Query 010136
Match_columns 517
No_of_seqs 398 out of 3755
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 21:28:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010136.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010136hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2227 Pre-initiation complex 100.0 4.5E-61 9.7E-66 470.5 35.1 449 46-516 65-524 (529)
2 PTZ00112 origin recognition co 100.0 9.2E-53 2E-57 440.3 40.6 373 108-516 739-1161(1164)
3 KOG1514 Origin recognition com 100.0 7.6E-52 1.6E-56 422.8 31.4 380 108-515 380-766 (767)
4 COG1474 CDC6 Cdc6-related prot 100.0 1.4E-50 3.1E-55 405.8 35.8 355 111-510 4-364 (366)
5 PRK00411 cdc6 cell division co 100.0 2.2E-48 4.7E-53 402.2 40.9 370 110-515 16-393 (394)
6 TIGR02928 orc1/cdc6 family rep 100.0 7.2E-48 1.6E-52 394.3 39.3 353 111-495 2-365 (365)
7 KOG0738 AAA+-type ATPase [Post 99.9 3.1E-26 6.8E-31 220.2 19.4 258 93-414 200-474 (491)
8 COG1222 RPT1 ATP-dependent 26S 99.9 6.2E-26 1.3E-30 217.0 15.9 225 121-412 148-395 (406)
9 KOG0730 AAA+-type ATPase [Post 99.9 3.4E-24 7.4E-29 219.5 16.9 259 79-413 408-678 (693)
10 TIGR00635 ruvB Holliday juncti 99.9 3.3E-23 7.1E-28 206.8 23.6 273 124-489 4-293 (305)
11 KOG2228 Origin recognition com 99.9 5.8E-22 1.3E-26 188.0 26.6 363 115-511 17-395 (408)
12 PRK00080 ruvB Holliday junctio 99.9 8.8E-22 1.9E-26 198.0 25.2 272 124-488 25-313 (328)
13 COG2255 RuvB Holliday junction 99.9 4.5E-21 9.8E-26 178.4 24.0 269 124-485 26-311 (332)
14 KOG0733 Nuclear AAA ATPase (VC 99.9 2E-22 4.2E-27 203.8 15.8 276 78-413 484-773 (802)
15 PF05496 RuvB_N: Holliday junc 99.9 1.5E-21 3.1E-26 178.7 13.0 192 122-361 22-229 (233)
16 COG1223 Predicted ATPase (AAA+ 99.9 3.9E-21 8.4E-26 176.0 15.3 224 120-411 117-357 (368)
17 COG2256 MGS1 ATPase related to 99.9 1.6E-20 3.5E-25 182.9 18.3 191 125-363 25-222 (436)
18 KOG0739 AAA+-type ATPase [Post 99.9 6E-21 1.3E-25 177.9 14.0 200 96-346 124-337 (439)
19 PRK03992 proteasome-activating 99.8 1.2E-20 2.7E-25 193.0 16.2 228 119-413 126-376 (389)
20 KOG0736 Peroxisome assembly fa 99.8 4.4E-20 9.6E-25 191.3 19.0 212 149-414 705-937 (953)
21 PRK14956 DNA polymerase III su 99.8 4.3E-20 9.3E-25 188.7 18.4 214 119-360 10-229 (484)
22 PRK07003 DNA polymerase III su 99.8 8.7E-20 1.9E-24 192.9 20.7 203 117-360 6-227 (830)
23 KOG0734 AAA+-type ATPase conta 99.8 1.8E-20 3.8E-25 186.9 13.1 221 123-410 303-542 (752)
24 KOG0733 Nuclear AAA ATPase (VC 99.8 4.1E-19 8.8E-24 180.0 23.1 319 124-485 190-552 (802)
25 PTZ00361 26 proteosome regulat 99.8 6.7E-20 1.5E-24 187.7 15.8 221 124-411 183-426 (438)
26 KOG0989 Replication factor C, 99.8 4.5E-20 9.7E-25 173.5 13.1 207 118-359 27-236 (346)
27 PRK14962 DNA polymerase III su 99.8 9.8E-19 2.1E-23 181.8 24.4 197 124-360 14-225 (472)
28 PLN03025 replication factor C 99.8 1.3E-18 2.8E-23 174.3 22.8 199 117-357 3-204 (319)
29 PTZ00454 26S protease regulato 99.8 3.3E-19 7.1E-24 181.6 17.3 225 122-412 143-389 (398)
30 KOG0728 26S proteasome regulat 99.8 2E-19 4.4E-24 163.9 12.7 221 125-411 148-390 (404)
31 PRK12323 DNA polymerase III su 99.8 1.2E-18 2.6E-23 182.1 19.7 202 117-359 6-231 (700)
32 CHL00195 ycf46 Ycf46; Provisio 99.8 4.8E-19 1E-23 184.1 16.0 224 123-412 227-466 (489)
33 PRK14964 DNA polymerase III su 99.8 3.1E-18 6.7E-23 177.2 21.7 196 124-360 13-224 (491)
34 PRK14949 DNA polymerase III su 99.8 1.9E-18 4E-23 186.2 20.7 195 124-359 16-226 (944)
35 PRK14961 DNA polymerase III su 99.8 3.2E-18 6.9E-23 174.1 21.4 202 118-360 7-227 (363)
36 PRK14959 DNA polymerase III su 99.8 1.9E-18 4.1E-23 182.1 19.5 267 118-456 7-293 (624)
37 TIGR01242 26Sp45 26S proteasom 99.8 7.4E-19 1.6E-23 179.3 15.6 225 119-409 117-363 (364)
38 COG0466 Lon ATP-dependent Lon 99.8 4.2E-18 9.1E-23 176.7 20.7 240 86-359 289-559 (782)
39 PRK14960 DNA polymerase III su 99.8 4.3E-18 9.2E-23 178.5 20.7 201 118-359 6-225 (702)
40 KOG2028 ATPase related to the 99.8 1.8E-18 3.8E-23 165.6 16.2 195 125-362 139-345 (554)
41 CHL00176 ftsH cell division pr 99.8 3.3E-18 7E-23 183.4 20.2 223 120-409 179-423 (638)
42 PRK06645 DNA polymerase III su 99.8 8.5E-18 1.8E-22 175.4 22.6 206 117-362 11-238 (507)
43 PRK07994 DNA polymerase III su 99.8 4.6E-18 9.9E-23 180.9 20.9 195 124-359 16-226 (647)
44 PRK14952 DNA polymerase III su 99.8 7E-18 1.5E-22 178.6 20.8 197 124-360 13-226 (584)
45 TIGR02881 spore_V_K stage V sp 99.8 1E-17 2.2E-22 163.0 20.1 207 125-361 7-238 (261)
46 KOG0727 26S proteasome regulat 99.8 1.8E-18 3.8E-23 158.0 13.3 219 125-411 156-398 (408)
47 PRK14958 DNA polymerase III su 99.8 6.2E-18 1.3E-22 177.6 19.3 203 117-360 6-227 (509)
48 TIGR01243 CDC48 AAA family ATP 99.8 5.1E-18 1.1E-22 187.9 19.4 240 123-413 452-714 (733)
49 TIGR01241 FtsH_fam ATP-depende 99.8 2.6E-18 5.7E-23 181.9 15.6 222 123-410 54-296 (495)
50 KOG0729 26S proteasome regulat 99.8 1.5E-18 3.3E-23 159.5 10.9 224 120-411 173-420 (435)
51 PRK08691 DNA polymerase III su 99.8 1.6E-17 3.4E-22 175.9 19.9 203 117-360 6-227 (709)
52 TIGR02639 ClpA ATP-dependent C 99.8 7.8E-18 1.7E-22 185.8 18.4 240 124-414 182-434 (731)
53 KOG0652 26S proteasome regulat 99.8 4.9E-18 1.1E-22 155.8 13.7 222 124-411 171-414 (424)
54 PRK13342 recombination factor 99.8 8.6E-17 1.9E-21 166.5 24.9 190 124-360 12-203 (413)
55 COG0464 SpoVK ATPases of the A 99.8 6.8E-18 1.5E-22 179.4 17.1 224 123-412 241-486 (494)
56 PRK07764 DNA polymerase III su 99.8 4.2E-17 9.1E-22 179.0 23.6 200 119-359 7-227 (824)
57 PRK14951 DNA polymerase III su 99.8 3.6E-17 7.7E-22 173.8 22.3 203 117-360 6-232 (618)
58 PRK00440 rfc replication facto 99.8 1.1E-16 2.3E-21 160.9 24.5 201 116-359 6-209 (319)
59 KOG0991 Replication factor C, 99.8 1E-17 2.2E-22 151.4 14.9 199 117-358 17-219 (333)
60 PRK04195 replication factor C 99.8 3.4E-17 7.3E-22 172.8 20.5 194 117-356 4-205 (482)
61 PRK14957 DNA polymerase III su 99.8 4.8E-17 1E-21 170.7 21.0 197 124-360 16-227 (546)
62 KOG0737 AAA+-type ATPase [Post 99.8 1.1E-17 2.4E-22 161.6 14.4 221 148-413 126-363 (386)
63 PRK13341 recombination factor 99.8 1.1E-16 2.3E-21 173.9 23.8 191 124-360 28-224 (725)
64 KOG2004 Mitochondrial ATP-depe 99.8 8.8E-17 1.9E-21 165.9 21.8 244 88-365 379-654 (906)
65 PRK05563 DNA polymerase III su 99.7 9.9E-17 2.1E-21 170.8 21.8 196 124-360 16-227 (559)
66 PRK08451 DNA polymerase III su 99.7 1.4E-16 3E-21 166.3 22.0 204 117-361 4-226 (535)
67 PRK05896 DNA polymerase III su 99.7 6.2E-17 1.3E-21 169.9 18.8 205 116-360 5-227 (605)
68 TIGR00602 rad24 checkpoint pro 99.7 3.2E-17 7E-22 174.4 16.8 226 117-358 74-328 (637)
69 KOG0726 26S proteasome regulat 99.7 4.8E-18 1E-22 158.1 8.8 220 125-412 186-429 (440)
70 PRK06893 DNA replication initi 99.7 6.5E-17 1.4E-21 154.0 16.6 194 121-358 13-208 (229)
71 PRK14969 DNA polymerase III su 99.7 9.6E-17 2.1E-21 169.8 19.1 196 124-360 16-227 (527)
72 PRK07133 DNA polymerase III su 99.7 1.9E-16 4.1E-21 169.4 21.4 204 116-360 7-226 (725)
73 PRK14088 dnaA chromosomal repl 99.7 4.7E-16 1E-20 161.5 23.8 310 116-478 97-413 (440)
74 PRK06305 DNA polymerase III su 99.7 4.3E-16 9.3E-21 161.9 23.5 203 117-359 7-228 (451)
75 PRK12402 replication factor C 99.7 5.6E-16 1.2E-20 156.9 23.8 219 116-358 4-231 (337)
76 PRK14963 DNA polymerase III su 99.7 7E-16 1.5E-20 161.8 25.1 195 124-358 14-222 (504)
77 PRK09111 DNA polymerase III su 99.7 2.3E-16 5E-21 168.0 21.3 220 116-359 13-239 (598)
78 PRK14965 DNA polymerase III su 99.7 1.6E-16 3.5E-21 170.0 19.6 197 124-361 16-228 (576)
79 KOG0731 AAA+-type ATPase conta 99.7 6.3E-17 1.4E-21 171.4 16.1 227 121-412 308-556 (774)
80 PRK14953 DNA polymerase III su 99.7 3.2E-16 7E-21 163.8 20.7 204 117-360 6-227 (486)
81 TIGR03689 pup_AAA proteasome A 99.7 6E-16 1.3E-20 160.8 22.4 177 124-322 182-380 (512)
82 TIGR02397 dnaX_nterm DNA polym 99.7 4.5E-16 9.8E-21 158.8 21.1 197 124-360 14-225 (355)
83 PRK00149 dnaA chromosomal repl 99.7 1.2E-15 2.6E-20 159.9 24.1 213 117-364 115-333 (450)
84 KOG0740 AAA+-type ATPase [Post 99.7 4.9E-17 1.1E-21 162.8 12.6 253 93-413 141-408 (428)
85 PRK08727 hypothetical protein; 99.7 2E-16 4.3E-21 151.0 16.3 190 146-408 38-230 (233)
86 TIGR00362 DnaA chromosomal rep 99.7 1.1E-15 2.5E-20 158.2 22.0 213 117-363 103-320 (405)
87 TIGR03345 VI_ClpV1 type VI sec 99.7 3.6E-16 7.7E-21 173.8 18.7 213 124-362 187-411 (852)
88 TIGR03015 pepcterm_ATPase puta 99.7 1.3E-15 2.9E-20 149.1 20.5 235 131-410 26-267 (269)
89 CHL00181 cbbX CbbX; Provisiona 99.7 5.3E-16 1.1E-20 152.0 17.5 215 110-360 14-253 (287)
90 TIGR02902 spore_lonB ATP-depen 99.7 3.9E-16 8.5E-21 165.6 17.9 237 124-408 65-331 (531)
91 PRK08084 DNA replication initi 99.7 5.1E-16 1.1E-20 148.4 16.0 180 136-358 32-214 (235)
92 PRK06647 DNA polymerase III su 99.7 1.6E-15 3.4E-20 161.0 21.1 196 124-360 16-227 (563)
93 PRK14955 DNA polymerase III su 99.7 1.9E-15 4E-20 155.6 20.8 205 117-362 6-237 (397)
94 PRK14954 DNA polymerase III su 99.7 2.5E-15 5.4E-20 160.3 21.8 197 124-361 16-236 (620)
95 TIGR02880 cbbX_cfxQ probable R 99.7 1.1E-15 2.3E-20 150.0 17.2 203 125-360 23-252 (284)
96 PHA02544 44 clamp loader, smal 99.7 1E-14 2.2E-19 146.4 24.6 194 116-357 10-213 (316)
97 COG2812 DnaX DNA polymerase II 99.7 4.1E-16 8.9E-21 160.8 14.2 210 124-361 16-228 (515)
98 CHL00206 ycf2 Ycf2; Provisiona 99.7 2.4E-16 5.3E-21 178.3 13.5 215 148-411 1629-1879(2281)
99 TIGR00763 lon ATP-dependent pr 99.7 4.2E-15 9.1E-20 165.1 22.6 233 92-358 292-555 (775)
100 PRK14970 DNA polymerase III su 99.7 3.7E-15 8E-20 152.5 20.3 204 118-361 8-217 (367)
101 PRK14087 dnaA chromosomal repl 99.7 5.2E-15 1.1E-19 153.8 21.5 185 149-363 141-329 (450)
102 COG0465 HflB ATP-dependent Zn 99.7 6.1E-16 1.3E-20 161.3 14.4 224 121-411 147-392 (596)
103 PRK14950 DNA polymerase III su 99.7 4.2E-15 9.1E-20 159.9 21.3 195 124-359 16-227 (585)
104 PRK10787 DNA-binding ATP-depen 99.7 4.3E-15 9.3E-20 163.4 21.7 222 89-345 291-540 (784)
105 CHL00095 clpC Clp protease ATP 99.7 1.1E-15 2.4E-20 170.7 16.6 212 123-361 178-401 (821)
106 TIGR03420 DnaA_homol_Hda DnaA 99.7 2.3E-15 5.1E-20 143.4 16.2 186 129-363 22-211 (226)
107 KOG0735 AAA+-type ATPase [Post 99.7 1.5E-15 3.3E-20 156.6 15.3 178 149-365 701-889 (952)
108 PLN00020 ribulose bisphosphate 99.7 1.4E-15 3.1E-20 148.6 13.9 157 147-340 146-328 (413)
109 PRK14948 DNA polymerase III su 99.6 1.6E-14 3.4E-19 155.1 23.2 216 117-358 6-227 (620)
110 PRK14086 dnaA chromosomal repl 99.6 1.1E-14 2.3E-19 153.2 20.7 215 115-364 279-499 (617)
111 PRK05642 DNA replication initi 99.6 7.2E-15 1.6E-19 140.2 17.0 168 149-359 45-214 (234)
112 PRK11034 clpA ATP-dependent Cl 99.6 2.6E-15 5.7E-20 163.9 15.2 239 124-414 186-438 (758)
113 PRK14971 DNA polymerase III su 99.6 2.8E-14 6.2E-19 153.2 22.8 197 124-361 17-230 (614)
114 PRK12422 chromosomal replicati 99.6 1.8E-14 4E-19 149.2 20.5 205 117-358 104-318 (445)
115 PF00308 Bac_DnaA: Bacterial d 99.6 9.2E-15 2E-19 137.9 16.7 211 117-361 1-216 (219)
116 PRK08903 DnaA regulatory inact 99.6 1.2E-14 2.6E-19 138.6 17.2 185 147-407 40-224 (227)
117 PRK10733 hflB ATP-dependent me 99.6 1E-14 2.2E-19 158.4 18.6 219 125-410 153-393 (644)
118 TIGR01243 CDC48 AAA family ATP 99.6 1.1E-14 2.3E-19 161.6 17.3 247 120-413 174-439 (733)
119 TIGR03346 chaperone_ClpB ATP-d 99.6 2.1E-14 4.6E-19 160.9 17.6 213 124-362 173-397 (852)
120 PRK04132 replication factor C 99.6 1.4E-13 3E-18 150.4 22.4 170 151-359 566-737 (846)
121 TIGR02903 spore_lon_C ATP-depe 99.6 1.1E-13 2.4E-18 149.2 20.6 244 124-410 154-431 (615)
122 PRK06620 hypothetical protein; 99.6 8.1E-14 1.7E-18 130.8 15.4 150 150-358 45-194 (214)
123 PRK09112 DNA polymerase III su 99.6 6.2E-14 1.3E-18 140.8 15.0 208 124-358 23-245 (351)
124 PF00004 AAA: ATPase family as 99.5 1.7E-14 3.7E-19 125.0 9.0 119 152-305 1-131 (132)
125 PRK09087 hypothetical protein; 99.5 1.3E-13 2.9E-18 130.5 15.7 190 137-409 33-222 (226)
126 PRK07940 DNA polymerase III su 99.5 2E-13 4.4E-18 138.9 17.4 202 123-355 4-215 (394)
127 KOG0651 26S proteasome regulat 99.5 1.4E-14 3E-19 136.6 7.9 222 123-412 131-376 (388)
128 KOG0741 AAA+-type ATPase [Post 99.5 4.4E-14 9.6E-19 141.5 11.6 241 125-412 222-493 (744)
129 PF05621 TniB: Bacterial TniB 99.5 1.8E-13 3.9E-18 131.5 15.1 210 144-367 56-275 (302)
130 TIGR00678 holB DNA polymerase 99.5 2.3E-13 4.9E-18 125.9 14.9 169 140-350 4-188 (188)
131 KOG0730 AAA+-type ATPase [Post 99.5 1.7E-13 3.7E-18 141.5 15.1 200 124-364 184-404 (693)
132 COG1224 TIP49 DNA helicase TIP 99.5 1.2E-12 2.5E-17 126.0 19.5 133 239-409 291-432 (450)
133 PRK10865 protein disaggregatio 99.5 2E-13 4.4E-18 152.5 16.7 209 124-358 178-398 (857)
134 COG0593 DnaA ATPase involved i 99.5 2E-12 4.2E-17 130.1 21.0 218 115-366 78-299 (408)
135 COG0542 clpA ATP-binding subun 99.5 3.9E-13 8.4E-18 144.0 14.9 214 123-363 169-395 (786)
136 PRK11034 clpA ATP-dependent Cl 99.5 1.1E-12 2.5E-17 143.3 16.7 213 123-358 457-712 (758)
137 KOG2543 Origin recognition com 99.5 3.1E-12 6.8E-17 124.3 17.3 223 122-359 4-232 (438)
138 KOG0732 AAA+-type ATPase conta 99.4 9.3E-13 2E-17 143.7 14.4 246 122-413 263-529 (1080)
139 PF05673 DUF815: Protein of un 99.4 1.4E-11 3E-16 114.9 19.7 193 124-356 27-244 (249)
140 TIGR02640 gas_vesic_GvpN gas v 99.4 9E-12 1.9E-16 121.1 19.4 221 132-412 6-260 (262)
141 KOG1969 DNA replication checkp 99.4 5.2E-12 1.1E-16 131.5 17.9 211 116-364 260-521 (877)
142 PRK07471 DNA polymerase III su 99.4 8.7E-12 1.9E-16 126.0 19.2 208 124-356 19-241 (365)
143 KOG0990 Replication factor C, 99.4 7.9E-13 1.7E-17 125.7 10.6 200 118-359 32-238 (360)
144 TIGR03345 VI_ClpV1 type VI sec 99.4 2.1E-12 4.5E-17 144.0 15.2 218 122-360 564-829 (852)
145 cd08768 Cdc6_C Winged-helix do 99.4 8.7E-13 1.9E-17 105.6 8.8 81 422-502 1-87 (87)
146 PRK07399 DNA polymerase III su 99.4 1.4E-11 2.9E-16 122.3 18.9 215 123-358 3-226 (314)
147 TIGR02639 ClpA ATP-dependent C 99.4 6E-12 1.3E-16 139.3 18.0 213 123-358 453-708 (731)
148 COG0470 HolB ATPase involved i 99.4 6.1E-12 1.3E-16 126.6 15.3 189 125-360 2-206 (325)
149 PF03215 Rad17: Rad17 cell cyc 99.4 1.2E-11 2.6E-16 129.8 17.3 224 116-359 8-269 (519)
150 KOG2035 Replication factor C, 99.4 1.4E-11 3E-16 114.8 15.2 206 119-358 5-233 (351)
151 KOG0742 AAA+-type ATPase [Post 99.4 1.2E-11 2.6E-16 120.7 14.9 139 148-322 383-530 (630)
152 PF09079 Cdc6_C: CDC6, C termi 99.4 3.6E-12 7.8E-17 101.4 9.3 78 429-506 1-85 (85)
153 TIGR03346 chaperone_ClpB ATP-d 99.4 1.3E-11 2.8E-16 138.7 17.3 221 122-362 563-826 (852)
154 PRK05342 clpX ATP-dependent pr 99.3 1.2E-11 2.7E-16 126.6 14.4 207 125-359 72-376 (412)
155 PRK05564 DNA polymerase III su 99.3 3.6E-11 7.9E-16 120.2 17.1 188 124-356 4-193 (313)
156 PRK05201 hslU ATP-dependent pr 99.3 2.3E-11 5.1E-16 122.1 15.5 121 239-362 249-407 (443)
157 TIGR00390 hslU ATP-dependent p 99.3 7.6E-11 1.7E-15 118.4 19.1 122 239-363 247-406 (441)
158 PF01637 Arch_ATPase: Archaeal 99.3 9E-12 2E-16 118.8 11.7 204 126-349 1-230 (234)
159 KOG0744 AAA+-type ATPase [Post 99.3 4.1E-12 8.9E-17 120.6 8.6 150 149-323 177-343 (423)
160 TIGR00382 clpX endopeptidase C 99.3 4.6E-11 9.9E-16 121.7 15.6 211 124-362 77-385 (413)
161 PRK10865 protein disaggregatio 99.3 3.9E-11 8.5E-16 134.3 16.3 217 122-358 566-825 (857)
162 PRK13407 bchI magnesium chelat 99.3 3.2E-11 7E-16 119.9 13.7 252 123-413 7-310 (334)
163 PF06068 TIP49: TIP49 C-termin 99.3 5.1E-11 1.1E-15 116.8 14.7 110 239-358 278-396 (398)
164 CHL00095 clpC Clp protease ATP 99.3 6.1E-11 1.3E-15 132.9 17.6 217 122-358 507-778 (821)
165 PF13401 AAA_22: AAA domain; P 99.3 1.4E-11 3.1E-16 106.6 9.7 121 148-277 3-123 (131)
166 PRK13531 regulatory ATPase Rav 99.3 7.7E-11 1.7E-15 120.8 16.2 226 123-411 19-285 (498)
167 COG0542 clpA ATP-binding subun 99.3 4E-11 8.8E-16 128.7 14.6 217 122-358 489-751 (786)
168 PRK05707 DNA polymerase III su 99.3 7E-11 1.5E-15 117.9 15.2 179 149-356 22-206 (328)
169 cd00009 AAA The AAA+ (ATPases 99.3 6.4E-11 1.4E-15 103.9 13.2 147 128-306 2-151 (151)
170 KOG0735 AAA+-type ATPase [Post 99.3 1.9E-10 4.1E-15 119.6 18.1 184 148-365 430-628 (952)
171 PRK08058 DNA polymerase III su 99.3 7.4E-11 1.6E-15 118.4 15.1 197 124-356 5-207 (329)
172 PRK06871 DNA polymerase III su 99.2 3.8E-09 8.2E-14 104.7 25.2 180 137-356 11-206 (325)
173 TIGR02030 BchI-ChlI magnesium 99.2 1.7E-10 3.6E-15 115.2 15.6 142 240-413 132-313 (337)
174 TIGR01650 PD_CobS cobaltochela 99.2 2.3E-10 4.9E-15 112.3 16.0 170 149-341 64-253 (327)
175 KOG1970 Checkpoint RAD17-RFC c 99.2 1.3E-10 2.7E-15 118.0 14.3 216 115-357 70-319 (634)
176 COG3267 ExeA Type II secretory 99.2 4E-10 8.7E-15 104.7 16.2 214 137-367 40-259 (269)
177 CHL00081 chlI Mg-protoporyphyr 99.2 3.7E-10 8E-15 112.6 16.5 250 121-414 14-327 (350)
178 PRK08769 DNA polymerase III su 99.2 3.9E-10 8.4E-15 111.6 16.5 186 136-356 12-211 (319)
179 PF00931 NB-ARC: NB-ARC domain 99.2 4.7E-10 1E-14 110.9 17.2 204 129-357 1-205 (287)
180 KOG1942 DNA helicase, TBP-inte 99.2 7E-10 1.5E-14 104.2 16.5 135 238-410 295-439 (456)
181 TIGR02974 phageshock_pspF psp 99.2 8.3E-11 1.8E-15 117.8 11.1 211 126-361 1-233 (329)
182 PRK07993 DNA polymerase III su 99.2 9.8E-10 2.1E-14 110.0 17.6 180 138-356 12-207 (334)
183 TIGR02442 Cob-chelat-sub cobal 99.2 3.9E-10 8.5E-15 122.6 15.8 142 241-414 128-309 (633)
184 COG0714 MoxR-like ATPases [Gen 99.2 9E-10 1.9E-14 110.9 16.8 163 126-321 26-203 (329)
185 TIGR02031 BchD-ChlD magnesium 99.2 4.8E-10 1E-14 120.6 15.6 215 146-413 13-262 (589)
186 PF13191 AAA_16: AAA ATPase do 99.2 8.4E-11 1.8E-15 108.1 8.5 134 126-267 2-178 (185)
187 PF13177 DNA_pol3_delta2: DNA 99.1 6.8E-10 1.5E-14 99.7 12.9 143 136-308 5-162 (162)
188 TIGR00764 lon_rel lon-related 99.1 3.8E-09 8.1E-14 113.9 20.5 139 241-409 219-391 (608)
189 TIGR01817 nifA Nif-specific re 99.1 2E-10 4.2E-15 123.4 10.2 216 121-361 193-428 (534)
190 COG2607 Predicted ATPase (AAA+ 99.1 1.1E-08 2.4E-13 93.9 19.2 193 125-356 61-276 (287)
191 TIGR02329 propionate_PrpR prop 99.1 1.3E-09 2.8E-14 115.2 15.1 220 118-361 206-450 (526)
192 smart00350 MCM minichromosome 99.1 1.7E-09 3.8E-14 114.8 15.7 232 124-411 203-506 (509)
193 PRK05022 anaerobic nitric oxid 99.1 1.3E-09 2.8E-14 116.1 14.5 216 122-362 185-421 (509)
194 PRK06964 DNA polymerase III su 99.1 3.3E-09 7.2E-14 105.9 16.3 190 146-356 18-228 (342)
195 PRK11608 pspF phage shock prot 99.1 8.9E-10 1.9E-14 110.5 12.0 213 123-361 5-240 (326)
196 PF14516 AAA_35: AAA-like doma 99.1 1.8E-07 3.9E-12 94.1 28.4 209 126-357 13-243 (331)
197 KOG2680 DNA helicase TIP49, TB 99.1 7.9E-09 1.7E-13 97.5 16.9 135 239-411 288-431 (454)
198 TIGR00368 Mg chelatase-related 99.1 1.7E-09 3.7E-14 113.5 13.9 138 240-407 296-497 (499)
199 PRK11331 5-methylcytosine-spec 99.1 3.8E-09 8.2E-14 107.6 15.8 172 124-317 175-369 (459)
200 PF07728 AAA_5: AAA domain (dy 99.1 9.1E-11 2E-15 102.8 3.3 121 151-295 1-138 (139)
201 PTZ00111 DNA replication licen 99.0 3.6E-08 7.8E-13 107.9 23.8 166 124-315 450-652 (915)
202 PRK15424 propionate catabolism 99.0 6.3E-09 1.4E-13 110.0 17.6 225 121-360 216-464 (538)
203 COG1239 ChlI Mg-chelatase subu 99.0 7.1E-09 1.5E-13 103.3 16.1 242 124-411 17-324 (423)
204 PRK06090 DNA polymerase III su 99.0 2.3E-08 4.9E-13 98.9 19.4 185 137-355 12-203 (319)
205 KOG0743 AAA+-type ATPase [Post 99.0 2.4E-08 5.3E-13 100.1 18.7 155 124-321 201-384 (457)
206 PRK11388 DNA-binding transcrip 99.0 2.8E-09 6.2E-14 117.0 12.3 212 121-360 322-553 (638)
207 PRK13765 ATP-dependent proteas 99.0 1.4E-08 3.1E-13 109.2 17.2 138 240-407 227-398 (637)
208 KOG0736 Peroxisome assembly fa 99.0 5.6E-09 1.2E-13 109.8 13.6 176 126-340 403-594 (953)
209 PRK10820 DNA-binding transcrip 99.0 4.6E-09 9.9E-14 111.9 13.2 218 119-361 199-437 (520)
210 COG1221 PspF Transcriptional r 99.0 9E-09 2E-13 103.5 13.4 220 123-366 77-314 (403)
211 PRK15429 formate hydrogenlyase 98.9 2.5E-08 5.4E-13 110.3 15.2 214 122-361 374-609 (686)
212 PRK15115 response regulator Gl 98.9 2.6E-08 5.7E-13 104.8 13.7 211 125-360 135-366 (444)
213 COG2204 AtoC Response regulato 98.9 1.8E-08 4E-13 103.2 11.9 217 122-363 139-376 (464)
214 PRK07132 DNA polymerase III su 98.8 1.5E-07 3.3E-12 92.5 17.3 175 136-355 4-186 (299)
215 PHA02244 ATPase-like protein 98.8 4.9E-08 1.1E-12 97.0 13.8 150 125-308 97-262 (383)
216 PF05729 NACHT: NACHT domain 98.8 4.6E-08 1E-12 87.9 12.5 152 151-321 2-164 (166)
217 COG1220 HslU ATP-dependent pro 98.8 4.1E-07 8.8E-12 87.7 19.0 117 239-358 250-404 (444)
218 PF13173 AAA_14: AAA domain 98.8 1.9E-08 4.1E-13 86.7 9.0 126 149-312 2-127 (128)
219 COG3829 RocR Transcriptional r 98.8 2E-08 4.3E-13 102.9 10.3 223 117-362 238-480 (560)
220 KOG0745 Putative ATP-dependent 98.8 5E-08 1.1E-12 96.6 12.5 187 149-363 226-510 (564)
221 PRK07276 DNA polymerase III su 98.8 1.1E-07 2.4E-12 92.6 14.8 189 132-355 6-199 (290)
222 COG3604 FhlA Transcriptional r 98.8 4.1E-08 8.8E-13 99.3 11.8 216 122-361 221-456 (550)
223 PF00158 Sigma54_activat: Sigm 98.8 8.9E-09 1.9E-13 92.8 6.5 135 126-281 1-143 (168)
224 PRK09862 putative ATP-dependen 98.8 3.8E-08 8.1E-13 103.0 11.9 140 240-409 295-492 (506)
225 PRK13406 bchD magnesium chelat 98.8 9.5E-08 2.1E-12 102.1 15.0 224 135-413 10-254 (584)
226 PRK08116 hypothetical protein; 98.8 1.9E-08 4.1E-13 97.9 8.7 159 133-321 97-261 (268)
227 PF10443 RNA12: RNA12 protein; 98.8 8.6E-06 1.9E-10 82.2 27.3 174 129-322 1-231 (431)
228 PF07724 AAA_2: AAA domain (Cd 98.8 8.3E-09 1.8E-13 93.3 5.2 108 149-281 3-129 (171)
229 PF12775 AAA_7: P-loop contain 98.8 1.3E-08 2.7E-13 99.2 6.8 164 131-322 17-195 (272)
230 smart00382 AAA ATPases associa 98.8 2E-08 4.4E-13 87.1 7.3 119 149-281 2-125 (148)
231 PF14629 ORC4_C: Origin recogn 98.7 6.7E-07 1.4E-11 83.6 17.6 167 309-509 21-203 (203)
232 PRK08699 DNA polymerase III su 98.7 1.1E-07 2.3E-12 95.0 12.8 149 148-319 20-184 (325)
233 PRK12377 putative replication 98.7 2.7E-08 5.8E-13 95.1 8.0 143 132-306 86-234 (248)
234 PRK05917 DNA polymerase III su 98.7 6.9E-07 1.5E-11 86.8 17.5 138 138-307 7-154 (290)
235 TIGR02915 PEP_resp_reg putativ 98.7 6.7E-08 1.4E-12 101.8 11.1 213 124-361 139-372 (445)
236 KOG1051 Chaperone HSP104 and r 98.7 2.1E-07 4.6E-12 101.8 14.8 175 124-321 562-785 (898)
237 TIGR01818 ntrC nitrogen regula 98.7 7E-08 1.5E-12 102.1 11.0 212 125-362 135-368 (463)
238 PRK11361 acetoacetate metaboli 98.7 1.1E-07 2.3E-12 100.6 11.5 211 124-360 143-375 (457)
239 PRK10923 glnG nitrogen regulat 98.7 9.9E-08 2.1E-12 101.2 11.2 212 124-361 138-371 (469)
240 COG1219 ClpX ATP-dependent pro 98.7 2.5E-07 5.4E-12 88.5 12.6 180 149-357 97-363 (408)
241 PRK05818 DNA polymerase III su 98.7 6.7E-07 1.5E-11 85.0 15.4 176 147-355 5-192 (261)
242 COG1241 MCM2 Predicted ATPase 98.7 4E-07 8.6E-12 97.5 15.1 305 123-491 285-680 (682)
243 PF07726 AAA_3: ATPase family 98.6 3.6E-09 7.9E-14 88.8 -0.7 106 151-283 1-114 (131)
244 KOG1968 Replication factor C, 98.6 1E-07 2.3E-12 105.0 10.0 210 115-357 308-535 (871)
245 PRK07952 DNA replication prote 98.6 2.2E-07 4.7E-12 88.7 10.1 129 149-306 99-233 (244)
246 PRK08181 transposase; Validate 98.6 3.3E-07 7.1E-12 88.8 11.4 102 148-281 105-208 (269)
247 PLN03210 Resistant to P. syrin 98.6 3.3E-06 7.2E-11 98.8 21.8 201 122-356 182-397 (1153)
248 PRK06921 hypothetical protein; 98.6 2.4E-07 5.1E-12 90.1 10.3 127 148-307 116-254 (266)
249 PTZ00202 tuzin; Provisional 98.6 2.6E-06 5.7E-11 85.9 17.7 175 123-323 261-437 (550)
250 KOG0741 AAA+-type ATPase [Post 98.6 1E-06 2.2E-11 89.5 14.1 153 150-342 539-702 (744)
251 PRK06835 DNA replication prote 98.6 1E-07 2.2E-12 95.1 6.6 141 137-308 173-318 (329)
252 PF14532 Sigma54_activ_2: Sigm 98.5 2.8E-08 6.1E-13 86.8 1.7 133 127-307 1-138 (138)
253 smart00763 AAA_PrkA PrkA AAA d 98.5 5.7E-06 1.2E-10 82.5 16.7 53 125-177 52-106 (361)
254 PRK14700 recombination factor 98.5 1.3E-06 2.9E-11 84.1 11.7 87 267-360 3-94 (300)
255 KOG0482 DNA replication licens 98.5 6.1E-06 1.3E-10 83.5 16.6 296 123-484 341-711 (721)
256 PRK06526 transposase; Provisio 98.4 7.7E-08 1.7E-12 92.7 1.8 102 148-281 97-200 (254)
257 PRK08939 primosomal protein Dn 98.4 1.8E-06 3.8E-11 85.6 10.7 122 128-280 135-259 (306)
258 PF07693 KAP_NTPase: KAP famil 98.4 2.4E-05 5.2E-10 78.7 18.9 170 147-322 18-265 (325)
259 PF01078 Mg_chelatase: Magnesi 98.4 9E-08 2E-12 87.8 0.8 46 124-175 3-48 (206)
260 COG1484 DnaC DNA replication p 98.3 3.9E-06 8.5E-11 80.9 10.8 106 129-265 88-195 (254)
261 KOG0480 DNA replication licens 98.3 5.6E-06 1.2E-10 86.0 12.2 235 122-413 343-647 (764)
262 COG0606 Predicted ATPase with 98.3 1.5E-06 3.2E-11 88.3 7.8 44 125-174 180-223 (490)
263 PRK10365 transcriptional regul 98.3 2.1E-06 4.5E-11 90.3 9.2 211 125-360 140-371 (441)
264 PF10923 DUF2791: P-loop Domai 98.3 0.00029 6.4E-09 71.9 24.1 80 125-212 26-112 (416)
265 PRK04841 transcriptional regul 98.3 4.3E-05 9.2E-10 87.9 20.2 200 121-354 11-225 (903)
266 PRK00771 signal recognition pa 98.2 0.00022 4.9E-09 73.8 22.5 131 111-253 49-189 (437)
267 KOG0478 DNA replication licens 98.2 2.1E-05 4.6E-10 82.5 14.0 166 125-317 430-623 (804)
268 PF13604 AAA_30: AAA domain; P 98.2 7.5E-06 1.6E-10 76.0 9.6 106 148-277 17-128 (196)
269 COG3899 Predicted ATPase [Gene 98.2 0.00019 4.2E-09 80.8 22.3 303 126-485 2-357 (849)
270 PRK12723 flagellar biosynthesi 98.2 1.8E-05 3.9E-10 80.6 12.8 180 128-320 146-335 (388)
271 KOG4658 Apoptotic ATPase [Sign 98.2 7.5E-05 1.6E-09 84.0 18.5 205 127-358 161-366 (889)
272 PHA00729 NTP-binding motif con 98.2 9.8E-06 2.1E-10 75.8 9.5 30 145-174 13-42 (226)
273 PRK09183 transposase/IS protei 98.2 2.6E-06 5.6E-11 82.6 5.9 103 148-281 101-205 (259)
274 KOG1051 Chaperone HSP104 and r 98.2 7.4E-06 1.6E-10 90.0 10.0 168 125-318 187-361 (898)
275 PF01695 IstB_IS21: IstB-like 98.2 3.4E-06 7.4E-11 76.9 6.2 102 148-281 46-149 (178)
276 COG3283 TyrR Transcriptional r 98.1 6.4E-05 1.4E-09 73.3 14.5 211 123-363 203-434 (511)
277 COG2909 MalT ATP-dependent tra 98.1 0.00024 5.1E-09 76.9 19.5 292 121-493 16-326 (894)
278 PF03969 AFG1_ATPase: AFG1-lik 98.1 6.9E-06 1.5E-10 83.1 7.4 108 147-281 60-167 (362)
279 COG4650 RtcR Sigma54-dependent 98.1 7.6E-05 1.6E-09 70.9 13.3 126 123-265 183-308 (531)
280 COG1373 Predicted ATPase (AAA+ 98.0 0.00017 3.7E-09 74.4 16.6 124 151-315 39-162 (398)
281 PF00493 MCM: MCM2/3/5 family 98.0 1E-07 2.2E-12 95.8 -7.5 168 125-320 25-221 (331)
282 cd01128 rho_factor Transcripti 98.0 1.4E-05 3.1E-10 76.6 7.4 100 147-254 14-118 (249)
283 cd01120 RecA-like_NTPases RecA 98.0 4.8E-05 1E-09 67.8 10.3 40 151-197 1-40 (165)
284 PRK13695 putative NTPase; Prov 98.0 1.3E-05 2.9E-10 72.8 6.2 76 238-321 95-173 (174)
285 KOG2170 ATPase of the AAA+ sup 97.9 8.6E-05 1.9E-09 71.0 10.9 135 125-281 83-224 (344)
286 PRK06581 DNA polymerase III su 97.9 0.0018 3.8E-08 60.8 18.0 185 140-358 5-192 (263)
287 PRK04296 thymidine kinase; Pro 97.8 3.3E-05 7.1E-10 71.3 6.5 111 150-277 3-113 (190)
288 PRK12608 transcription termina 97.8 0.00011 2.3E-09 73.8 10.4 97 147-253 131-234 (380)
289 KOG0481 DNA replication licens 97.8 0.00064 1.4E-08 69.3 15.6 152 115-297 323-505 (729)
290 COG5271 MDN1 AAA ATPase contai 97.8 0.00079 1.7E-08 77.0 17.3 146 148-321 887-1048(4600)
291 COG3284 AcoR Transcriptional a 97.8 7.1E-05 1.5E-09 78.6 9.0 212 127-363 316-542 (606)
292 PRK10536 hypothetical protein; 97.8 0.0005 1.1E-08 65.5 13.8 43 124-172 55-97 (262)
293 PF10236 DAP3: Mitochondrial r 97.8 0.0027 5.9E-08 63.2 19.7 43 129-172 4-46 (309)
294 PF00910 RNA_helicase: RNA hel 97.7 8E-05 1.7E-09 61.9 6.7 26 152-177 1-26 (107)
295 COG1618 Predicted nucleotide k 97.7 0.00025 5.4E-09 61.8 9.8 28 149-176 5-32 (179)
296 TIGR00767 rho transcription te 97.7 8E-05 1.7E-09 75.2 7.3 100 147-253 166-269 (415)
297 PF12774 AAA_6: Hydrolytic ATP 97.7 0.00043 9.3E-09 65.7 11.9 139 136-317 21-177 (231)
298 PF05970 PIF1: PIF1-like helic 97.7 0.0001 2.2E-09 75.4 8.1 45 131-175 4-48 (364)
299 PRK14974 cell division protein 97.7 0.0012 2.7E-08 66.0 15.6 96 148-253 139-236 (336)
300 KOG0477 DNA replication licens 97.7 0.00023 5E-09 74.1 10.2 148 124-298 449-624 (854)
301 PRK09376 rho transcription ter 97.7 9.8E-05 2.1E-09 74.3 7.3 99 147-254 167-271 (416)
302 COG0464 SpoVK ATPases of the A 97.7 0.00071 1.5E-08 72.2 14.2 178 146-364 15-203 (494)
303 PF12780 AAA_8: P-loop contain 97.7 0.00099 2.1E-08 64.7 13.8 176 124-338 8-226 (268)
304 PRK08485 DNA polymerase III su 97.7 0.00038 8.2E-09 63.3 10.1 106 243-360 58-174 (206)
305 PRK10875 recD exonuclease V su 97.6 0.00034 7.4E-09 75.6 10.9 121 149-277 167-299 (615)
306 PF04665 Pox_A32: Poxvirus A32 97.6 0.0029 6.3E-08 60.0 15.4 149 148-318 12-168 (241)
307 PF06309 Torsin: Torsin; Inte 97.6 0.00041 8.9E-09 58.4 8.4 52 125-176 26-80 (127)
308 PF07088 GvpD: GvpD gas vesicl 97.6 0.0003 6.5E-09 69.8 8.8 129 142-282 3-159 (484)
309 cd00046 DEXDc DEAD-like helica 97.6 0.00033 7.1E-09 60.2 8.3 25 151-175 2-26 (144)
310 cd01121 Sms Sms (bacterial rad 97.6 0.00022 4.8E-09 72.5 8.0 89 149-253 82-172 (372)
311 TIGR01447 recD exodeoxyribonuc 97.5 0.00048 1E-08 74.3 10.8 122 149-277 160-293 (586)
312 PHA02774 E1; Provisional 97.5 0.00061 1.3E-08 71.7 10.5 40 135-174 419-459 (613)
313 cd01124 KaiC KaiC is a circadi 97.5 0.00031 6.7E-09 64.4 7.3 45 151-204 1-45 (187)
314 PF09848 DUF2075: Uncharacteri 97.5 0.0004 8.7E-09 70.7 8.7 23 151-173 3-25 (352)
315 PRK15455 PrkA family serine pr 97.5 0.00019 4.1E-09 75.4 6.2 53 123-175 75-129 (644)
316 TIGR01613 primase_Cterm phage/ 97.5 0.0023 4.9E-08 63.8 13.7 47 129-175 54-102 (304)
317 PF02562 PhoH: PhoH-like prote 97.4 0.00082 1.8E-08 62.2 9.4 41 129-175 5-45 (205)
318 TIGR01448 recD_rel helicase, p 97.4 0.0014 3E-08 72.8 12.7 106 149-277 338-450 (720)
319 TIGR00959 ffh signal recogniti 97.4 0.045 9.7E-07 56.8 22.3 95 149-252 99-195 (428)
320 PRK10867 signal recognition pa 97.4 0.046 1E-06 56.8 22.3 96 149-253 100-197 (433)
321 PRK05574 holA DNA polymerase I 97.3 0.037 7.9E-07 56.0 21.3 175 148-360 16-195 (340)
322 PF13207 AAA_17: AAA domain; P 97.3 0.00022 4.8E-09 60.4 4.1 24 151-174 1-24 (121)
323 TIGR02688 conserved hypothetic 97.3 0.0022 4.7E-08 65.3 11.6 108 106-256 159-277 (449)
324 KOG3347 Predicted nucleotide k 97.3 0.00013 2.8E-09 62.5 2.2 41 148-200 6-46 (176)
325 PRK11823 DNA repair protein Ra 97.3 0.0011 2.5E-08 69.3 9.8 89 149-253 80-170 (446)
326 PF04851 ResIII: Type III rest 97.3 0.0016 3.5E-08 59.1 9.5 46 130-175 6-51 (184)
327 COG1485 Predicted ATPase [Gene 97.3 0.00062 1.3E-08 66.9 6.7 108 147-281 63-170 (367)
328 smart00487 DEXDc DEAD-like hel 97.3 0.0021 4.6E-08 58.7 10.1 23 150-172 25-47 (201)
329 COG2842 Uncharacterized ATPase 97.2 0.0016 3.4E-08 62.7 9.0 198 136-366 83-284 (297)
330 PF13245 AAA_19: Part of AAA d 97.2 0.00042 9E-09 53.5 4.2 26 149-174 10-35 (76)
331 TIGR02768 TraA_Ti Ti-type conj 97.2 0.0013 2.8E-08 73.3 9.7 107 149-277 368-474 (744)
332 COG5271 MDN1 AAA ATPase contai 97.2 0.0019 4.1E-08 74.1 10.6 149 148-321 1542-1704(4600)
333 TIGR02237 recomb_radB DNA repa 97.2 0.0016 3.5E-08 61.0 8.8 46 149-202 12-57 (209)
334 COG3854 SpoIIIAA ncharacterize 97.2 0.0009 2E-08 61.8 6.6 46 147-194 135-180 (308)
335 PRK08118 topology modulation p 97.2 0.00093 2E-08 60.2 6.6 25 150-174 2-26 (167)
336 PRK14722 flhF flagellar biosyn 97.1 0.0042 9E-08 63.0 11.6 92 148-252 136-228 (374)
337 KOG0479 DNA replication licens 97.1 0.012 2.5E-07 61.4 14.7 169 122-317 299-495 (818)
338 COG1066 Sms Predicted ATP-depe 97.1 0.0017 3.8E-08 65.0 8.6 138 149-306 93-243 (456)
339 PRK06585 holA DNA polymerase I 97.1 0.077 1.7E-06 53.8 20.8 111 239-360 81-191 (343)
340 TIGR01618 phage_P_loop phage n 97.1 0.00035 7.7E-09 65.5 3.4 22 149-170 12-33 (220)
341 TIGR00150 HI0065_YjeE ATPase, 97.1 0.00099 2.1E-08 57.2 5.8 43 130-174 5-47 (133)
342 PRK08533 flagellar accessory p 97.1 0.0034 7.5E-08 59.7 10.2 49 148-205 23-71 (230)
343 cd03115 SRP The signal recogni 97.1 0.0038 8.1E-08 56.6 10.1 92 151-252 2-95 (173)
344 PHA02624 large T antigen; Prov 97.1 0.0014 3.1E-08 69.3 8.1 48 140-197 421-469 (647)
345 TIGR01128 holA DNA polymerase 97.1 0.049 1.1E-06 54.0 18.8 112 239-360 46-160 (302)
346 TIGR01425 SRP54_euk signal rec 97.1 0.13 2.8E-06 53.2 22.0 152 149-313 100-255 (429)
347 COG4088 Predicted nucleotide k 97.1 0.0029 6.3E-08 57.5 8.5 27 150-176 2-28 (261)
348 PRK07452 DNA polymerase III su 97.1 0.04 8.7E-07 55.4 17.9 112 239-359 61-178 (326)
349 PRK13889 conjugal transfer rel 97.1 0.0032 7E-08 71.4 10.8 104 150-277 363-468 (988)
350 PTZ00494 tuzin-like protein; P 97.0 0.068 1.5E-06 54.5 18.4 175 123-323 370-547 (664)
351 TIGR03499 FlhF flagellar biosy 97.0 0.0097 2.1E-07 58.5 12.5 61 131-196 168-236 (282)
352 KOG2383 Predicted ATPase [Gene 97.0 0.00083 1.8E-08 66.8 4.7 111 148-281 113-233 (467)
353 PRK09361 radB DNA repair and r 97.0 0.0031 6.8E-08 59.8 8.4 38 149-193 23-60 (225)
354 PRK06067 flagellar accessory p 97.0 0.0039 8.6E-08 59.5 9.1 47 149-204 25-71 (234)
355 PRK05703 flhF flagellar biosyn 97.0 0.013 2.8E-07 61.0 13.5 149 149-314 221-374 (424)
356 TIGR02012 tigrfam_recA protein 97.0 0.0029 6.2E-08 62.9 8.2 90 149-253 55-147 (321)
357 PRK11889 flhF flagellar biosyn 97.0 0.023 5E-07 57.6 14.6 171 130-317 217-397 (436)
358 COG1102 Cmk Cytidylate kinase 96.9 0.00094 2E-08 58.3 3.8 40 152-209 3-42 (179)
359 PRK05800 cobU adenosylcobinami 96.9 0.0041 8.9E-08 56.2 8.1 87 151-252 3-89 (170)
360 PRK06696 uridine kinase; Valid 96.9 0.0027 5.9E-08 60.2 7.2 61 128-196 2-62 (223)
361 cd01131 PilT Pilus retraction 96.9 0.0016 3.5E-08 60.4 5.5 26 150-175 2-27 (198)
362 TIGR03574 selen_PSTK L-seryl-t 96.9 0.0027 5.8E-08 61.3 7.1 24 152-175 2-25 (249)
363 PF00448 SRP54: SRP54-type pro 96.9 0.0033 7.1E-08 58.2 7.4 151 149-314 1-157 (196)
364 PRK14712 conjugal transfer nic 96.9 0.0059 1.3E-07 72.0 11.0 108 149-277 852-965 (1623)
365 PRK05973 replicative DNA helic 96.8 0.01 2.2E-07 56.5 10.5 48 149-205 64-111 (237)
366 TIGR02858 spore_III_AA stage I 96.8 0.003 6.6E-08 61.4 7.1 28 147-174 109-136 (270)
367 TIGR00416 sms DNA repair prote 96.8 0.0032 6.9E-08 66.0 7.7 89 149-253 94-184 (454)
368 PF08298 AAA_PrkA: PrkA AAA do 96.8 0.0032 6.9E-08 62.6 7.1 69 124-200 61-131 (358)
369 PRK13826 Dtr system oriT relax 96.8 0.0089 1.9E-07 68.4 11.6 106 148-277 396-503 (1102)
370 COG5245 DYN1 Dynein, heavy cha 96.8 0.051 1.1E-06 62.6 16.6 149 148-322 1493-1660(3164)
371 PF13086 AAA_11: AAA domain; P 96.8 0.0014 3.1E-08 62.0 4.4 23 151-173 19-41 (236)
372 PF08433 KTI12: Chromatin asso 96.8 0.0029 6.2E-08 61.6 6.5 107 150-281 2-108 (270)
373 PF07034 ORC3_N: Origin recogn 96.8 0.07 1.5E-06 53.7 16.6 218 131-359 56-319 (330)
374 PF05272 VirE: Virulence-assoc 96.8 0.0024 5.3E-08 59.1 5.6 45 241-285 97-153 (198)
375 cd00983 recA RecA is a bacter 96.8 0.0044 9.6E-08 61.6 7.8 90 149-253 55-147 (325)
376 TIGR03877 thermo_KaiC_1 KaiC d 96.8 0.0095 2.1E-07 57.0 9.9 49 148-205 20-68 (237)
377 PF13479 AAA_24: AAA domain 96.8 0.0036 7.8E-08 58.9 6.9 78 149-251 3-80 (213)
378 PRK07261 topology modulation p 96.8 0.004 8.8E-08 56.3 7.0 23 151-173 2-24 (171)
379 PF13238 AAA_18: AAA domain; P 96.8 0.0012 2.6E-08 56.3 3.3 22 152-173 1-22 (129)
380 cd01394 radB RadB. The archaea 96.7 0.0065 1.4E-07 57.3 8.6 40 149-195 19-58 (218)
381 TIGR03878 thermo_KaiC_2 KaiC d 96.7 0.0089 1.9E-07 58.0 9.6 38 149-193 36-73 (259)
382 PRK12724 flagellar biosynthesi 96.7 0.039 8.4E-07 56.6 14.5 152 149-317 223-379 (432)
383 PRK13709 conjugal transfer nic 96.7 0.0088 1.9E-07 71.5 11.2 108 149-277 984-1097(1747)
384 PF13671 AAA_33: AAA domain; P 96.7 0.001 2.2E-08 58.1 2.6 22 152-173 2-23 (143)
385 cd01122 GP4d_helicase GP4d_hel 96.7 0.018 3.8E-07 56.3 11.7 75 113-206 4-79 (271)
386 PF03266 NTPase_1: NTPase; In 96.7 0.0016 3.5E-08 58.6 4.0 25 151-175 1-25 (168)
387 TIGR02788 VirB11 P-type DNA tr 96.7 0.0048 1E-07 61.5 7.4 37 136-174 133-169 (308)
388 COG1124 DppF ABC-type dipeptid 96.7 0.0036 7.9E-08 58.6 5.9 55 237-292 157-212 (252)
389 PRK14709 hypothetical protein; 96.6 0.28 6.2E-06 51.7 20.7 48 128-175 182-231 (469)
390 PRK00131 aroK shikimate kinase 96.6 0.0019 4.2E-08 58.3 4.0 27 148-174 3-29 (175)
391 cd03281 ABC_MSH5_euk MutS5 hom 96.6 0.00094 2E-08 62.8 1.9 24 149-172 29-52 (213)
392 PRK13808 adenylate kinase; Pro 96.6 0.0064 1.4E-07 60.6 7.6 23 151-173 2-24 (333)
393 COG1419 FlhF Flagellar GTP-bin 96.6 0.024 5.2E-07 57.3 11.5 150 148-314 202-355 (407)
394 cd02019 NK Nucleoside/nucleoti 96.6 0.0025 5.4E-08 48.2 3.5 22 152-173 2-23 (69)
395 TIGR01360 aden_kin_iso1 adenyl 96.6 0.007 1.5E-07 55.4 7.2 25 149-173 3-27 (188)
396 COG2805 PilT Tfp pilus assembl 96.5 0.0035 7.5E-08 60.3 5.0 53 121-176 100-152 (353)
397 cd00561 CobA_CobO_BtuR ATP:cor 96.5 0.022 4.9E-07 50.5 9.9 121 150-281 3-137 (159)
398 cd01129 PulE-GspE PulE/GspE Th 96.5 0.01 2.2E-07 57.7 8.4 27 148-174 79-105 (264)
399 TIGR01420 pilT_fam pilus retra 96.5 0.004 8.7E-08 63.1 5.7 27 148-174 121-147 (343)
400 TIGR03881 KaiC_arch_4 KaiC dom 96.5 0.02 4.3E-07 54.4 10.2 40 148-194 19-58 (229)
401 COG1643 HrpA HrpA-like helicas 96.5 0.037 8E-07 61.7 13.4 155 149-317 65-248 (845)
402 cd00984 DnaB_C DnaB helicase C 96.5 0.023 4.9E-07 54.5 10.7 50 149-206 13-62 (242)
403 TIGR01359 UMP_CMP_kin_fam UMP- 96.5 0.0021 4.6E-08 58.8 3.3 22 152-173 2-23 (183)
404 PF08303 tRNA_lig_kinase: tRNA 96.5 0.055 1.2E-06 47.8 11.8 134 153-323 3-146 (168)
405 cd01393 recA_like RecA is a b 96.5 0.018 3.9E-07 54.5 9.6 101 149-252 19-127 (226)
406 PRK03839 putative kinase; Prov 96.5 0.0026 5.7E-08 58.0 3.7 24 151-174 2-25 (180)
407 COG1936 Predicted nucleotide k 96.5 0.002 4.3E-08 57.1 2.7 22 151-173 2-23 (180)
408 TIGR00064 ftsY signal recognit 96.4 0.026 5.6E-07 55.1 10.7 43 148-197 71-113 (272)
409 PRK00625 shikimate kinase; Pro 96.4 0.0027 5.9E-08 57.5 3.7 24 151-174 2-25 (173)
410 PRK06547 hypothetical protein; 96.4 0.0045 9.7E-08 56.0 5.0 30 144-173 10-39 (172)
411 PRK10416 signal recognition pa 96.4 0.11 2.3E-06 52.0 15.1 40 149-195 114-153 (318)
412 PF00270 DEAD: DEAD/DEAH box h 96.4 0.018 3.8E-07 51.6 8.7 22 149-170 14-35 (169)
413 PRK04328 hypothetical protein; 96.4 0.029 6.3E-07 54.1 10.6 46 148-202 22-67 (249)
414 PRK09354 recA recombinase A; P 96.4 0.009 2E-07 59.9 7.2 90 149-253 60-152 (349)
415 TIGR02760 TraI_TIGR conjugativ 96.4 0.021 4.5E-07 70.1 11.5 109 148-277 1035-1147(1960)
416 cd00544 CobU Adenosylcobinamid 96.3 0.021 4.5E-07 51.5 8.7 86 152-253 2-87 (169)
417 cd00227 CPT Chloramphenicol (C 96.3 0.0037 8E-08 56.8 3.9 26 149-174 2-27 (175)
418 PRK10646 ADP-binding protein; 96.3 0.011 2.3E-07 52.1 6.5 45 128-174 9-53 (153)
419 PRK14531 adenylate kinase; Pro 96.3 0.0033 7.1E-08 57.6 3.4 24 150-173 3-26 (183)
420 TIGR02760 TraI_TIGR conjugativ 96.3 0.033 7.1E-07 68.4 12.6 113 148-277 445-564 (1960)
421 PRK07078 hypothetical protein; 96.3 0.89 1.9E-05 50.8 22.7 56 441-499 691-749 (759)
422 PF00437 T2SE: Type II/IV secr 96.3 0.0043 9.3E-08 60.7 4.3 50 124-175 104-153 (270)
423 PRK09270 nucleoside triphospha 96.3 0.0082 1.8E-07 57.1 6.1 47 129-175 8-59 (229)
424 cd00464 SK Shikimate kinase (S 96.3 0.0036 7.9E-08 55.3 3.4 24 151-174 1-24 (154)
425 PRK13900 type IV secretion sys 96.3 0.0051 1.1E-07 61.7 4.8 38 135-174 148-185 (332)
426 PRK13833 conjugal transfer pro 96.3 0.0068 1.5E-07 60.4 5.5 37 136-174 133-169 (323)
427 PRK13947 shikimate kinase; Pro 96.2 0.0034 7.4E-08 56.7 3.1 25 150-174 2-26 (171)
428 PRK12726 flagellar biosynthesi 96.2 0.14 3E-06 51.9 14.6 93 148-252 205-298 (407)
429 PF01583 APS_kinase: Adenylyls 96.2 0.0052 1.1E-07 54.3 4.1 38 149-193 2-39 (156)
430 cd01130 VirB11-like_ATPase Typ 96.2 0.0067 1.4E-07 55.7 5.0 37 136-174 14-50 (186)
431 PRK05537 bifunctional sulfate 96.2 0.0081 1.8E-07 64.8 6.2 63 111-175 356-418 (568)
432 PRK06762 hypothetical protein; 96.2 0.0044 9.5E-08 55.7 3.6 24 150-173 3-26 (166)
433 PRK04040 adenylate kinase; Pro 96.2 0.0042 9.1E-08 57.1 3.5 25 150-174 3-27 (188)
434 TIGR02782 TrbB_P P-type conjug 96.2 0.0074 1.6E-07 59.8 5.5 38 136-175 121-158 (299)
435 COG1067 LonB Predicted ATP-dep 96.2 0.038 8.2E-07 60.0 11.2 141 240-410 226-400 (647)
436 COG0541 Ffh Signal recognition 96.2 0.21 4.6E-06 50.9 15.6 146 109-265 51-207 (451)
437 PRK13851 type IV secretion sys 96.2 0.0053 1.2E-07 61.8 4.4 37 136-174 151-187 (344)
438 cd01123 Rad51_DMC1_radA Rad51_ 96.2 0.034 7.3E-07 53.0 9.8 51 149-200 19-69 (235)
439 PRK14532 adenylate kinase; Pro 96.2 0.0035 7.5E-08 57.7 2.8 23 151-173 2-24 (188)
440 PRK12727 flagellar biosynthesi 96.2 0.065 1.4E-06 56.5 12.3 43 133-175 328-376 (559)
441 COG4608 AppF ABC-type oligopep 96.2 0.014 3E-07 55.8 6.8 132 148-291 38-179 (268)
442 PLN02200 adenylate kinase fami 96.1 0.0043 9.3E-08 59.2 3.2 25 149-173 43-67 (234)
443 cd00267 ABC_ATPase ABC (ATP-bi 96.1 0.0069 1.5E-07 53.9 4.3 27 148-174 24-50 (157)
444 KOG1805 DNA replication helica 96.1 0.025 5.4E-07 62.3 9.1 49 149-205 685-733 (1100)
445 PRK14530 adenylate kinase; Pro 96.1 0.0054 1.2E-07 57.7 3.8 26 149-174 3-28 (215)
446 KOG1808 AAA ATPase containing 96.1 0.011 2.3E-07 70.1 6.6 162 131-320 423-599 (1856)
447 PRK05541 adenylylsulfate kinas 96.0 0.0071 1.5E-07 54.9 4.3 28 148-175 6-33 (176)
448 PRK05629 hypothetical protein; 96.0 1 2.2E-05 45.1 20.2 165 149-355 6-170 (318)
449 TIGR02655 circ_KaiC circadian 96.0 0.024 5.2E-07 60.3 8.7 92 148-252 262-366 (484)
450 PLN03187 meiotic recombination 96.0 0.047 1E-06 54.9 10.2 101 149-253 126-235 (344)
451 PRK06995 flhF flagellar biosyn 96.0 0.18 3.8E-06 53.1 14.8 26 149-174 256-281 (484)
452 cd02021 GntK Gluconate kinase 96.0 0.0051 1.1E-07 54.2 3.0 22 152-173 2-23 (150)
453 PF05707 Zot: Zonular occluden 96.0 0.012 2.5E-07 54.5 5.5 53 239-294 79-135 (193)
454 COG2804 PulE Type II secretory 96.0 0.022 4.7E-07 59.1 7.9 84 147-251 256-339 (500)
455 COG2401 ABC-type ATPase fused 96.0 0.0072 1.6E-07 60.6 4.1 49 238-288 524-574 (593)
456 COG1061 SSL2 DNA or RNA helica 96.0 0.041 8.9E-07 57.7 10.0 49 124-175 33-81 (442)
457 COG0563 Adk Adenylate kinase a 96.0 0.0056 1.2E-07 55.7 3.1 23 151-173 2-24 (178)
458 PRK06217 hypothetical protein; 96.0 0.0064 1.4E-07 55.7 3.5 24 151-174 3-26 (183)
459 PF13481 AAA_25: AAA domain; P 95.9 0.08 1.7E-06 48.6 10.9 47 149-195 32-81 (193)
460 PRK13949 shikimate kinase; Pro 95.9 0.0067 1.5E-07 54.8 3.4 25 150-174 2-26 (169)
461 PRK13894 conjugal transfer ATP 95.9 0.012 2.6E-07 58.8 5.5 36 136-173 137-172 (319)
462 TIGR02238 recomb_DMC1 meiotic 95.9 0.063 1.4E-06 53.5 10.6 101 149-253 96-205 (313)
463 TIGR01313 therm_gnt_kin carboh 95.9 0.005 1.1E-07 55.1 2.5 22 152-173 1-22 (163)
464 PRK14527 adenylate kinase; Pro 95.9 0.0071 1.5E-07 55.8 3.6 27 148-174 5-31 (191)
465 PRK08233 hypothetical protein; 95.9 0.0064 1.4E-07 55.4 3.2 26 149-174 3-28 (182)
466 PRK00889 adenylylsulfate kinas 95.9 0.012 2.6E-07 53.4 4.9 39 148-193 3-41 (175)
467 PRK00279 adk adenylate kinase; 95.9 0.0072 1.6E-07 56.9 3.6 24 151-174 2-25 (215)
468 cd01428 ADK Adenylate kinase ( 95.9 0.0056 1.2E-07 56.4 2.8 23 151-173 1-23 (194)
469 PF02367 UPF0079: Uncharacteri 95.9 0.01 2.3E-07 50.1 4.2 38 135-174 3-40 (123)
470 cd03214 ABC_Iron-Siderophores_ 95.9 0.015 3.2E-07 53.1 5.5 26 148-173 24-49 (180)
471 cd02020 CMPK Cytidine monophos 95.9 0.0075 1.6E-07 52.7 3.4 23 152-174 2-24 (147)
472 TIGR02322 phosphon_PhnN phosph 95.8 0.0082 1.8E-07 54.7 3.5 25 150-174 2-26 (179)
473 cd03222 ABC_RNaseL_inhibitor T 95.8 0.013 2.8E-07 53.3 4.7 27 147-173 23-49 (177)
474 cd03287 ABC_MSH3_euk MutS3 hom 95.8 0.0062 1.4E-07 57.5 2.7 24 148-171 30-53 (222)
475 cd01878 HflX HflX subfamily. 95.8 0.12 2.5E-06 48.0 11.3 24 149-172 41-64 (204)
476 PRK14721 flhF flagellar biosyn 95.8 0.24 5.1E-06 51.3 14.3 25 149-173 191-215 (420)
477 PTZ00088 adenylate kinase 1; P 95.8 0.0085 1.8E-07 56.9 3.5 26 149-174 6-31 (229)
478 PRK11131 ATP-dependent RNA hel 95.8 0.092 2E-06 61.1 12.4 24 149-172 89-112 (1294)
479 PRK10436 hypothetical protein; 95.8 0.042 9.1E-07 57.6 8.9 27 148-174 217-243 (462)
480 PRK06851 hypothetical protein; 95.7 0.021 4.6E-07 57.7 6.4 40 149-195 214-253 (367)
481 KOG0920 ATP-dependent RNA heli 95.7 0.25 5.4E-06 55.4 14.9 157 149-321 188-363 (924)
482 PLN02459 probable adenylate ki 95.7 0.0063 1.4E-07 58.5 2.4 27 147-173 27-53 (261)
483 PRK05986 cob(I)alamin adenolsy 95.7 0.14 3.1E-06 46.7 11.1 27 148-174 21-47 (191)
484 COG0529 CysC Adenylylsulfate k 95.7 0.019 4.2E-07 51.1 5.2 33 144-176 18-50 (197)
485 PF13521 AAA_28: AAA domain; P 95.7 0.0085 1.8E-07 53.7 3.1 21 152-172 2-22 (163)
486 smart00178 SAR Sar1p-like memb 95.7 0.05 1.1E-06 49.7 8.3 25 147-171 15-39 (184)
487 PLN02674 adenylate kinase 95.7 0.017 3.7E-07 55.1 5.3 26 148-173 30-55 (244)
488 PRK02496 adk adenylate kinase; 95.7 0.0096 2.1E-07 54.5 3.4 24 151-174 3-26 (184)
489 PRK14528 adenylate kinase; Pro 95.7 0.011 2.3E-07 54.4 3.7 24 150-173 2-25 (186)
490 TIGR02538 type_IV_pilB type IV 95.7 0.042 9.1E-07 59.5 8.8 41 129-174 301-341 (564)
491 PF00406 ADK: Adenylate kinase 95.6 0.0074 1.6E-07 53.3 2.5 20 154-173 1-20 (151)
492 COG0467 RAD55 RecA-superfamily 95.6 0.025 5.3E-07 55.0 6.3 49 148-205 22-70 (260)
493 TIGR00376 DNA helicase, putati 95.6 0.02 4.4E-07 62.7 6.2 27 149-175 173-199 (637)
494 COG5192 BMS1 GTP-binding prote 95.6 0.036 7.9E-07 57.4 7.4 31 148-178 67-98 (1077)
495 COG0703 AroK Shikimate kinase 95.6 0.011 2.5E-07 52.7 3.4 26 149-174 2-27 (172)
496 PF13555 AAA_29: P-loop contai 95.6 0.02 4.3E-07 42.0 4.1 25 150-174 24-48 (62)
497 PRK08154 anaerobic benzoate ca 95.6 0.019 4.2E-07 57.2 5.4 44 131-174 111-158 (309)
498 COG0802 Predicted ATPase or ki 95.6 0.03 6.6E-07 48.6 5.8 46 127-174 5-50 (149)
499 COG0552 FtsY Signal recognitio 95.6 0.059 1.3E-06 53.0 8.5 97 148-254 138-236 (340)
500 TIGR01587 cas3_core CRISPR-ass 95.6 0.034 7.3E-07 56.7 7.3 21 152-172 2-22 (358)
No 1
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=4.5e-61 Score=470.52 Aligned_cols=449 Identities=40% Similarity=0.585 Sum_probs=375.8
Q ss_pred CCCCCCCcCCCC--------CCcCCCCCCCCCcchhhhHHHHhhhhcCCCchhhhhhhhccCCCCCCCChhHHHHHHhhc
Q 010136 46 SPISTPMKLKPP--------RRCVNSSPNSGANGIEMEINEKLMSARKSPVKKKLCDSFKSKPNWNPQDVEQMSAVREAL 117 (517)
Q Consensus 46 ~~~~~p~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 117 (517)
.|.++|.|+|.. +++..++|++.......+.|+.+++..-.. ...-.+.......|+|.+.+.-..+.+.+
T Consensus 65 ~p~s~P~k~K~~~~P~~~~~~rl~~~~~kt~~~~ske~ln~~~~np~~~~-~~~p~r~~s~~~~~~p~~ke~~~~~~~~l 143 (529)
T KOG2227|consen 65 PPLSSPEKLKLGLSPGHSDRRRLIISRPKTIKQESKEDLNKQLENPVDPE-GSLPARTASYETPMNPSAKEISEQRSESL 143 (529)
T ss_pred CCCCCHHHhccCCCCCCCCcccccccchhhhcccChhHHhhhhcCCCccc-ccCchhhcCcccCCCcccHHHHHHHHHHH
Confidence 577788888888 777778888777666666665544443211 22122233334456777777888888888
Q ss_pred CcCCCCCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCC
Q 010136 118 HVSTAPSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTN 197 (517)
Q Consensus 118 ~~~~~p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s 197 (517)
...+.|..++||+.|+..+..|+..++....++++|++|.||||||.+...++..+..+.. .+.++|+||++++.
T Consensus 144 ~~t~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~-----~~~~v~inc~sl~~ 218 (529)
T KOG2227|consen 144 LNTAPPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSK-----SPVTVYINCTSLTE 218 (529)
T ss_pred HhcCCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcc-----cceeEEEeeccccc
Confidence 8999999999999999999999999999999999999999999999999999988887653 25689999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEE
Q 010136 198 TSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIG 277 (517)
Q Consensus 198 ~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ 277 (517)
+..+|..|+..+......... ...+...|..+.. ....+.||++||+|+|..+.+.+||.||+|+..+++++++||
T Consensus 219 ~~aiF~kI~~~~~q~~~s~~~---~~~~~~~~~~h~~-q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiG 294 (529)
T KOG2227|consen 219 ASAIFKKIFSSLLQDLVSPGT---GMQHLEKFEKHTK-QSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIG 294 (529)
T ss_pred hHHHHHHHHHHHHHHhcCCch---hHHHHHHHHHHHh-cccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeee
Confidence 999999999998433322111 2444455554443 234789999999999999999999999999999999999999
Q ss_pred EECCCCcchhhccccccc-CCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHH
Q 010136 278 IANAIDLADRFLPRLQSM-NCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRS 356 (517)
Q Consensus 278 ian~~~~~~~l~~~l~sr-~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~ 356 (517)
++|.+|+.++++|+|..+ .+.+..+.|+||+.+|+.+||.+|+.......|-+.++++||+++++.+||+|+|+++|++
T Consensus 295 iANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ 374 (529)
T KOG2227|consen 295 IANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRR 374 (529)
T ss_pred ehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 999999999999999994 5789999999999999999999999977777788899999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccChhHHHhccCCHHHHHHHHHHHHHH
Q 010136 357 AIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSPVVDTIKSLPQHQQILLCSAVKFF 436 (517)
Q Consensus 357 A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~~~~~i~~L~~~~k~iL~al~~l~ 436 (517)
|+++|+.+.+...+.... ....|+. .+.|.++||..+++.++.++......+||.||+++||.++.++
T Consensus 375 aiEI~E~e~r~~~~~~l~---~~~~p~~---------~~~v~~~~va~viSk~~~s~~~~s~~slplqqkiilctl~~l~ 442 (529)
T KOG2227|consen 375 AIEIAEIEKRKILDDPLS---PGTSPEK---------KKKVGVEHVAAVISKVDGSPSARSRESLPLQQKIILCTLVLLI 442 (529)
T ss_pred HHHHHHHHHhhccccCCC---CCCCccc---------ccccchHHHHHHhhhhccChhhhhhhhcCcccchhHHHHHHHH
Confidence 999999998874211110 0011111 0379999999999999999988888899999999999999999
Q ss_pred hcCCCCccHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhcCceeec--cCCceeEEEeecCHHHHHHHHhCChhhhh
Q 010136 437 RGGKKDMTVGELNKSYMNICKTSLIPPVGTLEFFSMCRVLHDQGVLKVG--RDDKLKRVTLKADESDITFALQGVRFFRN 514 (517)
Q Consensus 437 ~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~L~~~glI~~~--~~~~~~~~~l~~~~~~i~~~l~~~~~~~~ 514 (517)
++.+.+++++++|+.|.++|+...+.|++.+||..+|+.|+++||+.+. +.++.++|.|.||++||+.||.+...+..
T Consensus 443 r~~kkd~s~~eL~e~Y~k~C~~~~I~~ld~tEF~~i~~ilet~gil~l~~~k~~kl~kv~l~vde~~i~~Al~D~~l~~~ 522 (529)
T KOG2227|consen 443 RGNKKDVSIAELYEAYLKACQKREIAPLDRTEFLSICDILETQGILRLRRKKEPKLKKVVLQVDEDDIMRALSDKALLIS 522 (529)
T ss_pred hcccccccHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHhhhHHHHhhhcCCccceEEEecchHHHHHHHhHHHHHHH
Confidence 8877899999999999999999999999999999999999999999877 68999999999999999999999988877
Q ss_pred hc
Q 010136 515 CL 516 (517)
Q Consensus 515 ~~ 516 (517)
+|
T Consensus 523 il 524 (529)
T KOG2227|consen 523 IL 524 (529)
T ss_pred hc
Confidence 65
No 2
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=100.00 E-value=9.2e-53 Score=440.28 Aligned_cols=373 Identities=27% Similarity=0.406 Sum_probs=323.0
Q ss_pred hHHHHHHhhcCcCCCCCCCCCcHHHHHHHHHHHHHhhccCCCCe-EEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCce
Q 010136 108 EQMSAVREALHVSTAPSTIVCREDEQKKVLEFCKKNLEEEKAGS-LYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPE 186 (517)
Q Consensus 108 ~~~~~~~~~l~~~~~p~~l~gRe~e~~~l~~~L~~~l~~~~~~~-lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~ 186 (517)
+.+..|+.+|+++|+|+.|+|||+|+++|..+|..++.+..+++ +||+|+||||||++++.|+++|.+.....+.+.+.
T Consensus 739 ~p~~~A~rvL~~DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~ 818 (1164)
T PTZ00112 739 DPTDKAIRMMQLDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFN 818 (1164)
T ss_pred ChHHHHHHHcCcccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCce
Confidence 35678999999999999999999999999999999998666554 68999999999999999999998777666766689
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccC
Q 010136 187 VFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLT 266 (517)
Q Consensus 187 ~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~ 266 (517)
++||||+.+.+++.+|..|+.+|.+..+ ..+....+.+..+|.... .......||||||||.|....+++||.|++|.
T Consensus 819 vVYINCm~Lstp~sIYqvI~qqL~g~~P-~~GlsS~evLerLF~~L~-k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~ 896 (1164)
T PTZ00112 819 VFEINGMNVVHPNAAYQVLYKQLFNKKP-PNALNSFKILDRLFNQNK-KDNRNVSILIIDEIDYLITKTQKVLFTLFDWP 896 (1164)
T ss_pred EEEEeCCccCCHHHHHHHHHHHHcCCCC-CccccHHHHHHHHHhhhh-cccccceEEEeehHhhhCccHHHHHHHHHHHh
Confidence 9999999999999999999999965543 345555677888876321 22345679999999999988889999999998
Q ss_pred CCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCC
Q 010136 267 TFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGD 346 (517)
Q Consensus 267 ~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd 346 (517)
....++++||||+|+++++++++++++|| +...+|.|+||+.+|+.+||..|+... ...++++++++||++++..+||
T Consensus 897 ~~s~SKLiLIGISNdlDLperLdPRLRSR-Lg~eeIvF~PYTaEQL~dILk~RAe~A-~gVLdDdAIELIArkVAq~SGD 974 (1164)
T PTZ00112 897 TKINSKLVLIAISNTMDLPERLIPRCRSR-LAFGRLVFSPYKGDEIEKIIKERLENC-KEIIDHTAIQLCARKVANVSGD 974 (1164)
T ss_pred hccCCeEEEEEecCchhcchhhhhhhhhc-cccccccCCCCCHHHHHHHHHHHHHhC-CCCCCHHHHHHHHHhhhhcCCH
Confidence 77788999999999999999999999999 777789999999999999999999854 3689999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccChhHHHhccCCHHHH
Q 010136 347 MRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSPVVDTIKSLPQHQQ 426 (517)
Q Consensus 347 ~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~~~~~i~~L~~~~k 426 (517)
+|+||++|+.|++++. .. .|+.+||.+|+.+++.+++.+.|.+||.|+|
T Consensus 975 ARKALDILRrAgEike---gs----------------------------kVT~eHVrkAleeiE~srI~e~IktLPlHqK 1023 (1164)
T PTZ00112 975 IRKALQICRKAFENKR---GQ----------------------------KIVPRDITEATNQLFDSPLTNAINYLPWPFK 1023 (1164)
T ss_pred HHHHHHHHHHHHhhcC---CC----------------------------ccCHHHHHHHHHHHHhhhHHHHHHcCCHHHH
Confidence 9999999999998631 11 6999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-CCCCccHHHHHHHHHHHHH----hcCCCCCChHHHHHHHHHHhhcCceeec----------------
Q 010136 427 ILLCSAVKFFRG-GKKDMTVGELNKSYMNICK----TSLIPPVGTLEFFSMCRVLHDQGVLKVG---------------- 485 (517)
Q Consensus 427 ~iL~al~~l~~~-~~~~~~~~~l~~~y~~~~~----~~~~~~~~~~~~~~~~~~L~~~glI~~~---------------- 485 (517)
++|+|++.+... +...+++++||+.|..+|+ .+++.|+++ .|..++.+|..+|||-+.
T Consensus 1024 LVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~iGv~plTq-RV~d~L~eL~~LGIIl~ep~~~~~~~~~~~~~~~ 1102 (1164)
T PTZ00112 1024 MFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYIGMCSNNE-LFKIMLDKLVKMGILLIRPYIPLESLAKNKNKEA 1102 (1164)
T ss_pred HHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhcCCCCcHH-HHHHHHHHHHhcCeEEecCCCchhhhhcccchhh
Confidence 999999988765 4547999999999999999 667899999 999999999999999743
Q ss_pred ---------c---CC-c---------------eeEEEeecCHHHHHHHHhCChhhhhhc
Q 010136 486 ---------R---DD-K---------------LKRVTLKADESDITFALQGVRFFRNCL 516 (517)
Q Consensus 486 ---------~---~~-~---------------~~~~~l~~~~~~i~~~l~~~~~~~~~~ 516 (517)
+ .+ + -+-+.|+++...|..||-+||++..-|
T Consensus 1103 ~~~~~~~~~~~~~~~~k~~~~~v~~~i~~~~gd~g~~~~~~~~~~~tal~~d~~~~~~l 1161 (1164)
T PTZ00112 1103 LLGFNESSKKNANETSKSTRTQVSAEIDKESGDMGLELNVETQLIITALMKDAECSQKL 1161 (1164)
T ss_pred hhcccchhccccCccccccccccchhhhhhccccceeeeccHhHHHHHHhhCHhHHhhc
Confidence 0 00 0 123789999999999999999987644
No 3
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=100.00 E-value=7.6e-52 Score=422.81 Aligned_cols=380 Identities=29% Similarity=0.460 Sum_probs=337.2
Q ss_pred hHHHHHHhhcCcCCCCCCCCCcHHHHHHHHHHHHHhhcc-CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCce
Q 010136 108 EQMSAVREALHVSTAPSTIVCREDEQKKVLEFCKKNLEE-EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPE 186 (517)
Q Consensus 108 ~~~~~~~~~l~~~~~p~~l~gRe~e~~~l~~~L~~~l~~-~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~ 186 (517)
..++.+++.|+.+.+|+.|+|||.|+.+|..|+..++.. +.+.++||+|.||||||++++.|.++|.....+...+.|.
T Consensus 380 S~l~~ara~Lhls~vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~ 459 (767)
T KOG1514|consen 380 SELSKARARLHLSAVPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD 459 (767)
T ss_pred hHHHHHHHHhHHhhccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc
Confidence 457889999999999999999999999999999999987 4566999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccC
Q 010136 187 VFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLT 266 (517)
Q Consensus 187 ~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~ 266 (517)
|++||++.+.++.++|..||.++.+....+. ...+.|...|. .......++||+|||.|.|.++.|++||++|+|+
T Consensus 460 yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~--~al~~L~~~f~--~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWp 535 (767)
T KOG1514|consen 460 YVEINGLRLASPREIYEKIWEALSGERVTWD--AALEALNFRFT--VPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWP 535 (767)
T ss_pred EEEEcceeecCHHHHHHHHHHhcccCcccHH--HHHHHHHHhhc--cCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCC
Confidence 9999999999999999999999988776542 33677888886 4456778899999999999999999999999999
Q ss_pred CCCCCcEEEEEEECCCCcchhhcc-cccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhC
Q 010136 267 TFPFSRFILIGIANAIDLADRFLP-RLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASG 345 (517)
Q Consensus 267 ~~~~~~v~lI~ian~~~~~~~l~~-~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~G 345 (517)
..++++++||+++|++|++++++. ++-|| ++..+|.|.||+++|+.+|+..||.++ ..|..++++++|+++++.+|
T Consensus 536 t~~~sKLvvi~IaNTmdlPEr~l~nrvsSR-lg~tRi~F~pYth~qLq~Ii~~RL~~~--~~f~~~aielvarkVAavSG 612 (767)
T KOG1514|consen 536 TLKNSKLVVIAIANTMDLPERLLMNRVSSR-LGLTRICFQPYTHEQLQEIISARLKGL--DAFENKAIELVARKVAAVSG 612 (767)
T ss_pred cCCCCceEEEEecccccCHHHHhccchhhh-ccceeeecCCCCHHHHHHHHHHhhcch--hhcchhHHHHHHHHHHhccc
Confidence 999999999999999999999865 88888 888999999999999999999999987 68999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccChhHHHhccCCHHH
Q 010136 346 DMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSPVVDTIKSLPQHQ 425 (517)
Q Consensus 346 d~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~~~~~i~~L~~~~ 425 (517)
|+|+|+++|++|.++|..+...... . . ...|++.||.+|+++++.++....+++|+.+|
T Consensus 613 DaRraldic~RA~Eia~~~~~~~k~-------~--~------------~q~v~~~~v~~Ai~em~~~~~~~~i~glS~~~ 671 (767)
T KOG1514|consen 613 DARRALDICRRAAEIAEERNVKGKL-------A--V------------SQLVGILHVMEAINEMLASPYIKALKGLSFLQ 671 (767)
T ss_pred cHHHHHHHHHHHHHHhhhhcccccc-------c--c------------cceeehHHHHHHHHHHhhhhHHHHhcchHHHH
Confidence 9999999999999999887652100 0 0 11799999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-CCCCccHHHHHHHHHHHHHhcCCCCCChHHHHHHH--HHHhhcCceeec--cCCceeEEEeecCHH
Q 010136 426 QILLCSAVKFFRG-GKKDMTVGELNKSYMNICKTSLIPPVGTLEFFSMC--RVLHDQGVLKVG--RDDKLKRVTLKADES 500 (517)
Q Consensus 426 k~iL~al~~l~~~-~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~--~~L~~~glI~~~--~~~~~~~~~l~~~~~ 500 (517)
+++|+|++...++ +..+.++.+||..|..+|+..+-.-.+...+..+| +.|...+|+-.. +..+..+++|+++..
T Consensus 672 k~fl~ai~~e~~~~g~~e~~~~~v~~~~~~i~~~~~~~~~~~~~~~~i~~~~~l~~e~l~l~~~~~~~r~~~v~L~~~~~ 751 (767)
T KOG1514|consen 672 KIFLTAIVAETEGTGLEEATLDEVYSEVVTICRKNGGPKPSSDIAKVICGVNDLGSERLVLVEPEENDRSLRVKLNIPSD 751 (767)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHhhhhccccceEEEecCccchhhhhhcCCCHH
Confidence 9999999998876 77889999999999999998865444444455556 777777777554 677899999999999
Q ss_pred HHHHHHhCChhhhhh
Q 010136 501 DITFALQGVRFFRNC 515 (517)
Q Consensus 501 ~i~~~l~~~~~~~~~ 515 (517)
|+..||++|..|+++
T Consensus 752 ei~~A~~~d~e~~~~ 766 (767)
T KOG1514|consen 752 EIKYALKDDEELANM 766 (767)
T ss_pred HHHHHhhcchhhccC
Confidence 999999999999876
No 4
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-50 Score=405.77 Aligned_cols=355 Identities=28% Similarity=0.391 Sum_probs=317.0
Q ss_pred HHHHhhcCcCCCCCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEE
Q 010136 111 SAVREALHVSTAPSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSI 190 (517)
Q Consensus 111 ~~~~~~l~~~~~p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~v 190 (517)
+.+++.|.++|+|+.+++|+.|++++..+|.+.+.++.+.+++|+|+||||||++++.+++++.+.... ..++||
T Consensus 4 ~~n~~vl~~~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~-----~~~~yI 78 (366)
T COG1474 4 FKNKDVLLEDYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSAN-----VEVVYI 78 (366)
T ss_pred cccccccCCCCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhcc-----CceEEE
Confidence 456778999999999999999999999999999999999999999999999999999999999876432 238999
Q ss_pred eCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCC
Q 010136 191 NCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPF 270 (517)
Q Consensus 191 n~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~ 270 (517)
||..+.+++++|..|+.+++. .+..|.+..+.+..+++ . ....+...||+|||+|.|..+.++.||.|++|.....
T Consensus 79 Nc~~~~t~~~i~~~i~~~~~~--~p~~g~~~~~~~~~l~~-~-~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~ 154 (366)
T COG1474 79 NCLELRTPYQVLSKILNKLGK--VPLTGDSSLEILKRLYD-N-LSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENK 154 (366)
T ss_pred eeeeCCCHHHHHHHHHHHcCC--CCCCCCchHHHHHHHHH-H-HHhcCCeEEEEEcchhhhccccchHHHHHHhhccccc
Confidence 999999999999999999972 22234444444444443 1 2246788999999999999988899999999987778
Q ss_pred CcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHh-hhccCCCChhHHHHHHHHHHHHhCCHHH
Q 010136 271 SRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLM-ELSYIVFQPQALELCARKVAAASGDMRK 349 (517)
Q Consensus 271 ~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~-~~~~~~~~~~ai~~ia~~~~~~~Gd~R~ 349 (517)
+++++|+++|+.++.+.++++++|+ +++..|.|+||+.+|+.+||..|++ ++....++++++++||..++..+||+|+
T Consensus 155 ~~v~vi~i~n~~~~~~~ld~rv~s~-l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~ 233 (366)
T COG1474 155 VKVSIIAVSNDDKFLDYLDPRVKSS-LGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARK 233 (366)
T ss_pred eeEEEEEEeccHHHHHHhhhhhhhc-cCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHH
Confidence 9999999999999999999999999 7888999999999999999999998 6888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccChhHHHhccCCHHHHHHH
Q 010136 350 ALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSPVVDTIKSLPQHQQILL 429 (517)
Q Consensus 350 al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~~~~~i~~L~~~~k~iL 429 (517)
|+++|+.|+++|+.++.. .|+.+|+.+|..++......+.++.||.|+|++|
T Consensus 234 aidilr~A~eiAe~~~~~----------------------------~v~~~~v~~a~~~~~~~~~~~~~~~L~~~~ki~L 285 (366)
T COG1474 234 AIDILRRAGEIAEREGSR----------------------------KVSEDHVREAQEEIERDVLEEVLKTLPLHQKIVL 285 (366)
T ss_pred HHHHHHHHHHHHHhhCCC----------------------------CcCHHHHHHHHHHhhHHHHHHHHHcCCHhHHHHH
Confidence 999999999999998877 8999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhcCceeec-----cCCceeEEEeecCHHHHHH
Q 010136 430 CSAVKFFRGGKKDMTVGELNKSYMNICKTSLIPPVGTLEFFSMCRVLHDQGVLKVG-----RDDKLKRVTLKADESDITF 504 (517)
Q Consensus 430 ~al~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~L~~~glI~~~-----~~~~~~~~~l~~~~~~i~~ 504 (517)
++++... ..++++++|+.|..+|+..+. ++.+|.++++.|+.+|+|... .+|+.+.+.+..+++.+..
T Consensus 286 ~~i~~~~----~~~~~~~~y~~y~~~~~~~~~---~~~~~~~ii~~L~~lgiv~~~~~~~g~~g~~~~i~~~~~~~~~~~ 358 (366)
T COG1474 286 LAIVELT----VEISTGELYDVYESLCERLRT---SQRRFSDIISELEGLGIVSASLISRGERGRTREISLDLDPEVIRE 358 (366)
T ss_pred HHHHHhc----CCCChHHHHHHHHHHHhhhCc---hHHHHHHHHHHHHhcCeEEeeeccCCCcCceeEeeecCCHHHHHH
Confidence 9998764 678999999999999999877 889999999999999999865 4678899999999988888
Q ss_pred HHhCCh
Q 010136 505 ALQGVR 510 (517)
Q Consensus 505 ~l~~~~ 510 (517)
++..+.
T Consensus 359 ~~~~~~ 364 (366)
T COG1474 359 ILKLDL 364 (366)
T ss_pred HHHhhh
Confidence 887653
No 5
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=100.00 E-value=2.2e-48 Score=402.17 Aligned_cols=370 Identities=22% Similarity=0.347 Sum_probs=318.3
Q ss_pred HHHHHhhcCcCCCCCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEE
Q 010136 110 MSAVREALHVSTAPSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFS 189 (517)
Q Consensus 110 ~~~~~~~l~~~~~p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~ 189 (517)
++..+..|+++++|+.++||++|+++|..++...+.+..+++++|+||||||||++++.+++++.... +.+.+++
T Consensus 16 ~~~~~~~l~~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-----~~~~~v~ 90 (394)
T PRK00411 16 IFKDEEVLEPDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA-----VKVVYVY 90 (394)
T ss_pred eeCChhhCCCCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc-----CCcEEEE
Confidence 66778889999999999999999999999999988877888999999999999999999999886532 2367999
Q ss_pred EeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhc-ccCchHHHHHhccC-C
Q 010136 190 INCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLI-TRDRAVLHDLFMLT-T 267 (517)
Q Consensus 190 vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~-~~~~~~L~~l~~~~-~ 267 (517)
+||....+.+.++..++.++.+......+.+..+.+..+.. .....+.+.||+|||+|.+. ...++.|+.++++. .
T Consensus 91 in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~ 168 (394)
T PRK00411 91 INCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAE--YLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE 168 (394)
T ss_pred EECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHH--HHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc
Confidence 99999999999999999999764333334343333333332 12235667999999999998 44578899998864 3
Q ss_pred CCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHh-hhccCCCChhHHHHHHHHHHHHhCC
Q 010136 268 FPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLM-ELSYIVFQPQALELCARKVAAASGD 346 (517)
Q Consensus 268 ~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~-~~~~~~~~~~ai~~ia~~~~~~~Gd 346 (517)
....++.+|+++|+.++.+.+++++.++ +....|.|+||+.+|+.+|++.++. ++....++++++++|++.++..+||
T Consensus 169 ~~~~~v~vI~i~~~~~~~~~l~~~~~s~-~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd 247 (394)
T PRK00411 169 YPGARIGVIGISSDLTFLYILDPRVKSV-FRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGD 247 (394)
T ss_pred cCCCeEEEEEEECCcchhhhcCHHHHhc-CCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCc
Confidence 3455899999999999888889999998 7778999999999999999999986 4445678999999999999888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccChhHHHhccCCHHHH
Q 010136 347 MRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSPVVDTIKSLPQHQQ 426 (517)
Q Consensus 347 ~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~~~~~i~~L~~~~k 426 (517)
+|.|+++|+.|+++|..++.. .|+.+||.+|+..+..+.....+.+||.+||
T Consensus 248 ~r~a~~ll~~a~~~a~~~~~~----------------------------~I~~~~v~~a~~~~~~~~~~~~~~~L~~~~k 299 (394)
T PRK00411 248 ARVAIDLLRRAGLIAEREGSR----------------------------KVTEEDVRKAYEKSEIVHLSEVLRTLPLHEK 299 (394)
T ss_pred HHHHHHHHHHHHHHHHHcCCC----------------------------CcCHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 999999999999998876655 7999999999999988888899999999999
Q ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhcCceeec-----cCCceeEEEeecCHHH
Q 010136 427 ILLCSAVKFFRGGKKDMTVGELNKSYMNICKTSLIPPVGTLEFFSMCRVLHDQGVLKVG-----RDDKLKRVTLKADESD 501 (517)
Q Consensus 427 ~iL~al~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~L~~~glI~~~-----~~~~~~~~~l~~~~~~ 501 (517)
++|+||+.+.+.+...++++++|+.|..+|+.++++|+++++|+++|+.|+++|||... ++|+++.|+|.+++++
T Consensus 300 ~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~~~~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~~~~~~ 379 (394)
T PRK00411 300 LLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEPRTHTRFYEYINKLDMLGIINTRYSGKGGRGRTRLISLSYDPED 379 (394)
T ss_pred HHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEecCCHHH
Confidence 99999998875444579999999999999999999999999999999999999999853 5789999999999999
Q ss_pred HHHHHhCChhhhhh
Q 010136 502 ITFALQGVRFFRNC 515 (517)
Q Consensus 502 i~~~l~~~~~~~~~ 515 (517)
|.+++..++.|+.+
T Consensus 380 ~~~~~~~~~~~~~~ 393 (394)
T PRK00411 380 VLERLLEDYILKRL 393 (394)
T ss_pred HHHHHHhhhhhhhc
Confidence 99999999988753
No 6
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=100.00 E-value=7.2e-48 Score=394.35 Aligned_cols=353 Identities=22% Similarity=0.366 Sum_probs=301.8
Q ss_pred HHHHhhcCcCCCCCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEE
Q 010136 111 SAVREALHVSTAPSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSI 190 (517)
Q Consensus 111 ~~~~~~l~~~~~p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~v 190 (517)
+..++.|+++|+|+.++||++|++.|..+|..++.+..+++++|+||||||||++++.+++++.+.....+.+ +.++++
T Consensus 2 ~~~~~~l~~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~-~~~v~i 80 (365)
T TIGR02928 2 FRNRDLLEPDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVR-VVTVYV 80 (365)
T ss_pred cCChhhCCCCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCc-eEEEEE
Confidence 4567899999999999999999999999999988877888999999999999999999999987655443443 689999
Q ss_pred eCCCCCCHHHHHHHHHHHhCC--CCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhcc---
Q 010136 191 NCTSLTNTSEIFSKILLKLQP--RKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFML--- 265 (517)
Q Consensus 191 n~~~~~s~~~i~~~i~~~l~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~--- 265 (517)
||....+.+.++..|+.++.. ......+.+..+.+..++.. .....++.||+|||+|.|....++.|+.|++|
T Consensus 81 n~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~--l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~ 158 (365)
T TIGR02928 81 NCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKE--LNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSN 158 (365)
T ss_pred ECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHH--HHhcCCeEEEEECchhhhccCCcHHHHhHhccccc
Confidence 999999999999999999952 22222233333444444431 22345678999999999986667889999988
Q ss_pred CCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHh-hhccCCCChhHHHHHHHHHHHHh
Q 010136 266 TTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLM-ELSYIVFQPQALELCARKVAAAS 344 (517)
Q Consensus 266 ~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~-~~~~~~~~~~ai~~ia~~~~~~~ 344 (517)
...++.++.+|+++|..++.+.+++++.++ |.+..+.|+||+.+|+.+||..++. ++....+++++++++++.++...
T Consensus 159 ~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~-~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~ 237 (365)
T TIGR02928 159 GDLDNAKVGVIGISNDLKFRENLDPRVKSS-LCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEH 237 (365)
T ss_pred cCCCCCeEEEEEEECCcchHhhcCHHHhcc-CCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhc
Confidence 344557899999999998888899999998 7777999999999999999999997 55556799999999999888889
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccChhHHHhccCCHH
Q 010136 345 GDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSPVVDTIKSLPQH 424 (517)
Q Consensus 345 Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~~~~~i~~L~~~ 424 (517)
||+|.|+++|+.|+++|..++.. .|+.+||.+|++.+..+...+.+.+||.+
T Consensus 238 Gd~R~al~~l~~a~~~a~~~~~~----------------------------~it~~~v~~a~~~~~~~~~~~~i~~l~~~ 289 (365)
T TIGR02928 238 GDARKAIDLLRVAGEIAEREGAE----------------------------RVTEDHVEKAQEKIEKDRLLELIRGLPTH 289 (365)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCC----------------------------CCCHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999876654 79999999999999888889999999999
Q ss_pred HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhcCceeec-----cCCceeEEEe
Q 010136 425 QQILLCSAVKFFRGGKKDMTVGELNKSYMNICKTSLIPPVGTLEFFSMCRVLHDQGVLKVG-----RDDKLKRVTL 495 (517)
Q Consensus 425 ~k~iL~al~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~L~~~glI~~~-----~~~~~~~~~l 495 (517)
++++|++++.+...+...++++++|+.|..+|+..+++|+++++|.++|+.|+.+|||+.. ++|+++.|+|
T Consensus 290 ~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~l~~~gli~~~~~~~g~~g~~~~~~~ 365 (365)
T TIGR02928 290 SKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDIGVDPLTQRRISDLLNELDMLGLVEAEERNKGRGGRTREYSL 365 (365)
T ss_pred HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCeEEEEEcCCCCCcEEEEeC
Confidence 9999999999887666779999999999999999999999999999999999999999865 5778877764
No 7
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.1e-26 Score=220.23 Aligned_cols=258 Identities=17% Similarity=0.158 Sum_probs=195.2
Q ss_pred hhhhccCCCCCCCChhHHHHHHhhcCcCCCCCCCCCcHHHHHHHHHHHHHhhccCC--CCeEEEEcCCCCcHHHHHHHHH
Q 010136 93 CDSFKSKPNWNPQDVEQMSAVREALHVSTAPSTIVCREDEQKKVLEFCKKNLEEEK--AGSLYVCGCPGTGKSLSMEKVQ 170 (517)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~l~gRe~e~~~l~~~L~~~l~~~~--~~~lli~G~pGtGKT~l~~~v~ 170 (517)
++.+.+.|+..|+|+..+..++++|++..+ +.-++-.++++.. -.++|++||||||||+||++|+
T Consensus 200 rdIl~~np~ikW~DIagl~~AK~lL~EAVv-------------lPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvA 266 (491)
T KOG0738|consen 200 RDILQRNPNIKWDDIAGLHEAKKLLKEAVV-------------LPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVA 266 (491)
T ss_pred HHHhccCCCcChHhhcchHHHHHHHHHHHh-------------hhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHH
Confidence 667788899999999999999999988765 4445555555443 4589999999999999999999
Q ss_pred HHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcch
Q 010136 171 HYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDY 250 (517)
Q Consensus 171 ~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~ 250 (517)
.+++ ..|+.|+.+.+.+++. |.+ ++.++-+|+ +++.+.|.+|||||||.
T Consensus 267 TEc~----------tTFFNVSsstltSKwR-----------------GeS-EKlvRlLFe---mARfyAPStIFiDEIDs 315 (491)
T KOG0738|consen 267 TECG----------TTFFNVSSSTLTSKWR-----------------GES-EKLVRLLFE---MARFYAPSTIFIDEIDS 315 (491)
T ss_pred Hhhc----------CeEEEechhhhhhhhc-----------------cch-HHHHHHHHH---HHHHhCCceeehhhHHH
Confidence 9986 3799999999888776 555 788888887 66788999999999999
Q ss_pred hcccCc------------hHHHHHhccC--CCCCCc-EEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHH
Q 010136 251 LITRDR------------AVLHDLFMLT--TFPFSR-FILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRI 315 (517)
Q Consensus 251 L~~~~~------------~~L~~l~~~~--~~~~~~-v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~I 315 (517)
|+..+. ..|...++-. ...+.+ |.|+++|| ++|.|+.++++| |. .+|+++-++.+....+
T Consensus 316 lcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN---~PWdiDEAlrRR-lE-KRIyIPLP~~~~R~~L 390 (491)
T KOG0738|consen 316 LCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATN---FPWDIDEALRRR-LE-KRIYIPLPDAEARSAL 390 (491)
T ss_pred HHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccC---CCcchHHHHHHH-Hh-hheeeeCCCHHHHHHH
Confidence 997632 1233333432 222333 55666666 999999999999 64 5899999999999999
Q ss_pred HHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCc
Q 010136 316 LQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNS 395 (517)
Q Consensus 316 L~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (517)
|...+... ...++-.++.++++..+++|+ ..-++|+.|...+++.... .....++.+++.++.. .
T Consensus 391 i~~~l~~~--~~~~~~~~~~lae~~eGySGa--DI~nvCreAsm~~mRR~i~----------g~~~~ei~~lakE~~~-~ 455 (491)
T KOG0738|consen 391 IKILLRSV--ELDDPVNLEDLAERSEGYSGA--DITNVCREASMMAMRRKIA----------GLTPREIRQLAKEEPK-M 455 (491)
T ss_pred HHHhhccc--cCCCCccHHHHHHHhcCCChH--HHHHHHHHHHHHHHHHHHh----------cCCcHHhhhhhhhccc-c
Confidence 99887754 234455588899999999995 3337999999999987665 2222333444444444 3
Q ss_pred cccHHHHHHHHHHhccChh
Q 010136 396 QVRVDHMAVALSNTFKSPV 414 (517)
Q Consensus 396 ~Vt~~~v~~a~~~~~~~~~ 414 (517)
.|++.||+.|+.++..+..
T Consensus 456 pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 456 PVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred ccchhhHHHHHHHcCcCCC
Confidence 5999999999999887753
No 8
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=6.2e-26 Score=217.00 Aligned_cols=225 Identities=19% Similarity=0.236 Sum_probs=176.5
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHhhcc---------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEe
Q 010136 121 TAPSTIVCREDEQKKVLEFCKKNLEE---------EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSIN 191 (517)
Q Consensus 121 ~~p~~l~gRe~e~~~l~~~L~~~l~~---------~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn 191 (517)
...+.+-|.++|+++|.+.+.--+.. .++.++++|||||||||.+|++|+++-. ..|+.|.
T Consensus 148 vtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~----------AtFIrvv 217 (406)
T COG1222 148 VTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD----------ATFIRVV 217 (406)
T ss_pred CChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC----------ceEEEec
Confidence 34457899999999999997654432 3478999999999999999999998754 4799999
Q ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC-----------chHHH
Q 010136 192 CTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD-----------RAVLH 260 (517)
Q Consensus 192 ~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~-----------~~~L~ 260 (517)
++.+..+|- |.. ...++++|. +++.+.|+||||||||.+..++ |..|.
T Consensus 218 gSElVqKYi-----------------GEG-aRlVRelF~---lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTml 276 (406)
T COG1222 218 GSELVQKYI-----------------GEG-ARLVRELFE---LAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTML 276 (406)
T ss_pred cHHHHHHHh-----------------ccc-hHHHHHHHH---HHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHH
Confidence 977643333 333 677899997 6678999999999999998653 34455
Q ss_pred HHhccC--CCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHH
Q 010136 261 DLFMLT--TFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCAR 338 (517)
Q Consensus 261 ~l~~~~--~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~ 338 (517)
+|+... -.+..+|-||++||. ++-|+|++.+.+...+.|.|+.++.+...+||+-...+. ..-++-.++.+|+
T Consensus 277 eLL~qlDGFD~~~nvKVI~ATNR---~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM--~l~~dvd~e~la~ 351 (406)
T COG1222 277 ELLNQLDGFDPRGNVKVIMATNR---PDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM--NLADDVDLELLAR 351 (406)
T ss_pred HHHHhccCCCCCCCeEEEEecCC---ccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhc--cCccCcCHHHHHH
Confidence 555431 235678999999996 556789998875557899999999999999999887754 2223334888998
Q ss_pred HHHHHhC-CHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccC
Q 010136 339 KVAAASG-DMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKS 412 (517)
Q Consensus 339 ~~~~~~G-d~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~ 412 (517)
.....+| |++ .+|.+|+.+|.++.+. .||++||.+|+.++...
T Consensus 352 ~~~g~sGAdlk---aictEAGm~AiR~~R~----------------------------~Vt~~DF~~Av~KV~~~ 395 (406)
T COG1222 352 LTEGFSGADLK---AICTEAGMFAIRERRD----------------------------EVTMEDFLKAVEKVVKK 395 (406)
T ss_pred hcCCCchHHHH---HHHHHHhHHHHHhccC----------------------------eecHHHHHHHHHHHHhc
Confidence 8777777 555 6899999999999988 89999999999988653
No 9
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.4e-24 Score=219.47 Aligned_cols=259 Identities=18% Similarity=0.210 Sum_probs=193.1
Q ss_pred HhhhhcCCCchhhhhhhhccCCCCCCCChhHHHHHHhhcCcCCCCCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCC
Q 010136 79 KLMSARKSPVKKKLCDSFKSKPNWNPQDVEQMSAVREALHVSTAPSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCP 158 (517)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~p 158 (517)
++...........+++.+.+.|+++|.|++.+...+..|+..... +.+. -..|..-. -..+.++++||||
T Consensus 408 ~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~---p~~~-----pe~F~r~G--i~ppkGVLlyGPP 477 (693)
T KOG0730|consen 408 IFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRELQQAVEW---PLKH-----PEKFARFG--ISPPKGVLLYGPP 477 (693)
T ss_pred HHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHHHHHHhh---hhhc-----hHHHHHhc--CCCCceEEEECCC
Confidence 344444444455567777788888888887777777766654321 1111 11111111 1368899999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCC
Q 010136 159 GTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVM 238 (517)
Q Consensus 159 GtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 238 (517)
|||||+++++++++.. ..|++|.+..+-++|. |.+ ++.+++.|.+ ++..
T Consensus 478 GC~KT~lAkalAne~~----------~nFlsvkgpEL~sk~v-----------------GeS-Er~ir~iF~k---AR~~ 526 (693)
T KOG0730|consen 478 GCGKTLLAKALANEAG----------MNFLSVKGPELFSKYV-----------------GES-ERAIREVFRK---ARQV 526 (693)
T ss_pred CcchHHHHHHHhhhhc----------CCeeeccCHHHHHHhc-----------------Cch-HHHHHHHHHH---Hhhc
Confidence 9999999999999875 4799999988766665 555 8899999984 4567
Q ss_pred ceEEEEEeCcchhcccC--------chHHHHHhccCC--CCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCC
Q 010136 239 KMMLIIADELDYLITRD--------RAVLHDLFMLTT--FPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYS 308 (517)
Q Consensus 239 ~~~vI~iDEiD~L~~~~--------~~~L~~l~~~~~--~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~ 308 (517)
.|+|||+||||.+...+ ..+|.+|+.... ....+|.||++|| .++.+++++.+.+...+.|++++++
T Consensus 527 aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATN---Rpd~ID~ALlRPGRlD~iiyVplPD 603 (693)
T KOG0730|consen 527 APCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATN---RPDMIDPALLRPGRLDRIIYVPLPD 603 (693)
T ss_pred CCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccC---ChhhcCHHHcCCcccceeEeecCcc
Confidence 78999999999998754 246666665521 2346899999999 5888999999943345799999999
Q ss_pred HHHHHHHHHHHHhhhccCCCChh-HHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhh
Q 010136 309 KDQIIRILQERLMELSYIVFQPQ-ALELCARKVAAASG-DMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQA 386 (517)
Q Consensus 309 ~~e~~~IL~~rl~~~~~~~~~~~-ai~~ia~~~~~~~G-d~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (517)
.+...+||+.+++++ .++++ .++.+|+.+..++| |++ .+|++|+.+|.++..+.
T Consensus 604 ~~aR~~Ilk~~~kkm---p~~~~vdl~~La~~T~g~SGAel~---~lCq~A~~~a~~e~i~a------------------ 659 (693)
T KOG0730|consen 604 LEARLEILKQCAKKM---PFSEDVDLEELAQATEGYSGAEIV---AVCQEAALLALRESIEA------------------ 659 (693)
T ss_pred HHHHHHHHHHHHhcC---CCCccccHHHHHHHhccCChHHHH---HHHHHHHHHHHHHhccc------------------
Confidence 999999999999876 45555 58899998888888 454 79999999999887651
Q ss_pred hhhhhccCccccHHHHHHHHHHhccCh
Q 010136 387 ASAFEFFNSQVRVDHMAVALSNTFKSP 413 (517)
Q Consensus 387 ~~~~~~~~~~Vt~~~v~~a~~~~~~~~ 413 (517)
..|+.+||.+|+..+..+.
T Consensus 660 --------~~i~~~hf~~al~~~r~s~ 678 (693)
T KOG0730|consen 660 --------TEITWQHFEEALKAVRPSL 678 (693)
T ss_pred --------ccccHHHHHHHHHhhcccC
Confidence 1799999999998887764
No 10
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.92 E-value=3.3e-23 Score=206.76 Aligned_cols=273 Identities=16% Similarity=0.198 Sum_probs=199.3
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcc-CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEE-EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIF 202 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~-~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~ 202 (517)
++++|++++++.|..++...... ..+++++|+||||||||++++.+++++.. .+..+++........
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~----------~~~~~~~~~~~~~~~-- 71 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGV----------NLKITSGPALEKPGD-- 71 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC----------CEEEeccchhcCchh--
Confidence 46899999999999998765543 34678999999999999999999988742 334444433222111
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCC---------------
Q 010136 203 SKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTT--------------- 267 (517)
Q Consensus 203 ~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~--------------- 267 (517)
+...+. ....+.+|||||+|.+....++.|+.+++-..
T Consensus 72 ----------------------l~~~l~-----~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~ 124 (305)
T TIGR00635 72 ----------------------LAAILT-----NLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVR 124 (305)
T ss_pred ----------------------HHHHHH-----hcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCcccccee
Confidence 222222 12234699999999998776677776654211
Q ss_pred CCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCH
Q 010136 268 FPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDM 347 (517)
Q Consensus 268 ~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~ 347 (517)
....++++|+++|. ...+.+.+.+| |. ..+.|.+|+.+++.+|+...+... ...+++++++.+++ .+.|++
T Consensus 125 ~~~~~~~li~~t~~---~~~l~~~l~sR-~~-~~~~l~~l~~~e~~~il~~~~~~~-~~~~~~~al~~ia~---~~~G~p 195 (305)
T TIGR00635 125 LDLPPFTLVGATTR---AGMLTSPLRDR-FG-IILRLEFYTVEELAEIVSRSAGLL-NVEIEPEAALEIAR---RSRGTP 195 (305)
T ss_pred ecCCCeEEEEecCC---ccccCHHHHhh-cc-eEEEeCCCCHHHHHHHHHHHHHHh-CCCcCHHHHHHHHH---HhCCCc
Confidence 11234788888884 45677889998 63 478999999999999999887643 34789999999887 588999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccChhHHHhccCCHHHHH
Q 010136 348 RKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSPVVDTIKSLPQHQQI 427 (517)
Q Consensus 348 R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~~~~~i~~L~~~~k~ 427 (517)
|.++.+|+.++..|...... .|+.+++..++..+... ..+++.+++.
T Consensus 196 R~~~~ll~~~~~~a~~~~~~----------------------------~it~~~v~~~l~~l~~~-----~~~l~~~~~~ 242 (305)
T TIGR00635 196 RIANRLLRRVRDFAQVRGQK----------------------------IINRDIALKALEMLMID-----ELGLDEIDRK 242 (305)
T ss_pred chHHHHHHHHHHHHHHcCCC----------------------------CcCHHHHHHHHHHhCCC-----CCCCCHHHHH
Confidence 99999999988877654433 69999999999884222 4689999999
Q ss_pred HHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCChHHHHHHHH-HHhhcCceeeccCCc
Q 010136 428 LLCSAVKFFRGGKKDMTVGELNKSYMNICKTSLIPPVGTLEFFSMCR-VLHDQGVLKVGRDDK 489 (517)
Q Consensus 428 iL~al~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~-~L~~~glI~~~~~~~ 489 (517)
+|.|++....++ ++++. ++|..++.++.+. ..+++ .|.+.|+|....+|+
T Consensus 243 ~L~al~~~~~~~--~~~~~-------~ia~~lg~~~~~~---~~~~e~~Li~~~li~~~~~g~ 293 (305)
T TIGR00635 243 LLSVLIEQFQGG--PVGLK-------TLAAALGEDADTI---EDVYEPYLLQIGFLQRTPRGR 293 (305)
T ss_pred HHHHHHHHhCCC--cccHH-------HHHHHhCCCcchH---HHhhhHHHHHcCCcccCCchh
Confidence 999998776432 45664 5588888766654 47778 699999997444554
No 11
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=99.91 E-value=5.8e-22 Score=188.04 Aligned_cols=363 Identities=15% Similarity=0.165 Sum_probs=255.7
Q ss_pred hhcCcCCCCCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCC
Q 010136 115 EALHVSTAPSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTS 194 (517)
Q Consensus 115 ~~l~~~~~p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~ 194 (517)
+.|--+++ .+.|..++++.+..+++..+..+.++++++.||.|+|||.++...+.. .+.. | .++-.+.+|+.-
T Consensus 17 ~rl~~~~~--~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~---~-E~~l~v~Lng~~ 89 (408)
T KOG2228|consen 17 ERLCGPHI--NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQEN---G-ENFLLVRLNGEL 89 (408)
T ss_pred HHhcCCCc--ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhc---C-CeEEEEEECccc
Confidence 34444444 489999999999999999999999999999999999999999988776 2222 2 236788999988
Q ss_pred CCCHHHHHHHHHHHhCCCCCC--CCCCCHHHHHHHHHHh--hhccCCCceEEEEEeCcchhccc-CchHHHHHhccCCCC
Q 010136 195 LTNTSEIFSKILLKLQPRKKL--NGSTSPLQYLQNLYSQ--KLHSSVMKMMLIIADELDYLITR-DRAVLHDLFMLTTFP 269 (517)
Q Consensus 195 ~~s~~~i~~~i~~~l~~~~~~--~~~~~~~~~l~~~~~~--~~~~~~~~~~vI~iDEiD~L~~~-~~~~L~~l~~~~~~~ 269 (517)
.. ...++..|..++...... ....+..+.+..++.- +.....+.++|.|+||||.++.. +|..||++|+..+..
T Consensus 90 ~~-dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~ 168 (408)
T KOG2228|consen 90 QT-DKIALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSA 168 (408)
T ss_pred hh-hHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhc
Confidence 76 555666666665322111 1112224445544432 11223455688889999999765 789999999999888
Q ss_pred CCcEEEEEEECCCCcchhhcccccccCCCceEEEeC-CCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHH
Q 010136 270 FSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFR-AYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMR 348 (517)
Q Consensus 270 ~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~-p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R 348 (517)
..++++||.|...|..+.+..|++|| |..++|.+. +....+..++++..+. ++ ..+.+ .++.+-+.+...=.|.|
T Consensus 169 r~Piciig~Ttrld~lE~LEKRVKSR-Fshr~I~m~~~~~l~~yv~l~r~ll~-v~-~e~~~-~~~~wn~~~~~~L~d~~ 244 (408)
T KOG2228|consen 169 RAPICIIGVTTRLDILELLEKRVKSR-FSHRVIFMLPSLPLGDYVDLYRKLLS-VP-AEFSD-FAEKWNRSVQEVLSDHR 244 (408)
T ss_pred CCCeEEEEeeccccHHHHHHHHHHhh-cccceeeccCCCChHHHHHHHHHHhc-CC-ccCcc-HHHHHHhhhhHhhcchh
Confidence 89999999999999999999999999 777656654 4577888888887663 11 12233 44444444433334555
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccChhHHHhccCCHHHHHH
Q 010136 349 KALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSPVVDTIKSLPQHQQIL 428 (517)
Q Consensus 349 ~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~~~~~i~~L~~~~k~i 428 (517)
.+-..++.-.......-.. .-...|.+|.+++..+...+..++..+.+.+|+..++.+
T Consensus 245 sl~k~l~~~~~~l~~~l~~----------------------~vas~p~~ta~~~~~v~~~ys~d~Kie~l~gLSvLEL~L 302 (408)
T KOG2228|consen 245 SLSKNLRSLHDLLKNALNR----------------------LVASHPLMTAEDLAEVSRQYSVDPKIELLSGLSVLELYL 302 (408)
T ss_pred hHHHHHHHhhHHHHhhhhh----------------------hhccCcchhHHHHHHHHHHhccChHHHHhcCchHHHHHH
Confidence 4333333333221111110 000113799999999999999999999999999999999
Q ss_pred HHHHHHHH-hcCCCCccHHHHHHHHHHHHHhcC--CCCCChHHHHHHHHHHhhcCceeec----cCC---ceeEEEeecC
Q 010136 429 LCSAVKFF-RGGKKDMTVGELNKSYMNICKTSL--IPPVGTLEFFSMCRVLHDQGVLKVG----RDD---KLKRVTLKAD 498 (517)
Q Consensus 429 L~al~~l~-~~~~~~~~~~~l~~~y~~~~~~~~--~~~~~~~~~~~~~~~L~~~glI~~~----~~~---~~~~~~l~~~ 498 (517)
|.++.+.. ......+++..+|..|+++.++.. ..-..++.+.+.++.|..+++|.-- ..| .++.-+|.+|
T Consensus 303 II~~~r~~~~ae~~sfNF~lvY~EfrK~iksi~hTs~~~~k~vvlnAfEhL~slelI~p~~~~~~~~lt~e~ql~kLlvd 382 (408)
T KOG2228|consen 303 IICMKRETLIAELNSFNFNLVYAEFRKFIKSIAHTSELWAKTVVLNAFEHLRSLELILPFEDIGGFGLTREYQLGKLLVD 382 (408)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHHhhhhheeeEEeecccCCcchhHHHHHhhhhhh
Confidence 99999844 336678999999999999998631 2333556677888999999998633 122 3345688899
Q ss_pred HHHHHHHHhCChh
Q 010136 499 ESDITFALQGVRF 511 (517)
Q Consensus 499 ~~~i~~~l~~~~~ 511 (517)
...|..+++..+-
T Consensus 383 ~t~i~~~lrsyr~ 395 (408)
T KOG2228|consen 383 ATQIHRGLRSYRP 395 (408)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999987653
No 12
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.90 E-value=8.8e-22 Score=197.96 Aligned_cols=272 Identities=15% Similarity=0.162 Sum_probs=199.7
Q ss_pred CCCCCcHHHHHHHHHHHHHhhc-cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLE-EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIF 202 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~-~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~ 202 (517)
++++|++++.+.+..++..... +...++++|+||||||||++++.+++++.. .+.++++.......
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~----------~~~~~~~~~~~~~~--- 91 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGV----------NIRITSGPALEKPG--- 91 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCC----------CeEEEecccccChH---
Confidence 4799999999999988877554 344678999999999999999999998752 35555554432211
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCC--------------
Q 010136 203 SKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF-------------- 268 (517)
Q Consensus 203 ~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~-------------- 268 (517)
.+..++. ......||||||||.+....++.|+.+++....
T Consensus 92 ---------------------~l~~~l~-----~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~ 145 (328)
T PRK00080 92 ---------------------DLAAILT-----NLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIR 145 (328)
T ss_pred ---------------------HHHHHHH-----hcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccccee
Confidence 1223332 122456999999999977666777776653210
Q ss_pred -CCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCH
Q 010136 269 -PFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDM 347 (517)
Q Consensus 269 -~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~ 347 (517)
.-.++++|+++|. ...+.+.+++| |+ ..+.|.+|+.+++.+||...+... ...+++++++++++ .+.|++
T Consensus 146 ~~l~~~~li~at~~---~~~l~~~L~sR-f~-~~~~l~~~~~~e~~~il~~~~~~~-~~~~~~~~~~~ia~---~~~G~p 216 (328)
T PRK00080 146 LDLPPFTLIGATTR---AGLLTSPLRDR-FG-IVQRLEFYTVEELEKIVKRSARIL-GVEIDEEGALEIAR---RSRGTP 216 (328)
T ss_pred ecCCCceEEeecCC---cccCCHHHHHh-cC-eeeecCCCCHHHHHHHHHHHHHHc-CCCcCHHHHHHHHH---HcCCCc
Confidence 1134788998885 34567788888 64 489999999999999999877643 34789999999987 578999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccChhHHHhccCCHHHHH
Q 010136 348 RKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSPVVDTIKSLPQHQQI 427 (517)
Q Consensus 348 R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~~~~~i~~L~~~~k~ 427 (517)
|.|..+|+.+..++...+.. .|+.+++..++...... ...|+..++.
T Consensus 217 R~a~~~l~~~~~~a~~~~~~----------------------------~I~~~~v~~~l~~~~~~-----~~~l~~~~~~ 263 (328)
T PRK00080 217 RIANRLLRRVRDFAQVKGDG----------------------------VITKEIADKALDMLGVD-----ELGLDEMDRK 263 (328)
T ss_pred hHHHHHHHHHHHHHHHcCCC----------------------------CCCHHHHHHHHHHhCCC-----cCCCCHHHHH
Confidence 99999999998877654333 79999999999775333 3589999999
Q ss_pred HHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCChHHHHHHHH-HHhhcCceeeccCC
Q 010136 428 LLCSAVKFFRGGKKDMTVGELNKSYMNICKTSLIPPVGTLEFFSMCR-VLHDQGVLKVGRDD 488 (517)
Q Consensus 428 iL~al~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~-~L~~~glI~~~~~~ 488 (517)
+|.+++..+.++ ++++..+ +..++.++- ...+.++ .|.+.|||....+|
T Consensus 264 ~l~~~~~~~~~~--~~~~~~~-------a~~lg~~~~---~~~~~~e~~Li~~~li~~~~~g 313 (328)
T PRK00080 264 YLRTIIEKFGGG--PVGLDTL-------AAALGEERD---TIEDVYEPYLIQQGFIQRTPRG 313 (328)
T ss_pred HHHHHHHHcCCC--ceeHHHH-------HHHHCCCcc---hHHHHhhHHHHHcCCcccCCch
Confidence 999888775433 5777766 666655444 4456777 99999999743333
No 13
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.89 E-value=4.5e-21 Score=178.37 Aligned_cols=269 Identities=16% Similarity=0.164 Sum_probs=201.9
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcc-CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEE-EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIF 202 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~-~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~ 202 (517)
++++|+++..+++.-++..+... ....+++++||||.||||+|..++++++. .+-..++..+..+.++
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgv----------n~k~tsGp~leK~gDl- 94 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGV----------NLKITSGPALEKPGDL- 94 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcC----------CeEecccccccChhhH-
Confidence 47899999999999998886654 44779999999999999999999999873 4555666666555542
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCC---------------
Q 010136 203 SKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTT--------------- 267 (517)
Q Consensus 203 ~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~--------------- 267 (517)
..++. .-...-|+||||||.|.....++||..++-..
T Consensus 95 -----------------------aaiLt-----~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ 146 (332)
T COG2255 95 -----------------------AAILT-----NLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIR 146 (332)
T ss_pred -----------------------HHHHh-----cCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEe
Confidence 33333 22345699999999999888899998876421
Q ss_pred CCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCH
Q 010136 268 FPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDM 347 (517)
Q Consensus 268 ~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~ 347 (517)
..-.++.+||+|+. ...+...|++| |+. ..++.-|+.+|+.+|+......+ ...+++++...||+ ++.|.+
T Consensus 147 ldLppFTLIGATTr---~G~lt~PLrdR-FGi-~~rlefY~~~eL~~Iv~r~a~~l-~i~i~~~~a~eIA~---rSRGTP 217 (332)
T COG2255 147 LDLPPFTLIGATTR---AGMLTNPLRDR-FGI-IQRLEFYTVEELEEIVKRSAKIL-GIEIDEEAALEIAR---RSRGTP 217 (332)
T ss_pred ccCCCeeEeeeccc---cccccchhHHh-cCC-eeeeecCCHHHHHHHHHHHHHHh-CCCCChHHHHHHHH---hccCCc
Confidence 12257999998885 44567788898 776 88999999999999999666543 34778888888888 589999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccChhHHHhccCCHHHHH
Q 010136 348 RKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSPVVDTIKSLPQHQQI 427 (517)
Q Consensus 348 R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~~~~~i~~L~~~~k~ 427 (517)
|-|..++++..+.|...+.. .|+.+-..+|++...... .+|...++-
T Consensus 218 RIAnRLLrRVRDfa~V~~~~----------------------------~I~~~ia~~aL~~L~Vd~-----~GLd~~D~k 264 (332)
T COG2255 218 RIANRLLRRVRDFAQVKGDG----------------------------DIDRDIADKALKMLDVDE-----LGLDEIDRK 264 (332)
T ss_pred HHHHHHHHHHHHHHHHhcCC----------------------------cccHHHHHHHHHHhCccc-----ccccHHHHH
Confidence 99999999999999987665 799999999999887654 389999999
Q ss_pred HHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCChHHHHHHHH-HHhhcCceeec
Q 010136 428 LLCSAVKFFRGGKKDMTVGELNKSYMNICKTSLIPPVGTLEFFSMCR-VLHDQGVLKVG 485 (517)
Q Consensus 428 iL~al~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~-~L~~~glI~~~ 485 (517)
+|.+++.-..+ .++.+..+ |...+.+.- ++.++++ .|...|+|..-
T Consensus 265 ~L~~li~~f~G--gPVGl~ti-------a~~lge~~~---TiEdv~EPyLiq~gfi~RT 311 (332)
T COG2255 265 YLRALIEQFGG--GPVGLDTI-------AAALGEDRD---TIEDVIEPYLIQQGFIQRT 311 (332)
T ss_pred HHHHHHHHhCC--CCccHHHH-------HHHhcCchh---HHHHHHhHHHHHhchhhhC
Confidence 99999987644 34455444 333333222 2333333 56677777543
No 14
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2e-22 Score=203.77 Aligned_cols=276 Identities=18% Similarity=0.200 Sum_probs=193.0
Q ss_pred HHhhhhcCCCchhhhhhhhccCCCCCCCChhHHHHHHhhcCcCCCCCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcC
Q 010136 78 EKLMSARKSPVKKKLCDSFKSKPNWNPQDVEQMSAVREALHVSTAPSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGC 157 (517)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~ 157 (517)
++|++...+-.....++.+...|+++|+|++.+...+.-|....+. .+-|-+.++. +.-..+.++|+|||
T Consensus 484 eDF~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~--PiK~pd~~k~--------lGi~~PsGvLL~GP 553 (802)
T KOG0733|consen 484 EDFEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILA--PIKRPDLFKA--------LGIDAPSGVLLCGP 553 (802)
T ss_pred HHHHHHHHhcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhh--hccCHHHHHH--------hCCCCCCceEEeCC
Confidence 4666666666666678999999999999999888888766665431 2333333222 22235789999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCC
Q 010136 158 PGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSV 237 (517)
Q Consensus 158 pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 237 (517)
||||||.+|++++++-+ ..|+.|-+..+.+.|. |.+ +..++.+|. .++.
T Consensus 554 PGCGKTLlAKAVANEag----------~NFisVKGPELlNkYV-----------------GES-ErAVR~vFq---RAR~ 602 (802)
T KOG0733|consen 554 PGCGKTLLAKAVANEAG----------ANFISVKGPELLNKYV-----------------GES-ERAVRQVFQ---RARA 602 (802)
T ss_pred CCccHHHHHHHHhhhcc----------CceEeecCHHHHHHHh-----------------hhH-HHHHHHHHH---Hhhc
Confidence 99999999999998854 4699999988766665 555 788999997 4467
Q ss_pred CceEEEEEeCcchhcccCc--------hHHHHHhcc-CC-CCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCC
Q 010136 238 MKMMLIIADELDYLITRDR--------AVLHDLFML-TT-FPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAY 307 (517)
Q Consensus 238 ~~~~vI~iDEiD~L~~~~~--------~~L~~l~~~-~~-~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~ 307 (517)
..|+|||+||+|.|+.++. .++.+|+-. .. .....|.|||+||. ++-++|++.+.+.....+++..+
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNR---PDiIDpAiLRPGRlDk~LyV~lP 679 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNR---PDIIDPAILRPGRLDKLLYVGLP 679 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCC---CcccchhhcCCCccCceeeecCC
Confidence 8899999999999998642 345555533 22 24568999999995 66678888886444568888999
Q ss_pred CHHHHHHHHHHHHhhhccCCCChhH-HHHHHHHHH--HHhC-CHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchh
Q 010136 308 SKDQIIRILQERLMELSYIVFQPQA-LELCARKVA--AASG-DMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFD 383 (517)
Q Consensus 308 ~~~e~~~IL~~rl~~~~~~~~~~~a-i~~ia~~~~--~~~G-d~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~ 383 (517)
+.++..+||+....+. ...+++++ ++.||+... .++| |+- .++++|...|.++.....+.. ..+..+..
T Consensus 680 n~~eR~~ILK~~tkn~-k~pl~~dVdl~eia~~~~c~gftGADLa---aLvreAsi~AL~~~~~~~~~~---~~~~~~~~ 752 (802)
T KOG0733|consen 680 NAEERVAILKTITKNT-KPPLSSDVDLDEIARNTKCEGFTGADLA---ALVREASILALRESLFEIDSS---EDDVTVRS 752 (802)
T ss_pred CHHHHHHHHHHHhccC-CCCCCcccCHHHHhhcccccCCchhhHH---HHHHHHHHHHHHHHHhhcccc---Ccccceee
Confidence 9999999999888752 23444444 778887543 4555 433 477888877766554421111 00111100
Q ss_pred hhhhhhhhccCccccHHHHHHHHHHhccCh
Q 010136 384 QQAASAFEFFNSQVRVDHMAVALSNTFKSP 413 (517)
Q Consensus 384 ~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~ 413 (517)
.+-.++..||.+|++++..+.
T Consensus 753 ---------~~~~~t~~hF~eA~~~i~pSv 773 (802)
T KOG0733|consen 753 ---------STIIVTYKHFEEAFQRIRPSV 773 (802)
T ss_pred ---------eeeeecHHHHHHHHHhcCCCc
Confidence 011588999999999988764
No 15
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.87 E-value=1.5e-21 Score=178.73 Aligned_cols=192 Identities=17% Similarity=0.220 Sum_probs=132.2
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhc-cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHH
Q 010136 122 APSTIVCREDEQKKVLEFCKKNLE-EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSE 200 (517)
Q Consensus 122 ~p~~l~gRe~e~~~l~~~L~~~l~-~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~ 200 (517)
..++++|+++....+.-++..... +....++++|||||+||||+|+.++++++. .+..+++..+....+
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~----------~~~~~sg~~i~k~~d 91 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGV----------NFKITSGPAIEKAGD 91 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT------------EEEEECCC--SCHH
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCC----------CeEeccchhhhhHHH
Confidence 346899999999998888877654 345779999999999999999999999863 577888866544333
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCC------------
Q 010136 201 IFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF------------ 268 (517)
Q Consensus 201 i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~------------ 268 (517)
+ ..++. .-....||||||||.|....|+.||..++-...
