Query 010135
Match_columns 517
No_of_seqs 184 out of 306
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 21:28:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010135.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010135hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14683 CBM-like: Polysacchar 100.0 4.2E-46 9.2E-51 350.7 11.0 165 322-511 1-167 (167)
2 PF09284 RhgB_N: Rhamnogalactu 100.0 7.1E-35 1.5E-39 283.2 10.9 161 2-210 82-245 (249)
3 PF06045 Rhamnogal_lyase: Rham 99.9 1.1E-25 2.3E-30 216.0 6.0 86 1-86 118-203 (203)
4 PF14686 fn3_3: Polysaccharide 99.9 1.4E-22 3E-27 174.3 8.6 93 217-313 1-95 (95)
5 PF13620 CarboxypepD_reg: Carb 98.9 9.4E-09 2E-13 84.6 8.7 80 220-315 1-81 (82)
6 PF13715 DUF4480: Domain of un 98.5 7.2E-07 1.6E-11 74.6 10.5 88 220-329 1-88 (88)
7 cd03863 M14_CPD_II The second 98.1 1.3E-05 2.8E-10 85.1 9.6 78 218-315 296-373 (375)
8 cd03865 M14_CPE_H Peptidase M1 98.1 7.8E-06 1.7E-10 87.4 7.7 98 182-315 304-401 (402)
9 cd03864 M14_CPN Peptidase M14 98.1 1.4E-05 3E-10 85.4 9.2 76 219-315 316-391 (392)
10 cd06245 M14_CPD_III The third 97.9 5.7E-05 1.2E-09 80.0 9.7 75 219-315 287-361 (363)
11 cd03868 M14_CPD_I The first ca 97.7 8.8E-05 1.9E-09 78.8 8.4 77 218-314 295-371 (372)
12 cd03858 M14_CP_N-E_like Carbox 97.7 0.00013 2.9E-09 77.4 9.4 72 219-310 298-370 (374)
13 cd03867 M14_CPZ Peptidase M14- 97.4 0.00044 9.6E-09 74.1 8.9 72 219-310 318-391 (395)
14 cd03866 M14_CPM Peptidase M14 96.7 0.0059 1.3E-07 65.2 8.6 70 218-305 294-363 (376)
15 PF08400 phage_tail_N: Prophag 95.7 0.054 1.2E-06 49.7 8.5 78 220-306 4-81 (134)
16 PF08308 PEGA: PEGA domain; I 95.4 0.093 2E-06 42.2 7.8 45 269-317 25-69 (71)
17 PRK15036 hydroxyisourate hydro 95.2 0.045 9.8E-07 50.5 6.1 65 217-289 25-93 (137)
18 PF03422 CBM_6: Carbohydrate b 95.0 0.21 4.5E-06 44.0 9.7 81 419-512 43-124 (125)
19 cd03869 M14_CPX_like Peptidase 94.4 0.095 2.1E-06 56.5 7.1 68 217-305 328-395 (405)
20 cd00421 intradiol_dioxygenase 94.3 0.11 2.3E-06 48.3 6.2 64 217-283 10-80 (146)
21 PF05738 Cna_B: Cna protein B- 94.0 0.23 5.1E-06 39.4 7.0 45 263-308 21-67 (70)
22 KOG1948 Metalloproteinase-rela 94.0 0.15 3.3E-06 58.7 7.8 55 219-289 316-371 (1165)
23 PF09430 DUF2012: Protein of u 93.9 0.24 5.3E-06 44.6 7.5 40 261-303 22-61 (123)
24 COG3485 PcaH Protocatechuate 3 93.2 0.25 5.4E-06 49.3 7.0 65 217-284 71-144 (226)
25 cd03463 3,4-PCD_alpha Protocat 92.8 0.24 5.3E-06 48.0 6.1 64 216-282 34-106 (185)
26 cd03459 3,4-PCD Protocatechuat 92.1 0.34 7.3E-06 45.8 6.0 64 217-283 14-87 (158)
27 PF07210 DUF1416: Protein of u 91.6 1.7 3.7E-05 36.8 8.9 60 217-292 6-67 (85)
28 PF00775 Dioxygenase_C: Dioxyg 90.6 0.61 1.3E-05 45.1 6.2 64 217-283 28-98 (183)
29 TIGR02465 chlorocat_1_2 chloro 90.4 0.61 1.3E-05 47.2 6.2 65 216-283 96-165 (246)
30 PF03170 BcsB: Bacterial cellu 90.3 0.66 1.4E-05 52.5 7.2 78 406-497 29-111 (605)
31 KOG1948 Metalloproteinase-rela 90.2 0.73 1.6E-05 53.4 7.2 58 219-289 119-176 (1165)
32 TIGR02423 protocat_alph protoc 90.2 0.62 1.4E-05 45.4 5.9 65 216-283 37-111 (193)
33 PF07495 Y_Y_Y: Y_Y_Y domain; 89.7 0.44 9.6E-06 37.3 3.7 28 261-288 20-48 (66)
34 cd03464 3,4-PCD_beta Protocate 89.5 0.86 1.9E-05 45.4 6.4 66 215-283 62-137 (220)
35 TIGR02422 protocat_beta protoc 89.3 0.9 2E-05 45.2 6.4 67 214-283 56-132 (220)
36 cd03462 1,2-CCD chlorocatechol 89.2 0.61 1.3E-05 47.2 5.2 65 216-283 97-166 (247)
37 cd03458 Catechol_intradiol_dio 88.0 1.6 3.5E-05 44.4 7.3 65 216-283 102-171 (256)
38 TIGR02438 catachol_actin catec 86.8 1 2.2E-05 46.4 5.2 65 216-283 130-199 (281)
39 cd03460 1,2-CTD Catechol 1,2 d 85.0 2.1 4.6E-05 44.2 6.4 65 216-283 122-191 (282)
40 smart00606 CBD_IV Cellulose Bi 85.0 11 0.00024 33.3 10.4 89 406-511 39-129 (129)
41 TIGR02439 catechol_proteo cate 84.7 2 4.3E-05 44.4 6.1 65 216-283 126-195 (285)
42 PF02837 Glyco_hydro_2_N: Glyc 84.3 1.5 3.3E-05 40.5 4.7 69 407-497 71-140 (167)
43 cd03461 1,2-HQD Hydroxyquinol 84.3 1.6 3.5E-05 44.9 5.2 65 216-283 118-187 (277)
44 PRK11114 cellulose synthase re 84.1 1.7 3.6E-05 50.8 5.9 74 409-495 84-162 (756)
45 TIGR02962 hdxy_isourate hydrox 80.6 3.1 6.6E-05 37.2 4.9 48 234-287 14-66 (112)
46 PF13364 BetaGal_dom4_5: Beta- 79.9 4.8 0.0001 35.5 5.9 55 423-494 50-105 (111)
47 KOG2649 Zinc carboxypeptidase 78.8 5.6 0.00012 43.7 7.1 102 179-317 353-455 (500)
48 PF10670 DUF4198: Domain of un 77.4 7.4 0.00016 37.2 7.0 62 218-287 150-211 (215)
49 PF14900 DUF4493: Domain of un 77.2 70 0.0015 31.6 14.0 52 260-315 48-106 (235)
50 PF03170 BcsB: Bacterial cellu 76.4 4.2 9.1E-05 46.0 5.7 78 405-495 323-408 (605)
51 PF00576 Transthyretin: HIUase 76.0 4.3 9.4E-05 36.3 4.5 49 234-287 14-67 (112)
52 PLN03059 beta-galactosidase; P 75.5 3 6.4E-05 49.0 4.1 86 406-498 621-716 (840)
53 cd05469 Transthyretin_like Tra 74.8 5.1 0.00011 35.9 4.6 49 234-287 14-66 (113)
54 cd05821 TLP_Transthyretin Tran 72.2 8.8 0.00019 34.8 5.5 62 218-287 6-72 (121)
55 PF02369 Big_1: Bacterial Ig-l 69.6 23 0.00049 30.5 7.4 64 219-289 25-90 (100)
56 cd03457 intradiol_dioxygenase_ 68.4 14 0.00031 35.8 6.5 63 218-282 26-100 (188)
57 COG2351 Transthyretin-like pro 67.1 18 0.0004 32.7 6.3 66 219-296 9-79 (124)
58 cd05822 TLP_HIUase HIUase (5-h 64.8 11 0.00024 33.6 4.6 48 234-287 14-66 (112)
59 PF09912 DUF2141: Uncharacteri 61.4 18 0.0004 32.0 5.3 48 238-288 12-62 (112)
60 PF01190 Pollen_Ole_e_I: Polle 59.2 18 0.00038 30.9 4.7 37 233-274 18-54 (97)
61 PRK10340 ebgA cryptic beta-D-g 58.8 13 0.00028 45.1 5.0 68 407-496 112-179 (1021)
62 PF01060 DUF290: Transthyretin 58.5 21 0.00045 29.5 4.9 48 222-278 1-48 (80)
63 smart00095 TR_THY Transthyreti 54.6 21 0.00045 32.5 4.5 66 219-296 4-74 (121)
64 PF13754 Big_3_4: Bacterial Ig 53.2 27 0.00058 26.8 4.3 28 260-287 3-32 (54)
65 PF08531 Bac_rhamnosid_N: Alph 51.5 12 0.00026 35.5 2.6 62 422-497 5-66 (172)
66 PF11008 DUF2846: Protein of u 48.5 22 0.00048 31.4 3.7 43 267-310 56-99 (117)
67 PF03944 Endotoxin_C: delta en 47.3 56 0.0012 30.0 6.3 95 409-512 41-140 (143)
68 PRK09525 lacZ beta-D-galactosi 41.7 42 0.00092 40.8 5.8 68 407-496 123-191 (1027)
69 PF07550 DUF1533: Protein of u 40.8 22 0.00048 28.3 2.2 19 476-494 36-55 (65)
70 PRK10150 beta-D-glucuronidase; 40.1 57 0.0012 37.0 6.2 65 409-495 70-135 (604)
71 TIGR03000 plancto_dom_1 Planct 38.4 1.7E+02 0.0036 24.6 7.0 39 270-310 30-73 (75)
72 PF11797 DUF3324: Protein of u 34.2 45 0.00098 30.6 3.5 30 275-304 102-131 (140)
73 PRK13211 N-acetylglucosamine-b 33.5 1.9E+02 0.0041 32.3 8.7 66 210-287 320-387 (478)
74 PF12866 DUF3823: Protein of u 31.9 1.9E+02 0.0042 28.8 7.8 61 218-285 21-83 (222)
75 PF14200 RicinB_lectin_2: Rici 29.9 55 0.0012 27.8 3.2 48 222-279 24-72 (105)
76 smart00634 BID_1 Bacterial Ig- 29.6 2.6E+02 0.0056 23.4 7.2 65 218-290 19-85 (92)
77 PF03785 Peptidase_C25_C: Pept 28.0 1.6E+02 0.0035 25.0 5.4 39 237-287 26-69 (81)
78 PF04571 Lipin_N: lipin, N-ter 26.1 94 0.002 27.8 3.9 38 397-446 34-71 (110)
79 TIGR03769 P_ac_wall_RPT actino 23.7 1.4E+02 0.0031 21.8 3.8 11 277-287 11-21 (41)
80 KOG0496 Beta-galactosidase [Ca 23.0 1.3E+02 0.0028 34.7 5.1 71 404-497 556-626 (649)
81 PF14344 DUF4397: Domain of un 21.8 1.4E+02 0.003 26.0 4.3 36 275-310 39-77 (122)
82 PF08481 GBS_Bsp-like: GBS Bsp 21.1 5.1E+02 0.011 22.1 7.5 36 252-287 34-78 (95)
83 PF10794 DUF2606: Protein of u 21.1 2.9E+02 0.0063 25.3 6.0 55 234-289 54-108 (131)
84 PF11589 DUF3244: Domain of un 20.9 2.9E+02 0.0062 23.9 6.0 52 234-295 45-104 (106)
No 1
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=100.00 E-value=4.2e-46 Score=350.72 Aligned_cols=165 Identities=52% Similarity=0.885 Sum_probs=114.5
Q ss_pred CCeEEEeccCCCccccccCCCCccccccccccCCchhhcccchhcccccCCCCCeeEEeeccCCCCCeeeEEEEEecCCc
Q 010135 322 PTLWEIGIPDRSAREFNVPDPDPKYVNRLFVNHPDRFRQYGLWSRYTELYPNEDLVYTIGVSDYSKDWFFAQVVREMDNK 401 (517)
Q Consensus 322 ~~LweIG~~Drt~~~F~~~d~~~~~~~~~~~~hp~~~R~~glW~~y~~~~P~~dl~ytVG~S~~~~Dw~y~~~~~~~~~~ 401 (517)
++|||||+|||++.||+++|+ +++|||| |++|+++||++|++|+||+| +++||||+|+++ .+
T Consensus 1 ~~iW~IG~~Drta~eF~~~~~-------------~~~r~~~-~~d~~~~~p~~~~~ytVG~S-~~~Dw~y~~~~~--~~- 62 (167)
T PF14683_consen 1 PTIWQIGTPDRTAAEFRNGDP-------------DKYRQYG-WSDYSRDFPWEDLTYTVGSS-PAKDWPYAQWGR--VN- 62 (167)
T ss_dssp SEEEEEE-SSSS-TTSBTHH--------------HHTTS---TT--TTS----S-EEETTTS--GGGSBSEEETT--TS-
T ss_pred CcceEeCCCCCCchhhccCCh-------------hhhhhcC-cccchhhCCCCCCEEEEccC-cccCCcEEEEec--cC-
Confidence 579999999999999998642 5699998 99999999998999999999 889999999974 44
Q ss_pred ccCCccEEEEEEeCCCCCCCcEEEEEEEecc-CCCeEEEEEcCCCCCCCcccccccCCCCceecceee-eeeEEEEEEee
Q 010135 402 TYQGTTWQIKFKLDHVDRNSSYKLRVAIASA-TLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIH-GLYLLYHVNIP 479 (517)
Q Consensus 402 ~~~~~~w~I~F~L~~~~~~~~~tLriala~a-~~~~~~V~vN~~~~~~~~~~~~~~~~~~~i~R~~~~-G~~~~~~~~ip 479 (517)
++|+|+|+|++++..+.+||||+||++ ++++++|+|||+.. +++ ...+++|++++|+++| |+|++++|+||
T Consensus 63 ----~~w~I~F~l~~~~~~~~~tL~i~la~a~~~~~~~V~vNg~~~--~~~-~~~~~~d~~~~r~g~~~G~~~~~~~~ip 135 (167)
T PF14683_consen 63 ----GTWTIKFDLDAVQLAGTYTLRIALAGASAGGRLQVSVNGWSG--PFP-SAPFGNDNAIYRSGIHRGNYRLYEFDIP 135 (167)
T ss_dssp ------EEEEEEE-GGG-S--EEEEEEEEEEETT-EEEEEETTEE--------------S--GGGT---S---EEEEEE-
T ss_pred ----CCEEEEEECCCCccCCcEEEEEEeccccCCCCEEEEEcCccC--Ccc-ccccCCCCceeeCceecccEEEEEEEEc
Confidence 899999999999877899999999999 79999999999544 333 2467899999999998 99999999999
Q ss_pred CCCeeeeecEEEEEeecCCCCCceEEEEEEEE
Q 010135 480 GTRFIEGENTIFLKQPRCTSPFQGIMYDYIRL 511 (517)
Q Consensus 480 a~~L~~G~NtI~l~~~~g~s~~~~vmyD~I~L 511 (517)
+++|++|+|+|+|++++|++.+.|||||||||
T Consensus 136 a~~L~~G~Nti~lt~~~gs~~~~gvmyD~I~L 167 (167)
T PF14683_consen 136 ASLLKAGENTITLTVPSGSGLSPGVMYDYIRL 167 (167)
T ss_dssp TTSS-SEEEEEEEEEE-S-GGSSEEEEEEEEE
T ss_pred HHHEEeccEEEEEEEccCCCccCeEEEEEEEC
Confidence 99999999999999999987788999999998
No 2
>PF09284 RhgB_N: Rhamnogalacturonase B, N-terminal; InterPro: IPR015364 This domain is found in prokaryotic enzyme rhamnogalacturonase B, it adopts a structure consisting of a beta supersandwich, with eighteen strands in two beta-sheets. The exact function of the domain is unknown, but a putative role includes carbohydrate-binding []. ; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=100.00 E-value=7.1e-35 Score=283.20 Aligned_cols=161 Identities=22% Similarity=0.319 Sum_probs=101.6
Q ss_pred CCCCceeEEEEEeeccccCCCCCCCceEEEEecCccCccceeeeccccccCCCCcCCCCCCCccccccceEEeeCCCCCC
Q 010135 2 LRGSSGFYSYAIYEHLKEWPAFTLGQTRFTFKLRKEKFRYMVIADNRHRQMPLPEDLSTGRGQPLAYPEAVQLVNPTDPE 81 (517)
Q Consensus 2 ~~g~~g~Y~y~i~~~~~~~p~~~lge~R~v~Rl~~~~f~~~~~~d~r~~~~P~~~d~~~~~~~~~~~~e~v~~~~~~~~~ 81 (517)
|+|++.|||++ |.+. +++|||+|+|+||++++||+.. |.. +.....|...++.++|+++.
