Query 010136
Match_columns 517
No_of_seqs 398 out of 3755
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 20:41:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010136.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010136hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v1u_A Cell division control p 100.0 1.3E-42 4.4E-47 356.2 35.4 373 110-516 5-387 (387)
2 3te6_A Regulatory protein SIR3 100.0 3.8E-41 1.3E-45 331.7 19.5 272 115-411 10-317 (318)
3 2qby_A CDC6 homolog 1, cell di 100.0 1E-39 3.5E-44 334.4 30.0 370 110-515 6-384 (386)
4 2qby_B CDC6 homolog 3, cell di 100.0 7.1E-39 2.4E-43 328.5 30.6 353 110-509 6-368 (384)
5 1fnn_A CDC6P, cell division co 100.0 7E-38 2.4E-42 321.5 31.4 356 113-509 6-382 (389)
6 1w5s_A Origin recognition comp 100.0 6.1E-35 2.1E-39 302.0 31.7 364 111-508 9-401 (412)
7 4b4t_I 26S protease regulatory 99.9 9.8E-25 3.4E-29 220.0 12.4 227 121-414 179-428 (437)
8 4b4t_J 26S protease regulatory 99.9 3.1E-24 1E-28 216.0 15.6 222 124-411 148-391 (405)
9 4b4t_L 26S protease subunit RP 99.9 1.3E-23 4.6E-28 214.8 15.0 226 121-412 178-425 (437)
10 4b4t_M 26S protease regulatory 99.9 8.6E-24 2.9E-28 216.0 12.9 224 122-412 179-425 (434)
11 4b4t_H 26S protease regulatory 99.9 3.8E-23 1.3E-27 210.4 15.9 224 121-410 206-451 (467)
12 3pfi_A Holliday junction ATP-d 99.9 5.8E-21 2E-25 191.9 28.0 271 124-488 29-316 (338)
13 4b4t_K 26S protease regulatory 99.9 1.7E-22 5.9E-27 206.3 16.5 223 122-410 170-415 (428)
14 1in4_A RUVB, holliday junction 99.9 2E-20 6.9E-25 187.6 25.9 273 124-488 25-313 (334)
15 3eie_A Vacuolar protein sortin 99.9 1.2E-20 4E-25 188.4 18.0 206 123-367 17-241 (322)
16 3uk6_A RUVB-like 2; hexameric 99.9 3.4E-20 1.2E-24 188.5 21.5 264 117-429 37-348 (368)
17 2qp9_X Vacuolar protein sortin 99.8 5.1E-20 1.7E-24 186.0 19.4 206 122-367 49-274 (355)
18 3h4m_A Proteasome-activating n 99.8 2.7E-20 9.3E-25 182.4 16.8 222 121-411 14-260 (285)
19 1xwi_A SKD1 protein; VPS4B, AA 99.8 1.9E-19 6.7E-24 179.3 22.8 207 123-367 11-236 (322)
20 1hqc_A RUVB; extended AAA-ATPa 99.8 3.2E-19 1.1E-23 178.0 23.5 274 123-488 11-301 (324)
21 3vfd_A Spastin; ATPase, microt 99.8 1.9E-19 6.5E-24 184.4 20.3 235 123-413 114-369 (389)
22 2qz4_A Paraplegin; AAA+, SPG7, 99.8 1.5E-19 5.1E-24 174.7 17.8 223 122-412 4-252 (262)
23 1sxj_B Activator 1 37 kDa subu 99.8 1.7E-18 5.9E-23 172.3 25.6 273 124-478 21-294 (323)
24 2chg_A Replication factor C sm 99.8 1.5E-18 5E-23 162.7 22.7 208 124-407 17-224 (226)
25 1lv7_A FTSH; alpha/beta domain 99.8 1.4E-18 4.9E-23 167.5 22.4 220 122-411 10-254 (257)
26 2c9o_A RUVB-like 1; hexameric 99.8 7.8E-19 2.7E-23 183.4 19.7 133 241-411 297-439 (456)
27 1ofh_A ATP-dependent HSL prote 99.8 2E-19 6.9E-24 178.1 14.1 238 124-411 15-301 (310)
28 1sxj_D Activator 1 41 kDa subu 99.8 4.1E-18 1.4E-22 171.9 23.8 214 117-362 27-243 (353)
29 3d8b_A Fidgetin-like protein 1 99.8 8.5E-19 2.9E-23 177.3 18.5 234 123-412 83-337 (357)
30 3cf0_A Transitional endoplasmi 99.8 3.1E-19 1.1E-23 176.3 14.9 247 123-413 14-285 (301)
31 3pvs_A Replication-associated 99.8 2.1E-18 7.1E-23 178.8 21.2 208 124-409 26-244 (447)
32 3b9p_A CG5977-PA, isoform A; A 99.8 1.7E-18 5.8E-23 170.6 18.6 235 123-413 20-276 (297)
33 2zan_A Vacuolar protein sortin 99.8 1.3E-18 4.5E-23 180.8 18.6 208 122-367 132-358 (444)
34 3u61_B DNA polymerase accessor 99.8 5.3E-18 1.8E-22 169.3 21.6 187 124-358 26-220 (324)
35 3cf2_A TER ATPase, transitiona 99.8 1.3E-20 4.5E-25 205.7 2.8 247 124-414 477-748 (806)
36 3cf2_A TER ATPase, transitiona 99.8 1.1E-19 3.7E-24 198.4 8.1 208 122-367 202-428 (806)
37 3hu3_A Transitional endoplasmi 99.8 4.3E-19 1.5E-23 185.7 12.3 242 122-414 202-464 (489)
38 2ce7_A Cell division protein F 99.8 5.3E-18 1.8E-22 176.0 20.1 222 122-411 14-258 (476)
39 3syl_A Protein CBBX; photosynt 99.8 1.7E-18 5.9E-23 171.5 15.4 210 125-364 32-265 (309)
40 2chq_A Replication factor C sm 99.8 1.2E-17 4E-22 166.0 21.0 199 117-358 7-208 (319)
41 1l8q_A Chromosomal replication 99.8 1.6E-17 5.5E-22 165.8 20.6 231 116-413 3-244 (324)
42 1sxj_C Activator 1 40 kDa subu 99.8 1.1E-17 3.8E-22 168.1 18.6 192 124-358 25-216 (340)
43 1iqp_A RFCS; clamp loader, ext 99.8 1.4E-17 5E-22 165.9 18.7 192 124-358 25-216 (327)
44 1sxj_A Activator 1 95 kDa subu 99.8 8.5E-18 2.9E-22 178.2 17.8 205 119-358 31-256 (516)
45 1njg_A DNA polymerase III subu 99.7 4.3E-17 1.5E-21 154.6 19.2 207 124-358 23-232 (250)
46 3bos_A Putative DNA replicatio 99.7 3.4E-18 1.2E-22 162.6 11.3 198 137-407 40-241 (242)
47 1d2n_A N-ethylmaleimide-sensit 99.7 1.2E-17 4.2E-22 162.4 13.2 199 121-360 30-248 (272)