T Consensus 92 l------------------------~~il~-----~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~ 142 (233)
T PF05496_consen 92 L------------------------AAILT-----NLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARS 142 (233)
T ss_dssp H------------------------HHHHH-----T--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BE
T ss_pred H------------------------HHHHH-----hcCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccce
Confidence 2 22332 112346999999999998889999998875211
Q ss_pred ---CCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhC
Q 010136 269 ---PFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASG 345 (517)
Q Consensus 269 ---~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~G 345 (517)
.-.++.+||+|+. ...+.+.+++| |+. ...+..|+.+|+.+|+......+ ...+++++..+||+ .+.|
T Consensus 143 ~~~~l~~FTligATTr---~g~ls~pLrdR-Fgi-~~~l~~Y~~~el~~Iv~r~a~~l-~i~i~~~~~~~Ia~---rsrG 213 (233)
T PF05496_consen 143 IRINLPPFTLIGATTR---AGLLSSPLRDR-FGI-VLRLEFYSEEELAKIVKRSARIL-NIEIDEDAAEEIAR---RSRG 213 (233)
T ss_dssp EEEE----EEEEEESS---GCCTSHCCCTT-SSE-EEE----THHHHHHHHHHCCHCT-T-EE-HHHHHHHHH---CTTT
T ss_pred eeccCCCceEeeeecc---ccccchhHHhh-cce-ecchhcCCHHHHHHHHHHHHHHh-CCCcCHHHHHHHHH---hcCC
Confidence 1136999999995 45567899999 755 77899999999999999554432 34788999999988 6899
Q ss_pred CHHHHHHHHHHHHHHH
Q 010136 346 DMRKALSVCRSAIEIL 361 (517)
Q Consensus 346 d~R~al~ll~~A~~~a 361 (517)
++|-|.++++++.++|
T Consensus 214 tPRiAnrll~rvrD~a 229 (233)
T PF05496_consen 214 TPRIANRLLRRVRDFA 229 (233)
T ss_dssp SHHHHHHHHHHHCCCC
T ss_pred ChHHHHHHHHHHHHHH
Confidence 9999999999987654
No 16
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.86 E-value=3.9e-21 Score=176.04 Aligned_cols=224 Identities=18% Similarity=0.297 Sum_probs=162.5
Q ss_pred CCCCCCCCCcHHHHHH---HHHHHHHh--hccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCC
Q 010136 120 STAPSTIVCREDEQKK---VLEFCKKN--LEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTS 194 (517)
Q Consensus 120 ~~~p~~l~gRe~e~~~---l~~~L~~~--l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~ 194 (517)
+...++++|+|+.... |.++|.+- +....+.++|+|||||||||++|++++++.. +.++.+++..
T Consensus 117 ~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k----------vp~l~vkat~ 186 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK----------VPLLLVKATE 186 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC----------CceEEechHH
Confidence 4456789999876543 33444331 2234588999999999999999999988754 5788898877
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC--c-------hHHHHHhcc
Q 010136 195 LTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD--R-------AVLHDLFML 265 (517)
Q Consensus 195 ~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~--~-------~~L~~l~~~ 265 (517)
+...+. | ...+.+.+++. .+++..|||+||||+|.+.-.+ | +.+..|+..
T Consensus 187 liGehV-----------------G-dgar~Ihely~---rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTe 245 (368)
T COG1223 187 LIGEHV-----------------G-DGARRIHELYE---RARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTE 245 (368)
T ss_pred HHHHHh-----------------h-hHHHHHHHHHH---HHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHh
Confidence 633322 2 22667888887 3457789999999999987542 1 233333322
Q ss_pred C--CCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHH
Q 010136 266 T--TFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAA 343 (517)
Q Consensus 266 ~--~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~ 343 (517)
. ...+-.|+.|++||. ++-|++.++|| |. ..|.|.-++.+|+.+||+..++.++. .++-. +++++++....
T Consensus 246 lDgi~eneGVvtIaaTN~---p~~LD~aiRsR-FE-eEIEF~LP~~eEr~~ile~y~k~~Pl-pv~~~-~~~~~~~t~g~ 318 (368)
T COG1223 246 LDGIKENEGVVTIAATNR---PELLDPAIRSR-FE-EEIEFKLPNDEERLEILEYYAKKFPL-PVDAD-LRYLAAKTKGM 318 (368)
T ss_pred ccCcccCCceEEEeecCC---hhhcCHHHHhh-hh-heeeeeCCChHHHHHHHHHHHHhCCC-ccccC-HHHHHHHhCCC
Confidence 1 124567999999995 66789999999 64 59999999999999999999987743 22222 77787766555
Q ss_pred hC-CHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhcc
Q 010136 344 SG-DMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFK 411 (517)
Q Consensus 344 ~G-d~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~ 411 (517)
+| |+-. .+++.|...|..++++ .|+-+|+..|+++-..
T Consensus 319 SgRdike--kvlK~aLh~Ai~ed~e----------------------------~v~~edie~al~k~r~ 357 (368)
T COG1223 319 SGRDIKE--KVLKTALHRAIAEDRE----------------------------KVEREDIEKALKKERK 357 (368)
T ss_pred CchhHHH--HHHHHHHHHHHHhchh----------------------------hhhHHHHHHHHHhhcc
Confidence 55 4332 5889999999999888 8999999999987443
No 17
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.86 E-value=1.6e-20 Score=182.89 Aligned_cols=191 Identities=20% Similarity=0.274 Sum_probs=142.7
Q ss_pred CCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHH
Q 010136 125 TIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSK 204 (517)
Q Consensus 125 ~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~ 204 (517)
+++|++.-+.. ...|.+.+..+...+++|||||||||||+++.++.... ..|..+|+....
T Consensus 25 e~vGQ~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~----------~~f~~~sAv~~g-------- 85 (436)
T COG2256 25 EVVGQEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTN----------AAFEALSAVTSG-------- 85 (436)
T ss_pred HhcChHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhC----------CceEEecccccc--------
Confidence 45666654432 23466667778899999999999999999999988764 468889986642
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCCC
Q 010136 205 ILLKLQPRKKLNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAID 283 (517)
Q Consensus 205 i~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~ 283 (517)
.+.++..+++. .....++..|||||||++|....|+.|...+ .+..+++||+|+ .+
T Consensus 86 -----------------vkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v-----E~G~iilIGATT-EN 142 (436)
T COG2256 86 -----------------VKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHV-----ENGTIILIGATT-EN 142 (436)
T ss_pred -----------------HHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhh-----cCCeEEEEeccC-CC
Confidence 23334444331 1112356799999999999888888886655 457899999554 44
Q ss_pred cchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHh----hhc--cCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 010136 284 LADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLM----ELS--YIVFQPQALELCARKVAAASGDMRKALSVCRSA 357 (517)
Q Consensus 284 ~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~----~~~--~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A 357 (517)
-.-.+.+.+.|| + +++.|.|++.+++..+|...+. ++. ...+++++++++++ .+.||+|.+++.+..+
T Consensus 143 PsF~ln~ALlSR-~--~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~---~s~GD~R~aLN~LE~~ 216 (436)
T COG2256 143 PSFELNPALLSR-A--RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVR---LSNGDARRALNLLELA 216 (436)
T ss_pred CCeeecHHHhhh-h--heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHH---hcCchHHHHHHHHHHH
Confidence 344578999999 6 7999999999999999997443 222 13468999999987 5899999999999999
Q ss_pred HHHHHH
Q 010136 358 IEILEA 363 (517)
Q Consensus 358 ~~~a~~ 363 (517)
+..++.
T Consensus 217 ~~~~~~ 222 (436)
T COG2256 217 ALSAEP 222 (436)
T ss_pred HHhcCC
Confidence 887654
No 18
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=6e-21 Score=177.88 Aligned_cols=200 Identities=20% Similarity=0.219 Sum_probs=153.0
Q ss_pred hccCCCCCCCChhHHHHHHhhcCcCCCCCCCCCcHHHHHHHHHHHHHhhccCC--CCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 96 FKSKPNWNPQDVEQMSAVREALHVSTAPSTIVCREDEQKKVLEFCKKNLEEEK--AGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~l~gRe~e~~~l~~~L~~~l~~~~--~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
+.++|++.|.|++.+..+++.|.+..+ |.--+-..+.+.+ -..+||||||||||+.|+++|+.+.
T Consensus 124 v~EKPNVkWsDVAGLE~AKeALKEAVI-------------LPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA 190 (439)
T KOG0739|consen 124 VREKPNVKWSDVAGLEGAKEALKEAVI-------------LPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA 190 (439)
T ss_pred hccCCCCchhhhccchhHHHHHHhhee-------------ecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc
Confidence 367899999999999999999998865 1112223344443 4589999999999999999999876
Q ss_pred HHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcc
Q 010136 174 VDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLIT 253 (517)
Q Consensus 174 ~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~ 253 (517)
. -.|+.|+.+.+.+.+- |.+ .+.+.++|. +++..+|.||||||||.|+.
T Consensus 191 n----------STFFSvSSSDLvSKWm-----------------GES-EkLVknLFe---mARe~kPSIIFiDEiDslcg 239 (439)
T KOG0739|consen 191 N----------STFFSVSSSDLVSKWM-----------------GES-EKLVKNLFE---MARENKPSIIFIDEIDSLCG 239 (439)
T ss_pred C----------CceEEeehHHHHHHHh-----------------ccH-HHHHHHHHH---HHHhcCCcEEEeehhhhhcc
Confidence 5 2688998887755554 454 788899998 66789999999999999987
Q ss_pred cCc------------hHHHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHh
Q 010136 254 RDR------------AVLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLM 321 (517)
Q Consensus 254 ~~~------------~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~ 321 (517)
.+. +.|.++-- ....+..+.|+|++| .++.|+.++++| |. .+|+++-+.......+++-.+.
T Consensus 240 ~r~enEseasRRIKTEfLVQMqG-VG~d~~gvLVLgATN---iPw~LDsAIRRR-Fe-kRIYIPLPe~~AR~~MF~lhlG 313 (439)
T KOG0739|consen 240 SRSENESEASRRIKTEFLVQMQG-VGNDNDGVLVLGATN---IPWVLDSAIRRR-FE-KRIYIPLPEAHARARMFKLHLG 313 (439)
T ss_pred CCCCCchHHHHHHHHHHHHhhhc-cccCCCceEEEecCC---CchhHHHHHHHH-hh-cceeccCCcHHHhhhhheeccC
Confidence 632 22333222 233456899999999 799999999998 64 5888888888887777776665
Q ss_pred hhccCCCChhHHHHHHHHHHHHhCC
Q 010136 322 ELSYIVFQPQALELCARKVAAASGD 346 (517)
Q Consensus 322 ~~~~~~~~~~ai~~ia~~~~~~~Gd 346 (517)
.. +..+++..++.+++++.+++|.
T Consensus 314 ~t-p~~LT~~d~~eL~~kTeGySGs 337 (439)
T KOG0739|consen 314 DT-PHVLTEQDFKELARKTEGYSGS 337 (439)
T ss_pred CC-ccccchhhHHHHHhhcCCCCcC
Confidence 43 3577888899999999999984
No 19
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.85 E-value=1.2e-20 Score=193.00 Aligned_cols=228 Identities=18% Similarity=0.224 Sum_probs=160.4
Q ss_pred cCCCCCCCCCcHHHHHHHHHHHHHhhcc---------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEE
Q 010136 119 VSTAPSTIVCREDEQKKVLEFCKKNLEE---------EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFS 189 (517)
Q Consensus 119 ~~~~p~~l~gRe~e~~~l~~~L~~~l~~---------~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~ 189 (517)
+++.++++.|+++++++|.+.+...+.. ..+.+++|+||||||||++++++++++. ..++.
T Consensus 126 p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~----------~~~i~ 195 (389)
T PRK03992 126 PNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN----------ATFIR 195 (389)
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC----------CCEEE
Confidence 3456678999999999999987553332 3467899999999999999999998764 35888
Q ss_pred EeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC-----------chH
Q 010136 190 INCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD-----------RAV 258 (517)
Q Consensus 190 vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~-----------~~~ 258 (517)
++|..+...+. +. ....++.+|.. .....+.||||||+|.+.... +..
T Consensus 196 v~~~~l~~~~~-----------------g~-~~~~i~~~f~~---a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~ 254 (389)
T PRK03992 196 VVGSELVQKFI-----------------GE-GARLVRELFEL---AREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRT 254 (389)
T ss_pred eehHHHhHhhc-----------------cc-hHHHHHHHHHH---HHhcCCeEEEEechhhhhcccccCCCCccHHHHHH
Confidence 88765432211 22 24556666762 234567899999999996431 234
Q ss_pred HHHHhccCC--CCCCcEEEEEEECCCCcchhhccccccc-CCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHH
Q 010136 259 LHDLFMLTT--FPFSRFILIGIANAIDLADRFLPRLQSM-NCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALEL 335 (517)
Q Consensus 259 L~~l~~~~~--~~~~~v~lI~ian~~~~~~~l~~~l~sr-~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ 335 (517)
+..++.... ....++.||++||. ++.+++.+.+. +| ...|.|++|+.++..+||+..+...... .+..+..
T Consensus 255 l~~lL~~ld~~~~~~~v~VI~aTn~---~~~ld~allRpgRf-d~~I~v~~P~~~~R~~Il~~~~~~~~~~--~~~~~~~ 328 (389)
T PRK03992 255 LMQLLAEMDGFDPRGNVKIIAATNR---IDILDPAILRPGRF-DRIIEVPLPDEEGRLEILKIHTRKMNLA--DDVDLEE 328 (389)
T ss_pred HHHHHHhccccCCCCCEEEEEecCC---hhhCCHHHcCCccC-ceEEEECCCCHHHHHHHHHHHhccCCCC--CcCCHHH
Confidence 556654321 23457999999995 45677887752 15 4589999999999999999887754211 1233566
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccCh
Q 010136 336 CARKVAAASGDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSP 413 (517)
Q Consensus 336 ia~~~~~~~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~ 413 (517)
+|+.+...+| ...-.+|++|...|.+++.. .|+.+||.+|+..+....
T Consensus 329 la~~t~g~sg--adl~~l~~eA~~~a~~~~~~----------------------------~i~~~d~~~A~~~~~~~~ 376 (389)
T PRK03992 329 LAELTEGASG--ADLKAICTEAGMFAIRDDRT----------------------------EVTMEDFLKAIEKVMGKE 376 (389)
T ss_pred HHHHcCCCCH--HHHHHHHHHHHHHHHHcCCC----------------------------CcCHHHHHHHHHHHhccc
Confidence 7765544443 23336899999998877654 799999999999987654
No 20
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=4.4e-20 Score=191.32 Aligned_cols=212 Identities=19% Similarity=0.236 Sum_probs=148.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNL 228 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~ 228 (517)
..++++|||||||||.+||+|+.++. ..|+.|.++++.+.|. |.+ ++.+++.
T Consensus 705 RSGILLYGPPGTGKTLlAKAVATEcs----------L~FlSVKGPELLNMYV-----------------GqS-E~NVR~V 756 (953)
T KOG0736|consen 705 RSGILLYGPPGTGKTLLAKAVATECS----------LNFLSVKGPELLNMYV-----------------GQS-EENVREV 756 (953)
T ss_pred cceeEEECCCCCchHHHHHHHHhhce----------eeEEeecCHHHHHHHh-----------------cch-HHHHHHH
Confidence 56899999999999999999999975 5799999988766665 555 8999999
Q ss_pred HHhhhccCCCceEEEEEeCcchhcccCc----------hH----HHHHhccCCCCCCcEEEEEEECCCCcchhhcccccc
Q 010136 229 YSQKLHSSVMKMMLIIADELDYLITRDR----------AV----LHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQS 294 (517)
Q Consensus 229 ~~~~~~~~~~~~~vI~iDEiD~L~~~~~----------~~----L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~s 294 (517)
|+ .++...|||||+||+|.|...+. .+ |.+|-.+...+...|.|||+||. |+.+||.|.+
T Consensus 757 Fe---rAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNR---PDLLDpALLR 830 (953)
T KOG0736|consen 757 FE---RARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNR---PDLLDPALLR 830 (953)
T ss_pred HH---HhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCC---ccccChhhcC
Confidence 98 45678899999999999987531 22 22232233335678999999996 5557888888
Q ss_pred cCCCceEEEeCCC-CHHHHHHHHHHHHhhhccCCCChhH-HHHHHHHHHH-HhC-CHHHHHHHHHHHHHHHHHHHHhhhh
Q 010136 295 MNCKPLVVTFRAY-SKDQIIRILQERLMELSYIVFQPQA-LELCARKVAA-ASG-DMRKALSVCRSAIEILEAEMRESVS 370 (517)
Q Consensus 295 r~~~~~~i~f~p~-~~~e~~~IL~~rl~~~~~~~~~~~a-i~~ia~~~~~-~~G-d~R~al~ll~~A~~~a~~~~~~~~~ 370 (517)
.+.....+++.+- +.+.-..||+..-+++ .+++++ +..+|+++.. .+| |+ ..+|..|+..|..+.....+
T Consensus 831 PGRFDKLvyvG~~~d~esk~~vL~AlTrkF---kLdedVdL~eiAk~cp~~~TGADl---YsLCSdA~l~AikR~i~~ie 904 (953)
T KOG0736|consen 831 PGRFDKLVYVGPNEDAESKLRVLEALTRKF---KLDEDVDLVEIAKKCPPNMTGADL---YSLCSDAMLAAIKRTIHDIE 904 (953)
T ss_pred CCccceeEEecCCccHHHHHHHHHHHHHHc---cCCCCcCHHHHHhhCCcCCchhHH---HHHHHHHHHHHHHHHHHHhh
Confidence 6333445666555 4455566777666665 555554 6677776532 334 44 36899999888776654332
Q ss_pred cccc---ccccccchhhhhhhhhhccCccccHHHHHHHHHHhccChh
Q 010136 371 KMNS---ASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSPV 414 (517)
Q Consensus 371 ~~~~---~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~~ 414 (517)
.... +....++ .|+++|+.+++++...+..
T Consensus 905 ~g~~~~~e~~~~~v--------------~V~~eDflks~~~l~PSvS 937 (953)
T KOG0736|consen 905 SGTISEEEQESSSV--------------RVTMEDFLKSAKRLQPSVS 937 (953)
T ss_pred hccccccccCCceE--------------EEEHHHHHHHHHhcCCccc
Confidence 2211 1111112 7999999999999887753
No 21
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.84 E-value=4.3e-20 Score=188.73 Aligned_cols=214 Identities=16% Similarity=0.162 Sum_probs=140.2
Q ss_pred cCCCC---CCCCCcHHHHHHHHHHHHHhhccCCCC-eEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCC
Q 010136 119 VSTAP---STIVCREDEQKKVLEFCKKNLEEEKAG-SLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTS 194 (517)
Q Consensus 119 ~~~~p---~~l~gRe~e~~~l~~~L~~~l~~~~~~-~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~ 194 (517)
..|.| ++++|.+..+..|..++. .+..+ .++|+||||||||++|+.+++.+....... ...|..
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~L~~~i~----~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~--------~~pCg~ 77 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGALQNALK----SGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIG--------NEPCNE 77 (484)
T ss_pred HHhCCCCHHHHhChHHHHHHHHHHHH----cCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccC--------ccccCC
Confidence 34444 478999987776666654 34444 589999999999999999999886521100 011222
Q ss_pred CCCHHHHHHHHHHHhCCCCC-CCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCc
Q 010136 195 LTNTSEIFSKILLKLQPRKK-LNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSR 272 (517)
Q Consensus 195 ~~s~~~i~~~i~~~l~~~~~-~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~ 272 (517)
..+...+.......+..-.. ...+ .+.++++.... .....++..|+||||+|.|....++.|...++. +..+
T Consensus 78 C~sC~~i~~g~~~dviEIdaas~~g---Vd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEE---Pp~~ 151 (484)
T PRK14956 78 CTSCLEITKGISSDVLEIDAASNRG---IENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEE---PPAH 151 (484)
T ss_pred CcHHHHHHccCCccceeechhhccc---HHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhc---CCCc
Confidence 22222211111100000000 0001 22233322210 111234568999999999987666776665544 4578
Q ss_pred EEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHH
Q 010136 273 FILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALS 352 (517)
Q Consensus 273 v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ 352 (517)
+++|++++. +..+.+.++|| | +.+.|.+++.+++.++|...+... ...++++++..|++ .+.||+|.|++
T Consensus 152 viFILaTte---~~kI~~TI~SR-C--q~~~f~~ls~~~i~~~L~~i~~~E-gi~~e~eAL~~Ia~---~S~Gd~RdAL~ 221 (484)
T PRK14956 152 IVFILATTE---FHKIPETILSR-C--QDFIFKKVPLSVLQDYSEKLCKIE-NVQYDQEGLFWIAK---KGDGSVRDMLS 221 (484)
T ss_pred eEEEeecCC---hhhccHHHHhh-h--heeeecCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHH---HcCChHHHHHH
Confidence 889988884 67788999999 7 789999999999999999877642 34789999999988 58899999999
Q ss_pred HHHHHHHH
Q 010136 353 VCRSAIEI 360 (517)
Q Consensus 353 ll~~A~~~ 360 (517)
++..++..
T Consensus 222 lLeq~i~~ 229 (484)
T PRK14956 222 FMEQAIVF 229 (484)
T ss_pred HHHHHHHh
Confidence 99987743
No 22
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.84 E-value=8.7e-20 Score=192.86 Aligned_cols=203 Identities=20% Similarity=0.236 Sum_probs=142.1
Q ss_pred cCcCCCC---CCCCCcHHHHHHHHHHHHHhhccCCCC-eEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCC----------
Q 010136 117 LHVSTAP---STIVCREDEQKKVLEFCKKNLEEEKAG-SLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGL---------- 182 (517)
Q Consensus 117 l~~~~~p---~~l~gRe~e~~~l~~~L~~~l~~~~~~-~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~---------- 182 (517)
|...|.| ++++|++..++.|..++. .++.. .++|+|++|||||++++.+++.+.+.....+.
T Consensus 6 LarKYRPqtFdEVIGQe~Vv~~L~~aL~----~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~ 81 (830)
T PRK07003 6 LARKWRPKDFASLVGQEHVVRALTHALD----GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACRE 81 (830)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHh----cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHH
Confidence 4445555 479999997776666644 44444 45899999999999999999998742110000
Q ss_pred ----CCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhcccCch
Q 010136 183 ----QQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITRDRA 257 (517)
Q Consensus 183 ----~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~~~ 257 (517)
....+++++...... .+.+++++... +.....+..|+||||+|.|....++
T Consensus 82 I~~G~h~DviEIDAas~rg------------------------VDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~N 137 (830)
T PRK07003 82 IDEGRFVDYVEMDAASNRG------------------------VDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFN 137 (830)
T ss_pred HhcCCCceEEEeccccccc------------------------HHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHH
Confidence 011344444433222 22233333321 1112345679999999999876677
Q ss_pred HHHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHH
Q 010136 258 VLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCA 337 (517)
Q Consensus 258 ~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia 337 (517)
.|...++.+ ..++.||+++|. ...+.+.++|| | ..+.|.+++.+++.++|...+... ...++++++..|+
T Consensus 138 ALLKtLEEP---P~~v~FILaTtd---~~KIp~TIrSR-C--q~f~Fk~Ls~eeIv~~L~~Il~~E-gI~id~eAL~lIA 207 (830)
T PRK07003 138 AMLKTLEEP---PPHVKFILATTD---PQKIPVTVLSR-C--LQFNLKQMPAGHIVSHLERILGEE-RIAFEPQALRLLA 207 (830)
T ss_pred HHHHHHHhc---CCCeEEEEEECC---hhhccchhhhh-e--EEEecCCcCHHHHHHHHHHHHHHc-CCCCCHHHHHHHH
Confidence 777776653 357788888884 66788899999 7 799999999999999999877642 2468999999998
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHH
Q 010136 338 RKVAAASGDMRKALSVCRSAIEI 360 (517)
Q Consensus 338 ~~~~~~~Gd~R~al~ll~~A~~~ 360 (517)
+ ...||+|.|++++..++.+
T Consensus 208 ~---~A~GsmRdALsLLdQAia~ 227 (830)
T PRK07003 208 R---AAQGSMRDALSLTDQAIAY 227 (830)
T ss_pred H---HcCCCHHHHHHHHHHHHHh
Confidence 8 5789999999999988854
No 23
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.8e-20 Score=186.94 Aligned_cols=221 Identities=18% Similarity=0.203 Sum_probs=155.3
Q ss_pred CCCCCCcHHHH---HHHHHHHHHh-----hccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCC
Q 010136 123 PSTIVCREDEQ---KKVLEFCKKN-----LEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTS 194 (517)
Q Consensus 123 p~~l~gRe~e~---~~l~~~L~~~-----l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~ 194 (517)
.+++-|.++.. ++|.+||++- +.+.-+.++|++||||||||.||++++.+.+ ++|+|.+++.
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~----------VPFF~~sGSE 372 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG----------VPFFYASGSE 372 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC----------CCeEeccccc
Confidence 45667777544 4455555442 2233478999999999999999999986643 6799999988
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCc--------hHHHHHhcc-
Q 010136 195 LTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDR--------AVLHDLFML- 265 (517)
Q Consensus 195 ~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~--------~~L~~l~~~- 265 (517)
+...+. |.. .+.++.+|.. ++...||||||||+|.+..++. ..|.+|+-.
T Consensus 373 FdEm~V-----------------GvG-ArRVRdLF~a---Ak~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEm 431 (752)
T KOG0734|consen 373 FDEMFV-----------------GVG-ARRVRDLFAA---AKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEM 431 (752)
T ss_pred hhhhhh-----------------ccc-HHHHHHHHHH---HHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHh
Confidence 733222 222 6778999983 4577899999999999987632 234454432
Q ss_pred C-CCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChh-HHHHHHHHHHHH
Q 010136 266 T-TFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQ-ALELCARKVAAA 343 (517)
Q Consensus 266 ~-~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~-ai~~ia~~~~~~ 343 (517)
. -..+..|+|||+|| +++.||++|.+......+|.++.++..-..+||...+.+. .++++ ....||+-..+.
T Consensus 432 DGF~qNeGiIvigATN---fpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki---~~~~~VD~~iiARGT~GF 505 (752)
T KOG0734|consen 432 DGFKQNEGIIVIGATN---FPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKI---PLDEDVDPKIIARGTPGF 505 (752)
T ss_pred cCcCcCCceEEEeccC---ChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcC---CcccCCCHhHhccCCCCC
Confidence 1 23456899999999 8999999999874456799999999999999999999865 33322 255677733233
Q ss_pred hCCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhc
Q 010136 344 SGDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTF 410 (517)
Q Consensus 344 ~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~ 410 (517)
+| + ..-++...|+-.|-.++.. .|+|.|++.|-+++.
T Consensus 506 sG-A-dLaNlVNqAAlkAa~dga~----------------------------~VtM~~LE~akDrIl 542 (752)
T KOG0734|consen 506 SG-A-DLANLVNQAALKAAVDGAE----------------------------MVTMKHLEFAKDRIL 542 (752)
T ss_pred ch-H-HHHHHHHHHHHHHHhcCcc----------------------------cccHHHHhhhhhhee
Confidence 33 1 2235666776666666665 688888888877643
No 24
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=4.1e-19 Score=179.96 Aligned_cols=319 Identities=16% Similarity=0.201 Sum_probs=195.6
Q ss_pred CCCCCcHHHHHHHHHHHHHhhc--------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCC
Q 010136 124 STIVCREDEQKKVLEFCKKNLE--------EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSL 195 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~--------~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~ 195 (517)
.++-|-++++.+|.+.+..... -.++.+++|+||||||||.+|++++.+++ +.|+.|++.++
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~----------vPf~~isApei 259 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG----------VPFLSISAPEI 259 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC----------CceEeecchhh
Confidence 4789999999999888765221 12467899999999999999999999875 57999999886
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCch--------HHHH---Hhc
Q 010136 196 TNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRA--------VLHD---LFM 264 (517)
Q Consensus 196 ~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~--------~L~~---l~~ 264 (517)
.+... |.+ ++.++++|++ +....|+|+||||||.+..+++. .+.+ .++
T Consensus 260 vSGvS-----------------GES-EkkiRelF~~---A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD 318 (802)
T KOG0733|consen 260 VSGVS-----------------GES-EKKIRELFDQ---AKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMD 318 (802)
T ss_pred hcccC-----------------ccc-HHHHHHHHHH---HhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhh
Confidence 44222 444 8999999984 35778999999999999987532 2223 333
Q ss_pred cCC---CCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhcc-CCCChhHHHHHHHHH
Q 010136 265 LTT---FPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSY-IVFQPQALELCARKV 340 (517)
Q Consensus 265 ~~~---~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~-~~~~~~ai~~ia~~~ 340 (517)
... ..+..|+|||+|| .++.++|.|++.+...++|.+.-++.++..+||+...+++.. ..| ....+|+.+
T Consensus 319 ~l~~~~~~g~~VlVIgATn---RPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~---d~~qlA~lT 392 (802)
T KOG0733|consen 319 ELSNEKTKGDPVLVIGATN---RPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDF---DFKQLAKLT 392 (802)
T ss_pred cccccccCCCCeEEEecCC---CCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCc---CHHHHHhcC
Confidence 321 2356899999999 477889999886445689999999999999999988876632 122 255667654
Q ss_pred HHHhC-CHHHHHHHHHHHHHHHHHHHHhhhhccc---ccccc---ccchhhhhhhhhhcc---CccccHH-HHHHHHHHh
Q 010136 341 AAASG-DMRKALSVCRSAIEILEAEMRESVSKMN---SASAE---QGLFDQQAASAFEFF---NSQVRVD-HMAVALSNT 409 (517)
Q Consensus 341 ~~~~G-d~R~al~ll~~A~~~a~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~---~~~Vt~~-~v~~a~~~~ 409 (517)
-++-| |+ ..+|+.|+..|..+-........ ..+.+ +.....+ |..... ......+ -+++++.+.
T Consensus 393 PGfVGADL---~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~--S~i~~~~~~~~~~~ld~v~~~~i~~~ 467 (802)
T KOG0733|consen 393 PGFVGADL---MALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQ--SSIKITSNAERPLELDRVVQDAILNN 467 (802)
T ss_pred CCccchhH---HHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccchh--hhhhcCCcccccccHHHHHHHHHHhC
Confidence 44444 33 35788888888766443222100 00000 0010000 000000 0012222 334555554
Q ss_pred ccChhHHHhccCCHHHHHHHHHHHHHHhc----C---CCCccHHHH---HHHHHHHHHhcCCCCCChHHHHHHHHHHhhc
Q 010136 410 FKSPVVDTIKSLPQHQQILLCSAVKFFRG----G---KKDMTVGEL---NKSYMNICKTSLIPPVGTLEFFSMCRVLHDQ 479 (517)
Q Consensus 410 ~~~~~~~~i~~L~~~~k~iL~al~~l~~~----~---~~~~~~~~l---~~~y~~~~~~~~~~~~~~~~~~~~~~~L~~~ 479 (517)
......+.+..|...-.-+..|+....-. | ..++++.+| .+.-.++-. .-+.|+.+.+.+..+.-=.-.
T Consensus 468 ~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~-aI~~PiK~pd~~k~lGi~~Ps 546 (802)
T KOG0733|consen 468 PDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNM-AILAPIKRPDLFKALGIDAPS 546 (802)
T ss_pred CCCcChHHhccceecHHHHHHHHHhcCcchhcccceecCCCChhhcccHHHHHHHHHH-HHhhhccCHHHHHHhCCCCCC
Confidence 44445677777877777788777765422 1 234566555 111111111 123466555555444333345
Q ss_pred Cceeec
Q 010136 480 GVLKVG 485 (517)
Q Consensus 480 glI~~~ 485 (517)
|++-.+
T Consensus 547 GvLL~G 552 (802)
T KOG0733|consen 547 GVLLCG 552 (802)
T ss_pred ceEEeC
Confidence 555443
No 25
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.83 E-value=6.7e-20 Score=187.71 Aligned_cols=221 Identities=16% Similarity=0.168 Sum_probs=154.9
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcc---------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCC
Q 010136 124 STIVCREDEQKKVLEFCKKNLEE---------EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTS 194 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~---------~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~ 194 (517)
.++.|.++++++|.+++...+.. ..+.+++|+||||||||++++++++++. ..++.+.+..
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~----------~~fi~V~~se 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS----------ATFLRVVGSE 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC----------CCEEEEecch
Confidence 47899999999999988643321 2466899999999999999999998764 3578887765
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC-----------chHHHHHh
Q 010136 195 LTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD-----------RAVLHDLF 263 (517)
Q Consensus 195 ~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~-----------~~~L~~l~ 263 (517)
+.+.+. +. ....+..+|.. +....++||||||||.+..+. +..+..++
T Consensus 253 L~~k~~-----------------Ge-~~~~vr~lF~~---A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL 311 (438)
T PTZ00361 253 LIQKYL-----------------GD-GPKLVRELFRV---AEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELL 311 (438)
T ss_pred hhhhhc-----------------ch-HHHHHHHHHHH---HHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHH
Confidence 432211 11 14456666652 234578999999999997532 12344444
Q ss_pred ccCC--CCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChh-HHHHHHHHH
Q 010136 264 MLTT--FPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQ-ALELCARKV 340 (517)
Q Consensus 264 ~~~~--~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~-ai~~ia~~~ 340 (517)
.... .....+.||++||. ++.+++.+.+.......|.|++|+.+++.+|+..++... .+.++ .++.++...
T Consensus 312 ~~Ldg~~~~~~V~VI~ATNr---~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~---~l~~dvdl~~la~~t 385 (438)
T PTZ00361 312 NQLDGFDSRGDVKVIMATNR---IESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKM---TLAEDVDLEEFIMAK 385 (438)
T ss_pred HHHhhhcccCCeEEEEecCC---hHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcC---CCCcCcCHHHHHHhc
Confidence 3321 13457899999995 667788877532235699999999999999999887654 23332 355566544
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhcc
Q 010136 341 AAASGDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFK 411 (517)
Q Consensus 341 ~~~~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~ 411 (517)
...+| ...-.+|+.|+.+|.++++. .|+.+||..|+.++..
T Consensus 386 ~g~sg--AdI~~i~~eA~~~Alr~~r~----------------------------~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 386 DELSG--ADIKAICTEAGLLALRERRM----------------------------KVTQADFRKAKEKVLY 426 (438)
T ss_pred CCCCH--HHHHHHHHHHHHHHHHhcCC----------------------------ccCHHHHHHHHHHHHh
Confidence 44444 23346899999999988766 8999999999998743
No 26
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.83 E-value=4.5e-20 Score=173.54 Aligned_cols=207 Identities=20% Similarity=0.212 Sum_probs=147.9
Q ss_pred CcCCCC---CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCC
Q 010136 118 HVSTAP---STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTS 194 (517)
Q Consensus 118 ~~~~~p---~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~ 194 (517)
.+.|.| +++.|.+..++.|...+.. ...+++++|||||||||+++++++++|... ......++..|++.
T Consensus 27 teKYrPkt~de~~gQe~vV~~L~~a~~~----~~lp~~LFyGPpGTGKTStalafar~L~~~----~~~~~rvl~lnaSd 98 (346)
T KOG0989|consen 27 TEKYRPKTFDELAGQEHVVQVLKNALLR----RILPHYLFYGPPGTGKTSTALAFARALNCE----QLFPCRVLELNASD 98 (346)
T ss_pred HHHhCCCcHHhhcchHHHHHHHHHHHhh----cCCceEEeeCCCCCcHhHHHHHHHHHhcCc----cccccchhhhcccc
Confidence 345555 4789999877777766554 457899999999999999999999999751 11223566677766
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEE
Q 010136 195 LTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFI 274 (517)
Q Consensus 195 ~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~ 274 (517)
......+ ..++ .....+................||||||+|.|....|..|...++-. .....
T Consensus 99 erGisvv----r~Ki----------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~---s~~tr 161 (346)
T KOG0989|consen 99 ERGISVV----REKI----------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDF---SRTTR 161 (346)
T ss_pred cccccch----hhhh----------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhcc---ccceE
Confidence 5433311 0000 00111111111011112334479999999999999999999988763 23556
Q ss_pred EEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHH
Q 010136 275 LIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVC 354 (517)
Q Consensus 275 lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll 354 (517)
+|.|+| +.+++...+.|| | ..+.|+++..+.+...|+..... +...+++++++.|+. .+.||+|+|+..|
T Consensus 162 FiLIcn---ylsrii~pi~SR-C--~KfrFk~L~d~~iv~rL~~Ia~~-E~v~~d~~al~~I~~---~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 162 FILICN---YLSRIIRPLVSR-C--QKFRFKKLKDEDIVDRLEKIASK-EGVDIDDDALKLIAK---ISDGDLRRAITTL 231 (346)
T ss_pred EEEEcC---ChhhCChHHHhh-H--HHhcCCCcchHHHHHHHHHHHHH-hCCCCCHHHHHHHHH---HcCCcHHHHHHHH
Confidence 666789 578888999999 7 78999999999999999876653 335889999999988 4899999999999
Q ss_pred HHHHH
Q 010136 355 RSAIE 359 (517)
Q Consensus 355 ~~A~~ 359 (517)
+.+..
T Consensus 232 qsls~ 236 (346)
T KOG0989|consen 232 QSLSL 236 (346)
T ss_pred HHhhc
Confidence 98875
No 27
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.83 E-value=9.8e-19 Score=181.78 Aligned_cols=197 Identities=23% Similarity=0.290 Sum_probs=133.8
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCC-CeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCC--------------CCceEE
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKA-GSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGL--------------QQPEVF 188 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~-~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~--------------~~~~~v 188 (517)
++++|++...+.|... +..+.. ..++|+||||||||++|+.+++.+.......+. ....++
T Consensus 14 ~divGq~~i~~~L~~~----i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~ 89 (472)
T PRK14962 14 SEVVGQDHVKKLIINA----LKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVI 89 (472)
T ss_pred HHccCcHHHHHHHHHH----HHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccE
Confidence 4799998865555444 444454 458999999999999999999988642110000 012355
Q ss_pred EEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCC
Q 010136 189 SINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF 268 (517)
Q Consensus 189 ~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~ 268 (517)
.+++........+ +.+ ..... .........||||||+|.|....++.|...++.
T Consensus 90 el~aa~~~gid~i-R~i--------------------~~~~~--~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~--- 143 (472)
T PRK14962 90 ELDAASNRGIDEI-RKI--------------------RDAVG--YRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEE--- 143 (472)
T ss_pred EEeCcccCCHHHH-HHH--------------------HHHHh--hChhcCCeEEEEEEChHHhHHHHHHHHHHHHHh---
Confidence 5555432222221 111 11111 011234567999999999976555666555544
Q ss_pred CCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHH
Q 010136 269 PFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMR 348 (517)
Q Consensus 269 ~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R 348 (517)
+...+++|++++. +..+.+++.|| | +.+.|.|++.+++..++..++... ...+++++++++++ ...||+|
T Consensus 144 p~~~vv~Ilattn---~~kl~~~L~SR-~--~vv~f~~l~~~el~~~L~~i~~~e-gi~i~~eal~~Ia~---~s~GdlR 213 (472)
T PRK14962 144 PPSHVVFVLATTN---LEKVPPTIISR-C--QVIEFRNISDELIIKRLQEVAEAE-GIEIDREALSFIAK---RASGGLR 213 (472)
T ss_pred CCCcEEEEEEeCC---hHhhhHHHhcC-c--EEEEECCccHHHHHHHHHHHHHHc-CCCCCHHHHHHHHH---HhCCCHH
Confidence 3457788887773 55788999999 7 699999999999999999887642 24789999999987 4789999
Q ss_pred HHHHHHHHHHHH
Q 010136 349 KALSVCRSAIEI 360 (517)
Q Consensus 349 ~al~ll~~A~~~ 360 (517)
.+++.+..++..
T Consensus 214 ~aln~Le~l~~~ 225 (472)
T PRK14962 214 DALTMLEQVWKF 225 (472)
T ss_pred HHHHHHHHHHHh
Confidence 999999886643
No 28
>PLN03025 replication factor C subunit; Provisional
Probab=99.82 E-value=1.3e-18 Score=174.28 Aligned_cols=199 Identities=21% Similarity=0.310 Sum_probs=140.0
Q ss_pred cCcCCCCC---CCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCC
Q 010136 117 LHVSTAPS---TIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCT 193 (517)
Q Consensus 117 l~~~~~p~---~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~ 193 (517)
|.+.|.|. +++|.++.++.|..+ +..+..++++|+||||||||++++++++++... ++. ..++.+|++
T Consensus 3 w~~kyrP~~l~~~~g~~~~~~~L~~~----~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~----~~~-~~~~eln~s 73 (319)
T PLN03025 3 WVEKYRPTKLDDIVGNEDAVSRLQVI----ARDGNMPNLILSGPPGTGKTTSILALAHELLGP----NYK-EAVLELNAS 73 (319)
T ss_pred hhhhcCCCCHHHhcCcHHHHHHHHHH----HhcCCCceEEEECCCCCCHHHHHHHHHHHHhcc----cCc-cceeeeccc
Confidence 44566774 688999877766655 444566789999999999999999999998532 111 246777776
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcE
Q 010136 194 SLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRF 273 (517)
Q Consensus 194 ~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v 273 (517)
...+...+ +.+...+ -............||+|||+|.|....|+.|...++... ...
T Consensus 74 d~~~~~~v-r~~i~~~-------------------~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~---~~t 130 (319)
T PLN03025 74 DDRGIDVV-RNKIKMF-------------------AQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYS---NTT 130 (319)
T ss_pred ccccHHHH-HHHHHHH-------------------HhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhccc---CCc
Confidence 65443321 1111111 000000012346799999999998888888888886532 233
Q ss_pred EEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHH
Q 010136 274 ILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSV 353 (517)
Q Consensus 274 ~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~l 353 (517)
.+|.++|. ...+.+.++|| + ..+.|.+++.+++..+|...+... ...++++++++++. ...||+|.+++.
T Consensus 131 ~~il~~n~---~~~i~~~L~SR-c--~~i~f~~l~~~~l~~~L~~i~~~e-gi~i~~~~l~~i~~---~~~gDlR~aln~ 200 (319)
T PLN03025 131 RFALACNT---SSKIIEPIQSR-C--AIVRFSRLSDQEILGRLMKVVEAE-KVPYVPEGLEAIIF---TADGDMRQALNN 200 (319)
T ss_pred eEEEEeCC---ccccchhHHHh-h--hcccCCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHH---HcCCCHHHHHHH
Confidence 45556774 55678899999 6 689999999999999999887642 24788999999877 578999999999
Q ss_pred HHHH
Q 010136 354 CRSA 357 (517)
Q Consensus 354 l~~A 357 (517)
++.+
T Consensus 201 Lq~~ 204 (319)
T PLN03025 201 LQAT 204 (319)
T ss_pred HHHH
Confidence 9843
No 29
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.82 E-value=3.3e-19 Score=181.62 Aligned_cols=225 Identities=16% Similarity=0.171 Sum_probs=155.7
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhcc---------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeC
Q 010136 122 APSTIVCREDEQKKVLEFCKKNLEE---------EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINC 192 (517)
Q Consensus 122 ~p~~l~gRe~e~~~l~~~L~~~l~~---------~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~ 192 (517)
..+++.|.+.+.++|.+.+...+.. ..+.+++|+||||||||+++++++.++. ..++.+.+
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~----------~~fi~i~~ 212 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT----------ATFIRVVG 212 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC----------CCEEEEeh
Confidence 3456889999999998887543321 2467899999999999999999998754 35777766
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC-----------chHHHH
Q 010136 193 TSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD-----------RAVLHD 261 (517)
Q Consensus 193 ~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~-----------~~~L~~ 261 (517)
..+.. ... +. ....++.+|.. .....|.||||||+|.+...+ +..+..
T Consensus 213 s~l~~----------k~~-------ge-~~~~lr~lf~~---A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~ 271 (398)
T PTZ00454 213 SEFVQ----------KYL-------GE-GPRMVRDVFRL---ARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLE 271 (398)
T ss_pred HHHHH----------Hhc-------ch-hHHHHHHHHHH---HHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHH
Confidence 43211 110 11 14456677752 235678999999999986432 234566
Q ss_pred HhccCC--CCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHH
Q 010136 262 LFMLTT--FPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARK 339 (517)
Q Consensus 262 l~~~~~--~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~ 339 (517)
++.+.. ....++.||++||. ++.+++++.+.......|.|++++.++...|++..+.... .-.+-.++.++..
T Consensus 272 LL~~ld~~~~~~~v~VI~aTN~---~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~--l~~dvd~~~la~~ 346 (398)
T PTZ00454 272 LLNQMDGFDQTTNVKVIMATNR---ADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMN--LSEEVDLEDFVSR 346 (398)
T ss_pred HHHHhhccCCCCCEEEEEecCC---chhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCC--CCcccCHHHHHHH
Confidence 665422 13357889999994 6778888876322346899999999999999997776542 1122335666665
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccC
Q 010136 340 VAAASGDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKS 412 (517)
Q Consensus 340 ~~~~~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~ 412 (517)
+...+ ......+|+.|...|.++++. .|+.+||.+|+.++...
T Consensus 347 t~g~s--gaDI~~l~~eA~~~A~r~~~~----------------------------~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 347 PEKIS--AADIAAICQEAGMQAVRKNRY----------------------------VILPKDFEKGYKTVVRK 389 (398)
T ss_pred cCCCC--HHHHHHHHHHHHHHHHHcCCC----------------------------ccCHHHHHHHHHHHHhc
Confidence 44433 344557999999999887765 79999999999987543
No 30
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2e-19 Score=163.86 Aligned_cols=221 Identities=19% Similarity=0.209 Sum_probs=160.3
Q ss_pred CCCCcHHHHHHHHHHHHHhhc---------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCC
Q 010136 125 TIVCREDEQKKVLEFCKKNLE---------EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSL 195 (517)
Q Consensus 125 ~l~gRe~e~~~l~~~L~~~l~---------~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~ 195 (517)
-+-|.++++++|.+.+.--++ -..+.++++|||||||||.++++++..-. +.|+.|+++.+
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~----------c~firvsgsel 217 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTD----------CTFIRVSGSEL 217 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcc----------eEEEEechHHH
Confidence 466788999999888754332 23578999999999999999999986532 57999998765
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC-----------chHHHHHhc
Q 010136 196 TNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD-----------RAVLHDLFM 264 (517)
Q Consensus 196 ~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~-----------~~~L~~l~~ 264 (517)
...+- |.. ...++++|- +++...|.|||+||||.+.+.+ |..+..|++
T Consensus 218 vqk~i-----------------geg-srmvrelfv---marehapsiifmdeidsigs~r~e~~~ggdsevqrtmlelln 276 (404)
T KOG0728|consen 218 VQKYI-----------------GEG-SRMVRELFV---MAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLN 276 (404)
T ss_pred HHHHh-----------------hhh-HHHHHHHHH---HHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHH
Confidence 32222 222 567888886 6678889999999999997542 233444443
Q ss_pred cC--CCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHH
Q 010136 265 LT--TFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAA 342 (517)
Q Consensus 265 ~~--~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~ 342 (517)
.. .....++-+|.++|.+|. ++|++.+.....+.|.|+|++.+...+||+-.-.+. +..---.+..+|+++.+
T Consensus 277 qldgfeatknikvimatnridi---ld~allrpgridrkiefp~p~e~ar~~ilkihsrkm--nl~rgi~l~kiaekm~g 351 (404)
T KOG0728|consen 277 QLDGFEATKNIKVIMATNRIDI---LDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKM--NLTRGINLRKIAEKMPG 351 (404)
T ss_pred hccccccccceEEEEecccccc---ccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhh--chhcccCHHHHHHhCCC
Confidence 21 123468889999997664 567777664556799999999999999998655433 11112236778887777
Q ss_pred HhCCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhcc
Q 010136 343 ASGDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFK 411 (517)
Q Consensus 343 ~~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~ 411 (517)
.+|.-- -.+|.+|..+|.++.+- .||.+||+-|+.++..
T Consensus 352 asgaev--k~vcteagm~alrerrv----------------------------hvtqedfemav~kvm~ 390 (404)
T KOG0728|consen 352 ASGAEV--KGVCTEAGMYALRERRV----------------------------HVTQEDFEMAVAKVMQ 390 (404)
T ss_pred Cccchh--hhhhhhhhHHHHHHhhc----------------------------cccHHHHHHHHHHHHh
Confidence 777522 35899999999999887 8999999999988754
No 31
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.81 E-value=1.2e-18 Score=182.14 Aligned_cols=202 Identities=20% Similarity=0.258 Sum_probs=140.7
Q ss_pred cCcCCCC---CCCCCcHHHHHHHHHHHHHhhccCCCCe-EEEEcCCCCcHHHHHHHHHHHHHHHHH--hcCC--------
Q 010136 117 LHVSTAP---STIVCREDEQKKVLEFCKKNLEEEKAGS-LYVCGCPGTGKSLSMEKVQHYLVDWAK--EAGL-------- 182 (517)
Q Consensus 117 l~~~~~p---~~l~gRe~e~~~l~~~L~~~l~~~~~~~-lli~G~pGtGKT~l~~~v~~~l~~~~~--~~~~-------- 182 (517)
|...|.| ++++|.+...+.|..++. .++..+ ++|+|++|||||++++.+++.+.+... +.+.
T Consensus 6 LarKYRPqtFddVIGQe~vv~~L~~al~----~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C 81 (700)
T PRK12323 6 LARKWRPRDFTTLVGQEHVVRALTHALE----QQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQC 81 (700)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHH----hCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCccc
Confidence 3344555 479999997776666654 345454 689999999999999999999875211 0000
Q ss_pred ---------CCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhc
Q 010136 183 ---------QQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLI 252 (517)
Q Consensus 183 ---------~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~ 252 (517)
....++++++....+ .+.+++++... +....++..|+||||+|.|.
T Consensus 82 ~sC~~I~aG~hpDviEIdAas~~g------------------------VDdIReLie~~~~~P~~gr~KViIIDEah~Ls 137 (700)
T PRK12323 82 RACTEIDAGRFVDYIEMDAASNRG------------------------VDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT 137 (700)
T ss_pred HHHHHHHcCCCCcceEecccccCC------------------------HHHHHHHHHHHHhchhcCCceEEEEEChHhcC
Confidence 001334444332221 23333333321 11224566899999999997
Q ss_pred ccCchHHHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhH
Q 010136 253 TRDRAVLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQA 332 (517)
Q Consensus 253 ~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~a 332 (517)
...++.|...++. +..++.||+++|. +.++.+.++|| | +.+.|.+++.+++.+.|...+... ...+++++
T Consensus 138 ~~AaNALLKTLEE---PP~~v~FILaTte---p~kLlpTIrSR-C--q~f~f~~ls~eei~~~L~~Il~~E-gi~~d~eA 207 (700)
T PRK12323 138 NHAFNAMLKTLEE---PPEHVKFILATTD---PQKIPVTVLSR-C--LQFNLKQMPPGHIVSHLDAILGEE-GIAHEVNA 207 (700)
T ss_pred HHHHHHHHHhhcc---CCCCceEEEEeCC---hHhhhhHHHHH-H--HhcccCCCChHHHHHHHHHHHHHc-CCCCCHHH
Confidence 7666666666654 4467788888884 67788999999 7 799999999999999999877632 24678899
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 010136 333 LELCARKVAAASGDMRKALSVCRSAIE 359 (517)
Q Consensus 333 i~~ia~~~~~~~Gd~R~al~ll~~A~~ 359 (517)
++.|++ ...|++|.|++++..++.
T Consensus 208 L~~IA~---~A~Gs~RdALsLLdQaia 231 (700)
T PRK12323 208 LRLLAQ---AAQGSMRDALSLTDQAIA 231 (700)
T ss_pred HHHHHH---HcCCCHHHHHHHHHHHHH
Confidence 999887 589999999999988764
No 32
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.80 E-value=4.8e-19 Score=184.11 Aligned_cols=224 Identities=14% Similarity=0.126 Sum_probs=157.1
Q ss_pred CCCCCCcHHHHHHHHHHHHHhh------ccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCC
Q 010136 123 PSTIVCREDEQKKVLEFCKKNL------EEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLT 196 (517)
Q Consensus 123 p~~l~gRe~e~~~l~~~L~~~l------~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~ 196 (517)
.+++.|.+...+.+......+. .-..+.+++|+||||||||+++++++.+++ ..++.+++..+.
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~----------~~~~~l~~~~l~ 296 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ----------LPLLRLDVGKLF 296 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC----------CCEEEEEhHHhc
Confidence 3468888876666655332211 113467899999999999999999998864 468888875432
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC---------chHHHHHhccCC
Q 010136 197 NTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD---------RAVLHDLFMLTT 267 (517)
Q Consensus 197 s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~---------~~~L~~l~~~~~ 267 (517)
+.+ .|. ....++++|.. .....|+||||||||.+.... ..++..++.|..
T Consensus 297 ~~~-----------------vGe-se~~l~~~f~~---A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~ 355 (489)
T CHL00195 297 GGI-----------------VGE-SESRMRQMIRI---AEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLS 355 (489)
T ss_pred ccc-----------------cCh-HHHHHHHHHHH---HHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHh
Confidence 211 122 25677777762 234578999999999986531 134555666655
Q ss_pred CCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhC-C
Q 010136 268 FPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASG-D 346 (517)
Q Consensus 268 ~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~G-d 346 (517)
....++.||++||. ++.+++.+.+.......|+|+.++.++..+|++..+.........+..++.+|+.+.+++| |
T Consensus 356 ~~~~~V~vIaTTN~---~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAd 432 (489)
T CHL00195 356 EKKSPVFVVATANN---IDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAE 432 (489)
T ss_pred cCCCceEEEEecCC---hhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHH
Confidence 45678999999995 6678888876322246899999999999999999987654333445567888887666555 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccC
Q 010136 347 MRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKS 412 (517)
Q Consensus 347 ~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~ 412 (517)
++ .+|..|...|..+++ .++.+|+..|+..+.+.
T Consensus 433 I~---~lv~eA~~~A~~~~~-----------------------------~lt~~dl~~a~~~~~Pl 466 (489)
T CHL00195 433 IE---QSIIEAMYIAFYEKR-----------------------------EFTTDDILLALKQFIPL 466 (489)
T ss_pred HH---HHHHHHHHHHHHcCC-----------------------------CcCHHHHHHHHHhcCCC
Confidence 54 567788777765443 58999999999988764
No 33
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=3.1e-18 Score=177.19 Aligned_cols=196 Identities=18% Similarity=0.220 Sum_probs=140.2
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCC-CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcC--------------CCCceEE
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEK-AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAG--------------LQQPEVF 188 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~-~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~--------------~~~~~~v 188 (517)
++++|++...+.|... +..++ +.+++|+||+|+|||++|+.+++.+.+...... .....++
T Consensus 13 ~dliGQe~vv~~L~~a----~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ 88 (491)
T PRK14964 13 KDLVGQDVLVRILRNA----FTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVI 88 (491)
T ss_pred HHhcCcHHHHHHHHHH----HHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEE
Confidence 4789999866655544 44444 457999999999999999999998764321100 1124677
Q ss_pred EEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhcccCchHHHHHhccCC
Q 010136 189 SINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTT 267 (517)
Q Consensus 189 ~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~ 267 (517)
++++.+..+..++ +.++... ......+..|+||||+|.|....++.|...++.+
T Consensus 89 eidaas~~~vddI------------------------R~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEeP- 143 (491)
T PRK14964 89 EIDAASNTSVDDI------------------------KVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEP- 143 (491)
T ss_pred EEecccCCCHHHH------------------------HHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCC-
Confidence 7777655444332 2222110 1112345679999999999876677777766653
Q ss_pred CCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCH
Q 010136 268 FPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDM 347 (517)
Q Consensus 268 ~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~ 347 (517)
...+.+|++++. ...+.+.++|| | ..+.|.+++.+++.+.+...+... ...+++++++++++ ...||+
T Consensus 144 --p~~v~fIlatte---~~Kl~~tI~SR-c--~~~~f~~l~~~el~~~L~~ia~~E-gi~i~~eAL~lIa~---~s~Gsl 211 (491)
T PRK14964 144 --APHVKFILATTE---VKKIPVTIISR-C--QRFDLQKIPTDKLVEHLVDIAKKE-NIEHDEESLKLIAE---NSSGSM 211 (491)
T ss_pred --CCCeEEEEEeCC---hHHHHHHHHHh-h--eeeecccccHHHHHHHHHHHHHHc-CCCCCHHHHHHHHH---HcCCCH
Confidence 456777877774 45677889999 7 789999999999999999887643 24789999999988 468999
Q ss_pred HHHHHHHHHHHHH
Q 010136 348 RKALSVCRSAIEI 360 (517)
Q Consensus 348 R~al~ll~~A~~~ 360 (517)
|.|++++..++.+
T Consensus 212 R~alslLdqli~y 224 (491)
T PRK14964 212 RNALFLLEQAAIY 224 (491)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988754
No 34
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=1.9e-18 Score=186.24 Aligned_cols=195 Identities=19% Similarity=0.228 Sum_probs=136.0
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCeE-EEEcCCCCcHHHHHHHHHHHHHHHHHhcCCC--------------CceEE
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGSL-YVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQ--------------QPEVF 188 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~l-li~G~pGtGKT~l~~~v~~~l~~~~~~~~~~--------------~~~~v 188 (517)
++++|.+..++.|..++ ..++..+. +|+||||||||++++.+++.+.+.....+.+ ...++
T Consensus 16 ddIIGQe~Iv~~LknaI----~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dvi 91 (944)
T PRK14949 16 EQMVGQSHVLHALTNAL----TQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLI 91 (944)
T ss_pred HHhcCcHHHHHHHHHHH----HhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEE
Confidence 57999999777666554 44556665 7999999999999999999987531100000 01123
Q ss_pred EEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhcccCchHHHHHhccCC
Q 010136 189 SINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTT 267 (517)
Q Consensus 189 ~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~ 267 (517)
++++..... .+.++.+.... .....++..|+||||+|.|....++.|...++.
T Consensus 92 EidAas~~k------------------------VDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEE-- 145 (944)
T PRK14949 92 EVDAASRTK------------------------VDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEE-- 145 (944)
T ss_pred EeccccccC------------------------HHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc--
Confidence 333321111 22222222210 111235568999999999987777777777765
Q ss_pred CCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCH
Q 010136 268 FPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDM 347 (517)
Q Consensus 268 ~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~ 347 (517)
+..++.+|++++. ...+.+.++|| | .++.|.+++.+++.++|..++... ...+++++++.|++ ...|++
T Consensus 146 -PP~~vrFILaTTe---~~kLl~TIlSR-C--q~f~fkpLs~eEI~~~L~~il~~E-gI~~edeAL~lIA~---~S~Gd~ 214 (944)
T PRK14949 146 -PPEHVKFLLATTD---PQKLPVTVLSR-C--LQFNLKSLTQDEIGTQLNHILTQE-QLPFEAEALTLLAK---AANGSM 214 (944)
T ss_pred -cCCCeEEEEECCC---chhchHHHHHh-h--eEEeCCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHH---HcCCCH
Confidence 3457777777774 55678889998 7 799999999999999999888642 34789999999987 589999
Q ss_pred HHHHHHHHHHHH
Q 010136 348 RKALSVCRSAIE 359 (517)
Q Consensus 348 R~al~ll~~A~~ 359 (517)
|.|+++|..|+.
T Consensus 215 R~ALnLLdQala 226 (944)
T PRK14949 215 RDALSLTDQAIA 226 (944)
T ss_pred HHHHHHHHHHHH
Confidence 999999988773
No 35
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=3.2e-18 Score=174.09 Aligned_cols=202 Identities=18% Similarity=0.202 Sum_probs=135.6
Q ss_pred CcCCCC---CCCCCcHHHHHHHHHHHHHhhccCCCC-eEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCC----------
Q 010136 118 HVSTAP---STIVCREDEQKKVLEFCKKNLEEEKAG-SLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQ---------- 183 (517)
Q Consensus 118 ~~~~~p---~~l~gRe~e~~~l~~~L~~~l~~~~~~-~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~---------- 183 (517)
...|.| ++++|++..++.+...+. .++.+ .++|+||||+|||++++.+++.+.......+.+
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~~l~~~~~----~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~ 82 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVTAISNGLS----LGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEI 82 (363)
T ss_pred HHHhCCCchhhccChHHHHHHHHHHHH----cCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 334444 479999997776665544 34444 468999999999999999999886321100000
Q ss_pred ----CceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhcccCchH
Q 010136 184 ----QPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITRDRAV 258 (517)
Q Consensus 184 ----~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~~~~ 258 (517)
.+.++++++..... .+.++.++... .........|+||||+|.+....++.
T Consensus 83 ~~~~~~d~~~~~~~~~~~------------------------v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~na 138 (363)
T PRK14961 83 EKGLCLDLIEIDAASRTK------------------------VEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNA 138 (363)
T ss_pred hcCCCCceEEecccccCC------------------------HHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHH
Confidence 01233333221111 22333333210 11123455799999999997655666
Q ss_pred HHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHH
Q 010136 259 LHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCAR 338 (517)
Q Consensus 259 L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~ 338 (517)
|...++.+ ...+.+|++++. .+.+.+.+.|| | ..+.|.|++.+++.++|..++... ...+++++++++++
T Consensus 139 LLk~lEe~---~~~~~fIl~t~~---~~~l~~tI~SR-c--~~~~~~~l~~~el~~~L~~~~~~~-g~~i~~~al~~ia~ 208 (363)
T PRK14961 139 LLKTLEEP---PQHIKFILATTD---VEKIPKTILSR-C--LQFKLKIISEEKIFNFLKYILIKE-SIDTDEYALKLIAY 208 (363)
T ss_pred HHHHHhcC---CCCeEEEEEcCC---hHhhhHHHHhh-c--eEEeCCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHH
Confidence 66666543 346667777764 45678899999 6 689999999999999999888753 24689999999987
Q ss_pred HHHHHhCCHHHHHHHHHHHHHH
Q 010136 339 KVAAASGDMRKALSVCRSAIEI 360 (517)
Q Consensus 339 ~~~~~~Gd~R~al~ll~~A~~~ 360 (517)
.+.||+|.|++++..++..
T Consensus 209 ---~s~G~~R~al~~l~~~~~~ 227 (363)
T PRK14961 209 ---HAHGSMRDALNLLEHAINL 227 (363)
T ss_pred ---HcCCCHHHHHHHHHHHHHh
Confidence 4689999999999988743
No 36
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=1.9e-18 Score=182.13 Aligned_cols=267 Identities=17% Similarity=0.205 Sum_probs=167.5
Q ss_pred CcCCCC---CCCCCcHHHHHHHHHHHHHhhccCC-CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCC-----------
Q 010136 118 HVSTAP---STIVCREDEQKKVLEFCKKNLEEEK-AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGL----------- 182 (517)
Q Consensus 118 ~~~~~p---~~l~gRe~e~~~l~~~L~~~l~~~~-~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~----------- 182 (517)
...|.| ++++|.+...+.|..++. .++ ...++|+||||||||++++.+++.+.+.....+.
T Consensus 7 a~KyRP~sf~dIiGQe~v~~~L~~ai~----~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i 82 (624)
T PRK14959 7 TARYRPQTFAEVAGQETVKAILSRAAQ----ENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKV 82 (624)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHHH----cCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHH
Confidence 334444 478999887666655544 333 5678899999999999999999998752110000
Q ss_pred ---CCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHH
Q 010136 183 ---QQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVL 259 (517)
Q Consensus 183 ---~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L 259 (517)
....++++++........ .+.|.+.+.. ........||||||+|.|....++.|
T Consensus 83 ~~g~hpDv~eId~a~~~~Id~---------------------iR~L~~~~~~--~p~~g~~kVIIIDEad~Lt~~a~naL 139 (624)
T PRK14959 83 TQGMHVDVVEIDGASNRGIDD---------------------AKRLKEAIGY--APMEGRYKVFIIDEAHMLTREAFNAL 139 (624)
T ss_pred hcCCCCceEEEecccccCHHH---------------------HHHHHHHHHh--hhhcCCceEEEEEChHhCCHHHHHHH
Confidence 112344444432211111 1223333321 11234567999999999976656666
Q ss_pred HHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHH
Q 010136 260 HDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARK 339 (517)
Q Consensus 260 ~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~ 339 (517)
...++. +...+++|+++|. +..+.+.++|| | ..|.|.+++.+++..+|...+... ...+++++++++++
T Consensus 140 Lk~LEE---P~~~~ifILaTt~---~~kll~TI~SR-c--q~i~F~pLs~~eL~~~L~~il~~e-gi~id~eal~lIA~- 208 (624)
T PRK14959 140 LKTLEE---PPARVTFVLATTE---PHKFPVTIVSR-C--QHFTFTRLSEAGLEAHLTKVLGRE-GVDYDPAAVRLIAR- 208 (624)
T ss_pred HHHhhc---cCCCEEEEEecCC---hhhhhHHHHhh-h--hccccCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHH-
Confidence 555544 3457888888884 55667778898 6 689999999999999999877643 23589999999988
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccChhHHHhc
Q 010136 340 VAAASGDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSPVVDTIK 419 (517)
Q Consensus 340 ~~~~~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~~~~~i~ 419 (517)
...||+|.|++++..++ +. +.. .|+.++|.+++.......+.+.+.
T Consensus 209 --~s~GdlR~Al~lLeqll--~~--g~~----------------------------~It~d~V~~~lg~~~~e~vfeLl~ 254 (624)
T PRK14959 209 --RAAGSVRDSMSLLGQVL--AL--GES----------------------------RLTIDGARGVLGLAGQELFLRLME 254 (624)
T ss_pred --HcCCCHHHHHHHHHHHH--Hh--cCC----------------------------CcCHHHHHHHhCCCCHHHHHHHHH
Confidence 46799999999998754 11 211 588888888876554444555555
Q ss_pred cCCHHHHHHHHHHHHH-HhcCC-CCccHHHHHHHHHHHH
Q 010136 420 SLPQHQQILLCSAVKF-FRGGK-KDMTVGELNKSYMNIC 456 (517)
Q Consensus 420 ~L~~~~k~iL~al~~l-~~~~~-~~~~~~~l~~~y~~~~ 456 (517)
.|..+....+..++.. ...+. ....+..|+..|.++.
T Consensus 255 AL~~~D~~aal~~l~~Ll~~g~d~~~iL~~Ll~~~RdLL 293 (624)
T PRK14959 255 ALAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNLF 293 (624)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 5544333333333332 22222 1233556666666543
No 37
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.80 E-value=7.4e-19 Score=179.25 Aligned_cols=225 Identities=19% Similarity=0.232 Sum_probs=152.1
Q ss_pred cCCCCCCCCCcHHHHHHHHHHHHHhhcc---------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEE
Q 010136 119 VSTAPSTIVCREDEQKKVLEFCKKNLEE---------EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFS 189 (517)
Q Consensus 119 ~~~~p~~l~gRe~e~~~l~~~L~~~l~~---------~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~ 189 (517)
+.+.++++.|+++++++|.+++...+.. ..+.+++|+||||||||+++++++.++. ..++.
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~----------~~~~~ 186 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN----------ATFIR 186 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC----------CCEEe
Confidence 3455668999999999999988654332 2367899999999999999999988764 24566
Q ss_pred EeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC-----------chH
Q 010136 190 INCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD-----------RAV 258 (517)
Q Consensus 190 vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~-----------~~~ 258 (517)
+.+..+ ..... + .....+..+|.. .....+.||||||+|.+.... +..
T Consensus 187 v~~~~l----------~~~~~-------g-~~~~~i~~~f~~---a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~ 245 (364)
T TIGR01242 187 VVGSEL----------VRKYI-------G-EGARLVREIFEL---AKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRT 245 (364)
T ss_pred cchHHH----------HHHhh-------h-HHHHHHHHHHHH---HHhcCCcEEEhhhhhhhccccccCCCCccHHHHHH
Confidence 654322 11110 1 113445556652 234567899999999996431 234
Q ss_pred HHHHhccCC--CCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHH
Q 010136 259 LHDLFMLTT--FPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELC 336 (517)
Q Consensus 259 L~~l~~~~~--~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~i 336 (517)
+..++.... ....++.||+++|. ++.+++.+.+.......|.|++|+.++..+|++..+.... .-.+..++.+
T Consensus 246 l~~ll~~ld~~~~~~~v~vI~ttn~---~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~--l~~~~~~~~l 320 (364)
T TIGR01242 246 LMQLLAELDGFDPRGNVKVIAATNR---PDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMK--LAEDVDLEAI 320 (364)
T ss_pred HHHHHHHhhCCCCCCCEEEEEecCC---hhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCC--CCccCCHHHH
Confidence 555554321 12357899999995 4567777775311235899999999999999998776532 1112236667
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHh
Q 010136 337 ARKVAAASGDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNT 409 (517)
Q Consensus 337 a~~~~~~~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~ 409 (517)
++.+...+| +....+|+.|+..|.+++.. .|+.+||.+|+..+
T Consensus 321 a~~t~g~sg--~dl~~l~~~A~~~a~~~~~~----------------------------~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 321 AKMTEGASG--ADLKAICTEAGMFAIREERD----------------------------YVTMDDFIKAVEKV 363 (364)
T ss_pred HHHcCCCCH--HHHHHHHHHHHHHHHHhCCC----------------------------ccCHHHHHHHHHHh
Confidence 776544444 23336899999999887665 79999999999875
No 38
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=4.2e-18 Score=176.66 Aligned_cols=240 Identities=18% Similarity=0.292 Sum_probs=187.3
Q ss_pred CCchhhhhhhhccCCCCCCC-ChhHHHHHHhhcCcCCCCCCCCCcHHHHHHHHHHHHHh--hccCCCCeEEEEcCCCCcH
Q 010136 86 SPVKKKLCDSFKSKPNWNPQ-DVEQMSAVREALHVSTAPSTIVCREDEQKKVLEFCKKN--LEEEKAGSLYVCGCPGTGK 162 (517)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~p~~l~gRe~e~~~l~~~L~~~--l~~~~~~~lli~G~pGtGK 162 (517)
....+.|-+++..-||+... +--++..+++.|+.++ +|.++..++|.++|.-. ...-.++.++|+||||+||
T Consensus 289 ~~ViRnYlDwll~lPW~~~sk~~~Dl~~a~~iLd~dH-----YGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGK 363 (782)
T COG0466 289 ATVIRNYLDWLLDLPWGKRSKDKLDLKKAEKILDKDH-----YGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGK 363 (782)
T ss_pred HHHHHHHHHHHHhCCCccccchhhhHHHHHHHhcccc-----cCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCc
Confidence 34466788899998887665 4558899999999987 89999999999997543 3334577899999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEE
Q 010136 163 SLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMML 242 (517)
Q Consensus 163 T~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v 242 (517)
|++++.+|+.+++ .|+.++.....+..+ +.|+...+-|..+.+.++.+-. ....+.|
T Consensus 364 TSLgkSIA~al~R----------kfvR~sLGGvrDEAE--------IRGHRRTYIGamPGrIiQ~mkk-----a~~~NPv 420 (782)
T COG0466 364 TSLGKSIAKALGR----------KFVRISLGGVRDEAE--------IRGHRRTYIGAMPGKIIQGMKK-----AGVKNPV 420 (782)
T ss_pred hhHHHHHHHHhCC----------CEEEEecCccccHHH--------hccccccccccCChHHHHHHHH-----hCCcCCe
Confidence 9999999999875 699999888877665 5888888889888888888765 3555679
Q ss_pred EEEeCcchhcccC----chHHHHHhccCC------------CCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCC
Q 010136 243 IIADELDYLITRD----RAVLHDLFMLTT------------FPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRA 306 (517)
Q Consensus 243 I~iDEiD~L~~~~----~~~L~~l~~~~~------------~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p 306 (517)
++|||||.+...- ..+|.+.++-.+ ..-++|.||+++|+++ .+...|..| + +.|.+..
T Consensus 421 ~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~---tIP~PLlDR-M--EiI~lsg 494 (782)
T COG0466 421 FLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLD---TIPAPLLDR-M--EVIRLSG 494 (782)
T ss_pred EEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccc---cCChHHhcc-e--eeeeecC
Confidence 9999999998753 256666665422 1347999999999754 445566676 7 8999999
Q ss_pred CCHHHHHHHHHHHHh-------hhc--cCCCChhHHHHHHHHHHHHhC--CH-HHHHHHHHHHHH
Q 010136 307 YSKDQIIRILQERLM-------ELS--YIVFQPQALELCARKVAAASG--DM-RKALSVCRSAIE 359 (517)
Q Consensus 307 ~~~~e~~~IL~~rl~-------~~~--~~~~~~~ai~~ia~~~~~~~G--d~-R~al~ll~~A~~ 359 (517)
|+.+|-.+|.+..|- ++. .-.|+++++..+.+.+.+..| ++ |..-.+||.++.
T Consensus 495 Yt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~~ 559 (782)
T COG0466 495 YTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKICRKAAK 559 (782)
T ss_pred CChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHH
Confidence 999999999998772 222 357789999999999888877 34 444467877764
No 39
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=4.3e-18 Score=178.50 Aligned_cols=201 Identities=18% Similarity=0.194 Sum_probs=139.7
Q ss_pred CcCCCC---CCCCCcHHHHHHHHHHHHHhhccCC-CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcC------------
Q 010136 118 HVSTAP---STIVCREDEQKKVLEFCKKNLEEEK-AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAG------------ 181 (517)
Q Consensus 118 ~~~~~p---~~l~gRe~e~~~l~~~L~~~l~~~~-~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~------------ 181 (517)
...|.| ++++|++...+.|..++. .++ +..++|+||||||||++|+.+++.+.+.....+
T Consensus 6 arKyRPktFddVIGQe~vv~~L~~aI~----~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I 81 (702)
T PRK14960 6 ARKYRPRNFNELVGQNHVSRALSSALE----RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAV 81 (702)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHH----cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHH
Confidence 334455 479999998777766655 344 456799999999999999999999864211000
Q ss_pred --CCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhcccCchH
Q 010136 182 --LQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITRDRAV 258 (517)
Q Consensus 182 --~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~~~~ 258 (517)
...+.++.+++..... .+.+++++... +....++..|+||||+|.|....++.
T Consensus 82 ~~g~hpDviEIDAAs~~~------------------------VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NA 137 (702)
T PRK14960 82 NEGRFIDLIEIDAASRTK------------------------VEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNA 137 (702)
T ss_pred hcCCCCceEEecccccCC------------------------HHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHH
Confidence 0112345555543222 22233333210 11123456799999999998777777
Q ss_pred HHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHH
Q 010136 259 LHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCAR 338 (517)
Q Consensus 259 L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~ 338 (517)
|..+++.+ ...+.+|+++++ +..+.+.+.|| | .++.|.+++.+++.+.|...+... ...++++++..+++
T Consensus 138 LLKtLEEP---P~~v~FILaTtd---~~kIp~TIlSR-C--q~feFkpLs~eEI~k~L~~Il~kE-gI~id~eAL~~IA~ 207 (702)
T PRK14960 138 LLKTLEEP---PEHVKFLFATTD---PQKLPITVISR-C--LQFTLRPLAVDEITKHLGAILEKE-QIAADQDAIWQIAE 207 (702)
T ss_pred HHHHHhcC---CCCcEEEEEECC---hHhhhHHHHHh-h--heeeccCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHH
Confidence 77777653 346677777774 45566788888 7 799999999999999999887642 24789999999988
Q ss_pred HHHHHhCCHHHHHHHHHHHHH
Q 010136 339 KVAAASGDMRKALSVCRSAIE 359 (517)
Q Consensus 339 ~~~~~~Gd~R~al~ll~~A~~ 359 (517)
.+.||+|.|++++..++.
T Consensus 208 ---~S~GdLRdALnLLDQaIa 225 (702)
T PRK14960 208 ---SAQGSLRDALSLTDQAIA 225 (702)
T ss_pred ---HcCCCHHHHHHHHHHHHH
Confidence 578999999999988764
No 40
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.79 E-value=1.8e-18 Score=165.60 Aligned_cols=195 Identities=17% Similarity=0.242 Sum_probs=139.8
Q ss_pred CCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHH
Q 010136 125 TIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSK 204 (517)
Q Consensus 125 ~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~ 204 (517)
+++|++..+.+ ...|...+..++.++++++||||||||++++.++..-.. ..+.||.+++..-.+... +.
T Consensus 139 dyvGQ~hlv~q-~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~-------~SyrfvelSAt~a~t~dv--R~ 208 (554)
T KOG2028|consen 139 DYVGQSHLVGQ-DGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKK-------HSYRFVELSATNAKTNDV--RD 208 (554)
T ss_pred HhcchhhhcCc-chHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCC-------CceEEEEEeccccchHHH--HH
Confidence 57788776665 566777888889999999999999999999998765332 225688888776433211 11
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCCCc
Q 010136 205 ILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAIDL 284 (517)
Q Consensus 205 i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~~ 284 (517)
++++- ++.. .-.++..|||||||+.+....|+.+ ++...+..|++||+|+ .+-
T Consensus 209 ife~a----------------q~~~-----~l~krkTilFiDEiHRFNksQQD~f-----LP~VE~G~I~lIGATT-ENP 261 (554)
T KOG2028|consen 209 IFEQA----------------QNEK-----SLTKRKTILFIDEIHRFNKSQQDTF-----LPHVENGDITLIGATT-ENP 261 (554)
T ss_pred HHHHH----------------HHHH-----hhhcceeEEEeHHhhhhhhhhhhcc-----cceeccCceEEEeccc-CCC
Confidence 11111 1111 1245668999999999977666665 3445678899999554 444
Q ss_pred chhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhh----------cc--CCCChhHHHHHHHHHHHHhCCHHHHHH
Q 010136 285 ADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMEL----------SY--IVFQPQALELCARKVAAASGDMRKALS 352 (517)
Q Consensus 285 ~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~----------~~--~~~~~~ai~~ia~~~~~~~Gd~R~al~ 352 (517)
.-++...|.|| | .++.+.+++.+.+..||...+..+ +. ..+++.++++++. -+.||+|.|++
T Consensus 262 SFqln~aLlSR-C--~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~---lsdGDaR~aLN 335 (554)
T KOG2028|consen 262 SFQLNAALLSR-C--RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAY---LSDGDARAALN 335 (554)
T ss_pred ccchhHHHHhc-c--ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHH---hcCchHHHHHH
Confidence 44678899999 7 799999999999999999755422 11 2467888999877 47899999999
Q ss_pred HHHHHHHHHH
Q 010136 353 VCRSAIEILE 362 (517)
Q Consensus 353 ll~~A~~~a~ 362 (517)
.|.-++.++.
T Consensus 336 ~Lems~~m~~ 345 (554)
T KOG2028|consen 336 ALEMSLSMFC 345 (554)
T ss_pred HHHHHHHHHH
Confidence 9988865443
No 41
>CHL00176 ftsH cell division protein; Validated
Probab=99.79 E-value=3.3e-18 Score=183.41 Aligned_cols=223 Identities=16% Similarity=0.171 Sum_probs=156.9
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHhhc--------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEe
Q 010136 120 STAPSTIVCREDEQKKVLEFCKKNLE--------EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSIN 191 (517)
Q Consensus 120 ~~~p~~l~gRe~e~~~l~~~L~~~l~--------~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn 191 (517)
....+++.|.++..+++.+.+..... ...+.+++|+||||||||+++++++.++. ..+++++
T Consensus 179 ~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~----------~p~i~is 248 (638)
T CHL00176 179 GITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE----------VPFFSIS 248 (638)
T ss_pred CCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC----------CCeeecc
Confidence 34557899999888887776543221 12366899999999999999999988753 4688888
Q ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC-----------chHHH
Q 010136 192 CTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD-----------RAVLH 260 (517)
Q Consensus 192 ~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~-----------~~~L~ 260 (517)
|..+...+. +. ....++.+|.. +....|+||||||+|.+.... +..|+
T Consensus 249 ~s~f~~~~~-----------------g~-~~~~vr~lF~~---A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~ 307 (638)
T CHL00176 249 GSEFVEMFV-----------------GV-GAARVRDLFKK---AKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLN 307 (638)
T ss_pred HHHHHHHhh-----------------hh-hHHHHHHHHHH---HhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHH
Confidence 876422111 11 13456777763 235678999999999996421 24577
Q ss_pred HHhccCC--CCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHH
Q 010136 261 DLFMLTT--FPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCAR 338 (517)
Q Consensus 261 ~l~~~~~--~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~ 338 (517)
.|+.... .....++||++||. ++.+++++.++......|.|++++.+++.+||+..+... ...++..+..+|+
T Consensus 308 ~LL~~~dg~~~~~~ViVIaaTN~---~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~--~~~~d~~l~~lA~ 382 (638)
T CHL00176 308 QLLTEMDGFKGNKGVIVIAATNR---VDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNK--KLSPDVSLELIAR 382 (638)
T ss_pred HHHhhhccccCCCCeeEEEecCc---hHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhc--ccchhHHHHHHHh
Confidence 7765421 23467999999995 566788888753334699999999999999999888753 2334556777776
Q ss_pred HHHHHhC-CHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHh
Q 010136 339 KVAAASG-DMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNT 409 (517)
Q Consensus 339 ~~~~~~G-d~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~ 409 (517)
. ..| ..+..-++|++|+..|.+.+.. .|+++|+..|+..+
T Consensus 383 ~---t~G~sgaDL~~lvneAal~a~r~~~~----------------------------~It~~dl~~Ai~rv 423 (638)
T CHL00176 383 R---TPGFSGADLANLLNEAAILTARRKKA----------------------------TITMKEIDTAIDRV 423 (638)
T ss_pred c---CCCCCHHHHHHHHHHHHHHHHHhCCC----------------------------CcCHHHHHHHHHHH
Confidence 4 344 4555557888888777665544 79999999999876
No 42
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.79 E-value=8.5e-18 Score=175.37 Aligned_cols=206 Identities=18% Similarity=0.209 Sum_probs=141.7
Q ss_pred cCcCCCC---CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcC------------
Q 010136 117 LHVSTAP---STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAG------------ 181 (517)
Q Consensus 117 l~~~~~p---~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~------------ 181 (517)
|...|.| ++++|.+..+..|...+.. +..+..++|+||||||||++++.+++.+.+.....+
T Consensus 11 la~kyRP~~f~dliGq~~vv~~L~~ai~~---~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~ 87 (507)
T PRK06645 11 FARKYRPSNFAELQGQEVLVKVLSYTILN---DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTN 87 (507)
T ss_pred hhhhhCCCCHHHhcCcHHHHHHHHHHHHc---CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChH
Confidence 3444555 3789999877665554432 233568999999999999999999999875321000
Q ss_pred ------CCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhccc
Q 010136 182 ------LQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITR 254 (517)
Q Consensus 182 ------~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~ 254 (517)
.....++++++....+ .+.++.++... ......+..|+||||+|.|...
T Consensus 88 C~~i~~~~h~Dv~eidaas~~~------------------------vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~ 143 (507)
T PRK06645 88 CISFNNHNHPDIIEIDAASKTS------------------------VDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKG 143 (507)
T ss_pred HHHHhcCCCCcEEEeeccCCCC------------------------HHHHHHHHHHHHhccccCCcEEEEEEChhhcCHH
Confidence 0012344444433222 23333333321 1112345679999999999765
Q ss_pred CchHHHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHH
Q 010136 255 DRAVLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALE 334 (517)
Q Consensus 255 ~~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~ 334 (517)
.++.|...++. +...+++|++++. .+.+.+.++|| | ..+.|.+++.+++..+|..++... ...+++++++
T Consensus 144 a~naLLk~LEe---pp~~~vfI~aTte---~~kI~~tI~SR-c--~~~ef~~ls~~el~~~L~~i~~~e-gi~ie~eAL~ 213 (507)
T PRK06645 144 AFNALLKTLEE---PPPHIIFIFATTE---VQKIPATIISR-C--QRYDLRRLSFEEIFKLLEYITKQE-NLKTDIEALR 213 (507)
T ss_pred HHHHHHHHHhh---cCCCEEEEEEeCC---hHHhhHHHHhc-c--eEEEccCCCHHHHHHHHHHHHHHc-CCCCCHHHHH
Confidence 56666655553 4567777777764 55678889998 7 689999999999999999988743 2468999999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 010136 335 LCARKVAAASGDMRKALSVCRSAIEILE 362 (517)
Q Consensus 335 ~ia~~~~~~~Gd~R~al~ll~~A~~~a~ 362 (517)
++++ .+.||+|.|+++++.++.++.
T Consensus 214 ~Ia~---~s~GslR~al~~Ldkai~~~~ 238 (507)
T PRK06645 214 IIAY---KSEGSARDAVSILDQAASMSA 238 (507)
T ss_pred HHHH---HcCCCHHHHHHHHHHHHHhhc
Confidence 9987 578999999999999886653
No 43
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.79 E-value=4.6e-18 Score=180.86 Aligned_cols=195 Identities=21% Similarity=0.242 Sum_probs=137.2
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCe-EEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCC--------------CceEE
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGS-LYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQ--------------QPEVF 188 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~-lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~--------------~~~~v 188 (517)
++++|.+..++.|...+ ..++..+ ++|+||+|+|||++++.+++.+.+.....+.+ .+.++
T Consensus 16 ~divGQe~vv~~L~~~l----~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~i 91 (647)
T PRK07994 16 AEVVGQEHVLTALANAL----DLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLI 91 (647)
T ss_pred HHhcCcHHHHHHHHHHH----HcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCce
Confidence 57999999776665554 4455555 57999999999999999999988631100000 01233
Q ss_pred EEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhcccCchHHHHHhccCC
Q 010136 189 SINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTT 267 (517)
Q Consensus 189 ~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~ 267 (517)
++++..... .+.++++.... .....++..|+||||+|.|....++.|...++.+
T Consensus 92 eidaas~~~------------------------VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEP- 146 (647)
T PRK07994 92 EIDAASRTK------------------------VEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP- 146 (647)
T ss_pred eecccccCC------------------------HHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcC-
Confidence 333322111 23333333221 1112456679999999999877778887777663
Q ss_pred CCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCH
Q 010136 268 FPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDM 347 (517)
Q Consensus 268 ~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~ 347 (517)
..++.+|+++++ +..+.+.++|| | ..+.|.+++.+++...|..++... ...++++++..|++ .+.|++
T Consensus 147 --p~~v~FIL~Tt~---~~kLl~TI~SR-C--~~~~f~~Ls~~ei~~~L~~il~~e-~i~~e~~aL~~Ia~---~s~Gs~ 214 (647)
T PRK07994 147 --PEHVKFLLATTD---PQKLPVTILSR-C--LQFHLKALDVEQIRQQLEHILQAE-QIPFEPRALQLLAR---AADGSM 214 (647)
T ss_pred --CCCeEEEEecCC---ccccchHHHhh-h--eEeeCCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHH---HcCCCH
Confidence 457778887774 55788899999 7 799999999999999999887532 24688999999987 589999
Q ss_pred HHHHHHHHHHHH
Q 010136 348 RKALSVCRSAIE 359 (517)
Q Consensus 348 R~al~ll~~A~~ 359 (517)
|.|++++..|+.
T Consensus 215 R~Al~lldqaia 226 (647)
T PRK07994 215 RDALSLTDQAIA 226 (647)
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 44
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=7e-18 Score=178.60 Aligned_cols=197 Identities=17% Similarity=0.195 Sum_probs=139.7
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCe-EEEEcCCCCcHHHHHHHHHHHHHHHHHhc----------------CCCCce
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGS-LYVCGCPGTGKSLSMEKVQHYLVDWAKEA----------------GLQQPE 186 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~-lli~G~pGtGKT~l~~~v~~~l~~~~~~~----------------~~~~~~ 186 (517)
++++|++..++.|..++. .+..++ ++|+||+|||||++++.+++.+.+..... +.....
T Consensus 13 ~eivGq~~i~~~L~~~i~----~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~d 88 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALD----AGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSID 88 (584)
T ss_pred HHhcCcHHHHHHHHHHHH----cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCce
Confidence 478999987777666654 455666 68999999999999999999987521100 011234
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccC
Q 010136 187 VFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLT 266 (517)
Q Consensus 187 ~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~ 266 (517)
++++++........+ +.+..... .........|+||||+|.|....++.|...++.
T Consensus 89 vieidaas~~gvd~i---------------------Rel~~~~~--~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEE- 144 (584)
T PRK14952 89 VVELDAASHGGVDDT---------------------RELRDRAF--YAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEE- 144 (584)
T ss_pred EEEeccccccCHHHH---------------------HHHHHHHH--hhhhcCCceEEEEECCCcCCHHHHHHHHHHHhc-
Confidence 555555443332221 11111111 111234567999999999988777888777765
Q ss_pred CCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCC
Q 010136 267 TFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGD 346 (517)
Q Consensus 267 ~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd 346 (517)
+...+++|++++. +..+.+.++|| + .++.|.+++.+++.+.|...+... ...++++++.++++ ...||
T Consensus 145 --pp~~~~fIL~tte---~~kll~TI~SR-c--~~~~F~~l~~~~i~~~L~~i~~~e-gi~i~~~al~~Ia~---~s~Gd 212 (584)
T PRK14952 145 --PPEHLIFIFATTE---PEKVLPTIRSR-T--HHYPFRLLPPRTMRALIARICEQE-GVVVDDAVYPLVIR---AGGGS 212 (584)
T ss_pred --CCCCeEEEEEeCC---hHhhHHHHHHh-c--eEEEeeCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHH---HcCCC
Confidence 3457888887874 46788899999 7 799999999999999999877643 24689999999977 57899
Q ss_pred HHHHHHHHHHHHHH
Q 010136 347 MRKALSVCRSAIEI 360 (517)
Q Consensus 347 ~R~al~ll~~A~~~ 360 (517)
+|.|+++++.++..
T Consensus 213 lR~aln~Ldql~~~ 226 (584)
T PRK14952 213 PRDTLSVLDQLLAG 226 (584)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987643
No 45
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.78 E-value=1e-17 Score=163.01 Aligned_cols=207 Identities=15% Similarity=0.155 Sum_probs=138.5
Q ss_pred CCCCcHHHHHHHHHHHHHh---h----c----cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCC
Q 010136 125 TIVCREDEQKKVLEFCKKN---L----E----EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCT 193 (517)
Q Consensus 125 ~l~gRe~e~~~l~~~L~~~---l----~----~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~ 193 (517)
.++|.++..++|.+.+... . . .+...+++|+||||||||++|+.+++.+.... ..+...+++++|.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~---~~~~~~~v~~~~~ 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMN---VLSKGHLIEVERA 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcC---cccCCceEEecHH
Confidence 4788888877776553221 1 0 12356899999999999999999999885421 1122357777776
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC-----chHHHHHhccCCC
Q 010136 194 SLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD-----RAVLHDLFMLTTF 268 (517)
Q Consensus 194 ~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~-----~~~L~~l~~~~~~ 268 (517)
.+.+.+. +.. ...+...|.. ....||||||||.|.... .+.++.|+.....
T Consensus 84 ~l~~~~~-----------------g~~-~~~~~~~~~~------a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~ 139 (261)
T TIGR02881 84 DLVGEYI-----------------GHT-AQKTREVIKK------ALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMED 139 (261)
T ss_pred Hhhhhhc-----------------cch-HHHHHHHHHh------ccCCEEEEechhhhccCCccchHHHHHHHHHHHHhc
Confidence 5422111 121 3455666652 123599999999997432 2455666655333
Q ss_pred CCCcEEEEEEECCC--CcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHH----
Q 010136 269 PFSRFILIGIANAI--DLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAA---- 342 (517)
Q Consensus 269 ~~~~v~lI~ian~~--~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~---- 342 (517)
....+++|+++... +....++|.+.+| | ...|.|++|+.+++.+|++..+... ...++++++++++..+..
T Consensus 140 ~~~~~~vila~~~~~~~~~~~~~p~L~sR-f-~~~i~f~~~~~~el~~Il~~~~~~~-~~~l~~~a~~~l~~~~~~~~~~ 216 (261)
T TIGR02881 140 NRNEFVLILAGYSDEMDYFLSLNPGLRSR-F-PISIDFPDYTVEELMEIAERMVKER-EYKLTEEAKWKLREHLYKVDQL 216 (261)
T ss_pred cCCCEEEEecCCcchhHHHHhcChHHHhc-c-ceEEEECCCCHHHHHHHHHHHHHHc-CCccCHHHHHHHHHHHHHHHhc
Confidence 34566666654432 2333467899998 6 4589999999999999999887653 346899999988776543
Q ss_pred ---HhCCHHHHHHHHHHHHHHH
Q 010136 343 ---ASGDMRKALSVCRSAIEIL 361 (517)
Q Consensus 343 ---~~Gd~R~al~ll~~A~~~a 361 (517)
..||+|.+.+++..|....
T Consensus 217 ~~~~~gn~R~~~n~~e~a~~~~ 238 (261)
T TIGR02881 217 SSREFSNARYVRNIIEKAIRRQ 238 (261)
T ss_pred cCCCCchHHHHHHHHHHHHHHH
Confidence 2489999999998887544
No 46
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.8e-18 Score=157.95 Aligned_cols=219 Identities=17% Similarity=0.200 Sum_probs=152.2
Q ss_pred CCCCcHHHHHHHHHHHHHh---------hccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCC
Q 010136 125 TIVCREDEQKKVLEFCKKN---------LEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSL 195 (517)
Q Consensus 125 ~l~gRe~e~~~l~~~L~~~---------l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~ 195 (517)
++-|.+-+.+++.+.++-- +.-.++.++++|||||||||++++++++.-. ..|+.|+++.+
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~----------a~firvvgsef 225 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT----------AAFIRVVGSEF 225 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccc----------hheeeeccHHH
Confidence 5666666666666554322 2234678999999999999999999987643 36899998775
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC-----------chHHHHHhc
Q 010136 196 TNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD-----------RAVLHDLFM 264 (517)
Q Consensus 196 ~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~-----------~~~L~~l~~ 264 (517)
..+|. |.. -..++..|. +++.+.|.||||||+|.+.+++ |..|.+|++
T Consensus 226 vqkyl-----------------geg-prmvrdvfr---lakenapsiifideidaiatkrfdaqtgadrevqril~elln 284 (408)
T KOG0727|consen 226 VQKYL-----------------GEG-PRMVRDVFR---LAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLN 284 (408)
T ss_pred HHHHh-----------------ccC-cHHHHHHHH---HHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHH
Confidence 33332 222 355777776 5568889999999999998753 345556655
Q ss_pred cC--CCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhH-HH-HHHHHH
Q 010136 265 LT--TFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQA-LE-LCARKV 340 (517)
Q Consensus 265 ~~--~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~a-i~-~ia~~~ 340 (517)
-. -....++-+|.++|. .+.++|.+.+.+...+.|.|+-++..|..-++.....+. .+++++ ++ ++++ -
T Consensus 285 qmdgfdq~~nvkvimatnr---adtldpallrpgrldrkiefplpdrrqkrlvf~titskm---~ls~~vdle~~v~r-p 357 (408)
T KOG0727|consen 285 QMDGFDQTTNVKVIMATNR---ADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKM---NLSDEVDLEDLVAR-P 357 (408)
T ss_pred hccCcCcccceEEEEecCc---ccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcc---cCCcccCHHHHhcC-c
Confidence 42 234578999999995 567888888765556799999999988887777555443 223322 33 3333 2
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhcc
Q 010136 341 AAASGDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFK 411 (517)
Q Consensus 341 ~~~~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~ 411 (517)
...+|. ..-.+|+.|+..|.++++- .|...|+++|......
T Consensus 358 dkis~a--di~aicqeagm~avr~nry----------------------------vvl~kd~e~ay~~~vk 398 (408)
T KOG0727|consen 358 DKISGA--DINAICQEAGMLAVRENRY----------------------------VVLQKDFEKAYKTVVK 398 (408)
T ss_pred cccchh--hHHHHHHHHhHHHHHhcce----------------------------eeeHHHHHHHHHhhcC
Confidence 233331 2336899999999999887 8999999999877543
No 47
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.78 E-value=6.2e-18 Score=177.63 Aligned_cols=203 Identities=20% Similarity=0.207 Sum_probs=141.5
Q ss_pred cCcCCCC---CCCCCcHHHHHHHHHHHHHhhccCCCCe-EEEEcCCCCcHHHHHHHHHHHHHHHHHhcC-----------
Q 010136 117 LHVSTAP---STIVCREDEQKKVLEFCKKNLEEEKAGS-LYVCGCPGTGKSLSMEKVQHYLVDWAKEAG----------- 181 (517)
Q Consensus 117 l~~~~~p---~~l~gRe~e~~~l~~~L~~~l~~~~~~~-lli~G~pGtGKT~l~~~v~~~l~~~~~~~~----------- 181 (517)
|...|.| ++++|.+..++.|..++.. +..++ ++|+||||||||++++.+++.+.+......
T Consensus 6 l~~kyRP~~f~divGq~~v~~~L~~~~~~----~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~ 81 (509)
T PRK14958 6 LARKWRPRCFQEVIGQAPVVRALSNALDQ----QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCRE 81 (509)
T ss_pred HHHHHCCCCHHHhcCCHHHHHHHHHHHHh----CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHH
Confidence 3344555 4799999987777666543 44454 689999999999999999999875311000
Q ss_pred ---CCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhcccCch
Q 010136 182 ---LQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITRDRA 257 (517)
Q Consensus 182 ---~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~~~ 257 (517)
.....++++++....... .+++++... +....++..|+||||+|.|....++
T Consensus 82 i~~g~~~d~~eidaas~~~v~------------------------~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~n 137 (509)
T PRK14958 82 IDEGRFPDLFEVDAASRTKVE------------------------DTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFN 137 (509)
T ss_pred HhcCCCceEEEEcccccCCHH------------------------HHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHH
Confidence 011235555554332222 233333210 1122345679999999999877777
Q ss_pred HHHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHH
Q 010136 258 VLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCA 337 (517)
Q Consensus 258 ~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia 337 (517)
.|...++.+ ...+.+|+++++ +..+.+.+.|| | ..+.|.+++.+++...+...+... ...+++++++.++
T Consensus 138 aLLk~LEep---p~~~~fIlattd---~~kl~~tI~SR-c--~~~~f~~l~~~~i~~~l~~il~~e-gi~~~~~al~~ia 207 (509)
T PRK14958 138 ALLKTLEEP---PSHVKFILATTD---HHKLPVTVLSR-C--LQFHLAQLPPLQIAAHCQHLLKEE-NVEFENAALDLLA 207 (509)
T ss_pred HHHHHHhcc---CCCeEEEEEECC---hHhchHHHHHH-h--hhhhcCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHH
Confidence 777776653 356777877874 56677789999 6 689999999999999999888643 2468899999998
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHH
Q 010136 338 RKVAAASGDMRKALSVCRSAIEI 360 (517)
Q Consensus 338 ~~~~~~~Gd~R~al~ll~~A~~~ 360 (517)
+ .+.||+|.|++++..++..
T Consensus 208 ~---~s~GslR~al~lLdq~ia~ 227 (509)
T PRK14958 208 R---AANGSVRDALSLLDQSIAY 227 (509)
T ss_pred H---HcCCcHHHHHHHHHHHHhc
Confidence 7 4689999999999887643
No 48
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.78 E-value=5.1e-18 Score=187.89 Aligned_cols=240 Identities=18% Similarity=0.209 Sum_probs=157.8
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhc---------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCC
Q 010136 123 PSTIVCREDEQKKVLEFCKKNLE---------EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCT 193 (517)
Q Consensus 123 p~~l~gRe~e~~~l~~~L~~~l~---------~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~ 193 (517)
.+++.|.+...+.|.+.+.-.+. ...+.+++|+||||||||+++++++.++. ..++.+++.
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~----------~~fi~v~~~ 521 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG----------ANFIAVRGP 521 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC----------CCEEEEehH
Confidence 34577777777777666542221 13466899999999999999999998864 468888886
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC---------chHHHHHhc
Q 010136 194 SLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD---------RAVLHDLFM 264 (517)
Q Consensus 194 ~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~---------~~~L~~l~~ 264 (517)
.+.+.+. |.+ ...++.+|.. +....++||||||||.|.... +.++..|+.
T Consensus 522 ~l~~~~v-----------------Ges-e~~i~~~f~~---A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~ 580 (733)
T TIGR01243 522 EILSKWV-----------------GES-EKAIREIFRK---ARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLT 580 (733)
T ss_pred HHhhccc-----------------CcH-HHHHHHHHHH---HHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHH
Confidence 5433221 333 6678888873 345678999999999997542 123444444
Q ss_pred cCC--CCCCcEEEEEEECCCCcchhhcccccc--cCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHH
Q 010136 265 LTT--FPFSRFILIGIANAIDLADRFLPRLQS--MNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKV 340 (517)
Q Consensus 265 ~~~--~~~~~v~lI~ian~~~~~~~l~~~l~s--r~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~ 340 (517)
... ....+++|||+||. ++.+++.+.+ | | ...|+|++++.++..+|++....+.. .-++..++.+|+.+
T Consensus 581 ~ldg~~~~~~v~vI~aTn~---~~~ld~allRpgR-f-d~~i~v~~Pd~~~R~~i~~~~~~~~~--~~~~~~l~~la~~t 653 (733)
T TIGR01243 581 EMDGIQELSNVVVIAATNR---PDILDPALLRPGR-F-DRLILVPPPDEEARKEIFKIHTRSMP--LAEDVDLEELAEMT 653 (733)
T ss_pred HhhcccCCCCEEEEEeCCC---hhhCCHhhcCCCc-c-ceEEEeCCcCHHHHHHHHHHHhcCCC--CCccCCHHHHHHHc
Confidence 321 24568999999994 6778888886 5 5 46899999999999999987766542 11233477888866
Q ss_pred HHHhC-CHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccCh
Q 010136 341 AAASG-DMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSP 413 (517)
Q Consensus 341 ~~~~G-d~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~ 413 (517)
.+++| |+. .+|+.|...|.++................. .....|+++||..|+.++..+.
T Consensus 654 ~g~sgadi~---~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~----------~~~~~i~~~~f~~al~~~~ps~ 714 (733)
T TIGR01243 654 EGYTGADIE---AVCREAAMAALRESIGSPAKEKLEVGEEEF----------LKDLKVEMRHFLEALKKVKPSV 714 (733)
T ss_pred CCCCHHHHH---HHHHHHHHHHHHHHhhhccchhhhcccccc----------cccCcccHHHHHHHHHHcCCCC
Confidence 65555 443 578999888877654311100000000000 0012689999999998877664
No 49
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.78 E-value=2.6e-18 Score=181.93 Aligned_cols=222 Identities=16% Similarity=0.149 Sum_probs=148.4
Q ss_pred CCCCCCcHHHHHHHHHHHHHhh--------ccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCC
Q 010136 123 PSTIVCREDEQKKVLEFCKKNL--------EEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTS 194 (517)
Q Consensus 123 p~~l~gRe~e~~~l~~~L~~~l--------~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~ 194 (517)
.++++|.++..+++.+.+.... ....+.+++|+||||||||+++++++.++. ..++++++..
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~----------~~~~~i~~~~ 123 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG----------VPFFSISGSD 123 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC----------CCeeeccHHH
Confidence 3467787777776666554211 123466899999999999999999987753 4678887765
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCc-----------hHHHHHh
Q 010136 195 LTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDR-----------AVLHDLF 263 (517)
Q Consensus 195 ~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~-----------~~L~~l~ 263 (517)
+.+.+. +. ....+..+|... ....|+||||||+|.+....+ ..+..++
T Consensus 124 ~~~~~~-----------------g~-~~~~l~~~f~~a---~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL 182 (495)
T TIGR01241 124 FVEMFV-----------------GV-GASRVRDLFEQA---KKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLL 182 (495)
T ss_pred HHHHHh-----------------cc-cHHHHHHHHHHH---HhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHH
Confidence 321111 11 145677777632 345678999999999975422 2344444
Q ss_pred ccC--CCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHH
Q 010136 264 MLT--TFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVA 341 (517)
Q Consensus 264 ~~~--~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~ 341 (517)
... ......++||++|| .++.+++.+.++......|.|+.++.++..+|++..+..... -.+..++.+|+.+.
T Consensus 183 ~~~d~~~~~~~v~vI~aTn---~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~--~~~~~l~~la~~t~ 257 (495)
T TIGR01241 183 VEMDGFGTNTGVIVIAATN---RPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL--APDVDLKAVARRTP 257 (495)
T ss_pred hhhccccCCCCeEEEEecC---ChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC--CcchhHHHHHHhCC
Confidence 332 12345799999999 467788988874223468999999999999999988875421 13344667776544
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhc
Q 010136 342 AASGDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTF 410 (517)
Q Consensus 342 ~~~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~ 410 (517)
..+ ....-.+|++|...|.+++.. .|+.+|+..|+....
T Consensus 258 G~s--gadl~~l~~eA~~~a~~~~~~----------------------------~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 258 GFS--GADLANLLNEAALLAARKNKT----------------------------EITMNDIEEAIDRVI 296 (495)
T ss_pred CCC--HHHHHHHHHHHHHHHHHcCCC----------------------------CCCHHHHHHHHHHHh
Confidence 333 234446788887776655443 699999999998764
No 50
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.5e-18 Score=159.51 Aligned_cols=224 Identities=18% Similarity=0.205 Sum_probs=163.9
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHhhc---------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEE
Q 010136 120 STAPSTIVCREDEQKKVLEFCKKNLE---------EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSI 190 (517)
Q Consensus 120 ~~~p~~l~gRe~e~~~l~~~L~~~l~---------~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~v 190 (517)
+....++-|..++++.|.+.++.-+. -..+.++++|||||||||.+++++++.-. ..|+.|
T Consensus 173 dvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd----------acfirv 242 (435)
T KOG0729|consen 173 DVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD----------ACFIRV 242 (435)
T ss_pred CcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC----------ceEEee
Confidence 33445788899999999888754322 23577999999999999999999987633 367777
Q ss_pred eCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC-----------chHH
Q 010136 191 NCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD-----------RAVL 259 (517)
Q Consensus 191 n~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~-----------~~~L 259 (517)
-++.+...|. |.. ...++++|. +++.++.+|||+||||.+...+ |..+
T Consensus 243 igselvqkyv-----------------geg-armvrelf~---martkkaciiffdeidaiggarfddg~ggdnevqrtm 301 (435)
T KOG0729|consen 243 IGSELVQKYV-----------------GEG-ARMVRELFE---MARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTM 301 (435)
T ss_pred hhHHHHHHHh-----------------hhh-HHHHHHHHH---HhcccceEEEEeeccccccCccccCCCCCcHHHHHHH
Confidence 7765433332 222 567888887 6678889999999999987532 2233
Q ss_pred HHHhcc--CCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChh-HHHHH
Q 010136 260 HDLFML--TTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQ-ALELC 336 (517)
Q Consensus 260 ~~l~~~--~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~-ai~~i 336 (517)
.+|+.. .-.+..++-|+.++|. ++.++|.+.+.....+.+.|.-++-+....|++-..... .++.+ -.+++
T Consensus 302 leli~qldgfdprgnikvlmatnr---pdtldpallrpgrldrkvef~lpdlegrt~i~kihaksm---sverdir~ell 375 (435)
T KOG0729|consen 302 LELINQLDGFDPRGNIKVLMATNR---PDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSM---SVERDIRFELL 375 (435)
T ss_pred HHHHHhccCCCCCCCeEEEeecCC---CCCcCHhhcCCcccccceeccCCcccccceeEEEecccc---ccccchhHHHH
Confidence 333332 2246678999999994 777888888865556799999999998888887665543 22333 36788
Q ss_pred HHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhcc
Q 010136 337 ARKVAAASG-DMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFK 411 (517)
Q Consensus 337 a~~~~~~~G-d~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~ 411 (517)
|+.+-.++| ++| .+|.+|.+.|.+..+. ..|..||.+|++++..
T Consensus 376 arlcpnstgaeir---svcteagmfairarrk----------------------------~atekdfl~av~kvvk 420 (435)
T KOG0729|consen 376 ARLCPNSTGAEIR---SVCTEAGMFAIRARRK----------------------------VATEKDFLDAVNKVVK 420 (435)
T ss_pred HhhCCCCcchHHH---HHHHHhhHHHHHHHhh----------------------------hhhHHHHHHHHHHHHH
Confidence 887766666 566 6999999999998887 7899999999988754
No 51
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.77 E-value=1.6e-17 Score=175.88 Aligned_cols=203 Identities=22% Similarity=0.277 Sum_probs=139.2
Q ss_pred cCcCCCC---CCCCCcHHHHHHHHHHHHHhhccCC-CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCC----------
Q 010136 117 LHVSTAP---STIVCREDEQKKVLEFCKKNLEEEK-AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGL---------- 182 (517)
Q Consensus 117 l~~~~~p---~~l~gRe~e~~~l~~~L~~~l~~~~-~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~---------- 182 (517)
|...|.| ++++|++..++.|..++.. ++ +..++|+||+|+|||++++.+++.+.+.....+.
T Consensus 6 LarKYRP~tFddIIGQe~vv~~L~~ai~~----~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~ 81 (709)
T PRK08691 6 LARKWRPKTFADLVGQEHVVKALQNALDE----GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQ 81 (709)
T ss_pred HHHHhCCCCHHHHcCcHHHHHHHHHHHHc----CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHH
Confidence 4445555 4799999988777777553 34 4568999999999999999999988642110000
Q ss_pred ----CCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhcccCch
Q 010136 183 ----QQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITRDRA 257 (517)
Q Consensus 183 ----~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~~~ 257 (517)
..+.++++++..... .+.+++++... ......+..||||||+|.|....++
T Consensus 82 i~~g~~~DvlEidaAs~~g------------------------Vd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~N 137 (709)
T PRK08691 82 IDAGRYVDLLEIDAASNTG------------------------IDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFN 137 (709)
T ss_pred HhccCccceEEEeccccCC------------------------HHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHH
Confidence 001233444322211 23344443311 1111235579999999999765556
Q ss_pred HHHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHH
Q 010136 258 VLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCA 337 (517)
Q Consensus 258 ~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia 337 (517)
.|...++. +...+.+|+++++ +..+.+.++|| | ..+.|.+++.+++..+|..++... ...+++++++.|+
T Consensus 138 ALLKtLEE---Pp~~v~fILaTtd---~~kL~~TIrSR-C--~~f~f~~Ls~eeI~~~L~~Il~kE-gi~id~eAL~~Ia 207 (709)
T PRK08691 138 AMLKTLEE---PPEHVKFILATTD---PHKVPVTVLSR-C--LQFVLRNMTAQQVADHLAHVLDSE-KIAYEPPALQLLG 207 (709)
T ss_pred HHHHHHHh---CCCCcEEEEEeCC---ccccchHHHHH-H--hhhhcCCCCHHHHHHHHHHHHHHc-CCCcCHHHHHHHH
Confidence 66666654 3356677777874 55677888898 7 689999999999999999888743 2478999999998
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHH
Q 010136 338 RKVAAASGDMRKALSVCRSAIEI 360 (517)
Q Consensus 338 ~~~~~~~Gd~R~al~ll~~A~~~ 360 (517)
+ ...||+|.++++|..++..
T Consensus 208 ~---~A~GslRdAlnLLDqaia~ 227 (709)
T PRK08691 208 R---AAAGSMRDALSLLDQAIAL 227 (709)
T ss_pred H---HhCCCHHHHHHHHHHHHHh
Confidence 8 4689999999999888754
No 52
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.77 E-value=7.8e-18 Score=185.82 Aligned_cols=240 Identities=16% Similarity=0.209 Sum_probs=164.2
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFS 203 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~ 203 (517)
+.++||+++++++...|.. ....+++|+||||||||++++.+++.+........+....++++++..+......
T Consensus 182 ~~~igr~~ei~~~~~~L~~----~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~-- 255 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCR----RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKY-- 255 (731)
T ss_pred CcccCcHHHHHHHHHHHhc----CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccc--
Confidence 4689999999987776544 4567999999999999999999999875421111111346777775443211100
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC-----chHHHHHhccCCCCCCcEEEEEE
Q 010136 204 KILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD-----RAVLHDLFMLTTFPFSRFILIGI 278 (517)
Q Consensus 204 ~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~-----~~~L~~l~~~~~~~~~~v~lI~i 278 (517)
.....+.+.++|... ....+.||||||+|.|.... .....+++. +......+.+||+
T Consensus 256 --------------~g~~e~~l~~i~~~~---~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~-~~l~~g~i~~Iga 317 (731)
T TIGR02639 256 --------------RGDFEERLKAVVSEI---EKEPNAILFIDEIHTIVGAGATSGGSMDASNLLK-PALSSGKLRCIGS 317 (731)
T ss_pred --------------cchHHHHHHHHHHHH---hccCCeEEEEecHHHHhccCCCCCccHHHHHHHH-HHHhCCCeEEEEe
Confidence 112256677777632 12357899999999997532 112333332 2234578999999
Q ss_pred ECCCCcch--hhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhh---hccCCCChhHHHHHHHHHHHHhCC---HHHH
Q 010136 279 ANAIDLAD--RFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLME---LSYIVFQPQALELCARKVAAASGD---MRKA 350 (517)
Q Consensus 279 an~~~~~~--~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~---~~~~~~~~~ai~~ia~~~~~~~Gd---~R~a 350 (517)
||..++.. ..++.+.+| | +.|.|.+++.+++.+||+..... .....+++++++.++.....+-+| +++|
T Consensus 318 Tt~~e~~~~~~~d~al~rR-f--~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~ka 394 (731)
T TIGR02639 318 TTYEEYKNHFEKDRALSRR-F--QKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKA 394 (731)
T ss_pred cCHHHHHHHhhhhHHHHHh-C--ceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHH
Confidence 98644322 347888888 7 58999999999999999965543 334578999999999988888877 8999
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccChh
Q 010136 351 LSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSPV 414 (517)
Q Consensus 351 l~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~~ 414 (517)
+++++.|+..+...... . ....|+.+||..++..+..-|.
T Consensus 395 i~lld~a~a~~~~~~~~-~-----------------------~~~~v~~~~i~~~i~~~tgiP~ 434 (731)
T TIGR02639 395 IDVIDEAGASFRLRPKA-K-----------------------KKANVSVKDIENVVAKMAHIPV 434 (731)
T ss_pred HHHHHHhhhhhhcCccc-c-----------------------cccccCHHHHHHHHHHHhCCCh
Confidence 99999988644321110 0 0016999999999998876653
No 53
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=4.9e-18 Score=155.78 Aligned_cols=222 Identities=18% Similarity=0.181 Sum_probs=155.5
Q ss_pred CCCCCcHHHHHHHHHHHHHhh---------ccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCC
Q 010136 124 STIVCREDEQKKVLEFCKKNL---------EEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTS 194 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l---------~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~ 194 (517)
.++-|.++++++|.+.+--.+ .-..+.++++|||||||||.++++++.+-.. .|+.+.++.
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~a----------TFLKLAgPQ 240 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNA----------TFLKLAGPQ 240 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccc----------hHHHhcchH
Confidence 468899999999988863221 1234779999999999999999998876432 344444433
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC-----------chHHHHHh
Q 010136 195 LTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD-----------RAVLHDLF 263 (517)
Q Consensus 195 ~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~-----------~~~L~~l~ 263 (517)
+. +-+- |. ..+.++..|. ++..+.|.||||||+|.+..++ |..+..|+
T Consensus 241 LV----------QMfI-------Gd-GAkLVRDAFa---LAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELL 299 (424)
T KOG0652|consen 241 LV----------QMFI-------GD-GAKLVRDAFA---LAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELL 299 (424)
T ss_pred HH----------hhhh-------cc-hHHHHHHHHH---HhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHH
Confidence 21 1110 11 1566777786 5678889999999999998753 23344444
Q ss_pred cc--CCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHH
Q 010136 264 ML--TTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVA 341 (517)
Q Consensus 264 ~~--~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~ 341 (517)
+- .-.+...+-+|+++|..|. ++|.+.+.....+.|.|+-++.+....|++-.-.+. .+-++--.+.+|+.+.
T Consensus 300 NQLDGFss~~~vKviAATNRvDi---LDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKM--nv~~DvNfeELaRsTd 374 (424)
T KOG0652|consen 300 NQLDGFSSDDRVKVIAATNRVDI---LDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKM--NVSDDVNFEELARSTD 374 (424)
T ss_pred HhhcCCCCccceEEEeecccccc---cCHHHhhcccccccccCCCCChHHHHHHHHHhhhhc--CCCCCCCHHHHhhccc
Confidence 33 1235678999999997654 567777654456799999999999999998776654 2333444788888554
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhcc
Q 010136 342 AASGDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFK 411 (517)
Q Consensus 342 ~~~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~ 411 (517)
...|---+ .+|-+|+++|.+.+.. .|+-+||.+++.++..
T Consensus 375 dFNGAQcK--AVcVEAGMiALRr~at----------------------------ev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 375 DFNGAQCK--AVCVEAGMIALRRGAT----------------------------EVTHEDFMEGILEVQA 414 (424)
T ss_pred ccCchhhe--eeehhhhHHHHhcccc----------------------------cccHHHHHHHHHHHHH
Confidence 44554333 4788999999988766 7999999999887764
No 54
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.77 E-value=8.6e-17 Score=166.54 Aligned_cols=190 Identities=19% Similarity=0.239 Sum_probs=133.9
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFS 203 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~ 203 (517)
++++|++..+.. ...|...+......+++|+||||||||++++.+++.+. ..++.+++.... ...+ .
T Consensus 12 ~d~vGq~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~----------~~~~~l~a~~~~-~~~i-r 78 (413)
T PRK13342 12 DEVVGQEHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD----------APFEALSAVTSG-VKDL-R 78 (413)
T ss_pred HHhcCcHHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC----------CCEEEEeccccc-HHHH-H
Confidence 468999887655 22233344556677999999999999999999988753 367888876431 1111 1
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCCC
Q 010136 204 KILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAID 283 (517)
Q Consensus 204 ~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~ 283 (517)
.+ +..... ....++..||||||+|.+....++.|...++. ..+++|++++ .+
T Consensus 79 ~i-------------------i~~~~~---~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~-----~~iilI~att-~n 130 (413)
T PRK13342 79 EV-------------------IEEARQ---RRSAGRRTILFIDEIHRFNKAQQDALLPHVED-----GTITLIGATT-EN 130 (413)
T ss_pred HH-------------------HHHHHH---hhhcCCceEEEEechhhhCHHHHHHHHHHhhc-----CcEEEEEeCC-CC
Confidence 11 111111 00123567999999999987777777766642 4677887554 23
Q ss_pred cchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhcc-C-CCChhHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 010136 284 LADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSY-I-VFQPQALELCARKVAAASGDMRKALSVCRSAIEI 360 (517)
Q Consensus 284 ~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~-~-~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~~ 360 (517)
....+.+.+.|| | ..+.|.+++.+++..++...+..... . .+++++++.+++ ...||+|.+++++..++..
T Consensus 131 ~~~~l~~aL~SR-~--~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~---~s~Gd~R~aln~Le~~~~~ 203 (413)
T PRK13342 131 PSFEVNPALLSR-A--QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALAR---LANGDARRALNLLELAALG 203 (413)
T ss_pred hhhhccHHHhcc-c--eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHH---hCCCCHHHHHHHHHHHHHc
Confidence 344678899999 7 68999999999999999987754321 2 588999999877 3589999999999988753
No 55
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=6.8e-18 Score=179.35 Aligned_cols=224 Identities=20% Similarity=0.194 Sum_probs=162.5
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhc---------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCC
Q 010136 123 PSTIVCREDEQKKVLEFCKKNLE---------EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCT 193 (517)
Q Consensus 123 p~~l~gRe~e~~~l~~~L~~~l~---------~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~ 193 (517)
...+.|.+...+.+.+.+...+. -..+.+++|+||||||||+++++++.++. ..|+.+.+.
T Consensus 241 ~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~----------~~fi~v~~~ 310 (494)
T COG0464 241 LDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESR----------SRFISVKGS 310 (494)
T ss_pred eehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCC----------CeEEEeeCH
Confidence 34555555555555555433221 13456899999999999999999998654 478999988
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCc--------hHHHHHhcc
Q 010136 194 SLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDR--------AVLHDLFML 265 (517)
Q Consensus 194 ~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~--------~~L~~l~~~ 265 (517)
.+.+.+. |.+ .+.++++|.. +....|+||||||+|.+..... .++.+++.+
T Consensus 311 ~l~sk~v-----------------Ges-ek~ir~~F~~---A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~ 369 (494)
T COG0464 311 ELLSKWV-----------------GES-EKNIRELFEK---ARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTE 369 (494)
T ss_pred HHhcccc-----------------chH-HHHHHHHHHH---HHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHH
Confidence 6655443 333 7889999983 3467899999999999987642 456666555
Q ss_pred C--CCCCCcEEEEEEECCCCcchhhcccccc--cCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHH
Q 010136 266 T--TFPFSRFILIGIANAIDLADRFLPRLQS--MNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVA 341 (517)
Q Consensus 266 ~--~~~~~~v~lI~ian~~~~~~~l~~~l~s--r~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~ 341 (517)
. ......|.||++|| .++.+++.+.+ | | ...|.|++++.++..+|+...+.........+-.++.+++...
T Consensus 370 ~d~~e~~~~v~vi~aTN---~p~~ld~a~lR~gR-f-d~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~ 444 (494)
T COG0464 370 LDGIEKAEGVLVIAATN---RPDDLDPALLRPGR-F-DRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITE 444 (494)
T ss_pred hcCCCccCceEEEecCC---CccccCHhhcccCc-c-ceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhc
Confidence 3 23456789999999 57778888888 6 5 4699999999999999999998744222234555777777554
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHHHH-hhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccC
Q 010136 342 AASGDMRKALSVCRSAIEILEAEMR-ESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKS 412 (517)
Q Consensus 342 ~~~Gd~R~al~ll~~A~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~ 412 (517)
.++| ..+..+|+.|...+..+.. . .|+++|+..|+..+..+
T Consensus 445 ~~sg--adi~~i~~ea~~~~~~~~~~~----------------------------~~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 445 GYSG--ADIAALVREAALEALREARRR----------------------------EVTLDDFLDALKKIKPS 486 (494)
T ss_pred CCCH--HHHHHHHHHHHHHHHHHhccC----------------------------CccHHHHHHHHHhcCCC
Confidence 4444 2445789999988887763 2 69999999999996655
No 56
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.77 E-value=4.2e-17 Score=179.01 Aligned_cols=200 Identities=17% Similarity=0.191 Sum_probs=140.0
Q ss_pred cCCCC---CCCCCcHHHHHHHHHHHHHhhccCCCCe-EEEEcCCCCcHHHHHHHHHHHHHHHHHh---------------
Q 010136 119 VSTAP---STIVCREDEQKKVLEFCKKNLEEEKAGS-LYVCGCPGTGKSLSMEKVQHYLVDWAKE--------------- 179 (517)
Q Consensus 119 ~~~~p---~~l~gRe~e~~~l~~~L~~~l~~~~~~~-lli~G~pGtGKT~l~~~v~~~l~~~~~~--------------- 179 (517)
..|.| ++++|++..++.|..++. .++..+ +||+||+|||||++++.+++.|.+....
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i~----~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~ 82 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALD----SGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALA 82 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHH----hCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHH
Confidence 34555 478999997777666654 345555 7899999999999999999999753110
Q ss_pred -cCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhcccCch
Q 010136 180 -AGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITRDRA 257 (517)
Q Consensus 180 -~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~~~ 257 (517)
.+...+.++++++....... .++++.... +.....+..|+||||+|.|....++
T Consensus 83 ~g~~~~~dv~eidaas~~~Vd------------------------~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~N 138 (824)
T PRK07764 83 PGGPGSLDVTEIDAASHGGVD------------------------DARELRERAFFAPAESRYKIFIIDEAHMVTPQGFN 138 (824)
T ss_pred cCCCCCCcEEEecccccCCHH------------------------HHHHHHHHHHhchhcCCceEEEEechhhcCHHHHH
Confidence 00112334455443332222 222221110 1112345679999999999887778
Q ss_pred HHHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHH
Q 010136 258 VLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCA 337 (517)
Q Consensus 258 ~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia 337 (517)
.|..+++.+ ...++||++++. .+.+.+.++|| | +.+.|.+++.+++.++|...+... ...++++++.+++
T Consensus 139 aLLK~LEEp---P~~~~fIl~tt~---~~kLl~TIrSR-c--~~v~F~~l~~~~l~~~L~~il~~E-Gv~id~eal~lLa 208 (824)
T PRK07764 139 ALLKIVEEP---PEHLKFIFATTE---PDKVIGTIRSR-T--HHYPFRLVPPEVMRGYLERICAQE-GVPVEPGVLPLVI 208 (824)
T ss_pred HHHHHHhCC---CCCeEEEEEeCC---hhhhhHHHHhh-e--eEEEeeCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHH
Confidence 888877663 457788887874 45688889999 7 799999999999999999877532 2367899999887
Q ss_pred HHHHHHhCCHHHHHHHHHHHHH
Q 010136 338 RKVAAASGDMRKALSVCRSAIE 359 (517)
Q Consensus 338 ~~~~~~~Gd~R~al~ll~~A~~ 359 (517)
+ ...||+|.++++|...+.
T Consensus 209 ~---~sgGdlR~Al~eLEKLia 227 (824)
T PRK07764 209 R---AGGGSVRDSLSVLDQLLA 227 (824)
T ss_pred H---HcCCCHHHHHHHHHHHHh
Confidence 7 578999999999988663
No 57
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=3.6e-17 Score=173.81 Aligned_cols=203 Identities=21% Similarity=0.274 Sum_probs=137.8
Q ss_pred cCcCCCC---CCCCCcHHHHHHHHHHHHHhhccCCCCe-EEEEcCCCCcHHHHHHHHHHHHHHHHHh--cCC--------
Q 010136 117 LHVSTAP---STIVCREDEQKKVLEFCKKNLEEEKAGS-LYVCGCPGTGKSLSMEKVQHYLVDWAKE--AGL-------- 182 (517)
Q Consensus 117 l~~~~~p---~~l~gRe~e~~~l~~~L~~~l~~~~~~~-lli~G~pGtGKT~l~~~v~~~l~~~~~~--~~~-------- 182 (517)
|...|.| ++++|.+..++.|..++. .++..+ +||+||+|||||++++.+++.+.+.... .+.
T Consensus 6 la~KyRP~~f~dviGQe~vv~~L~~~l~----~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C 81 (618)
T PRK14951 6 LARKYRPRSFSEMVGQEHVVQALTNALT----QQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVC 81 (618)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHH----cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCcc
Confidence 3344444 478998886665555544 445554 5899999999999999999998752110 000
Q ss_pred ---------CCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHh-hhccCCCceEEEEEeCcchhc
Q 010136 183 ---------QQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQ-KLHSSVMKMMLIIADELDYLI 252 (517)
Q Consensus 183 ---------~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~vI~iDEiD~L~ 252 (517)
....++++++..... .+.+++++.. ......++..|+||||+|.|.
T Consensus 82 ~~C~~i~~g~h~D~~eldaas~~~------------------------Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls 137 (618)
T PRK14951 82 QACRDIDSGRFVDYTELDAASNRG------------------------VDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT 137 (618)
T ss_pred HHHHHHHcCCCCceeecCcccccC------------------------HHHHHHHHHHHHhCcccCCceEEEEEChhhCC
Confidence 001233333322111 2334444332 112223456799999999998
Q ss_pred ccCchHHHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhH
Q 010136 253 TRDRAVLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQA 332 (517)
Q Consensus 253 ~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~a 332 (517)
...++.|...++. +...+.+|+++++ +..+.+.+.|| | ..+.|.+++.+++.+.|...+... ...+++++
T Consensus 138 ~~a~NaLLKtLEE---PP~~~~fIL~Ttd---~~kil~TIlSR-c--~~~~f~~Ls~eei~~~L~~i~~~e-gi~ie~~A 207 (618)
T PRK14951 138 NTAFNAMLKTLEE---PPEYLKFVLATTD---PQKVPVTVLSR-C--LQFNLRPMAPETVLEHLTQVLAAE-NVPAEPQA 207 (618)
T ss_pred HHHHHHHHHhccc---CCCCeEEEEEECC---chhhhHHHHHh-c--eeeecCCCCHHHHHHHHHHHHHHc-CCCCCHHH
Confidence 7666666665554 4467778887874 55677789998 7 799999999999999999887642 24788999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 010136 333 LELCARKVAAASGDMRKALSVCRSAIEI 360 (517)
Q Consensus 333 i~~ia~~~~~~~Gd~R~al~ll~~A~~~ 360 (517)
++++++ ...||+|.+++++..++..
T Consensus 208 L~~La~---~s~GslR~al~lLdq~ia~ 232 (618)
T PRK14951 208 LRLLAR---AARGSMRDALSLTDQAIAF 232 (618)
T ss_pred HHHHHH---HcCCCHHHHHHHHHHHHHh
Confidence 999987 5789999999999877644
No 58
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.77 E-value=1.1e-16 Score=160.85 Aligned_cols=201 Identities=21% Similarity=0.262 Sum_probs=139.3
Q ss_pred hcCcCCCC---CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeC
Q 010136 116 ALHVSTAP---STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINC 192 (517)
Q Consensus 116 ~l~~~~~p---~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~ 192 (517)
.|.+.|.| ++++|++..++.+..++. .+..++++|+||||||||++++.+++++... ++ ...++++++
T Consensus 6 ~w~~kyrP~~~~~~~g~~~~~~~l~~~i~----~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~----~~-~~~~i~~~~ 76 (319)
T PRK00440 6 IWVEKYRPRTLDEIVGQEEIVERLKSYVK----EKNMPHLLFAGPPGTGKTTAALALARELYGE----DW-RENFLELNA 76 (319)
T ss_pred ccchhhCCCcHHHhcCcHHHHHHHHHHHh----CCCCCeEEEECCCCCCHHHHHHHHHHHHcCC----cc-ccceEEecc
Confidence 45667788 478999998887777764 3455679999999999999999999887531 11 134677776
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCc
Q 010136 193 TSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSR 272 (517)
Q Consensus 193 ~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~ 272 (517)
........+.. . +..+... .........+|+|||+|.+....+..|..+++... ..
T Consensus 77 ~~~~~~~~~~~-~-------------------i~~~~~~-~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~---~~ 132 (319)
T PRK00440 77 SDERGIDVIRN-K-------------------IKEFART-APVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYS---QN 132 (319)
T ss_pred ccccchHHHHH-H-------------------HHHHHhc-CCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCC---CC
Confidence 55433222111 1 1111110 00011335799999999997766677777776532 23
Q ss_pred EEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHH
Q 010136 273 FILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALS 352 (517)
Q Consensus 273 v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ 352 (517)
..+|.++|. ...+.+.+++| + ..+.|.|++.+++..++..++... ...+++++++++++ ...||+|.|++
T Consensus 133 ~~lIl~~~~---~~~l~~~l~sr-~--~~~~~~~l~~~ei~~~l~~~~~~~-~~~i~~~al~~l~~---~~~gd~r~~~~ 202 (319)
T PRK00440 133 TRFILSCNY---SSKIIDPIQSR-C--AVFRFSPLKKEAVAERLRYIAENE-GIEITDDALEAIYY---VSEGDMRKAIN 202 (319)
T ss_pred CeEEEEeCC---ccccchhHHHH-h--heeeeCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHH---HcCCCHHHHHH
Confidence 455556663 45566778888 5 579999999999999999888643 23689999999987 47899999999
Q ss_pred HHHHHHH
Q 010136 353 VCRSAIE 359 (517)
Q Consensus 353 ll~~A~~ 359 (517)
.++.+..
T Consensus 203 ~l~~~~~ 209 (319)
T PRK00440 203 ALQAAAA 209 (319)
T ss_pred HHHHHHH
Confidence 9987664
No 59
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.76 E-value=1e-17 Score=151.37 Aligned_cols=199 Identities=24% Similarity=0.350 Sum_probs=146.9
Q ss_pred cCcCCCCC---CCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCC
Q 010136 117 LHVSTAPS---TIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCT 193 (517)
Q Consensus 117 l~~~~~p~---~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~ 193 (517)
|.+.|.|. +++|-|+.++.+.-+. ..+..++++|+|||||||||.+..++++|-...... -+.++|++
T Consensus 17 wVeKYrP~~l~dIVGNe~tv~rl~via----~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke-----~vLELNAS 87 (333)
T KOG0991|consen 17 WVEKYRPSVLQDIVGNEDTVERLSVIA----KEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKE-----AVLELNAS 87 (333)
T ss_pred HHHhhCchHHHHhhCCHHHHHHHHHHH----HcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhh-----HhhhccCc
Confidence 44566664 7999999888777664 457789999999999999999999999986422211 36788888
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHh-hhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCc
Q 010136 194 SLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQ-KLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSR 272 (517)
Q Consensus 194 ~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~ 272 (517)
.......+- .--+.|.+ .+.-..++..||+|||+|.+....|.+|+..++... ...+
T Consensus 88 deRGIDvVR---------------------n~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS-~ttR 145 (333)
T KOG0991|consen 88 DERGIDVVR---------------------NKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYS-NTTR 145 (333)
T ss_pred cccccHHHH---------------------HHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHc-ccch
Confidence 865544431 11223332 222245678899999999999999999999888743 2345
Q ss_pred EEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHH
Q 010136 273 FILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALS 352 (517)
Q Consensus 273 v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ 352 (517)
+.+. .|. .+.+...++|| | ..+.|..++..++..-|....+. +...++++.++.+.. ...||+|.|++
T Consensus 146 Fala--CN~---s~KIiEPIQSR-C--AiLRysklsd~qiL~Rl~~v~k~-Ekv~yt~dgLeaiif---ta~GDMRQalN 213 (333)
T KOG0991|consen 146 FALA--CNQ---SEKIIEPIQSR-C--AILRYSKLSDQQILKRLLEVAKA-EKVNYTDDGLEAIIF---TAQGDMRQALN 213 (333)
T ss_pred hhhh--hcc---hhhhhhhHHhh-h--HhhhhcccCHHHHHHHHHHHHHH-hCCCCCcchHHHhhh---hccchHHHHHH
Confidence 5555 573 56788899999 7 58999999999988777755543 335778888888754 68999999999
Q ss_pred HHHHHH
Q 010136 353 VCRSAI 358 (517)
Q Consensus 353 ll~~A~ 358 (517)
.++..+
T Consensus 214 nLQst~ 219 (333)
T KOG0991|consen 214 NLQSTV 219 (333)
T ss_pred HHHHHh
Confidence 998866
No 60
>PRK04195 replication factor C large subunit; Provisional
Probab=99.76 E-value=3.4e-17 Score=172.83 Aligned_cols=194 Identities=21% Similarity=0.278 Sum_probs=138.7
Q ss_pred cCcCCCCC---CCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCC
Q 010136 117 LHVSTAPS---TIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCT 193 (517)
Q Consensus 117 l~~~~~p~---~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~ 193 (517)
|.+.|.|. +++|+++..+.|..|+..+..+....+++|+||||||||+++++++++++ +.++++|+.