T Consensus 82 r~g~~~IYmaT---~~~~--e~~igelRfIaRL~~~~lpn~~---------~~~-~~~~~~g~taIEgsDVf~~~----- 141 (249)
T PF09284_consen 82 RPGENNIYMAT---YITA--EPSIGELRFIARLNRSILPNEY---------PYG-DVSTTDGGTAIEGSDVFLVS----- 141 (249)
T ss_dssp ETT--EEEEEE---EESS----TTS-EEEEEEE-TTTS-EEE---------TTG-GGG--TT-EEEETTTEEEE------
T ss_pred ecCCceEEEEe---ccCC--CCCccceEEEEEcccccCCCCC---------Ccc-cccccCCceEEeeccEEEec-----
Confidence 78999999997 6554 7899999999999999999932 111 11113566778899999983
Q ss_pred CCCeeeeeeeecccccCCcEEEEEeCCCCeEEEEEcCCCccccCCCceeccccccCCc---EEEEEeecccccccceeec
Q 010135 82 HQGEVDDKYQYSCENKDLKVHGWICRTTPVGFWLIIPSDEFRSGGPLKQNLTSHVGPT---TLAVFLSGHYAGKYMETHI 158 (517)
Q Consensus 82 ~~G~~~sKY~~s~~~~d~~vhG~~s~g~~vG~W~I~~s~E~~sGGP~kqdL~~h~g~~---~l~y~~s~H~~g~~~~~~~ 158 (517)
+|+++||||++.++||+++|||+ ++++|+|||++++|.+|||||+|||++|.++. ||+||+|+|. +||++
T Consensus 142 -~G~TrSKfYSs~r~IDd~~hgv~--g~~vgv~mi~~~~E~SSGGPFfRDI~~~~~~~~~~Ly~ymnSgH~----qTE~~ 214 (249)
T PF09284_consen 142 -DGQTRSKFYSSQRFIDDDVHGVS--GSAVGVYMIMSNYEKSSGGPFFRDINTNNGGDGNELYNYMNSGHT----QTEPY 214 (249)
T ss_dssp -TTEEEEGGGG--BGGG-SEEEEE---SS-EEEEE----TT-SS-TT-B---EEE-SS-EEEEEEEE-STT------S--
T ss_pred -CceEeeeeccccceeccceEEEe--cCCeEEEEEeCCccccCCCCchhhhhhccCCccceeeeeEecCcc----cCchh
Confidence 49999999999999999999998 88999999999999999999999999998763 9999999998 57888
Q ss_pred CCCCCCceeeceEEEEEcCCCCCCCchhhHHHHHHHHhhhccCCCCCCCCCC
Q 010135 159 GQDEPWKKVFGPVFIYLNSAADGDDPLWLWEDAKIKMMSEVQSWPYNFPASE 210 (517)
Q Consensus 159 ~~Ge~w~k~~GP~~~y~n~g~~~~~~~~l~~Da~~~~~~E~~~wpy~f~~s~ 210 (517)
|.| |||||+|+|++|++|+. .+.+++||++-
T Consensus 215 R~G-----LhGPYaL~FT~g~~Ps~----------------~~~D~sff~~L 245 (249)
T PF09284_consen 215 RMG-----LHGPYALAFTDGGAPSA----------------SDLDTSFFDDL 245 (249)
T ss_dssp --E-----EEEEEEEEEESS----S---------------------GGGGGT
T ss_pred ccc-----cCCceEEEEcCCCCCCC----------------ccccccchhhc
Confidence 998 99999999999999853 13478998863
No 3
>PF06045 Rhamnogal_lyase: Rhamnogalacturonate lyase family; InterPro: IPR010325 Rhamnogalacturonate lyase degrades the rhamnogalacturonan I (RG-I) backbone of pectin []. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi.
Probab=99.92 E-value=1.1e-25 Score=215.99 Aligned_cols=86 Identities=69% Similarity=1.198 Sum_probs=84.7
Q ss_pred CCCCCceeEEEEEeeccccCCCCCCCceEEEEecCccCccceeeeccccccCCCCcCCCCCCCccccccceEEeeCCCCC
Q 010135 1 MLRGSSGFYSYAIYEHLKEWPAFTLGQTRFTFKLRKEKFRYMVIADNRHRQMPLPEDLSTGRGQPLAYPEAVQLVNPTDP 80 (517)
Q Consensus 1 ~~~g~~g~Y~y~i~~~~~~~p~~~lge~R~v~Rl~~~~f~~~~~~d~r~~~~P~~~d~~~~~~~~~~~~e~v~~~~~~~~ 80 (517)
|++|+||||+||||+|+++||+++|+|+|+||||++++|++|+++|+||+.||+|+|+++++|++|+|||+|+|++|+||
T Consensus 118 m~rG~SGfY~YAI~e~~~~~Pa~~l~q~R~vfKl~~d~F~ymai~d~rqr~mP~~~D~~~~~~~~l~y~eav~l~~p~~~ 197 (203)
T PF06045_consen 118 MLRGSSGFYSYAIFEHPAGWPAFDLGQTRIVFKLNKDKFHYMAISDDRQRIMPSPDDRDPARGQPLAYPEAVLLVNPINP 197 (203)
T ss_pred EecCCceEEEEEEEecCCCCCCcccceeEEEEECCccccceEEecccccccCCChHHccccCCCcccCchhhhcCCCCCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCee
Q 010135 81 EHQGEV 86 (517)
Q Consensus 81 ~~~G~~ 86 (517)
+++|||
T Consensus 198 ~~~gev 203 (203)
T PF06045_consen 198 QFRGEV 203 (203)
T ss_pred cccccC
Confidence 999986
No 4
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=99.87 E-value=1.4e-22 Score=174.30 Aligned_cols=93 Identities=47% Similarity=0.894 Sum_probs=54.5
Q ss_pred CCeEEEEEEEEecCCCcccc-CceEEEecCCCCCCCccccccccceEEEeCCCcceEeCcccCcceEEEEEECceeeeee
Q 010135 217 ERGCVSGRLLVQDSNDVISA-NGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYR 295 (517)
Q Consensus 217 ~RG~VsG~v~~~d~~~~~pa-~~a~V~L~~~~~~g~~~~~~~~yqywt~td~~G~Fti~nVrpGtY~L~a~~~G~~G~~~ 295 (517)
+||+|+|+|++.|+....++ ..++|+|++++|.+ |+++||||++||++|+|+|+|||||+|+|+||.+|+.||+.
T Consensus 1 ~RG~VsG~l~l~dg~~~~~~~~~~~Vgl~~~~d~~----q~~~yqYwt~td~~G~Fti~~V~pGtY~L~ay~~g~~g~~~ 76 (95)
T PF14686_consen 1 QRGSVSGRLTLSDGVTNPPAGANAVVGLAPPGDFQ----QNKGYQYWTRTDSDGNFTIPNVRPGTYRLYAYADGIFGDYK 76 (95)
T ss_dssp G-BEEEEEEE---SS--TT--S-EEEEEE------------SS-EEEEE--TTSEEE---B-SEEEEEEEEE----TTEE
T ss_pred CCCEEEEEEEEccCcccCccceeEEEEeeeccccc----cCCCCcEEEEeCCCCcEEeCCeeCcEeEEEEEEecccCceE
Confidence 59999999999887443444 68999999998764 49999999999999999999999999999999999999998
Q ss_pred e-eeEEEEeCCceeeecce
Q 010135 296 S-DALVTITSGSNIKMGDL 313 (517)
Q Consensus 296 ~-~~~VtV~aG~t~~l~~l 313 (517)
. +.+|+|++|++++|++|
T Consensus 77 ~~~~~ItV~~g~~~~lg~~ 95 (95)
T PF14686_consen 77 VASDSITVSGGTTTDLGDL 95 (95)
T ss_dssp EEEEEEEE-T-EEE-----
T ss_pred EecceEEEcCCcEeccccC
Confidence 6 77899999999988754
No 5
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=98.88 E-value=9.4e-09 Score=84.62 Aligned_cols=80 Identities=29% Similarity=0.436 Sum_probs=59.3
Q ss_pred EEEEEEEEecCCCccccCceEEEecCCCCCCCccccccccceEEEeCCCcceEeCcccCcceEEEEEECceeeeeeee-e
Q 010135 220 CVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSD-A 298 (517)
Q Consensus 220 ~VsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~~~~~~~yqywt~td~~G~Fti~nVrpGtY~L~a~~~G~~G~~~~~-~ 298 (517)
+|+|+|...++ .|..+|.|.|... ..+..+-+.||++|+|.|++++||+|+|.+...|+. ... .
T Consensus 1 tI~G~V~d~~g---~pv~~a~V~l~~~---------~~~~~~~~~Td~~G~f~~~~l~~g~Y~l~v~~~g~~---~~~~~ 65 (82)
T PF13620_consen 1 TISGTVTDATG---QPVPGATVTLTDQ---------DGGTVYTTTTDSDGRFSFEGLPPGTYTLRVSAPGYQ---PQTQE 65 (82)
T ss_dssp -EEEEEEETTS---CBHTT-EEEET-----------TTTECCEEE--TTSEEEEEEE-SEEEEEEEEBTTEE----EEEE
T ss_pred CEEEEEEcCCC---CCcCCEEEEEEEe---------eCCCEEEEEECCCceEEEEccCCEeEEEEEEECCcc---eEEEE
Confidence 68999998776 8999999999753 234578899999999999999999999999998865 333 2
Q ss_pred EEEEeCCceeeecceEE
Q 010135 299 LVTITSGSNIKMGDLVY 315 (517)
Q Consensus 299 ~VtV~aG~t~~l~~l~~ 315 (517)
.|+|.+|++..+ +|++
T Consensus 66 ~v~v~~~~~~~~-~i~L 81 (82)
T PF13620_consen 66 NVTVTAGQTTTV-DITL 81 (82)
T ss_dssp EEEESSSSEEE---EEE
T ss_pred EEEEeCCCEEEE-EEEE
Confidence 599999999887 5765
No 6
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=98.54 E-value=7.2e-07 Score=74.63 Aligned_cols=88 Identities=28% Similarity=0.408 Sum_probs=67.2
Q ss_pred EEEEEEEEecCCCccccCceEEEecCCCCCCCccccccccceEEEeCCCcceEeCcccCcceEEEEEECceeeeeeeeeE
Q 010135 220 CVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDAL 299 (517)
Q Consensus 220 ~VsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~~~~~~~yqywt~td~~G~Fti~nVrpGtY~L~a~~~G~~G~~~~~~~ 299 (517)
+|+|+|...+ +..|..+|.|.+.+. ...+.||++|.|+|+ +++|+|+|.+...|+. ..+..
T Consensus 1 ti~G~V~d~~--t~~pl~~a~V~~~~~-------------~~~~~Td~~G~F~i~-~~~g~~~l~is~~Gy~---~~~~~ 61 (88)
T PF13715_consen 1 TISGKVVDSD--TGEPLPGATVYLKNT-------------KKGTVTDENGRFSIK-LPEGDYTLKISYIGYE---TKTIT 61 (88)
T ss_pred CEEEEEEECC--CCCCccCeEEEEeCC-------------cceEEECCCeEEEEE-EcCCCeEEEEEEeCEE---EEEEE
Confidence 5899999766 248999999999543 367889999999999 9999999999997754 55556
Q ss_pred EEEeCCceeeecceEEcCCCCCCCeEEEec
Q 010135 300 VTITSGSNIKMGDLVYEPPRDGPTLWEIGI 329 (517)
Q Consensus 300 VtV~aG~t~~l~~l~~~~~~~~~~LweIG~ 329 (517)
|.+..++...+ ++.+.+. ...|-||.+
T Consensus 62 i~~~~~~~~~~-~i~L~~~--~~~L~eVvV 88 (88)
T PF13715_consen 62 ISVNSNKNTNL-NIYLEPK--SNQLDEVVV 88 (88)
T ss_pred EEecCCCEEEE-EEEEeeC--cccCCeEEC
Confidence 77766655555 5766543 567877753
No 7
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=98.08 E-value=1.3e-05 Score=85.15 Aligned_cols=78 Identities=19% Similarity=0.212 Sum_probs=63.0
Q ss_pred CeEEEEEEEEecCCCccccCceEEEecCCCCCCCccccccccceEEEeCCCcceEeCcccCcceEEEEEECceeeeeeee
Q 010135 218 RGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSD 297 (517)
Q Consensus 218 RG~VsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~~~~~~~yqywt~td~~G~Fti~nVrpGtY~L~a~~~G~~G~~~~~ 297 (517)
...|+|+|+... ...|..+|+|.+.+ ....+.||.+|.|.+ .|+||+|+|+|...|+. ..+
T Consensus 296 ~~gI~G~V~D~~--~g~pl~~AtV~V~g-------------~~~~~~Td~~G~f~~-~l~pG~ytl~vs~~GY~---~~~ 356 (375)
T cd03863 296 HRGVRGFVLDAT--DGRGILNATISVAD-------------INHPVTTYKDGDYWR-LLVPGTYKVTASARGYD---PVT 356 (375)
T ss_pred cCeEEEEEEeCC--CCCCCCCeEEEEec-------------CcCceEECCCccEEE-ccCCeeEEEEEEEcCcc---cEE
Confidence 478999998753 23788899999853 345688999999999 69999999999998865 455
Q ss_pred eEEEEeCCceeeecceEE
Q 010135 298 ALVTITSGSNIKMGDLVY 315 (517)
Q Consensus 298 ~~VtV~aG~t~~l~~l~~ 315 (517)
.+|+|.+|+++.+ ++.+
T Consensus 357 ~~v~V~~~~~~~~-~~~L 373 (375)
T cd03863 357 KTVEVDSKGAVQV-NFTL 373 (375)
T ss_pred EEEEEcCCCcEEE-EEEe
Confidence 5799999999887 4766
No 8
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=98.07 E-value=7.8e-06 Score=87.40 Aligned_cols=98 Identities=21% Similarity=0.341 Sum_probs=74.3
Q ss_pred CCchhhHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCeEEEEEEEEecCCCccccCceEEEecCCCCCCCccccccccce
Q 010135 182 DDPLWLWEDAKIKMMSEVQSWPYNFPASEDFQKSEERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQF 261 (517)
Q Consensus 182 ~~~~~l~~Da~~~~~~E~~~wpy~f~~s~~y~~~~~RG~VsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~~~~~~~yqy 261 (517)
+....+|+|-|.-+. .|.....|| |+|+|+...+ .|..+|.|.+.+. ..
T Consensus 304 ~~L~~~W~~n~~all--------------~~~~q~~~g-I~G~V~D~~g---~pI~~AtV~V~g~-------------~~ 352 (402)
T cd03865 304 ETLKQYWEDNKNSLV--------------NYIEQVHRG-VKGFVKDLQG---NPIANATISVEGI-------------DH 352 (402)
T ss_pred HHHHHHHHHHHHHHH--------------HHHHHhccc-eEEEEECCCC---CcCCCeEEEEEcC-------------cc
Confidence 345778888876553 222233577 9999987655 7888999998543 34
Q ss_pred EEEeCCCcceEeCcccCcceEEEEEECceeeeeeeeeEEEEeCCceeeecceEE
Q 010135 262 WTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDALVTITSGSNIKMGDLVY 315 (517)
Q Consensus 262 wt~td~~G~Fti~nVrpGtY~L~a~~~G~~G~~~~~~~VtV~aG~t~~l~~l~~ 315 (517)
.+.||.+|.|.+ +++||+|+|+|.+.|+. .....|+|.+++++.+ ++++
T Consensus 353 ~~~T~~~G~Y~~-~L~pG~Ytv~vsa~Gy~---~~~~~V~V~~~~~~~v-df~L 401 (402)
T cd03865 353 DITSAKDGDYWR-LLAPGNYKLTASAPGYL---AVVKKVAVPYSPAVRV-DFEL 401 (402)
T ss_pred ccEECCCeeEEE-CCCCEEEEEEEEecCcc---cEEEEEEEcCCCcEEE-eEEe
Confidence 568999999998 89999999999998876 4456799999998877 4665
No 9
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=98.05 E-value=1.4e-05 Score=85.38 Aligned_cols=76 Identities=16% Similarity=0.251 Sum_probs=62.7
Q ss_pred eEEEEEEEEecCCCccccCceEEEecCCCCCCCccccccccceEEEeCCCcceEeCcccCcceEEEEEECceeeeeeeee
Q 010135 219 GCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDA 298 (517)
Q Consensus 219 G~VsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~~~~~~~yqywt~td~~G~Fti~nVrpGtY~L~a~~~G~~G~~~~~~ 298 (517)
..|+|+|+..++ .|..+|+|.+.+ ....+.||.+|.| +.+++||+|+|.|+..|+. .++.
T Consensus 316 ~gI~G~V~D~~g---~pi~~A~V~v~g-------------~~~~~~T~~~G~y-~r~l~pG~Y~l~vs~~Gy~---~~t~ 375 (392)
T cd03864 316 QGIKGMVTDENN---NGIANAVISVSG-------------ISHDVTSGTLGDY-FRLLLPGTYTVTASAPGYQ---PSTV 375 (392)
T ss_pred CeEEEEEECCCC---CccCCeEEEEEC-------------CccceEECCCCcE-EecCCCeeEEEEEEEcCce---eEEE
Confidence 489999998766 789999999954 3456889999999 9999999999999998865 5566
Q ss_pred EEEEeCCceeeecceEE
Q 010135 299 LVTITSGSNIKMGDLVY 315 (517)
Q Consensus 299 ~VtV~aG~t~~l~~l~~ 315 (517)
+|+|.+++++.+ ++++
T Consensus 376 ~v~V~~~~~~~~-df~L 391 (392)
T cd03864 376 TVTVGPAEATLV-NFQL 391 (392)
T ss_pred EEEEcCCCcEEE-eeEe
Confidence 799999987766 4654
No 10
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=97.87 E-value=5.7e-05 Score=80.03 Aligned_cols=75 Identities=17% Similarity=0.267 Sum_probs=61.9
Q ss_pred eEEEEEEEEecCCCccccCceEEEecCCCCCCCccccccccceEEEeCCCcceEeCcccCcceEEEEEECceeeeeeeee
Q 010135 219 GCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDA 298 (517)
Q Consensus 219 G~VsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~~~~~~~yqywt~td~~G~Fti~nVrpGtY~L~a~~~G~~G~~~~~~ 298 (517)
-.|+|+|+..+| .|..+|+|.+.+. . .+.||.+|.|.+. ++||+|+|.+...|+. ..+.
T Consensus 287 ~gI~G~V~d~~g---~pi~~A~V~v~g~-------------~-~~~T~~~G~y~~~-L~pG~y~v~vs~~Gy~---~~~~ 345 (363)
T cd06245 287 KGVHGVVTDKAG---KPISGATIVLNGG-------------H-RVYTKEGGYFHVL-LAPGQHNINVIAEGYQ---QEHL 345 (363)
T ss_pred cEEEEEEEcCCC---CCccceEEEEeCC-------------C-ceEeCCCcEEEEe-cCCceEEEEEEEeCce---eEEE
Confidence 569999997655 8899999999532 2 5779999999997 9999999999998765 5566
Q ss_pred EEEEeCCceeeecceEE
Q 010135 299 LVTITSGSNIKMGDLVY 315 (517)
Q Consensus 299 ~VtV~aG~t~~l~~l~~ 315 (517)
+|+|.+++++.+ ++++
T Consensus 346 ~V~v~~~~~~~~-~f~L 361 (363)
T cd06245 346 PVVVSHDEASSV-KIVL 361 (363)
T ss_pred EEEEcCCCeEEE-EEEe
Confidence 799999988777 5766
No 11
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=97.73 E-value=8.8e-05 Score=78.76 Aligned_cols=77 Identities=17% Similarity=0.171 Sum_probs=60.2
Q ss_pred CeEEEEEEEEecCCCccccCceEEEecCCCCCCCccccccccceEEEeCCCcceEeCcccCcceEEEEEECceeeeeeee
Q 010135 218 RGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSD 297 (517)
Q Consensus 218 RG~VsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~~~~~~~yqywt~td~~G~Fti~nVrpGtY~L~a~~~G~~G~~~~~ 297 (517)
.+.|+|+|+..++ .|..+|.|.|.+. ...+.||++|.|.+ +++||+|+|.+...|+.- ...