48 2z4s_A Chromosomal replication 99.7 1.7E-17 5.8E-22 172.2 13.6 233 115-410 96-333 (440)
49 2r44_A Uncharacterized protein 99.7 2.2E-16 7.5E-21 158.0 21.1 227 124-413 27-301 (331)
50 1jr3_A DNA polymerase III subu 99.7 1.2E-16 4.2E-21 162.3 19.2 205 124-359 16-226 (373)
51 2r62_A Cell division protease 99.7 4.9E-20 1.7E-24 178.9 -6.8 226 121-413 8-257 (268)
52 2dhr_A FTSH; AAA+ protein, hex 99.7 5.9E-17 2E-21 169.2 15.5 223 121-411 28-273 (499)
53 4fcw_A Chaperone protein CLPB; 99.7 1.2E-16 4E-21 158.4 13.2 223 124-366 17-283 (311)
54 1ixz_A ATP-dependent metallopr 99.7 5E-16 1.7E-20 149.4 16.6 219 120-406 12-253 (254)
55 1a5t_A Delta prime, HOLB; zinc 99.7 4.8E-15 1.7E-19 148.4 23.0 189 127-358 5-209 (334)
56 1iy2_A ATP-dependent metallopr 99.7 7.2E-16 2.5E-20 150.3 15.2 218 121-406 37-277 (278)
57 2x8a_A Nuclear valosin-contain 99.7 1.7E-15 6E-20 147.0 17.1 212 148-413 43-268 (274)
58 1sxj_E Activator 1 40 kDa subu 99.6 2.6E-15 8.9E-20 151.5 17.9 213 117-360 4-243 (354)
59 1um8_A ATP-dependent CLP prote 99.6 1.2E-15 4.2E-20 155.3 14.7 212 125-364 22-342 (376)
60 2qen_A Walker-type ATPase; unk 99.6 1.5E-13 5.2E-18 137.9 26.8 287 121-485 9-333 (350)
61 1g8p_A Magnesium-chelatase 38 99.6 4.7E-15 1.6E-19 149.3 15.2 143 240-414 145-327 (350)
62 1qvr_A CLPB protein; coiled co 99.6 1.1E-14 3.8E-19 163.4 19.3 211 123-363 169-394 (854)
63 3m6a_A ATP-dependent protease 99.6 7.1E-15 2.4E-19 156.3 16.3 208 125-362 82-316 (543)
64 3pxg_A Negative regulator of g 99.6 6.3E-15 2.2E-19 154.1 15.2 200 124-363 180-387 (468)
65 1jbk_A CLPB protein; beta barr 99.6 1.2E-15 4E-20 139.3 8.2 164 123-316 21-194 (195)
66 1r6b_X CLPA protein; AAA+, N-t 99.6 1.7E-14 5.8E-19 160.2 17.7 238 123-411 185-435 (758)
67 2bjv_A PSP operon transcriptio 99.6 1.6E-15 5.5E-20 146.8 8.3 215 122-361 4-240 (265)
68 2fna_A Conserved hypothetical 99.6 4.9E-13 1.7E-17 134.4 26.5 288 121-485 10-341 (357)
69 1ojl_A Transcriptional regulat 99.6 2.3E-15 7.9E-20 148.5 8.0 213 124-361 2-235 (304)
70 1r6b_X CLPA protein; AAA+, N-t 99.6 7.9E-15 2.7E-19 162.9 12.3 216 124-362 458-716 (758)
71 3t15_A Ribulose bisphosphate c 99.6 1.2E-14 4E-19 142.7 11.1 161 148-348 35-221 (293)
72 3hws_A ATP-dependent CLP prote 99.6 1.2E-14 4.2E-19 147.2 11.6 211 125-363 16-324 (363)
73 3pxi_A Negative regulator of g 99.5 2.9E-14 1E-18 158.1 11.3 208 124-365 491-728 (758)
74 1qvr_A CLPB protein; coiled co 99.5 4.2E-14 1.5E-18 158.6 11.6 223 124-366 558-824 (854)
75 1g41_A Heat shock protein HSLU 99.5 5.8E-13 2E-17 136.3 17.8 145 240-412 251-436 (444)
76 2gno_A DNA polymerase III, gam 99.5 5E-13 1.7E-17 131.4 16.6 170 137-358 6-177 (305)
77 1ypw_A Transitional endoplasmi 99.5 7.4E-17 2.5E-21 179.0 -13.6 204 123-366 476-703 (806)
78 3pxi_A Negative regulator of g 99.5 2.6E-13 8.8E-18 150.5 14.4 199 124-362 180-386 (758)
79 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 2.2E-13 7.7E-18 142.3 12.7 213 124-367 22-272 (500)
80 2p65_A Hypothetical protein PF 99.4 1E-13 3.5E-18 125.8 7.5 156 123-308 21-187 (187)
81 1ypw_A Transitional endoplasmi 99.3 1.3E-12 4.4E-17 145.1 10.0 201 122-364 202-425 (806)
82 3n70_A Transport activator; si 99.3 3.6E-13 1.2E-17 117.7 2.0 138 125-307 2-144 (145)
83 3f9v_A Minichromosome maintena 99.3 1.2E-13 4.1E-18 148.1 -1.7 140 241-410 393-588 (595)
84 3k1j_A LON protease, ATP-depen 99.3 4.9E-11 1.7E-15 128.6 15.7 138 241-408 203-374 (604)
85 3co5_A Putative two-component 99.3 2.9E-12 9.8E-17 111.7 4.6 136 125-307 5-142 (143)
86 1jr3_D DNA polymerase III, del 99.2 7.4E-10 2.5E-14 111.0 17.0 172 147-360 16-191 (343)
87 1ny5_A Transcriptional regulat 99.0 1.8E-09 6E-14 110.0 10.3 212 124-361 137-370 (387)
88 1z6t_A APAF-1, apoptotic prote 98.9 1.7E-07 5.7E-12 100.8 26.0 306 122-495 122-437 (591)
89 3dzd_A Transcriptional regulat 98.9 2.2E-09 7.4E-14 108.4 8.2 211 124-360 129-360 (368)
90 4akg_A Glutathione S-transfera 98.9 7.5E-09 2.6E-13 125.9 13.1 164 133-322 1253-1433(2695)
91 3sfz_A APAF-1, apoptotic pepti 98.8 5.1E-07 1.8E-11 105.3 26.5 308 123-495 123-437 (1249)
92 2kjq_A DNAA-related protein; s 98.8 2.6E-09 8.9E-14 93.4 3.5 103 148-295 35-138 (149)
93 2a5y_B CED-4; apoptosis; HET: 98.8 1.9E-07 6.5E-12 99.5 18.1 196 127-354 131-336 (549)
94 2w58_A DNAI, primosome compone 98.8 1.7E-08 5.7E-13 92.9 8.5 118 133-281 38-158 (202)
95 3f8t_A Predicted ATPase involv 98.7 6.1E-09 2.1E-13 105.9 4.5 223 126-411 215-485 (506)
96 3ec2_A DNA replication protein 98.7 1.3E-08 4.5E-13 91.8 5.8 122 130-282 20-143 (180)
97 4akg_A Glutathione S-transfera 98.4 1.1E-05 3.6E-10 98.8 20.7 143 134-319 632-792 (2695)