T Consensus 4 W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----------~~~ielnas 73 (482)
T PRK04195 4 WVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----------WEVIELNAS 73 (482)
T ss_pred chhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----------CCEEEEccc
Confidence 44566664 69999999999999999887666678999999999999999999998874 468999998
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC----chHHHHHhccCCCC
Q 010136 194 SLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD----RAVLHDLFMLTTFP 269 (517)
Q Consensus 194 ~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~----~~~L~~l~~~~~~~ 269 (517)
...+...+ ..+....... ..++ .....||||||+|.|.... ...|..+++. .
T Consensus 74 d~r~~~~i-~~~i~~~~~~-------------~sl~-------~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~---~ 129 (482)
T PRK04195 74 DQRTADVI-ERVAGEAATS-------------GSLF-------GARRKLILLDEVDGIHGNEDRGGARAILELIKK---A 129 (482)
T ss_pred ccccHHHH-HHHHHHhhcc-------------Cccc-------CCCCeEEEEecCcccccccchhHHHHHHHHHHc---C
Confidence 76554433 2222211000 0001 1245799999999997632 3444445442 2
Q ss_pred CCcEEEEEEECCCCcchhhcc-cccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHH
Q 010136 270 FSRFILIGIANAIDLADRFLP-RLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMR 348 (517)
Q Consensus 270 ~~~v~lI~ian~~~~~~~l~~-~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R 348 (517)
+..+|+++|+. ..+.+ .++++ + ..|.|++++..++..+|...+... ...+++++++.+++ ...||+|
T Consensus 130 --~~~iIli~n~~---~~~~~k~Lrsr-~--~~I~f~~~~~~~i~~~L~~i~~~e-gi~i~~eaL~~Ia~---~s~GDlR 197 (482)
T PRK04195 130 --KQPIILTANDP---YDPSLRELRNA-C--LMIEFKRLSTRSIVPVLKRICRKE-GIECDDEALKEIAE---RSGGDLR 197 (482)
T ss_pred --CCCEEEeccCc---cccchhhHhcc-c--eEEEecCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHH---HcCCCHH
Confidence 23355567753 33344 56666 5 689999999999999999877532 24688999999987 5789999
Q ss_pred HHHHHHHH
Q 010136 349 KALSVCRS 356 (517)
Q Consensus 349 ~al~ll~~ 356 (517)
.|++.++.
T Consensus 198 ~ain~Lq~ 205 (482)
T PRK04195 198 SAINDLQA 205 (482)
T ss_pred HHHHHHHH
Confidence 99998876
No 61
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=4.8e-17 Score=170.73 Aligned_cols=197 Identities=18% Similarity=0.181 Sum_probs=136.6
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCe-EEEEcCCCCcHHHHHHHHHHHHHHHHHhcCC--------------CCceEE
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGS-LYVCGCPGTGKSLSMEKVQHYLVDWAKEAGL--------------QQPEVF 188 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~-lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~--------------~~~~~v 188 (517)
++++|.+..++.|...+. .++..+ ++|+||||+|||++++.+++.+.+.....+. ....++
T Consensus 16 ~diiGq~~~v~~L~~~i~----~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dli 91 (546)
T PRK14957 16 AEVAGQQHALNSLVHALE----TQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLI 91 (546)
T ss_pred HHhcCcHHHHHHHHHHHH----cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 478999998877666654 344444 7899999999999999999988642110000 112344
Q ss_pred EEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCC
Q 010136 189 SINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF 268 (517)
Q Consensus 189 ~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~ 268 (517)
++++.......+ .+.+.+.+. .....+...|+||||+|.|....++.|...++.
T Consensus 92 eidaas~~gvd~---------------------ir~ii~~~~--~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEe--- 145 (546)
T PRK14957 92 EIDAASRTGVEE---------------------TKEILDNIQ--YMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEE--- 145 (546)
T ss_pred EeecccccCHHH---------------------HHHHHHHHH--hhhhcCCcEEEEEechhhccHHHHHHHHHHHhc---
Confidence 444432222111 111111111 111234567999999999987777778777765
Q ss_pred CCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHH
Q 010136 269 PFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMR 348 (517)
Q Consensus 269 ~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R 348 (517)
+...+.+|+++++ ...+.+.++|| | ..+.|.+++.+++...|...+... ...+++++++++++ .+.||+|
T Consensus 146 pp~~v~fIL~Ttd---~~kil~tI~SR-c--~~~~f~~Ls~~eI~~~L~~il~~e-gi~~e~~Al~~Ia~---~s~GdlR 215 (546)
T PRK14957 146 PPEYVKFILATTD---YHKIPVTILSR-C--IQLHLKHISQADIKDQLKIILAKE-NINSDEQSLEYIAY---HAKGSLR 215 (546)
T ss_pred CCCCceEEEEECC---hhhhhhhHHHh-e--eeEEeCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHH---HcCCCHH
Confidence 3456777777774 56677789999 7 799999999999999999877643 24789999999987 5789999
Q ss_pred HHHHHHHHHHHH
Q 010136 349 KALSVCRSAIEI 360 (517)
Q Consensus 349 ~al~ll~~A~~~ 360 (517)
.|++++..++.+
T Consensus 216 ~alnlLek~i~~ 227 (546)
T PRK14957 216 DALSLLDQAISF 227 (546)
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
No 62
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.1e-17 Score=161.59 Aligned_cols=221 Identities=16% Similarity=0.190 Sum_probs=149.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQN 227 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~ 227 (517)
.+.+++++||||||||.+|++++++.+. .|+.|....+++.+- |.+ .+.+..
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akeaga----------~fInv~~s~lt~KWf-----------------gE~-eKlv~A 177 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEAGA----------NFINVSVSNLTSKWF-----------------GEA-QKLVKA 177 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHcCC----------CcceeeccccchhhH-----------------HHH-HHHHHH
Confidence 4678999999999999999999988653 588888888877443 222 566777
Q ss_pred HHHhhhccCCCceEEEEEeCcchhcccCc----hH---HHH--Hhcc---CCCCCCcEEEEEEECCCCcchhhccccccc
Q 010136 228 LYSQKLHSSVMKMMLIIADELDYLITRDR----AV---LHD--LFML---TTFPFSRFILIGIANAIDLADRFLPRLQSM 295 (517)
Q Consensus 228 ~~~~~~~~~~~~~~vI~iDEiD~L~~~~~----~~---L~~--l~~~---~~~~~~~v~lI~ian~~~~~~~l~~~l~sr 295 (517)
+|. .+.+-.|+||||||+|.+...++ ++ +.. ++.| .+....+|+|+|+|| .+..++.++.+|
T Consensus 178 vFs---lAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATN---RP~DlDeAiiRR 251 (386)
T KOG0737|consen 178 VFS---LASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATN---RPFDLDEAIIRR 251 (386)
T ss_pred HHh---hhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCC---CCccHHHHHHHh
Confidence 776 44577899999999999985432 11 111 2345 334456799999999 478889999998
Q ss_pred CCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChh-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhh----h
Q 010136 296 NCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQ-ALELCARKVAAASGDMRKALSVCRSAIEILEAEMRESV----S 370 (517)
Q Consensus 296 ~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~-ai~~ia~~~~~~~Gd~R~al~ll~~A~~~a~~~~~~~~----~ 370 (517)
+ ++++++.-++..+..+||.-.+... .++++ .+..+|..+.+++|. ...++|+.|.....++...+. +
T Consensus 252 -~-p~rf~V~lP~~~qR~kILkviLk~e---~~e~~vD~~~iA~~t~GySGS--DLkelC~~Aa~~~ire~~~~~~~~~d 324 (386)
T KOG0737|consen 252 -L-PRRFHVGLPDAEQRRKILKVILKKE---KLEDDVDLDEIAQMTEGYSGS--DLKELCRLAALRPIRELLVSETGLLD 324 (386)
T ss_pred -C-cceeeeCCCchhhHHHHHHHHhccc---ccCcccCHHHHHHhcCCCcHH--HHHHHHHHHhHhHHHHHHHhcccchh
Confidence 4 6899999999999999999888753 33333 377888888788884 444789998877666655432 0
Q ss_pred ccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccCh
Q 010136 371 KMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSP 413 (517)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~ 413 (517)
......+..+.+. .+.......+.++|+..+.+.+..+.
T Consensus 325 ~d~~~~d~~~~~~----~~~~~~~r~l~~eDf~~a~~~v~~~~ 363 (386)
T KOG0737|consen 325 LDKAIADLKPTQA----AASSCLLRPLEQEDFPKAINRVSASV 363 (386)
T ss_pred hhhhhhhccCCcc----cccccccCcccHHHHHHHHHhhhhHH
Confidence 0000000000100 00011122678888888888776553
No 63
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.75 E-value=1.1e-16 Score=173.86 Aligned_cols=191 Identities=17% Similarity=0.223 Sum_probs=134.3
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFS 203 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~ 203 (517)
++++|++..+.. ...|...+..+..++++|+||||||||++++.+++.+. ..++.+||... ....+ .
T Consensus 28 dd~vGQe~ii~~-~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~----------~~f~~lna~~~-~i~di-r 94 (725)
T PRK13341 28 EEFVGQDHILGE-GRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR----------AHFSSLNAVLA-GVKDL-R 94 (725)
T ss_pred HHhcCcHHHhhh-hHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc----------Ccceeehhhhh-hhHHH-H
Confidence 467899887753 23344455566778999999999999999999998754 25677777532 11111 0
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCCC
Q 010136 204 KILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAID 283 (517)
Q Consensus 204 ~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~ 283 (517)
.+ .......+. ......+|||||||.|....|+.|...++ ...+++|++++. +
T Consensus 95 ~~----------------i~~a~~~l~-----~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE-----~g~IiLI~aTTe-n 147 (725)
T PRK13341 95 AE----------------VDRAKERLE-----RHGKRTILFIDEVHRFNKAQQDALLPWVE-----NGTITLIGATTE-N 147 (725)
T ss_pred HH----------------HHHHHHHhh-----hcCCceEEEEeChhhCCHHHHHHHHHHhc-----CceEEEEEecCC-C
Confidence 00 011111111 12345799999999998766777766553 356888886643 3
Q ss_pred cchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhh------hccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 010136 284 LADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLME------LSYIVFQPQALELCARKVAAASGDMRKALSVCRSA 357 (517)
Q Consensus 284 ~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~------~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A 357 (517)
....+.+++.|| + ..+.|+|++.+++..+++..+.. .....+++++++++++. ..||+|.++++++.+
T Consensus 148 p~~~l~~aL~SR-~--~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~---s~GD~R~lln~Le~a 221 (725)
T PRK13341 148 PYFEVNKALVSR-S--RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDV---ANGDARSLLNALELA 221 (725)
T ss_pred hHhhhhhHhhcc-c--cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHh---CCCCHHHHHHHHHHH
Confidence 334578899998 6 58999999999999999987752 22357899999999884 589999999999988
Q ss_pred HHH
Q 010136 358 IEI 360 (517)
Q Consensus 358 ~~~ 360 (517)
+..
T Consensus 222 ~~~ 224 (725)
T PRK13341 222 VES 224 (725)
T ss_pred HHh
Confidence 743
No 64
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=8.8e-17 Score=165.92 Aligned_cols=244 Identities=21% Similarity=0.328 Sum_probs=183.7
Q ss_pred chhhhhhhhccCCCCCCCCh-hHHHHHHhhcCcCCCCCCCCCcHHHHHHHHHHHHHhhcc--CCCCeEEEEcCCCCcHHH
Q 010136 88 VKKKLCDSFKSKPNWNPQDV-EQMSAVREALHVSTAPSTIVCREDEQKKVLEFCKKNLEE--EKAGSLYVCGCPGTGKSL 164 (517)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~p~~l~gRe~e~~~l~~~L~~~l~~--~~~~~lli~G~pGtGKT~ 164 (517)
..+.+.+++..-||...-.. -.+..|++.|++++ +|.++..++|.+||.-..-. -.+..++|+||||+|||+
T Consensus 379 vtrNYLdwlt~LPWgk~S~En~dl~~Ak~iLdeDH-----Ygm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTS 453 (906)
T KOG2004|consen 379 VTRNYLDWLTSLPWGKSSTENLDLARAKEILDEDH-----YGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTS 453 (906)
T ss_pred HHHHHHHHHHhCCCCCCChhhhhHHHHHHhhcccc-----cchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCccc
Confidence 45667888888886544322 36789999999987 89999999999997654332 346688999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEE
Q 010136 165 SMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLII 244 (517)
Q Consensus 165 l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~ 244 (517)
+++.+++.|++ .|+.++....++..+ +.++...+.|..+.+.++.+-. -...+.+++
T Consensus 454 I~kSIA~ALnR----------kFfRfSvGG~tDvAe--------IkGHRRTYVGAMPGkiIq~LK~-----v~t~NPliL 510 (906)
T KOG2004|consen 454 IAKSIARALNR----------KFFRFSVGGMTDVAE--------IKGHRRTYVGAMPGKIIQCLKK-----VKTENPLIL 510 (906)
T ss_pred HHHHHHHHhCC----------ceEEEeccccccHHh--------hcccceeeeccCChHHHHHHHh-----hCCCCceEE
Confidence 99999999985 688888887777665 4778888888888888887764 244556889
Q ss_pred EeCcchhcccCc----hHHHHHhccCCC------------CCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCC
Q 010136 245 ADELDYLITRDR----AVLHDLFMLTTF------------PFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYS 308 (517)
Q Consensus 245 iDEiD~L~~~~~----~~L~~l~~~~~~------------~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~ 308 (517)
|||||.+....| .+|.++++-.+. .-++|.|||++|. .+.+.+.|+.| + +.|.++.|.
T Consensus 511 iDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~---idtIP~pLlDR-M--EvIelsGYv 584 (906)
T KOG2004|consen 511 IDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANV---IDTIPPPLLDR-M--EVIELSGYV 584 (906)
T ss_pred eehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccc---cccCChhhhhh-h--heeeccCcc
Confidence 999999986433 567777665322 3378999999996 55678889998 7 799999999
Q ss_pred HHHHHHHHHHHHh--hh-------ccCCCChhHHHHHHHHHHHHhC--CHHHHH-HHHHHH-HHHHHHHH
Q 010136 309 KDQIIRILQERLM--EL-------SYIVFQPQALELCARKVAAASG--DMRKAL-SVCRSA-IEILEAEM 365 (517)
Q Consensus 309 ~~e~~~IL~~rl~--~~-------~~~~~~~~ai~~ia~~~~~~~G--d~R~al-~ll~~A-~~~a~~~~ 365 (517)
.+|-.+|.+..|- .. ....++++++..+.+.+++.+| ++.+-+ .+||.+ ..+++...
T Consensus 585 ~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~iekI~Rk~Al~vv~~~~ 654 (906)
T KOG2004|consen 585 AEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQIEKICRKVALKVVEGEN 654 (906)
T ss_pred HHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999998873 11 1356778888888888877777 444433 566654 45565543
No 65
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.75 E-value=9.9e-17 Score=170.83 Aligned_cols=196 Identities=24% Similarity=0.284 Sum_probs=136.5
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCe-EEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCC--------------CceEE
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGS-LYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQ--------------QPEVF 188 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~-lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~--------------~~~~v 188 (517)
++++|++...+.|..++.. +..++ +||+||+|||||++++.+++.+.+.....+.+ .+.++
T Consensus 16 ~~viGq~~v~~~L~~~i~~----~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~ 91 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQ----GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVI 91 (559)
T ss_pred HhccCcHHHHHHHHHHHHc----CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeE
Confidence 5799999977766666543 44444 67899999999999999999887532111111 12333
Q ss_pred EEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhcccCchHHHHHhccCC
Q 010136 189 SINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTT 267 (517)
Q Consensus 189 ~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~ 267 (517)
++++....+ .+.++.+.... ......+..|+||||+|.|.....+.|...++.
T Consensus 92 eidaas~~~------------------------vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEe-- 145 (559)
T PRK05563 92 EIDAASNNG------------------------VDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEE-- 145 (559)
T ss_pred EeeccccCC------------------------HHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcC--
Confidence 333322111 33334333321 122345678999999999976656666555544
Q ss_pred CCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCH
Q 010136 268 FPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDM 347 (517)
Q Consensus 268 ~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~ 347 (517)
+...+++|++++. +..+.+.++|| | ..+.|.+++.+++..+|...+... ...+++++++.+++ ...||+
T Consensus 146 -pp~~~ifIlatt~---~~ki~~tI~SR-c--~~~~f~~~~~~ei~~~L~~i~~~e-gi~i~~~al~~ia~---~s~G~~ 214 (559)
T PRK05563 146 -PPAHVIFILATTE---PHKIPATILSR-C--QRFDFKRISVEDIVERLKYILDKE-GIEYEDEALRLIAR---AAEGGM 214 (559)
T ss_pred -CCCCeEEEEEeCC---hhhCcHHHHhH-h--eEEecCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHH---HcCCCH
Confidence 4457778877763 56788889999 7 689999999999999999888643 23678999999988 468999
Q ss_pred HHHHHHHHHHHHH
Q 010136 348 RKALSVCRSAIEI 360 (517)
Q Consensus 348 R~al~ll~~A~~~ 360 (517)
|.|++++..++.+
T Consensus 215 R~al~~Ldq~~~~ 227 (559)
T PRK05563 215 RDALSILDQAISF 227 (559)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988754
No 66
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.74 E-value=1.4e-16 Score=166.33 Aligned_cols=204 Identities=19% Similarity=0.256 Sum_probs=141.9
Q ss_pred cCcCCCC---CCCCCcHHHHHHHHHHHHHhhccCCCCe-EEEEcCCCCcHHHHHHHHHHHHHHHHHhcC-----------
Q 010136 117 LHVSTAP---STIVCREDEQKKVLEFCKKNLEEEKAGS-LYVCGCPGTGKSLSMEKVQHYLVDWAKEAG----------- 181 (517)
Q Consensus 117 l~~~~~p---~~l~gRe~e~~~l~~~L~~~l~~~~~~~-lli~G~pGtGKT~l~~~v~~~l~~~~~~~~----------- 181 (517)
|...|.| ++++|.+...+.|..++. .+..++ ++|+||+|+|||++++.+++.+.+......
T Consensus 4 l~~KyRP~~fdeiiGqe~v~~~L~~~I~----~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~ 79 (535)
T PRK08451 4 LALKYRPKHFDELIGQESVSKTLSLALD----NNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQS 79 (535)
T ss_pred HHHHHCCCCHHHccCcHHHHHHHHHHHH----cCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Confidence 3445555 479999987766666654 345554 579999999999999999998864211000
Q ss_pred ---CCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhcccCch
Q 010136 182 ---LQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITRDRA 257 (517)
Q Consensus 182 ---~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~~~ 257 (517)
..++.++.+++..... .+.++.+.... .........|+||||+|.|....++
T Consensus 80 ~~~~~h~dv~eldaas~~g------------------------Id~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~N 135 (535)
T PRK08451 80 ALENRHIDIIEMDAASNRG------------------------IDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFN 135 (535)
T ss_pred HhhcCCCeEEEeccccccC------------------------HHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHH
Confidence 0112344444332211 23333333210 1112345679999999999877778
Q ss_pred HHHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHH
Q 010136 258 VLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCA 337 (517)
Q Consensus 258 ~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia 337 (517)
.|...++.+ ...+.+|+++++ +..+.+.++|| + ..+.|.+++.+++...+...+... ...+++++++.++
T Consensus 136 ALLK~LEEp---p~~t~FIL~ttd---~~kL~~tI~SR-c--~~~~F~~Ls~~ei~~~L~~Il~~E-Gi~i~~~Al~~Ia 205 (535)
T PRK08451 136 ALLKTLEEP---PSYVKFILATTD---PLKLPATILSR-T--QHFRFKQIPQNSIISHLKTILEKE-GVSYEPEALEILA 205 (535)
T ss_pred HHHHHHhhc---CCceEEEEEECC---hhhCchHHHhh-c--eeEEcCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHH
Confidence 887777664 345677777774 46778899999 7 799999999999999999887643 2467999999998
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHH
Q 010136 338 RKVAAASGDMRKALSVCRSAIEIL 361 (517)
Q Consensus 338 ~~~~~~~Gd~R~al~ll~~A~~~a 361 (517)
+ ...||+|.|+++|..|+..+
T Consensus 206 ~---~s~GdlR~alnlLdqai~~~ 226 (535)
T PRK08451 206 R---SGNGSLRDTLTLLDQAIIYC 226 (535)
T ss_pred H---HcCCcHHHHHHHHHHHHHhc
Confidence 8 57899999999999988654
No 67
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.74 E-value=6.2e-17 Score=169.87 Aligned_cols=205 Identities=16% Similarity=0.191 Sum_probs=138.7
Q ss_pred hcCcCCCC---CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCC----------
Q 010136 116 ALHVSTAP---STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGL---------- 182 (517)
Q Consensus 116 ~l~~~~~p---~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~---------- 182 (517)
.|...|.| ++++|++...+.+..++.. +..+..++|+||+|+|||++|+.+++.+.+.....+.
T Consensus 5 ~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~---~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~ 81 (605)
T PRK05896 5 TFYRKYRPHNFKQIIGQELIKKILVNAILN---NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCES 81 (605)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHc---CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Confidence 34445555 4789999987776666543 2234568899999999999999999998642110000
Q ss_pred ----CCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhcccCch
Q 010136 183 ----QQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITRDRA 257 (517)
Q Consensus 183 ----~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~~~ 257 (517)
....++++++..... .+.++.+.... .........|+||||+|.|....++
T Consensus 82 i~~~~h~DiieIdaas~ig------------------------Vd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~N 137 (605)
T PRK05896 82 INTNQSVDIVELDAASNNG------------------------VDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWN 137 (605)
T ss_pred HHcCCCCceEEeccccccC------------------------HHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHH
Confidence 012233333322111 22333333210 1111234568999999999776677
Q ss_pred HHHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHH
Q 010136 258 VLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCA 337 (517)
Q Consensus 258 ~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia 337 (517)
.|...++.+ ...+++|++++. +..+.+.++|| | ..+.|.+++.+++..+|...+... ...+++++++.++
T Consensus 138 aLLKtLEEP---p~~tvfIL~Tt~---~~KLl~TI~SR-c--q~ieF~~Ls~~eL~~~L~~il~ke-gi~Is~eal~~La 207 (605)
T PRK05896 138 ALLKTLEEP---PKHVVFIFATTE---FQKIPLTIISR-C--QRYNFKKLNNSELQELLKSIAKKE-KIKIEDNAIDKIA 207 (605)
T ss_pred HHHHHHHhC---CCcEEEEEECCC---hHhhhHHHHhh-h--hhcccCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHH
Confidence 777777653 356777777763 57788899999 7 689999999999999999887643 2368899999987
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHH
Q 010136 338 RKVAAASGDMRKALSVCRSAIEI 360 (517)
Q Consensus 338 ~~~~~~~Gd~R~al~ll~~A~~~ 360 (517)
+ .+.||+|.|++++..+..+
T Consensus 208 ~---lS~GdlR~AlnlLekL~~y 227 (605)
T PRK05896 208 D---LADGSLRDGLSILDQLSTF 227 (605)
T ss_pred H---HcCCcHHHHHHHHHHHHhh
Confidence 7 4789999999999886543
No 68
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.74 E-value=3.2e-17 Score=174.42 Aligned_cols=226 Identities=15% Similarity=0.171 Sum_probs=145.1
Q ss_pred cCcCCCCC---CCCCcHHHHHHHHHHHHHhhccCCC-CeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeC
Q 010136 117 LHVSTAPS---TIVCREDEQKKVLEFCKKNLEEEKA-GSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINC 192 (517)
Q Consensus 117 l~~~~~p~---~l~gRe~e~~~l~~~L~~~l~~~~~-~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~ 192 (517)
|.+.|.|. +++|.++.++.+..++........+ ..++|+||||||||++++.+++.+.....++. -.++|
T Consensus 74 W~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~------npv~~ 147 (637)
T TIGR00602 74 WVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWS------NPTLP 147 (637)
T ss_pred hHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHh------hhhhh
Confidence 44456664 7999999999999998876554333 35999999999999999999998875544321 12333
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhc-------cCCCceEEEEEeCcchhcccCchHHHHHhcc
Q 010136 193 TSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLH-------SSVMKMMLIIADELDYLITRDRAVLHDLFML 265 (517)
Q Consensus 193 ~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~ 265 (517)
....+.+.+...+..++... .+..+.+..++..... .......||||||+|.+.......++.++.|
T Consensus 148 ~~~~~~~~~~~s~~~~~~~~------~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~ 221 (637)
T TIGR00602 148 DFQKNDHKVTLSLESCFSNF------QSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRW 221 (637)
T ss_pred cccccccccchhhhhccccc------cchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHH
Confidence 33333333222233332111 1123334444332110 0124568999999999987777788998886
Q ss_pred CCCCCCcEEEEEEECCCC----------cc-hh-hcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhh-----ccCCC
Q 010136 266 TTFPFSRFILIGIANAID----------LA-DR-FLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMEL-----SYIVF 328 (517)
Q Consensus 266 ~~~~~~~v~lI~ian~~~----------~~-~~-l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~-----~~~~~ 328 (517)
.......+.||+|++... ++ ++ +.+.+.++ .....|.|+||+..++.+.|...+... ....+
T Consensus 222 ~~~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~-~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~ 300 (637)
T TIGR00602 222 KYVSIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEE-PRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKV 300 (637)
T ss_pred HhhcCCCceEEEEecCCccccccccccccchhcccCHhHhcc-cceeEEEeCCCCHHHHHHHHHHHHHhhhhcccccccc
Confidence 444455677888777421 11 11 22566664 445789999999999888887666531 11122
Q ss_pred -ChhHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 010136 329 -QPQALELCARKVAAASGDMRKALSVCRSAI 358 (517)
Q Consensus 329 -~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~ 358 (517)
++++++.++. ...||+|.||+.|+.++
T Consensus 301 p~~~~l~~I~~---~s~GDiRsAIn~LQf~~ 328 (637)
T TIGR00602 301 PKKTSVELLCQ---GCSGDIRSAINSLQFSS 328 (637)
T ss_pred CCHHHHHHHHH---hCCChHHHHHHHHHHHH
Confidence 4567777655 78999999999999874
No 69
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=4.8e-18 Score=158.12 Aligned_cols=220 Identities=18% Similarity=0.198 Sum_probs=153.3
Q ss_pred CCCCcHHHHHHHHHHHHHhhc---------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCC
Q 010136 125 TIVCREDEQKKVLEFCKKNLE---------EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSL 195 (517)
Q Consensus 125 ~l~gRe~e~~~l~~~L~~~l~---------~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~ 195 (517)
++-|.+.++++|.+.+.--+. -..+.++++||+||||||.+|++++++-. ..|+.+-++.+
T Consensus 186 diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTS----------ATFlRvvGseL 255 (440)
T KOG0726|consen 186 DIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTS----------ATFLRVVGSEL 255 (440)
T ss_pred ccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccc----------hhhhhhhhHHH
Confidence 688999999999998765433 12477999999999999999999987643 24555555443
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC-----------chHHHHHhc
Q 010136 196 TNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD-----------RAVLHDLFM 264 (517)
Q Consensus 196 ~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~-----------~~~L~~l~~ 264 (517)
|-+.+ |.. -+.++++|. .+....|.|+||||||.+.+++ |..+..|++
T Consensus 256 ---------iQkyl--------GdG-pklvRqlF~---vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLN 314 (440)
T KOG0726|consen 256 ---------IQKYL--------GDG-PKLVRELFR---VAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLN 314 (440)
T ss_pred ---------HHHHh--------ccc-hHHHHHHHH---HHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHH
Confidence 11222 222 456777776 4456788999999999998753 233444444
Q ss_pred cC--CCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhH-HHHHHHHHH
Q 010136 265 LT--TFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQA-LELCARKVA 341 (517)
Q Consensus 265 ~~--~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~a-i~~ia~~~~ 341 (517)
-. -.....|-||.++|. .+.++|.+.+.....+.|.|+-++......|+.-.-... .+..++ ++.+...-.
T Consensus 315 QldGFdsrgDvKvimATnr---ie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~M---tl~~dVnle~li~~kd 388 (440)
T KOG0726|consen 315 QLDGFDSRGDVKVIMATNR---IETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRM---TLAEDVNLEELIMTKD 388 (440)
T ss_pred hccCccccCCeEEEEeccc---ccccCHhhcCCCccccccccCCCchhhhceeEEEeeccc---chhccccHHHHhhccc
Confidence 31 123567889999995 667889988876667899999999988888877544432 222222 333322112
Q ss_pred HHhC-CHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccC
Q 010136 342 AASG-DMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKS 412 (517)
Q Consensus 342 ~~~G-d~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~ 412 (517)
..+| |+. .+|.+|..+|.++.+. .|+++||.+|...+..+
T Consensus 389 dlSGAdIk---AictEaGllAlRerRm----------------------------~vt~~DF~ka~e~V~~~ 429 (440)
T KOG0726|consen 389 DLSGADIK---AICTEAGLLALRERRM----------------------------KVTMEDFKKAKEKVLYK 429 (440)
T ss_pred ccccccHH---HHHHHHhHHHHHHHHh----------------------------hccHHHHHHHHHHHHHh
Confidence 3344 443 5899999999999988 89999999999887643
No 70
>PRK06893 DNA replication initiation factor; Validated
Probab=99.74 E-value=6.5e-17 Score=153.96 Aligned_cols=194 Identities=15% Similarity=0.143 Sum_probs=124.4
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHH
Q 010136 121 TAPSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSE 200 (517)
Q Consensus 121 ~~p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~ 200 (517)
...+++++.+... +...+.........+.+||+||||||||+++.++++++... + ..+.|++.... ..
T Consensus 13 ~~fd~f~~~~~~~--~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~----~---~~~~y~~~~~~---~~ 80 (229)
T PRK06893 13 ETLDNFYADNNLL--LLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN----Q---RTAIYIPLSKS---QY 80 (229)
T ss_pred ccccccccCChHH--HHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc----C---CCeEEeeHHHh---hh
Confidence 3445566544322 23333333333445678999999999999999999987542 1 24566665321 00
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC--chHHHHHhccCCCCCCcEEEEEE
Q 010136 201 IFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD--RAVLHDLFMLTTFPFSRFILIGI 278 (517)
Q Consensus 201 i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~--~~~L~~l~~~~~~~~~~v~lI~i 278 (517)
.. .+.+. ......+|+|||++.+.... +..|+.+++.....+..+++++.
T Consensus 81 ~~-----------------------~~~~~-----~~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits 132 (229)
T PRK06893 81 FS-----------------------PAVLE-----NLEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISA 132 (229)
T ss_pred hh-----------------------HHHHh-----hcccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeC
Confidence 00 01111 11234699999999986543 35677877764333344445543
Q ss_pred ECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 010136 279 ANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRSAI 358 (517)
Q Consensus 279 an~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~ 358 (517)
..........++++.||......+.+.+++.+++.+||+..+... .-.+++++++++++ ...||+|.++.++....
T Consensus 133 ~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~-~l~l~~~v~~~L~~---~~~~d~r~l~~~l~~l~ 208 (229)
T PRK06893 133 DCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQR-GIELSDEVANFLLK---RLDRDMHTLFDALDLLD 208 (229)
T ss_pred CCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHH---hccCCHHHHHHHHHHHH
Confidence 332222233458899983334588999999999999999777532 24789999999998 57899999999888753
No 71
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=9.6e-17 Score=169.76 Aligned_cols=196 Identities=21% Similarity=0.251 Sum_probs=135.1
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCe-EEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCC--------------CceEE
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGS-LYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQ--------------QPEVF 188 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~-lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~--------------~~~~v 188 (517)
++++|.+..++.|..++. .+...+ ++|+||||+|||++++.+++.+.......+.+ ...++
T Consensus 16 ~divGq~~v~~~L~~~i~----~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ 91 (527)
T PRK14969 16 SELVGQEHVVRALTNALE----QQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLI 91 (527)
T ss_pred HHhcCcHHHHHHHHHHHH----cCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCcee
Confidence 478999997776666654 345555 57999999999999999999986421100000 01233
Q ss_pred EEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhcccCchHHHHHhccCC
Q 010136 189 SINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTT 267 (517)
Q Consensus 189 ~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~ 267 (517)
++++..... .+.+++++... .....++..|+||||+|.|....++.|...++.
T Consensus 92 ei~~~~~~~------------------------vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEe-- 145 (527)
T PRK14969 92 EVDAASNTQ------------------------VDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEE-- 145 (527)
T ss_pred EeeccccCC------------------------HHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhC--
Confidence 333322111 23334333321 111234567999999999977666666666655
Q ss_pred CCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCH
Q 010136 268 FPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDM 347 (517)
Q Consensus 268 ~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~ 347 (517)
+...+.+|+++++ +..+.+.++|| | ..+.|.+++.+++.+.|...+... ...+++++++++++ .+.||+
T Consensus 146 -pp~~~~fIL~t~d---~~kil~tI~SR-c--~~~~f~~l~~~~i~~~L~~il~~e-gi~~~~~al~~la~---~s~Gsl 214 (527)
T PRK14969 146 -PPEHVKFILATTD---PQKIPVTVLSR-C--LQFNLKQMPPPLIVSHLQHILEQE-NIPFDATALQLLAR---AAAGSM 214 (527)
T ss_pred -CCCCEEEEEEeCC---hhhCchhHHHH-H--HHHhcCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHH---HcCCCH
Confidence 3457778887874 55666778998 7 789999999999999999887632 24678999999987 478999
Q ss_pred HHHHHHHHHHHHH
Q 010136 348 RKALSVCRSAIEI 360 (517)
Q Consensus 348 R~al~ll~~A~~~ 360 (517)
|.|++++..++..
T Consensus 215 r~al~lldqai~~ 227 (527)
T PRK14969 215 RDALSLLDQAIAY 227 (527)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988754
No 72
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=1.9e-16 Score=169.42 Aligned_cols=204 Identities=22% Similarity=0.237 Sum_probs=139.0
Q ss_pred hcCcCCCC---CCCCCcHHHHHHHHHHHHHhhccCCCC-eEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCC---------
Q 010136 116 ALHVSTAP---STIVCREDEQKKVLEFCKKNLEEEKAG-SLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGL--------- 182 (517)
Q Consensus 116 ~l~~~~~p---~~l~gRe~e~~~l~~~L~~~l~~~~~~-~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~--------- 182 (517)
.|...|.| ++++|++..++.|...+. .++.. .++|+||+|+|||++|+.+++.+.+.......
T Consensus 7 ~l~~KyRP~~f~dIiGQe~~v~~L~~aI~----~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~ 82 (725)
T PRK07133 7 ALYRKYRPKTFDDIVGQDHIVQTLKNIIK----SNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIEN 82 (725)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHH----cCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHh
Confidence 34445566 379999998777666654 34444 46799999999999999999988753210000
Q ss_pred --CCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhcccCchHH
Q 010136 183 --QQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITRDRAVL 259 (517)
Q Consensus 183 --~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~~~~L 259 (517)
..+.++++++....+ .+.++.+.... .....++..|+||||+|.|....++.|
T Consensus 83 ~~~~~Dvieidaasn~~------------------------vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NAL 138 (725)
T PRK07133 83 VNNSLDIIEMDAASNNG------------------------VDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNAL 138 (725)
T ss_pred hcCCCcEEEEeccccCC------------------------HHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHH
Confidence 001222222211111 23333333321 122235667999999999987667777
Q ss_pred HHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHH
Q 010136 260 HDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARK 339 (517)
Q Consensus 260 ~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~ 339 (517)
...++.+ ...+++|++++. ++.+.+.++|| | +++.|.+++.+++..+|...+.... ..+++++++.+|+
T Consensus 139 LKtLEEP---P~~tifILaTte---~~KLl~TI~SR-c--q~ieF~~L~~eeI~~~L~~il~keg-I~id~eAl~~LA~- 207 (725)
T PRK07133 139 LKTLEEP---PKHVIFILATTE---VHKIPLTILSR-V--QRFNFRRISEDEIVSRLEFILEKEN-ISYEKNALKLIAK- 207 (725)
T ss_pred HHHhhcC---CCceEEEEEcCC---hhhhhHHHHhh-c--eeEEccCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHH-
Confidence 7766653 457778887764 56788889999 7 6999999999999999998876432 3678889999887
Q ss_pred HHHHhCCHHHHHHHHHHHHHH
Q 010136 340 VAAASGDMRKALSVCRSAIEI 360 (517)
Q Consensus 340 ~~~~~Gd~R~al~ll~~A~~~ 360 (517)
.+.|++|.|+.++..+..+
T Consensus 208 --lS~GslR~AlslLekl~~y 226 (725)
T PRK07133 208 --LSSGSLRDALSIAEQVSIF 226 (725)
T ss_pred --HcCCCHHHHHHHHHHHHHh
Confidence 4779999999999887543
No 73
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.73 E-value=4.7e-16 Score=161.45 Aligned_cols=310 Identities=15% Similarity=0.130 Sum_probs=183.6
Q ss_pred hcCcCCCCCCCC-CcHHHHHHHHHHHHHhhcc-CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCC
Q 010136 116 ALHVSTAPSTIV-CREDEQKKVLEFCKKNLEE-EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCT 193 (517)
Q Consensus 116 ~l~~~~~p~~l~-gRe~e~~~l~~~L~~~l~~-~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~ 193 (517)
.+++.+..++++ |-..+. ....+...... +..++++|||++|+|||++++++++++.... +...++|+++.
T Consensus 97 ~l~~~~tFdnFv~g~~n~~--a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~-----~~~~v~yi~~~ 169 (440)
T PRK14088 97 PLNPDYTFENFVVGPGNSF--AYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNE-----PDLRVMYITSE 169 (440)
T ss_pred CCCCCCcccccccCCchHH--HHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhC-----CCCeEEEEEHH
Confidence 356677777666 543332 22233332222 2245799999999999999999999886421 12468898874
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC--chHHHHHhccCCCCCC
Q 010136 194 SLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD--RAVLHDLFMLTTFPFS 271 (517)
Q Consensus 194 ~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~--~~~L~~l~~~~~~~~~ 271 (517)
.++..+...+... ....+.+.+. ..+.+|+|||++.+.... ++.|..+++.....+
T Consensus 170 ------~f~~~~~~~~~~~--------~~~~f~~~~~-------~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~- 227 (440)
T PRK14088 170 ------KFLNDLVDSMKEG--------KLNEFREKYR-------KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSG- 227 (440)
T ss_pred ------HHHHHHHHHHhcc--------cHHHHHHHHH-------hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcC-
Confidence 3445555555211 1223333221 135699999999987543 455666665533222
Q ss_pred cEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHH
Q 010136 272 RFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKAL 351 (517)
Q Consensus 272 ~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al 351 (517)
..+|+++.+.......+.+++.||......+.|.|++.+.+.+||+.++... ...++++++++||+ ...||+|...
T Consensus 228 k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~-~~~l~~ev~~~Ia~---~~~~~~R~L~ 303 (440)
T PRK14088 228 KQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIE-HGELPEEVLNFVAE---NVDDNLRRLR 303 (440)
T ss_pred CeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhc-CCCCCHHHHHHHHh---ccccCHHHHH
Confidence 3344442333333445778999993334588999999999999999887632 34789999999998 4688999888
Q ss_pred HHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccChhHHHhccCCHHHHHHHH-
Q 010136 352 SVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSPVVDTIKSLPQHQQILLC- 430 (517)
Q Consensus 352 ~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~~~~~i~~L~~~~k~iL~- 430 (517)
.++.+....+...++.-.... ....+.+. -........|+++.+.+++.+.++-. .+.+.+-+.+..+++.
T Consensus 304 g~l~~l~~~~~~~~~~it~~~----a~~~L~~~---~~~~~~~~~i~~~~I~~~V~~~~~i~-~~~l~s~~R~~~i~~aR 375 (440)
T PRK14088 304 GAIIKLLVYKETTGEEVDLKE----AILLLKDF---IKPNRVKAMDPIDELIEIVAKVTGVS-REEILSNSRNVKALLAR 375 (440)
T ss_pred HHHHHHHHHHHHhCCCCCHHH----HHHHHHHH---hccccccCCCCHHHHHHHHHHHcCCc-HHHHhCCCCCccccHHH
Confidence 877766544443332100000 00000000 00000011488888888888888655 4556666666666554
Q ss_pred --HHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhh
Q 010136 431 --SAVKFFRGGKKDMTVGELNKSYMNICKTSLIPPVGTLEFFSMCRVLHD 478 (517)
Q Consensus 431 --al~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~L~~ 478 (517)
||+.+ +. .... .|.++|+.++ .+.+.+...+..++.
T Consensus 376 ~iamyl~-r~-~~~~-------s~~~Ig~~fg---r~hstV~~a~~~i~~ 413 (440)
T PRK14088 376 RIGMYVA-KN-YLGS-------SLRTIAEKFN---RSHPVVVDSVKKVKD 413 (440)
T ss_pred HHHHHHH-HH-HhCC-------CHHHHHHHhC---CCHHHHHHHHHHHHH
Confidence 44433 21 1112 4455677775 566777777766665
No 74
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=4.3e-16 Score=161.93 Aligned_cols=203 Identities=18% Similarity=0.162 Sum_probs=136.6
Q ss_pred cCcCCCC---CCCCCcHHHHHHHHHHHHHhhccCC-CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCC----------
Q 010136 117 LHVSTAP---STIVCREDEQKKVLEFCKKNLEEEK-AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGL---------- 182 (517)
Q Consensus 117 l~~~~~p---~~l~gRe~e~~~l~~~L~~~l~~~~-~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~---------- 182 (517)
|...|.| ++++|++..++.|..++.. +. +..++|+||||+|||++++.+++.+.......+.
T Consensus 7 ~~~kyRP~~~~diiGq~~~v~~L~~~i~~----~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~ 82 (451)
T PRK06305 7 SSRKYRPQTFSEILGQDAVVAVLKNALRF----NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCK 82 (451)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHc----CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHH
Confidence 3344444 5799999987766666543 44 4568899999999999999999988642110000
Q ss_pred -----CCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCch
Q 010136 183 -----QQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRA 257 (517)
Q Consensus 183 -----~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~ 257 (517)
..+.++++++........ ...+.+.+. .........||||||+|.|....++
T Consensus 83 ~i~~~~~~d~~~i~g~~~~gid~---------------------ir~i~~~l~--~~~~~~~~kvvIIdead~lt~~~~n 139 (451)
T PRK06305 83 EISSGTSLDVLEIDGASHRGIED---------------------IRQINETVL--FTPSKSRYKIYIIDEVHMLTKEAFN 139 (451)
T ss_pred HHhcCCCCceEEeeccccCCHHH---------------------HHHHHHHHH--hhhhcCCCEEEEEecHHhhCHHHHH
Confidence 012344444332221111 111122111 1112345679999999999766566
Q ss_pred HHHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHH
Q 010136 258 VLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCA 337 (517)
Q Consensus 258 ~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia 337 (517)
.|...++. +...+++|++++. ...+.+.++|| | ..+.|.+++.+++..+|...+... ...+++++++.++
T Consensus 140 ~LLk~lEe---p~~~~~~Il~t~~---~~kl~~tI~sR-c--~~v~f~~l~~~el~~~L~~~~~~e-g~~i~~~al~~L~ 209 (451)
T PRK06305 140 SLLKTLEE---PPQHVKFFLATTE---IHKIPGTILSR-C--QKMHLKRIPEETIIDKLALIAKQE-GIETSREALLPIA 209 (451)
T ss_pred HHHHHhhc---CCCCceEEEEeCC---hHhcchHHHHh-c--eEEeCCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHH
Confidence 66666554 3457777777764 46788899999 7 689999999999999999877642 2368999999998
Q ss_pred HHHHHHhCCHHHHHHHHHHHHH
Q 010136 338 RKVAAASGDMRKALSVCRSAIE 359 (517)
Q Consensus 338 ~~~~~~~Gd~R~al~ll~~A~~ 359 (517)
+ ...||+|.|++.+...+.
T Consensus 210 ~---~s~gdlr~a~~~Lekl~~ 228 (451)
T PRK06305 210 R---AAQGSLRDAESLYDYVVG 228 (451)
T ss_pred H---HcCCCHHHHHHHHHHHHH
Confidence 7 468999999999987654
No 75
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.73 E-value=5.6e-16 Score=156.88 Aligned_cols=219 Identities=17% Similarity=0.264 Sum_probs=138.3
Q ss_pred hcCcCCCCC---CCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeC
Q 010136 116 ALHVSTAPS---TIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINC 192 (517)
Q Consensus 116 ~l~~~~~p~---~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~ 192 (517)
.|...|.|. +++|++...+.+..++. .+..++++|+||||||||++++++++++.... + ...++++||
T Consensus 4 ~w~~ky~P~~~~~~~g~~~~~~~L~~~~~----~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~----~-~~~~~~i~~ 74 (337)
T PRK12402 4 LWTEKYRPALLEDILGQDEVVERLSRAVD----SPNLPHLLVQGPPGSGKTAAVRALARELYGDP----W-ENNFTEFNV 74 (337)
T ss_pred chHHhhCCCcHHHhcCCHHHHHHHHHHHh----CCCCceEEEECCCCCCHHHHHHHHHHHhcCcc----c-ccceEEech
Confidence 355566664 68899998777777654 34556899999999999999999999886321 1 124788888
Q ss_pred CCCCCHH-HHHHH---HHHHhCCCCCCCCCCCHHHHHHHHHHhh--hccCCCceEEEEEeCcchhcccCchHHHHHhccC
Q 010136 193 TSLTNTS-EIFSK---ILLKLQPRKKLNGSTSPLQYLQNLYSQK--LHSSVMKMMLIIADELDYLITRDRAVLHDLFMLT 266 (517)
Q Consensus 193 ~~~~s~~-~i~~~---i~~~l~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~ 266 (517)
..+.... ..... ....+... ...+......++..+... .........+|||||+|.+....++.|..+++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~ 152 (337)
T PRK12402 75 ADFFDQGKKYLVEDPRFAHFLGTD--KRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQY 152 (337)
T ss_pred hhhhhcchhhhhcCcchhhhhhhh--hhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhc
Confidence 6542110 00000 00000000 000111123333332210 1111234569999999999766666777777643
Q ss_pred CCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCC
Q 010136 267 TFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGD 346 (517)
Q Consensus 267 ~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd 346 (517)
. ....+|.+++. +..+.+.+++| + ..+.|.|++.+++..+|...+.... ..+++++++.+++ ...||
T Consensus 153 ~---~~~~~Il~~~~---~~~~~~~L~sr-~--~~v~~~~~~~~~~~~~l~~~~~~~~-~~~~~~al~~l~~---~~~gd 219 (337)
T PRK12402 153 S---RTCRFIIATRQ---PSKLIPPIRSR-C--LPLFFRAPTDDELVDVLESIAEAEG-VDYDDDGLELIAY---YAGGD 219 (337)
T ss_pred c---CCCeEEEEeCC---hhhCchhhcCC-c--eEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHH---HcCCC
Confidence 2 12334444553 34566788888 5 6899999999999999998876432 3589999999988 45899
Q ss_pred HHHHHHHHHHHH
Q 010136 347 MRKALSVCRSAI 358 (517)
Q Consensus 347 ~R~al~ll~~A~ 358 (517)
+|.+++.++.++
T Consensus 220 lr~l~~~l~~~~ 231 (337)
T PRK12402 220 LRKAILTLQTAA 231 (337)
T ss_pred HHHHHHHHHHHH
Confidence 999998887644
No 76
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=7e-16 Score=161.78 Aligned_cols=195 Identities=21% Similarity=0.253 Sum_probs=131.4
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCeE-EEEcCCCCcHHHHHHHHHHHHHHHHHhc-------------CCCCceEEE
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGSL-YVCGCPGTGKSLSMEKVQHYLVDWAKEA-------------GLQQPEVFS 189 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~l-li~G~pGtGKT~l~~~v~~~l~~~~~~~-------------~~~~~~~v~ 189 (517)
++++|++...+.|..++.. +..++. +|+||||||||++++.+++.+....... ......+++
T Consensus 14 ~dvvGq~~v~~~L~~~i~~----~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~e 89 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQ----GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLE 89 (504)
T ss_pred HHhcChHHHHHHHHHHHHc----CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEE
Confidence 4789999877766666554 455554 9999999999999999999987421100 001123555
Q ss_pred EeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCC
Q 010136 190 INCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFP 269 (517)
Q Consensus 190 vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~ 269 (517)
+++....+... .+.+...+. .......+.||||||+|.+....++.|...++. +
T Consensus 90 l~~~~~~~vd~---------------------iR~l~~~~~--~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEe---p 143 (504)
T PRK14963 90 IDAASNNSVED---------------------VRDLREKVL--LAPLRGGRKVYILDEAHMMSKSAFNALLKTLEE---P 143 (504)
T ss_pred ecccccCCHHH---------------------HHHHHHHHh--hccccCCCeEEEEECccccCHHHHHHHHHHHHh---C
Confidence 55432222111 111211111 111234567999999999865445555444433 3
Q ss_pred CCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHH
Q 010136 270 FSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRK 349 (517)
Q Consensus 270 ~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~ 349 (517)
...+++|.+++. +..+.+.+.|| + ..+.|.+++.+++...|...+.... ..+++++++++++ ...||+|.
T Consensus 144 ~~~t~~Il~t~~---~~kl~~~I~SR-c--~~~~f~~ls~~el~~~L~~i~~~eg-i~i~~~Al~~ia~---~s~GdlR~ 213 (504)
T PRK14963 144 PEHVIFILATTE---PEKMPPTILSR-T--QHFRFRRLTEEEIAGKLRRLLEAEG-REAEPEALQLVAR---LADGAMRD 213 (504)
T ss_pred CCCEEEEEEcCC---hhhCChHHhcc-e--EEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHH---HcCCCHHH
Confidence 456777777774 46677888898 6 6899999999999999998886432 3678999999987 57899999
Q ss_pred HHHHHHHHH
Q 010136 350 ALSVCRSAI 358 (517)
Q Consensus 350 al~ll~~A~ 358 (517)
|++.|+.+.
T Consensus 214 aln~Lekl~ 222 (504)
T PRK14963 214 AESLLERLL 222 (504)
T ss_pred HHHHHHHHH
Confidence 999999875
No 77
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=2.3e-16 Score=168.02 Aligned_cols=220 Identities=17% Similarity=0.168 Sum_probs=139.4
Q ss_pred hcCcCCCC---CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcC-CCCceEEEEe
Q 010136 116 ALHVSTAP---STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAG-LQQPEVFSIN 191 (517)
Q Consensus 116 ~l~~~~~p---~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~-~~~~~~v~vn 191 (517)
.|...|.| ++++|++..++.|..++.. +..+..++|+||+|+|||++++.+++.+.+...... .+. + -.
T Consensus 13 ~la~KyRP~~f~dliGq~~~v~~L~~~~~~---gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~---~-~~ 85 (598)
T PRK09111 13 VLARKYRPQTFDDLIGQEAMVRTLTNAFET---GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPT---I-DL 85 (598)
T ss_pred hHHhhhCCCCHHHhcCcHHHHHHHHHHHHc---CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCc---c-cc
Confidence 34445555 4799999988777776553 233557999999999999999999999875321100 000 0 01
Q ss_pred CCCCCCHHHHHHHHHHHhCCCCC--CCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhcccCchHHHHHhccCCC
Q 010136 192 CTSLTNTSEIFSKILLKLQPRKK--LNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF 268 (517)
Q Consensus 192 ~~~~~s~~~i~~~i~~~l~~~~~--~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~ 268 (517)
|....+ +..+...-..... ...+....+.++.++... .........|+||||+|.|....++.|...++.
T Consensus 86 cg~c~~----C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEe--- 158 (598)
T PRK09111 86 CGVGEH----CQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEE--- 158 (598)
T ss_pred CcccHH----HHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHh---
Confidence 111100 0111111000000 000011134444444321 111234567999999999976666666666654
Q ss_pred CCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHH
Q 010136 269 PFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMR 348 (517)
Q Consensus 269 ~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R 348 (517)
+...++||++++. .+.+.+.++|| | ..+.|.+++.+++..+|...+... ...+++++++++++ ...||+|
T Consensus 159 Pp~~~~fIl~tte---~~kll~tI~SR-c--q~~~f~~l~~~el~~~L~~i~~ke-gi~i~~eAl~lIa~---~a~Gdlr 228 (598)
T PRK09111 159 PPPHVKFIFATTE---IRKVPVTVLSR-C--QRFDLRRIEADVLAAHLSRIAAKE-GVEVEDEALALIAR---AAEGSVR 228 (598)
T ss_pred CCCCeEEEEEeCC---hhhhhHHHHhh-e--eEEEecCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHH---HcCCCHH
Confidence 3456777777774 44577789998 7 799999999999999999887643 24789999999987 5789999
Q ss_pred HHHHHHHHHHH
Q 010136 349 KALSVCRSAIE 359 (517)
Q Consensus 349 ~al~ll~~A~~ 359 (517)
.+++.+..++.
T Consensus 229 ~al~~Ldkli~ 239 (598)
T PRK09111 229 DGLSLLDQAIA 239 (598)
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 78
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=1.6e-16 Score=169.95 Aligned_cols=197 Identities=20% Similarity=0.211 Sum_probs=138.8
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCe-EEEEcCCCCcHHHHHHHHHHHHHHHHHhcCC--------------CCceEE
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGS-LYVCGCPGTGKSLSMEKVQHYLVDWAKEAGL--------------QQPEVF 188 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~-lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~--------------~~~~~v 188 (517)
++++|.+...+.|..++. .+...+ ++|+||+|+|||++++.+++.+.+.....+. ..+.++
T Consensus 16 ~~iiGq~~v~~~L~~~i~----~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~ 91 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAID----TGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVF 91 (576)
T ss_pred HHccCcHHHHHHHHHHHH----cCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCee
Confidence 579999987766666654 345454 6799999999999999999998642110000 012344
Q ss_pred EEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHh-hhccCCCceEEEEEeCcchhcccCchHHHHHhccCC
Q 010136 189 SINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQ-KLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTT 267 (517)
Q Consensus 189 ~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~ 267 (517)
++++...... +.++.+... ..........|+||||+|.|....++.|...++.+
T Consensus 92 eid~~s~~~v------------------------~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEep- 146 (576)
T PRK14965 92 EIDGASNTGV------------------------DDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEP- 146 (576)
T ss_pred eeeccCccCH------------------------HHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcC-
Confidence 4444332222 223332221 01122345679999999999877778888888763
Q ss_pred CCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCH
Q 010136 268 FPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDM 347 (517)
Q Consensus 268 ~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~ 347 (517)
...++||++++. +..+.+.++|| | ..+.|.+++.+++...|...+... ...++++++..+++ ...||+
T Consensus 147 --p~~~~fIl~t~~---~~kl~~tI~SR-c--~~~~f~~l~~~~i~~~L~~i~~~e-gi~i~~~al~~la~---~a~G~l 214 (576)
T PRK14965 147 --PPHVKFIFATTE---PHKVPITILSR-C--QRFDFRRIPLQKIVDRLRYIADQE-GISISDAALALVAR---KGDGSM 214 (576)
T ss_pred --CCCeEEEEEeCC---hhhhhHHHHHh-h--hhhhcCCCCHHHHHHHHHHHHHHh-CCCCCHHHHHHHHH---HcCCCH
Confidence 457778887874 56788899999 7 689999999999999999887643 23689999999988 578999
Q ss_pred HHHHHHHHHHHHHH
Q 010136 348 RKALSVCRSAIEIL 361 (517)
Q Consensus 348 R~al~ll~~A~~~a 361 (517)
|.|++++..++.+.
T Consensus 215 r~al~~Ldqliay~ 228 (576)
T PRK14965 215 RDSLSTLDQVLAFC 228 (576)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998877543
No 79
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=6.3e-17 Score=171.42 Aligned_cols=227 Identities=15% Similarity=0.163 Sum_probs=160.3
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHhh--------ccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeC
Q 010136 121 TAPSTIVCREDEQKKVLEFCKKNL--------EEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINC 192 (517)
Q Consensus 121 ~~p~~l~gRe~e~~~l~~~L~~~l--------~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~ 192 (517)
....++.|.++..++|.+++.-.- .-..+.+++|+||||||||.+|+++|.+-+ ++|+.+++
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg----------VPF~svSG 377 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG----------VPFFSVSG 377 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC----------Cceeeech
Confidence 345688999887777777754321 122378999999999999999999987643 67999999
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCc------------hHHH
Q 010136 193 TSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDR------------AVLH 260 (517)
Q Consensus 193 ~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~------------~~L~ 260 (517)
+++..... +.. ...++.+|. .++...|+||||||||.+...+. ..|.
T Consensus 378 SEFvE~~~-----------------g~~-asrvr~lf~---~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tln 436 (774)
T KOG0731|consen 378 SEFVEMFV-----------------GVG-ASRVRDLFP---LARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLN 436 (774)
T ss_pred HHHHHHhc-----------------ccc-hHHHHHHHH---HhhccCCeEEEecccccccccccccccCCCChHHHHHHH
Confidence 87632221 111 456788887 45678899999999999876531 2355
Q ss_pred HHhccC--CCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHH
Q 010136 261 DLFMLT--TFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCAR 338 (517)
Q Consensus 261 ~l~~~~--~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~ 338 (517)
+|+-.. ......+++++.||. ++-+++++.+.....+.|....++..+..+|+...+.+.... .++..+..+|.
T Consensus 437 Qll~emDgf~~~~~vi~~a~tnr---~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~~a~ 512 (774)
T KOG0731|consen 437 QLLVEMDGFETSKGVIVLAATNR---PDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSKLAS 512 (774)
T ss_pred HHHHHhcCCcCCCcEEEEeccCC---ccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHHHHh
Confidence 554331 223467999999995 566788888764456799999999999999999998865221 12323333444
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccC
Q 010136 339 KVAAASGDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKS 412 (517)
Q Consensus 339 ~~~~~~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~ 412 (517)
.+...+|+ ...++|..|.-+|.+++.. .|+..|+..|++.+...
T Consensus 513 ~t~gf~ga--dl~n~~neaa~~a~r~~~~----------------------------~i~~~~~~~a~~Rvi~G 556 (774)
T KOG0731|consen 513 LTPGFSGA--DLANLCNEAALLAARKGLR----------------------------EIGTKDLEYAIERVIAG 556 (774)
T ss_pred cCCCCcHH--HHHhhhhHHHHHHHHhccC----------------------------ccchhhHHHHHHHHhcc
Confidence 33333332 3448999999888888776 89999999999965544
No 80
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=3.2e-16 Score=163.80 Aligned_cols=204 Identities=22% Similarity=0.253 Sum_probs=134.2
Q ss_pred cCcCCCC---CCCCCcHHHHHHHHHHHHHhhccCCCCe-EEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCC---------
Q 010136 117 LHVSTAP---STIVCREDEQKKVLEFCKKNLEEEKAGS-LYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQ--------- 183 (517)
Q Consensus 117 l~~~~~p---~~l~gRe~e~~~l~~~L~~~l~~~~~~~-lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~--------- 183 (517)
|...|.| ++++|++.....|..++ ..+...+ ++|+||+|+|||++++.+++.+.+.....+.+
T Consensus 6 ~~~kyRP~~f~diiGq~~i~~~L~~~i----~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~ 81 (486)
T PRK14953 6 FARKYRPKFFKEVIGQEIVVRILKNAV----KLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVE 81 (486)
T ss_pred HHHhhCCCcHHHccChHHHHHHHHHHH----HcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHH
Confidence 3334444 46899998776665554 4445555 56899999999999999999886421111000
Q ss_pred -----CceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchH
Q 010136 184 -----QPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAV 258 (517)
Q Consensus 184 -----~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~ 258 (517)
...++++++........ .+.+...+. .....+...|+||||+|.|....++.
T Consensus 82 i~~g~~~d~~eidaas~~gvd~---------------------ir~I~~~~~--~~P~~~~~KVvIIDEad~Lt~~a~na 138 (486)
T PRK14953 82 IDKGSFPDLIEIDAASNRGIDD---------------------IRALRDAVS--YTPIKGKYKVYIIDEAHMLTKEAFNA 138 (486)
T ss_pred HhcCCCCcEEEEeCccCCCHHH---------------------HHHHHHHHH--hCcccCCeeEEEEEChhhcCHHHHHH
Confidence 01233333322111111 122222222 12224566799999999997666666
Q ss_pred HHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHH
Q 010136 259 LHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCAR 338 (517)
Q Consensus 259 L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~ 338 (517)
|...++.+ ...+++|.+++. .+.+.+.+.+| + ..+.|.|++.+++..+|..++.... ..+++++++++++
T Consensus 139 LLk~LEep---p~~~v~Il~tt~---~~kl~~tI~SR-c--~~i~f~~ls~~el~~~L~~i~k~eg-i~id~~al~~La~ 208 (486)
T PRK14953 139 LLKTLEEP---PPRTIFILCTTE---YDKIPPTILSR-C--QRFIFSKPTKEQIKEYLKRICNEEK-IEYEEKALDLLAQ 208 (486)
T ss_pred HHHHHhcC---CCCeEEEEEECC---HHHHHHHHHHh-c--eEEEcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHH
Confidence 66666543 345566666663 45577788888 6 6899999999999999998887432 3778999999987
Q ss_pred HHHHHhCCHHHHHHHHHHHHHH
Q 010136 339 KVAAASGDMRKALSVCRSAIEI 360 (517)
Q Consensus 339 ~~~~~~Gd~R~al~ll~~A~~~ 360 (517)
.+.||+|.|+++++.+...
T Consensus 209 ---~s~G~lr~al~~Ldkl~~~ 227 (486)
T PRK14953 209 ---ASEGGMRDAASLLDQASTY 227 (486)
T ss_pred ---HcCCCHHHHHHHHHHHHHh
Confidence 4779999999999988743
No 81
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.72 E-value=6e-16 Score=160.81 Aligned_cols=177 Identities=15% Similarity=0.204 Sum_probs=115.1
Q ss_pred CCCCCcHHHHHHHHHHHHHhhc---------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCC
Q 010136 124 STIVCREDEQKKVLEFCKKNLE---------EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTS 194 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~---------~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~ 194 (517)
+++.|.+++++++.+.+...+. -..+.+++||||||||||++++++++++.............++.+.+..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e 261 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE 261 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh
Confidence 5788999999999998753221 1246789999999999999999999988642111000011233333322
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhh-ccCCCceEEEEEeCcchhcccCc---------hHHHHHhc
Q 010136 195 LTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKL-HSSVMKMMLIIADELDYLITRDR---------AVLHDLFM 264 (517)
Q Consensus 195 ~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~vI~iDEiD~L~~~~~---------~~L~~l~~ 264 (517)
+.+.+. +. ....++.+|.... ......++||||||+|.+...+. ..+..|+.
T Consensus 262 Ll~kyv-----------------Ge-te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~ 323 (512)
T TIGR03689 262 LLNKYV-----------------GE-TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLS 323 (512)
T ss_pred hccccc-----------------ch-HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHH
Confidence 211110 11 2445555555321 12245689999999999975421 23445554
Q ss_pred cCC--CCCCcEEEEEEECCCCcchhhcccccccC-CCceEEEeCCCCHHHHHHHHHHHHhh
Q 010136 265 LTT--FPFSRFILIGIANAIDLADRFLPRLQSMN-CKPLVVTFRAYSKDQIIRILQERLME 322 (517)
Q Consensus 265 ~~~--~~~~~v~lI~ian~~~~~~~l~~~l~sr~-~~~~~i~f~p~~~~e~~~IL~~rl~~ 322 (517)
+.. ....+++||++|| .++.++|++.+.. | ...|.|++++.++..+|+..++..
T Consensus 324 ~LDgl~~~~~ViVI~ATN---~~d~LDpALlRpGRf-D~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 324 ELDGVESLDNVIVIGASN---REDMIDPAILRPGRL-DVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred HhcccccCCceEEEeccC---ChhhCCHhhcCcccc-ceEEEeCCCCHHHHHHHHHHHhhc
Confidence 421 1235799999999 4777899998731 5 458999999999999999988763
No 82
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.72 E-value=4.5e-16 Score=158.76 Aligned_cols=197 Identities=22% Similarity=0.252 Sum_probs=134.7
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcC--------------CCCceEEE
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAG--------------LQQPEVFS 189 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~--------------~~~~~~v~ 189 (517)
++++|+++.++.+..++.. +..+..++|+||||+|||++++.+++.+........ ...+.+++
T Consensus 14 ~~iig~~~~~~~l~~~~~~---~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~ 90 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKN---GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIE 90 (355)
T ss_pred hhccCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEE
Confidence 4789999998888877653 223456789999999999999999999864210000 01134555
Q ss_pred EeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhcccCchHHHHHhccCCC
Q 010136 190 INCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF 268 (517)
Q Consensus 190 vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~ 268 (517)
+++....+.. .++.++... .........||+|||+|.+....++.|...++.
T Consensus 91 ~~~~~~~~~~------------------------~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~--- 143 (355)
T TIGR02397 91 IDAASNNGVD------------------------DIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEE--- 143 (355)
T ss_pred eeccccCCHH------------------------HHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhC---
Confidence 5554322222 122222210 011123456999999999976556666666554
Q ss_pred CCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHH
Q 010136 269 PFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMR 348 (517)
Q Consensus 269 ~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R 348 (517)
+...+++|++++. +..+.+.+++| + ..+.|++++.+++.+++..++.... ..+++++++.+++ ...||+|
T Consensus 144 ~~~~~~lIl~~~~---~~~l~~~l~sr-~--~~~~~~~~~~~~l~~~l~~~~~~~g-~~i~~~a~~~l~~---~~~g~~~ 213 (355)
T TIGR02397 144 PPEHVVFILATTE---PHKIPATILSR-C--QRFDFKRIPLEDIVERLKKILDKEG-IKIEDEALELIAR---AADGSLR 213 (355)
T ss_pred CccceeEEEEeCC---HHHHHHHHHhh-e--eEEEcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHH---HcCCChH
Confidence 3346777777774 45677888898 6 6899999999999999999887432 3688999999887 4689999
Q ss_pred HHHHHHHHHHHH
Q 010136 349 KALSVCRSAIEI 360 (517)
Q Consensus 349 ~al~ll~~A~~~ 360 (517)
.|++.+..+...
T Consensus 214 ~a~~~lekl~~~ 225 (355)
T TIGR02397 214 DALSLLDQLISF 225 (355)
T ss_pred HHHHHHHHHHhh
Confidence 999999887754
No 83
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.72 E-value=1.2e-15 Score=159.95 Aligned_cols=213 Identities=15% Similarity=0.203 Sum_probs=138.8
Q ss_pred cCcCCCCCCCC-CcHHHHHHHHHHHHHhhcc--CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCC
Q 010136 117 LHVSTAPSTIV-CREDEQKKVLEFCKKNLEE--EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCT 193 (517)
Q Consensus 117 l~~~~~p~~l~-gRe~e~~~l~~~L~~~l~~--~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~ 193 (517)
|++.+.+++++ |..... ....+...... ...+.++|+||||+|||++++++++++.... +...++|+++.
T Consensus 115 l~~~~tfd~fv~g~~n~~--a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~-----~~~~v~yi~~~ 187 (450)
T PRK00149 115 LNPKYTFDNFVVGKSNRL--AHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKN-----PNAKVVYVTSE 187 (450)
T ss_pred CCCCCcccccccCCCcHH--HHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhC-----CCCeEEEEEHH
Confidence 55566666644 433332 23333333322 2345799999999999999999999987531 12468899986
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC--chHHHHHhccCCCCCC
Q 010136 194 SLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD--RAVLHDLFMLTTFPFS 271 (517)
Q Consensus 194 ~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~--~~~L~~l~~~~~~~~~ 271 (517)
.+ ...+...+.. .....+.+.+. ...+|+|||+|.+..+. ++.|+.+++.....+.
T Consensus 188 ~~------~~~~~~~~~~--------~~~~~~~~~~~--------~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~ 245 (450)
T PRK00149 188 KF------TNDFVNALRN--------NTMEEFKEKYR--------SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGK 245 (450)
T ss_pred HH------HHHHHHHHHc--------CcHHHHHHHHh--------cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCC
Confidence 54 2233333311 11233333332 34699999999997653 4567776665332332
Q ss_pred cEEEEEEECC-CCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHH
Q 010136 272 RFILIGIANA-IDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKA 350 (517)
Q Consensus 272 ~v~lI~ian~-~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~a 350 (517)
.++|+ +|. ......+++++.||......+.|.+|+.+++.+||+.++... ...++++++++||+ ...||+|.+
T Consensus 246 -~iiit-s~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~-~~~l~~e~l~~ia~---~~~~~~R~l 319 (450)
T PRK00149 246 -QIVLT-SDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEE-GIDLPDEVLEFIAK---NITSNVREL 319 (450)
T ss_pred -cEEEE-CCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHc---CcCCCHHHH
Confidence 34443 443 222333778999994344689999999999999999988742 34789999999998 578999998
Q ss_pred HHHHHHHHHHHHHH
Q 010136 351 LSVCRSAIEILEAE 364 (517)
Q Consensus 351 l~ll~~A~~~a~~~ 364 (517)
..++......+...
T Consensus 320 ~~~l~~l~~~~~~~ 333 (450)
T PRK00149 320 EGALNRLIAYASLT 333 (450)
T ss_pred HHHHHHHHHHHHhh
Confidence 88888776665544
No 84
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=4.9e-17 Score=162.81 Aligned_cols=253 Identities=18% Similarity=0.185 Sum_probs=178.8
Q ss_pred hhhhccCCCCCCCChhHHHHHHhhcCcCCCCCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHH
Q 010136 93 CDSFKSKPNWNPQDVEQMSAVREALHVSTAPSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~ 172 (517)
.+.+...+.+.|+|+..+..++..+.+..+. .+.|-+.+.. + .....++++.||||+|||++++++|.+
T Consensus 141 ~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~--p~lr~d~F~g--------l-r~p~rglLLfGPpgtGKtmL~~aiAsE 209 (428)
T KOG0740|consen 141 NEIGDTLRNVGWDDIAGLEDAKQSLKEAVIL--PLLRPDLFLG--------L-REPVRGLLLFGPPGTGKTMLAKAIATE 209 (428)
T ss_pred HHHhccCCcccccCCcchhhHHHHhhhhhhh--cccchHhhhc--------c-ccccchhheecCCCCchHHHHHHHHhh
Confidence 4445666778888888887788777766542 2233332111 1 234668999999999999999999998
Q ss_pred HHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhc
Q 010136 173 LVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLI 252 (517)
Q Consensus 173 l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~ 252 (517)
.. ..|+.|++.++.+.+- |.. ...++.+|. .++...|.||||||+|.+.
T Consensus 210 ~~----------atff~iSassLtsK~~-----------------Ge~-eK~vralf~---vAr~~qPsvifidEidsll 258 (428)
T KOG0740|consen 210 SG----------ATFFNISASSLTSKYV-----------------GES-EKLVRALFK---VARSLQPSVIFIDEIDSLL 258 (428)
T ss_pred hc----------ceEeeccHHHhhhhcc-----------------ChH-HHHHHHHHH---HHHhcCCeEEEechhHHHH
Confidence 76 3789999988877664 444 677788886 5567889999999999998
Q ss_pred ccCc------------hHHHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHH
Q 010136 253 TRDR------------AVLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERL 320 (517)
Q Consensus 253 ~~~~------------~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl 320 (517)
..+. +.|.++.-....+..+|.|||+|| .++.++..+++| |. .+++++.++.+....++...+
T Consensus 259 s~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN---~P~e~Dea~~Rr-f~-kr~yiplPd~etr~~~~~~ll 333 (428)
T KOG0740|consen 259 SKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATN---RPWELDEAARRR-FV-KRLYIPLPDYETRSLLWKQLL 333 (428)
T ss_pred hhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCC---CchHHHHHHHHH-hh-ceeeecCCCHHHHHHHHHHHH
Confidence 6531 233333333455667999999999 799999999998 64 488899999999999999888
Q ss_pred hhhccCCCChhHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHhh--hhccccccccccchhhhhhhhhhccCccc
Q 010136 321 MELSYIVFQPQALELCARKVAAASG-DMRKALSVCRSAIEILEAEMRES--VSKMNSASAEQGLFDQQAASAFEFFNSQV 397 (517)
Q Consensus 321 ~~~~~~~~~~~ai~~ia~~~~~~~G-d~R~al~ll~~A~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 397 (517)
..- ...+.+..++.+++...+++| |+. ++|+.|...=.++.... .+.. ..+ ....|
T Consensus 334 ~~~-~~~l~~~d~~~l~~~Tegysgsdi~---~l~kea~~~p~r~~~~~~~~~~~---~~~--------------~~r~i 392 (428)
T KOG0740|consen 334 KEQ-PNGLSDLDISLLAKVTEGYSGSDIT---ALCKEAAMGPLRELGGTTDLEFI---DAD--------------KIRPI 392 (428)
T ss_pred HhC-CCCccHHHHHHHHHHhcCcccccHH---HHHHHhhcCchhhcccchhhhhc---chh--------------ccCCC
Confidence 754 567888899999998888776 554 68888764322222110 0000 000 01268
Q ss_pred cHHHHHHHHHHhccCh
Q 010136 398 RVDHMAVALSNTFKSP 413 (517)
Q Consensus 398 t~~~v~~a~~~~~~~~ 413 (517)
+..|+..++..+..+.
T Consensus 393 ~~~df~~a~~~i~~~~ 408 (428)
T KOG0740|consen 393 TYPDFKNAFKNIKPSV 408 (428)
T ss_pred CcchHHHHHHhhcccc
Confidence 8899999998887764
No 85
>PRK08727 hypothetical protein; Validated
Probab=99.71 E-value=2e-16 Score=150.96 Aligned_cols=190 Identities=16% Similarity=0.155 Sum_probs=128.7
Q ss_pred cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHH
Q 010136 146 EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYL 225 (517)
Q Consensus 146 ~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l 225 (517)
+.....++|+|++|||||+++.+++.++.+. + ..++|++..... ..+
T Consensus 38 ~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~----~---~~~~y~~~~~~~--------------------------~~~ 84 (233)
T PRK08727 38 GQSSDWLYLSGPAGTGKTHLALALCAAAEQA----G---RSSAYLPLQAAA--------------------------GRL 84 (233)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHHHHc----C---CcEEEEeHHHhh--------------------------hhH
Confidence 3345679999999999999999999887542 2 356777753311 011
Q ss_pred HHHHHhhhccCCCceEEEEEeCcchhcccC--chHHHHHhccCCCCCCcEEEEEEECCC-CcchhhcccccccCCCceEE
Q 010136 226 QNLYSQKLHSSVMKMMLIIADELDYLITRD--RAVLHDLFMLTTFPFSRFILIGIANAI-DLADRFLPRLQSMNCKPLVV 302 (517)
Q Consensus 226 ~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~--~~~L~~l~~~~~~~~~~v~lI~ian~~-~~~~~l~~~l~sr~~~~~~i 302 (517)
...+. ......+|+|||+|.+.... +..|+.+++..... ...+|.++|.. .....++++++||......+
T Consensus 85 ~~~~~-----~l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~--~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~ 157 (233)
T PRK08727 85 RDALE-----ALEGRSLVALDGLESIAGQREDEVALFDFHNRARAA--GITLLYTARQMPDGLALVLPDLRSRLAQCIRI 157 (233)
T ss_pred HHHHH-----HHhcCCEEEEeCcccccCChHHHHHHHHHHHHHHHc--CCeEEEECCCChhhhhhhhHHHHHHHhcCceE
Confidence 11222 11233589999999987543 35666776653222 23355556642 22223478999983334689
Q ss_pred EeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccch
Q 010136 303 TFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLF 382 (517)
Q Consensus 303 ~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~ 382 (517)
.|++|+.+++.+||+.+.... .-.+++++++++++. ..||+|.+++++......+...++
T Consensus 158 ~l~~~~~e~~~~iL~~~a~~~-~l~l~~e~~~~La~~---~~rd~r~~l~~L~~l~~~~~~~~~---------------- 217 (233)
T PRK08727 158 GLPVLDDVARAAVLRERAQRR-GLALDEAAIDWLLTH---GERELAGLVALLDRLDRESLAAKR---------------- 217 (233)
T ss_pred EecCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHhCC----------------
Confidence 999999999999999876532 247899999999984 679999999999877654443321
Q ss_pred hhhhhhhhhccCccccHHHHHHHHHH
Q 010136 383 DQQAASAFEFFNSQVRVDHMAVALSN 408 (517)
Q Consensus 383 ~~~~~~~~~~~~~~Vt~~~v~~a~~~ 408 (517)
.||.+.+.+++..
T Consensus 218 -------------~it~~~~~~~l~~ 230 (233)
T PRK08727 218 -------------RVTVPFLRRVLEE 230 (233)
T ss_pred -------------CCCHHHHHHHHhh
Confidence 5899988888754
No 86
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.70 E-value=1.1e-15 Score=158.17 Aligned_cols=213 Identities=14% Similarity=0.187 Sum_probs=138.6
Q ss_pred cCcCCCCCC-CCCcHHHHHHHHHHHHHhhcc--CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCC
Q 010136 117 LHVSTAPST-IVCREDEQKKVLEFCKKNLEE--EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCT 193 (517)
Q Consensus 117 l~~~~~p~~-l~gRe~e~~~l~~~L~~~l~~--~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~ 193 (517)
|++.+.+++ ++|.+..+ ....+...... ...+.++|+|++|+|||++++++++++.... +...++|+++.
T Consensus 103 l~~~~tfd~fi~g~~n~~--a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~-----~~~~v~yi~~~ 175 (405)
T TIGR00362 103 LNPKYTFDNFVVGKSNRL--AHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENN-----PNAKVVYVSSE 175 (405)
T ss_pred CCCCCcccccccCCcHHH--HHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhC-----CCCcEEEEEHH
Confidence 556677776 44655443 33333333332 2245789999999999999999999986531 12468899875
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhccc--CchHHHHHhccCCCCCC
Q 010136 194 SLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITR--DRAVLHDLFMLTTFPFS 271 (517)
Q Consensus 194 ~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~--~~~~L~~l~~~~~~~~~ 271 (517)
.+ ...+...+... ....+.+.+. ..-+|+|||+|.+... .++.|+.+++.....+.
T Consensus 176 ~~------~~~~~~~~~~~--------~~~~~~~~~~--------~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~ 233 (405)
T TIGR00362 176 KF------TNDFVNALRNN--------KMEEFKEKYR--------SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGK 233 (405)
T ss_pred HH------HHHHHHHHHcC--------CHHHHHHHHH--------hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCC
Confidence 43 33344444211 1333433333 2358999999999765 24567777665322233
Q ss_pred cEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHH
Q 010136 272 RFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKAL 351 (517)
Q Consensus 272 ~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al 351 (517)
. ++|++.........+++++.||......+.|.+|+.+++.+||+.++... ...++++++++||+ ...||+|.+.
T Consensus 234 ~-iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~-~~~l~~e~l~~ia~---~~~~~~r~l~ 308 (405)
T TIGR00362 234 Q-IVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEE-GLELPDEVLEFIAK---NIRSNVRELE 308 (405)
T ss_pred C-EEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHH---hcCCCHHHHH
Confidence 3 34443333333444678999994334589999999999999999998753 34789999999998 5788999877
Q ss_pred HHHHHHHHHHHH
Q 010136 352 SVCRSAIEILEA 363 (517)
Q Consensus 352 ~ll~~A~~~a~~ 363 (517)
.++......|..
T Consensus 309 ~~l~~l~~~a~~ 320 (405)
T TIGR00362 309 GALNRLLAYASL 320 (405)
T ss_pred HHHHHHHHHHHH
Confidence 777766655544
No 87
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.70 E-value=3.6e-16 Score=173.82 Aligned_cols=213 Identities=14% Similarity=0.163 Sum_probs=143.6
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFS 203 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~ 203 (517)
+.++||++++.++...|.. ...++++|+||||||||++++.+++.+........+....++.++...+......
T Consensus 187 d~~iGr~~ei~~~i~~l~r----~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~-- 260 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLR----RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASV-- 260 (852)
T ss_pred CcccCCHHHHHHHHHHHhc----CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhccccc--
Confidence 4789999998888877644 4567899999999999999999999886421100111234555554433111000
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhccc----CchHHHHHhccCCCCCCcEEEEEEE
Q 010136 204 KILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITR----DRAVLHDLFMLTTFPFSRFILIGIA 279 (517)
Q Consensus 204 ~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~----~~~~L~~l~~~~~~~~~~v~lI~ia 279 (517)
.....+.++.+|.... ....++||||||+|.|... .+....+++. +......+.+||+|
T Consensus 261 --------------~ge~e~~lk~ii~e~~--~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lk-p~l~~G~l~~IgaT 323 (852)
T TIGR03345 261 --------------KGEFENRLKSVIDEVK--ASPQPIILFIDEAHTLIGAGGQAGQGDAANLLK-PALARGELRTIAAT 323 (852)
T ss_pred --------------chHHHHHHHHHHHHHH--hcCCCeEEEEeChHHhccCCCccccccHHHHhh-HHhhCCCeEEEEec
Confidence 1112456666666321 2346789999999999752 1222223332 23456789999988
Q ss_pred CCCCcc--hhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHh---hhccCCCChhHHHHHHHHHHHHhCC---HHHHH
Q 010136 280 NAIDLA--DRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLM---ELSYIVFQPQALELCARKVAAASGD---MRKAL 351 (517)
Q Consensus 280 n~~~~~--~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~---~~~~~~~~~~ai~~ia~~~~~~~Gd---~R~al 351 (517)
+..++. -..++.+.+| | +.|.+++++.++...||+.... ......++++++..+++...++-+| +.+||
T Consensus 324 T~~e~~~~~~~d~AL~rR-f--~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAI 400 (852)
T TIGR03345 324 TWAEYKKYFEKDPALTRR-F--QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAV 400 (852)
T ss_pred CHHHHhhhhhccHHHHHh-C--eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHH
Confidence 854332 2358999998 7 6899999999999999754443 2233578999999999877776665 78999
Q ss_pred HHHHHHHHHHH
Q 010136 352 SVCRSAIEILE 362 (517)
Q Consensus 352 ~ll~~A~~~a~ 362 (517)
++++.|+..+.
T Consensus 401 dlldea~a~~~ 411 (852)
T TIGR03345 401 SLLDTACARVA 411 (852)
T ss_pred HHHHHHHHHHH
Confidence 99999875443
No 88
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.70 E-value=1.3e-15 Score=149.13 Aligned_cols=235 Identities=12% Similarity=0.151 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhC
Q 010136 131 DEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQ 210 (517)
Q Consensus 131 ~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~ 210 (517)
...+++...+...+. ...+.++|+|++|+|||++++.+++.+... . +.++++. ....+...++..|+..++
T Consensus 26 ~~~~~~~~~l~~~~~-~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~----~---~~~~~~~-~~~~~~~~~l~~i~~~lG 96 (269)
T TIGR03015 26 KGHKRAMAYLEYGLS-QREGFILITGEVGAGKTTLIRNLLKRLDQE----R---VVAAKLV-NTRVDAEDLLRMVAADFG 96 (269)
T ss_pred HHHHHHHHHHHHHHh-cCCCEEEEEcCCCCCHHHHHHHHHHhcCCC----C---eEEeeee-CCCCCHHHHHHHHHHHcC
Confidence 334455556555443 345679999999999999999998876421 1 1222221 123467788888988886
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCCCcchhhc-
Q 010136 211 PRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAIDLADRFL- 289 (517)
Q Consensus 211 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~- 289 (517)
..............+...+... ...+++.+|+|||+|.+.....+.|..+.+........+.++. +...++.+.+.
T Consensus 97 ~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl-~g~~~~~~~l~~ 173 (269)
T TIGR03015 97 LETEGRDKAALLRELEDFLIEQ--FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFL-VGQPEFRETLQS 173 (269)
T ss_pred CCCCCCCHHHHHHHHHHHHHHH--HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEE-cCCHHHHHHHcC
Confidence 5432111111122333333211 1245668999999999976555667666665432333344444 33333433332
Q ss_pred ---ccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhc---cCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 010136 290 ---PRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELS---YIVFQPQALELCARKVAAASGDMRKALSVCRSAIEILEA 363 (517)
Q Consensus 290 ---~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~---~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~~a~~ 363 (517)
..+.+| + ...+.++|++.+|+.+++..++.... ...|++++++.+++ .+.|++|....+|..|+..|..
T Consensus 174 ~~~~~l~~r-~-~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~---~s~G~p~~i~~l~~~~~~~a~~ 248 (269)
T TIGR03015 174 PQLQQLRQR-I-IASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHR---FSRGIPRLINILCDRLLLSAFL 248 (269)
T ss_pred chhHHHHhh-e-eeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHH---HcCCcccHHHHHHHHHHHHHHH
Confidence 235555 3 35889999999999999999987432 23689999999877 5788999998999999988877
Q ss_pred HHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhc
Q 010136 364 EMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTF 410 (517)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~ 410 (517)
.+.. .|+.++|..++..+.
T Consensus 249 ~~~~----------------------------~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 249 EEKR----------------------------EIGGEEVREVIAEID 267 (269)
T ss_pred cCCC----------------------------CCCHHHHHHHHHHhh
Confidence 6554 799999999998764
No 89
>CHL00181 cbbX CbbX; Provisional
Probab=99.70 E-value=5.3e-16 Score=151.99 Aligned_cols=215 Identities=16% Similarity=0.183 Sum_probs=134.6
Q ss_pred HHHHHhhcCcCCCCCCCCCcHHHHHHHHHHHHHh----h-c------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHH
Q 010136 110 MSAVREALHVSTAPSTIVCREDEQKKVLEFCKKN----L-E------EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAK 178 (517)
Q Consensus 110 ~~~~~~~l~~~~~p~~l~gRe~e~~~l~~~L~~~----l-~------~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~ 178 (517)
+....+.|+. .++|.++..++|.+++... + . ...+.+++|+||||||||++|+.+++.+....
T Consensus 14 ~~~~~~~l~~-----~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g- 87 (287)
T CHL00181 14 IQEVLDILDE-----ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLG- 87 (287)
T ss_pred HHHHHHHHHH-----hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcC-
Confidence 4444444443 3688887777666553211 1 0 11345799999999999999999999876421
Q ss_pred hcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhccc----
Q 010136 179 EAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITR---- 254 (517)
Q Consensus 179 ~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~---- 254 (517)
-.+.-.++++++..+ ...+. +.. .......|.. ....||||||+|.|...
T Consensus 88 --~~~~~~~~~v~~~~l----------~~~~~-------g~~-~~~~~~~l~~------a~ggVLfIDE~~~l~~~~~~~ 141 (287)
T CHL00181 88 --YIKKGHLLTVTRDDL----------VGQYI-------GHT-APKTKEVLKK------AMGGVLFIDEAYYLYKPDNER 141 (287)
T ss_pred --CCCCCceEEecHHHH----------HHHHh-------ccc-hHHHHHHHHH------ccCCEEEEEccchhccCCCcc
Confidence 111124777775432 11121 221 2334555652 12359999999998432
Q ss_pred --CchHHHHHhccCCCCCCcEEEEEEECCCCcch---hhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCC
Q 010136 255 --DRAVLHDLFMLTTFPFSRFILIGIANAIDLAD---RFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQ 329 (517)
Q Consensus 255 --~~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~---~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~ 329 (517)
..+++..|+.+.......++||++++. +..+ .++|.+.+| | ...|.|++|+.+|+.+|+...+.... ..++
T Consensus 142 ~~~~e~~~~L~~~me~~~~~~~vI~ag~~-~~~~~~~~~np~L~sR-~-~~~i~F~~~t~~el~~I~~~~l~~~~-~~l~ 217 (287)
T CHL00181 142 DYGSEAIEILLQVMENQRDDLVVIFAGYK-DRMDKFYESNPGLSSR-I-ANHVDFPDYTPEELLQIAKIMLEEQQ-YQLT 217 (287)
T ss_pred chHHHHHHHHHHHHhcCCCCEEEEEeCCc-HHHHHHHhcCHHHHHh-C-CceEEcCCcCHHHHHHHHHHHHHHhc-CCCC
Confidence 124444444443333456778876543 2222 235889998 6 45999999999999999998887542 3677
Q ss_pred hhHHHHHHHHHHH-----HhCCHHHHHHHHHHHHHH
Q 010136 330 PQALELCARKVAA-----ASGDMRKALSVCRSAIEI 360 (517)
Q Consensus 330 ~~ai~~ia~~~~~-----~~Gd~R~al~ll~~A~~~ 360 (517)
+++.+.+...+.. ..|++|.+.++++.|+..
T Consensus 218 ~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~ 253 (287)
T CHL00181 218 PEAEKALLDYIKKRMEQPLFANARSVRNALDRARMR 253 (287)
T ss_pred hhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHH
Confidence 8877777665543 337799998888887754
No 90
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.70 E-value=3.9e-16 Score=165.64 Aligned_cols=237 Identities=17% Similarity=0.182 Sum_probs=153.5
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCC-CHHHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLT-NTSEIF 202 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~-s~~~i~ 202 (517)
++++|++..++.+...+ ....+.+++|+||||||||++|+.+.+...............|+.++|.... +...+-
T Consensus 65 ~~iiGqs~~i~~l~~al----~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~ 140 (531)
T TIGR02902 65 DEIIGQEEGIKALKAAL----CGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIA 140 (531)
T ss_pred HHeeCcHHHHHHHHHHH----hCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccc
Confidence 46899999888777553 3456789999999999999999999876543211100011368999987532 111111
Q ss_pred HHHHHHhCCCC-CC--CCCCCH-HHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCC-----------
Q 010136 203 SKILLKLQPRK-KL--NGSTSP-LQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTT----------- 267 (517)
Q Consensus 203 ~~i~~~l~~~~-~~--~~~~~~-~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~----------- 267 (517)
..++....... .. ..+... .+.-...+. .....+|||||+|.|....|+.|..+++...
T Consensus 141 ~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~------~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~ 214 (531)
T TIGR02902 141 DPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVT------RAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSE 214 (531)
T ss_pred hhhcCCcccchhccccccccCCcccccCchhh------ccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeecccccccc
Confidence 11111100000 00 000000 000000111 2234699999999998888887777664310
Q ss_pred --------------CCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHH
Q 010136 268 --------------FPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQAL 333 (517)
Q Consensus 268 --------------~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai 333 (517)
.....+.+|++|+. .++.+.+.+++| | ..+.|+||+.+++.+|++..++... ..++++++
T Consensus 215 ~~~~~~~~~~~~~~~~~~d~rlI~ATt~--~p~~L~paLrsR-~--~~I~f~pL~~eei~~Il~~~a~k~~-i~is~~al 288 (531)
T TIGR02902 215 NPNIPSHIHDIFQNGLPADFRLIGATTR--NPEEIPPALRSR-C--VEIFFRPLLDEEIKEIAKNAAEKIG-INLEKHAL 288 (531)
T ss_pred CcccccchhhhcccCcccceEEEEEecC--CcccCChHHhhh-h--heeeCCCCCHHHHHHHHHHHHHHcC-CCcCHHHH
Confidence 01235667776654 466788999998 6 6899999999999999998887543 47899999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHH
Q 010136 334 ELCARKVAAASGDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSN 408 (517)
Q Consensus 334 ~~ia~~~~~~~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~ 408 (517)
+.++.. ..+.|.++++++.|+.+|..+++. .|+.+|+.+++..
T Consensus 289 ~~I~~y----~~n~Rel~nll~~Aa~~A~~~~~~----------------------------~It~~dI~~vl~~ 331 (531)
T TIGR02902 289 ELIVKY----ASNGREAVNIVQLAAGIALGEGRK----------------------------RILAEDIEWVAEN 331 (531)
T ss_pred HHHHHh----hhhHHHHHHHHHHHHHHHhhCCCc----------------------------EEcHHHHHHHhCC
Confidence 988763 337899999999999888766544 6889999888863
No 91
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.69 E-value=5.1e-16 Score=148.36 Aligned_cols=180 Identities=15% Similarity=0.141 Sum_probs=119.6
Q ss_pred HHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCC
Q 010136 136 VLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKL 215 (517)
Q Consensus 136 l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~ 215 (517)
....+..+.......+++|+||||||||+++.++++++... + ..+.|+++..... .
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~----~---~~v~y~~~~~~~~---~-------------- 87 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR----G---RAVGYVPLDKRAW---F-------------- 87 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC----C---CeEEEEEHHHHhh---h--------------
Confidence 33444444444456799999999999999999999887642 2 3566776643110 0
Q ss_pred CCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC--chHHHHHhccCCCCCCcEEEEEEECCC-Ccchhhcccc
Q 010136 216 NGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD--RAVLHDLFMLTTFPFSRFILIGIANAI-DLADRFLPRL 292 (517)
Q Consensus 216 ~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~--~~~L~~l~~~~~~~~~~v~lI~ian~~-~~~~~l~~~l 292 (517)
...+.+.+. ...+|+|||+|.+.... +..|+.+++..... .+..+|++++.. .....+.|++
T Consensus 88 ------~~~~~~~~~--------~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~-g~~~li~ts~~~p~~l~~~~~~L 152 (235)
T PRK08084 88 ------VPEVLEGME--------QLSLVCIDNIECIAGDELWEMAIFDLYNRILES-GRTRLLITGDRPPRQLNLGLPDL 152 (235)
T ss_pred ------hHHHHHHhh--------hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHc-CCCeEEEeCCCChHHcCcccHHH
Confidence 111112222 12489999999997543 45666666553222 233344445532 1122257999
Q ss_pred cccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 010136 293 QSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRSAI 358 (517)
Q Consensus 293 ~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~ 358 (517)
+||.-....+.+.|++.+++.++|+.+.... ...+++++++++++ ...||+|.++.++....
T Consensus 153 ~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~-~~~l~~~v~~~L~~---~~~~d~r~l~~~l~~l~ 214 (235)
T PRK08084 153 ASRLDWGQIYKLQPLSDEEKLQALQLRARLR-GFELPEDVGRFLLK---RLDREMRTLFMTLDQLD 214 (235)
T ss_pred HHHHhCCceeeecCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHH---hhcCCHHHHHHHHHHHH
Confidence 9994344599999999999999998766532 34789999999998 57999999999998753
No 92
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=1.6e-15 Score=161.04 Aligned_cols=196 Identities=18% Similarity=0.242 Sum_probs=135.3
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCC-CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCC--------------CceEE
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEK-AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQ--------------QPEVF 188 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~-~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~--------------~~~~v 188 (517)
++++|.+..++.|..++.. +. +..++|+||+|+|||++++.+++.+.......+.+ .+.++
T Consensus 16 ~diiGqe~iv~~L~~~i~~----~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~ 91 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIES----NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVI 91 (563)
T ss_pred HHccCcHHHHHHHHHHHHc----CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeE
Confidence 4799999988877777654 34 44588999999999999999999987531111100 12333
Q ss_pred EEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHh-hhccCCCceEEEEEeCcchhcccCchHHHHHhccCC
Q 010136 189 SINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQ-KLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTT 267 (517)
Q Consensus 189 ~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~ 267 (517)
.+++..... .+.++.+... .......+..|+||||+|.|....++.|...++.
T Consensus 92 ~idgas~~~------------------------vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEe-- 145 (563)
T PRK06647 92 EIDGASNTS------------------------VQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEE-- 145 (563)
T ss_pred EecCcccCC------------------------HHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhcc--
Confidence 333322111 2233333221 0111234567999999999976555566555543
Q ss_pred CCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCH
Q 010136 268 FPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDM 347 (517)
Q Consensus 268 ~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~ 347 (517)
+...+++|++++. +..+.+.++|| | +.+.|.+++.+++.++|...+... ...+++++++++++ ...||+
T Consensus 146 -pp~~~vfI~~tte---~~kL~~tI~SR-c--~~~~f~~l~~~el~~~L~~i~~~e-gi~id~eAl~lLa~---~s~Gdl 214 (563)
T PRK06647 146 -PPPYIVFIFATTE---VHKLPATIKSR-C--QHFNFRLLSLEKIYNMLKKVCLED-QIKYEDEALKWIAY---KSTGSV 214 (563)
T ss_pred -CCCCEEEEEecCC---hHHhHHHHHHh-c--eEEEecCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHH---HcCCCH
Confidence 4567888887764 46678899999 7 689999999999999999877642 24688999999988 578999
Q ss_pred HHHHHHHHHHHHH
Q 010136 348 RKALSVCRSAIEI 360 (517)
Q Consensus 348 R~al~ll~~A~~~ 360 (517)
|.|++++..++.+
T Consensus 215 R~alslLdklis~ 227 (563)
T PRK06647 215 RDAYTLFDQVVSF 227 (563)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887644
No 93
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=1.9e-15 Score=155.60 Aligned_cols=205 Identities=17% Similarity=0.179 Sum_probs=135.5
Q ss_pred cCcCCCC---CCCCCcHHHHHHHHHHHHHhhccCCCCe-EEEEcCCCCcHHHHHHHHHHHHHHHHHhcC--------C--
Q 010136 117 LHVSTAP---STIVCREDEQKKVLEFCKKNLEEEKAGS-LYVCGCPGTGKSLSMEKVQHYLVDWAKEAG--------L-- 182 (517)
Q Consensus 117 l~~~~~p---~~l~gRe~e~~~l~~~L~~~l~~~~~~~-lli~G~pGtGKT~l~~~v~~~l~~~~~~~~--------~-- 182 (517)
|...|.| ++++|++...+.|..++. .+..++ ++|+||||+|||++|+.+++.+.......+ .
T Consensus 6 l~~k~RP~~~~eiiGq~~~~~~L~~~~~----~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c 81 (397)
T PRK14955 6 IARKYRPKKFADITAQEHITRTIQNSLR----MGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPC 81 (397)
T ss_pred HHHhcCCCcHhhccChHHHHHHHHHHHH----hCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCC
Confidence 3344555 479999987766655544 445454 889999999999999999999864210000 0
Q ss_pred ------------CCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcc
Q 010136 183 ------------QQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELD 249 (517)
Q Consensus 183 ------------~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD 249 (517)
..+.++.+++..... .+.++.+.... .........|+||||+|
T Consensus 82 ~~c~~c~~~~~~~~~n~~~~~~~~~~~------------------------id~Ir~l~~~~~~~p~~~~~kvvIIdea~ 137 (397)
T PRK14955 82 GECESCRDFDAGTSLNISEFDAASNNS------------------------VDDIRLLRENVRYGPQKGRYRVYIIDEVH 137 (397)
T ss_pred CCCHHHHHHhcCCCCCeEeecccccCC------------------------HHHHHHHHHHHhhchhcCCeEEEEEeChh
Confidence 001222222221111 23333332211 11123455799999999
Q ss_pred hhcccCchHHHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCC
Q 010136 250 YLITRDRAVLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQ 329 (517)
Q Consensus 250 ~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~ 329 (517)
.+....++.|...++. +....++|++++. ...+.+.+++| + ..+.|.+++.+++...+...+... ...++
T Consensus 138 ~l~~~~~~~LLk~LEe---p~~~t~~Il~t~~---~~kl~~tl~sR-~--~~v~f~~l~~~ei~~~l~~~~~~~-g~~i~ 207 (397)
T PRK14955 138 MLSIAAFNAFLKTLEE---PPPHAIFIFATTE---LHKIPATIASR-C--QRFNFKRIPLEEIQQQLQGICEAE-GISVD 207 (397)
T ss_pred hCCHHHHHHHHHHHhc---CCCCeEEEEEeCC---hHHhHHHHHHH-H--HHhhcCCCCHHHHHHHHHHHHHHc-CCCCC
Confidence 9976666666666553 3345666666663 46777888888 6 589999999999999999887642 24689
Q ss_pred hhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 010136 330 PQALELCARKVAAASGDMRKALSVCRSAIEILE 362 (517)
Q Consensus 330 ~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~~a~ 362 (517)
+++++++++ .+.||+|.|++.|..+..++.
T Consensus 208 ~~al~~l~~---~s~g~lr~a~~~L~kl~~~~~ 237 (397)
T PRK14955 208 ADALQLIGR---KAQGSMRDAQSILDQVIAFSV 237 (397)
T ss_pred HHHHHHHHH---HcCCCHHHHHHHHHHHHHhcc
Confidence 999999987 478999999999998776653
No 94
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=2.5e-15 Score=160.34 Aligned_cols=197 Identities=19% Similarity=0.189 Sum_probs=133.8
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCC-eEEEEcCCCCcHHHHHHHHHHHHHHHHHhc----------------------
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAG-SLYVCGCPGTGKSLSMEKVQHYLVDWAKEA---------------------- 180 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~-~lli~G~pGtGKT~l~~~v~~~l~~~~~~~---------------------- 180 (517)
++++|++..+..|..+ +..+... .++|+||+|||||++|+.+++.+.+.....
T Consensus 16 ~eivGQe~i~~~L~~~----i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~ 91 (620)
T PRK14954 16 ADITAQEHITHTIQNS----LRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFD 91 (620)
T ss_pred HHhcCcHHHHHHHHHH----HHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHh
Confidence 4789999877665555 4444544 488999999999999999999986521000
Q ss_pred CCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhcccCchHH
Q 010136 181 GLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITRDRAVL 259 (517)
Q Consensus 181 ~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~~~~L 259 (517)
....+.++++++..... .+.++.+.... .........|+||||+|.|....++.|
T Consensus 92 ~g~~~n~~~~d~~s~~~------------------------vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naL 147 (620)
T PRK14954 92 AGTSLNISEFDAASNNS------------------------VDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAF 147 (620)
T ss_pred ccCCCCeEEecccccCC------------------------HHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHH
Confidence 00011222232221111 23333333211 011223456999999999987666777
Q ss_pred HHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHH
Q 010136 260 HDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARK 339 (517)
Q Consensus 260 ~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~ 339 (517)
...++.+ ...+++|++++. ...+.+.+++| + ..+.|.+++.+++...|...+... ...+++++++++++
T Consensus 148 LK~LEeP---p~~tv~IL~t~~---~~kLl~TI~SR-c--~~vef~~l~~~ei~~~L~~i~~~e-gi~I~~eal~~La~- 216 (620)
T PRK14954 148 LKTLEEP---PPHAIFIFATTE---LHKIPATIASR-C--QRFNFKRIPLDEIQSQLQMICRAE-GIQIDADALQLIAR- 216 (620)
T ss_pred HHHHhCC---CCCeEEEEEeCC---hhhhhHHHHhh-c--eEEecCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHH-
Confidence 7766553 346677777764 46778889998 6 799999999999999999877632 23689999999987
Q ss_pred HHHHhCCHHHHHHHHHHHHHHH
Q 010136 340 VAAASGDMRKALSVCRSAIEIL 361 (517)
Q Consensus 340 ~~~~~Gd~R~al~ll~~A~~~a 361 (517)
...||+|.|++.++....++
T Consensus 217 --~s~Gdlr~al~eLeKL~~y~ 236 (620)
T PRK14954 217 --KAQGSMRDAQSILDQVIAFS 236 (620)
T ss_pred --HhCCCHHHHHHHHHHHHHhc
Confidence 47899999999998877665
No 95
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.68 E-value=1.1e-15 Score=149.97 Aligned_cols=203 Identities=16% Similarity=0.151 Sum_probs=133.1
Q ss_pred CCCCcHHHHHHHHHHHHHh-----h-----c-cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCC
Q 010136 125 TIVCREDEQKKVLEFCKKN-----L-----E-EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCT 193 (517)
Q Consensus 125 ~l~gRe~e~~~l~~~L~~~-----l-----~-~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~ 193 (517)
+++|.++..++|.++.... . . ...+.+++|+||||||||++|+.+++.+..... ...-.++++++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~---~~~~~~v~v~~~ 99 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGY---VRKGHLVSVTRD 99 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCC---cccceEEEecHH
Confidence 4688888777776653221 1 1 112348999999999999999999998865311 111257888863
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhccc------C---chHHHHHhc
Q 010136 194 SLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITR------D---RAVLHDLFM 264 (517)
Q Consensus 194 ~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~------~---~~~L~~l~~ 264 (517)
.+ ...+. +.. ...+...|.+ ....||||||++.|... . ++.|..+++
T Consensus 100 ~l----------~~~~~-------g~~-~~~~~~~~~~------a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le 155 (284)
T TIGR02880 100 DL----------VGQYI-------GHT-APKTKEILKR------AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVME 155 (284)
T ss_pred HH----------hHhhc-------ccc-hHHHHHHHHH------ccCcEEEEechhhhccCCCccchHHHHHHHHHHHHh
Confidence 32 11221 111 2345556652 12369999999998422 1 234444443
Q ss_pred cCCCCCCcEEEEEEECC--CCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHH-
Q 010136 265 LTTFPFSRFILIGIANA--IDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVA- 341 (517)
Q Consensus 265 ~~~~~~~~v~lI~ian~--~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~- 341 (517)
.....+++|++++. ++....++|.+.+| |. ..|.|++|+.+++..|+...+.... ..+++++++.++..+.
T Consensus 156 ---~~~~~~~vI~a~~~~~~~~~~~~np~L~sR-~~-~~i~fp~l~~edl~~I~~~~l~~~~-~~l~~~a~~~L~~~l~~ 229 (284)
T TIGR02880 156 ---NQRDDLVVILAGYKDRMDSFFESNPGFSSR-VA-HHVDFPDYSEAELLVIAGLMLKEQQ-YRFSAEAEEAFADYIAL 229 (284)
T ss_pred ---cCCCCEEEEEeCCcHHHHHHHhhCHHHHhh-CC-cEEEeCCcCHHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHH
Confidence 23457778876543 22223357899998 63 5899999999999999998887543 3678888888777544
Q ss_pred ----HHhCCHHHHHHHHHHHHHH
Q 010136 342 ----AASGDMRKALSVCRSAIEI 360 (517)
Q Consensus 342 ----~~~Gd~R~al~ll~~A~~~ 360 (517)
...|++|.+.++++.|+..
T Consensus 230 ~~~~~~~GN~R~lrn~ve~~~~~ 252 (284)
T TIGR02880 230 RRTQPHFANARSIRNAIDRARLR 252 (284)
T ss_pred hCCCCCCChHHHHHHHHHHHHHH
Confidence 3568999999999888643
No 96
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.68 E-value=1e-14 Score=146.35 Aligned_cols=194 Identities=18% Similarity=0.229 Sum_probs=133.1
Q ss_pred hcCcCCCC---CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeC
Q 010136 116 ALHVSTAP---STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINC 192 (517)
Q Consensus 116 ~l~~~~~p---~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~ 192 (517)
.|.+.|.| ++++|++...+.+..++.. +..+..++++||||+|||++++++++++. ..++++|+
T Consensus 10 ~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~---~~~~~~lll~G~~G~GKT~la~~l~~~~~----------~~~~~i~~ 76 (316)
T PHA02544 10 MWEQKYRPSTIDECILPAADKETFKSIVKK---GRIPNMLLHSPSPGTGKTTVAKALCNEVG----------AEVLFVNG 76 (316)
T ss_pred cceeccCCCcHHHhcCcHHHHHHHHHHHhc---CCCCeEEEeeCcCCCCHHHHHHHHHHHhC----------ccceEecc
Confidence 46677888 5899999988888888663 22344555599999999999999988763 25788898
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchh-cccCchHHHHHhccCCCCCC
Q 010136 193 TSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYL-ITRDRAVLHDLFMLTTFPFS 271 (517)
Q Consensus 193 ~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L-~~~~~~~L~~l~~~~~~~~~ 271 (517)
.. .....+ .. .+..+... ......+.||||||+|.+ ....+..|..+++.. ..
T Consensus 77 ~~-~~~~~i-~~-------------------~l~~~~~~--~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~---~~ 130 (316)
T PHA02544 77 SD-CRIDFV-RN-------------------RLTRFAST--VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAY---SK 130 (316)
T ss_pred Cc-ccHHHH-HH-------------------HHHHHHHh--hcccCCCeEEEEECcccccCHHHHHHHHHHHHhc---CC
Confidence 77 222211 11 11111110 001124579999999999 334566777777653 24
Q ss_pred cEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhh------ccCCCChhHHHHHHHHHHHHhC
Q 010136 272 RFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMEL------SYIVFQPQALELCARKVAAASG 345 (517)
Q Consensus 272 ~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~------~~~~~~~~ai~~ia~~~~~~~G 345 (517)
.+.+|+++|. ...+.+.+++| | ..+.|++++.++..+++...+... ....++++++..+++ ...|
T Consensus 131 ~~~~Ilt~n~---~~~l~~~l~sR-~--~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~---~~~~ 201 (316)
T PHA02544 131 NCSFIITANN---KNGIIEPLRSR-C--RVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVK---KNFP 201 (316)
T ss_pred CceEEEEcCC---hhhchHHHHhh-c--eEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH---hcCC
Confidence 5567777884 45678999998 7 589999999999887766543211 234678889888876 5789
Q ss_pred CHHHHHHHHHHH
Q 010136 346 DMRKALSVCRSA 357 (517)
Q Consensus 346 d~R~al~ll~~A 357 (517)
|.|.+++.++..
T Consensus 202 d~r~~l~~l~~~ 213 (316)
T PHA02544 202 DFRRTINELQRY 213 (316)
T ss_pred CHHHHHHHHHHH
Confidence 999999888754
No 97
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.68 E-value=4.1e-16 Score=160.82 Aligned_cols=210 Identities=21% Similarity=0.232 Sum_probs=140.3
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCC-CeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKA-GSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIF 202 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~-~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~ 202 (517)
++++|.+.....|... +..++. ...+++||.|||||+++|.+++.|.+.....+.+ |..+.....+-
T Consensus 16 ~evvGQe~v~~~L~na----l~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~eP--------C~~C~~Ck~I~ 83 (515)
T COG2812 16 DDVVGQEHVVKTLSNA----LENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEP--------CGKCISCKEIN 83 (515)
T ss_pred HHhcccHHHHHHHHHH----HHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCc--------chhhhhhHhhh
Confidence 4789999855555554 444454 4566899999999999999999987642111111 11110000000
Q ss_pred HH-HHHHhCCCCCCCCCCCHHHHHHHHHHh-hhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEEC
Q 010136 203 SK-ILLKLQPRKKLNGSTSPLQYLQNLYSQ-KLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIAN 280 (517)
Q Consensus 203 ~~-i~~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian 280 (517)
.. ..+-+.-......| .+.++++.++ .+.....+..|.+|||+|.|.....++|...++. +..+|.+|.+|+
T Consensus 84 ~g~~~DviEiDaASn~g---VddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEE---PP~hV~FIlATT 157 (515)
T COG2812 84 EGSLIDVIEIDAASNTG---VDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEE---PPSHVKFILATT 157 (515)
T ss_pred cCCcccchhhhhhhccC---hHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhccccc---CccCeEEEEecC
Confidence 00 00000000000111 4445555543 2344567788999999999987666666555544 567899999888
Q ss_pred CCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 010136 281 AIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRSAIEI 360 (517)
Q Consensus 281 ~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~~ 360 (517)
. +..+.+-+.|| | +++.|..++.+++...|...+.+ +...++++++..+|+ ...|.+|.++.+++.|+..
T Consensus 158 e---~~Kip~TIlSR-c--q~f~fkri~~~~I~~~L~~i~~~-E~I~~e~~aL~~ia~---~a~Gs~RDalslLDq~i~~ 227 (515)
T COG2812 158 E---PQKIPNTILSR-C--QRFDFKRLDLEEIAKHLAAILDK-EGINIEEDALSLIAR---AAEGSLRDALSLLDQAIAF 227 (515)
T ss_pred C---cCcCchhhhhc-c--ccccccCCCHHHHHHHHHHHHHh-cCCccCHHHHHHHHH---HcCCChhhHHHHHHHHHHc
Confidence 5 66788889999 7 89999999999999999987763 234789999999998 6899999999999999865
Q ss_pred H
Q 010136 361 L 361 (517)
Q Consensus 361 a 361 (517)
.
T Consensus 228 ~ 228 (515)
T COG2812 228 G 228 (515)
T ss_pred c
Confidence 3
No 98
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.68 E-value=2.4e-16 Score=178.28 Aligned_cols=215 Identities=12% Similarity=0.109 Sum_probs=137.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHH--H-------------HH------HHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTS--E-------------IF------SKIL 206 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~--~-------------i~------~~i~ 206 (517)
.+.+++++||||||||.+|+++|.+.+ ++++.|++..+...+ . +. ..+.
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~----------VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~ 1698 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSY----------VPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLD 1698 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcC----------CceEEEEHHHHhhcccccccccccccccccccccccccccccc
Confidence 467999999999999999999998754 578999887754321 0 00 0000
Q ss_pred HHh---CCCCCCCCCCC-HHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCch--HHHHH---hccC--CCCCCcEEE
Q 010136 207 LKL---QPRKKLNGSTS-PLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRA--VLHDL---FMLT--TFPFSRFIL 275 (517)
Q Consensus 207 ~~l---~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~--~L~~l---~~~~--~~~~~~v~l 275 (517)
.++ ........+.. ....++.+|+ .++...|+||+|||||.+...... .|..| ++.. ......|+|
T Consensus 1699 ~e~~e~~n~~~~~m~~~e~~~rIr~lFe---lARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIV 1775 (2281)
T CHL00206 1699 TELLTMMNALTMDMMPKIDRFYITLQFE---LAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILV 1775 (2281)
T ss_pred hhhhhhcchhhhhhhhhhhHHHHHHHHH---HHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEE
Confidence 000 00000000111 0123677787 345678999999999999865321 13333 3321 123457999
Q ss_pred EEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHH--hhhccCCCChh--HHHHHHHHHHHHhCCHHHHH
Q 010136 276 IGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERL--MELSYIVFQPQ--ALELCARKVAAASGDMRKAL 351 (517)
Q Consensus 276 I~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl--~~~~~~~~~~~--ai~~ia~~~~~~~Gd~R~al 351 (517)
||+|| .++.+||++.+.+...+.|.++.++..+..+++...+ .++ .++++ .++.+|+.+.+.+ .+..-
T Consensus 1776 IAATN---RPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~---~L~~~~vdl~~LA~~T~GfS--GADLa 1847 (2281)
T CHL00206 1776 IASTH---IPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGF---HLEKKMFHTNGFGSITMGSN--ARDLV 1847 (2281)
T ss_pred EEeCC---CcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCC---CCCcccccHHHHHHhCCCCC--HHHHH
Confidence 99999 5888999999853346799999888888877776332 232 22222 2566777544443 34556
Q ss_pred HHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhcc
Q 010136 352 SVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFK 411 (517)
Q Consensus 352 ~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~ 411 (517)
.+|.+|+.+|..+++. .|+.+++..|+.++..
T Consensus 1848 nLvNEAaliAirq~ks----------------------------~Id~~~I~~Al~Rq~~ 1879 (2281)
T CHL00206 1848 ALTNEALSISITQKKS----------------------------IIDTNTIRSALHRQTW 1879 (2281)
T ss_pred HHHHHHHHHHHHcCCC----------------------------ccCHHHHHHHHHHHHh
Confidence 8999999999988765 7888889888877643
No 99
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.67 E-value=4.2e-15 Score=165.11 Aligned_cols=233 Identities=19% Similarity=0.274 Sum_probs=153.1
Q ss_pred hhhhhccCCCCCCC-ChhHHHHHHhhcCcCCCCCCCCCcHHHHHHHHHHHHHhhcc--CCCCeEEEEcCCCCcHHHHHHH
Q 010136 92 LCDSFKSKPNWNPQ-DVEQMSAVREALHVSTAPSTIVCREDEQKKVLEFCKKNLEE--EKAGSLYVCGCPGTGKSLSMEK 168 (517)
Q Consensus 92 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~p~~l~gRe~e~~~l~~~L~~~l~~--~~~~~lli~G~pGtGKT~l~~~ 168 (517)
+.+.+...|+.... +...+..+++.|+.+ ++|.++..+.|.+++...... ..+.+++|+||||||||++++.
T Consensus 292 yl~~~~~ip~~~~~~~~~~~~~~~~~l~~~-----~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~ 366 (775)
T TIGR00763 292 YLDWLTDLPWGKYSKENLDLKRAKEILDED-----HYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKS 366 (775)
T ss_pred HHHHHHCCCCcccccchhhHHHHHHHhhhh-----cCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHH
Confidence 45555555654332 333566777776665 689999999999987654322 2455799999999999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCc
Q 010136 169 VQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADEL 248 (517)
Q Consensus 169 v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEi 248 (517)
+++.+. ..++.+++....+...+ .+....+.+..+ ..+.+.|... .....|||||||
T Consensus 367 iA~~l~----------~~~~~i~~~~~~~~~~i--------~g~~~~~~g~~~-g~i~~~l~~~----~~~~~villDEi 423 (775)
T TIGR00763 367 IAKALN----------RKFVRFSLGGVRDEAEI--------RGHRRTYVGAMP-GRIIQGLKKA----KTKNPLFLLDEI 423 (775)
T ss_pred HHHHhc----------CCeEEEeCCCcccHHHH--------cCCCCceeCCCC-chHHHHHHHh----CcCCCEEEEech
Confidence 999875 35788887665444332 222222223332 2233444421 222348899999
Q ss_pred chhcccCc----hHHHHHhccCC------------CCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHH
Q 010136 249 DYLITRDR----AVLHDLFMLTT------------FPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQI 312 (517)
Q Consensus 249 D~L~~~~~----~~L~~l~~~~~------------~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~ 312 (517)
|.+....+ ++|..+++..+ ...+++++|+++|. .+.+++.+.+| | ..|.|++|+.++.
T Consensus 424 dk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~---~~~i~~~L~~R-~--~vi~~~~~~~~e~ 497 (775)
T TIGR00763 424 DKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANS---IDTIPRPLLDR-M--EVIELSGYTEEEK 497 (775)
T ss_pred hhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCC---chhCCHHHhCC-e--eEEecCCCCHHHH
Confidence 99986533 56777665310 12257899999995 56788999998 7 6899999999999
Q ss_pred HHHHHHHHh-------hhc--cCCCChhHHHHHHHHHHHHhC--CHHHHH-HHHHHHH
Q 010136 313 IRILQERLM-------ELS--YIVFQPQALELCARKVAAASG--DMRKAL-SVCRSAI 358 (517)
Q Consensus 313 ~~IL~~rl~-------~~~--~~~~~~~ai~~ia~~~~~~~G--d~R~al-~ll~~A~ 358 (517)
.+|+...+. ++. ...++++++..+++.+....| ++++.+ .+|+.++
T Consensus 498 ~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~~~~~~~~ 555 (775)
T TIGR00763 498 LEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIEKICRKAA 555 (775)
T ss_pred HHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHHHHHHHHH
Confidence 999987652 121 236889999999886655555 344443 3555543
No 100
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=3.7e-15 Score=152.52 Aligned_cols=204 Identities=20% Similarity=0.288 Sum_probs=135.7
Q ss_pred CcCCCC---CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhc--CCCCceEEEEeC
Q 010136 118 HVSTAP---STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEA--GLQQPEVFSINC 192 (517)
Q Consensus 118 ~~~~~p---~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~--~~~~~~~v~vn~ 192 (517)
...|.| ++++|++..++.+...+.. +..+.+++||||||+|||++++.+++.+.+..... ....+.++.+++
T Consensus 8 ~~k~rP~~~~~iig~~~~~~~l~~~i~~---~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~ 84 (367)
T PRK14970 8 ARKYRPQTFDDVVGQSHITNTLLNAIEN---NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDA 84 (367)
T ss_pred HHHHCCCcHHhcCCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEecc
Confidence 344544 4789999988777777654 23356899999999999999999998876421100 001134555554
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCC
Q 010136 193 TSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFS 271 (517)
Q Consensus 193 ~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~ 271 (517)
....+... +..++.+. .........||+|||+|.+....++.|...++. +..
T Consensus 85 ~~~~~~~~------------------------i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~---~~~ 137 (367)
T PRK14970 85 ASNNSVDD------------------------IRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEE---PPA 137 (367)
T ss_pred ccCCCHHH------------------------HHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhC---CCC
Confidence 43222222 22222210 011123457999999999976555555544433 334
Q ss_pred cEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHH
Q 010136 272 RFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKAL 351 (517)
Q Consensus 272 ~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al 351 (517)
..++|++++. ...+.+.+.+| + ..+.|.+++.+++..++...+... ...++++++++++. ...||+|.++
T Consensus 138 ~~~~Il~~~~---~~kl~~~l~sr-~--~~v~~~~~~~~~l~~~l~~~~~~~-g~~i~~~al~~l~~---~~~gdlr~~~ 207 (367)
T PRK14970 138 HAIFILATTE---KHKIIPTILSR-C--QIFDFKRITIKDIKEHLAGIAVKE-GIKFEDDALHIIAQ---KADGALRDAL 207 (367)
T ss_pred ceEEEEEeCC---cccCCHHHHhc-c--eeEecCCccHHHHHHHHHHHHHHc-CCCCCHHHHHHHHH---hCCCCHHHHH
Confidence 5566666663 56778889998 6 589999999999999999887643 23589999999987 4679999999
Q ss_pred HHHHHHHHHH
Q 010136 352 SVCRSAIEIL 361 (517)
Q Consensus 352 ~ll~~A~~~a 361 (517)
+.+.....++
T Consensus 208 ~~lekl~~y~ 217 (367)
T PRK14970 208 SIFDRVVTFC 217 (367)
T ss_pred HHHHHHHHhc
Confidence 9998876543
No 101
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.67 E-value=5.2e-15 Score=153.80 Aligned_cols=185 Identities=14% Similarity=0.171 Sum_probs=128.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNL 228 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~ 228 (517)
.+.++|+|++|+|||+|++++++++.... +...++|+++.. ++..+...+... ...+..+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~-----~~~~v~yv~~~~------f~~~~~~~l~~~---------~~~~~~~ 200 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNF-----SDLKVSYMSGDE------FARKAVDILQKT---------HKEIEQF 200 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhC-----CCCeEEEEEHHH------HHHHHHHHHHHh---------hhHHHHH
Confidence 45799999999999999999999876421 224688888743 445555554210 0122222
Q ss_pred HHhhhccCCCceEEEEEeCcchhccc--CchHHHHHhccCCCCCCcEEEEEEECC-CCcchhhcccccccCCCceEEEeC
Q 010136 229 YSQKLHSSVMKMMLIIADELDYLITR--DRAVLHDLFMLTTFPFSRFILIGIANA-IDLADRFLPRLQSMNCKPLVVTFR 305 (517)
Q Consensus 229 ~~~~~~~~~~~~~vI~iDEiD~L~~~--~~~~L~~l~~~~~~~~~~v~lI~ian~-~~~~~~l~~~l~sr~~~~~~i~f~ 305 (517)
.. ......+|+|||++.+..+ .++.|+.+++.....+..+ |.+++. ......+++++.||.-..-.+.+.
T Consensus 201 ~~-----~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~i--Iltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~ 273 (450)
T PRK14087 201 KN-----EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQL--FFSSDKSPELLNGFDNRLITRFNMGLSIAIQ 273 (450)
T ss_pred HH-----HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcE--EEECCCCHHHHhhccHHHHHHHhCCceeccC
Confidence 22 1223468999999999754 3577888887754343333 333443 233445679999994345689999
Q ss_pred CCCHHHHHHHHHHHHhhhcc-CCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 010136 306 AYSKDQIIRILQERLMELSY-IVFQPQALELCARKVAAASGDMRKALSVCRSAIEILEA 363 (517)
Q Consensus 306 p~~~~e~~~IL~~rl~~~~~-~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~~a~~ 363 (517)
|++.+++.+||+.++..... ..++++++++|+. ...||+|.++.+|.++...+..
T Consensus 274 ~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~---~~~gd~R~L~gaL~~l~~~a~~ 329 (450)
T PRK14087 274 KLDNKTATAIIKKEIKNQNIKQEVTEEAINFISN---YYSDDVRKIKGSVSRLNFWSQQ 329 (450)
T ss_pred CcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH---ccCCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999874321 2689999999988 5789999999999888755443
No 102
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=6.1e-16 Score=161.32 Aligned_cols=224 Identities=16% Similarity=0.159 Sum_probs=160.1
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHhhc--------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeC
Q 010136 121 TAPSTIVCREDEQKKVLEFCKKNLE--------EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINC 192 (517)
Q Consensus 121 ~~p~~l~gRe~e~~~l~~~L~~~l~--------~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~ 192 (517)
..+.++.|.++..+++.+.+.-... ..-+.+++++||||||||+++++++.+.. ++|+++++
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~----------VPFf~iSG 216 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG----------VPFFSISG 216 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccC----------CCceeccc
Confidence 4567899999888777776544321 12377899999999999999999987643 57999999
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCc-----------hHHHH
Q 010136 193 TSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDR-----------AVLHD 261 (517)
Q Consensus 193 ~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~-----------~~L~~ 261 (517)
+.+...+. |. ....++.+|.+ +++..|+||||||+|.....+. ..|.+
T Consensus 217 S~FVemfV-----------------Gv-GAsRVRdLF~q---Akk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQ 275 (596)
T COG0465 217 SDFVEMFV-----------------GV-GASRVRDLFEQ---AKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQ 275 (596)
T ss_pred hhhhhhhc-----------------CC-CcHHHHHHHHH---hhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHH
Confidence 88633222 11 25668888874 3466789999999999976531 24555
Q ss_pred HhccCC--CCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCCh-hHHHHHHH
Q 010136 262 LFMLTT--FPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQP-QALELCAR 338 (517)
Q Consensus 262 l~~~~~--~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~-~ai~~ia~ 338 (517)
|+-... ..+..|++|++||. ++-+|+.+.+.....+.|..+.++.....+||+-.+... .+++ --+..+|+
T Consensus 276 lLvEmDGF~~~~gviviaaTNR---pdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~---~l~~~Vdl~~iAr 349 (596)
T COG0465 276 LLVEMDGFGGNEGVIVIAATNR---PDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNK---PLAEDVDLKKIAR 349 (596)
T ss_pred HHhhhccCCCCCceEEEecCCC---cccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcC---CCCCcCCHHHHhh
Confidence 543321 24468999999995 555678877754446799999999999999999777643 2222 22445788
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhcc
Q 010136 339 KVAAASGDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFK 411 (517)
Q Consensus 339 ~~~~~~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~ 411 (517)
.+...+|. ...+++.+|+-+|-+.+.. .|++.|+.+|+.++..
T Consensus 350 ~tpGfsGA--dL~nl~NEAal~aar~n~~----------------------------~i~~~~i~ea~drv~~ 392 (596)
T COG0465 350 GTPGFSGA--DLANLLNEAALLAARRNKK----------------------------EITMRDIEEAIDRVIA 392 (596)
T ss_pred hCCCcccc--hHhhhHHHHHHHHHHhcCe----------------------------eEeccchHHHHHHHhc
Confidence 76666664 3347888888888887766 7899999999888754
No 103
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=4.2e-15 Score=159.95 Aligned_cols=195 Identities=18% Similarity=0.220 Sum_probs=129.6
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCC-CeEEEEcCCCCcHHHHHHHHHHHHHHHHHhc-CC--------------CCceE
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKA-GSLYVCGCPGTGKSLSMEKVQHYLVDWAKEA-GL--------------QQPEV 187 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~-~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~-~~--------------~~~~~ 187 (517)
++++|.+..++.|..++.. +.. ..++|+||+|+|||++++.+++.+.+..... +. ....+
T Consensus 16 ~eiiGq~~~~~~L~~~i~~----~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~ 91 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAE----GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDV 91 (585)
T ss_pred HHhcCCHHHHHHHHHHHHh----CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeE
Confidence 4799999977776666543 343 4568999999999999999999886422100 00 00122
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhcccCchHHHHHhccC
Q 010136 188 FSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITRDRAVLHDLFMLT 266 (517)
Q Consensus 188 v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~ 266 (517)
+.+++....+ .+.++.+.... .........||||||+|.|....++.|...++.+
T Consensus 92 ~~i~~~~~~~------------------------vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEep 147 (585)
T PRK14950 92 IEMDAASHTS------------------------VDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEP 147 (585)
T ss_pred EEEeccccCC------------------------HHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcC
Confidence 3333321111 22233222210 1112345679999999999766566666655543
Q ss_pred CCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCC
Q 010136 267 TFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGD 346 (517)
Q Consensus 267 ~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd 346 (517)
...++||++++. .+.+.+.++|| + ..+.|.+++..++..++..++... ...+++++++++++ ...||
T Consensus 148 ---p~~tv~Il~t~~---~~kll~tI~SR-~--~~i~f~~l~~~el~~~L~~~a~~e-gl~i~~eal~~La~---~s~Gd 214 (585)
T PRK14950 148 ---PPHAIFILATTE---VHKVPATILSR-C--QRFDFHRHSVADMAAHLRKIAAAE-GINLEPGALEAIAR---AATGS 214 (585)
T ss_pred ---CCCeEEEEEeCC---hhhhhHHHHhc-c--ceeeCCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHH---HcCCC
Confidence 345667766764 45577888898 6 689999999999999999877642 23688999999887 46799
Q ss_pred HHHHHHHHHHHHH
Q 010136 347 MRKALSVCRSAIE 359 (517)
Q Consensus 347 ~R~al~ll~~A~~ 359 (517)
+|.+++.++....
T Consensus 215 lr~al~~LekL~~ 227 (585)
T PRK14950 215 MRDAENLLQQLAT 227 (585)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987543
No 104
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.67 E-value=4.3e-15 Score=163.44 Aligned_cols=222 Identities=16% Similarity=0.229 Sum_probs=155.9
Q ss_pred hhhhhhhhccCCCCCCC-ChhHHHHHHhhcCcCCCCCCCCCcHHHHHHHHHHHHHhhc--cCCCCeEEEEcCCCCcHHHH
Q 010136 89 KKKLCDSFKSKPNWNPQ-DVEQMSAVREALHVSTAPSTIVCREDEQKKVLEFCKKNLE--EEKAGSLYVCGCPGTGKSLS 165 (517)
Q Consensus 89 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~p~~l~gRe~e~~~l~~~L~~~l~--~~~~~~lli~G~pGtGKT~l 165 (517)
.+.|.+++..-||.... +.-.+..+++.|+.++ +|.++..+.|.+++..... ...+..++|+||||+|||++
T Consensus 291 ~~~yl~~~~~~pw~~~~~~~~~~~~~~~~l~~~~-----~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl 365 (784)
T PRK10787 291 VRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDH-----YGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSL 365 (784)
T ss_pred HHHHHHHHHhCCCCCCCcccccHHHHHHHhhhhc-----cCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHH
Confidence 44567788887875544 4457899999988875 8999999999998874332 23466899999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEE
Q 010136 166 MEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIA 245 (517)
Q Consensus 166 ~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~i 245 (517)
++.++..++ ..++.+++....+...+ .+....+.+..+.. +...+.. ......||+|
T Consensus 366 ~~~ia~~l~----------~~~~~i~~~~~~d~~~i--------~g~~~~~~g~~~G~-~~~~l~~----~~~~~~vill 422 (784)
T PRK10787 366 GQSIAKATG----------RKYVRMALGGVRDEAEI--------RGHRRTYIGSMPGK-LIQKMAK----VGVKNPLFLL 422 (784)
T ss_pred HHHHHHHhC----------CCEEEEEcCCCCCHHHh--------ccchhccCCCCCcH-HHHHHHh----cCCCCCEEEE
Confidence 999998765 35777887766555432 22222222333233 3333331 1223358999
Q ss_pred eCcchhcccC----chHHHHHhccC------------CCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCH
Q 010136 246 DELDYLITRD----RAVLHDLFMLT------------TFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSK 309 (517)
Q Consensus 246 DEiD~L~~~~----~~~L~~l~~~~------------~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~ 309 (517)
||+|.+.... +.+|+.+++-. ...-+++++|+++|.. .+.+++.+| + ..|.|.+|+.
T Consensus 423 DEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~----~i~~aLl~R-~--~ii~~~~~t~ 495 (784)
T PRK10787 423 DEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM----NIPAPLLDR-M--EVIRLSGYTE 495 (784)
T ss_pred EChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC----CCCHHHhcc-e--eeeecCCCCH
Confidence 9999998654 36788877642 1233789999999864 378899998 7 6899999999
Q ss_pred HHHHHHHHHHHh--h-----hc--cCCCChhHHHHHHHHHHHHhC
Q 010136 310 DQIIRILQERLM--E-----LS--YIVFQPQALELCARKVAAASG 345 (517)
Q Consensus 310 ~e~~~IL~~rl~--~-----~~--~~~~~~~ai~~ia~~~~~~~G 345 (517)
++..+|++..+. . +. ...+++++++.+++.+....|
T Consensus 496 eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~G 540 (784)
T PRK10787 496 DEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAG 540 (784)
T ss_pred HHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccC
Confidence 999999988773 1 11 236789999999885554445
No 105
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.66 E-value=1.1e-15 Score=170.73 Aligned_cols=212 Identities=17% Similarity=0.185 Sum_probs=146.2
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHH
Q 010136 123 PSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIF 202 (517)
Q Consensus 123 p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~ 202 (517)
.+.++||+++++++.++|.. ...++++|+||||||||++++.++..+........+....++.+++..+..
