGIL 507 (517)
Q Consensus 489 Y-P----W~~~-------------------~~~~~iYviGG~~ 507 (517)
| | |+.+ +.+++|||+||..
T Consensus 191 yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 191 YSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred EecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence 9 8 9765 2279999999974
No 19
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.23 E-value=7.7e-11 Score=122.08 Aligned_cols=132 Identities=11% Similarity=-0.004 Sum_probs=91.4
Q ss_pred ccccccccc--ceEEEecC--CCCceee---cC-CCccceeeEeeCCeeeeeeeeecccee----------------ccc
Q 010134 366 ERAYKYRPV--KVVEFERP--RQQCVVY---LD-LKREECENLFPSGRVYSQAFHLGGQGF----------------FLS 421 (517)
Q Consensus 366 ~~i~v~g~~--~~v~~y~p--~~~~W~~---l~-~~r~~~~~a~~~g~iY~~~fviGG~~~----------------~~~ 421 (517)
+.||+.|+. +.+..||+ ..++|.. |+ .+|..+++++++|+|| |+||... ...
T Consensus 18 ~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iY----v~GG~~~~~~~~~~~~~~~v~~Yd~~ 93 (346)
T TIGR03547 18 DKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLY----VFGGIGKANSEGSPQVFDDVYRYDPK 93 (346)
T ss_pred CEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEE----EEeCCCCCCCCCcceecccEEEEECC
Confidence 567776654 56778885 6789998 55 4688899999999999 9999721 011
Q ss_pred ccee------cccCccceEEE-EECCee----ccCC-------------------------------------ccccccc
Q 010134 422 AHCN------MDQQSSFHCFG-LFLGMQ----EKGS-------------------------------------VSFAVDY 453 (517)
Q Consensus 422 ~~~~------m~~~R~~~~~~-~~~g~i----~~~~-------------------------------------l~s~V~~ 453 (517)
...| |+.+|..++.+ +++|+| +... +++ |
T Consensus 94 ~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v-- 170 (346)
T TIGR03547 94 KNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKN-V-- 170 (346)
T ss_pred CCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccce-E--
Confidence 2234 33444556555 689998 1110 133 4
Q ss_pred CcceeeCc---cceeccCCCc-c------------eEEEccccCCC---ceEEEe---e----ccee-------------
Q 010134 454 EFAARSKP---TEEFVSKYKG-N------------YTFTGGKAVGY---RNLFAI---P----WTSF------------- 494 (517)
Q Consensus 454 ~~~E~ydp---~W~~v~~l~~-~------------iYv~GG~~~~~---~~v~~Y---P----W~~~------------- 494 (517)
|+||| +|+.++|||. + |||+||..... ..+++| | |+.+
T Consensus 171 ---~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~ 247 (346)
T TIGR03547 171 ---LSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEG 247 (346)
T ss_pred ---EEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCcccc
Confidence 99999 8999999985 3 99999975422 335445 4 8633
Q ss_pred -------EeCCEEEEEcCcc
Q 010134 495 -------MADDSLYFINGIL 507 (517)
Q Consensus 495 -------~~~~~iYviGG~~ 507 (517)
+++|+|||+||..
T Consensus 248 ~~~~~a~~~~~~Iyv~GG~~ 267 (346)
T TIGR03547 248 LAGAFAGISNGVLLVAGGAN 267 (346)
T ss_pred ccEEeeeEECCEEEEeecCC
Confidence 5799999999974
No 20
>PLN02153 epithiospecifier protein
Probab=99.20 E-value=1.5e-10 Score=119.73 Aligned_cols=132 Identities=12% Similarity=0.126 Sum_probs=96.1
Q ss_pred ccccccccc--------ceEEEecCCCCceeecC----CCcc---ceeeEeeCCeeeeeeeeeccc-e---------ecc
Q 010134 366 ERAYKYRPV--------KVVEFERPRQQCVVYLD----LKRE---ECENLFPSGRVYSQAFHLGGQ-G---------FFL 420 (517)
Q Consensus 366 ~~i~v~g~~--------~~v~~y~p~~~~W~~l~----~~r~---~~~~a~~~g~iY~~~fviGG~-~---------~~~ 420 (517)
+.||+.|+. +.++.||+..++|..++ .+|. .+++++++++|| ++||. + +..
T Consensus 33 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iy----v~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 33 DKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLY----IFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred CEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEE----EECCCCCCCccCcEEEEEC
Confidence 567775542 46889999999999832 3343 677889999999 99996 1 112
Q ss_pred cccee-----c-----ccCccceEEEEECCee----cc---C------CcccccccCcceeeCc---cceeccCCCc---
Q 010134 421 SAHCN-----M-----DQQSSFHCFGLFLGMQ----EK---G------SVSFAVDYEFAARSKP---TEEFVSKYKG--- 471 (517)
Q Consensus 421 ~~~~~-----m-----~~~R~~~~~~~~~g~i----~~---~------~l~s~V~~~~~E~ydp---~W~~v~~l~~--- 471 (517)
....| | +.+|..|++++++++| +. + .++. | ++||| +|+.+++++.
T Consensus 109 ~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~-v-----~~yd~~~~~W~~l~~~~~~~~ 182 (341)
T PLN02153 109 VKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRT-I-----EAYNIADGKWVQLPDPGENFE 182 (341)
T ss_pred CCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccce-E-----EEEECCCCeEeeCCCCCCCCC
Confidence 23345 5 6789999999999998 11 1 1223 4 99999 8999987641
Q ss_pred c------------eEEEccccC-----C-----CceEEEe-e----ccee----------------EeCCEEEEEcCcc
Q 010134 472 N------------YTFTGGKAV-----G-----YRNLFAI-P----WTSF----------------MADDSLYFINGIL 507 (517)
Q Consensus 472 ~------------iYv~GG~~~-----~-----~~~v~~Y-P----W~~~----------------~~~~~iYviGG~~ 507 (517)
+ |||+||.+. + .+.+++| | |+.+ +++++|||+||..
T Consensus 183 ~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~ 261 (341)
T PLN02153 183 KRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEV 261 (341)
T ss_pred CCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECccc
Confidence 1 999998642 1 1679999 8 9864 7899999999964
No 21
>PLN02153 epithiospecifier protein
Probab=99.19 E-value=1.7e-10 Score=119.46 Aligned_cols=137 Identities=15% Similarity=0.123 Sum_probs=98.2
Q ss_pred ccccccccc------ceEEEecCCCCceee---c-----CCCccceeeEeeCCeeeeeeeeecccee-------------
Q 010134 366 ERAYKYRPV------KVVEFERPRQQCVVY---L-----DLKREECENLFPSGRVYSQAFHLGGQGF------------- 418 (517)
Q Consensus 366 ~~i~v~g~~------~~v~~y~p~~~~W~~---l-----~~~r~~~~~a~~~g~iY~~~fviGG~~~------------- 418 (517)
+.||+.|+. +.+++||+.+++|.. | |.+|..|++++.+++|| |+||...
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iy----v~GG~~~~~~~~~~~~~~~v 161 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVY----VFGGVSKGGLMKTPERFRTI 161 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEE----EECCccCCCccCCCcccceE
Confidence 567776552 579999999999997 3 55788999999999999 9999721
Q ss_pred ---cccccee-----c---ccCccceEEEEECCee---cc--------C---C-cccccccCcceeeCc---cceeccC-
Q 010134 419 ---FLSAHCN-----M---DQQSSFHCFGLFLGMQ---EK--------G---S-VSFAVDYEFAARSKP---TEEFVSK- 468 (517)
Q Consensus 419 ---~~~~~~~-----m---~~~R~~~~~~~~~g~i---~~--------~---~-l~s~V~~~~~E~ydp---~W~~v~~- 468 (517)
......| | +.+|..|++++++|+| +. | . .+. | ++||| +|+.+++
T Consensus 162 ~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~-v-----~~yd~~~~~W~~~~~~ 235 (341)
T PLN02153 162 EAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNA-V-----QFFDPASGKWTEVETT 235 (341)
T ss_pred EEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCc-e-----EEEEcCCCcEEecccc
Confidence 0112335 3 3789999999999998 11 1 0 233 4 99999 9999875
Q ss_pred --CCcc------------eEEEccccC---------CC--ceEEEe-e----ccee-------------------Ee-CC
Q 010134 469 --YKGN------------YTFTGGKAV---------GY--RNLFAI-P----WTSF-------------------MA-DD 498 (517)
Q Consensus 469 --l~~~------------iYv~GG~~~---------~~--~~v~~Y-P----W~~~-------------------~~-~~ 498 (517)
+|.+ |||+||... +. +++++| | |+.+ +. ++
T Consensus 236 g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~ 315 (341)
T PLN02153 236 GAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKN 315 (341)
T ss_pred CCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcc
Confidence 3433 999999631 11 589999 7 9754 22 45
Q ss_pred EEEEEcCccccccc
Q 010134 499 SLYFINGILHLRAE 512 (517)
Q Consensus 499 ~iYviGG~~~~~~~ 512 (517)
+||++||..+-...
T Consensus 316 ~~~~~gG~~~~~~~ 329 (341)
T PLN02153 316 GLLMHGGKLPTNER 329 (341)
T ss_pred eEEEEcCcCCCCcc
Confidence 89999998665433
No 22
>PLN02193 nitrile-specifier protein
Probab=99.16 E-value=3e-10 Score=122.59 Aligned_cols=132 Identities=11% Similarity=0.046 Sum_probs=97.4
Q ss_pred ccccccccc--------ceEEEecCCCCceeecC----CC---ccceeeEeeCCeeeeeeeeecccee----------cc
Q 010134 366 ERAYKYRPV--------KVVEFERPRQQCVVYLD----LK---REECENLFPSGRVYSQAFHLGGQGF----------FL 420 (517)
Q Consensus 366 ~~i~v~g~~--------~~v~~y~p~~~~W~~l~----~~---r~~~~~a~~~g~iY~~~fviGG~~~----------~~ 420 (517)
+.||+.|+. ..+++||+..++|..++ .+ |..+++++++++|| ++||+.. ..
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lY----vfGG~~~~~~~ndv~~yD~ 251 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLY----VFGGRDASRQYNGFYSFDT 251 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEE----EECCCCCCCCCccEEEEEC
Confidence 456665442 35889999999999732 22 34678889999999 9999721 12
Q ss_pred cccee-----c---ccCccceEEEEECCee----c---cCCcccccccCcceeeCc---cceeccC---CCc--------
Q 010134 421 SAHCN-----M---DQQSSFHCFGLFLGMQ----E---KGSVSFAVDYEFAARSKP---TEEFVSK---YKG-------- 471 (517)
Q Consensus 421 ~~~~~-----m---~~~R~~~~~~~~~g~i----~---~~~l~s~V~~~~~E~ydp---~W~~v~~---l~~-------- 471 (517)
....| | +.+|..|++++.+++| + ...++. + ++||| +|+.+++ +|.
T Consensus 252 ~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~-~-----~~yd~~t~~W~~~~~~~~~~~~R~~~~~~ 325 (470)
T PLN02193 252 TTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKT-L-----DSYNIVDKKWFHCSTPGDSFSIRGGAGLE 325 (470)
T ss_pred CCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcce-E-----EEEECCCCEEEeCCCCCCCCCCCCCcEEE
Confidence 23345 4 7899999999999998 1 123444 4 99999 9999875 232
Q ss_pred ----ceEEEccccCCC-ceEEEe-e----ccee----------------EeCCEEEEEcCcc
Q 010134 472 ----NYTFTGGKAVGY-RNLFAI-P----WTSF----------------MADDSLYFINGIL 507 (517)
Q Consensus 472 ----~iYv~GG~~~~~-~~v~~Y-P----W~~~----------------~~~~~iYviGG~~ 507 (517)
.||++||.++.. +++++| | |+.+ +++++|||+||..
T Consensus 326 ~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~ 387 (470)
T PLN02193 326 VVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEI 387 (470)
T ss_pred EECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCcc
Confidence 299999987544 789999 8 9865 8899999999974
No 23
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.11 E-value=5.7e-10 Score=117.07 Aligned_cols=137 Identities=12% Similarity=0.032 Sum_probs=91.7
Q ss_pred ccccccccc------------ceEEEecCCCCceeecC--CCc--cceeeEe-eCCeeeeeeeeecccee----------
Q 010134 366 ERAYKYRPV------------KVVEFERPRQQCVVYLD--LKR--EECENLF-PSGRVYSQAFHLGGQGF---------- 418 (517)
Q Consensus 366 ~~i~v~g~~------------~~v~~y~p~~~~W~~l~--~~r--~~~~~a~-~~g~iY~~~fviGG~~~---------- 418 (517)
+.||+.|+. ..+++|||..++|..++ .+| ..+++++ .+++|| ++||...