98 3vkg_A Dynein heavy chain, cyt 98.4 1.1E-06 3.8E-11 107.8 11.8 163 135-322 1292-1471(3245)
99 2qgz_A Helicase loader, putati 98.4 2.4E-07 8.3E-12 91.0 5.0 54 132-193 136-190 (308)
100 1tue_A Replication protein E1; 98.3 3.8E-07 1.3E-11 82.7 5.3 37 138-174 46-83 (212)
101 1u0j_A DNA replication protein 98.3 3.2E-06 1.1E-10 80.2 10.3 134 135-318 88-249 (267)
102 1vt4_I APAF-1 related killer D 98.2 3.4E-05 1.2E-09 85.9 17.0 169 125-320 129-311 (1221)
103 2r2a_A Uncharacterized protein 98.1 2.3E-06 7.9E-11 78.2 4.3 140 150-306 6-152 (199)
104 3upu_A ATP-dependent DNA helic 98.0 1.8E-05 6.3E-10 82.1 11.4 60 115-175 12-71 (459)
105 3vkg_A Dynein heavy chain, cyt 97.8 0.0019 6.4E-08 80.0 24.7 126 151-318 606-751 (3245)
106 2b8t_A Thymidine kinase; deoxy 97.8 1.1E-05 3.9E-10 74.8 3.9 93 148-253 11-103 (223)
107 2vhj_A Ntpase P4, P4; non- hyd 97.8 2.8E-05 9.5E-10 75.7 6.5 24 149-172 123-146 (331)
108 1ye8_A Protein THEP1, hypothet 97.6 0.00027 9.1E-09 63.2 9.6 24 151-174 2-25 (178)
109 3e1s_A Exodeoxyribonuclease V, 97.6 0.00032 1.1E-08 74.6 11.7 104 149-277 204-313 (574)
110 2orw_A Thymidine kinase; TMTK, 97.5 0.00014 4.7E-09 65.5 6.2 26 149-174 3-28 (184)
111 2cvh_A DNA repair and recombin 97.4 0.00091 3.1E-08 61.4 11.3 45 148-202 19-63 (220)
112 2w0m_A SSO2452; RECA, SSPF, un 97.4 0.00043 1.5E-08 64.1 8.9 40 148-194 22-61 (235)
113 3cmu_A Protein RECA, recombina 97.4 0.00023 7.7E-09 84.6 8.0 91 148-253 1426-1519(2050)
114 1w36_D RECD, exodeoxyribonucle 97.4 0.00082 2.8E-08 72.1 11.7 27 149-175 164-190 (608)
115 3cmw_A Protein RECA, recombina 97.3 0.00019 6.3E-09 84.3 5.5 91 149-254 1082-1175(1706)
116 2r8r_A Sensor protein; KDPD, P 97.2 0.0015 5E-08 60.3 10.1 145 150-315 7-172 (228)
117 3hr8_A Protein RECA; alpha and 97.1 0.00088 3E-08 66.6 8.2 90 149-253 61-153 (356)
118 3kl4_A SRP54, signal recogniti 97.1 0.0032 1.1E-07 64.2 12.2 131 112-252 51-192 (433)
119 1xp8_A RECA protein, recombina 97.1 0.0018 6.3E-08 64.6 10.3 91 148-253 73-166 (366)
120 1n0w_A DNA repair protein RAD5 97.1 0.002 6.8E-08 60.1 10.1 102 148-254 23-134 (243)
121 3dm5_A SRP54, signal recogniti 97.0 0.0048 1.6E-07 62.9 12.4 122 121-252 64-195 (443)
122 1g5t_A COB(I)alamin adenosyltr 97.0 0.0018 6.3E-08 58.3 7.8 124 148-281 27-162 (196)
123 2dr3_A UPF0273 protein PH0284; 96.9 0.0026 9E-08 59.4 9.2 48 148-204 22-69 (247)
124 2zr9_A Protein RECA, recombina 96.9 0.0015 5.3E-08 64.8 7.8 90 148-252 60-152 (349)
125 2fz4_A DNA repair protein RAD2 96.9 0.0017 5.8E-08 60.8 7.0 41 126-173 92-132 (237)
126 3io5_A Recombination and repai 96.8 0.0046 1.6E-07 59.9 9.8 93 150-253 29-125 (333)
127 2iut_A DNA translocase FTSK; n 96.8 0.0087 3E-07 62.8 12.7 74 239-317 343-420 (574)
128 2ga8_A Hypothetical 39.9 kDa p 96.8 0.0016 5.5E-08 64.2 6.6 47 129-175 4-50 (359)
129 3kw6_A 26S protease regulatory 96.8 0.00078 2.7E-08 51.2 3.4 74 305-411 1-75 (78)
130 3lda_A DNA repair protein RAD5 96.7 0.0052 1.8E-07 62.1 10.0 100 149-253 178-287 (400)
131 1w4r_A Thymidine kinase; type 96.7 0.00057 2E-08 61.5 2.1 38 148-193 19-57 (195)
132 3llm_A ATP-dependent RNA helic 96.7 0.0026 9E-08 59.3 6.9 23 149-171 76-98 (235)
133 4a74_A DNA repair and recombin 96.7 0.0058 2E-07 56.3 9.1 49 149-198 25-73 (231)
134 1u94_A RECA protein, recombina 96.6 0.0061 2.1E-07 60.6 9.3 92 148-253 62-155 (356)
135 2krk_A 26S protease regulatory 96.6 0.00083 2.8E-08 52.1 2.3 76 303-411 7-83 (86)
136 2z43_A DNA repair and recombin 96.6 0.0066 2.3E-07 59.6 9.5 99 148-253 106-217 (324)
137 2r6a_A DNAB helicase, replicat 96.6 0.011 3.7E-07 61.0 11.2 49 149-205 203-251 (454)
138 1qhx_A CPT, protein (chloramph 96.5 0.0012 4.1E-08 58.5 3.3 26 149-174 3-28 (178)
139 3cmu_A Protein RECA, recombina 96.5 0.0025 8.7E-08 75.8 6.8 92 148-253 731-824 (2050)
140 3trf_A Shikimate kinase, SK; a 96.5 0.0017 5.9E-08 57.9 4.0 26 149-174 5-30 (185)
141 1gvn_B Zeta; postsegregational 96.5 0.0014 4.9E-08 63.2 3.6 25 149-173 33-57 (287)
142 3vaa_A Shikimate kinase, SK; s 96.4 0.002 6.7E-08 58.5 4.2 27 148-174 24-50 (199)
143 2j9r_A Thymidine kinase; TK1, 96.4 0.0099 3.4E-07 54.2 8.8 27 149-175 28-54 (214)
144 4eun_A Thermoresistant glucoki 96.4 0.002 6.8E-08 58.5 4.2 28 146-173 26-53 (200)
145 1v5w_A DMC1, meiotic recombina 96.4 0.0058 2E-07 60.5 7.7 99 149-253 122-233 (343)
146 3bh0_A DNAB-like replicative h 96.4 0.021 7.3E-07 55.7 11.6 52 148-208 67-118 (315)
147 3vkw_A Replicase large subunit 96.4 0.0083 2.8E-07 61.0 8.8 121 135-277 142-267 (446)
148 3kb2_A SPBC2 prophage-derived 96.3 0.0022 7.4E-08 56.3 3.7 24 151-174 3-26 (173)