T Consensus 178 ~~~~igr~~ei~~~~~~L~r----~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~a----- 248 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGR----RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLA----- 248 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcc----cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhc-----
Confidence 35689999999999998765 356789999999999999999999987532111111224677776643211
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCc----hHHHHHhccCCCCCCcEEEEEE
Q 010136 203 SKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDR----AVLHDLFMLTTFPFSRFILIGI 278 (517)
Q Consensus 203 ~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~----~~L~~l~~~~~~~~~~v~lI~i 278 (517)
+. .+.| ...+.+..++... ...+++||||||+|.|..... ..+.+++. +......+.+||+
T Consensus 249 --------g~--~~~g-e~e~rl~~i~~~~---~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLk-p~l~rg~l~~Iga 313 (821)
T CHL00095 249 --------GT--KYRG-EFEERLKRIFDEI---QENNNIILVIDEVHTLIGAGAAEGAIDAANILK-PALARGELQCIGA 313 (821)
T ss_pred --------cC--CCcc-HHHHHHHHHHHHH---HhcCCeEEEEecHHHHhcCCCCCCcccHHHHhH-HHHhCCCcEEEEe
Confidence 00 0112 2255677777632 134578999999999986431 11233332 2234568999998
Q ss_pred ECCCCcch--hhcccccccCCCceEEEeCCCCHHHHHHHHHHHHh---hhccCCCChhHHHHHHHHHHHHhCC---HHHH
Q 010136 279 ANAIDLAD--RFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLM---ELSYIVFQPQALELCARKVAAASGD---MRKA 350 (517)
Q Consensus 279 an~~~~~~--~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~---~~~~~~~~~~ai~~ia~~~~~~~Gd---~R~a 350 (517)
||..++.. ..++.+.+| | +.|.+.+++.++...|++.... ......++++++..++....++.+| +++|
T Consensus 314 Tt~~ey~~~ie~D~aL~rR-f--~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdka 390 (821)
T CHL00095 314 TTLDEYRKHIEKDPALERR-F--QPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKA 390 (821)
T ss_pred CCHHHHHHHHhcCHHHHhc-c--eEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHH
Confidence 88544322 246888888 7 6789999999999999886543 2233458999999999887778887 9999
Q ss_pred HHHHHHHHHHH
Q 010136 351 LSVCRSAIEIL 361 (517)
Q Consensus 351 l~ll~~A~~~a 361 (517)
+++++.|+..+
T Consensus 391 idlld~a~a~~ 401 (821)
T CHL00095 391 IDLLDEAGSRV 401 (821)
T ss_pred HHHHHHHHHHH
Confidence 99999988654
No 106
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.66 E-value=2.3e-15 Score=143.42 Aligned_cols=186 Identities=16% Similarity=0.169 Sum_probs=122.8
Q ss_pred cHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHH
Q 010136 129 REDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLK 208 (517)
Q Consensus 129 Re~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~ 208 (517)
.+..++.+..+ +......+++|+|++|||||++++.+++.+... + ..+++++|..+....
T Consensus 22 ~~~~~~~l~~~----~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~----~---~~~~~i~~~~~~~~~--------- 81 (226)
T TIGR03420 22 NAELLAALRQL----AAGKGDRFLYLWGESGSGKSHLLQAACAAAEER----G---KSAIYLPLAELAQAD--------- 81 (226)
T ss_pred cHHHHHHHHHH----HhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc----C---CcEEEEeHHHHHHhH---------
Confidence 33444444444 334567899999999999999999999887532 2 358899987653211
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC--chHHHHHhccCCCCCCcEEEEEEECCCC-cc
Q 010136 209 LQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD--RAVLHDLFMLTTFPFSRFILIGIANAID-LA 285 (517)
Q Consensus 209 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~--~~~L~~l~~~~~~~~~~v~lI~ian~~~-~~ 285 (517)
...+.. .....+|+|||+|.+.... ++.|+.+++.....+. .+|.+++... ..
T Consensus 82 -----------------~~~~~~-----~~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~--~iIits~~~~~~~ 137 (226)
T TIGR03420 82 -----------------PEVLEG-----LEQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGG--RLLIAGRAAPAQL 137 (226)
T ss_pred -----------------HHHHhh-----cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCC--eEEEECCCChHHC
Confidence 111110 1122489999999997654 6777777764322222 2333344321 11
Q ss_pred hhhcccccccCCC-ceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 010136 286 DRFLPRLQSMNCK-PLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRSAIEILEA 363 (517)
Q Consensus 286 ~~l~~~l~sr~~~-~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~~a~~ 363 (517)
....+.+.+| +. ...+.++|++.+++..+++..+... ...+++++++.+++ ...|++|.+.++++.+...+..
T Consensus 138 ~~~~~~L~~r-~~~~~~i~l~~l~~~e~~~~l~~~~~~~-~~~~~~~~l~~L~~---~~~gn~r~L~~~l~~~~~~~~~ 211 (226)
T TIGR03420 138 PLRLPDLRTR-LAWGLVFQLPPLSDEEKIAALQSRAARR-GLQLPDEVADYLLR---HGSRDMGSLMALLDALDRASLA 211 (226)
T ss_pred CcccHHHHHH-HhcCeeEecCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHH---hccCCHHHHHHHHHHHHHHHHH
Confidence 1112567776 42 4689999999999999998776533 24689999999988 4899999999999887765444
No 107
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.5e-15 Score=156.64 Aligned_cols=178 Identities=19% Similarity=0.208 Sum_probs=128.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNL 228 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~ 228 (517)
..++++|||||||||.+|.+++.... +.|+.|-++++.++|- |.+ ++.++.+
T Consensus 701 ~~giLLyGppGcGKT~la~a~a~~~~----------~~fisvKGPElL~KyI-----------------GaS-Eq~vR~l 752 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLASAIASNSN----------LRFISVKGPELLSKYI-----------------GAS-EQNVRDL 752 (952)
T ss_pred ccceEEECCCCCcHHHHHHHHHhhCC----------eeEEEecCHHHHHHHh-----------------ccc-HHHHHHH
Confidence 56899999999999999999987754 5799999887655554 555 8889999
Q ss_pred HHhhhccCCCceEEEEEeCcchhcccC--------chHHHHHhccC-CC-CCCcEEEEEEECCCCcchhhcccccccCCC
Q 010136 229 YSQKLHSSVMKMMLIIADELDYLITRD--------RAVLHDLFMLT-TF-PFSRFILIGIANAIDLADRFLPRLQSMNCK 298 (517)
Q Consensus 229 ~~~~~~~~~~~~~vI~iDEiD~L~~~~--------~~~L~~l~~~~-~~-~~~~v~lI~ian~~~~~~~l~~~l~sr~~~ 298 (517)
|.. +...+|||+|+||+|.+..++ ..++.+|+... .. .-..|.++++|.. ++-++|++.+.+..
T Consensus 753 F~r---A~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsR---pdliDpALLRpGRl 826 (952)
T KOG0735|consen 753 FER---AQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSR---PDLIDPALLRPGRL 826 (952)
T ss_pred HHH---hhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCC---ccccCHhhcCCCcc
Confidence 984 356789999999999999864 24555555331 11 1245777887774 55678888886445
Q ss_pred ceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHH
Q 010136 299 PLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASG-DMRKALSVCRSAIEILEAEM 365 (517)
Q Consensus 299 ~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~G-d~R~al~ll~~A~~~a~~~~ 365 (517)
.+.+.-+.++..+..+||+.....+ ..-++-.++.+|.++++.+| |+. .+|..|-..|..+.
T Consensus 827 D~~v~C~~P~~~eRl~il~~ls~s~--~~~~~vdl~~~a~~T~g~tgADlq---~ll~~A~l~avh~~ 889 (952)
T KOG0735|consen 827 DKLVYCPLPDEPERLEILQVLSNSL--LKDTDVDLECLAQKTDGFTGADLQ---SLLYNAQLAAVHEI 889 (952)
T ss_pred ceeeeCCCCCcHHHHHHHHHHhhcc--CCccccchHHHhhhcCCCchhhHH---HHHHHHHHHHHHHH
Confidence 5678888999999999999665544 12234458889998888887 554 35556555544443
No 108
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.65 E-value=1.4e-15 Score=148.65 Aligned_cols=157 Identities=15% Similarity=0.119 Sum_probs=112.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHH
Q 010136 147 EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQ 226 (517)
Q Consensus 147 ~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~ 226 (517)
..+..++|+||||||||.++++++++++ +.++.+++.++.+.+. |.+ .+.++
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg----------~~~i~vsa~eL~sk~v-----------------GEs-Ek~IR 197 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMG----------IEPIVMSAGELESENA-----------------GEP-GKLIR 197 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcC----------CCeEEEEHHHhhcCcC-----------------CcH-HHHHH
Confidence 4577899999999999999999999875 4689999988755444 444 88899
Q ss_pred HHHHhhhc--cCCCceEEEEEeCcchhcccCc--------h----HHHHHhc----------c-CCCCCCcEEEEEEECC
Q 010136 227 NLYSQKLH--SSVMKMMLIIADELDYLITRDR--------A----VLHDLFM----------L-TTFPFSRFILIGIANA 281 (517)
Q Consensus 227 ~~~~~~~~--~~~~~~~vI~iDEiD~L~~~~~--------~----~L~~l~~----------~-~~~~~~~v~lI~ian~ 281 (517)
++|..... ....+|+||||||||.++.+.. . .|.++++ | .......+.||+++|+
T Consensus 198 ~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNr 277 (413)
T PLN00020 198 QRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGND 277 (413)
T ss_pred HHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCC
Confidence 99975321 1356899999999999986521 1 2333333 2 1224567999999995
Q ss_pred CCcchhhccccccc-CCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHH
Q 010136 282 IDLADRFLPRLQSM-NCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKV 340 (517)
Q Consensus 282 ~~~~~~l~~~l~sr-~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~ 340 (517)
++.|++.+.+. +|. .+ |..++.+++.+||+..+... .++...+..++...
T Consensus 278 ---pd~LDpALlRpGRfD--k~-i~lPd~e~R~eIL~~~~r~~---~l~~~dv~~Lv~~f 328 (413)
T PLN00020 278 ---FSTLYAPLIRDGRME--KF-YWAPTREDRIGVVHGIFRDD---GVSREDVVKLVDTF 328 (413)
T ss_pred ---cccCCHhHcCCCCCC--ce-eCCCCHHHHHHHHHHHhccC---CCCHHHHHHHHHcC
Confidence 67788999883 152 32 45789999999999877653 45666666666643
No 109
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=1.6e-14 Score=155.12 Aligned_cols=216 Identities=20% Similarity=0.229 Sum_probs=139.8
Q ss_pred cCcCCCC---CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCC
Q 010136 117 LHVSTAP---STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCT 193 (517)
Q Consensus 117 l~~~~~p---~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~ 193 (517)
|+..|.| +.++|++...+.|..++.. +.-...++|+||+|+|||++|+.+++.+.+..... ...-.|.
T Consensus 6 l~~kyRP~~f~~liGq~~i~~~L~~~l~~---~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~------~~~~~Cg 76 (620)
T PRK14948 6 LHHKYRPQRFDELVGQEAIATTLKNALIS---NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDK------PTPEPCG 76 (620)
T ss_pred HHHHhCCCcHhhccChHHHHHHHHHHHHc---CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCC------CCCCCCc
Confidence 4455555 5789999877777666554 22356899999999999999999999987531100 0001122
Q ss_pred CCCCHHHHHHHHHHHhCCCC--CCCCCCCHHHHHHHHHHhhh-ccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCC
Q 010136 194 SLTNTSEIFSKILLKLQPRK--KLNGSTSPLQYLQNLYSQKL-HSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPF 270 (517)
Q Consensus 194 ~~~s~~~i~~~i~~~l~~~~--~~~~~~~~~~~l~~~~~~~~-~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~ 270 (517)
. ...+..+........ .........+.+++++.... ........||||||+|.|....++.|...++. +.
T Consensus 77 ~----C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEe---Pp 149 (620)
T PRK14948 77 K----CELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEE---PP 149 (620)
T ss_pred c----cHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhc---CC
Confidence 1 112222221111100 00001111445555554211 11124567999999999977666677666654 44
Q ss_pred CcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHH
Q 010136 271 SRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKA 350 (517)
Q Consensus 271 ~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~a 350 (517)
..+++|+++++ +.++.+.++|| | ..+.|.+++.+++...|...+... ...++++++.++++ ...||+|.|
T Consensus 150 ~~tvfIL~t~~---~~~llpTIrSR-c--~~~~f~~l~~~ei~~~L~~ia~ke-gi~is~~al~~La~---~s~G~lr~A 219 (620)
T PRK14948 150 PRVVFVLATTD---PQRVLPTIISR-C--QRFDFRRIPLEAMVQHLSEIAEKE-SIEIEPEALTLVAQ---RSQGGLRDA 219 (620)
T ss_pred cCeEEEEEeCC---hhhhhHHHHhh-e--eEEEecCCCHHHHHHHHHHHHHHh-CCCCCHHHHHHHHH---HcCCCHHHH
Confidence 57888888874 56788899999 7 789999999999999888776542 23688899998887 478999999
Q ss_pred HHHHHHHH
Q 010136 351 LSVCRSAI 358 (517)
Q Consensus 351 l~ll~~A~ 358 (517)
+++++...
T Consensus 220 ~~lLekls 227 (620)
T PRK14948 220 ESLLDQLS 227 (620)
T ss_pred HHHHHHHH
Confidence 99987643
No 110
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.65 E-value=1.1e-14 Score=153.20 Aligned_cols=215 Identities=14% Similarity=0.185 Sum_probs=138.2
Q ss_pred hhcCcCCCCCCCC-CcHHHHHHHHHHHHHhhcc--CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEe
Q 010136 115 EALHVSTAPSTIV-CREDEQKKVLEFCKKNLEE--EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSIN 191 (517)
Q Consensus 115 ~~l~~~~~p~~l~-gRe~e~~~l~~~L~~~l~~--~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn 191 (517)
..|...+..++++ |-..++ ....+...... ...+.+||||++|+|||+|+.++++++.... +...++|++
T Consensus 279 a~L~~~~TFDnFvvG~sN~~--A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~-----~g~~V~Yit 351 (617)
T PRK14086 279 ARLNPKYTFDTFVIGASNRF--AHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLY-----PGTRVRYVS 351 (617)
T ss_pred CCCCCCCCHhhhcCCCccHH--HHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhC-----CCCeEEEee
Confidence 3466677777665 443332 11222222221 1234599999999999999999999876421 124688998
Q ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC--chHHHHHhccCCCC
Q 010136 192 CTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD--RAVLHDLFMLTTFP 269 (517)
Q Consensus 192 ~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~--~~~L~~l~~~~~~~ 269 (517)
+..+ ...+...+.. ...+.+.+.|. ..-+|+||||+.+..+. ++.|+.+++.....
T Consensus 352 aeef------~~el~~al~~--------~~~~~f~~~y~--------~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~ 409 (617)
T PRK14086 352 SEEF------TNEFINSIRD--------GKGDSFRRRYR--------EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNA 409 (617)
T ss_pred HHHH------HHHHHHHHHh--------ccHHHHHHHhh--------cCCEEEEehhccccCCHHHHHHHHHHHHHHHhc
Confidence 7553 2233333311 01233444333 34689999999997653 56777888764433
Q ss_pred CCcEEEEEEECCC-CcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHH
Q 010136 270 FSRFILIGIANAI-DLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMR 348 (517)
Q Consensus 270 ~~~v~lI~ian~~-~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R 348 (517)
+..++| ++|.. .-...++++|.||+...-.+.+.+++.+.+.+||+.++... ...++++++++|++ ...+|+|
T Consensus 410 gk~III--TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r-~l~l~~eVi~yLa~---r~~rnvR 483 (617)
T PRK14086 410 NKQIVL--SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQE-QLNAPPEVLEFIAS---RISRNIR 483 (617)
T ss_pred CCCEEE--ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhc-CCCCCHHHHHHHHH---hccCCHH
Confidence 334333 35532 22234678999995455689999999999999999887642 34789999999998 4678888
Q ss_pred HHHHHHHHHHHHHHHH
Q 010136 349 KALSVCRSAIEILEAE 364 (517)
Q Consensus 349 ~al~ll~~A~~~a~~~ 364 (517)
....++.+....+...
T Consensus 484 ~LegaL~rL~a~a~~~ 499 (617)
T PRK14086 484 ELEGALIRVTAFASLN 499 (617)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8887777665555443
No 111
>PRK05642 DNA replication initiation factor; Validated
Probab=99.64 E-value=7.2e-15 Score=140.24 Aligned_cols=168 Identities=18% Similarity=0.196 Sum_probs=116.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNL 228 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~ 228 (517)
.+.++|+|++|+|||++++++++++... + ..++|+++..+... ...+.+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~----~---~~v~y~~~~~~~~~-----------------------~~~~~~~ 94 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQR----G---EPAVYLPLAELLDR-----------------------GPELLDN 94 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC----C---CcEEEeeHHHHHhh-----------------------hHHHHHh
Confidence 4689999999999999999999887532 2 35788887543210 0112222
Q ss_pred HHhhhccCCCceEEEEEeCcchhcccC--chHHHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCC
Q 010136 229 YSQKLHSSVMKMMLIIADELDYLITRD--RAVLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRA 306 (517)
Q Consensus 229 ~~~~~~~~~~~~~vI~iDEiD~L~~~~--~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p 306 (517)
+. ..-+|+||+++.+.... ++.|+.+++..... .+.+|++.+..........+++.||.-....+.+.+
T Consensus 95 ~~--------~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~-g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~ 165 (234)
T PRK05642 95 LE--------QYELVCLDDLDVIAGKADWEEALFHLFNRLRDS-GRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRG 165 (234)
T ss_pred hh--------hCCEEEEechhhhcCChHHHHHHHHHHHHHHhc-CCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCC
Confidence 22 12478999999886543 46688888764322 345555533333333334799999943445788999
Q ss_pred CCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 010136 307 YSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRSAIE 359 (517)
Q Consensus 307 ~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~ 359 (517)
++.+++..|++.+.... ...+++++++++++ ...||+|.++.++.....
T Consensus 166 ~~~e~~~~il~~ka~~~-~~~l~~ev~~~L~~---~~~~d~r~l~~~l~~l~~ 214 (234)
T PRK05642 166 LSDEDKLRALQLRASRR-GLHLTDEVGHFILT---RGTRSMSALFDLLERLDQ 214 (234)
T ss_pred CCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHH---hcCCCHHHHHHHHHHHHH
Confidence 99999999999776532 24689999999998 578999999888876643
No 112
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.63 E-value=2.6e-15 Score=163.86 Aligned_cols=239 Identities=13% Similarity=0.145 Sum_probs=153.1
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCC-CHHHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLT-NTSEIF 202 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~-s~~~i~ 202 (517)
+.++||++++.++.+.|.. ....+++|+||||||||++++.++..+... +. ++...+|..+. +...+
T Consensus 186 ~~liGR~~ei~~~i~iL~r----~~~~n~LLvGppGvGKT~lae~la~~i~~~----~v---P~~l~~~~~~~l~~~~l- 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCR----RRKNNPLLVGESGVGKTAIAEGLAWRIVQG----DV---PEVMADCTIYSLDIGSL- 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhc----cCCCCeEEECCCCCCHHHHHHHHHHHHHhc----CC---CchhcCCeEEeccHHHH-
Confidence 4699999999999988766 356789999999999999999999876431 11 12222222211 11111
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC-----chHHHHHhccCCCCCCcEEEEE
Q 010136 203 SKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD-----RAVLHDLFMLTTFPFSRFILIG 277 (517)
Q Consensus 203 ~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~-----~~~L~~l~~~~~~~~~~v~lI~ 277 (517)
+.+. ...| ...+.++.++... ....+.||||||+|.|.... +..+.+++.- ......+.+||
T Consensus 254 ------laG~--~~~G-e~e~rl~~l~~~l---~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp-~L~~g~i~vIg 320 (758)
T PRK11034 254 ------LAGT--KYRG-DFEKRFKALLKQL---EQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKP-LLSSGKIRVIG 320 (758)
T ss_pred ------hccc--chhh-hHHHHHHHHHHHH---HhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHH-HHhCCCeEEEe
Confidence 1000 0111 1245556665421 12356799999999996432 2223333321 12356899999
Q ss_pred EECCCCcc--hhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHh---hhccCCCChhHHHHHHHHHHHHhCC---HHH
Q 010136 278 IANAIDLA--DRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLM---ELSYIVFQPQALELCARKVAAASGD---MRK 349 (517)
Q Consensus 278 ian~~~~~--~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~---~~~~~~~~~~ai~~ia~~~~~~~Gd---~R~ 349 (517)
+||..++. ...++++.+| | +.|.+++++.++...||+.... ......++++++..++.....+-.+ +.+
T Consensus 321 ATt~~E~~~~~~~D~AL~rR-F--q~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdK 397 (758)
T PRK11034 321 STTYQEFSNIFEKDRALARR-F--QKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDK 397 (758)
T ss_pred cCChHHHHHHhhccHHHHhh-C--cEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHH
Confidence 88854432 1358999988 7 6899999999999999997554 3345678999998887765554433 679
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccChh
Q 010136 350 ALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSPV 414 (517)
Q Consensus 350 al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~~ 414 (517)
|+++|+.|+..+...... . ....|+.+||.+++....+-|.
T Consensus 398 aidlldea~a~~~~~~~~--~----------------------~~~~v~~~~i~~v~~~~tgip~ 438 (758)
T PRK11034 398 AIDVIDEAGARARLMPVS--K----------------------RKKTVNVADIESVVARIARIPE 438 (758)
T ss_pred HHHHHHHHHHhhccCccc--c----------------------cccccChhhHHHHHHHHhCCCh
Confidence 999999998543211000 0 0015888889888888776653
No 113
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=2.8e-14 Score=153.18 Aligned_cols=197 Identities=20% Similarity=0.255 Sum_probs=137.1
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCe-EEEEcCCCCcHHHHHHHHHHHHHHHHHh---------------cCCCCceE
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGS-LYVCGCPGTGKSLSMEKVQHYLVDWAKE---------------AGLQQPEV 187 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~-lli~G~pGtGKT~l~~~v~~~l~~~~~~---------------~~~~~~~~ 187 (517)
++++|++...+.|..++.. +...+ ++|+||+|+|||++++.+++.+.+.... .....+.+
T Consensus 17 ~~viGq~~~~~~L~~~i~~----~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~ 92 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIAT----NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI 92 (614)
T ss_pred HHhcCcHHHHHHHHHHHHc----CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce
Confidence 5799999987777666553 44444 7899999999999999999988632100 00012345
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhcccCchHHHHHhccC
Q 010136 188 FSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITRDRAVLHDLFMLT 266 (517)
Q Consensus 188 v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~ 266 (517)
+++++....+.. .++.++.+. .........|+||||+|.|....++.|...++.+
T Consensus 93 ~~ld~~~~~~vd------------------------~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEep 148 (614)
T PRK14971 93 HELDAASNNSVD------------------------DIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEP 148 (614)
T ss_pred EEecccccCCHH------------------------HHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCC
Confidence 555554332222 222222210 0112234579999999999776677777777653
Q ss_pred CCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCC
Q 010136 267 TFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGD 346 (517)
Q Consensus 267 ~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd 346 (517)
....++|++++. ...+.+.++|| | ..+.|.+++.+++...|...+... ...++++++++++. ...||
T Consensus 149 ---p~~tifIL~tt~---~~kIl~tI~SR-c--~iv~f~~ls~~ei~~~L~~ia~~e-gi~i~~~al~~La~---~s~gd 215 (614)
T PRK14971 149 ---PSYAIFILATTE---KHKILPTILSR-C--QIFDFNRIQVADIVNHLQYVASKE-GITAEPEALNVIAQ---KADGG 215 (614)
T ss_pred ---CCCeEEEEEeCC---chhchHHHHhh-h--heeecCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHH---HcCCC
Confidence 346677777763 46788999999 7 689999999999999999877643 23678899999987 46899
Q ss_pred HHHHHHHHHHHHHHH
Q 010136 347 MRKALSVCRSAIEIL 361 (517)
Q Consensus 347 ~R~al~ll~~A~~~a 361 (517)
+|.|++.+.....++
T Consensus 216 lr~al~~Lekl~~y~ 230 (614)
T PRK14971 216 MRDALSIFDQVVSFT 230 (614)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999998876554
No 114
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.63 E-value=1.8e-14 Score=149.19 Aligned_cols=205 Identities=14% Similarity=0.205 Sum_probs=133.4
Q ss_pred cCcCCCCCCCC-CcHHHHHHHHHHHHHhhc------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEE
Q 010136 117 LHVSTAPSTIV-CREDEQKKVLEFCKKNLE------EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFS 189 (517)
Q Consensus 117 l~~~~~p~~l~-gRe~e~~~l~~~L~~~l~------~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~ 189 (517)
|++++..++++ |...+.. ...+..... +...+.++|||++|+|||++++++++++... + ..++|
T Consensus 104 l~~~~tFdnFv~g~~N~~a--~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~----~---~~v~y 174 (445)
T PRK12422 104 LDPLMTFANFLVTPENDLP--HRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRES----G---GKILY 174 (445)
T ss_pred CCccccccceeeCCcHHHH--HHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHc----C---CCEEE
Confidence 55667777655 5544432 222222221 1123579999999999999999999988642 2 46788
Q ss_pred EeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhccc--CchHHHHHhccCC
Q 010136 190 INCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITR--DRAVLHDLFMLTT 267 (517)
Q Consensus 190 vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~--~~~~L~~l~~~~~ 267 (517)
+++.. +...+...+.. ...+.+...+ ....+|+|||++.+..+ .++.|+.+++...
T Consensus 175 i~~~~------f~~~~~~~l~~--------~~~~~f~~~~--------~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~ 232 (445)
T PRK12422 175 VRSEL------FTEHLVSAIRS--------GEMQRFRQFY--------RNVDALFIEDIEVFSGKGATQEEFFHTFNSLH 232 (445)
T ss_pred eeHHH------HHHHHHHHHhc--------chHHHHHHHc--------ccCCEEEEcchhhhcCChhhHHHHHHHHHHHH
Confidence 88643 33334444421 0122333333 23469999999998754 3566777766432
Q ss_pred CCCCcEEEEEEECC-CCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCC
Q 010136 268 FPFSRFILIGIANA-IDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGD 346 (517)
Q Consensus 268 ~~~~~v~lI~ian~-~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd 346 (517)
..+ +.++++ ++. ......+++++.||.-....+.+.|++.+++..||+.++... ...++++++++++. ...+|
T Consensus 233 ~~~-k~IIlt-s~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~-~~~l~~evl~~la~---~~~~d 306 (445)
T PRK12422 233 TEG-KLIVIS-STCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEAL-SIRIEETALDFLIE---ALSSN 306 (445)
T ss_pred HCC-CcEEEe-cCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHH---hcCCC
Confidence 222 333443 443 333345789999993234699999999999999999888753 24789999999988 57899
Q ss_pred HHHHHHHHHHHH
Q 010136 347 MRKALSVCRSAI 358 (517)
Q Consensus 347 ~R~al~ll~~A~ 358 (517)
+|..+..+...+
T Consensus 307 ir~L~g~l~~l~ 318 (445)
T PRK12422 307 VKSLLHALTLLA 318 (445)
T ss_pred HHHHHHHHHHHH
Confidence 999888877664
No 115
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.63 E-value=9.2e-15 Score=137.90 Aligned_cols=211 Identities=18% Similarity=0.214 Sum_probs=130.9
Q ss_pred cCcCCCCCCCC-CcHHHHHHHHHHHHHhhcc--CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCC
Q 010136 117 LHVSTAPSTIV-CREDEQKKVLEFCKKNLEE--EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCT 193 (517)
Q Consensus 117 l~~~~~p~~l~-gRe~e~~~l~~~L~~~l~~--~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~ 193 (517)
|++.|..++++ |-..+. ........... ...+.+||||++|+|||+|++++++++..... ...++|+++.
T Consensus 1 ln~~~tFdnfv~g~~N~~--a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~-----~~~v~y~~~~ 73 (219)
T PF00308_consen 1 LNPKYTFDNFVVGESNEL--AYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHP-----GKRVVYLSAE 73 (219)
T ss_dssp S-TT-SCCCS--TTTTHH--HHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCT-----TS-EEEEEHH
T ss_pred CCCCCccccCCcCCcHHH--HHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccc-----cccceeecHH
Confidence 45667777764 543332 22222222222 22457999999999999999999998875321 2468999874
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC--chHHHHHhccCCCCCC
Q 010136 194 SLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD--RAVLHDLFMLTTFPFS 271 (517)
Q Consensus 194 ~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~--~~~L~~l~~~~~~~~~ 271 (517)
. +...+...+.. .. ...+...+. ..-+|+||++|.+..+. |+.|+.+++.....+.
T Consensus 74 ~------f~~~~~~~~~~-------~~-~~~~~~~~~--------~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k 131 (219)
T PF00308_consen 74 E------FIREFADALRD-------GE-IEEFKDRLR--------SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGK 131 (219)
T ss_dssp H------HHHHHHHHHHT-------TS-HHHHHHHHC--------TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTS
T ss_pred H------HHHHHHHHHHc-------cc-chhhhhhhh--------cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCC
Confidence 4 44444444421 11 333444332 34699999999998754 6788888877543444
Q ss_pred cEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHH
Q 010136 272 RFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKAL 351 (517)
Q Consensus 272 ~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al 351 (517)
++ |+.....+.-...+.+++.||..+.-.+.+.+++.+++..||+.++.... -.+++++++++++ ...+|+|...
T Consensus 132 ~l-i~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~-~~l~~~v~~~l~~---~~~~~~r~L~ 206 (219)
T PF00308_consen 132 QL-ILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERG-IELPEEVIEYLAR---RFRRDVRELE 206 (219)
T ss_dssp EE-EEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT---S-HHHHHHHHH---HTTSSHHHHH
T ss_pred eE-EEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhC-CCCcHHHHHHHHH---hhcCCHHHHH
Confidence 43 33323433333446789999855567999999999999999999887432 3689999999988 4688999888
Q ss_pred HHHHHHHHHH
Q 010136 352 SVCRSAIEIL 361 (517)
Q Consensus 352 ~ll~~A~~~a 361 (517)
.++.+....+
T Consensus 207 ~~l~~l~~~~ 216 (219)
T PF00308_consen 207 GALNRLDAYA 216 (219)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8887765443
No 116
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.63 E-value=1.2e-14 Score=138.64 Aligned_cols=185 Identities=16% Similarity=0.122 Sum_probs=128.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHH
Q 010136 147 EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQ 226 (517)
Q Consensus 147 ~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~ 226 (517)
....+++|+|++|||||++++++++++... + ..+++++|...... +
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~----~---~~~~~i~~~~~~~~----------~----------------- 85 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYG----G---RNARYLDAASPLLA----------F----------------- 85 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhC----C---CcEEEEehHHhHHH----------H-----------------
Confidence 346789999999999999999999876431 2 35788888653110 0
Q ss_pred HHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCC
Q 010136 227 NLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRA 306 (517)
Q Consensus 227 ~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p 306 (517)
. + .....+|+|||+|.+....+..|+.+++..... ...++|.+++.......+.+.+.||.-....+.++|
T Consensus 86 ~-~-------~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~-~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~p 156 (227)
T PRK08903 86 D-F-------DPEAELYAVDDVERLDDAQQIALFNLFNRVRAH-GQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKP 156 (227)
T ss_pred h-h-------cccCCEEEEeChhhcCchHHHHHHHHHHHHHHc-CCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecC
Confidence 0 1 112358999999999777778888888653322 233344434432222235577777721236999999
Q ss_pred CCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhh
Q 010136 307 YSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQA 386 (517)
Q Consensus 307 ~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (517)
++.++...++....... ...+++++++++++ ...||+|.+.++++.....|...++
T Consensus 157 l~~~~~~~~l~~~~~~~-~v~l~~~al~~L~~---~~~gn~~~l~~~l~~l~~~~~~~~~-------------------- 212 (227)
T PRK08903 157 LSDADKIAALKAAAAER-GLQLADEVPDYLLT---HFRRDMPSLMALLDALDRYSLEQKR-------------------- 212 (227)
T ss_pred CCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHH---hccCCHHHHHHHHHHHHHHHHHhCC--------------------
Confidence 99999888888655432 35789999999988 5899999999999886554444332
Q ss_pred hhhhhccCccccHHHHHHHHH
Q 010136 387 ASAFEFFNSQVRVDHMAVALS 407 (517)
Q Consensus 387 ~~~~~~~~~~Vt~~~v~~a~~ 407 (517)
.||...+.+++.
T Consensus 213 ---------~i~~~~~~~~l~ 224 (227)
T PRK08903 213 ---------PVTLPLLREMLA 224 (227)
T ss_pred ---------CCCHHHHHHHHh
Confidence 699999998875
No 117
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.62 E-value=1e-14 Score=158.42 Aligned_cols=219 Identities=15% Similarity=0.158 Sum_probs=144.5
Q ss_pred CCCCcHHHHHHHHHHHHHh--------hccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCC
Q 010136 125 TIVCREDEQKKVLEFCKKN--------LEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLT 196 (517)
Q Consensus 125 ~l~gRe~e~~~l~~~L~~~--------l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~ 196 (517)
++.|.+...+++.+.+... +....+.+++|+||||||||++++.++.++. +.++.+++..+.
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~----------~~f~~is~~~~~ 222 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK----------VPFFTISGSDFV 222 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC----------CCEEEEehHHhH
Confidence 4566666666665554321 1122356799999999999999999987764 468888887642
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCc-----------hHHHHHhcc
Q 010136 197 NTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDR-----------AVLHDLFML 265 (517)
Q Consensus 197 s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~-----------~~L~~l~~~ 265 (517)
..+. +.. ...++.+|.. .....|+||||||+|.+..... ..+..++..
T Consensus 223 ~~~~-----------------g~~-~~~~~~~f~~---a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~ 281 (644)
T PRK10733 223 EMFV-----------------GVG-ASRVRDMFEQ---AKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVE 281 (644)
T ss_pred Hhhh-----------------ccc-HHHHHHHHHH---HHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHh
Confidence 2111 111 3456666663 2345789999999999965321 245555433
Q ss_pred C--CCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHH
Q 010136 266 T--TFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAA 343 (517)
Q Consensus 266 ~--~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~ 343 (517)
. ......+++|++|| .++.+++++.+.....+.|.|+.++.+++.+||...+...+. -.+..+..+|+. .
T Consensus 282 mdg~~~~~~vivIaaTN---~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l--~~~~d~~~la~~---t 353 (644)
T PRK10733 282 MDGFEGNEGIIVIAATN---RPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPL--APDIDAAIIARG---T 353 (644)
T ss_pred hhcccCCCCeeEEEecC---ChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCC--CCcCCHHHHHhh---C
Confidence 1 12345799999999 577888888863223469999999999999999988775421 112224556653 3
Q ss_pred hC-CHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhc
Q 010136 344 SG-DMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTF 410 (517)
Q Consensus 344 ~G-d~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~ 410 (517)
.| .....-++|+.|...|.+.+.. .|++.|+..|+..+.
T Consensus 354 ~G~sgadl~~l~~eAa~~a~r~~~~----------------------------~i~~~d~~~a~~~v~ 393 (644)
T PRK10733 354 PGFSGADLANLVNEAALFAARGNKR----------------------------VVSMVEFEKAKDKIM 393 (644)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCC----------------------------cccHHHHHHHHHHHh
Confidence 44 2344457899998888776554 688888888887664
No 118
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.61 E-value=1.1e-14 Score=161.58 Aligned_cols=247 Identities=17% Similarity=0.170 Sum_probs=152.7
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHhhcc---------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEE
Q 010136 120 STAPSTIVCREDEQKKVLEFCKKNLEE---------EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSI 190 (517)
Q Consensus 120 ~~~p~~l~gRe~e~~~l~~~L~~~l~~---------~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~v 190 (517)
....+++.|.+++++.+.+++...+.. ..+.+++|+||||||||++++++++++. ..++++
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~----------~~~i~i 243 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG----------AYFISI 243 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC----------CeEEEE
Confidence 344567999999999999887643221 3467899999999999999999988764 368888
Q ss_pred eCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCc--------hHHHHH
Q 010136 191 NCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDR--------AVLHDL 262 (517)
Q Consensus 191 n~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~--------~~L~~l 262 (517)
++..+.+.+. + ...+.+..+|... ....+.||||||+|.+..... ..+..|
T Consensus 244 ~~~~i~~~~~-----------------g-~~~~~l~~lf~~a---~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~L 302 (733)
T TIGR01243 244 NGPEIMSKYY-----------------G-ESEERLREIFKEA---EENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQL 302 (733)
T ss_pred ecHHHhcccc-----------------c-HHHHHHHHHHHHH---HhcCCcEEEeehhhhhcccccCCcchHHHHHHHHH
Confidence 8865432211 1 1245677777632 245678999999999975432 233333
Q ss_pred hccC--CCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHH
Q 010136 263 FMLT--TFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKV 340 (517)
Q Consensus 263 ~~~~--~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~ 340 (517)
+.+. ......++||+++|. ++.+++.+.+.......+.|+.++.++..+||+.....+. ..++..++.+++.+
T Consensus 303 l~~ld~l~~~~~vivI~atn~---~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~--l~~d~~l~~la~~t 377 (733)
T TIGR01243 303 LTLMDGLKGRGRVIVIGATNR---PDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMP--LAEDVDLDKLAEVT 377 (733)
T ss_pred HHHhhccccCCCEEEEeecCC---hhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCC--CccccCHHHHHHhC
Confidence 3332 123467899999994 5667888776312246899999999999999997665431 22344466777654
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccCh
Q 010136 341 AAASGDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSP 413 (517)
Q Consensus 341 ~~~~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~ 413 (517)
.++.| .....+|+.|...+.+........... ....+. .......|+.+|+..|+..+..+.
T Consensus 378 ~G~~g--adl~~l~~~a~~~al~r~~~~~~~~~~---~~~i~~------~~~~~~~v~~~df~~Al~~v~ps~ 439 (733)
T TIGR01243 378 HGFVG--ADLAALAKEAAMAALRRFIREGKINFE---AEEIPA------EVLKELKVTMKDFMEALKMVEPSA 439 (733)
T ss_pred CCCCH--HHHHHHHHHHHHHHHHHHhhccccccc---cccccc------hhcccccccHHHHHHHHhhccccc
Confidence 33333 222346777776655443221000000 000000 000111588888888888776553
No 119
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.59 E-value=2.1e-14 Score=160.92 Aligned_cols=213 Identities=14% Similarity=0.172 Sum_probs=143.6
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFS 203 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~ 203 (517)
+.++||++++.++...|.. ...++++|+||||||||++++.++..+........+....++.++...+.....
T Consensus 173 ~~~igr~~ei~~~~~~l~r----~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~--- 245 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSR----RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAK--- 245 (852)
T ss_pred CcCCCcHHHHHHHHHHHhc----CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcch---
Confidence 4699999998888887654 356789999999999999999999887531100011123566665433210000
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC----chHHHHHhccCCCCCCcEEEEEEE
Q 010136 204 KILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD----RAVLHDLFMLTTFPFSRFILIGIA 279 (517)
Q Consensus 204 ~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~----~~~L~~l~~~~~~~~~~v~lI~ia 279 (517)
. .....+.+..+|.... ....+.||||||+|.|.... .....+++. +......+.+||+|
T Consensus 246 ------------~-~g~~e~~l~~~l~~~~--~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk-~~l~~g~i~~IgaT 309 (852)
T TIGR03346 246 ------------Y-RGEFEERLKAVLNEVT--KSEGQIILFIDELHTLVGAGKAEGAMDAGNMLK-PALARGELHCIGAT 309 (852)
T ss_pred ------------h-hhhHHHHHHHHHHHHH--hcCCCeEEEeccHHHhhcCCCCcchhHHHHHhc-hhhhcCceEEEEeC
Confidence 0 0112455666665321 23457999999999997421 112233442 23356789999988
Q ss_pred CCCCcch--hhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhh---ccCCCChhHHHHHHHHHHHHhCC---HHHHH
Q 010136 280 NAIDLAD--RFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMEL---SYIVFQPQALELCARKVAAASGD---MRKAL 351 (517)
Q Consensus 280 n~~~~~~--~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~---~~~~~~~~ai~~ia~~~~~~~Gd---~R~al 351 (517)
|..++.. .+++.+.+| | +.|.++.++.++...||+.....+ ....+.++++..++.....+-.| +.+|+
T Consensus 310 t~~e~r~~~~~d~al~rR-f--~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAi 386 (852)
T TIGR03346 310 TLDEYRKYIEKDAALERR-F--QPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAI 386 (852)
T ss_pred cHHHHHHHhhcCHHHHhc-C--CEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHH
Confidence 8544322 358999998 7 578899999999999998654432 23457889999988877777777 89999
Q ss_pred HHHHHHHHHHH
Q 010136 352 SVCRSAIEILE 362 (517)
Q Consensus 352 ~ll~~A~~~a~ 362 (517)
++++.|+..+.
T Consensus 387 dlld~a~a~~~ 397 (852)
T TIGR03346 387 DLIDEAAARIR 397 (852)
T ss_pred HHHHHHHHHHH
Confidence 99999886543
No 120
>PRK04132 replication factor C small subunit; Provisional
Probab=99.58 E-value=1.4e-13 Score=150.45 Aligned_cols=170 Identities=17% Similarity=0.211 Sum_probs=126.6
Q ss_pred eEEEEc--CCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH
Q 010136 151 SLYVCG--CPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNL 228 (517)
Q Consensus 151 ~lli~G--~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~ 228 (517)
+-++.| |.+.||||+|+++++++... ++. ..++++|+++..+...+ +.+...+
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~----~~~-~~~lElNASd~rgid~I-R~iIk~~------------------- 620 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGE----NWR-HNFLELNASDERGINVI-REKVKEF------------------- 620 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcc----ccc-CeEEEEeCCCcccHHHH-HHHHHHH-------------------
Confidence 345678 99999999999999997431 111 36999999986555442 2222221
Q ss_pred HHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCC
Q 010136 229 YSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYS 308 (517)
Q Consensus 229 ~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~ 308 (517)
...... ...+..|+||||+|.|....|++|..+++.+ ..++.+|+++|. +..+.+.++|| | +.+.|.|++
T Consensus 621 a~~~~~-~~~~~KVvIIDEaD~Lt~~AQnALLk~lEep---~~~~~FILi~N~---~~kIi~tIrSR-C--~~i~F~~ls 690 (846)
T PRK04132 621 ARTKPI-GGASFKIIFLDEADALTQDAQQALRRTMEMF---SSNVRFILSCNY---SSKIIEPIQSR-C--AIFRFRPLR 690 (846)
T ss_pred HhcCCc-CCCCCEEEEEECcccCCHHHHHHHHHHhhCC---CCCeEEEEEeCC---hhhCchHHhhh-c--eEEeCCCCC
Confidence 110000 1123579999999999988889999888764 357778888994 67788999999 7 799999999
Q ss_pred HHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 010136 309 KDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRSAIE 359 (517)
Q Consensus 309 ~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~ 359 (517)
.+++..+|...+... ...++++++..+++ .+.||+|.|+++++.+..
T Consensus 691 ~~~i~~~L~~I~~~E-gi~i~~e~L~~Ia~---~s~GDlR~AIn~Lq~~~~ 737 (846)
T PRK04132 691 DEDIAKRLRYIAENE-GLELTEEGLQAILY---IAEGDMRRAINILQAAAA 737 (846)
T ss_pred HHHHHHHHHHHHHhc-CCCCCHHHHHHHHH---HcCCCHHHHHHHHHHHHH
Confidence 999999998766532 23578999999887 589999999999988763
No 121
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.58 E-value=1.1e-13 Score=149.20 Aligned_cols=244 Identities=17% Similarity=0.168 Sum_probs=150.6
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCC-CHHHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLT-NTSEIF 202 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~-s~~~i~ 202 (517)
+.++|++..+..+...+ ....+.+++|+||||||||++++.+.+...............++.++|..+. +...+.
T Consensus 154 ~~iiGqs~~~~~l~~~i----a~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~ 229 (615)
T TIGR02903 154 SEIVGQERAIKALLAKV----ASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVT 229 (615)
T ss_pred HhceeCcHHHHHHHHHH----hcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHh
Confidence 57899999888765554 2345678999999999999999999876543211100112368999997753 222221
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHh--------hhccCCCceEEEEEeCcchhcccCchHHHHHhccCC-------
Q 010136 203 SKILLKLQPRKKLNGSTSPLQYLQNLYSQ--------KLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTT------- 267 (517)
Q Consensus 203 ~~i~~~l~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~------- 267 (517)
..++..+ .........+.+.. ... ......+|||||++.|....|..|..+++...
T Consensus 230 ~~llg~~--------~~~~~~~a~~~l~~~gl~~~~~g~v-~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~ 300 (615)
T TIGR02903 230 NPLLGSV--------HDPIYQGARRDLAETGVPEPKTGLV-TDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSY 300 (615)
T ss_pred HHhcCCc--------cHHHHHHHHHHHHHcCCCchhcCch-hhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecce
Confidence 1111100 00000001111110 000 01123489999999998877777776664311
Q ss_pred ------------------CCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCC
Q 010136 268 ------------------FPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQ 329 (517)
Q Consensus 268 ------------------~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~ 329 (517)
.....+++|++++. .++.+.+.+++| | ..+.|+||+.+++..|+...+.... ..++
T Consensus 301 ~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~--~~~~l~~aLrSR-~--~~i~~~pls~edi~~Il~~~a~~~~-v~ls 374 (615)
T TIGR02903 301 YDPDDPNVPKYIKKLFEEGAPADFVLIGATTR--DPEEINPALRSR-C--AEVFFEPLTPEDIALIVLNAAEKIN-VHLA 374 (615)
T ss_pred eccCCcccchhhhhhcccCccceEEEEEeccc--cccccCHHHHhc-e--eEEEeCCCCHHHHHHHHHHHHHHcC-CCCC
Confidence 12235677765543 345678889998 7 5889999999999999998887542 3578
Q ss_pred hhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHh
Q 010136 330 PQALELCARKVAAASGDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNT 409 (517)
Q Consensus 330 ~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~ 409 (517)
+++++.+++ ++.+.|++++++..+..++..+....... ... ..|+.+|+.+++..-
T Consensus 375 ~eal~~L~~----ys~~gRraln~L~~~~~~~~~~~~~~~~~------~~~--------------~~I~~edv~~~l~~~ 430 (615)
T TIGR02903 375 AGVEELIAR----YTIEGRKAVNILADVYGYALYRAAEAGKE------NDK--------------VTITQDDVYEVIQIS 430 (615)
T ss_pred HHHHHHHHH----CCCcHHHHHHHHHHHHHHHHHHHHHhccC------CCC--------------eeECHHHHHHHhCCC
Confidence 999888876 45688999999988876653322110000 000 168999999988764
Q ss_pred c
Q 010136 410 F 410 (517)
Q Consensus 410 ~ 410 (517)
.
T Consensus 431 r 431 (615)
T TIGR02903 431 R 431 (615)
T ss_pred c
Confidence 4
No 122
>PRK06620 hypothetical protein; Validated
Probab=99.56 E-value=8.1e-14 Score=130.83 Aligned_cols=150 Identities=12% Similarity=0.162 Sum_probs=101.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLY 229 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~ 229 (517)
+.++||||||+|||++++++++... ..+++.... ....+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~------------~~~~~~~~~-----------------------------~~~~~ 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN------------AYIIKDIFF-----------------------------NEEIL 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC------------CEEcchhhh-----------------------------chhHH
Confidence 6799999999999999998765431 122221000 00111
Q ss_pred HhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCH
Q 010136 230 SQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSK 309 (517)
Q Consensus 230 ~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~ 309 (517)
. ...+|+|||||.+ .+..|..+++.....+ +.+||+.+...... .+ ++++||....-.+.+.+++.
T Consensus 84 ~--------~~d~lliDdi~~~---~~~~lf~l~N~~~e~g-~~ilits~~~p~~l-~l-~~L~SRl~~gl~~~l~~pd~ 149 (214)
T PRK06620 84 E--------KYNAFIIEDIENW---QEPALLHIFNIINEKQ-KYLLLTSSDKSRNF-TL-PDLSSRIKSVLSILLNSPDD 149 (214)
T ss_pred h--------cCCEEEEeccccc---hHHHHHHHHHHHHhcC-CEEEEEcCCCcccc-ch-HHHHHHHhCCceEeeCCCCH
Confidence 1 1247899999965 2356667766544333 45555544433222 25 89999933345899999999
Q ss_pred HHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 010136 310 DQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRSAI 358 (517)
Q Consensus 310 ~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~ 358 (517)
+++..+++..+... .-.+++++++++++ ...||+|.+++++....
T Consensus 150 ~~~~~~l~k~~~~~-~l~l~~ev~~~L~~---~~~~d~r~l~~~l~~l~ 194 (214)
T PRK06620 150 ELIKILIFKHFSIS-SVTISRQIIDFLLV---NLPREYSKIIEILENIN 194 (214)
T ss_pred HHHHHHHHHHHHHc-CCCCCHHHHHHHHH---HccCCHHHHHHHHHHHH
Confidence 99999998776532 24789999999988 57999999999988754
No 123
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.55 E-value=6.2e-14 Score=140.85 Aligned_cols=208 Identities=17% Similarity=0.209 Sum_probs=131.8
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCC-CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEK-AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIF 202 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~-~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~ 202 (517)
+.++|+++..+.+...+. .++ +..++|+||+|+|||++++.+++.+.+.......+ ......|... ..+
T Consensus 23 ~~l~Gh~~a~~~L~~a~~----~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~--~~~~~~~~~c----~~c 92 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYR----EGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAP--ETLADPDPAS----PVW 92 (351)
T ss_pred hhccCcHHHHHHHHHHHH----cCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCc--cccCCCCCCC----HHH
Confidence 368999997776666654 344 44599999999999999999999886521000000 1111122111 122
Q ss_pred HHHHHHhCCC---------CC--CCCCCCHHHHHH---HHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCC
Q 010136 203 SKILLKLQPR---------KK--LNGSTSPLQYLQ---NLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF 268 (517)
Q Consensus 203 ~~i~~~l~~~---------~~--~~~~~~~~~~l~---~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~ 268 (517)
..+...-... .. .....-..+.++ +.|.. ....++..|+||||+|.|....++.|...++.+
T Consensus 93 ~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~--~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEp-- 168 (351)
T PRK09112 93 RQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQ--TSGDGNWRIVIIDPADDMNRNAANAILKTLEEP-- 168 (351)
T ss_pred HHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhh--ccccCCceEEEEEchhhcCHHHHHHHHHHHhcC--
Confidence 2222211100 00 000111133343 33331 223456789999999999877778888877664
Q ss_pred CCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHH
Q 010136 269 PFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMR 348 (517)
Q Consensus 269 ~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R 348 (517)
..+..+|.+++. +.++.+.++|| | ..+.|+|++.+++.++|...... .. ++++++..+++ .+.|++|
T Consensus 169 -p~~~~fiLit~~---~~~llptIrSR-c--~~i~l~pl~~~~~~~~L~~~~~~--~~-~~~~~~~~i~~---~s~G~pr 235 (351)
T PRK09112 169 -PARALFILISHS---SGRLLPTIRSR-C--QPISLKPLDDDELKKALSHLGSS--QG-SDGEITEALLQ---RSKGSVR 235 (351)
T ss_pred -CCCceEEEEECC---hhhccHHHHhh-c--cEEEecCCCHHHHHHHHHHhhcc--cC-CCHHHHHHHHH---HcCCCHH
Confidence 345556666763 56778999999 7 69999999999999999974322 12 77888877766 5789999
Q ss_pred HHHHHHHHHH
Q 010136 349 KALSVCRSAI 358 (517)
Q Consensus 349 ~al~ll~~A~ 358 (517)
.|++++....
T Consensus 236 ~Al~ll~~~~ 245 (351)
T PRK09112 236 KALLLLNYGG 245 (351)
T ss_pred HHHHHHhcCc
Confidence 9999986543
No 124
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.55 E-value=1.7e-14 Score=125.03 Aligned_cols=119 Identities=24% Similarity=0.337 Sum_probs=86.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHh
Q 010136 152 LYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQ 231 (517)
Q Consensus 152 lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~ 231 (517)
++|+||||||||++++.+++.+. ++++++++..+.+.+ .....+.+...|.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~----------~~~~~i~~~~~~~~~------------------~~~~~~~i~~~~~~ 52 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG----------FPFIEIDGSELISSY------------------AGDSEQKIRDFFKK 52 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT----------SEEEEEETTHHHTSS------------------TTHHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcc----------ccccccccccccccc------------------cccccccccccccc
Confidence 68999999999999999999874 579999998764221 12235566677764
Q ss_pred hhccCCCceEEEEEeCcchhcccC-----------chHHHHHhccCCCCCCcEEEEEEECCCCcchhhccccc-ccCCCc
Q 010136 232 KLHSSVMKMMLIIADELDYLITRD-----------RAVLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQ-SMNCKP 299 (517)
Q Consensus 232 ~~~~~~~~~~vI~iDEiD~L~~~~-----------~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~-sr~~~~ 299 (517)
... ...+.||+|||+|.+.... ...|+..++.......++++|+++|. .+.+++.+. +| | .
T Consensus 53 ~~~--~~~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~---~~~i~~~l~~~r-f-~ 125 (132)
T PF00004_consen 53 AKK--SAKPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS---PDKIDPALLRSR-F-D 125 (132)
T ss_dssp HHH--TSTSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS---GGGSCHHHHSTT-S-E
T ss_pred ccc--cccceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC---hhhCCHhHHhCC-C-c
Confidence 221 1247999999999998876 34566666665555578999999995 677888888 76 5 3
Q ss_pred eEEEeC
Q 010136 300 LVVTFR 305 (517)
Q Consensus 300 ~~i~f~ 305 (517)
..|.|+
T Consensus 126 ~~i~~~ 131 (132)
T PF00004_consen 126 RRIEFP 131 (132)
T ss_dssp EEEEE-
T ss_pred EEEEcC
Confidence 466664
No 125
>PRK09087 hypothetical protein; Validated
Probab=99.55 E-value=1.3e-13 Score=130.50 Aligned_cols=190 Identities=11% Similarity=0.039 Sum_probs=127.2
Q ss_pred HHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCC
Q 010136 137 LEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLN 216 (517)
Q Consensus 137 ~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~ 216 (517)
..++.... +...+.++|+|++|+|||++++.++... .+.|++...+..
T Consensus 33 ~~~l~~~~-~~~~~~l~l~G~~GsGKThLl~~~~~~~------------~~~~i~~~~~~~------------------- 80 (226)
T PRK09087 33 VSLVDHWP-NWPSPVVVLAGPVGSGKTHLASIWREKS------------DALLIHPNEIGS------------------- 80 (226)
T ss_pred HHHHHhcc-cCCCCeEEEECCCCCCHHHHHHHHHHhc------------CCEEecHHHcch-------------------
Confidence 33454433 2334569999999999999999887642 234555532210
Q ss_pred CCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccC
Q 010136 217 GSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMN 296 (517)
Q Consensus 217 ~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~ 296 (517)
+.+..+. . -+|+||++|.+. ..++.|+.+++.....+ +.+||++...........++++||.
T Consensus 81 ------~~~~~~~-------~---~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g-~~ilits~~~p~~~~~~~~dL~SRl 142 (226)
T PRK09087 81 ------DAANAAA-------E---GPVLIEDIDAGG-FDETGLFHLINSVRQAG-TSLLMTSRLWPSSWNVKLPDLKSRL 142 (226)
T ss_pred ------HHHHhhh-------c---CeEEEECCCCCC-CCHHHHHHHHHHHHhCC-CeEEEECCCChHHhccccccHHHHH
Confidence 0011111 1 378899999874 45777888887654333 4445543332222222468899984
Q ss_pred CCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 010136 297 CKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRSAIEILEAEMRESVSKMNSAS 376 (517)
Q Consensus 297 ~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~ 376 (517)
-....+.+.+++.+++..||+.++... .-.+++++++++++. ..|++|.++.++......+...++
T Consensus 143 ~~gl~~~l~~pd~e~~~~iL~~~~~~~-~~~l~~ev~~~La~~---~~r~~~~l~~~l~~L~~~~~~~~~---------- 208 (226)
T PRK09087 143 KAATVVEIGEPDDALLSQVIFKLFADR-QLYVDPHVVYYLVSR---MERSLFAAQTIVDRLDRLALERKS---------- 208 (226)
T ss_pred hCCceeecCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHHHhCC----------
Confidence 455699999999999999999888743 347899999999984 669999988887665544444332
Q ss_pred ccccchhhhhhhhhhccCccccHHHHHHHHHHh
Q 010136 377 AEQGLFDQQAASAFEFFNSQVRVDHMAVALSNT 409 (517)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~ 409 (517)
.||...+.++++.+
T Consensus 209 -------------------~it~~~~~~~l~~~ 222 (226)
T PRK09087 209 -------------------RITRALAAEVLNEM 222 (226)
T ss_pred -------------------CCCHHHHHHHHHhh
Confidence 69999999998765
No 126
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.54 E-value=2e-13 Score=138.94 Aligned_cols=202 Identities=17% Similarity=0.250 Sum_probs=125.5
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhc------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCC
Q 010136 123 PSTIVCREDEQKKVLEFCKKNLE------EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLT 196 (517)
Q Consensus 123 p~~l~gRe~e~~~l~~~L~~~l~------~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~ 196 (517)
+++++|.+..++.|...+..... ..-+..++|+||||+|||++++.+++.+...... .-.|....
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~---------~~~Cg~C~ 74 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD---------EPGCGECR 74 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC---------CCCCCCCH
Confidence 45789999988888888765321 0135568999999999999999999987642100 00111111
Q ss_pred CHHHHHHHHHHHhCCCC---CCCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCc
Q 010136 197 NTSEIFSKILLKLQPRK---KLNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSR 272 (517)
Q Consensus 197 s~~~i~~~i~~~l~~~~---~~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~ 272 (517)
+...+. ..-.... .........+.++.++... .....++..|+||||+|.|....++.|..+++.+ + ..
T Consensus 75 ~C~~~~----~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep--~-~~ 147 (394)
T PRK07940 75 ACRTVL----AGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEP--P-PR 147 (394)
T ss_pred HHHHHh----cCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcC--C-CC
Confidence 111110 0000000 0000011134455555431 1122345679999999999877777787777654 2 33
Q ss_pred EEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHH
Q 010136 273 FILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALS 352 (517)
Q Consensus 273 v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ 352 (517)
.++|.+|++ ++.+.|.++|| | +.+.|++++.+++.++|.... .++++....+++ .+.|++..|+.
T Consensus 148 ~~fIL~a~~---~~~llpTIrSR-c--~~i~f~~~~~~~i~~~L~~~~------~~~~~~a~~la~---~s~G~~~~A~~ 212 (394)
T PRK07940 148 TVWLLCAPS---PEDVLPTIRSR-C--RHVALRTPSVEAVAEVLVRRD------GVDPETARRAAR---ASQGHIGRARR 212 (394)
T ss_pred CeEEEEECC---hHHChHHHHhh-C--eEEECCCCCHHHHHHHHHHhc------CCCHHHHHHHHH---HcCCCHHHHHH
Confidence 444444553 67788999999 7 799999999999998887432 245666666665 57899999987
Q ss_pred HHH
Q 010136 353 VCR 355 (517)
Q Consensus 353 ll~ 355 (517)
++.
T Consensus 213 l~~ 215 (394)
T PRK07940 213 LAT 215 (394)
T ss_pred Hhc
Confidence 763
No 127
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.4e-14 Score=136.63 Aligned_cols=222 Identities=18% Similarity=0.197 Sum_probs=151.7
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhcc---------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCC
Q 010136 123 PSTIVCREDEQKKVLEFCKKNLEE---------EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCT 193 (517)
Q Consensus 123 p~~l~gRe~e~~~l~~~L~~~l~~---------~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~ 193 (517)
.+.+-|--.++.++.+.+.-.+.. ..|..++||||||||||.++++|+..+. +.++.+.+.
T Consensus 131 ~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg----------~nfl~v~ss 200 (388)
T KOG0651|consen 131 FENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMG----------VNFLKVVSS 200 (388)
T ss_pred HHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcC----------CceEEeeHh
Confidence 356777777777777776443321 2366899999999999999999998875 468888887
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC--------chH---HHHH
Q 010136 194 SLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD--------RAV---LHDL 262 (517)
Q Consensus 194 ~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~--------~~~---L~~l 262 (517)
.+.+.+. |.+ ...+++.|.. ++...+||||+||||....+. +++ |-+|
T Consensus 201 ~lv~kyi-----------------GEs-aRlIRemf~y---A~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeL 259 (388)
T KOG0651|consen 201 ALVDKYI-----------------GES-ARLIRDMFRY---AREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMEL 259 (388)
T ss_pred hhhhhhc-----------------ccH-HHHHHHHHHH---HhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHH
Confidence 7755554 443 7788888873 346678999999999987652 233 4444
Q ss_pred hcc-C-CCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhc-cCCCChhHHHHHHHH
Q 010136 263 FML-T-TFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELS-YIVFQPQALELCARK 339 (517)
Q Consensus 263 ~~~-~-~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~-~~~~~~~ai~~ia~~ 339 (517)
++- . .....+|-+|+++|+ ++.|+|.|.+.+.-.+.+..+-++......|++-..+.+. .+.++++++-.+
T Consensus 260 lnqmdgfd~l~rVk~ImatNr---pdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~--- 333 (388)
T KOG0651|consen 260 LNQMDGFDTLHRVKTIMATNR---PDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKL--- 333 (388)
T ss_pred HHhhccchhcccccEEEecCC---ccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHH---
Confidence 432 1 123467889999996 6667888877533445667776676666666664444221 245666655444
Q ss_pred HHHHhC-CHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccC
Q 010136 340 VAAASG-DMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKS 412 (517)
Q Consensus 340 ~~~~~G-d~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~ 412 (517)
+....| |. .+.|++|...|..+.+. .+-++++..++.++...
T Consensus 334 ~d~f~gad~---rn~~tEag~Fa~~~~~~----------------------------~vl~Ed~~k~vrk~~~~ 376 (388)
T KOG0651|consen 334 VDGFNGADL---RNVCTEAGMFAIPEERD----------------------------EVLHEDFMKLVRKQADA 376 (388)
T ss_pred HhccChHHH---hhhcccccccccchhhH----------------------------HHhHHHHHHHHHHHHHH
Confidence 334455 43 37999999888887777 78888888888776543
No 128
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=4.4e-14 Score=141.52 Aligned_cols=241 Identities=19% Similarity=0.200 Sum_probs=149.6
Q ss_pred CCCCcHHHHHHHHHHHH--Hhh-----c---cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCC
Q 010136 125 TIVCREDEQKKVLEFCK--KNL-----E---EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTS 194 (517)
Q Consensus 125 ~l~gRe~e~~~l~~~L~--~~l-----~---~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~ 194 (517)
.+-|.++|+..|...-. +.+ . -..-.++++|||||||||.+||.+..-|... .---||++.
T Consensus 222 GIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNAr---------ePKIVNGPe 292 (744)
T KOG0741|consen 222 GIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAR---------EPKIVNGPE 292 (744)
T ss_pred ccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCC---------CCcccCcHH
Confidence 47788888887765421 111 1 1234579999999999999999998887642 123477777
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHh-----hhccCCCceEEEEEeCcchhcccC----------chHH
Q 010136 195 LTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQ-----KLHSSVMKMMLIIADELDYLITRD----------RAVL 259 (517)
Q Consensus 195 ~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~vI~iDEiD~L~~~~----------~~~L 259 (517)
..++|. |.+ ++.++++|.+ ........-.||++||+|.++..+ ..++
T Consensus 293 IL~KYV-----------------GeS-E~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VV 354 (744)
T KOG0741|consen 293 ILNKYV-----------------GES-EENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVV 354 (744)
T ss_pred HHHHhh-----------------ccc-HHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHH
Confidence 655554 444 7888888875 233345667899999999998652 3566
Q ss_pred HHHhccCC--CCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHH---HHhhhccCCCChhH-H
Q 010136 260 HDLFMLTT--FPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQE---RLMELSYIVFQPQA-L 333 (517)
Q Consensus 260 ~~l~~~~~--~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~---rl~~~~~~~~~~~a-i 333 (517)
.+|+.... ..-.++.|||.||..|+ ++.+|.+.......+...-++..-..+||+- |.... ..+++++ +
T Consensus 355 NQLLsKmDGVeqLNNILVIGMTNR~Dl---IDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~--~~l~~dVdl 429 (744)
T KOG0741|consen 355 NQLLSKMDGVEQLNNILVIGMTNRKDL---IDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMREN--NKLSADVDL 429 (744)
T ss_pred HHHHHhcccHHhhhcEEEEeccCchhh---HHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhc--CCCCCCcCH
Confidence 66664421 12248999999997554 5666666532234566667777766665554 44322 3455444 7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccC
Q 010136 334 ELCARKVAAASGDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKS 412 (517)
Q Consensus 334 ~~ia~~~~~~~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~ 412 (517)
+.+|+.+-..+|- ..--+.+.|...|..+....... . .... ....+-+|+++||..|+.++.+.
T Consensus 430 ~elA~lTKNfSGA--EleglVksA~S~A~nR~vk~~~~---~--~~~~--------~~~e~lkV~r~DFl~aL~dVkPA 493 (744)
T KOG0741|consen 430 KELAALTKNFSGA--ELEGLVKSAQSFAMNRHVKAGGK---V--EVDP--------VAIENLKVTRGDFLNALEDVKPA 493 (744)
T ss_pred HHHHHHhcCCchh--HHHHHHHHHHHHHHHhhhccCcc---e--ecCc--------hhhhheeecHHHHHHHHHhcCcc
Confidence 7788776666664 12246677777776654331100 0 0000 00111279999999999876653
No 129
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.53 E-value=1.8e-13 Score=131.49 Aligned_cols=210 Identities=14% Similarity=0.146 Sum_probs=135.3
Q ss_pred hccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCH-H
Q 010136 144 LEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSP-L 222 (517)
Q Consensus 144 l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~-~ 222 (517)
-...+.++++|+|++|.|||++++.+.+....... .+...+.++++.+....+...+|..|+.+++........... .
T Consensus 56 P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d-~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~ 134 (302)
T PF05621_consen 56 PKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSD-EDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLE 134 (302)
T ss_pred CcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCC-CCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHH
Confidence 34456789999999999999999999876543222 222346799999999999999999999999887655433221 2
Q ss_pred HHHHHHHHhhhccCCCceEEEEEeCcchhccc---CchHHHHHhcc-CCCCCCcEEEEEEECCCCcchhhcccccccCCC
Q 010136 223 QYLQNLYSQKLHSSVMKMMLIIADELDYLITR---DRAVLHDLFML-TTFPFSRFILIGIANAIDLADRFLPRLQSMNCK 298 (517)
Q Consensus 223 ~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~---~~~~L~~l~~~-~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~ 298 (517)
.....+|. .-+..+|+|||++++... .|..+.+++.. .+.-...++.+|+....+. =.-++++.+| |
T Consensus 135 ~~~~~llr------~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~a-l~~D~QLa~R-F- 205 (302)
T PF05621_consen 135 QQVLRLLR------RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRA-LRTDPQLASR-F- 205 (302)
T ss_pred HHHHHHHH------HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHH-hccCHHHHhc-c-
Confidence 22334554 445679999999998654 34444444433 2223344555553221111 1237899999 8
Q ss_pred ceEEEeCCCCHHHHHHHHHHHHh-hhc----cCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHh
Q 010136 299 PLVVTFRAYSKDQIIRILQERLM-ELS----YIVFQPQALELCARKVAAASGDMRKALSVCRSAIEILEAEMRE 367 (517)
Q Consensus 299 ~~~i~f~p~~~~e~~~IL~~rl~-~~~----~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~~a~~~~~~ 367 (517)
..+.+++|..++=..-|...++ .++ ...-+++...++. +.+.|.+.....++..|+..|...+.+
T Consensus 206 -~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~---~~s~G~iG~l~~ll~~aA~~AI~sG~E 275 (302)
T PF05621_consen 206 -EPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIH---ERSEGLIGELSRLLNAAAIAAIRSGEE 275 (302)
T ss_pred -CCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH---HHcCCchHHHHHHHHHHHHHHHhcCCc
Confidence 5688899876544433334444 222 1222233333443 346677888888999999999998888
No 130
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.52 E-value=2.3e-13 Score=125.85 Aligned_cols=169 Identities=18% Similarity=0.254 Sum_probs=109.6
Q ss_pred HHHhhccCC-CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCC--------------CceEEEEeCCCCCCHHHHHHH
Q 010136 140 CKKNLEEEK-AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQ--------------QPEVFSINCTSLTNTSEIFSK 204 (517)
Q Consensus 140 L~~~l~~~~-~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~--------------~~~~v~vn~~~~~s~~~i~~~ 204 (517)
|...+..+. +..++|+||+|+|||++++.+++.+.......+.+ ...+.++.....
T Consensus 4 l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~--------- 74 (188)
T TIGR00678 4 LKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQ--------- 74 (188)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccC---------
Confidence 344444444 45799999999999999999999886421111110 001111111100
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCCC
Q 010136 205 ILLKLQPRKKLNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAID 283 (517)
Q Consensus 205 i~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~ 283 (517)
....+.++.++... .........||||||+|.|....++.|...++.+ .....+|.+++.
T Consensus 75 --------------~~~~~~i~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~---~~~~~~il~~~~-- 135 (188)
T TIGR00678 75 --------------SIKVDQVRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEP---PPNTLFILITPS-- 135 (188)
T ss_pred --------------cCCHHHHHHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCC---CCCeEEEEEECC--
Confidence 01123333333211 1112356679999999999876677777777653 345666666774
Q ss_pred cchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHH
Q 010136 284 LADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKA 350 (517)
Q Consensus 284 ~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~a 350 (517)
...+.+.+++| + ..+.|.|++.+++.++|..+ .+++++++++++ .+.||+|+|
T Consensus 136 -~~~l~~~i~sr-~--~~~~~~~~~~~~~~~~l~~~-------gi~~~~~~~i~~---~~~g~~r~~ 188 (188)
T TIGR00678 136 -PEKLLPTIRSR-C--QVLPFPPLSEEALLQWLIRQ-------GISEEAAELLLA---LAGGSPGAA 188 (188)
T ss_pred -hHhChHHHHhh-c--EEeeCCCCCHHHHHHHHHHc-------CCCHHHHHHHHH---HcCCCcccC
Confidence 36788999998 6 69999999999999999876 267888888877 577898864
No 131
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.7e-13 Score=141.46 Aligned_cols=200 Identities=21% Similarity=0.245 Sum_probs=143.1
Q ss_pred CCCCCcHHHHHHHHHHHHHhhc---------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCC
Q 010136 124 STIVCREDEQKKVLEFCKKNLE---------EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTS 194 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~---------~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~ 194 (517)
+.+.|-..++..+...+.-.+. -..+.++++|||||||||.++++|+++.. ..++++|+..
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~----------a~~~~i~~pe 253 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYG----------AFLFLINGPE 253 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhC----------ceeEecccHH
Confidence 4567777777777776544332 23467899999999999999999998865 3688899876
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCc-eEEEEEeCcchhcccCc----------hHHHHHh
Q 010136 195 LTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMK-MMLIIADELDYLITRDR----------AVLHDLF 263 (517)
Q Consensus 195 ~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~vI~iDEiD~L~~~~~----------~~L~~l~ 263 (517)
+.. .+ .....+.|++.|.+. ...+ |.+|||||+|.+++++. ..|+.|+
T Consensus 254 li~----------k~--------~gEte~~LR~~f~~a---~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~ 312 (693)
T KOG0730|consen 254 LIS----------KF--------PGETESNLRKAFAEA---LKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLL 312 (693)
T ss_pred HHH----------hc--------ccchHHHHHHHHHHH---hccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHH
Confidence 422 22 122377788888743 2334 89999999999997421 3466777
Q ss_pred ccCCCCCCcEEEEEEECCCCcchhhcccccc-cCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHH
Q 010136 264 MLTTFPFSRFILIGIANAIDLADRFLPRLQS-MNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAA 342 (517)
Q Consensus 264 ~~~~~~~~~v~lI~ian~~~~~~~l~~~l~s-r~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~ 342 (517)
++.. +..++++|+++|. ++.+++.+++ | | .+.+.+.-++.++..+|++....... ..++..+..+|..+.+
T Consensus 313 dg~~-~~~~vivl~atnr---p~sld~alRRgR-f-d~ev~IgiP~~~~RldIl~~l~k~~~--~~~~~~l~~iA~~thG 384 (693)
T KOG0730|consen 313 DGLK-PDAKVIVLAATNR---PDSLDPALRRGR-F-DREVEIGIPGSDGRLDILRVLTKKMN--LLSDVDLEDIAVSTHG 384 (693)
T ss_pred hhCc-CcCcEEEEEecCC---ccccChhhhcCC-C-cceeeecCCCchhHHHHHHHHHHhcC--CcchhhHHHHHHHccc
Confidence 7754 5689999999994 7778888886 4 4 67999999999999999997777652 2356778888876555
Q ss_pred HhCCHHHHHHHHHHHHHHHHHH
Q 010136 343 ASGDMRKALSVCRSAIEILEAE 364 (517)
Q Consensus 343 ~~Gd~R~al~ll~~A~~~a~~~ 364 (517)
+.|. ..-.+|+.|..-+.++
T Consensus 385 yvGa--DL~~l~~ea~~~~~r~ 404 (693)
T KOG0730|consen 385 YVGA--DLAALCREASLQATRR 404 (693)
T ss_pred hhHH--HHHHHHHHHHHHHhhh
Confidence 4441 2335777776655554
No 132
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.52 E-value=1.2e-12 Score=125.95 Aligned_cols=133 Identities=20% Similarity=0.196 Sum_probs=95.8
Q ss_pred ceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCC---------CcchhhcccccccCCCceEEEeCCCCH
Q 010136 239 KMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAI---------DLADRFLPRLQSMNCKPLVVTFRAYSK 309 (517)
Q Consensus 239 ~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~---------~~~~~l~~~l~sr~~~~~~i~f~p~~~ 309 (517)
-|-||||||++.|.-..-..|...++. .-++++++ +||.- .-|.-+...+..| + -.|.-.||+.
T Consensus 291 VpGVLFIDEvHmLDIE~FsFlnrAlEs---e~aPIii~-AtNRG~~kiRGTd~~sPhGIP~DlLDR-l--lII~t~py~~ 363 (450)
T COG1224 291 VPGVLFIDEVHMLDIECFSFLNRALES---ELAPIIIL-ATNRGMTKIRGTDIESPHGIPLDLLDR-L--LIISTRPYSR 363 (450)
T ss_pred ecceEEEechhhhhHHHHHHHHHHhhc---ccCcEEEE-EcCCceeeecccCCcCCCCCCHhhhhh-e--eEEecCCCCH
Confidence 367999999999954433444444433 33455544 47741 1222233445555 3 4788999999
Q ss_pred HHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhh
Q 010136 310 DQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASA 389 (517)
Q Consensus 310 ~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (517)
+++.+|++.|+... ...++++|+++++.. ...-.+|.|++++.-|..+|...+..
T Consensus 364 ~EireIi~iRa~ee-~i~l~~~Ale~L~~i--g~etSLRYa~qLL~pa~iiA~~rg~~---------------------- 418 (450)
T COG1224 364 EEIREIIRIRAKEE-DIELSDDALEYLTDI--GEETSLRYAVQLLTPASIIAKRRGSK---------------------- 418 (450)
T ss_pred HHHHHHHHHhhhhh-ccccCHHHHHHHHhh--chhhhHHHHHHhccHHHHHHHHhCCC----------------------
Confidence 99999999998632 247899999999874 45568999999999999999988766
Q ss_pred hhccCccccHHHHHHHHHHh
Q 010136 390 FEFFNSQVRVDHMAVALSNT 409 (517)
Q Consensus 390 ~~~~~~~Vt~~~v~~a~~~~ 409 (517)
.|..+||.+|..-.
T Consensus 419 ------~V~~~dVe~a~~lF 432 (450)
T COG1224 419 ------RVEVEDVERAKELF 432 (450)
T ss_pred ------eeehhHHHHHHHHH
Confidence 79999999987543
No 133
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.52 E-value=2e-13 Score=152.46 Aligned_cols=209 Identities=14% Similarity=0.184 Sum_probs=131.0
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFS 203 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~ 203 (517)
+.++||++++.++.+.|.. ...++++|+||||||||++++.++..+........+....+++++...+.....
T Consensus 178 ~~vigr~~ei~~~i~iL~r----~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~--- 250 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQR----RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAK--- 250 (857)
T ss_pred CcCCCCHHHHHHHHHHHhc----CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccc---
Confidence 4699999998888887655 356789999999999999999999887531100011124566766654321110
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC----chHHHHHhccCCCCCCcEEEEEEE
Q 010136 204 KILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD----RAVLHDLFMLTTFPFSRFILIGIA 279 (517)
Q Consensus 204 ~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~----~~~L~~l~~~~~~~~~~v~lI~ia 279 (517)
. .....+.+..+|.+.. ....++||||||+|.|.... .....+++ .+......+.+||+|
T Consensus 251 ------------~-~g~~e~~lk~~~~~~~--~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~l-kp~l~~g~l~~IgaT 314 (857)
T PRK10865 251 ------------Y-RGEFEERLKGVLNDLA--KQEGNVILFIDELHTMVGAGKADGAMDAGNML-KPALARGELHCVGAT 314 (857)
T ss_pred ------------h-hhhhHHHHHHHHHHHH--HcCCCeEEEEecHHHhccCCCCccchhHHHHh-cchhhcCCCeEEEcC
Confidence 0 1112556666665321 23467899999999997542 11123333 234456799999988
Q ss_pred CCCCcch--hhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhh---ccCCCChhHHHHHHHHHHHHhCC---HHHHH
Q 010136 280 NAIDLAD--RFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMEL---SYIVFQPQALELCARKVAAASGD---MRKAL 351 (517)
Q Consensus 280 n~~~~~~--~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~---~~~~~~~~ai~~ia~~~~~~~Gd---~R~al 351 (517)
+..++.. .+++.+.+| | +.|.+..++.++...||+...... ....++++++..++....++-.+ +.+|+
T Consensus 315 t~~e~r~~~~~d~al~rR-f--~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi 391 (857)
T PRK10865 315 TLDEYRQYIEKDAALERR-F--QKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAI 391 (857)
T ss_pred CCHHHHHHhhhcHHHHhh-C--CEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHHH
Confidence 8544322 357899998 7 467888889999999997654322 12345666666554433333222 45666
Q ss_pred HHHHHHH
Q 010136 352 SVCRSAI 358 (517)
Q Consensus 352 ~ll~~A~ 358 (517)
++++.++
T Consensus 392 ~LiD~aa 398 (857)
T PRK10865 392 DLIDEAA 398 (857)
T ss_pred HHHHHHh
Confidence 6655543
No 134
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.50 E-value=2e-12 Score=130.07 Aligned_cols=218 Identities=13% Similarity=0.174 Sum_probs=140.9
Q ss_pred hhcCcCCCCCCCCC-cHHHHHH-HHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeC
Q 010136 115 EALHVSTAPSTIVC-REDEQKK-VLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINC 192 (517)
Q Consensus 115 ~~l~~~~~p~~l~g-Re~e~~~-l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~ 192 (517)
..++++|.+++++. -...... +...+... .+...+.+||||+.|.|||+|++++++...... +...++|+..
T Consensus 78 ~~l~~~ytFdnFv~g~~N~~A~aa~~~va~~-~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~-----~~a~v~y~~s 151 (408)
T COG0593 78 SGLNPKYTFDNFVVGPSNRLAYAAAKAVAEN-PGGAYNPLFIYGGVGLGKTHLLQAIGNEALANG-----PNARVVYLTS 151 (408)
T ss_pred ccCCCCCchhheeeCCchHHHHHHHHHHHhc-cCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhC-----CCceEEeccH
Confidence 34667788776544 4333311 11112221 122467899999999999999999999887532 2346777765
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC--chHHHHHhccCCCCC
Q 010136 193 TSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD--RAVLHDLFMLTTFPF 270 (517)
Q Consensus 193 ~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~--~~~L~~l~~~~~~~~ 270 (517)
. .++..+...+.. ...+.+++.+ ..-+++||+|+.+..+. |+.+..+|+.....+
T Consensus 152 e------~f~~~~v~a~~~--------~~~~~Fk~~y---------~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~ 208 (408)
T COG0593 152 E------DFTNDFVKALRD--------NEMEKFKEKY---------SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENG 208 (408)
T ss_pred H------HHHHHHHHHHHh--------hhHHHHHHhh---------ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcC
Confidence 3 444444444421 1133344333 33589999999998764 677777777644333
Q ss_pred CcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHH
Q 010136 271 SRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKA 350 (517)
Q Consensus 271 ~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~a 350 (517)
..+ |+.......-...++++|+||+-....+.+.|++.+.+..||+.+.+. ....+++++++++|. ....|+|.+
T Consensus 209 kqI-vltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~-~~~~i~~ev~~~la~---~~~~nvReL 283 (408)
T COG0593 209 KQI-VLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAED-RGIEIPDEVLEFLAK---RLDRNVREL 283 (408)
T ss_pred CEE-EEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHh-cCCCCCHHHHHHHHH---HhhccHHHH
Confidence 333 333233322333457999999445578999999999999999987653 234889999999998 467788887
Q ss_pred HHHHHHHHHHHHHHHH
Q 010136 351 LSVCRSAIEILEAEMR 366 (517)
Q Consensus 351 l~ll~~A~~~a~~~~~ 366 (517)
...+.+....+...++
T Consensus 284 egaL~~l~~~a~~~~~ 299 (408)
T COG0593 284 EGALNRLDAFALFTKR 299 (408)
T ss_pred HHHHHHHHHHHHhcCc
Confidence 7777776665555443
No 135
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=3.9e-13 Score=144.03 Aligned_cols=214 Identities=15% Similarity=0.170 Sum_probs=147.5
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHH
Q 010136 123 PSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIF 202 (517)
Q Consensus 123 p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~ 202 (517)
-+-++||++|+.++.+.|.+ ...+|.++.|+||+|||+++..++..+....--..+....++.++...+..
T Consensus 169 lDPvIGRd~EI~r~iqIL~R----R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvA----- 239 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSR----RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVA----- 239 (786)
T ss_pred CCCCcChHHHHHHHHHHHhc----cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhc-----
Confidence 34589999999999999776 345788899999999999999999887641100011122344444333211
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCch---H--HHHHhccCCCCCCcEEEEE
Q 010136 203 SKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRA---V--LHDLFMLTTFPFSRFILIG 277 (517)
Q Consensus 203 ~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~---~--L~~l~~~~~~~~~~v~lI~ 277 (517)
+. .. .+..++.|..++.+.. ...++||||||+|.+...... . .-+++. +......+-+||
T Consensus 240 --------Ga--ky-RGeFEeRlk~vl~ev~---~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLK-PaLARGeL~~IG 304 (786)
T COG0542 240 --------GA--KY-RGEFEERLKAVLKEVE---KSKNVILFIDEIHTIVGAGATEGGAMDAANLLK-PALARGELRCIG 304 (786)
T ss_pred --------cc--cc-cCcHHHHHHHHHHHHh---cCCCeEEEEechhhhcCCCcccccccchhhhhH-HHHhcCCeEEEE
Confidence 00 11 2333677777776422 233899999999999875421 1 223332 344567899999
Q ss_pred EECCCCcchhh--cccccccCCCceEEEeCCCCHHHHHHHHHHHHh---hhccCCCChhHHHHHHHHHHHHhCC---HHH
Q 010136 278 IANAIDLADRF--LPRLQSMNCKPLVVTFRAYSKDQIIRILQERLM---ELSYIVFQPQALELCARKVAAASGD---MRK 349 (517)
Q Consensus 278 ian~~~~~~~l--~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~---~~~~~~~~~~ai~~ia~~~~~~~Gd---~R~ 349 (517)
+|+..++...+ +++|.+| | +.|.+..++.++...||+..-. ......++++|+..++....++-.| +.+
T Consensus 305 ATT~~EYRk~iEKD~AL~RR-F--Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDK 381 (786)
T COG0542 305 ATTLDEYRKYIEKDAALERR-F--QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDK 381 (786)
T ss_pred eccHHHHHHHhhhchHHHhc-C--ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCch
Confidence 88754444444 6788888 8 7899999999999999986543 3344688999999999887776665 789
Q ss_pred HHHHHHHHHHHHHH
Q 010136 350 ALSVCRSAIEILEA 363 (517)
Q Consensus 350 al~ll~~A~~~a~~ 363 (517)
||++++.|+.....
T Consensus 382 AIDLiDeA~a~~~l 395 (786)
T COG0542 382 AIDLLDEAGARVRL 395 (786)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999865544
No 136
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.46 E-value=1.1e-12 Score=143.34 Aligned_cols=213 Identities=16% Similarity=0.166 Sum_probs=141.3
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhcc-----CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCC
Q 010136 123 PSTIVCREDEQKKVLEFCKKNLEE-----EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTN 197 (517)
Q Consensus 123 p~~l~gRe~e~~~l~~~L~~~l~~-----~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s 197 (517)
-..++|+++.++.|...+.....+ ...++++|+||||||||.+++.+++.+. ..++.++|..+..
T Consensus 457 ~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~----------~~~i~id~se~~~ 526 (758)
T PRK11034 457 KMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG----------IELLRFDMSEYME 526 (758)
T ss_pred cceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC----------CCcEEeechhhcc
Confidence 346899999999999998876432 1235799999999999999999988873 2588999887654
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCC--------C
Q 010136 198 TSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF--------P 269 (517)
Q Consensus 198 ~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~--------~ 269 (517)
...+ ..+.+....+.+......|.+.+. .....||+|||||.+....++.|.++++-... .
T Consensus 527 ~~~~-----~~LiG~~~gyvg~~~~g~L~~~v~------~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd 595 (758)
T PRK11034 527 RHTV-----SRLIGAPPGYVGFDQGGLLTDAVI------KHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKAD 595 (758)
T ss_pred cccH-----HHHcCCCCCcccccccchHHHHHH------hCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceec
Confidence 3321 233232222222221233444443 33457999999999988888888888875321 1
Q ss_pred CCcEEEEEEECCC---------Cc-------------chhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhc---
Q 010136 270 FSRFILIGIANAI---------DL-------------ADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELS--- 324 (517)
Q Consensus 270 ~~~v~lI~ian~~---------~~-------------~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~--- 324 (517)
-.++++|+++|.- .+ ...+.|.+..| + ...|.|.|++.+++.+|+...+..+.
T Consensus 596 ~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~R-i-d~ii~f~~L~~~~l~~I~~~~l~~~~~~l 673 (758)
T PRK11034 596 FRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNR-L-DNIIWFDHLSTDVIHQVVDKFIVELQAQL 673 (758)
T ss_pred CCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHcc-C-CEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2578899988821 11 12245777777 4 46999999999999999987664221
Q ss_pred -----cCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 010136 325 -----YIVFQPQALELCARKVAAASGDMRKALSVCRSAI 358 (517)
Q Consensus 325 -----~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~ 358 (517)
.-.+++++++++++......-.+|-.-.+++.-+
T Consensus 674 ~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l 712 (758)
T PRK11034 674 DQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNL 712 (758)
T ss_pred HHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHH
Confidence 2467899999998753322224454444444433
No 137
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=99.45 E-value=3.1e-12 Score=124.29 Aligned_cols=223 Identities=20% Similarity=0.205 Sum_probs=145.0
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHH
Q 010136 122 APSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEI 201 (517)
Q Consensus 122 ~p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i 201 (517)
+-..++|||.++..+...+.+.-. .-+.+++|+|..|||||.+++.+++.++ .+.+|+||.+.-+...+
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~-~~PS~~~iyG~sgTGKT~~~r~~l~~~n----------~~~vw~n~~ecft~~~l 72 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSC-TIPSIVHIYGHSGTGKTYLVRQLLRKLN----------LENVWLNCVECFTYAIL 72 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCc-ccceeEEEeccCCCchhHHHHHHHhhcC----------CcceeeehHHhccHHHH
Confidence 445789999999999988776332 2355679999999999999999998873 46899999999999999
Q ss_pred HHHHHHHhC-CCCCCCCCCCHHH---HHHHHHHhh-hccCCCceEEEEEeCcchhcccCchHHHHHhccCCC-CCCcEEE
Q 010136 202 FSKILLKLQ-PRKKLNGSTSPLQ---YLQNLYSQK-LHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF-PFSRFIL 275 (517)
Q Consensus 202 ~~~i~~~l~-~~~~~~~~~~~~~---~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~-~~~~v~l 275 (517)
+..|+.++. ....+.....+.+ .+-..|.+. ...+.....+|++|.+|.+.......|..++++... ....+.+
T Consensus 73 le~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~i 152 (438)
T KOG2543|consen 73 LEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVI 152 (438)
T ss_pred HHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEE
Confidence 999999985 2221111111122 233344431 122234689999999999987666666666666322 2224555
Q ss_pred EEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHH
Q 010136 276 IGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCR 355 (517)
Q Consensus 276 I~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~ 355 (517)
|.+... ++.....+. +. +.+.+++|+.|+.+++..|+..--.+.....|-..-++.+..-....++|++....++.
T Consensus 153 ils~~~--~e~~y~~n~-g~-~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~crd~~eL~~~~~ 228 (438)
T KOG2543|consen 153 ILSAPS--CEKQYLINT-GT-LEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMACRDVNELRSLIS 228 (438)
T ss_pred EEeccc--cHHHhhccc-CC-CCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 554442 222222222 22 45679999999999999999854332111011123355555555567889887777777
Q ss_pred HHHH
Q 010136 356 SAIE 359 (517)
Q Consensus 356 ~A~~ 359 (517)
.+|-
T Consensus 229 ~~wp 232 (438)
T KOG2543|consen 229 LAWP 232 (438)
T ss_pred HHHH
Confidence 7663
No 138
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=9.3e-13 Score=143.70 Aligned_cols=246 Identities=18% Similarity=0.143 Sum_probs=162.4
Q ss_pred CCCCCCCcHHHHHHHHHHHHH-hhc--------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeC
Q 010136 122 APSTIVCREDEQKKVLEFCKK-NLE--------EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINC 192 (517)
Q Consensus 122 ~p~~l~gRe~e~~~l~~~L~~-~l~--------~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~ 192 (517)
-.+.+.|.+..+.++.+.+.. .+. -.++..++++||||||||..+++++..+... ..++.|+--.+
T Consensus 263 ~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~-----~~kisffmrkg 337 (1080)
T KOG0732|consen 263 GFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRG-----NRKISFFMRKG 337 (1080)
T ss_pred CccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhccc-----ccccchhhhcC
Confidence 346788899888888887432 211 2347789999999999999999998877542 22223333333
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC---ch--------HHHH
Q 010136 193 TSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD---RA--------VLHD 261 (517)
Q Consensus 193 ~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~---~~--------~L~~ 261 (517)
....+. |.|.. .++++-+|.+ +....|.|||+||||-|.... |+ .|..
T Consensus 338 aD~lsk-----------------wvgEa-ERqlrllFee---A~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLa 396 (1080)
T KOG0732|consen 338 ADCLSK-----------------WVGEA-ERQLRLLFEE---AQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLA 396 (1080)
T ss_pred chhhcc-----------------ccCcH-HHHHHHHHHH---HhccCceEEeccccccccccccchHHHhhhhHHHHHHH
Confidence 332222 22443 7889999984 357789999999999887643 22 2334
Q ss_pred HhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHH
Q 010136 262 LFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVA 341 (517)
Q Consensus 262 l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~ 341 (517)
|++-. ...++++|||++| .++.++|.+++.....++++|+-++.+...+|+.-+-.... ..+....+..+|+...
T Consensus 397 LmdGl-dsRgqVvvigATn---Rpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~-~~i~~~l~~~la~~t~ 471 (1080)
T KOG0732|consen 397 LMDGL-DSRGQVVVIGATN---RPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWE-PPISRELLLWLAEETS 471 (1080)
T ss_pred hccCC-CCCCceEEEcccC---CccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCC-CCCCHHHHHHHHHhcc
Confidence 44432 2457999999999 47778899988755568999999999999999987665443 5677778888888665
Q ss_pred HHhC-CHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccCh
Q 010136 342 AASG-DMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSP 413 (517)
Q Consensus 342 ~~~G-d~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~ 413 (517)
++.| |++ .+|-.|+.++.+..-... -.+.++... ......|...|+-.|+.+...+.
T Consensus 472 gy~gaDlk---aLCTeAal~~~~r~~Pq~----y~s~~kl~~--------d~~~ikV~~~~f~~A~~~i~ps~ 529 (1080)
T KOG0732|consen 472 GYGGADLK---ALCTEAALIALRRSFPQI----YSSSDKLLI--------DVALIKVEVRDFVEAMSRITPSS 529 (1080)
T ss_pred ccchHHHH---HHHHHHhhhhhccccCee----ecccccccc--------cchhhhhhhHhhhhhhhccCCCC
Confidence 5555 443 588888877765432210 000111111 11112577888888887776553
No 139
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.43 E-value=1.4e-11 Score=114.91 Aligned_cols=193 Identities=16% Similarity=0.215 Sum_probs=135.3
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFS 203 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~ 203 (517)
+.|+|-|.+.+.|......++.+.+..++||+|++|||||+++++++.++... | +.+|+|.-..+.+...++.
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~----G---LRlIev~k~~L~~l~~l~~ 99 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ----G---LRLIEVSKEDLGDLPELLD 99 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc----C---ceEEEECHHHhccHHHHHH
Confidence 57999999999999999999999999999999999999999999999887653 3 5789998777655444322
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC--chHHHHHhccC-CCCCCcEEEEEEEC
Q 010136 204 KILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD--RAVLHDLFMLT-TFPFSRFILIGIAN 280 (517)
Q Consensus 204 ~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~--~~~L~~l~~~~-~~~~~~v~lI~ian 280 (517)
.+. ......|||+|++. +.... -..|..+++-. .....+|++.+++|
T Consensus 100 ------------------------~l~-----~~~~kFIlf~DDLs-Fe~~d~~yk~LKs~LeGgle~~P~NvliyATSN 149 (249)
T PF05673_consen 100 ------------------------LLR-----DRPYKFILFCDDLS-FEEGDTEYKALKSVLEGGLEARPDNVLIYATSN 149 (249)
T ss_pred ------------------------HHh-----cCCCCEEEEecCCC-CCCCcHHHHHHHHHhcCccccCCCcEEEEEecc
Confidence 222 23456899999854 22222 24677777653 34567999999999
Q ss_pred CCCcchh-hc-----------------c--cccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHH
Q 010136 281 AIDLADR-FL-----------------P--RLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKV 340 (517)
Q Consensus 281 ~~~~~~~-l~-----------------~--~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~ 340 (517)
.-.+... .. . .|..| |+. .|.|.+++.++..+|+...+.... ..++++.+..-|...
T Consensus 150 RRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDR-FGL-~l~F~~~~q~~YL~IV~~~~~~~g-~~~~~e~l~~~Al~w 226 (249)
T PF05673_consen 150 RRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDR-FGL-WLSFYPPDQEEYLAIVRHYAERYG-LELDEEELRQEALQW 226 (249)
T ss_pred hhhccchhhhhccCCCccccCcchHHHHHHhHHHh-CCc-EEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH
Confidence 7542211 11 1 23455 776 999999999999999999886432 255555555544444
Q ss_pred HHHhC--CHHHHHHHHHH
Q 010136 341 AAASG--DMRKALSVCRS 356 (517)
Q Consensus 341 ~~~~G--d~R~al~ll~~ 356 (517)
+...| +.|.|-+.++.
T Consensus 227 a~~rg~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 227 ALRRGGRSGRTARQFIDD 244 (249)
T ss_pred HHHcCCCCHHHHHHHHHH
Confidence 44444 56766655543
No 140
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.43 E-value=9e-12 Score=121.12 Aligned_cols=221 Identities=16% Similarity=0.107 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHH-----
Q 010136 132 EQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKIL----- 206 (517)
Q Consensus 132 e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~----- 206 (517)
.++.+.+.+..++. .+.+++|+||||||||++|++++..++ ..++.++|....+..+++....
T Consensus 6 ~~~~l~~~~l~~l~--~g~~vLL~G~~GtGKT~lA~~la~~lg----------~~~~~i~~~~~~~~~dllg~~~~~~~~ 73 (262)
T TIGR02640 6 AVKRVTSRALRYLK--SGYPVHLRGPAGTGKTTLAMHVARKRD----------RPVMLINGDAELTTSDLVGSYAGYTRK 73 (262)
T ss_pred HHHHHHHHHHHHHh--cCCeEEEEcCCCCCHHHHHHHHHHHhC----------CCEEEEeCCccCCHHHHhhhhcccchh
Confidence 34555555555554 356899999999999999999987553 3689999988666655432211
Q ss_pred ---HHh----CCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCC--C---------
Q 010136 207 ---LKL----QPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTT--F--------- 268 (517)
Q Consensus 207 ---~~l----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~--~--------- 268 (517)
..+ ...............+...+ ....+|+|||++.+....+..|..+++... .
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~--------~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~ 145 (262)
T TIGR02640 74 KVHDQFIHNVVKLEDIVRQNWVDNRLTLAV--------REGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRY 145 (262)
T ss_pred hHHHHHHHHhhhhhcccceeecCchHHHHH--------HcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCce
Confidence 000 00000000000000011111 123589999999998878888888886421 0
Q ss_pred --CCCcEEEEEEECCCCc--chhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHh
Q 010136 269 --PFSRFILIGIANAIDL--ADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAAS 344 (517)
Q Consensus 269 --~~~~v~lI~ian~~~~--~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~ 344 (517)
....+.+|+++|...+ ...+.+.+.+| | ..+.+..++.++..+|+..+. .++++.++.+.+.+....
T Consensus 146 i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R-~--~~i~i~~P~~~~e~~Il~~~~------~~~~~~~~~iv~~~~~~R 216 (262)
T TIGR02640 146 VDVHPEFRVIFTSNPVEYAGVHETQDALLDR-L--ITIFMDYPDIDTETAILRAKT------DVAEDSAATIVRLVREFR 216 (262)
T ss_pred EecCCCCEEEEeeCCccccceecccHHHHhh-c--EEEECCCCCHHHHHHHHHHhh------CCCHHHHHHHHHHHHHHH
Confidence 1236778999997532 22346678887 6 578888889999999999764 245666666666554322
Q ss_pred --C-----CHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccC
Q 010136 345 --G-----DMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKS 412 (517)
Q Consensus 345 --G-----d~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~ 412 (517)
+ .+|.++.+++.+...+. .. .++.++|.++...+..+
T Consensus 217 ~~~~~~~~~~r~~i~~~~~~~~~~~---~~----------------------------~~~~~~~~~~~~~~~~~ 260 (262)
T TIGR02640 217 ASGDEITSGLRASLMIAEVATQQDI---PV----------------------------DVDDEDFVDLCIDILAS 260 (262)
T ss_pred hhCCccCCcHHHHHHHHHHHHHcCC---CC----------------------------CCCcHHHHHHHHHHhcc
Confidence 1 26777777776654321 11 68888888887665543
No 141
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.43 E-value=5.2e-12 Score=131.51 Aligned_cols=211 Identities=17% Similarity=0.199 Sum_probs=140.4
Q ss_pred hcCcCCCCC---CCCCcHHHHHHHHHHHHHh------------------------------hccCCCCeEEEEcCCCCcH
Q 010136 116 ALHVSTAPS---TIVCREDEQKKVLEFCKKN------------------------------LEEEKAGSLYVCGCPGTGK 162 (517)
Q Consensus 116 ~l~~~~~p~---~l~gRe~e~~~l~~~L~~~------------------------------l~~~~~~~lli~G~pGtGK 162 (517)
+|...|.|. +|++-|..-..+..||+.+ ........++|+||||.||
T Consensus 260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK 339 (877)
T KOG1969|consen 260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK 339 (877)
T ss_pred eeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence 555556554 5666666666666666543 1112234799999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEE
Q 010136 163 SLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMML 242 (517)
Q Consensus 163 T~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v 242 (517)
||+|+.++++.+ +.+++||++...+...+-..|...+... .+..+..+|..
T Consensus 340 TTLAHViAkqaG----------YsVvEINASDeRt~~~v~~kI~~avq~~-------------------s~l~adsrP~C 390 (877)
T KOG1969|consen 340 TTLAHVIAKQAG----------YSVVEINASDERTAPMVKEKIENAVQNH-------------------SVLDADSRPVC 390 (877)
T ss_pred hHHHHHHHHhcC----------ceEEEecccccccHHHHHHHHHHHHhhc-------------------cccccCCCcce
Confidence 999999998865 6899999999999888755555444211 12334678899
Q ss_pred EEEeCcchhcccCchHHHHHhccC--C---CCC-------------CcEEEEEEECCCCcchhhcccccccCCCceEEEe
Q 010136 243 IIADELDYLITRDRAVLHDLFMLT--T---FPF-------------SRFILIGIANAIDLADRFLPRLQSMNCKPLVVTF 304 (517)
Q Consensus 243 I~iDEiD~L~~~~~~~L~~l~~~~--~---~~~-------------~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f 304 (517)
|||||||--....-++|..+++.. + ... -.=-||||.|++. -|.|+--+-....|.|
T Consensus 391 LViDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY-----aPaLR~Lr~~A~ii~f 465 (877)
T KOG1969|consen 391 LVIDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY-----APALRPLRPFAEIIAF 465 (877)
T ss_pred EEEecccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc-----chhhhhcccceEEEEe
Confidence 999999976543346677776631 0 011 0113788899743 3444332123479999
Q ss_pred CCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 010136 305 RAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRSAIEILEAE 364 (517)
Q Consensus 305 ~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~~a~~~ 364 (517)
.|++..-+.+-|+.... .+.-..+..++..+++ -+.+|+|..|+.|+-....+.+.
T Consensus 466 ~~p~~s~Lv~RL~~IC~-rE~mr~d~~aL~~L~e---l~~~DIRsCINtLQfLa~~~~r~ 521 (877)
T KOG1969|consen 466 VPPSQSRLVERLNEICH-RENMRADSKALNALCE---LTQNDIRSCINTLQFLASNVDRR 521 (877)
T ss_pred cCCChhHHHHHHHHHHh-hhcCCCCHHHHHHHHH---HhcchHHHHHHHHHHHHHhcccc
Confidence 99999888866664432 1223667888888877 47899999999998766544443
No 142
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.43 E-value=8.7e-12 Score=126.05 Aligned_cols=208 Identities=15% Similarity=0.202 Sum_probs=125.0
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCC-eEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCC-c-eEEEEeCCCCCCHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAG-SLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQ-P-EVFSINCTSLTNTSE 200 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~-~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~-~-~~v~vn~~~~~s~~~ 200 (517)
++++|+++..+.|...+.. ++.+ .++|+||+|+||++++..+++.+.+.....+... . ......|....
T Consensus 19 ~~iiGq~~~~~~L~~~~~~----~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~---- 90 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRS----GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHP---- 90 (365)
T ss_pred hhccChHHHHHHHHHHHHc----CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCCh----
Confidence 4689999877666655443 4444 5889999999999999999999875321110000 0 00000011111
Q ss_pred HHHHHHHHhCCC---------CCCC--CCCCHHHHHHHHHHh-hhccCCCceEEEEEeCcchhcccCchHHHHHhccCCC
Q 010136 201 IFSKILLKLQPR---------KKLN--GSTSPLQYLQNLYSQ-KLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF 268 (517)
Q Consensus 201 i~~~i~~~l~~~---------~~~~--~~~~~~~~l~~~~~~-~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~ 268 (517)
.+..+...-... .+.. ...-..+.++.+... ......+.+.|+||||+|.+....++.|..+++.+
T Consensus 91 ~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEep-- 168 (365)
T PRK07471 91 VARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP-- 168 (365)
T ss_pred HHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcC--
Confidence 111111110000 0000 011123445544432 12233467789999999999877777777777653
Q ss_pred CCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHH
Q 010136 269 PFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMR 348 (517)
Q Consensus 269 ~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R 348 (517)
....++|.+++. ++.+.+.++|| | +.+.|.|++.+++.++|..... ..+++.+..+++ .+.|+++
T Consensus 169 -p~~~~~IL~t~~---~~~llpti~SR-c--~~i~l~~l~~~~i~~~L~~~~~-----~~~~~~~~~l~~---~s~Gsp~ 233 (365)
T PRK07471 169 -PARSLFLLVSHA---PARLLPTIRSR-C--RKLRLRPLAPEDVIDALAAAGP-----DLPDDPRAALAA---LAEGSVG 233 (365)
T ss_pred -CCCeEEEEEECC---chhchHHhhcc-c--eEEECCCCCHHHHHHHHHHhcc-----cCCHHHHHHHHH---HcCCCHH
Confidence 345566666774 45678889998 7 7999999999999999987542 223444444443 5789999
Q ss_pred HHHHHHHH
Q 010136 349 KALSVCRS 356 (517)
Q Consensus 349 ~al~ll~~ 356 (517)
.|+.++..
T Consensus 234 ~Al~ll~~ 241 (365)
T PRK07471 234 RALRLAGG 241 (365)
T ss_pred HHHHHhcc
Confidence 99998853
No 143
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.42 E-value=7.9e-13 Score=125.66 Aligned_cols=200 Identities=19% Similarity=0.202 Sum_probs=130.2
Q ss_pred CcCCCCC---CCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCC
Q 010136 118 HVSTAPS---TIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTS 194 (517)
Q Consensus 118 ~~~~~p~---~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~ 194 (517)
.+.|-|. .+++.++.+..+.++ ...++-+++|+|||||||||+++.+.++.+.... +.. --+...|++.
T Consensus 32 vekyrP~~l~dv~~~~ei~st~~~~----~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~---~~~-~m~lelnaSd 103 (360)
T KOG0990|consen 32 VEKYRPPFLGIVIKQEPIWSTENRY----SGMPGLPHLLFYGPPGTGKTSTILANARDFYSPH---PTT-SMLLELNASD 103 (360)
T ss_pred ccCCCCchhhhHhcCCchhhHHHHh----ccCCCCCcccccCCCCCCCCCchhhhhhhhcCCC---Cch-hHHHHhhccC
Confidence 3445553 466666655555444 4445667999999999999999999998876410 000 0122233332
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhh----hccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCC
Q 010136 195 LTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQK----LHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPF 270 (517)
Q Consensus 195 ~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~ 270 (517)
.... ...+.-...|... .-+......++|+||+|.+....|++|....+-.+
T Consensus 104 ~rgi---------------------d~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t--- 159 (360)
T KOG0990|consen 104 DRGI---------------------DPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYT--- 159 (360)
T ss_pred ccCC---------------------cchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHhc---
Confidence 2211 1111111111100 00113467899999999999999999998554432
Q ss_pred CcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHH
Q 010136 271 SRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKA 350 (517)
Q Consensus 271 ~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~a 350 (517)
.++.++.++| .+..+.|.++|| | .++.|.|++..+...++.+..+. +....+++....+++ -+.||+|.|
T Consensus 160 ~n~rF~ii~n---~~~ki~pa~qsR-c--trfrf~pl~~~~~~~r~shi~e~-e~~~~~~~~~~a~~r---~s~gDmr~a 229 (360)
T KOG0990|consen 160 ANTRFATISN---PPQKIHPAQQSR-C--TRFRFAPLTMAQQTERQSHIRES-EQKETNPEGYSALGR---LSVGDMRVA 229 (360)
T ss_pred cceEEEEecc---ChhhcCchhhcc-c--ccCCCCCCChhhhhhHHHHHHhc-chhhcCHHHHHHHHH---HhHHHHHHH
Confidence 3444445578 577889999999 8 78999999999999999877763 223566666666555 478999999
Q ss_pred HHHHHHHHH
Q 010136 351 LSVCRSAIE 359 (517)
Q Consensus 351 l~ll~~A~~ 359 (517)
++.++....
T Consensus 230 ~n~Lqs~~~ 238 (360)
T KOG0990|consen 230 LNYLQSILK 238 (360)
T ss_pred HHHHHHHHH
Confidence 999988764
No 144
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.41 E-value=2.1e-12 Score=144.00 Aligned_cols=218 Identities=13% Similarity=0.181 Sum_probs=147.4
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhcc----CCC-CeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCC
Q 010136 122 APSTIVCREDEQKKVLEFCKKNLEE----EKA-GSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLT 196 (517)
Q Consensus 122 ~p~~l~gRe~e~~~l~~~L~~~l~~----~~~-~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~ 196 (517)
+-..++|++..++.+...+..+..+ .++ +.++|+||+|||||.+++++++.+... . -.++.++++.+.
T Consensus 564 L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~-----~--~~~~~~dmse~~ 636 (852)
T TIGR03345 564 LAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG-----E--QNLITINMSEFQ 636 (852)
T ss_pred hcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC-----C--cceEEEeHHHhh
Confidence 4457899999999999999876332 122 368999999999999999999988531 1 257888887765
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCC--------
Q 010136 197 NTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF-------- 268 (517)
Q Consensus 197 s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~-------- 268 (517)
....+ ..|.+...++.|......|...+. .....||+||||+.+....++.|.++++....
T Consensus 637 ~~~~~-----~~l~g~~~gyvg~~~~g~L~~~v~------~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~v 705 (852)
T TIGR03345 637 EAHTV-----SRLKGSPPGYVGYGEGGVLTEAVR------RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREI 705 (852)
T ss_pred hhhhh-----ccccCCCCCcccccccchHHHHHH------hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEE
Confidence 44332 223333333333322234555554 35668999999999887777888888875321
Q ss_pred CCCcEEEEEEECCCC--------------------------cchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhh
Q 010136 269 PFSRFILIGIANAID--------------------------LADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLME 322 (517)
Q Consensus 269 ~~~~v~lI~ian~~~--------------------------~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~ 322 (517)
.-.+.++|.+||.-. +...+.|.+.+| + ..|.|.|++.+++..|+...+..
T Consensus 706 d~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnR-i--~iI~F~pLs~e~l~~Iv~~~L~~ 782 (852)
T TIGR03345 706 DFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGR-M--TVIPYLPLDDDVLAAIVRLKLDR 782 (852)
T ss_pred eccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcc-e--eEEEeCCCCHHHHHHHHHHHHHH
Confidence 125788888888410 011244677777 6 58999999999999999887753
Q ss_pred hc---------cCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 010136 323 LS---------YIVFQPQALELCARKVAAASGDMRKALSVCRSAIEI 360 (517)
Q Consensus 323 ~~---------~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~~ 360 (517)
+. .-.+++++++++++......-++|....+++.-+.-
T Consensus 783 l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~ 829 (852)
T TIGR03345 783 IARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLP 829 (852)
T ss_pred HHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence 21 125899999999885322223788887777665543
No 145
>cd08768 Cdc6_C Winged-helix domain of essential DNA replication protein Cell division control protein (Cdc6), which mediates DNA binding. This model characterizes the winged-helix, C-terminal domain of the Cell division control protein (Cdc6_C). Cdc6 (also known as Cell division cycle 6 or Cdc18) functions as a regulator at the early stages of DNA replication, by helping to recruit and load the Minichromosome Maintenance Complex (MCM) onto DNA and may have additional roles in the control of mitotic entry. Precise duplication of chromosomal DNA is required for genomic stability during replication. Cdc6 has an essential role in DNA replication and irregular expression of Cdc6 may lead to genomic instability. Cdc6 over-expression is observed in many cancerous lesions. DNA replication begins when an origin recognition complex (ORC) binds to a replication origin site on the chromatin. Studies indicate that Cdc6 interacts with ORC through the Orc1 subunit, and that this association increases
Probab=99.41 E-value=8.7e-13 Score=105.64 Aligned_cols=81 Identities=23% Similarity=0.521 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHHHHhc-CCCCccHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhcCceeec-----cCCceeEEEe
Q 010136 422 PQHQQILLCSAVKFFRG-GKKDMTVGELNKSYMNICKTSLIPPVGTLEFFSMCRVLHDQGVLKVG-----RDDKLKRVTL 495 (517)
Q Consensus 422 ~~~~k~iL~al~~l~~~-~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~L~~~glI~~~-----~~~~~~~~~l 495 (517)
|.|+|++|+|++.+.+. +..++++++||+.|+.+|+..+.+|+++++|.++|+.|+.+|||... ++|+++.|+|
T Consensus 1 p~~~Kl~L~Al~~~~~~~~~~~~~~~~vy~~Y~~~c~~~~~~~l~~~~~~~~l~~L~~~gli~~~~~~~g~~g~~~~~~l 80 (87)
T cd08768 1 PLHQKLVLLALLLLFKRGGEEEATTGEVYEVYEELCEEIGVDPLTQRRISDLLSELEMLGLLETEVSSKGRRGRTRKISL 80 (87)
T ss_pred CchHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCeEEEEecCCCCceEEEEEe
Confidence 68999999999998865 46789999999999999999999999999999999999999999876 2456999999
Q ss_pred ecCHHHH
Q 010136 496 KADESDI 502 (517)
Q Consensus 496 ~~~~~~i 502 (517)
++++++|
T Consensus 81 ~~~~~~v 87 (87)
T cd08768 81 NVDPDDV 87 (87)
T ss_pred cCCcccC
Confidence 9998864
No 146
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.41 E-value=1.4e-11 Score=122.32 Aligned_cols=215 Identities=14% Similarity=0.128 Sum_probs=129.5
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHh--------cCCCCceEEEEeCCC
Q 010136 123 PSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKE--------AGLQQPEVFSINCTS 194 (517)
Q Consensus 123 p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~--------~~~~~~~~v~vn~~~ 194 (517)
.++++|++...+.+...+.. +.-+..++|+||+|+||++++.++++.+.+.... .....+.++++....
T Consensus 3 f~~iiGq~~~~~~L~~~i~~---~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~ 79 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQ---NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTY 79 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHh---CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccc
Confidence 34689999877777666544 2236789999999999999999999998653210 011112334433211
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcE
Q 010136 195 LTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRF 273 (517)
Q Consensus 195 ~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v 273 (517)
......+-..-+...+...... +.-..+.++++.... .....+...|+|||++|.|....++.|..+++.+. +.
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~-~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp----~~ 154 (314)
T PRK07399 80 QHQGKLITASEAEEAGLKRKAP-PQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG----NG 154 (314)
T ss_pred cccccccchhhhhhcccccccc-ccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC----CC
Confidence 0000000000001111000100 111133344433211 12224567899999999998877888888887753 33
Q ss_pred EEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHH
Q 010136 274 ILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSV 353 (517)
Q Consensus 274 ~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~l 353 (517)
++|.+++. ++++.|.++|| | +.+.|.+++.+++.++|...... ...+. ....+ +..+.|+++.|+++
T Consensus 155 ~fILi~~~---~~~Ll~TI~SR-c--q~i~f~~l~~~~~~~~L~~~~~~---~~~~~-~~~~l---~~~a~Gs~~~al~~ 221 (314)
T PRK07399 155 TLILIAPS---PESLLPTIVSR-C--QIIPFYRLSDEQLEQVLKRLGDE---EILNI-NFPEL---LALAQGSPGAAIAN 221 (314)
T ss_pred eEEEEECC---hHhCcHHHHhh-c--eEEecCCCCHHHHHHHHHHhhcc---ccchh-HHHHH---HHHcCCCHHHHHHH
Confidence 45666774 67899999999 7 79999999999999999976431 11111 12333 33589999999998
Q ss_pred HHHHH
Q 010136 354 CRSAI 358 (517)
Q Consensus 354 l~~A~ 358 (517)
+....
T Consensus 222 l~~~~ 226 (314)
T PRK07399 222 IEQLQ 226 (314)
T ss_pred HHHHH
Confidence 86543
No 147
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.40 E-value=6e-12 Score=139.31 Aligned_cols=213 Identities=16% Similarity=0.181 Sum_probs=141.4
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhcc----C-CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCC
Q 010136 123 PSTIVCREDEQKKVLEFCKKNLEE----E-KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTN 197 (517)
Q Consensus 123 p~~l~gRe~e~~~l~~~L~~~l~~----~-~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s 197 (517)
...++|++..++.+...+.....+ . ..++++|+||+|||||.+++.+++.+. ..++.+++..+..
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~----------~~~~~~d~se~~~ 522 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG----------VHLERFDMSEYME 522 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc----------CCeEEEeCchhhh
Confidence 346799999999999998764322 1 234689999999999999999998874 2588899877655
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCC--------C
Q 010136 198 TSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF--------P 269 (517)
Q Consensus 198 ~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~--------~ 269 (517)
...+ ..+-+....+.|......+.+.+. .....||+|||||.+....++.|.++++-... .
T Consensus 523 ~~~~-----~~lig~~~gyvg~~~~~~l~~~~~------~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd 591 (731)
T TIGR02639 523 KHTV-----SRLIGAPPGYVGFEQGGLLTEAVR------KHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKAD 591 (731)
T ss_pred cccH-----HHHhcCCCCCcccchhhHHHHHHH------hCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccC
Confidence 4332 122222222233333344555554 34568999999999988888888888875311 1
Q ss_pred CCcEEEEEEECCCC----------------------cchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhh----
Q 010136 270 FSRFILIGIANAID----------------------LADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMEL---- 323 (517)
Q Consensus 270 ~~~v~lI~ian~~~----------------------~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~---- 323 (517)
-.++++|+++|.-. +...+.|.+..| + ..+|.|.|++.+++.+|+...+..+
T Consensus 592 ~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~R-i-d~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l 669 (731)
T TIGR02639 592 FRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNR-L-DAIIHFNPLSEEVLEKIVQKFVDELSKQL 669 (731)
T ss_pred CCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhc-C-CeEEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 24677888777421 011245666676 4 3699999999999999999877532
Q ss_pred c----cCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 010136 324 S----YIVFQPQALELCARKVAAASGDMRKALSVCRSAI 358 (517)
Q Consensus 324 ~----~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~ 358 (517)
. .-.+++++++++++......-.+|-.-.+++.-+
T Consensus 670 ~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~ 708 (731)
T TIGR02639 670 NEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEI 708 (731)
T ss_pred HhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHh
Confidence 1 1367899999998853222334555444554444
No 148
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.39 E-value=6.1e-12 Score=126.64 Aligned_cols=189 Identities=22% Similarity=0.258 Sum_probs=124.2
Q ss_pred CCCCcHHHHHHHHHHHHHhhccCCCCe-EEEEcCCCCcHHHHHHHHHHHHHHHHHhcCC--------------CCceEEE
Q 010136 125 TIVCREDEQKKVLEFCKKNLEEEKAGS-LYVCGCPGTGKSLSMEKVQHYLVDWAKEAGL--------------QQPEVFS 189 (517)
Q Consensus 125 ~l~gRe~e~~~l~~~L~~~l~~~~~~~-lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~--------------~~~~~v~ 189 (517)
.+++.+.....+..+.... +..++ ++|+||||+|||+++.++++.+......... ....+++
T Consensus 2 ~~~~~~~~~~~l~~~~~~~---~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~le 78 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES---GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLE 78 (325)
T ss_pred CcccchhHHHHHHHHHHhc---CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEE
Confidence 3566666666677765542 34555 9999999999999999999999843211111 1136788
Q ss_pred EeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhcccCchHHHHHhccCCC
Q 010136 190 INCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF 268 (517)
Q Consensus 190 vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~ 268 (517)
+|......... ..+.++++.... ......+..||+|||+|.|....+++|...++.+
T Consensus 79 l~~s~~~~~~i--------------------~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep-- 136 (325)
T COG0470 79 LNPSDLRKIDI--------------------IVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEP-- 136 (325)
T ss_pred ecccccCCCcc--------------------hHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccC--
Confidence 88877654221 022222222211 1111356689999999999988888888877664
Q ss_pred CCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHH
Q 010136 269 PFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMR 348 (517)
Q Consensus 269 ~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R 348 (517)
..+..+|.++| .+..+.+.++|| | ..+.|.|.+.......+. ++++..++. ...||+|
T Consensus 137 -~~~~~~il~~n---~~~~il~tI~SR-c--~~i~f~~~~~~~~i~~~e------------~~~l~~i~~---~~~gd~r 194 (325)
T COG0470 137 -PKNTRFILITN---DPSKILPTIRSR-C--QRIRFKPPSRLEAIAWLE------------DQGLEEIAA---VAEGDAR 194 (325)
T ss_pred -CCCeEEEEEcC---Chhhccchhhhc-c--eeeecCCchHHHHHHHhh------------ccchhHHHH---HHHHHHH
Confidence 45667777788 577888999999 7 799999933322222211 445555544 5789999
Q ss_pred HHHHHHHHHHHH
Q 010136 349 KALSVCRSAIEI 360 (517)
Q Consensus 349 ~al~ll~~A~~~ 360 (517)
.+++.++.....
T Consensus 195 ~~i~~lq~~~~~ 206 (325)
T COG0470 195 KAINPLQALAAL 206 (325)
T ss_pred cCCCHHHHHHHh
Confidence 999988776644
No 149
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.38 E-value=1.2e-11 Score=129.83 Aligned_cols=224 Identities=16% Similarity=0.194 Sum_probs=130.6
Q ss_pred hcCcCCCCC---CCCCcHHHHHHHHHHHHHhhccCC-CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEE-E
Q 010136 116 ALHVSTAPS---TIVCREDEQKKVLEFCKKNLEEEK-AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFS-I 190 (517)
Q Consensus 116 ~l~~~~~p~---~l~gRe~e~~~l~~~L~~~l~~~~-~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~-v 190 (517)
.|-+.|.|. +|+...+.++++..||...+.+.. ...++|+|||||||||+++.++++++- .+.+ .
T Consensus 8 ~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~----------~v~Ew~ 77 (519)
T PF03215_consen 8 PWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGF----------EVQEWI 77 (519)
T ss_pred ccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCC----------eeEEec
Confidence 455667775 688888999999999998776543 557889999999999999999999863 2332 2
Q ss_pred eCCCCCCHH---HHHHHHHHHhCCCCCCCCCCCHHHHHHHH-HHh-hh-------ccCCCceEEEEEeCcchhcccCchH
Q 010136 191 NCTSLTNTS---EIFSKILLKLQPRKKLNGSTSPLQYLQNL-YSQ-KL-------HSSVMKMMLIIADELDYLITRDRAV 258 (517)
Q Consensus 191 n~~~~~s~~---~i~~~i~~~l~~~~~~~~~~~~~~~l~~~-~~~-~~-------~~~~~~~~vI~iDEiD~L~~~~~~~ 258 (517)
|........ .-|......... -.+....+..+ +.. .. ........||+|+|+..+.......
T Consensus 78 np~~~~~~~~~~~d~~s~~~~~~~------f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~ 151 (519)
T PF03215_consen 78 NPVSFRESDNQEDDFESDFNKFDE------FLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSR 151 (519)
T ss_pred CCCCcccccccccccccccccccc------ccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHH
Confidence 332211000 000000000000 00111122222 111 00 0112456799999999987766555
Q ss_pred HHHHhc-cCCCCCC-cEEEEEEE-CCC----Cc------chhhc-ccccccCCCceEEEeCCCCHHHHHHHHHHHHhhh-
Q 010136 259 LHDLFM-LTTFPFS-RFILIGIA-NAI----DL------ADRFL-PRLQSMNCKPLVVTFRAYSKDQIIRILQERLMEL- 323 (517)
Q Consensus 259 L~~l~~-~~~~~~~-~v~lI~ia-n~~----~~------~~~l~-~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~- 323 (517)
+..++. |...... ++++|..- ... .. .+++. +.+... .+...|.|.|.+..-+...|...+...
T Consensus 152 f~~~L~~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~-~~i~~I~FNpIa~T~mkKaL~rI~~~E~ 230 (519)
T PF03215_consen 152 FREALRQYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNH-PGITRIKFNPIAPTFMKKALKRILKKEA 230 (519)
T ss_pred HHHHHHHHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhC-CCceEEEecCCCHHHHHHHHHHHHHHHh
Confidence 555544 3333334 66666541 110 01 11232 344444 566899999999999999888666532
Q ss_pred ----ccCCCC--hhHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 010136 324 ----SYIVFQ--PQALELCARKVAAASGDMRKALSVCRSAIE 359 (517)
Q Consensus 324 ----~~~~~~--~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~ 359 (517)
...... .+.++.|+. .+.||+|.||+.|+-.+.
T Consensus 231 ~~~~~~~~~p~~~~~l~~I~~---~s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 231 RSSSGKNKVPDKQSVLDSIAE---SSNGDIRSAINNLQFWCL 269 (519)
T ss_pred hhhcCCccCCChHHHHHHHHH---hcCchHHHHHHHHHHHhc
Confidence 111222 234777665 567999999999987764
No 150
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.37 E-value=1.4e-11 Score=114.76 Aligned_cols=206 Identities=17% Similarity=0.239 Sum_probs=134.7
Q ss_pred cCCCCC---CCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhc-CC------------
Q 010136 119 VSTAPS---TIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEA-GL------------ 182 (517)
Q Consensus 119 ~~~~p~---~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~-~~------------ 182 (517)
..|.|. .+.++++.. ..|......+..+++++|||+|+||-|.+..+++++....-+. ..
T Consensus 5 dkyrpksl~~l~~~~e~~----~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kk 80 (351)
T KOG2035|consen 5 DKYRPKSLDELIYHEELA----NLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKK 80 (351)
T ss_pred hhcCcchhhhcccHHHHH----HHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCce
Confidence 445554 355555544 4444444445679999999999999999999999998522110 00
Q ss_pred ------CCceEEEEeCCCCCC-HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC
Q 010136 183 ------QQPEVFSINCTSLTN-TSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD 255 (517)
Q Consensus 183 ------~~~~~v~vn~~~~~s-~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~ 255 (517)
..-.+++++.++... ...+.+.+.+++...... .........|++|-|+|.|..+.
T Consensus 81 lEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qi-----------------e~~~qr~fKvvvi~ead~LT~dA 143 (351)
T KOG2035|consen 81 LEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQI-----------------ETQGQRPFKVVVINEADELTRDA 143 (351)
T ss_pred EEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcch-----------------hhccccceEEEEEechHhhhHHH
Confidence 001123333333222 223444455444221111 01124456799999999999999
Q ss_pred chHHHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHH
Q 010136 256 RAVLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALEL 335 (517)
Q Consensus 256 ~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ 335 (517)
|.+|..-++... +.+-+|.+.|. ..++.+.++|| | --|..+.++.+|+..+|...+.... -.++.+.+..
T Consensus 144 Q~aLRRTMEkYs---~~~RlIl~cns---~SriIepIrSR-C--l~iRvpaps~eeI~~vl~~v~~kE~-l~lp~~~l~r 213 (351)
T KOG2035|consen 144 QHALRRTMEKYS---SNCRLILVCNS---TSRIIEPIRSR-C--LFIRVPAPSDEEITSVLSKVLKKEG-LQLPKELLKR 213 (351)
T ss_pred HHHHHHHHHHHh---cCceEEEEecC---cccchhHHhhh-e--eEEeCCCCCHHHHHHHHHHHHHHhc-ccCcHHHHHH
Confidence 999999887632 23444555674 56788999999 6 4789999999999999998876321 2556666666
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Q 010136 336 CARKVAAASGDMRKALSVCRSAI 358 (517)
Q Consensus 336 ia~~~~~~~Gd~R~al~ll~~A~ 358 (517)
||+ .+.|++|+|+-+|..+.
T Consensus 214 Ia~---kS~~nLRrAllmlE~~~ 233 (351)
T KOG2035|consen 214 IAE---KSNRNLRRALLMLEAVR 233 (351)
T ss_pred HHH---HhcccHHHHHHHHHHHH
Confidence 666 68999999998886654
No 151
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.2e-11 Score=120.71 Aligned_cols=139 Identities=15% Similarity=0.198 Sum_probs=98.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQN 227 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~ 227 (517)
.-.++++|||||||||+.++.+++.-+ ..+....+.+. .+-|......+.+
T Consensus 383 pfRNilfyGPPGTGKTm~ArelAr~SG----------lDYA~mTGGDV-------------------APlG~qaVTkiH~ 433 (630)
T KOG0742|consen 383 PFRNILFYGPPGTGKTMFARELARHSG----------LDYAIMTGGDV-------------------APLGAQAVTKIHK 433 (630)
T ss_pred hhhheeeeCCCCCCchHHHHHHHhhcC----------CceehhcCCCc-------------------cccchHHHHHHHH
Confidence 356899999999999999999876532 23443333332 1223333556777
Q ss_pred HHHhhhccCCCceEEEEEeCcchhcccCc---------hHHHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCC
Q 010136 228 LYSQKLHSSVMKMMLIIADELDYLITRDR---------AVLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCK 298 (517)
Q Consensus 228 ~~~~~~~~~~~~~~vI~iDEiD~L~~~~~---------~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~ 298 (517)
+|+ .....++..+|||||+|.+...+. ..|..|+=........|+++.++| -+..++..+..| +
T Consensus 434 lFD--WakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtN---rpgdlDsAV~DR-i- 506 (630)
T KOG0742|consen 434 LFD--WAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATN---RPGDLDSAVNDR-I- 506 (630)
T ss_pred HHH--HHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccC---CccchhHHHHhh-h-
Confidence 887 334566789999999998865421 345444333333456788888899 588899999998 5
Q ss_pred ceEEEeCCCCHHHHHHHHHHHHhh
Q 010136 299 PLVVTFRAYSKDQIIRILQERLME 322 (517)
Q Consensus 299 ~~~i~f~p~~~~e~~~IL~~rl~~ 322 (517)
.++|+|+-+..+|...+|...+.+
T Consensus 507 de~veFpLPGeEERfkll~lYlnk 530 (630)
T KOG0742|consen 507 DEVVEFPLPGEEERFKLLNLYLNK 530 (630)
T ss_pred hheeecCCCChHHHHHHHHHHHHH
Confidence 469999999999999999988863
No 152
>PF09079 Cdc6_C: CDC6, C terminal ; InterPro: IPR015163 The C-terminal domain of CDC6 assumes a winged helix fold, with a five alpha-helical bundle (alpha15-alpha19) structure, backed on one side by three beta strands (beta6-beta8). It has been shown that this domain acts as a DNA-localisation factor, however its exact function is, as yet, unknown. Putative functions include: (1) mediation of protein-protein interactions and (2) regulation of nucleotide binding and hydrolysis. Mutagenesis studies have shown that this domain is essential for appropriate Cdc6 activity []. ; PDB: 2QBY_A 2V1U_A 1W5T_A 1W5S_B 1FNN_B.
Probab=99.36 E-value=3.6e-12 Score=101.38 Aligned_cols=78 Identities=21% Similarity=0.409 Sum_probs=67.4
Q ss_pred HHHHHHHHhcCC-CCccHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhcCceeec------cCCceeEEEeecCHHH
Q 010136 429 LCSAVKFFRGGK-KDMTVGELNKSYMNICKTSLIPPVGTLEFFSMCRVLHDQGVLKVG------RDDKLKRVTLKADESD 501 (517)
Q Consensus 429 L~al~~l~~~~~-~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~L~~~glI~~~------~~~~~~~~~l~~~~~~ 501 (517)
|+|++.+.+.+. .++++++||+.|+.+|+..+..|+++++|+++|.+|+.+|||... ++|++++|+|.+|+++
T Consensus 1 L~Al~~~~~~~~~~~~~~~~vy~~Y~~lc~~~~~~pls~~r~~~~l~eL~~~gli~~~~~~~G~~~G~~~~~~l~~d~~~ 80 (85)
T PF09079_consen 1 LLALAALLKEGGKEEVTTGEVYEVYEELCESLGVDPLSYRRFSDYLSELEMLGLIESERKGRGRGRGRTREISLNVDPED 80 (85)
T ss_dssp HHHHHHHHHHCTSSSEEHHHHHHHHHHHHHHTTS----HHHHHHHHHHHHHTTSEEEEEEE-TT-CTEEEEEEECSSSHH
T ss_pred CHHHHHHHHhCCCCceeHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCeEEEeecCCCCCCeEEEEEecCCHHH
Confidence 678888877654 899999999999999999999999999999999999999999865 3789999999999999
Q ss_pred HHHHH
Q 010136 502 ITFAL 506 (517)
Q Consensus 502 i~~~l 506 (517)
|.++|
T Consensus 81 v~~aL 85 (85)
T PF09079_consen 81 VLEAL 85 (85)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 99986
No 153
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.36 E-value=1.3e-11 Score=138.67 Aligned_cols=221 Identities=17% Similarity=0.175 Sum_probs=148.3
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhcc----C-CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCC
Q 010136 122 APSTIVCREDEQKKVLEFCKKNLEE----E-KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLT 196 (517)
Q Consensus 122 ~p~~l~gRe~e~~~l~~~L~~~l~~----~-~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~ 196 (517)
+...++|++..++.+...+.....+ . +.+.++|+||+|||||++|+.++..+.... -.+++++|..+.
T Consensus 563 l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~-------~~~i~~d~s~~~ 635 (852)
T TIGR03346 563 LHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDE-------DAMVRIDMSEYM 635 (852)
T ss_pred hhcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCC-------CcEEEEechhhc
Confidence 4457899999999999999876432 1 235689999999999999999998875311 258999998775
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCC--------
Q 010136 197 NTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF-------- 268 (517)
Q Consensus 197 s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~-------- 268 (517)
....+ ..+.+......|......|...+. .....||+||||+.+....++.|+++++....
T Consensus 636 ~~~~~-----~~l~g~~~g~~g~~~~g~l~~~v~------~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~v 704 (852)
T TIGR03346 636 EKHSV-----ARLIGAPPGYVGYEEGGQLTEAVR------RKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTV 704 (852)
T ss_pred ccchH-----HHhcCCCCCccCcccccHHHHHHH------cCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEE
Confidence 53332 222222222223222233444443 23456999999999988888889998865321
Q ss_pred CCCcEEEEEEECCCC----------------------cchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhh---
Q 010136 269 PFSRFILIGIANAID----------------------LADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMEL--- 323 (517)
Q Consensus 269 ~~~~v~lI~ian~~~----------------------~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~--- 323 (517)
.-.+.+||++||.-. ....+.|.+..| + ...+.|.|++.+++.+|+...+..+
T Consensus 705 d~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~R-i-d~IivF~PL~~e~l~~I~~l~L~~l~~~ 782 (852)
T TIGR03346 705 DFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNR-I-DEIVVFHPLGREQIARIVEIQLGRLRKR 782 (852)
T ss_pred ecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcC-c-CeEEecCCcCHHHHHHHHHHHHHHHHHH
Confidence 124677888888511 011133555555 4 3689999999999999988766421
Q ss_pred -c----cCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 010136 324 -S----YIVFQPQALELCARKVAAASGDMRKALSVCRSAIEILE 362 (517)
Q Consensus 324 -~----~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~~a~ 362 (517)
. ...+++++++++++.-....+++|..-+++++.+.-..