T Consensus 295 ~~~i~G~V~d~~g---~pv~~A~V~v~~~-------------~~~~~td~~G~y~~-~l~~G~Y~l~vs~~Gf~~--~~~ 355 (372)
T cd03868 295 HIGVKGFVRDASG---NPIEDATIMVAGI-------------DHNVTTAKFGDYWR-LLLPGTYTITAVAPGYEP--STV 355 (372)
T ss_pred CCceEEEEEcCCC---CcCCCcEEEEEec-------------ccceEeCCCceEEe-cCCCEEEEEEEEecCCCc--eEE
Confidence 4789999998765 7889999999543 35689999999984 799999999999988651 122
Q ss_pred eEEEEeCCceeeecceE
Q 010135 298 ALVTITSGSNIKMGDLV 314 (517)
Q Consensus 298 ~~VtV~aG~t~~l~~l~ 314 (517)
..|+|.+|+++.+ +++
T Consensus 356 ~~v~v~~g~~~~~-~~~ 371 (372)
T cd03868 356 TDVVVKEGEATSV-NFT 371 (372)
T ss_pred eeEEEcCCCeEEE-eeE
Confidence 3477999998877 353
No 12
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=97.71 E-value=0.00013 Score=77.37 Aligned_cols=72 Identities=19% Similarity=0.268 Sum_probs=58.8
Q ss_pred eEEEEEEEEecCCCccccCceEEEecCCCCCCCccccccccceEEEeCCCcceEeCcccCcceEEEEEECceeeeeeeee
Q 010135 219 GCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDA 298 (517)
Q Consensus 219 G~VsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~~~~~~~yqywt~td~~G~Fti~nVrpGtY~L~a~~~G~~G~~~~~~ 298 (517)
.+|+|+|+..++ .|..+|.|.+. +....+.||.+|.|.+. ++||+|+|.+...|+. .++.
T Consensus 298 ~~i~G~V~d~~g---~pl~~A~V~i~-------------~~~~~~~Td~~G~f~~~-l~~G~y~l~vs~~Gy~---~~~~ 357 (374)
T cd03858 298 RGIKGFVRDANG---NPIANATISVE-------------GINHDVTTAEDGDYWRL-LLPGTYNVTASAPGYE---PQTK 357 (374)
T ss_pred CceEEEEECCCC---CccCCeEEEEe-------------cceeeeEECCCceEEEe-cCCEeEEEEEEEcCcc---eEEE
Confidence 489999997655 78889999994 44678999999999986 7999999999998764 4555
Q ss_pred EEEEeC-Cceeee
Q 010135 299 LVTITS-GSNIKM 310 (517)
Q Consensus 299 ~VtV~a-G~t~~l 310 (517)
+|.|.+ |+++.+
T Consensus 358 ~v~v~~~g~~~~~ 370 (374)
T cd03858 358 SVVVPNDNSAVVV 370 (374)
T ss_pred EEEEecCCceEEE
Confidence 678877 887766
No 13
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=97.44 E-value=0.00044 Score=74.11 Aligned_cols=72 Identities=19% Similarity=0.232 Sum_probs=56.7
Q ss_pred eEEEEEEEEecCCCccccCceEEEecCCCCCCCccccccccceEEEeCCCcceEeCcccCcceEEEEEECceeeeeeeee
Q 010135 219 GCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDA 298 (517)
Q Consensus 219 G~VsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~~~~~~~yqywt~td~~G~Fti~nVrpGtY~L~a~~~G~~G~~~~~~ 298 (517)
-.|+|+|+..++ .|..+|+|.|.+ ....+.||++|.|. .+++||+|+|.+...|+. ..+.
T Consensus 318 ~~i~G~V~D~~g---~pi~~A~V~v~g-------------~~~~~~Td~~G~y~-~~l~~G~y~l~vs~~Gy~---~~~~ 377 (395)
T cd03867 318 RGIKGFVKDKDG---NPIKGARISVRG-------------IRHDITTAEDGDYW-RLLPPGIHIVSAQAPGYT---KVMK 377 (395)
T ss_pred ceeEEEEEcCCC---CccCCeEEEEec-------------cccceEECCCceEE-EecCCCcEEEEEEecCee---eEEE
Confidence 369999998765 889999999953 36678999999997 689999999999998765 4556
Q ss_pred EEEEeC--Cceeee
Q 010135 299 LVTITS--GSNIKM 310 (517)
Q Consensus 299 ~VtV~a--G~t~~l 310 (517)
+|+|.+ ++...+
T Consensus 378 ~v~v~~~~~~~~~~ 391 (395)
T cd03867 378 RVTLPARMKRAGRV 391 (395)
T ss_pred EEEeCCcCCCceEe
Confidence 688865 444444
No 14
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=96.67 E-value=0.0059 Score=65.16 Aligned_cols=70 Identities=17% Similarity=0.176 Sum_probs=52.8
Q ss_pred CeEEEEEEEEecCCCccccCceEEEecCCCCCCCccccccccceEEEeCCCcceEeCcccCcceEEEEEECceeeeeeee
Q 010135 218 RGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSD 297 (517)
Q Consensus 218 RG~VsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~~~~~~~yqywt~td~~G~Fti~nVrpGtY~L~a~~~G~~G~~~~~ 297 (517)
.+.|+|+|+..+| .|..+|.|.+.+. +...-+.||++|.|.+. ++||+|+|.+.+.|+. ...
T Consensus 294 ~~gI~G~V~D~~g---~pi~~A~V~v~g~-----------~~~~~~~T~~~G~y~~~-l~pG~Y~v~vsa~Gy~---~~~ 355 (376)
T cd03866 294 HLGVKGQVFDSNG---NPIPNAIVEVKGR-----------KHICPYRTNVNGEYFLL-LLPGKYMINVTAPGFK---TVI 355 (376)
T ss_pred cCceEEEEECCCC---CccCCeEEEEEcC-----------CceeEEEECCCceEEEe-cCCeeEEEEEEeCCcc---eEE
Confidence 4679999986555 7888999998643 11233469999999775 9999999999998875 445
Q ss_pred eEEEEeCC
Q 010135 298 ALVTITSG 305 (517)
Q Consensus 298 ~~VtV~aG 305 (517)
.+|.|.+.
T Consensus 356 ~~v~v~~~ 363 (376)
T cd03866 356 TNVIIPYN 363 (376)
T ss_pred EEEEeCCC
Confidence 56777754
No 15
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=95.75 E-value=0.054 Score=49.74 Aligned_cols=78 Identities=19% Similarity=0.127 Sum_probs=55.2
Q ss_pred EEEEEEEEecCCCccccCceEEEecCCCCCCCccccccccceEEEeCCCcceEeCcccCcceEEEEEECceeeeeeeeeE
Q 010135 220 CVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDAL 299 (517)
Q Consensus 220 ~VsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~~~~~~~yqywt~td~~G~Fti~nVrpGtY~L~a~~~G~~G~~~~~~~ 299 (517)
.|||.++.-.| +|..+..+.|..-... ..==.+.-=+..|++.|.|+|+ +.||.|.+++...|.. ..+-..
T Consensus 4 ~ISGvL~dg~G---~pv~g~~I~L~A~~tS---~~Vv~~t~as~~t~~~G~Ys~~-~epG~Y~V~l~~~g~~--~~~vG~ 74 (134)
T PF08400_consen 4 KISGVLKDGAG---KPVPGCTITLKARRTS---STVVVGTVASVVTGEAGEYSFD-VEPGVYRVTLKVEGRP--PVYVGD 74 (134)
T ss_pred EEEEEEeCCCC---CcCCCCEEEEEEccCc---hheEEEEEEEEEcCCCceEEEE-ecCCeEEEEEEECCCC--ceeEEE
Confidence 68999987666 8999999998742111 0001244556788999999996 9999999999998854 223245
Q ss_pred EEEeCCc
Q 010135 300 VTITSGS 306 (517)
Q Consensus 300 VtV~aG~ 306 (517)
|+|.+.+
T Consensus 75 I~V~~dS 81 (134)
T PF08400_consen 75 ITVYEDS 81 (134)
T ss_pred EEEecCC
Confidence 7777544
No 16
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=95.35 E-value=0.093 Score=42.15 Aligned_cols=45 Identities=20% Similarity=0.411 Sum_probs=36.3
Q ss_pred cceEeCcccCcceEEEEEECceeeeeeeeeEEEEeCCceeeecceEEcC
Q 010135 269 GCFSIKNIRTGNYNLYAWVPGFVGDYRSDALVTITSGSNIKMGDLVYEP 317 (517)
Q Consensus 269 G~Fti~nVrpGtY~L~a~~~G~~G~~~~~~~VtV~aG~t~~l~~l~~~~ 317 (517)
.-.++..+++|.|+|.+..+|+. ..+..|.|.+|++..+ ++.+++
T Consensus 25 tp~~~~~l~~G~~~v~v~~~Gy~---~~~~~v~v~~~~~~~v-~~~L~~ 69 (71)
T PF08308_consen 25 TPLTLKDLPPGEHTVTVEKPGYE---PYTKTVTVKPGETTTV-NVTLEP 69 (71)
T ss_pred CcceeeecCCccEEEEEEECCCe---eEEEEEEECCCCEEEE-EEEEEE
Confidence 34578889999999999998865 5566799999999888 477643
No 17
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=95.17 E-value=0.045 Score=50.50 Aligned_cols=65 Identities=22% Similarity=0.275 Sum_probs=47.6
Q ss_pred CCeEEEEEEEEecCCCccccCceEEEecCCCCCCCccccccccceEEEeCCCcceEe---Cc-ccCcceEEEEEECc
Q 010135 217 ERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSI---KN-IRTGNYNLYAWVPG 289 (517)
Q Consensus 217 ~RG~VsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~~~~~~~yqywt~td~~G~Fti---~n-VrpGtY~L~a~~~G 289 (517)
+.+.|+++|+... ..+||.++.|-|....+ +.|.. -.-+.||++|+|.. .+ +.||.|+|.....+
T Consensus 25 ~~~~Is~HVLDt~--~G~PA~gV~V~L~~~~~-~~w~~-----l~~~~Td~dGR~~~l~~~~~~~~G~Y~L~F~t~~ 93 (137)
T PRK15036 25 QQNILSVHILNQQ--TGKPAADVTVTLEKKAD-NGWLQ-----LNTAKTDKDGRIKALWPEQTATTGDYRVVFKTGD 93 (137)
T ss_pred cCCCeEEEEEeCC--CCcCCCCCEEEEEEccC-CceEE-----EEEEEECCCCCCccccCcccCCCeeEEEEEEcch
Confidence 4467999988654 23999999999975432 22331 35578999999986 34 88999999998644
No 18
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=94.98 E-value=0.21 Score=44.04 Aligned_cols=81 Identities=17% Similarity=0.331 Sum_probs=50.8
Q ss_pred CCCcEEEEEEEeccCC-CeEEEEEcCCCCCCCcccccccCCCCceecceeeeeeEEEEEEeeCCCeeeeecEEEEEeecC
Q 010135 419 RNSSYKLRVAIASATL-AELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLKQPRC 497 (517)
Q Consensus 419 ~~~~~tLriala~a~~-~~~~V~vN~~~~~~~~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~NtI~l~~~~g 497 (517)
..+.|+|++..|.... ++++|+||+... ++..+..++.... --.|...+..| .|.+|.|+|+|....+
T Consensus 43 ~~g~y~~~~~~a~~~~~~~~~l~id~~~g--~~~~~~~~~~tg~------w~~~~~~~~~v---~l~~G~h~i~l~~~~~ 111 (125)
T PF03422_consen 43 EAGTYTLTIRYANGGGGGTIELRIDGPDG--TLIGTVSLPPTGG------WDTWQTVSVSV---KLPAGKHTIYLVFNGG 111 (125)
T ss_dssp SSEEEEEEEEEEESSSSEEEEEEETTTTS--EEEEEEEEE-ESS------TTEEEEEEEEE---EEESEEEEEEEEESSS
T ss_pred CCceEEEEEEEECCCCCcEEEEEECCCCC--cEEEEEEEcCCCC------ccccEEEEEEE---eeCCCeeEEEEEEECC
Confidence 3678899988888664 799999999322 1222222221110 01234445555 4667999999998776
Q ss_pred CCCCceEEEEEEEEe
Q 010135 498 TSPFQGIMYDYIRLE 512 (517)
Q Consensus 498 ~s~~~~vmyD~I~Le 512 (517)
.+ ..+-.|+|+|+
T Consensus 112 ~~--~~~niD~~~f~ 124 (125)
T PF03422_consen 112 DG--WAFNIDYFQFT 124 (125)
T ss_dssp SS--B-EEEEEEEEE
T ss_pred CC--ceEEeEEEEEE
Confidence 43 35889999886
No 19
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
Probab=94.43 E-value=0.095 Score=56.54 Aligned_cols=68 Identities=16% Similarity=0.241 Sum_probs=49.5
Q ss_pred CCeEEEEEEEEecCCCccccCceEEEecCCCCCCCccccccccceEEEeCCCcceEeCcccCcceEEEEEECceeeeeee
Q 010135 217 ERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRS 296 (517)
Q Consensus 217 ~RG~VsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~~~~~~~yqywt~td~~G~Fti~nVrpGtY~L~a~~~G~~G~~~~ 296 (517)
.|| |+|.|+...| .|..+|+|.+.. ......|.++|.|-- =+.||+|+++|.++|+. ..
T Consensus 328 h~G-ikG~V~d~~g---~~i~~a~i~v~g-------------~~~~v~t~~~GdywR-ll~pG~y~v~~~a~gy~---~~ 386 (405)
T cd03869 328 HRG-IKGVVRDKTG---KGIPNAIISVEG-------------INHDIRTASDGDYWR-LLNPGEYRVTAHAEGYT---SS 386 (405)
T ss_pred hcC-ceEEEECCCC---CcCCCcEEEEec-------------CccceeeCCCCceEE-ecCCceEEEEEEecCCC---cc
Confidence 354 8999987655 788889998853 234556778886543 28999999999998864 45
Q ss_pred eeEEEEeCC
Q 010135 297 DALVTITSG 305 (517)
Q Consensus 297 ~~~VtV~aG 305 (517)
..+|+|..+
T Consensus 387 ~~~~~v~~~ 395 (405)
T cd03869 387 TKNCEVGYE 395 (405)
T ss_pred cEEEEEcCC
Confidence 556777754
No 20
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=94.27 E-value=0.11 Score=48.31 Aligned_cols=64 Identities=20% Similarity=0.305 Sum_probs=47.2
Q ss_pred CCeEEEEEEEEecCCCccccCceEEEecCCCCCCCcccccc-------ccceEEEeCCCcceEeCcccCcceEE
Q 010135 217 ERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECK-------DYQFWTTADEDGCFSIKNIRTGNYNL 283 (517)
Q Consensus 217 ~RG~VsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~~~~~~-------~yqywt~td~~G~Fti~nVrpGtY~L 283 (517)
..-.|.|+|+..++ .|..+|.|-+......|....+.. ...-...||++|.|.|.-|+||.|.+
T Consensus 10 ~~l~l~G~V~D~~g---~pv~~A~VeiW~~d~~G~Y~~~~~~~~~~~~~~rg~~~Td~~G~y~f~ti~Pg~Y~~ 80 (146)
T cd00421 10 EPLTLTGTVLDGDG---CPVPDALVEIWQADADGRYSGQDDSGLDPEFFLRGRQITDADGRYRFRTIKPGPYPI 80 (146)
T ss_pred CEEEEEEEEECCCC---CCCCCcEEEEEecCCCCccCCcCccccCCCCCCEEEEEECCCcCEEEEEEcCCCCCC
Confidence 45699999998777 777889998876655554433211 22234779999999999999999994
No 21
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=94.02 E-value=0.23 Score=39.43 Aligned_cols=45 Identities=31% Similarity=0.494 Sum_probs=31.6
Q ss_pred EEeCCCcceEeCcccCcceEEEEEE--CceeeeeeeeeEEEEeCCcee
Q 010135 263 TTADEDGCFSIKNIRTGNYNLYAWV--PGFVGDYRSDALVTITSGSNI 308 (517)
Q Consensus 263 t~td~~G~Fti~nVrpGtY~L~a~~--~G~~G~~~~~~~VtV~aG~t~ 308 (517)
..||++|.|.|++++||+|.|.--. .|+.-. .....++|..++..
T Consensus 21 ~~Td~~G~~~f~~L~~G~Y~l~E~~aP~GY~~~-~~~~~~~i~~~~~~ 67 (70)
T PF05738_consen 21 VTTDENGKYTFKNLPPGTYTLKETKAPDGYQLD-DTPYEFTITEDGDV 67 (70)
T ss_dssp EEGGTTSEEEEEEEESEEEEEEEEETTTTEEEE-ECEEEEEECTTSCE
T ss_pred EEECCCCEEEEeecCCeEEEEEEEECCCCCEEC-CCceEEEEecCCEE
Confidence 5689999999999999999999876 443210 11223666665543
No 22
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.02 E-value=0.15 Score=58.67 Aligned_cols=55 Identities=24% Similarity=0.321 Sum_probs=44.3
Q ss_pred eEEEEEEEEecCCCccccCceEEEecCCCCCCCccccccccceEEEeCCCcceEeCc-ccCcceEEEEEECc
Q 010135 219 GCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKN-IRTGNYNLYAWVPG 289 (517)
Q Consensus 219 G~VsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~~~~~~~yqywt~td~~G~Fti~n-VrpGtY~L~a~~~G 289 (517)
-+|+|||.+.. ...|..++.|-+.+ +-..+||++|+|+++| +..|+|++.|-+..
T Consensus 316 fSvtGRVl~g~--~g~~l~gvvvlvng--------------k~~~kTdaqGyykLen~~t~gtytI~a~keh 371 (1165)
T KOG1948|consen 316 FSVTGRVLVGS--KGLPLSGVVVLVNG--------------KSGGKTDAQGYYKLENLKTDGTYTITAKKEH 371 (1165)
T ss_pred EEeeeeEEeCC--CCCCccceEEEEcC--------------cccceEcccceEEeeeeeccCcEEEEEeccc
Confidence 47889988753 12788889888854 5667899999999999 99999999997543
No 23
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators. A nodal modulator has been identified as part of a protein complex that participates in the nodal signaling pathway during vertebrate development [].