149 3iij_A Coilin-interacting nucl 96.3 0.0025 8.4E-08 56.7 4.0 26 148-173 10-35 (180)
150 1kht_A Adenylate kinase; phosp 96.3 0.0026 8.9E-08 56.8 4.2 26 149-174 3-28 (192)
151 2j37_W Signal recognition part 96.3 0.051 1.8E-06 56.4 14.5 130 113-252 56-196 (504)
152 1pzn_A RAD51, DNA repair and r 96.3 0.0094 3.2E-07 59.2 8.5 51 148-199 130-180 (349)
153 2v3c_C SRP54, signal recogniti 96.3 0.04 1.4E-06 56.2 13.2 40 149-195 99-138 (432)
154 1rz3_A Hypothetical protein rb 96.3 0.0045 1.5E-07 56.2 5.5 47 128-175 2-48 (201)
155 2q6t_A DNAB replication FORK h 96.3 0.015 5.1E-07 59.8 10.1 51 149-207 200-250 (444)
156 1sky_E F1-ATPase, F1-ATP synth 96.2 0.013 4.5E-07 60.0 9.1 96 148-253 150-259 (473)
157 1xx6_A Thymidine kinase; NESG, 96.2 0.0015 5E-08 59.0 1.8 26 149-174 8-33 (191)
158 1kag_A SKI, shikimate kinase I 96.2 0.0023 7.8E-08 56.4 3.0 25 149-173 4-28 (173)
159 1via_A Shikimate kinase; struc 96.2 0.0025 8.6E-08 56.3 3.3 25 150-174 5-29 (175)
160 1nks_A Adenylate kinase; therm 96.2 0.0029 1E-07 56.6 3.7 24 151-174 3-26 (194)
161 3b6e_A Interferon-induced heli 96.2 0.0041 1.4E-07 56.7 4.7 42 127-175 33-74 (216)
162 3uie_A Adenylyl-sulfate kinase 96.2 0.0039 1.3E-07 56.5 4.5 28 147-174 23-50 (200)
163 2rhm_A Putative kinase; P-loop 96.2 0.003 1E-07 56.6 3.6 25 149-173 5-29 (193)
164 1zuh_A Shikimate kinase; alpha 96.1 0.0032 1.1E-07 55.3 3.5 27 148-174 6-32 (168)
165 2iyv_A Shikimate kinase, SK; t 96.1 0.0031 1.1E-07 56.2 3.5 25 150-174 3-27 (184)
166 2i1q_A DNA repair and recombin 96.1 0.018 6.1E-07 56.3 9.2 103 149-253 98-218 (322)
167 1ly1_A Polynucleotide kinase; 96.1 0.003 1E-07 55.8 3.3 22 150-171 3-24 (181)
168 2yvu_A Probable adenylyl-sulfa 96.1 0.0042 1.4E-07 55.5 4.1 29 147-175 11-39 (186)
169 2p5t_B PEZT; postsegregational 96.0 0.0049 1.7E-07 58.2 4.6 26 149-174 32-57 (253)
170 1y63_A LMAJ004144AAA protein; 96.0 0.0045 1.5E-07 55.3 4.1 25 148-172 9-33 (184)
171 1vma_A Cell division protein F 96.0 0.013 4.3E-07 57.0 7.5 93 149-251 104-198 (306)
172 2cdn_A Adenylate kinase; phosp 96.0 0.005 1.7E-07 55.8 4.3 26 149-174 20-45 (201)
173 1aky_A Adenylate kinase; ATP:A 96.0 0.0047 1.6E-07 56.8 4.2 27 148-174 3-29 (220)
174 2c95_A Adenylate kinase 1; tra 96.0 0.0046 1.6E-07 55.5 4.0 27 148-174 8-34 (196)
175 3vlf_B 26S protease regulatory 96.0 0.0031 1E-07 49.1 2.4 73 308-413 2-75 (88)
176 3t61_A Gluconokinase; PSI-biol 96.0 0.0044 1.5E-07 56.2 3.8 25 149-173 18-42 (202)
177 3c8u_A Fructokinase; YP_612366 96.0 0.0049 1.7E-07 56.2 4.1 28 147-174 20-47 (208)
178 3umf_A Adenylate kinase; rossm 95.9 0.0048 1.6E-07 56.8 3.9 26 148-173 28-53 (217)
179 3cm0_A Adenylate kinase; ATP-b 95.9 0.0035 1.2E-07 55.9 3.0 26 149-174 4-29 (186)
180 3lw7_A Adenylate kinase relate 95.9 0.0033 1.1E-07 55.1 2.7 22 150-172 2-23 (179)
181 1zp6_A Hypothetical protein AT 95.9 0.0038 1.3E-07 55.9 3.2 25 148-172 8-32 (191)
182 3sr0_A Adenylate kinase; phosp 95.9 0.0047 1.6E-07 56.4 3.6 23 151-173 2-24 (206)
183 2ius_A DNA translocase FTSK; n 95.9 0.056 1.9E-06 56.1 12.1 74 240-318 298-375 (512)
184 3e70_C DPA, signal recognition 95.9 0.046 1.6E-06 53.6 11.0 28 148-175 128-155 (328)
185 2qor_A Guanylate kinase; phosp 95.9 0.0042 1.4E-07 56.5 3.3 26 148-173 11-36 (204)
186 1knq_A Gluconate kinase; ALFA/ 95.9 0.0054 1.8E-07 54.1 3.9 25 149-173 8-32 (175)
187 2bwj_A Adenylate kinase 5; pho 95.9 0.0045 1.5E-07 55.7 3.4 26 149-174 12-37 (199)
188 1e6c_A Shikimate kinase; phosp 95.9 0.0049 1.7E-07 54.1 3.6 25 150-174 3-27 (173)
189 1tev_A UMP-CMP kinase; ploop, 95.9 0.0049 1.7E-07 55.1 3.7 25 149-173 3-27 (196)
190 3tlx_A Adenylate kinase 2; str 95.8 0.012 3.9E-07 55.3 6.3 26 148-173 28-53 (243)
191 4b3f_X DNA-binding protein smu 95.8 0.0077 2.6E-07 65.1 5.7 27 149-175 205-231 (646)
192 2plr_A DTMP kinase, probable t 95.8 0.0053 1.8E-07 55.8 3.8 26 149-174 4-29 (213)
193 2wwf_A Thymidilate kinase, put 95.8 0.0057 1.9E-07 55.7 4.0 27 149-175 10-36 (212)
194 3ice_A Transcription terminati 95.8 0.035 1.2E-06 55.2 9.8 97 144-253 169-275 (422)
195 1zak_A Adenylate kinase; ATP:A 95.8 0.0053 1.8E-07 56.5 3.9 27 148-174 4-30 (222)
196 1nn5_A Similar to deoxythymidy 95.8 0.0064 2.2E-07 55.4 4.2 28 148-175 8-35 (215)
197 1j8m_F SRP54, signal recogniti 95.8 0.075 2.6E-06 51.3 11.9 94 149-252 98-193 (297)
198 3fb4_A Adenylate kinase; psych 95.8 0.0057 1.9E-07 56.0 3.7 23 151-173 2-24 (216)
199 2vli_A Antibiotic resistance p 95.7 0.0031 1.1E-07 56.0 1.9 26 149-174 5-30 (183)
200 1ex7_A Guanylate kinase; subst 95.7 0.0061 2.1E-07 54.6 3.7 24 150-173 2-25 (186)
201 3fe2_A Probable ATP-dependent 95.7 0.059 2E-06 50.1 10.8 19 150-168 67-85 (242)