T Consensus 783 l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l 826 (852)
T TIGR03346 783 LAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPL 826 (852)
T ss_pred HHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHH
Confidence 1 14689999999988533336788887777777664433
No 154
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.34 E-value=1.2e-11 Score=126.56 Aligned_cols=207 Identities=18% Similarity=0.268 Sum_probs=122.2
Q ss_pred CCCCcHHHHHHHHHHHHHhhcc------------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeC
Q 010136 125 TIVCREDEQKKVLEFCKKNLEE------------EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINC 192 (517)
Q Consensus 125 ~l~gRe~e~~~l~~~L~~~l~~------------~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~ 192 (517)
.++|++...+.+...+...... ....+++|+||||||||++++.+++.+. ..++.++|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~----------~pf~~id~ 141 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD----------VPFAIADA 141 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC----------CCceecch
Confidence 4799999999887666432211 1246899999999999999999987763 36788888
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhccc--------------Cch
Q 010136 193 TSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITR--------------DRA 257 (517)
Q Consensus 193 ~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~--------------~~~ 257 (517)
..+.... +.|......+..++... .......+.||||||||.+... .|.
T Consensus 142 ~~l~~~g----------------yvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~ 205 (412)
T PRK05342 142 TTLTEAG----------------YVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQ 205 (412)
T ss_pred hhcccCC----------------cccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHH
Confidence 7653210 11222222333333210 0001234579999999999754 256
Q ss_pred HHHHHhccC----------CCCCCcEEEEEEECCC-----------------------Ccc------------h------
Q 010136 258 VLHDLFMLT----------TFPFSRFILIGIANAI-----------------------DLA------------D------ 286 (517)
Q Consensus 258 ~L~~l~~~~----------~~~~~~v~lI~ian~~-----------------------~~~------------~------ 286 (517)
.|..+++-. ..+...+++|.++|-+ .|. .
T Consensus 206 ~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~ 285 (412)
T PRK05342 206 ALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQV 285 (412)
T ss_pred HHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhc
Confidence 677777531 0111233444433320 010 0
Q ss_pred --------hhcccccccCCCceEEEeCCCCHHHHHHHHHH----HHhhh--------ccCCCChhHHHHHHHHHHHHhCC
Q 010136 287 --------RFLPRLQSMNCKPLVVTFRAYSKDQIIRILQE----RLMEL--------SYIVFQPQALELCARKVAAASGD 346 (517)
Q Consensus 287 --------~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~----rl~~~--------~~~~~~~~ai~~ia~~~~~~~Gd 346 (517)
.+.|.+..| + +..+.|.|++.+++..|+.. .+..+ -.-.|+++++++|++......-.
T Consensus 286 ~~~dL~~~gf~PEflgR-l-d~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~G 363 (412)
T PRK05342 286 EPEDLIKFGLIPEFIGR-L-PVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTG 363 (412)
T ss_pred CHHHHHHHhhhHHHhCC-C-CeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCC
Confidence 034556666 4 46899999999999999983 22211 11368999999999863232334
Q ss_pred HHHHHHHHHHHHH
Q 010136 347 MRKALSVCRSAIE 359 (517)
Q Consensus 347 ~R~al~ll~~A~~ 359 (517)
+|..-.++...+.
T Consensus 364 AR~Lrriie~~l~ 376 (412)
T PRK05342 364 ARGLRSILEEILL 376 (412)
T ss_pred CchHHHHHHHHhH
Confidence 5554445544443
No 155
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.34 E-value=3.6e-11 Score=120.20 Aligned_cols=188 Identities=12% Similarity=0.164 Sum_probs=121.7
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCC-eEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAG-SLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIF 202 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~-~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~ 202 (517)
++++|.+...+.+...+ ..+..+ ..+|+||+|+|||++++.+++.+.+.......+ .+..+....-.
T Consensus 4 ~~i~g~~~~~~~l~~~~----~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~--D~~~~~~~~~~------ 71 (313)
T PRK05564 4 HTIIGHENIKNRIKNSI----IKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYV--DIIEFKPINKK------ 71 (313)
T ss_pred hhccCcHHHHHHHHHHH----HcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCC--CeEEeccccCC------
Confidence 46789888777766665 334444 557999999999999999999876432111222 33333321100
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECC
Q 010136 203 SKILLKLQPRKKLNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANA 281 (517)
Q Consensus 203 ~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~ 281 (517)
.. ..+.++++.... .....+...|+|||++|.+....++.|...++.+ ...+++|.+++.
T Consensus 72 ---------------~i-~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEep---p~~t~~il~~~~ 132 (313)
T PRK05564 72 ---------------SI-GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEP---PKGVFIILLCEN 132 (313)
T ss_pred ---------------CC-CHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCC---CCCeEEEEEeCC
Confidence 00 022233333210 1112345679999999999877778888777753 345566666653
Q ss_pred CCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHH
Q 010136 282 IDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRS 356 (517)
Q Consensus 282 ~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~ 356 (517)
++.+.+.++|| | +.+.|.+++.+++...|..++. .+++++++.++. .+.|....|+..+..
T Consensus 133 ---~~~ll~TI~SR-c--~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~l~~---~~~g~~~~a~~~~~~ 193 (313)
T PRK05564 133 ---LEQILDTIKSR-C--QIYKLNRLSKEEIEKFISYKYN-----DIKEEEKKSAIA---FSDGIPGKVEKFIED 193 (313)
T ss_pred ---hHhCcHHHHhh-c--eeeeCCCcCHHHHHHHHHHHhc-----CCCHHHHHHHHH---HcCCCHHHHHHHhcc
Confidence 56888999999 7 7999999999999998886653 345666665554 345668877766543
No 156
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.34 E-value=2.3e-11 Score=122.12 Aligned_cols=121 Identities=21% Similarity=0.325 Sum_probs=81.6
Q ss_pred ceEEEEEeCcchhcccC------------chHHHHHhccCC-------CCCCcEEEEEEECCCC--cchhhcccccccCC
Q 010136 239 KMMLIIADELDYLITRD------------RAVLHDLFMLTT-------FPFSRFILIGIANAID--LADRFLPRLQSMNC 297 (517)
Q Consensus 239 ~~~vI~iDEiD~L~~~~------------~~~L~~l~~~~~-------~~~~~v~lI~ian~~~--~~~~l~~~l~sr~~ 297 (517)
..-||||||||.++... |..|..+++-.. ....++.+|+ +...+ -+..+.|.+..| |
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~-~GAF~~~kp~DlIPEl~GR-~ 326 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIA-SGAFHVSKPSDLIPELQGR-F 326 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEe-cCCcCCCChhhccHHHhCc-c
Confidence 34699999999998542 334555554421 1235677776 33322 245678999998 5
Q ss_pred CceEEEeCCCCHHHHHHHHHH----HHhh----h--c--cCCCChhHHHHHHHHHHH-----HhCCHHHHHHHHHHHHHH
Q 010136 298 KPLVVTFRAYSKDQIIRILQE----RLME----L--S--YIVFQPQALELCARKVAA-----ASGDMRKALSVCRSAIEI 360 (517)
Q Consensus 298 ~~~~i~f~p~~~~e~~~IL~~----rl~~----~--~--~~~~~~~ai~~ia~~~~~-----~~Gd~R~al~ll~~A~~~ 360 (517)
|.++.+.+++.+++..||.. .+.+ + . .-.|++++++.||+.... ..-.+|....++....+-
T Consensus 327 -Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d 405 (443)
T PRK05201 327 -PIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLED 405 (443)
T ss_pred -ceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHH
Confidence 67999999999999999953 2221 1 0 236899999999998765 245688777777776654
Q ss_pred HH
Q 010136 361 LE 362 (517)
Q Consensus 361 a~ 362 (517)
++
T Consensus 406 ~~ 407 (443)
T PRK05201 406 IS 407 (443)
T ss_pred Hh
Confidence 43
No 157
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.34 E-value=7.6e-11 Score=118.40 Aligned_cols=122 Identities=22% Similarity=0.310 Sum_probs=81.9
Q ss_pred ceEEEEEeCcchhcccC------------chHHHHHhccCC-------CCCCcEEEEEEECCCC--cchhhcccccccCC
Q 010136 239 KMMLIIADELDYLITRD------------RAVLHDLFMLTT-------FPFSRFILIGIANAID--LADRFLPRLQSMNC 297 (517)
Q Consensus 239 ~~~vI~iDEiD~L~~~~------------~~~L~~l~~~~~-------~~~~~v~lI~ian~~~--~~~~l~~~l~sr~~ 297 (517)
..-||||||||.++.+. |..|..+++-.. ....++.+|+ +.... -+..+.|.+..| |
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~-~GAF~~~kp~DlIPEl~GR-~ 324 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIA-AGAFQLAKPSDLIPELQGR-F 324 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEe-cCCcCCCChhhccHHHhCc-c
Confidence 45699999999998542 344555555421 1235677776 33321 245678999998 5
Q ss_pred CceEEEeCCCCHHHHHHHHHH----HHhh----h--c--cCCCChhHHHHHHHHHHH-----HhCCHHHHHHHHHHHHHH
Q 010136 298 KPLVVTFRAYSKDQIIRILQE----RLME----L--S--YIVFQPQALELCARKVAA-----ASGDMRKALSVCRSAIEI 360 (517)
Q Consensus 298 ~~~~i~f~p~~~~e~~~IL~~----rl~~----~--~--~~~~~~~ai~~ia~~~~~-----~~Gd~R~al~ll~~A~~~ 360 (517)
|.++.+.+++.+++..||.. .+.+ + . .-.|++++++.||+.... ..-.+|....++....+-
T Consensus 325 -Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d 403 (441)
T TIGR00390 325 -PIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLED 403 (441)
T ss_pred -ceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHH
Confidence 67999999999999999942 1111 1 1 237899999999998765 345688777777776654
Q ss_pred HHH
Q 010136 361 LEA 363 (517)
Q Consensus 361 a~~ 363 (517)
+.-
T Consensus 404 ~~f 406 (441)
T TIGR00390 404 ISF 406 (441)
T ss_pred HHh
Confidence 443
No 158
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.33 E-value=9e-12 Score=118.84 Aligned_cols=204 Identities=20% Similarity=0.245 Sum_probs=105.2
Q ss_pred CCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHH-
Q 010136 126 IVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSK- 204 (517)
Q Consensus 126 l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~- 204 (517)
++||++|++.|..++.. +....++|+||+|+|||++++.+.+.+.... ..++|+++........+...
T Consensus 1 F~gR~~el~~l~~~l~~----~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~-------~~~~y~~~~~~~~~~~~~~~~ 69 (234)
T PF01637_consen 1 FFGREKELEKLKELLES----GPSQHILLYGPRGSGKTSLLKEFINELKEKG-------YKVVYIDFLEESNESSLRSFI 69 (234)
T ss_dssp S-S-HHHHHHHHHCHHH------SSEEEEEESTTSSHHHHHHHHHHHCT--E-------ECCCHHCCTTBSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh----hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcC-------CcEEEEecccchhhhHHHHHH
Confidence 58999999999887654 4578999999999999999999988874321 13556666554332221111
Q ss_pred ------------HHHHhCCCCC----CCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhc-c--cCchHHHHHhcc
Q 010136 205 ------------ILLKLQPRKK----LNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLI-T--RDRAVLHDLFML 265 (517)
Q Consensus 205 ------------i~~~l~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~-~--~~~~~L~~l~~~ 265 (517)
+...+..... ..........+..++.... .....+||+|||+|.+. . .....+..+...
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~--~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~ 147 (234)
T PF01637_consen 70 EETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLK--KKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSL 147 (234)
T ss_dssp HHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHH--HCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHH--hcCCcEEEEEecHHHHhhcccchHHHHHHHHHH
Confidence 2222211100 0011112344455444211 23333999999999998 2 223444444333
Q ss_pred C--CCCCCcEEEEEEECCCCcchhh---cccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccC-CCChhHHHHHHHH
Q 010136 266 T--TFPFSRFILIGIANAIDLADRF---LPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYI-VFQPQALELCARK 339 (517)
Q Consensus 266 ~--~~~~~~v~lI~ian~~~~~~~l---~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~-~~~~~ai~~ia~~ 339 (517)
. .....++.+|.++....+...+ ...+..+ + ..+.+.|++.++..+++....... .. .++++.++.+..
T Consensus 148 ~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~-~--~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~- 222 (234)
T PF01637_consen 148 LDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGR-F--SHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYS- 222 (234)
T ss_dssp HHH----TTEEEEEEESSHHHHHHTT-TTSTTTT------EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHH-
T ss_pred HhhccccCCceEEEECCchHHHHHhhcccCccccc-c--ceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHH-
Confidence 1 1123455555545543333221 2334444 3 459999999999999999877654 21 247888877765
Q ss_pred HHHHhCCHHH
Q 010136 340 VAAASGDMRK 349 (517)
Q Consensus 340 ~~~~~Gd~R~ 349 (517)
...|.++.
T Consensus 223 --~~gG~P~~ 230 (234)
T PF01637_consen 223 --LTGGNPRY 230 (234)
T ss_dssp --HHTT-HHH
T ss_pred --HhCCCHHH
Confidence 34555554
No 159
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=4.1e-12 Score=120.64 Aligned_cols=150 Identities=21% Similarity=0.294 Sum_probs=101.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHH-HHHHHHHHhCCCCCCCCCCCHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSE-IFSKILLKLQPRKKLNGSTSPLQYLQN 227 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~-i~~~i~~~l~~~~~~~~~~~~~~~l~~ 227 (517)
.+-++++||||||||++++++++.|.-... ..+.....+++||.++-+++- --.++..++ .+.+++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~-~~y~~~~liEinshsLFSKWFsESgKlV~km------------F~kI~E 243 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTN-DRYYKGQLIEINSHSLFSKWFSESGKLVAKM------------FQKIQE 243 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeec-CccccceEEEEehhHHHHHHHhhhhhHHHHH------------HHHHHH
Confidence 346899999999999999999998863322 122334688999987644432 001111111 334444
Q ss_pred HHHhhhccCCCceEEEEEeCcchhcccC----------------chHHHHHhccCCCCCCcEEEEEEECCCCcchhhccc
Q 010136 228 LYSQKLHSSVMKMMLIIADELDYLITRD----------------RAVLHDLFMLTTFPFSRFILIGIANAIDLADRFLPR 291 (517)
Q Consensus 228 ~~~~~~~~~~~~~~vI~iDEiD~L~~~~----------------~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~ 291 (517)
+++ ..+..+.++|||++.|...+ ..+|.++-++. ...+|++++++| +.+.+|.+
T Consensus 244 Lv~-----d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK--~~~NvliL~TSN---l~~siD~A 313 (423)
T KOG0744|consen 244 LVE-----DRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK--RYPNVLILATSN---LTDSIDVA 313 (423)
T ss_pred HHh-----CCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEeccc---hHHHHHHH
Confidence 443 35667788999999997432 12344443333 235788888888 78889999
Q ss_pred ccccCCCceEEEeCCCCHHHHHHHHHHHHhhh
Q 010136 292 LQSMNCKPLVVTFRAYSKDQIIRILQERLMEL 323 (517)
Q Consensus 292 l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~ 323 (517)
+..| -. -+.+..|++...+++|++..++.+
T Consensus 314 fVDR-AD-i~~yVG~Pt~~ai~~IlkscieEL 343 (423)
T KOG0744|consen 314 FVDR-AD-IVFYVGPPTAEAIYEILKSCIEEL 343 (423)
T ss_pred hhhH-hh-heeecCCccHHHHHHHHHHHHHHH
Confidence 9998 43 488889999999999999988743
No 160
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.30 E-value=4.6e-11 Score=121.69 Aligned_cols=211 Identities=18% Similarity=0.255 Sum_probs=126.7
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcc------C--------CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEE
Q 010136 124 STIVCREDEQKKVLEFCKKNLEE------E--------KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFS 189 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~------~--------~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~ 189 (517)
..++|+++..+.+...+.+.... . ...+++|+||||||||++++.++..+. ..++.
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~----------~pf~~ 146 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN----------VPFAI 146 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC----------CCeEE
Confidence 35799999999887776432221 0 135899999999999999999987663 35677
Q ss_pred EeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhccc--------------
Q 010136 190 INCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITR-------------- 254 (517)
Q Consensus 190 vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~-------------- 254 (517)
+++..+... .+.|......+...+... ..-....+.||+|||+|.+..+
T Consensus 147 ~da~~L~~~----------------gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~ 210 (413)
T TIGR00382 147 ADATTLTEA----------------GYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEG 210 (413)
T ss_pred echhhcccc----------------ccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchh
Confidence 777654211 011222233333333210 0001223469999999999762
Q ss_pred CchHHHHHhccCC----------CCCCcEEEEEEECCC-----------------------Ccc----------------
Q 010136 255 DRAVLHDLFMLTT----------FPFSRFILIGIANAI-----------------------DLA---------------- 285 (517)
Q Consensus 255 ~~~~L~~l~~~~~----------~~~~~v~lI~ian~~-----------------------~~~---------------- 285 (517)
.|..|..+++-.. .+..+.++|.++|-+ .|.
T Consensus 211 vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~ 290 (413)
T TIGR00382 211 VQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQ 290 (413)
T ss_pred HHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHH
Confidence 3566777774211 112345666655541 000
Q ss_pred -------h-hhcccccccCCCceEEEeCCCCHHHHHHHHHHHH----hhh----c----cCCCChhHHHHHHHHHHHHhC
Q 010136 286 -------D-RFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERL----MEL----S----YIVFQPQALELCARKVAAASG 345 (517)
Q Consensus 286 -------~-~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl----~~~----~----~~~~~~~ai~~ia~~~~~~~G 345 (517)
. .+.|.+..| + +..+.|.|++.+++..|+...+ ..+ . .-.|++++++++++......-
T Consensus 291 ~~~~dl~~~g~~PEflgR-l-d~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~ 368 (413)
T TIGR00382 291 VEPEDLVKFGLIPEFIGR-L-PVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKT 368 (413)
T ss_pred HHHHHHHHHhhHHHHhCC-C-CeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCC
Confidence 0 134666666 4 4588999999999999987632 111 0 136789999999986433333
Q ss_pred CHHHHHHHHHHHHHHHH
Q 010136 346 DMRKALSVCRSAIEILE 362 (517)
Q Consensus 346 d~R~al~ll~~A~~~a~ 362 (517)
.+|..-.++++.+.-++
T Consensus 369 GAR~Lr~iie~~l~~~m 385 (413)
T TIGR00382 369 GARGLRSIVEGLLLDVM 385 (413)
T ss_pred CchHHHHHHHHhhHHHH
Confidence 46655556655554333
No 161
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.30 E-value=3.9e-11 Score=134.25 Aligned_cols=217 Identities=17% Similarity=0.193 Sum_probs=139.1
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhcc----CCC-CeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCC
Q 010136 122 APSTIVCREDEQKKVLEFCKKNLEE----EKA-GSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLT 196 (517)
Q Consensus 122 ~p~~l~gRe~e~~~l~~~L~~~l~~----~~~-~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~ 196 (517)
+...++|++..++.+...+.....+ ..+ ++++|+||+|||||++++++++.+... + -.+++++|..+.
T Consensus 566 l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~----~---~~~i~id~se~~ 638 (857)
T PRK10865 566 LHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS----D---DAMVRIDMSEFM 638 (857)
T ss_pred hCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC----C---CcEEEEEhHHhh
Confidence 4456899999999999999876422 122 478999999999999999999887531 1 247899997764
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCC--------
Q 010136 197 NTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF-------- 268 (517)
Q Consensus 197 s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~-------- 268 (517)
.... ...+.+....+.|......+...+. .....||+|||++.+....++.|+++++....
T Consensus 639 ~~~~-----~~~LiG~~pgy~g~~~~g~l~~~v~------~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~v 707 (857)
T PRK10865 639 EKHS-----VSRLVGAPPGYVGYEEGGYLTEAVR------RRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTV 707 (857)
T ss_pred hhhh-----HHHHhCCCCcccccchhHHHHHHHH------hCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEE
Confidence 3222 2223232222223222223444333 23347999999999988888888888865321
Q ss_pred CCCcEEEEEEECCC-C---------------------cchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhc--
Q 010136 269 PFSRFILIGIANAI-D---------------------LADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELS-- 324 (517)
Q Consensus 269 ~~~~v~lI~ian~~-~---------------------~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~-- 324 (517)
.-.+.++|+++|.- + ....+.|.+.+| + ...+.|.|++.+++..|+...+..+.
T Consensus 708 d~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnR-l-d~iivF~PL~~edl~~Iv~~~L~~l~~r 785 (857)
T PRK10865 708 DFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINR-I-DEVVVFHPLGEQHIASIAQIQLQRLYKR 785 (857)
T ss_pred eecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHh-C-CeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 12355688878851 0 011234667777 4 36999999999999999887775321
Q ss_pred ------cCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 010136 325 ------YIVFQPQALELCARKVAAASGDMRKALSVCRSAI 358 (517)
Q Consensus 325 ------~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~ 358 (517)
...+++++++++++.-....-.+|-.-.+++.-+
T Consensus 786 l~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i 825 (857)
T PRK10865 786 LEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQI 825 (857)
T ss_pred HHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHH
Confidence 1357999999998742111123554444444433
No 162
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.29 E-value=3.2e-11 Score=119.95 Aligned_cols=252 Identities=18% Similarity=0.173 Sum_probs=144.8
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHH
Q 010136 123 PSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIF 202 (517)
Q Consensus 123 p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~ 202 (517)
+..++|+++..+.+.-.+.. ...++++|+|+||||||++++.++..+.......+.+ +.+..+.+........ .
T Consensus 7 f~~i~Gq~~~~~~l~~~~~~----~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~-~~~~~~~~~~~~~~~~-~ 80 (334)
T PRK13407 7 FSAIVGQEEMKQAMVLTAID----PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCP-VNSARPEDCPEWAHVS-S 80 (334)
T ss_pred HHHhCCHHHHHHHHHHHHhc----cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccc-cccCcccCCccccccc-C
Confidence 34688999877666543221 2347899999999999999999998875322211111 1111111110000000 0
Q ss_pred HHHHHHhCCCCCCCCCCC-----HHHHHHHH-------HHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCC---
Q 010136 203 SKILLKLQPRKKLNGSTS-----PLQYLQNL-------YSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTT--- 267 (517)
Q Consensus 203 ~~i~~~l~~~~~~~~~~~-----~~~~l~~~-------~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~--- 267 (517)
..+...-..-...+.+.. ..-.+... |...... ....-+|+|||++.+....|..|.+.++...
T Consensus 81 ~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~-~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v~v 159 (334)
T PRK13407 81 TTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLA-RANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVV 159 (334)
T ss_pred CcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceE-EcCCCeEEecChHhCCHHHHHHHHHHHHcCCeEE
Confidence 000000000000000000 00011111 1111110 1122489999999998888888888876432
Q ss_pred -------CCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCH-HHHHHHHHHHHhh-----------------
Q 010136 268 -------FPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSK-DQIIRILQERLME----------------- 322 (517)
Q Consensus 268 -------~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~-~e~~~IL~~rl~~----------------- 322 (517)
....++++|++.|..+ ..+.+.+..| |.. .+.+.+... ++..+|+..+...
T Consensus 160 ~r~G~~~~~p~rfiviAt~NP~e--~~l~~aLldR-F~~-~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~ 235 (334)
T PRK13407 160 EREGLSIRHPARFVLVGSGNPEE--GELRPQLLDR-FGL-SVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQ 235 (334)
T ss_pred EECCeEEecCCCEEEEecCCccc--CCCCHHHHhh-cce-EEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccC
Confidence 1235789999888532 2356677777 654 555555444 7777777754320
Q ss_pred -----------hccCCCChhHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhh
Q 010136 323 -----------LSYIVFQPQALELCARKVAAAS-GDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAF 390 (517)
Q Consensus 323 -----------~~~~~~~~~ai~~ia~~~~~~~-Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (517)
+....++++.++++++.+.... ...|-.+.+++.|...|..++++
T Consensus 236 ~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l~Gr~----------------------- 292 (334)
T PRK13407 236 LRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAFEGAE----------------------- 292 (334)
T ss_pred CHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHcCCC-----------------------
Confidence 1224578888999988776544 37899999999999999999988
Q ss_pred hccCccccHHHHHHHHHHhccCh
Q 010136 391 EFFNSQVRVDHMAVALSNTFKSP 413 (517)
Q Consensus 391 ~~~~~~Vt~~~v~~a~~~~~~~~ 413 (517)
.|+.+||..+..-+....
T Consensus 293 -----~V~~~Di~~~~~~vl~hR 310 (334)
T PRK13407 293 -----AVGRSHLRSVATMALSHR 310 (334)
T ss_pred -----eeCHHHHHHHHHHhhhhh
Confidence 899999988875554433
No 163
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.29 E-value=5.1e-11 Score=116.78 Aligned_cols=110 Identities=20% Similarity=0.224 Sum_probs=68.5
Q ss_pred ceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCCC---------cchhhcccccccCCCceEEEeCCCCH
Q 010136 239 KMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAID---------LADRFLPRLQSMNCKPLVVTFRAYSK 309 (517)
Q Consensus 239 ~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~---------~~~~l~~~l~sr~~~~~~i~f~p~~~ 309 (517)
-|-||||||+|.|.-..-..|...++. +-++++++ +||.-. -+.-+...+.+| + -.|.-.||+.
T Consensus 278 vpGVLFIDEvHmLDiEcFsfLnralEs---~~sPiiIl-ATNRg~~~irGt~~~sphGiP~DlLDR-l--lII~t~py~~ 350 (398)
T PF06068_consen 278 VPGVLFIDEVHMLDIECFSFLNRALES---ELSPIIIL-ATNRGITKIRGTDIISPHGIPLDLLDR-L--LIIRTKPYSE 350 (398)
T ss_dssp EE-EEEEESGGGSBHHHHHHHHHHHTS---TT--EEEE-EES-SEEE-BTTS-EEETT--HHHHTT-E--EEEEE----H
T ss_pred ecceEEecchhhccHHHHHHHHHHhcC---CCCcEEEE-ecCceeeeccCccCcCCCCCCcchHhh-c--EEEECCCCCH
Confidence 367999999999965544555555544 33455554 478421 122223345666 4 4889999999
Q ss_pred HHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 010136 310 DQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRSAI 358 (517)
Q Consensus 310 ~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~ 358 (517)
+|+.+||..|++. +...+++++++++++. +....+|.|++++.-|.
T Consensus 351 ~ei~~Il~iR~~~-E~v~i~~~al~~L~~i--g~~~SLRYAiqLi~~a~ 396 (398)
T PF06068_consen 351 EEIKQILKIRAKE-EDVEISEDALDLLTKI--GVETSLRYAIQLITPAS 396 (398)
T ss_dssp HHHHHHHHHHHHH-CT--B-HHHHHHHHHH--HHHS-HHHHHHCHHHHH
T ss_pred HHHHHHHHhhhhh-hcCcCCHHHHHHHHHH--hhhccHHHHHHhhhhhh
Confidence 9999999999874 3358899999999975 46778999999887653
No 164
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.29 E-value=6.1e-11 Score=132.87 Aligned_cols=217 Identities=12% Similarity=0.123 Sum_probs=141.6
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhcc----CC-CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCC
Q 010136 122 APSTIVCREDEQKKVLEFCKKNLEE----EK-AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLT 196 (517)
Q Consensus 122 ~p~~l~gRe~e~~~l~~~L~~~l~~----~~-~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~ 196 (517)
+...++|++..++.|...+.....+ .+ .++++|+||+|||||.+++.+++.+.... ..++.+++..+.
T Consensus 507 L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~-------~~~~~~d~s~~~ 579 (821)
T CHL00095 507 LHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSE-------DAMIRLDMSEYM 579 (821)
T ss_pred hcCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCc-------cceEEEEchhcc
Confidence 3456899999999999998765432 12 24688999999999999999999875321 257888887765
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCC--------
Q 010136 197 NTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF-------- 268 (517)
Q Consensus 197 s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~-------- 268 (517)
....+ ..+.+...++.|......|...+. .....||+|||||.+....++.|+++++....
T Consensus 580 ~~~~~-----~~l~g~~~gyvg~~~~~~l~~~~~------~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v 648 (821)
T CHL00095 580 EKHTV-----SKLIGSPPGYVGYNEGGQLTEAVR------KKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTI 648 (821)
T ss_pred ccccH-----HHhcCCCCcccCcCccchHHHHHH------hCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEE
Confidence 54432 112222222333332334555543 34458999999999988888889998876321
Q ss_pred CCCcEEEEEEECCCC-----------cc-----------------------hhhcccccccCCCceEEEeCCCCHHHHHH
Q 010136 269 PFSRFILIGIANAID-----------LA-----------------------DRFLPRLQSMNCKPLVVTFRAYSKDQIIR 314 (517)
Q Consensus 269 ~~~~v~lI~ian~~~-----------~~-----------------------~~l~~~l~sr~~~~~~i~f~p~~~~e~~~ 314 (517)
.-.+.++|+++|.-. |. ..+.|.+.+| + ...|.|.|++.+++..
T Consensus 649 ~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnR-i-d~ii~F~pL~~~~l~~ 726 (821)
T CHL00095 649 DFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNR-L-DEIIVFRQLTKNDVWE 726 (821)
T ss_pred ecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhcc-C-CeEEEeCCCCHHHHHH
Confidence 235788898887421 10 0123556666 4 3589999999999999
Q ss_pred HHHHHHhhh----c----cCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 010136 315 ILQERLMEL----S----YIVFQPQALELCARKVAAASGDMRKALSVCRSAI 358 (517)
Q Consensus 315 IL~~rl~~~----~----~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~ 358 (517)
|+...+..+ . .-.+++++++++++......-.+|-.-.+++.-+
T Consensus 727 Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i 778 (821)
T CHL00095 727 IAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLL 778 (821)
T ss_pred HHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHH
Confidence 998777532 1 1367899999998853222223554444444433
No 165
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=99.29 E-value=1.4e-11 Score=106.61 Aligned_cols=121 Identities=25% Similarity=0.347 Sum_probs=78.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQN 227 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~ 227 (517)
..+.++|+|+||+|||++++.+++.+.......+ ...+++++|....+...++..|+.+++..... ... ...+.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~-~~~l~~ 77 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKN--HPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQT-SDELRS 77 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC--CEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS--HHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccC--CCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCC-HHHHHH
Confidence 4578999999999999999999999876443322 35789999999889999999999999766544 222 232333
Q ss_pred HHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEE
Q 010136 228 LYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIG 277 (517)
Q Consensus 228 ~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ 277 (517)
.+.+... .....+|+|||+|+|. ..+.+..|..+......+++++|
T Consensus 78 ~~~~~l~--~~~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G 123 (131)
T PF13401_consen 78 LLIDALD--RRRVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVG 123 (131)
T ss_dssp HHHHHHH--HCTEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEE
T ss_pred HHHHHHH--hcCCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEE
Confidence 3332221 2333799999999985 35555555544443334444444
No 166
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.28 E-value=7.7e-11 Score=120.75 Aligned_cols=226 Identities=14% Similarity=0.099 Sum_probs=138.7
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHH
Q 010136 123 PSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIF 202 (517)
Q Consensus 123 p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~ 202 (517)
-..++||++.++.+...+. .+++++|.||||||||++|+.++..+... + .|.+++|.-. ++.+++
T Consensus 19 ~~~i~gre~vI~lll~aal------ag~hVLL~GpPGTGKT~LAraLa~~~~~~----~----~F~~~~~~ft-tp~DLf 83 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAAL------SGESVFLLGPPGIAKSLIARRLKFAFQNA----R----AFEYLMTRFS-TPEEVF 83 (498)
T ss_pred hhhccCcHHHHHHHHHHHc------cCCCEEEECCCChhHHHHHHHHHHHhccc----C----cceeeeeeec-CcHHhc
Confidence 3468999998877766643 46899999999999999999998876421 1 2344444321 234433
Q ss_pred HHH-HHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCC--------CCCcE
Q 010136 203 SKI-LLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF--------PFSRF 273 (517)
Q Consensus 203 ~~i-~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~--------~~~~v 273 (517)
..+ ...... .+ .+.. +... .-...-+||+|||..+....|..|..+++.... -..++
T Consensus 84 G~l~i~~~~~-----~g-----~f~r-~~~G---~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rf 149 (498)
T PRK13531 84 GPLSIQALKD-----EG-----RYQR-LTSG---YLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRL 149 (498)
T ss_pred CcHHHhhhhh-----cC-----chhh-hcCC---ccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcE
Confidence 221 111100 00 0111 1100 000123999999999988888888888754221 11233
Q ss_pred EEEEEECCCCcch--hhcccccccCCCceEEEeCCCC-HHHHHHHHHHHHhh----------------------hccCCC
Q 010136 274 ILIGIANAIDLAD--RFLPRLQSMNCKPLVVTFRAYS-KDQIIRILQERLME----------------------LSYIVF 328 (517)
Q Consensus 274 ~lI~ian~~~~~~--~l~~~l~sr~~~~~~i~f~p~~-~~e~~~IL~~rl~~----------------------~~~~~~ 328 (517)
++ +++|. +++ .+.+.+..| | ...+.+++++ .++..++|...... .....+
T Consensus 150 iv-~ATN~--LPE~g~~leAL~DR-F-liri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v 224 (498)
T PRK13531 150 LV-TASNE--LPEADSSLEALYDR-M-LIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITL 224 (498)
T ss_pred EE-EECCC--CcccCCchHHhHhh-E-EEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeC
Confidence 33 44564 443 345567777 5 4588888886 45667787643210 112455
Q ss_pred ChhHHHHHHHHHHHH---h----CCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHH
Q 010136 329 QPQALELCARKVAAA---S----GDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDH 401 (517)
Q Consensus 329 ~~~ai~~ia~~~~~~---~----Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~ 401 (517)
++.+++++.+.+... . -..|..+.+++.|-..|...++. .|+.+|
T Consensus 225 ~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~----------------------------~V~p~D 276 (498)
T PRK13531 225 PDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRD----------------------------AIAPID 276 (498)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCC----------------------------CCCHHH
Confidence 777788888776531 1 35788888888888888888887 899999
Q ss_pred HHHHHHHhcc
Q 010136 402 MAVALSNTFK 411 (517)
Q Consensus 402 v~~a~~~~~~ 411 (517)
|. .+..+..
T Consensus 277 v~-ll~~vL~ 285 (498)
T PRK13531 277 LI-LLKDCLW 285 (498)
T ss_pred HH-HhHHHhc
Confidence 99 5555443
No 167
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=4e-11 Score=128.72 Aligned_cols=217 Identities=16% Similarity=0.165 Sum_probs=154.9
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhccC-----CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCC
Q 010136 122 APSTIVCREDEQKKVLEFCKKNLEEE-----KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLT 196 (517)
Q Consensus 122 ~p~~l~gRe~e~~~l~~~L~~~l~~~-----~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~ 196 (517)
+-..++|+++.+..+.+.+.....+- +.+++++.||.|+|||-++++++..|.... -..+.++.+.+.
T Consensus 489 L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e-------~aliR~DMSEy~ 561 (786)
T COG0542 489 LKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE-------QALIRIDMSEYM 561 (786)
T ss_pred HhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC-------ccceeechHHHH
Confidence 34568999999999999998865432 245899999999999999999999987321 257899998876
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCC--------
Q 010136 197 NTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF-------- 268 (517)
Q Consensus 197 s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~-------- 268 (517)
....+ ..|-+..+++.|......|.+.+. .+.+.||+||||+...++-.+.|+++++-...
T Consensus 562 EkHsV-----SrLIGaPPGYVGyeeGG~LTEaVR------r~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~V 630 (786)
T COG0542 562 EKHSV-----SRLIGAPPGYVGYEEGGQLTEAVR------RKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTV 630 (786)
T ss_pred HHHHH-----HHHhCCCCCCceeccccchhHhhh------cCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEE
Confidence 66553 555566666655554555666664 55678999999999988888999999987322
Q ss_pred CCCcEEEEEEECCCC-------------------------cchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhh
Q 010136 269 PFSRFILIGIANAID-------------------------LADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMEL 323 (517)
Q Consensus 269 ~~~~v~lI~ian~~~-------------------------~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~ 323 (517)
.-.+.++|+++|-=. +...+.|.+..| + ...|.|.|++.+.+.+|+...+..+
T Consensus 631 dFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNR-i-d~II~F~~L~~~~l~~Iv~~~L~~l 708 (786)
T COG0542 631 DFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNR-I-DEIIPFNPLSKEVLERIVDLQLNRL 708 (786)
T ss_pred ecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhh-c-ccEEeccCCCHHHHHHHHHHHHHHH
Confidence 225788899888420 011123555566 4 3499999999999999988877532
Q ss_pred c--------cCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 010136 324 S--------YIVFQPQALELCARKVAAASGDMRKALSVCRSAI 358 (517)
Q Consensus 324 ~--------~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~ 358 (517)
. .-.+++++.++++.+.......+|-...+++.-+
T Consensus 709 ~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i 751 (786)
T COG0542 709 AKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEI 751 (786)
T ss_pred HHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHH
Confidence 1 1367899999999865444445665555555444
No 168
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.28 E-value=7e-11 Score=117.85 Aligned_cols=179 Identities=17% Similarity=0.181 Sum_probs=111.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCC-----CCCCCCCHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRK-----KLNGSTSPLQ 223 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~-----~~~~~~~~~~ 223 (517)
+..++|+||+|+|||++++.+++.+.......+. .|....+-..+ ...-.... .........+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~--------~Cg~C~sC~~~----~~g~HPD~~~i~~~~~~~~i~id 89 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGG--------ACGSCKGCQLL----RAGSHPDNFVLEPEEADKTIKVD 89 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCC--------CCCCCHHHHHH----hcCCCCCEEEEeccCCCCCCCHH
Confidence 4568899999999999999999998753211000 12211111111 00000000 0000011144
Q ss_pred HHHHHHHhhh-ccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEE
Q 010136 224 YLQNLYSQKL-HSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVV 302 (517)
Q Consensus 224 ~l~~~~~~~~-~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i 302 (517)
.++++..... ....++..|+||||+|.|....++.|...++.+ ..++.+|.+|+. ++.+.|.++|| | +.+
T Consensus 90 ~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEP---p~~~~fiL~t~~---~~~ll~TI~SR-c--~~~ 160 (328)
T PRK05707 90 QVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEP---SGDTVLLLISHQ---PSRLLPTIKSR-C--QQQ 160 (328)
T ss_pred HHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCC---CCCeEEEEEECC---hhhCcHHHHhh-c--eee
Confidence 5555443211 222455678899999999888888888888764 356777777874 67789999999 7 789
Q ss_pred EeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHH
Q 010136 303 TFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRS 356 (517)
Q Consensus 303 ~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~ 356 (517)
.|.|++.+++.+.|..+.. ..+++....+++ .+.|.+..|+.++..
T Consensus 161 ~~~~~~~~~~~~~L~~~~~-----~~~~~~~~~~l~---la~Gsp~~A~~l~~~ 206 (328)
T PRK05707 161 ACPLPSNEESLQWLQQALP-----ESDERERIELLT---LAGGSPLRALQLHEQ 206 (328)
T ss_pred eCCCcCHHHHHHHHHHhcc-----cCChHHHHHHHH---HcCCCHHHHHHHHCc
Confidence 9999999999999986542 223444444443 478899999887643
No 169
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.27 E-value=6.4e-11 Score=103.91 Aligned_cols=147 Identities=17% Similarity=0.120 Sum_probs=89.8
Q ss_pred CcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHH
Q 010136 128 CREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILL 207 (517)
Q Consensus 128 gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~ 207 (517)
|++.++..+...+. .....+++|+|+||||||++++.+++.+.. . ...++++++............+..
T Consensus 2 ~~~~~~~~i~~~~~----~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~----~---~~~v~~~~~~~~~~~~~~~~~~~~ 70 (151)
T cd00009 2 GQEEAIEALREALE----LPPPKNLLLYGPPGTGKTTLARAIANELFR----P---GAPFLYLNASDLLEGLVVAELFGH 70 (151)
T ss_pred chHHHHHHHHHHHh----CCCCCeEEEECCCCCCHHHHHHHHHHHhhc----C---CCCeEEEehhhhhhhhHHHHHhhh
Confidence 56666666655543 345678999999999999999999988752 1 146888988776544332211110
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCC---CCCcEEEEEEECCCCc
Q 010136 208 KLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF---PFSRFILIGIANAIDL 284 (517)
Q Consensus 208 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~---~~~~v~lI~ian~~~~ 284 (517)
. ....... ......+.+|+|||++.+.......+..++..... ....+.+|+++|....
T Consensus 71 ~-------------~~~~~~~-----~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~ 132 (151)
T cd00009 71 F-------------LVRLLFE-----LAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLL 132 (151)
T ss_pred h-------------hHhHHHH-----hhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcccc
Confidence 0 0001111 11244568999999999844444445555544322 1357888888886442
Q ss_pred chhhcccccccCCCceEEEeCC
Q 010136 285 ADRFLPRLQSMNCKPLVVTFRA 306 (517)
Q Consensus 285 ~~~l~~~l~sr~~~~~~i~f~p 306 (517)
..+.+.+.+| +. .++.|+|
T Consensus 133 -~~~~~~~~~r-~~-~~i~~~~ 151 (151)
T cd00009 133 -GDLDRALYDR-LD-IRIVIPL 151 (151)
T ss_pred -CCcChhHHhh-hc-cEeecCC
Confidence 3566777777 53 4676654
No 170
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.9e-10 Score=119.55 Aligned_cols=184 Identities=20% Similarity=0.247 Sum_probs=126.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQN 227 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~ 227 (517)
..+++||+||+|+|||.+++++++++.... ...+.+++|..+.... +..| .+.+..
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~------~~hv~~v~Cs~l~~~~--~e~i----------------Qk~l~~ 485 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDL------IAHVEIVSCSTLDGSS--LEKI----------------QKFLNN 485 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhcccc------ceEEEEEechhccchh--HHHH----------------HHHHHH
Confidence 468999999999999999999999886321 2567889998874332 1111 333455
Q ss_pred HHHhhhccCCCceEEEEEeCcchhcccC-----c---------hHHHHHhccCCCCCCcEEEEEEECCCCcchhhccccc
Q 010136 228 LYSQKLHSSVMKMMLIIADELDYLITRD-----R---------AVLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQ 293 (517)
Q Consensus 228 ~~~~~~~~~~~~~~vI~iDEiD~L~~~~-----~---------~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~ 293 (517)
.|.+. -...|.||+||++|.|.... | ..|+++.......+..+.||+..+. ...+.+.|.
T Consensus 486 vfse~---~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe---~qtl~~~L~ 559 (952)
T KOG0735|consen 486 VFSEA---LWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQE---LQTLNPLLV 559 (952)
T ss_pred HHHHH---HhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechh---hhhcChhhc
Confidence 55532 25678999999999998731 1 2355555554556677899998774 455677777
Q ss_pred ccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHH
Q 010136 294 SMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASG-DMRKALSVCRSAIEILEAEM 365 (517)
Q Consensus 294 sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~G-d~R~al~ll~~A~~~a~~~~ 365 (517)
+..+...++.++++...+..+||+.-+.... .....+.+++++.+ ..| +++....+..+|+..|..+.
T Consensus 560 s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~-~~~~~~dLd~ls~~---TEGy~~~DL~ifVeRai~~a~ler 628 (952)
T KOG0735|consen 560 SPLLFQIVIALPAPAVTRRKEILTTIFSKNL-SDITMDDLDFLSVK---TEGYLATDLVIFVERAIHEAFLER 628 (952)
T ss_pred CccceEEEEecCCcchhHHHHHHHHHHHhhh-hhhhhHHHHHHHHh---cCCccchhHHHHHHHHHHHHHHHH
Confidence 7645556899999999999999998876421 23345557777664 344 45665667788887776443
No 171
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.27 E-value=7.4e-11 Score=118.38 Aligned_cols=197 Identities=17% Similarity=0.201 Sum_probs=117.5
Q ss_pred CCCCC-cHHHHHHHHHHHHHhhccCCCCe-EEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHH
Q 010136 124 STIVC-REDEQKKVLEFCKKNLEEEKAGS-LYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEI 201 (517)
Q Consensus 124 ~~l~g-Re~e~~~l~~~L~~~l~~~~~~~-lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i 201 (517)
+.++| .+..++.+... +..++.++ ++|+||+|+|||++++.+++.+.......+. .|....+...+
T Consensus 5 ~~i~~~q~~~~~~L~~~----~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~--------~cg~C~~c~~~ 72 (329)
T PRK08058 5 EQLTALQPVVVKMLQNS----IAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE--------PCGTCTNCKRI 72 (329)
T ss_pred HHHHhhHHHHHHHHHHH----HHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC--------CCCcCHHHHHH
Confidence 34566 55555544444 44455454 5899999999999999999887642110000 01111110100
Q ss_pred HHHHHHHhCCCC---CCCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEE
Q 010136 202 FSKILLKLQPRK---KLNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIG 277 (517)
Q Consensus 202 ~~~i~~~l~~~~---~~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ 277 (517)
...-.... .........+.++.+.... .....+...|+||||+|.+....++.|...++.+ ...+++|.
T Consensus 73 ----~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEP---p~~~~~Il 145 (329)
T PRK08058 73 ----DSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEP---SGGTTAIL 145 (329)
T ss_pred ----hcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCC---CCCceEEE
Confidence 00000000 0000001133444443321 1112345679999999999877778887777663 45667777
Q ss_pred EECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHH
Q 010136 278 IANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRS 356 (517)
Q Consensus 278 ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~ 356 (517)
+++. +.++.+.++|| + ..+.|.+++.+++.++|... .++++...+++. ..|++..|+.++..
T Consensus 146 ~t~~---~~~ll~TIrSR-c--~~i~~~~~~~~~~~~~L~~~-------gi~~~~~~~l~~----~~g~~~~A~~l~~~ 207 (329)
T PRK08058 146 LTEN---KHQILPTILSR-C--QVVEFRPLPPESLIQRLQEE-------GISESLATLLAG----LTNSVEEALALSED 207 (329)
T ss_pred EeCC---hHhCcHHHHhh-c--eeeeCCCCCHHHHHHHHHHc-------CCChHHHHHHHH----HcCCHHHHHHHhcC
Confidence 7773 67888999999 7 79999999999998888642 245555445443 46889999887743
No 172
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.24 E-value=3.8e-09 Score=104.71 Aligned_cols=180 Identities=11% Similarity=0.117 Sum_probs=114.8
Q ss_pred HHHHHHhhccCC-CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCC--------------CCceEEEEeCCCCCCHHHH
Q 010136 137 LEFCKKNLEEEK-AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGL--------------QQPEVFSINCTSLTNTSEI 201 (517)
Q Consensus 137 ~~~L~~~l~~~~-~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~--------------~~~~~v~vn~~~~~s~~~i 201 (517)
...|...+..++ +..++|+||+|+||+++++.+++.+.+.....+. .++.+.++....
T Consensus 11 ~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~------- 83 (325)
T PRK06871 11 YQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID------- 83 (325)
T ss_pred HHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc-------
Confidence 334444455555 4456699999999999999999998753211000 011222221100
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEEC
Q 010136 202 FSKILLKLQPRKKLNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIAN 280 (517)
Q Consensus 202 ~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian 280 (517)
. ..-..+.++++.... .....++..|+|||++|.|....++.|...++.+ ..++.+|.+++
T Consensus 84 ------------~---~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEP---p~~~~fiL~t~ 145 (325)
T PRK06871 84 ------------N---KDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEP---RPNTYFLLQAD 145 (325)
T ss_pred ------------C---CCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCC---CCCeEEEEEEC
Confidence 0 001144445443321 2233466789999999999888888888888774 45667777777
Q ss_pred CCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHH
Q 010136 281 AIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRS 356 (517)
Q Consensus 281 ~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~ 356 (517)
. ++.+.|.++|| | +.+.|.|++.+++.+.|..... .++..+..+++ ...|.+..|+.++..
T Consensus 146 ~---~~~llpTI~SR-C--~~~~~~~~~~~~~~~~L~~~~~------~~~~~~~~~~~---l~~g~p~~A~~~~~~ 206 (325)
T PRK06871 146 L---SAALLPTIYSR-C--QTWLIHPPEEQQALDWLQAQSS------AEISEILTALR---INYGRPLLALTFLEQ 206 (325)
T ss_pred C---hHhCchHHHhh-c--eEEeCCCCCHHHHHHHHHHHhc------cChHHHHHHHH---HcCCCHHHHHHHhhC
Confidence 3 77899999999 7 7999999999999998886532 12222333332 466788888777644
No 173
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.24 E-value=1.7e-10 Score=115.16 Aligned_cols=142 Identities=20% Similarity=0.204 Sum_probs=103.5
Q ss_pred eEEEEEeCcchhcccCchHHHHHhccCC----------CCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCC-C
Q 010136 240 MMLIIADELDYLITRDRAVLHDLFMLTT----------FPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAY-S 308 (517)
Q Consensus 240 ~~vI~iDEiD~L~~~~~~~L~~l~~~~~----------~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~-~ 308 (517)
.-+|+|||++.|....|..|.++++... ....++++|++.|.. ...+.+.+..| |.. .+.+.++ +
T Consensus 132 ~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~--eg~l~~~LldR-f~l-~i~l~~p~~ 207 (337)
T TIGR02030 132 RGILYIDEVNLLEDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPE--EGELRPQLLDR-FGL-HAEIRTVRD 207 (337)
T ss_pred CCEEEecChHhCCHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccc--cCCCCHHHHhh-cce-EEECCCCCC
Confidence 3589999999998888888877775321 123578888877743 22466778888 655 4455444 4
Q ss_pred HHHHHHHHHHHHhh----------------------------hccCCCChhHHHHHHHHHHHHhC-CHHHHHHHHHHHHH
Q 010136 309 KDQIIRILQERLME----------------------------LSYIVFQPQALELCARKVAAASG-DMRKALSVCRSAIE 359 (517)
Q Consensus 309 ~~e~~~IL~~rl~~----------------------------~~~~~~~~~ai~~ia~~~~~~~G-d~R~al~ll~~A~~ 359 (517)
.++..+|+..+... +....++++++++++..+..... ..|..+.+++.|-.
T Consensus 208 ~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA 287 (337)
T TIGR02030 208 VELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKA 287 (337)
T ss_pred HHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Confidence 47777887763211 12345788899999987766555 47999999999999
Q ss_pred HHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccCh
Q 010136 360 ILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSP 413 (517)
Q Consensus 360 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~ 413 (517)
.|..+++. .|+.+||..+..-+....
T Consensus 288 ~Aal~GR~----------------------------~V~~dDv~~~a~~vL~HR 313 (337)
T TIGR02030 288 LAAFEGRT----------------------------EVTVDDIRRVAVLALRHR 313 (337)
T ss_pred HHHHcCCC----------------------------CCCHHHHHHHHHHHHHHh
Confidence 99999988 899999999987776554
No 174
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.24 E-value=2.3e-10 Score=112.30 Aligned_cols=170 Identities=16% Similarity=0.150 Sum_probs=108.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNL 228 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~ 228 (517)
.++++|.|+||||||++++.++..++ ..++.|+|....++.++...-.-.+.. +.....-....
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~----------~~~~rV~~~~~l~~~DliG~~~~~l~~------g~~~~~f~~Gp 127 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLN----------WPCVRVNLDSHVSRIDLVGKDAIVLKD------GKQITEFRDGI 127 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHC----------CCeEEEEecCCCChhhcCCCceeeccC------CcceeEEecCc
Confidence 56899999999999999999999885 368999999988877653221100100 00000000000
Q ss_pred HHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccC------C-----CCCCcEEEEEEECCCC-------c--chhh
Q 010136 229 YSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLT------T-----FPFSRFILIGIANAID-------L--ADRF 288 (517)
Q Consensus 229 ~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~------~-----~~~~~v~lI~ian~~~-------~--~~~l 288 (517)
+. .....+.+|++||+|......+..|..+++.. . .+...+.||+++|+.+ + ...+
T Consensus 128 L~----~A~~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l 203 (327)
T TIGR01650 128 LP----WALQHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQI 203 (327)
T ss_pred ch----hHHhCCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecC
Confidence 10 01134578999999999877788888888731 1 1334789999999865 1 2235
Q ss_pred cccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHH
Q 010136 289 LPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVA 341 (517)
Q Consensus 289 ~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~ 341 (517)
......| |. ..+.+.-++.++-.+||..+..+.. ..-+++.++++.+.+.
T Consensus 204 ~~A~lDR-F~-i~~~~~Yp~~e~E~~Il~~~~~~~~-~~~~~~i~~~mV~la~ 253 (327)
T TIGR01650 204 NQAQMDR-WS-IVTTLNYLEHDNEAAIVLAKAKGFD-DTEGKDIINAMVRVAD 253 (327)
T ss_pred CHHHHhh-ee-eEeeCCCCCHHHHHHHHHhhccCCC-ccchHHHHHHHHHHHH
Confidence 6777788 52 2567888899999999987654322 1223456666665443
No 175
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.23 E-value=1.3e-10 Score=118.01 Aligned_cols=216 Identities=16% Similarity=0.190 Sum_probs=121.7
Q ss_pred hhcCcCCCCC---CCCCcHHHHHHHHHHHHHhh--c-cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEE
Q 010136 115 EALHVSTAPS---TIVCREDEQKKVLEFCKKNL--E-EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVF 188 (517)
Q Consensus 115 ~~l~~~~~p~---~l~gRe~e~~~l~~~L~~~l--~-~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v 188 (517)
+.|-+.|.|. +|.-+.+.+.++..||..+. . .-+...+||+||+||||||+++.++++++-... -
T Consensus 70 elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~---------E 140 (634)
T KOG1970|consen 70 ELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLI---------E 140 (634)
T ss_pred chhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCceee---------e
Confidence 3455566664 67888888999999998322 2 223557999999999999999999999863222 2
Q ss_pred EEeCCCCCCHHHH------HH-HHHHHhCCCCCCCCCCCHHHHHHHHHHh---------hhccCCCceEEEEEeCcchhc
Q 010136 189 SINCTSLTNTSEI------FS-KILLKLQPRKKLNGSTSPLQYLQNLYSQ---------KLHSSVMKMMLIIADELDYLI 252 (517)
Q Consensus 189 ~vn~~~~~s~~~i------~~-~i~~~l~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~~~vI~iDEiD~L~ 252 (517)
+.|...+..+..+ .. ....+ ...++.++.. ........+.+|+|||+....
T Consensus 141 w~Npi~~~~~~~~h~~t~~~~~~~~s~-------------L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~ 207 (634)
T KOG1970|consen 141 WSNPINLKEPENLHNETSFLMFPYQSQ-------------LAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQF 207 (634)
T ss_pred ecCCccccccccccccchhcccchhhH-------------HHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhh
Confidence 3333332221110 00 00000 1111111111 011123456799999999887
Q ss_pred cc-CchHHHHHhccC-CCCCCcEEEEEEECCCC----cchhhc-ccccccCCCceEEEeCCCCHHHHHHHHHHHHhhh--
Q 010136 253 TR-DRAVLHDLFMLT-TFPFSRFILIGIANAID----LADRFL-PRLQSMNCKPLVVTFRAYSKDQIIRILQERLMEL-- 323 (517)
Q Consensus 253 ~~-~~~~L~~l~~~~-~~~~~~v~lI~ian~~~----~~~~l~-~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~-- 323 (517)
.. +.+.+..+++.. .....+ +|+++|+... -.+++. ..++-. .+...|.|.|....-+.+.|.......
T Consensus 208 ~~d~~~~f~evL~~y~s~g~~P-lIf~iTd~~~~g~nnq~rlf~~d~q~~-~ri~~IsFNPIa~T~MKK~L~ric~~e~~ 285 (634)
T KOG1970|consen 208 YRDDSETFREVLRLYVSIGRCP-LIFIITDSLSNGNNNQDRLFPKDIQEE-PRISNISFNPIAPTIMKKFLKRICRIEAN 285 (634)
T ss_pred hhhhHHHHHHHHHHHHhcCCCc-EEEEEeccccCCCcchhhhchhhhhhc-cCcceEeecCCcHHHHHHHHHHHHHHhcc
Confidence 66 334444444432 222334 3444455431 112221 112222 345799999999999999888655321
Q ss_pred --ccCCCC-hhHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 010136 324 --SYIVFQ-PQALELCARKVAAASGDMRKALSVCRSA 357 (517)
Q Consensus 324 --~~~~~~-~~ai~~ia~~~~~~~Gd~R~al~ll~~A 357 (517)
....+. ...++.++. +++||+|.||+.|+-.
T Consensus 286 ~~s~~k~~~~~~v~~i~~---~s~GDIRsAInsLQls 319 (634)
T KOG1970|consen 286 KKSGIKVPDTAEVELICQ---GSGGDIRSAINSLQLS 319 (634)
T ss_pred cccCCcCchhHHHHHHHH---hcCccHHHHHhHhhhh
Confidence 111122 233444443 6999999999999875
No 176
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=99.23 E-value=4e-10 Score=104.67 Aligned_cols=214 Identities=19% Similarity=0.194 Sum_probs=139.4
Q ss_pred HHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCC
Q 010136 137 LEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLN 216 (517)
Q Consensus 137 ~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~ 216 (517)
...+..++. ...+.+.++|+-|+|||.+.|++...+.+. ...++++..... +...+...++..+.......
T Consensus 40 l~~l~~~i~-d~qg~~~vtGevGsGKTv~~Ral~~s~~~d-------~~~~v~i~~~~~-s~~~~~~ai~~~l~~~p~~~ 110 (269)
T COG3267 40 LLMLHAAIA-DGQGILAVTGEVGSGKTVLRRALLASLNED-------QVAVVVIDKPTL-SDATLLEAIVADLESQPKVN 110 (269)
T ss_pred HHHHHHHHh-cCCceEEEEecCCCchhHHHHHHHHhcCCC-------ceEEEEecCcch-hHHHHHHHHHHHhccCccch
Confidence 333444443 345688999999999999999665554421 134577777665 45667777888886632222
Q ss_pred CCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCCCcchhh----cccc
Q 010136 217 GSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAIDLADRF----LPRL 292 (517)
Q Consensus 217 ~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l----~~~l 292 (517)
. ....+.+.+.+... ......+.++++||++.|.....+.|.-|.+........+.++.+.... +..++ ...+
T Consensus 111 ~-~~~~e~~~~~L~al-~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~-L~~~lr~~~l~e~ 187 (269)
T COG3267 111 V-NAVLEQIDRELAAL-VKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPK-LRPRLRLPVLREL 187 (269)
T ss_pred h-HHHHHHHHHHHHHH-HHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcc-cchhhchHHHHhh
Confidence 1 11122333333221 2245666999999999998877788887777755555554444333311 11111 1222
Q ss_pred cccCCCceEEEeCCCCHHHHHHHHHHHHh--hhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHh
Q 010136 293 QSMNCKPLVVTFRAYSKDQIIRILQERLM--ELSYIVFQPQALELCARKVAAASGDMRKALSVCRSAIEILEAEMRE 367 (517)
Q Consensus 293 ~sr~~~~~~i~f~p~~~~e~~~IL~~rl~--~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~~a~~~~~~ 367 (517)
.-| +.. +|..+|++.++...+|+.+++ +.+...|+++++..++. +..|-+|..-++|..|...|...+..
T Consensus 188 ~~R-~~i-r~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~---~sqg~P~lin~~~~~Al~~a~~a~~~ 259 (269)
T COG3267 188 EQR-IDI-RIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHE---ASQGIPRLINNLATLALDAAYSAGED 259 (269)
T ss_pred hhe-EEE-EEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHH---HhccchHHHHHHHHHHHHHHHHcCCC
Confidence 333 433 388999999999999999998 45668999999999987 57777777778889999888776654
No 177
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.21 E-value=3.7e-10 Score=112.60 Aligned_cols=250 Identities=15% Similarity=0.165 Sum_probs=152.0
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHH
Q 010136 121 TAPSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSE 200 (517)
Q Consensus 121 ~~p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~ 200 (517)
|-...++|.++....| ...+.....++++|.|++|||||++++.+.+.+.....-.+- .| +|... .+..
T Consensus 14 ~pf~~ivGq~~~k~al----~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~---pf---~~~p~-~p~~ 82 (350)
T CHL00081 14 FPFTAIVGQEEMKLAL----ILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDD---PF---NSHPS-DPEL 82 (350)
T ss_pred CCHHHHhChHHHHHHH----HHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCC---CC---CCCCC-Chhh
Confidence 3345789998754444 333444567889999999999999999998887642110000 11 22221 1222
Q ss_pred HHHHHHHHhCCCC------------CCCCCCCHHHH------HHHHHHhhhc------cCCCceEEEEEeCcchhcccCc
Q 010136 201 IFSKILLKLQPRK------------KLNGSTSPLQY------LQNLYSQKLH------SSVMKMMLIIADELDYLITRDR 256 (517)
Q Consensus 201 i~~~i~~~l~~~~------------~~~~~~~~~~~------l~~~~~~~~~------~~~~~~~vI~iDEiD~L~~~~~ 256 (517)
....+.....+.. ..+.+.. .+. +...|..... -.....-+|+|||++.+....|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~t-ed~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q 161 (350)
T CHL00081 83 MSDEVREAIQNGETIETEKIKIPMVDLPLGAT-EDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLV 161 (350)
T ss_pred hchhhhhhhcccccccceeccccceecCCCCc-hhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHH
Confidence 2112222111100 0001111 111 2222221100 0122235899999999998888
Q ss_pred hHHHHHhccCC----------CCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCC-HHHHHHHHHHHHh----
Q 010136 257 AVLHDLFMLTT----------FPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYS-KDQIIRILQERLM---- 321 (517)
Q Consensus 257 ~~L~~l~~~~~----------~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~-~~e~~~IL~~rl~---- 321 (517)
..|...++... ....++++|++.|..+ ..+.+.+..| |.. .+.+..++ .++..+|+..+..
T Consensus 162 ~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~e--g~l~~~LldR-f~l-~i~l~~~~~~~~e~~il~~~~~~~~~ 237 (350)
T CHL00081 162 DILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEE--GELRPQLLDR-FGM-HAEIRTVKDPELRVKIVEQRTSFDKN 237 (350)
T ss_pred HHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCccc--CCCCHHHHHH-hCc-eeecCCCCChHHHHHHHHhhhccccC
Confidence 88877765411 1235788888777532 2466777777 544 66666665 5777777775432
Q ss_pred ------------------------hhccCCCChhHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 010136 322 ------------------------ELSYIVFQPQALELCARKVAAASG-DMRKALSVCRSAIEILEAEMRESVSKMNSAS 376 (517)
Q Consensus 322 ------------------------~~~~~~~~~~ai~~ia~~~~~~~G-d~R~al~ll~~A~~~a~~~~~~~~~~~~~~~ 376 (517)
.+....++++.++++++.+....- ..|-.+.+++.|-.+|..+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~--------- 308 (350)
T CHL00081 238 PQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFEGRT--------- 308 (350)
T ss_pred hhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHcCCC---------
Confidence 012356788889999987765543 5899999999999999999988
Q ss_pred ccccchhhhhhhhhhccCccccHHHHHHHHHHhccChh
Q 010136 377 AEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSPV 414 (517)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~~ 414 (517)
.|+.+||..+..-+...+.
T Consensus 309 -------------------~V~pdDv~~~a~~vL~HR~ 327 (350)
T CHL00081 309 -------------------EVTPKDIFKVITLCLRHRL 327 (350)
T ss_pred -------------------CCCHHHHHHHHHHHHHHhC
Confidence 8999999999987776553
No 178
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.21 E-value=3.9e-10 Score=111.55 Aligned_cols=186 Identities=16% Similarity=0.184 Sum_probs=115.6
Q ss_pred HHHHHHHhhccCCCC-eEEEEcCCCCcHHHHHHHHHHHHHHHHHhc-----------CCCCceEEEEeC-CCCCCHHHHH
Q 010136 136 VLEFCKKNLEEEKAG-SLYVCGCPGTGKSLSMEKVQHYLVDWAKEA-----------GLQQPEVFSINC-TSLTNTSEIF 202 (517)
Q Consensus 136 l~~~L~~~l~~~~~~-~lli~G~pGtGKT~l~~~v~~~l~~~~~~~-----------~~~~~~~v~vn~-~~~~s~~~i~ 202 (517)
....|...+..++.+ .++|+||+|+||++++..+++.+.+..... ....+.+.++.. ......
T Consensus 12 ~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~---- 87 (319)
T PRK08769 12 AYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGD---- 87 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccc----
Confidence 344445555555544 588999999999999999999886521000 000112222211 000000
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECC
Q 010136 203 SKILLKLQPRKKLNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANA 281 (517)
Q Consensus 203 ~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~ 281 (517)
+. ...-..+.++++.... .....++..|+|||++|.|.....+.|...++.+ ..++.+|.+++.
T Consensus 88 -----------k~-~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP---p~~~~fiL~~~~ 152 (319)
T PRK08769 88 -----------KL-RTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEP---SPGRYLWLISAQ 152 (319)
T ss_pred -----------cc-cccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCC---CCCCeEEEEECC
Confidence 00 0011244555554421 1222346689999999999887788888888774 346666666773
Q ss_pred CCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHH
Q 010136 282 IDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRS 356 (517)
Q Consensus 282 ~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~ 356 (517)
++++.|.++|| | +.+.|.+++.+++.+.|... .+++.....++. .+.|.+..|+.++..
T Consensus 153 ---~~~lLpTIrSR-C--q~i~~~~~~~~~~~~~L~~~-------~~~~~~a~~~~~---l~~G~p~~A~~~~~~ 211 (319)
T PRK08769 153 ---PARLPATIRSR-C--QRLEFKLPPAHEALAWLLAQ-------GVSERAAQEALD---AARGHPGLAAQWLRE 211 (319)
T ss_pred ---hhhCchHHHhh-h--eEeeCCCcCHHHHHHHHHHc-------CCChHHHHHHHH---HcCCCHHHHHHHhcC
Confidence 77889999999 8 79999999999999888742 233333333333 477888888887743
No 179
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.21 E-value=4.7e-10 Score=110.86 Aligned_cols=204 Identities=18% Similarity=0.185 Sum_probs=117.3
Q ss_pred cHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHH
Q 010136 129 REDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLK 208 (517)
Q Consensus 129 Re~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~ 208 (517)
||+++++|.+.|...- .....+.|+|++|+|||++|..+++... ....+. .++++++....+...++..|+.+
T Consensus 1 re~~~~~l~~~L~~~~--~~~~~v~I~G~~G~GKT~LA~~~~~~~~---~~~~f~--~v~wv~~~~~~~~~~~~~~i~~~ 73 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS--NEVRVVAIVGMGGIGKTTLARQVARDLR---IKNRFD--GVIWVSLSKNPSLEQLLEQILRQ 73 (287)
T ss_dssp -HHHHHHHHHHHHTTT--TSSEEEEEEESTTSSHHHHHHHHHCHHH---HCCCCT--EEEEEEEES-SCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhCCC--CCeEEEEEEcCCcCCcceeeeecccccc---cccccc--ccccccccccccccccccccccc
Confidence 7899999999988743 5677899999999999999999987743 112222 46788888777778999999999
Q ss_pred hCCCCCCC-CCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCCCcchh
Q 010136 209 LQPRKKLN-GSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAIDLADR 287 (517)
Q Consensus 209 l~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~ 287 (517)
+....... .... ...+...+.+.. ..++++||||+++... .+..+.........+..+|.+|....
T Consensus 74 l~~~~~~~~~~~~-~~~~~~~l~~~L---~~~~~LlVlDdv~~~~-----~~~~l~~~~~~~~~~~kilvTTR~~~---- 140 (287)
T PF00931_consen 74 LGEPDSSISDPKD-IEELQDQLRELL---KDKRCLLVLDDVWDEE-----DLEELREPLPSFSSGSKILVTTRDRS---- 140 (287)
T ss_dssp HTCC-STSSCCSS-HHHHHHHHHHHH---CCTSEEEEEEEE-SHH-----HH-------HCHHSS-EEEEEESCGG----
T ss_pred ccccccccccccc-cccccccchhhh---ccccceeeeeeecccc-----cccccccccccccccccccccccccc----
Confidence 98764322 2222 222333333221 2337999999998764 23222221111112344555566422
Q ss_pred hcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 010136 288 FLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRSA 357 (517)
Q Consensus 288 l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A 357 (517)
+...... ....+.+.+++.++..+++...+.... ..+...++..++.+....|....|+.++-..
T Consensus 141 v~~~~~~---~~~~~~l~~L~~~ea~~L~~~~~~~~~--~~~~~~~~~~~~~i~~~c~glPLal~~~a~~ 205 (287)
T PF00931_consen 141 VAGSLGG---TDKVIELEPLSEEEALELFKKRAGRKE--SESPEDLEDLAKEIVEKCGGLPLALKLIASY 205 (287)
T ss_dssp GGTTHHS---CEEEEECSS--HHHHHHHHHHHHTSHS------TTSCTHHHHHHHHTTT-HHHHHHHHHH
T ss_pred ccccccc---ccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccc
Confidence 2122111 136899999999999999998875322 1111112223333334677788888777443
No 180
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.20 E-value=7e-10 Score=104.18 Aligned_cols=135 Identities=19% Similarity=0.216 Sum_probs=97.1
Q ss_pred CceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCC--------C--cchhhcccccccCCCceEEEeCCC
Q 010136 238 MKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAI--------D--LADRFLPRLQSMNCKPLVVTFRAY 307 (517)
Q Consensus 238 ~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~--------~--~~~~l~~~l~sr~~~~~~i~f~p~ 307 (517)
--|-||||||++.|.-..-..|+..++.+ -+++ +|+++|.- + -+.-+.+.+..| + ..|.-.+|
T Consensus 295 lvPGVLFIDEVhMLDiEcFTyL~kalES~---iaPi-vifAsNrG~~~irGt~d~~sPhGip~dllDR-l--~Iirt~~y 367 (456)
T KOG1942|consen 295 LVPGVLFIDEVHMLDIECFTYLHKALESP---IAPI-VIFASNRGMCTIRGTEDILSPHGIPPDLLDR-L--LIIRTLPY 367 (456)
T ss_pred hcCcceEeeehhhhhhHHHHHHHHHhcCC---CCce-EEEecCCcceeecCCcCCCCCCCCCHHHhhh-e--eEEeeccC
Confidence 34779999999999655555566666543 2333 45556642 1 222344566666 4 47888999
Q ss_pred CHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhh
Q 010136 308 SKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAA 387 (517)
Q Consensus 308 ~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (517)
+.+++.+|++.|.+. +.-.++++++.++++. ..+..+|.++.++--|.-+|...++.
T Consensus 368 ~~~e~r~Ii~~Ra~~-E~l~~~e~a~~~l~~~--gt~tsLRy~vqLl~p~~~~ak~~g~~-------------------- 424 (456)
T KOG1942|consen 368 DEEEIRQIIKIRAQV-EGLQVEEEALDLLAEI--GTSTSLRYAVQLLTPASILAKTNGRK-------------------- 424 (456)
T ss_pred CHHHHHHHHHHHHhh-hcceecHHHHHHHHhh--ccchhHHHHHHhcCHHHHHHHHcCCc--------------------
Confidence 999999999998862 1237899999999874 45668999999999988888888876
Q ss_pred hhhhccCccccHHHHHHHHHHhc
Q 010136 388 SAFEFFNSQVRVDHMAVALSNTF 410 (517)
Q Consensus 388 ~~~~~~~~~Vt~~~v~~a~~~~~ 410 (517)
.|..+||.++..-..
T Consensus 425 --------~i~v~dvee~~~Lf~ 439 (456)
T KOG1942|consen 425 --------EISVEDVEEVTELFL 439 (456)
T ss_pred --------eeecccHHHHHHHHH
Confidence 688888887765443
No 181
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.20 E-value=8.3e-11 Score=117.79 Aligned_cols=211 Identities=18% Similarity=0.159 Sum_probs=136.1
Q ss_pred CCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHH
Q 010136 126 IVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKI 205 (517)
Q Consensus 126 l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i 205 (517)
++|+...++.+.+.+..... ...+++|+|++||||+++|+++-..... ..-.|+.|||..... ..+-
T Consensus 1 liG~S~~m~~~~~~~~~~a~--~~~pVLI~GE~GtGK~~lAr~iH~~s~r-------~~~pfv~vnc~~~~~-~~l~--- 67 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP--LDRPVLIIGERGTGKELIAARLHYLSKR-------WQGPLVKLNCAALSE-NLLD--- 67 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC--CCCCEEEECCCCChHHHHHHHHHHhcCc-------cCCCeEEEeCCCCCh-HHHH---
Confidence 46778888888888888754 5678999999999999999998654321 113699999998642 2221
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCC--------CCCCcEEEEE
Q 010136 206 LLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTT--------FPFSRFILIG 277 (517)
Q Consensus 206 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~--------~~~~~v~lI~ 277 (517)
..+.+......... ...-..+|. ....-+||||||+.|....|..|..+++... .....+-+|+
T Consensus 68 -~~lfG~~~g~~~ga-~~~~~G~~~------~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~ 139 (329)
T TIGR02974 68 -SELFGHEAGAFTGA-QKRHQGRFE------RADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVC 139 (329)
T ss_pred -HHHhccccccccCc-ccccCCchh------hCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEE
Confidence 22222221110000 000011122 1224579999999998888887777775422 1124677888
Q ss_pred EECCCCcc-----hhhcccccccCCCceEEEeCCCC--HHHHHHHHHHHHhhh------cc-CCCChhHHHHHHHHHHHH
Q 010136 278 IANAIDLA-----DRFLPRLQSMNCKPLVVTFRAYS--KDQIIRILQERLMEL------SY-IVFQPQALELCARKVAAA 343 (517)
Q Consensus 278 ian~~~~~-----~~l~~~l~sr~~~~~~i~f~p~~--~~e~~~IL~~rl~~~------~~-~~~~~~ai~~ia~~~~~~ 343 (517)
+++. ++. ..+.+.+..| +....|.+||+. .+++..++...+..+ .. ..+++++++.+..+ ..
T Consensus 140 at~~-~l~~~~~~g~fr~dL~~r-l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y--~W 215 (329)
T TIGR02974 140 ATNA-DLPALAAEGRFRADLLDR-LAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEY--HW 215 (329)
T ss_pred echh-hHHHHhhcCchHHHHHHH-hcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhC--CC
Confidence 7763 221 1234555555 555689999997 577777776655421 22 36899999999874 46
Q ss_pred hCCHHHHHHHHHHHHHHH
Q 010136 344 SGDMRKALSVCRSAIEIL 361 (517)
Q Consensus 344 ~Gd~R~al~ll~~A~~~a 361 (517)
.|++|..-+++++|+..+
T Consensus 216 PGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 216 PGNVRELKNVVERSVYRH 233 (329)
T ss_pred CchHHHHHHHHHHHHHhC
Confidence 899999999998888654
No 182
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.18 E-value=9.8e-10 Score=109.97 Aligned_cols=180 Identities=13% Similarity=0.160 Sum_probs=116.6
Q ss_pred HHHHHhhccCC-CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCC--------------CCceEEEEeCCCCCCHHHHH
Q 010136 138 EFCKKNLEEEK-AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGL--------------QQPEVFSINCTSLTNTSEIF 202 (517)
Q Consensus 138 ~~L~~~l~~~~-~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~--------------~~~~~v~vn~~~~~s~~~i~ 202 (517)
+.|...+..++ +..++|+||+|+||++++..+++.+.+.....+. .++.+.++.....
T Consensus 12 ~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~------- 84 (334)
T PRK07993 12 EQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG------- 84 (334)
T ss_pred HHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-------
Confidence 33444444444 4457799999999999999999998653211100 0112222211000
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECC
Q 010136 203 SKILLKLQPRKKLNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANA 281 (517)
Q Consensus 203 ~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~ 281 (517)
.... ..+.++++.... .....+...|+|||++|.|.....+.|..+++.+ ..+.++|.+++
T Consensus 85 -------------~~~I-~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP---p~~t~fiL~t~- 146 (334)
T PRK07993 85 -------------KSSL-GVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEP---PENTWFFLACR- 146 (334)
T ss_pred -------------cccC-CHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCC---CCCeEEEEEEC-
Confidence 0001 134444443321 2233466789999999999888888888888774 45677777777
Q ss_pred CCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHH
Q 010136 282 IDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRS 356 (517)
Q Consensus 282 ~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~ 356 (517)
-++++.|.++|| | +.+.|++++.+++.+.|..+. .++++....+++ .+.|++..|+.++..
T Consensus 147 --~~~~lLpTIrSR-C--q~~~~~~~~~~~~~~~L~~~~------~~~~~~a~~~~~---la~G~~~~Al~l~~~ 207 (334)
T PRK07993 147 --EPARLLATLRSR-C--RLHYLAPPPEQYALTWLSREV------TMSQDALLAALR---LSAGAPGAALALLQP 207 (334)
T ss_pred --ChhhChHHHHhc-c--ccccCCCCCHHHHHHHHHHcc------CCCHHHHHHHHH---HcCCCHHHHHHHhcC
Confidence 378899999999 7 689999999999998887532 244554444444 478899999988743
No 183
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.18 E-value=3.9e-10 Score=122.65 Aligned_cols=142 Identities=18% Similarity=0.212 Sum_probs=101.0
Q ss_pred EEEEEeCcchhcccCchHHHHHhccCC----------CCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCC-CH
Q 010136 241 MLIIADELDYLITRDRAVLHDLFMLTT----------FPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAY-SK 309 (517)
Q Consensus 241 ~vI~iDEiD~L~~~~~~~L~~l~~~~~----------~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~-~~ 309 (517)
-|||||||+.|....|+.|..+++... ....++.||+++|..+ ..+.+.+.+| |.. .|.+.+. +.
T Consensus 128 GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~e--g~l~~~L~dR-~~l-~i~v~~~~~~ 203 (633)
T TIGR02442 128 GILYIDEVNLLDDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEE--GDLRPQLLDR-FGL-CVDVAAPRDP 203 (633)
T ss_pred CeEEeChhhhCCHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCC--CCCCHHHHhh-cce-EEEccCCCch
Confidence 499999999999888888888876421 1125789999888532 2356677787 644 4445443 45
Q ss_pred HHHHHHHHHHHh----------------------------hhccCCCChhHHHHHHHHHHHHhC-CHHHHHHHHHHHHHH
Q 010136 310 DQIIRILQERLM----------------------------ELSYIVFQPQALELCARKVAAASG-DMRKALSVCRSAIEI 360 (517)
Q Consensus 310 ~e~~~IL~~rl~----------------------------~~~~~~~~~~ai~~ia~~~~~~~G-d~R~al~ll~~A~~~ 360 (517)
++..+++..++. .+....++++++++++..+....- ..|..+.+++.|..+
T Consensus 204 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~ 283 (633)
T TIGR02442 204 EERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARAL 283 (633)
T ss_pred HHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Confidence 665666654321 011246788889999887765544 489999999999999
Q ss_pred HHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccChh
Q 010136 361 LEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSPV 414 (517)
Q Consensus 361 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~~ 414 (517)
|..+++. .|+.+||..|+.-+.....
T Consensus 284 AaL~gr~----------------------------~V~~~Dv~~A~~lvL~hR~ 309 (633)
T TIGR02442 284 AALDGRR----------------------------RVTAEDVREAAELVLPHRR 309 (633)
T ss_pred HHHcCCC----------------------------cCCHHHHHHHHHHHhhhhc
Confidence 9988887 8999999999988775543
No 184
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.17 E-value=9e-10 Score=110.94 Aligned_cols=163 Identities=18% Similarity=0.209 Sum_probs=104.9
Q ss_pred CCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHH
Q 010136 126 IVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKI 205 (517)
Q Consensus 126 l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i 205 (517)
++|+++.+..+...+. .+++++|.|+||||||++++.+++.++ ..++.|+|.....+.+++...
T Consensus 26 ~~g~~~~~~~~l~a~~------~~~~vll~G~PG~gKT~la~~lA~~l~----------~~~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 26 VVGDEEVIELALLALL------AGGHVLLEGPPGVGKTLLARALARALG----------LPFVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eeccHHHHHHHHHHHH------cCCCEEEECCCCccHHHHHHHHHHHhC----------CCeEEEecCCCCCHHHhcCch
Confidence 6777777665555433 368999999999999999999999876 369999999998888864332
Q ss_pred HHH-h---CCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccC---------CCCCCc
Q 010136 206 LLK-L---QPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLT---------TFPFSR 272 (517)
Q Consensus 206 ~~~-l---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~---------~~~~~~ 272 (517)
.-. . ........+. +|. ... .|+++|||+......|.+|+.+++.. ......
T Consensus 90 ~~~~~~~~~~~~~~~~gp--------l~~------~~~-~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~ 154 (329)
T COG0714 90 AYAALLLEPGEFRFVPGP--------LFA------AVR-VILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPP 154 (329)
T ss_pred hHhhhhccCCeEEEecCC--------ccc------ccc-eEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCC
Confidence 211 1 0000000000 011 111 59999999999988899999988761 112356
Q ss_pred EEEEEEECCCCcch--hhcccccccCCCceEEEeCCCCHHHHHHHHHHHHh
Q 010136 273 FILIGIANAIDLAD--RFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLM 321 (517)
Q Consensus 273 v~lI~ian~~~~~~--~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~ 321 (517)
+.+|+++|..+... .+...+.+| |. -.+.+..+..++...++..+..
T Consensus 155 f~viaT~Np~e~~g~~~l~eA~ldR-f~-~~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 155 FIVIATQNPGEYEGTYPLPEALLDR-FL-LRIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred CEEEEccCccccCCCcCCCHHHHhh-EE-EEEecCCCCchHHHHHHHHhCc
Confidence 88888889654322 245677777 52 2556665545555555544443
No 185
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.16 E-value=4.8e-10 Score=120.63 Aligned_cols=215 Identities=13% Similarity=0.084 Sum_probs=139.3
Q ss_pred cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHH--HHHhCCCCCCCCCCCHHH
Q 010136 146 EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKI--LLKLQPRKKLNGSTSPLQ 223 (517)
Q Consensus 146 ~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i--~~~l~~~~~~~~~~~~~~ 223 (517)
+...++++|.|+||||||++++.+...+... ..|+.+++. .+...++..+ ...+.....
T Consensus 13 ~p~~g~vLl~G~~GtgKs~lar~l~~~~~~~--------~pfv~i~~~--~t~d~L~G~idl~~~~~~g~~--------- 73 (589)
T TIGR02031 13 DPSLGGVAIRARAGTGKTALARALAEILPPI--------MPFVELPLG--VTEDRLIGGIDVEESLAGGQR--------- 73 (589)
T ss_pred CCCcceEEEEcCCCcHHHHHHHHHHHhCCcC--------CCeEecCcc--cchhhcccchhhhhhhhcCcc---------
Confidence 3457899999999999999999998765421 136666642 1223322221 111110000
Q ss_pred HHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCC----------CCCCcEEEEEEECCCCcchhhccccc
Q 010136 224 YLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTT----------FPFSRFILIGIANAIDLADRFLPRLQ 293 (517)
Q Consensus 224 ~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~----------~~~~~v~lI~ian~~~~~~~l~~~l~ 293 (517)
.|..... .....-+||||||+.+....|..|..+++... .....+.||+++|..+....+.+.+.
T Consensus 74 ----~~~~G~L-~~A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Ll 148 (589)
T TIGR02031 74 ----VTQPGLL-DEAPRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLL 148 (589)
T ss_pred ----cCCCCCe-eeCCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHH
Confidence 0100001 01223589999999999888888888876432 01257889998886542245677788
Q ss_pred ccCCCceEEEeCCCCHHHHHHHHHHHHh----------------------hhccCCCChhHHHHHHHHHHHHhCC-HHHH
Q 010136 294 SMNCKPLVVTFRAYSKDQIIRILQERLM----------------------ELSYIVFQPQALELCARKVAAASGD-MRKA 350 (517)
Q Consensus 294 sr~~~~~~i~f~p~~~~e~~~IL~~rl~----------------------~~~~~~~~~~ai~~ia~~~~~~~Gd-~R~a 350 (517)
.| |........+.+.++..+|+...+. .+....++++++++++..+.....+ .|..
T Consensus 149 dR-f~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~ 227 (589)
T TIGR02031 149 DR-LALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRAD 227 (589)
T ss_pred Hh-ccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHH
Confidence 88 6553334444466666777765431 1123567889999998877655544 8999
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccCh
Q 010136 351 LSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSP 413 (517)
Q Consensus 351 l~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~ 413 (517)
+.+++.|...|..+++. .|+.+||..|+.-+....
T Consensus 228 i~~~r~ArA~Aal~gr~----------------------------~V~~~Dv~~a~~lvl~hR 262 (589)
T TIGR02031 228 LFAVRAAKAHAALHGRT----------------------------EVTEEDLKLAVELVLLPR 262 (589)
T ss_pred HHHHHHHHHHHHHhCCC----------------------------CCCHHHHHHHHHHHhhhh
Confidence 99999999999998887 899999999998776544
No 186
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=99.16 E-value=8.4e-11 Score=108.09 Aligned_cols=134 Identities=19% Similarity=0.275 Sum_probs=70.1
Q ss_pred CCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCC-H----HH
Q 010136 126 IVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTN-T----SE 200 (517)
Q Consensus 126 l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s-~----~~ 200 (517)
++||+++++++...+. ......+.+++|+|++|+|||++++.+...+.... ..+++++|..... + ..
T Consensus 2 fvgR~~e~~~l~~~l~-~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 73 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERG-------GYVISINCDDSERNPYSPFRS 73 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT---------EEEEEEETTTS-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcC-------CEEEEEEEeccccchhhHHHH
Confidence 7999999999999998 66777789999999999999999999998887641 1267777766521 3 33
Q ss_pred HHHHHHHHhCCCCCC--------------------------------CCCCCHHHHHH----HHHHhh--hccCCCceEE
Q 010136 201 IFSKILLKLQPRKKL--------------------------------NGSTSPLQYLQ----NLYSQK--LHSSVMKMML 242 (517)
Q Consensus 201 i~~~i~~~l~~~~~~--------------------------------~~~~~~~~~l~----~~~~~~--~~~~~~~~~v 242 (517)
++..+..++...... .........+. ..+... ......++.+
T Consensus 74 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~v 153 (185)
T PF13191_consen 74 ALRQLIDQLLDQSQATTRSPLREKLAASLDDDAADLLVLLPDLDRLEAASALDPDSLEDRLEELLREILRELAARRKPLV 153 (185)
T ss_dssp HHHHHS------------------------------------------SS---HHHHH----HHHHHHHTTS-SE---EE
T ss_pred HHHHHHHHhhccccccccccccccccccccccccccccccccccccccccCCCHHHHHhHHHHHHHHHHHHHHhCCCeEE
Confidence 344443333221100 00000011111 222221 1222344699
Q ss_pred EEEeCcchhcccCchHHHHHhccCC
Q 010136 243 IIADELDYLITRDRAVLHDLFMLTT 267 (517)
Q Consensus 243 I~iDEiD~L~~~~~~~L~~l~~~~~ 267 (517)
|+||++|.+....+..|..+++...
T Consensus 154 lviDd~d~~~~~~~~~l~~l~~~~~ 178 (185)
T PF13191_consen 154 LVIDDLDWADPASLDLLRALARRLQ 178 (185)
T ss_dssp EEEETTTHHHTTHHHHHHH------
T ss_pred EEEeCCCCCCcHHHHHHHhcccccc
Confidence 9999999998777788888877643
No 187
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.14 E-value=6.8e-10 Score=99.69 Aligned_cols=143 Identities=22% Similarity=0.278 Sum_probs=87.5
Q ss_pred HHHHHHHhhccCCCC-eEEEEcCCCCcHHHHHHHHHHHHHHHHHhcC-------------CCCceEEEEeCCCCCCHHHH
Q 010136 136 VLEFCKKNLEEEKAG-SLYVCGCPGTGKSLSMEKVQHYLVDWAKEAG-------------LQQPEVFSINCTSLTNTSEI 201 (517)
Q Consensus 136 l~~~L~~~l~~~~~~-~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~-------------~~~~~~v~vn~~~~~s~~~i 201 (517)
+.+.|...+..+..+ .++|+||+|+||++++..+++.+........ .....+.+++......
T Consensus 5 ~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~---- 80 (162)
T PF13177_consen 5 IIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK---- 80 (162)
T ss_dssp HHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS----
T ss_pred HHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc----
Confidence 444455555555544 5799999999999999999999875432210 1112444444333200
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEEC
Q 010136 202 FSKILLKLQPRKKLNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIAN 280 (517)
Q Consensus 202 ~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian 280 (517)
....+.++++.... .........|++|||+|.|....+++|...++.+ ..++.+|.+++
T Consensus 81 -----------------~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEep---p~~~~fiL~t~ 140 (162)
T PF13177_consen 81 -----------------SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEP---PENTYFILITN 140 (162)
T ss_dssp -----------------SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHST---TTTEEEEEEES
T ss_pred -----------------hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCC---CCCEEEEEEEC
Confidence 01134444444321 1222346789999999999988899999888875 45777777788
Q ss_pred CCCcchhhcccccccCCCceEEEeCCCC
Q 010136 281 AIDLADRFLPRLQSMNCKPLVVTFRAYS 308 (517)
Q Consensus 281 ~~~~~~~l~~~l~sr~~~~~~i~f~p~~ 308 (517)
-++.+.+.++|| | ..+.|+|++
T Consensus 141 ---~~~~il~TI~SR-c--~~i~~~~ls 162 (162)
T PF13177_consen 141 ---NPSKILPTIRSR-C--QVIRFRPLS 162 (162)
T ss_dssp ----GGGS-HHHHTT-S--EEEEE----
T ss_pred ---ChHHChHHHHhh-c--eEEecCCCC
Confidence 478899999999 7 789998864
No 188
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.13 E-value=3.8e-09 Score=113.93 Aligned_cols=139 Identities=17% Similarity=0.150 Sum_probs=93.0
Q ss_pred EEEEEeCcchhcccCchHHHHHhccCC------------------CCCCcEEEEEEECCCCcchhhcccccccCCCc--e
Q 010136 241 MLIIADELDYLITRDRAVLHDLFMLTT------------------FPFSRFILIGIANAIDLADRFLPRLQSMNCKP--L 300 (517)
Q Consensus 241 ~vI~iDEiD~L~~~~~~~L~~l~~~~~------------------~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~--~ 300 (517)
-+|+|||++.|....|..|..+++... .....+.+|+++|.. ....+++.+.+| |.. -
T Consensus 219 GtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~-~l~~l~~~l~~r-f~~y~v 296 (608)
T TIGR00764 219 GVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLD-DLEGMHPALRSR-IRGYGY 296 (608)
T ss_pred CEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHH-HHhhcCHHHHHH-hcCCeE
Confidence 589999999998777777777664311 112467888888743 234578888888 641 2
Q ss_pred EEEeCC---CCHHHHHHHHHH---HHhhh-ccCCCChhHHHHHHHHHHHHhC-------CHHHHHHHHHHHHHHHHHHHH
Q 010136 301 VVTFRA---YSKDQIIRILQE---RLMEL-SYIVFQPQALELCARKVAAASG-------DMRKALSVCRSAIEILEAEMR 366 (517)
Q Consensus 301 ~i~f~p---~~~~e~~~IL~~---rl~~~-~~~~~~~~ai~~ia~~~~~~~G-------d~R~al~ll~~A~~~a~~~~~ 366 (517)
.+.|.. .+.+...++++. .++.. ....|++++++.+.+...+..| ..|..-++++.|..+|..++.
T Consensus 297 ~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~ 376 (608)
T TIGR00764 297 EVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGDIAKSSGK 376 (608)
T ss_pred EEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHhcCC
Confidence 456644 355555554443 33221 1247899999888776554333 478889999999888876654
Q ss_pred hhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHh
Q 010136 367 ESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNT 409 (517)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~ 409 (517)
. .|+.+||.+|++..
T Consensus 377 ~----------------------------~I~~ehV~~Ai~~~ 391 (608)
T TIGR00764 377 V----------------------------YVTAEHVLKAKKLA 391 (608)
T ss_pred c----------------------------eecHHHHHHHHHHH
Confidence 4 79999999997754
No 189
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.12 E-value=2e-10 Score=123.36 Aligned_cols=216 Identities=14% Similarity=0.185 Sum_probs=140.2
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHH
Q 010136 121 TAPSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSE 200 (517)
Q Consensus 121 ~~p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~ 200 (517)
+..+.++|....++++.+.+..... ...+++|+|++|||||++|+++...... ..-.|+.|||..+.. ..
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~--~~~pvli~Ge~GtGK~~lA~~ih~~s~r-------~~~pfv~i~c~~~~~-~~ 262 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVAR--SNSTVLLRGESGTGKELIAKAIHYLSPR-------AKRPFVKVNCAALSE-TL 262 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhC--cCCCEEEECCCCccHHHHHHHHHHhCCC-------CCCCeEEeecCCCCH-HH
Confidence 3456899999999999999888753 5678999999999999999998765321 113699999998743 22
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCC--------CCCc
Q 010136 201 IFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF--------PFSR 272 (517)
Q Consensus 201 i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~--------~~~~ 272 (517)
+ ...+.+..+......... -...+. ....-+||||||+.|....|..|..+++.... ....
T Consensus 263 ~----~~~lfg~~~~~~~~~~~~-~~g~~~------~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~ 331 (534)
T TIGR01817 263 L----ESELFGHEKGAFTGAIAQ-RKGRFE------LADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVD 331 (534)
T ss_pred H----HHHHcCCCCCccCCCCcC-CCCccc------ccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeec
Confidence 1 222323222110000000 000111 12235799999999988888888777754221 1135
Q ss_pred EEEEEEECCCCcch-----hhcccccccCCCceEEEeCCCC--HHHHHHHHHHHHhhhc-----cCCCChhHHHHHHHHH
Q 010136 273 FILIGIANAIDLAD-----RFLPRLQSMNCKPLVVTFRAYS--KDQIIRILQERLMELS-----YIVFQPQALELCARKV 340 (517)
Q Consensus 273 v~lI~ian~~~~~~-----~l~~~l~sr~~~~~~i~f~p~~--~~e~~~IL~~rl~~~~-----~~~~~~~ai~~ia~~~ 340 (517)
+-+|++++. ++.+ .+.+.+..| +....|.+||+. .+++..++...+..+. ...|++++++.+..+
T Consensus 332 ~riI~~s~~-~l~~~~~~~~f~~~L~~r-l~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~- 408 (534)
T TIGR01817 332 VRLVAATNR-DLEEAVAKGEFRADLYYR-INVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSC- 408 (534)
T ss_pred EEEEEeCCC-CHHHHHHcCCCCHHHHHH-hcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhC-
Confidence 778876653 2222 223344444 445689999997 5778777776664321 146899999998874
Q ss_pred HHHhCCHHHHHHHHHHHHHHH
Q 010136 341 AAASGDMRKALSVCRSAIEIL 361 (517)
Q Consensus 341 ~~~~Gd~R~al~ll~~A~~~a 361 (517)
...|++|...+++++|+..+
T Consensus 409 -~WPGNvrEL~~v~~~a~~~~ 428 (534)
T TIGR01817 409 -KWPGNVRELENCLERTATLS 428 (534)
T ss_pred -CCCChHHHHHHHHHHHHHhC
Confidence 46899999999999887544
No 190
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.10 E-value=1.1e-08 Score=93.92 Aligned_cols=193 Identities=15% Similarity=0.180 Sum_probs=131.5
Q ss_pred CCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHH
Q 010136 125 TIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSK 204 (517)
Q Consensus 125 ~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~ 204 (517)
.|+|-+.+.+.|.+.-..++.+...++++++|..||||+++++++..++.... ...|+|+-..+.+.-.
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~g-------lrLVEV~k~dl~~Lp~---- 129 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEG-------LRLVEVDKEDLATLPD---- 129 (287)
T ss_pred HHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcC-------CeEEEEcHHHHhhHHH----
Confidence 68999999999999999999999999999999999999999999999887532 3578887655432222
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhccc-CchHHHHHhccC-CCCCCcEEEEEEECCC
Q 010136 205 ILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITR-DRAVLHDLFMLT-TFPFSRFILIGIANAI 282 (517)
Q Consensus 205 i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~-~~~~L~~l~~~~-~~~~~~v~lI~ian~~ 282 (517)
|.+.+. ......|||.|+.-.=... .-..|..+++-. .....+|++.+++|.-
T Consensus 130 --------------------l~~~Lr-----~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 130 --------------------LVELLR-----ARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRR 184 (287)
T ss_pred --------------------HHHHHh-----cCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCc
Confidence 222222 3556789999987432221 225666777653 3345789999999975
Q ss_pred Ccch-hhcc------------------cccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHH
Q 010136 283 DLAD-RFLP------------------RLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAA 343 (517)
Q Consensus 283 ~~~~-~l~~------------------~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~ 343 (517)
.+.. .+.. .+-.| |+. .+.|.|.+.++...|+...++.+.. .++++.++.-|..-+..
T Consensus 185 HLl~e~~~dn~~~~~eih~~eaveEKlSlSDR-FGL-wL~F~~~~Q~~YL~~V~~~a~~~~l-~~~~e~l~~eAl~WAt~ 261 (287)
T COG2607 185 HLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDR-FGL-WLSFYPCDQDEYLKIVDHYAKHFGL-DISDEELHAEALQWATT 261 (287)
T ss_pred ccccHhhhhCCCcccccChhHHHHHhhchhhh-cce-eecccCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHh
Confidence 4322 1111 12234 765 8999999999999999998875532 45566666555433333
Q ss_pred hC--CHHHHHHHHHH
Q 010136 344 SG--DMRKALSVCRS 356 (517)
Q Consensus 344 ~G--d~R~al~ll~~ 356 (517)
.| +-|.|-+..+.
T Consensus 262 rg~RSGR~A~QF~~~ 276 (287)
T COG2607 262 RGGRSGRVAWQFIRD 276 (287)
T ss_pred cCCCccHhHHHHHHH
Confidence 33 45555554433
No 191
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.10 E-value=1.3e-09 Score=115.20 Aligned_cols=220 Identities=13% Similarity=0.127 Sum_probs=138.0
Q ss_pred CcCCCCCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCC
Q 010136 118 HVSTAPSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTN 197 (517)
Q Consensus 118 ~~~~~p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s 197 (517)
...+..+.++|....++.+...+..... ...+++|+|++||||+++|+.+-..-.. ..-.|+.|||..+..
T Consensus 206 ~~~~~f~~iiG~S~~m~~~~~~i~~~A~--~~~pVLI~GE~GTGKe~lA~~IH~~S~r-------~~~pfv~inC~~l~e 276 (526)
T TIGR02329 206 RTRYRLDDLLGASAPMEQVRALVRLYAR--SDATVLILGESGTGKELVAQAIHQLSGR-------RDFPFVAINCGAIAE 276 (526)
T ss_pred ccccchhheeeCCHHHHHHHHHHHHHhC--CCCcEEEECCCCcCHHHHHHHHHHhcCc-------CCCCEEEeccccCCh
Confidence 3345566799999999999999887654 4678999999999999999998654221 113699999998753
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCC--------C
Q 010136 198 TSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF--------P 269 (517)
Q Consensus 198 ~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~--------~ 269 (517)
.. +-..|.+...+.........-.-+|. ....-.||||||+.|....|..|..+++.... .
T Consensus 277 --~l---leseLFG~~~gaftga~~~~~~Gl~e------~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~ 345 (526)
T TIGR02329 277 --SL---LEAELFGYEEGAFTGARRGGRTGLIE------AAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPV 345 (526)
T ss_pred --hH---HHHHhcCCcccccccccccccccchh------hcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCcee
Confidence 21 22334333222111100000011232 12234799999999988888777777754221 1
Q ss_pred CCcEEEEEEECCCCcch-----hhcccccccCCCceEEEeCCCCH--HHHHHHHHHHHhhhc---cCCCChhHHHH----
Q 010136 270 FSRFILIGIANAIDLAD-----RFLPRLQSMNCKPLVVTFRAYSK--DQIIRILQERLMELS---YIVFQPQALEL---- 335 (517)
Q Consensus 270 ~~~v~lI~ian~~~~~~-----~l~~~l~sr~~~~~~i~f~p~~~--~e~~~IL~~rl~~~~---~~~~~~~ai~~---- 335 (517)
...+-+|++++. ++.+ .+...+.-| +....|.+||+.. +++..++...+..+. ...+++++++.
T Consensus 346 ~~dvRiIaat~~-~l~~~v~~g~fr~dL~~r-L~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~ 423 (526)
T TIGR02329 346 PVDVRVVAATHC-ALTTAVQQGRFRRDLFYR-LSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGV 423 (526)
T ss_pred eecceEEeccCC-CHHHHhhhcchhHHHHHh-cCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHH
Confidence 234567776653 2222 122334444 4556899999964 677777776665321 22488888877
Q ss_pred ---HHHHHHHHhCCHHHHHHHHHHHHHHH
Q 010136 336 ---CARKVAAASGDMRKALSVCRSAIEIL 361 (517)
Q Consensus 336 ---ia~~~~~~~Gd~R~al~ll~~A~~~a 361 (517)
+..+ ...|++|..-+++.+++..+
T Consensus 424 ~~~L~~y--~WPGNvrEL~nvier~~i~~ 450 (526)
T TIGR02329 424 ADPLQRY--PWPGNVRELRNLVERLALEL 450 (526)
T ss_pred HHHHHhC--CCCchHHHHHHHHHHHHHhc
Confidence 4432 46799999999998887543
No 192
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.09 E-value=1.7e-09 Score=114.83 Aligned_cols=232 Identities=14% Similarity=0.080 Sum_probs=138.4
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcc--------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCC
Q 010136 124 STIVCREDEQKKVLEFCKKNLEE--------EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSL 195 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~--------~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~ 195 (517)
..++|.+.....+.-.+...... ...-+++|+|+||||||++++.+.+.... ..++.+...
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r-----------~~~~~~~~~ 271 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPR-----------AVYTTGKGS 271 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCc-----------ceEcCCCCC
Confidence 46888888655444443321100 01128999999999999999999876432 123332111
Q ss_pred CCHHHHHHH-HHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCC-------
Q 010136 196 TNTSEIFSK-ILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTT------- 267 (517)
Q Consensus 196 ~s~~~i~~~-i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~------- 267 (517)
+...+... +.....+... +..... .....-+++|||+|.+....|..|...++...
T Consensus 272 -~~~~l~~~~~~~~~~g~~~--------------~~~G~l-~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G 335 (509)
T smart00350 272 -SAVGLTAAVTRDPETREFT--------------LEGGAL-VLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAG 335 (509)
T ss_pred -CcCCccccceEccCcceEE--------------ecCccE-EecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCC
Confidence 00000000 0000000000 000000 01123489999999998888888888875422
Q ss_pred ---CCCCcEEEEEEECCCCcc--------h--hhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhh-----------h
Q 010136 268 ---FPFSRFILIGIANAIDLA--------D--RFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLME-----------L 323 (517)
Q Consensus 268 ---~~~~~v~lI~ian~~~~~--------~--~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~-----------~ 323 (517)
.-..++.||+++|...-. + .+.+.+.+| |..-.+...+++.+.-.+|+.+.+.. .
T Consensus 336 ~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsR-FdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~ 414 (509)
T smart00350 336 ITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSR-FDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEAD 414 (509)
T ss_pred EEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCc-eeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccc
Confidence 123678999999976311 1 466888898 75556666777777777777654320 0
Q ss_pred -------------------ccCCCChhHHHHHHHHHHHHh-------------CCHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010136 324 -------------------SYIVFQPQALELCARKVAAAS-------------GDMRKALSVCRSAIEILEAEMRESVSK 371 (517)
Q Consensus 324 -------------------~~~~~~~~ai~~ia~~~~~~~-------------Gd~R~al~ll~~A~~~a~~~~~~~~~~ 371 (517)
-...+++++.+++.+.+.... -.+|..+.+++.|-..|..+.+.
T Consensus 415 ~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~---- 490 (509)
T smart00350 415 EVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSD---- 490 (509)
T ss_pred cccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCC----
Confidence 012567888777776554322 14677778888888888877776
Q ss_pred cccccccccchhhhhhhhhhccCccccHHHHHHHHHHhcc
Q 010136 372 MNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFK 411 (517)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~ 411 (517)
.|+.+||..|+.-+..
T Consensus 491 ------------------------~V~~~Dv~~ai~l~~~ 506 (509)
T smart00350 491 ------------------------VVEEADVEEAIRLLRE 506 (509)
T ss_pred ------------------------ccCHHHHHHHHHHHHH
Confidence 8999999999876543
No 193
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.08 E-value=1.3e-09 Score=116.07 Aligned_cols=216 Identities=14% Similarity=0.104 Sum_probs=140.1
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHH
Q 010136 122 APSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEI 201 (517)
Q Consensus 122 ~p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i 201 (517)
.+..++|+...++.+.+.+..... ...+++|+|++|||||++++++...... ..-.++.|||..+.. ..+
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~--~~~pVlI~Ge~GtGK~~~A~~ih~~s~r-------~~~p~v~v~c~~~~~-~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAA--SDLNVLILGETGVGKELVARAIHAASPR-------ADKPLVYLNCAALPE-SLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhC--CCCcEEEECCCCccHHHHHHHHHHhCCc-------CCCCeEEEEcccCCh-HHH
Confidence 567899999999999999988654 5778999999999999999998765321 113699999998753 222
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCC--------CCCcE
Q 010136 202 FSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF--------PFSRF 273 (517)
Q Consensus 202 ~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~--------~~~~v 273 (517)
...|.+............ -...|. ....-.|||||||.|....|..|..+++.... ....+
T Consensus 255 ----e~~lfG~~~g~~~ga~~~-~~g~~~------~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 323 (509)
T PRK05022 255 ----ESELFGHVKGAFTGAISN-RSGKFE------LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDV 323 (509)
T ss_pred ----HHHhcCccccccCCCccc-CCcchh------hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecce
Confidence 223333222111000000 000122 11234689999999988878777777654211 12467
Q ss_pred EEEEEECCCCcch-----hhcccccccCCCceEEEeCCCCH--HHHHHHHHHHHhhh------ccCCCChhHHHHHHHHH
Q 010136 274 ILIGIANAIDLAD-----RFLPRLQSMNCKPLVVTFRAYSK--DQIIRILQERLMEL------SYIVFQPQALELCARKV 340 (517)
Q Consensus 274 ~lI~ian~~~~~~-----~l~~~l~sr~~~~~~i~f~p~~~--~e~~~IL~~rl~~~------~~~~~~~~ai~~ia~~~ 340 (517)
-+|++++.. +.+ .+...+..+ +....|.+||+.. +++..++.+.+..+ ....|++++++.+..+
T Consensus 324 RiI~~t~~~-l~~~~~~~~f~~dL~~r-l~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y- 400 (509)
T PRK05022 324 RVIAATNRD-LREEVRAGRFRADLYHR-LSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAY- 400 (509)
T ss_pred EEEEecCCC-HHHHHHcCCccHHHHhc-ccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC-
Confidence 788877642 211 233444444 4456899999964 56666665555321 2357899999998774
Q ss_pred HHHhCCHHHHHHHHHHHHHHHH
Q 010136 341 AAASGDMRKALSVCRSAIEILE 362 (517)
Q Consensus 341 ~~~~Gd~R~al~ll~~A~~~a~ 362 (517)
...|++|..-+++.+|+..+.
T Consensus 401 -~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 401 -DWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred -CCCCcHHHHHHHHHHHHHhcC
Confidence 477999999999999886654
No 194
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.08 E-value=3.3e-09 Score=105.86 Aligned_cols=190 Identities=14% Similarity=0.130 Sum_probs=113.4
Q ss_pred cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhc-CC--------------CCceEEEEeCCCC-----CCHHHHHHHH
Q 010136 146 EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEA-GL--------------QQPEVFSINCTSL-----TNTSEIFSKI 205 (517)
Q Consensus 146 ~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~-~~--------------~~~~~v~vn~~~~-----~s~~~i~~~i 205 (517)
+.-+..++|+||+|+||+++++.+++.+.+..... +. .+..+.++..... .+....+...
T Consensus 18 ~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~ 97 (342)
T PRK06964 18 ARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEAD 97 (342)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccch
Confidence 34466788999999999999999999987532110 00 0112222221100 0000000000
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCCCc
Q 010136 206 LLKLQPRKKLNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAIDL 284 (517)
Q Consensus 206 ~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~~ 284 (517)
+.+-+.........-..+.++.+.... .....++..|+|||++|.|.....+.|...++. +..++++|.+|+ -
T Consensus 98 ~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE---Pp~~t~fiL~t~---~ 171 (342)
T PRK06964 98 ADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEE---PPPGTVFLLVSA---R 171 (342)
T ss_pred hhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcC---CCcCcEEEEEEC---C
Confidence 000000000000111245555554431 122345677999999999988778888888875 456777777787 3
Q ss_pred chhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHH
Q 010136 285 ADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRS 356 (517)
Q Consensus 285 ~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~ 356 (517)
++.++|.++|| | +.+.|+|++.+++.+.|..+ + +++. +.+ +....|.+..|+.++..
T Consensus 172 ~~~LLpTI~SR-c--q~i~~~~~~~~~~~~~L~~~--~-----~~~~--~~~---l~~~~Gsp~~Al~~~~~ 228 (342)
T PRK06964 172 IDRLLPTILSR-C--RQFPMTVPAPEAAAAWLAAQ--G-----VADA--DAL---LAEAGGAPLAALALASD 228 (342)
T ss_pred hhhCcHHHHhc-C--EEEEecCCCHHHHHHHHHHc--C-----CChH--HHH---HHHcCCCHHHHHHHHCC
Confidence 78899999999 7 79999999999999999864 2 1221 112 22468889888887633
No 195
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.07 E-value=8.9e-10 Score=110.46 Aligned_cols=213 Identities=16% Similarity=0.159 Sum_probs=137.4
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHH
Q 010136 123 PSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIF 202 (517)
Q Consensus 123 p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~ 202 (517)
.+.++|+...+..+.+.+..... ...+++|+|++||||+++|+.+-..-.. ..-.|+.+||..... ..+-
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~--~~~pVlI~GE~GtGK~~lA~~iH~~s~r-------~~~pfv~v~c~~~~~-~~~~ 74 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAP--LDKPVLIIGERGTGKELIASRLHYLSSR-------WQGPFISLNCAALNE-NLLD 74 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhC--CCCCEEEECCCCCcHHHHHHHHHHhCCc-------cCCCeEEEeCCCCCH-HHHH
Confidence 35689999999999999988764 5678999999999999999998543211 113699999998742 3322
Q ss_pred HHHHHHhCCCCCCC-CCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCC--------CCCcE
Q 010136 203 SKILLKLQPRKKLN-GSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF--------PFSRF 273 (517)
Q Consensus 203 ~~i~~~l~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~--------~~~~v 273 (517)
..++ +..... .+.. ... ...+. ....-.|||||||.|....|..|..+++.... ....+
T Consensus 75 ~~lf----g~~~~~~~g~~-~~~-~g~l~------~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~ 142 (326)
T PRK11608 75 SELF----GHEAGAFTGAQ-KRH-PGRFE------RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNV 142 (326)
T ss_pred HHHc----cccccccCCcc-ccc-CCchh------ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccE
Confidence 2222 221111 1110 000 11122 11234789999999998888888887754221 11356
Q ss_pred EEEEEECCCCcc-----hhhcccccccCCCceEEEeCCCCH--HHHHHHHHHHHhhh----cc---CCCChhHHHHHHHH
Q 010136 274 ILIGIANAIDLA-----DRFLPRLQSMNCKPLVVTFRAYSK--DQIIRILQERLMEL----SY---IVFQPQALELCARK 339 (517)
Q Consensus 274 ~lI~ian~~~~~-----~~l~~~l~sr~~~~~~i~f~p~~~--~e~~~IL~~rl~~~----~~---~~~~~~ai~~ia~~ 339 (517)
-+|++++. ++. ..+.+.+..+ +....|.++|+.. +++..++...+..+ .. ..|++++++.+..+
T Consensus 143 RiI~~s~~-~l~~l~~~g~f~~dL~~~-l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y 220 (326)
T PRK11608 143 RLVCATNA-DLPAMVAEGKFRADLLDR-LAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNY 220 (326)
T ss_pred EEEEeCch-hHHHHHHcCCchHHHHHh-cCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhC
Confidence 77775553 222 1233555555 5566899999964 67777766555321 11 35899999998774
Q ss_pred HHHHhCCHHHHHHHHHHHHHHH
Q 010136 340 VAAASGDMRKALSVCRSAIEIL 361 (517)
Q Consensus 340 ~~~~~Gd~R~al~ll~~A~~~a 361 (517)
...|++|..-+++++|+..+
T Consensus 221 --~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 221 --RWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred --CCCcHHHHHHHHHHHHHHhc
Confidence 57899999999998887543
No 196
>PF14516 AAA_35: AAA-like domain
Probab=99.07 E-value=1.8e-07 Score=94.10 Aligned_cols=209 Identities=14% Similarity=0.144 Sum_probs=120.9
Q ss_pred CCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCC-----CCHHH
Q 010136 126 IVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSL-----TNTSE 200 (517)
Q Consensus 126 l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~-----~s~~~ 200 (517)
.+.|...-+.+.+.|.. .+..++|.||..+|||+++..+.+.+... | +.++++++... .+...
T Consensus 13 Yi~R~~~e~~~~~~i~~-----~G~~~~I~apRq~GKTSll~~l~~~l~~~----~---~~~v~id~~~~~~~~~~~~~~ 80 (331)
T PF14516_consen 13 YIERPPAEQECYQEIVQ-----PGSYIRIKAPRQMGKTSLLLRLLERLQQQ----G---YRCVYIDLQQLGSAIFSDLEQ 80 (331)
T ss_pred ccCchHHHHHHHHHHhc-----CCCEEEEECcccCCHHHHHHHHHHHHHHC----C---CEEEEEEeecCCCcccCCHHH
Confidence 56777444445544432 46789999999999999999998887652 2 57889998764 34555
Q ss_pred HHHHHHHHhCCCCCCCC--------CCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCc---hHHHHHhccCC--
Q 010136 201 IFSKILLKLQPRKKLNG--------STSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDR---AVLHDLFMLTT-- 267 (517)
Q Consensus 201 i~~~i~~~l~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~---~~L~~l~~~~~-- 267 (517)
++..++..+........ ...+...+..+|.+.......+++||+|||||.+..... +.+..|-.|..
T Consensus 81 f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~ 160 (331)
T PF14516_consen 81 FLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQR 160 (331)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhc
Confidence 66666655543222111 011223444555544444567899999999999987432 23222222311
Q ss_pred ---CCCCcEEEEEEECCCCcchhhccccccc-CCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHH
Q 010136 268 ---FPFSRFILIGIANAIDLADRFLPRLQSM-NCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAA 343 (517)
Q Consensus 268 ---~~~~~v~lI~ian~~~~~~~l~~~l~sr-~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~ 343 (517)
..-.++.+|++..+.... ....-.|. +. ...|.+++++.+|+..+++. .. ..+++..++.+-. ..
T Consensus 161 ~~~~~~~~L~li~~~~t~~~~--~~~~~~SPFNI-g~~i~L~~Ft~~ev~~L~~~-~~----~~~~~~~~~~l~~---~t 229 (331)
T PF14516_consen 161 KNNPIWQKLRLILAGSTEDYI--ILDINQSPFNI-GQPIELPDFTPEEVQELAQR-YG----LEFSQEQLEQLMD---WT 229 (331)
T ss_pred ccCcccceEEEEEecCccccc--ccCCCCCCccc-ccceeCCCCCHHHHHHHHHh-hh----ccCCHHHHHHHHH---HH
Confidence 112345555544432211 11111232 22 24789999999999887764 32 2456666555543 56
Q ss_pred hCCHHHHHHHHHHH
Q 010136 344 SGDMRKALSVCRSA 357 (517)
Q Consensus 344 ~Gd~R~al~ll~~A 357 (517)
+|-+-..-.+|...
T Consensus 230 gGhP~Lv~~~~~~l 243 (331)
T PF14516_consen 230 GGHPYLVQKACYLL 243 (331)
T ss_pred CCCHHHHHHHHHHH
Confidence 77765433444443
No 197
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.07 E-value=7.9e-09 Score=97.54 Aligned_cols=135 Identities=18% Similarity=0.228 Sum_probs=93.4
Q ss_pred ceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCC-------C--cchhhcccccccCCCceEEEeCCCCH
Q 010136 239 KMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAI-------D--LADRFLPRLQSMNCKPLVVTFRAYSK 309 (517)
Q Consensus 239 ~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~-------~--~~~~l~~~l~sr~~~~~~i~f~p~~~ 309 (517)
-|-||||||++.|.-..-..|...++- .-+++++++ +|.- + -+.-+.-.+..| + -.|.-.||+.
T Consensus 288 vpGVLFIDEvHMLDIEcFsFlNrAlE~---d~~Piiima-TNrgit~iRGTn~~SphGiP~D~lDR-~--lII~t~py~~ 360 (454)
T KOG2680|consen 288 VPGVLFIDEVHMLDIECFSFLNRALEN---DMAPIIIMA-TNRGITRIRGTNYRSPHGIPIDLLDR-M--LIISTQPYTE 360 (454)
T ss_pred ccceEEEeeehhhhhHHHHHHHHHhhh---ccCcEEEEE-cCCceEEeecCCCCCCCCCcHHHhhh-h--heeecccCcH
Confidence 367999999999965544555554433 234555554 5642 1 111122234444 3 3788899999
Q ss_pred HHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhh
Q 010136 310 DQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASA 389 (517)
Q Consensus 310 ~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (517)
+++.+||..|.+. +...++++|++++... +..-.+|.|++++..|...+.+....
T Consensus 361 ~d~~~IL~iRc~E-Edv~m~~~A~d~Lt~i--~~~tsLRYai~Lit~a~~~~~krk~~---------------------- 415 (454)
T KOG2680|consen 361 EDIKKILRIRCQE-EDVEMNPDALDLLTKI--GEATSLRYAIHLITAASLVCLKRKGK---------------------- 415 (454)
T ss_pred HHHHHHHHhhhhh-hccccCHHHHHHHHHh--hhhhhHHHHHHHHHHHHHHHHHhcCc----------------------
Confidence 9999999999864 2357899999998774 34557999999999888887766544
Q ss_pred hhccCccccHHHHHHHHHHhcc
Q 010136 390 FEFFNSQVRVDHMAVALSNTFK 411 (517)
Q Consensus 390 ~~~~~~~Vt~~~v~~a~~~~~~ 411 (517)
.|..+|+.+|..-...
T Consensus 416 ------~v~~~di~r~y~LFlD 431 (454)
T KOG2680|consen 416 ------VVEVDDIERVYRLFLD 431 (454)
T ss_pred ------eeehhHHHHHHHHHhh
Confidence 7899999998865543
No 198
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.06 E-value=1.7e-09 Score=113.48 Aligned_cols=138 Identities=12% Similarity=0.115 Sum_probs=95.2
Q ss_pred eEEEEEeCcchhcccCchHHHHHhccCCC----------CCCcEEEEEEECCCC--------------------cchhhc
Q 010136 240 MMLIIADELDYLITRDRAVLHDLFMLTTF----------PFSRFILIGIANAID--------------------LADRFL 289 (517)
Q Consensus 240 ~~vI~iDEiD~L~~~~~~~L~~l~~~~~~----------~~~~v~lI~ian~~~--------------------~~~~l~ 289 (517)
.-+|||||++.|....++.|++.++.... -..++.+|+++|... +..++.
T Consensus 296 ~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is 375 (499)
T TIGR00368 296 NGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLS 375 (499)
T ss_pred CCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhcc
Confidence 36999999999988888889888754221 125789999999741 122577
Q ss_pred ccccccCCCceEEEeCCCCHHHHHH--------HHHHHHh-----h---hcc------------------CCCChhHHHH
Q 010136 290 PRLQSMNCKPLVVTFRAYSKDQIIR--------ILQERLM-----E---LSY------------------IVFQPQALEL 335 (517)
Q Consensus 290 ~~l~sr~~~~~~i~f~p~~~~e~~~--------IL~~rl~-----~---~~~------------------~~~~~~ai~~ 335 (517)
..+.+| |.. .+.+++++.+++.+ .++.|+. . +.. ..+++++.++
T Consensus 376 ~pllDR-~dl-~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~ 453 (499)
T TIGR00368 376 GPFLDR-IDL-SVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDAND 453 (499)
T ss_pred HhHHhh-CCE-EEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHH
Confidence 888888 755 78888876655421 1222221 0 100 2345566666
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHH
Q 010136 336 CARKVAAASGDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALS 407 (517)
Q Consensus 336 ia~~~~~~~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~ 407 (517)
+.+.+....=.+|....+++-|+.+|..++.+ .|+.+||.+|+.
T Consensus 454 l~~a~~~~~lS~R~~~rilrvArTiAdL~g~~----------------------------~i~~~hv~eA~~ 497 (499)
T TIGR00368 454 LEGALNKLGLSSRATHRILKVARTIADLKEEK----------------------------NISREHLAEAIE 497 (499)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHhhcCCC----------------------------CCCHHHHHHHHh
Confidence 65555444557899999999999999998877 899999999985
No 199
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.06 E-value=3.8e-09 Score=107.60 Aligned_cols=172 Identities=13% Similarity=0.130 Sum_probs=96.7
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFS 203 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~ 203 (517)
++++..+..++.+...|. ..++++|+||||||||++|+.++..+.... .. ..+..|......+...+
T Consensus 175 ~d~~i~e~~le~l~~~L~------~~~~iil~GppGtGKT~lA~~la~~l~~~~---~~--~~v~~VtFHpsySYeDF-- 241 (459)
T PRK11331 175 NDLFIPETTIETILKRLT------IKKNIILQGPPGVGKTFVARRLAYLLTGEK---AP--QRVNMVQFHQSYSYEDF-- 241 (459)
T ss_pred hcccCCHHHHHHHHHHHh------cCCCEEEECCCCCCHHHHHHHHHHHhcCCc---cc--ceeeEEeecccccHHHH--
Confidence 346677777777766654 357999999999999999999988774210 11 12223333332232222
Q ss_pred HHHHHhCCCCCCCCCCCHH-HHHHHHHHhhhccCCCceEEEEEeCcchhcccC-chHHHHHhccC---------------
Q 010136 204 KILLKLQPRKKLNGSTSPL-QYLQNLYSQKLHSSVMKMMLIIADELDYLITRD-RAVLHDLFMLT--------------- 266 (517)
Q Consensus 204 ~i~~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~-~~~L~~l~~~~--------------- 266 (517)
...+ .....+.... ..+.+++.. .......+.+||||||+...... ...+..+++..
T Consensus 242 --I~G~---rP~~vgy~~~~G~f~~~~~~-A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~ 315 (459)
T PRK11331 242 --IQGY---RPNGVGFRRKDGIFYNFCQQ-AKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSEN 315 (459)
T ss_pred --hccc---CCCCCCeEecCchHHHHHHH-HHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeecccc
Confidence 2111 1111111100 012222221 11123467999999999875432 23444444421
Q ss_pred ----CCCCCcEEEEEEECCCCcc-hhhcccccccCCCceEEEeCC-CCHHHHHHHHH
Q 010136 267 ----TFPFSRFILIGIANAIDLA-DRFLPRLQSMNCKPLVVTFRA-YSKDQIIRILQ 317 (517)
Q Consensus 267 ----~~~~~~v~lI~ian~~~~~-~~l~~~l~sr~~~~~~i~f~p-~~~~e~~~IL~ 317 (517)
-....++.+||+.|+.|.. ..++.++++| | ..|.+.| |+...+.+.+.
T Consensus 316 d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRR-F--~fi~i~p~~~~~~~~~~l~ 369 (459)
T PRK11331 316 DEERFYVPENVYIIGLMNTADRSLAVVDYALRRR-F--SFIDIEPGFDTPQFRNFLL 369 (459)
T ss_pred ccccccCCCCeEEEEecCccccchhhccHHHHhh-h--heEEecCCCChHHHHHHHH
Confidence 0123689999999987722 2468888888 7 4666666 67666665544
No 200
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.05 E-value=9.1e-11 Score=102.80 Aligned_cols=121 Identities=21% Similarity=0.256 Sum_probs=76.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYS 230 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~ 230 (517)
+++|+||||||||++++.+++.+. ..++.++|....+..+++....-. .+...-..+.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~----------~~~~~i~~~~~~~~~dl~g~~~~~-~~~~~~~~~~----------- 58 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLG----------RPVIRINCSSDTTEEDLIGSYDPS-NGQFEFKDGP----------- 58 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHT----------CEEEEEE-TTTSTHHHHHCEEET--TTTTCEEE-C-----------
T ss_pred CEEEECCCCCCHHHHHHHHHHHhh----------cceEEEEeccccccccceeeeeec-cccccccccc-----------
Confidence 589999999999999999999883 378999999998888864322111 0000000000
Q ss_pred hhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCC----------CCC------cEEEEEEECCCC-cchhhccccc
Q 010136 231 QKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF----------PFS------RFILIGIANAID-LADRFLPRLQ 293 (517)
Q Consensus 231 ~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~----------~~~------~v~lI~ian~~~-~~~~l~~~l~ 293 (517)
......++.++||||++.....-+..|..+++.... ... .+.+|+++|+.+ -...+.++++
T Consensus 59 --l~~a~~~~~il~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~ 136 (139)
T PF07728_consen 59 --LVRAMRKGGILVLDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALL 136 (139)
T ss_dssp --CCTTHHEEEEEEESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHH
T ss_pred --ccccccceeEEEECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHH
Confidence 001122678999999998876556667776654110 011 389999999866 3446788888
Q ss_pred cc
Q 010136 294 SM 295 (517)
Q Consensus 294 sr 295 (517)
+|
T Consensus 137 ~R 138 (139)
T PF07728_consen 137 DR 138 (139)
T ss_dssp TT
T ss_pred hh
Confidence 87
No 201
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.05 E-value=3.6e-08 Score=107.93 Aligned_cols=166 Identities=17% Similarity=0.135 Sum_probs=91.2
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcc-----------------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCce
Q 010136 124 STIVCREDEQKKVLEFCKKNLEE-----------------EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPE 186 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~-----------------~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~ 186 (517)
..++|.+.....|.-.|...... ....++||+|+||||||.+++++.+......-..|. .
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~---~ 526 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGK---S 526 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCC---C
Confidence 47899998777666555332210 012289999999999999999987642211000000 1
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccC
Q 010136 187 VFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLT 266 (517)
Q Consensus 187 ~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~ 266 (517)
+..++|.... .+ .....+......| .+. ....-+++|||+|.+....|..|.++++-.
T Consensus 527 ~s~vgLTa~~----~~---~d~~tG~~~le~G---------aLv------lAdgGtL~IDEidkms~~~Q~aLlEaMEqq 584 (915)
T PTZ00111 527 SSSVGLTASI----KF---NESDNGRAMIQPG---------AVV------LANGGVCCIDELDKCHNESRLSLYEVMEQQ 584 (915)
T ss_pred Cccccccchh----hh---cccccCcccccCC---------cEE------EcCCCeEEecchhhCCHHHHHHHHHHHhCC
Confidence 2222222210 00 0000000000000 010 112248999999999888888888888542
Q ss_pred C----------CCCCcEEEEEEECCCC--------cchh--hcccccccCCCceEEEeCCCCHHHHHHH
Q 010136 267 T----------FPFSRFILIGIANAID--------LADR--FLPRLQSMNCKPLVVTFRAYSKDQIIRI 315 (517)
Q Consensus 267 ~----------~~~~~v~lI~ian~~~--------~~~~--l~~~l~sr~~~~~~i~f~p~~~~e~~~I 315 (517)
. .-..++.||+++|... +.+. +.+.+.|| |..--+.+..++.+.=..|
T Consensus 585 tIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSR-FDLIf~l~D~~d~~~D~~l 652 (915)
T PTZ00111 585 TVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTR-FDLIYLVLDHIDQDTDQLI 652 (915)
T ss_pred EEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhh-hcEEEEecCCCChHHHHHH
Confidence 2 1236899999999853 1122 45778888 7554555666665543444
No 202
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.05 E-value=6.3e-09 Score=109.99 Aligned_cols=225 Identities=12% Similarity=0.109 Sum_probs=135.1
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHh-cCCCCceEEEEeCCCCCCHH
Q 010136 121 TAPSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKE-AGLQQPEVFSINCTSLTNTS 199 (517)
Q Consensus 121 ~~p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~-~~~~~~~~v~vn~~~~~s~~ 199 (517)
+..+.++|....++++...+..... ...+++|+|++||||+++|+.+-..+...... .....-.|+.|||..+..
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~--s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e-- 291 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYAR--SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAE-- 291 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhC--CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCCh--
Confidence 4456799999999999999887654 56789999999999999999987652110000 000123699999998753
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCC--------CCC
Q 010136 200 EIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF--------PFS 271 (517)
Q Consensus 200 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~--------~~~ 271 (517)
.. +-..|.+...+.........-.-+|. ....-.||||||+.|....|..|..+++.... ...
T Consensus 292 ~l---leseLFG~~~gaftga~~~~~~Gl~e------~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~ 362 (538)
T PRK15424 292 SL---LEAELFGYEEGAFTGSRRGGRAGLFE------IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPV 362 (538)
T ss_pred hh---HHHHhcCCccccccCccccccCCchh------ccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceecc
Confidence 21 22333333221111100000001222 12234799999999988878777777754211 123
Q ss_pred cEEEEEEECCCCcchh-----hcccccccCCCceEEEeCCCCH--HHHHHHHHHHHhhh---ccCCCChhHHHHHHHHH-
Q 010136 272 RFILIGIANAIDLADR-----FLPRLQSMNCKPLVVTFRAYSK--DQIIRILQERLMEL---SYIVFQPQALELCARKV- 340 (517)
Q Consensus 272 ~v~lI~ian~~~~~~~-----l~~~l~sr~~~~~~i~f~p~~~--~e~~~IL~~rl~~~---~~~~~~~~ai~~ia~~~- 340 (517)
.+-+|+++|. ++... +...+.-| +....|.+||+.. +++..++...+... ....++++++....+..
T Consensus 363 dvRiIaat~~-~L~~~v~~g~Fr~dL~yr-L~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~ 440 (538)
T PRK15424 363 DVRVISATHC-DLEEDVRQGRFRRDLFYR-LSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCET 440 (538)
T ss_pred ceEEEEecCC-CHHHHHhcccchHHHHHH-hcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHH
Confidence 5677876653 22221 22334444 4556899999964 67777777666532 12247777764332211
Q ss_pred ----HHHhCCHHHHHHHHHHHHHH
Q 010136 341 ----AAASGDMRKALSVCRSAIEI 360 (517)
Q Consensus 341 ----~~~~Gd~R~al~ll~~A~~~ 360 (517)
....|++|..-+++++++.+
T Consensus 441 ~L~~y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 441 LLLHYDWPGNVRELRNLMERLALF 464 (538)
T ss_pred HHHhCCCCchHHHHHHHHHHHHHh
Confidence 13679999999999888764
No 203
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.03 E-value=7.1e-09 Score=103.26 Aligned_cols=242 Identities=20% Similarity=0.191 Sum_probs=146.9
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCC---HHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTN---TSE 200 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s---~~~ 200 (517)
..++|.+. +...|--..-...-++++|.|+.||||||++|+++.-|..+ .++. .|.-.-+ +..
T Consensus 17 ~aivGqd~----lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~---------~~V~-gc~f~cdP~~P~~ 82 (423)
T COG1239 17 TAIVGQDP----LKLALGLNAVDPQIGGALIAGEKGTAKSTLARALADLLPEI---------EVVI-GCPFNCDPDDPEE 82 (423)
T ss_pred hhhcCchH----HHHHHhhhhcccccceeEEecCCCccHHHHHHHHHHhCCcc---------ceec-CCCCCCCCCChhh
Confidence 45677766 33333222334567899999999999999999999988753 2222 4432222 222
Q ss_pred HHHHHHHHhCCCCC------------CC---------CCCCHHHHHH---HHHHhhhccCCCceEEEEEeCcchhcccCc
Q 010136 201 IFSKILLKLQPRKK------------LN---------GSTSPLQYLQ---NLYSQKLHSSVMKMMLIIADELDYLITRDR 256 (517)
Q Consensus 201 i~~~i~~~l~~~~~------------~~---------~~~~~~~~l~---~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~ 256 (517)
....+...+..... .+ .+....+.++ +.|....+. ..+.-|+.|||+..|...-+
T Consensus 83 ~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa-~AnRGIlYvDEvnlL~d~lv 161 (423)
T COG1239 83 MCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLA-RANRGILYVDEVNLLDDHLV 161 (423)
T ss_pred hhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchh-hccCCEEEEeccccccHHHH
Confidence 22222222100000 00 0111122222 122212221 23346999999999987777
Q ss_pred hHHHHHhccC----------CCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHh--hh-
Q 010136 257 AVLHDLFMLT----------TFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLM--EL- 323 (517)
Q Consensus 257 ~~L~~l~~~~----------~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~--~~- 323 (517)
++|.+.+... .....++++||+.|.. ...|-|.|+.| |+.+.=.-.|.+.++..+|+..++. ..
T Consensus 162 d~LLd~aaeG~n~vereGisi~hpa~fvligTmNPE--eGeLrpqLlDR-fg~~v~~~~~~~~~~rv~Ii~r~~~f~~~P 238 (423)
T COG1239 162 DALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPE--EGELRPQLLDR-FGLEVDTHYPLDLEERVEIIRRRLAFEAVP 238 (423)
T ss_pred HHHHHHHHhCCceeeeCceeeccCccEEEEeecCcc--ccccchhhHhh-hcceeeccCCCCHHHHHHHHHHHHHhhcCc
Confidence 7777766541 1234789999999965 34578999999 8776666677788888888887664 10
Q ss_pred -------------------------ccCCCChhHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 010136 324 -------------------------SYIVFQPQALELCARKVAAASG-DMRKALSVCRSAIEILEAEMRESVSKMNSASA 377 (517)
Q Consensus 324 -------------------------~~~~~~~~ai~~ia~~~~~~~G-d~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~ 377 (517)
....+++++..+|+..+....- ..|..+.+.+.|..+|...++.
T Consensus 239 e~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g~radi~~~r~a~a~aa~~Gr~---------- 308 (423)
T COG1239 239 EAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVDGHRADIVVVRAAKALAALRGRT---------- 308 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHhcCce----------
Confidence 1244556666666665544332 2566667777777777777766
Q ss_pred cccchhhhhhhhhhccCccccHHHHHHHHHHhcc
Q 010136 378 EQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFK 411 (517)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~ 411 (517)
.|+.+++.+|..-...