T Consensus 85 ~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IY----v~GG~~~~~~~~~~~d~ 160 (376)
T PRK14131 85 GKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAY----ITGGVNKNIFDGYFEDL 160 (376)
T ss_pred CEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEE----EECCCCHHHHHHHHhhh
Confidence 567776542 46889999999999954 233 4455555 899999 9999621
Q ss_pred ----------------------------------cccccee-----ccc-CccceEEEEECCee--ccC----Ccccccc
Q 010134 419 ----------------------------------FLSAHCN-----MDQ-QSSFHCFGLFLGMQ--EKG----SVSFAVD 452 (517)
Q Consensus 419 ----------------------------------~~~~~~~-----m~~-~R~~~~~~~~~g~i--~~~----~l~s~V~ 452 (517)
......| |+. +|..+++++++++| -.| ..++ ++
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~-~~ 239 (376)
T PRK14131 161 AAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRT-DA 239 (376)
T ss_pred hhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCC-hh
Confidence 0112234 775 78889999999998 111 1222 20
Q ss_pred cCcceeeCc---cceeccCCCc--------------------ceEEEccccCC----------------C---ceEEEe-
Q 010134 453 YEFAARSKP---TEEFVSKYKG--------------------NYTFTGGKAVG----------------Y---RNLFAI- 489 (517)
Q Consensus 453 ~~~~E~ydp---~W~~v~~l~~--------------------~iYv~GG~~~~----------------~---~~v~~Y- 489 (517)
-..-.||| +|+.+++||. .|||+||.+.. . ..+++|
T Consensus 240 -~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd 318 (376)
T PRK14131 240 -VKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYA 318 (376)
T ss_pred -heEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEE
Confidence 00023566 8999999853 19999996421 0 247889
Q ss_pred e----ccee-------------EeCCEEEEEcCccc
Q 010134 490 P----WTSF-------------MADDSLYFINGILH 508 (517)
Q Consensus 490 P----W~~~-------------~~~~~iYviGG~~~ 508 (517)
| |+.+ +++|+|||+||..+
T Consensus 319 ~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~~ 354 (376)
T PRK14131 319 LVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGETA 354 (376)
T ss_pred ecCCcccccCcCCCCccceEEEEeCCEEEEEcCCCC
Confidence 7 9755 78999999999643
No 24
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.03 E-value=8.5e-10 Score=105.95 Aligned_cols=134 Identities=15% Similarity=0.227 Sum_probs=97.0
Q ss_pred ccccccccc-------ceEEEecCCCCceee------cCCCccceeeEeeCCeeeeeeeeeccce-----ec-------c
Q 010134 366 ERAYKYRPV-------KVVEFERPRQQCVVY------LDLKREECENLFPSGRVYSQAFHLGGQG-----FF-------L 420 (517)
Q Consensus 366 ~~i~v~g~~-------~~v~~y~p~~~~W~~------l~~~r~~~~~a~~~g~iY~~~fviGG~~-----~~-------~ 420 (517)
+.+|+.|+. +.+.+|||..+.|.. +|..|.+|+++++++.+| ++||+. |. .
T Consensus 89 d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~My----iFGGye~~a~~FS~d~h~ld~ 164 (392)
T KOG4693|consen 89 DKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMY----IFGGYEEDAQRFSQDTHVLDF 164 (392)
T ss_pred ceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEE----EecChHHHHHhhhccceeEec
Confidence 567776553 567899999999988 788899999999999999 999971 11 1
Q ss_pred cccee--------cccCccceEEEEECCee----c----cCCcccccccCcceeeCc----------cceeccCCCcc--
Q 010134 421 SAHCN--------MDQQSSFHCFGLFLGMQ----E----KGSVSFAVDYEFAARSKP----------TEEFVSKYKGN-- 472 (517)
Q Consensus 421 ~~~~~--------m~~~R~~~~~~~~~g~i----~----~~~l~s~V~~~~~E~ydp----------~W~~v~~l~~~-- 472 (517)
....| -+.-|-.|+..+++|+. + .|..-+.- |.|+- .|...++-+..
T Consensus 165 ~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~-----e~Yc~~i~~ld~~T~aW~r~p~~~~~P~ 239 (392)
T KOG4693|consen 165 ATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIH-----EQYCDTIMALDLATGAWTRTPENTMKPG 239 (392)
T ss_pred cceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchh-----hhhcceeEEEeccccccccCCCCCcCCC
Confidence 22334 33446678888888887 1 12111211 44443 68877654321
Q ss_pred -------------eEEEccccCCC----ceEEEe-e----ccee----------------EeCCEEEEEcCccc
Q 010134 473 -------------YTFTGGKAVGY----RNLFAI-P----WTSF----------------MADDSLYFINGILH 508 (517)
Q Consensus 473 -------------iYv~GG~~~~~----~~v~~Y-P----W~~~----------------~~~~~iYviGG~~~ 508 (517)
+|+.||+.+.- ++++|+ | |..+ +.++++|.+||.+-
T Consensus 240 GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 240 GRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred cccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCCCC
Confidence 99999998643 899999 9 9887 88999999999744
No 25
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.98 E-value=3.2e-09 Score=111.38 Aligned_cols=132 Identities=13% Similarity=0.013 Sum_probs=89.4
Q ss_pred ccccccccc--ceEEEecCC--CCceee---cC-CCccceeeEeeCCeeeeeeeeecccee----------------ccc
Q 010134 366 ERAYKYRPV--KVVEFERPR--QQCVVY---LD-LKREECENLFPSGRVYSQAFHLGGQGF----------------FLS 421 (517)
Q Consensus 366 ~~i~v~g~~--~~v~~y~p~--~~~W~~---l~-~~r~~~~~a~~~g~iY~~~fviGG~~~----------------~~~ 421 (517)
+.||+.++. ..+..||+. .+.|.. |+ .+|.+++++++++.|| ++||+.. ...
T Consensus 39 ~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IY----V~GG~~~~~~~~~~~~~~~v~~YD~~ 114 (376)
T PRK14131 39 NTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLY----VFGGIGKTNSEGSPQVFDDVYKYDPK 114 (376)
T ss_pred CEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEE----EEcCCCCCCCCCceeEcccEEEEeCC
Confidence 567775443 557788875 478987 44 3688889999999999 9999732 011
Q ss_pred ccee------cccCccceEEEE-ECCee----ccCC-------------------------------------ccccccc
Q 010134 422 AHCN------MDQQSSFHCFGL-FLGMQ----EKGS-------------------------------------VSFAVDY 453 (517)
Q Consensus 422 ~~~~------m~~~R~~~~~~~-~~g~i----~~~~-------------------------------------l~s~V~~ 453 (517)
...| ++.+|..|+.++ .+|+| +.+. .+. |
T Consensus 115 ~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-v-- 191 (376)
T PRK14131 115 TNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKE-V-- 191 (376)
T ss_pred CCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCce-E--
Confidence 2234 234445566666 78998 2111 123 4
Q ss_pred CcceeeCc---cceeccCCCc-c------------eEEEccccCCC---ce--EEEe-e----ccee-------------
Q 010134 454 EFAARSKP---TEEFVSKYKG-N------------YTFTGGKAVGY---RN--LFAI-P----WTSF------------- 494 (517)
Q Consensus 454 ~~~E~ydp---~W~~v~~l~~-~------------iYv~GG~~~~~---~~--v~~Y-P----W~~~------------- 494 (517)
++||| +|+.+++||. + |||+||..... .. .++| | |+.+
T Consensus 192 ---~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~ 268 (376)
T PRK14131 192 ---LSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQE 268 (376)
T ss_pred ---EEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCC
Confidence 99999 8999999985 3 99999975322 22 3345 5 8643
Q ss_pred --------EeCCEEEEEcCcc
Q 010134 495 --------MADDSLYFINGIL 507 (517)
Q Consensus 495 --------~~~~~iYviGG~~ 507 (517)
+++++|||+||..
T Consensus 269 ~~~~~~a~~~~~~iyv~GG~~ 289 (376)
T PRK14131 269 GVAGAFAGYSNGVLLVAGGAN 289 (376)
T ss_pred ccceEeceeECCEEEEeeccC
Confidence 4699999999964
No 26
>PLN02193 nitrile-specifier protein
Probab=98.95 E-value=6.6e-09 Score=112.19 Aligned_cols=121 Identities=10% Similarity=-0.002 Sum_probs=87.4
Q ss_pred EEEecCCC----Cceee------cCCCccceeeEeeCCeeeeeeeeeccce---ec---------ccccee-----c-cc
Q 010134 377 VEFERPRQ----QCVVY------LDLKREECENLFPSGRVYSQAFHLGGQG---FF---------LSAHCN-----M-DQ 428 (517)
Q Consensus 377 v~~y~p~~----~~W~~------l~~~r~~~~~a~~~g~iY~~~fviGG~~---~~---------~~~~~~-----m-~~ 428 (517)
+.+++|.. ++|.. +|.+|..|+++++++.|| ++||.. .. .....| + +.
T Consensus 139 ~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iy----v~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~ 214 (470)
T PLN02193 139 AYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIY----SFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDV 214 (470)
T ss_pred EEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEE----EECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCC
Confidence 33446644 79987 356799999999999999 999961 11 122345 1 12
Q ss_pred C---ccceEEEEECCee----c---cCCcccccccCcceeeCc---cceeccCC---Ccc------------eEEEcccc
Q 010134 429 Q---SSFHCFGLFLGMQ----E---KGSVSFAVDYEFAARSKP---TEEFVSKY---KGN------------YTFTGGKA 480 (517)
Q Consensus 429 ~---R~~~~~~~~~g~i----~---~~~l~s~V~~~~~E~ydp---~W~~v~~l---~~~------------iYv~GG~~ 480 (517)
| |..|++++++++| + ...++. | ++||| +|+.++|| |.+ |||+||.+
T Consensus 215 P~~~~~~~~~v~~~~~lYvfGG~~~~~~~nd-v-----~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~ 288 (470)
T PLN02193 215 PHLSCLGVRMVSIGSTLYVFGGRDASRQYNG-F-----YSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVS 288 (470)
T ss_pred CCCcccceEEEEECCEEEEECCCCCCCCCcc-E-----EEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCC
Confidence 2 4578888899988 1 122345 4 99999 89999998 433 99999987
Q ss_pred CCC--ceEEEe-e----ccee----------------EeCCEEEEEcCcc
Q 010134 481 VGY--RNLFAI-P----WTSF----------------MADDSLYFINGIL 507 (517)
Q Consensus 481 ~~~--~~v~~Y-P----W~~~----------------~~~~~iYviGG~~ 507 (517)
... +.+++| | |+.+ +++++||++||..
T Consensus 289 ~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~ 338 (470)
T PLN02193 289 ATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFN 338 (470)
T ss_pred CCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCC
Confidence 543 789999 7 9753 6799999999953
No 27
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=98.85 E-value=2.3e-09 Score=90.81 Aligned_cols=70 Identities=29% Similarity=0.569 Sum_probs=61.6
Q ss_pred HHHHHHhccccccccChHHHHHHHHHHHHHHHHHHhhccHH--------------------------------HHHhcCC
Q 010134 243 ALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDE--------------------------------WARAQYP 290 (517)
Q Consensus 243 ~~~~l~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~f~ee--------------------------------Wi~~~~~ 290 (517)
|+.++.+|..| ++++|.++|.+||..||.++.+ +++ |+++
T Consensus 1 C~~i~~~A~~~----~~~~L~~~~~~~i~~nf~~v~~-~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~--- 72 (103)
T PF07707_consen 1 CLSIYRLAEKY----GLEELAEACLRFIAKNFNEVSK-SDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKH--- 72 (103)
T ss_dssp HHHHHHHHHHT----T-HHHHHHHHHHHHHTHHHHTT-SHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHC---
T ss_pred ChhHHHHHHHc----ChHHHHHHHHHHHHHHHHHHcc-chhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHh---
Confidence 89999999999 6899999999999999999987 544 9999
Q ss_pred ChHHHHHHHHhhhcccccCCCCCHHHHHhhc
Q 010134 291 RVEERREVLGSRLARFIRFPHMTCRKLKKVL 321 (517)
Q Consensus 291 ~~~~R~~~l~~~Ll~~VRf~lms~~~L~~~~ 321 (517)
+.++|.+.+ .+||++|||++|++++|.+.+
T Consensus 73 ~~~~r~~~~-~~Ll~~iR~~~l~~~~L~~~v 102 (103)
T PF07707_consen 73 NPENREEHL-KELLSCIRFPLLSPEELQNVV 102 (103)
T ss_dssp THHHHTTTH-HHHHCCCHHHCT-HHHHHHCC
T ss_pred CHHHHHHHH-HHHHHhCCcccCCHHHHHHHH
Confidence 788898888 699999999999999999865
No 28
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=98.44 E-value=4.5e-07 Score=76.00 Aligned_cols=67 Identities=21% Similarity=0.429 Sum_probs=52.5
Q ss_pred HHHHHHhccccccccChHHHHHHHHHHHHHHHHHHhhccHH--------------------------------HHHhcCC
Q 010134 243 ALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDE--------------------------------WARAQYP 290 (517)
Q Consensus 243 ~~~~l~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~f~ee--------------------------------Wi~~~~~ 290 (517)
|+.++.+|+.| +++.|.++|.+||.+||..+.+ +++ |+++
T Consensus 1 c~~i~~~a~~~----~~~~L~~~~~~~i~~nf~~~~~-~~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~--- 72 (101)
T smart00875 1 CLGIRRFAELY----GLEELLEKALRFILKNFLEVAQ-SEEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKH--- 72 (101)
T ss_pred CHhHHHHHHHh----ChHHHHHHHHHHHHHHHHHHhc-CcHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHC---
Confidence 56677777777 5788888888888888888776 432 9999
Q ss_pred ChHHHHHHHHhhhcccccCCCCCHHHHHh
Q 010134 291 RVEERREVLGSRLARFIRFPHMTCRKLKK 319 (517)
Q Consensus 291 ~~~~R~~~l~~~Ll~~VRf~lms~~~L~~ 319 (517)
+...|. .+ ..|+++|||++|++.+|.+
T Consensus 73 ~~~~~~-~~-~~ll~~ir~~~~~~~~l~~ 99 (101)
T smart00875 73 DPERRR-HL-PELLSHVRFPLLSPEYLLE 99 (101)
T ss_pred CHHHHH-HH-HHHHHhCCCCCCCHHHHHh
Confidence 555555 67 6999999999999998875
No 29
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.42 E-value=2.5e-07 Score=92.77 Aligned_cols=159 Identities=19% Similarity=0.146 Sum_probs=112.0
Q ss_pred EEEEE-EEEEeehhhhcccCHHHHHhhcCCCCCCcc----eeEEEccCCCCHHHHHHHHhccccceeecCCcccHHHHHH
Q 010134 141 TVVRV-KTLHISSPILAAKSPFFYKLFSNGMKESEQ----RHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDVLM 215 (517)
Q Consensus 141 V~l~v-~~f~aHr~ILaa~S~yF~amf~~~~~Es~~----~~I~l~~~~~~~~~f~~lL~fiYTg~l~i~~~~~v~~lL~ 215 (517)
|.+-+ .++|||++++. |..||+.||.|++.|++. ....++ .....+.+.+++|+|+++..+.. +-+.++|.