202 1ak2_A Adenylate kinase isoenz 95.7 0.0074 2.5E-07 56.1 4.3 27 148-174 15-41 (233)
203 2ze6_A Isopentenyl transferase 95.7 0.0058 2E-07 57.8 3.6 24 151-174 3-26 (253)
204 1kgd_A CASK, peripheral plasma 95.7 0.0073 2.5E-07 53.7 4.0 25 149-173 5-29 (180)
205 3a4m_A L-seryl-tRNA(SEC) kinas 95.7 0.0071 2.4E-07 57.3 4.2 27 149-175 4-30 (260)
206 2pt5_A Shikimate kinase, SK; a 95.6 0.0063 2.2E-07 53.1 3.4 24 151-174 2-25 (168)
207 3dl0_A Adenylate kinase; phosp 95.6 0.0053 1.8E-07 56.2 3.0 23 151-173 2-24 (216)
208 2z0h_A DTMP kinase, thymidylat 95.6 0.015 5E-07 52.2 5.9 25 151-175 2-26 (197)
209 2pbr_A DTMP kinase, thymidylat 95.6 0.017 5.8E-07 51.5 6.3 25 151-175 2-26 (195)
210 3tau_A Guanylate kinase, GMP k 95.6 0.0078 2.7E-07 54.9 4.0 26 148-173 7-32 (208)
211 1qf9_A UMP/CMP kinase, protein 95.6 0.0064 2.2E-07 54.3 3.4 25 149-173 6-30 (194)
212 2jaq_A Deoxyguanosine kinase; 95.6 0.0073 2.5E-07 54.5 3.8 24 151-174 2-25 (205)
213 1zd8_A GTP:AMP phosphotransfer 95.6 0.0058 2E-07 56.5 3.1 26 148-173 6-31 (227)
214 2xau_A PRE-mRNA-splicing facto 95.6 0.034 1.2E-06 61.2 9.6 23 149-171 109-131 (773)
215 3be4_A Adenylate kinase; malar 95.5 0.0073 2.5E-07 55.5 3.5 26 149-174 5-30 (217)
216 2bbw_A Adenylate kinase 4, AK4 95.5 0.0086 2.9E-07 56.2 4.0 27 148-174 26-52 (246)
217 2pl3_A Probable ATP-dependent 95.5 0.039 1.3E-06 51.0 8.6 20 149-168 62-81 (236)
218 2xxa_A Signal recognition part 95.5 0.081 2.8E-06 53.9 11.5 94 149-251 100-195 (433)
219 1ukz_A Uridylate kinase; trans 95.5 0.0069 2.4E-07 54.8 3.2 26 148-173 14-39 (203)
220 3lxw_A GTPase IMAP family memb 95.5 0.031 1.1E-06 52.4 7.8 23 149-171 21-43 (247)
221 1odf_A YGR205W, hypothetical 3 95.4 0.021 7.1E-07 55.1 6.5 44 133-176 13-58 (290)
222 3tr0_A Guanylate kinase, GMP k 95.4 0.011 3.7E-07 53.5 4.2 26 148-173 6-31 (205)
223 1vec_A ATP-dependent RNA helic 95.4 0.061 2.1E-06 48.4 9.3 18 150-167 41-58 (206)
224 1svm_A Large T antigen; AAA+ f 95.4 0.02 6.9E-07 57.3 6.4 27 147-173 167-193 (377)
225 2orv_A Thymidine kinase; TP4A 95.4 0.0096 3.3E-07 54.9 3.7 25 149-173 19-43 (234)
226 3ney_A 55 kDa erythrocyte memb 95.4 0.012 4E-07 53.3 4.2 26 148-173 18-43 (197)
227 2gxq_A Heat resistant RNA depe 95.4 0.018 6.1E-07 52.0 5.5 20 149-168 38-57 (207)
228 2j41_A Guanylate kinase; GMP, 95.3 0.011 3.6E-07 53.6 3.9 26 148-173 5-30 (207)
229 1e4v_A Adenylate kinase; trans 95.3 0.009 3.1E-07 54.7 3.5 23 151-173 2-24 (214)
230 4a1f_A DNAB helicase, replicat 95.3 0.04 1.4E-06 54.1 8.3 51 148-207 45-95 (338)
231 1m7g_A Adenylylsulfate kinase; 95.3 0.013 4.3E-07 53.6 4.4 27 148-174 24-50 (211)
232 3iuy_A Probable ATP-dependent 95.3 0.029 1E-06 51.6 7.0 20 149-168 57-76 (228)
233 3aji_B S6C, proteasome (prosom 95.3 0.0034 1.2E-07 48.2 0.4 75 307-414 1-76 (83)
234 2pez_A Bifunctional 3'-phospho 95.3 0.011 3.7E-07 52.4 3.8 27 148-174 4-30 (179)
235 3bgw_A DNAB-like replicative h 95.3 0.084 2.9E-06 54.0 11.0 39 149-194 197-235 (444)
236 3fmo_B ATP-dependent RNA helic 95.3 0.082 2.8E-06 51.1 10.4 20 147-166 129-148 (300)
237 2v54_A DTMP kinase, thymidylat 95.3 0.008 2.7E-07 54.3 3.0 25 149-173 4-28 (204)
238 3dkp_A Probable ATP-dependent 95.3 0.094 3.2E-06 48.7 10.4 18 150-167 67-84 (245)
239 2xb4_A Adenylate kinase; ATP-b 95.2 0.011 3.8E-07 54.5 3.8 23 151-173 2-24 (223)
240 1cke_A CK, MSSA, protein (cyti 95.2 0.012 4.1E-07 54.1 4.0 25 150-174 6-30 (227)
241 3a00_A Guanylate kinase, GMP k 95.2 0.0092 3.1E-07 53.3 3.0 25 150-174 2-26 (186)
242 1lvg_A Guanylate kinase, GMP k 95.2 0.012 4E-07 53.3 3.7 25 149-173 4-28 (198)
243 2bdt_A BH3686; alpha-beta prot 95.2 0.011 3.7E-07 52.8 3.4 21 151-171 4-24 (189)
244 1qde_A EIF4A, translation init 95.1 0.028 9.5E-07 51.5 6.1 16 150-165 52-67 (224)
245 3crm_A TRNA delta(2)-isopenten 95.1 0.013 4.6E-07 57.1 3.9 24 150-173 6-29 (323)
246 1q57_A DNA primase/helicase; d 95.1 0.044 1.5E-06 57.1 8.2 50 149-206 242-291 (503)
247 1wrb_A DJVLGB; RNA helicase, D 95.1 0.38 1.3E-05 44.7 14.0 19 150-168 61-79 (253)
248 3nwj_A ATSK2; P loop, shikimat 95.0 0.014 4.6E-07 55.0 3.6 26 149-174 48-73 (250)
249 2oxc_A Probable ATP-dependent 95.0 0.039 1.3E-06 50.9 6.7 18 149-166 61-78 (230)
250 3ly5_A ATP-dependent RNA helic 95.0 0.031 1E-06 52.9 6.0 19 150-168 92-110 (262)
251 3ber_A Probable ATP-dependent 94.9 0.12 4.1E-06 48.3 10.1 20 149-168 80-99 (249)
252 3r20_A Cytidylate kinase; stru 94.9 0.015 5.3E-07 53.9 3.7 26 149-174 9-34 (233)
253 3cmw_A Protein RECA, recombina 94.9 0.04 1.4E-06 65.0 7.8 91 149-254 1431-1524(1706)
254 3bor_A Human initiation factor 94.9 0.038 1.3E-06 51.3 6.4 18 150-167 68-85 (237)