T Consensus 309 ------------------~v~~~Di~~a~~l~l~ 324 (423)
T COG1239 309 ------------------EVEEEDIREAAELALL 324 (423)
T ss_pred ------------------eeehhhHHHHHhhhhh
Confidence 7899999999876644
No 204
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=2.3e-08 Score=98.94 Aligned_cols=185 Identities=14% Similarity=0.162 Sum_probs=112.8
Q ss_pred HHHHHHhhccCC-CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCC--
Q 010136 137 LEFCKKNLEEEK-AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRK-- 213 (517)
Q Consensus 137 ~~~L~~~l~~~~-~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~-- 213 (517)
...|...+..++ +..++|+||.|+||+++++.+++.+...... + -.|....+-.. +...-....
T Consensus 12 ~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~-~--------~~Cg~C~sC~~----~~~g~HPD~~~ 78 (319)
T PRK06090 12 WQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQ-S--------EACGFCHSCEL----MQSGNHPDLHV 78 (319)
T ss_pred HHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCC-C--------CCCCCCHHHHH----HHcCCCCCEEE
Confidence 334444454444 4568899999999999999999988753210 0 01211111111 000000000
Q ss_pred --CC-CCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCCCcchhhc
Q 010136 214 --KL-NGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAIDLADRFL 289 (517)
Q Consensus 214 --~~-~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~ 289 (517)
+. ....-..+.++.+.... .....++..|++||++|.|.....+.|...++.+ ..+..+|.+++. ++++.
T Consensus 79 i~p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEP---p~~t~fiL~t~~---~~~lL 152 (319)
T PRK06090 79 IKPEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEP---APNCLFLLVTHN---QKRLL 152 (319)
T ss_pred EecCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCC---CCCeEEEEEECC---hhhCh
Confidence 00 00011134444433221 1223456689999999999887788888888774 456777777874 78899
Q ss_pred ccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHH
Q 010136 290 PRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCR 355 (517)
Q Consensus 290 ~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~ 355 (517)
|.++|| | +.+.|++++.+++.+.|... + ++ ....+++ ...|.+..|+.++.
T Consensus 153 pTI~SR-C--q~~~~~~~~~~~~~~~L~~~--~-----~~--~~~~~l~---l~~G~p~~A~~~~~ 203 (319)
T PRK06090 153 PTIVSR-C--QQWVVTPPSTAQAMQWLKGQ--G-----IT--VPAYALK---LNMGSPLKTLAMMK 203 (319)
T ss_pred HHHHhc-c--eeEeCCCCCHHHHHHHHHHc--C-----Cc--hHHHHHH---HcCCCHHHHHHHhC
Confidence 999999 8 79999999999999988743 1 12 1122322 46788888888764
No 205
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=2.4e-08 Score=100.06 Aligned_cols=155 Identities=14% Similarity=0.238 Sum_probs=105.1
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCC---------CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCC
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEK---------AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTS 194 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~---------~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~ 194 (517)
+.++--.+..++|.+-|..++++.. .++-|||||||||||+++.++|+.|. +.+.-++...
T Consensus 201 ~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~----------ydIydLeLt~ 270 (457)
T KOG0743|consen 201 ETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLN----------YDIYDLELTE 270 (457)
T ss_pred cccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcC----------CceEEeeecc
Confidence 3455545555566666666555332 34799999999999999999999875 4566666555
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhccc---Cc---------------
Q 010136 195 LTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITR---DR--------------- 256 (517)
Q Consensus 195 ~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~---~~--------------- 256 (517)
..+..+ |++++. ......||+|.+||.-..- .+
T Consensus 271 v~~n~d------------------------Lr~LL~-----~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTl 321 (457)
T KOG0743|consen 271 VKLDSD------------------------LRHLLL-----ATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTL 321 (457)
T ss_pred ccCcHH------------------------HHHHHH-----hCCCCcEEEEeecccccccccccccccccccCCcceeeh
Confidence 433222 666665 2344579999999976431 11
Q ss_pred hHHHHHhcc--CCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHh
Q 010136 257 AVLHDLFML--TTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLM 321 (517)
Q Consensus 257 ~~L~~l~~~--~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~ 321 (517)
.-|.++++. .... .-=++|++|| ..++|||+|.+++.-...|++.-.+.++...+....+.
T Consensus 322 SGLLNfiDGlwSscg-~ERIivFTTN---h~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~ 384 (457)
T KOG0743|consen 322 SGLLNFLDGLWSSCG-DERIIVFTTN---HKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLG 384 (457)
T ss_pred HHhhhhhccccccCC-CceEEEEecC---ChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcC
Confidence 125555554 2222 2445666788 78999999999755567999999999999888887775
No 206
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.98 E-value=2.8e-09 Score=116.96 Aligned_cols=212 Identities=14% Similarity=0.203 Sum_probs=137.5
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHH
Q 010136 121 TAPSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSE 200 (517)
Q Consensus 121 ~~p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~ 200 (517)
+..+.++|....+..+.+.+..... ...+++|+|++||||+++|+++-+.... ..-.|+.|||..+.. ..
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~--~~~pvli~Ge~GtGK~~~A~~ih~~s~r-------~~~pfv~vnc~~~~~-~~ 391 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAK--SSFPVLLCGEEGVGKALLAQAIHNESER-------AAGPYIAVNCQLYPD-EA 391 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhC--cCCCEEEECCCCcCHHHHHHHHHHhCCc-------cCCCeEEEECCCCCh-HH
Confidence 3456799999999999999888765 4567999999999999999998665321 113699999998753 22
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCC--------CCc
Q 010136 201 IFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFP--------FSR 272 (517)
Q Consensus 201 i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~--------~~~ 272 (517)
+ ..++.+......... ....|. ....-+||||||+.|....|..|..+++..... ...
T Consensus 392 ~----~~elfg~~~~~~~~~----~~g~~~------~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~ 457 (638)
T PRK11388 392 L----AEEFLGSDRTDSENG----RLSKFE------LAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVD 457 (638)
T ss_pred H----HHHhcCCCCcCccCC----CCCcee------ECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEee
Confidence 2 222322211000000 000121 122357999999999988888888877653211 125
Q ss_pred EEEEEEECCCCcch-----hhcccccccCCCceEEEeCCCCH--HHHHHHHHHHHhhhc-----cCCCChhHHHHHHHHH
Q 010136 273 FILIGIANAIDLAD-----RFLPRLQSMNCKPLVVTFRAYSK--DQIIRILQERLMELS-----YIVFQPQALELCARKV 340 (517)
Q Consensus 273 v~lI~ian~~~~~~-----~l~~~l~sr~~~~~~i~f~p~~~--~e~~~IL~~rl~~~~-----~~~~~~~ai~~ia~~~ 340 (517)
+-+|++++. ++.+ .+.+.+.-+ +....|.+||+.. +++..++...+..+. ...+++++++.+.++
T Consensus 458 ~riI~~t~~-~l~~~~~~~~f~~dL~~~-l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y- 534 (638)
T PRK11388 458 VRVIATTTA-DLAMLVEQNRFSRQLYYA-LHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSY- 534 (638)
T ss_pred EEEEEeccC-CHHHHHhcCCChHHHhhh-hceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcC-
Confidence 667876663 2222 223334444 4556899999964 567777666654321 236899999998773
Q ss_pred HHHhCCHHHHHHHHHHHHHH
Q 010136 341 AAASGDMRKALSVCRSAIEI 360 (517)
Q Consensus 341 ~~~~Gd~R~al~ll~~A~~~ 360 (517)
...|++|...++++.|+..
T Consensus 535 -~WPGNvreL~~~l~~~~~~ 553 (638)
T PRK11388 535 -RWPGNDFELRSVIENLALS 553 (638)
T ss_pred -CCCChHHHHHHHHHHHHHh
Confidence 4579999999999988754
No 207
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.98 E-value=1.4e-08 Score=109.16 Aligned_cols=138 Identities=20% Similarity=0.214 Sum_probs=96.1
Q ss_pred eEEEEEeCcchhcccCchHHHHHhccCC------------------CCCCcEEEEEEECCCCcchhhcccccccCCCc--
Q 010136 240 MMLIIADELDYLITRDRAVLHDLFMLTT------------------FPFSRFILIGIANAIDLADRFLPRLQSMNCKP-- 299 (517)
Q Consensus 240 ~~vI~iDEiD~L~~~~~~~L~~l~~~~~------------------~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~-- 299 (517)
.-+|||||++.|....|..|..+++... .-...+.+|+++|. ++...++|.+.+| |..
T Consensus 227 GGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~-~ll~~~dpdL~~r-fk~~~ 304 (637)
T PRK13765 227 KGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNL-DALENMHPALRSR-IKGYG 304 (637)
T ss_pred CcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCc-CHHHhhhHHHHHH-hccCe
Confidence 3589999999997666777776664311 01246778887776 4556678888887 531
Q ss_pred eEEEeCCC---CHHHHHHHHHHHHhhh----ccCCCChhHHHHHHHHHHHHhCC-------HHHHHHHHHHHHHHHHHHH
Q 010136 300 LVVTFRAY---SKDQIIRILQERLMEL----SYIVFQPQALELCARKVAAASGD-------MRKALSVCRSAIEILEAEM 365 (517)
Q Consensus 300 ~~i~f~p~---~~~e~~~IL~~rl~~~----~~~~~~~~ai~~ia~~~~~~~Gd-------~R~al~ll~~A~~~a~~~~ 365 (517)
..+.|..- +.+.+..+++...+.. ....|+++++..+.+.+.+..|+ .|...++++.|..+|..++
T Consensus 305 v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~ 384 (637)
T PRK13765 305 YEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVAGDIARSEG 384 (637)
T ss_pred EEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHHHhhc
Confidence 45667643 4555555554322221 12478999999999888777776 7888899999999998887
Q ss_pred HhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHH
Q 010136 366 RESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALS 407 (517)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~ 407 (517)
.. .|+.+||.+|+.
T Consensus 385 ~~----------------------------~i~~~~v~~a~~ 398 (637)
T PRK13765 385 AE----------------------------LTTAEHVLEAKK 398 (637)
T ss_pred cc----------------------------eecHHHHHHHHH
Confidence 66 788888888764
No 208
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=5.6e-09 Score=109.81 Aligned_cols=176 Identities=20% Similarity=0.261 Sum_probs=118.6
Q ss_pred CCCcHHHHHHHHHHHHHhhccC-----CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHH
Q 010136 126 IVCREDEQKKVLEFCKKNLEEE-----KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSE 200 (517)
Q Consensus 126 l~gRe~e~~~l~~~L~~~l~~~-----~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~ 200 (517)
..+++..+..+..++..-..-. ....++++|+||||||+++++++.+++ .+++.++|.++.+...
T Consensus 403 ~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg----------~h~~evdc~el~~~s~ 472 (953)
T KOG0736|consen 403 PPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELG----------LHLLEVDCYELVAESA 472 (953)
T ss_pred CccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhC----------CceEeccHHHHhhccc
Confidence 4566666655555555433322 245799999999999999999999986 4799999977532211
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCc--------hHHHHHhc--cCCCCC
Q 010136 201 IFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDR--------AVLHDLFM--LTTFPF 270 (517)
Q Consensus 201 i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~--------~~L~~l~~--~~~~~~ 270 (517)
......+...|. .++...|.||||-.+|-|..... ..+..++. ....+.
T Consensus 473 ------------------~~~etkl~~~f~---~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~ 531 (953)
T KOG0736|consen 473 ------------------SHTETKLQAIFS---RARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSC 531 (953)
T ss_pred ------------------chhHHHHHHHHH---HHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCC
Confidence 112445666665 34567899999999999875421 23444443 233456
Q ss_pred CcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhH-HHHHHHHH
Q 010136 271 SRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQA-LELCARKV 340 (517)
Q Consensus 271 ~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~a-i~~ia~~~ 340 (517)
..++|||++++ .+.+.+.+++- | .+.|.++.++.+|..+||+-.+... .++.+. .+.+++++
T Consensus 532 ~~~ivv~t~~s---~~~lp~~i~~~-f-~~ei~~~~lse~qRl~iLq~y~~~~---~~n~~v~~k~~a~~t 594 (953)
T KOG0736|consen 532 PPVIVVATTSS---IEDLPADIQSL-F-LHEIEVPALSEEQRLEILQWYLNHL---PLNQDVNLKQLARKT 594 (953)
T ss_pred CceEEEEeccc---cccCCHHHHHh-h-hhhccCCCCCHHHHHHHHHHHHhcc---ccchHHHHHHHHHhc
Confidence 78999998885 45566677775 3 4699999999999999999887654 344333 34455443
No 209
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.98 E-value=4.6e-09 Score=111.95 Aligned_cols=218 Identities=17% Similarity=0.179 Sum_probs=137.6
Q ss_pred cCCCCCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCH
Q 010136 119 VSTAPSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNT 198 (517)
Q Consensus 119 ~~~~p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~ 198 (517)
..+..+.++|....+.++...+..... ....++|+|++||||+++|+++-..... ..-.|+.+||..+..
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~--~~~pvlI~GE~GtGK~~lA~aiH~~s~r-------~~~pfv~inca~~~~- 268 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAM--LDAPLLITGDTGTGKDLLAYACHLRSPR-------GKKPFLALNCASIPD- 268 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhC--CCCCEEEECCCCccHHHHHHHHHHhCCC-------CCCCeEEeccccCCH-
Confidence 445667899999999999988887654 4667999999999999999996433211 112689999998753
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCC--------CC
Q 010136 199 SEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF--------PF 270 (517)
Q Consensus 199 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~--------~~ 270 (517)
..+ -..|.+......... .+.-..+|. ....-.|||||||.|....|..|..+++.... ..
T Consensus 269 ~~~----e~elFG~~~~~~~~~-~~~~~g~~e------~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~ 337 (520)
T PRK10820 269 DVV----ESELFGHAPGAYPNA-LEGKKGFFE------QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVH 337 (520)
T ss_pred HHH----HHHhcCCCCCCcCCc-ccCCCChhh------hcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCccee
Confidence 222 222322221110000 000011232 11234789999999988888777777754211 12
Q ss_pred CcEEEEEEECCCCcch-----hhcccccccCCCceEEEeCCCCH--HHHHHHHHHHHhhh------ccCCCChhHHHHHH
Q 010136 271 SRFILIGIANAIDLAD-----RFLPRLQSMNCKPLVVTFRAYSK--DQIIRILQERLMEL------SYIVFQPQALELCA 337 (517)
Q Consensus 271 ~~v~lI~ian~~~~~~-----~l~~~l~sr~~~~~~i~f~p~~~--~e~~~IL~~rl~~~------~~~~~~~~ai~~ia 337 (517)
..+-+|++++. ++.+ .+.+.+..| +....|.+||+.. +++..++...+..+ ....+++++++.+.
T Consensus 338 ~~vRiI~st~~-~l~~l~~~g~f~~dL~~r-L~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~ 415 (520)
T PRK10820 338 VDVRVICATQK-NLVELVQKGEFREDLYYR-LNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLT 415 (520)
T ss_pred eeeEEEEecCC-CHHHHHHcCCccHHHHhh-cCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHh
Confidence 35667775543 2222 133445555 5557899999964 46666555444321 23468999999987
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHH
Q 010136 338 RKVAAASGDMRKALSVCRSAIEIL 361 (517)
Q Consensus 338 ~~~~~~~Gd~R~al~ll~~A~~~a 361 (517)
.+ ...|++|..-+++.+|+..+
T Consensus 416 ~y--~WPGNvreL~nvl~~a~~~~ 437 (520)
T PRK10820 416 RY--GWPGNVRQLKNAIYRALTQL 437 (520)
T ss_pred cC--CCCCHHHHHHHHHHHHHHhC
Confidence 63 47899999999998888654
No 210
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.95 E-value=9e-09 Score=103.53 Aligned_cols=220 Identities=17% Similarity=0.158 Sum_probs=139.9
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHH
Q 010136 123 PSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIF 202 (517)
Q Consensus 123 p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~ 202 (517)
.+.++|-....+++.+.++.. .....+++|.|++||||+.+|+.+-..-... .+ -.||.+||..+..--...
T Consensus 77 ~~~LIG~~~~~~~~~eqik~~--ap~~~~vLi~GetGtGKel~A~~iH~~s~r~---~~---~PFI~~NCa~~~en~~~~ 148 (403)
T COG1221 77 LDDLIGESPSLQELREQIKAY--APSGLPVLIIGETGTGKELFARLIHALSARR---AE---APFIAFNCAAYSENLQEA 148 (403)
T ss_pred hhhhhccCHHHHHHHHHHHhh--CCCCCcEEEecCCCccHHHHHHHHHHhhhcc---cC---CCEEEEEHHHhCcCHHHH
Confidence 357899999999999998873 3456789999999999999999987322211 11 369999999886543321
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCC--------CCCCcEE
Q 010136 203 SKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTT--------FPFSRFI 274 (517)
Q Consensus 203 ~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~--------~~~~~v~ 274 (517)
. |.|..++...+. ...=.-+|. .-..-.||+|||..|....|..|..+++... .....|-
T Consensus 149 e-----LFG~~kGaftGa-~~~k~Glfe------~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVR 216 (403)
T COG1221 149 E-----LFGHEKGAFTGA-QGGKAGLFE------QANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVR 216 (403)
T ss_pred H-----Hhccccceeecc-cCCcCchhe------ecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCce
Confidence 1 222222111000 000011233 1223489999999999988888888777621 2346788
Q ss_pred EEEEECCCCcchhhcc--cccccCCCceEEEeCCCCH--HHHHHHHHHHHh------hhccCCCChhHHHHHHHHHHHHh
Q 010136 275 LIGIANAIDLADRFLP--RLQSMNCKPLVVTFRAYSK--DQIIRILQERLM------ELSYIVFQPQALELCARKVAAAS 344 (517)
Q Consensus 275 lI~ian~~~~~~~l~~--~l~sr~~~~~~i~f~p~~~--~e~~~IL~~rl~------~~~~~~~~~~ai~~ia~~~~~~~ 344 (517)
+|++|| .++.+.+.. .+..| +.+..|.+||+.. .|+...+.+-+. +.....+.++++..+-.+ ...
T Consensus 217 li~AT~-~~l~~~~~~g~dl~~r-l~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y--~~p 292 (403)
T COG1221 217 LICATT-EDLEEAVLAGADLTRR-LNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAY--DWP 292 (403)
T ss_pred eeeccc-cCHHHHHHhhcchhhh-hcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC--CCC
Confidence 888555 556666666 66665 4567999999865 444444444332 122234445666665442 368
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 010136 345 GDMRKALSVCRSAIEILEAEMR 366 (517)
Q Consensus 345 Gd~R~al~ll~~A~~~a~~~~~ 366 (517)
|++|...+++++++..+..+..
T Consensus 293 GNirELkN~Ve~~~~~~~~~~~ 314 (403)
T COG1221 293 GNIRELKNLVERAVAQASGEGQ 314 (403)
T ss_pred CcHHHHHHHHHHHHHHhccccC
Confidence 9999999999999876654433
No 211
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.88 E-value=2.5e-08 Score=110.27 Aligned_cols=214 Identities=15% Similarity=0.192 Sum_probs=136.6
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHH
Q 010136 122 APSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEI 201 (517)
Q Consensus 122 ~p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i 201 (517)
..+.++|+...++.+.+.+..... ...+++|+|++|||||++|+++...... ....++.+||..... ..+
T Consensus 374 ~~~~liG~S~~~~~~~~~~~~~a~--~~~pVLI~GE~GTGK~~lA~~ih~~s~r-------~~~~~v~i~c~~~~~-~~~ 443 (686)
T PRK15429 374 EFGEIIGRSEAMYSVLKQVEMVAQ--SDSTVLILGETGTGKELIARAIHNLSGR-------NNRRMVKMNCAAMPA-GLL 443 (686)
T ss_pred cccceeecCHHHHHHHHHHHHHhC--CCCCEEEECCCCcCHHHHHHHHHHhcCC-------CCCCeEEEecccCCh-hHh
Confidence 345799999999999888887653 4568999999999999999998654321 113699999998742 222
Q ss_pred HHHHHHHhCCCCCCC-CCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCC--------CCCCc
Q 010136 202 FSKILLKLQPRKKLN-GSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTT--------FPFSR 272 (517)
Q Consensus 202 ~~~i~~~l~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~--------~~~~~ 272 (517)
-.. +.+..... .+.. ...+ ..|. ....-+||||||+.|....|..|..+++... .....
T Consensus 444 ~~~----lfg~~~~~~~g~~-~~~~-g~le------~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~ 511 (686)
T PRK15429 444 ESD----LFGHERGAFTGAS-AQRI-GRFE------LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTD 511 (686)
T ss_pred hhh----hcCcccccccccc-cchh-hHHH------hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccce
Confidence 222 22222111 1111 1111 1232 1123589999999998888877777775421 11245
Q ss_pred EEEEEEECCCCcchh-----hcccccccCCCceEEEeCCCCH--HHHHHHHHHHHhhh------ccCCCChhHHHHHHHH
Q 010136 273 FILIGIANAIDLADR-----FLPRLQSMNCKPLVVTFRAYSK--DQIIRILQERLMEL------SYIVFQPQALELCARK 339 (517)
Q Consensus 273 v~lI~ian~~~~~~~-----l~~~l~sr~~~~~~i~f~p~~~--~e~~~IL~~rl~~~------~~~~~~~~ai~~ia~~ 339 (517)
+-+|++++. ++... +...+..+ +....|.+||+.. +++-.++...+..+ ....|++++++.+..+
T Consensus 512 ~RiI~~t~~-~l~~~~~~~~f~~~L~~~-l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y 589 (686)
T PRK15429 512 VRLIAATNR-DLKKMVADREFRSDLYYR-LNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNM 589 (686)
T ss_pred EEEEEeCCC-CHHHHHHcCcccHHHHhc-cCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC
Confidence 677876653 22221 22233334 4556899999964 66766666555422 1235899999998774
Q ss_pred HHHHhCCHHHHHHHHHHHHHHH
Q 010136 340 VAAASGDMRKALSVCRSAIEIL 361 (517)
Q Consensus 340 ~~~~~Gd~R~al~ll~~A~~~a 361 (517)
...|++|..-+++++|+..+
T Consensus 590 --~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 590 --EWPGNVRELENVIERAVLLT 609 (686)
T ss_pred --CCCCcHHHHHHHHHHHHHhC
Confidence 57899999999999888543
No 212
>PRK15115 response regulator GlrR; Provisional
Probab=98.86 E-value=2.6e-08 Score=104.81 Aligned_cols=211 Identities=16% Similarity=0.186 Sum_probs=127.7
Q ss_pred CCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHH
Q 010136 125 TIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSK 204 (517)
Q Consensus 125 ~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~ 204 (517)
.++|....+..+.+.+.... .....++|+|++|||||++++.+...... ....++.+||..+.. ..+
T Consensus 135 ~lig~s~~~~~~~~~~~~~a--~~~~~vli~Ge~GtGk~~lA~~ih~~s~r-------~~~~f~~i~c~~~~~-~~~--- 201 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVA--QSDVSVLINGQSGTGKEILAQAIHNASPR-------ASKPFIAINCGALPE-QLL--- 201 (444)
T ss_pred cccccCHHHHHHHHHHHhhc--cCCCeEEEEcCCcchHHHHHHHHHHhcCC-------CCCCeEEEeCCCCCH-HHH---
Confidence 46777777666666555443 24567999999999999999998664321 113699999998733 222
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCC--------CCCcEEEE
Q 010136 205 ILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF--------PFSRFILI 276 (517)
Q Consensus 205 i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~--------~~~~v~lI 276 (517)
...+.+......... ...-...+. .....+|||||||.|....|..|..+++.... ....+-+|
T Consensus 202 -~~~lfg~~~~~~~~~-~~~~~g~~~------~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii 273 (444)
T PRK15115 202 -ESELFGHARGAFTGA-VSNREGLFQ------AAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRII 273 (444)
T ss_pred -HHHhcCCCcCCCCCC-ccCCCCcEE------ECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEE
Confidence 222222221111000 000000121 12234899999999998888888777754221 12356777
Q ss_pred EEECCCCcch-----hhcccccccCCCceEEEeCCCCH--HHHHHHHHHHHhhh------ccCCCChhHHHHHHHHHHHH
Q 010136 277 GIANAIDLAD-----RFLPRLQSMNCKPLVVTFRAYSK--DQIIRILQERLMEL------SYIVFQPQALELCARKVAAA 343 (517)
Q Consensus 277 ~ian~~~~~~-----~l~~~l~sr~~~~~~i~f~p~~~--~e~~~IL~~rl~~~------~~~~~~~~ai~~ia~~~~~~ 343 (517)
++++. ++.. .+.+.+..+ +....|.+||+.. +++..++...+..+ ....+++++++.+..+ ..
T Consensus 274 ~~~~~-~l~~~~~~~~f~~~l~~~-l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~--~W 349 (444)
T PRK15115 274 SATHR-DLPKAMARGEFREDLYYR-LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTA--SW 349 (444)
T ss_pred EeCCC-CHHHHHHcCCccHHHHHh-hceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC--CC
Confidence 76653 3222 222334444 4556888888854 56666655555422 1135899999999874 46
Q ss_pred hCCHHHHHHHHHHHHHH
Q 010136 344 SGDMRKALSVCRSAIEI 360 (517)
Q Consensus 344 ~Gd~R~al~ll~~A~~~ 360 (517)
.|++|...+++++|+..
T Consensus 350 pgNvreL~~~i~~~~~~ 366 (444)
T PRK15115 350 PGNVRQLVNVIEQCVAL 366 (444)
T ss_pred CChHHHHHHHHHHHHHh
Confidence 89999999999998754
No 213
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.86 E-value=1.8e-08 Score=103.15 Aligned_cols=217 Identities=16% Similarity=0.157 Sum_probs=140.7
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHH
Q 010136 122 APSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEI 201 (517)
Q Consensus 122 ~p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i 201 (517)
....++|+...++++...+..... ..-+++|+|++||||-.+|+++-+.-.+ .+ -+||.|||..+. ..+
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~--s~a~VLI~GESGtGKElvAr~IH~~S~R----~~---~PFVavNcaAip--~~l 207 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAP--SDASVLITGESGTGKELVARAIHQASPR----AK---GPFIAVNCAAIP--ENL 207 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhC--CCCCEEEECCCCCcHHHHHHHHHhhCcc----cC---CCceeeecccCC--HHH
Confidence 345799999999999999988654 5678999999999999999997544322 22 269999999873 332
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCC--------CCCCcE
Q 010136 202 FSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTT--------FPFSRF 273 (517)
Q Consensus 202 ~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~--------~~~~~v 273 (517)
+-++|.++.++...+.... -.-.|+ ....-.||||||..|...-|.-|...++... .-...|
T Consensus 208 ---~ESELFGhekGAFTGA~~~-r~G~fE------~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdv 277 (464)
T COG2204 208 ---LESELFGHEKGAFTGAITR-RIGRFE------QANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDV 277 (464)
T ss_pred ---HHHHhhcccccCcCCcccc-cCccee------EcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceee
Confidence 2334555444322221000 011232 1223589999999998777765555554421 123567
Q ss_pred EEEEEECCCCcchh-----hcccccccCCCceEEEeCCCC--HHHHHHHHHHHHh------hhccCCCChhHHHHHHHHH
Q 010136 274 ILIGIANAIDLADR-----FLPRLQSMNCKPLVVTFRAYS--KDQIIRILQERLM------ELSYIVFQPQALELCARKV 340 (517)
Q Consensus 274 ~lI~ian~~~~~~~-----l~~~l~sr~~~~~~i~f~p~~--~~e~~~IL~~rl~------~~~~~~~~~~ai~~ia~~~ 340 (517)
-||++||. |+.+. +..-|.-| +..-.|.+||+- .+++--++.+-+. +.....|++++++.+..+
T Consensus 278 RiIaaT~~-dL~~~v~~G~FReDLyyR-LnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y- 354 (464)
T COG2204 278 RIIAATNR-DLEEEVAAGRFREDLYYR-LNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAY- 354 (464)
T ss_pred EEEeecCc-CHHHHHHcCCcHHHHHhh-hccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC-
Confidence 78887763 33322 22333334 444578888884 4666555555443 234578899999988763
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHH
Q 010136 341 AAASGDMRKALSVCRSAIEILEA 363 (517)
Q Consensus 341 ~~~~Gd~R~al~ll~~A~~~a~~ 363 (517)
...|++|..-+++.+++-++..
T Consensus 355 -~WPGNVREL~N~ver~~il~~~ 376 (464)
T COG2204 355 -DWPGNVRELENVVERAVILSEG 376 (464)
T ss_pred -CCChHHHHHHHHHHHHHhcCCc
Confidence 5789999999999998866554
No 214
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.84 E-value=1.5e-07 Score=92.47 Aligned_cols=175 Identities=9% Similarity=0.068 Sum_probs=113.8
Q ss_pred HHHHHHHhhccCCCCeEE-EEcCCCCcHHHHHHHHHHHHHHHHH---hcCCCCceEEEEe--CCCCCCHHHHHHHHHHHh
Q 010136 136 VLEFCKKNLEEEKAGSLY-VCGCPGTGKSLSMEKVQHYLVDWAK---EAGLQQPEVFSIN--CTSLTNTSEIFSKILLKL 209 (517)
Q Consensus 136 l~~~L~~~l~~~~~~~ll-i~G~pGtGKT~l~~~v~~~l~~~~~---~~~~~~~~~v~vn--~~~~~s~~~i~~~i~~~l 209 (517)
+...+...+..+...++| |+|+.|.||+.+++.+++.+.+... ..+.....+.+++ +.. .+
T Consensus 4 ~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~-i~------------ 70 (299)
T PRK07132 4 WIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKD-LS------------ 70 (299)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCc-CC------------
Confidence 556677777766666666 9999999999999999998854221 0011111334443 211 11
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhh-hcc-CCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCCCcchh
Q 010136 210 QPRKKLNGSTSPLQYLQNLYSQK-LHS-SVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAIDLADR 287 (517)
Q Consensus 210 ~~~~~~~~~~~~~~~l~~~~~~~-~~~-~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~ 287 (517)
.+.++.+.... ... ..+...|++||++|.+....++.|...++. +...+++|.+++. ++.
T Consensus 71 ------------vd~Ir~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEE---Pp~~t~~il~~~~---~~k 132 (299)
T PRK07132 71 ------------KSEFLSAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEE---PPKDTYFLLTTKN---INK 132 (299)
T ss_pred ------------HHHHHHHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhC---CCCCeEEEEEeCC---hHh
Confidence 22233332221 111 124678999999999977667777777766 3456677776763 478
Q ss_pred hcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHH
Q 010136 288 FLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCR 355 (517)
Q Consensus 288 l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~ 355 (517)
+.+.++|| | +.+.|.|++.+++.+.|..+ + ++++....+| ..+|++.+|+.++.
T Consensus 133 ll~TI~SR-c--~~~~f~~l~~~~l~~~l~~~--~-----~~~~~a~~~a----~~~~~~~~a~~~~~ 186 (299)
T PRK07132 133 VLPTIVSR-C--QVFNVKEPDQQKILAKLLSK--N-----KEKEYNWFYA----YIFSNFEQAEKYIN 186 (299)
T ss_pred ChHHHHhC-e--EEEECCCCCHHHHHHHHHHc--C-----CChhHHHHHH----HHcCCHHHHHHHHh
Confidence 88999999 7 79999999999999888754 1 3444444444 35667888887753
No 215
>PHA02244 ATPase-like protein
Probab=98.84 E-value=4.9e-08 Score=97.04 Aligned_cols=150 Identities=14% Similarity=0.123 Sum_probs=93.3
Q ss_pred CCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHH
Q 010136 125 TIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSK 204 (517)
Q Consensus 125 ~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~ 204 (517)
..++....+......+..++. ...+++|+||||||||+++++++..++ ..++.+|+.. +...
T Consensus 97 ~~ig~sp~~~~~~~ri~r~l~--~~~PVLL~GppGtGKTtLA~aLA~~lg----------~pfv~In~l~--d~~~---- 158 (383)
T PHA02244 97 TKIASNPTFHYETADIAKIVN--ANIPVFLKGGAGSGKNHIAEQIAEALD----------LDFYFMNAIM--DEFE---- 158 (383)
T ss_pred cccCCCHHHHHHHHHHHHHHh--cCCCEEEECCCCCCHHHHHHHHHHHhC----------CCEEEEecCh--HHHh----
Confidence 466777777666666666665 456899999999999999999998753 3578887431 1111
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccC--------CCCCCcEEEE
Q 010136 205 ILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLT--------TFPFSRFILI 276 (517)
Q Consensus 205 i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~--------~~~~~~v~lI 276 (517)
+.+.... .+......+...+ ....+|+|||++.+....+..|..+++.. .....++.+|
T Consensus 159 ----L~G~i~~-~g~~~dgpLl~A~--------~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlI 225 (383)
T PHA02244 159 ----LKGFIDA-NGKFHETPFYEAF--------KKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVI 225 (383)
T ss_pred ----hcccccc-cccccchHHHHHh--------hcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEE
Confidence 1111100 0110001122222 23469999999999877677777776521 1123578999
Q ss_pred EEECCCC------c--chhhcccccccCCCceEEEeCCCC
Q 010136 277 GIANAID------L--ADRFLPRLQSMNCKPLVVTFRAYS 308 (517)
Q Consensus 277 ~ian~~~------~--~~~l~~~l~sr~~~~~~i~f~p~~ 308 (517)
+++|... + ...+.+.+.+| | ..|.|.-++
T Consensus 226 ATsN~~~~G~~~~y~G~k~L~~AllDR-F--v~I~~dyp~ 262 (383)
T PHA02244 226 SAGNTLGKGADHIYVARNKIDGATLDR-F--APIEFDYDE 262 (383)
T ss_pred EeeCCCccCcccccCCCcccCHHHHhh-c--EEeeCCCCc
Confidence 9999742 1 24567888888 6 467776655
No 216
>PF05729 NACHT: NACHT domain
Probab=98.83 E-value=4.6e-08 Score=87.92 Aligned_cols=152 Identities=22% Similarity=0.351 Sum_probs=87.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHH---HHHHHHHHHhCCCCCCCCCCCHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTS---EIFSKILLKLQPRKKLNGSTSPLQYLQN 227 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~---~i~~~i~~~l~~~~~~~~~~~~~~~l~~ 227 (517)
.++|+|+||+|||++++.++..+......... ...++++++....... .+...|...+.... ......+..
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~~~~~ 75 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSK-FPYPFFFSLRDISDSNNSRSLADLLFDQLPESI-----APIEELLQE 75 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCccccc-ceEEEEEeehhhhhccccchHHHHHHHhhccch-----hhhHHHHHH
Confidence 57899999999999999999888754321110 1235566666554432 34444444442211 111112222
Q ss_pred HHHhhhccCCCceEEEEEeCcchhcccCch--------HHHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCc
Q 010136 228 LYSQKLHSSVMKMMLIIADELDYLITRDRA--------VLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKP 299 (517)
Q Consensus 228 ~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~--------~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~ 299 (517)
+.. ....++|+||-+|.+....+. .|..++.....++.++++. ++.....+ +...+. ..
T Consensus 76 ~~~------~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit--~r~~~~~~-~~~~~~----~~ 142 (166)
T PF05729_consen 76 LLE------KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIIT--SRPRAFPD-LRRRLK----QA 142 (166)
T ss_pred HHH------cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEE--EcCChHHH-HHHhcC----CC
Confidence 332 456789999999999875332 3444443322344444443 44332222 222222 22
Q ss_pred eEEEeCCCCHHHHHHHHHHHHh
Q 010136 300 LVVTFRAYSKDQIIRILQERLM 321 (517)
Q Consensus 300 ~~i~f~p~~~~e~~~IL~~rl~ 321 (517)
..+.+.+++.+++.++++..+.
T Consensus 143 ~~~~l~~~~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 143 QILELEPFSEEDIKQYLRKYFS 164 (166)
T ss_pred cEEEECCCCHHHHHHHHHHHhh
Confidence 5899999999999999987764
No 217
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=4.1e-07 Score=87.65 Aligned_cols=117 Identities=22% Similarity=0.305 Sum_probs=77.7
Q ss_pred ceEEEEEeCcchhcccC------------chHHHHHhccCC-------CCCCcEEEEEEECCCC--cchhhcccccccCC
Q 010136 239 KMMLIIADELDYLITRD------------RAVLHDLFMLTT-------FPFSRFILIGIANAID--LADRFLPRLQSMNC 297 (517)
Q Consensus 239 ~~~vI~iDEiD~L~~~~------------~~~L~~l~~~~~-------~~~~~v~lI~ian~~~--~~~~l~~~l~sr~~ 297 (517)
..-||||||||.++.+. |..|.-|++-.+ ....++.+|+ +.... -|..|.|.|+.| |
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIa-sGAFh~sKPSDLiPELQGR-f 327 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIA-SGAFHVAKPSDLIPELQGR-F 327 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEe-cCceecCChhhcChhhcCC-C
Confidence 34699999999998653 223444444322 1234677776 44432 466788999999 5
Q ss_pred CceEEEeCCCCHHHHHHHHHHHH-------hhh-----ccCCCChhHHHHHHHHHHHHhC-----CHHHHHHHHHHHH
Q 010136 298 KPLVVTFRAYSKDQIIRILQERL-------MEL-----SYIVFQPQALELCARKVAAASG-----DMRKALSVCRSAI 358 (517)
Q Consensus 298 ~~~~i~f~p~~~~e~~~IL~~rl-------~~~-----~~~~~~~~ai~~ia~~~~~~~G-----d~R~al~ll~~A~ 358 (517)
|-++.+.+++.++...||..-- ..+ -.-.|++++|+.+|+....... .+|+...++.+..
T Consensus 328 -PIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlL 404 (444)
T COG1220 328 -PIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLL 404 (444)
T ss_pred -ceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHH
Confidence 6699999999999999986411 111 0247899999999987655443 3666666655544
No 218
>PF13173 AAA_14: AAA domain
Probab=98.82 E-value=1.9e-08 Score=86.70 Aligned_cols=126 Identities=17% Similarity=0.191 Sum_probs=76.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNL 228 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~ 228 (517)
.+.++|+||+|+|||++++.+++.+.. .-.++|+|+.......... .+ +.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~--------~~~~~yi~~~~~~~~~~~~-------------------~~-~~~~ 53 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLP--------PENILYINFDDPRDRRLAD-------------------PD-LLEY 53 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcc--------cccceeeccCCHHHHHHhh-------------------hh-hHHH
Confidence 357899999999999999999988761 0258999987743211100 00 1222
Q ss_pred HHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCC
Q 010136 229 YSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYS 308 (517)
Q Consensus 229 ~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~ 308 (517)
+.+. ...+..+||||||+.+.. -...+..+.+.. ++.++++.| ++...+.......+..| . ..+.+.|++
T Consensus 54 ~~~~---~~~~~~~i~iDEiq~~~~-~~~~lk~l~d~~--~~~~ii~tg-S~~~~l~~~~~~~l~gr-~--~~~~l~Pls 123 (128)
T PF13173_consen 54 FLEL---IKPGKKYIFIDEIQYLPD-WEDALKFLVDNG--PNIKIILTG-SSSSLLSKDIAESLAGR-V--IEIELYPLS 123 (128)
T ss_pred HHHh---hccCCcEEEEehhhhhcc-HHHHHHHHHHhc--cCceEEEEc-cchHHHhhcccccCCCe-E--EEEEECCCC
Confidence 2211 012567899999999842 345566666532 344565555 33333333344555555 4 578999999
Q ss_pred HHHH
Q 010136 309 KDQI 312 (517)
Q Consensus 309 ~~e~ 312 (517)
..|.
T Consensus 124 f~E~ 127 (128)
T PF13173_consen 124 FREF 127 (128)
T ss_pred HHHh
Confidence 8875
No 219
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.81 E-value=2e-08 Score=102.90 Aligned_cols=223 Identities=18% Similarity=0.184 Sum_probs=137.6
Q ss_pred cCcCCCCCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCC
Q 010136 117 LHVSTAPSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLT 196 (517)
Q Consensus 117 l~~~~~p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~ 196 (517)
+...|..++++|...++.++......... ...+++|.|.+||||-.+|+++-+.-.+. .-+|+.|||..+
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~A~--tdstVLi~GESGTGKElfA~~IH~~S~R~-------~~PFIaiNCaAi- 307 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRIAK--TDSTVLILGESGTGKELFARAIHNLSPRA-------NGPFIAINCAAI- 307 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhhcC--CCCcEEEecCCCccHHHHHHHHHhcCccc-------CCCeEEEecccC-
Confidence 44567788999999999998888777543 56789999999999999999986543332 136999999987
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhcc--------CCC
Q 010136 197 NTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFML--------TTF 268 (517)
Q Consensus 197 s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~--------~~~ 268 (517)
|..++ -++|.+...+...+....-=.-+|+ ....--||||||..|...=|.-|...++. ...
T Consensus 308 -Pe~Ll---ESELFGye~GAFTGA~~~GK~GlfE------~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~ 377 (560)
T COG3829 308 -PETLL---ESELFGYEKGAFTGASKGGKPGLFE------LANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKP 377 (560)
T ss_pred -CHHHH---HHHHhCcCCccccccccCCCCccee------eccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCc
Confidence 44442 3344444333221110000001232 11224789999999976656555554443 122
Q ss_pred CCCcEEEEEEECCCCcchhh-ccccccc---CCCceEEEeCCCC--HHHHHHHHHHHHhhh------ccCCCChhHHHHH
Q 010136 269 PFSRFILIGIANAIDLADRF-LPRLQSM---NCKPLVVTFRAYS--KDQIIRILQERLMEL------SYIVFQPQALELC 336 (517)
Q Consensus 269 ~~~~v~lI~ian~~~~~~~l-~~~l~sr---~~~~~~i~f~p~~--~~e~~~IL~~rl~~~------~~~~~~~~ai~~i 336 (517)
....|-+|++||.. +.+-+ ..+++.- ++..-.|.+||+- .+++..+..+-+..+ ....++++++..+
T Consensus 378 ~~vDVRIIAATN~n-L~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L 456 (560)
T COG3829 378 IPVDVRIIAATNRN-LEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALL 456 (560)
T ss_pred eeeEEEEEeccCcC-HHHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHH
Confidence 34678899988842 22211 1222221 1333466777773 355555544444321 2245889999988
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHH
Q 010136 337 ARKVAAASGDMRKALSVCRSAIEILE 362 (517)
Q Consensus 337 a~~~~~~~Gd~R~al~ll~~A~~~a~ 362 (517)
.++ ...|++|..-+++.+++.++.
T Consensus 457 ~~y--~WPGNVRELeNviER~v~~~~ 480 (560)
T COG3829 457 LRY--DWPGNVRELENVIERAVNLVE 480 (560)
T ss_pred HhC--CCCchHHHHHHHHHHHHhccC
Confidence 774 578999998888888876443
No 220
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=5e-08 Score=96.59 Aligned_cols=187 Identities=20% Similarity=0.283 Sum_probs=117.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNL 228 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~ 228 (517)
-.++++.||.|+|||.+++.+++-+. ++|+-++|..++.. ++.|...+..|+++
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ld----------VPfaIcDcTtLTQA----------------GYVGeDVEsvi~KL 279 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLD----------VPFAICDCTTLTQA----------------GYVGEDVESVIQKL 279 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhC----------CCeEEecccchhhc----------------ccccccHHHHHHHH
Confidence 45899999999999999999998874 67999999987532 22245545556666
Q ss_pred HHhh-hccCCCceEEEEEeCcchhcccC--------------chHHHHHhccC-----CC-------------CCCcEEE
Q 010136 229 YSQK-LHSSVMKMMLIIADELDYLITRD--------------RAVLHDLFMLT-----TF-------------PFSRFIL 275 (517)
Q Consensus 229 ~~~~-~~~~~~~~~vI~iDEiD~L~~~~--------------~~~L~~l~~~~-----~~-------------~~~~v~l 275 (517)
+... ..-.....-|+||||+|.+.... |..|..|++-. .. ...+|.+
T Consensus 280 l~~A~~nVekAQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILF 359 (564)
T KOG0745|consen 280 LQEAEYNVEKAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILF 359 (564)
T ss_pred HHHccCCHHHHhcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEE
Confidence 6531 11112344699999999998431 45677776541 00 1234555
Q ss_pred EEEEC--CCC-----------------------------------------cch----------hhcccccccCCCceEE
Q 010136 276 IGIAN--AID-----------------------------------------LAD----------RFLPRLQSMNCKPLVV 302 (517)
Q Consensus 276 I~ian--~~~-----------------------------------------~~~----------~l~~~l~sr~~~~~~i 302 (517)
|+-.- .+| +.+ -+.|.+.-| | |..+
T Consensus 360 iasGAF~~Ldk~I~rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGR-f-PVlV 437 (564)
T KOG0745|consen 360 IASGAFVGLDKIISRRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGR-F-PVLV 437 (564)
T ss_pred EecccccchHHHHHHhhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcc-c-ceEe
Confidence 54111 000 000 012455555 4 6688
Q ss_pred EeCCCCHHHHHHHHHHHH-------hhh-c----cCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 010136 303 TFRAYSKDQIIRILQERL-------MEL-S----YIVFQPQALELCARKVAAASGDMRKALSVCRSAIEILEA 363 (517)
Q Consensus 303 ~f~p~~~~e~~~IL~~rl-------~~~-~----~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~~a~~ 363 (517)
.|.+++.+++..||..=- +.+ . .-.|+++|++.||+..-...-.+|-.-.++..++.-|+-
T Consensus 438 plh~L~~~~Lv~VLtEPknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Lleamf 510 (564)
T KOG0745|consen 438 PLHSLDEDQLVRVLTEPKNALGKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMF 510 (564)
T ss_pred eccccCHHHHHHHHhcchhhHHHHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhcc
Confidence 899999999999987421 111 0 236789999999997655555677655666666655443
No 221
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=1.1e-07 Score=92.57 Aligned_cols=189 Identities=16% Similarity=0.152 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHhhccCCCC-eEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhC
Q 010136 132 EQKKVLEFCKKNLEEEKAG-SLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQ 210 (517)
Q Consensus 132 e~~~l~~~L~~~l~~~~~~-~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~ 210 (517)
....+...|...+..++.. ..+|+|+ +||+++++.+++.+.+.....+. .|....+...+ ...-.
T Consensus 6 ~q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~--------~Cg~C~~C~~i----~~~~H 71 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVL--------PCGHCRSCRLI----EQGEF 71 (290)
T ss_pred HHHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCC--------CCCCCHHHHHH----hcCCC
Confidence 3445666677777666644 5678895 78999999999888653211000 11111111111 00000
Q ss_pred CCC---CCCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCCCcch
Q 010136 211 PRK---KLNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAIDLAD 286 (517)
Q Consensus 211 ~~~---~~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~ 286 (517)
... .+....-..+.++.+.... .....+...|+|||++|.|.....+.|...++.+ ..+.++|.+++. ++
T Consensus 72 PD~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEP---p~~t~~iL~t~~---~~ 145 (290)
T PRK07276 72 SDVTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEP---QSEIYIFLLTND---EN 145 (290)
T ss_pred CCeeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCC---CCCeEEEEEECC---hh
Confidence 000 0000111144455444321 1223455679999999999887788888888764 456777777874 77
Q ss_pred hhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHH
Q 010136 287 RFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCR 355 (517)
Q Consensus 287 ~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~ 355 (517)
.+.|.++|| | +.|.|++ +.+++.++|... .++.+..+.+ +...|++..|+.++.
T Consensus 146 ~lLpTI~SR-c--q~i~f~~-~~~~~~~~L~~~-------g~~~~~a~~l----a~~~~s~~~A~~l~~ 199 (290)
T PRK07276 146 KVLPTIKSR-T--QIFHFPK-NEAYLIQLLEQK-------GLLKTQAELL----AKLAQSTSEAEKLAQ 199 (290)
T ss_pred hCchHHHHc-c--eeeeCCC-cHHHHHHHHHHc-------CCChHHHHHH----HHHCCCHHHHHHHhC
Confidence 889999999 7 7999977 788888777632 2333333333 346778988888874
No 222
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.80 E-value=4.1e-08 Score=99.32 Aligned_cols=216 Identities=15% Similarity=0.169 Sum_probs=134.3
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHH
Q 010136 122 APSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEI 201 (517)
Q Consensus 122 ~p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i 201 (517)
-...++|+...+.++.+.+.-... ....++|.|..||||-.+|++|-+.-.+ .+ -.+|++||..+ +..+
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~--Sd~tVLi~GETGtGKElvAraIH~~S~R----~~---kPfV~~NCAAl--PesL 289 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAK--SDSTVLIRGETGTGKELVARAIHQLSPR----RD---KPFVKLNCAAL--PESL 289 (550)
T ss_pred ccccceecCHHHHHHHHHHHHHhc--CCCeEEEecCCCccHHHHHHHHHhhCcc----cC---CCceeeecccc--chHH
Confidence 345899999999999999887654 5678999999999999999997544322 11 26999999987 3333
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccC--------CCCCCcE
Q 010136 202 FSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLT--------TFPFSRF 273 (517)
Q Consensus 202 ~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~--------~~~~~~v 273 (517)
+-++|.++.++...+. ...=.-.|+ + .. .--||||||-.|.-.-|.-|...+... ..-...|
T Consensus 290 ---lESELFGHeKGAFTGA-~~~r~GrFE---l-Ad--GGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDV 359 (550)
T COG3604 290 ---LESELFGHEKGAFTGA-INTRRGRFE---L-AD--GGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDV 359 (550)
T ss_pred ---HHHHHhcccccccccc-hhccCccee---e-cC--CCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEE
Confidence 2344555544432222 000011122 1 12 246899999999776665444444331 1123568
Q ss_pred EEEEEECCCCcchhh-cccccccC---CCceEEEeCCCCH--HH---HHHHHHHHHh---hhccCCCChhHHHHHHHHHH
Q 010136 274 ILIGIANAIDLADRF-LPRLQSMN---CKPLVVTFRAYSK--DQ---IIRILQERLM---ELSYIVFQPQALELCARKVA 341 (517)
Q Consensus 274 ~lI~ian~~~~~~~l-~~~l~sr~---~~~~~i~f~p~~~--~e---~~~IL~~rl~---~~~~~~~~~~ai~~ia~~~~ 341 (517)
-||++||. |+.+.. +.+++.-+ +..-.|.+||+-. ++ +...+..+.. +.....+++++++.+..+
T Consensus 360 RiIAATNR-DL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y-- 436 (550)
T COG3604 360 RVIAATNR-DLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSY-- 436 (550)
T ss_pred EEEeccch-hHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcC--
Confidence 89998884 222221 22222221 2233566777632 33 3333333332 233468899999998774
Q ss_pred HHhCCHHHHHHHHHHHHHHH
Q 010136 342 AASGDMRKALSVCRSAIEIL 361 (517)
Q Consensus 342 ~~~Gd~R~al~ll~~A~~~a 361 (517)
...|++|..-+++.+|+-+|
T Consensus 437 ~wPGNVRELen~veRavlla 456 (550)
T COG3604 437 EWPGNVRELENVVERAVLLA 456 (550)
T ss_pred CCCCcHHHHHHHHHHHHHHh
Confidence 47899999999999999877
No 223
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.79 E-value=8.9e-09 Score=92.81 Aligned_cols=135 Identities=17% Similarity=0.161 Sum_probs=81.6
Q ss_pred CCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHH
Q 010136 126 IVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKI 205 (517)
Q Consensus 126 l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i 205 (517)
++|.+..+.++.+.++.... .+.+++|+|++||||+.+|+++-+.... ..-+|+.|||..+. ...+-..+
T Consensus 1 liG~s~~m~~~~~~~~~~a~--~~~pVlI~GE~GtGK~~lA~~IH~~s~r-------~~~pfi~vnc~~~~-~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS--SDLPVLITGETGTGKELLARAIHNNSPR-------KNGPFISVNCAALP-EELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT--STS-EEEECSTTSSHHHHHHHHHHCSTT-------TTS-EEEEETTTS--HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhC--CCCCEEEEcCCCCcHHHHHHHHHHhhhc-------ccCCeEEEehhhhh-cchhhhhh
Confidence 57888888999999888764 4589999999999999999998653221 12369999999873 33333333
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCC--------CCCCcEEEEE
Q 010136 206 LLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTT--------FPFSRFILIG 277 (517)
Q Consensus 206 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~--------~~~~~v~lI~ 277 (517)
+..-.+......... .-+|.+ ...-+||||||+.|....|..|..+++... ....++-+|+
T Consensus 71 FG~~~~~~~~~~~~~-----~G~l~~------A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~ 139 (168)
T PF00158_consen 71 FGHEKGAFTGARSDK-----KGLLEQ------ANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIA 139 (168)
T ss_dssp HEBCSSSSTTTSSEB-----EHHHHH------TTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEE
T ss_pred hcccccccccccccc-----CCceee------ccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEe
Confidence 322211111100000 123331 122489999999999988988888887421 1124788888
Q ss_pred EECC
Q 010136 278 IANA 281 (517)
Q Consensus 278 ian~ 281 (517)
+|+.
T Consensus 140 st~~ 143 (168)
T PF00158_consen 140 STSK 143 (168)
T ss_dssp EESS
T ss_pred ecCc
Confidence 7773
No 224
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.79 E-value=3.8e-08 Score=102.99 Aligned_cols=140 Identities=14% Similarity=0.161 Sum_probs=90.7
Q ss_pred eEEEEEeCcchhcccCchHHHHHhccCCC----------CCCcEEEEEEECCCC---cc---------------hhhccc
Q 010136 240 MMLIIADELDYLITRDRAVLHDLFMLTTF----------PFSRFILIGIANAID---LA---------------DRFLPR 291 (517)
Q Consensus 240 ~~vI~iDEiD~L~~~~~~~L~~l~~~~~~----------~~~~v~lI~ian~~~---~~---------------~~l~~~ 291 (517)
.-+|||||++.+....++.|.+.++.... ...++.+|+++|... +. .++.+.
T Consensus 295 gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~p 374 (506)
T PRK09862 295 NGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGP 374 (506)
T ss_pred CCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHh
Confidence 35999999999987778888887754221 235789999999753 11 246667
Q ss_pred ccccCCCceEEEeCCCCHHHHHH---------HHHHHHh----------h-hc----------cCCCChhHHHHHHHHHH
Q 010136 292 LQSMNCKPLVVTFRAYSKDQIIR---------ILQERLM----------E-LS----------YIVFQPQALELCARKVA 341 (517)
Q Consensus 292 l~sr~~~~~~i~f~p~~~~e~~~---------IL~~rl~----------~-~~----------~~~~~~~ai~~ia~~~~ 341 (517)
+.+| |.. .+.+++.+.+++.. -+..++. + +. ...+++++.+++...+.
T Consensus 375 lLDR-fdL-~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~ 452 (506)
T PRK09862 375 FLDR-FDL-SLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLI 452 (506)
T ss_pred HHhh-ccE-EEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 8888 644 66777664332211 1111110 0 00 12344445454444333
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHh
Q 010136 342 AASGDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNT 409 (517)
Q Consensus 342 ~~~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~ 409 (517)
...-..|....+++-|..+|..++++ .|+.+||.+|+.--
T Consensus 453 ~~~lS~Ra~~rlLrvARTiADL~g~~----------------------------~V~~~hv~eAl~yR 492 (506)
T PRK09862 453 HLGLSIRAWQRLLKVARTIADIDQSD----------------------------IITRQHLQEAVSYR 492 (506)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHcCCC----------------------------CCCHHHHHHHHHhh
Confidence 33447899999999999999998887 89999999999743
No 225
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.79 E-value=9.5e-08 Score=102.09 Aligned_cols=224 Identities=13% Similarity=0.071 Sum_probs=141.8
Q ss_pred HHHHHHHHhhccC-CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHH--HHHhCC
Q 010136 135 KVLEFCKKNLEEE-KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKI--LLKLQP 211 (517)
Q Consensus 135 ~l~~~L~~~l~~~-~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i--~~~l~~ 211 (517)
.+...|.-+.-+. ..++++|.|++||||+++++.+...+... ..| ++-....+...++..+ ...|..
T Consensus 10 ~~~~Al~l~av~p~~~gGv~i~g~~G~~ks~~~r~l~~llp~~--------~p~--r~~p~~~t~~~L~Gg~Dl~~~l~~ 79 (584)
T PRK13406 10 DAALAAALLAVDPAGLGGVVLRARAGPVRDRWLAALRALLPAG--------TPL--RRLPPGIADDRLLGGLDLAATLRA 79 (584)
T ss_pred HHHHHHHHhCcCccccceEEEEcCCCcHHHHHHHHHHHhcCCC--------CCc--ccCCCCCcHHHccCCchHHhHhhc
Confidence 3444433333334 56899999999999999999988776431 122 2222223333332211 111111
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCC----------CCCcEEEEEEECC
Q 010136 212 RKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF----------PFSRFILIGIANA 281 (517)
Q Consensus 212 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~----------~~~~v~lI~ian~ 281 (517)
.... +..... ...+.-||||||+..+..+-++.|.+-++.... ...+|+||++.|.
T Consensus 80 g~~~-------------~~pGll-a~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~ 145 (584)
T PRK13406 80 GRPV-------------AQRGLL-AEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEG 145 (584)
T ss_pred CCcC-------------CCCCce-eeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCC
Confidence 1110 100001 122346999999999988778888777665211 2367899986554
Q ss_pred CCcchhhcccccccCCCceEEEeCCCCHHHHH-------HHHHHHHhhhccCCCChhHHHHHHHHHHHHhC-CHHHHHHH
Q 010136 282 IDLADRFLPRLQSMNCKPLVVTFRAYSKDQII-------RILQERLMELSYIVFQPQALELCARKVAAASG-DMRKALSV 353 (517)
Q Consensus 282 ~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~-------~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~G-d~R~al~l 353 (517)
.++...+.+.+..| |.. .+.+...+..+.. .|+..|- .+....++++.+++++..+....- ..|-.+.+
T Consensus 146 ~~~~~~L~~~lLDR-f~l-~v~v~~~~~~~~~~~~~~~~~I~~AR~-rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~l 222 (584)
T PRK13406 146 AEEDERAPAALADR-LAF-HLDLDGLALRDAREIPIDADDIAAARA-RLPAVGPPPEAIAALCAAAAALGIASLRAPLLA 222 (584)
T ss_pred hhcccCCCHHhHhh-eEE-EEEcCCCChHHhcccCCCHHHHHHHHH-HHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHH
Confidence 44555677788888 654 7777766655432 3333332 223467899999999887665543 78999999
Q ss_pred HHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccCh
Q 010136 354 CRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSP 413 (517)
Q Consensus 354 l~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~ 413 (517)
++-|..+|..+++. .|+.+||.+|+.-+....
T Consensus 223 lraARa~AaL~Gr~----------------------------~V~~~dv~~Aa~lvL~hR 254 (584)
T PRK13406 223 LRAARAAAALAGRT----------------------------AVEEEDLALAARLVLAPR 254 (584)
T ss_pred HHHHHHHHHHcCCC----------------------------CCCHHHHHHHHHHHHHhh
Confidence 99999999999887 899999999988776543
No 226
>PRK08116 hypothetical protein; Validated
Probab=98.78 E-value=1.9e-08 Score=97.87 Aligned_cols=159 Identities=18% Similarity=0.133 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhhcc-CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCC
Q 010136 133 QKKVLEFCKKNLEE-EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQP 211 (517)
Q Consensus 133 ~~~l~~~L~~~l~~-~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~ 211 (517)
+.....++..+... ..+.+++|+|++|||||+++.++++.+... + ..+++++... ++..+...+..
T Consensus 97 ~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~----~---~~v~~~~~~~------ll~~i~~~~~~ 163 (268)
T PRK08116 97 YKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEK----G---VPVIFVNFPQ------LLNRIKSTYKS 163 (268)
T ss_pred HHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHc----C---CeEEEEEHHH------HHHHHHHHHhc
Confidence 33444444443322 223469999999999999999999998652 2 3578887433 34444433321
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcch--hcccCchHHHHHhccCCCCCCcEEEEEEECCC--Ccchh
Q 010136 212 RKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDY--LITRDRAVLHDLFMLTTFPFSRFILIGIANAI--DLADR 287 (517)
Q Consensus 212 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~--L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~--~~~~~ 287 (517)
.. ... ...+.+.+. ..-+|||||+.. .....++.|+.+++.....+.+ +|.+||.. ++...
T Consensus 164 ~~----~~~-~~~~~~~l~--------~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~--~IiTsN~~~~eL~~~ 228 (268)
T PRK08116 164 SG----KED-ENEIIRSLV--------NADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLP--TIVTTNLSLEELKNQ 228 (268)
T ss_pred cc----ccc-HHHHHHHhc--------CCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCC--EEEECCCCHHHHHHH
Confidence 11 111 222222222 235899999954 3333457788888764222222 44457743 23334
Q ss_pred hcccccccCC-CceEEEeCCCCHHHHHHHHHHHHh
Q 010136 288 FLPRLQSMNC-KPLVVTFRAYSKDQIIRILQERLM 321 (517)
Q Consensus 288 l~~~l~sr~~-~~~~i~f~p~~~~e~~~IL~~rl~ 321 (517)
++.++.+|.+ ....|.|...+. ...+.+.+++
T Consensus 229 ~~~ri~sRl~e~~~~v~~~g~d~--R~~~~~ek~~ 261 (268)
T PRK08116 229 YGKRIYDRILEMCTPVENEGKSY--RKEIAKEKLQ 261 (268)
T ss_pred HhHHHHHHHHHcCEEEEeeCcCh--hHHHHHHHHH
Confidence 5677777721 123567765543 4445554443
No 227
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.77 E-value=8.6e-06 Score=82.23 Aligned_cols=174 Identities=13% Similarity=0.172 Sum_probs=114.2
Q ss_pred cHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHH-HHHHHHHHHHHHhcCCCCceEEEEeCCCCC---CHHHHHHH
Q 010136 129 REDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSM-EKVQHYLVDWAKEAGLQQPEVFSINCTSLT---NTSEIFSK 204 (517)
Q Consensus 129 Re~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~-~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~---s~~~i~~~ 204 (517)
|.+.+++|..||... ....++|.||.|+||+.++ ..+++.- -.+++|+|..+. +...+...
T Consensus 1 R~e~~~~L~~wL~e~----~~TFIvV~GPrGSGK~elV~d~~L~~r-----------~~vL~IDC~~i~~ar~D~~~I~~ 65 (431)
T PF10443_consen 1 RKEAIEQLKSWLNEN----PNTFIVVQGPRGSGKRELVMDHVLKDR-----------KNVLVIDCDQIVKARGDAAFIKN 65 (431)
T ss_pred CchHHHHHHHHHhcC----CCeEEEEECCCCCCccHHHHHHHHhCC-----------CCEEEEEChHhhhccChHHHHHH
Confidence 455677788886653 4568999999999999999 6654431 258999998754 45667777
Q ss_pred HHHHhCCC----------------------CCCCCCCCHHHHHHHHHHh-----------hh---------------ccC
Q 010136 205 ILLKLQPR----------------------KKLNGSTSPLQYLQNLYSQ-----------KL---------------HSS 236 (517)
Q Consensus 205 i~~~l~~~----------------------~~~~~~~~~~~~l~~~~~~-----------~~---------------~~~ 236 (517)
++.+++-. .+...+.+...++.++|.- .. ...
T Consensus 66 lA~qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~h 145 (431)
T PF10443_consen 66 LASQVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAH 145 (431)
T ss_pred HHHhcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhC
Confidence 77777411 0111123345555555542 00 001
Q ss_pred CCceEEEEEeCcchhcccCchHHH-HHhccC----CCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHH
Q 010136 237 VMKMMLIIADELDYLITRDRAVLH-DLFMLT----TFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQ 311 (517)
Q Consensus 237 ~~~~~vI~iDEiD~L~~~~~~~L~-~l~~~~----~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e 311 (517)
.....|||||.+.+-... .+.+| .|.+|. +..-.+|++ +|++..+...|...+-++-| +.|.+...+.+.
T Consensus 146 Pe~~PVVVIdnF~~k~~~-~~~iy~~laeWAa~Lv~~nIAHVIF--lT~dv~~~k~LskaLPn~vf--~tI~L~Das~~~ 220 (431)
T PF10443_consen 146 PERRPVVVIDNFLHKAEE-NDFIYDKLAEWAASLVQNNIAHVIF--LTDDVSYSKPLSKALPNRVF--KTISLSDASPES 220 (431)
T ss_pred CccCCEEEEcchhccCcc-cchHHHHHHHHHHHHHhcCccEEEE--ECCCCchhhhHHHhCCCCce--eEEeecCCCHHH
Confidence 122468999999876554 44444 577883 223344444 47777777777777777745 799999999999
Q ss_pred HHHHHHHHHhh
Q 010136 312 IIRILQERLME 322 (517)
Q Consensus 312 ~~~IL~~rl~~ 322 (517)
-..++..+|..
T Consensus 221 Ak~yV~~~L~~ 231 (431)
T PF10443_consen 221 AKQYVLSQLDE 231 (431)
T ss_pred HHHHHHHHhcc
Confidence 99999999864
No 228
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.76 E-value=8.3e-09 Score=93.28 Aligned_cols=108 Identities=18% Similarity=0.202 Sum_probs=70.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNL 228 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~ 228 (517)
-.++++.||+|||||.+++.+++.+.. + ..-.++.+||..+.........+...++.. .. .
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~-----~-~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~-----~~--------~ 63 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV-----G-SERPLIRIDMSEYSEGDDVESSVSKLLGSP-----PG--------Y 63 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT------S-SCCEEEEEEGGGHCSHHHCSCHCHHHHHHT-----TC--------H
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc-----C-CccchHHHhhhcccccchHHhhhhhhhhcc-----cc--------e
Confidence 358999999999999999999998862 0 113799999999877333111111111000 00 0
Q ss_pred HHhhhccCCCceEEEEEeCcchhcc-----------cCchHHHHHhccCC--------CCCCcEEEEEEECC
Q 010136 229 YSQKLHSSVMKMMLIIADELDYLIT-----------RDRAVLHDLFMLTT--------FPFSRFILIGIANA 281 (517)
Q Consensus 229 ~~~~~~~~~~~~~vI~iDEiD~L~~-----------~~~~~L~~l~~~~~--------~~~~~v~lI~ian~ 281 (517)
.. .....||+|||||.... .-|+.|+.+++-.. ..-.++++|+++|-
T Consensus 64 v~------~~~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~ 129 (171)
T PF07724_consen 64 VG------AEEGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNF 129 (171)
T ss_dssp HH------HHHHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESS
T ss_pred ee------ccchhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccc
Confidence 00 01112999999999988 66788888886521 12368999999983
No 229
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.76 E-value=1.3e-08 Score=99.18 Aligned_cols=164 Identities=15% Similarity=0.169 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhC
Q 010136 131 DEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQ 210 (517)
Q Consensus 131 ~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~ 210 (517)
.+..+...++...+. ...+++|+||+|||||++++.+++.+.. ..+.+..+++...++...+...+-..+.
T Consensus 17 ~dt~r~~~ll~~l~~--~~~pvLl~G~~GtGKT~li~~~l~~l~~-------~~~~~~~~~~s~~Tts~~~q~~ie~~l~ 87 (272)
T PF12775_consen 17 VDTVRYSYLLDLLLS--NGRPVLLVGPSGTGKTSLIQNFLSSLDS-------DKYLVITINFSAQTTSNQLQKIIESKLE 87 (272)
T ss_dssp HHHHHHHHHHHHHHH--CTEEEEEESSTTSSHHHHHHHHHHCSTT-------CCEEEEEEES-TTHHHHHHHHCCCTTEC
T ss_pred HHHHHHHHHHHHHHH--cCCcEEEECCCCCchhHHHHhhhccCCc-------cccceeEeeccCCCCHHHHHHHHhhcEE
Confidence 334445555666665 4678999999999999999998765432 1123566777766554443211111110
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC---c---hHHHHHhccC---CCC------CCcEEE
Q 010136 211 PRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD---R---AVLHDLFMLT---TFP------FSRFIL 275 (517)
Q Consensus 211 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~---~---~~L~~l~~~~---~~~------~~~v~l 275 (517)
...+. .+....++..|+|||+++.-..+. | +.|.++++.. ... -.++.+
T Consensus 88 ----k~~~~------------~~gP~~~k~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~ 151 (272)
T PF12775_consen 88 ----KRRGR------------VYGPPGGKKLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQF 151 (272)
T ss_dssp ----ECTTE------------EEEEESSSEEEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEE
T ss_pred ----cCCCC------------CCCCCCCcEEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEE
Confidence 00000 112235677899999998765442 2 6788877652 111 136788
Q ss_pred EEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhh
Q 010136 276 IGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLME 322 (517)
Q Consensus 276 I~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~ 322 (517)
|++.+...-...+.+|+.+. | ..+.+++++.+++..|....+..
T Consensus 152 vaa~~p~~Gr~~is~R~~r~-f--~i~~~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 152 VAAMNPTGGRNPISPRFLRH-F--NILNIPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp EEEESSTTT--SHHHHHHTT-E--EEEE----TCCHHHHHHHHHHHH
T ss_pred EEecCCCCCCCCCChHHhhh-e--EEEEecCCChHHHHHHHHHHHhh
Confidence 88877532222477888887 6 78999999999999999988763
No 230
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.75 E-value=2e-08 Score=87.09 Aligned_cols=119 Identities=19% Similarity=0.167 Sum_probs=68.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNL 228 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~ 228 (517)
+.+++|+||||||||++++.++..+.... ..++++++............ ........ ........+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~ 70 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-------GGVIYIDGEDILEEVLDQLL-LIIVGGKK---ASGSGELRLRLA 70 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC-------CCEEEECCEEccccCHHHHH-hhhhhccC---CCCCHHHHHHHH
Confidence 46899999999999999999998876421 14788888765443322111 00000000 112223344444
Q ss_pred HHhhhccCCCceEEEEEeCcchhcccCchHHHHH-----hccCCCCCCcEEEEEEECC
Q 010136 229 YSQKLHSSVMKMMLIIADELDYLITRDRAVLHDL-----FMLTTFPFSRFILIGIANA 281 (517)
Q Consensus 229 ~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l-----~~~~~~~~~~v~lI~ian~ 281 (517)
+... ....+.+|+|||++.+.......+... ..........+.+|+++|.
T Consensus 71 ~~~~---~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 71 LALA---RKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred HHHH---HhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 4311 123368999999999987654433221 0111223456778888884
No 231
>PF14629 ORC4_C: Origin recognition complex (ORC) subunit 4 C-terminus
Probab=98.74 E-value=6.7e-07 Score=83.59 Aligned_cols=167 Identities=15% Similarity=0.132 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhh
Q 010136 309 KDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAAS 388 (517)
Q Consensus 309 ~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (517)
..+..+-....++.+ +.+..+..+-+.....+.+++...+.+-.++.....
T Consensus 21 ~~~~~~~WN~~I~~l----~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~v~~l~~------------------------- 71 (203)
T PF14629_consen 21 DPSYVKQWNKSIESL----LKDSNVKRLLRKLYYTSKSIRSLKNSLIPAVSRLSP------------------------- 71 (203)
T ss_pred chHHHHHHHHHHHHH----HcChHHHHHHHHHHhhcCCHHHHHHHHHHHHHhccc-------------------------
Confidence 345555555566543 233355444454556678998777777665522111
Q ss_pred hhhccCccccHHHHHHHHHHhccChhHHHhccCCHHHHHHHHHHHHHHhcCCC-CccHHHHHHHHHHHHHhcCCC-----
Q 010136 389 AFEFFNSQVRVDHMAVALSNTFKSPVVDTIKSLPQHQQILLCSAVKFFRGGKK-DMTVGELNKSYMNICKTSLIP----- 462 (517)
Q Consensus 389 ~~~~~~~~Vt~~~v~~a~~~~~~~~~~~~i~~L~~~~k~iL~al~~l~~~~~~-~~~~~~l~~~y~~~~~~~~~~----- 462 (517)
..+.++..++..+............+.+|+..+..+|.|+.++. .+.. .++|..+|+.|.++++..+..
T Consensus 72 ----~~~~l~~~~~~~~~~~~~~d~~~~~l~~LS~LEL~LLIa~~rl~-~~~~~~~NF~~vy~EY~~~~~~~~~~~~~~~ 146 (203)
T PF14629_consen 72 ----SSPFLTASDFFSANSNQSPDSKLSLLKSLSVLELCLLIAAARLI-KGYEETFNFEMVYDEYKKFAKSYNSSSAIVG 146 (203)
T ss_pred ----cCCCCCHHHHHHHHHhhCCCchhhHhccCCHHHHHHHHHHHHHH-hccCCCccHHHHHHHHHHHHHhhcccccccc
Confidence 11268888999888888888778889999999999999999999 5444 899999999999999987655
Q ss_pred ---CCChHHHHHHHHHHhhcCceee-c------cCCceeEEEeecCHHHHHHHHhCC
Q 010136 463 ---PVGTLEFFSMCRVLHDQGVLKV-G------RDDKLKRVTLKADESDITFALQGV 509 (517)
Q Consensus 463 ---~~~~~~~~~~~~~L~~~glI~~-~------~~~~~~~~~l~~~~~~i~~~l~~~ 509 (517)
..+...+...+++|.++|||.- . -...++.++|.++.++|..+++++
T Consensus 147 ~~~~~~k~v~~~a~E~L~~l~Ll~~~~~~~~~~~~~e~r~~~l~it~~el~~~v~~~ 203 (203)
T PF14629_consen 147 TIKVWSKPVALKAWEHLLSLELLKPNYDGSSNNVQKEFRMVQLDITLEELREAVKKH 203 (203)
T ss_pred ccccCCHHHHHHHHHHHHHCCCceecccCCCCccCccceEEEEeCCHHHHHHHHhcC
Confidence 6678889999999999999987 2 234788999999999999999763
No 232
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=1.1e-07 Score=95.05 Aligned_cols=149 Identities=17% Similarity=0.238 Sum_probs=94.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcC---------------CCCceEEEEeCCCCCCHHHHHHHHHHHhCCC
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAG---------------LQQPEVFSINCTSLTNTSEIFSKILLKLQPR 212 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~---------------~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~ 212 (517)
-+..++|+||+|+|||++++.+++.+.+.....+ ..+..+++++...... .
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~--------------~ 85 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEP--------------E 85 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccc--------------c
Confidence 4556889999999999999999998864221000 0112344444321000 0
Q ss_pred CCCCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCCCcchhhccc
Q 010136 213 KKLNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAIDLADRFLPR 291 (517)
Q Consensus 213 ~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~ 291 (517)
.......-..+.++.+.... ......+..|++||+++.|....++.|..+++.+. ....+|.+++. ++.+.+.
T Consensus 86 ~g~~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~---~~~~~Ilvth~---~~~ll~t 159 (325)
T PRK08699 86 NGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPP---PQVVFLLVSHA---ADKVLPT 159 (325)
T ss_pred ccccCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCc---CCCEEEEEeCC---hHhChHH
Confidence 00000001145555544431 12223556788999999998888888888887653 23556666774 5567888
Q ss_pred ccccCCCceEEEeCCCCHHHHHHHHHHH
Q 010136 292 LQSMNCKPLVVTFRAYSKDQIIRILQER 319 (517)
Q Consensus 292 l~sr~~~~~~i~f~p~~~~e~~~IL~~r 319 (517)
+.|| | +.+.|+|++.+++.+.|..+
T Consensus 160 i~SR-c--~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 160 IKSR-C--RKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred HHHH-h--hhhcCCCCCHHHHHHHHHhc
Confidence 9999 7 78999999999999988753
No 233
>PRK12377 putative replication protein; Provisional
Probab=98.73 E-value=2.7e-08 Score=95.12 Aligned_cols=143 Identities=15% Similarity=0.200 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCC
Q 010136 132 EQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQP 211 (517)
Q Consensus 132 e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~ 211 (517)
.+.....+...+.. ...+++|+|+||||||+++.++++.+... + ..+++++... ++..+......
T Consensus 86 a~~~a~~~a~~~~~--~~~~l~l~G~~GtGKThLa~AIa~~l~~~----g---~~v~~i~~~~------l~~~l~~~~~~ 150 (248)
T PRK12377 86 ALSQAKSIADELMT--GCTNFVFSGKPGTGKNHLAAAIGNRLLAK----G---RSVIVVTVPD------VMSRLHESYDN 150 (248)
T ss_pred HHHHHHHHHHHHHh--cCCeEEEECCCCCCHHHHHHHHHHHHHHc----C---CCeEEEEHHH------HHHHHHHHHhc
Confidence 34444445554432 34789999999999999999999998642 2 2466666543 33333333311
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhc--ccCchHHHHHhccCCCCCCcEEEEEEECCC--Ccchh
Q 010136 212 RKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLI--TRDRAVLHDLFMLTTFPFSRFILIGIANAI--DLADR 287 (517)
Q Consensus 212 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~--~~~~~~L~~l~~~~~~~~~~v~lI~ian~~--~~~~~ 287 (517)
+.. .. ..+. .-...-||||||+.... ...++.|+.+++........ +|.+||-. ++.+.
T Consensus 151 ------~~~-~~---~~l~-----~l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~p--tiitSNl~~~~l~~~ 213 (248)
T PRK12377 151 ------GQS-GE---KFLQ-----ELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRS--VGMLTNLNHEAMSTL 213 (248)
T ss_pred ------cch-HH---HHHH-----HhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCC--EEEEcCCCHHHHHHH
Confidence 111 11 2222 12345699999996553 33567888888774322222 34447742 23334
Q ss_pred hcccccccCC--CceEEEeCC
Q 010136 288 FLPRLQSMNC--KPLVVTFRA 306 (517)
Q Consensus 288 l~~~l~sr~~--~~~~i~f~p 306 (517)
+..++.||.. ....|.|.-
T Consensus 214 ~~~ri~dRl~~~~~~~v~~~g 234 (248)
T PRK12377 214 LGERVMDRMTMNGGRWVNFNW 234 (248)
T ss_pred hhHHHHHHHhhCCCeEEEeCC
Confidence 4556666632 124566654
No 234
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.72 E-value=6.9e-07 Score=86.81 Aligned_cols=138 Identities=10% Similarity=0.094 Sum_probs=87.5
Q ss_pred HHHHHhhccCCCC-eEEEEcCCCCcHHHHHHHHHHHHHHHHH--------hcCCCCceEEEEeCCCCCCHHHHHHHHHHH
Q 010136 138 EFCKKNLEEEKAG-SLYVCGCPGTGKSLSMEKVQHYLVDWAK--------EAGLQQPEVFSINCTSLTNTSEIFSKILLK 208 (517)
Q Consensus 138 ~~L~~~l~~~~~~-~lli~G~pGtGKT~l~~~v~~~l~~~~~--------~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~ 208 (517)
..|...+..++.. ..+|+||.|+||+++|..+++.+.+... ....| .+.++......
T Consensus 7 ~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HP--D~~~i~p~~~~------------ 72 (290)
T PRK05917 7 EALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHP--DIHEFSPQGKG------------ 72 (290)
T ss_pred HHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCC--CEEEEecCCCC------------
Confidence 3344445555544 5669999999999999999998864210 01112 22222111000
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCCCcchh
Q 010136 209 LQPRKKLNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAIDLADR 287 (517)
Q Consensus 209 l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~ 287 (517)
..-..+.++.+.... .....+...|++||++|.|....++.|..+++.+ ..++++|.+++. ++.
T Consensus 73 ---------~~I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEP---p~~~~fiL~~~~---~~~ 137 (290)
T PRK05917 73 ---------RLHSIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDP---PQHGVIILTSAK---PQR 137 (290)
T ss_pred ---------CcCcHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcC---CCCeEEEEEeCC---hhh
Confidence 001133333333321 1223456789999999999988888888888774 456777777773 778
Q ss_pred hcccccccCCCceEEEeCCC
Q 010136 288 FLPRLQSMNCKPLVVTFRAY 307 (517)
Q Consensus 288 l~~~l~sr~~~~~~i~f~p~ 307 (517)
+.|.++|| | +.+.|+|.
T Consensus 138 ll~TI~SR-c--q~~~~~~~ 154 (290)
T PRK05917 138 LPPTIRSR-S--LSIHIPME 154 (290)
T ss_pred CcHHHHhc-c--eEEEccch
Confidence 89999999 7 78999886
No 235
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.72 E-value=6.7e-08 Score=101.77 Aligned_cols=213 Identities=15% Similarity=0.131 Sum_probs=133.0
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFS 203 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~ 203 (517)
..++|....++.+...+..... ...+++|+|++||||+++++.+...... ..-.++.+||..+.. ..
T Consensus 139 ~~lig~s~~~~~l~~~i~~~a~--~~~~vli~Ge~GtGK~~lA~~ih~~s~~-------~~~~~v~v~c~~~~~-~~--- 205 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEKIAP--SDITVLLLGESGTGKEVLARALHQLSDR-------KDKRFVAINCAAIPE-NL--- 205 (445)
T ss_pred cceeecCHHHHHHHHHHHHHhC--CCCCEEEECCCCcCHHHHHHHHHHhCCc-------CCCCeEEEECCCCCh-HH---
Confidence 4688888888888888776432 4567999999999999999998654321 113689999998743 22
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCC--------CCCcEEE
Q 010136 204 KILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF--------PFSRFIL 275 (517)
Q Consensus 204 ~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~--------~~~~v~l 275 (517)
+...+.+......... .......+. ....-+||||||+.|....|..|..+++.... ....+-+
T Consensus 206 -~~~~lfg~~~~~~~~~-~~~~~g~~~------~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~ri 277 (445)
T TIGR02915 206 -LESELFGYEKGAFTGA-VKQTLGKIE------YAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRI 277 (445)
T ss_pred -HHHHhcCCCCCCcCCC-ccCCCCcee------ECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEE
Confidence 2233333222111110 000000111 12235799999999988888777777654211 1235677
Q ss_pred EEEECCCCcch-----hhcccccccCCCceEEEeCCCCH--HHHHHHHHHHHhhh------ccCCCChhHHHHHHHHHHH
Q 010136 276 IGIANAIDLAD-----RFLPRLQSMNCKPLVVTFRAYSK--DQIIRILQERLMEL------SYIVFQPQALELCARKVAA 342 (517)
Q Consensus 276 I~ian~~~~~~-----~l~~~l~sr~~~~~~i~f~p~~~--~e~~~IL~~rl~~~------~~~~~~~~ai~~ia~~~~~ 342 (517)
|++++. ++.+ .+.+.+..+ +....|.+||+.. +++..++...+..+ ....+++++++.+..+ .
T Consensus 278 i~~~~~-~l~~~~~~~~~~~~L~~~-l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~--~ 353 (445)
T TIGR02915 278 VCATNQ-DLKRMIAEGTFREDLFYR-IAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAH--A 353 (445)
T ss_pred EEecCC-CHHHHHHcCCccHHHHHH-hccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhC--C
Confidence 776653 2221 233445455 5556899999853 56665555554322 1246899999998774 4
Q ss_pred HhCCHHHHHHHHHHHHHHH
Q 010136 343 ASGDMRKALSVCRSAIEIL 361 (517)
Q Consensus 343 ~~Gd~R~al~ll~~A~~~a 361 (517)
..|++|..-+++++|+..+
T Consensus 354 wpgNvreL~~~i~~a~~~~ 372 (445)
T TIGR02915 354 WPGNVRELENKVKRAVIMA 372 (445)
T ss_pred CCChHHHHHHHHHHHHHhC
Confidence 5799999999999988543
No 236
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.1e-07 Score=101.83 Aligned_cols=175 Identities=11% Similarity=0.126 Sum_probs=124.9
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccC----CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEE----KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTS 199 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~----~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~ 199 (517)
+.++|+++.+..|.+.+..+..+. +...++|.||.|+|||-++++++..+.... -.++.|++..+..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse-------~~~IriDmse~~e-- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSE-------ENFIRLDMSEFQE-- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCc-------cceEEechhhhhh--
Confidence 357999999999999998887543 244699999999999999999999886422 2588999877543
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCC--------CCC
Q 010136 200 EIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF--------PFS 271 (517)
Q Consensus 200 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~--------~~~ 271 (517)
..++.+....+.|......|.+.+. .+...||+|||||......+..|.++++.... .-.
T Consensus 633 ------vskligsp~gyvG~e~gg~Lteavr------rrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~k 700 (898)
T KOG1051|consen 633 ------VSKLIGSPPGYVGKEEGGQLTEAVK------RRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFK 700 (898)
T ss_pred ------hhhccCCCcccccchhHHHHHHHHh------cCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeecc
Confidence 3445555555556655667777664 66789999999999988778888888887322 235
Q ss_pred cEEEEEEECCCC------cc-------------------------------hhhcccccccCCCceEEEeCCCCHHHHHH
Q 010136 272 RFILIGIANAID------LA-------------------------------DRFLPRLQSMNCKPLVVTFRAYSKDQIIR 314 (517)
Q Consensus 272 ~v~lI~ian~~~------~~-------------------------------~~l~~~l~sr~~~~~~i~f~p~~~~e~~~ 314 (517)
+++||.++|.-. .. ..+.+.+..| ....+.|.|++.+++.+
T Consensus 701 N~I~IMTsn~~~~~i~~~~~~~~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~nr--id~i~lf~~l~~~~~~~ 778 (898)
T KOG1051|consen 701 NAIFIMTSNVGSSAIANDASLEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFRKEFLNR--IDELDLNLPLDRDELIE 778 (898)
T ss_pred ceEEEEecccchHhhhcccccccccccchhhhhhhhhhhhhhhhhhhcccccccChHHhcc--cceeeeecccchhhHhh
Confidence 889999877521 11 0011112222 13478899999999999
Q ss_pred HHHHHHh
Q 010136 315 ILQERLM 321 (517)
Q Consensus 315 IL~~rl~ 321 (517)
|+...+.
T Consensus 779 i~~~~~~ 785 (898)
T KOG1051|consen 779 IVNKQLT 785 (898)
T ss_pred hhhhHHH
Confidence 9887774
No 237
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.71 E-value=7e-08 Score=102.15 Aligned_cols=212 Identities=15% Similarity=0.178 Sum_probs=134.0
Q ss_pred CCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHH
Q 010136 125 TIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSK 204 (517)
Q Consensus 125 ~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~ 204 (517)
.++|......++...+.... .....++|.|.+||||+++++.+...... ....++.+||..+.. ..+-.
T Consensus 135 ~lig~s~~~~~v~~~i~~~a--~~~~~vli~Ge~GtGK~~~A~~ih~~~~~-------~~~~~~~~~c~~~~~-~~~~~- 203 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLS--RSDITVLINGESGTGKELVARALHRHSPR-------ANGPFIALNMAAIPK-DLIES- 203 (463)
T ss_pred ceeecCHHHHHHHHHHHHHh--CcCCeEEEECCCCCCHHHHHHHHHHhCCC-------CCCCeEEEeCCCCCH-HHHHH-
Confidence 47788887888887776643 34567999999999999999887654221 113689999998732 22222
Q ss_pred HHHHhCCCCCCC-CCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCC--------CCCcEEE
Q 010136 205 ILLKLQPRKKLN-GSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF--------PFSRFIL 275 (517)
Q Consensus 205 i~~~l~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~--------~~~~v~l 275 (517)
.+.+..... .+.. .. -...+. ......||||||+.|....|..|..+++.... ....+-+
T Consensus 204 ---~lfg~~~~~~~~~~-~~-~~g~~~------~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~ri 272 (463)
T TIGR01818 204 ---ELFGHEKGAFTGAN-TR-RQGRFE------QADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRI 272 (463)
T ss_pred ---HhcCCCCCCCCCcc-cC-CCCcEE------ECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEE
Confidence 222222111 1110 00 001111 12235699999999988888878777754211 1234567
Q ss_pred EEEECCCCcch-----hhcccccccCCCceEEEeCCCC--HHHHHHHHHHHHhhh------ccCCCChhHHHHHHHHHHH
Q 010136 276 IGIANAIDLAD-----RFLPRLQSMNCKPLVVTFRAYS--KDQIIRILQERLMEL------SYIVFQPQALELCARKVAA 342 (517)
Q Consensus 276 I~ian~~~~~~-----~l~~~l~sr~~~~~~i~f~p~~--~~e~~~IL~~rl~~~------~~~~~~~~ai~~ia~~~~~ 342 (517)
|++++. ++.+ .+.+.+..| +....|.++|+. .+++..++...+..+ ....|++++++.+.++ .
T Consensus 273 i~~~~~-~l~~~~~~~~f~~~L~~r-l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~--~ 348 (463)
T TIGR01818 273 VAATHQ-NLEALVRQGKFREDLFHR-LNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQL--R 348 (463)
T ss_pred EEeCCC-CHHHHHHcCCcHHHHHHH-hCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC--C
Confidence 775653 2222 233344455 444589999998 788888887766532 1246899999999875 5
Q ss_pred HhCCHHHHHHHHHHHHHHHH
Q 010136 343 ASGDMRKALSVCRSAIEILE 362 (517)
Q Consensus 343 ~~Gd~R~al~ll~~A~~~a~ 362 (517)
..|++|..-+++++|+..+.
T Consensus 349 wpgNvreL~~~~~~~~~~~~ 368 (463)
T TIGR01818 349 WPGNVRQLENLCRWLTVMAS 368 (463)
T ss_pred CCChHHHHHHHHHHHHHhCC
Confidence 68999999999999886543
No 238
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.68 E-value=1.1e-07 Score=100.58 Aligned_cols=211 Identities=18% Similarity=0.200 Sum_probs=130.4
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFS 203 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~ 203 (517)
..+++....+..+...+..... ....+++.|++||||+++++.+...... ..-.++.++|..+.. ..
T Consensus 143 ~~ii~~S~~~~~~~~~~~~~a~--~~~~vli~Ge~GtGK~~lA~~ih~~s~~-------~~~~~~~i~c~~~~~-~~--- 209 (457)
T PRK11361 143 GHILTNSPAMMDICKDTAKIAL--SQASVLISGESGTGKELIARAIHYNSRR-------AKGPFIKVNCAALPE-SL--- 209 (457)
T ss_pred cceecccHHHhHHHHHHHHHcC--CCcEEEEEcCCCccHHHHHHHHHHhCCC-------CCCCeEEEECCCCCH-HH---
Confidence 3577777777777777666543 4568999999999999999998653221 113689999998743 22
Q ss_pred HHHHHhCCCCCCC-CCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCC--------CCCcEE
Q 010136 204 KILLKLQPRKKLN-GSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF--------PFSRFI 274 (517)
Q Consensus 204 ~i~~~l~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~--------~~~~v~ 274 (517)
+...+.+..... .+.. .. -...+. ....-+|||||+|.|....|..|..+++.... ....+-
T Consensus 210 -~~~~lfg~~~~~~~~~~-~~-~~g~~~------~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~r 280 (457)
T PRK11361 210 -LESELFGHEKGAFTGAQ-TL-RQGLFE------RANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIR 280 (457)
T ss_pred -HHHHhcCCCCCCCCCCC-CC-CCCceE------ECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceE
Confidence 223333322111 1110 00 001121 12235799999999988888877777654211 113567
Q ss_pred EEEEECCCCcch-----hhcccccccCCCceEEEeCCCC--HHHHHHHHHHHHhhh------ccCCCChhHHHHHHHHHH
Q 010136 275 LIGIANAIDLAD-----RFLPRLQSMNCKPLVVTFRAYS--KDQIIRILQERLMEL------SYIVFQPQALELCARKVA 341 (517)
Q Consensus 275 lI~ian~~~~~~-----~l~~~l~sr~~~~~~i~f~p~~--~~e~~~IL~~rl~~~------~~~~~~~~ai~~ia~~~~ 341 (517)
+|++++. ++.. .+.+.+..+ +....|.++|+. .+++..++...+..+ ....+++++++.+..+
T Consensus 281 ii~~t~~-~l~~~~~~g~~~~~l~~~-l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~-- 356 (457)
T PRK11361 281 IIAATNR-DLQAMVKEGTFREDLFYR-LNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAW-- 356 (457)
T ss_pred EEEeCCC-CHHHHHHcCCchHHHHHH-hccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcC--
Confidence 8887763 2211 233444444 445688888886 466666655554422 1246899999998764
Q ss_pred HHhCCHHHHHHHHHHHHHH
Q 010136 342 AASGDMRKALSVCRSAIEI 360 (517)
Q Consensus 342 ~~~Gd~R~al~ll~~A~~~ 360 (517)
...|++|..-+++++|+..
T Consensus 357 ~wpgNv~eL~~~~~~~~~~ 375 (457)
T PRK11361 357 SWPGNIRELSNVIERAVVM 375 (457)
T ss_pred CCCCcHHHHHHHHHHHHHh
Confidence 4689999999999888754
No 239
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.68 E-value=9.9e-08 Score=101.17 Aligned_cols=212 Identities=16% Similarity=0.177 Sum_probs=134.2
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFS 203 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~ 203 (517)
..++|+...+..+...+..... ....++|.|++|||||++++.+...... ..-.|+.+||..+.. ..+
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~--~~~~vli~Ge~GtGK~~lA~~ih~~s~~-------~~~~~i~i~c~~~~~-~~~-- 205 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSR--SSISVLINGESGTGKELVAHALHRHSPR-------AKAPFIALNMAAIPK-DLI-- 205 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhc--cCCeEEEEeCCCCcHHHHHHHHHhcCCC-------CCCCeEeeeCCCCCH-HHH--
Confidence 3689999888888888776543 4667999999999999999997654321 123699999988732 222
Q ss_pred HHHHHhCCCCCCC-CCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCC--------CCCcEE
Q 010136 204 KILLKLQPRKKLN-GSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF--------PFSRFI 274 (517)
Q Consensus 204 ~i~~~l~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~--------~~~~v~ 274 (517)
...+.+..... .+.. . .-...|. ....-.|||||+|.|....|..|..+++.... ....+-
T Consensus 206 --~~~lfg~~~g~~~~~~-~-~~~g~~~------~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~r 275 (469)
T PRK10923 206 --ESELFGHEKGAFTGAN-T-IRQGRFE------QADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVR 275 (469)
T ss_pred --HHHhcCCCCCCCCCCC-c-CCCCCee------ECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEE
Confidence 22333322211 1110 0 0000121 11223689999999988888777777654211 123567
Q ss_pred EEEEECCCCcch-----hhcccccccCCCceEEEeCCCCH--HHHHHHHHHHHhhh------ccCCCChhHHHHHHHHHH
Q 010136 275 LIGIANAIDLAD-----RFLPRLQSMNCKPLVVTFRAYSK--DQIIRILQERLMEL------SYIVFQPQALELCARKVA 341 (517)
Q Consensus 275 lI~ian~~~~~~-----~l~~~l~sr~~~~~~i~f~p~~~--~e~~~IL~~rl~~~------~~~~~~~~ai~~ia~~~~ 341 (517)
+|++++. ++.+ .+.+.+..+ +....|.+||+.. +++..++...+..+ ....+++++++.+..+
T Consensus 276 ii~~~~~-~l~~~~~~~~~~~~L~~~-l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~-- 351 (469)
T PRK10923 276 IIAATHQ-NLEQRVQEGKFREDLFHR-LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRL-- 351 (469)
T ss_pred EEEeCCC-CHHHHHHcCCchHHHHHH-hcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC--
Confidence 7776653 2222 233455555 5556899999853 67776666665422 1235899999998774
Q ss_pred HHhCCHHHHHHHHHHHHHHH
Q 010136 342 AASGDMRKALSVCRSAIEIL 361 (517)
Q Consensus 342 ~~~Gd~R~al~ll~~A~~~a 361 (517)
...|++|..-+++++|+..+
T Consensus 352 ~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 352 AWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred CCCChHHHHHHHHHHHHHhC
Confidence 57899999999998887654
No 240
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=2.5e-07 Score=88.45 Aligned_cols=180 Identities=19% Similarity=0.259 Sum_probs=107.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNL 228 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~ 228 (517)
-.++++.||.|+|||.+|+.+++.|. ++|.-.+|..++.. ++.|...+..+.++
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~Ln----------VPFaiADATtLTEA----------------GYVGEDVENillkL 150 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILN----------VPFAIADATTLTEA----------------GYVGEDVENILLKL 150 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhC----------CCeeeccccchhhc----------------cccchhHHHHHHHH
Confidence 45899999999999999999999875 57888888776432 12244434444555
Q ss_pred HHhh-hccCCCceEEEEEeCcchhcccC--------------chHHHHHhccCC------------------CCCCcEEE
Q 010136 229 YSQK-LHSSVMKMMLIIADELDYLITRD--------------RAVLHDLFMLTT------------------FPFSRFIL 275 (517)
Q Consensus 229 ~~~~-~~~~~~~~~vI~iDEiD~L~~~~--------------~~~L~~l~~~~~------------------~~~~~v~l 275 (517)
+... +.-.....-||+|||||.+..+. |.+|..+++-.. ...+++.+
T Consensus 151 lqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILF 230 (408)
T COG1219 151 LQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILF 230 (408)
T ss_pred HHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeE
Confidence 4420 00112234699999999998653 566777776411 02245555
Q ss_pred EEEECCCC-------------------------------------cchh-----hcccccccCCCceEEEeCCCCHHHHH
Q 010136 276 IGIANAID-------------------------------------LADR-----FLPRLQSMNCKPLVVTFRAYSKDQII 313 (517)
Q Consensus 276 I~ian~~~-------------------------------------~~~~-----l~~~l~sr~~~~~~i~f~p~~~~e~~ 313 (517)
|+- ...+ .++. +.|.+..| + |..-.+.+++.+++.
T Consensus 231 Icg-GAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGR-l-Pvia~L~~Lde~aLv 307 (408)
T COG1219 231 ICG-GAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGR-L-PVIATLEELDEDALV 307 (408)
T ss_pred Eec-cccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcc-c-ceeeehhhcCHHHHH
Confidence 541 1100 0111 12444555 3 456678889999999
Q ss_pred HHHHHH-------Hhh---hc--cCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 010136 314 RILQER-------LME---LS--YIVFQPQALELCARKVAAASGDMRKALSVCRSA 357 (517)
Q Consensus 314 ~IL~~r-------l~~---~~--~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A 357 (517)
+||..= .+. +. .-.|+++|+..+|++.-...-.+|-.-.++...
T Consensus 308 ~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLRsI~E~~ 363 (408)
T COG1219 308 QILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLRSIIEEL 363 (408)
T ss_pred HHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 998641 111 11 136789999999987654444455433444443
No 241
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.67 E-value=6.7e-07 Score=85.03 Aligned_cols=176 Identities=11% Similarity=0.007 Sum_probs=102.5
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHH
Q 010136 147 EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQ 226 (517)
Q Consensus 147 ~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~ 226 (517)
..+..++++|+.|+||..++.++++.+.+.... -.|....+-..+...-.-.+.--.+ ....-..+.++
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~----------~~Cg~C~sC~~i~~~~HPDl~~i~p-~~~~I~id~ir 73 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKAN----------GFCKTCESCLKILNGKYNDFYLIFD-QKNPIKKEDAL 73 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCC----------CCCCCCHHHHHHhcCCCCCEEEecC-CcccCCHHHHH
Confidence 346678999999999999999999887642110 0122211111110000000000000 00001133333
Q ss_pred HHHHhhhccC--CCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEe
Q 010136 227 NLYSQKLHSS--VMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTF 304 (517)
Q Consensus 227 ~~~~~~~~~~--~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f 304 (517)
++........ .++..|++||++|.|.....+.|..+++.+ ..+.++|.+++. ++.+.|-++|| | +.+.|
T Consensus 74 ~l~~~l~~~s~e~~~~KV~II~~ae~m~~~AaNaLLK~LEEP---p~~t~fiLit~~---~~~lLpTI~SR-C--q~~~~ 144 (261)
T PRK05818 74 SIINKLNRPSVESNGKKIYIIYGIEKLNKQSANSLLKLIEEP---PKNTYGIFTTRN---ENNILNTILSR-C--VQYVV 144 (261)
T ss_pred HHHHHHccCchhcCCCEEEEeccHhhhCHHHHHHHHHhhcCC---CCCeEEEEEECC---hHhCchHhhhh-e--eeeec
Confidence 3333211112 235689999999999877777777777664 467777777874 77889999999 7 78899
Q ss_pred CCC----------CHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHH
Q 010136 305 RAY----------SKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCR 355 (517)
Q Consensus 305 ~p~----------~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~ 355 (517)
+++ +..++.+++..+.. +++ . ++. ...|+..+|+.++.
T Consensus 145 ~~~~~~~~~~~~~~~~~i~~~L~~~~~------~d~-~---i~~---~a~g~~~~a~~l~~ 192 (261)
T PRK05818 145 LSKEKKVPFKVESNDRYFQYILLSFYS------VDE-Q---LQA---YNNGSFSKLKNIIE 192 (261)
T ss_pred CChhhhcccccccChHHHHHHHHHccC------ccH-H---HHH---HcCCCHHHHHHHHH
Confidence 887 45555555443321 222 2 222 47899999998887
No 242
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.66 E-value=4e-07 Score=97.55 Aligned_cols=305 Identities=15% Similarity=0.087 Sum_probs=166.2
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhccCCC--------CeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCC
Q 010136 123 PSTIVCREDEQKKVLEFCKKNLEEEKA--------GSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTS 194 (517)
Q Consensus 123 p~~l~gRe~e~~~l~~~L~~~l~~~~~--------~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~ 194 (517)
-..++|.+...+.|.-.|........+ -|+||.|.||||||.+.+.+.+-+. .-+|+++..
T Consensus 285 aPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aP-----------r~vytsgkg 353 (682)
T COG1241 285 APSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAP-----------RGVYTSGKG 353 (682)
T ss_pred cccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCC-----------ceEEEcccc
Confidence 347899998776666665544332111 3899999999999999999987653 467777655
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCC-------
Q 010136 195 LTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTT------- 267 (517)
Q Consensus 195 ~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~------- 267 (517)
.+.......-.-... .| +..+....+ -....-|.+|||+|.+......+|+..++--+
T Consensus 354 ss~~GLTAav~rd~~-------tg-------e~~LeaGAL-VlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAG 418 (682)
T COG1241 354 SSAAGLTAAVVRDKV-------TG-------EWVLEAGAL-VLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAG 418 (682)
T ss_pred ccccCceeEEEEccC-------CC-------eEEEeCCEE-EEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccc
Confidence 322111000000000 00 000110000 01223588999999998888888888776521
Q ss_pred ---CCCCcEEEEEEECCCC--------cchh--hcccccccCCCceEEEeCCCCHHHHHH----HHHHHH----------
Q 010136 268 ---FPFSRFILIGIANAID--------LADR--FLPRLQSMNCKPLVVTFRAYSKDQIIR----ILQERL---------- 320 (517)
Q Consensus 268 ---~~~~~v~lI~ian~~~--------~~~~--l~~~l~sr~~~~~~i~f~p~~~~e~~~----IL~~rl---------- 320 (517)
.-+.++.+++++|... ..++ +.+.+.|| |..-.+....++.+.-.. |+..+.
T Consensus 419 I~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSR-FDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~ 497 (682)
T COG1241 419 ITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSR-FDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISL 497 (682)
T ss_pred eeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhh-CCeeEEecCCCCccchHHHHHHHHHHHhcccccccccc
Confidence 1346778888899753 1122 45778898 744333334444432222 222221
Q ss_pred ------------------h---hhccCCCChhHHHHHHHHHHHHhC-------------CHHHHHHHHHHHHHHHHHHHH
Q 010136 321 ------------------M---ELSYIVFQPQALELCARKVAAASG-------------DMRKALSVCRSAIEILEAEMR 366 (517)
Q Consensus 321 ------------------~---~~~~~~~~~~ai~~ia~~~~~~~G-------------d~R~al~ll~~A~~~a~~~~~ 366 (517)
. ......+++++.+.+...+..... .+|+.-.+.|-|-..|..+..
T Consensus 498 ~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS 577 (682)
T COG1241 498 DGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLS 577 (682)
T ss_pred ccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhcc
Confidence 1 001146677777777765543322 145555566666655555544
Q ss_pred hhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccChhH------------HHhcc-CCHHHHHHHHHHH
Q 010136 367 ESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSPVV------------DTIKS-LPQHQQILLCSAV 433 (517)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~~~------------~~i~~-L~~~~k~iL~al~ 433 (517)
+ .|+.+|+..|+.-+..+... +.+.. -+..+.....-+.
T Consensus 578 ~----------------------------~V~~eD~~eAi~lv~~~l~~v~~dp~~g~~d~~~~~~~~~~~~~~~~~~~~ 629 (682)
T COG1241 578 D----------------------------VVEEEDVDEAIRLVDFSLKTVAVDPEKGKIDIDIIEPGKSKSKRDKIEKVL 629 (682)
T ss_pred C----------------------------CCCHHHHHHHHHHHHHHHHHhhcCccCCceehhhhccCCcchhhhhHHHHH
Confidence 4 79999999998776633211 11111 2322333222222
Q ss_pred HHHhc--CCCCccHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhcCceeeccCCcee
Q 010136 434 KFFRG--GKKDMTVGELNKSYMNICKTSLIPPVGTLEFFSMCRVLHDQGVLKVGRDDKLK 491 (517)
Q Consensus 434 ~l~~~--~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~L~~~glI~~~~~~~~~ 491 (517)
..... ....-...++++... -++..++.++++.|...|.|-....|.+.
T Consensus 630 ~~i~e~~~~~~~~~~~~~~~~~---------g~~~~~~e~~l~~l~~~g~i~~~~~g~~~ 680 (682)
T COG1241 630 DIIKELVERSEDPVEEIIEEAE---------GISEKEVEEALEKLKKKGDILEPNPGYYL 680 (682)
T ss_pred HHHHHHhhcccchHHHHHHHHc---------CCCHHHHHHHHHHHHhcCcEeccCCCeee
Confidence 22211 111113333332211 46778899999999999998766666543
No 243
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.65 E-value=3.6e-09 Score=88.83 Aligned_cols=106 Identities=16% Similarity=0.218 Sum_probs=58.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYS 230 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~ 230 (517)
+++|.|+||+|||++++++++.++. .|..|.+.....+.++...- +-... . ..|.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~----------~f~RIq~tpdllPsDi~G~~---v~~~~----~--------~~f~ 55 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGL----------SFKRIQFTPDLLPSDILGFP---VYDQE----T--------GEFE 55 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT------------EEEEE--TT--HHHHHEEE---EEETT----T--------TEEE
T ss_pred CEeeECCCccHHHHHHHHHHHHcCC----------ceeEEEecCCCCcccceeee---eeccC----C--------CeeE
Confidence 6899999999999999999988763 57788887666666642110 00000 0 0000
Q ss_pred hhhccCCCceEEEEEeCcchhcccCchHHHHHhccCC--------CCCCcEEEEEEECCCC
Q 010136 231 QKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTT--------FPFSRFILIGIANAID 283 (517)
Q Consensus 231 ~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~--------~~~~~v~lI~ian~~~ 283 (517)
.....--.-|+++||+.....+.|.+|++.+...+ .-...+.||++.|..+
T Consensus 56 --~~~GPif~~ill~DEiNrappktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e 114 (131)
T PF07726_consen 56 --FRPGPIFTNILLADEINRAPPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVE 114 (131)
T ss_dssp --EEE-TT-SSEEEEETGGGS-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT-
T ss_pred --eecChhhhceeeecccccCCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccc
Confidence 00001112389999999999999999999886521 1234688999999765
No 244
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.64 E-value=1e-07 Score=104.99 Aligned_cols=210 Identities=20% Similarity=0.230 Sum_probs=137.9
Q ss_pred hhcCcCCCCC---CCCCcHHHHHHHHHHHHHhhcc-------CC---CC--eEEEEcCCCCcHHHHHHHHHHHHHHHHHh
Q 010136 115 EALHVSTAPS---TIVCREDEQKKVLEFCKKNLEE-------EK---AG--SLYVCGCPGTGKSLSMEKVQHYLVDWAKE 179 (517)
Q Consensus 115 ~~l~~~~~p~---~l~gRe~e~~~l~~~L~~~l~~-------~~---~~--~lli~G~pGtGKT~l~~~v~~~l~~~~~~ 179 (517)
..|...|-|. .+.|-......+..||...-.. .. .. .++++|+||+|||+.+..++.+++
T Consensus 308 ~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g----- 382 (871)
T KOG1968|consen 308 AGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELG----- 382 (871)
T ss_pred cccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcc-----
Confidence 3455555554 3555555555777777765111 00 11 368999999999999999998876
Q ss_pred cCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH---HhhhccCCCceEEEEEeCcchhcccCc
Q 010136 180 AGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLY---SQKLHSSVMKMMLIIADELDYLITRDR 256 (517)
Q Consensus 180 ~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~vI~iDEiD~L~~~~~ 256 (517)
+.+++.|+....+...++..+......+. +...+ .. -........||++||+|-+...+.
T Consensus 383 -----~~v~E~Nas~~RSk~~l~~~~~~~~~s~s-----------i~~~~~~~~~-~~~~~~~~~vil~devD~~~~~dR 445 (871)
T KOG1968|consen 383 -----FKVVEKNASDVRSKKELLNKLGNATSSHS-----------IKGSKKKKGN-RQSLNSDHFLILMDEVDGMFGEDR 445 (871)
T ss_pred -----cceeecCccccccccHHHhhhhccccccc-----------hhhhhccccc-ccccccceeEEEEeccccccchhh
Confidence 57999999999998888777766553222 11122 11 011234456999999999987444
Q ss_pred hHHHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHH
Q 010136 257 AVLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELC 336 (517)
Q Consensus 257 ~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~i 336 (517)
..+-.+..... .+..=+|++.|+.+++. .+..++-+ ..++|..++..++..-+...+... ...++++.++.+
T Consensus 446 g~v~~l~~l~~--ks~~Piv~~cndr~~p~---sr~~~~~~--~~l~f~kP~~~~i~~ri~si~~se-~~ki~~~~l~~~ 517 (871)
T KOG1968|consen 446 GGVSKLSSLCK--KSSRPLVCTCNDRNLPK---SRALSRAC--SDLRFSKPSSELIRSRIMSICKSE-GIKISDDVLEEI 517 (871)
T ss_pred hhHHHHHHHHH--hccCCeEEEecCCCCcc---ccchhhhc--ceeeecCCcHHHHHhhhhhhhccc-ceecCcHHHHHH
Confidence 33333333322 23334666789876553 23333313 589999999999998887665432 246888888888
Q ss_pred HHHHHHHhCCHHHHHHHHHHH
Q 010136 337 ARKVAAASGDMRKALSVCRSA 357 (517)
Q Consensus 337 a~~~~~~~Gd~R~al~ll~~A 357 (517)
.+ ...||+|..+..++.-
T Consensus 518 s~---~~~~DiR~~i~~lq~~ 535 (871)
T KOG1968|consen 518 SK---LSGGDIRQIIMQLQFW 535 (871)
T ss_pred HH---hcccCHHHHHHHHhhh
Confidence 76 4799999999888665
No 245
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.61 E-value=2.2e-07 Score=88.70 Aligned_cols=129 Identities=20% Similarity=0.216 Sum_probs=74.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNL 228 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~ 228 (517)
..+++|+|+||||||+++.+++..+... + ..+++++. .+++..+...+.. .... .+.+.+.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~----g---~~v~~it~------~~l~~~l~~~~~~-----~~~~-~~~~l~~ 159 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLR----G---KSVLIITV------ADIMSAMKDTFSN-----SETS-EEQLLND 159 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhc----C---CeEEEEEH------HHHHHHHHHHHhh-----cccc-HHHHHHH
Confidence 3589999999999999999999998652 2 35677743 4444444433310 0111 2222222
Q ss_pred HHhhhccCCCceEEEEEeCcchhcccC--chHHHHHhccCCCCCCcEEEEEEECCC--CcchhhcccccccCC--CceEE
Q 010136 229 YSQKLHSSVMKMMLIIADELDYLITRD--RAVLHDLFMLTTFPFSRFILIGIANAI--DLADRFLPRLQSMNC--KPLVV 302 (517)
Q Consensus 229 ~~~~~~~~~~~~~vI~iDEiD~L~~~~--~~~L~~l~~~~~~~~~~v~lI~ian~~--~~~~~l~~~l~sr~~--~~~~i 302 (517)
+. ..-+|||||++...... ...|+.+++.-..... .+|.+||-. ++.+.+..++.+|.+ ....|
T Consensus 160 l~--------~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~--~tiitSNl~~~~l~~~~g~ri~sRl~~~~~~~i 229 (244)
T PRK07952 160 LS--------NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKR--PTGMLTNSNMEEMTKLLGERVMDRMRLGNSLWV 229 (244)
T ss_pred hc--------cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCC--CEEEeCCCCHHHHHHHhChHHHHHHHHCCceEE
Confidence 22 34599999998875432 3578888876432222 244447742 233344566666621 23566
Q ss_pred EeCC
Q 010136 303 TFRA 306 (517)
Q Consensus 303 ~f~p 306 (517)
.|.-
T Consensus 230 ~f~~ 233 (244)
T PRK07952 230 IFNW 233 (244)
T ss_pred EeeC
Confidence 7764
No 246
>PRK08181 transposase; Validated
Probab=98.60 E-value=3.3e-07 Score=88.79 Aligned_cols=102 Identities=24% Similarity=0.301 Sum_probs=61.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQN 227 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~ 227 (517)
...+++|+||||||||+++.+++.++... | ..++|++. ..++..+..... ... ...+.+
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~----g---~~v~f~~~------~~L~~~l~~a~~-------~~~-~~~~l~ 163 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIEN----G---WRVLFTRT------TDLVQKLQVARR-------ELQ-LESAIA 163 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHc----C---CceeeeeH------HHHHHHHHHHHh-------CCc-HHHHHH
Confidence 45789999999999999999999887542 2 34677765 334444432221 111 111222
Q ss_pred HHHhhhccCCCceEEEEEeCcchhcccC--chHHHHHhccCCCCCCcEEEEEEECC
Q 010136 228 LYSQKLHSSVMKMMLIIADELDYLITRD--RAVLHDLFMLTTFPFSRFILIGIANA 281 (517)
Q Consensus 228 ~~~~~~~~~~~~~~vI~iDEiD~L~~~~--~~~L~~l~~~~~~~~~~v~lI~ian~ 281 (517)
.+ .+.-+|||||++.+.... +..|+++++..... . .+|.++|.
T Consensus 164 ~l--------~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~-~--s~IiTSN~ 208 (269)
T PRK08181 164 KL--------DKFDLLILDDLAYVTKDQAETSVLFELISARYER-R--SILITANQ 208 (269)
T ss_pred HH--------hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhC-C--CEEEEcCC
Confidence 22 234699999999876543 35788888753322 2 24445674
No 247
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.60 E-value=3.3e-06 Score=98.83 Aligned_cols=201 Identities=17% Similarity=0.133 Sum_probs=115.1
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCC-----
Q 010136 122 APSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLT----- 196 (517)
Q Consensus 122 ~p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~----- 196 (517)
.++.++|++..++++...|.. .......+.|+|++|+||||+|+++++.+..... ..++++.....
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l--~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~-------g~vfv~~~~v~~~~~~ 252 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHL--ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQ-------SSVFIDRAFISKSMEI 252 (1153)
T ss_pred ccccccchHHHHHHHHHHHcc--ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCC-------eEEEeeccccccchhh
Confidence 456899999999999888743 3345667889999999999999999887754211 12333321000
Q ss_pred ----------CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccC
Q 010136 197 ----------NTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLT 266 (517)
Q Consensus 197 ----------s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~ 266 (517)
....+...+..++....... ......+++.+ ..++.+||||+++... ..+.|....+|.
T Consensus 253 ~~~~~~~~~~~~~~l~~~~l~~il~~~~~~--~~~~~~~~~~L-------~~krvLLVLDdv~~~~--~l~~L~~~~~~~ 321 (1153)
T PLN03210 253 YSSANPDDYNMKLHLQRAFLSEILDKKDIK--IYHLGAMEERL-------KHRKVLIFIDDLDDQD--VLDALAGQTQWF 321 (1153)
T ss_pred cccccccccchhHHHHHHHHHHHhCCCCcc--cCCHHHHHHHH-------hCCeEEEEEeCCCCHH--HHHHHHhhCccC
Confidence 00112223333332211110 00122334443 3467899999997542 124444444443
Q ss_pred CCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCC
Q 010136 267 TFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGD 346 (517)
Q Consensus 267 ~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd 346 (517)
. +++.|+| +|.+.... .. . ...+.+.+..++.++-.+++..++-+. ...++.+..+++.+....|.
T Consensus 322 ~-~GsrIIi--TTrd~~vl----~~---~-~~~~~~~v~~l~~~ea~~LF~~~Af~~---~~~~~~~~~l~~~iv~~c~G 387 (1153)
T PLN03210 322 G-SGSRIIV--ITKDKHFL----RA---H-GIDHIYEVCLPSNELALEMFCRSAFKK---NSPPDGFMELASEVALRAGN 387 (1153)
T ss_pred C-CCcEEEE--EeCcHHHH----Hh---c-CCCeEEEecCCCHHHHHHHHHHHhcCC---CCCcHHHHHHHHHHHHHhCC
Confidence 2 3344333 45532111 11 1 112578888999999999988765421 22344566677777788888
Q ss_pred HHHHHHHHHH
Q 010136 347 MRKALSVCRS 356 (517)
Q Consensus 347 ~R~al~ll~~ 356 (517)
...|+.++-.
T Consensus 388 LPLAl~vlgs 397 (1153)
T PLN03210 388 LPLGLNVLGS 397 (1153)
T ss_pred CcHHHHHHHH
Confidence 8888876643
No 248
>PRK06921 hypothetical protein; Provisional
Probab=98.60 E-value=2.4e-07 Score=90.06 Aligned_cols=127 Identities=17% Similarity=0.217 Sum_probs=70.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQN 227 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~ 227 (517)
...+++|+|+||+|||+++.++++++.... + ..++|++.. .++..+...+ ..+..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~---g---~~v~y~~~~------~l~~~l~~~~-------------~~~~~ 170 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK---G---VPVLYFPFV------EGFGDLKDDF-------------DLLEA 170 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc---C---ceEEEEEHH------HHHHHHHHHH-------------HHHHH
Confidence 467899999999999999999999886521 2 357888753 2233332221 11122
Q ss_pred HHHhhhccCCCceEEEEEeCcch-hcc------cCchHHHHHhccCCCCCCcEEEEEEECCC--Ccchhhccccccc---
Q 010136 228 LYSQKLHSSVMKMMLIIADELDY-LIT------RDRAVLHDLFMLTTFPFSRFILIGIANAI--DLADRFLPRLQSM--- 295 (517)
Q Consensus 228 ~~~~~~~~~~~~~~vI~iDEiD~-L~~------~~~~~L~~l~~~~~~~~~~v~lI~ian~~--~~~~~l~~~l~sr--- 295 (517)
.+. .-...-||||||++. +.. ..++.|+.+++.....+.. +|.++|.. ++. .+++++.+|
T Consensus 171 ~~~-----~~~~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~--tIitsn~~~~el~-~~~~~l~sRi~~ 242 (266)
T PRK06921 171 KLN-----RMKKVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKP--ILISSELTIDELL-DIDEALGSRIVE 242 (266)
T ss_pred HHH-----HhcCCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCC--EEEECCCCHHHHh-hhhhHHHHHHHH
Confidence 222 112346999999954 211 1235688888764333333 33346642 121 123444444
Q ss_pred CCCceEEEeCCC
Q 010136 296 NCKPLVVTFRAY 307 (517)
Q Consensus 296 ~~~~~~i~f~p~ 307 (517)
.+....+.|..-
T Consensus 243 r~~~~~i~~~g~ 254 (266)
T PRK06921 243 MCKDYLVIIKGD 254 (266)
T ss_pred hccCeEEEecCc
Confidence 133456777543
No 249
>PTZ00202 tuzin; Provisional
Probab=98.60 E-value=2.6e-06 Score=85.86 Aligned_cols=175 Identities=15% Similarity=0.173 Sum_probs=102.5
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHH
Q 010136 123 PSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIF 202 (517)
Q Consensus 123 p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~ 202 (517)
+..++||+.|...|...|.. .....+..+.|.|++|+|||++++.+...+. ...+++|.. ++.+++
T Consensus 261 ~~~FVGReaEla~Lr~VL~~-~d~~~privvLtG~~G~GKTTLlR~~~~~l~----------~~qL~vNpr---g~eElL 326 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRR-LDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----------MPAVFVDVR---GTEDTL 326 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhc-cCCCCceEEEEECCCCCCHHHHHHHHHhcCC----------ceEEEECCC---CHHHHH
Confidence 34799999999999888875 3333456888999999999999999986653 235556654 679999
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCce-EEEEEeCcchhcccCchHHHHHhccC-CCCCCcEEEEEEEC
Q 010136 203 SKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKM-MLIIADELDYLITRDRAVLHDLFMLT-TFPFSRFILIGIAN 280 (517)
Q Consensus 203 ~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~vI~iDEiD~L~~~~~~~L~~l~~~~-~~~~~~v~lI~ian 280 (517)
..++.+|+..... ......+.|++.+..........+ +||=|-|-+.|.. +..+..-+. ...-+++++=.--.
T Consensus 327 r~LL~ALGV~p~~-~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~r----vyne~v~la~drr~ch~v~evple 401 (550)
T PTZ00202 327 RSVVKALGVPNVE-ACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQR----VYNEVVALACDRRLCHVVIEVPLE 401 (550)
T ss_pred HHHHHHcCCCCcc-cHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHH----HHHHHHHHHccchhheeeeeehHh
Confidence 9999999863221 111223445544443222212223 3333567666632 222222221 11122333211111
Q ss_pred CCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhh
Q 010136 281 AIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMEL 323 (517)
Q Consensus 281 ~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~ 323 (517)
.+....-.+|| + ....+++++.+|-.+..++.+..+
T Consensus 402 slt~~~~~lpr-----l--df~~vp~fsr~qaf~y~~h~~dal 437 (550)
T PTZ00202 402 SLTIANTLLPR-----L--DFYLVPNFSRSQAFAYTQHAIDAL 437 (550)
T ss_pred hcchhcccCcc-----c--eeEecCCCCHHHHHHHHhhccchH
Confidence 11122222333 3 456779999999999999888754
No 250
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1e-06 Score=89.53 Aligned_cols=153 Identities=13% Similarity=0.233 Sum_probs=96.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLY 229 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~ 229 (517)
.++++.||||+|||+||-.++..- + |+|+.+-.....-... ...-...+.+.|
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S-------~---FPFvKiiSpe~miG~s-----------------EsaKc~~i~k~F 591 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSS-------D---FPFVKIISPEDMIGLS-----------------ESAKCAHIKKIF 591 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhc-------C---CCeEEEeChHHccCcc-----------------HHHHHHHHHHHH
Confidence 379999999999999998887542 2 5677665433210000 011245677778
Q ss_pred HhhhccCCCceEEEEEeCcchhcccC-------c---hHHHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCc
Q 010136 230 SQKLHSSVMKMMLIIADELDYLITRD-------R---AVLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKP 299 (517)
Q Consensus 230 ~~~~~~~~~~~~vI~iDEiD~L~~~~-------~---~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~ 299 (517)
.+.+ +....||++|+++.|..-. . ..|.-|+....-.+.++.++|+|...++.+.. .+.. |..
T Consensus 592 ~DAY---kS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m--~i~~--~F~ 664 (744)
T KOG0741|consen 592 EDAY---KSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEM--GILD--CFS 664 (744)
T ss_pred HHhh---cCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHc--CHHH--hhh
Confidence 7543 4556799999999998642 1 22333443333344578888877755444432 2222 234
Q ss_pred eEEEeCCCCH-HHHHHHHHHHHhhhccCCCChhHHHHHHHHHHH
Q 010136 300 LVVTFRAYSK-DQIIRILQERLMELSYIVFQPQALELCARKVAA 342 (517)
Q Consensus 300 ~~i~f~p~~~-~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~ 342 (517)
..|+++-++. +++.++|... +.|.++..+.++.....
T Consensus 665 ~~i~Vpnl~~~~~~~~vl~~~------n~fsd~~~~~~~~~~~~ 702 (744)
T KOG0741|consen 665 STIHVPNLTTGEQLLEVLEEL------NIFSDDEVRAIAEQLLS 702 (744)
T ss_pred heeecCccCchHHHHHHHHHc------cCCCcchhHHHHHHHhc
Confidence 5899999876 8888888742 46778888888775543
No 251
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.56 E-value=1e-07 Score=95.12 Aligned_cols=141 Identities=18% Similarity=0.171 Sum_probs=79.3
Q ss_pred HHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCC
Q 010136 137 LEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLN 216 (517)
Q Consensus 137 ~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~ 216 (517)
..|+..+.. ...+++|+|++|||||+|+.++++++... | ..++|+++..+ +..+...-...
T Consensus 173 ~~f~~~f~~--~~~~Lll~G~~GtGKThLa~aIa~~l~~~----g---~~V~y~t~~~l------~~~l~~~~~~~---- 233 (329)
T PRK06835 173 KNFIENFDK--NNENLLFYGNTGTGKTFLSNCIAKELLDR----G---KSVIYRTADEL------IEILREIRFNN---- 233 (329)
T ss_pred HHHHHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHHHC----C---CeEEEEEHHHH------HHHHHHHHhcc----
Confidence 334554432 34889999999999999999999998652 2 46788886443 33332211000
Q ss_pred CCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhccc--CchHHHHHhccCCCCCCcEEEEEEECCC--Ccchhhcccc
Q 010136 217 GSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITR--DRAVLHDLFMLTTFPFSRFILIGIANAI--DLADRFLPRL 292 (517)
Q Consensus 217 ~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~--~~~~L~~l~~~~~~~~~~v~lI~ian~~--~~~~~l~~~l 292 (517)
.......+..+. ..-+||||++...... .++.|+.+++.....+.. +|.+||.. ++.+.+.+++
T Consensus 234 -~~~~~~~~~~l~---------~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~--tIiTSNl~~~el~~~~~eri 301 (329)
T PRK06835 234 -DKELEEVYDLLI---------NCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKK--MIISTNLSLEELLKTYSERI 301 (329)
T ss_pred -chhHHHHHHHhc---------cCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCC--EEEECCCCHHHHHHHHhHHH
Confidence 001011122222 2358999999776433 346788888764322222 34446642 2334455677
Q ss_pred cccCC-CceEEEeCCCC
Q 010136 293 QSMNC-KPLVVTFRAYS 308 (517)
Q Consensus 293 ~sr~~-~~~~i~f~p~~ 308 (517)
.||.. ....+.|..-+
T Consensus 302 ~SRL~~~~~~i~~~G~d 318 (329)
T PRK06835 302 SSRLLGNFTLLKFYGED 318 (329)
T ss_pred HHHHHcCCEEEEecCcC
Confidence 77721 23466665433
No 252
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.53 E-value=2.8e-08 Score=86.84 Aligned_cols=133 Identities=23% Similarity=0.325 Sum_probs=80.4
Q ss_pred CCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHH
Q 010136 127 VCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKIL 206 (517)
Q Consensus 127 ~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~ 206 (517)
+|....++++...+..... ....++|+|++||||+++|+++...-.. ..-.++.++|....
T Consensus 1 vG~S~~~~~l~~~l~~~a~--~~~pvli~GE~GtGK~~~A~~lh~~~~~-------~~~~~~~~~~~~~~---------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK--SSSPVLITGEPGTGKSLLARALHRYSGR-------ANGPFIVIDCASLP---------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC--SSS-EEEECCTTSSHHHHHHCCHHTTTT-------CCS-CCCCCHHCTC----------
T ss_pred CCCCHHHHHHHHHHHHHhC--CCCcEEEEcCCCCCHHHHHHHHHhhcCc-------cCCCeEEechhhCc----------
Confidence 4666778888888888653 5678999999999999999997654221 11134455555432
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCCCcch
Q 010136 207 LKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAIDLAD 286 (517)
Q Consensus 207 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~ 286 (517)
.+.+.. .....|+|+|+|.|....|..|..++...... ++-+|+++.. ++.+
T Consensus 62 -------------------~~~l~~------a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~--~~RlI~ss~~-~l~~ 113 (138)
T PF14532_consen 62 -------------------AELLEQ------AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERS--NVRLIASSSQ-DLEE 113 (138)
T ss_dssp -------------------HHHHHH------CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTT--TSEEEEEECC--CCC
T ss_pred -------------------HHHHHH------cCCCEEEECChHHCCHHHHHHHHHHHHhcCCC--CeEEEEEeCC-CHHH
Confidence 112221 12347899999999988888888777654323 3445544432 2222
Q ss_pred -----hhcccccccCCCceEEEeCCC
Q 010136 287 -----RFLPRLQSMNCKPLVVTFRAY 307 (517)
Q Consensus 287 -----~l~~~l~sr~~~~~~i~f~p~ 307 (517)
.+.+.+..+ +....|.+||+
T Consensus 114 l~~~~~~~~~L~~~-l~~~~i~lPpL 138 (138)
T PF14532_consen 114 LVEEGRFSPDLYYR-LSQLEIHLPPL 138 (138)
T ss_dssp HHHHSTHHHHHHHH-CSTCEEEE---
T ss_pred HhhccchhHHHHHH-hCCCEEeCCCC
Confidence 356677776 66678888874
No 253
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.49 E-value=5.7e-06 Score=82.47 Aligned_cols=53 Identities=23% Similarity=0.366 Sum_probs=46.1
Q ss_pred CCCCcHHHHHHHHHHHHHhhcc--CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHH
Q 010136 125 TIVCREDEQKKVLEFCKKNLEE--EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWA 177 (517)
Q Consensus 125 ~l~gRe~e~~~l~~~L~~~l~~--~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~ 177 (517)
+++|.++.++++..++.....+ .....++|.||||+|||++++++++.+....
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys 106 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYS 106 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhc
Confidence 6899999999999999988763 2346789999999999999999999998743
No 254
>PRK14700 recombination factor protein RarA; Provisional
Probab=98.48 E-value=1.3e-06 Score=84.10 Aligned_cols=87 Identities=17% Similarity=0.202 Sum_probs=70.3
Q ss_pred CCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhh---hc--cCCCChhHHHHHHHHHH
Q 010136 267 TFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLME---LS--YIVFQPQALELCARKVA 341 (517)
Q Consensus 267 ~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~---~~--~~~~~~~ai~~ia~~~~ 341 (517)
...++.+++||+|+ .+-.-.+.+.+.|| + +++.|.|++.+++..+|+..+.. +. ...+++++++.|++
T Consensus 3 ~vE~G~i~LIGATT-ENP~f~vn~ALlSR-~--~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~--- 75 (300)
T PRK14700 3 YVESGKIILIGATT-ENPTYYLNDALVSR-L--FILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHN--- 75 (300)
T ss_pred CccCCcEEEEeecC-CCccceecHhhhhh-h--heeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHH---
Confidence 34567899999654 44344578999999 7 79999999999999999988753 11 24689999999988
Q ss_pred HHhCCHHHHHHHHHHHHHH
Q 010136 342 AASGDMRKALSVCRSAIEI 360 (517)
Q Consensus 342 ~~~Gd~R~al~ll~~A~~~ 360 (517)
.+.||+|.|+++|..|+..
T Consensus 76 ~a~GDaR~aLN~LE~a~~~ 94 (300)
T PRK14700 76 YNEGDCRKILNLLERMFLI 94 (300)
T ss_pred hcCCHHHHHHHHHHHHHhh
Confidence 5899999999999998743
No 255
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.48 E-value=6.1e-06 Score=83.47 Aligned_cols=296 Identities=15% Similarity=0.141 Sum_probs=169.9
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhccCC--------CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCC
Q 010136 123 PSTIVCREDEQKKVLEFCKKNLEEEK--------AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTS 194 (517)
Q Consensus 123 p~~l~gRe~e~~~l~~~L~~~l~~~~--------~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~ 194 (517)
-.+++|.++..+.|.-.|-....... .-++++.|.||+.|+-|++++.+--. .-+|..+..
T Consensus 341 APEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlap-----------RgvYTTGrG 409 (721)
T KOG0482|consen 341 APEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAP-----------RGVYTTGRG 409 (721)
T ss_pred chhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCc-----------ccceecCCC
Confidence 34799999988877777655443222 12799999999999999999866432 335555443
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccC--------
Q 010136 195 LTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLT-------- 266 (517)
Q Consensus 195 ~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~-------- 266 (517)
.....-.-.-+-..+.++-....|. .++ ...-|-+|||+|.+...+..++++.++--
T Consensus 410 SSGVGLTAAVmkDpvTgEM~LEGGA------------LVL---AD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAG 474 (721)
T KOG0482|consen 410 SSGVGLTAAVMKDPVTGEMVLEGGA------------LVL---ADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAG 474 (721)
T ss_pred CCccccchhhhcCCCCCeeEeccce------------EEE---ccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhc
Confidence 2221110000111111100000000 011 11247789999999888777777776541
Q ss_pred --CCCCCcEEEEEEECCCC--------cch--hhcccccccCCCce-----------------------------EEEeC
Q 010136 267 --TFPFSRFILIGIANAID--------LAD--RFLPRLQSMNCKPL-----------------------------VVTFR 305 (517)
Q Consensus 267 --~~~~~~v~lI~ian~~~--------~~~--~l~~~l~sr~~~~~-----------------------------~i~f~ 305 (517)
+.-+.++.+++++|..- ..+ .|..+|.|| |..- ...|.
T Consensus 475 I~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSR-FDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fe 553 (721)
T KOG0482|consen 475 INTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSR-FDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFE 553 (721)
T ss_pred cccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHh-hhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCC
Confidence 22356788889898641 001 122445555 3211 24466
Q ss_pred CCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHH------HHh-----CCHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 010136 306 AYSKDQIIRILQERLMELSYIVFQPQALELCARKVA------AAS-----GDMRKALSVCRSAIEILEAEMRESVSKMNS 374 (517)
Q Consensus 306 p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~------~~~-----Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~ 374 (517)
|++.+-++.++...-. ....++++.-+++...+- +++ -.+|..+.++|-+..+|......