T Consensus 295 iql~~~~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp--~~~~~vveI~lr~lY~d~tdi~~-~~A~dvll 370 (516)
T KOG0511|consen 295 IQLPEEDRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLP--SLADVVVEIDLRNLYCDQTDIIF-DVASDVLL 370 (516)
T ss_pred ccccccccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccc--hHHHHHHHHHHHHhhcccccchH-HHHhhHHH
Confidence 44444 58999999998 778999999999999652 223444 78889999999999999999998 88999999
Q ss_pred HHhhcCch--h-HHHHHHHHhhCC--CCChhhHHHHHHhccccccccChHHHHHHHHHHHHHHHHHHhhccHH---HHHh
Q 010134 216 AADKFEVA--S-CMRYCSRLLRNM--PMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDE---WARA 287 (517)
Q Consensus 216 aAd~~~v~--~-L~~~C~~~L~~~--~l~~~n~~~~l~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~f~ee---Wi~~ 287 (517)
.|+++-+. + |+.+..--|++- .++.-|++.++..+--. ....|.+.+..|++.|+..+.. .+| -++.
T Consensus 371 ~ad~lal~~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~----~~~rlEqfa~~~~a~hl~~l~~-dPe~~~~~~~ 445 (516)
T KOG0511|consen 371 FADKLALADDRLLKTAASAEITQWLELIDMYGVLDILEYCWDL----VACRLEQFAETHEARHLLLLLP-DPEGDSSLRT 445 (516)
T ss_pred HhhHhhhhhhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHhcC-CchhhHHHHh
Confidence 99999766 2 555555555551 23444577777755544 4678889999999999888887 555 2222
Q ss_pred cCCChHHHHHHHHhhhccccc
Q 010134 288 QYPRVEERREVLGSRLARFIR 308 (517)
Q Consensus 288 ~~~~~~~R~~~l~~~Ll~~VR 308 (517)
-.+....|++.-.-+|+.-||
T Consensus 446 s~~ri~~rqeTDtieLlDDiR 466 (516)
T KOG0511|consen 446 SVPRIPARQETDTIELLDDIR 466 (516)
T ss_pred ccchhhhhcccchhHHHHHHH
Confidence 111222343332235666666
No 30
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=98.40 E-value=1.3e-06 Score=84.28 Aligned_cols=125 Identities=13% Similarity=0.073 Sum_probs=86.2
Q ss_pred ceEEEecCCCCceeecCC----------------CccceeeEeeCCeeeeeeeeeccce-----------ecccccee--
Q 010134 375 KVVEFERPRQQCVVYLDL----------------KREECENLFPSGRVYSQAFHLGGQG-----------FFLSAHCN-- 425 (517)
Q Consensus 375 ~~v~~y~p~~~~W~~l~~----------------~r~~~~~a~~~g~iY~~~fviGG~~-----------~~~~~~~~-- 425 (517)
-.|+.++..+-+|..||+ .|.+|.++..++++| +.||++ |....+.|
T Consensus 44 iDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~y----vWGGRND~egaCN~Ly~fDp~t~~W~~ 119 (392)
T KOG4693|consen 44 IDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAY----VWGGRNDDEGACNLLYEFDPETNVWKK 119 (392)
T ss_pred ceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEE----EEcCccCcccccceeeeeccccccccc
Confidence 457788888889988543 378899999999999 999982 22233445
Q ss_pred ------cccCccceEEEEECCee--cc------CCcccccccCcceeeCc---cceeccCCCcc---------------e
Q 010134 426 ------MDQQSSFHCFGLFLGMQ--EK------GSVSFAVDYEFAARSKP---TEEFVSKYKGN---------------Y 473 (517)
Q Consensus 426 ------m~~~R~~~~~~~~~g~i--~~------~~l~s~V~~~~~E~ydp---~W~~v~~l~~~---------------i 473 (517)
.+-+|-.|++|+++... -. ...+.-+ ..+|- +|+.+..-..| +
T Consensus 120 p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~-----h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~M 194 (392)
T KOG4693|consen 120 PEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDT-----HVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMM 194 (392)
T ss_pred cceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccc-----eeEeccceeeeehhccCCCchhhhhhhhhhccceE
Confidence 88999999999998876 11 1222212 34444 89888654433 9
Q ss_pred EEEccccCCC-----------ceEEEee-----ccee----------------EeCCEEEEEcCccc
Q 010134 474 TFTGGKAVGY-----------RNLFAIP-----WTSF----------------MADDSLYFINGILH 508 (517)
Q Consensus 474 Yv~GG~~~~~-----------~~v~~YP-----W~~~----------------~~~~~iYviGG~~~ 508 (517)
||.||.+... ..+-.+. |+.. ++|++||++||++.
T Consensus 195 YiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng 261 (392)
T KOG4693|consen 195 YIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNG 261 (392)
T ss_pred EEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccch
Confidence 9999975321 2222221 8775 99999999999743
No 31
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.12 E-value=3.6e-06 Score=91.84 Aligned_cols=105 Identities=19% Similarity=0.208 Sum_probs=74.5
Q ss_pred hHHhhhhcCCC--CCcccEEEEE--EEEEeehhhhcccCHHHHHhhcCCCCCCcc------------eeEEEccCCCCHH
Q 010134 125 DEAANGNESSW--SMDCSTVVRV--KTLHISSPILAAKSPFFYKLFSNGMKESEQ------------RHVALRINASEEA 188 (517)
Q Consensus 125 ~~l~~l~~~~~--~~~~DV~l~v--~~f~aHr~ILaa~S~yF~amf~~~~~Es~~------------~~I~l~~~~~~~~ 188 (517)
..++.|+.... ..+.||+|.| +.|+|||.||+++|++|+++|...-+.+.. ..|.+. ++.+.
T Consensus 543 ~sf~kLl~e~~~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve--~i~p~ 620 (1267)
T KOG0783|consen 543 GSFPKLLSEENYKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVE--DIPPL 620 (1267)
T ss_pred hhhHHHhhccccccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeec--cCCHH
Confidence 45666665433 3578999999 789999999999999999999764333222 234455 89999
Q ss_pred HHHHHHhccccceeec--CC-----------cccH-------HHHHHHHhhcCchhHHHHHHH
Q 010134 189 ALMELLNFMYSNTLST--TA-----------APAL-------LDVLMAADKFEVASCMRYCSR 231 (517)
Q Consensus 189 ~f~~lL~fiYTg~l~i--~~-----------~~~v-------~~lL~aAd~~~v~~L~~~C~~ 231 (517)
.|+.+|+||||+.+-- .. .+|. ..++-.+.+|++..|...-..
T Consensus 621 mfe~lL~~iYtdt~~~P~heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~~s 683 (1267)
T KOG0783|consen 621 MFEILLHYIYTDTLLSPWHEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFSVS 683 (1267)
T ss_pred HHHHHHHHHhcccccCCccccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhhhh
Confidence 9999999999995421 11 1233 347777888888777665433
No 32
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.94 E-value=5.9e-06 Score=79.84 Aligned_cols=81 Identities=16% Similarity=0.245 Sum_probs=61.6
Q ss_pred hhHHhhhhcCCCCCcccEEEEEEEEEeehhhhcccCHHHHHhhcCCCCCCcce--eEEEccCCCCHHHHHHHHhccccce
Q 010134 124 GDEAANGNESSWSMDCSTVVRVKTLHISSPILAAKSPFFYKLFSNGMKESEQR--HVALRINASEEAALMELLNFMYSNT 201 (517)
Q Consensus 124 ~~~l~~l~~~~~~~~~DV~l~v~~f~aHr~ILaa~S~yF~amf~~~~~Es~~~--~I~l~~~~~~~~~f~~lL~fiYTg~ 201 (517)
-.|+..+++..-..+-|+.|.-..|+|||++||+|+|+|+.+.+..-.-.... .|..- +++..+|+++|+|+|||+
T Consensus 118 ~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~a--g~dm~~feafLh~l~tgE 195 (401)
T KOG2838|consen 118 LKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFA--GFDMDAFEAFLHSLITGE 195 (401)
T ss_pred HHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhh--ccChHHHHHHHHHHHhcc
Confidence 56777888877766667777767899999999999999999887632211122 23334 789999999999999998
Q ss_pred eecCC
Q 010134 202 LSTTA 206 (517)
Q Consensus 202 l~i~~ 206 (517)
.-...
T Consensus 196 fgmEd 200 (401)
T KOG2838|consen 196 FGMED 200 (401)
T ss_pred cchhh
Confidence 86544
No 33
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.86 E-value=8.8e-06 Score=82.52 Aligned_cols=130 Identities=15% Similarity=0.120 Sum_probs=108.2
Q ss_pred EEEEeehhhhcccCHHHHHhhcCCCCCCcceeEEEccCCCCHHHHHHHHhccccceeecCCcccHH---HHHHHHhhcCc
Q 010134 146 KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALL---DVLMAADKFEV 222 (517)
Q Consensus 146 ~~f~aHr~ILaa~S~yF~amf~~~~~Es~~~~I~l~~~~~~~~~f~~lL~fiYTg~l~i~~~~~v~---~lL~aAd~~~v 222 (517)
..+.+|+++++++|++|++|+.....+.....+++. +.++..++++..|.|+..-...- +... .++.+|.+++.
T Consensus 110 g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~--d~~~~~~~~~~~F~~~~s~~~~~-~~~~~~~~~~a~~f~~~~ 186 (297)
T KOG1987|consen 110 GFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLL--EEKPEVLEALNGFQVLPSQVSSV-ERIFEKHPDLAAAFKYKN 186 (297)
T ss_pred cEEEcCceEEEeeecceeeecccccchhcccccccc--ccchhhHhhhceEEEeccchHHH-HHhhcCChhhhhcccccc
Confidence 569999999999999999999987776666777777 89999999999999996554443 3443 88889999999
Q ss_pred hhHHHHHHHHhhCCCCChhhHHHHHHhccccccccChHHHHHHHHHHHHH--HHHHHhhccHHH
Q 010134 223 ASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLAS--RYKDMTKFQDEW 284 (517)
Q Consensus 223 ~~L~~~C~~~L~~~~l~~~n~~~~l~lA~~~~~a~~~~~L~~~~~~fi~~--nf~~v~~f~eeW 284 (517)
..|+..|...|.+ .++..+...++..+..+ ....+..++..++.. ++..+.+ ..+|
T Consensus 187 ~~lk~~~~~~l~~-~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~ld~l~~-~~~~ 244 (297)
T KOG1987|consen 187 RHLKLACMPVLLS-LIETLNVSQSLQEASNY----DLKEAKSALTYVIAAGFKLDWLEK-KLNE 244 (297)
T ss_pred HHHHHHHHHHHHH-HHHhhhhcccHHHhchh----HHHHHHHHHHHHHhccchHhHHHH-HHHH
Confidence 9999999999999 88888888888888877 467788888888888 7777765 4444
No 34
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=97.85 E-value=8.1e-05 Score=76.16 Aligned_cols=130 Identities=15% Similarity=0.147 Sum_probs=87.9
Q ss_pred ceEEEecCCCCceee-----cCCCcccee-eEeeCCeeeeeeeeeccc-------eecccccee----------------
Q 010134 375 KVVEFERPRQQCVVY-----LDLKREECE-NLFPSGRVYSQAFHLGGQ-------GFFLSAHCN---------------- 425 (517)
Q Consensus 375 ~~v~~y~p~~~~W~~-----l~~~r~~~~-~a~~~g~iY~~~fviGG~-------~~~~~~~~~---------------- 425 (517)
+.+..|+.+.+.|.. -|.+|..|. +|+..|.+| +.||. .|+.-...|
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~----~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g 173 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILW----LFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG 173 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEE----EeccccCCcchhhhhhhhheeeeeeccchheeeccCC
Confidence 456778999999998 456788876 556779999 99995 222222233
Q ss_pred cccCccceEEEEECCee---c--cCCcccccccCcceeeCc---cceeccCCCc--c---------------eEEEcccc
Q 010134 426 MDQQSSFHCFGLFLGMQ---E--KGSVSFAVDYEFAARSKP---TEEFVSKYKG--N---------------YTFTGGKA 480 (517)
Q Consensus 426 m~~~R~~~~~~~~~g~i---~--~~~l~s~V~~~~~E~ydp---~W~~v~~l~~--~---------------iYv~GG~~ 480 (517)
-+.+|++|-+++...++ + ......+.=|+..-+||. +|..+.| +. | |||.||++
T Consensus 174 ~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep-sga~PtpRSGcq~~vtpqg~i~vyGGYs 252 (521)
T KOG1230|consen 174 GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP-SGAGPTPRSGCQFSVTPQGGIVVYGGYS 252 (521)
T ss_pred CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC-CCCCCCCCCcceEEecCCCcEEEEcchh
Confidence 68899999999887776 1 111111111111156666 9999988 43 1 99999985
Q ss_pred CC---------C--ceEEEe-e---------ccee-----------------EeCCEEEEEcCcccc
Q 010134 481 VG---------Y--RNLFAI-P---------WTSF-----------------MADDSLYFINGILHL 509 (517)
Q Consensus 481 ~~---------~--~~v~~Y-P---------W~~~-----------------~~~~~iYviGG~~~~ 509 (517)
-. . .+++.. | |+.+ .-+++-|++||+..+
T Consensus 253 K~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~ 319 (521)
T KOG1230|consen 253 KQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDL 319 (521)
T ss_pred HhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecc
Confidence 21 1 567777 6 7776 457799999999765
No 35
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.84 E-value=5.7e-06 Score=79.92 Aligned_cols=99 Identities=21% Similarity=0.320 Sum_probs=73.0
Q ss_pred EEEeehhhhcccCHHHHHhhcCCCCCCc---------ceeEEEccCCCCHHHH-HHHHhccccceeecCC----------