255 1p6r_A Penicillinase repressor 94.9 0.1 3.5E-06 39.5 7.8 74 418-502 4-77 (82)
256 1ls1_A Signal recognition part 94.8 0.052 1.8E-06 52.4 7.4 94 149-253 98-194 (295)
257 2wsm_A Hydrogenase expression/ 94.8 0.026 8.9E-07 51.5 4.9 28 147-174 28-55 (221)
258 3zvl_A Bifunctional polynucleo 94.8 0.017 5.8E-07 58.8 3.9 25 149-173 258-282 (416)
259 3e2i_A Thymidine kinase; Zn-bi 94.8 0.0099 3.4E-07 54.2 1.9 112 148-280 27-138 (219)
260 2hf9_A Probable hydrogenase ni 94.8 0.033 1.1E-06 51.0 5.6 28 147-174 36-63 (226)
261 3fht_A ATP-dependent RNA helic 94.8 0.13 4.6E-06 51.4 10.6 20 148-167 63-82 (412)
262 1xjc_A MOBB protein homolog; s 94.8 0.025 8.5E-07 49.7 4.4 27 149-175 4-30 (169)
263 1s96_A Guanylate kinase, GMP k 94.7 0.021 7.1E-07 52.6 4.0 26 148-173 15-40 (219)
264 2i3b_A HCR-ntpase, human cance 94.7 0.023 7.9E-07 51.0 4.1 25 150-174 2-26 (189)
265 2ffh_A Protein (FFH); SRP54, s 94.7 0.16 5.3E-06 51.6 10.6 92 149-251 98-192 (425)
266 2gk6_A Regulator of nonsense t 94.6 0.03 1E-06 60.1 5.6 26 149-174 195-220 (624)
267 2eyu_A Twitching motility prot 94.6 0.022 7.6E-07 54.0 4.0 29 147-175 23-51 (261)
268 3ake_A Cytidylate kinase; CMP 94.6 0.02 6.9E-07 51.7 3.7 24 151-174 4-27 (208)
269 4e22_A Cytidylate kinase; P-lo 94.6 0.018 6.1E-07 54.3 3.4 27 148-174 26-52 (252)
270 1rif_A DAR protein, DNA helica 94.6 0.1 3.5E-06 49.7 8.8 42 126-174 112-153 (282)
271 2if2_A Dephospho-COA kinase; a 94.6 0.018 6.1E-07 52.1 3.2 21 151-171 3-23 (204)
272 1q0u_A Bstdead; DEAD protein, 94.6 0.1 3.4E-06 47.6 8.4 19 150-168 42-60 (219)
273 1gtv_A TMK, thymidylate kinase 94.6 0.01 3.5E-07 54.0 1.6 24 151-174 2-25 (214)
274 1htw_A HI0065; nucleotide-bind 94.6 0.02 6.7E-07 49.8 3.3 26 148-173 32-57 (158)
275 4gp7_A Metallophosphoesterase; 94.5 0.016 5.5E-07 51.0 2.7 21 148-168 8-28 (171)
276 2ehv_A Hypothetical protein PH 94.5 0.021 7E-07 53.3 3.6 25 148-172 29-53 (251)
277 1z6g_A Guanylate kinase; struc 94.5 0.021 7.3E-07 52.4 3.7 26 148-173 22-47 (218)
278 1t6n_A Probable ATP-dependent 94.5 0.26 8.7E-06 44.8 11.1 22 150-171 52-73 (220)
279 3asz_A Uridine kinase; cytidin 94.5 0.021 7.1E-07 51.9 3.5 27 148-174 5-31 (211)
280 1znw_A Guanylate kinase, GMP k 94.5 0.02 6.9E-07 52.0 3.4 26 148-173 19-44 (207)
281 3tqc_A Pantothenate kinase; bi 94.5 0.032 1.1E-06 54.5 4.9 26 149-174 92-117 (321)
282 1hv8_A Putative ATP-dependent 94.5 0.069 2.4E-06 52.5 7.6 24 149-172 44-67 (367)
283 1uf9_A TT1252 protein; P-loop, 94.5 0.021 7.1E-07 51.4 3.4 25 148-172 7-31 (203)
284 4eaq_A DTMP kinase, thymidylat 94.5 0.025 8.5E-07 52.4 4.0 27 148-174 25-51 (229)
285 2fwr_A DNA repair protein RAD2 94.5 0.088 3E-06 54.2 8.6 41 126-173 92-132 (472)
286 2zts_A Putative uncharacterize 94.5 0.045 1.5E-06 50.8 5.8 49 148-204 29-77 (251)
287 1uj2_A Uridine-cytidine kinase 94.5 0.018 6E-07 54.2 2.9 27 148-174 21-47 (252)
288 2va8_A SSO2462, SKI2-type heli 94.4 0.09 3.1E-06 57.3 8.9 22 149-170 46-67 (715)
289 1jjv_A Dephospho-COA kinase; P 94.4 0.021 7.3E-07 51.7 3.2 21 151-171 4-24 (206)
290 3foz_A TRNA delta(2)-isopenten 94.3 0.022 7.5E-07 55.0 3.3 25 149-173 10-34 (316)
291 1tf7_A KAIC; homohexamer, hexa 94.3 0.05 1.7E-06 57.1 6.4 120 148-282 280-417 (525)
292 3jvv_A Twitching mobility prot 94.3 0.027 9.1E-07 55.9 4.0 28 148-175 122-149 (356)
293 2j0s_A ATP-dependent RNA helic 94.3 0.3 1E-05 48.9 12.0 20 150-169 75-94 (410)
294 2v6i_A RNA helicase; membrane, 94.3 0.06 2E-06 55.0 6.7 25 149-173 2-27 (431)
295 1p9r_A General secretion pathw 94.3 0.036 1.2E-06 56.2 5.0 28 147-174 165-192 (418)
296 2zj8_A DNA helicase, putative 94.3 0.14 4.9E-06 55.8 10.1 122 149-282 39-179 (720)
297 3aez_A Pantothenate kinase; tr 94.2 0.064 2.2E-06 52.1 6.4 28 148-175 89-116 (312)
298 1np6_A Molybdopterin-guanine d 94.2 0.036 1.2E-06 48.9 4.2 27 149-175 6-32 (174)
299 1g8f_A Sulfate adenylyltransfe 94.2 0.037 1.3E-06 57.5 4.9 58 115-174 363-420 (511)
300 2qt1_A Nicotinamide riboside k 94.2 0.022 7.5E-07 51.7 2.8 25 149-173 21-45 (207)
301 3v9p_A DTMP kinase, thymidylat 94.2 0.08 2.7E-06 48.9 6.6 29 148-176 24-52 (227)
302 2v9p_A Replication protein E1; 94.2 0.033 1.1E-06 53.9 4.2 27 147-173 124-150 (305)
303 1ltq_A Polynucleotide kinase; 94.1 0.026 8.8E-07 54.5 3.3 23 150-172 3-25 (301)
304 3cr8_A Sulfate adenylyltranfer 94.1 0.046 1.6E-06 57.5 5.5 59 114-174 336-394 (552)
305 1rj9_A FTSY, signal recognitio 94.1 0.038 1.3E-06 53.6 4.4 28 148-175 101-128 (304)
306 2ged_A SR-beta, signal recogni 94.0 0.063 2.1E-06 47.6 5.6 25 148-172 47-71 (193)
307 3b9q_A Chloroplast SRP recepto 94.0 0.084 2.9E-06 51.1 6.8 27 149-175 100-126 (302)