Probab=93.86 E-value=0.24 Score=44.57 Aligned_cols=40 Identities=25% Similarity=0.471 Sum_probs=31.7
Q ss_pred eEEEeCCCcceEeCcccCcceEEEEEECceeeeeeeeeEEEEe
Q 010135 261 FWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDALVTIT 303 (517)
Q Consensus 261 ywt~td~~G~Fti~nVrpGtY~L~a~~~G~~G~~~~~~~VtV~ 303 (517)
+-+...++|.|.|.||++|+|.|.+-...+. |. .-.|.|.
T Consensus 22 ~~~~v~~dG~F~f~~Vp~GsY~L~V~s~~~~--F~-~~RVdV~ 61 (123)
T PF09430_consen 22 ISAFVRSDGSFVFHNVPPGSYLLEVHSPDYV--FP-PYRVDVS 61 (123)
T ss_pred eEEEecCCCEEEeCCCCCceEEEEEECCCcc--cc-CEEEEEe
Confidence 3788999999999999999999999876543 22 2357777
No 24
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.21 E-value=0.25 Score=49.33 Aligned_cols=65 Identities=25% Similarity=0.317 Sum_probs=48.2
Q ss_pred CCeEEEEEEEEecCCCccccCceEEEecCCCCCCCccccccccc-------eE--EEeCCCcceEeCcccCcceEEE
Q 010135 217 ERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQ-------FW--TTADEDGCFSIKNIRTGNYNLY 284 (517)
Q Consensus 217 ~RG~VsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~~~~~~~yq-------yw--t~td~~G~Fti~nVrpGtY~L~ 284 (517)
+|=.|+|+|+..+| +|..+|.|=+-+.+..|-.....+.+. =| +.||++|.|.|.-|+||.|--.
T Consensus 71 e~i~l~G~VlD~~G---~Pv~~A~VEiWQAda~GrY~~~~d~~~~~~~~f~g~Gr~~Td~~G~y~F~Ti~Pg~yp~~ 144 (226)
T COG3485 71 ERILLEGRVLDGNG---RPVPDALVEIWQADADGRYSHPKDSRLAPLPNFNGRGRTITDEDGEYRFRTIKPGPYPWR 144 (226)
T ss_pred ceEEEEEEEECCCC---CCCCCCEEEEEEcCCCCcccCccccccCcCccccceEEEEeCCCceEEEEEeecccccCC
Confidence 78999999998877 999999998866555554432222222 23 5689999999999999998543
No 25
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=92.76 E-value=0.24 Score=47.96 Aligned_cols=64 Identities=20% Similarity=0.369 Sum_probs=48.6
Q ss_pred CCCeEEEEEEEEecCCCccccCceEEEecCCCCCCCccccc-------cccceE--EEeCCCcceEeCcccCcceE
Q 010135 216 EERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTEC-------KDYQFW--TTADEDGCFSIKNIRTGNYN 282 (517)
Q Consensus 216 ~~RG~VsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~~~~~-------~~yqyw--t~td~~G~Fti~nVrpGtY~ 282 (517)
...=.|+|+|+..++ +|..+|.|-+......|....+. ..++.| ..||++|.|++.-|+||-|.
T Consensus 34 G~~l~l~G~V~D~~g---~Pi~gA~VeiWqad~~G~Y~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F~Ti~Pg~Y~ 106 (185)
T cd03463 34 GERITLEGRVYDGDG---APVPDAMLEIWQADAAGRYAHPADSRRRLDPGFRGFGRVATDADGRFSFTTVKPGAVP 106 (185)
T ss_pred CCEEEEEEEEECCCC---CCCCCCEEEEEcCCCCCccCCcCCcccccCCCCCcEEEEEECCCCCEEEEEEcCCCcC
Confidence 356789999997666 89999999987766666444321 344445 56999999999999999986
No 26
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=92.08 E-value=0.34 Score=45.77 Aligned_cols=64 Identities=23% Similarity=0.418 Sum_probs=48.3
Q ss_pred CCeEEEEEEEEecCCCccccCceEEEecCCCCCCCccccc--------cccceE--EEeCCCcceEeCcccCcceEE
Q 010135 217 ERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTEC--------KDYQFW--TTADEDGCFSIKNIRTGNYNL 283 (517)
Q Consensus 217 ~RG~VsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~~~~~--------~~yqyw--t~td~~G~Fti~nVrpGtY~L 283 (517)
++=.|+|+|+..++ .|..+|.|-+......|....+. .++..| ..||++|.|+|.-|+||-|.+
T Consensus 14 ~~l~l~g~V~D~~g---~Pv~~A~veiWqad~~G~Y~~~~~~~~~~~~~~f~~rG~~~Td~~G~~~f~Ti~Pg~Y~~ 87 (158)
T cd03459 14 ERIILEGRVLDGDG---RPVPDALVEIWQADAAGRYRHPRDSHRAPLDPNFTGFGRVLTDADGRYRFRTIKPGAYPW 87 (158)
T ss_pred cEEEEEEEEECCCC---CCCCCCEEEEEccCCCCccCCccCCcccccCCCCCceeEEEECCCCcEEEEEECCCCcCC
Confidence 45689999987665 89999999987766666444322 244444 468999999999999999984
No 27
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=91.63 E-value=1.7 Score=36.79 Aligned_cols=60 Identities=25% Similarity=0.415 Sum_probs=46.6
Q ss_pred CCeEEEEEEEEecCCCccccCceEEEecCCCCCCCccccccccceE--EEeCCCcceEeCcccCcceEEEEEECceee
Q 010135 217 ERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFW--TTADEDGCFSIKNIRTGNYNLYAWVPGFVG 292 (517)
Q Consensus 217 ~RG~VsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~~~~~~~yqyw--t~td~~G~Fti~nVrpGtY~L~a~~~G~~G 292 (517)
....|+|+|+ .++ .|..+++|-|-+... .|- ..|+..|.|.+- ..||+.+|.+-..+-.|
T Consensus 6 ke~VItG~V~-~~G---~Pv~gAyVRLLD~sg-----------EFtaEvvts~~G~FRFf-aapG~WtvRal~~~g~~ 67 (85)
T PF07210_consen 6 KETVITGRVT-RDG---EPVGGAYVRLLDSSG-----------EFTAEVVTSATGDFRFF-AAPGSWTVRALSRGGNG 67 (85)
T ss_pred ceEEEEEEEe-cCC---cCCCCeEEEEEcCCC-----------CeEEEEEecCCccEEEE-eCCCceEEEEEccCCCC
Confidence 4578999999 666 899999999875432 233 457899999995 89999999998765443
No 28
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=90.60 E-value=0.61 Score=45.07 Aligned_cols=64 Identities=23% Similarity=0.384 Sum_probs=40.2
Q ss_pred CCeEEEEEEEEecCCCccccCceEEEecCCCCCCCccccc-----c--ccceEEEeCCCcceEeCcccCcceEE
Q 010135 217 ERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTEC-----K--DYQFWTTADEDGCFSIKNIRTGNYNL 283 (517)
Q Consensus 217 ~RG~VsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~~~~~-----~--~yqywt~td~~G~Fti~nVrpGtY~L 283 (517)
+.=.|.|+|...+| +|..+|.|=+......|....+. . ...=+..||++|.|++.-|+||.|.+
T Consensus 28 ~~l~l~G~V~D~~g---~Pv~~A~veiWqada~G~Ys~~~~~~~~~~~~~rG~~~Td~~G~y~f~Ti~Pg~Y~~ 98 (183)
T PF00775_consen 28 EPLVLHGRVIDTDG---KPVPGALVEIWQADADGRYSGQDPGSDQPDFNLRGRFRTDADGRYSFRTIKPGPYPI 98 (183)
T ss_dssp -EEEEEEEEEETTS---SB-TTEEEEEEE--TTS--TTTBTTSSSSTTTTEEEEEECTTSEEEEEEE----EEE
T ss_pred CEEEEEEEEECCCC---CCCCCcEEEEEecCCCCccccccccccccCCCcceEEecCCCCEEEEEeeCCCCCCC
Confidence 45689999998776 89999999886655555333221 1 22234678999999999999999975
No 29
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=90.40 E-value=0.61 Score=47.19 Aligned_cols=65 Identities=12% Similarity=0.189 Sum_probs=48.4
Q ss_pred CCCeEEEEEEEEecCCCccccCceEEEecCCCCCCCccccc---cccce--EEEeCCCcceEeCcccCcceEE
Q 010135 216 EERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTEC---KDYQF--WTTADEDGCFSIKNIRTGNYNL 283 (517)
Q Consensus 216 ~~RG~VsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~~~~~---~~yqy--wt~td~~G~Fti~nVrpGtY~L 283 (517)
.+.=.|+|+|...+| +|..+|.|=+.....+|....+. ...++ +..||++|.|.|.-|+||-|-+
T Consensus 96 G~~l~v~G~V~D~~G---~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~F~Ti~P~~Ypi 165 (246)
T TIGR02465 96 HKPLLIRGTVRDLSG---TPVAGAVIDVWHSTPDGKYSGFHDNIPDDYYRGKLVTAADGSYEVRTTMPVPYQI 165 (246)
T ss_pred CcEEEEEEEEEcCCC---CCcCCcEEEEECCCCCCCCCCCCCCCCCCCCeEEEEECCCCCEEEEEECCCCCCC
Confidence 345789999997666 89999999987666666443221 22333 5778999999999999999853
No 30
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsB is 85.3kDa []. BcsB encodes the catalytic subunit of cellulose synthase. The protein polymerises uridine 5'-diphosphate glucose to cellulose: UDP-glucose + (1,4-beta-D-glucosyl)(N) = UDP + (1,4-beta-D-glucosyl)(N+1). The enzyme is specifically activated by the nucleotide cyclic diguanylic acid. Sequence analysis suggests that BcsB contains several transmembrane (TM) domains, and shares a high degree of similarity with Escherichia coli YhjN.; GO: 0006011 UDP-glucose metabolic process, 0016020 membrane
Probab=90.35 E-value=0.66 Score=52.46 Aligned_cols=78 Identities=15% Similarity=0.140 Sum_probs=56.2
Q ss_pred ccEEEEEEeCCCCCCCcEEEEEEEeccC-----CCeEEEEEcCCCCCCCcccccccCCCCceecceeeeeeEEEEEEeeC
Q 010135 406 TTWQIKFKLDHVDRNSSYKLRVAIASAT-----LAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPG 480 (517)
Q Consensus 406 ~~w~I~F~L~~~~~~~~~tLriala~a~-----~~~~~V~vN~~~~~~~~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa 480 (517)
..-.|.|.+...+....++|+|.+.-+. .+.++|.|||..+. +..+...+. .....+|+||.
T Consensus 29 ~~~~~~f~v~~~~~v~~a~L~L~~~~S~~l~~~~S~L~V~lNg~~v~-----s~~l~~~~~--------~~~~~~i~Ip~ 95 (605)
T PF03170_consen 29 ASRTIYFPVPADWVVTKATLNLSYTYSPSLLPERSQLTVSLNGQPVG-----SIPLDAESA--------QPQTVTIPIPP 95 (605)
T ss_pred CceEEEEEcCCCccccceEEEEEEEECcccCCCcceEEEEECCEEeE-----EEecCcCCC--------CceEEEEecCh
Confidence 4567778887776556788888877652 36899999998664 122222221 24778999999
Q ss_pred CCeeeeecEEEEEeecC
Q 010135 481 TRFIEGENTIFLKQPRC 497 (517)
Q Consensus 481 ~~L~~G~NtI~l~~~~g 497 (517)
. |..|.|.|+|.....
T Consensus 96 ~-l~~g~N~l~~~~~~~ 111 (605)
T PF03170_consen 96 A-LIKGFNRLTFEFIGH 111 (605)
T ss_pred h-hcCCceEEEEEEEec
Confidence 9 999999999987543
No 31
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=90.22 E-value=0.73 Score=53.41 Aligned_cols=58 Identities=26% Similarity=0.358 Sum_probs=43.3
Q ss_pred eEEEEEEEEecCCCccccCceEEEecCCCCCCCccccccccceEEEeCCCcceEeCcccCcceEEEEEECc
Q 010135 219 GCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPG 289 (517)
Q Consensus 219 G~VsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~~~~~~~yqywt~td~~G~Fti~nVrpGtY~L~a~~~G 289 (517)
-+|+|+|.+.-+ -...++.|-|... .+.---|.|+++|.|.+.||.||+|.+.|....
T Consensus 119 Fsv~GkVlgaag---gGpagV~velrs~----------e~~iast~T~~~Gky~f~~iiPG~Yev~ashp~ 176 (1165)
T KOG1948|consen 119 FSVRGKVLGAAG---GGPAGVLVELRSQ----------EDPIASTKTEDGGKYEFRNIIPGKYEVSASHPA 176 (1165)
T ss_pred eeEeeEEeeccC---CCcccceeecccc----------cCcceeeEecCCCeEEEEecCCCceEEeccCcc
Confidence 367777776543 3456677877543 344566889999999999999999999998654
No 32
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=90.17 E-value=0.62 Score=45.43 Aligned_cols=65 Identities=23% Similarity=0.422 Sum_probs=48.0
Q ss_pred CCCeEEEEEEEEecCCCccccCceEEEecCCCCCCCccccc--------cccceE--EEeCCCcceEeCcccCcceEE
Q 010135 216 EERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTEC--------KDYQFW--TTADEDGCFSIKNIRTGNYNL 283 (517)
Q Consensus 216 ~~RG~VsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~~~~~--------~~yqyw--t~td~~G~Fti~nVrpGtY~L 283 (517)
.++=.|+|+|+..+| +|..+|.|=+-.....|....+. .+++-| ..||++|+|++.-|+||.|..
T Consensus 37 G~~l~l~G~V~D~~g---~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~~~f~grGr~~Td~~G~y~f~TI~Pg~Yp~ 111 (193)
T TIGR02423 37 GERIRLEGRVLDGDG---HPVPDALIEIWQADAAGRYNSPADLRAPATDPGFRGWGRTGTDESGEFTFETVKPGAVPD 111 (193)
T ss_pred CCEEEEEEEEECCCC---CCCCCCEEEEEccCCCCccCCccCCcccccCCCCCCeEEEEECCCCCEEEEEEcCCCcCC
Confidence 456789999996655 89999999987666566444321 133434 468999999999999998864
No 33
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=89.69 E-value=0.44 Score=37.29 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=22.1
Q ss_pred eEEEeCCCc-ceEeCcccCcceEEEEEEC
Q 010135 261 FWTTADEDG-CFSIKNIRTGNYNLYAWVP 288 (517)
Q Consensus 261 ywt~td~~G-~Fti~nVrpGtY~L~a~~~ 288 (517)
=|....... .+++.+++||+|+|.|.+.
T Consensus 20 ~W~~~~~~~~~~~~~~L~~G~Y~l~V~a~ 48 (66)
T PF07495_consen 20 EWITLGSYSNSISYTNLPPGKYTLEVRAK 48 (66)
T ss_dssp SEEEESSTS-EEEEES--SEEEEEEEEEE
T ss_pred eEEECCCCcEEEEEEeCCCEEEEEEEEEE
Confidence 377777777 9999999999999999963
No 34
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=89.48 E-value=0.86 Score=45.38 Aligned_cols=66 Identities=24% Similarity=0.403 Sum_probs=48.3
Q ss_pred CCCCeEEEEEEEEecCCCccccCceEEEecCCCCCCCcccc--------ccccceE--EEeCCCcceEeCcccCcceEE
Q 010135 215 SEERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTE--------CKDYQFW--TTADEDGCFSIKNIRTGNYNL 283 (517)
Q Consensus 215 ~~~RG~VsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~~~~--------~~~yqyw--t~td~~G~Fti~nVrpGtY~L 283 (517)
..++=.|+|+|...+| +|..+|.|=+......|....+ ..+++.+ ..||++|.|.|.-|+||.|.+
T Consensus 62 ~G~~i~l~G~V~D~~G---~PV~~A~VEIWQad~~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~Pg~Yp~ 137 (220)
T cd03464 62 IGERIIVHGRVLDEDG---RPVPNTLVEIWQANAAGRYRHKRDQHDAPLDPNFGGAGRTLTDDDGYYRFRTIKPGAYPW 137 (220)
T ss_pred CCCEEEEEEEEECCCC---CCCCCCEEEEEecCCCCcccCccCCcccccCCCCCCEEEEEECCCccEEEEEECCCCccC
Confidence 3456889999997666 8999999998766555544322 1233333 468999999999999999944
No 35
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=89.35 E-value=0.9 Score=45.23 Aligned_cols=67 Identities=24% Similarity=0.386 Sum_probs=48.1
Q ss_pred CCCCCeEEEEEEEEecCCCccccCceEEEecCCCCCCCccccc--------cccceE--EEeCCCcceEeCcccCcceEE
Q 010135 214 KSEERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTEC--------KDYQFW--TTADEDGCFSIKNIRTGNYNL 283 (517)
Q Consensus 214 ~~~~RG~VsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~~~~~--------~~yqyw--t~td~~G~Fti~nVrpGtY~L 283 (517)
+..++=.|+|+|+..+| +|..+|.|=+......|....+. .++.-+ ..||++|.|+|.-|+||-|..