Q 010134 147 TLHISSPILAAKSPFFYKLFSNGMKESE---------QRHVALRINASEEAAL-MELLNFMYSNTLSTTA---------- 206 (517)
Q Consensus 147 ~f~aHr~ILaa~S~yF~amf~~~~~Es~---------~~~I~l~~~~~~~~~f-~~lL~fiYTg~l~i~~---------- 206 (517)
++.||++|.|+||++||.++....+|.. .+.|.+.. -+=|.+| -.+|++|||+.+.++-
T Consensus 262 eikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE-~I~PkafA~i~lhclYTD~lDlSl~hkce~SigS 340 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDE-LIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGS 340 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechh-hhcchhhhhhhhhhheecccchhhcccCCccccc
Confidence 6899999999999999999975444332 24566653 2344444 4579999999886532
Q ss_pred -----------------cccHHHHHHHHhhcCchhHHHHHHHHhhCCCCChhhHHHHH
Q 010134 207 -----------------APALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYL 247 (517)
Q Consensus 207 -----------------~~~v~~lL~aAd~~~v~~L~~~C~~~L~~~~l~~~n~~~~l 247 (517)
...+++|+.+|-+|.++-|.+.|++.+.. ....++...++
T Consensus 341 LSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~e~Vir~-acaadlsn~cL 397 (401)
T KOG2838|consen 341 LSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQACEDVIRK-ACAADLSNGCL 397 (401)
T ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhcccccc
Confidence 12357888999999999999999999998 77777665544
No 36
>PF13964 Kelch_6: Kelch motif
Probab=97.73 E-value=4.8e-05 Score=55.64 Aligned_cols=46 Identities=22% Similarity=0.213 Sum_probs=36.4
Q ss_pred CccceeeEeeCCeeeeeeeeeccceeccccceecccCccceEEEEECCeeccCCcccccccCcceeeCc---cceeccCC
Q 010134 393 KREECENLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARSKP---TEEFVSKY 469 (517)
Q Consensus 393 ~r~~~~~a~~~g~iY~~~fviGG~~~~~~~~~~m~~~R~~~~~~~~~g~i~~~~l~s~V~~~~~E~ydp---~W~~v~~l 469 (517)
+|.++++++++++|| ++||.... ....+. | |+||| +|+.++||
T Consensus 1 pR~~~s~v~~~~~iy----v~GG~~~~------------------------~~~~~~-v-----~~yd~~t~~W~~~~~m 46 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIY----VFGGYDNS------------------------GKYSND-V-----ERYDPETNTWEQLPPM 46 (50)
T ss_pred CCccCEEEEECCEEE----EECCCCCC------------------------CCcccc-E-----EEEcCCCCcEEECCCC
Confidence 578899999999999 99997310 112345 5 99999 99999999
Q ss_pred Ccc
Q 010134 470 KGN 472 (517)
Q Consensus 470 ~~~ 472 (517)
|.+
T Consensus 47 p~p 49 (50)
T PF13964_consen 47 PTP 49 (50)
T ss_pred CCC
Confidence 975
No 37
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=97.61 E-value=4.9e-05 Score=54.61 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=35.0
Q ss_pred CccceeeEeeCCeeeeeeeeeccceeccccceecccCccceEEEEECCeeccCCcccccccCcceeeCc---cceeccCC
Q 010134 393 KREECENLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARSKP---TEEFVSKY 469 (517)
Q Consensus 393 ~r~~~~~a~~~g~iY~~~fviGG~~~~~~~~~~m~~~R~~~~~~~~~g~i~~~~l~s~V~~~~~E~ydp---~W~~v~~l 469 (517)
+|..|++++.+++|| ++||... ....+++ | |+||| +|+.++||
T Consensus 1 pR~~~~~~~~~~~iy----v~GG~~~------------------------~~~~~~~-v-----~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIY----VIGGYDG------------------------NNQPTNS-V-----EVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEE----EEEEBES------------------------TSSBEEE-E-----EEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEE----EEeeecc------------------------cCceeee-E-----EEEeCCCCEEEEcCCC
Confidence 578999999999999 9999732 1123455 5 99999 99999999
Q ss_pred C
Q 010134 470 K 470 (517)
Q Consensus 470 ~ 470 (517)
|
T Consensus 47 p 47 (47)
T PF01344_consen 47 P 47 (47)
T ss_dssp S
T ss_pred C
Confidence 7
No 38
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.61 E-value=0.00052 Score=74.50 Aligned_cols=121 Identities=14% Similarity=0.063 Sum_probs=91.1
Q ss_pred eEEEecCCCCceee------cCCCccceeeEeeCCeeeeeeeeeccce-----------ecccccee--------cccCc
Q 010134 376 VVEFERPRQQCVVY------LDLKREECENLFPSGRVYSQAFHLGGQG-----------FFLSAHCN--------MDQQS 430 (517)
Q Consensus 376 ~v~~y~p~~~~W~~------l~~~r~~~~~a~~~g~iY~~~fviGG~~-----------~~~~~~~~--------m~~~R 430 (517)
.++.+|...+.|.. .|.+|.++..++++++|| ++||+. +......| ++.+|
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~----lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r 164 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLY----LFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPR 164 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEECCeEE----EEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCc
Confidence 38888988899987 456799999999999999 999973 12234455 79999
Q ss_pred cceEEEEECCee-------ccC-CcccccccCcceeeCc---cceeccC---CCcc------------eEEEccccC-CC
Q 010134 431 SFHCFGLFLGMQ-------EKG-SVSFAVDYEFAARSKP---TEEFVSK---YKGN------------YTFTGGKAV-GY 483 (517)
Q Consensus 431 ~~~~~~~~~g~i-------~~~-~l~s~V~~~~~E~ydp---~W~~v~~---l~~~------------iYv~GG~~~-~~ 483 (517)
.+|++++.+.++ ..+ .++. + ..||+ +|..+.- -|.| ++++||... ..
T Consensus 165 ~~Hs~~~~g~~l~vfGG~~~~~~~~nd-l-----~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~ 238 (482)
T KOG0379|consen 165 AGHSATVVGTKLVVFGGIGGTGDSLND-L-----HIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDV 238 (482)
T ss_pred ccceEEEECCEEEEECCccCcccceee-e-----eeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCc
Confidence 999999998887 122 3445 3 88999 8998853 2322 899998873 33
Q ss_pred --ceEEEe-e----ccee----------------EeCCEEEEEcCc
Q 010134 484 --RNLFAI-P----WTSF----------------MADDSLYFINGI 506 (517)
Q Consensus 484 --~~v~~Y-P----W~~~----------------~~~~~iYviGG~ 506 (517)
+++.++ - |... +.++.++++||.
T Consensus 239 ~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~ 284 (482)
T KOG0379|consen 239 YLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGG 284 (482)
T ss_pred eecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCC
Confidence 777777 3 7643 779999999996
No 39
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.50 E-value=0.00056 Score=74.22 Aligned_cols=108 Identities=15% Similarity=0.133 Sum_probs=81.0
Q ss_pred cCCCccceeeEeeCCeeeeeeeeeccce--ecccc-ce---------e--------cccCccceEEEEECCee--ccC--
Q 010134 390 LDLKREECENLFPSGRVYSQAFHLGGQG--FFLSA-HC---------N--------MDQQSSFHCFGLFLGMQ--EKG-- 445 (517)
Q Consensus 390 l~~~r~~~~~a~~~g~iY~~~fviGG~~--~~~~~-~~---------~--------m~~~R~~~~~~~~~g~i--~~~-- 445 (517)
.|.+|..|+++..++.+| |.||.+ ....+ .. | -+.+|..|++++++.+| -.|
T Consensus 57 ~p~~R~~hs~~~~~~~~~----vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~ 132 (482)
T KOG0379|consen 57 GPIPRAGHSAVLIGNKLY----VFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTD 132 (482)
T ss_pred CcchhhccceeEECCEEE----EECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEcccc
Confidence 456799999999999999 999972 22222 12 2 56789999999999888 111
Q ss_pred ----CcccccccCcceeeCc---cceeccCCCc-c--------------eEEEccccCCC---ceEEEe-e----ccee-
Q 010134 446 ----SVSFAVDYEFAARSKP---TEEFVSKYKG-N--------------YTFTGGKAVGY---RNLFAI-P----WTSF- 494 (517)
Q Consensus 446 ----~l~s~V~~~~~E~ydp---~W~~v~~l~~-~--------------iYv~GG~~~~~---~~v~~Y-P----W~~~- 494 (517)
.+.. + -+||+ +|+...+... | +||.||..... +++++| + |..+
T Consensus 133 ~~~~~~~~-l-----~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~ 206 (482)
T KOG0379|consen 133 KKYRNLNE-L-----HSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELD 206 (482)
T ss_pred CCCCChhh-e-----EeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecc
Confidence 1223 3 67888 8999887654 2 99999976433 889999 6 9887
Q ss_pred ---------------EeCCEEEEEcCcc
Q 010134 495 ---------------MADDSLYFINGIL 507 (517)
Q Consensus 495 ---------------~~~~~iYviGG~~ 507 (517)
++++++++|||-.
T Consensus 207 ~~g~~P~pR~gH~~~~~~~~~~v~gG~~ 234 (482)
T KOG0379|consen 207 TQGEAPSPRYGHAMVVVGNKLLVFGGGD 234 (482)
T ss_pred cCCCCCCCCCCceEEEECCeEEEEeccc
Confidence 8899999999976
No 40
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=97.47 E-value=0.0005 Score=72.06 Aligned_cols=73 Identities=14% Similarity=0.055 Sum_probs=53.3
Q ss_pred cccccccc-----cceEEEecCCCCceee------cCCCccceeeEeeCCeeeeeeeeeccc---eec------ccccee
Q 010134 366 ERAYKYRP-----VKVVEFERPRQQCVVY------LDLKREECENLFPSGRVYSQAFHLGGQ---GFF------LSAHCN 425 (517)
Q Consensus 366 ~~i~v~g~-----~~~v~~y~p~~~~W~~------l~~~r~~~~~a~~~g~iY~~~fviGG~---~~~------~~~~~~ 425 (517)
|.+++.|+ ...++.|+...+.|.. +|..-.-|+.+..+.+|| ++||. |.+ +.+..|
T Consensus 43 ELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtril----vFGGMvEYGkYsNdLYELQasRW 118 (830)
T KOG4152|consen 43 ELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRIL----VFGGMVEYGKYSNDLYELQASRW 118 (830)
T ss_pred eeEEEecCCcccchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEE----EEccEeeeccccchHHHhhhhhh
Confidence 44555433 3678899999999997 556666778888899999 99996 322 233344
Q ss_pred --------------cccCccceEEEEECCee
Q 010134 426 --------------MDQQSSFHCFGLFLGMQ 442 (517)
Q Consensus 426 --------------m~~~R~~~~~~~~~g~i 442 (517)
.+.||..|.|.+.+++-
T Consensus 119 eWkrlkp~~p~nG~pPCPRlGHSFsl~gnKc 149 (830)
T KOG4152|consen 119 EWKRLKPKTPKNGPPPCPRLGHSFSLVGNKC 149 (830)
T ss_pred hHhhcCCCCCCCCCCCCCccCceeEEeccEe
Confidence 78899999998876553
No 41
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.43 E-value=0.0001 Score=73.96 Aligned_cols=90 Identities=12% Similarity=0.303 Sum_probs=75.3
Q ss_pred EEEEeehhhhcccCHHHHHhhcCCCCCC-cceeEEEccCCCCHHHHHHHHhccccceeecCCcccHHHHHHHHhhcCchh
Q 010134 146 KTLHISSPILAAKSPFFYKLFSNGMKES-EQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDVLMAADKFEVAS 224 (517)
Q Consensus 146 ~~f~aHr~ILaa~S~yF~amf~~~~~Es-~~~~I~l~~~~~~~~~f~~lL~fiYTg~l~i~~~~~v~~lL~aAd~~~v~~ 224 (517)
+.|.|.+-+|-..=.||+..+.....++ ...+|.|.. ..+-.+|+=|++|+......+++ .||..||.-|++|||+.
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisV-hCDv~iF~WLm~yv~~~~p~l~~-~NvvsIliSS~FL~M~~ 91 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISV-HCDVHIFEWLMRYVKGEPPSLTP-SNVVSILISSEFLQMES 91 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEE-ecChhHHHHHHHHhhcCCCcCCc-CcEEEeEehhhhhccHH
Confidence 5899999999999999999996522222 123344442 38999999999999998888999 99999999999999999
Q ss_pred HHHHHHHHhhCCCC
Q 010134 225 CMRYCSRLLRNMPM 238 (517)
Q Consensus 225 L~~~C~~~L~~~~l 238 (517)
|.+.|..|+.+ ++
T Consensus 92 Lve~cl~y~~~-~~ 104 (317)
T PF11822_consen 92 LVEECLQYCHD-HM 104 (317)
T ss_pred HHHHHHHHHHH-hH
Confidence 99999999987 54
No 42
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=97.26 E-value=0.0011 Score=64.09 Aligned_cols=92 Identities=15% Similarity=0.291 Sum_probs=77.3
Q ss_pred EEEEE--EEEEeehhhhcccCHHHHHhhcCCCC--CCcceeEEEccCCCCHHHHHHHHhccccceeecCC-cccHHHHHH
Q 010134 141 TVVRV--KTLHISSPILAAKSPFFYKLFSNGMK--ESEQRHVALRINASEEAALMELLNFMYSNTLSTTA-APALLDVLM 215 (517)
Q Consensus 141 V~l~v--~~f~aHr~ILaa~S~yF~amf~~~~~--Es~~~~I~l~~~~~~~~~f~~lL~fiYTg~l~i~~-~~~v~~lL~ 215 (517)
|.|.| ..|..++.-|.....||++||.+++. -...+.|-|+ =+|.-|..+|+||-.|.+.+.. ...+.+|+.