308 3lnc_A Guanylate kinase, GMP k 94.0 0.022 7.4E-07 52.7 2.5 26 148-173 26-52 (231)
309 2wjy_A Regulator of nonsense t 94.0 0.048 1.6E-06 60.1 5.6 26 149-174 371-396 (800)
310 1nlf_A Regulatory protein REPA 94.0 0.036 1.2E-06 52.9 4.1 27 148-174 29-55 (279)
311 2xgj_A ATP-dependent RNA helic 93.9 0.28 9.5E-06 55.6 11.7 98 149-255 101-208 (1010)
312 1q3t_A Cytidylate kinase; nucl 93.9 0.042 1.4E-06 51.0 4.3 27 148-174 15-41 (236)
313 3pey_A ATP-dependent RNA helic 93.9 0.16 5.4E-06 50.4 8.9 23 148-170 43-65 (395)
314 1cr0_A DNA primase/helicase; R 93.9 0.039 1.3E-06 53.1 4.2 40 148-193 34-73 (296)
315 1sq5_A Pantothenate kinase; P- 93.9 0.071 2.4E-06 51.7 6.0 27 148-174 79-105 (308)
316 2grj_A Dephospho-COA kinase; T 93.9 0.037 1.3E-06 49.7 3.7 24 150-173 13-36 (192)
317 3fmp_B ATP-dependent RNA helic 93.8 0.12 4E-06 53.4 8.0 19 148-166 130-148 (479)
318 3i5x_A ATP-dependent RNA helic 93.8 0.39 1.3E-05 50.5 12.2 21 148-168 110-130 (563)
319 4edh_A DTMP kinase, thymidylat 93.8 0.077 2.6E-06 48.5 5.8 27 149-175 6-32 (213)
320 2ewv_A Twitching motility prot 93.8 0.037 1.3E-06 55.3 3.9 28 148-175 135-162 (372)
321 2z0m_A 337AA long hypothetical 93.8 0.16 5.6E-06 49.1 8.5 22 149-170 31-52 (337)
322 3a8t_A Adenylate isopentenyltr 93.8 0.023 7.8E-07 55.7 2.2 26 149-174 40-65 (339)
323 3eiq_A Eukaryotic initiation f 93.7 0.33 1.1E-05 48.6 10.8 21 149-169 77-97 (414)
324 2og2_A Putative signal recogni 93.6 0.11 3.8E-06 51.5 6.9 27 149-175 157-183 (359)
325 2jeo_A Uridine-cytidine kinase 93.6 0.044 1.5E-06 51.2 3.9 27 148-174 24-50 (245)
326 2z83_A Helicase/nucleoside tri 93.6 0.055 1.9E-06 55.7 4.9 51 148-210 20-71 (459)
327 2qmh_A HPR kinase/phosphorylas 93.6 0.031 1.1E-06 50.3 2.5 25 149-173 34-58 (205)
328 3ld9_A DTMP kinase, thymidylat 93.6 0.054 1.8E-06 49.9 4.3 31 145-175 17-47 (223)
329 1vht_A Dephospho-COA kinase; s 93.5 0.044 1.5E-06 50.0 3.6 23 149-171 4-26 (218)
330 3exa_A TRNA delta(2)-isopenten 93.5 0.033 1.1E-06 53.9 2.8 25 149-173 3-27 (322)
331 1wp9_A ATP-dependent RNA helic 93.5 0.29 1E-05 49.7 10.3 24 151-174 25-48 (494)
332 1s2m_A Putative ATP-dependent 93.5 0.18 6.3E-06 50.3 8.5 21 150-170 59-79 (400)
333 2p6r_A Afuhel308 helicase; pro 93.4 0.053 1.8E-06 59.1 4.6 22 149-170 40-61 (702)
334 2xzl_A ATP-dependent helicase 93.4 0.06 2.1E-06 59.4 5.0 27 149-175 375-401 (802)
335 2px0_A Flagellar biosynthesis 93.4 0.055 1.9E-06 52.2 4.2 102 148-264 104-206 (296)
336 1m8p_A Sulfate adenylyltransfe 93.4 0.066 2.3E-06 56.6 5.2 29 147-175 394-422 (573)
337 3eph_A TRNA isopentenyltransfe 93.3 0.054 1.8E-06 54.3 4.1 25 150-174 3-27 (409)
338 2h92_A Cytidylate kinase; ross 93.3 0.041 1.4E-06 50.2 3.0 25 149-173 3-27 (219)
339 2oap_1 GSPE-2, type II secreti 93.3 0.057 2E-06 56.3 4.4 35 138-174 251-285 (511)
340 3d3q_A TRNA delta(2)-isopenten 93.2 0.042 1.4E-06 53.9 3.0 25 150-174 8-32 (340)
341 1tq4_A IIGP1, interferon-induc 93.2 0.084 2.9E-06 53.3 5.4 37 134-172 56-92 (413)
342 1nrj_B SR-beta, signal recogni 93.2 0.06 2.1E-06 48.9 3.9 26 147-172 10-35 (218)
343 3sqw_A ATP-dependent RNA helic 93.1 0.38 1.3E-05 50.9 10.7 21 148-168 59-79 (579)
344 3tif_A Uncharacterized ABC tra 93.1 0.048 1.7E-06 50.7 3.2 26 148-173 30-55 (235)
345 2db3_A ATP-dependent RNA helic 93.1 0.6 2.1E-05 47.4 11.7 19 149-167 93-111 (434)
346 2f6r_A COA synthase, bifunctio 93.1 0.049 1.7E-06 52.1 3.2 22 149-170 75-96 (281)
347 2yhs_A FTSY, cell division pro 93.0 0.11 3.8E-06 53.4 5.9 27 149-175 293-319 (503)
348 2gza_A Type IV secretion syste 93.0 0.072 2.4E-06 53.0 4.4 35 138-174 166-200 (361)
349 3l9o_A ATP-dependent RNA helic 93.0 0.1 3.6E-06 59.6 6.3 98 148-254 198-305 (1108)
350 2dyk_A GTP-binding protein; GT 93.0 0.061 2.1E-06 45.9 3.4 23 150-172 2-24 (161)
351 1zu4_A FTSY; GTPase, signal re 92.9 0.074 2.5E-06 51.9 4.4 40 149-195 105-144 (320)
352 4tmk_A Protein (thymidylate ki 92.9 0.17 5.9E-06 46.1 6.5 27 149-175 3-29 (213)
353 2f1r_A Molybdopterin-guanine d 92.9 0.042 1.4E-06 48.4 2.3 26 150-175 3-28 (171)
354 3kta_A Chromosome segregation 92.9 0.058 2E-06 47.6 3.3 25 149-173 26-50 (182)
355 2cbz_A Multidrug resistance-as 92.9 0.055 1.9E-06 50.4 3.2 26 148-173 30-55 (237)
356 2f9l_A RAB11B, member RAS onco 92.9 0.057 1.9E-06 48.4 3.2 22 151-172 7-28 (199)
357 4a4z_A Antiviral helicase SKI2 92.9 0.23 7.8E-06 56.2 8.8 97 149-254 54-162 (997)
358 2pcj_A ABC transporter, lipopr 92.9 0.05 1.7E-06 50.2 2.9 26 148-173 29-54 (224)
359 3p32_A Probable GTPase RV1496/ 92.8 0.14 4.8E-06 50.7 6.3 28 147-174 77-104 (355)
360 2axn_A 6-phosphofructo-2-kinas 92.8 0.067 2.3E-06 55.9 4.1 26 149-174 35-60 (520)