T Consensus 554 pl~~~~mR~yI~~ak~--~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~------- 624 (721)
T KOG0482|consen 554 PLDPNLMRRYISLAKR--KNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSD------- 624 (721)
T ss_pred CCCHHHHHHHHHHHhh--cCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhcc-------
Confidence 6666666665553222 124566666666654331 112 34788999999998888877665
Q ss_pred ccccccchhhhhhhhhhccCccccHHHHHHHHHHhccChhH---H--HhccCCHHHHHHHHHHHH-HHh-cCCCCccHHH
Q 010136 375 ASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSPVV---D--TIKSLPQHQQILLCSAVK-FFR-GGKKDMTVGE 447 (517)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~~~---~--~i~~L~~~~k~iL~al~~-l~~-~~~~~~~~~~ 447 (517)
.|..+||.+|+.-+.-+... + .....+.. -...++++ +.. +++..+.+.+
T Consensus 625 ---------------------~V~~~DV~EALRLme~sK~sL~~~~~~~~~~~~~--~~if~iirel~~e~g~~~v~~s~ 681 (721)
T KOG0482|consen 625 ---------------------SVEEDDVNEALRLMEMSKDSLYQDDGQKEDTSAT--DAIFAIIRELAGEGGKRCVKLSN 681 (721)
T ss_pred ---------------------ccchhhHHHHHHHHHhhhcccccccccccccchH--HHHHHHHHHHHhhcCCceeeHHH
Confidence 79999999999877654311 1 22334442 22334443 333 3555678877
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHhhcCceee
Q 010136 448 LNKSYMNICKTSLIPPVGTLEFFSMCRVLHDQGVLKV 484 (517)
Q Consensus 448 l~~~y~~~~~~~~~~~~~~~~~~~~~~~L~~~glI~~ 484 (517)
+.+ -|..-++ +..++.+.+++-.++|+--.
T Consensus 682 ~~~----r~~~kGf---s~~ql~~~i~ey~~lnVw~~ 711 (721)
T KOG0482|consen 682 AEQ----RCVRKGF---SEAQLKKCIDEYAELNVWQV 711 (721)
T ss_pred HHH----HHHHcCC---CHHHHHHHHHHHHhcCeEEE
Confidence 754 3555443 55678888888888886543
No 256
>PRK06526 transposase; Provisional
Probab=98.42 E-value=7.7e-08 Score=92.65 Aligned_cols=102 Identities=20% Similarity=0.190 Sum_probs=60.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQN 227 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~ 227 (517)
...+++|+||||||||+++.+++.++.. .|. .+.++++ ..++..+..... .......+..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~----~g~---~v~f~t~------~~l~~~l~~~~~-------~~~~~~~l~~ 156 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQ----AGH---RVLFATA------AQWVARLAAAHH-------AGRLQAELVK 156 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHH----CCC---chhhhhH------HHHHHHHHHHHh-------cCcHHHHHHH
Confidence 4678999999999999999999887653 232 3344332 334444432221 1111222222
Q ss_pred HHHhhhccCCCceEEEEEeCcchhccc--CchHHHHHhccCCCCCCcEEEEEEECC
Q 010136 228 LYSQKLHSSVMKMMLIIADELDYLITR--DRAVLHDLFMLTTFPFSRFILIGIANA 281 (517)
Q Consensus 228 ~~~~~~~~~~~~~~vI~iDEiD~L~~~--~~~~L~~l~~~~~~~~~~v~lI~ian~ 281 (517)
+ .++.+|||||++.+... .++.|+.+++...... .+|.++|.
T Consensus 157 l---------~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~---s~IitSn~ 200 (254)
T PRK06526 157 L---------GRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERA---SLIVTSNK 200 (254)
T ss_pred h---------ccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcC---CEEEEcCC
Confidence 1 23569999999988543 3467888886533222 25555775
No 257
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.40 E-value=1.8e-06 Score=85.57 Aligned_cols=122 Identities=18% Similarity=0.197 Sum_probs=70.7
Q ss_pred CcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHH
Q 010136 128 CREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILL 207 (517)
Q Consensus 128 gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~ 207 (517)
++...+.....|+.....+....++||+|++|||||+++.++++++... | ..+.++... .++..+..
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~----g---~~v~~~~~~------~l~~~lk~ 201 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK----G---VSSTLLHFP------EFIRELKN 201 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc----C---CCEEEEEHH------HHHHHHHH
Confidence 3444455556666655444456799999999999999999999998742 3 346666553 34455544
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCc---hHHHHHhccCCCCCCcEEEEEEEC
Q 010136 208 KLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDR---AVLHDLFMLTTFPFSRFILIGIAN 280 (517)
Q Consensus 208 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~---~~L~~l~~~~~~~~~~v~lI~ian 280 (517)
.+.. .. +...+. .-...-||||||+..-..... ++|..+++.-... +...|.+||
T Consensus 202 ~~~~-------~~----~~~~l~-----~l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~--~~~ti~TSN 259 (306)
T PRK08939 202 SISD-------GS----VKEKID-----AVKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQE--ELPTFFTSN 259 (306)
T ss_pred HHhc-------Cc----HHHHHH-----HhcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHC--CCeEEEECC
Confidence 4421 11 122222 112456999999976543322 4555565542111 223444567
No 258
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=98.38 E-value=2.4e-05 Score=78.70 Aligned_cols=170 Identities=16% Similarity=0.133 Sum_probs=96.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHH----HHHHHHHHHhCCCCCCC------
Q 010136 147 EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTS----EIFSKILLKLQPRKKLN------ 216 (517)
Q Consensus 147 ~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~----~i~~~i~~~l~~~~~~~------ 216 (517)
..+..+.|+|+-|+|||++++.+.+.+... ....+.++++|+..+.... .++..|..++.......
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~----~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 93 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKED----NKEKYIFIYFNAWEYDGEDDLWASFLEELFDQLEKHFGSKKIKLYA 93 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcc----cccceeeEEEccccCCCcchHHHHHHHHHHHHHHHhcCccchhHHH
Confidence 356688999999999999999998888754 1122578999999887643 34555555543211100
Q ss_pred ------------------CCCC------------------------------------HHHHHHHHHHh--hhccCCCce
Q 010136 217 ------------------GSTS------------------------------------PLQYLQNLYSQ--KLHSSVMKM 240 (517)
Q Consensus 217 ------------------~~~~------------------------------------~~~~l~~~~~~--~~~~~~~~~ 240 (517)
.... ....+.+++.+ ........+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 173 (325)
T PF07693_consen 94 KKKLKSLKIKFKIKINLSKAIPLALIGLPALILAVAIAKLKAELKNAFKSLEEKFLKKLKKEVEELISKIKKKLKESKKR 173 (325)
T ss_pred hhhhhhhhceeeeeeecceeehHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhHHHHHHHHHHHHhhhcCCce
Confidence 0000 00011111111 122235678
Q ss_pred EEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCCCcchhhcc------------cccccCCCceEEEeCCCC
Q 010136 241 MLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAIDLADRFLP------------RLQSMNCKPLVVTFRAYS 308 (517)
Q Consensus 241 ~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~------------~l~sr~~~~~~i~f~p~~ 308 (517)
.||||||+|++.......+..++...- ...++++|.+.+..-+...+.. ..... +....+.+|+++
T Consensus 174 iViiIDdLDR~~~~~i~~~l~~ik~~~-~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeK-iiq~~~~lP~~~ 251 (325)
T PF07693_consen 174 IVIIIDDLDRCSPEEIVELLEAIKLLL-DFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEK-IIQVPFSLPPPS 251 (325)
T ss_pred EEEEEcchhcCCcHHHHHHHHHHHHhc-CCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHh-hcCeEEEeCCCC
Confidence 999999999996654333333333211 1246666665553211111111 11122 334578999999
Q ss_pred HHHHHHHHHHHHhh
Q 010136 309 KDQIIRILQERLME 322 (517)
Q Consensus 309 ~~e~~~IL~~rl~~ 322 (517)
..++..++...+..
T Consensus 252 ~~~~~~~~~~~~~~ 265 (325)
T PF07693_consen 252 PSDLERYLNELLES 265 (325)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888653
No 259
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.37 E-value=9e-08 Score=87.76 Aligned_cols=46 Identities=26% Similarity=0.380 Sum_probs=31.1
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
.+++|++.....+.-. ..+ ..+++|+||||||||++++.+...|..
T Consensus 3 ~dI~GQe~aKrAL~iA----AaG--~h~lLl~GppGtGKTmlA~~l~~lLP~ 48 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIA----AAG--GHHLLLIGPPGTGKTMLARRLPSLLPP 48 (206)
T ss_dssp CCSSSTHHHHHHHHHH----HHC--C--EEEES-CCCTHHHHHHHHHHCS--
T ss_pred hhhcCcHHHHHHHHHH----HcC--CCCeEEECCCCCCHHHHHHHHHHhCCC
Confidence 4678888755444433 332 579999999999999999999877764
No 260
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.32 E-value=3.9e-06 Score=80.91 Aligned_cols=106 Identities=19% Similarity=0.237 Sum_probs=66.9
Q ss_pred cHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHH
Q 010136 129 REDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLK 208 (517)
Q Consensus 129 Re~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~ 208 (517)
+.+.+..+..+....- ...+++|+|+||||||+++-++++++... | +.+.+++..+ ++..|...
T Consensus 88 ~~~~l~~~~~~~~~~~---~~~nl~l~G~~G~GKThLa~Ai~~~l~~~----g---~sv~f~~~~e------l~~~Lk~~ 151 (254)
T COG1484 88 DKKALEDLASLVEFFE---RGENLVLLGPPGVGKTHLAIAIGNELLKA----G---ISVLFITAPD------LLSKLKAA 151 (254)
T ss_pred hHHHHHHHHHHHHHhc---cCCcEEEECCCCCcHHHHHHHHHHHHHHc----C---CeEEEEEHHH------HHHHHHHH
Confidence 4455555555544432 67899999999999999999999998732 2 4677777644 44555544
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC--chHHHHHhcc
Q 010136 209 LQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD--RAVLHDLFML 265 (517)
Q Consensus 209 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~--~~~L~~l~~~ 265 (517)
... ......|.+.+. ..-||||||+-...... .+.+.+++..
T Consensus 152 ~~~-------~~~~~~l~~~l~--------~~dlLIiDDlG~~~~~~~~~~~~~q~I~~ 195 (254)
T COG1484 152 FDE-------GRLEEKLLRELK--------KVDLLIIDDIGYEPFSQEEADLLFQLISR 195 (254)
T ss_pred Hhc-------CchHHHHHHHhh--------cCCEEEEecccCccCCHHHHHHHHHHHHH
Confidence 422 111333444333 34699999998875442 3555555443
No 261
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.31 E-value=5.6e-06 Score=86.00 Aligned_cols=235 Identities=16% Similarity=0.138 Sum_probs=130.5
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhccC--------CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCC
Q 010136 122 APSTIVCREDEQKKVLEFCKKNLEEE--------KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCT 193 (517)
Q Consensus 122 ~p~~l~gRe~e~~~l~~~L~~~l~~~--------~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~ 193 (517)
+.+.++|.+....-|.-.|....... .--+++|+|.|||||+-++++++.-+. +-+|+++.
T Consensus 343 l~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsP-----------R~vYtsGk 411 (764)
T KOG0480|consen 343 LFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSP-----------RSVYTSGK 411 (764)
T ss_pred hCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCC-----------cceEecCc
Confidence 44578898887666655554332211 123899999999999999999876543 46787775
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHh-hhccCCCceEEEEEeCcchhcccCchHHHHHhccCCC----
Q 010136 194 SLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQ-KLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF---- 268 (517)
Q Consensus 194 ~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~---- 268 (517)
.-+...- -..+... ...+. -.++. ..+ -...-|-.|||+|.+..++|-+|.+.++--+.
T Consensus 412 aSSaAGL-----TaaVvkD--~esgd-------f~iEAGALm--LADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaK 475 (764)
T KOG0480|consen 412 ASSAAGL-----TAAVVKD--EESGD-------FTIEAGALM--LADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAK 475 (764)
T ss_pred ccccccc-----eEEEEec--CCCCc-------eeeecCcEE--EccCceEEechhcccChHhHHHHHHHHHhheehhee
Confidence 5322110 0000000 00000 00110 001 11234789999999998888888888765221
Q ss_pred ------CCCcEEEEEEECCCC--------cchh--hcccccccCCCceEEEeCCCCHHHHHHHHHHHHh-----------
Q 010136 269 ------PFSRFILIGIANAID--------LADR--FLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLM----------- 321 (517)
Q Consensus 269 ------~~~~v~lI~ian~~~--------~~~~--l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~----------- 321 (517)
-+.+-.+|+++|++. +.+. +.+.+.|| |..--|.+...++..=..|-.+.+.
T Consensus 476 AGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSR-FDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~ 554 (764)
T KOG0480|consen 476 AGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSR-FDLFFILLDDCNEVVDYAIARHILDLHRGIDDATER 554 (764)
T ss_pred cceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhh-hcEEEEEecCCchHHHHHHHHHHHHHhccccccccc
Confidence 124556778888763 2222 35778888 6444444444443333333333221
Q ss_pred -----------------hhccCCCChhHHHHHHHHHHHHh-----C--------CHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010136 322 -----------------ELSYIVFQPQALELCARKVAAAS-----G--------DMRKALSVCRSAIEILEAEMRESVSK 371 (517)
Q Consensus 322 -----------------~~~~~~~~~~ai~~ia~~~~~~~-----G--------d~R~al~ll~~A~~~a~~~~~~~~~~ 371 (517)
.+. ..++.++-+.+.+++-... | ..|..-.+.|.+-.+|..+-.+
T Consensus 555 ~~~~~~e~vrkYi~yAR~~~-P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~d---- 629 (764)
T KOG0480|consen 555 VCVYTLEQVRKYIRYARNFK-PKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRD---- 629 (764)
T ss_pred cccccHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhh----
Confidence 111 3455555555555443211 1 2455445555555555555554
Q ss_pred cccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccCh
Q 010136 372 MNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSP 413 (517)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~ 413 (517)
.||.+|+.+|+.-+..+.
T Consensus 630 ------------------------evt~~~v~ea~eLlk~Si 647 (764)
T KOG0480|consen 630 ------------------------EVTKEDVEEAVELLKKSI 647 (764)
T ss_pred ------------------------hccHHHHHHHHHHHHhhh
Confidence 799999999998777664
No 262
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.5e-06 Score=88.26 Aligned_cols=44 Identities=20% Similarity=0.331 Sum_probs=32.3
Q ss_pred CCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 125 TIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 125 ~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
++.|++.....+.-. .. .+.+++++||||||||++++.+-.-|.
T Consensus 180 DV~GQ~~AKrAleiA----AA--GgHnLl~~GpPGtGKTmla~Rl~~lLP 223 (490)
T COG0606 180 DVKGQEQAKRALEIA----AA--GGHNLLLVGPPGTGKTMLASRLPGLLP 223 (490)
T ss_pred hhcCcHHHHHHHHHH----Hh--cCCcEEEecCCCCchHHhhhhhcccCC
Confidence 678877755444333 22 467999999999999999999865543
No 263
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.30 E-value=2.1e-06 Score=90.33 Aligned_cols=211 Identities=16% Similarity=0.178 Sum_probs=125.0
Q ss_pred CCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHH
Q 010136 125 TIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSK 204 (517)
Q Consensus 125 ~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~ 204 (517)
.++|....+..+...+.... .....++|+|.+||||+++++.+-..... ..-.|+.+||..... ..+
T Consensus 140 ~lig~s~~~~~~~~~i~~~~--~~~~~vli~ge~g~gk~~~a~~ih~~s~~-------~~~~~i~~~c~~~~~-~~~--- 206 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVA--PSEATVLIHGDSGTGKELVARAIHASSAR-------SEKPLVTLNCAALNE-SLL--- 206 (441)
T ss_pred ceEecCHHHHHHHHHHhhcc--CCCCeEEEEecCCCCHHHHHHHHHHcCCC-------CCCCeeeeeCCCCCH-HHH---
Confidence 35666666666655554332 34578999999999999999997543221 113699999998642 222
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCC--------CCCcEEEE
Q 010136 205 ILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF--------PFSRFILI 276 (517)
Q Consensus 205 i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~--------~~~~v~lI 276 (517)
...+.+............ -...+. .....+||||||+.|....|..|..+++.... ....+-+|
T Consensus 207 -~~~lfg~~~~~~~~~~~~-~~g~~~------~a~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii 278 (441)
T PRK10365 207 -ESELFGHEKGAFTGADKR-REGRFV------EADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLI 278 (441)
T ss_pred -HHHhcCCCCCCcCCCCcC-CCCcee------ECCCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEE
Confidence 223322221110000000 000111 12345799999999988888777777654221 11345677
Q ss_pred EEECCCCcchh-----hcccccccCCCceEEEeCCCCH--HHHHHHHHHHHhhh------ccCCCChhHHHHHHHHHHHH
Q 010136 277 GIANAIDLADR-----FLPRLQSMNCKPLVVTFRAYSK--DQIIRILQERLMEL------SYIVFQPQALELCARKVAAA 343 (517)
Q Consensus 277 ~ian~~~~~~~-----l~~~l~sr~~~~~~i~f~p~~~--~e~~~IL~~rl~~~------~~~~~~~~ai~~ia~~~~~~ 343 (517)
++++. ++... +.+.+..+ +....|.++|+.. +++..++...+..+ ....+++++++.+... ..
T Consensus 279 ~~t~~-~~~~~~~~~~~~~~l~~~-l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~--~w 354 (441)
T PRK10365 279 AATHR-DLAAEVNAGRFRQDLYYR-LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHY--DW 354 (441)
T ss_pred EeCCC-CHHHHHHcCCchHHHHHH-hccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC--CC
Confidence 76653 32222 23333334 4456888888853 46666665555422 1134899999998763 35
Q ss_pred hCCHHHHHHHHHHHHHH
Q 010136 344 SGDMRKALSVCRSAIEI 360 (517)
Q Consensus 344 ~Gd~R~al~ll~~A~~~ 360 (517)
.|++|...+++++|+..
T Consensus 355 pgN~reL~~~~~~~~~~ 371 (441)
T PRK10365 355 PGNIRELENAVERAVVL 371 (441)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 89999999999998754
No 264
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=98.29 E-value=0.00029 Score=71.93 Aligned_cols=80 Identities=14% Similarity=0.257 Sum_probs=61.0
Q ss_pred CCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCC---C----C
Q 010136 125 TIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSL---T----N 197 (517)
Q Consensus 125 ~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~---~----s 197 (517)
-.+||+.+++.|...|.. +..+.+..-+|.|.-|+|||++++.+.....+ .+ +-+.+++.+.. . .
T Consensus 26 ~~VGr~~e~~~l~~~l~~-v~~G~s~~kfi~G~YGsGKTf~l~~i~~~A~~----~~---fvvs~v~ls~e~~lh~~~g~ 97 (416)
T PF10923_consen 26 IAVGREREIEALDRDLDR-VADGGSSFKFIRGEYGSGKTFFLRLIRERALE----KG---FVVSEVDLSPERPLHGTGGQ 97 (416)
T ss_pred eeechHHHHHHHHHHHHH-HhCCCCeEEEEEeCCCCcHHHHHHHHHHHHHH----cC---CEEEEEecCCCccccccccc
Confidence 479999999999999876 55677778999999999999999998765443 33 45677766652 2 3
Q ss_pred HHHHHHHHHHHhCCC
Q 010136 198 TSEIFSKILLKLQPR 212 (517)
Q Consensus 198 ~~~i~~~i~~~l~~~ 212 (517)
...+|+.|...|...
T Consensus 98 ~~~~Yr~l~~nL~t~ 112 (416)
T PF10923_consen 98 LEALYRELMRNLSTK 112 (416)
T ss_pred HHHHHHHHHHhcCCC
Confidence 445888888888643
No 265
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.28 E-value=4.3e-05 Score=87.91 Aligned_cols=200 Identities=13% Similarity=0.142 Sum_probs=114.7
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCC-CCCCHH
Q 010136 121 TAPSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCT-SLTNTS 199 (517)
Q Consensus 121 ~~p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~-~~~s~~ 199 (517)
..+..++.|..-.+.+ .. ....+.++|+||+|.|||+++..++... + .+++++.. ...++.
T Consensus 11 ~~~~~~~~R~rl~~~l----~~---~~~~~~~~v~apaG~GKTtl~~~~~~~~-------~----~~~w~~l~~~d~~~~ 72 (903)
T PRK04841 11 VRLHNTVVRERLLAKL----SG---ANNYRLVLVTSPAGYGKTTLISQWAAGK-------N----NLGWYSLDESDNQPE 72 (903)
T ss_pred CCccccCcchHHHHHH----hc---ccCCCeEEEECCCCCCHHHHHHHHHHhC-------C----CeEEEecCcccCCHH
Confidence 3456788888755444 32 1346789999999999999999987432 1 36677765 335667
Q ss_pred HHHHHHHHHhCCCCCCC----------CC-CCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC-chHHHHHhccCC
Q 010136 200 EIFSKILLKLQPRKKLN----------GS-TSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD-RAVLHDLFMLTT 267 (517)
Q Consensus 200 ~i~~~i~~~l~~~~~~~----------~~-~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~-~~~L~~l~~~~~ 267 (517)
.++..++..+....... .+ ......+..++.. ......+++||||+++.+.... .+.|..|++..
T Consensus 73 ~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~- 149 (903)
T PRK04841 73 RFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIE--LADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQ- 149 (903)
T ss_pred HHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHH--HhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhC-
Confidence 78888888884221110 01 1112233334431 1234678999999999985433 24566666542
Q ss_pred CCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeC--CCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhC
Q 010136 268 FPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFR--AYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASG 345 (517)
Q Consensus 268 ~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~--p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~G 345 (517)
+ ..+.+|.++.... +-. ..++.-+ -...+|... +++.+|..+.+..++.. .++++.++.+.+ .+.|
T Consensus 150 -~-~~~~lv~~sR~~~-~~~-~~~l~~~-~~~~~l~~~~l~f~~~e~~~ll~~~~~~----~~~~~~~~~l~~---~t~G 217 (903)
T PRK04841 150 -P-ENLTLVVLSRNLP-PLG-IANLRVR-DQLLEIGSQQLAFDHQEAQQFFDQRLSS----PIEAAESSRLCD---DVEG 217 (903)
T ss_pred -C-CCeEEEEEeCCCC-CCc-hHhHHhc-CcceecCHHhCCCCHHHHHHHHHhccCC----CCCHHHHHHHHH---HhCC
Confidence 2 3444444565421 111 1222222 111234444 89999999999866542 467777776655 4556
Q ss_pred CHHHHHHHH
Q 010136 346 DMRKALSVC 354 (517)
Q Consensus 346 d~R~al~ll 354 (517)
.+ .++.++
T Consensus 218 wp-~~l~l~ 225 (903)
T PRK04841 218 WA-TALQLI 225 (903)
T ss_pred hH-HHHHHH
Confidence 65 444443
No 266
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.25 E-value=0.00022 Score=73.83 Aligned_cols=131 Identities=18% Similarity=0.192 Sum_probs=81.1
Q ss_pred HHHHhhcCcCCCCCCCCCcHHHHHHHHHHHHHhhcc--------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCC
Q 010136 111 SAVREALHVSTAPSTIVCREDEQKKVLEFCKKNLEE--------EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGL 182 (517)
Q Consensus 111 ~~~~~~l~~~~~p~~l~gRe~e~~~l~~~L~~~l~~--------~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~ 182 (517)
...++.+...++|..+..++..++.+.+.|...+.. ..+..++|+|++|+||||++..++..+.. .+
T Consensus 49 ~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~~~~~p~vI~lvG~~GsGKTTtaakLA~~L~~----~g- 123 (437)
T PRK00771 49 KSIKERALEEEPPKGLTPREHVIKIVYEELVKLLGEETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKK----KG- 123 (437)
T ss_pred HHHHHHHhcccccccCCcHHHHHHHHHHHHHHHhCCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHH----cC-
Confidence 444444445566777777777777777777665543 23567999999999999999999987764 23
Q ss_pred CCceEEEEeCCCCCC-HHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcc
Q 010136 183 QQPEVFSINCTSLTN-TSEIFSKILLKLQPRKKLN-GSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLIT 253 (517)
Q Consensus 183 ~~~~~v~vn~~~~~s-~~~i~~~i~~~l~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~ 253 (517)
..+..++|..+.. ..+-+..++..++...... ....+...+...+... . ..-+|+||.+-.+..
T Consensus 124 --~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~----~-~~DvVIIDTAGr~~~ 189 (437)
T PRK00771 124 --LKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF----K-KADVIIVDTAGRHAL 189 (437)
T ss_pred --CeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh----h-cCCEEEEECCCcccc
Confidence 2466666655432 2344555666665432221 1233445555555421 1 126899999977643
No 267
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.22 E-value=2.1e-05 Score=82.47 Aligned_cols=166 Identities=19% Similarity=0.180 Sum_probs=94.2
Q ss_pred CCCCcHHHHHHHHHHHHHhhcc--CCC------CeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCC
Q 010136 125 TIVCREDEQKKVLEFCKKNLEE--EKA------GSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLT 196 (517)
Q Consensus 125 ~l~gRe~e~~~l~~~L~~~l~~--~~~------~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~ 196 (517)
.+++.|+..+-+.-.|...-.. ..+ -+||++|.||||||.+++++.+-+. .-+|.++..-.
T Consensus 430 sIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~p-----------Rg~yTSGkGsS 498 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLP-----------RGVYTSGKGSS 498 (804)
T ss_pred hhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCC-----------cceeecCCccc
Confidence 5677777665555444332111 111 3899999999999999999987654 34666664421
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCC---------
Q 010136 197 NTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTT--------- 267 (517)
Q Consensus 197 s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~--------- 267 (517)
.... .........++ +. ++....+ --...-|-+|||||.|....+.+|++.++--+
T Consensus 499 avGL-------TayVtrd~dtk----ql---VLesGAL-VLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII 563 (804)
T KOG0478|consen 499 AVGL-------TAYVTKDPDTR----QL---VLESGAL-VLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGII 563 (804)
T ss_pred hhcc-------eeeEEecCccc----ee---eeecCcE-EEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhccee
Confidence 1100 00000000000 00 0000000 01123477899999998888889988876522
Q ss_pred -CCCCcEEEEEEECCCC--------cchh--hcccccccCCCceEEEeCCCCHHHHHHHHH
Q 010136 268 -FPFSRFILIGIANAID--------LADR--FLPRLQSMNCKPLVVTFRAYSKDQIIRILQ 317 (517)
Q Consensus 268 -~~~~~v~lI~ian~~~--------~~~~--l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~ 317 (517)
.-+.+..|++++|..+ ..+. +.|.|.|| |...-+.|.+.+...=+.+..
T Consensus 564 ~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSR-FDLIylllD~~DE~~Dr~La~ 623 (804)
T KOG0478|consen 564 ASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSR-FDLIFLLLDKPDERSDRRLAD 623 (804)
T ss_pred eeccccceeeeeeccccccCCCCCchhhccCCChhhhhh-hcEEEEEecCcchhHHHHHHH
Confidence 2356788999999654 2232 35888898 866666677776553344433
No 268
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.21 E-value=7.5e-06 Score=75.98 Aligned_cols=106 Identities=19% Similarity=0.211 Sum_probs=59.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQN 227 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~ 227 (517)
..+..+|.|+||||||++++.+...+... + ..++.+.. . ......+.+..+.. ...+..
T Consensus 17 ~~~~~~l~G~aGtGKT~~l~~~~~~~~~~----g---~~v~~~ap-T----~~Aa~~L~~~~~~~---------a~Ti~~ 75 (196)
T PF13604_consen 17 GDRVSVLQGPAGTGKTTLLKALAEALEAA----G---KRVIGLAP-T----NKAAKELREKTGIE---------AQTIHS 75 (196)
T ss_dssp TCSEEEEEESTTSTHHHHHHHHHHHHHHT----T-----EEEEES-S----HHHHHHHHHHHTS----------EEEHHH
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHHHhC----C---CeEEEECC-c----HHHHHHHHHhhCcc---------hhhHHH
Confidence 44678899999999999999988777652 2 23444433 2 22223344444211 112333
Q ss_pred HHHhhhcc------CCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEE
Q 010136 228 LYSQKLHS------SVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIG 277 (517)
Q Consensus 228 ~~~~~~~~------~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ 277 (517)
++...... ......+|||||+..+.. ..+..+++.....+.+++++|
T Consensus 76 ~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~---~~~~~ll~~~~~~~~klilvG 128 (196)
T PF13604_consen 76 FLYRIPNGDDEGRPELPKKDVLIVDEASMVDS---RQLARLLRLAKKSGAKLILVG 128 (196)
T ss_dssp HTTEECCEECCSSCC-TSTSEEEESSGGG-BH---HHHHHHHHHS-T-T-EEEEEE
T ss_pred HHhcCCcccccccccCCcccEEEEecccccCH---HHHHHHHHHHHhcCCEEEEEC
Confidence 33321000 012335999999998853 556777777655667888887
No 269
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.20 E-value=0.00019 Score=80.78 Aligned_cols=303 Identities=14% Similarity=0.125 Sum_probs=166.1
Q ss_pred CCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCC--CCHH----
Q 010136 126 IVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSL--TNTS---- 199 (517)
Q Consensus 126 l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~--~s~~---- 199 (517)
++||+.|++.|...+.+... +....+++.|.+|.|||.+++.|.+.+.+.. -.++.--|..+ ..+.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~-g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~-------~~~i~~~f~q~~~~ipl~~lv 73 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSK-GRGEVVLVAGESGIGKSALVNEVHKPITQQR-------GYFIKGKFDQFERNIPLSPLV 73 (849)
T ss_pred CCchHhHHHHHHHHHHHHhC-CCeEEEEEeecCCCcHHHHHHHHHHHHhccc-------eeeeHhhcccccCCCchHHHH
Confidence 78999999999999998664 4555899999999999999999998876531 12333333322 1222
Q ss_pred HHHHHHHHHhCCCCCC--------------C---------------CC----------CCHHH----HHHHHHHhhhccC
Q 010136 200 EIFSKILLKLQPRKKL--------------N---------------GS----------TSPLQ----YLQNLYSQKLHSS 236 (517)
Q Consensus 200 ~i~~~i~~~l~~~~~~--------------~---------------~~----------~~~~~----~l~~~~~~~~~~~ 236 (517)
+.++.+..++...... . .| ..... .+...+. ....
T Consensus 74 q~~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~--~~~~ 151 (849)
T COG3899 74 QAFRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQ--VFTA 151 (849)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHH--HHHh
Confidence 2344444443111100 0 00 00000 1111111 2224
Q ss_pred CCceEEEEEeCcchhcccCchHHHHHhccCC--CCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHH
Q 010136 237 VMKMMLIIADELDYLITRDRAVLHDLFMLTT--FPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIR 314 (517)
Q Consensus 237 ~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~--~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~ 314 (517)
..+|.|+|+|++++.....-+.|..+++... ....+-+....++ ...+.+-.++. -....|.+.|++..+...
T Consensus 152 ~~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~----~~~~~~~~~~~-~~i~~I~L~PL~~~d~~~ 226 (849)
T COG3899 152 EEHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPL----RPTLGEILKSA-TNITTITLAPLSRADTNQ 226 (849)
T ss_pred ccCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCc----cchhhHHhhcC-CceeEEecCcCchhhHHH
Confidence 6679999999999997777677777765542 0000011111111 11122222232 455899999999999999
Q ss_pred HHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--HHHHHHhhhhccccccccccchhhhhhhhhhc
Q 010136 315 ILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRSAIEI--LEAEMRESVSKMNSASAEQGLFDQQAASAFEF 392 (517)
Q Consensus 315 IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~~--a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (517)
++...+... .....+..+.+.+ ...|.+=.+-.+++...+. ...+...- ....+..
T Consensus 227 lV~~~l~~~--~~~~~p~~~~i~~---kt~GnPfFi~e~lk~l~~~~~i~f~~~~~---------~w~~~~~-------- 284 (849)
T COG3899 227 LVAATLGCT--KLLPAPLLELIFE---KTKGNPFFIEEFLKALYEEGLLVFNFDTG---------AWQCSIA-------- 284 (849)
T ss_pred HHHHHhCCc--ccccchHHHHHHH---HhcCCCccHHHHHHHHHhCCeeEecCCCc---------ceeccHH--------
Confidence 999988642 2344555666655 4566655555555554421 00010000 0000000
Q ss_pred cCccccHHHHHHHHHHhccChhHHHhccCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCChHHHHHH
Q 010136 393 FNSQVRVDHMAVALSNTFKSPVVDTIKSLPQHQQILLCSAVKFFRGGKKDMTVGELNKSYMNICKTSLIPPVGTLEFFSM 472 (517)
Q Consensus 393 ~~~~Vt~~~v~~a~~~~~~~~~~~~i~~L~~~~k~iL~al~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~ 472 (517)
.|..-....++. ..+...++.||...+.||..+.-+ | ..++.+.|- .+++. ....+...+
T Consensus 285 ---~i~~~~~~~~vv----~~l~~rl~kL~~~t~~Vl~~AA~i---G-~~F~l~~La----~l~~~-----~~~~~a~~l 344 (849)
T COG3899 285 ---SLGILATTDAVV----EFLAARLQKLPGTTREVLKAAACI---G-NRFDLDTLA----ALAED-----SPALEAAAL 344 (849)
T ss_pred ---hcCCchhhHHHH----HHHHHHHhcCCHHHHHHHHHHHHh---C-ccCCHHHHH----HHHhh-----chHHHHHHH
Confidence 111111111110 113456889999999999866543 2 456666553 33432 455677788
Q ss_pred HHHHhhcCceeec
Q 010136 473 CRVLHDQGVLKVG 485 (517)
Q Consensus 473 ~~~L~~~glI~~~ 485 (517)
+..|...+++...
T Consensus 345 ~~al~e~lI~~~~ 357 (849)
T COG3899 345 LDALQEGLILPLS 357 (849)
T ss_pred HHHhHhhceeccc
Confidence 8888888888643
No 270
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.19 E-value=1.8e-05 Score=80.62 Aligned_cols=180 Identities=12% Similarity=0.118 Sum_probs=92.1
Q ss_pred CcHHHHHHHHHHHHHhhcc-------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHH
Q 010136 128 CREDEQKKVLEFCKKNLEE-------EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSE 200 (517)
Q Consensus 128 gRe~e~~~l~~~L~~~l~~-------~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~ 200 (517)
..+...+.+...|...+.. ..+..++++||+|+||||++..++..+.......+. .+.++.+++......++
T Consensus 146 ~~~~v~~~l~~~l~~~i~~~~~~~~~~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~-~V~lit~Dt~R~aa~eQ 224 (388)
T PRK12723 146 DYDKVRDSVIIYIAKTIKCSGSIIDNLKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSL-NIKIITIDNYRIGAKKQ 224 (388)
T ss_pred CHHHHHHHHHHHHHHHhhccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCC-eEEEEeccCccHHHHHH
Confidence 3444444455555443321 235689999999999999999999877643322232 24455555544333333
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCc--hHHHHHhccCCCCCCcEEEEEE
Q 010136 201 IFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDR--AVLHDLFMLTTFPFSRFILIGI 278 (517)
Q Consensus 201 i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~--~~L~~l~~~~~~~~~~v~lI~i 278 (517)
+...++.++.+.. ... ....+...+.. ....-+|+||++..+..... ..|..+++... +...+.++.-
T Consensus 225 -L~~~a~~lgvpv~--~~~-~~~~l~~~L~~-----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~-~~~e~~LVls 294 (388)
T PRK12723 225 -IQTYGDIMGIPVK--AIE-SFKDLKEEITQ-----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACG-RDAEFHLAVS 294 (388)
T ss_pred -HHHHhhcCCcceE--eeC-cHHHHHHHHHH-----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcC-CCCeEEEEEc
Confidence 3444444433221 112 24455555541 23457999999998854321 22333433222 2223333333
Q ss_pred ECC-CCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHH
Q 010136 279 ANA-IDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERL 320 (517)
Q Consensus 279 an~-~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl 320 (517)
++. .+-...+..+... ++...+.|.-+|.....-.+-..+
T Consensus 295 at~~~~~~~~~~~~~~~--~~~~~~I~TKlDet~~~G~~l~~~ 335 (388)
T PRK12723 295 STTKTSDVKEIFHQFSP--FSYKTVIFTKLDETTCVGNLISLI 335 (388)
T ss_pred CCCCHHHHHHHHHHhcC--CCCCEEEEEeccCCCcchHHHHHH
Confidence 332 1111122222221 445788888888766554444333
No 271
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.18 E-value=7.5e-05 Score=83.95 Aligned_cols=205 Identities=15% Similarity=0.109 Sum_probs=130.5
Q ss_pred CCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHH
Q 010136 127 VCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKIL 206 (517)
Q Consensus 127 ~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~ 206 (517)
+|.+.-++.+...|.. ...+.+-|+|..|+||||+++.+.+..... ..++. .+++|..+..-+...+...|+
T Consensus 161 VG~e~~~~kl~~~L~~----d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v--~~~Fd--~~iWV~VSk~f~~~~iq~~Il 232 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLME----DDVGIVGIYGMGGVGKTTLARQIFNKFDEV--GNHFD--GVIWVVVSKEFTTRKIQQTIL 232 (889)
T ss_pred ccHHHHHHHHHHHhcc----CCCCEEEEECCCcccHHHHHHHHhcccchh--cccCc--eEEEEEEcccccHHhHHHHHH
Confidence 9999988877777554 344789999999999999999998876531 12222 467777777778899999999
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCC-CcEEEEEEECCCCcc
Q 010136 207 LKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPF-SRFILIGIANAIDLA 285 (517)
Q Consensus 207 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~-~~v~lI~ian~~~~~ 285 (517)
..++.....+..... ..+...+.+ .+ ..+..+|++|+|-.= .....+..+.... ...-++.+|...+
T Consensus 233 ~~l~~~~~~~~~~~~-~~~~~~i~~-~L--~~krfllvLDDIW~~------~dw~~I~~~~p~~~~g~KvvlTTRs~~-- 300 (889)
T KOG4658|consen 233 ERLGLLDEEWEDKEE-DELASKLLN-LL--EGKRFLLVLDDIWEE------VDWDKIGVPFPSRENGSKVVLTTRSEE-- 300 (889)
T ss_pred HHhccCCcccchhhH-HHHHHHHHH-Hh--ccCceEEEEeccccc------ccHHhcCCCCCCccCCeEEEEEeccHh--
Confidence 999765544433221 222222221 11 356789999998532 1133333332121 2244555566422
Q ss_pred hhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 010136 286 DRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRSAI 358 (517)
Q Consensus 286 ~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~ 358 (517)
+-.+.... . ..+...-++.++.-+.++..+-... .-+...++.+|+.++...|++..|+.++-.+.
T Consensus 301 --V~~~~m~~-~--~~~~v~~L~~~eaW~LF~~~v~~~~--~~~~~~i~~lak~v~~kC~GLPLAl~viG~~m 366 (889)
T KOG4658|consen 301 --VCGRAMGV-D--YPIEVECLTPEEAWDLFQKKVGPNT--LGSHPDIEELAKEVAEKCGGLPLALNVLGGLL 366 (889)
T ss_pred --hhhccccC-C--ccccccccCccccHHHHHHhhcccc--ccccccHHHHHHHHHHHhCChHHHHHHHHHHh
Confidence 22221111 1 3566777888998888887764221 11112389999999999999999999886655
No 272
>PHA00729 NTP-binding motif containing protein
Probab=98.17 E-value=9.8e-06 Score=75.76 Aligned_cols=30 Identities=23% Similarity=0.231 Sum_probs=25.8
Q ss_pred ccCCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 145 EEEKAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 145 ~~~~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
..+...+++|+|+||||||+++.+++..+.
T Consensus 13 ~~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 13 NNNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred hcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344556899999999999999999999875
No 273
>PRK09183 transposase/IS protein; Provisional
Probab=98.17 E-value=2.6e-06 Score=82.55 Aligned_cols=103 Identities=17% Similarity=0.185 Sum_probs=59.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQN 227 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~ 227 (517)
.+.+++|+||||||||+++.+++..+.. .| ..+.++++.. +...+...... .. +..
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~----~G---~~v~~~~~~~------l~~~l~~a~~~-------~~----~~~ 156 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVR----AG---IKVRFTTAAD------LLLQLSTAQRQ-------GR----YKT 156 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHH----cC---CeEEEEeHHH------HHHHHHHHHHC-------Cc----HHH
Confidence 4678999999999999999999876543 23 2466666432 22222221100 01 222
Q ss_pred HHHhhhccCCCceEEEEEeCcchhcccC--chHHHHHhccCCCCCCcEEEEEEECC
Q 010136 228 LYSQKLHSSVMKMMLIIADELDYLITRD--RAVLHDLFMLTTFPFSRFILIGIANA 281 (517)
Q Consensus 228 ~~~~~~~~~~~~~~vI~iDEiD~L~~~~--~~~L~~l~~~~~~~~~~v~lI~ian~ 281 (517)
.+.. ....+.+++|||++.+.... .+.|+.+++...... . +|.++|.
T Consensus 157 ~~~~----~~~~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~-s--~iiTsn~ 205 (259)
T PRK09183 157 TLQR----GVMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKG-S--MILTSNL 205 (259)
T ss_pred HHHH----HhcCCCEEEEcccccCCCChHHHHHHHHHHHHHHhcC-c--EEEecCC
Confidence 2221 01234699999998865443 346888876643222 2 4555774
No 274
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=7.4e-06 Score=89.99 Aligned_cols=168 Identities=17% Similarity=0.230 Sum_probs=98.2
Q ss_pred CCCCc-HHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHH
Q 010136 125 TIVCR-EDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFS 203 (517)
Q Consensus 125 ~l~gR-e~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~ 203 (517)
.++|| ++++..+.+.|... ..+|-+|.|.||+|||.++..+++.+....-........++.++-..+..
T Consensus 187 Pvigr~deeirRvi~iL~Rr----tk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~a------ 256 (898)
T KOG1051|consen 187 PVIGRHDEEIRRVIEILSRK----TKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVA------ 256 (898)
T ss_pred CccCCchHHHHHHHHHHhcc----CCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhccc------
Confidence 46788 99998888887653 33789999999999999999999887642111101112344444322110
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCch--HH--HHHhccCCCCCCcEEEEEEE
Q 010136 204 KILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRA--VL--HDLFMLTTFPFSRFILIGIA 279 (517)
Q Consensus 204 ~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~--~L--~~l~~~~~~~~~~v~lI~ia 279 (517)
+. .. .......+..+..... ..+..+||||||++.+...... .+ -+++. +......+-+||+|
T Consensus 257 -------Ga--~~-rge~E~rlk~l~k~v~--~~~~gvILfigelh~lvg~g~~~~~~d~~nlLk-p~L~rg~l~~IGat 323 (898)
T KOG1051|consen 257 -------GA--KR-RGEFEERLKELLKEVE--SGGGGVILFLGELHWLVGSGSNYGAIDAANLLK-PLLARGGLWCIGAT 323 (898)
T ss_pred -------Cc--cc-chHHHHHHHHHHHHHh--cCCCcEEEEecceeeeecCCCcchHHHHHHhhH-HHHhcCCeEEEecc
Confidence 00 00 1112444555554211 2557799999999999876533 11 11221 11233448999977
Q ss_pred CCCCcchhh--cccccccCCCceEEEeCCCCHHHHHHHHHH
Q 010136 280 NAIDLADRF--LPRLQSMNCKPLVVTFRAYSKDQIIRILQE 318 (517)
Q Consensus 280 n~~~~~~~l--~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~ 318 (517)
+...+...+ +|.+.+| | +.+.++-++.++...||..
T Consensus 324 T~e~Y~k~iekdPalErr-w--~l~~v~~pS~~~~~~iL~~ 361 (898)
T KOG1051|consen 324 TLETYRKCIEKDPALERR-W--QLVLVPIPSVENLSLILPG 361 (898)
T ss_pred cHHHHHHHHhhCcchhhC-c--ceeEeccCcccchhhhhhh
Confidence 733333322 6888888 7 4556666666666666653
No 275
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.16 E-value=3.4e-06 Score=76.86 Aligned_cols=102 Identities=22% Similarity=0.259 Sum_probs=57.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQN 227 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~ 227 (517)
...+++|+|+||||||+++.++++++... | ..+.|++. .+++..+.... . .....+.+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~----g---~~v~f~~~------~~L~~~l~~~~----~---~~~~~~~~~~ 105 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRK----G---YSVLFITA------SDLLDELKQSR----S---DGSYEELLKR 105 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHT----T-----EEEEEH------HHHHHHHHCCH----C---CTTHCHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccC----C---cceeEeec------Cceeccccccc----c---ccchhhhcCc
Confidence 46789999999999999999999887652 2 35777774 33333333211 1 1221233333
Q ss_pred HHHhhhccCCCceEEEEEeCcchhccc--CchHHHHHhccCCCCCCcEEEEEEECC
Q 010136 228 LYSQKLHSSVMKMMLIIADELDYLITR--DRAVLHDLFMLTTFPFSRFILIGIANA 281 (517)
Q Consensus 228 ~~~~~~~~~~~~~~vI~iDEiD~L~~~--~~~~L~~l~~~~~~~~~~v~lI~ian~ 281 (517)
+. ..-+|||||+...... ..+.|+++++.-.. + + ..|.+||-
T Consensus 106 l~---------~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~-~-~-~tIiTSN~ 149 (178)
T PF01695_consen 106 LK---------RVDLLILDDLGYEPLSEWEAELLFEIIDERYE-R-K-PTIITSNL 149 (178)
T ss_dssp HH---------TSSCEEEETCTSS---HHHHHCTHHHHHHHHH-T---EEEEEESS
T ss_pred cc---------cccEecccccceeeecccccccchhhhhHhhc-c-c-CeEeeCCC
Confidence 32 2358999999765432 23456677665322 2 2 24446774
No 276
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.14 E-value=6.4e-05 Score=73.32 Aligned_cols=211 Identities=18% Similarity=0.194 Sum_probs=125.7
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHH
Q 010136 123 PSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIF 202 (517)
Q Consensus 123 p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~ 202 (517)
.+.+++....++.+...-+.... -...++|.|..||||-.+|+++-..-.+. .-+|+.+||..+.....
T Consensus 203 F~~~v~~S~~mk~~v~qA~k~Am--lDAPLLI~GeTGTGKdLlAkaCH~~S~R~-------~~pFlalNCA~lPe~~a-- 271 (511)
T COG3283 203 FEQIVAVSPKMKHVVEQAQKLAM--LDAPLLITGETGTGKDLLAKACHLASPRH-------SKPFLALNCASLPEDAA-- 271 (511)
T ss_pred hHHHhhccHHHHHHHHHHHHhhc--cCCCeEEecCCCchHHHHHHHHhhcCccc-------CCCeeEeecCCCchhHh--
Confidence 35677777777766665444322 24579999999999999999864332211 13699999999854322
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCC--------CCCCcEE
Q 010136 203 SKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTT--------FPFSRFI 274 (517)
Q Consensus 203 ~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~--------~~~~~v~ 274 (517)
-.++.+...+..+. .-+|+. ...-.+++|||-.+...-|.-|..+++-.+ .....|-
T Consensus 272 ---EsElFG~apg~~gk------~GffE~------AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVR 336 (511)
T COG3283 272 ---ESELFGHAPGDEGK------KGFFEQ------ANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVR 336 (511)
T ss_pred ---HHHHhcCCCCCCCc------cchhhh------ccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEE
Confidence 23343433322221 123431 122367999999998876755555554421 1234688
Q ss_pred EEEEECCCCcchhhc-----ccccccCCCceEEEeCCCCH-----HHHHHHHHHHHh---hhccCCCChhHHHHHHHHHH
Q 010136 275 LIGIANAIDLADRFL-----PRLQSMNCKPLVVTFRAYSK-----DQIIRILQERLM---ELSYIVFQPQALELCARKVA 341 (517)
Q Consensus 275 lI~ian~~~~~~~l~-----~~l~sr~~~~~~i~f~p~~~-----~e~~~IL~~rl~---~~~~~~~~~~ai~~ia~~~~ 341 (517)
||++|. .++.+... ..+.-| +..-.+.++|+-. .-+.+.+..+.. +.+...++++.+.++.++
T Consensus 337 VIcatq-~nL~~lv~~g~fReDLfyR-LNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y-- 412 (511)
T COG3283 337 VICATQ-VNLVELVQKGKFREDLFYR-LNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRY-- 412 (511)
T ss_pred EEeccc-ccHHHHHhcCchHHHHHHH-hheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHc--
Confidence 888554 33332221 111112 3223556666632 333343333443 345578999999998774
Q ss_pred HHhCCHHHHHHHHHHHHHHHHH
Q 010136 342 AASGDMRKALSVCRSAIEILEA 363 (517)
Q Consensus 342 ~~~Gd~R~al~ll~~A~~~a~~ 363 (517)
...|++|..-+.+.+|+.+.+.
T Consensus 413 ~WpGNVRqL~N~iyRA~s~~Eg 434 (511)
T COG3283 413 AWPGNVRQLKNAIYRALTLLEG 434 (511)
T ss_pred CCCccHHHHHHHHHHHHHHhcc
Confidence 5789999999999999876653
No 277
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.11 E-value=0.00024 Score=76.92 Aligned_cols=292 Identities=16% Similarity=0.194 Sum_probs=165.7
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCC-CCCHH
Q 010136 121 TAPSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTS-LTNTS 199 (517)
Q Consensus 121 ~~p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~-~~s~~ 199 (517)
..|...+-|..-+. .|.. +....-++|+-|.|.||||++-..+..... + ..+.++++.+ ..++.
T Consensus 16 ~~~~~~v~R~rL~~----~L~~---~~~~RL~li~APAGfGKttl~aq~~~~~~~-----~---~~v~Wlslde~dndp~ 80 (894)
T COG2909 16 VRPDNYVVRPRLLD----RLRR---ANDYRLILISAPAGFGKTTLLAQWRELAAD-----G---AAVAWLSLDESDNDPA 80 (894)
T ss_pred CCcccccccHHHHH----HHhc---CCCceEEEEeCCCCCcHHHHHHHHHHhcCc-----c---cceeEeecCCccCCHH
Confidence 34566777777443 3333 235678999999999999999988763221 1 3578888765 46789
Q ss_pred HHHHHHHHHhCCCCCCCCC-----------CCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC-chHHHHHhccCC
Q 010136 200 EIFSKILLKLQPRKKLNGS-----------TSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD-RAVLHDLFMLTT 267 (517)
Q Consensus 200 ~i~~~i~~~l~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~-~~~L~~l~~~~~ 267 (517)
.|++.+...++...+.... .+....+..+|.+ +....+|+.+|||+.+.+.... ...|..|++-
T Consensus 81 rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~E--la~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~-- 156 (894)
T COG2909 81 RFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNE--LASYEGPLYLVLDDYHLISDPALHEALRFLLKH-- 156 (894)
T ss_pred HHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHH--HHhhcCceEEEeccccccCcccHHHHHHHHHHh--
Confidence 9999999998643332111 1112244445542 3456778999999999886543 3566666654
Q ss_pred CCCCcEEEEEEECCCCcchhhcccccccCCCceEEEe----CCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHH
Q 010136 268 FPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTF----RAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAA 343 (517)
Q Consensus 268 ~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f----~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~ 343 (517)
...++.+|.+|... +.-...+++-+ ...+.+ -.++.+|..+.+..+.. ..++...++.+.. .+
T Consensus 157 -~P~~l~lvv~SR~r--P~l~la~lRlr---~~llEi~~~~Lrf~~eE~~~fl~~~~~----l~Ld~~~~~~L~~---~t 223 (894)
T COG2909 157 -APENLTLVVTSRSR--PQLGLARLRLR---DELLEIGSEELRFDTEEAAAFLNDRGS----LPLDAADLKALYD---RT 223 (894)
T ss_pred -CCCCeEEEEEeccC--CCCcccceeeh---hhHHhcChHhhcCChHHHHHHHHHcCC----CCCChHHHHHHHh---hc
Confidence 23577888777642 22122222222 112222 24688999999887653 2456666666655 34
Q ss_pred hCCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccChhHHHhccCCH
Q 010136 344 SGDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSPVVDTIKSLPQ 423 (517)
Q Consensus 344 ~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~~~~~i~~L~~ 423 (517)
.|-+ .|+.+.--+. +.+... +... -......+.+.... ..+.+..||.
T Consensus 224 eGW~-~al~L~aLa~----~~~~~~---------~q~~---------------~~LsG~~~~l~dYL---~eeVld~Lp~ 271 (894)
T COG2909 224 EGWA-AALQLIALAL----RNNTSA---------EQSL---------------RGLSGAASHLSDYL---VEEVLDRLPP 271 (894)
T ss_pred ccHH-HHHHHHHHHc----cCCCcH---------HHHh---------------hhccchHHHHHHHH---HHHHHhcCCH
Confidence 5543 2333332222 111100 0000 00111122222222 3577889999
Q ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhcCceeec--cCCceeEE
Q 010136 424 HQQILLCSAVKFFRGGKKDMTVGELNKSYMNICKTSLIPPVGTLEFFSMCRVLHDQGVLKVG--RDDKLKRV 493 (517)
Q Consensus 424 ~~k~iL~al~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~L~~~glI~~~--~~~~~~~~ 493 (517)
..+.+|.....+.. .- -.+|... .+...=..|+++|+.+||--.. ..+.+.+|
T Consensus 272 ~l~~FLl~~svl~~------f~-------~eL~~~L----tg~~ng~amLe~L~~~gLFl~~Ldd~~~Wfry 326 (894)
T COG2909 272 ELRDFLLQTSVLSR------FN-------DELCNAL----TGEENGQAMLEELERRGLFLQRLDDEGQWFRY 326 (894)
T ss_pred HHHHHHHHHHhHHH------hh-------HHHHHHH----hcCCcHHHHHHHHHhCCCceeeecCCCceeeh
Confidence 99999987665421 11 1445543 1222235789999999987643 44444444
No 278
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.09 E-value=6.9e-06 Score=83.07 Aligned_cols=108 Identities=20% Similarity=0.246 Sum_probs=65.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHH
Q 010136 147 EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQ 226 (517)
Q Consensus 147 ~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~ 226 (517)
..+.++||+|++|+|||+++..+...+....+ .-.--..++..+.+.+..... +..+...+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k---------------~R~HFh~Fm~~vh~~l~~~~~---~~~~l~~va 121 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRK---------------RRVHFHEFMLDVHSRLHQLRG---QDDPLPQVA 121 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccc---------------ccccccHHHHHHHHHHHHHhC---CCccHHHHH
Confidence 35789999999999999999998777642110 000113455555555533221 222244444
Q ss_pred HHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECC
Q 010136 227 NLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANA 281 (517)
Q Consensus 227 ~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~ 281 (517)
+.+. ....||+|||++--...+.-.|..||++.- ...+++|+++|.
T Consensus 122 ~~l~-------~~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gvvlVaTSN~ 167 (362)
T PF03969_consen 122 DELA-------KESRLLCFDEFQVTDIADAMILKRLFEALF--KRGVVLVATSNR 167 (362)
T ss_pred HHHH-------hcCCEEEEeeeeccchhHHHHHHHHHHHHH--HCCCEEEecCCC
Confidence 4443 233599999998654444455666666532 357889999996
No 279
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.07 E-value=7.6e-05 Score=70.87 Aligned_cols=126 Identities=15% Similarity=0.191 Sum_probs=77.5
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHH
Q 010136 123 PSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIF 202 (517)
Q Consensus 123 p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~ 202 (517)
...+.-|...+....+.|+.... .....+++.||.|.||+.+++.+...-...+. .. -.|++|||..+..... +
T Consensus 183 ksgiatrnp~fnrmieqierva~-rsr~p~ll~gptgagksflarriyelk~arhq-~s---g~fvevncatlrgd~a-m 256 (531)
T COG4650 183 KSGIATRNPHFNRMIEQIERVAI-RSRAPILLNGPTGAGKSFLARRIYELKQARHQ-FS---GAFVEVNCATLRGDTA-M 256 (531)
T ss_pred HhcccccChHHHHHHHHHHHHHh-hccCCeEeecCCCcchhHHHHHHHHHHHHHHh-cC---CceEEEeeeeecCchH-H
Confidence 33455666666666666655432 23457999999999999999998654322221 11 2699999999876443 3
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhcc
Q 010136 203 SKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFML 265 (517)
Q Consensus 203 ~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~ 265 (517)
+.++..+.+...+. ...-.-++. ....-++|+|||..|....|..|...++.
T Consensus 257 salfghvkgaftga-----~~~r~gllr------sadggmlfldeigelgadeqamllkaiee 308 (531)
T COG4650 257 SALFGHVKGAFTGA-----RESREGLLR------SADGGMLFLDEIGELGADEQAMLLKAIEE 308 (531)
T ss_pred HHHHhhhccccccc-----hhhhhhhhc------cCCCceEehHhhhhcCccHHHHHHHHHHh
Confidence 45555544332211 111222332 22335899999999988888777666554
No 280
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.04 E-value=0.00017 Score=74.35 Aligned_cols=124 Identities=15% Similarity=0.177 Sum_probs=77.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYS 230 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~ 230 (517)
.++|+||.+|||||+++.+.+.+.+ .++|+|--+......-. .+.+..+..
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~----------~~iy~~~~d~~~~~~~l-------------------~d~~~~~~~ 89 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLE----------EIIYINFDDLRLDRIEL-------------------LDLLRAYIE 89 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCc----------ceEEEEecchhcchhhH-------------------HHHHHHHHH
Confidence 8999999999999999776665432 15676655543222211 111222221
Q ss_pred hhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHH
Q 010136 231 QKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKD 310 (517)
Q Consensus 231 ~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~ 310 (517)
.. ..+...||||||+.+-. -+..|..+.+.... ++++.| ++...+.....+.+..| . ..+.+.|++..
T Consensus 90 -~~---~~~~~yifLDEIq~v~~-W~~~lk~l~d~~~~---~v~itg-sss~ll~~~~~~~L~GR-~--~~~~l~PlSF~ 157 (398)
T COG1373 90 -LK---EREKSYIFLDEIQNVPD-WERALKYLYDRGNL---DVLITG-SSSSLLSKEISESLAGR-G--KDLELYPLSFR 157 (398)
T ss_pred -hh---ccCCceEEEecccCchh-HHHHHHHHHccccc---eEEEEC-CchhhhccchhhhcCCC-c--eeEEECCCCHH
Confidence 01 11457999999998743 34667777766432 666666 44433444455566666 3 68999999999
Q ss_pred HHHHH
Q 010136 311 QIIRI 315 (517)
Q Consensus 311 e~~~I 315 (517)
|....
T Consensus 158 Efl~~ 162 (398)
T COG1373 158 EFLKL 162 (398)
T ss_pred HHHhh
Confidence 99753
No 281
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.02 E-value=1e-07 Score=95.76 Aligned_cols=168 Identities=19% Similarity=0.159 Sum_probs=82.2
Q ss_pred CCCCcHHHHHHHHHHHHHhhccC--------CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCC
Q 010136 125 TIVCREDEQKKVLEFCKKNLEEE--------KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLT 196 (517)
Q Consensus 125 ~l~gRe~e~~~l~~~L~~~l~~~--------~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~ 196 (517)
.++|.+.....|.-.|....... ..-++||.|.||||||.+++++.+-. ...+|+++...+
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~-----------pr~v~~~g~~~s 93 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLA-----------PRSVYTSGKGSS 93 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT------------SSEEEEECCGST
T ss_pred cCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhC-----------CceEEECCCCcc
Confidence 57787765444433332222211 12389999999999999999875432 357888876643
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHH-HHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCC----C---
Q 010136 197 NTSEIFSKILLKLQPRKKLNGSTSPLQYLQN-LYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTT----F--- 268 (517)
Q Consensus 197 s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~----~--- 268 (517)
...-. ..+... ...+.. .++. .+ ++ .. .-|++|||+|.+.......|++.++--. .
T Consensus 94 ~~gLt-----a~~~~d--~~~~~~---~leaGal---vl-ad--~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi 157 (331)
T PF00493_consen 94 AAGLT-----ASVSRD--PVTGEW---VLEAGAL---VL-AD--GGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGI 157 (331)
T ss_dssp CCCCC-----EEECCC--GGTSSE---CEEE-HH---HH-CT--TSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSS
T ss_pred cCCcc-----ceeccc--ccccee---EEeCCch---hc-cc--CceeeecccccccchHHHHHHHHHHcCeeccchhhh
Confidence 21100 000000 000100 0110 01 11 12 2489999999998777788888887621 1
Q ss_pred ---CCCcEEEEEEECCCCc--------ch--hhcccccccCCCceEEEeCCCCHHHHHHHHHHHH
Q 010136 269 ---PFSRFILIGIANAIDL--------AD--RFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERL 320 (517)
Q Consensus 269 ---~~~~v~lI~ian~~~~--------~~--~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl 320 (517)
-+.++.|++++|...- .+ .+.+.+.|| |..-.+.+.+.+.+.-..+..+.+
T Consensus 158 ~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSR-FDLif~l~D~~d~~~D~~la~~il 221 (331)
T PF00493_consen 158 VTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSR-FDLIFLLRDKPDEEEDERLAEHIL 221 (331)
T ss_dssp EEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC--SEEECC--TTT-HHHHHHHHHHH
T ss_pred cccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhh-cCEEEEeccccccccccccceEEE
Confidence 1357899999997531 11 245788888 754334456777555555555444
No 282
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.01 E-value=1.4e-05 Score=76.60 Aligned_cols=100 Identities=11% Similarity=0.108 Sum_probs=59.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHH
Q 010136 147 EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQ 226 (517)
Q Consensus 147 ~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~ 226 (517)
+.+..++|.|++|+|||++++.+++.+... ......++++......+..+++..+...+-.... +.++...+.
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~----~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~---~~~~~~~~~ 86 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITKN----HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTF---DEPPERHVQ 86 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccccc----cCCeEEEEEEccCCCccHHHHHHHhccEEEEecC---CCCHHHHHH
Confidence 457789999999999999999998877542 1111234454555446788888887222211100 112222221
Q ss_pred ---HHHHh--hhccCCCceEEEEEeCcchhccc
Q 010136 227 ---NLYSQ--KLHSSVMKMMLIIADELDYLITR 254 (517)
Q Consensus 227 ---~~~~~--~~~~~~~~~~vI~iDEiD~L~~~ 254 (517)
..+.. ... ..++.++|||||+.++...
T Consensus 87 ~~~~~~~~a~~~~-~~G~~vll~iDei~r~a~a 118 (249)
T cd01128 87 VAEMVLEKAKRLV-EHGKDVVILLDSITRLARA 118 (249)
T ss_pred HHHHHHHHHHHHH-HCCCCEEEEEECHHHhhhh
Confidence 11111 111 3467899999999998643
No 283
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.00 E-value=4.8e-05 Score=67.80 Aligned_cols=40 Identities=18% Similarity=0.237 Sum_probs=31.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCC
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTN 197 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s 197 (517)
.++|+|+||+|||+++..++..+... + ..++++++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~----~---~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK----G---GKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc----C---CEEEEEECCcchH
Confidence 36899999999999999998887541 1 3688888876543
No 284
>PRK13695 putative NTPase; Provisional
Probab=97.97 E-value=1.3e-05 Score=72.84 Aligned_cols=76 Identities=14% Similarity=0.139 Sum_probs=48.3
Q ss_pred CceEEEEEeCcchhcccC---chHHHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHH
Q 010136 238 MKMMLIIADELDYLITRD---RAVLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIR 314 (517)
Q Consensus 238 ~~~~vI~iDEiD~L~~~~---~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~ 314 (517)
..+-+|+|||+..+.... .+.+..+++. ...+|++++.. ....+..++..+ .....+.+.+-+.+++..
T Consensus 95 ~~~~~lllDE~~~~e~~~~~~~~~l~~~~~~------~~~~i~v~h~~-~~~~~~~~i~~~-~~~~i~~~~~~~r~~~~~ 166 (174)
T PRK13695 95 EEADVIIIDEIGKMELKSPKFVKAVEEVLDS------EKPVIATLHRR-SVHPFVQEIKSR-PGGRVYELTPENRDSLPF 166 (174)
T ss_pred CCCCEEEEECCCcchhhhHHHHHHHHHHHhC------CCeEEEEECch-hhHHHHHHHhcc-CCcEEEEEcchhhhhHHH
Confidence 356789999975543222 2344444422 23466667753 233455677777 566889999999999888
Q ss_pred HHHHHHh
Q 010136 315 ILQERLM 321 (517)
Q Consensus 315 IL~~rl~ 321 (517)
.+..++.
T Consensus 167 ~~~~~~~ 173 (174)
T PRK13695 167 EILNRLK 173 (174)
T ss_pred HHHHHHh
Confidence 7776654
No 285
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.93 E-value=8.6e-05 Score=70.99 Aligned_cols=135 Identities=20% Similarity=0.192 Sum_probs=83.1
Q ss_pred CCCCcHHHHHHHHHHHHHhhccCCCC---eEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHH
Q 010136 125 TIVCREDEQKKVLEFCKKNLEEEKAG---SLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEI 201 (517)
Q Consensus 125 ~l~gRe~e~~~l~~~L~~~l~~~~~~---~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i 201 (517)
.+.|+.-..+.|...++..+.+..+. .+-++|.+||||...++.+++.+......... -..++.-..+..+..+
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~---V~~fvat~hFP~~~~i 159 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPF---VHHFVATLHFPHASKI 159 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchh---HHHhhhhccCCChHHH
Confidence 47888888888888888888765433 56689999999999999999988763221110 0112222222222211
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccC----CCCCCcEEEEE
Q 010136 202 FSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLT----TFPFSRFILIG 277 (517)
Q Consensus 202 ~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~----~~~~~~v~lI~ 277 (517)
....+.|.+.+...+ ...+..|+|+||+|.|...--++|.-+++.. .....+-++|.
T Consensus 160 -----------------e~Yk~eL~~~v~~~v--~~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frkaIFIf 220 (344)
T KOG2170|consen 160 -----------------EDYKEELKNRVRGTV--QACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKAIFIF 220 (344)
T ss_pred -----------------HHHHHHHHHHHHHHH--HhcCCceEEechhhhcCHhHHHHHhhhhccccccccccccceEEEE
Confidence 000223333333222 2456689999999999776667777787741 12334677888
Q ss_pred EECC
Q 010136 278 IANA 281 (517)
Q Consensus 278 ian~ 281 (517)
.+|.
T Consensus 221 LSN~ 224 (344)
T KOG2170|consen 221 LSNA 224 (344)
T ss_pred EcCC
Confidence 7875
No 286
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.86 E-value=0.0018 Score=60.78 Aligned_cols=185 Identities=11% Similarity=0.059 Sum_probs=112.1
Q ss_pred HHHhhccCC-CCeEEEEcCCC-CcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCC
Q 010136 140 CKKNLEEEK-AGSLYVCGCPG-TGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNG 217 (517)
Q Consensus 140 L~~~l~~~~-~~~lli~G~pG-tGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~ 217 (517)
+...++.+. ....+|.|..+ +||..++..++..+.......+. ...+..+....... ...
T Consensus 5 L~~~iq~~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~-HPD~~~I~pe~~~~-----------------~~~ 66 (263)
T PRK06581 5 LEFNLKHNKLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLEN-NPDYHFIARETSAT-----------------SNA 66 (263)
T ss_pred HHHHHHcCcchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCC-CCCEEEEecccccc-----------------ccC
Confidence 344444444 44567889997 99999999988877542111111 12334432211000 000
Q ss_pred CCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccC
Q 010136 218 STSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMN 296 (517)
Q Consensus 218 ~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~ 296 (517)
..-..+.++++.... .....++..|++||++|.|.....+.|..+++.+ ..+..+|.++.. ++++.|-++||
T Consensus 67 ~~I~IdqIReL~~~l~~~p~~g~~KViII~~ae~mt~~AANALLKtLEEP---P~~t~fILit~~---~~~LLpTIrSR- 139 (263)
T PRK06581 67 KNISIEQIRKLQDFLSKTSAISGYKVAIIYSAELMNLNAANSCLKILEDA---PKNSYIFLITSR---AASIISTIRSR- 139 (263)
T ss_pred CcccHHHHHHHHHHHhhCcccCCcEEEEEechHHhCHHHHHHHHHhhcCC---CCCeEEEEEeCC---hhhCchhHhhc-
Confidence 011134444443321 1223567789999999999887778888887764 456666666663 77889999999
Q ss_pred CCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 010136 297 CKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRSAI 358 (517)
Q Consensus 297 ~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~ 358 (517)
| +.+.|.........+....-+. ...+...++++.+. .+-|....++..+...
T Consensus 140 C--q~i~~~~p~~~~~~e~~~~~~~----p~~~~~~l~~i~~~---~~~d~~~w~~~~~~~~ 192 (263)
T PRK06581 140 C--FKINVRSSILHAYNELYSQFIQ----PIADNKTLDFINRF---TTKDRELWLDFIDNLL 192 (263)
T ss_pred e--EEEeCCCCCHHHHHHHHHHhcc----cccccHHHHHHHHH---hhhhHHHHHHHHHHHH
Confidence 7 7999999988777776654433 34456667887763 4445555555554443
No 287
>PRK04296 thymidine kinase; Provisional
Probab=97.84 E-value=3.3e-05 Score=71.32 Aligned_cols=111 Identities=14% Similarity=0.107 Sum_probs=55.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLY 229 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~ 229 (517)
...+++||+|+|||+++..++..+... + ..++.++. .+.+.+ ....+..+++.......-.. ...+...+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~----g---~~v~i~k~-~~d~~~-~~~~i~~~lg~~~~~~~~~~-~~~~~~~~ 72 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER----G---MKVLVFKP-AIDDRY-GEGKVVSRIGLSREAIPVSS-DTDIFELI 72 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc----C---CeEEEEec-cccccc-cCCcEecCCCCcccceEeCC-hHHHHHHH
Confidence 357899999999999999988776532 2 24555542 111111 12334444432111100011 22233333
Q ss_pred HhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEE
Q 010136 230 SQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIG 277 (517)
Q Consensus 230 ~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ 277 (517)
.+ ......+|+|||++.|.. +.+..+++.....+..+++.|
T Consensus 73 ~~----~~~~~dvviIDEaq~l~~---~~v~~l~~~l~~~g~~vi~tg 113 (190)
T PRK04296 73 EE----EGEKIDCVLIDEAQFLDK---EQVVQLAEVLDDLGIPVICYG 113 (190)
T ss_pred Hh----hCCCCCEEEEEccccCCH---HHHHHHHHHHHHcCCeEEEEe
Confidence 21 234567999999987632 224445554222333444444
No 288
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.84 E-value=0.00011 Score=73.84 Aligned_cols=97 Identities=11% Similarity=0.119 Sum_probs=60.4
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEE-EeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHH
Q 010136 147 EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFS-INCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYL 225 (517)
Q Consensus 147 ~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~-vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l 225 (517)
+.+...+|+|+||||||++++.+++.+... .+.+.+++ .=+....+..+++..+...+...... ..+...+
T Consensus 131 GkGQR~LIvG~pGtGKTTLl~~la~~i~~~-----~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~d---e~~~~~~ 202 (380)
T PRK12608 131 GKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-----HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFD---RPPDEHI 202 (380)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhc-----CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCC---CCHHHHH
Confidence 567789999999999999999999988652 12233233 22334457788888887766432211 1112211
Q ss_pred H------HHHHhhhccCCCceEEEEEeCcchhcc
Q 010136 226 Q------NLYSQKLHSSVMKMMLIIADELDYLIT 253 (517)
Q Consensus 226 ~------~~~~~~~~~~~~~~~vI~iDEiD~L~~ 253 (517)
. .... .+ ...++.+||++||+..+..
T Consensus 203 ~v~~~~~~~Ae-~f-~~~GkdVVLvlDsltr~A~ 234 (380)
T PRK12608 203 RVAELVLERAK-RL-VEQGKDVVILLDSLTRLAR 234 (380)
T ss_pred HHHHHHHHHHH-HH-HHcCCCEEEEEeCcHHHHH
Confidence 1 1111 11 2357789999999998864
No 289
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.83 E-value=0.00064 Score=69.32 Aligned_cols=152 Identities=22% Similarity=0.244 Sum_probs=84.3
Q ss_pred hhcCcCCCCCCCCCcHHHHHHHHHHHHHhhcc--------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCce
Q 010136 115 EALHVSTAPSTIVCREDEQKKVLEFCKKNLEE--------EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPE 186 (517)
Q Consensus 115 ~~l~~~~~p~~l~gRe~e~~~l~~~L~~~l~~--------~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~ 186 (517)
+.+..+ +-..++|.++..+.+...|...-+. ..--++|+.|.|||.|+-+++.+-+-- +-
T Consensus 323 e~is~s-IAPSIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvs-----------PI 390 (729)
T KOG0481|consen 323 ERISKS-IAPSIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVS-----------PI 390 (729)
T ss_pred HHHhhc-cCchhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcC-----------ce
Confidence 344444 3347899998777777666442211 012279999999999999999874321 24
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH-Hh--hhccCCCceEEEEEeCcchhcccCchHHHHHh
Q 010136 187 VFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLY-SQ--KLHSSVMKMMLIIADELDYLITRDRAVLHDLF 263 (517)
Q Consensus 187 ~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~-~~--~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~ 263 (517)
-||.++..... .. |.. ....... -++++ +. .++ ...-|++|||+|.+...+.-++++.+
T Consensus 391 aVYTSGKGSSA-AG--------LTA--SV~RD~~----tReFylEGGAMVL---ADgGVvCIDEFDKMre~DRVAIHEAM 452 (729)
T KOG0481|consen 391 AVYTSGKGSSA-AG--------LTA--SVIRDPS----TREFYLEGGAMVL---ADGGVVCIDEFDKMREDDRVAIHEAM 452 (729)
T ss_pred EEEecCCCccc-cc--------cee--eEEecCC----cceEEEecceEEE---ecCCEEEeehhhccCchhhhHHHHHH
Confidence 56666544211 10 000 0000000 00011 00 011 12248899999999877665666655
Q ss_pred cc----------CCCCCCcEEEEEEECCCC-----cc---h--hhcccccccCC
Q 010136 264 ML----------TTFPFSRFILIGIANAID-----LA---D--RFLPRLQSMNC 297 (517)
Q Consensus 264 ~~----------~~~~~~~v~lI~ian~~~-----~~---~--~l~~~l~sr~~ 297 (517)
+- .+.-+++..|++++|.+- +. + .+.+.+.|| |
T Consensus 453 EQQTISIAKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILSR-F 505 (729)
T KOG0481|consen 453 EQQTISIAKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILSR-F 505 (729)
T ss_pred HhhhHHHhhhcceeeecchhhhhhhcCCccccccccCCcccccchhhhHhhh-c
Confidence 43 233467888999999762 11 1 245788888 7
No 290
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.81 E-value=0.00079 Score=77.00 Aligned_cols=146 Identities=18% Similarity=0.157 Sum_probs=99.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCC-CC-HHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGS-TS-PLQYL 225 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~-~~-~~~~l 225 (517)
..-.++|-||..+|||+++.+++++.+. +||.||-..+++..+. ++.......| .+ -...|
T Consensus 887 ~~fP~LiQGpTSSGKTSMI~yla~~tgh----------kfVRINNHEHTdlqeY-------iGTyvTdd~G~lsFkEGvL 949 (4600)
T COG5271 887 SNFPLLIQGPTSSGKTSMILYLARETGH----------KFVRINNHEHTDLQEY-------IGTYVTDDDGSLSFKEGVL 949 (4600)
T ss_pred cCCcEEEecCCCCCcchHHHHHHHHhCc----------cEEEecCcccchHHHH-------hhceeecCCCceeeehhHH
Confidence 4557999999999999999999987652 6999999998765543 2211111112 11 02233
Q ss_pred HHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCC-----------CCCCcEEEEEEECCCCcc---hhhccc
Q 010136 226 QNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTT-----------FPFSRFILIGIANAIDLA---DRFLPR 291 (517)
Q Consensus 226 ~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~-----------~~~~~v~lI~ian~~~~~---~~l~~~ 291 (517)
...+. +..-|+|||.....+..-++|..|++-.. .+...+.+.++-|..... ..+..+
T Consensus 950 VeAlR--------~GyWIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrA 1021 (4600)
T COG5271 950 VEALR--------RGYWIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRA 1021 (4600)
T ss_pred HHHHh--------cCcEEEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHH
Confidence 44443 23467899998887777788888887521 255677888877754311 123455
Q ss_pred ccccCCCceEEEeCCCCHHHHHHHHHHHHh
Q 010136 292 LQSMNCKPLVVTFRAYSKDQIIRILQERLM 321 (517)
Q Consensus 292 l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~ 321 (517)
.+.| | -.++|.....+|+..||..|.+
T Consensus 1022 FRNR-F--lE~hFddipedEle~ILh~rc~ 1048 (4600)
T COG5271 1022 FRNR-F--LEMHFDDIPEDELEEILHGRCE 1048 (4600)
T ss_pred HHhh-h--HhhhcccCcHHHHHHHHhccCc
Confidence 6666 5 5899999999999999998753
No 291
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.81 E-value=7.1e-05 Score=78.60 Aligned_cols=212 Identities=14% Similarity=0.095 Sum_probs=124.4
Q ss_pred CCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHH
Q 010136 127 VCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKIL 206 (517)
Q Consensus 127 ~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~ 206 (517)
++-+..++.+...+..... ..-.+++.|.+||||-.+++++-+.-. .. -.|+.|||..... .. |.
T Consensus 316 ~~~d~s~a~l~rk~~rv~~--~~~pvll~GEtGtGKe~laraiH~~s~-~~-------gpfvAvNCaAip~--~l---ie 380 (606)
T COG3284 316 PLLDPSRATLLRKAERVAA--TDLPVLLQGETGTGKEVLARAIHQNSE-AA-------GPFVAVNCAAIPE--AL---IE 380 (606)
T ss_pred cccCHHHHHHHHHHHHHhh--cCCCeEecCCcchhHHHHHHHHHhccc-cc-------CCeEEEEeccchH--Hh---hh
Confidence 3555666666666666543 456899999999999999999866543 11 2699999988743 22 23
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccC-------CCCCCcEEEEEEE
Q 010136 207 LKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLT-------TFPFSRFILIGIA 279 (517)
Q Consensus 207 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~-------~~~~~~v~lI~ia 279 (517)
.+|.+...+.......+-..-.+. ......+|+|||..|.-.-|..|...+... +.....|-||++|
T Consensus 381 sELFGy~~GafTga~~kG~~g~~~------~A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~at 454 (606)
T COG3284 381 SELFGYVAGAFTGARRKGYKGKLE------QADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAAT 454 (606)
T ss_pred HHHhccCccccccchhccccccce------ecCCCccHHHHhhhchHHHHHHHHHHHhhCceeccCCcceeEEEEEEecc
Confidence 333333322211110111111121 122347999999999877777777666541 1134567888866
Q ss_pred CCCCcchhh-----cccccccCCCceEEEeCCCCH-HHHHHHHHHHHh--hhccCCCChhHHHHHHHHHHHHhCCHHHHH
Q 010136 280 NAIDLADRF-----LPRLQSMNCKPLVVTFRAYSK-DQIIRILQERLM--ELSYIVFQPQALELCARKVAAASGDMRKAL 351 (517)
Q Consensus 280 n~~~~~~~l-----~~~l~sr~~~~~~i~f~p~~~-~e~~~IL~~rl~--~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al 351 (517)
+. |+.... ...|.=| +..-+|.+||+.. .+....|.+.+. .-....+++++...+... ...|++|...
T Consensus 455 h~-dl~~lv~~g~fredLyyr-L~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~--~WPGNirel~ 530 (606)
T COG3284 455 HR-DLAQLVEQGRFREDLYYR-LNAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAY--RWPGNIRELD 530 (606)
T ss_pred Cc-CHHHHHHcCCchHHHHHH-hcCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhC--CCCCcHHHHH
Confidence 53 222211 1222223 4445889999843 233333333332 112347788887766442 5789999999
Q ss_pred HHHHHHHHHHHH
Q 010136 352 SVCRSAIEILEA 363 (517)
Q Consensus 352 ~ll~~A~~~a~~ 363 (517)
++++.+..++..
T Consensus 531 ~v~~~~~~l~~~ 542 (606)
T COG3284 531 NVIERLAALSDG 542 (606)
T ss_pred HHHHHHHHcCCC
Confidence 999998866543
No 292
>PRK10536 hypothetical protein; Provisional
Probab=97.80 E-value=0.0005 Score=65.51 Aligned_cols=43 Identities=21% Similarity=0.292 Sum_probs=34.2
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~ 172 (517)
..+.++...+..+..+|.. ...+++.|++|||||+++.+++.+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~------~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES------KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred ccccCCCHHHHHHHHHHhc------CCeEEEECCCCCCHHHHHHHHHHH
Confidence 3467777777777776643 358999999999999999999875
No 293
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.79 E-value=0.0027 Score=63.19 Aligned_cols=43 Identities=23% Similarity=0.386 Sum_probs=31.8
Q ss_pred cHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHH
Q 010136 129 REDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 129 Re~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~ 172 (517)
|+.-+ +|.+.|...........++|+|++|||||+++..+..-
T Consensus 4 R~~t~-el~~~l~~~~~~~~~~r~vL~G~~GsGKS~~L~q~~~~ 46 (309)
T PF10236_consen 4 RKPTL-ELINKLKEADKSSKNNRYVLTGERGSGKSVLLAQAVHY 46 (309)
T ss_pred chHHH-HHHHHHHHhcccCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 44433 45666666655566778999999999999998887654
No 294
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.75 E-value=8e-05 Score=61.86 Aligned_cols=26 Identities=27% Similarity=0.526 Sum_probs=23.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHHH
Q 010136 152 LYVCGCPGTGKSLSMEKVQHYLVDWA 177 (517)
Q Consensus 152 lli~G~pGtGKT~l~~~v~~~l~~~~ 177 (517)
|+|+|+||+|||++++.+++.+.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 58999999999999999999987643
No 295
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.74 E-value=0.00025 Score=61.82 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=24.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDW 176 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~ 176 (517)
.-.++|+|+||+||||++..+++.|.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 3468999999999999999999998864
No 296
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.72 E-value=8e-05 Score=75.23 Aligned_cols=100 Identities=10% Similarity=0.098 Sum_probs=57.9
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHH-
Q 010136 147 EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYL- 225 (517)
Q Consensus 147 ~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l- 225 (517)
+.+..++|+||||+|||++++.+++.+.... .....++.+....-.+..+++..+...+-.... +.++....
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nh----fdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~---d~p~~~~~~ 238 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITRNH----PEVELIVLLIDERPEEVTDMQRSVKGEVVASTF---DEPASRHVQ 238 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhcccC----CceEEEEEEcCCCCccHHHHHHHhhceEEEecC---CCChHHHHH
Confidence 4577899999999999999999988775421 111124444444445777887777433211111 11222211
Q ss_pred --HHHHHh-hhccCCCceEEEEEeCcchhcc
Q 010136 226 --QNLYSQ-KLHSSVMKMMLIIADELDYLIT 253 (517)
Q Consensus 226 --~~~~~~-~~~~~~~~~~vI~iDEiD~L~~ 253 (517)
...+.. ......++.+||||||++.+..
T Consensus 239 va~~v~e~Ae~~~~~GkdVVLlIDEitR~ar 269 (415)
T TIGR00767 239 VAEMVIEKAKRLVEHKKDVVILLDSITRLAR 269 (415)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEChhHHHH
Confidence 111111 0111356779999999999864
No 297
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.71 E-value=0.00043 Score=65.69 Aligned_cols=139 Identities=15% Similarity=0.076 Sum_probs=72.1
Q ss_pred HHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCC
Q 010136 136 VLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKL 215 (517)
Q Consensus 136 l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~ 215 (517)
....|..++. ...+..++||+|||||.+++.+++.++. .++.+||....+...
T Consensus 21 ~~~~l~~al~--~~~~~~~~GpagtGKtetik~La~~lG~----------~~~vfnc~~~~~~~~--------------- 73 (231)
T PF12774_consen 21 CFLTLTQALS--LNLGGALSGPAGTGKTETIKDLARALGR----------FVVVFNCSEQMDYQS--------------- 73 (231)
T ss_dssp HHHHHHHHHC--TTTEEEEESSTTSSHHHHHHHHHHCTT------------EEEEETTSSS-HHH---------------
T ss_pred HHHHHHHHhc--cCCCCCCcCCCCCCchhHHHHHHHHhCC----------eEEEecccccccHHH---------------
Confidence 3444444443 2345568999999999999999998875 588899998655333
Q ss_pred CCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHH----Hhcc---CCC----------CCCcEEEEEE
Q 010136 216 NGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHD----LFML---TTF----------PFSRFILIGI 278 (517)
Q Consensus 216 ~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~----l~~~---~~~----------~~~~v~lI~i 278 (517)
+.++|.-.. . ...-+++||++.|......++.+ +.+. ... -+..+.+..+
T Consensus 74 ---------l~ril~G~~---~-~GaW~cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT 140 (231)
T PF12774_consen 74 ---------LSRILKGLA---Q-SGAWLCFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFIT 140 (231)
T ss_dssp ---------HHHHHHHHH---H-HT-EEEEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEE
T ss_pred ---------HHHHHHHHh---h-cCchhhhhhhhhhhHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEe
Confidence 223332100 1 12578999999996543322221 1111 000 0112333333
Q ss_pred ECCCC-cchhhcccccccCCCceEEEeCCCCHHHHHHHHH
Q 010136 279 ANAID-LADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQ 317 (517)
Q Consensus 279 an~~~-~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~ 317 (517)
.|.-. -...+.+.++.- | +.+.+..+|...+.+++.
T Consensus 141 ~np~y~gr~~LP~nLk~l-F--Rpvam~~PD~~~I~ei~L 177 (231)
T PF12774_consen 141 MNPGYAGRSELPENLKAL-F--RPVAMMVPDLSLIAEILL 177 (231)
T ss_dssp E-B-CCCC--S-HHHCTT-E--EEEE--S--HHHHHHHHH
T ss_pred eccccCCcccCCHhHHHH-h--heeEEeCCCHHHHHHHHH
Confidence 44211 122344555554 5 788888888888877765
No 298
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.71 E-value=0.0001 Score=75.35 Aligned_cols=45 Identities=31% Similarity=0.580 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 131 DEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 131 ~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
.|++.+.+.+...+....+.+++|.|+.|||||++++++...+..
T Consensus 4 ~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred HHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 455667777666666678889999999999999999999887754
No 299
>PRK14974 cell division protein FtsY; Provisional
Probab=97.71 E-value=0.0012 Score=66.03 Aligned_cols=96 Identities=17% Similarity=0.172 Sum_probs=56.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCH-HHHHHHHHHHhCCCCC-CCCCCCHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNT-SEIFSKILLKLQPRKK-LNGSTSPLQYL 225 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~-~~i~~~i~~~l~~~~~-~~~~~~~~~~l 225 (517)
.+..++|+|++|+||||++..++..+... + ..++.+++..++.. ..-+...+..++.... ...+..+...+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~----g---~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~ 211 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN----G---FSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVA 211 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc----C---CeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHH
Confidence 35678999999999999999999877542 2 35666776655332 2234445555543221 12233333434
Q ss_pred HHHHHhhhccCCCceEEEEEeCcchhcc
Q 010136 226 QNLYSQKLHSSVMKMMLIIADELDYLIT 253 (517)
Q Consensus 226 ~~~~~~~~~~~~~~~~vI~iDEiD~L~~ 253 (517)
...+.... ....-+|+||.+..+..
T Consensus 212 ~~ai~~~~---~~~~DvVLIDTaGr~~~ 236 (336)
T PRK14974 212 YDAIEHAK---ARGIDVVLIDTAGRMHT 236 (336)
T ss_pred HHHHHHHH---hCCCCEEEEECCCccCC
Confidence 34333111 12234999999988753
No 300
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.68 E-value=0.00023 Score=74.06 Aligned_cols=148 Identities=18% Similarity=0.150 Sum_probs=78.5
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCC--------CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCC
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEK--------AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSL 195 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~--------~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~ 195 (517)
..++|.++....+.-.|........ --++||+|.|||||+-.++++.+--. +.|+..+..-
T Consensus 449 PsIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~-----------RAV~tTGqGA 517 (854)
T KOG0477|consen 449 PSIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSP-----------RAVFTTGQGA 517 (854)
T ss_pred chhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCc-----------ceeEeccCCc
Confidence 3688888866666666544332211 12799999999999999999876433 2333333222
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCC--------
Q 010136 196 TNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTT-------- 267 (517)
Q Consensus 196 ~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~-------- 267 (517)
++.... ... .+.+-.+. ..|+.- ..+++ ..-|-+|||+|.+...+...+++.++--.
T Consensus 518 SavGLT-----a~v--~KdPvtrE---WTLEaG--ALVLA---DkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGI 582 (854)
T KOG0477|consen 518 SAVGLT-----AYV--RKDPVTRE---WTLEAG--ALVLA---DKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGI 582 (854)
T ss_pred ccccee-----EEE--eeCCccce---eeeccC--eEEEc---cCceEEeehhhhhcccccchHHHHHHhcchhhhhhhH
Confidence 111000 000 00000000 000000 00111 12367899999998766666666554311
Q ss_pred --CCCCcEEEEEEECCCC--------cch--hhcccccccCCC
Q 010136 268 --FPFSRFILIGIANAID--------LAD--RFLPRLQSMNCK 298 (517)
Q Consensus 268 --~~~~~v~lI~ian~~~--------~~~--~l~~~l~sr~~~ 298 (517)
.-..++.+|+++|.+. |.+ .+...+.|| |.
T Consensus 583 VtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlSR-FD 624 (854)
T KOG0477|consen 583 VTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSR-FD 624 (854)
T ss_pred HHHHHhhhhhheecCCCCCccCCccchhhccccccchhhh-cc
Confidence 1235788999999842 444 344667777 53
No 301
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.68 E-value=9.8e-05 Score=74.26 Aligned_cols=99 Identities=10% Similarity=0.122 Sum_probs=54.3
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCC-CCHHHHHHHHHHHhCCCCCCCCCCCHHHHH
Q 010136 147 EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSL-TNTSEIFSKILLKLQPRKKLNGSTSPLQYL 225 (517)
Q Consensus 147 ~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~-~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l 225 (517)
+.+...+|+||||+|||++++.+++.+.... ..+..+.+..... ....+++..+...+ .......++...+
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I~~nh-----FDv~~~VvLIgER~~EVtdiqrsIlg~v---v~st~d~~~~~~~ 238 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSITTNH-----PEVHLIVLLIDERPEEVTDMQRSVKGEV---VASTFDEPAERHV 238 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHHHhhc-----CCeEEEEEEeCCchhHHHHHHHHhcCcE---EEECCCCCHHHHH
Confidence 4577899999999999999999998876531 1122222222221 23445555443211 0011122223322
Q ss_pred H---HHHHh--hhccCCCceEEEEEeCcchhccc
Q 010136 226 Q---NLYSQ--KLHSSVMKMMLIIADELDYLITR 254 (517)
Q Consensus 226 ~---~~~~~--~~~~~~~~~~vI~iDEiD~L~~~ 254 (517)
. ..+.. ... ..++.++|||||++++...
T Consensus 239 ~~a~~~ie~Ae~~~-e~G~dVlL~iDsItR~arA 271 (416)
T PRK09376 239 QVAEMVIEKAKRLV-EHGKDVVILLDSITRLARA 271 (416)
T ss_pred HHHHHHHHHHHHHH-HcCCCEEEEEEChHHHHHH
Confidence 2 11111 111 3567789999999998753
No 302
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00071 Score=72.23 Aligned_cols=178 Identities=19% Similarity=0.148 Sum_probs=101.9
Q ss_pred cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHH
Q 010136 146 EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYL 225 (517)
Q Consensus 146 ~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l 225 (517)
...+.+++++||||||||++++.++.. . ..+..+++....+.+. +. ....+
T Consensus 15 ~~~~~~v~~~g~~~~~~t~~~~~~a~~-~----------~~~~~~~~~~~~~~~~-----------------~~-~~~~~ 65 (494)
T COG0464 15 IEPPKGVLLHGPPGTGKTLLARALANE-G----------AEFLSINGPEILSKYV-----------------GE-SELRL 65 (494)
T ss_pred CCCCCCceeeCCCCCchhHHHHHHHhc-c----------CcccccCcchhhhhhh-----------------hH-HHHHH
Confidence 346789999999999999999999887 1 1225555554433222 12 24555
Q ss_pred HHHHHhhhccCCCceEEEEEeCcchhcccCch-----------HHHHHhccCCCCCCcEEEEEEECCCCcchhhcccccc
Q 010136 226 QNLYSQKLHSSVMKMMLIIADELDYLITRDRA-----------VLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQS 294 (517)
Q Consensus 226 ~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~-----------~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~s 294 (517)
...|... ....+.++++||+|.+...... .+..+++... ... +++++.+|..+ .+++.+..
T Consensus 66 ~~~~~~a---~~~~~~ii~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~-~~~-v~~~~~~~~~~---~~~~a~~~ 137 (494)
T COG0464 66 RELFEEA---EKLAPSIIFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLK-RGQ-VIVIGATNRPD---GLDPAKRR 137 (494)
T ss_pred HHHHHHH---HHhCCCeEeechhhhcccCccccccchhhHHHHHHHHhccccc-CCc-eEEEeecCCcc---ccChhHhC
Confidence 6666532 2344489999999999876432 2333333333 444 88888777544 34444443
Q ss_pred cCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 010136 295 MNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRSAIEILEAE 364 (517)
Q Consensus 295 r~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~~a~~~ 364 (517)
.......+.+...+.....+|+......... -.+.....++....+.. ....-.+++.+...+...
T Consensus 138 ~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~--~~~~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~r 203 (494)
T COG0464 138 PGRFDREIEVNLPDEAGRLEILQIHTRLMFL--GPPGTGKTLAARTVGKS--GADLGALAKEAALRELRR 203 (494)
T ss_pred ccccceeeecCCCCHHHHHHHHHHHHhcCCC--cccccHHHHHHhcCCcc--HHHHHHHHHHHHHHHHHh
Confidence 3223457777777777667777765543211 11344555555332222 223334566665555444
No 303
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.66 E-value=0.00099 Score=64.66 Aligned_cols=176 Identities=15% Similarity=0.236 Sum_probs=87.9
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFS 203 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~ 203 (517)
-+++-.++.++.|....+- +. .+.+++++.|.+|+||+++++..+--.. ..++.+......+..++
T Consensus 8 m~lVlf~~ai~hi~ri~Rv-L~-~~~Gh~LLvG~~GsGr~sl~rLaa~i~~----------~~~~~i~~~~~y~~~~f-- 73 (268)
T PF12780_consen 8 MNLVLFDEAIEHIARISRV-LS-QPRGHALLVGVGGSGRQSLARLAAFICG----------YEVFQIEITKGYSIKDF-- 73 (268)
T ss_dssp ------HHHHHHHHHHHHH-HC-STTEEEEEECTTTSCHHHHHHHHHHHTT----------EEEE-TTTSTTTHHHHH--
T ss_pred cceeeHHHHHHHHHHHHHH-Hc-CCCCCeEEecCCCccHHHHHHHHHHHhc----------cceEEEEeeCCcCHHHH--
Confidence 3566667777766655433 33 4668999999999999999997654322 46777766554333333
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchh-----------------------------ccc
Q 010136 204 KILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYL-----------------------------ITR 254 (517)
Q Consensus 204 ~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L-----------------------------~~~ 254 (517)
.+.|+.++... .-.+++.+++|+|-+-. ...
T Consensus 74 ------------------~~dLk~~~~~a--g~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~ 133 (268)
T PF12780_consen 74 ------------------KEDLKKALQKA--GIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISS 133 (268)
T ss_dssp ------------------HHHHHHHHHHH--HCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHH
T ss_pred ------------------HHHHHHHHHHH--hccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHH
Confidence 22333333321 12344556666554322 110
Q ss_pred ------------CchHHHHHhccCCCCCCcEEEEEEECCCCcchh--hcccccccCCCceEEEeCCCCHHHHHHHHHHHH
Q 010136 255 ------------DRAVLHDLFMLTTFPFSRFILIGIANAIDLADR--FLPRLQSMNCKPLVVTFRAYSKDQIIRILQERL 320 (517)
Q Consensus 255 ------------~~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~--l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl 320 (517)
..+.++++|-..-..+-+|+++.-.....+..+ -.|.+.+. + ....|.+++.+.+..+-...+
T Consensus 134 l~~~~~~~~~~~~~~~~~~~F~~rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~~-c--tIdW~~~W~~eaL~~Va~~~l 210 (268)
T PF12780_consen 134 LREEAKAEGISDSRESLYEFFIERVRKNLHIVLCMSPVGPNFRDRCRSFPALVNC-C--TIDWFDPWPEEALLSVANKFL 210 (268)
T ss_dssp HHHHHHHCT--SSHHHHHHHHHHHHCCCEEEEEEESTTTTCCCHHHHHHCCHHHH-S--EEEEEES--HHHHHHHHHHHC
T ss_pred hHHHHHHcCCCCchHHHHHHHHHHHHhheeEEEEECCCCchHHHHHHhCcchhcc-c--EEEeCCcCCHHHHHHHHHHHH
Confidence 001122222111112234444331112223333 35888876 6 689999999999999988877
Q ss_pred hhhccCCCChhHHHHHHH
Q 010136 321 MELSYIVFQPQALELCAR 338 (517)
Q Consensus 321 ~~~~~~~~~~~ai~~ia~ 338 (517)
.... .++++..+.++.
T Consensus 211 ~~~~--~~~~~~~~~l~~ 226 (268)
T PF12780_consen 211 SDIE--LLSEELKKSLAE 226 (268)
T ss_dssp CHHH--TSS--HHHHHHH
T ss_pred Hhhc--ccchhHHHHHHH
Confidence 6542 234444444443
No 304
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=97.66 E-value=0.00038 Score=63.29 Aligned_cols=106 Identities=16% Similarity=0.161 Sum_probs=77.9
Q ss_pred EEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCc-----------eEEEeCCCCHHH
Q 010136 243 IIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKP-----------LVVTFRAYSKDQ 311 (517)
Q Consensus 243 I~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~-----------~~i~f~p~~~~e 311 (517)
++||++|.|....+++|...++. |..++.+|.+|+. +..+.|.++|| |.. ..+.|.+++.++
T Consensus 58 ~iI~~a~~l~~~A~NaLLK~LEE---Pp~~~~fiL~t~~---~~~llpTI~SR-c~~~~~~~~~~~~~l~l~l~~l~~~~ 130 (206)
T PRK08485 58 IIVIAAPSYGIEAQNALLKILEE---PPKNICFIIVAKS---KNLLLPTIRSR-LIIEKRKQKKPVKPLDLDLKKLDLKD 130 (206)
T ss_pred EEEEchHhhCHHHHHHHHHHhcC---CCCCeEEEEEeCC---hHhCchHHHhh-heeccccccccccccccccCCCCHHH
Confidence 35789999987777888777766 4456777777774 77789999999 621 147899999999
Q ss_pred HHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 010136 312 IIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRSAIEI 360 (517)
Q Consensus 312 ~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~~ 360 (517)
+.+.|.. ++.. .....+++.+.+++. ..|.+|.++.+...+++.
T Consensus 131 i~~~L~~-~~ke-~~~~~~ea~~lIa~l---a~~s~r~~l~l~~q~l~~ 174 (206)
T PRK08485 131 IYEFLKE-LEKE-NKLSKEELKELIESL---LKECVKYKIPLNEEELEY 174 (206)
T ss_pred HHHHHHH-HHHc-ccccHHHHHHHHHHH---HHHHHHHHcCccHHHHHH
Confidence 9999997 4321 235677888888874 566788887766666543
No 305
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.62 E-value=0.00034 Score=75.60 Aligned_cols=121 Identities=17% Similarity=0.255 Sum_probs=67.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCC----CCCCCHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKL----NGSTSPLQY 224 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~----~~~~~~~~~ 224 (517)
.+..+|+|+||||||++++.++..+...... + ...+.+.++...-...+-..+...+...... ..-......
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~---~-~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~T 242 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADG---E-RCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEAST 242 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCC---C-CcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHH
Confidence 4689999999999999999999887543211 1 1346666666544444433333222110000 000011334
Q ss_pred HHHHHHhhhc--------cCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEE
Q 010136 225 LQNLYSQKLH--------SSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIG 277 (517)
Q Consensus 225 l~~~~~~~~~--------~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ 277 (517)
+.+++..... ...-..-+|||||+-.+ +...++.|++... ++.+++++|
T Consensus 243 iHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv---d~~lm~~ll~al~-~~~rlIlvG 299 (615)
T PRK10875 243 LHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV---DLPMMARLIDALP-PHARVIFLG 299 (615)
T ss_pred HHHHhCcCCCccchhhccccCCCCCeEEEChHhcc---cHHHHHHHHHhcc-cCCEEEEec
Confidence 5555432100 01112249999999877 3567777777532 567888887
No 306
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.58 E-value=0.0029 Score=59.97 Aligned_cols=149 Identities=15% Similarity=0.171 Sum_probs=79.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHH-hCCCCCCCCCCCHHHH--
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLK-LQPRKKLNGSTSPLQY-- 224 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~-l~~~~~~~~~~~~~~~-- 224 (517)
.+-.+.|.|++|+|||++++.++..+... +..+++-+.... ...+.-++.. +..... .......
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~~~~--------f~~I~l~t~~~n--~~~~~~i~p~~i~~~~~---~e~le~~l~ 78 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYLRHK--------FDHIFLITPEYN--NEYYKYIWPDHIFKVFD---KEELEYILI 78 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhccc--------CCEEEEEecCCc--hhhhhhcchhhcccccc---HHHHHHHHH
Confidence 34589999999999999999998776542 345555555333 2233333322 111000 0000111
Q ss_pred -----HHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCc
Q 010136 225 -----LQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKP 299 (517)
Q Consensus 225 -----l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~ 299 (517)
+.++.............+||+|++-.- ...+..+..++.-. ...++.+|.++.+ .-.+.+.+++. ..
T Consensus 79 ~~k~~I~k~~~k~~~~k~~~~~LiIlDD~~~~-~~k~~~l~~~~~~g--RH~~is~i~l~Q~---~~~lp~~iR~n-~~- 150 (241)
T PF04665_consen 79 RQKEKIEKYIKKSPQKKNNPRFLIILDDLGDK-KLKSKILRQFFNNG--RHYNISIIFLSQS---YFHLPPNIRSN-ID- 150 (241)
T ss_pred HHHHHHHHHhhhhcccCCCCCeEEEEeCCCCc-hhhhHHHHHHHhcc--cccceEEEEEeee---cccCCHHHhhc-ce-
Confidence 112221000111234789999997541 12355677777543 3446777766663 33455555554 42
Q ss_pred eEEEeCCCCHHHHHHHHHH
Q 010136 300 LVVTFRAYSKDQIIRILQE 318 (517)
Q Consensus 300 ~~i~f~p~~~~e~~~IL~~ 318 (517)
..+.| ..+..++..|++.
T Consensus 151 y~i~~-~~s~~dl~~i~~~ 168 (241)
T PF04665_consen 151 YFIIF-NNSKRDLENIYRN 168 (241)
T ss_pred EEEEe-cCcHHHHHHHHHh
Confidence 35556 4678887766664
No 307
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.57 E-value=0.00041 Score=58.43 Aligned_cols=52 Identities=19% Similarity=0.187 Sum_probs=43.6
Q ss_pred CCCCcHHHHHHHHHHHHHhhccCCC---CeEEEEcCCCCcHHHHHHHHHHHHHHH
Q 010136 125 TIVCREDEQKKVLEFCKKNLEEEKA---GSLYVCGCPGTGKSLSMEKVQHYLVDW 176 (517)
Q Consensus 125 ~l~gRe~e~~~l~~~L~~~l~~~~~---~~lli~G~pGtGKT~l~~~v~~~l~~~ 176 (517)
.++|+.-..+.+...|...+....+ -.+-++|+||||||.+++.+++.+...
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~ 80 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKS 80 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhc
Confidence 5899999999999999988875432 245589999999999999999998764
No 308
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=97.57 E-value=0.0003 Score=69.79 Aligned_cols=129 Identities=17% Similarity=0.224 Sum_probs=74.2
Q ss_pred HhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHH---HHhC--------
Q 010136 142 KNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKIL---LKLQ-------- 210 (517)
Q Consensus 142 ~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~---~~l~-------- 210 (517)
+++..+.+..++|-|.||||||+++-.+++.+.++ ..+.|++... ++..+|..-+ ..+.
T Consensus 3 ~FF~~~~G~TLLIKG~PGTGKTtfaLelL~~l~~~--------~~v~YISTRV--d~d~vy~~y~~~~~~i~~~~vlDat 72 (484)
T PF07088_consen 3 RFFTQEPGQTLLIKGEPGTGKTTFALELLNSLKDH--------GNVMYISTRV--DQDTVYEMYPWIEESIDPTNVLDAT 72 (484)
T ss_pred hhhcCCCCcEEEEecCCCCCceeeehhhHHHHhcc--------CCeEEEEecc--CHHHHHHhhhhhccccChhhhhhhc
Confidence 45666778899999999999999999999988764 2477888763 3444432221 1111
Q ss_pred -C----CC--CCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeC----cchhccc--Cch----HHHHHhccCCCCCCcE
Q 010136 211 -P----RK--KLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADE----LDYLITR--DRA----VLHDLFMLTTFPFSRF 273 (517)
Q Consensus 211 -~----~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDE----iD~L~~~--~~~----~L~~l~~~~~~~~~~v 273 (517)
. .. ..+......+.+..++++. ....+..+|+||- ++.+..+ ..+ +..+|.......+.++
T Consensus 73 Qd~~~~~~~~~vp~~~l~~ds~~~f~~~i--~~~~k~~iI~~DSWdaiieyla~~~~~~ed~e~l~~dLv~lard~g~~L 150 (484)
T PF07088_consen 73 QDPFELPLDKDVPFERLDIDSFRDFVDKI--NEAGKKPIIAFDSWDAIIEYLAEEHDEPEDIETLTNDLVELARDMGINL 150 (484)
T ss_pred cchhhccccccCcccccCHHHHHHHHHHh--hhcccCcEEEEecHHHHHHHhhhhhcCcHHHHHHHHHHHHHHhhcCceE
Confidence 0 00 0000011134555555521 1235667899999 7777643 222 2334444444456677
Q ss_pred EEEEEECCC
Q 010136 274 ILIGIANAI 282 (517)
Q Consensus 274 ~lI~ian~~ 282 (517)
++|.-+...
T Consensus 151 IlVsEsa~~ 159 (484)
T PF07088_consen 151 ILVSESAEN 159 (484)
T ss_pred EEEEecCCC
Confidence 777655443
No 309
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.57 E-value=0.00033 Score=60.17 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=22.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
+++|+|++|+|||+++-.++..+..
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~ 26 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLD 26 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHh
Confidence 6899999999999999998877664
No 310
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.55 E-value=0.00022 Score=72.52 Aligned_cols=89 Identities=19% Similarity=0.208 Sum_probs=53.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCC--CCCCHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLN--GSTSPLQYLQ 226 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~--~~~~~~~~l~ 226 (517)
+..++|+|+||+|||+++..++..+... + -.++|++... +..++. .-+..++-..... ......+.+.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~----g---~~VlYvs~EE--s~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~ 151 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR----G---GKVLYVSGEE--SPEQIK-LRADRLGISTENLYLLAETNLEDIL 151 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc----C---CeEEEEECCc--CHHHHH-HHHHHcCCCcccEEEEccCcHHHHH
Confidence 4578899999999999999998776542 1 2588998764 333332 2233443211100 0111133344
Q ss_pred HHHHhhhccCCCceEEEEEeCcchhcc
Q 010136 227 NLYSQKLHSSVMKMMLIIADELDYLIT 253 (517)
Q Consensus 227 ~~~~~~~~~~~~~~~vI~iDEiD~L~~ 253 (517)
+.+. ..++.+||||+++.+..
T Consensus 152 ~~i~------~~~~~lVVIDSIq~l~~ 172 (372)
T cd01121 152 ASIE------ELKPDLVIIDSIQTVYS 172 (372)
T ss_pred HHHH------hcCCcEEEEcchHHhhc
Confidence 4443 34678999999998853
No 311
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.55 E-value=0.00048 Score=74.31 Aligned_cols=122 Identities=16% Similarity=0.262 Sum_probs=63.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCC---C-CCCCCCHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRK---K-LNGSTSPLQY 224 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~---~-~~~~~~~~~~ 224 (517)
.+..+|+|+||||||+++..++..+.......+. . -+.+.+....-...+-..+...+.... . ...-......
T Consensus 160 ~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~--~-~I~l~APTGkAA~rL~e~~~~~~~~l~~~~~~~~~~~~~a~T 236 (586)
T TIGR01447 160 SNFSLITGGPGTGKTTTVARLLLALVKQSPKQGK--L-RIALAAPTGKAAARLAESLRKAVKNLAAAEALIAALPSEAVT 236 (586)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCC--C-cEEEECCcHHHHHHHHHHHHhhhcccccchhhhhccccccch
Confidence 4789999999999999999999887654322110 1 244555443323333333322211000 0 0000000122
Q ss_pred HHHHHHhh--------hccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEE
Q 010136 225 LQNLYSQK--------LHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIG 277 (517)
Q Consensus 225 l~~~~~~~--------~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ 277 (517)
+.+++... ........-+|||||+-.+. ...++.|++... ...+++++|
T Consensus 237 iHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd---~~l~~~ll~al~-~~~rlIlvG 293 (586)
T TIGR01447 237 IHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD---LPLMAKLLKALP-PNTKLILLG 293 (586)
T ss_pred hhhhhcccCCcchhhhcccCCCcccEEEEcccccCC---HHHHHHHHHhcC-CCCEEEEEC
Confidence 33333210 00112234599999998874 456777776532 457888877
No 312
>PHA02774 E1; Provisional
Probab=97.51 E-value=0.00061 Score=71.72 Aligned_cols=40 Identities=28% Similarity=0.321 Sum_probs=31.1
Q ss_pred HHHHHHHHhhccCC-CCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 135 KVLEFCKKNLEEEK-AGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 135 ~l~~~L~~~l~~~~-~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.+...|+.++++.+ .++++|+||||||||+++.++++.+.
T Consensus 419 ~fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~ 459 (613)
T PHA02774 419 SFLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK 459 (613)
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34555666665433 46899999999999999999998874
No 313
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.48 E-value=0.00031 Score=64.45 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=31.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSK 204 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~ 204 (517)
.++|+|+||||||+++..++..... .| -.++|++... +...+...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~----~g---~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLA----RG---EPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH----CC---CcEEEEECCC--CHHHHHHH
Confidence 3789999999999999998776542 22 2477887644 34444433
No 314
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.47 E-value=0.0004 Score=70.69 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.++|.|.||||||.++-.++..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 57899999999999999999998
No 315
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.47 E-value=0.00019 Score=75.37 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=45.0
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhcc--CCCCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 123 PSTIVCREDEQKKVLEFCKKNLEE--EKAGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 123 p~~l~gRe~e~~~l~~~L~~~l~~--~~~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
.++++|.++.+++|..+|.....+ .....++|.||||+|||++++.+++.+..
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 346899999999999999776554 34568999999999999999999998875
No 316
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=97.46 E-value=0.0023 Score=63.76 Aligned_cols=47 Identities=17% Similarity=0.190 Sum_probs=34.2
Q ss_pred cHHHHHHHHHHHHHhhccCC--CCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 129 REDEQKKVLEFCKKNLEEEK--AGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 129 Re~e~~~l~~~L~~~l~~~~--~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
-++.++.+.+++..++.+.. ...++++|+.|+|||++++.+..-++.
T Consensus 54 d~~~~~~l~~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~~~l~~l~G~ 102 (304)
T TIGR01613 54 DNELIEYLQRVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQNLLSNLLGD 102 (304)
T ss_pred CHHHHHHHHHHHhHHhcCCCCceEEEEEECCCCCcHHHHHHHHHHHhCh
Confidence 34456667777777776532 346889999999999999987666654
No 317
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.44 E-value=0.00082 Score=62.23 Aligned_cols=41 Identities=29% Similarity=0.310 Sum_probs=26.8
Q ss_pred cHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 129 REDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 129 Re~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
+..++....+.|. ....+.+.||+|||||.++-+.+-++-.
T Consensus 5 ~~~~Q~~~~~al~------~~~~v~~~G~AGTGKT~LA~a~Al~~v~ 45 (205)
T PF02562_consen 5 KNEEQKFALDALL------NNDLVIVNGPAGTGKTFLALAAALELVK 45 (205)
T ss_dssp -SHHHHHHHHHHH------H-SEEEEE--TTSSTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH------hCCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3344445555554 2468999999999999999998876543
No 318
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.42 E-value=0.0014 Score=72.79 Aligned_cols=106 Identities=15% Similarity=0.182 Sum_probs=59.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNL 228 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~ 228 (517)
.+.++|.|+||||||++++.++..+.... + ...+.+-++..... ..|.+..+.. ...+..+
T Consensus 338 ~~~~iitGgpGTGKTt~l~~i~~~~~~~~---~---~~~v~l~ApTg~AA----~~L~e~~g~~---------a~Tih~l 398 (720)
T TIGR01448 338 HKVVILTGGPGTGKTTITRAIIELAEELG---G---LLPVGLAAPTGRAA----KRLGEVTGLT---------ASTIHRL 398 (720)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcC---C---CceEEEEeCchHHH----HHHHHhcCCc---------cccHHHH
Confidence 45899999999999999999988776421 0 12344444432211 1233222111 1112222
Q ss_pred HHhh-------hccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEE
Q 010136 229 YSQK-------LHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIG 277 (517)
Q Consensus 229 ~~~~-------~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ 277 (517)
+... .........+|||||+..+. ...++.|+.... .+.+++++|
T Consensus 399 L~~~~~~~~~~~~~~~~~~~llIvDEaSMvd---~~~~~~Ll~~~~-~~~rlilvG 450 (720)
T TIGR01448 399 LGYGPDTFRHNHLEDPIDCDLLIVDESSMMD---TWLALSLLAALP-DHARLLLVG 450 (720)
T ss_pred hhccCCccchhhhhccccCCEEEEeccccCC---HHHHHHHHHhCC-CCCEEEEEC
Confidence 2210 00112345699999999884 455667766432 457888877
No 319
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.38 E-value=0.045 Score=56.81 Aligned_cols=95 Identities=17% Similarity=0.225 Sum_probs=55.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCH-HHHHHHHHHHhCCCCCC-CCCCCHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNT-SEIFSKILLKLQPRKKL-NGSTSPLQYLQ 226 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~-~~i~~~i~~~l~~~~~~-~~~~~~~~~l~ 226 (517)
+..++++|++|+||||++..++..+... .| ..+..|+|-.+... ..-+......++.+... .....+.+...
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~---~g---~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~ 172 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKK---QG---KKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIAR 172 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHh---CC---CeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHH
Confidence 4578899999999999999998876421 12 35778888766442 22233334444332211 11233444444
Q ss_pred HHHHhhhccCCCceEEEEEeCcchhc
Q 010136 227 NLYSQKLHSSVMKMMLIIADELDYLI 252 (517)
Q Consensus 227 ~~~~~~~~~~~~~~~vI~iDEiD~L~ 252 (517)
..+... .....-+||||=.-.+.
T Consensus 173 ~al~~~---~~~~~DvVIIDTaGr~~ 195 (428)
T TIGR00959 173 RALEYA---KENGFDVVIVDTAGRLQ 195 (428)
T ss_pred HHHHHH---HhcCCCEEEEeCCCccc
Confidence 444311 12334589999887664
No 320
>PRK10867 signal recognition particle protein; Provisional
Probab=97.37 E-value=0.046 Score=56.75 Aligned_cols=96 Identities=14% Similarity=0.181 Sum_probs=56.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHH-HHHHHHHHHhCCCCCC-CCCCCHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTS-EIFSKILLKLQPRKKL-NGSTSPLQYLQ 226 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~-~i~~~i~~~l~~~~~~-~~~~~~~~~l~ 226 (517)
+..++++|++|+||||++-.++..+... .| ..+..|+|-.+.... .-+.......+..... .....+.....
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~---~G---~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~ 173 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKK---KK---KKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAK 173 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHh---cC---CcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHH
Confidence 5578899999999999999999877643 12 357778877654422 2233344444432111 12234444444
Q ss_pred HHHHhhhccCCCceEEEEEeCcchhcc
Q 010136 227 NLYSQKLHSSVMKMMLIIADELDYLIT 253 (517)
Q Consensus 227 ~~~~~~~~~~~~~~~vI~iDEiD~L~~ 253 (517)
..+.. ......-+||||=.-.+..
T Consensus 174 ~a~~~---a~~~~~DvVIIDTaGrl~~ 197 (433)
T PRK10867 174 AALEE---AKENGYDVVIVDTAGRLHI 197 (433)
T ss_pred HHHHH---HHhcCCCEEEEeCCCCccc
Confidence 44431 1133456899998877653
No 321
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=97.35 E-value=0.037 Score=55.97 Aligned_cols=175 Identities=17% Similarity=0.234 Sum_probs=105.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQN 227 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~ 227 (517)
-.+..+|+|+- ..++...++.+.......+...+.+.++++.... ... +...+.. . .
T Consensus 16 ~~~~~li~G~d----~~l~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~-~~~----l~~~~~t-------~-------~ 72 (340)
T PRK05574 16 LAPLYLLYGDE----PLLLQEAKDAIRAAARAQGFDERNVFTFDGSETD-WDD----VLEACQS-------L-------P 72 (340)
T ss_pred CCceEEEEcCc----HHHHHHHHHHHHHHHHcCCCceeeEEEeecCCCC-HHH----HHHHhhc-------c-------C
Confidence 46788899976 3555555555555433334444667777776542 222 2222210 0 0
Q ss_pred HHHhhhccCCCceEEEEEeCcchhcccC-chHHHHHhccCC-CCCCcEEEEEEECCCCcchhh---cccccccCCCceEE
Q 010136 228 LYSQKLHSSVMKMMLIIADELDYLITRD-RAVLHDLFMLTT-FPFSRFILIGIANAIDLADRF---LPRLQSMNCKPLVV 302 (517)
Q Consensus 228 ~~~~~~~~~~~~~~vI~iDEiD~L~~~~-~~~L~~l~~~~~-~~~~~v~lI~ian~~~~~~~l---~~~l~sr~~~~~~i 302 (517)
+| +...+|+|++++.+.... .+.+..+.+... .+...++++..++..+-...+ ...+... + ..+
T Consensus 73 lF--------~~~klvii~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~li~~~~~~~~~~k~~k~~k~~~~~-~--~~~ 141 (340)
T PRK05574 73 LF--------SDRKLVELRLPEFLTGAKGEKALKRLEAYLNPLPHPDLLLIVRLPKLDKAKKKSAWFKALKKK-A--VVV 141 (340)
T ss_pred cc--------ccCeEEEEECCCCCCchhHHHHHHHHHHhccCCCCCcEEEEEECCcCCHHHHhhHHHHHHHhC-c--eEE
Confidence 22 234688999999886542 345555655431 122345666555654422222 2334343 3 688
Q ss_pred EeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 010136 303 TFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRSAIEI 360 (517)
Q Consensus 303 ~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~~ 360 (517)
.|.+++..++...+...+.... ..++++++++++. ...||++.+.+-+.....+
T Consensus 142 ~~~~~~~~~~~~~i~~~~~~~g-~~i~~~a~~~L~~---~~~~d~~~l~~El~KL~l~ 195 (340)
T PRK05574 142 EAQPPKEAELPQWIQQRLKQQG-LQIDAAALQLLAE---RVEGNLLALAQELEKLALL 195 (340)
T ss_pred EcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHH---HhCchHHHHHHHHHHHHhh
Confidence 9999999999999998887432 3789999999987 4678888777666655443
No 322
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.34 E-value=0.00022 Score=60.42 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.++|.|+||+||||+++.+++.++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 378999999999999999998873
No 323
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.32 E-value=0.0022 Score=65.30 Aligned_cols=108 Identities=19% Similarity=0.221 Sum_probs=62.6
Q ss_pred ChhHHHHHHhhcCc-----------CCCCCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 106 DVEQMSAVREALHV-----------STAPSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 106 ~~~~~~~~~~~l~~-----------~~~p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
|.+.+.+++..|.. .+-|+.+-.|. .+..|... -+++. ..-|+++.||+|||||+++.++.....
T Consensus 159 Dl~~~~~~R~~FT~dEWid~LlrSiG~~P~~~~~r~-k~~~L~rl-~~fve--~~~Nli~lGp~GTGKThla~~l~~~~a 234 (449)
T TIGR02688 159 DLDYYKEGRKEFTLEEWIDVLIRSIGYEPEGFEARQ-KLLLLARL-LPLVE--PNYNLIELGPKGTGKSYIYNNLSPYVI 234 (449)
T ss_pred CHHHHHHHHhhcCHHHHHHHHHHhcCCCcccCChHH-HHHHHHhh-HHHHh--cCCcEEEECCCCCCHHHHHHHHhHHHH
Confidence 55666666655544 34565554333 33333332 12232 567999999999999999998765521
Q ss_pred HHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhccc
Q 010136 175 DWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITR 254 (517)
Q Consensus 175 ~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~ 254 (517)
. .++ ...+...++..+.... +. .-...-+|+|||+..+...
T Consensus 235 ~--------------~sG-~f~T~a~Lf~~L~~~~-------------------lg-----~v~~~DlLI~DEvgylp~~ 275 (449)
T TIGR02688 235 L--------------ISG-GTITVAKLFYNISTRQ-------------------IG-----LVGRWDVVAFDEVATLKFA 275 (449)
T ss_pred H--------------HcC-CcCcHHHHHHHHHHHH-------------------Hh-----hhccCCEEEEEcCCCCcCC
Confidence 1 111 3445555554444311 11 1234569999999997655
Q ss_pred Cc
Q 010136 255 DR 256 (517)
Q Consensus 255 ~~ 256 (517)
..
T Consensus 276 ~~ 277 (449)
T TIGR02688 276 KP 277 (449)
T ss_pred ch
Confidence 44
No 324
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.30 E-value=0.00013 Score=62.54 Aligned_cols=41 Identities=27% Similarity=0.397 Sum_probs=31.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSE 200 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~ 200 (517)
..++|+|+|-||||||+++..++... .+-|++++.+....+
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~------------~~~~i~isd~vkEn~ 46 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKT------------GLEYIEISDLVKENN 46 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHh------------CCceEehhhHHhhhc
Confidence 46899999999999999999998653 366777776644443
No 325
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.30 E-value=0.0011 Score=69.30 Aligned_cols=89 Identities=19% Similarity=0.210 Sum_probs=53.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCC--CCCCCHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKL--NGSTSPLQYLQ 226 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~--~~~~~~~~~l~ 226 (517)
+..++|+|+||+|||+++..++..+... + ..++|++... +..++... +..++..... -......+.+.
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~----g---~~vlYvs~Ee--s~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~ 149 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA----G---GKVLYVSGEE--SASQIKLR-AERLGLPSDNLYLLAETNLEAIL 149 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc----C---CeEEEEEccc--cHHHHHHH-HHHcCCChhcEEEeCCCCHHHHH
Confidence 4478899999999999999998876521 2 3688998754 34444322 3444321110 00111133333
Q ss_pred HHHHhhhccCCCceEEEEEeCcchhcc
Q 010136 227 NLYSQKLHSSVMKMMLIIADELDYLIT 253 (517)
Q Consensus 227 ~~~~~~~~~~~~~~~vI~iDEiD~L~~ 253 (517)
+.+. ..++.+||||++..+..
T Consensus 150 ~~i~------~~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 150 ATIE------EEKPDLVVIDSIQTMYS 170 (446)
T ss_pred HHHH------hhCCCEEEEechhhhcc
Confidence 3333 34567999999998764
No 326
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=97.28 E-value=0.0016 Score=59.09 Aligned_cols=46 Identities=11% Similarity=0.128 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 130 EDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 130 e~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
+.|.+.+...+.........+.++|.+|+|+|||.++-.++.++..
T Consensus 6 ~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~ 51 (184)
T PF04851_consen 6 PYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR 51 (184)
T ss_dssp HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc
Confidence 3444444444333222125789999999999999999988877763
No 327
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.26 E-value=0.00062 Score=66.92 Aligned_cols=108 Identities=18% Similarity=0.234 Sum_probs=62.8
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHH
Q 010136 147 EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQ 226 (517)
Q Consensus 147 ~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~ 226 (517)
..+.++|++|+-|.|||.|+..+...+.-.. ..-.--..+...+.+.+...... ..+...+.
T Consensus 63 ~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~---------------k~R~HFh~FM~~vH~~l~~l~g~---~dpl~~iA 124 (367)
T COG1485 63 GPVRGLYLWGGVGRGKTMLMDLFYESLPGER---------------KRRLHFHRFMARVHQRLHTLQGQ---TDPLPPIA 124 (367)
T ss_pred CCCceEEEECCCCccHHHHHHHHHhhCCccc---------------cccccHHHHHHHHHHHHHHHcCC---CCccHHHH
Confidence 3567999999999999999999877654211 11111235555666555332211 12233333
Q ss_pred HHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECC
Q 010136 227 NLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANA 281 (517)
Q Consensus 227 ~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~ 281 (517)
.-+. +...||+|||+.--...+.-.|..||+.. -...|++++++|.
T Consensus 125 ~~~~-------~~~~vLCfDEF~VtDI~DAMiL~rL~~~L--f~~GV~lvaTSN~ 170 (367)
T COG1485 125 DELA-------AETRVLCFDEFEVTDIADAMILGRLLEAL--FARGVVLVATSNT 170 (367)
T ss_pred HHHH-------hcCCEEEeeeeeecChHHHHHHHHHHHHH--HHCCcEEEEeCCC
Confidence 3332 23469999999654333333445555432 1247889999997
No 328
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.26 E-value=0.0021 Score=58.72 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=18.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~ 172 (517)
.+++|.|++|+|||+++-..+-.
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~ 47 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALE 47 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHH
Confidence 78999999999999955544433
No 329
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=97.23 E-value=0.0016 Score=62.72 Aligned_cols=198 Identities=15% Similarity=0.101 Sum_probs=101.1
Q ss_pred HHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCC
Q 010136 136 VLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKL 215 (517)
Q Consensus 136 l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~ 215 (517)
+..++...-. .+....++|.+|.|||..++.+++.-. ..+.+......+...+...+........
T Consensus 83 ~~~~~~~A~k--~g~l~~vyg~~g~gKt~a~~~y~~s~p-----------~~~l~~~~p~~~a~~~i~~i~~~~~~~~-- 147 (297)
T COG2842 83 IFFRTRPASK--TGSLVVVYGYAGLGKTQAAKNYAPSNP-----------NALLIEADPSYTALVLILIICAAAFGAT-- 147 (297)
T ss_pred Hhhhhhhhhh--cCceEEEeccccchhHHHHHhhcccCc-----------cceeecCChhhHHHHHHHHHHHHHhccc--
Confidence 4444444433 334788999999999999999876532 3555666555454454444444442211
Q ss_pred CCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCCC---cchhhcccc
Q 010136 216 NGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAID---LADRFLPRL 292 (517)
Q Consensus 216 ~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~---~~~~l~~~l 292 (517)
...-.+....... .......+|++||+|+|....-+.|..+.+. .+.-++++|...-.. .+..-..++
T Consensus 148 --~~~~~d~~~~~~~----~l~~~~~~iivDEA~~L~~~ale~lr~i~d~---~Gi~~vLvG~prL~~~l~~~~~~~~rl 218 (297)
T COG2842 148 --DGTINDLTERLMI----RLRDTVRLIIVDEADRLPYRALEELRRIHDK---TGIGVVLVGMPRLFKVLRRPEDELSRL 218 (297)
T ss_pred --chhHHHHHHHHHH----HHccCcceeeeehhhccChHHHHHHHHHHHh---hCceEEEecChHHHhccccchHHHHHH
Confidence 1111122222221 1255667999999999987666666666544 334555665222100 011111233
Q ss_pred ccc-CCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Q 010136 293 QSM-NCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRSAIEILEAEMR 366 (517)
Q Consensus 293 ~sr-~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~~a~~~~~ 366 (517)
.|| .+.. .+...-.+.+++.++....+. .+.++.+..+. ....|.+|..-.++..++-.|..++.
T Consensus 219 ~srv~v~~-~~~~~~~d~d~~~~~~~~~l~-----~~~~~~v~~~~---~~~~g~~~~L~~~l~~~~~~a~~~~~ 284 (297)
T COG2842 219 YSRVRVGK-LLGEKFPDADELAEIAALVLP-----TEDELVLMQVI---KETEGNIRRLDKILAGAVGTARSNGI 284 (297)
T ss_pred HHHhhhHh-hhhhhhhhhHHHHHHHHhhCc-----cchHHHHHHHH---HhcchhHhHHHHHHhhhhhhhhhccc
Confidence 333 1111 111111122334433332222 23344443332 25678888888888888777665543
No 330
>PF13245 AAA_19: Part of AAA domain
Probab=97.23 E-value=0.00042 Score=53.50 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=19.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.+.++|.||||||||+++...+..+.
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45677799999999977666666555
No 331
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.22 E-value=0.0013 Score=73.29 Aligned_cols=107 Identities=15% Similarity=0.144 Sum_probs=57.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNL 228 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~ 228 (517)
.+.++|.|+||||||++++.+...+... | ..++.+ ++.. ..-..+....+.. ......+...
T Consensus 368 ~~~~il~G~aGTGKTtll~~i~~~~~~~----g---~~V~~~-ApTg----~Aa~~L~~~~g~~------a~Ti~~~~~~ 429 (744)
T TIGR02768 368 GDIAVVVGRAGTGKSTMLKAAREAWEAA----G---YRVIGA-ALSG----KAAEGLQAESGIE------SRTLASLEYA 429 (744)
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHHHhC----C---CeEEEE-eCcH----HHHHHHHhccCCc------eeeHHHHHhh
Confidence 3578999999999999999988766532 2 234433 2221 1111122111110 0111112111
Q ss_pred HHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEE
Q 010136 229 YSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIG 277 (517)
Q Consensus 229 ~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ 277 (517)
+.. .........+|||||+-.+.. ..+..|++.....++++++||
T Consensus 430 ~~~-~~~~~~~~~llIvDEasMv~~---~~~~~Ll~~~~~~~~kliLVG 474 (744)
T TIGR02768 430 WAN-GRDLLSDKDVLVIDEAGMVGS---RQMARVLKEAEEAGAKVVLVG 474 (744)
T ss_pred hcc-CcccCCCCcEEEEECcccCCH---HHHHHHHHHHHhcCCEEEEEC
Confidence 110 011123457999999988843 456667765444567888887
No 332
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.22 E-value=0.0019 Score=74.10 Aligned_cols=149 Identities=13% Similarity=0.109 Sum_probs=88.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQN 227 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~ 227 (517)
-...+++-|.||+|||+++.++++..+. +.+.||.+..++.-++ ++...+...++...-.=..
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~----------kliRINLSeQTdL~DL-------fGsd~Pve~~Gef~w~dap 1604 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGK----------KLIRINLSEQTDLCDL-------FGSDLPVEEGGEFRWMDAP 1604 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcC----------ceEEeeccccchHHHH-------hCCCCCcccCceeEecccH
Confidence 3568999999999999999999988663 5799999887654443 3333333222210000001
Q ss_pred HHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccC------C-----CCCCcEEEEEEECCCCc---chhhccccc
Q 010136 228 LYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLT------T-----FPFSRFILIGIANAIDL---ADRFLPRLQ 293 (517)
Q Consensus 228 ~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~------~-----~~~~~v~lI~ian~~~~---~~~l~~~l~ 293 (517)
++. .+ +.+ .-++|||+.......-+.|...++.. . ....++.|.++-|..+- ..-+.....
T Consensus 1605 fL~--am--r~G-~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~ 1679 (4600)
T COG5271 1605 FLH--AM--RDG-GWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFL 1679 (4600)
T ss_pred HHH--Hh--hcC-CEEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHh
Confidence 111 11 222 34679999766443334455555441 1 12346677776775431 111223344
Q ss_pred ccCCCceEEEeCCCCHHHHHHHHHHHHh
Q 010136 294 SMNCKPLVVTFRAYSKDQIIRILQERLM 321 (517)
Q Consensus 294 sr~~~~~~i~f~p~~~~e~~~IL~~rl~ 321 (517)
.| | .++....|+.+++..|+.....
T Consensus 1680 nR-F--svV~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1680 NR-F--SVVKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred hh-h--heEEecccccchHHHHHHhhCC
Confidence 55 6 6899999999999999886543
No 333
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.19 E-value=0.0016 Score=60.97 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=34.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIF 202 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~ 202 (517)
+..+.|+|+||+|||+++..++...... + -.++|+++.. .++..+.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~----g---~~v~yi~~e~-~~~~rl~ 57 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ----G---KKVVYIDTEG-LSPERFK 57 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC----C---CeEEEEECCC-CCHHHHH
Confidence 4568899999999999999988765431 2 3689999976 3455443
No 334
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.19 E-value=0.0009 Score=61.77 Aligned_cols=46 Identities=20% Similarity=0.174 Sum_probs=32.6
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCC
Q 010136 147 EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTS 194 (517)
Q Consensus 147 ~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~ 194 (517)
..-.+.+|.|||||||||+++-+++.+...-. ++...+++-|+-.+
T Consensus 135 ~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~--~~l~kkv~IiDers 180 (308)
T COG3854 135 NGWLNTLIIGPPQVGKTTLLRDIARLLSDGIN--QFLPKKVGIIDERS 180 (308)
T ss_pred cCceeeEEecCCCCChHHHHHHHHHHhhcccc--ccCCceEEEEeccc
Confidence 34557999999999999999999998764221 33334566666443
No 335
>PRK08118 topology modulation protein; Reviewed
Probab=97.18 E-value=0.00093 Score=60.25 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=22.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
..++|+|+||+||||+++.+++.++
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999988764
No 336
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.15 E-value=0.0042 Score=62.99 Aligned_cols=92 Identities=16% Similarity=0.122 Sum_probs=49.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCC-CHHHHHHHHHHHhCCCCCCCCCCCHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLT-NTSEIFSKILLKLQPRKKLNGSTSPLQYLQ 226 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~-s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~ 226 (517)
.+..++|+||+|+||||++..++..+... .|.. .+..+.+..+. ...+-+....+.++........ ...+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~---~G~~--~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~---~~~l~ 207 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMR---FGAS--KVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKD---GGDLQ 207 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHh---cCCC--eEEEEecccccccHHHHHHHHHHHcCCceEecCC---cccHH
Confidence 36689999999999999999999876421 1211 34555544432 2223333333344332211111 11233
Q ss_pred HHHHhhhccCCCceEEEEEeCcchhc
Q 010136 227 NLYSQKLHSSVMKMMLIIADELDYLI 252 (517)
Q Consensus 227 ~~~~~~~~~~~~~~~vI~iDEiD~L~ 252 (517)
..+.+ .....+|+||.+....