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFID---RSpKHF~~ILNfmRdGdv~LPe~~kel~El~~ 83 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFID---RSPKHFDTILNFMRDGDVDLPESEKELKELLR 83 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEec---CChhHHHHHHHhhhcccccCccchHHHHHHHH
Confidence 44556 68999999999999999999999773 3344668775 8999999999999988887654 146789999
Q ss_pred HHhhcCchhHHHHHHHHhhC
Q 010134 216 AADKFEVASCMRYCSRLLRN 235 (517)
Q Consensus 216 aAd~~~v~~L~~~C~~~L~~ 235 (517)
=|.+|.++.|.+.|..-+..
T Consensus 84 EA~fYlL~~Lv~~C~~~i~~ 103 (230)
T KOG2716|consen 84 EAEFYLLDGLVELCQSAIAR 103 (230)
T ss_pred HHHHhhHHHHHHHHHHHhhh
Confidence 99999999999999998776
No 43
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=96.99 E-value=0.00079 Score=56.10 Aligned_cols=86 Identities=15% Similarity=0.276 Sum_probs=64.6
Q ss_pred EEEEE--EEEEeehhhhc-ccCHHHHHhhcCC---CCCCcceeEEEccCCCCHHHHHHHHhcccc-ceeecCCcccHHHH
Q 010134 141 TVVRV--KTLHISSPILA-AKSPFFYKLFSNG---MKESEQRHVALRINASEEAALMELLNFMYS-NTLSTTAAPALLDV 213 (517)
Q Consensus 141 V~l~v--~~f~aHr~ILa-a~S~yF~amf~~~---~~Es~~~~I~l~~~~~~~~~f~~lL~fiYT-g~l~i~~~~~v~~l 213 (517)
|+|.| +.|.+-+..|. ....+|.+|+.+. .....+..+-|+ -++..|+.+|+|+.+ +.+.......+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiD---Rdp~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFID---RDPELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEES---S-HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEec---cChhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 56777 78999999998 5567999999864 333455667774 899999999999999 77776533678999
Q ss_pred HHHHhhcCchhH-HHHH
Q 010134 214 LMAADKFEVASC-MRYC 229 (517)
Q Consensus 214 L~aAd~~~v~~L-~~~C 229 (517)
+.-|.+|+++.| ++.|
T Consensus 78 ~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 78 LEEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHHT-HHHHBHHC
T ss_pred HHHHHHcCCCccccCCC
Confidence 999999999999 7766
No 44
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=96.68 E-value=0.0063 Score=50.10 Aligned_cols=72 Identities=24% Similarity=0.332 Sum_probs=56.7
Q ss_pred EEEEeehhhhcccCHHHHHhhcCCC--CCCcceeEEEccCCCCHHHHHHHHhcc-----ccce------eecCCcccHHH
Q 010134 146 KTLHISSPILAAKSPFFYKLFSNGM--KESEQRHVALRINASEEAALMELLNFM-----YSNT------LSTTAAPALLD 212 (517)
Q Consensus 146 ~~f~aHr~ILaa~S~yF~amf~~~~--~Es~~~~I~l~~~~~~~~~f~~lL~fi-----YTg~------l~i~~~~~v~~ 212 (517)
.+|-..|-+ |.-|+-.|+||+|+. .|...++|.++ ++...+++.+-+|+ ||+. .+|.+ +.+++
T Consensus 27 hefiikre~-AmtSgTiraml~gpg~~se~~~n~v~f~--di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ipp-emale 102 (112)
T KOG3473|consen 27 HEFIIKREH-AMTSGTIRAMLSGPGVFSEAEKNEVYFR--DIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPP-EMALE 102 (112)
T ss_pred cEEEEeehh-hhhhhHHHHHHcCCccccccccceEEec--cchHHHHHHHHHHhhheeeeccccccCCCCCCCH-HHHHH
Confidence 356665554 457999999999865 55566889999 99999999999988 5554 23555 89999
Q ss_pred HHHHHhhcC
Q 010134 213 VLMAADKFE 221 (517)
Q Consensus 213 lL~aAd~~~ 221 (517)
||.||+++.
T Consensus 103 LL~aAn~Le 111 (112)
T KOG3473|consen 103 LLMAANYLE 111 (112)
T ss_pred HHHHhhhhc
Confidence 999999875
No 45
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=96.49 E-value=0.004 Score=45.19 Aligned_cols=46 Identities=20% Similarity=0.099 Sum_probs=33.8
Q ss_pred CccceeeEeeCCeeeeeeeeeccceeccccceecccCccceEEEEECCeeccCCcccccccCcceeeCc---cceeccCC
Q 010134 393 KREECENLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARSKP---TEEFVSKY 469 (517)
Q Consensus 393 ~r~~~~~a~~~g~iY~~~fviGG~~~~~~~~~~m~~~R~~~~~~~~~g~i~~~~l~s~V~~~~~E~ydp---~W~~v~~l 469 (517)
+|..|++++++++|| ++||++... .....+. | +.||+ +|+.+++|
T Consensus 1 ~r~~hs~~~~~~kiy----v~GG~~~~~----------------------~~~~~~~-v-----~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIY----VFGGYGTDN----------------------GGSSSND-V-----WVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEE----EECCcccCC----------------------CCcccce-e-----EEEECCCCEEeecCCC
Confidence 578899999999999 999971000 1112234 4 89999 99999998
Q ss_pred C
Q 010134 470 K 470 (517)
Q Consensus 470 ~ 470 (517)
|
T Consensus 49 g 49 (49)
T PF07646_consen 49 G 49 (49)
T ss_pred C
Confidence 6
No 46
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=95.94 E-value=0.015 Score=49.39 Aligned_cols=78 Identities=8% Similarity=0.190 Sum_probs=57.0
Q ss_pred EEEEE---EEEEeehhhhcccCHHHHHhhcCCCCCC-cceeEEEccCCCCHHHHHHHHhcccccee-----------e--
Q 010134 141 TVVRV---KTLHISSPILAAKSPFFYKLFSNGMKES-EQRHVALRINASEEAALMELLNFMYSNTL-----------S-- 203 (517)
Q Consensus 141 V~l~v---~~f~aHr~ILaa~S~yF~amf~~~~~Es-~~~~I~l~~~~~~~~~f~~lL~fiYTg~l-----------~-- 203 (517)
|+|.. .+|.+.+.+.. .|..++.|+.+.-.+. ....|.++ +++..+|+.+++|++--.- +
T Consensus 4 v~L~S~Dg~~f~v~~~~a~-~S~~i~~~l~~~~~~~~~~~~Ipl~--~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 4 IKLISSDGEVFEVEREVAR-QSKTIKAMIEDLGVDDENNNPIPLP--NVTSKILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred EEEEeCCCCEEEecHHHHH-HHHHHHHHHHccCcccCCCCCccCC--CcCHHHHHHHHHHHHHcccCCCCccccccccHH
Confidence 45555 58999999775 8999999998633222 22468887 9999999999999963211 1
Q ss_pred ------cCCcccHHHHHHHHhhcCc
Q 010134 204 ------TTAAPALLDVLMAADKFEV 222 (517)
Q Consensus 204 ------i~~~~~v~~lL~aAd~~~v 222 (517)
++. +++.+|+.||++|++
T Consensus 81 D~~F~~~d~-~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQ-ETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCH-HHHHHHHHHHHhhCC
Confidence 333 578899999998875
No 47
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.64 E-value=0.062 Score=54.76 Aligned_cols=38 Identities=18% Similarity=0.224 Sum_probs=30.5
Q ss_pred ceEEEecCCCCceeecCC--C--ccceeeEeeCC-eeeeeeeeeccc
Q 010134 375 KVVEFERPRQQCVVYLDL--K--REECENLFPSG-RVYSQAFHLGGQ 416 (517)
Q Consensus 375 ~~v~~y~p~~~~W~~l~~--~--r~~~~~a~~~g-~iY~~~fviGG~ 416 (517)
..+..|||..|+|..|+. | ..++.++.+++ .|| +.||.
T Consensus 113 nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~----f~GGv 155 (381)
T COG3055 113 NDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIY----FFGGV 155 (381)
T ss_pred eeeEEecCCCChhheeccccccccccceeEecCCceEE----EEccc
Confidence 567889999999999653 3 34567778888 999 99997
No 48
>smart00612 Kelch Kelch domain.
Probab=95.45 E-value=0.018 Score=40.51 Aligned_cols=31 Identities=19% Similarity=0.132 Sum_probs=25.7
Q ss_pred cceEEEecCCCCceee---cCCCccceeeEeeCC
Q 010134 374 VKVVEFERPRQQCVVY---LDLKREECENLFPSG 404 (517)
Q Consensus 374 ~~~v~~y~p~~~~W~~---l~~~r~~~~~a~~~g 404 (517)
...+++|||.+++|.. |+.+|..+++++++|
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred eeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 3678999999999988 777888888887664
No 49
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=95.34 E-value=0.052 Score=56.19 Aligned_cols=64 Identities=13% Similarity=-0.048 Sum_probs=49.7
Q ss_pred ceEEEecCCCCceeec-----CCCccceeeEeeCCeeeeeeeeeccc-----eeccccc---------ee--------cc
Q 010134 375 KVVEFERPRQQCVVYL-----DLKREECENLFPSGRVYSQAFHLGGQ-----GFFLSAH---------CN--------MD 427 (517)
Q Consensus 375 ~~v~~y~p~~~~W~~l-----~~~r~~~~~a~~~g~iY~~~fviGG~-----~~~~~~~---------~~--------m~ 427 (517)
+..+.++.++++|..+ |.+|.+|.+++...+|. ++||+ ....-+. .| -+
T Consensus 154 kD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~li----lFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~P 229 (521)
T KOG1230|consen 154 KDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLI----LFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGP 229 (521)
T ss_pred hheeeeeeccchheeeccCCCCCCCccceeEEeeeeEE----EEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCC
Confidence 6788899999999994 56799999999998888 99996 1111222 23 58
Q ss_pred cCccceEEEEE-CCee
Q 010134 428 QQSSFHCFGLF-LGMQ 442 (517)
Q Consensus 428 ~~R~~~~~~~~-~g~i 442 (517)
.||++||+.+. .|.|
T Consensus 230 tpRSGcq~~vtpqg~i 245 (521)
T KOG1230|consen 230 TPRSGCQFSVTPQGGI 245 (521)
T ss_pred CCCCcceEEecCCCcE
Confidence 89999999987 6666
No 50
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=95.17 E-value=0.019 Score=41.40 Aligned_cols=45 Identities=11% Similarity=0.017 Sum_probs=24.2
Q ss_pred CccceeeEee-CCeeeeeeeeeccceeccccceecccCccceEEEEECCeeccCCcccccccCcceeeCc---cceeccC
Q 010134 393 KREECENLFP-SGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARSKP---TEEFVSK 468 (517)
Q Consensus 393 ~r~~~~~a~~-~g~iY~~~fviGG~~~~~~~~~~m~~~R~~~~~~~~~g~i~~~~l~s~V~~~~~E~ydp---~W~~v~~ 468 (517)
+|..|+++.+ ++.|| ++||+... ...++. + +.||+ +|+.+++
T Consensus 1 pR~~h~~~~~~~~~i~----v~GG~~~~------------------------~~~~~d-~-----~~~d~~~~~W~~~~~ 46 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIY----VFGGRDSS------------------------GSPLND-L-----WIFDIETNTWTRLPS 46 (49)
T ss_dssp --BS-EEEEE-TTEEE----EE--EEE-------------------------TEE----E-----EEEETTTTEEEE--S
T ss_pred CcceEEEEEEeCCeEE----EECCCCCC------------------------CcccCC-E-----EEEECCCCEEEECCC
Confidence 4778887777 58999 99997321 012345 3 89999 9999999
Q ss_pred CCc
Q 010134 469 YKG 471 (517)
Q Consensus 469 l~~ 471 (517)
||.