T Consensus 56 ~~G~~i~l~G~V~D~~g---~PV~~A~VEIWQada~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~PG~Y~~ 132 (220)
T TIGR02422 56 PIGERIIVHGRVLDEDG---RPVPNTLVEVWQANAAGRYRHKNDQYLAPLDPNFGGVGRTLTDSDGYYRFRTIKPGPYPW 132 (220)
T ss_pred CCCCEEEEEEEEECCCC---CCCCCCEEEEEecCCCCcccCccCccccccCCCCCCEEEEEECCCccEEEEEECCCCccC
Confidence 34567889999997666 89999999886655555333221 123323 458999999999999999944
No 36
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=89.24 E-value=0.61 Score=47.17 Aligned_cols=65 Identities=14% Similarity=0.192 Sum_probs=46.7
Q ss_pred CCCeEEEEEEEEecCCCccccCceEEEecCCCCCCCccccc---cccce--EEEeCCCcceEeCcccCcceEE
Q 010135 216 EERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTEC---KDYQF--WTTADEDGCFSIKNIRTGNYNL 283 (517)
Q Consensus 216 ~~RG~VsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~~~~~---~~yqy--wt~td~~G~Fti~nVrpGtY~L 283 (517)
.++=.|+|+|...+| +|..+|.|=+......|....+. ....+ ...||++|.|.+.-|+||.|-+
T Consensus 97 G~~l~l~G~V~D~~G---~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~RG~~~Td~~G~y~F~Ti~P~~Ypi 166 (247)
T cd03462 97 HKPLLFRGTVKDLAG---APVAGAVIDVWHSTPDGKYSGFHPNIPEDYYRGKIRTDEDGRYEVRTTVPVPYQI 166 (247)
T ss_pred CCEEEEEEEEEcCCC---CCcCCcEEEEECCCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEEEECCCCcCC
Confidence 456789999997776 89999999886665555333211 11111 4568999999999999999943
No 37
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=87.95 E-value=1.6 Score=44.42 Aligned_cols=65 Identities=23% Similarity=0.335 Sum_probs=47.8
Q ss_pred CCCeEEEEEEEEecCCCccccCceEEEecCCCCCCCcccc---ccccceE--EEeCCCcceEeCcccCcceEE
Q 010135 216 EERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTE---CKDYQFW--TTADEDGCFSIKNIRTGNYNL 283 (517)
Q Consensus 216 ~~RG~VsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~~~~---~~~yqyw--t~td~~G~Fti~nVrpGtY~L 283 (517)
.++=.|+|+|...+| +|..+|.|=+-.....|....+ ......+ ..||++|.|.+.-|+||-|-+
T Consensus 102 G~~l~l~G~V~D~~G---~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~f~Ti~P~~Ypi 171 (256)
T cd03458 102 GEPLFVHGTVTDTDG---KPLAGATVDVWHADPDGFYSQQDPDQPEFNLRGKFRTDEDGRYRFRTIRPVPYPI 171 (256)
T ss_pred CcEEEEEEEEEcCCC---CCCCCcEEEEEccCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEEEECCCCccC
Confidence 456789999997776 8889999988766555633321 1233333 568999999999999999954
No 38
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=86.82 E-value=1 Score=46.37 Aligned_cols=65 Identities=23% Similarity=0.335 Sum_probs=46.7
Q ss_pred CCCeEEEEEEEEecCCCccccCceEEEecCCCCCCCccccc---cccce--EEEeCCCcceEeCcccCcceEE
Q 010135 216 EERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTEC---KDYQF--WTTADEDGCFSIKNIRTGNYNL 283 (517)
Q Consensus 216 ~~RG~VsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~~~~~---~~yqy--wt~td~~G~Fti~nVrpGtY~L 283 (517)
.++=.|+|+|...+| +|..+|.|-+......|....+. ...++ ...||++|.|.+.-|+||-|-+
T Consensus 130 G~pl~v~G~V~D~~G---~Pv~gA~VdiWqada~G~Ys~~~~~~~~~~lRGr~~TDadG~y~F~TI~Pg~Ypi 199 (281)
T TIGR02438 130 GTPLVFSGQVTDLDG---NGLAGAKVELWHADDDGFYSQFAPGIPEWNLRGTIIADDEGRFEITTMQPAPYQI 199 (281)
T ss_pred CCEEEEEEEEEcCCC---CCcCCCEEEEEecCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEEEECCCCcCC
Confidence 456789999997676 89999999886555555332211 12222 2568999999999999999964
No 39
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=84.98 E-value=2.1 Score=44.17 Aligned_cols=65 Identities=18% Similarity=0.276 Sum_probs=48.7
Q ss_pred CCCeEEEEEEEEecCCCccccCceEEEecCCCCCCCcccc---ccccce--EEEeCCCcceEeCcccCcceEE
Q 010135 216 EERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTE---CKDYQF--WTTADEDGCFSIKNIRTGNYNL 283 (517)
Q Consensus 216 ~~RG~VsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~~~~---~~~yqy--wt~td~~G~Fti~nVrpGtY~L 283 (517)
.++=.|+|+|+..+| +|..+|.|=+......|....+ ..+++. ...||++|.|.+.-|+||-|-+
T Consensus 122 Gepl~l~G~V~D~~G---~PI~~A~VeiWqad~~G~Ys~~~~~~~~f~~RGr~~TD~~G~y~F~TI~P~~Ypi 191 (282)
T cd03460 122 GETLVMHGTVTDTDG---KPVPGAKVEVWHANSKGFYSHFDPTQSPFNLRRSIITDADGRYRFRSIMPSGYGV 191 (282)
T ss_pred CCEEEEEEEEECCCC---CCcCCcEEEEECCCCCCCcCCCCCCCCCCCCceEEEeCCCCCEEEEEECCCCCcC
Confidence 467889999997776 8999999988776666644321 123333 3668999999999999999954
No 40
>smart00606 CBD_IV Cellulose Binding Domain Type IV.
Probab=84.97 E-value=11 Score=33.33 Aligned_cols=89 Identities=18% Similarity=0.350 Sum_probs=50.7
Q ss_pred ccEEEEEE-eCCCCCCCcEEEEEEEeccC-CCeEEEEEcCCCCCCCcccccccCCCCceecceeeeeeEEEEEEeeCCCe
Q 010135 406 TTWQIKFK-LDHVDRNSSYKLRVAIASAT-LAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRF 483 (517)
Q Consensus 406 ~~w~I~F~-L~~~~~~~~~tLriala~a~-~~~~~V~vN~~~~~~~~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L 483 (517)
+.| |.|+ ++-. ..+.++++|-.+... .+.++|++++... ++..+..++.... . -.++..+.+|+ |
T Consensus 39 g~w-~~y~~vd~~-~~g~~~i~~~~as~~~~~~i~v~~d~~~G--~~~~~~~~p~tg~-----~-~~~~~~~~~v~---~ 105 (129)
T smart00606 39 GDW-IAYKDVDFG-SSGAYTFTARVASGNAGGSIELRLDSPTG--TLVGTVDVPSTGG-----W-QTYQTVSATVT---L 105 (129)
T ss_pred CCE-EEEEeEecC-CCCceEEEEEEeCCCCCceEEEEECCCCC--cEEEEEEeCCCCC-----C-ccCEEEEEEEc---c
Confidence 344 5565 5432 247788888777654 4689999997432 1222233332221 0 12344445553 4
Q ss_pred eeeecEEEEEeecCCCCCceEEEEEEEE
Q 010135 484 IEGENTIFLKQPRCTSPFQGIMYDYIRL 511 (517)
Q Consensus 484 ~~G~NtI~l~~~~g~s~~~~vmyD~I~L 511 (517)
.+|.++|+|....++ .+..|.+++
T Consensus 106 ~~G~~~l~~~~~~~~----~~~ld~~~F 129 (129)
T smart00606 106 PAGVHDVYLVFKGGN----YFNIDWFRF 129 (129)
T ss_pred CCceEEEEEEEECCC----cEEEEEEEC
Confidence 489999999876543 277777653
No 41
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=84.70 E-value=2 Score=44.41 Aligned_cols=65 Identities=18% Similarity=0.295 Sum_probs=48.3
Q ss_pred CCCeEEEEEEEEecCCCccccCceEEEecCCCCCCCcccc---ccccceE--EEeCCCcceEeCcccCcceEE
Q 010135 216 EERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTE---CKDYQFW--TTADEDGCFSIKNIRTGNYNL 283 (517)
Q Consensus 216 ~~RG~VsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~~~~---~~~yqyw--t~td~~G~Fti~nVrpGtY~L 283 (517)
.++=.|+|+|+..+| +|..+|.|=+......|....+ ...++.+ ..||++|.|.+.-|+||-|-+
T Consensus 126 G~pl~v~G~V~D~~G---~PI~gA~VeIWqad~~G~Ys~~~~~~~~~~lRG~~~TD~~G~y~F~TI~P~~Ypi 195 (285)
T TIGR02439 126 GETLFLHGQVTDADG---KPIAGAKVELWHANTKGNYSHFDKSQSEFNLRRTIITDAEGRYRARSIVPSGYGC 195 (285)
T ss_pred CcEEEEEEEEECCCC---CCcCCcEEEEEccCCCCCcCCCCCCCCCCCceEEEEECCCCCEEEEEECCCCCcC
Confidence 456789999997766 8999999988766666644321 2233333 568999999999999999964
No 42
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=84.34 E-value=1.5 Score=40.50 Aligned_cols=69 Identities=20% Similarity=0.184 Sum_probs=45.8
Q ss_pred cEEEEEEeCCCCCCCcEEEEEEEeccCCCeEEEEEcCCCCCCCcccccccCCCCceecceeeeeeEEEEEEeeCCCeeee
Q 010135 407 TWQIKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEG 486 (517)
Q Consensus 407 ~w~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vN~~~~~~~~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G 486 (517)
-.+=+|+|++......+.|++.-. .....|.|||+.++ ...|.+..++++|+. .|+.|
T Consensus 71 wYr~~f~lp~~~~~~~~~L~f~gv---~~~a~v~vNG~~vg------------------~~~~~~~~~~~dIt~-~l~~g 128 (167)
T PF02837_consen 71 WYRRTFTLPADWKGKRVFLRFEGV---DYAAEVYVNGKLVG------------------SHEGGYTPFEFDITD-YLKPG 128 (167)
T ss_dssp EEEEEEEESGGGTTSEEEEEESEE---ESEEEEEETTEEEE------------------EEESTTS-EEEECGG-GSSSE
T ss_pred EEEEEEEeCchhcCceEEEEeccc---eEeeEEEeCCeEEe------------------eeCCCcCCeEEeChh-hccCC
Confidence 345568887754333445555433 36778999997442 123456789999975 88999
Q ss_pred e-cEEEEEeecC
Q 010135 487 E-NTIFLKQPRC 497 (517)
Q Consensus 487 ~-NtI~l~~~~g 497 (517)
. |+|.+.+.+-
T Consensus 129 ~~N~l~V~v~~~ 140 (167)
T PF02837_consen 129 EENTLAVRVDNW 140 (167)
T ss_dssp EEEEEEEEEESS
T ss_pred CCEEEEEEEeec
Confidence 8 9999999753
No 43
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=84.30 E-value=1.6 Score=44.91 Aligned_cols=65 Identities=23% Similarity=0.386 Sum_probs=47.7
Q ss_pred CCCeEEEEEEEEecCCCccccCceEEEecCCCCCCCcccc---ccccce--EEEeCCCcceEeCcccCcceEE
Q 010135 216 EERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTE---CKDYQF--WTTADEDGCFSIKNIRTGNYNL 283 (517)
Q Consensus 216 ~~RG~VsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~~~~---~~~yqy--wt~td~~G~Fti~nVrpGtY~L 283 (517)
.++=.|+|+|...+| +|..+|.|=+......|....+ ...... ...||++|.|.+.-|+||-|-+
T Consensus 118 G~~l~v~G~V~D~~G---~Pv~gA~VeiWqad~~G~Y~~~~~~~~~~~lRGr~~Td~~G~y~F~Ti~Pg~Ypi 187 (277)
T cd03461 118 GEPCFVHGRVTDTDG---KPLPGATVDVWQADPNGLYDVQDPDQPEFNLRGKFRTDEDGRYAFRTLRPTPYPI 187 (277)
T ss_pred CCEEEEEEEEEcCCC---CCcCCcEEEEECcCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEEEECCCCcCC
Confidence 456789999997776 8899999988666555533321 122222 2568999999999999999975
No 44
>PRK11114 cellulose synthase regulator protein; Provisional
Probab=84.14 E-value=1.7 Score=50.75 Aligned_cols=74 Identities=22% Similarity=0.256 Sum_probs=49.0
Q ss_pred EEEEEeCCCCCCCcEEEEEEEecc-----CCCeEEEEEcCCCCCCCcccccccCCCCceecceeeeeeEEEEEEeeCCCe
Q 010135 409 QIKFKLDHVDRNSSYKLRVAIASA-----TLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRF 483 (517)
Q Consensus 409 ~I~F~L~~~~~~~~~tLriala~a-----~~~~~~V~vN~~~~~~~~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L 483 (517)
.|.|.+...+....++|+|...-+ ..++++|.|||+.++ +..+...+ .|.....+|+||+ .|
T Consensus 84 ~i~f~vp~d~~v~~A~L~L~y~~Sp~l~~~~S~L~V~lNg~~v~-----s~pL~~~~-------~~~~~~~~i~IP~-~l 150 (756)
T PRK11114 84 GIEFGVRSDEVVTKARLNLEYTYSPALLPDLSHLKVYLNGELMG-----TLPLDKEQ-------LGKKVLAQLPIDP-RF 150 (756)
T ss_pred eeEeecCccccccCcEEEEEEEECCCCCCCCCeEEEEECCEEeE-----EEecCccc-------CCCcceeEEecCH-HH
Confidence 666776665544556666665554 247999999998653 11222111 2445788999999 56
Q ss_pred eeeecEEEEEee
Q 010135 484 IEGENTIFLKQP 495 (517)
Q Consensus 484 ~~G~NtI~l~~~ 495 (517)
..|.|.|+|...
T Consensus 151 ~~g~N~L~~~~~ 162 (756)
T PRK11114 151 ITDFNRLRLEFI 162 (756)
T ss_pred cCCCceEEEEEe
Confidence 689999999864
No 45
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=80.65 E-value=3.1 Score=37.20 Aligned_cols=48 Identities=21% Similarity=0.185 Sum_probs=34.9
Q ss_pred cccCceEEEecCCCCCCCccccccccceEEEeCCCcceE-----eCcccCcceEEEEEE
Q 010135 234 ISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFS-----IKNIRTGNYNLYAWV 287 (517)
Q Consensus 234 ~pa~~a~V~L~~~~~~g~~~~~~~~yqywt~td~~G~Ft-----i~nVrpGtY~L~a~~ 287 (517)
+||.++.|.|..... +.|+ .---+.||++|+.. ...+.||.|+|..-.
T Consensus 14 ~PAagv~V~L~~~~~-~~~~-----~i~~~~Tn~DGR~~~~l~~~~~~~~G~Y~l~F~~ 66 (112)
T TIGR02962 14 KPAAGVPVTLYRLDG-SGWT-----PLAEGVTNADGRCPDLLPEGETLAAGIYKLRFDT 66 (112)
T ss_pred ccCCCCEEEEEEecC-CCeE-----EEEEEEECCCCCCcCcccCcccCCCeeEEEEEEh
Confidence 999999999974321 1233 12346799999987 456789999999875
No 46
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=79.86 E-value=4.8 Score=35.53 Aligned_cols=55 Identities=20% Similarity=0.171 Sum_probs=34.9
Q ss_pred EEEE-EEEeccCCCeEEEEEcCCCCCCCcccccccCCCCceecceeeeeeEEEEEEeeCCCeeeeecEEEEEe
Q 010135 423 YKLR-VAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLKQ 494 (517)
Q Consensus 423 ~tLr-iala~a~~~~~~V~vN~~~~~~~~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~NtI~l~~ 494 (517)
..|+ +.+......+.+|.|||+.++. +.+++ | ...+|.||+++|+.++|.|.+-+
T Consensus 50 ~~~~~l~~~~g~~~~~~vwVNG~~~G~--------------~~~~~-g--~q~tf~~p~~il~~~n~v~~vl~ 105 (111)
T PF13364_consen 50 TSLTPLNIQGGNAFRASVWVNGWFLGS--------------YWPGI-G--PQTTFSVPAGILKYGNNVLVVLW 105 (111)
T ss_dssp EEEE-EEECSSTTEEEEEEETTEEEEE--------------EETTT-E--CCEEEEE-BTTBTTCEEEEEEEE
T ss_pred eeEEEEeccCCCceEEEEEECCEEeee--------------ecCCC-C--ccEEEEeCceeecCCCEEEEEEE
Confidence 4555 5555566789999999986641 01111 1 12889999999999855555433
No 47
>KOG2649 consensus Zinc carboxypeptidase [General function prediction only]
Probab=78.80 E-value=5.6 Score=43.75 Aligned_cols=102 Identities=14% Similarity=0.262 Sum_probs=65.7
Q ss_pred CCCCCchhhHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCeEEEEEEEEecCCCccccCceEEEecCCCCCCCccccccc
Q 010135 179 ADGDDPLWLWEDAKIKMMSEVQSWPYNFPASEDFQKSEERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKD 258 (517)
Q Consensus 179 ~~~~~~~~l~~Da~~~~~~E~~~wpy~f~~s~~y~~~~~RG~VsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~~~~~~~ 258 (517)
+..+....+|++-|.-+.+ |+..-. --|+|-|....| +|..+|+|.+..-.
T Consensus 353 P~e~eLp~~WE~Nr~sLl~--------------f~eqvH-~GIkG~V~D~~G---~~I~NA~IsV~gin----------- 403 (500)
T KOG2649|consen 353 PKESELPTLWEYNRKSLLN--------------FVEQVH-RGIKGLVFDDTG---NPIANATISVDGIN----------- 403 (500)
T ss_pred CchhhhHHHHHhhHHHHHH--------------HHHHHH-hccceeEEcCCC---CccCceEEEEecCc-----------
Confidence 3334467789888764431 221112 348999987666 89999999996542
Q ss_pred cceEEEeCCCcc-eEeCcccCcceEEEEEECceeeeeeeeeEEEEeCCceeeecceEEcC
Q 010135 259 YQFWTTADEDGC-FSIKNIRTGNYNLYAWVPGFVGDYRSDALVTITSGSNIKMGDLVYEP 317 (517)
Q Consensus 259 yqywt~td~~G~-Fti~nVrpGtY~L~a~~~G~~G~~~~~~~VtV~aG~t~~l~~l~~~~ 317 (517)
-=.+|...|. +.+ ..||.|.|+|.+.|+. ....+|+|..-..+.. ++++..
T Consensus 404 --Hdv~T~~~GDYWRL--L~PG~y~vta~A~Gy~---~~tk~v~V~~~~a~~~-df~L~~ 455 (500)
T KOG2649|consen 404 --HDVTTAKEGDYWRL--LPPGKYIITASAEGYD---PVTKTVTVPPDRAARV-NFTLQR 455 (500)
T ss_pred --CceeecCCCceEEe--eCCcceEEEEecCCCc---ceeeEEEeCCCCccce-eEEEec
Confidence 1234555664 344 7899999999998864 4556788887333334 577744
No 48
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=77.43 E-value=7.4 Score=37.24 Aligned_cols=62 Identities=21% Similarity=0.216 Sum_probs=46.5
Q ss_pred CeEEEEEEEEecCCCccccCceEEEecCCCCCCCccccccccceEEEeCCCcceEeCcccCcceEEEEEE
Q 010135 218 RGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWV 287 (517)
Q Consensus 218 RG~VsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~~~~~~~yqywt~td~~G~Fti~nVrpGtY~L~a~~ 287 (517)
-..++.+|+ -+| +|..++.|.+...+. |. +........+||++|.++|+=-+||.|-|.|-.