T Consensus 208 ~~l~~-----l~~~DlVLIDTaG~~~ 228 (374)
T PRK14722 208 LALAE-----LRNKHMVLIDTIGMSQ 228 (374)
T ss_pred HHHHH-----hcCCCEEEEcCCCCCc
Confidence 33321 2234688899997653
No 337
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.14 E-value=0.012 Score=61.37 Aligned_cols=169 Identities=15% Similarity=0.105 Sum_probs=92.9
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhc----cCC----CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCC
Q 010136 122 APSTIVCREDEQKKVLEFCKKNLE----EEK----AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCT 193 (517)
Q Consensus 122 ~p~~l~gRe~e~~~l~~~L~~~l~----~~~----~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~ 193 (517)
+-+.+.|.+...+.|...|..... .+. --++++.|.|.|.|+-|+++|++..... +...+.
T Consensus 299 LAPSI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplA-----------I~TTGR 367 (818)
T KOG0479|consen 299 LAPSIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLA-----------IATTGR 367 (818)
T ss_pred cCcccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhccccc-----------ccccCC
Confidence 345789999888777777644322 111 1279999999999999999998754321 111111
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccC-------
Q 010136 194 SLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLT------- 266 (517)
Q Consensus 194 ~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~------- 266 (517)
....... -..+. ......+..|+.-- .++ ...-|++|||||.+..-+.-++++.++-.
T Consensus 368 GSSGVGL-----TAAVT-----tD~eTGERRLEAGA--MVL---ADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKA 432 (818)
T KOG0479|consen 368 GSSGVGL-----TAAVT-----TDQETGERRLEAGA--MVL---ADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKA 432 (818)
T ss_pred CCCCccc-----eeEEe-----eccccchhhhhcCc--eEE---ccCceEEehhcccccchhHHHHHHHHhcceEEeEec
Confidence 1000000 00000 00000012222100 011 12358999999999887777888877652
Q ss_pred ---CCCCCcEEEEEEECCCC--------cchh--hcccccccCCCceEEEeCCCCHHHHHHHHH
Q 010136 267 ---TFPFSRFILIGIANAID--------LADR--FLPRLQSMNCKPLVVTFRAYSKDQIIRILQ 317 (517)
Q Consensus 267 ---~~~~~~v~lI~ian~~~--------~~~~--l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~ 317 (517)
..-+.+|.|++++|.+- ..+. +...|.|| |..--|.+...+.+.=..|-.
T Consensus 433 GIHasLNARCSVlAAANPvyG~Yd~~k~P~eNIgLpDSLLSR-FDLlFv~lD~~d~~~D~~iSe 495 (818)
T KOG0479|consen 433 GIHASLNARCSVLAAANPVYGQYDQSKTPMENIGLPDSLLSR-FDLLFVVLDDIDADIDRMISE 495 (818)
T ss_pred cchhhhccceeeeeecCccccccCCCCChhhccCCcHHHHhh-hcEEEEEeccccchHHHHHHH
Confidence 12457899999999862 1111 23466777 655455555555544444433
No 338
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0017 Score=65.00 Aligned_cols=138 Identities=18% Similarity=0.182 Sum_probs=81.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCC--CCCCHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLN--GSTSPLQYLQ 226 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~--~~~~~~~~l~ 226 (517)
+..++|-|.||.|||||+..++..+... -+++||++.+. ..++ .--++.|+.....- ......+.+.
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~--------~~vLYVsGEES--~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~ 161 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKR--------GKVLYVSGEES--LQQI-KLRADRLGLPTNNLYLLAETNLEDII 161 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhc--------CcEEEEeCCcC--HHHH-HHHHHHhCCCccceEEehhcCHHHHH
Confidence 5568899999999999999999888753 25899999774 3332 22345554221100 0111133444
Q ss_pred HHHHhhhccCCCceEEEEEeCcchhcccC-----------chHHHHHhccCCCCCCcEEEEEEECCCCcchhhccccccc
Q 010136 227 NLYSQKLHSSVMKMMLIIADELDYLITRD-----------RAVLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSM 295 (517)
Q Consensus 227 ~~~~~~~~~~~~~~~vI~iDEiD~L~~~~-----------~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr 295 (517)
..++ ..+|.+++||-|+.+.... .+.-..|+++....+..+.++|--+...-. .=|++.-.
T Consensus 162 ~~l~------~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHVTKeG~I--AGPrvLEH 233 (456)
T COG1066 162 AELE------QEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHVTKEGAI--AGPRVLEH 233 (456)
T ss_pred HHHH------hcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEEEcccccc--cCchheee
Confidence 4443 4678999999999987653 133445666655556667777744421100 12454444
Q ss_pred CCCceEEEeCC
Q 010136 296 NCKPLVVTFRA 306 (517)
Q Consensus 296 ~~~~~~i~f~p 306 (517)
+-..+++|..
T Consensus 234 -mVDtVlyFEG 243 (456)
T COG1066 234 -MVDTVLYFEG 243 (456)
T ss_pred -eeeEEEEEec
Confidence 4444566643
No 339
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=97.12 E-value=0.077 Score=53.76 Aligned_cols=111 Identities=17% Similarity=0.165 Sum_probs=65.8
Q ss_pred ceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHH
Q 010136 239 KMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQE 318 (517)
Q Consensus 239 ~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~ 318 (517)
...+|++...+. ...+.|..++..+ +...++|+ .+..++-...+..-+... -....+.|.+++..++..++..
T Consensus 81 ~~rlViv~~~~~---~~~~~L~~~l~~~--~~~~~lil-~~~~~~~~~kl~k~~~~~-~~~~~v~~~~~~~~~l~~~i~~ 153 (343)
T PRK06585 81 GRRLIWVRAGSK---NLAAALKALLESP--PGDAFIVI-EAGDLKKGSSLRKLFETA-AYAAAIPCYADDERDLARLIDD 153 (343)
T ss_pred CceEEEEECCch---hHHHHHHHHHcCC--CCCcEEEE-EcCCCCcccHHHHHHhcC-CCeeEEecCCCCHHHHHHHHHH
Confidence 345777875432 1234455555443 22333333 344433222222222111 1124678888999999999999
Q ss_pred HHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 010136 319 RLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRSAIEI 360 (517)
Q Consensus 319 rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~~ 360 (517)
++.... ..++++++++++. ...||++.+.+-+.....+
T Consensus 154 ~~~~~g-~~i~~~a~~~L~~---~~g~dl~~l~~EleKL~ly 191 (343)
T PRK06585 154 ELAEAG-LRITPDARALLVA---LLGGDRLASRNEIEKLALY 191 (343)
T ss_pred HHHHCC-CCCCHHHHHHHHH---HhCCCHHHHHHHHHHHHHh
Confidence 987432 3789999999987 4678988777666665543
No 340
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.12 E-value=0.00035 Score=65.48 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=19.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQ 170 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~ 170 (517)
+..++|||+||+|||++++.+.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 5679999999999999999874
No 341
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.12 E-value=0.00099 Score=57.20 Aligned_cols=43 Identities=21% Similarity=0.169 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 130 EDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 130 e~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
+++...+...|...+. .+..++|.|+.|+|||++++.+++.++
T Consensus 5 ~~~t~~l~~~l~~~l~--~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 5 EKAMDKFGKAFAKPLD--FGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHHHhCC--CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4566677777777664 456899999999999999999998875
No 342
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.12 E-value=0.0034 Score=59.72 Aligned_cols=49 Identities=18% Similarity=0.278 Sum_probs=33.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKI 205 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i 205 (517)
.+..++|.|+||||||+++..++..+.. .+ ..++|+.... ++.+++..+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~----~g---~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQ----NG---YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh----CC---CcEEEEeCCC--CHHHHHHHH
Confidence 3557999999999999998776655432 22 2578888443 455655555
No 343
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.12 E-value=0.0038 Score=56.58 Aligned_cols=92 Identities=15% Similarity=0.203 Sum_probs=50.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCC-HHHHHHHHHHHhCCCCC-CCCCCCHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTN-TSEIFSKILLKLQPRKK-LNGSTSPLQYLQNL 228 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s-~~~i~~~i~~~l~~~~~-~~~~~~~~~~l~~~ 228 (517)
.+++.|+||+|||+++..++..+... + ..++.++|..... ....+......++.... ......+.+.+.+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~----g---~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK----G---KKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRA 74 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC----C---CcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHH
Confidence 47899999999999999999887642 2 3578888876542 22223333333321111 11112233333333
Q ss_pred HHhhhccCCCceEEEEEeCcchhc
Q 010136 229 YSQKLHSSVMKMMLIIADELDYLI 252 (517)
Q Consensus 229 ~~~~~~~~~~~~~vI~iDEiD~L~ 252 (517)
+... ......++|||......
T Consensus 75 ~~~~---~~~~~d~viiDt~g~~~ 95 (173)
T cd03115 75 IEHA---REENFDVVIVDTAGRLQ 95 (173)
T ss_pred HHHH---HhCCCCEEEEECcccch
Confidence 3311 12234467799876653
No 344
>PHA02624 large T antigen; Provisional
Probab=97.11 E-value=0.0014 Score=69.28 Aligned_cols=48 Identities=17% Similarity=0.133 Sum_probs=35.0
Q ss_pred HHHhhccC-CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCC
Q 010136 140 CKKNLEEE-KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTN 197 (517)
Q Consensus 140 L~~~l~~~-~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s 197 (517)
++..+.+- ....++|+||||||||+++.++++.|+. .++.||++...+
T Consensus 421 lk~~l~giPKk~~il~~GPpnTGKTtf~~sLl~~L~G----------~vlsVNsPt~ks 469 (647)
T PHA02624 421 LKLIVENVPKRRYWLFKGPVNSGKTTLAAALLDLCGG----------KSLNVNCPPDKL 469 (647)
T ss_pred HHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHcCC----------eEEEeeCCcchh
Confidence 44444432 2448999999999999999999998852 366788766533
No 345
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=97.10 E-value=0.049 Score=53.97 Aligned_cols=112 Identities=16% Similarity=0.168 Sum_probs=74.1
Q ss_pred ceEEEEEeCcchhccc-CchHHHHHhccCCCCCCcEEEEEEECCCCcchhhccccc--ccCCCceEEEeCCCCHHHHHHH
Q 010136 239 KMMLIIADELDYLITR-DRAVLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQ--SMNCKPLVVTFRAYSKDQIIRI 315 (517)
Q Consensus 239 ~~~vI~iDEiD~L~~~-~~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~--sr~~~~~~i~f~p~~~~e~~~I 315 (517)
...||+|++++.+... ..+.|..++.- +....++|..++..+....+...+. ++ + ..+.|.+++..++..+
T Consensus 46 ~~kliii~~~~~~~~~~~~~~L~~~l~~---~~~~~~~i~~~~~~~~~~~~~k~~~~~~~-~--~~i~~~~~~~~~~~~~ 119 (302)
T TIGR01128 46 ERRLVELRNPEGKPGAKGLKALEEYLAN---PPPDTLLLIEAPKLDKRKKLTKWLKALKN-A--QIVECKTPKEQELPRW 119 (302)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHhc---CCCCEEEEEecCCCCHhHHHHHHHHHhcC-e--eEEEecCCCHHHHHHH
Confidence 3468999999987542 22445554443 2334555555665442222212222 23 3 6899999999999999
Q ss_pred HHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 010136 316 LQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRSAIEI 360 (517)
Q Consensus 316 L~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~~ 360 (517)
+...+... ...++++++++++. ...||++.+.+-+.....+
T Consensus 120 i~~~~~~~-g~~i~~~a~~~l~~---~~~~d~~~l~~el~KL~~~ 160 (302)
T TIGR01128 120 IQARLKKL-GLRIDPDAVQLLAE---LVEGNLLAIAQELEKLALY 160 (302)
T ss_pred HHHHHHHc-CCCCCHHHHHHHHH---HhCcHHHHHHHHHHHHHhh
Confidence 99988743 23689999999987 4678999888888776544
No 346
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.10 E-value=0.13 Score=53.24 Aligned_cols=152 Identities=9% Similarity=0.056 Sum_probs=74.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCH-HHHHHHHHHHhCCCCCC-CCCCCHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNT-SEIFSKILLKLQPRKKL-NGSTSPLQYLQ 226 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~-~~i~~~i~~~l~~~~~~-~~~~~~~~~l~ 226 (517)
+..++|+|++|+||||++..++..+.. .| ..+.-|+|-.+... ..-+......++.+... .....+.....
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~----~G---~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~ 172 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQR----KG---FKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIAS 172 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH----CC---CCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHH
Confidence 567899999999999999999987653 23 25677777655421 11112223333322111 11222333333
Q ss_pred HHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCC-CCCcEEEEEEECC-CCcchhhcccccccCCCceEEEe
Q 010136 227 NLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF-PFSRFILIGIANA-IDLADRFLPRLQSMNCKPLVVTF 304 (517)
Q Consensus 227 ~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~-~~~~v~lI~ian~-~~~~~~l~~~l~sr~~~~~~i~f 304 (517)
+.+... .....-+||||=+-.+... ...+.++...... ....+.++.-+.. .+.. .....+... ....-+.|
T Consensus 173 ~~l~~~---~~~~~DvViIDTaGr~~~d-~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~-~~a~~F~~~-~~~~g~Il 246 (429)
T TIGR01425 173 EGVEKF---KKENFDIIIVDTSGRHKQE-DSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAE-AQAKAFKDS-VDVGSVII 246 (429)
T ss_pred HHHHHH---HhCCCCEEEEECCCCCcch-HHHHHHHHHHhhhcCCcEEEEEeccccChhHH-HHHHHHHhc-cCCcEEEE
Confidence 333211 1224568999987665332 2333433333211 1223344432221 1111 112233332 34567888
Q ss_pred CCCCHHHHH
Q 010136 305 RAYSKDQII 313 (517)
Q Consensus 305 ~p~~~~e~~ 313 (517)
.-+|.+...
T Consensus 247 TKlD~~arg 255 (429)
T TIGR01425 247 TKLDGHAKG 255 (429)
T ss_pred ECccCCCCc
Confidence 888876544
No 347
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.07 E-value=0.0029 Score=57.51 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=24.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHYLVDW 176 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~l~~~ 176 (517)
+-++++|+||+|||+.++.+++.|...
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 357899999999999999999999864
No 348
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=97.06 E-value=0.04 Score=55.40 Aligned_cols=112 Identities=17% Similarity=0.161 Sum_probs=64.4
Q ss_pred ceEEEEEeCcchhcccCch---HHHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCC---CCHHHH
Q 010136 239 KMMLIIADELDYLITRDRA---VLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRA---YSKDQI 312 (517)
Q Consensus 239 ~~~vI~iDEiD~L~~~~~~---~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p---~~~~e~ 312 (517)
...+|+|++++.+.....+ .|..+++.+ +...++|+..++..|-...+...+... . ....|.+ |+.+++
T Consensus 61 ~~rlVvv~~~~~~~~~~~~~~~~L~~~l~~~--~~~~~li~~~~~~~d~r~k~~k~l~k~-~--~~~~~~~~~~~~~~~l 135 (326)
T PRK07452 61 GGRLVWLKNSPLCQGCSEELLAELERTLPLI--PENTHLLLTNTKKPDGRLKSTKLLQKL-A--EEKEFSLIPPWDTEGL 135 (326)
T ss_pred CceEEEEeCchhhccCCHHHHHHHHHHHcCC--CCCcEEEEEeCCCcchHHHHHHHHHHc-e--eEEEecCCCcccHHHH
Confidence 3467888988766433333 344444332 222333333344333222222223332 2 3566654 467789
Q ss_pred HHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 010136 313 IRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRSAIE 359 (517)
Q Consensus 313 ~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~ 359 (517)
..++..++.... ..++++++++++. ...+|++.+.+-+...+.
T Consensus 136 ~~~i~~~~~~~g-~~i~~~a~~~L~~---~~g~dl~~l~~EleKL~l 178 (326)
T PRK07452 136 KQLVERTAQELG-VKLTPEAAELLAE---AVGNDSRRLYNELEKLAL 178 (326)
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHH---HhCccHHHHHHHHHHHHH
Confidence 999999987432 3789999999987 467888877666665553
No 349
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.06 E-value=0.0032 Score=71.38 Aligned_cols=104 Identities=18% Similarity=0.129 Sum_probs=57.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLY 229 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~ 229 (517)
..++|.|.+|||||++++.+...+.. .|. .++-+ ++.. . -+..|.... +.. ...+..++
T Consensus 363 ~v~vv~G~AGTGKTT~l~~~~~~~e~----~G~---~V~~~-ApTG----k----AA~~L~e~t----Gi~-a~TI~sll 421 (988)
T PRK13889 363 DLGVVVGYAGTGKSAMLGVAREAWEA----AGY---EVRGA-ALSG----I----AAENLEGGS----GIA-SRTIASLE 421 (988)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHH----cCC---eEEEe-cCcH----H----HHHHHhhcc----Ccc-hhhHHHHH
Confidence 46789999999999999887665543 222 23332 2221 1 112221111 111 22233332
Q ss_pred Hhh--hccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEE
Q 010136 230 SQK--LHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIG 277 (517)
Q Consensus 230 ~~~--~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ 277 (517)
... .........||||||+-.+. ...+..|+......+.+|++||
T Consensus 422 ~~~~~~~~~l~~~~vlIVDEASMv~---~~~m~~LL~~a~~~garvVLVG 468 (988)
T PRK13889 422 HGWGQGRDLLTSRDVLVIDEAGMVG---TRQLERVLSHAADAGAKVVLVG 468 (988)
T ss_pred hhhcccccccccCcEEEEECcccCC---HHHHHHHHHhhhhCCCEEEEEC
Confidence 210 00012345699999998874 3456777766545678888887
No 350
>PTZ00494 tuzin-like protein; Provisional
Probab=97.02 E-value=0.068 Score=54.55 Aligned_cols=175 Identities=13% Similarity=0.111 Sum_probs=97.2
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHH
Q 010136 123 PSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIF 202 (517)
Q Consensus 123 p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~ 202 (517)
+...+.|++|-..+.+.|.. +....|..+.|+|..||||+++.+.....-. ...++|+-.. ..+.+
T Consensus 370 ~~~~V~R~~eE~~vRqvL~q-ld~aHPRIvV~TG~~GcGKSslcRsAvrkE~----------~paV~VDVRg---~EDtL 435 (664)
T PTZ00494 370 EAFEVRREDEEALVRSVLTQ-MAPSHPRIVALAGGSGGGRCVPCRRAVRVEG----------VALVHVDVGG---TEDTL 435 (664)
T ss_pred cccccchhhHHHHHHHHHhh-ccCCCCcEEEEecCCCCCchHHHHHHHHHcC----------CCeEEEEecC---CcchH
Confidence 34589999988878777766 4456788999999999999999998765422 2456665433 24456
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCc-e-EEEEEeCcchhcccCchHHHHHhccC-CCCCCcEEEEEEE
Q 010136 203 SKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMK-M-MLIIADELDYLITRDRAVLHDLFMLT-TFPFSRFILIGIA 279 (517)
Q Consensus 203 ~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~-~vI~iDEiD~L~~~~~~~L~~l~~~~-~~~~~~v~lI~ia 279 (517)
..+.+.|+......=| ...+-+.+.+........+. | +|+=|-|-+.|.. +..+..-+. ...-+++++=.--
T Consensus 436 rsVVKALgV~nve~CG-DlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~R----VYnE~vaLacDrRlCHvv~EVpl 510 (664)
T PTZ00494 436 RSVVRALGVSNVEVCG-DLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGR----VYGEVVSLVSDCQACHIVLAVPM 510 (664)
T ss_pred HHHHHHhCCCChhhhc-cHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHH----HHHHHHHHHccchhheeeeechH
Confidence 6777888654322111 12333444444322212222 2 3444667666532 222222221 1111233321111
Q ss_pred CCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhh
Q 010136 280 NAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMEL 323 (517)
Q Consensus 280 n~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~ 323 (517)
..+......+|| + ..+.+++++..|-.++.++.+..+
T Consensus 511 ESLT~~n~~LPR-----L--DFy~VPnFSr~QAf~YtqH~lDal 547 (664)
T PTZ00494 511 KALTPLNVSSRR-----L--DFYCIPPFSRRQAFAYAEHTLDAL 547 (664)
T ss_pred hhhchhhccCcc-----c--eeEecCCcCHHHHHHHHhcccchh
Confidence 111122223343 3 456789999999999999988754
No 351
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.00 E-value=0.0097 Score=58.50 Aligned_cols=61 Identities=25% Similarity=0.272 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhhcc--------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCC
Q 010136 131 DEQKKVLEFCKKNLEE--------EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLT 196 (517)
Q Consensus 131 ~e~~~l~~~L~~~l~~--------~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~ 196 (517)
.....+.+.|...+.. ..+..++|+||+|+||||++..++..+.... +. ..+..|++....
T Consensus 168 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~---g~--~~V~li~~D~~r 236 (282)
T TIGR03499 168 DAWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLEH---GN--KKVALITTDTYR 236 (282)
T ss_pred HHHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHHc---CC--CeEEEEECCccc
Confidence 3445555666554431 1345788999999999999999988775421 11 246667765543
No 352
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=96.99 E-value=0.00083 Score=66.80 Aligned_cols=111 Identities=19% Similarity=0.225 Sum_probs=60.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHH-------HHHhCCCCCCCC-C-
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKI-------LLKLQPRKKLNG-S- 218 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i-------~~~l~~~~~~~~-~- 218 (517)
.+.++||||.-|||||+++..+...+......+ -++ -..+...+ ..+.+....... +
T Consensus 113 ~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkq------RvH--------Fh~fM~~VH~r~H~~k~~~~~~~~~~a~~~ 178 (467)
T KOG2383|consen 113 PPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQ------RVH--------FHGFMLSVHKRMHELKQEQGAEKPGYAKSW 178 (467)
T ss_pred CCceEEEecccCcchhHHHHHHhhcCCchhhhh------hhh--------HHHHHHHHHHHHHHHHHhccccCccccccc
Confidence 377999999999999999988765543211110 011 12233333 222222111111 1
Q ss_pred -CCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECC
Q 010136 219 -TSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANA 281 (517)
Q Consensus 219 -~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~ 281 (517)
..+...+...+. ...+||++||++--.-.+.=+|..||... -...+++++++|.
T Consensus 179 ~~Dpl~~vA~eIa-------~ea~lLCFDEfQVTDVADAmiL~rLf~~L--f~~GvVlvATSNR 233 (467)
T KOG2383|consen 179 EIDPLPVVADEIA-------EEAILLCFDEFQVTDVADAMILKRLFEHL--FKNGVVLVATSNR 233 (467)
T ss_pred cCCccHHHHHHHh-------hhceeeeechhhhhhHHHHHHHHHHHHHH--HhCCeEEEEeCCC
Confidence 123444444443 12479999999765333334566666542 1237888888886
No 353
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.96 E-value=0.0031 Score=59.78 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=30.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCC
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCT 193 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~ 193 (517)
+..++|+|+||+|||+++..++.++... + ..++|+.+.
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~----~---~~v~yi~~e 60 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKN----G---KKVIYIDTE 60 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC----C---CeEEEEECC
Confidence 4468899999999999999998776431 2 368899887
No 354
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.96 E-value=0.0039 Score=59.51 Aligned_cols=47 Identities=19% Similarity=0.316 Sum_probs=33.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSK 204 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~ 204 (517)
+..++|+|+||+|||+++..++.+... .+ -.++|++... ++..+...
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~----~g---~~~~y~~~e~--~~~~~~~~ 71 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALK----QG---KKVYVITTEN--TSKSYLKQ 71 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHh----CC---CEEEEEEcCC--CHHHHHHH
Confidence 557889999999999999999755322 12 2578888753 45555444
No 355
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.96 E-value=0.013 Score=60.95 Aligned_cols=149 Identities=13% Similarity=0.096 Sum_probs=73.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH-HHHHhcCCCCceEEEEeCCCCCCHH-HHHHHHHHHhCCCCCCCCCCCHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLV-DWAKEAGLQQPEVFSINCTSLTNTS-EIFSKILLKLQPRKKLNGSTSPLQYLQ 226 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~-~~~~~~~~~~~~~v~vn~~~~~s~~-~i~~~i~~~l~~~~~~~~~~~~~~~l~ 226 (517)
+..++|.||+|+||||++..++..+. .. .+ ..+..|++....... .-+..-...++..... ... ...+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~---~g---~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~--~~~-~~~l~ 291 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY---GK---KKVALITLDTYRIGAVEQLKTYAKIMGIPVEV--VYD-PKELA 291 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc---CC---CeEEEEECCccHHHHHHHHHHHHHHhCCceEc--cCC-HHhHH
Confidence 45789999999999999999987765 21 11 357778776543211 1111112222211111 111 23344
Q ss_pred HHHHhhhccCCCceEEEEEeCcchhcccC--chHHHHHhccCCCCCCcEEEEEEECCC-CcchhhcccccccCCCceEEE
Q 010136 227 NLYSQKLHSSVMKMMLIIADELDYLITRD--RAVLHDLFMLTTFPFSRFILIGIANAI-DLADRFLPRLQSMNCKPLVVT 303 (517)
Q Consensus 227 ~~~~~~~~~~~~~~~vI~iDEiD~L~~~~--~~~L~~l~~~~~~~~~~v~lI~ian~~-~~~~~l~~~l~sr~~~~~~i~ 303 (517)
..+.. ....-+||||..-...... ...|..+++....+ ..+.++..++.- .-...+...+.. +....+.
T Consensus 292 ~~l~~-----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~-~~~~LVl~a~~~~~~l~~~~~~f~~--~~~~~vI 363 (424)
T PRK05703 292 KALEQ-----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEP-IDVYLVLSATTKYEDLKDIYKHFSR--LPLDGLI 363 (424)
T ss_pred HHHHH-----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCC-CeEEEEEECCCCHHHHHHHHHHhCC--CCCCEEE
Confidence 44431 2235789999876543221 13455565521112 344444434321 111122223322 3345677
Q ss_pred eCCCCHHHHHH
Q 010136 304 FRAYSKDQIIR 314 (517)
Q Consensus 304 f~p~~~~e~~~ 314 (517)
|..++......
T Consensus 364 ~TKlDet~~~G 374 (424)
T PRK05703 364 FTKLDETSSLG 374 (424)
T ss_pred Eeccccccccc
Confidence 88877654433
No 356
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.96 E-value=0.0029 Score=62.86 Aligned_cols=90 Identities=13% Similarity=0.059 Sum_probs=52.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCC---CCCCCCHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKK---LNGSTSPLQYL 225 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~---~~~~~~~~~~l 225 (517)
+..+.|+||||+|||+++..++.+.... + -.++||++....++. .+..++.... ........+.+
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~----g---~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l 122 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKA----G---GTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQAL 122 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc----C---CcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHH
Confidence 4468899999999999999887776432 2 257899887654432 2333322110 00111212222
Q ss_pred HHHHHhhhccCCCceEEEEEeCcchhcc
Q 010136 226 QNLYSQKLHSSVMKMMLIIADELDYLIT 253 (517)
Q Consensus 226 ~~~~~~~~~~~~~~~~vI~iDEiD~L~~ 253 (517)
.. +.. ........+||||-+..|..
T Consensus 123 ~~-~~~--li~~~~~~lIVIDSv~al~~ 147 (321)
T TIGR02012 123 EI-AET--LVRSGAVDIIVVDSVAALVP 147 (321)
T ss_pred HH-HHH--HhhccCCcEEEEcchhhhcc
Confidence 22 221 11245678999999998864
No 357
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.95 E-value=0.023 Score=57.64 Aligned_cols=171 Identities=11% Similarity=0.061 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHhhc-----cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCC-HHHHHH
Q 010136 130 EDEQKKVLEFCKKNLE-----EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTN-TSEIFS 203 (517)
Q Consensus 130 e~e~~~l~~~L~~~l~-----~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s-~~~i~~ 203 (517)
+.....+.+.+...+. ...+..+.|.||+|+||||++..++..+... + ..+..+++....- ...-+.
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~----G---kkVglI~aDt~RiaAvEQLk 289 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGK----K---KTVGFITTDHSRIGTVQQLQ 289 (436)
T ss_pred HHHHHHHHHHHHHHhccccccccCCcEEEEECCCCCcHHHHHHHHHHHHHHc----C---CcEEEEecCCcchHHHHHHH
Confidence 3444445555444332 1234689999999999999999999877532 2 2466677655431 111122
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHH---HHhccCCCCCCcEEEE-EEE
Q 010136 204 KILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLH---DLFMLTTFPFSRFILI-GIA 279 (517)
Q Consensus 204 ~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~---~l~~~~~~~~~~v~lI-~ia 279 (517)
.....++-.... ... ...+...+... ......-+||||-+-..... ...+. .+++... +. .+.++ .++
T Consensus 290 ~yae~lgipv~v--~~d-~~~L~~aL~~l--k~~~~~DvVLIDTaGRs~kd-~~lm~EL~~~lk~~~-Pd-evlLVLsAT 361 (436)
T PRK11889 290 DYVKTIGFEVIA--VRD-EAAMTRALTYF--KEEARVDYILIDTAGKNYRA-SETVEEMIETMGQVE-PD-YICLTLSAS 361 (436)
T ss_pred HHhhhcCCcEEe--cCC-HHHHHHHHHHH--HhccCCCEEEEeCccccCcC-HHHHHHHHHHHhhcC-CC-eEEEEECCc
Confidence 222222211110 112 33444444321 11123468999988775432 23333 3333221 22 33333 222
Q ss_pred CCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHH
Q 010136 280 NAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQ 317 (517)
Q Consensus 280 n~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~ 317 (517)
....-...+..++.. +....+.|.-+|.....-.+-
T Consensus 362 tk~~d~~~i~~~F~~--~~idglI~TKLDET~k~G~iL 397 (436)
T PRK11889 362 MKSKDMIEIITNFKD--IHIDGIVFTKFDETASSGELL 397 (436)
T ss_pred cChHHHHHHHHHhcC--CCCCEEEEEcccCCCCccHHH
Confidence 111111122233333 345788888888765544433
No 358
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.91 E-value=0.00094 Score=58.28 Aligned_cols=40 Identities=25% Similarity=0.434 Sum_probs=31.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHh
Q 010136 152 LYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKL 209 (517)
Q Consensus 152 lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l 209 (517)
+-|.|+|||||||+++.+++.++ + - +.+...+|+.++.+.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~g-------l-----~------~vsaG~iFR~~A~e~ 42 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLG-------L-----K------LVSAGTIFREMARER 42 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhC-------C-----c------eeeccHHHHHHHHHc
Confidence 67899999999999999988764 1 1 223456889999888
No 359
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.90 E-value=0.0041 Score=56.16 Aligned_cols=87 Identities=18% Similarity=0.120 Sum_probs=50.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYS 230 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~ 230 (517)
.++|.|+||+|||+++..++..+. ..++|+..... ...+....+..........+........|.+++.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~----------~~~~~iat~~~-~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~ 71 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG----------LQVLYIATAQP-FDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLR 71 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC----------CCcEeCcCCCC-ChHHHHHHHHHHHhcCCCCCeEecccccHHHHHH
Confidence 589999999999999999876642 13567766543 3344445554444322222222211223444443
Q ss_pred hhhccCCCceEEEEEeCcchhc
Q 010136 231 QKLHSSVMKMMLIIADELDYLI 252 (517)
Q Consensus 231 ~~~~~~~~~~~vI~iDEiD~L~ 252 (517)
.. .....+++||-+..+.
T Consensus 72 ~~----~~~~~~VlID~Lt~~~ 89 (170)
T PRK05800 72 AD----AAPGRCVLVDCLTTWV 89 (170)
T ss_pred hh----cCCCCEEEehhHHHHH
Confidence 10 1224478999888774
No 360
>PRK06696 uridine kinase; Validated
Probab=96.88 E-value=0.0027 Score=60.16 Aligned_cols=61 Identities=13% Similarity=0.157 Sum_probs=43.0
Q ss_pred CcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCC
Q 010136 128 CREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLT 196 (517)
Q Consensus 128 gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~ 196 (517)
.|.+.+++|.+.+... ....+..|.|.|++|+||||+++.+++.|... | ..++.++.-.+.
T Consensus 2 ~~~~~~~~la~~~~~~-~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~----g---~~v~~~~~Ddf~ 62 (223)
T PRK06696 2 SRKQLIKELAEHILTL-NLTRPLRVAIDGITASGKTTFADELAEEIKKR----G---RPVIRASIDDFH 62 (223)
T ss_pred cHHHHHHHHHHHHHHh-CCCCceEEEEECCCCCCHHHHHHHHHHHHHHc----C---CeEEEecccccc
Confidence 3667777777776552 23456688899999999999999999988642 2 245555554443
No 361
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.87 E-value=0.0016 Score=60.45 Aligned_cols=26 Identities=31% Similarity=0.571 Sum_probs=23.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
+.++|+||+|+||||++++++..+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57899999999999999999887753
No 362
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.87 E-value=0.0027 Score=61.34 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 152 LYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 152 lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
++|+|+||+||||+++.+++.+..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999988753
No 363
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.87 E-value=0.0033 Score=58.21 Aligned_cols=151 Identities=12% Similarity=0.043 Sum_probs=78.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCC-HHHHHHHHHHHhCCCCCC-CCCCCHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTN-TSEIFSKILLKLQPRKKL-NGSTSPLQYLQ 226 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s-~~~i~~~i~~~l~~~~~~-~~~~~~~~~l~ 226 (517)
|..++|+||+|+||||++-.++..+... + ..+..+++-.++- ..+-++..++.++-+... .....+.+.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~----~---~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~ 73 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK----G---KKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAR 73 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT----T-----EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc----c---ccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHH
Confidence 3568899999999999999999887643 2 2355555544432 233445566666543221 11223445555
Q ss_pred HHHHhhhccCCCceEEEEEeCcchhcccC--chHHHHHhccCCCCCCcEEEEEEECCCCcchhhc--ccccccCCCceEE
Q 010136 227 NLYSQKLHSSVMKMMLIIADELDYLITRD--RAVLHDLFMLTTFPFSRFILIGIANAIDLADRFL--PRLQSMNCKPLVV 302 (517)
Q Consensus 227 ~~~~~~~~~~~~~~~vI~iDEiD~L~~~~--~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~--~~l~sr~~~~~~i 302 (517)
+.+... ...+.-+|+||=.-...... .+.|..+++.. ....+.++.-++.- .+.+. .+.... +....+
T Consensus 74 ~~l~~~---~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~--~~~~~~LVlsa~~~--~~~~~~~~~~~~~-~~~~~l 145 (196)
T PF00448_consen 74 EALEKF---RKKGYDLVLIDTAGRSPRDEELLEELKKLLEAL--NPDEVHLVLSATMG--QEDLEQALAFYEA-FGIDGL 145 (196)
T ss_dssp HHHHHH---HHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHH--SSSEEEEEEEGGGG--GHHHHHHHHHHHH-SSTCEE
T ss_pred HHHHHH---hhcCCCEEEEecCCcchhhHHHHHHHHHHhhhc--CCccceEEEecccC--hHHHHHHHHHhhc-ccCceE
Confidence 544421 12233588999875543221 12344444433 23455555544421 12221 122222 445678
Q ss_pred EeCCCCHHHHHH
Q 010136 303 TFRAYSKDQIIR 314 (517)
Q Consensus 303 ~f~p~~~~e~~~ 314 (517)
.|..+|.....-
T Consensus 146 IlTKlDet~~~G 157 (196)
T PF00448_consen 146 ILTKLDETARLG 157 (196)
T ss_dssp EEESTTSSSTTH
T ss_pred EEEeecCCCCcc
Confidence 888887754433
No 364
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.86 E-value=0.0059 Score=72.00 Aligned_cols=108 Identities=14% Similarity=0.130 Sum_probs=59.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNL 228 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~ 228 (517)
.+.++|.|.||||||++++.++..+.......+. .++-+ ++. ......|. +. +. ....+..+
T Consensus 852 dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~---~V~gl-APT----gkAa~~L~-e~--------Gi-~A~TIasf 913 (1623)
T PRK14712 852 DRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERP---RVVGL-GPT----HRAVGEMR-SA--------GV-DAQTLASF 913 (1623)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCc---eEEEE-ech----HHHHHHHH-Hh--------Cc-hHhhHHHH
Confidence 4689999999999999999998876543322221 22222 222 11112221 11 11 13344444
Q ss_pred HHhh-----h-ccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEE
Q 010136 229 YSQK-----L-HSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIG 277 (517)
Q Consensus 229 ~~~~-----~-~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ 277 (517)
+... . ........||||||+-.+.. ..++.|+......+.++++||
T Consensus 914 L~~~~~~~~~~~~~~~~~~llIVDEASMV~~---~~m~~ll~~~~~~garvVLVG 965 (1623)
T PRK14712 914 LHDTQLQQRSGETPDFSNTLFLLDESSMVGN---TDMARAYALIAAGGGRAVASG 965 (1623)
T ss_pred hccccchhhcccCCCCCCcEEEEEccccccH---HHHHHHHHhhhhCCCEEEEEc
Confidence 4310 0 00112357999999988854 344555544433567888887
No 365
>PRK05973 replicative DNA helicase; Provisional
Probab=96.83 E-value=0.01 Score=56.46 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=33.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKI 205 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i 205 (517)
+..++|.|+||+|||+++..++..... .| -.++|++.... +.++...+
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~----~G---e~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMK----SG---RTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHh----cC---CeEEEEEEeCC--HHHHHHHH
Confidence 457889999999999999998766532 12 24777776543 45554443
No 366
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.82 E-value=0.003 Score=61.36 Aligned_cols=28 Identities=14% Similarity=0.245 Sum_probs=24.3
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 147 EKAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 147 ~~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
+...+++|.||+|+||||+++.++..+.
T Consensus 109 ~~~~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 109 NRVLNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHhCccC
Confidence 3347899999999999999999988765
No 367
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.81 E-value=0.0032 Score=66.02 Aligned_cols=89 Identities=16% Similarity=0.139 Sum_probs=52.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCC--CCCCCHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKL--NGSTSPLQYLQ 226 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~--~~~~~~~~~l~ 226 (517)
+..++|+|+||+|||+++..++..+... + -+++|++... +..++... +..++-.... -......+.+.
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~----g---~kvlYvs~EE--s~~qi~~r-a~rlg~~~~~l~~~~e~~~~~I~ 163 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKN----Q---MKVLYVSGEE--SLQQIKMR-AIRLGLPEPNLYVLSETNWEQIC 163 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhc----C---CcEEEEECcC--CHHHHHHH-HHHcCCChHHeEEcCCCCHHHHH
Confidence 4578899999999999999998776531 2 2578888754 34443221 2233211000 00111133344
Q ss_pred HHHHhhhccCCCceEEEEEeCcchhcc
Q 010136 227 NLYSQKLHSSVMKMMLIIADELDYLIT 253 (517)
Q Consensus 227 ~~~~~~~~~~~~~~~vI~iDEiD~L~~ 253 (517)
..+. ..++.+||||.+..+..
T Consensus 164 ~~i~------~~~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 164 ANIE------EENPQACVIDSIQTLYS 184 (454)
T ss_pred HHHH------hcCCcEEEEecchhhcc
Confidence 4443 34567999999998754
No 368
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.80 E-value=0.0032 Score=62.55 Aligned_cols=69 Identities=17% Similarity=0.230 Sum_probs=54.2
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccC--CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEE--KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSE 200 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~--~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~ 200 (517)
+.++|-++.++++..++..+..+. ....+||.||+|+|||++++.+.+.+.+. ..+...-|+...+|-.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y--------~~Y~l~~~Pm~e~PL~ 131 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY--------PIYTLKGCPMHEEPLH 131 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE--------EEEEecCCccccChhh
Confidence 368999999999999999987654 35589999999999999999998888753 1344466666656544
No 369
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.80 E-value=0.0089 Score=68.36 Aligned_cols=106 Identities=15% Similarity=0.106 Sum_probs=58.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQN 227 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~ 227 (517)
..+..+|.|++|||||++++.+...+.. .|. .++-+ +... ..-..|.+..+.. ...+..
T Consensus 396 ~~r~~~v~G~AGTGKTt~l~~~~~~~e~----~G~---~V~g~-ApTg----kAA~~L~e~~Gi~---------a~TIas 454 (1102)
T PRK13826 396 PARIAAVVGRAGAGKTTMMKAAREAWEA----AGY---RVVGG-ALAG----KAAEGLEKEAGIQ---------SRTLSS 454 (1102)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHH----cCC---eEEEE-cCcH----HHHHHHHHhhCCC---------eeeHHH
Confidence 3567899999999999999998876543 222 23322 2221 1112232222111 111222
Q ss_pred HHHhh--hccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEE
Q 010136 228 LYSQK--LHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIG 277 (517)
Q Consensus 228 ~~~~~--~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ 277 (517)
++... ....-....||||||+-.+. ...++.|+......+.++++||
T Consensus 455 ~ll~~~~~~~~l~~~~vlVIDEAsMv~---~~~m~~Ll~~~~~~garvVLVG 503 (1102)
T PRK13826 455 WELRWNQGRDQLDNKTVFVLDEAGMVA---SRQMALFVEAVTRAGAKLVLVG 503 (1102)
T ss_pred HHhhhccCccCCCCCcEEEEECcccCC---HHHHHHHHHHHHhcCCEEEEEC
Confidence 21100 00112345799999998884 3556666666544567888887
No 370
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.77 E-value=0.051 Score=62.56 Aligned_cols=149 Identities=22% Similarity=0.249 Sum_probs=84.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQN 227 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~ 227 (517)
...+++++||||+|||.++.--++.-. .+.++++|-...++...+++.+.+...-... +|.. .
T Consensus 1493 t~R~~i~cGppGSgK~mlM~~sLrs~~---------~~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~--tg~~------~ 1555 (3164)
T COG5245 1493 TLRSYIYCGPPGSGKEMLMCPSLRSEL---------ITEVKYFNFSTCTMTPSKLSVLERETEYYPN--TGVV------R 1555 (3164)
T ss_pred ccceEEEECCCCCccchhcchhhhhhh---------heeeeEEeeccccCCHHHHHHHHhhceeecc--CCeE------E
Confidence 457899999999999998654433211 1579999998888777766666555421111 0100 0
Q ss_pred HHHhhhccCCCceEEEEEeCcchhccc----Cch---HHHHHhcc----CCC-----CCCcEEEEEEECCCCcchhh--c
Q 010136 228 LYSQKLHSSVMKMMLIIADELDYLITR----DRA---VLHDLFML----TTF-----PFSRFILIGIANAIDLADRF--L 289 (517)
Q Consensus 228 ~~~~~~~~~~~~~~vI~iDEiD~L~~~----~~~---~L~~l~~~----~~~-----~~~~v~lI~ian~~~~~~~l--~ 289 (517)
...+..-+..|||.|||. |... .++ .|+.|++. ... .-.++++.|++|+..-+.+. .
T Consensus 1556 ----l~PK~~vK~lVLFcDeIn-Lp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~ 1630 (3164)
T COG5245 1556 ----LYPKPVVKDLVLFCDEIN-LPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYY 1630 (3164)
T ss_pred ----EccCcchhheEEEeeccC-CccccccCCCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccH
Confidence 012233456799999998 4322 122 13334332 111 22578999999976433332 2
Q ss_pred ccccccCCCceEEEeCCC-CHHHHHHHHHHHHhh
Q 010136 290 PRLQSMNCKPLVVTFRAY-SKDQIIRILQERLME 322 (517)
Q Consensus 290 ~~l~sr~~~~~~i~f~p~-~~~e~~~IL~~rl~~ 322 (517)
.|+.++ .++.|-.| ....+..|....+.+
T Consensus 1631 eRf~r~----~v~vf~~ype~~SL~~Iyea~l~~ 1660 (3164)
T COG5245 1631 ERFIRK----PVFVFCCYPELASLRNIYEAVLMG 1660 (3164)
T ss_pred HHHhcC----ceEEEecCcchhhHHHHHHHHHHH
Confidence 344433 35555444 445666666655553
No 371
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.77 E-value=0.0014 Score=62.03 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l 173 (517)
..+|.||||||||+++..++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 48999999999999988887776
No 372
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.77 E-value=0.0029 Score=61.56 Aligned_cols=107 Identities=20% Similarity=0.237 Sum_probs=46.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLY 229 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~ 229 (517)
+-++|+|.||+|||++++.+.+.+.+. + ..++.++...+. +... .+.....++.++..+
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~----~---~~v~~i~~~~~~------------~~~~--~y~~~~~Ek~~R~~l 60 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEK----G---KEVVIISDDSLG------------IDRN--DYADSKKEKEARGSL 60 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHT----T-----EEEE-THHHH-------------TTS--SS--GGGHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhc----C---CEEEEEcccccc------------cchh--hhhchhhhHHHHHHH
Confidence 358899999999999999999888761 2 346666632210 0000 010111133333222
Q ss_pred HhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECC
Q 010136 230 SQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANA 281 (517)
Q Consensus 230 ~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~ 281 (517)
...+...-.+..|||+|...++-+-+ -.||.+-+. .+...++|-+..+
T Consensus 61 ~s~v~r~ls~~~iVI~Dd~nYiKg~R-YelyclAr~---~~~~~c~i~~~~~ 108 (270)
T PF08433_consen 61 KSAVERALSKDTIVILDDNNYIKGMR-YELYCLARA---YGTTFCVIYCDCP 108 (270)
T ss_dssp HHHHHHHHTT-SEEEE-S---SHHHH-HHHHHHHHH---TT-EEEEEEEE--
T ss_pred HHHHHHhhccCeEEEEeCCchHHHHH-HHHHHHHHH---cCCCEEEEEECCC
Confidence 22111111223688999998874332 224444433 3455666665654
No 373
>PF07034 ORC3_N: Origin recognition complex (ORC) subunit 3 N-terminus; InterPro: IPR020795 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. ; GO: 0003677 DNA binding, 0006260 DNA replication, 0005664 nuclear origin of replication recognition complex
Probab=96.76 E-value=0.07 Score=53.68 Aligned_cols=218 Identities=17% Similarity=0.230 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHhhccC---------------CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCC
Q 010136 131 DEQKKVLEFCKKNLEEE---------------KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSL 195 (517)
Q Consensus 131 ~e~~~l~~~L~~~l~~~---------------~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~ 195 (517)
+.+++|.+|+....... -+..+++.|+.=+.=..+...+...+.+. . ...++.++....
T Consensus 56 ~~f~~l~~Fi~~~~~~~~~~~~~~~~~~~~~~IPtA~lltGvN~~dh~~~F~~L~~~L~~~----~--~~~vv~L~S~dc 129 (330)
T PF07034_consen 56 KLFDDLVDFIRNSHSSDESSARDWASQMNSREIPTALLLTGVNIPDHDLLFEQLSERLQSS----V--GPYVVRLNSKDC 129 (330)
T ss_pred HHHHHHHHHHHhhcCccccccccccccccccccchHHHHhCCCCccHHHHHHHHHHHHHhC----C--CcEEEEEecccc
Confidence 34556777776654322 23456777888777777888877777642 1 247889999999
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCC------------CCHHHHHHHHHHh------------hh--ccCCCceEEEEEeCcc
Q 010136 196 TNTSEIFSKILLKLQPRKKLNGS------------TSPLQYLQNLYSQ------------KL--HSSVMKMMLIIADELD 249 (517)
Q Consensus 196 ~s~~~i~~~i~~~l~~~~~~~~~------------~~~~~~l~~~~~~------------~~--~~~~~~~~vI~iDEiD 249 (517)
.+...+++.|..++......... ....+.|...+.. .. ......++||+|.+++
T Consensus 130 ~~lk~~lk~iv~ql~~~~~~~~~~~~~~~~~~~~~~yd~~~L~~wy~~~~~~~~~~~~~~~~~~~~~~~~~lVIi~eD~E 209 (330)
T PF07034_consen 130 SNLKSALKSIVRQLMSDKSDVDEDEEEEEKGQRRLNYDMDILAAWYQNNTKKNDSPSKQKNFSSSRDKSPPLVIIFEDFE 209 (330)
T ss_pred hHHHHHHHHHHHHHHhcccccccccchhhcccCcCCCCHHHHHHHHHhhhccccchhhhcccccccccCCCEEEEEcccc
Confidence 89999999999998543322211 1124455555541 00 0122358999999999
Q ss_pred hhcccCchHHHHHhccC---CCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHH-HHHHHHh-hhc
Q 010136 250 YLITRDRAVLHDLFMLT---TFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIR-ILQERLM-ELS 324 (517)
Q Consensus 250 ~L~~~~~~~L~~l~~~~---~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~-IL~~rl~-~~~ 324 (517)
.+.. .+|..|+... ...-.-+.|+|++++.++....+|+-..+.+.. -.|.-.+..++.+ |+...+- .-.
T Consensus 210 sF~~---~VL~dlI~ils~~~~~lP~vli~GiaTs~~~~~~~Lp~~~~~~L~~--~~F~~~~~~~~l~~v~~~~l~~~~~ 284 (330)
T PF07034_consen 210 SFDS---QVLQDLILILSSYLDRLPFVLIFGIATSVEAFHSRLPRSTLSLLRI--KKFQLQSSSEILERVLEKVLLSPDF 284 (330)
T ss_pred cCCH---HHHHHHHHHHHhccCCcCEEEEEecCCChHHHHhhCCHHHHhhcCc--eEEEeCChHHHHHHHHHHHhcCCCC
Confidence 9854 4444443321 112234667788888776666554444332533 3455555555544 4444432 111
Q ss_pred cCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 010136 325 YIVFQPQALELCARKVAAASGDMRKALSVCRSAIE 359 (517)
Q Consensus 325 ~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~ 359 (517)
+-.+.+.+++.+..........+...+..++.|.+
T Consensus 285 ~~~l~~~~~~~L~~~f~~~~~Sv~~fi~~lk~~~m 319 (330)
T PF07034_consen 285 PFKLGPRVLQFLLDRFLDHDFSVDSFISGLKYAYM 319 (330)
T ss_pred CceECHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 23678889999888777777777777777776653
No 374
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.76 E-value=0.0024 Score=59.06 Aligned_cols=45 Identities=29% Similarity=0.301 Sum_probs=33.1
Q ss_pred EEEEEeCcchhcccCchHHHHHhccCCC------------CCCcEEEEEEECCCCcc
Q 010136 241 MLIIADELDYLITRDRAVLHDLFMLTTF------------PFSRFILIGIANAIDLA 285 (517)
Q Consensus 241 ~vI~iDEiD~L~~~~~~~L~~l~~~~~~------------~~~~v~lI~ian~~~~~ 285 (517)
.|+.|||++.+.....+.|..++..... -....++||++|..++.
T Consensus 97 ~iveldEl~~~~k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L 153 (198)
T PF05272_consen 97 WIVELDELDGLSKKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFL 153 (198)
T ss_pred HheeHHHHhhcchhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCccee
Confidence 6899999999987777888887755211 12468899999976643
No 375
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.76 E-value=0.0044 Score=61.57 Aligned_cols=90 Identities=16% Similarity=0.112 Sum_probs=51.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCC---CCCCCCHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKK---LNGSTSPLQYL 225 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~---~~~~~~~~~~l 225 (517)
+..+.|+||||+|||+++..++...... + -.++||++....++. .+..++.... ........+.+
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~----g---~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l 122 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKL----G---GTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQAL 122 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc----C---CCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHH
Confidence 4467899999999999999988765432 2 257899886654432 2333321100 00111222222
Q ss_pred HHHHHhhhccCCCceEEEEEeCcchhcc
Q 010136 226 QNLYSQKLHSSVMKMMLIIADELDYLIT 253 (517)
Q Consensus 226 ~~~~~~~~~~~~~~~~vI~iDEiD~L~~ 253 (517)
+ .+... .......+||||-+-.|..
T Consensus 123 ~-i~~~l--i~s~~~~lIVIDSvaal~~ 147 (325)
T cd00983 123 E-IADSL--VRSGAVDLIVVDSVAALVP 147 (325)
T ss_pred H-HHHHH--HhccCCCEEEEcchHhhcc
Confidence 2 22211 1245678999999988864
No 376
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.76 E-value=0.0095 Score=57.01 Aligned_cols=49 Identities=16% Similarity=0.277 Sum_probs=33.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKI 205 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i 205 (517)
.+..++|+|+||+|||+++..++.+... .| -.++|++... ++.++...+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~----~g---e~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ----MG---EPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH----cC---CcEEEEEeeC--CHHHHHHHH
Confidence 3557999999999999999887655322 12 2478888654 455655543
No 377
>PF13479 AAA_24: AAA domain
Probab=96.75 E-value=0.0036 Score=58.88 Aligned_cols=78 Identities=12% Similarity=0.231 Sum_probs=43.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNL 228 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~ 228 (517)
+-.++|||+||+|||+++..+ . ..+++++..-......+. .... . .....+.+.+.
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~-----------k~l~id~E~g~~~~~~~~------~~~~-i--~i~s~~~~~~~ 58 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----P-----------KPLFIDTENGSDSLKFLD------DGDV-I--PITSWEDFLEA 58 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----C-----------CeEEEEeCCCccchhhhc------CCCe-e--CcCCHHHHHHH
Confidence 457999999999999999886 1 456666654321111100 0000 0 11124445554
Q ss_pred HHhhhccCCCceEEEEEeCcchh
Q 010136 229 YSQKLHSSVMKMMLIIADELDYL 251 (517)
Q Consensus 229 ~~~~~~~~~~~~~vI~iDEiD~L 251 (517)
+... .......-+||||-++.+
T Consensus 59 ~~~l-~~~~~~y~tiVIDsis~~ 80 (213)
T PF13479_consen 59 LDEL-EEDEADYDTIVIDSISWL 80 (213)
T ss_pred HHHH-HhccCCCCEEEEECHHHH
Confidence 4321 112445678999988886
No 378
>PRK07261 topology modulation protein; Provisional
Probab=96.75 E-value=0.004 Score=56.34 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.++|+|+||+||||+++.+++.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999987664
No 379
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.75 E-value=0.0012 Score=56.26 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 010136 152 LYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 152 lli~G~pGtGKT~l~~~v~~~l 173 (517)
|+|.|+||+||||+++.+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999885
No 380
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.75 E-value=0.0065 Score=57.28 Aligned_cols=40 Identities=28% Similarity=0.273 Sum_probs=30.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCC
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSL 195 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~ 195 (517)
+..+.|+|+||+|||+++..++.++... + ..++|++....
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~----g---~~v~yi~~e~~ 58 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQ----G---KKVAYIDTEGL 58 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc----C---CeEEEEECCCC
Confidence 4468899999999999999998876431 2 35788876543
No 381
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.74 E-value=0.0089 Score=58.03 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=27.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCC
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCT 193 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~ 193 (517)
+..++|+|+||||||+++..++..... .|. .++|++..
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~----~Ge---~vlyis~E 73 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQAS----RGN---PVLFVTVE 73 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh----CCC---cEEEEEec
Confidence 456889999999999999998765332 222 46777764
No 382
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.73 E-value=0.039 Score=56.60 Aligned_cols=152 Identities=10% Similarity=0.052 Sum_probs=71.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHH-HHHHHHHHhCCCCCCCCCCCHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSE-IFSKILLKLQPRKKLNGSTSPLQYLQN 227 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~-i~~~i~~~l~~~~~~~~~~~~~~~l~~ 227 (517)
+..++|+||+|+||||++..++..+... .| ..+..+++-....... .+...+..++.... . ...+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~---~G---~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~-----~-~~~~~~ 290 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLH---MG---KSVSLYTTDNYRIAAIEQLKRYADTMGMPFY-----P-VKDIKK 290 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHh---cC---CeEEEecccchhhhHHHHHHHHHHhcCCCee-----e-hHHHHH
Confidence 3468899999999999999998765321 12 2466666655443221 12222223322110 0 111222
Q ss_pred HHHhhhccCCCceEEEEEeCcchhcccC--chHHHHHhccCCC-CCCcEEEEEEECC-CCcchhhcccccccCCCceEEE
Q 010136 228 LYSQKLHSSVMKMMLIIADELDYLITRD--RAVLHDLFMLTTF-PFSRFILIGIANA-IDLADRFLPRLQSMNCKPLVVT 303 (517)
Q Consensus 228 ~~~~~~~~~~~~~~vI~iDEiD~L~~~~--~~~L~~l~~~~~~-~~~~v~lI~ian~-~~~~~~l~~~l~sr~~~~~~i~ 303 (517)
+... .. ....-+|+||=.-...... -+.|..+++.... ....+.++.-++. .+-...+..+. +. ++...+.
T Consensus 291 l~~~-l~--~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f-~~-~~~~glI 365 (432)
T PRK12724 291 FKET-LA--RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY-ES-LNYRRIL 365 (432)
T ss_pred HHHH-HH--hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh-cC-CCCCEEE
Confidence 2221 11 2344679999654432211 1234444433211 1223334332332 11112222333 22 5667889
Q ss_pred eCCCCHHHHHHHHH
Q 010136 304 FRAYSKDQIIRILQ 317 (517)
Q Consensus 304 f~p~~~~e~~~IL~ 317 (517)
|.-+|.....-.+-
T Consensus 366 lTKLDEt~~~G~il 379 (432)
T PRK12724 366 LTKLDEADFLGSFL 379 (432)
T ss_pred EEcccCCCCccHHH
Confidence 98888765544333
No 383
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.73 E-value=0.0088 Score=71.51 Aligned_cols=108 Identities=14% Similarity=0.133 Sum_probs=60.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNL 228 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~ 228 (517)
...++|.|.||||||++++.+...+.......+. .++-+ ++.. .....|. +. |. ....|..+
T Consensus 984 dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~---~V~gl-APTg----rAAk~L~-e~--------Gi-~A~TI~s~ 1045 (1747)
T PRK13709 984 DRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERP---RVVGL-GPTH----RAVGEMR-SA--------GV-DAQTLASF 1045 (1747)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCc---eEEEE-CCcH----HHHHHHH-hc--------Cc-chhhHHHH
Confidence 4689999999999999999998887543222221 22222 2221 1112221 11 11 13334444
Q ss_pred HHhhh------ccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEE
Q 010136 229 YSQKL------HSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIG 277 (517)
Q Consensus 229 ~~~~~------~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ 277 (517)
+.... ........||||||+-.+.. ..++.|++.....+.++++||
T Consensus 1046 L~~~~~~~~~~~~~~~~~~llIVDEaSMv~~---~~m~~Ll~~~~~~garvVLVG 1097 (1747)
T PRK13709 1046 LHDTQLQQRSGETPDFSNTLFLLDESSMVGN---TDMARAYALIAAGGGRAVSSG 1097 (1747)
T ss_pred hcccccccccccCCCCCCcEEEEEccccccH---HHHHHHHHhhhcCCCEEEEec
Confidence 43100 00112347999999988843 456666666544567888887
No 384
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.71 E-value=0.001 Score=58.07 Aligned_cols=22 Identities=36% Similarity=0.769 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 010136 152 LYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 152 lli~G~pGtGKT~l~~~v~~~l 173 (517)
++++|+||+||||+++.+++.+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
Confidence 7899999999999999998764
No 385
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.71 E-value=0.018 Score=56.31 Aligned_cols=75 Identities=17% Similarity=0.155 Sum_probs=45.6
Q ss_pred HHhhcCcCCCCCCCCCcHHHHHHHHHHHHHhhcc-CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEe
Q 010136 113 VREALHVSTAPSTIVCREDEQKKVLEFCKKNLEE-EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSIN 191 (517)
Q Consensus 113 ~~~~l~~~~~p~~l~gRe~e~~~l~~~L~~~l~~-~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn 191 (517)
.++.|..+-+|..+.+.++. +.+ ..+..++|.|+||+|||+++..++..+... .+ ..++|++
T Consensus 4 ~~~~~~~~~~~tg~~~Ld~~-----------~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~---~g---~~vl~iS 66 (271)
T cd01122 4 IREALSNEEVWWPFPVLNKL-----------TKGLRKGELIILTAGTGVGKTTFLREYALDLITQ---HG---VRVGTIS 66 (271)
T ss_pred hhccccccCCCCCcceeeee-----------eEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh---cC---ceEEEEE
Confidence 44555555566555554441 112 235578899999999999999988765432 12 3577887
Q ss_pred CCCCCCHHHHHHHHH
Q 010136 192 CTSLTNTSEIFSKIL 206 (517)
Q Consensus 192 ~~~~~s~~~i~~~i~ 206 (517)
... +...+...+.
T Consensus 67 ~E~--~~~~~~~r~~ 79 (271)
T cd01122 67 LEE--PVVRTARRLL 79 (271)
T ss_pred ccc--CHHHHHHHHH
Confidence 654 3344444443
No 386
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.71 E-value=0.0016 Score=58.65 Aligned_cols=25 Identities=32% Similarity=0.602 Sum_probs=22.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
+++|+|+||+||||+++.+++.+..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhc
Confidence 5899999999999999999999864
No 387
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.67 E-value=0.0048 Score=61.52 Aligned_cols=37 Identities=16% Similarity=0.370 Sum_probs=30.0
Q ss_pred HHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 136 VLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 136 l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
+..+|..++. ...+++|+|++|+||||++++++..+.
T Consensus 133 ~~~~l~~~v~--~~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 133 IKEFLRLAIA--SRKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred HHHHHHHHhh--CCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 4556666665 457999999999999999999987764
No 388
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.66 E-value=0.0036 Score=58.55 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=34.1
Q ss_pred CCceEEEEEeCcchhccc-CchHHHHHhccCCCCCCcEEEEEEECCCCcchhhcccc
Q 010136 237 VMKMMLIIADELDYLITR-DRAVLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRL 292 (517)
Q Consensus 237 ~~~~~vI~iDEiD~L~~~-~~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l 292 (517)
...|.+|++||.=....- .|..+.+++.... ...++.+|.|+.++.+.+.+-.|+
T Consensus 157 ~~~PklLIlDEptSaLD~siQa~IlnlL~~l~-~~~~lt~l~IsHdl~~v~~~cdRi 212 (252)
T COG1124 157 IPEPKLLILDEPTSALDVSVQAQILNLLLELK-KERGLTYLFISHDLALVEHMCDRI 212 (252)
T ss_pred ccCCCEEEecCchhhhcHHHHHHHHHHHHHHH-HhcCceEEEEeCcHHHHHHHhhhe
Confidence 346789999998665443 3444444443321 235678888899877666655443
No 389
>PRK14709 hypothetical protein; Provisional
Probab=96.64 E-value=0.28 Score=51.70 Aligned_cols=48 Identities=21% Similarity=0.356 Sum_probs=34.7
Q ss_pred CcHHHHHHHHHHHHHhhccCCC--CeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 128 CREDEQKKVLEFCKKNLEEEKA--GSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 128 gRe~e~~~l~~~L~~~l~~~~~--~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
|-++.+.-|.+++.-++.+... ..++++|+-|.|||++++.+..-++.
T Consensus 182 gD~e~~~~lq~~lGy~L~g~~~~q~~~~l~G~G~NGKSt~~~~i~~llG~ 231 (469)
T PRK14709 182 GDDELIRFLQQWCGYCLTGDTREHALVFVFGGGGNGKSVFLNVLAGILGD 231 (469)
T ss_pred CCHHHHHHHHHHhhHhhcCCCccceEEEEECCCCCcHHHHHHHHHHHHhh
Confidence 3344555566667666665432 34778999999999999998888775
No 390
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.63 E-value=0.0019 Score=58.31 Aligned_cols=27 Identities=26% Similarity=0.258 Sum_probs=24.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.+..++|+|+||+|||++++.+++.++
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999998874
No 391
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.62 E-value=0.00094 Score=62.78 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~ 172 (517)
++.++|+||.|+|||++++.++..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 367999999999999999999843
No 392
>PRK13808 adenylate kinase; Provisional
Probab=96.60 E-value=0.0064 Score=60.55 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.|+|+||||+|||++++.+++.+
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~y 24 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQY 24 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998765
No 393
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.58 E-value=0.024 Score=57.34 Aligned_cols=150 Identities=11% Similarity=0.102 Sum_probs=80.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQN 227 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~ 227 (517)
..+.+.|.||.|+||||++-.++..+.-. .+-.++.++..++.......++ ..-++-++.+... -.+ .+.|..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~---~~~~kVaiITtDtYRIGA~EQL-k~Ya~im~vp~~v--v~~-~~el~~ 274 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVML---KKKKKVAIITTDTYRIGAVEQL-KTYADIMGVPLEV--VYS-PKELAE 274 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhh---ccCcceEEEEeccchhhHHHHH-HHHHHHhCCceEE--ecC-HHHHHH
Confidence 47789999999999999998888776621 1223356777777766554442 2223333322211 112 333444
Q ss_pred HHHhhhccCCCceEEEEEeCcchhcccC--chHHHHHhccCCCCCCcEEEEEEECC--CCcchhhcccccccCCCceEEE
Q 010136 228 LYSQKLHSSVMKMMLIIADELDYLITRD--RAVLHDLFMLTTFPFSRFILIGIANA--IDLADRFLPRLQSMNCKPLVVT 303 (517)
Q Consensus 228 ~~~~~~~~~~~~~~vI~iDEiD~L~~~~--~~~L~~l~~~~~~~~~~v~lI~ian~--~~~~~~l~~~l~sr~~~~~~i~ 303 (517)
.+.. -...-+|++|=+-+=..+. -..|..+++... ...+.++..+|+ .|+. .+.++... +...-+.
T Consensus 275 ai~~-----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~--~i~~~Lvlsat~K~~dlk-ei~~~f~~--~~i~~~I 344 (407)
T COG1419 275 AIEA-----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSH--SIEVYLVLSATTKYEDLK-EIIKQFSL--FPIDGLI 344 (407)
T ss_pred HHHH-----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccc--cceEEEEEecCcchHHHH-HHHHHhcc--CCcceeE
Confidence 4431 1122688899765432221 134666666552 233333333332 2322 23344433 5557788
Q ss_pred eCCCCHHHHHH
Q 010136 304 FRAYSKDQIIR 314 (517)
Q Consensus 304 f~p~~~~e~~~ 314 (517)
|.-+|.....-
T Consensus 345 ~TKlDET~s~G 355 (407)
T COG1419 345 FTKLDETTSLG 355 (407)
T ss_pred EEcccccCchh
Confidence 88887755443
No 394
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.56 E-value=0.0025 Score=48.19 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 010136 152 LYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 152 lli~G~pGtGKT~l~~~v~~~l 173 (517)
+.|.|+||+|||++++.+.+.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999998887
No 395
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.55 E-value=0.007 Score=55.43 Aligned_cols=25 Identities=28% Similarity=0.585 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+.++|.|+||+||||+++.+++.+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999998765
No 396
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.53 E-value=0.0035 Score=60.35 Aligned_cols=53 Identities=26% Similarity=0.410 Sum_probs=36.8
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHH
Q 010136 121 TAPSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDW 176 (517)
Q Consensus 121 ~~p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~ 176 (517)
.+|..++..++-- +...+.. +.....+-+|++||.|+||||++-++.+.++..
T Consensus 100 ~Ip~~i~~~e~Lg--lP~i~~~-~~~~~~GLILVTGpTGSGKSTTlAamId~iN~~ 152 (353)
T COG2805 100 LIPSKIPTLEELG--LPPIVRE-LAESPRGLILVTGPTGSGKSTTLAAMIDYINKH 152 (353)
T ss_pred ccCccCCCHHHcC--CCHHHHH-HHhCCCceEEEeCCCCCcHHHHHHHHHHHHhcc
Confidence 3555555544422 3344444 333567889999999999999999999998764
No 397
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.53 E-value=0.022 Score=50.50 Aligned_cols=121 Identities=14% Similarity=0.108 Sum_probs=59.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEE---EeCCCCCCHHHHHHHHHHHhC----CCCCCCCCCCHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFS---INCTSLTNTSEIFSKILLKLQ----PRKKLNGSTSPL 222 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~---vn~~~~~s~~~i~~~i~~~l~----~~~~~~~~~~~~ 222 (517)
+-+.||+.+|.|||++|-.++-.... .|. ++.. +-+........++..+- .+. +...........
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~----~g~---~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~ 74 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALG----HGY---RVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDE 74 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH----CCC---eEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChH
Confidence 56889999999999999888755432 233 3444 33332334444444431 110 000000001111
Q ss_pred H---HHHHHHHh-hhccCCCceEEEEEeCcchhcccC---chHHHHHhccCCCCCCcEEEEEEECC
Q 010136 223 Q---YLQNLYSQ-KLHSSVMKMMLIIADELDYLITRD---RAVLHDLFMLTTFPFSRFILIGIANA 281 (517)
Q Consensus 223 ~---~l~~~~~~-~~~~~~~~~~vI~iDEiD~L~~~~---~~~L~~l~~~~~~~~~~v~lI~ian~ 281 (517)
+ ..++.+.. .........-+|||||+-...... .+.+.++++.. ...+-||.+.+.
T Consensus 75 ~~~~~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~r---p~~~evIlTGr~ 137 (159)
T cd00561 75 EDIAAAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAK---PEDLELVLTGRN 137 (159)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcC---CCCCEEEEECCC
Confidence 1 11112211 001124566799999998886543 34455555432 234445554554
No 398
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.52 E-value=0.01 Score=57.71 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
..+.++|+|++|+||||++++++..+.
T Consensus 79 ~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 79 PHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 456899999999999999999988764
No 399
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.51 E-value=0.004 Score=63.06 Aligned_cols=27 Identities=30% Similarity=0.548 Sum_probs=24.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
..+.++|+||+|+||||++++++..+.
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 468899999999999999999988764
No 400
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.51 E-value=0.02 Score=54.43 Aligned_cols=40 Identities=23% Similarity=0.249 Sum_probs=29.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCC
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTS 194 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~ 194 (517)
.+..++|.|+||+|||+++..++..... .+ -.++|++...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~----~g---~~~~~is~e~ 58 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLR----DG---DPVIYVTTEE 58 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHh----cC---CeEEEEEccC
Confidence 3567899999999999999988764332 12 2578887643
No 401
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=96.50 E-value=0.037 Score=61.72 Aligned_cols=155 Identities=12% Similarity=0.167 Sum_probs=77.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCC---------
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGST--------- 219 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~--------- 219 (517)
...++|.|++|+||||-+-.++-+.+- +. -..+.+.-+.-.....+-..++++++.......|.
T Consensus 65 ~~vvii~getGsGKTTqlP~~lle~g~-----~~--~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~~~s 137 (845)
T COG1643 65 NQVVIIVGETGSGKTTQLPQFLLEEGL-----GI--AGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESKVS 137 (845)
T ss_pred CCEEEEeCCCCCChHHHHHHHHHhhhc-----cc--CCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEeeccCC
Confidence 578999999999999999888755431 00 01222222222233456677778876543211110
Q ss_pred --------CHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhcc--CCCC-CCcEEEEEEECCCC---cc
Q 010136 220 --------SPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFML--TTFP-FSRFILIGIANAID---LA 285 (517)
Q Consensus 220 --------~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~--~~~~-~~~v~lI~ian~~~---~~ 285 (517)
...-.++.+..+.. -.+..+|+|||+|.=.-.. +.+..++.. .... .-++++. +-++| |.
T Consensus 138 ~~Trik~mTdGiLlrei~~D~~---Ls~ys~vIiDEaHERSl~t-DilLgllk~~~~~rr~DLKiIim--SATld~~rfs 211 (845)
T COG1643 138 PRTRIKVMTDGILLREIQNDPL---LSGYSVVIIDEAHERSLNT-DILLGLLKDLLARRRDDLKLIIM--SATLDAERFS 211 (845)
T ss_pred CCceeEEeccHHHHHHHhhCcc---cccCCEEEEcchhhhhHHH-HHHHHHHHHHHhhcCCCceEEEE--ecccCHHHHH
Confidence 11234444443222 3456799999998643322 333333222 1122 2455554 44443 33
Q ss_pred hhhc--c--cccccCCCceEEEe-CCCCHHH-HHHHHH
Q 010136 286 DRFL--P--RLQSMNCKPLVVTF-RAYSKDQ-IIRILQ 317 (517)
Q Consensus 286 ~~l~--~--~l~sr~~~~~~i~f-~p~~~~e-~~~IL~ 317 (517)
..+. | .+-.| -.+..|.| ++...++ +.+-+.
T Consensus 212 ~~f~~apvi~i~GR-~fPVei~Y~~~~~~d~~l~~ai~ 248 (845)
T COG1643 212 AYFGNAPVIEIEGR-TYPVEIRYLPEAEADYILLDAIV 248 (845)
T ss_pred HHcCCCCEEEecCC-ccceEEEecCCCCcchhHHHHHH
Confidence 3332 1 22234 45678888 4444444 433333
No 402
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.49 E-value=0.023 Score=54.45 Aligned_cols=50 Identities=12% Similarity=0.272 Sum_probs=34.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKIL 206 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~ 206 (517)
+..++|.|+||+|||+++..++..+... .+ ..++|+++.. ++..+...+.
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~---~g---~~vly~s~E~--~~~~~~~r~~ 62 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKK---QG---KPVLFFSLEM--SKEQLLQRLL 62 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHh---CC---CceEEEeCCC--CHHHHHHHHH
Confidence 4478899999999999999987665432 12 3578888655 3445544443
No 403
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.49 E-value=0.0021 Score=58.76 Aligned_cols=22 Identities=32% Similarity=0.653 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 010136 152 LYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 152 lli~G~pGtGKT~l~~~v~~~l 173 (517)
++|+|+||+||||+++.+++.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998875
No 404
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=96.49 E-value=0.055 Score=47.80 Aligned_cols=134 Identities=12% Similarity=0.151 Sum_probs=74.1
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCC--HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 010136 153 YVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTN--TSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYS 230 (517)
Q Consensus 153 li~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s--~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~ 230 (517)
+=.+.+||||||++.++.+.+++| -+|..-.... +..+...+.+. +.
T Consensus 3 vPIAtiGCGKTTva~aL~~LFg~w-----------gHvQnDnI~~k~~~~f~~~~l~~--------------------L~ 51 (168)
T PF08303_consen 3 VPIATIGCGKTTVALALSNLFGEW-----------GHVQNDNITGKRKPKFIKAVLEL--------------------LA 51 (168)
T ss_pred eeecCCCcCHHHHHHHHHHHcCCC-----------CccccCCCCCCCHHHHHHHHHHH--------------------Hh
Confidence 346899999999999988776432 2233333322 33332222222 21
Q ss_pred hhhccCCCceEEEEEeCcchhcccCchHHHHHhccCC--C-CCCcEEEEEEECCCC-cch---h-hcccccccCCCceEE
Q 010136 231 QKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTT--F-PFSRFILIGIANAID-LAD---R-FLPRLQSMNCKPLVV 302 (517)
Q Consensus 231 ~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~--~-~~~~v~lI~ian~~~-~~~---~-l~~~l~sr~~~~~~i 302 (517)
.....++|+|==.++...+++.+..+-.... . ....+-+|++.=..+ ..+ + ...|+..|+-..+.|
T Consensus 52 ------~~~~~vViaDRNNh~~reR~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTi 125 (168)
T PF08303_consen 52 ------KDTHPVVIADRNNHQKRERKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTI 125 (168)
T ss_pred ------hCCCCEEEEeCCCchHHHHHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCccee
Confidence 2334688999777765544444333322211 1 123444555432211 111 1 246777775455788
Q ss_pred EeCCCCHHHHHHHHHHHHhhh
Q 010136 303 TFRAYSKDQIIRILQERLMEL 323 (517)
Q Consensus 303 ~f~p~~~~e~~~IL~~rl~~~ 323 (517)
....++......|+..-+..+
T Consensus 126 ka~~~~~~~~~~Im~gFi~rf 146 (168)
T PF08303_consen 126 KADSKDEKKVEGIMEGFIKRF 146 (168)
T ss_pred ecCCCCHHHHHHHHHHHHHhc
Confidence 888888888888888777654
No 405
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.46 E-value=0.018 Score=54.51 Aligned_cols=101 Identities=12% Similarity=0.065 Sum_probs=54.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCC-------CCCCCCH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKK-------LNGSTSP 221 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~-------~~~~~~~ 221 (517)
+..+.|+|+||+|||+++..++....... ..+-....++|+++.....+.. +..+...+..... ......
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~-~~~g~~~~v~yi~~e~~~~~~r-l~~~~~~~~~~~~~~~~~i~~~~~~~- 95 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPG-ELGGLEGKVVYIDTEGAFRPER-LVQLAVRFGLDPEEVLDNIYVARPYN- 95 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhccc-ccCCCcceEEEEecCCCCCHHH-HHHHHHHhccchhhhhccEEEEeCCC-
Confidence 45788999999999999999877653211 0001113688999876444433 3344444321100 000111
Q ss_pred HHHHHHHHHhhh-ccCCCceEEEEEeCcchhc
Q 010136 222 LQYLQNLYSQKL-HSSVMKMMLIIADELDYLI 252 (517)
Q Consensus 222 ~~~l~~~~~~~~-~~~~~~~~vI~iDEiD~L~ 252 (517)
.+.+...+.... ........+||||-+..+.
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~ 127 (226)
T cd01393 96 GEQQLEIVEELERIMSSGRVDLVVVDSVAALF 127 (226)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEcCcchhh
Confidence 222333333210 0124467799999998774
No 406
>PRK03839 putative kinase; Provisional
Probab=96.45 E-value=0.0026 Score=58.02 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.++|.|+||+||||+++.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999988863
No 407
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.45 E-value=0.002 Score=57.07 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+.|+|.|||||||+++.+. .+
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~l 23 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-EL 23 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-Hh
Confidence 57899999999999999987 54
No 408
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.45 E-value=0.026 Score=55.14 Aligned_cols=43 Identities=21% Similarity=0.354 Sum_probs=31.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCC
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTN 197 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s 197 (517)
.+..+.|+|++|+||||++..++..+... + ..+..+++-.+..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~----g---~~V~li~~D~~r~ 113 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQ----G---KSVLLAAGDTFRA 113 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc----C---CEEEEEeCCCCCH
Confidence 35678899999999999999999877532 2 2566677665543
No 409
>PRK00625 shikimate kinase; Provisional
Probab=96.44 E-value=0.0027 Score=57.47 Aligned_cols=24 Identities=25% Similarity=0.653 Sum_probs=22.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
+++|+|.||+|||++++.+++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988864
No 410
>PRK06547 hypothetical protein; Provisional
Probab=96.44 E-value=0.0045 Score=56.03 Aligned_cols=30 Identities=17% Similarity=0.145 Sum_probs=25.1
Q ss_pred hccCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 144 LEEEKAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 144 l~~~~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
+....+..+.|.|++|+|||++++.+++.+
T Consensus 10 ~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 10 LCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred hhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 334567788899999999999999998774
No 411
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.41 E-value=0.11 Score=51.98 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=29.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCC
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSL 195 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~ 195 (517)
+..+.|.||+|+||||++..++..+... + ..+..+.+...
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~----g---~~V~Li~~D~~ 153 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQ----G---KKVLLAAGDTF 153 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhc----C---CeEEEEecCcc
Confidence 5578899999999999999999887532 2 24555665443
No 412
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=96.40 E-value=0.018 Score=51.59 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=18.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQ 170 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~ 170 (517)
+.++++.||+|+|||+.+...+
T Consensus 14 ~~~~li~aptGsGKT~~~~~~~ 35 (169)
T PF00270_consen 14 GKNVLISAPTGSGKTLAYILPA 35 (169)
T ss_dssp TSEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEECCCCCccHHHHHHHH
Confidence 4679999999999999988544
No 413
>PRK04328 hypothetical protein; Provisional
Probab=96.38 E-value=0.029 Score=54.09 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=31.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIF 202 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~ 202 (517)
.+..++|+|+||+|||+++..++.+-.. .|. ..+|++... ++..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~----~ge---~~lyis~ee--~~~~i~ 67 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ----MGE---PGVYVALEE--HPVQVR 67 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh----cCC---cEEEEEeeC--CHHHHH
Confidence 3567899999999999999887655322 122 467887655 445543
No 414
>PRK09354 recA recombinase A; Provisional
Probab=96.38 E-value=0.009 Score=59.89 Aligned_cols=90 Identities=14% Similarity=0.081 Sum_probs=52.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCC---CCCCCCHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKK---LNGSTSPLQYL 225 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~---~~~~~~~~~~l 225 (517)
+..+.|+||||||||+++..++.+.... | -.++||++....++. .+..++.... ........+.+
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~----G---~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l 127 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA----G---GTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQAL 127 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc----C---CcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHH
Confidence 4467899999999999999987665432 2 257899987755542 2333322110 00111222222
Q ss_pred HHHHHhhhccCCCceEEEEEeCcchhcc
Q 010136 226 QNLYSQKLHSSVMKMMLIIADELDYLIT 253 (517)
Q Consensus 226 ~~~~~~~~~~~~~~~~vI~iDEiD~L~~ 253 (517)
. .+... .......+||||-+-.|..
T Consensus 128 ~-i~~~l--i~s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 128 E-IADTL--VRSGAVDLIVVDSVAALVP 152 (349)
T ss_pred H-HHHHH--hhcCCCCEEEEeChhhhcc
Confidence 2 22211 1245678999999998864
No 415
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.36 E-value=0.021 Score=70.07 Aligned_cols=109 Identities=19% Similarity=0.198 Sum_probs=61.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQN 227 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~ 227 (517)
....++|.|.+|||||++++.+.+.+.......+. .++-+ ++. ......|. .. |.. ...+..
T Consensus 1035 ~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~---~v~gl-ApT----~~Aa~~L~-~~--------g~~-a~Ti~s 1096 (1960)
T TIGR02760 1035 KDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQL---QVIGL-APT----HEAVGELK-SA--------GVQ-AQTLDS 1096 (1960)
T ss_pred CCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCC---eEEEE-eCh----HHHHHHHH-hc--------CCc-hHhHHH
Confidence 34678899999999999997766655443333332 33333 222 11112221 11 111 334444
Q ss_pred HHHhh----hccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEE
Q 010136 228 LYSQK----LHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIG 277 (517)
Q Consensus 228 ~~~~~----~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ 277 (517)
++... .........||||||+-.+.. ..+..|++.....+.++++||
T Consensus 1097 ~l~~~~~~~~~~~~~~~~v~ivDEasMv~~---~~~~~l~~~~~~~~ak~vlvG 1147 (1960)
T TIGR02760 1097 FLTDISLYRNSGGDFRNTLFILDESSMVSN---FQLTHATELVQKSGSRAVSLG 1147 (1960)
T ss_pred HhcCcccccccCCCCcccEEEEEccccccH---HHHHHHHHhccCCCCEEEEeC
Confidence 44210 011133457999999988743 556666665545668888887
No 416
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.35 E-value=0.021 Score=51.51 Aligned_cols=86 Identities=20% Similarity=0.185 Sum_probs=47.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHh
Q 010136 152 LYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQ 231 (517)
Q Consensus 152 lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~ 231 (517)
++|+|++|+|||+++..++... + -+++|+....-.+ .++-..|..........+........|.+.+.+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~-------~---~~~~y~at~~~~d-~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~ 70 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL-------G---GPVTYIATAEAFD-DEMAERIARHRKRRPAHWRTIETPRDLVSALKE 70 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc-------C---CCeEEEEccCcCC-HHHHHHHHHHHHhCCCCceEeecHHHHHHHHHh
Confidence 6899999999999999987551 1 1467776554332 233333333221111112222223445555541
Q ss_pred hhccCCCceEEEEEeCcchhcc
Q 010136 232 KLHSSVMKMMLIIADELDYLIT 253 (517)
Q Consensus 232 ~~~~~~~~~~vI~iDEiD~L~~ 253 (517)
...+.+|+||-+..+..
T Consensus 71 -----~~~~~~VLIDclt~~~~ 87 (169)
T cd00544 71 -----LDPGDVVLIDCLTLWVT 87 (169)
T ss_pred -----cCCCCEEEEEcHhHHHH
Confidence 11345899998776643
No 417
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.33 E-value=0.0037 Score=56.80 Aligned_cols=26 Identities=23% Similarity=0.265 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
+..++|+|+||+||||+++.+++.+.
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 45789999999999999999987753
No 418
>PRK10646 ADP-binding protein; Provisional
Probab=96.32 E-value=0.011 Score=52.06 Aligned_cols=45 Identities=20% Similarity=0.151 Sum_probs=37.4
Q ss_pred CcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 128 CREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 128 gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.-+++..++...|...+. .+..+++.|.=|+|||++++.+++.++
T Consensus 9 ~s~~~t~~l~~~la~~l~--~g~vi~L~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 9 PDEQATLDLGARVAKACD--GATVIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred CCHHHHHHHHHHHHHhCC--CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 345677788888887775 345789999999999999999999986
No 419
>PRK14531 adenylate kinase; Provisional
Probab=96.30 E-value=0.0033 Score=57.64 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
..++|+|+||+||||+++.+++.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998875
No 420
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.29 E-value=0.033 Score=68.36 Aligned_cols=113 Identities=18% Similarity=0.160 Sum_probs=59.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCC-------CCCC
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLN-------GSTS 220 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~-------~~~~ 220 (517)
.....+|.|+||||||++++.+...+... |. .++ +-++.... -..|.+..+...... ....
T Consensus 445 ~~~v~ii~G~aGTGKTt~l~~l~~~~~~~----G~---~V~-~lAPTgrA----A~~L~e~~g~~A~Ti~~~l~~l~~~~ 512 (1960)
T TIGR02760 445 TKRFIIINGFGGTGSTEIAQLLLHLASEQ----GY---EIQ-IITAGSLS----AQELRQKIPRLASTFITWVKNLFNDD 512 (1960)
T ss_pred CCCeEEEEECCCCCHHHHHHHHHHHHHhc----CC---eEE-EEeCCHHH----HHHHHHHhcchhhhHHHHHHhhcccc
Confidence 45789999999999999999998776542 32 233 33333211 122222221110000 0000
Q ss_pred HHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEE
Q 010136 221 PLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIG 277 (517)
Q Consensus 221 ~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ 277 (517)
....+..++.. .......-||||||+-.+. ...+..|++.....+.+|++||
T Consensus 513 ~~~tv~~fl~~--~~~l~~~~vlIVDEAsMl~---~~~~~~Ll~~a~~~garvVlvG 564 (1960)
T TIGR02760 513 QDHTVQGLLDK--SSPFSNKDIFVVDEANKLS---NNELLKLIDKAEQHNSKLILLN 564 (1960)
T ss_pred cchhHHHhhcc--cCCCCCCCEEEEECCCCCC---HHHHHHHHHHHhhcCCEEEEEc
Confidence 00111111110 0011244699999999884 4567777776555667888877
No 421
>PRK07078 hypothetical protein; Validated
Probab=96.29 E-value=0.89 Score=50.76 Aligned_cols=56 Identities=14% Similarity=0.126 Sum_probs=40.6
Q ss_pred CCccHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhcCceeec-cCC-c-eeEEEeecCH
Q 010136 441 KDMTVGELNKSYMNICKTSLIPPVGTLEFFSMCRVLHDQGVLKVG-RDD-K-LKRVTLKADE 499 (517)
Q Consensus 441 ~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~L~~~glI~~~-~~~-~-~~~~~l~~~~ 499 (517)
..++..+||+.|+..|+..+..+.+...|.. .|...|+-... ..| + ++=|.|...+
T Consensus 691 ~~~~~~~LY~~Y~~wc~~~G~~~~s~k~F~~---~L~~~Gf~~~r~~~g~~~~~Gi~L~~~~ 749 (759)
T PRK07078 691 AKELTAELFNDWKEWAERAGEFVGSQKRFSD---LLATRGFEKWRLTGGLRGFRGIGLKPKP 749 (759)
T ss_pred CceeHHHHHHHHHHHHHHcCCCCCCHHHHHH---HHHhcCCceeeccCCcEEEeceEEeccc
Confidence 4568999999999999999999999998887 55566876543 222 2 3345665444
No 422
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.28 E-value=0.0043 Score=60.66 Aligned_cols=50 Identities=14% Similarity=0.297 Sum_probs=38.4
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
+.+.-.....+.+.++|...+. ..++++|+|++|+||||++++++..+..
T Consensus 104 e~l~~~~~~~~~~~~~l~~~v~--~~~~ili~G~tGSGKTT~l~all~~i~~ 153 (270)
T PF00437_consen 104 EDLGESGSIPEEIAEFLRSAVR--GRGNILISGPTGSGKTTLLNALLEEIPP 153 (270)
T ss_dssp CCCCHTHHCHHHHHHHHHHCHH--TTEEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred hhccCchhhHHHHHHHHhhccc--cceEEEEECCCccccchHHHHHhhhccc
Confidence 3455555555667777777654 5689999999999999999999888764
No 423
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.28 E-value=0.0082 Score=57.13 Aligned_cols=47 Identities=26% Similarity=0.317 Sum_probs=33.4
Q ss_pred cHHHHHHHHHHHHH----hhcc-CCCCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 129 REDEQKKVLEFCKK----NLEE-EKAGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 129 Re~e~~~l~~~L~~----~l~~-~~~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
|+++.+.+...|.. +... ..+..+.|.|++|+||||+++.++..+..
T Consensus 8 ~~~~~~~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 8 RDEEIEAVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred ChHhHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 55555555555444 3333 33456789999999999999999988875
No 424
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.27 E-value=0.0036 Score=55.28 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
+++|+|+||+|||++++.+++.++
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999988763
No 425
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.26 E-value=0.0051 Score=61.74 Aligned_cols=38 Identities=18% Similarity=0.272 Sum_probs=31.5
Q ss_pred HHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 135 KVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 135 ~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.+..+|..++. ...+++|+|++|+||||++++++..+.
T Consensus 148 ~~~~~L~~~v~--~~~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 148 KIKEFLEHAVI--SKKNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred HHHHHHHHHHH--cCCcEEEECCCCCCHHHHHHHHHhhCC
Confidence 35667776665 568999999999999999999988775
No 426
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.25 E-value=0.0068 Score=60.39 Aligned_cols=37 Identities=16% Similarity=0.273 Sum_probs=29.5
Q ss_pred HHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 136 VLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 136 l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
...+|..++. ...+++|+|++|+||||++++++..+.
T Consensus 133 ~~~~L~~~v~--~~~nilI~G~tGSGKTTll~aL~~~i~ 169 (323)
T PRK13833 133 QASVIRSAID--SRLNIVISGGTGSGKTTLANAVIAEIV 169 (323)
T ss_pred HHHHHHHHHH--cCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 3455666665 346899999999999999999988764
No 427
>PRK13947 shikimate kinase; Provisional
Probab=96.23 E-value=0.0034 Score=56.67 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=22.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.+++|.|+||+|||++++.+++.++
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 3699999999999999999998874
No 428
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.23 E-value=0.14 Score=51.86 Aligned_cols=93 Identities=19% Similarity=0.120 Sum_probs=52.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCH-HHHHHHHHHHhCCCCCCCCCCCHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNT-SEIFSKILLKLQPRKKLNGSTSPLQYLQ 226 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~-~~i~~~i~~~l~~~~~~~~~~~~~~~l~ 226 (517)
.+..++|+||.|+||||++..++..+... + ..+..+++-..... ..-+....+.++.... .... ...+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~----g---~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~d-p~dL~ 274 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ----N---RTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATS-PAELE 274 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc----C---CeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCC-HHHHH
Confidence 35678999999999999999998776432 2 25667777665442 1223333333332211 1122 33444
Q ss_pred HHHHhhhccCCCceEEEEEeCcchhc
Q 010136 227 NLYSQKLHSSVMKMMLIIADELDYLI 252 (517)
Q Consensus 227 ~~~~~~~~~~~~~~~vI~iDEiD~L~ 252 (517)
..+... ......-+||||=+-...
T Consensus 275 ~al~~l--~~~~~~D~VLIDTAGr~~ 298 (407)
T PRK12726 275 EAVQYM--TYVNCVDHILIDTVGRNY 298 (407)
T ss_pred HHHHHH--HhcCCCCEEEEECCCCCc
Confidence 444321 111234688999876654
No 429
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.23 E-value=0.0052 Score=54.28 Aligned_cols=38 Identities=18% Similarity=0.373 Sum_probs=29.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCC
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCT 193 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~ 193 (517)
+..++|+|.||+||||+++++.+.|... + ..++++++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~----g---~~~~~LDgD 39 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFAR----G---IKVYLLDGD 39 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHT----T---S-EEEEEHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHc----C---CcEEEecCc
Confidence 4568999999999999999999998763 2 357777753
No 430
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.23 E-value=0.0067 Score=55.74 Aligned_cols=37 Identities=14% Similarity=0.314 Sum_probs=29.5
Q ss_pred HHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 136 VLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 136 l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
+..+|..++. .+.+++|.|++|+||||++++++..+.
T Consensus 14 ~~~~l~~~v~--~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 14 QAAYLWLAVE--ARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred HHHHHHHHHh--CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4555665555 467899999999999999999987664
No 431
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=96.21 E-value=0.0081 Score=64.77 Aligned_cols=63 Identities=13% Similarity=0.157 Sum_probs=50.4
Q ss_pred HHHHhhcCcCCCCCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 111 SAVREALHVSTAPSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 111 ~~~~~~l~~~~~p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
...++.|.....|...+-|.+..+.|.++...-. ..+..++|+|.||+||||+++.++..+..
T Consensus 356 t~ir~~l~~G~~pP~~f~rpeV~~iL~~~~~~r~--~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 356 TELRRRLREGLEIPEWFSFPEVVAELRRTYPPRH--KQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred HHHHHHHHCCCCCChhhcHHHHHHHHHHHhcccc--CCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 4566788889999999999988776666654432 24558999999999999999999998864
No 432
>PRK06762 hypothetical protein; Provisional
Probab=96.20 E-value=0.0044 Score=55.70 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
..++|+|+||+||||+++.+++.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998876
No 433
>PRK04040 adenylate kinase; Provisional
Probab=96.20 E-value=0.0042 Score=57.15 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=22.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
..++|+|+||+||||+++.+++.+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 4689999999999999999988874
No 434
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.20 E-value=0.0074 Score=59.77 Aligned_cols=38 Identities=13% Similarity=0.228 Sum_probs=30.2
Q ss_pred HHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 136 VLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 136 l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
...+|..++. ...+++|+|++|+||||++++++..+..
T Consensus 121 ~~~~L~~~v~--~~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 121 QRDVLREAVL--ARKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred HHHHHHHHHH--cCCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 3455666665 4578999999999999999999987753
No 435
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.038 Score=59.97 Aligned_cols=141 Identities=21% Similarity=0.175 Sum_probs=92.0
Q ss_pred eEEEEEeCcchhcccC-chHHHHHhcc-----CC------------CCCCcEEEEEEECCCCcchhhccccccc--CCCc
Q 010136 240 MMLIIADELDYLITRD-RAVLHDLFML-----TT------------FPFSRFILIGIANAIDLADRFLPRLQSM--NCKP 299 (517)
Q Consensus 240 ~~vI~iDEiD~L~~~~-~~~L~~l~~~-----~~------------~~~~~v~lI~ian~~~~~~~l~~~l~sr--~~~~ 299 (517)
.-||||||+..|.... +..|..+.+- .. .-...+.+|++.|..++ ..+.+...+| +++.
T Consensus 226 gGVLiIdei~lL~~~~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~~l-~~l~~~~~~r~~g~~y 304 (647)
T COG1067 226 GGVLIIDEIGLLAQPLQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNREDL-EDLHEPDRSRIEGFGY 304 (647)
T ss_pred CcEEEEEhhhhhCcHHHHHHHHHHHhccccccCcCccccCcccCCCCcccceEEEeeCCHHHH-HhhcccCHHHHhhcce
Confidence 3599999999997543 3444444433 11 11246777776664332 3344555554 2221
Q ss_pred eEEEeCCC---CHHHHHHHHHHHHhhh----ccCCCChhHHHHHHHHHHHHhCC-------HHHHHHHHHHHHHHHHHHH
Q 010136 300 LVVTFRAY---SKDQIIRILQERLMEL----SYIVFQPQALELCARKVAAASGD-------MRKALSVCRSAIEILEAEM 365 (517)
Q Consensus 300 ~~i~f~p~---~~~e~~~IL~~rl~~~----~~~~~~~~ai~~ia~~~~~~~Gd-------~R~al~ll~~A~~~a~~~~ 365 (517)
...|..+ +.+.....++...+.+ ....++.+|++.+.+...+..|+ +|.+.++++.|..+|..++
T Consensus 305 -~ae~~~~m~~~~~nr~k~~~~~~q~v~~d~~ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~lv~~A~~ia~~~~ 383 (647)
T COG1067 305 -EAEFEDTMPITDANRSKLVQFYVQELARDGNIPHLDKDAVEELIREAARRAGDQNKLTLRLRDLGNLVREAGDIAVSEG 383 (647)
T ss_pred -EEEEcCCCCCChHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhccccceeccCHHHHHHHHHHhhHHHhcCC
Confidence 3566543 4555555555444322 23578899998888877766665 7899999999999999887
Q ss_pred HhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhc
Q 010136 366 RESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTF 410 (517)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~ 410 (517)
.. .|+.+||.+|++...
T Consensus 384 ~~----------------------------~I~ae~Ve~a~~~~~ 400 (647)
T COG1067 384 RK----------------------------LITAEDVEEALQKRE 400 (647)
T ss_pred cc----------------------------cCcHHHHHHHHHhhh
Confidence 66 899999999998844
No 436
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.18 E-value=0.21 Score=50.88 Aligned_cols=146 Identities=16% Similarity=0.189 Sum_probs=96.3
Q ss_pred HHHHHHhhcCcCCCCCCCCCcHHHHHHHHHHHHHhhcc---------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHh
Q 010136 109 QMSAVREALHVSTAPSTIVCREDEQKKVLEFCKKNLEE---------EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKE 179 (517)
Q Consensus 109 ~~~~~~~~l~~~~~p~~l~gRe~e~~~l~~~L~~~l~~---------~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~ 179 (517)
.+...++......+|..+-..+.-+.-+.+-|...+.+ ..+..++++|--|+||||++-.++..+...
T Consensus 51 fi~~ikera~g~ev~~~l~p~q~~iKiV~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~--- 127 (451)
T COG0541 51 FIKRIKERALGEEVPKGLTPGQQFIKIVYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKK--- 127 (451)
T ss_pred HHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHc---
Confidence 34556666666667777888888777777777766542 225579999999999999999999888762
Q ss_pred cCCCCceEEEEeCCCCC-CHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCch
Q 010136 180 AGLQQPEVFSINCTSLT-NTSEIFSKILLKLQPRKKLN-GSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRA 257 (517)
Q Consensus 180 ~~~~~~~~v~vn~~~~~-s~~~i~~~i~~~l~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~ 257 (517)
+ ..+.-|.|-.++ ...+=+..+..+++...-.. .+.++.+...+.+... .....-+|++|=+-++.. +.+
T Consensus 128 -~---~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a---k~~~~DvvIvDTAGRl~i-de~ 199 (451)
T COG0541 128 -G---KKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA---KEEGYDVVIVDTAGRLHI-DEE 199 (451)
T ss_pred -C---CceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH---HHcCCCEEEEeCCCcccc-cHH
Confidence 2 356666666553 23445677788887655444 2445666666666532 233457999999888755 234
Q ss_pred HHHHHhcc
Q 010136 258 VLHDLFML 265 (517)
Q Consensus 258 ~L~~l~~~ 265 (517)
.+.++-+.
T Consensus 200 Lm~El~~I 207 (451)
T COG0541 200 LMDELKEI 207 (451)
T ss_pred HHHHHHHH
Confidence 44444443
No 437
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.18 E-value=0.0053 Score=61.76 Aligned_cols=37 Identities=16% Similarity=0.299 Sum_probs=30.7
Q ss_pred HHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 136 VLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 136 l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
+..+|..++. ...+++|+|++|+||||++++++..+.
T Consensus 151 ~~~~l~~~v~--~~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 151 LEAFLHACVV--GRLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred HHHHHHHHHH--cCCeEEEECCCCccHHHHHHHHHcccC
Confidence 5566666665 568999999999999999999987764
No 438
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.17 E-value=0.034 Score=53.01 Aligned_cols=51 Identities=14% Similarity=0.056 Sum_probs=32.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSE 200 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~ 200 (517)
+..+.|+|+||+|||+++..++....... +.+-..-.++|+++....+...
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~-~~~g~~~~viyi~~e~~~~~~r 69 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPI-ELGGLEGKAVYIDTEGTFRPER 69 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCcc-ccCCCCccEEEEeCCCCcCHHH
Confidence 45688999999999999999975432110 0000113688998876444443
No 439
>PRK14532 adenylate kinase; Provisional
Probab=96.17 E-value=0.0035 Score=57.66 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l 173 (517)
+++|.|+||+||||+++.+++.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998765
No 440
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.16 E-value=0.065 Score=56.51 Aligned_cols=43 Identities=23% Similarity=0.416 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhhc------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 133 QKKVLEFCKKNLE------EEKAGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 133 ~~~l~~~L~~~l~------~~~~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
...+...|...+. -..++.+.|+||+|+||||++..++..+..
T Consensus 328 ~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~ 376 (559)
T PRK12727 328 RGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQRFAA 376 (559)
T ss_pred HHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4445555555332 123578899999999999999999877643
No 441
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.15 E-value=0.014 Score=55.78 Aligned_cols=132 Identities=16% Similarity=0.077 Sum_probs=70.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCC-----HHHHHHHHHHHhCCCCCC----CCC
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTN-----TSEIFSKILLKLQPRKKL----NGS 218 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s-----~~~i~~~i~~~l~~~~~~----~~~ 218 (517)
.+..+-|.|++||||||+++.++.-.... .--+++++..... ...-+.+++..++..... +..
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt--------~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhe 109 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT--------SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHE 109 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC--------CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcc
Confidence 56788899999999999999998765421 1246666654322 223345555555422110 001
Q ss_pred CCHHHHHHHHHHhhhccCCCceEEEEEeCcchhccc-CchHHHHHhccCCCCCCcEEEEEEECCCCcchhhccc
Q 010136 219 TSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITR-DRAVLHDLFMLTTFPFSRFILIGIANAIDLADRFLPR 291 (517)
Q Consensus 219 ~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~-~~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~ 291 (517)
.+ ..+.+++.-... -.-.|.+|+.||.-....- .|..+.+|+...+ ..-.+..++|+.++.....+..+
T Consensus 110 lS-GGQrQRi~IARA--Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~isdr 179 (268)
T COG4608 110 LS-GGQRQRIGIARA--LALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYISDR 179 (268)
T ss_pred cC-chhhhhHHHHHH--HhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhhccc
Confidence 11 112222221111 1346789999999887654 2333333332211 12356677778876655544443
No 442
>PLN02200 adenylate kinase family protein
Probab=96.11 E-value=0.0043 Score=59.19 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
+..++|.|+||+||||+++.+++.+
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998765
No 443
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.10 E-value=0.0069 Score=53.90 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.+..+.|.|+.|+|||++++.++..+.
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456888999999999999999976653
No 444
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.09 E-value=0.025 Score=62.33 Aligned_cols=49 Identities=20% Similarity=0.350 Sum_probs=33.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKI 205 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i 205 (517)
....+|.|.||||||+++-.+.+.|.... .-|-+.+..+.....++.++
T Consensus 685 edy~LI~GMPGTGKTTtI~~LIkiL~~~g--------kkVLLtsyThsAVDNILiKL 733 (1100)
T KOG1805|consen 685 EDYALILGMPGTGKTTTISLLIKILVALG--------KKVLLTSYTHSAVDNILIKL 733 (1100)
T ss_pred cchheeecCCCCCchhhHHHHHHHHHHcC--------CeEEEEehhhHHHHHHHHHH
Confidence 46789999999999999999998887532 23445555544444444333
No 445
>PRK14530 adenylate kinase; Provisional
Probab=96.09 E-value=0.0054 Score=57.74 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=22.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.+.++|.|+||+||||+++.+++.++
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34799999999999999999988763
No 446
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.06 E-value=0.011 Score=70.12 Aligned_cols=162 Identities=15% Similarity=0.125 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHH-HHHHHh
Q 010136 131 DEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFS-KILLKL 209 (517)
Q Consensus 131 ~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~-~i~~~l 209 (517)
..++....-+..... .+...++|-||.|+|||.+++.+++..+ ..++.+|-..+++....+. ......
T Consensus 423 ~~vq~~la~~~~a~~-~~~~pillqG~tssGKtsii~~la~~~g----------~~~vrinnhehtd~qeyig~y~~~~~ 491 (1856)
T KOG1808|consen 423 PRVQKNLADLARAIS-SGKFPILLQGPTSSGKTSIIKELARATG----------KNIVRINNHEHTDLQEYIGTYVADDN 491 (1856)
T ss_pred HHHHHHHHHHHHHHh-cCCCCeEEecCcCcCchhHHHHHHHHhc----------cCceehhccccchHHHHHHhhhcCCC
Confidence 333344444444333 2234799999999999999999998876 3689999999877666543 121111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCC---C--------CCCcEEEEEE
Q 010136 210 QPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTT---F--------PFSRFILIGI 278 (517)
Q Consensus 210 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~---~--------~~~~v~lI~i 278 (517)
+... -. ...+...+ .+...+|+||+....+..-++|..++++.. . +...+.+.++
T Consensus 492 g~l~-----fr-eg~LV~Al--------r~G~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfat 557 (1856)
T KOG1808|consen 492 GDLV-----FR-EGVLVQAL--------RNGDWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFAT 557 (1856)
T ss_pred CCee-----ee-hhHHHHHH--------HhCCEEEeccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhh
Confidence 1100 00 11122222 134688999999888888889999888821 1 2233444544
Q ss_pred ECCCCcch---hhcccccccCCCceEEEeCCCCHHHHHHHHHHHH
Q 010136 279 ANAIDLAD---RFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERL 320 (517)
Q Consensus 279 an~~~~~~---~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl 320 (517)
-|...... .+...+.+| | ..++|.....+++..|+..+.
T Consensus 558 qn~~~~y~grk~lsRa~~~r-f--~e~~f~~~~e~e~~~i~~~~~ 599 (1856)
T KOG1808|consen 558 QNPPGTYGGRKILSRALRNR-F--IELHFDDIGEEELEEILEHRC 599 (1856)
T ss_pred ccCccccchhhhhhhccccc-c--hhhhhhhcCchhhhhhhcccc
Confidence 45432111 233445555 4 578899999999999998775
No 447
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.05 E-value=0.0071 Score=54.94 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=24.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
.+..++|.|++|+||||+++.+++.+..
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999988864
No 448
>PRK05629 hypothetical protein; Validated
Probab=96.05 E-value=1 Score=45.08 Aligned_cols=165 Identities=12% Similarity=0.127 Sum_probs=90.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNL 228 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~ 228 (517)
.+..+|||+-- .++....+.+.......+...+.++++++.... ...++ .... .+ +
T Consensus 6 ~~vyL~~G~e~----~l~~~~~~~i~~~~~~~~~~~~n~~~~d~~e~~-~~~l~----~~~t--------~s-------l 61 (318)
T PRK05629 6 PPVHLVLGDDE----FLAERARLNIVHDIRSSMADSLQVTTLKASEVS-QGELL----DALS--------PS-------L 61 (318)
T ss_pred CceEEEEeCHH----HHHHHHHHHHHHHHhccCCCCCceEEeecccCC-HHHHH----HhhC--------cC-------c
Confidence 45678888653 444444444444443444455778888877653 23322 1110 00 1
Q ss_pred HHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCC
Q 010136 229 YSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYS 308 (517)
Q Consensus 229 ~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~ 308 (517)
| ....+|+++..+.......+.+...+..+ +. ..++|.++...+-...+...++.. ...+.|.++.
T Consensus 62 F--------~~~rlV~v~~~~~~~~~~~~~l~~~l~~~--~~-~~~Lil~~~~~~~~kk~~K~l~k~---~~~ve~~~~~ 127 (318)
T PRK05629 62 F--------GEDRVIVLTNMEQAGKEPTDLALSAAVDP--SP-GIYLIIMHSGGGRTKSMVPKLEKI---AVVHEAAKLK 127 (318)
T ss_pred c--------CCceEEEEeChHhcChhHHHHHHHHHhCC--CC-CeEEEEEcCCcchhhHHHHHHHhc---ceEeeCCCCC
Confidence 2 23467888887664322223333333222 22 223333343322222232334433 2578998999
Q ss_pred HHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHH
Q 010136 309 KDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCR 355 (517)
Q Consensus 309 ~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~ 355 (517)
..++...+..++.... ..++++++++++. ...+|+..+-+-+.
T Consensus 128 ~~~l~~wi~~~~~~~g-~~i~~~A~~~L~~---~~g~dl~~l~~Ele 170 (318)
T PRK05629 128 PRERPGWVTQEFKNHG-VRPTPDVVHALLE---GVGSDLRELASAIS 170 (318)
T ss_pred HHHHHHHHHHHHHHcC-CCCCHHHHHHHHH---HHCccHHHHHHHHH
Confidence 9999999999997543 3789999999877 45677765444443
No 449
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.02 E-value=0.024 Score=60.26 Aligned_cols=92 Identities=18% Similarity=0.177 Sum_probs=54.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCC-------------
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKK------------- 214 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~------------- 214 (517)
.+..++|.||||+|||+++..++.+... .|. +++|++..+ ++.++.... ..++-...
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~----~ge---~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~ 331 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACA----NKE---RAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGLLKIICA 331 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH----CCC---eEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCcEEEEEc
Confidence 3557999999999999999998876543 222 478888655 456655553 34332110
Q ss_pred CCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhc
Q 010136 215 LNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLI 252 (517)
Q Consensus 215 ~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~ 252 (517)
.+......+.+..+... . ...++.+|+||-+..+.
T Consensus 332 ~p~~~~~~~~~~~i~~~-i--~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 332 YPESAGLEDHLQIIKSE-I--ADFKPARIAIDSLSALA 366 (484)
T ss_pred ccccCChHHHHHHHHHH-H--HHcCCCEEEEcCHHHHH
Confidence 00111223334444331 1 23456789999998774
No 450
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.02 E-value=0.047 Score=54.94 Aligned_cols=101 Identities=14% Similarity=0.005 Sum_probs=54.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCC-------CCCCCH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKL-------NGSTSP 221 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~-------~~~~~~ 221 (517)
+....|+|+||||||+++..++-...-.....|. .-.++||+....-++..+. .++..++-.... .....
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~-~~~vvyIdTE~tF~peRl~-~ia~~~g~d~~~~l~~I~~~~~~~- 202 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGG-NGKVAYIDTEGTFRPDRIV-PIAERFGMDADAVLDNIIYARAYT- 202 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCC-CceEEEEEcCCCCCHHHHH-HHHHHcCCChhhhcCeEEEecCCC-
Confidence 3456699999999999999886433211111122 2378999987755666653 345555332110 00111
Q ss_pred HHHHHHHHHh--hhccCCCceEEEEEeCcchhcc
Q 010136 222 LQYLQNLYSQ--KLHSSVMKMMLIIADELDYLIT 253 (517)
Q Consensus 222 ~~~l~~~~~~--~~~~~~~~~~vI~iDEiD~L~~ 253 (517)
.+.+..++.. ... ...+..+||||-+-.+..
T Consensus 203 ~e~~~~~l~~l~~~i-~~~~~~LvVIDSital~r 235 (344)
T PLN03187 203 YEHQYNLLLGLAAKM-AEEPFRLLIVDSVIALFR 235 (344)
T ss_pred HHHHHHHHHHHHHHH-HhcCCCEEEEeCcHHhhh
Confidence 2222222211 001 123467999999887643
No 451
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.01 E-value=0.18 Score=53.06 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=23.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
+..+.|.||.|+||||++..++..+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH
Confidence 46788999999999999999998764
No 452
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.01 E-value=0.0051 Score=54.20 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 010136 152 LYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 152 lli~G~pGtGKT~l~~~v~~~l 173 (517)
++|+|+||+||||+++.+++.+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 6899999999999999987764
No 453
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=96.00 E-value=0.012 Score=54.51 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=26.2
Q ss_pred ceEEEEEeCcchhcccCchH---HHHHhcc-CCCCCCcEEEEEEECCCCcchhhcccccc
Q 010136 239 KMMLIIADELDYLITRDRAV---LHDLFML-TTFPFSRFILIGIANAIDLADRFLPRLQS 294 (517)
Q Consensus 239 ~~~vI~iDEiD~L~~~~~~~---L~~l~~~-~~~~~~~v~lI~ian~~~~~~~l~~~l~s 294 (517)
...||||||++......... ....+++ .......+-+|.+|.. +..+++.++.
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~---~~~id~~ir~ 135 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQS---PSQIDKFIRD 135 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES----GGGB-HHHHC
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCC---HHHHhHHHHH
Confidence 45799999999987653321 1122222 2234445667777885 4445555543
No 454
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.00 E-value=0.022 Score=59.09 Aligned_cols=84 Identities=17% Similarity=0.155 Sum_probs=48.4
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHH
Q 010136 147 EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQ 226 (517)
Q Consensus 147 ~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~ 226 (517)
.+.+-++++||.|+||||++.++++.+.... ..++.|.-+--.....+ .++. .....|......|+
T Consensus 256 ~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~-------~nI~TiEDPVE~~~~gI-----~Q~q--VN~k~gltfa~~LR 321 (500)
T COG2804 256 RPQGLILVTGPTGSGKTTTLYAALSELNTPE-------RNIITIEDPVEYQLPGI-----NQVQ--VNPKIGLTFARALR 321 (500)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCC-------ceEEEeeCCeeeecCCc-----ceee--cccccCCCHHHHHH
Confidence 3567789999999999999999999887421 12333332211000000 0110 11112444455566
Q ss_pred HHHHhhhccCCCceEEEEEeCcchh
Q 010136 227 NLYSQKLHSSVMKMMLIIADELDYL 251 (517)
Q Consensus 227 ~~~~~~~~~~~~~~~vI~iDEiD~L 251 (517)
.++. ..|-||.+.||-..
T Consensus 322 a~LR-------qDPDvImVGEIRD~ 339 (500)
T COG2804 322 AILR-------QDPDVIMVGEIRDL 339 (500)
T ss_pred HHhc-------cCCCeEEEeccCCH
Confidence 6664 46789999999654
No 455
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=95.98 E-value=0.0072 Score=60.64 Aligned_cols=49 Identities=12% Similarity=0.180 Sum_probs=32.2
Q ss_pred CceEEEEEeCcchhccc--CchHHHHHhccCCCCCCcEEEEEEECCCCcchhh
Q 010136 238 MKMMLIIADELDYLITR--DRAVLHDLFMLTTFPFSRFILIGIANAIDLADRF 288 (517)
Q Consensus 238 ~~~~vI~iDEiD~L~~~--~~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l 288 (517)
.++.++++||++..... .+.+...+-++.. ...+.++++++..++.+.|
T Consensus 524 erpn~~~iDEF~AhLD~~TA~rVArkiselaR--e~giTlivvThrpEv~~AL 574 (593)
T COG2401 524 ERPNVLLIDEFAAHLDELTAVRVARKISELAR--EAGITLIVVTHRPEVGNAL 574 (593)
T ss_pred cCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHH--HhCCeEEEEecCHHHHhcc
Confidence 45679999999988764 2345555555532 2356688888876665554
No 456
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=95.96 E-value=0.041 Score=57.74 Aligned_cols=49 Identities=12% Similarity=0.054 Sum_probs=37.4
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
..+.-|.-+.+.+..+....-. ....+|+-|+|+|||.++..++..+..
T Consensus 33 ~~~~lr~yQ~~al~a~~~~~~~---~~~gvivlpTGaGKT~va~~~~~~~~~ 81 (442)
T COG1061 33 FEFELRPYQEEALDALVKNRRT---ERRGVIVLPTGAGKTVVAAEAIAELKR 81 (442)
T ss_pred cCCCCcHHHHHHHHHHHhhccc---CCceEEEeCCCCCHHHHHHHHHHHhcC
Confidence 3455677777777777665321 677889999999999999999988764
No 457
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.96 E-value=0.0056 Score=55.68 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.++|.|+||+||||+++.+++.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998874
No 458
>PRK06217 hypothetical protein; Validated
Probab=95.95 E-value=0.0064 Score=55.66 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.|+|.|.||+||||+++.+++.++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999988763
No 459
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.95 E-value=0.08 Score=48.63 Aligned_cols=47 Identities=19% Similarity=0.193 Sum_probs=30.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcC---CCCceEEEEeCCCC
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAG---LQQPEVFSINCTSL 195 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~---~~~~~~v~vn~~~~ 195 (517)
+...+|+|+||+|||+++..++..+.....-.+ .....++|+++...
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 457899999999999999999887763111001 02257899998764
No 460
>PRK13949 shikimate kinase; Provisional
Probab=95.92 E-value=0.0067 Score=54.78 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=22.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
..++|+|+||+|||++++.+++.++
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999988764
No 461
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.92 E-value=0.012 Score=58.76 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=29.1
Q ss_pred HHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 136 VLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 136 l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
...+|..++. ...+++|+|++|+||||++++++..+
T Consensus 137 ~~~~L~~~v~--~~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 137 QREAIIAAVR--AHRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred HHHHHHHHHH--cCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 3455666665 45899999999999999999998765
No 462
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.91 E-value=0.063 Score=53.46 Aligned_cols=101 Identities=16% Similarity=0.044 Sum_probs=54.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCC-------CCCCCH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKL-------NGSTSP 221 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~-------~~~~~~ 221 (517)
+....|+|+||+|||+++..++-...- ..+.+...-.++||+....-++..+. .+++.++..... ..-..
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~-~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~- 172 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQL-PREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYT- 172 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhc-chhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCC-
Confidence 446779999999999999887643221 01111112368999987655666653 455555432110 00011
Q ss_pred HHHHHHHHHh--hhccCCCceEEEEEeCcchhcc
Q 010136 222 LQYLQNLYSQ--KLHSSVMKMMLIIADELDYLIT 253 (517)
Q Consensus 222 ~~~l~~~~~~--~~~~~~~~~~vI~iDEiD~L~~ 253 (517)
.+.+...+.. ... ......+||||-+-.+..
T Consensus 173 ~e~~~~~l~~l~~~i-~~~~~~LvVIDSisal~r 205 (313)
T TIGR02238 173 SEHQMELLDYLAAKF-SEEPFRLLIVDSIMALFR 205 (313)
T ss_pred HHHHHHHHHHHHHHh-hccCCCEEEEEcchHhhh
Confidence 1222222211 011 133567899999987753
No 463
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.91 E-value=0.005 Score=55.13 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 010136 152 LYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 152 lli~G~pGtGKT~l~~~v~~~l 173 (517)
++|.|++|+||||+++.+++.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998876
No 464
>PRK14527 adenylate kinase; Provisional
Probab=95.90 E-value=0.0071 Score=55.80 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.+..++|+|+||+||||+++.+++.++
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999987653
No 465
>PRK08233 hypothetical protein; Provisional
Probab=95.89 E-value=0.0064 Score=55.39 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=22.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
+..+.|.|+||+||||+++.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35678999999999999999988764
No 466
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.88 E-value=0.012 Score=53.42 Aligned_cols=39 Identities=18% Similarity=0.280 Sum_probs=29.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCC
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCT 193 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~ 193 (517)
.+..++|.|+||+|||++++.++..+... + ..+.+++..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~----g---~~v~~id~D 41 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREA----G---YPVEVLDGD 41 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc----C---CeEEEEcCc
Confidence 45678999999999999999999988531 1 245667653
No 467
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.88 E-value=0.0072 Score=56.90 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.++|+|+||+||||+++.+++.++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999987753
No 468
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.88 E-value=0.0056 Score=56.44 Aligned_cols=23 Identities=26% Similarity=0.535 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.++|+|+||+|||++++.+++.+
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 37899999999999999998774
No 469
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.88 E-value=0.01 Score=50.15 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=29.5
Q ss_pred HHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 135 KVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 135 ~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
++...|...+. .+..++|.|+=|+|||++++.+++.++
T Consensus 3 ~la~~l~~~l~--~g~vi~L~GdLGaGKTtf~r~l~~~lg 40 (123)
T PF02367_consen 3 RLAKKLAQILK--PGDVILLSGDLGAGKTTFVRGLARALG 40 (123)
T ss_dssp HHHHHHHHHHS--S-EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCC--CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34555555553 456899999999999999999999875
No 470
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.87 E-value=0.015 Score=53.10 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..+.|.|+.|+||||+++.++..+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56688899999999999999997654
No 471
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.86 E-value=0.0075 Score=52.70 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHH
Q 010136 152 LYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 152 lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
+.|+|+||+|||++++.++..++
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999988763
No 472
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.79 E-value=0.0082 Score=54.66 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
..++|.||+|+||||+++.++..+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3578999999999999999887754
No 473
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.79 E-value=0.013 Score=53.26 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=23.0
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 147 EKAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 147 ~~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
..+..+.|.||.|+||||+++.++..+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 356688899999999999999987654
No 474
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.79 E-value=0.0062 Score=57.47 Aligned_cols=24 Identities=21% Similarity=0.106 Sum_probs=21.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~ 171 (517)
.+..++|.||.|+|||++.+.++.
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999999999987
No 475
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=95.78 E-value=0.12 Score=48.04 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~ 172 (517)
...+.|.|++|+|||++++.+...
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999998764
No 476
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.77 E-value=0.24 Score=51.26 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
+..+.|.||+|+||||++..++..+
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 5578999999999999999998754
No 477
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.76 E-value=0.0085 Score=56.86 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
+-.++|.||||+||||+++.+++.++
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34599999999999999999988753
No 478
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=95.76 E-value=0.092 Score=61.13 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=19.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~ 172 (517)
...++|+|++||||||.+=.++.+
T Consensus 89 ~~VviI~GeTGSGKTTqlPq~lle 112 (1294)
T PRK11131 89 HQVVIVAGETGSGKTTQLPKICLE 112 (1294)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999976655544
No 479
>PRK10436 hypothetical protein; Provisional
Probab=95.75 E-value=0.042 Score=57.64 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=24.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
..+.++|+||.|+||||++.+++..+.
T Consensus 217 ~~GliLvtGpTGSGKTTtL~a~l~~~~ 243 (462)
T PRK10436 217 PQGLILVTGPTGSGKTVTLYSALQTLN 243 (462)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHhhC
Confidence 568899999999999999999887764
No 480
>PRK06851 hypothetical protein; Provisional
Probab=95.72 E-value=0.021 Score=57.71 Aligned_cols=40 Identities=28% Similarity=0.409 Sum_probs=31.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCC
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSL 195 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~ 195 (517)
...++|.|+||||||++++.++.++... | ..+.+.-|+..
T Consensus 214 ~~~~~i~G~pG~GKstl~~~i~~~a~~~----G---~~v~~~hC~~d 253 (367)
T PRK06851 214 KNRYFLKGRPGTGKSTMLKKIAKAAEER----G---FDVEVYHCGFD 253 (367)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHhC----C---CeEEEEeCCCC
Confidence 4568999999999999999999887642 3 35777777764
No 481
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=95.70 E-value=0.25 Score=55.39 Aligned_cols=157 Identities=16% Similarity=0.087 Sum_probs=81.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCC---------
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGST--------- 219 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~--------- 219 (517)
...++|+|.+||||||-+=.+.-+.. .+.+ + ..-+.+.-..-.+.-.+...+..+.+.......|.
T Consensus 188 ~qVvvIsGeTGcGKTTQvpQfiLd~~---~~~~-~-~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGYqvrl~~~~s 262 (924)
T KOG0920|consen 188 NQVVVISGETGCGKTTQVPQFILDEA---IESG-A-ACNIICTQPRRISAISVAERVAKERGESLGEEVGYQVRLESKRS 262 (924)
T ss_pred CceEEEeCCCCCCchhhhhHHHHHHH---HhcC-C-CCeEEecCCchHHHHHHHHHHHHHhccccCCeeeEEEeeecccC
Confidence 57899999999999998877654322 1222 2 12244443333344556666666653222111110
Q ss_pred -------CH-HHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhcc-CCCCCCcEEEEEEECCCC-cchhhc
Q 010136 220 -------SP-LQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFML-TTFPFSRFILIGIANAID-LADRFL 289 (517)
Q Consensus 220 -------~~-~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~-~~~~~~~v~lI~ian~~~-~~~~l~ 289 (517)
.. .-.|+.+.. ...-.....|++||++.=.-...-+|.-+-++ ...+.-++++..+|-+.+ |.+.+
T Consensus 263 ~~t~L~fcTtGvLLr~L~~---~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSAT~dae~fs~YF- 338 (924)
T KOG0920|consen 263 RETRLLFCTTGVLLRRLQS---DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSATLDAELFSDYF- 338 (924)
T ss_pred CceeEEEecHHHHHHHhcc---CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEeeeecchHHHHHHh-
Confidence 01 223333332 22334567899999986544333333333222 233556666666554322 11111
Q ss_pred ccccccCCCceEEEeCCCCHHHHHHHHHHHHh
Q 010136 290 PRLQSMNCKPLVVTFRAYSKDQIIRILQERLM 321 (517)
Q Consensus 290 ~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~ 321 (517)
-+..+++.+..+..-..-.|++.+.
T Consensus 339 -------~~~pvi~i~grtfpV~~~fLEDil~ 363 (924)
T KOG0920|consen 339 -------GGCPVITIPGRTFPVKEYFLEDILS 363 (924)
T ss_pred -------CCCceEeecCCCcchHHHHHHHHHH
Confidence 1335778777776666666665554
No 482
>PLN02459 probable adenylate kinase
Probab=95.70 E-value=0.0063 Score=58.46 Aligned_cols=27 Identities=26% Similarity=0.545 Sum_probs=22.6
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 147 EKAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 147 ~~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
+.+-.++|.||||+||||+++.+++.+
T Consensus 27 ~~~~~ii~~G~PGsGK~T~a~~la~~~ 53 (261)
T PLN02459 27 GRNVNWVFLGCPGVGKGTYASRLSKLL 53 (261)
T ss_pred cCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 334568899999999999999998765
No 483
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.70 E-value=0.14 Score=46.69 Aligned_cols=27 Identities=30% Similarity=0.241 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
..+.+.|||.+|.|||+++-.++-...
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~ 47 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAV 47 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHH
Confidence 468999999999999999988875543
No 484
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.69 E-value=0.019 Score=51.06 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=28.2
Q ss_pred hccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHH
Q 010136 144 LEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDW 176 (517)
Q Consensus 144 l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~ 176 (517)
.....+..++++|.+|+||||++.++.+.|...
T Consensus 18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~ 50 (197)
T COG0529 18 LKGQKGAVIWFTGLSGSGKSTIANALEEKLFAK 50 (197)
T ss_pred HhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHc
Confidence 344567789999999999999999999998864
No 485
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.69 E-value=0.0085 Score=53.67 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=17.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 010136 152 LYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 152 lli~G~pGtGKT~l~~~v~~~ 172 (517)
|.|+|.|||||||+++.+++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999998865
No 486
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=95.68 E-value=0.05 Score=49.72 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=21.6
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHH
Q 010136 147 EKAGSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 147 ~~~~~lli~G~pGtGKT~l~~~v~~ 171 (517)
.....+++.|++|+|||++++.+..
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~ 39 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKN 39 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhc
Confidence 3457899999999999999999864
No 487
>PLN02674 adenylate kinase
Probab=95.68 E-value=0.017 Score=55.15 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=22.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
....++|.||||+||||.++.+++.+
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHc
Confidence 35679999999999999999998764
No 488
>PRK02496 adk adenylate kinase; Provisional
Probab=95.67 E-value=0.0096 Score=54.51 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.++|.|+||+|||++++.+++.++
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~ 26 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLH 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999987753
No 489
>PRK14528 adenylate kinase; Provisional
Probab=95.66 E-value=0.011 Score=54.42 Aligned_cols=24 Identities=25% Similarity=0.402 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
..++|.|+||+|||++++.+++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999997765
No 490
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=95.65 E-value=0.042 Score=59.48 Aligned_cols=41 Identities=27% Similarity=0.395 Sum_probs=29.7
Q ss_pred cHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 129 REDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 129 Re~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.+.+.+.+...+. ...+.++|+||+|+||||++.++++.+.
T Consensus 301 ~~~~~~~l~~~~~-----~~~Glilv~G~tGSGKTTtl~a~l~~~~ 341 (564)
T TIGR02538 301 EPDQKALFLEAIH-----KPQGMVLVTGPTGSGKTVSLYTALNILN 341 (564)
T ss_pred CHHHHHHHHHHHH-----hcCCeEEEECCCCCCHHHHHHHHHHhhC
Confidence 4444444444433 2567899999999999999999888764
No 491
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.64 E-value=0.0074 Score=53.34 Aligned_cols=20 Identities=25% Similarity=0.559 Sum_probs=18.4
Q ss_pred EEcCCCCcHHHHHHHHHHHH
Q 010136 154 VCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 154 i~G~pGtGKT~l~~~v~~~l 173 (517)
|.||||+|||++++.+++.+
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999875
No 492
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.63 E-value=0.025 Score=54.98 Aligned_cols=49 Identities=18% Similarity=0.263 Sum_probs=35.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKI 205 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i 205 (517)
.+..++|+|+||||||+++..++.+..+. |. +++||+.... +..++...
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~----ge---~vlyvs~~e~--~~~l~~~~ 70 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGARE----GE---PVLYVSTEES--PEELLENA 70 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhc----CC---cEEEEEecCC--HHHHHHHH
Confidence 46689999999999999999998776542 33 4788887653 55555444
No 493
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.61 E-value=0.02 Score=62.70 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
.+.++|.||||||||+++..++.++..
T Consensus 173 ~~~~lI~GpPGTGKT~t~~~ii~~~~~ 199 (637)
T TIGR00376 173 KDLFLIHGPPGTGKTRTLVELIRQLVK 199 (637)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 367889999999999999998877653
No 494
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=95.59 E-value=0.036 Score=57.42 Aligned_cols=31 Identities=26% Similarity=0.308 Sum_probs=24.3
Q ss_pred CCCeE-EEEcCCCCcHHHHHHHHHHHHHHHHH
Q 010136 148 KAGSL-YVCGCPGTGKSLSMEKVQHYLVDWAK 178 (517)
Q Consensus 148 ~~~~l-li~G~pGtGKT~l~~~v~~~l~~~~~ 178 (517)
+++.| -+.||||||||||++.+.+.+....-
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti 98 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTI 98 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHhhh
Confidence 34444 49999999999999999888765443
No 495
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.58 E-value=0.011 Score=52.71 Aligned_cols=26 Identities=23% Similarity=0.223 Sum_probs=23.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
..+++|.|++|+||||+.+.+++.|.
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~ 27 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALN 27 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcC
Confidence 35799999999999999999999875
No 496
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.58 E-value=0.02 Score=41.99 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
...+|+|+.|+||||++.++.-.|.
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHc
Confidence 3799999999999999999876554
No 497
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.57 E-value=0.019 Score=57.23 Aligned_cols=44 Identities=18% Similarity=0.151 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhhc----cCCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 131 DEQKKVLEFCKKNLE----EEKAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 131 ~e~~~l~~~L~~~l~----~~~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
++.+.+...++..+. -....+++|+|+||+|||++++.+++.++
T Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg 158 (309)
T PRK08154 111 AQLARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARLG 158 (309)
T ss_pred HHHHHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 344445555544333 23466899999999999999999988774
No 498
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=95.56 E-value=0.03 Score=48.62 Aligned_cols=46 Identities=17% Similarity=0.179 Sum_probs=38.2
Q ss_pred CCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 127 VCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 127 ~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
...+++..++...|...+. .+..+++.|+=|.|||+++|.+++.+.
T Consensus 5 ~~~~~~t~~lg~~l~~~l~--~g~Vv~L~GdLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 5 LPDEEATLALGERLAEALK--AGDVVLLSGDLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred cCCHHHHHHHHHHHHhhCC--CCCEEEEEcCCcCChHHHHHHHHHHcC
Confidence 3456677778888877764 577899999999999999999999886
No 499
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.55 E-value=0.059 Score=53.03 Aligned_cols=97 Identities=14% Similarity=0.187 Sum_probs=59.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHH-HHhCCCCCC-CCCCCHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKIL-LKLQPRKKL-NGSTSPLQYL 225 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~-~~l~~~~~~-~~~~~~~~~l 225 (517)
.+..++++|..|+||||++-.++..+... | ..++-..|-.++....=--.+| +.++...-. ..|..+....
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~----g---~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVa 210 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQ----G---KSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVA 210 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHC----C---CeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHH
Confidence 46689999999999999999999887753 3 3577777766643322111122 333322211 1344445444
Q ss_pred HHHHHhhhccCCCceEEEEEeCcchhccc
Q 010136 226 QNLYSQKLHSSVMKMMLIIADELDYLITR 254 (517)
Q Consensus 226 ~~~~~~~~~~~~~~~~vI~iDEiD~L~~~ 254 (517)
...+.. +...+.-++++|=+-+|.++
T Consensus 211 fDAi~~---Akar~~DvvliDTAGRLhnk 236 (340)
T COG0552 211 FDAIQA---AKARGIDVVLIDTAGRLHNK 236 (340)
T ss_pred HHHHHH---HHHcCCCEEEEeCcccccCc
Confidence 455442 12345578999999988654
No 500
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=95.55 E-value=0.034 Score=56.72 Aligned_cols=21 Identities=19% Similarity=0.039 Sum_probs=17.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 010136 152 LYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 152 lli~G~pGtGKT~l~~~v~~~ 172 (517)
++|.+|+|+|||.++-..+-.
T Consensus 2 vvi~apTGsGKT~~~~~~~l~ 22 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALH 22 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 689999999999997766543
Done!