T Consensus 47 ~P~ 49 (49)
T PF13418_consen 47 MPS 49 (49)
T ss_dssp S--
T ss_pred CCC
Confidence 883
No 51
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=94.07 E-value=0.11 Score=49.43 Aligned_cols=88 Identities=16% Similarity=0.237 Sum_probs=65.6
Q ss_pred EEEEE--EEEEeehhhhcccC--HHHHHhhcCC---CCCCcceeEEEccCCCCHHHHHHHHhccccceeecCCcccHHHH
Q 010134 141 TVVRV--KTLHISSPILAAKS--PFFYKLFSNG---MKESEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDV 213 (517)
Q Consensus 141 V~l~v--~~f~aHr~ILaa~S--~yF~amf~~~---~~Es~~~~I~l~~~~~~~~~f~~lL~fiYTg~l~i~~~~~v~~l 213 (517)
|.+.+ +.|..-+--|..+= ....+||.+. -+|+++.-+-| |-++.-|+.+|+|+-.|.+.....-++.++
T Consensus 11 vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lI---DRsp~yFepIlNyLr~Gq~~~~s~i~~lgv 87 (302)
T KOG1665|consen 11 VRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLI---DRSPKYFEPILNYLRDGQIPSLSDIDCLGV 87 (302)
T ss_pred heeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEE---ccCchhhHHHHHHHhcCceeecCCccHHHH
Confidence 44444 45555555555443 3567888862 24455565666 588999999999999999986654789999
Q ss_pred HHHHhhcCchhHHHHHHH
Q 010134 214 LMAADKFEVASCMRYCSR 231 (517)
Q Consensus 214 L~aAd~~~v~~L~~~C~~ 231 (517)
|+.|++||+-.|+++-++
T Consensus 88 LeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 88 LEEARFFQILSLKDHLED 105 (302)
T ss_pred HHHhhHHhhHhHHhHHhh
Confidence 999999999999998887
No 52
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=93.43 E-value=0.053 Score=55.38 Aligned_cols=102 Identities=12% Similarity=0.033 Sum_probs=71.0
Q ss_pred CCchhHHhhhhc-CCCCCcccEEEEE---EEEEeehhhhcccCHHHHHhhcCCCCCCcceeEEEccCCCCHHHHHHHHhc
Q 010134 121 SPSGDEAANGNE-SSWSMDCSTVVRV---KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNF 196 (517)
Q Consensus 121 ~~~~~~l~~l~~-~~~~~~~DV~l~v---~~f~aHr~ILaa~S~yF~amf~~~~~Es~~~~I~l~~~~~~~~~f~~lL~f 196 (517)
+|...++..++. +..+.-.|+++.+ +.|.||+..|+++|.+|..-+..-+ -...+|+-. .+-+.+|..+++|
T Consensus 131 qP~aahi~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~--~~~heI~~~--~v~~~~f~~flk~ 206 (516)
T KOG0511|consen 131 QPPAAHIQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFY--VQGHEIEAH--RVILSAFSPFLKQ 206 (516)
T ss_pred CCcchHHHHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhc--cccCchhhh--hhhHhhhhHHHHH
Confidence 444556655554 4444556888887 5799999999999998865444322 122345333 5778999999999
Q ss_pred cccceeecCCcccHHHHHHHHhhcCchhHHH
Q 010134 197 MYSNTLSTTAAPALLDVLMAADKFEVASCMR 227 (517)
Q Consensus 197 iYTg~l~i~~~~~v~~lL~aAd~~~v~~L~~ 227 (517)
+|-..-.+-+ +.-..|+.+..+|+++.|..
T Consensus 207 lyl~~na~~~-~qynallsi~~kF~~e~l~~ 236 (516)
T KOG0511|consen 207 LYLNTNAEWK-DQYNALLSIEVKFSKEKLSL 236 (516)
T ss_pred HHHhhhhhhh-hHHHHHHhhhhhccHHHhHH
Confidence 9977433444 45678999999999987764
No 53
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=92.98 E-value=0.28 Score=51.12 Aligned_cols=91 Identities=15% Similarity=0.257 Sum_probs=68.1
Q ss_pred EEEEE--EEEEeehhhhcccC--HHHHHhhcCCCCCCccee--EEEccCCCCHHHHHHHHhccccceeecCCcccHH-HH
Q 010134 141 TVVRV--KTLHISSPILAAKS--PFFYKLFSNGMKESEQRH--VALRINASEEAALMELLNFMYSNTLSTTAAPALL-DV 213 (517)
Q Consensus 141 V~l~v--~~f~aHr~ILaa~S--~yF~amf~~~~~Es~~~~--I~l~~~~~~~~~f~~lL~fiYTg~l~i~~~~~v~-~l 213 (517)
|.|.| +.|...+.-|+... .+|.++|++.+.-.+... |-| |=+|+.|..||+|+-||++++.. .-.. .+
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI---DRDPdlFaviLn~LRTg~L~~~g-~~~~~ll 88 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI---DRDPDLFAVILNLLRTGDLDASG-VFPERLL 88 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe---cCCchHHHHHHHHHhcCCCCCcc-Cchhhhh
Confidence 55666 78888888887554 699999998776544433 555 48999999999999999999976 3444 44
Q ss_pred HHHHhhcCchhHHH---HHHHHhhC
Q 010134 214 LMAADKFEVASCMR---YCSRLLRN 235 (517)
Q Consensus 214 L~aAd~~~v~~L~~---~C~~~L~~ 235 (517)
+.=|.+|++..|.+ +|+..+..
T Consensus 89 hdEA~fYGl~~llrrl~~~~~~F~G 113 (465)
T KOG2714|consen 89 HDEAMFYGLTPLLRRLTLCEELFDG 113 (465)
T ss_pred hhhhhhcCcHHHHHHhhcCcccccc
Confidence 44899999999987 55554443
No 54
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=92.75 E-value=0.3 Score=44.98 Aligned_cols=98 Identities=12% Similarity=0.247 Sum_probs=70.0
Q ss_pred EEEEeehhhhcccCHHHHHhhcC-CCCCCcceeEEEccCCCCHHHHHHHHhccccceee---------------cCC---
Q 010134 146 KTLHISSPILAAKSPFFYKLFSN-GMKESEQRHVALRINASEEAALMELLNFMYSNTLS---------------TTA--- 206 (517)
Q Consensus 146 ~~f~aHr~ILaa~S~yF~amf~~-~~~Es~~~~I~l~~~~~~~~~f~~lL~fiYTg~l~---------------i~~--- 206 (517)
+.|.+-+.+.. .|...++++.. +..... ..|.|+ .+...+|+.+|+|++-=+-. ++.
T Consensus 15 ~~f~ve~~~a~-~s~~i~~~~~~~~~~~~~-~~IPl~--nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~ 90 (162)
T KOG1724|consen 15 EIFEVEEEVAR-QSQTISAHMIEDGCADEN-DPIPLP--NVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDA 90 (162)
T ss_pred ceeehhHHHHH-HhHHHHHHHHHcCCCccC-CccccC--ccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHH
Confidence 46777776665 78888888865 222221 457787 89999999999999862211 111
Q ss_pred ------cccHHHHHHHHhhcCchhHHHHHHHHhhCCCC---ChhhHHHHHH
Q 010134 207 ------APALLDVLMAADKFEVASCMRYCSRLLRNMPM---TPESALLYLE 248 (517)
Q Consensus 207 ------~~~v~~lL~aAd~~~v~~L~~~C~~~L~~~~l---~~~n~~~~l~ 248 (517)
..++.+|+.||++|+++.|...|++.+.. .+ +++....++.
T Consensus 91 ~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~-mikgktpeEir~~f~ 140 (162)
T KOG1724|consen 91 EFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVAN-MIKGKTPEEIREIFN 140 (162)
T ss_pred HHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHH-HHccCCHHHHHHHcC
Confidence 15789999999999999999999998776 44 5555554443
No 55
>smart00612 Kelch Kelch domain.
Probab=92.45 E-value=0.16 Score=35.47 Aligned_cols=16 Identities=6% Similarity=-0.089 Sum_probs=14.8
Q ss_pred eeeCc---cceeccCCCcc
Q 010134 457 ARSKP---TEEFVSKYKGN 472 (517)
Q Consensus 457 E~ydp---~W~~v~~l~~~ 472 (517)
|+||| +|+.+++||.+
T Consensus 18 ~~yd~~~~~W~~~~~~~~~ 36 (47)
T smart00612 18 EVYDPETNKWTPLPSMPTP 36 (47)
T ss_pred EEECCCCCeEccCCCCCCc
Confidence 99999 89999999877
No 56
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=92.43 E-value=0.6 Score=35.64 Aligned_cols=53 Identities=11% Similarity=0.150 Sum_probs=41.3
Q ss_pred EEEEE---EEEEeehhhhcccCHHHHHhhcCCCCCCcceeEEEccCCCCHHHHHHHHhccc
Q 010134 141 TVVRV---KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMY 198 (517)
Q Consensus 141 V~l~v---~~f~aHr~ILaa~S~yF~amf~~~~~Es~~~~I~l~~~~~~~~~f~~lL~fiY 198 (517)
|+|+. +.|.+.+.++. .|..++.|+.+.-.+.. .|.|+ +++..+|+.+++|++
T Consensus 3 v~L~SsDg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~--~Ipl~--~v~~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAK-QSKTIKNMLEDLGDEDE--PIPLP--NVSSRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHHHT-TSHHHHHHHHCTCCCGT--EEEET--TS-HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHHH-HhHHHHHHHhhhccccc--ccccC--ccCHHHHHHHHHHHH
Confidence 44555 68999998877 89999999986333322 68888 999999999999986
No 57
>PF13854 Kelch_5: Kelch motif
Probab=92.02 E-value=0.15 Score=35.67 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=21.6
Q ss_pred cCCCccceeeEeeCCeeeeeeeeeccce
Q 010134 390 LDLKREECENLFPSGRVYSQAFHLGGQG 417 (517)
Q Consensus 390 l~~~r~~~~~a~~~g~iY~~~fviGG~~ 417 (517)
+|.+|..|++++.+++|| +.||..
T Consensus 1 ~P~~R~~hs~~~~~~~iy----i~GG~~ 24 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIY----IFGGYS 24 (42)
T ss_pred CCCCccceEEEEECCEEE----EEcCcc
Confidence 478899999999999999 999973
No 58
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=91.95 E-value=0.25 Score=52.55 Aligned_cols=72 Identities=14% Similarity=-0.007 Sum_probs=52.7
Q ss_pred cccccccc-----ceEEEecCCCCceee------cCCCccceeeEeeCCeeeeeeeeeccc----eec------------
Q 010134 367 RAYKYRPV-----KVVEFERPRQQCVVY------LDLKREECENLFPSGRVYSQAFHLGGQ----GFF------------ 419 (517)
Q Consensus 367 ~i~v~g~~-----~~v~~y~p~~~~W~~------l~~~r~~~~~a~~~g~iY~~~fviGG~----~~~------------ 419 (517)
.+|++|+. ..++..|..+-.|.. .|.+|.-|++.+++|++| |.||. +..
T Consensus 217 kmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMy----vfGGWVPl~~~~~~~~~hekEWkC 292 (830)
T KOG4152|consen 217 KMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMY----VFGGWVPLVMDDVKVATHEKEWKC 292 (830)
T ss_pred eEEEEcccccccccceeEEecceeecccccccCCCCCCcccccceeecceeE----Eecceeeeeccccccccccceeee
Confidence 34455553 456666777778887 567899999999999999 99996 110
Q ss_pred -ccccee-------------------cccCccceEEEEECCee
Q 010134 420 -LSAHCN-------------------MDQQSSFHCFGLFLGMQ 442 (517)
Q Consensus 420 -~~~~~~-------------------m~~~R~~~~~~~~~g~i 442 (517)
.+-.|| .+.+|+.||.++++.++
T Consensus 293 Tssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRl 335 (830)
T KOG4152|consen 293 TSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRL 335 (830)
T ss_pred ccceeeeeecchheeeeeeccccccccccccccceeEEeccEE
Confidence 011232 68899999999999988
No 59
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.74 E-value=0.35 Score=49.46 Aligned_cols=47 Identities=17% Similarity=0.469 Sum_probs=37.3
Q ss_pred cceeccCCCcc-------------eEEEccccC--C--C---ceEEEe-e----ccee--------------EeCC-EEE
Q 010134 462 TEEFVSKYKGN-------------YTFTGGKAV--G--Y---RNLFAI-P----WTSF--------------MADD-SLY 501 (517)
Q Consensus 462 ~W~~v~~l~~~-------------iYv~GG~~~--~--~---~~v~~Y-P----W~~~--------------~~~~-~iY 501 (517)
.|+.++..|.. ||+.||... . . ++++.| | |... ++++ +||
T Consensus 71 ~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~ 150 (381)
T COG3055 71 GWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIY 150 (381)
T ss_pred CceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEE
Confidence 89999988865 999998532 2 1 778899 8 9887 7777 999
Q ss_pred EEcCccc
Q 010134 502 FINGILH 508 (517)
Q Consensus 502 viGG~~~ 508 (517)
+.||+.+
T Consensus 151 f~GGvn~ 157 (381)
T COG3055 151 FFGGVNQ 157 (381)
T ss_pred EEccccH
Confidence 9999854
No 60
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=89.33 E-value=0.29 Score=34.65 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=19.7
Q ss_pred CcceEEEccccC-CC--ceEEEe-e----ccee
Q 010134 470 KGNYTFTGGKAV-GY--RNLFAI-P----WTSF 494 (517)
Q Consensus 470 ~~~iYv~GG~~~-~~--~~v~~Y-P----W~~~ 494 (517)
...|||+||.+. .. +++++| | |+.+
T Consensus 11 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 43 (47)
T PF01344_consen 11 GNKIYVIGGYDGNNQPTNSVEVYDPETNTWEEL 43 (47)
T ss_dssp TTEEEEEEEBESTSSBEEEEEEEETTTTEEEEE
T ss_pred CCEEEEEeeecccCceeeeEEEEeCCCCEEEEc
Confidence 344899999987 33 899999 7 9865
No 61
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=88.74 E-value=0.56 Score=33.74 Aligned_cols=27 Identities=11% Similarity=-0.149 Sum_probs=23.3
Q ss_pred ceEEEecCCCCceee---cCCCccceeeEe
Q 010134 375 KVVEFERPRQQCVVY---LDLKREECENLF 401 (517)
Q Consensus 375 ~~v~~y~p~~~~W~~---l~~~r~~~~~a~ 401 (517)
+.+..||+.+++|.. +|.+|..|++++
T Consensus 19 nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 19 NDVWVFDLDTNTWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred cCEEEEECCCCEEEECCCCCCCccceEEEE
Confidence 578899999999999 677899888875
No 62
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=87.28 E-value=0.39 Score=38.52 Aligned_cols=44 Identities=23% Similarity=0.505 Sum_probs=30.9
Q ss_pred CCcccHHHHHHHHhhcCchhHHHHHHHHhhCCCC---ChhhHHHHHHhc
Q 010134 205 TAAPALLDVLMAADKFEVASCMRYCSRLLRNMPM---TPESALLYLELP 250 (517)
Q Consensus 205 ~~~~~v~~lL~aAd~~~v~~L~~~C~~~L~~~~l---~~~n~~~~l~lA 250 (517)
+. +.+.+|+.||++|+|+.|...|++++.. .+ +++..-.++.+.