T Consensus 150 g~~~~~~vl-~~G---kPl~~a~V~~~~~~~---~~-~~~~~~~~~~TD~~G~~~~~~~~~G~wli~a~~ 211 (215)
T PF10670_consen 150 GDPLPFQVL-FDG---KPLAGAEVEAFSPGG---WY-DVEHEAKTLKTDANGRATFTLPRPGLWLIRASH 211 (215)
T ss_pred CCEEEEEEE-ECC---eEcccEEEEEEECCC---cc-ccccceEEEEECCCCEEEEecCCCEEEEEEEEE
Confidence 357888888 466 899999998865432 11 112227888999999999998899999998854
No 49
>PF14900 DUF4493: Domain of unknown function (DUF4493)
Probab=77.24 E-value=70 Score=31.65 Aligned_cols=52 Identities=17% Similarity=0.394 Sum_probs=32.7
Q ss_pred ceEEEeCCC-cceEeCcccCcceEEEEEECc--eee----eeeeeeEEEEeCCceeeecceEE
Q 010135 260 QFWTTADED-GCFSIKNIRTGNYNLYAWVPG--FVG----DYRSDALVTITSGSNIKMGDLVY 315 (517)
Q Consensus 260 qywt~td~~-G~Fti~nVrpGtY~L~a~~~G--~~G----~~~~~~~VtV~aG~t~~l~~l~~ 315 (517)
.++..++-. +.+. +++|+|+|.|+... ..| .|.-+++++|.+|+++++. ++-
T Consensus 48 ~~~~~~~~~~~~i~---L~~G~Ytv~A~~g~~~~~~~d~pyy~G~~~f~I~~g~~t~v~-v~C 106 (235)
T PF14900_consen 48 KYWKYSEMPGESIE---LPVGSYTVKASYGDNVAAGFDKPYYEGSTTFTIEKGETTTVS-VTC 106 (235)
T ss_pred EecchhccccceEe---ecCCcEEEEEEcCCCccccccCceeecceeEEEecCCcEEEE-EEE
Confidence 444444444 3333 67999999999421 112 1444668999999998874 544
No 50
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsB is 85.3kDa []. BcsB encodes the catalytic subunit of cellulose synthase. The protein polymerises uridine 5'-diphosphate glucose to cellulose: UDP-glucose + (1,4-beta-D-glucosyl)(N) = UDP + (1,4-beta-D-glucosyl)(N+1). The enzyme is specifically activated by the nucleotide cyclic diguanylic acid. Sequence analysis suggests that BcsB contains several transmembrane (TM) domains, and shares a high degree of similarity with Escherichia coli YhjN.; GO: 0006011 UDP-glucose metabolic process, 0016020 membrane
Probab=76.43 E-value=4.2 Score=46.03 Aligned_cols=78 Identities=19% Similarity=0.190 Sum_probs=52.5
Q ss_pred CccEEEEEEeCCCC---CCCcEEEEEEEecc-----CCCeEEEEEcCCCCCCCcccccccCCCCceecceeeeeeEEEEE
Q 010135 405 GTTWQIKFKLDHVD---RNSSYKLRVAIASA-----TLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHV 476 (517)
Q Consensus 405 ~~~w~I~F~L~~~~---~~~~~tLriala~a-----~~~~~~V~vN~~~~~~~~~~~~~~~~~~~i~R~~~~G~~~~~~~ 476 (517)
+.+..+.|.|+..- .....+|.+..+.+ ..+++.|.|||+-+. .+ .+.+ +-.+....+++
T Consensus 323 ~~~~~~~f~lP~dl~~~~~~~i~l~L~y~y~~~~~~~~S~l~V~vNg~~i~-s~----~L~~-------~~~~~~~~~~v 390 (605)
T PF03170_consen 323 PQPISFNFRLPPDLFAWDGSGIPLHLRYRYTPGLDFDGSRLTVYVNGQFIG-SL----PLTP-------ADGAGFDRYTV 390 (605)
T ss_pred CCcceeEeeCCccccccCCCceEEEEEEecCCCCCCCCcEEEEEECCEEEE-eE----ECCC-------CCCCccceeEE
Confidence 35778888886631 23445666665554 257899999998664 11 2211 22335678999
Q ss_pred EeeCCCeeeeecEEEEEee
Q 010135 477 NIPGTRFIEGENTIFLKQP 495 (517)
Q Consensus 477 ~ipa~~L~~G~NtI~l~~~ 495 (517)
.|| ..++.|.|+|+|...
T Consensus 391 ~iP-~~~~~~~N~l~~~f~ 408 (605)
T PF03170_consen 391 SIP-RLLLPGRNQLQFEFD 408 (605)
T ss_pred ecC-chhcCCCcEEEEEEE
Confidence 999 999999999988753
No 51
>PF00576 Transthyretin: HIUase/Transthyretin family; InterPro: IPR023416 This family includes transthyretin that is a thyroid hormone-binding protein that transports thyroxine from the bloodstream to the brain. However, most of the sequences listed in this family do not bind thyroid hormones. They are actually enzymes of the purine catabolism that catalyse the conversion of 5-hydroxyisourate (HIU) to OHCU [, ]. HIU hydrolysis is the original function of the family and is conserved from bacteria to mammals; transthyretins arose by gene duplications in the vertebrate lineage [, ]. HIUases are distinguished in the alignment from the conserved C-terminal YRGS sequence. Transthyretin (formerly prealbumin) is one of 3 thyroid hormone-binding proteins found in the blood of vertebrates []. It is produced in the liver and circulates in the bloodstream, where it binds retinol and thyroxine (T4) []. It differs from the other 2 hormone-binding proteins (T4-binding globulin and albumin) in 3 distinct ways: (1) the gene is expressed at a high rate in the brain choroid plexus; (2) it is enriched in cerebrospinal fluid; and (3) no genetically caused absence has been observed, suggesting an essential role in brain function, distinct from that played in the bloodstream []. The protein consists of around 130 amino acids, which assemble as a homotetramer that contains an internal channel in which T4 is bound. Within this complex, T4 appears to be transported across the blood-brain barrier, where, in the choroid plexus, the hormone stimulates further synthesis of transthyretin. The protein then diffuses back into the bloodstream, where it binds T4 for transport back to the brain [].; PDB: 1TFP_B 1KGJ_D 1IE4_C 1GKE_C 1KGI_D 2H0J_B 2H0E_B 2H0F_B 1ZD6_A 3DGD_D ....
Probab=76.03 E-value=4.3 Score=36.25 Aligned_cols=49 Identities=27% Similarity=0.269 Sum_probs=34.0
Q ss_pred cccCceEEEecCCCCCCCccccccccceEEEeCCCcce-----EeCcccCcceEEEEEE
Q 010135 234 ISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCF-----SIKNIRTGNYNLYAWV 287 (517)
Q Consensus 234 ~pa~~a~V~L~~~~~~g~~~~~~~~yqywt~td~~G~F-----ti~nVrpGtY~L~a~~ 287 (517)
+||.++.|.|....+.++|+. -.-+.||++|+. .-..+.+|.|+|..-.
T Consensus 14 ~PA~gv~V~L~~~~~~~~~~~-----l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~ 67 (112)
T PF00576_consen 14 KPAAGVPVTLYRLDSDGSWTL-----LAEGVTDADGRIKQPLLEGESLEPGIYKLVFDT 67 (112)
T ss_dssp EE-TT-EEEEEEEETTSCEEE-----EEEEEBETTSEESSTSSETTTS-SEEEEEEEEH
T ss_pred CCccCCEEEEEEecCCCCcEE-----EEEEEECCCCcccccccccccccceEEEEEEEH
Confidence 999999999975443444552 344679999987 4467889999999864
No 52
>PLN03059 beta-galactosidase; Provisional
Probab=75.50 E-value=3 Score=48.98 Aligned_cols=86 Identities=10% Similarity=0.103 Sum_probs=53.9
Q ss_pred ccEEEEEEeCCCCCCCcEEEEEEEeccCCCeEEEEEcCCCCCCCcccc--cccCCCCceeccee--------eeeeEEEE
Q 010135 406 TTWQIKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNANRPLFTT--GLIGRDNAIARHGI--------HGLYLLYH 475 (517)
Q Consensus 406 ~~w~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vN~~~~~~~~~~~--~~~~~~~~i~R~~~--------~G~~~~~~ 475 (517)
+=.+-.|++++.. .. ++|-....+.=.|.|||+.++. -+.. ..-+=+.|-+|+++ .|.....-
T Consensus 621 twYK~~Fd~p~g~--Dp----v~LDm~gmGKG~aWVNG~nIGR-YW~~~a~~~gC~~c~y~g~~~~~kc~~~cggP~q~l 693 (840)
T PLN03059 621 TWYKTTFDAPGGN--DP----LALDMSSMGKGQIWINGQSIGR-HWPAYTAHGSCNGCNYAGTFDDKKCRTNCGEPSQRW 693 (840)
T ss_pred eEEEEEEeCCCCC--CC----EEEecccCCCeeEEECCccccc-ccccccccCCCccccccccccchhhhccCCCceeEE
Confidence 3446678764321 11 2233345566689999999974 3322 22222456777776 24566677
Q ss_pred EEeeCCCeeeeecEEEEEeecCC
Q 010135 476 VNIPGTRFIEGENTIFLKQPRCT 498 (517)
Q Consensus 476 ~~ipa~~L~~G~NtI~l~~~~g~ 498 (517)
+.||+++|++|.|+|.|==..|.
T Consensus 694 YHVPr~~Lk~g~N~lViFEe~gg 716 (840)
T PLN03059 694 YHVPRSWLKPSGNLLIVFEEWGG 716 (840)
T ss_pred EeCcHHHhccCCceEEEEEecCC
Confidence 88999999999999877544443
No 53
>cd05469 Transthyretin_like Transthyretin_like. This domain is present in the transthyretin-like protein (TLP) family which includes transthyretin (TTR) and a transthyretin-related protein called 5-hydroxyisourate hydrolase (HIUase). TTR and HIUase are homotetrameric proteins with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits. TTR transports thyroid hormones and retinol in the blood serum of vertebrates while HIUase catalyzes the second step in a three-step ureide pathway. TTRs are highly conserved and found only in vertebrates while the HIUases are found in a wide range of bacterial, plant, fungal, slime mold and vertebrate organisms.
Probab=74.82 E-value=5.1 Score=35.92 Aligned_cols=49 Identities=18% Similarity=0.199 Sum_probs=34.8
Q ss_pred cccCceEEEecCCCCCCCccccccccceEEEeCCCcceEe----CcccCcceEEEEEE
Q 010135 234 ISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSI----KNIRTGNYNLYAWV 287 (517)
Q Consensus 234 ~pa~~a~V~L~~~~~~g~~~~~~~~yqywt~td~~G~Fti----~nVrpGtY~L~a~~ 287 (517)
+||.++.|.|......++|+. ---+.||+||+..- ..+.+|.|+|..-.
T Consensus 14 ~PAagv~V~L~~~~~~~~w~~-----l~~~~Tn~DGR~~~~l~~~~~~~G~Y~l~F~t 66 (113)
T cd05469 14 SPAANVAIKVFRKTADGSWEI-----FATGKTNEDGELHGLITEEEFXAGVYRVEFDT 66 (113)
T ss_pred ccCCCCEEEEEEecCCCceEE-----EEEEEECCCCCccCccccccccceEEEEEEeh
Confidence 999999999975321123432 33467999999852 45789999999864
No 54
>cd05821 TLP_Transthyretin Transthyretin (TTR) is a 55 kDa protein responsible for the transport of thyroid hormones and retinol in vertebrates. TTR distributes the two thyroid hormones T3 (3,5,3'-triiodo-L-thyronine) and T4 (Thyroxin, or 3,5,3',5'-tetraiodo-L-thyronine), as well as retinol (vitamin A) through the formation of a macromolecular complex that includes each of these as well as retinol-binding protein. Misfolded forms of TTR are implicated in the amyloid diseases familial amyloidotic polyneuropathy and senile systemic amyloidosis. TTR forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits, which differ in their ligand binding affinity. A negative cooperativity has been observed for the binding of T4 and other TTR ligands. A fraction of plasma TTR is carried in high density lipoproteins by bindi
Probab=72.22 E-value=8.8 Score=34.83 Aligned_cols=62 Identities=16% Similarity=0.112 Sum_probs=41.9
Q ss_pred CeEEEEEEEEec-CCCccccCceEEEecCCCCCCCccccccccceEEEeCCCcceE----eCcccCcceEEEEEE
Q 010135 218 RGCVSGRLLVQD-SNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFS----IKNIRTGNYNLYAWV 287 (517)
Q Consensus 218 RG~VsG~v~~~d-~~~~~pa~~a~V~L~~~~~~g~~~~~~~~yqywt~td~~G~Ft----i~nVrpGtY~L~a~~ 287 (517)
|-.|+=.|+... | +||.++.|.|......+.|+. .--+.||++|+.. -..+.+|.|+|..-.
T Consensus 6 ~~~ittHVLDt~~G---~PAaGV~V~L~~~~~~~~w~~-----l~~~~Tn~DGR~~~ll~~~~~~~G~Y~l~F~t 72 (121)
T cd05821 6 KCPLMVKVLDAVRG---SPAANVAVKVFKKTADGSWEP-----FASGKTTETGEIHGLTTDEQFTEGVYKVEFDT 72 (121)
T ss_pred CCCcEEEEEECCCC---ccCCCCEEEEEEecCCCceEE-----EEEEEECCCCCCCCccCccccCCeeEEEEEeh
Confidence 556676665433 5 999999999964321123432 3447799999875 235678999999864
No 55
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=69.61 E-value=23 Score=30.54 Aligned_cols=64 Identities=17% Similarity=0.315 Sum_probs=33.5
Q ss_pred eEEEEEEEEecCCCccccCceEEEecCCCCCCCccccccccceEEEeCCCcc--eEeCcccCcceEEEEEECc
Q 010135 219 GCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGC--FSIKNIRTGNYNLYAWVPG 289 (517)
Q Consensus 219 G~VsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~~~~~~~yqywt~td~~G~--Fti~nVrpGtY~L~a~~~G 289 (517)
-+++-+|+...| .|..+..|-+......+.... ... -+.||++|. +++..-++|+|++.|...|
T Consensus 25 ~tltatV~D~~g---npv~g~~V~f~~~~~~~~l~~--~~~--~~~Td~~G~a~~tltst~aG~~~VtA~~~~ 90 (100)
T PF02369_consen 25 NTLTATVTDANG---NPVPGQPVTFSSSSSGGTLSP--TNT--SATTDSNGIATVTLTSTKAGTYTVTATVDG 90 (100)
T ss_dssp EEEEEEEEETTS---EB-TS-EEEE--EESSSEES---CEE---EEE-TTSEEEEEEE-SS-EEEEEEEEETT
T ss_pred EEEEEEEEcCCC---CCCCCCEEEEEEcCCCcEEec--Ccc--ccEECCCEEEEEEEEecCceEEEEEEEECC
Confidence 344445554335 778888888721111111110 000 367999995 5667789999999999875
No 56
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=68.41 E-value=14 Score=35.83 Aligned_cols=63 Identities=14% Similarity=0.139 Sum_probs=43.3
Q ss_pred CeEEEEEEEEecCCCccccCceEEEecCCCCCCCccccc-----------cccce-EEEeCCCcceEeCcccCcceE
Q 010135 218 RGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTEC-----------KDYQF-WTTADEDGCFSIKNIRTGNYN 282 (517)
Q Consensus 218 RG~VsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~~~~~-----------~~yqy-wt~td~~G~Fti~nVrpGtY~ 282 (517)
.=.+.|+|...+ .++|..+|.|=+-.....|...... ..+-. +..||++|.|+|.-|.||-|.
T Consensus 26 pl~l~g~V~D~~--~c~Pv~~a~VdiWh~da~G~Ys~~~~~~~~~~~~~~~~flRG~~~TD~~G~~~F~TI~PG~Y~ 100 (188)
T cd03457 26 PLTLDLQVVDVA--TCCPPPNAAVDIWHCDATGVYSGYSAGGGGGEDTDDETFLRGVQPTDADGVVTFTTIFPGWYP 100 (188)
T ss_pred EEEEEEEEEeCC--CCccCCCeEEEEecCCCCCCCCCccCCccccccccCCCcCEEEEEECCCccEEEEEECCCCCC
Confidence 357899988543 3489999999887655555333211 11111 356899999999999999985
No 57
>COG2351 Transthyretin-like protein [General function prediction only]
Probab=67.14 E-value=18 Score=32.72 Aligned_cols=66 Identities=24% Similarity=0.313 Sum_probs=43.8
Q ss_pred eEEEEEEEEecCCCccccCceEEEecCCCCCCCccccccccceEEEeCCCcceE-----eCcccCcceEEEEEECceeee
Q 010135 219 GCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFS-----IKNIRTGNYNLYAWVPGFVGD 293 (517)
Q Consensus 219 G~VsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~~~~~~~yqywt~td~~G~Ft-----i~nVrpGtY~L~a~~~G~~G~ 293 (517)
|.++=.|+... .-+||.++.|.|..-.+. .|+ ----+.||+||+-. -+.+++|.|+|..-+ ||
T Consensus 9 G~LTTHVLDta--~GkPAagv~V~L~rl~~~-~~~-----~l~t~~Tn~DGR~d~pll~g~~~~~G~Y~l~F~~----gd 76 (124)
T COG2351 9 GRLTTHVLDTA--SGKPAAGVKVELYRLEGN-QWE-----LLKTVVTNADGRIDAPLLAGETLATGIYELVFHT----GD 76 (124)
T ss_pred ceeeeeeeecc--cCCcCCCCEEEEEEecCC-cce-----eeeEEEecCCCcccccccCccccccceEEEEEEc----ch
Confidence 45555555433 239999999999744322 232 23346789999876 356789999999864 66
Q ss_pred eee
Q 010135 294 YRS 296 (517)
Q Consensus 294 ~~~ 296 (517)
|..