T Consensus 12 ~~-~~L~~l~~AA~yL~I~~L~~~~~~~iA~-~i~gks~eeir~~fgi~ 58 (78)
T PF01466_consen 12 DN-DELFDLLNAANYLDIKGLLDLCCKYIAN-MIKGKSPEEIRKYFGIE 58 (78)
T ss_dssp -H-HHHHHHHHHHHHHT-HHHHHHHHHHHHH-HHTTS-HHHHHHHHT--
T ss_pred CH-HHHHHHHHHHHHHcchHHHHHHHHHHHH-HhcCCCHHHHHHHcCCC
Confidence 44 6899999999999999999999998877 44 444444444433
No 63
>PF13964 Kelch_6: Kelch motif
Probab=87.14 E-value=0.56 Score=33.81 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=21.8
Q ss_pred cccccccc-------cceEEEecCCCCceee---cCCCc
Q 010134 366 ERAYKYRP-------VKVVEFERPRQQCVVY---LDLKR 394 (517)
Q Consensus 366 ~~i~v~g~-------~~~v~~y~p~~~~W~~---l~~~r 394 (517)
+.||+.|+ .+.+++|||.+++|.. |+.+|
T Consensus 12 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 12 GKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 56777554 3679999999999999 44444
No 64
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=86.81 E-value=0.69 Score=33.24 Aligned_cols=32 Identities=16% Similarity=0.136 Sum_probs=22.2
Q ss_pred CCeeeeeeeeeccce---ecccccee--------------cccCccceEEEEE
Q 010134 403 SGRVYSQAFHLGGQG---FFLSAHCN--------------MDQQSSFHCFGLF 438 (517)
Q Consensus 403 ~g~iY~~~fviGG~~---~~~~~~~~--------------m~~~R~~~~~~~~ 438 (517)
+++|| |+||.. ....+.+| ++.+|..|+++++
T Consensus 1 g~~~~----vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLY----VFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEE----EECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 46788 999974 22233443 8889999988764
No 65
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=86.44 E-value=0.37 Score=49.17 Aligned_cols=135 Identities=16% Similarity=0.232 Sum_probs=105.7
Q ss_pred EEEEeehhhhcccCHHHHHhhcCCCCCCcceeEEEccCCCCHHHHHHHHhccccceeecCC-cccHHHHHHHHhhcCchh
Q 010134 146 KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLSTTA-APALLDVLMAADKFEVAS 224 (517)
Q Consensus 146 ~~f~aHr~ILaa~S~yF~amf~~~~~Es~~~~I~l~~~~~~~~~f~~lL~fiYTg~l~i~~-~~~v~~lL~aAd~~~v~~ 224 (517)
..+++|+.+|+..|+.|..+....-.-+..+.+.+. ..+...+..+..++|.+ ++..+ ..-...++.+...|-++.
T Consensus 36 ~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~~~~~~v~~ 112 (319)
T KOG1778|consen 36 DLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKIL--GVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLALSHVYVVPQ 112 (319)
T ss_pred hhhHHHHhcccccchHHHHHHhhhcchhhhhcceee--cccccccchhhhhhccc-hhhhHHHHHHHHHHhhhhhhhccC
Confidence 479999999999999999887765222233445666 78889999999999988 43332 123467777778899999
Q ss_pred HHHHHHHHhhCCCCChhhHHHHHHhccccccccChHHHHHHHHHHHHHHHHHHhhccHHHHHhc
Q 010134 225 CMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEWARAQ 288 (517)
Q Consensus 225 L~~~C~~~L~~~~l~~~n~~~~l~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~f~eeWi~~~ 288 (517)
++.-|...+..-.++..|++..+.++..+ ....|..++...+...|..... ++.|....
T Consensus 113 ~~~d~~~~~~~~~~~~r~~flvl~~~~~~----~~~~lr~a~hss~~~~~~~H~~-t~~~~~~~ 171 (319)
T KOG1778|consen 113 PKADCDPILECGLFDKRNVFLVLQLAEHC----DFSDLRRAKHSSIMLLFDLHLQ-TEKWFAYT 171 (319)
T ss_pred ccccCCccccchhhhhHHHHHHHHHHHhc----ccchHHHHHHHHHHHHHHHHhc-ccCceeee
Confidence 99999888876457888999999999888 5678999999999999999888 77776654
No 66
>PLN02772 guanylate kinase
Probab=84.15 E-value=1.3 Score=46.58 Aligned_cols=47 Identities=9% Similarity=-0.031 Sum_probs=38.8
Q ss_pred cccccccc-------cceEEEecCCCCceee------cCCCccceeeEee-CCeeeeeeeeeccc
Q 010134 366 ERAYKYRP-------VKVVEFERPRQQCVVY------LDLKREECENLFP-SGRVYSQAFHLGGQ 416 (517)
Q Consensus 366 ~~i~v~g~-------~~~v~~y~p~~~~W~~------l~~~r~~~~~a~~-~g~iY~~~fviGG~ 416 (517)
+.+|++|+ ...+++||+.+++|.. .|.+|.+|+++++ +++|+ |+++.
T Consensus 35 dk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~ril----v~~~~ 95 (398)
T PLN02772 35 DKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRIL----VIKKG 95 (398)
T ss_pred CEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEE----EEeCC
Confidence 67888654 2578999999999998 5778999999887 67999 99875
No 67
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=83.99 E-value=2.5 Score=36.95 Aligned_cols=89 Identities=15% Similarity=0.301 Sum_probs=60.1
Q ss_pred EEEEeehhhhcccCHHHHHhhcCCCCCCcceeEEEccCCCCHHHHHHHHhcccc--ceeecCC-----------------
Q 010134 146 KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYS--NTLSTTA----------------- 206 (517)
Q Consensus 146 ~~f~aHr~ILaa~S~yF~amf~~~~~Es~~~~I~l~~~~~~~~~f~~lL~fiYT--g~l~i~~----------------- 206 (517)
+.|.+...+ |-+|-..+.|+.. +.++ .+.++.+.+...+|..+++|+-. +++..+.
T Consensus 12 e~F~vd~~i-AerSiLikN~l~d-~~~~---n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~wdr~ 86 (158)
T COG5201 12 EIFRVDENI-AERSILIKNMLCD-STAC---NYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFWDRF 86 (158)
T ss_pred cEEEehHHH-HHHHHHHHHHhcc-cccc---CCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCccHHHHH
Confidence 355555443 5577777777653 2222 23444448999999999999953 3222110
Q ss_pred -----cccHHHHHHHHhhcCchhHHHHHHHHhhCCCCCh
Q 010134 207 -----APALLDVLMAADKFEVASCMRYCSRLLRNMPMTP 240 (517)
Q Consensus 207 -----~~~v~~lL~aAd~~~v~~L~~~C~~~L~~~~l~~ 240 (517)
.+++.++..+|+++.++.|.++|+..+.. .|..
T Consensus 87 Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivae-mirg 124 (158)
T COG5201 87 FMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAE-MIRG 124 (158)
T ss_pred HHHhhHHHHHHHHHhhccccchHHHHHHHHHHHH-HHcc
Confidence 14678999999999999999999998877 4443
No 68
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=83.03 E-value=3.9 Score=40.81 Aligned_cols=74 Identities=14% Similarity=0.192 Sum_probs=45.4
Q ss_pred cccCccceEEEEE--CCee------ccCCcccccccCcceeeCccceeccCCCcceEEEccccCCCceEEEee-------
Q 010134 426 MDQQSSFHCFGLF--LGMQ------EKGSVSFAVDYEFAARSKPTEEFVSKYKGNYTFTGGKAVGYRNLFAIP------- 490 (517)
Q Consensus 426 m~~~R~~~~~~~~--~g~i------~~~~l~s~V~~~~~E~ydp~W~~v~~l~~~iYv~GG~~~~~~~v~~YP------- 490 (517)
.+.+|..|.+-++ .|+- +...+... ||-...|..|---|-.+|++.= ..|..+....|
T Consensus 84 vP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~------qRTTenWNsVvDC~P~VfLiDl-eFGC~tah~lpEl~dG~S 156 (337)
T PF03089_consen 84 VPEARYGHTINVVHSRGKTACVLFGGRSYMPPG------QRTTENWNSVVDCPPQVFLIDL-EFGCCTAHTLPELQDGQS 156 (337)
T ss_pred CCcccccceEEEEEECCcEEEEEECCcccCCcc------ccchhhcceeccCCCeEEEEec-cccccccccchhhcCCeE
Confidence 8999999988665 3433 11222332 5554489999998888999851 11111122224
Q ss_pred -cceeEeCCEEEEEcCc
Q 010134 491 -WTSFMADDSLYFINGI 506 (517)
Q Consensus 491 -W~~~~~~~~iYviGG~ 506 (517)
-..++-+|.+|++||-
T Consensus 157 FHvslar~D~VYilGGH 173 (337)
T PF03089_consen 157 FHVSLARNDCVYILGGH 173 (337)
T ss_pred EEEEEecCceEEEEccE
Confidence 1123779999999994
No 69
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=74.64 E-value=2.3 Score=30.44 Aligned_cols=12 Identities=25% Similarity=0.648 Sum_probs=11.3
Q ss_pred EeCCEEEEEcCc
Q 010134 495 MADDSLYFINGI 506 (517)
Q Consensus 495 ~~~~~iYviGG~ 506 (517)
+++++|||+||.
T Consensus 9 ~~~~kiyv~GG~ 20 (49)
T PF07646_consen 9 VLDGKIYVFGGY 20 (49)
T ss_pred EECCEEEEECCc
Confidence 789999999997
No 70
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=72.08 E-value=11 Score=34.64 Aligned_cols=99 Identities=12% Similarity=0.114 Sum_probs=72.6
Q ss_pred CCCCcccEEEEE--EEEEeehhhhcccCHHHHHhhcCCCCCC----cceeEEEccCCCCHHHHHHHHhccccceeecCCc
Q 010134 134 SWSMDCSTVVRV--KTLHISSPILAAKSPFFYKLFSNGMKES----EQRHVALRINASEEAALMELLNFMYSNTLSTTAA 207 (517)
Q Consensus 134 ~~~~~~DV~l~v--~~f~aHr~ILaa~S~yF~amf~~~~~Es----~~~~I~l~~~~~~~~~f~~lL~fiYTg~l~i~~~ 207 (517)
++|...=|.|.| ..|..-|.-|.--+.-|..-|...-.+. ...--.+- |-+|.-|..+|+|+-.|++.++.
T Consensus 16 ~~g~s~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlI--DRDP~~FgpvLNylRhgklvl~~- 92 (210)
T KOG2715|consen 16 GNGVSLWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLI--DRDPFYFGPVLNYLRHGKLVLNK- 92 (210)
T ss_pred CCCceEEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEe--ccCcchHHHHHHHHhcchhhhhh-
Confidence 344334566666 5788899999988866665554422221 11123344 68899999999999999999987
Q ss_pred ccHHHHHHHHhhcCchhHHHHHHHHhhC
Q 010134 208 PALLDVLMAADKFEVASCMRYCSRLLRN 235 (517)
Q Consensus 208 ~~v~~lL~aAd~~~v~~L~~~C~~~L~~ 235 (517)
-.-..+|.-|++|.++.|..+..+.+..
T Consensus 93 l~eeGvL~EAefyn~~~li~likd~i~d 120 (210)
T KOG2715|consen 93 LSEEGVLEEAEFYNDPSLIQLIKDRIQD 120 (210)
T ss_pred hhhhccchhhhccCChHHHHHHHHHHHH
Confidence 5667899999999999999988887776
No 71
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=67.02 E-value=24 Score=35.63 Aligned_cols=102 Identities=16% Similarity=0.231 Sum_probs=65.2
Q ss_pred CCchhHHhhhhcCCCCCcccEEEEE--EEEEeehhhhcccCH-HHHHhhcCCCCC---CcceeEEEccCCCCHHHHHHHH
Q 010134 121 SPSGDEAANGNESSWSMDCSTVVRV--KTLHISSPILAAKSP-FFYKLFSNGMKE---SEQRHVALRINASEEAALMELL 194 (517)
Q Consensus 121 ~~~~~~l~~l~~~~~~~~~DV~l~v--~~f~aHr~ILaa~S~-yF~amf~~~~~E---s~~~~I~l~~~~~~~~~f~~lL 194 (517)
.|+++..+.-+-...+.---+++.+ -.|...+.+|.+.-. -.-.||.+++.= ...++.++- .+++..+|+++|
T Consensus 78 ~ps~~~~~s~~G~~pg~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVA-dGi~s~vFRAIL 156 (438)
T KOG3840|consen 78 GPAHEMLMSQLGCSPGEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVA-DGMTSSCFRAIL 156 (438)
T ss_pred CchhhhhhhhcCCCCCCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehh-cchhHHHHHHHH
Confidence 4445555544444444444466665 467777777764321 223566554321 223455554 279999999999
Q ss_pred hccccceeecCCcccHHHHHHHHhhcCch
Q 010134 195 NFMYSNTLSTTAAPALLDVLMAADKFEVA 223 (517)
Q Consensus 195 ~fiYTg~l~i~~~~~v~~lL~aAd~~~v~ 223 (517)
+|--||.+...+.-.|.+|-+|.|++.|+
T Consensus 157 dYYksG~iRCP~~vSvpELrEACDYLlip 185 (438)
T KOG3840|consen 157 DYYQSGTMRCPSSVSVSELREACDYLLVP 185 (438)
T ss_pred HHHhcCceeCCCCCchHHHHhhcceEEee
Confidence 99999999877645788888888887665
No 72
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=62.25 E-value=9.2 Score=41.08 Aligned_cols=22 Identities=23% Similarity=0.191 Sum_probs=16.9
Q ss_pred CCCccceeeEeeCC--eeeeeeeeeccc
Q 010134 391 DLKREECENLFPSG--RVYSQAFHLGGQ 416 (517)
Q Consensus 391 ~~~r~~~~~a~~~g--~iY~~~fviGG~ 416 (517)
|..|.+|..+...+ +|| .-||.