T Consensus 77 Yf~ 79 (124)
T COG2351 77 YFK 79 (124)
T ss_pred hhh
Confidence 654
No 58
>cd05822 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU). HIUase has high sequence similarity with transthyretins and is a member of the transthyretin-like protein (TLP) family. HIUase is distinguished from transthyretins by a conserved signature motif at its C-terminus that forms part of the active site. In HIUase, this motif is YRGS, while transthyretins have a conserved TAVV sequence in the same location. Most HIUases are cytosolic but in plants and slime molds, they are peroxisomal based on the presence of N-terminal periplasmic localization sequences. HIUase forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located betw
Probab=64.77 E-value=11 Score=33.64 Aligned_cols=48 Identities=21% Similarity=0.218 Sum_probs=34.9
Q ss_pred cccCceEEEecCCCCCCCccccccccceEEEeCCCcceEe-----CcccCcceEEEEEE
Q 010135 234 ISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSI-----KNIRTGNYNLYAWV 287 (517)
Q Consensus 234 ~pa~~a~V~L~~~~~~g~~~~~~~~yqywt~td~~G~Fti-----~nVrpGtY~L~a~~ 287 (517)
+||.++-|-|....+. .|+ .---+.||++|+..- ..+++|+|+|..-.
T Consensus 14 ~PAagv~V~L~~~~~~-~~~-----~i~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~ 66 (112)
T cd05822 14 KPAAGVAVTLYRLDGN-GWT-----LLATGVTNADGRCDDLLPPGAQLAAGTYKLTFDT 66 (112)
T ss_pred cccCCCEEEEEEecCC-CeE-----EEEEEEECCCCCccCcccccccCCCeeEEEEEEh
Confidence 9999999999753221 232 233477999998753 46889999999875
No 59
>PF09912 DUF2141: Uncharacterized protein conserved in bacteria (DUF2141); InterPro: IPR018673 This family of conserved hypothetical proteins has no known function.
Probab=61.39 E-value=18 Score=31.99 Aligned_cols=48 Identities=10% Similarity=0.172 Sum_probs=30.6
Q ss_pred ceEEEecCCCCCCCccccccccceEEEeC---CCcceEeCcccCcceEEEEEEC
Q 010135 238 GAYVGLAPPGDVGSWQTECKDYQFWTTAD---EDGCFSIKNIRTGNYNLYAWVP 288 (517)
Q Consensus 238 ~a~V~L~~~~~~g~~~~~~~~yqywt~td---~~G~Fti~nVrpGtY~L~a~~~ 288 (517)
.+.|.|....+ +|. ....+-....+. ..-.++|++++||+|.+.++.|
T Consensus 12 ~v~v~ly~~~~--~f~-~~~~~~~~~~~~~~~~~~~~~f~~lp~G~YAi~v~hD 62 (112)
T PF09912_consen 12 QVRVALYNSAE--GFE-NKKKALKRVKVPAKGGTVTITFEDLPPGTYAIAVFHD 62 (112)
T ss_pred EEEEEEEcChh--chh-hcccceeEEEEEcCCCcEEEEECCCCCccEEEEEEEe
Confidence 36677776533 352 223333333332 3448999999999999999875
No 60
>PF01190 Pollen_Ole_e_I: Pollen proteins Ole e I like; InterPro: IPR006041 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ole e 1. A number of plant pollen proteins, whose biological function is not yet known, are structurally related []. These proteins are most probably secreted and consist of about 145 residues. There are six cysteines which are conserved in the sequence of these proteins. They seem to be involved in disulphide bonds.
Probab=59.24 E-value=18 Score=30.90 Aligned_cols=37 Identities=24% Similarity=0.242 Sum_probs=25.0
Q ss_pred ccccCceEEEecCCCCCCCccccccccceEEEeCCCcceEeC
Q 010135 233 VISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIK 274 (517)
Q Consensus 233 ~~pa~~a~V~L~~~~~~g~~~~~~~~yqywt~td~~G~Fti~ 274 (517)
..|..+|.|.|.=.+.. ........+.||++|.|.|.
T Consensus 18 ~~~l~GA~V~v~C~~~~-----~~~~~~~~~~Td~~G~F~i~ 54 (97)
T PF01190_consen 18 AKPLPGAKVSVECKDGN-----GGVVFSAEAKTDENGYFSIE 54 (97)
T ss_pred CccCCCCEEEEECCCCC-----CCcEEEEEEEeCCCCEEEEE
Confidence 36788899998632111 00235666889999999996
No 61
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=58.80 E-value=13 Score=45.10 Aligned_cols=68 Identities=16% Similarity=0.174 Sum_probs=46.0
Q ss_pred cEEEEEEeCCCCCCCcEEEEEEEeccCCCeEEEEEcCCCCCCCcccccccCCCCceecceeeeeeEEEEEEeeCCCeeee
Q 010135 407 TWQIKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEG 486 (517)
Q Consensus 407 ~w~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vN~~~~~~~~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G 486 (517)
-.+=.|.+++........|++.- ......|.|||+.++ .. .|-+..++|+|.. .|+.|
T Consensus 112 ~Yrr~F~lp~~~~gkrv~L~FeG---V~s~a~VwvNG~~VG----------~~--------~g~~~pfefDIT~-~l~~G 169 (1021)
T PRK10340 112 AYQRTFTLSDGWQGKQTIIKFDG---VETYFEVYVNGQYVG----------FS--------KGSRLTAEFDISA-MVKTG 169 (1021)
T ss_pred EEEEEEEeCcccccCcEEEEECc---cceEEEEEECCEEec----------cc--------cCCCccEEEEcch-hhCCC
Confidence 34455888765433334455542 356789999998663 11 1446778999987 67899
Q ss_pred ecEEEEEeec
Q 010135 487 ENTIFLKQPR 496 (517)
Q Consensus 487 ~NtI~l~~~~ 496 (517)
+|+|.+.|.+
T Consensus 170 ~N~LaV~V~~ 179 (1021)
T PRK10340 170 DNLLCVRVMQ 179 (1021)
T ss_pred ccEEEEEEEe
Confidence 9999999853
No 62
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=58.46 E-value=21 Score=29.55 Aligned_cols=48 Identities=23% Similarity=0.221 Sum_probs=29.7
Q ss_pred EEEEEEecCCCccccCceEEEecCCCCCCCccccccccceEEEeCCCcceEeCcccC
Q 010135 222 SGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRT 278 (517)
Q Consensus 222 sG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~~~~~~~yqywt~td~~G~Fti~nVrp 278 (517)
+|+|.=.. +|+.++.|-|.+... .....--=-+.||++|+|+|..-..
T Consensus 1 ~G~L~C~~----~P~~~~~V~L~e~d~-----~~~Ddll~~~~Td~~G~F~l~G~~~ 48 (80)
T PF01060_consen 1 KGQLMCGG----KPAKNVKVKLWEDDY-----FDPDDLLDETKTDSDGNFELSGSTN 48 (80)
T ss_pred CeEEEeCC----ccCCCCEEEEEECCC-----CCCCceeEEEEECCCceEEEEEEcc
Confidence 46666533 799999999964321 0112222237789999999875433
No 63
>smart00095 TR_THY Transthyretin.
Probab=54.60 E-value=21 Score=32.48 Aligned_cols=66 Identities=15% Similarity=0.129 Sum_probs=41.5
Q ss_pred eEEEEEEEEec-CCCccccCceEEEecCCCCCCCccccccccceEEEeCCCcceE----eCcccCcceEEEEEECceeee
Q 010135 219 GCVSGRLLVQD-SNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFS----IKNIRTGNYNLYAWVPGFVGD 293 (517)
Q Consensus 219 G~VsG~v~~~d-~~~~~pa~~a~V~L~~~~~~g~~~~~~~~yqywt~td~~G~Ft----i~nVrpGtY~L~a~~~G~~G~ 293 (517)
-.|+=.|+... | +||.++.|.|......+.|+. ---..||.+|+.. -..+.+|.|+|..-. |+
T Consensus 4 ~plTtHVLDt~~G---~PAagv~V~L~~~~~~~~w~~-----la~~~Tn~DGR~~~ll~~~~~~~G~Y~l~F~t----g~ 71 (121)
T smart00095 4 CPLMVKVLDAVRG---SPAVNVAVKVFKKTEEGTWEP-----FASGKTNESGEIHELTTDEKFVEGLYKVEFDT----KS 71 (121)
T ss_pred CCeEEEEEECCCC---ccCCCCEEEEEEeCCCCceEE-----EEEEecCCCccccCccCcccccceEEEEEEeh----hH
Confidence 34555555332 5 999999999964211122331 2236789999874 145779999999864 55
Q ss_pred eee
Q 010135 294 YRS 296 (517)
Q Consensus 294 ~~~ 296 (517)
|..
T Consensus 72 Yf~ 74 (121)
T smart00095 72 YWK 74 (121)
T ss_pred hHh
Confidence 543
No 64
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=53.19 E-value=27 Score=26.80 Aligned_cols=28 Identities=29% Similarity=0.503 Sum_probs=20.5
Q ss_pred ceEEEeCCCcceEe--CcccCcceEEEEEE
Q 010135 260 QFWTTADEDGCFSI--KNIRTGNYNLYAWV 287 (517)
Q Consensus 260 qywt~td~~G~Fti--~nVrpGtY~L~a~~ 287 (517)
.|.+.+|++|.+++ +....|+|++.+.+
T Consensus 3 ~~~~t~~~~G~Ws~t~~~~~dG~y~itv~a 32 (54)
T PF13754_consen 3 TYTTTVDSDGNWSFTVPALADGTYTITVTA 32 (54)
T ss_pred EEEEEECCCCcEEEeCCCCCCccEEEEEEE
Confidence 56777889998766 44456888888765
No 65
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=51.48 E-value=12 Score=35.51 Aligned_cols=62 Identities=18% Similarity=0.187 Sum_probs=31.4
Q ss_pred cEEEEEEEeccCCCeEEEEEcCCCCCCCcccccccCCCCceecceeeeeeEEEEEEeeCCCeeeeecEEEEEeecC
Q 010135 422 SYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLKQPRC 497 (517)
Q Consensus 422 ~~tLriala~a~~~~~~V~vN~~~~~~~~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~NtI~l~~~~g 497 (517)
.++|.|+ +.+..++.|||+.+.. ..+.-...-++. +-+|. +++| +.+|++|+|+|-+.+..|
T Consensus 5 ~A~l~is----a~g~Y~l~vNG~~V~~-----~~l~P~~t~y~~--~~~Y~--tyDV-t~~L~~G~N~iav~lg~g 66 (172)
T PF08531_consen 5 SARLYIS----ALGRYELYVNGERVGD-----GPLAPGWTDYDK--RVYYQ--TYDV-TPYLRPGENVIAVWLGNG 66 (172)
T ss_dssp --EEEEE----EESEEEEEETTEEEEE-----E--------BTT--EEEEE--EEE--TTT--TTEEEEEEEEEE-
T ss_pred EEEEEEE----eCeeEEEEECCEEeeC-----CccccccccCCC--ceEEE--EEeC-hHHhCCCCCEEEEEEeCC
Confidence 3555553 4579999999997642 111000000111 12344 4455 478999999999998654
No 66
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=48.52 E-value=22 Score=31.42 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=29.6
Q ss_pred CCcceEeCcccCcceEEEEEECceee-eeeeeeEEEEeCCceeee
Q 010135 267 EDGCFSIKNIRTGNYNLYAWVPGFVG-DYRSDALVTITSGSNIKM 310 (517)
Q Consensus 267 ~~G~Fti~nVrpGtY~L~a~~~G~~G-~~~~~~~VtV~aG~t~~l 310 (517)
..|.|..-.|+||+|++.+-. ++.+ .-..+.+|+|.+|++--+
T Consensus 56 ~~g~y~~~~v~pG~h~i~~~~-~~~~~~~~~~l~~~~~~G~~yy~ 99 (117)
T PF11008_consen 56 KNGGYFYVEVPPGKHTISAKS-EFSSSPGANSLDVTVEAGKTYYV 99 (117)
T ss_pred CCCeEEEEEECCCcEEEEEec-CccCCCCccEEEEEEcCCCEEEE
Confidence 467777778999999999953 2211 011455799999998654
No 67
>PF03944 Endotoxin_C: delta endotoxin; InterPro: IPR005638 This family contains insecticidal toxins produced by Bacillus species of bacteria. During spore formation the bacteria produce crystals of this protein. When an insect ingests these proteins, they are activated by proteolytic cleavage. The N terminus is cleaved in all of the proteins and a C-terminal extension is cleaved in some members. Once activated, the endotoxin binds to the gut epithelium and causes cell lysis by the formation of cation-selective channels, which leads to death. The activated region of the delta toxin is composed of three distinct structural domains: an N-terminal helical bundle domain (IPR005639 from INTERPRO) involved in membrane insertion and pore formation; a beta-sheet central domain (IPR001178 from INTERPRO) involved in receptor binding; and a C-terminal beta-sandwich domain that interacts with the N-terminal domain to form a channel [, ]. This entry represents the conserved C-terminal domain.; PDB: 1DLC_A 1JI6_A 1W99_A 1CIY_A 1I5P_A 2C9K_A 3EB7_A.
Probab=47.35 E-value=56 Score=29.98 Aligned_cols=95 Identities=18% Similarity=0.296 Sum_probs=47.7
Q ss_pred EEEEEeCCCCCCCcEEEEEEEeccCCCeEEEEEcCCCCC--CCcccccccCCCCceecceeeeeeEEEEE-EeeCC-Cee
Q 010135 409 QIKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNAN--RPLFTTGLIGRDNAIARHGIHGLYLLYHV-NIPGT-RFI 484 (517)
Q Consensus 409 ~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vN~~~~~--~~~~~~~~~~~~~~i~R~~~~G~~~~~~~-~ipa~-~L~ 484 (517)
+|++..+. .....|.+||-.|+...+.+.|.+++.... ..++.+..- ... ..++|..|.+ +++.. .+.
T Consensus 41 ~~~v~~~~-~~~~~YrIRiRYAs~~~~~~~i~~~~~~~~~~~~~~~T~~~--~~~-----~~~~y~~F~y~~~~~~~~~~ 112 (143)
T PF03944_consen 41 KIRVTINN-SSSQKYRIRIRYASNSNGTLSISINNSSGNLSFNFPSTMSN--GDN-----LTLNYESFQYVEFPTPFTFS 112 (143)
T ss_dssp EEEEEESS-SSTEEEEEEEEEEESS-EEEEEEETTEEEECEEEE--SSST--TGG-----CCETGGG-EEEEESSEEEES
T ss_pred EEEEEecC-CCCceEEEEEEEEECCCcEEEEEECCccceeeeeccccccC--CCc-----cccccceeEeeecCceEEec
Confidence 44454332 335679999999988889999999886431 011212111 111 3332222221 22221 122
Q ss_pred eee-cEEEEEeecCCCCCceEEEEEEEEe
Q 010135 485 EGE-NTIFLKQPRCTSPFQGIMYDYIRLE 512 (517)
Q Consensus 485 ~G~-NtI~l~~~~g~s~~~~vmyD~I~Le 512 (517)
.+. .+|.|.+...++. ..|.-|-|++.
T Consensus 113 ~~~~~~~~i~i~~~~~~-~~v~IDkIEFI 140 (143)
T PF03944_consen 113 SNQSITITISIQNISSN-GNVYIDKIEFI 140 (143)
T ss_dssp TSEEEEEEEEEESSTTT-S-EEEEEEEEE
T ss_pred CCCceEEEEEEEecCCC-CeEEEEeEEEE
Confidence 222 5677665433222 47899999875
No 68
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=41.72 E-value=42 Score=40.78 Aligned_cols=68 Identities=13% Similarity=0.136 Sum_probs=44.8
Q ss_pred cEEEEEEeCCCCCCC-cEEEEEEEeccCCCeEEEEEcCCCCCCCcccccccCCCCceecceeeeeeEEEEEEeeCCCeee
Q 010135 407 TWQIKFKLDHVDRNS-SYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIE 485 (517)
Q Consensus 407 ~w~I~F~L~~~~~~~-~~tLriala~a~~~~~~V~vN~~~~~~~~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~ 485 (517)
-.+=.|.+++..... ...|++. +......|.|||+.++ --.|-+.-++|+|. ..|+.
T Consensus 123 wYrr~F~vp~~w~~~~rv~L~Fe---GV~~~a~VwvNG~~VG------------------~~~g~~~pfefDIT-~~l~~ 180 (1027)
T PRK09525 123 CYSLTFTVDESWLQSGQTRIIFD---GVNSAFHLWCNGRWVG------------------YSQDSRLPAEFDLS-PFLRA 180 (1027)
T ss_pred EEEEEEEeChhhcCCCeEEEEEC---eeccEEEEEECCEEEE------------------eecCCCceEEEECh-hhhcC
Confidence 334458886643222 3444443 3467889999998552 01244677899996 67789
Q ss_pred eecEEEEEeec
Q 010135 486 GENTIFLKQPR 496 (517)
Q Consensus 486 G~NtI~l~~~~ 496 (517)
|+|+|.+.|.+
T Consensus 181 G~N~L~V~V~~ 191 (1027)
T PRK09525 181 GENRLAVMVLR 191 (1027)
T ss_pred CccEEEEEEEe
Confidence 99999999854
No 69
>PF07550 DUF1533: Protein of unknown function (DUF1533); InterPro: IPR011432 This domain is found duplicated in proteins of unknown function. The proteins typically also contain leucine-rich repeats.
Probab=40.77 E-value=22 Score=28.33 Aligned_cols=19 Identities=42% Similarity=0.726 Sum_probs=17.0
Q ss_pred EEeeCCCe-eeeecEEEEEe
Q 010135 476 VNIPGTRF-IEGENTIFLKQ 494 (517)
Q Consensus 476 ~~ipa~~L-~~G~NtI~l~~ 494 (517)
+.|.+++| ++|+|+|+|.-
T Consensus 36 l~i~~~~f~~~G~~~I~I~A 55 (65)
T PF07550_consen 36 LKIKASAFNKDGENTIVIKA 55 (65)
T ss_pred EEEcHHHcCcCCceEEEEEe
Confidence 88999999 78999999983
No 70
>PRK10150 beta-D-glucuronidase; Provisional
Probab=40.06 E-value=57 Score=36.98 Aligned_cols=65 Identities=17% Similarity=0.117 Sum_probs=41.7
Q ss_pred EEEEEeCCCCCCCcEEEEEEEeccCCCeEEEEEcCCCCCCCcccccccCCCCceecceeeeeeEEEEEEeeCCCeeeeec
Q 010135 409 QIKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGEN 488 (517)
Q Consensus 409 ~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vN~~~~~~~~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~N 488 (517)
+=.|.|++........|++. +.....+|.|||+.++ .-.|-+..++|+|.. .|+.|+|
T Consensus 70 rr~f~lp~~~~gk~v~L~Fe---gv~~~a~V~lNG~~vg------------------~~~~~~~~f~~DIT~-~l~~G~~ 127 (604)
T PRK10150 70 QREVFIPKGWAGQRIVLRFG---SVTHYAKVWVNGQEVM------------------EHKGGYTPFEADITP-YVYAGKS 127 (604)
T ss_pred EEEEECCcccCCCEEEEEEC---cccceEEEEECCEEee------------------eEcCCccceEEeCch-hccCCCc
Confidence 44588865432233444443 2345678999998653 112456778999975 5778865
Q ss_pred -EEEEEee
Q 010135 489 -TIFLKQP 495 (517)
Q Consensus 489 -tI~l~~~ 495 (517)
+|.+.+.
T Consensus 128 n~L~V~v~ 135 (604)
T PRK10150 128 VRITVCVN 135 (604)
T ss_pred eEEEEEEe
Confidence 9999984
No 71
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=38.43 E-value=1.7e+02 Score=24.56 Aligned_cols=39 Identities=18% Similarity=0.332 Sum_probs=29.1
Q ss_pred ceEeCcccCcc---eEEEEEE--CceeeeeeeeeEEEEeCCceeee
Q 010135 270 CFSIKNIRTGN---YNLYAWV--PGFVGDYRSDALVTITSGSNIKM 310 (517)
Q Consensus 270 ~Fti~nVrpGt---Y~L~a~~--~G~~G~~~~~~~VtV~aG~t~~l 310 (517)
.|.-+++.+|. |++.|-. +|- ....+.+|.|.||.+.++
T Consensus 30 ~F~T~~L~~G~~y~Y~v~a~~~~dG~--~~t~~~~V~vrAGd~~~v 73 (75)
T TIGR03000 30 TFTTPPLEAGKEYEYTVTAEYDRDGR--ILTRTRTVVVRAGDTVTV 73 (75)
T ss_pred EEECCCCCCCCEEEEEEEEEEecCCc--EEEEEEEEEEcCCceEEe
Confidence 69999999997 6666642 552 245677899999998776
No 72
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=34.18 E-value=45 Score=30.58 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=19.9
Q ss_pred cccCcceEEEEEECceeeeeeeeeEEEEeC
Q 010135 275 NIRTGNYNLYAWVPGFVGDYRSDALVTITS 304 (517)
Q Consensus 275 nVrpGtY~L~a~~~G~~G~~~~~~~VtV~a 304 (517)
.++||+|+|.+-+..-.+.-..+.+++|++
T Consensus 102 ~lk~G~Y~l~~~~~~~~~~W~f~k~F~It~ 131 (140)
T PF11797_consen 102 KLKPGKYTLKITAKSGKKTWTFTKDFTITA 131 (140)
T ss_pred CccCCEEEEEEEEEcCCcEEEEEEEEEECH
Confidence 699999999987643223333455677764
No 73
>PRK13211 N-acetylglucosamine-binding protein A; Reviewed
Probab=33.54 E-value=1.9e+02 Score=32.33 Aligned_cols=66 Identities=9% Similarity=0.091 Sum_probs=40.4
Q ss_pred CCCCCCCCCeEEEEEEEEecCCCccccCceEEEecCCCCCCCccccccccceEEEeCCCcceEeC--cccCcceEEEEEE
Q 010135 210 EDFQKSEERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIK--NIRTGNYNLYAWV 287 (517)
Q Consensus 210 ~~y~~~~~RG~VsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~~~~~~~yqywt~td~~G~Fti~--nVrpGtY~L~a~~ 287 (517)
++|.-..+..+|.=+|... ....+.+-|.+... +.++++--+..|..-.|+|. ++++|.|+|.+.+
T Consensus 320 ~eY~I~dG~~~i~ftv~a~------g~~~vta~V~d~~g------~~~~~~~~~v~d~s~~vtL~Ls~~~AG~y~Lvv~~ 387 (478)
T PRK13211 320 KEYKIGDGAATLDFTVTAT------GDMNVEATVYNHDG------EALGSKSQTVNDGSQSVSLDLSKLKAGHHMLVVKA 387 (478)
T ss_pred ceeEEcCCcEEEEEEEEec------cceEEEEEEEcCCC------CeeeeeeEEecCCceeEEEecccCCCceEEEEEEE
Confidence 6777766666666655542 24566777764321 12333333444555567655 9999999999864
No 74
>PF12866 DUF3823: Protein of unknown function (DUF3823); InterPro: IPR024278 This is a family of uncharacterised proteins from Bacteroidetes. These proteins have characteristic DN and DR sequence-motifs but their function is not known.; PDB: 3HN5_B 4EIU_A.
Probab=31.87 E-value=1.9e+02 Score=28.84 Aligned_cols=61 Identities=18% Similarity=0.324 Sum_probs=38.2
Q ss_pred CeEEEEEEEEecCCCc--cccCceEEEecCCCCCCCccccccccceEEEeCCCcceEeCcccCcceEEEE
Q 010135 218 RGCVSGRLLVQDSNDV--ISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYA 285 (517)
Q Consensus 218 RG~VsG~v~~~d~~~~--~pa~~a~V~L~~~~~~g~~~~~~~~yqywt~td~~G~Fti~nVrpGtY~L~a 285 (517)
-++++|+|....-..+ ....++.|-|.+.| |.. .+.|.+ ....+|.|.-..|=+|+|+|..
T Consensus 21 ~s~l~G~iiD~~tgE~i~~~~~gv~i~l~e~g----y~~--~~~~~~-~v~qDGtf~n~~lF~G~Yki~~ 83 (222)
T PF12866_consen 21 DSTLTGRIIDVYTGEPIQTDIGGVRIQLYELG----YGD--NTPQDV-YVKQDGTFRNTKLFDGDYKIVP 83 (222)
T ss_dssp -EEEEEEEEECCTTEE----STSSEEEEECS-----CCG----SEEE-EB-TTSEEEEEEE-SEEEEEEE
T ss_pred CceEEEEEEEeecCCeeeecCCceEEEEEecc----ccc--CCCcce-EEccCCceeeeeEeccceEEEE
Confidence 5899999965331111 12247888887663 552 244444 3778999988899999999998
No 75
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=29.92 E-value=55 Score=27.78 Aligned_cols=48 Identities=31% Similarity=0.429 Sum_probs=29.1
Q ss_pred EEEEEEecCCCccccCceEEEecCCCCCCCccccccccceEEEeC-CCcceEeCcccCc
Q 010135 222 SGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTAD-EDGCFSIKNIRTG 279 (517)
Q Consensus 222 sG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~~~~~~~yqywt~td-~~G~Fti~nVrpG 279 (517)
+|+++..++ .....++.|.+... .....|.|.... .+|.|.|.++..|
T Consensus 24 sg~~L~v~~--~~~~~g~~v~~~~~--------~~~~~Q~W~i~~~~~g~y~I~n~~s~ 72 (105)
T PF14200_consen 24 SGKYLDVAG--GSTANGTNVQQWTC--------NGNDNQQWKIEPVGDGYYRIRNKNSG 72 (105)
T ss_dssp TTEEEEEGC--TTCSTTEBEEEEES--------SSSGGGEEEEEESTTSEEEEEETSTT
T ss_pred CCCEEEeCC--CCcCCCcEEEEecC--------CCCcCcEEEEEEecCCeEEEEECCCC
Confidence 455555442 12345666666432 236778886664 6688999888665
No 76
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=29.64 E-value=2.6e+02 Score=23.36 Aligned_cols=65 Identities=14% Similarity=0.136 Sum_probs=36.4
Q ss_pred CeEEEEEEEEecCCCccccCceEEEecCCCCCCCccccccccceEEEeCCCcc--eEeCcccCcceEEEEEECce
Q 010135 218 RGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGC--FSIKNIRTGNYNLYAWVPGF 290 (517)
Q Consensus 218 RG~VsG~v~~~d~~~~~pa~~a~V~L~~~~~~g~~~~~~~~yqywt~td~~G~--Fti~nVrpGtY~L~a~~~G~ 290 (517)
...|+=+|...+| .|..+..|.+.-.+.. .....+ -...||++|. ..+..-++|++++++...|.
T Consensus 19 ~~~i~v~v~D~~G---npv~~~~V~f~~~~~~-~~~~~~----~~~~Td~~G~a~~~l~~~~~G~~~vta~~~~~ 85 (92)
T smart00634 19 AITLTATVTDANG---NPVAGQEVTFTTPSGG-ALTLSK----GTATTDANGIATVTLTSTTAGVYTVTASLENG 85 (92)
T ss_pred cEEEEEEEECCCC---CCcCCCEEEEEECCCc-eeeccC----CeeeeCCCCEEEEEEECCCCcEEEEEEEECCC
Confidence 3566666665545 4555555655533221 111111 1236888996 44556678999999887664
No 77
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=27.96 E-value=1.6e+02 Score=24.99 Aligned_cols=39 Identities=21% Similarity=0.298 Sum_probs=24.7
Q ss_pred CceEEEecCCCCCCCccccccccceEEEeCCCcceEeCccc-----CcceEEEEEE
Q 010135 237 NGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIR-----TGNYNLYAWV 287 (517)
Q Consensus 237 ~~a~V~L~~~~~~g~~~~~~~~yqywt~td~~G~Fti~nVr-----pGtY~L~a~~ 287 (517)
.++.|.|+.. +--|....-++|+++|+ +. +|+|+|++-.
T Consensus 26 ~gs~ValS~d-----------g~l~G~ai~~sG~ati~-l~~~it~~~~~tlTit~ 69 (81)
T PF03785_consen 26 PGSYVALSQD-----------GDLYGKAIVNSGNATIN-LTNPITDEGTLTLTITA 69 (81)
T ss_dssp TT-EEEEEET-----------TEEEEEEE-BTTEEEEE--SS--TT-SEEEEEEE-
T ss_pred CCcEEEEecC-----------CEEEEEEEecCceEEEE-CCcccCCCceEEEEEEE
Confidence 4677888754 44777555449999985 55 6889988864
No 78
>PF04571 Lipin_N: lipin, N-terminal conserved region; InterPro: IPR007651 Mutations in the lipin gene lead to fatty liver dystrophy in mice. The protein has been shown to be phosphorylated by the TOR Ser/Thr protein kinases in response to insulin stimulation. This entry represents a conserved domain found at the N terminus of the member proteins [, ].
Probab=26.10 E-value=94 Score=27.84 Aligned_cols=38 Identities=13% Similarity=0.315 Sum_probs=28.2
Q ss_pred ecCCcccCCccEEEEEEeCCCCCCCcEEEEEEEeccCCCeEEEEEcCCCC
Q 010135 397 EMDNKTYQGTTWQIKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNA 446 (517)
Q Consensus 397 ~~~~~~~~~~~w~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vN~~~~ 446 (517)
+.++|+++.++|.++|-= | .+..+....+.|.|||+.+
T Consensus 34 ~q~DGs~~sSPFhVRFGk----------~--~vl~~~ek~V~I~VNG~~~ 71 (110)
T PF04571_consen 34 EQPDGSLKSSPFHVRFGK----------L--GVLRPREKVVDIEVNGKPV 71 (110)
T ss_pred ecCCCCEecCccEEEEcc----------e--eeecccCcEEEEEECCEEc
Confidence 358899999999999971 1 3334456678999999855
No 79
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=23.69 E-value=1.4e+02 Score=21.85 Aligned_cols=11 Identities=27% Similarity=0.540 Sum_probs=9.8
Q ss_pred cCcceEEEEEE
Q 010135 277 RTGNYNLYAWV 287 (517)
Q Consensus 277 rpGtY~L~a~~ 287 (517)
+||.|+|.+-+
T Consensus 11 ~PG~Y~l~~~a 21 (41)
T TIGR03769 11 KPGTYTLTVQA 21 (41)
T ss_pred CCeEEEEEEEE
Confidence 89999999875
No 80
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=23.01 E-value=1.3e+02 Score=34.72 Aligned_cols=71 Identities=20% Similarity=0.243 Sum_probs=45.7
Q ss_pred CCccEEEEEEeCCCCCCCcEEEEEEEeccCCCeEEEEEcCCCCCCCcccccccCCCCceecceeeeeeEEEEEEeeCCCe
Q 010135 404 QGTTWQIKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRF 483 (517)
Q Consensus 404 ~~~~w~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vN~~~~~~~~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L 483 (517)
+|-+|-=.|+.++... . ++|-....+.=+|.|||+++++ -+.+. |. ..++-||+++|
T Consensus 556 ~P~~w~k~f~~p~g~~--~----t~Ldm~g~GKG~vwVNG~niGR-YW~~~--------------G~--Q~~yhvPr~~L 612 (649)
T KOG0496|consen 556 QPLTWYKTFDIPSGSE--P----TALDMNGWGKGQVWVNGQNIGR-YWPSF--------------GP--QRTYHVPRSWL 612 (649)
T ss_pred CCeEEEEEecCCCCCC--C----eEEecCCCcceEEEECCccccc-ccCCC--------------CC--ceEEECcHHHh
Confidence 4566666676654331 1 1222234577789999998873 22111 43 56788999999
Q ss_pred eeeecEEEEEeecC
Q 010135 484 IEGENTIFLKQPRC 497 (517)
Q Consensus 484 ~~G~NtI~l~~~~g 497 (517)
+.+.|.|.+---.+
T Consensus 613 k~~~N~lvvfEee~ 626 (649)
T KOG0496|consen 613 KPSGNLLVVFEEEG 626 (649)
T ss_pred CcCCceEEEEEecc
Confidence 99999988765555
No 81
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=21.82 E-value=1.4e+02 Score=26.03 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=25.9
Q ss_pred cccCcceEEEEEECceeee---eeeeeEEEEeCCceeee
Q 010135 275 NIRTGNYNLYAWVPGFVGD---YRSDALVTITSGSNIKM 310 (517)
Q Consensus 275 nVrpGtY~L~a~~~G~~G~---~~~~~~VtV~aG~t~~l 310 (517)
.|.||+|++.+...|-... .....+|++.+|+.-++
T Consensus 39 ~v~~G~~~i~v~~~g~~~~~~~~l~~~~i~l~~g~~yTl 77 (122)
T PF14344_consen 39 PVPPGTYTIEVTPAGTTPDVSTPLLSTTITLEAGKSYTL 77 (122)
T ss_pred EECCceEEEEEEECCCCCccceEEEeccEEEcCCCEEEE
Confidence 4789999999998764321 23455799999987664
No 82
>PF08481 GBS_Bsp-like: GBS Bsp-like repeat; InterPro: IPR013688 This repeat is found in a number of Streptococcus proteins including some hypothetical proteins and Bsp. Bsp is a protein of group B Streptococcus (GBS) which might control cell morphology [].
Probab=21.09 E-value=5.1e+02 Score=22.14 Aligned_cols=36 Identities=33% Similarity=0.729 Sum_probs=22.5
Q ss_pred ccccc-cccceEEEe--CCCcceEeC------cccCcceEEEEEE
Q 010135 252 WQTEC-KDYQFWTTA--DEDGCFSIK------NIRTGNYNLYAWV 287 (517)
Q Consensus 252 ~~~~~-~~yqywt~t--d~~G~Fti~------nVrpGtY~L~a~~ 287 (517)
|..++ ..-..|-.+ .++|.|++. +-..|+|.+.+|.
T Consensus 34 WSe~nGQdDL~WY~a~k~~dg~y~~~i~~~nH~~~~G~Y~vhvY~ 78 (95)
T PF08481_consen 34 WSEENGQDDLKWYTATKQSDGSYSVTIDLSNHKNETGTYHVHVYI 78 (95)
T ss_pred EcCCCCCCccEEEEeeecCCCcEEEEEeHHHCCCCccEEEEEEEE
Confidence 44433 444566444 578877764 1235999999993
No 83
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=21.08 E-value=2.9e+02 Score=25.26 Aligned_cols=55 Identities=22% Similarity=0.083 Sum_probs=34.7
Q ss_pred cccCceEEEecCCCCCCCccccccccceEEEeCCCcceEeCcccCcceEEEEEECc
Q 010135 234 ISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPG 289 (517)
Q Consensus 234 ~pa~~a~V~L~~~~~~g~~~~~~~~yqywt~td~~G~Fti~nVrpGtY~L~a~~~G 289 (517)
.|+.++.|.|-...|. +-|-...--.--.+||..|.+.-+++|-|+|.+.+-.+|
T Consensus 54 ~pi~~~ev~lmKa~ds-~~qPs~eig~~IGKTD~~Gki~Wk~~~kG~Y~v~l~n~e 108 (131)
T PF10794_consen 54 QPIKDFEVTLMKAADS-DPQPSKEIGISIGKTDEEGKIIWKNGRKGKYIVFLPNGE 108 (131)
T ss_pred CcccceEEEEEecccc-CCCCchhhceeecccCCCCcEEEecCCcceEEEEEcCCC
Confidence 7888887776431111 111111111223569999999999999999999876543
No 84
>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes. The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.
Probab=20.85 E-value=2.9e+02 Score=23.87 Aligned_cols=52 Identities=12% Similarity=0.334 Sum_probs=29.2
Q ss_pred cccCceEEEecCCCCCCCccccccccceEEEe--CCCc---ceEeCcccCcceEEEEEEC-c--eeeeee
Q 010135 234 ISANGAYVGLAPPGDVGSWQTECKDYQFWTTA--DEDG---CFSIKNIRTGNYNLYAWVP-G--FVGDYR 295 (517)
Q Consensus 234 ~pa~~a~V~L~~~~~~g~~~~~~~~yqywt~t--d~~G---~Fti~nVrpGtY~L~a~~~-G--~~G~~~ 295 (517)
.+...+.|.+.+. .|...+..+ ...+ .+.+++.++|.|.|.+... | +.|+|.
T Consensus 45 ~~~~~vtI~I~d~----------~G~vVy~~~~~~~~~~~~~I~L~~~~~G~Y~l~i~~~~g~~l~G~F~ 104 (106)
T PF11589_consen 45 SPIGDVTITIKDS----------TGNVVYSETVSNSAGQSITIDLNGLPSGEYTLEITNGNGTYLYGEFT 104 (106)
T ss_dssp S--SEEEEEEEET----------T--EEEEEEESCGGTTEEEEE-TTS-SEEEEEEEEECTC-EEEEEEE
T ss_pred CCCCCEEEEEEeC----------CCCEEEEEEccCCCCcEEEEEeCCCCCccEEEEEEeCCCCEEEEEEE
Confidence 4566777777642 333444443 2333 7889999999999998753 3 345544
Done!