T Consensus 258 p~~RgGHQMV~~~~~~CiY----LYGGW 281 (723)
T KOG2437|consen 258 PGMRGGHQMVIDVQTECVY----LYGGW 281 (723)
T ss_pred ccccCcceEEEeCCCcEEE----EecCc
Confidence 34577888877666 999 99996
No 73
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=52.31 E-value=6.6 Score=40.00 Aligned_cols=50 Identities=18% Similarity=0.288 Sum_probs=39.7
Q ss_pred hHHHHHHHHhhCCCCChhhHHHHHHhccccccccChHHHHHHHHHHHHHHHHHHhh
Q 010134 224 SCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTK 279 (517)
Q Consensus 224 ~L~~~C~~~L~~~~l~~~n~~~~l~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~ 279 (517)
-|+..+.. ....++++|++.|+--++-. +++.|.+.|++|+..|+.+|+.
T Consensus 60 WLm~yv~~--~~p~l~~~NvvsIliSS~FL----~M~~Lve~cl~y~~~~~~~Iv~ 109 (317)
T PF11822_consen 60 WLMRYVKG--EPPSLTPSNVVSILISSEFL----QMESLVEECLQYCHDHMSEIVA 109 (317)
T ss_pred HHHHHhhc--CCCcCCcCcEEEeEehhhhh----ccHHHHHHHHHHHHHhHHHHHc
Confidence 34444444 22279999999999777666 5789999999999999999998
No 74
>PLN02772 guanylate kinase
Probab=46.94 E-value=32 Score=36.40 Aligned_cols=46 Identities=7% Similarity=-0.033 Sum_probs=34.5
Q ss_pred CccceeeEeeCCeeeeeeeeeccce-----------ecccccee--------cccCccceEEEEE-CCee
Q 010134 393 KREECENLFPSGRVYSQAFHLGGQG-----------FFLSAHCN--------MDQQSSFHCFGLF-LGMQ 442 (517)
Q Consensus 393 ~r~~~~~a~~~g~iY~~~fviGG~~-----------~~~~~~~~--------m~~~R~~~~~~~~-~g~i 442 (517)
++..+.+++++.++| |+||.. +......| -|.+|..|+++++ +++|
T Consensus 24 ~~~~~tav~igdk~y----v~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~ri 89 (398)
T PLN02772 24 PKNRETSVTIGDKTY----VIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRI 89 (398)
T ss_pred CCCcceeEEECCEEE----EEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceE
Confidence 566678888999999 999961 11233445 7889999999998 4666
No 75
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=44.53 E-value=6.5 Score=35.29 Aligned_cols=28 Identities=18% Similarity=0.039 Sum_probs=23.2
Q ss_pred ccchhhhhhhhhhhhhcCCC--C-CCCCCcc
Q 010134 66 ADWARDRKRRREDIKKDNGL--D-LSACPEE 93 (517)
Q Consensus 66 ~~~~~~~~~~r~~~~~~~~~--~-~~~~~~~ 93 (517)
.+||..+|++|++|+++.++ | ++++|++
T Consensus 116 ~~~G~~~fi~~~~Le~~~yl~dD~l~I~c~V 146 (147)
T cd03776 116 KGFGYVEFAHIEDLLQRGFVKNDTLLIKIEV 146 (147)
T ss_pred CCeeEceeeEHHHhhhCCCccCCEEEEEEEE
Confidence 46999999999999998776 4 7777765
No 76
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=43.72 E-value=7.3 Score=34.52 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=25.3
Q ss_pred ccchhhhhhhhhhhhh--cCCC--C-CCCCCcccccc
Q 010134 66 ADWARDRKRRREDIKK--DNGL--D-LSACPEEQILN 97 (517)
Q Consensus 66 ~~~~~~~~~~r~~~~~--~~~~--~-~~~~~~~~v~~ 97 (517)
.+||+.++++|++|++ +..+ | +++.|+++|+.
T Consensus 102 ~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~ 138 (139)
T cd03774 102 KDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 138 (139)
T ss_pred CccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence 5799999999999963 3444 4 89999998863
No 77
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=42.40 E-value=26 Score=28.99 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=27.7
Q ss_pred hhhHHHHHHhccccccccChHHHHHHHHHHHHHH
Q 010134 240 PESALLYLELPSSVLMGEAVQPLTDAARQYLASR 273 (517)
Q Consensus 240 ~~n~~~~l~lA~~~~~a~~~~~L~~~~~~fi~~n 273 (517)
.+++..++.+|..+ +++.|++.|.+++.+|
T Consensus 81 ~~~~~~ll~lA~~~----~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 81 DENVEELLELADKL----QIPELKKACEKFLQES 110 (111)
T ss_dssp TTTHHHHHHHHHHT----TBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh----CcHHHHHHHHHHHHhC
Confidence 78899999999999 6899999999999876
No 78
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=41.21 E-value=8.5 Score=34.98 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=23.3
Q ss_pred ccchhhhhhhhhhhhhcCCC--C-CCCCCcc
Q 010134 66 ADWARDRKRRREDIKKDNGL--D-LSACPEE 93 (517)
Q Consensus 66 ~~~~~~~~~~r~~~~~~~~~--~-~~~~~~~ 93 (517)
..||..+|++|++|+++.++ | ++++|++
T Consensus 123 ~~~G~~~fi~~~~Le~~~yl~dD~l~Irc~v 153 (154)
T cd03781 123 LGFGYPKFISHEDLKKRNYIKDDAIFLRASV 153 (154)
T ss_pred CccchhHeeEHHHHhhCCcccCCEEEEEEEe
Confidence 46999999999999998876 4 7887764
No 79
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=36.11 E-value=56 Score=32.24 Aligned_cols=35 Identities=26% Similarity=0.515 Sum_probs=25.4
Q ss_pred eEEEccccCCCceEEEe-e--------ccee---------------EeCCEEEEEcCcc
Q 010134 473 YTFTGGKAVGYRNLFAI-P--------WTSF---------------MADDSLYFINGIL 507 (517)
Q Consensus 473 iYv~GG~~~~~~~v~~Y-P--------W~~~---------------~~~~~iYviGG~~ 507 (517)
+.++||...+.+.+-.| | |... --||++.|+||..
T Consensus 80 ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 80 LLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSN 138 (243)
T ss_pred EEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcC
Confidence 88899987665556556 5 5443 4489999999964
No 80
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=35.40 E-value=32 Score=36.94 Aligned_cols=37 Identities=11% Similarity=0.150 Sum_probs=32.7
Q ss_pred CCChhhHHHHHHhccccccccChHHHHHHHHHHHHHHHHHH
Q 010134 237 PMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDM 277 (517)
Q Consensus 237 ~l~~~n~~~~l~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v 277 (517)
.+..+||+.++.+|++| ..+.|.+.|.+||..|....
T Consensus 184 ~~~~dtvi~tl~~AkKY----~VpaLer~CVkflr~~l~~~ 220 (521)
T KOG2075|consen 184 KLAADTVITTLYAAKKY----LVPALERQCVKFLRKNLMAD 220 (521)
T ss_pred hhhHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHhcCCh
Confidence 57899999999999999 58999999999999976543
No 81
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=34.39 E-value=96 Score=30.10 Aligned_cols=85 Identities=9% Similarity=0.151 Sum_probs=55.5
Q ss_pred EEEEeehhh-hc-ccCHHHHHhhcCCC--CCCcceeEEEccCCCCHHHHHHHHhccccceeecCCc-ccHHHHHHHHhhc
Q 010134 146 KTLHISSPI-LA-AKSPFFYKLFSNGM--KESEQRHVALRINASEEAALMELLNFMYSNTLSTTAA-PALLDVLMAADKF 220 (517)
Q Consensus 146 ~~f~aHr~I-La-a~S~yF~amf~~~~--~Es~~~~I~l~~~~~~~~~f~~lL~fiYTg~l~i~~~-~~v~~lL~aAd~~ 220 (517)
..++.|+.- |. -.-....+||++.. ....+...-|+ =+-..|+-+|+|+-|..+.+... .++..|..-|++|
T Consensus 17 G~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fID---RDG~lFRyvL~~LRt~~l~lpe~f~e~~~L~rEA~f~ 93 (221)
T KOG2723|consen 17 GAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFID---RDGFLFRYVLDYLRTKALLLPEDFAEVERLVREAEFF 93 (221)
T ss_pred CeEEEeeccceeechHHHHHhhcCCCCCccccccccEEEc---CCcchHHHHHHHhcccccccchhhhhHHHHHHHHHHH
Confidence 456655543 33 23344566777622 22233445554 66789999999999966655541 4688999999999
Q ss_pred CchhHHHHHHHHh
Q 010134 221 EVASCMRYCSRLL 233 (517)
Q Consensus 221 ~v~~L~~~C~~~L 233 (517)
+++.+...+.+-.
T Consensus 94 ~l~~~~~~l~~~~ 106 (221)
T KOG2723|consen 94 QLEAPVTYLLNSG 106 (221)
T ss_pred ccccHHHHHhccc
Confidence 9998887655433
No 82
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=33.29 E-value=3.5e+02 Score=27.49 Aligned_cols=37 Identities=24% Similarity=0.220 Sum_probs=22.8
Q ss_pred eEEEecCCCCceee--cCCCcc---ceeeEeeCCeeeeeeeeeccc
Q 010134 376 VVEFERPRQQCVVY--LDLKRE---ECENLFPSGRVYSQAFHLGGQ 416 (517)
Q Consensus 376 ~v~~y~p~~~~W~~--l~~~r~---~~~~a~~~g~iY~~~fviGG~ 416 (517)
.|...|..-.|... +|.-.. -|-+.+-++.|| ++||.
T Consensus 132 ~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VY----ilGGH 173 (337)
T PF03089_consen 132 QVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVY----ILGGH 173 (337)
T ss_pred eEEEEeccccccccccchhhcCCeEEEEEEecCceEE----EEccE
Confidence 34445555566555 443322 344556789999 99997
No 83
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=32.21 E-value=12 Score=33.94 Aligned_cols=27 Identities=4% Similarity=-0.282 Sum_probs=22.2
Q ss_pred cchhhhhhhhhhhhhc--CCC--C-CCCCCcc
Q 010134 67 DWARDRKRRREDIKKD--NGL--D-LSACPEE 93 (517)
Q Consensus 67 ~~~~~~~~~r~~~~~~--~~~--~-~~~~~~~ 93 (517)
.||..+|++|++|+++ .++ | +.++|++
T Consensus 115 ~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V 146 (147)
T cd03779 115 ASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVV 146 (147)
T ss_pred CcchhheeEHHHhcccCCCcEeCCEEEEEEEE
Confidence 5999999999999987 555 4 8887764
No 84
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=31.21 E-value=50 Score=26.95 Aligned_cols=62 Identities=13% Similarity=0.222 Sum_probs=39.6
Q ss_pred HHHHHHHhhcCchhHHHHHHHHhhCCCCC------------hhhHHHHHHhccccccccChHHHHHHHHHHHHHHHH
Q 010134 211 LDVLMAADKFEVASCMRYCSRLLRNMPMT------------PESALLYLELPSSVLMGEAVQPLTDAARQYLASRYK 275 (517)
Q Consensus 211 ~~lL~aAd~~~v~~L~~~C~~~L~~~~l~------------~~n~~~~l~lA~~~~~a~~~~~L~~~~~~fi~~nf~ 275 (517)
.+++..|..|++..|.+.|.+|+.. ++. .+....++.--+. +.. .=..+.+++..++..+..
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~-nf~~v~~~~~f~~L~~~~l~~iL~~~~l-~v~-~E~~v~~av~~W~~~~~~ 75 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAK-NFNEVSKSDEFLELPFDQLIEILSSDDL-NVS-SEDDVFEAVLRWLKHNPE 75 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH-THHHHTTSHHHHCS-HHHHHHHHHTSS---EC-TCCCHHHHHHHHHHCTHH
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHH-HHHHHccchhhhcCCHHHHHHHHhcccc-ccc-cHHHHHHHHHHHHHhCHH
Confidence 5789999999999999999999987 543 2223334432111 110 112577888888887754
No 85
>PF06577 DUF1134: Protein of unknown function (DUF1134); InterPro: IPR008325 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.65 E-value=1e+02 Score=28.07 Aligned_cols=22 Identities=23% Similarity=0.652 Sum_probs=17.0
Q ss_pred eEEEe--e-----ccee-EeCCEEEEEcCc
Q 010134 485 NLFAI--P-----WTSF-MADDSLYFINGI 506 (517)
Q Consensus 485 ~v~~Y--P-----W~~~-~~~~~iYviGG~ 506 (517)
-+.+| | |..+ .++++.|++||+
T Consensus 90 ~~LVYnL~~~~~iy~Rf~gv~GsAYlvgG~ 119 (160)
T PF06577_consen 90 FMLVYNLPDPDDIYQRFPGVEGSAYLVGGV 119 (160)
T ss_pred EEEEEcCCCHHHHhhhCCCccceEEEEccc
Confidence 35678 5 6666 789999999997
No 86
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=20.23 E-value=41 Score=35.37 Aligned_cols=28 Identities=14% Similarity=0.320 Sum_probs=26.6
Q ss_pred ccHHHHHHHHhhcCchhHHHHHHHHhhC
Q 010134 208 PALLDVLMAADKFEVASCMRYCSRLLRN 235 (517)
Q Consensus 208 ~~v~~lL~aAd~~~v~~L~~~C~~~L~~ 235 (517)
+||..++.+|.+|+++.|...|..|+.+
T Consensus 148 ~NvCmifdaA~ly~l~~Lt~~C~mfmDr 175 (620)
T KOG4350|consen 148 ENVCMIFDAAYLYQLTDLTDYCMMFMDR 175 (620)
T ss_pred cceeeeeeHHHHhcchHHHHHHHHHHhc
Confidence 7889999999999999999999999987
Done!