361 3lv8_A DTMP kinase, thymidylat 92.8 0.081 2.8E-06 49.2 4.3 27 149-175 27-53 (236)
362 1oix_A RAS-related protein RAB 92.8 0.055 1.9E-06 48.2 3.0 22 151-172 31-52 (191)
363 2i4i_A ATP-dependent RNA helic 92.8 0.41 1.4E-05 47.9 10.0 25 149-173 52-77 (417)
364 1a7j_A Phosphoribulokinase; tr 92.8 0.044 1.5E-06 52.8 2.5 41 149-196 5-45 (290)
365 2ocp_A DGK, deoxyguanosine kin 92.8 0.05 1.7E-06 50.6 2.8 26 149-174 2-27 (241)
366 1gm5_A RECG; helicase, replica 92.8 0.35 1.2E-05 53.0 9.9 29 144-172 384-412 (780)
367 3sop_A Neuronal-specific septi 92.7 0.062 2.1E-06 51.1 3.4 24 151-174 4-27 (270)
368 3tbk_A RIG-I helicase domain; 92.7 0.2 6.9E-06 52.3 7.7 25 149-173 19-43 (555)
369 1z2a_A RAS-related protein RAB 92.7 0.068 2.3E-06 45.9 3.4 22 150-171 6-27 (168)
370 1b0u_A Histidine permease; ABC 92.7 0.061 2.1E-06 50.9 3.2 26 148-173 31-56 (262)
371 1kao_A RAP2A; GTP-binding prot 92.6 0.071 2.4E-06 45.6 3.4 22 150-171 4-25 (167)
372 2jlq_A Serine protease subunit 92.6 0.09 3.1E-06 54.0 4.7 50 149-210 19-69 (451)
373 3b85_A Phosphate starvation-in 92.6 0.057 2E-06 49.2 2.9 25 148-172 21-45 (208)
374 2gks_A Bifunctional SAT/APS ki 92.5 0.12 3.9E-06 54.5 5.4 28 148-175 371-398 (546)
375 3tmk_A Thymidylate kinase; pho 92.5 0.092 3.1E-06 48.1 4.1 27 148-174 4-30 (216)
376 1wms_A RAB-9, RAB9, RAS-relate 92.5 0.076 2.6E-06 46.1 3.4 22 150-171 8-29 (177)
377 2www_A Methylmalonic aciduria 92.5 0.17 5.7E-06 50.0 6.3 26 149-174 74-99 (349)
378 2zu0_C Probable ATP-dependent 92.4 0.08 2.7E-06 50.2 3.8 25 148-172 45-69 (267)
379 1sgw_A Putative ABC transporte 92.4 0.064 2.2E-06 49.1 3.0 26 148-173 34-59 (214)
380 2ce2_X GTPase HRAS; signaling 92.4 0.071 2.4E-06 45.5 3.1 22 151-172 5-26 (166)
381 1ek0_A Protein (GTP-binding pr 92.4 0.076 2.6E-06 45.6 3.4 21 151-171 5-25 (170)
382 2wji_A Ferrous iron transport 92.4 0.069 2.3E-06 46.2 3.0 22 150-171 4-25 (165)
383 2lkc_A Translation initiation 92.4 0.091 3.1E-06 45.7 3.9 24 148-171 7-30 (178)
384 1xti_A Probable ATP-dependent 92.4 0.66 2.3E-05 45.9 10.8 22 149-170 45-66 (391)
385 3tqf_A HPR(Ser) kinase; transf 92.4 0.07 2.4E-06 46.8 3.0 24 148-171 15-38 (181)
386 2nzj_A GTP-binding protein REM 92.4 0.074 2.5E-06 46.1 3.2 23 150-172 5-27 (175)
387 2onk_A Molybdate/tungstate ABC 92.4 0.081 2.8E-06 49.3 3.6 24 150-173 25-48 (240)
388 2olj_A Amino acid ABC transpor 92.4 0.07 2.4E-06 50.5 3.2 26 148-173 49-74 (263)
389 1u8z_A RAS-related protein RAL 92.4 0.079 2.7E-06 45.4 3.4 22 150-171 5-26 (168)
390 3fvq_A Fe(3+) IONS import ATP- 92.3 0.074 2.5E-06 52.6 3.5 26 148-173 29-54 (359)
391 2zej_A Dardarin, leucine-rich 92.3 0.06 2E-06 47.6 2.6 21 151-171 4-24 (184)
392 1z0j_A RAB-22, RAS-related pro 92.3 0.081 2.8E-06 45.5 3.4 23 150-172 7-29 (170)
393 1fuu_A Yeast initiation factor 92.3 0.36 1.2E-05 47.9 8.6 18 150-167 59-76 (394)
394 2eyq_A TRCF, transcription-rep 92.3 0.5 1.7E-05 54.3 10.8 41 129-170 605-645 (1151)
395 2d2e_A SUFC protein; ABC-ATPas 92.3 0.081 2.8E-06 49.6 3.6 25 148-172 28-52 (250)
396 3gmt_A Adenylate kinase; ssgci 92.3 0.077 2.6E-06 49.0 3.3 24 151-174 10-33 (230)
397 1z08_A RAS-related protein RAB 92.2 0.085 2.9E-06 45.4 3.4 22 150-171 7-28 (170)
398 1r8s_A ADP-ribosylation factor 92.2 0.09 3.1E-06 45.0 3.5 21 151-171 2-22 (164)
399 2pze_A Cystic fibrosis transme 92.2 0.073 2.5E-06 49.3 3.1 26 148-173 33-58 (229)
400 2whx_A Serine protease/ntpase/ 92.2 0.11 3.8E-06 55.5 5.0 51 148-210 185-236 (618)
401 2pt7_A CAG-ALFA; ATPase, prote 92.2 0.074 2.5E-06 52.2 3.3 37 136-174 160-196 (330)
402 1ky3_A GTP-binding protein YPT 92.2 0.085 2.9E-06 45.9 3.4 24 149-172 8-31 (182)
403 1g6h_A High-affinity branched- 92.2 0.071 2.4E-06 50.3 3.0 26 148-173 32-57 (257)
404 2ghi_A Transport protein; mult 92.2 0.075 2.6E-06 50.2 3.2 26 148-173 45-70 (260)
405 1c1y_A RAS-related protein RAP 92.2 0.086 2.9E-06 45.2 3.4 21 151-171 5-25 (167)
406 3cph_A RAS-related protein SEC 92.2 0.08 2.7E-06 47.7 3.3 23 149-171 20-42 (213)
407 1vpl_A ABC transporter, ATP-bi 92.2 0.078 2.7E-06 50.0 3.2 26 148-173 40-65 (256)
408 1mv5_A LMRA, multidrug resista 92.1 0.07 2.4E-06 49.9 2.9 26 148-173 27-52 (243)
409 1g16_A RAS-related protein SEC 92.1 0.081 2.8E-06 45.5 3.1 22 150-171 4-25 (170)
410 2ixe_A Antigen peptide transpo 92.1 0.077 2.6E-06 50.5 3.2 26 148-173 44-69 (271)
411 2yyz_A Sugar ABC transporter, 92.1 0.089 3E-06 52.1 3.7 26 148-173 28-53 (359)
412 2it1_A 362AA long hypothetical 92.1 0.09 3.1E-06 52.2 3.8 26 148-173 28-53 (362)
413 1m2o_B GTP-binding protein SAR 92.1 0.084 2.9E-06 46.9 3.3 24 148-171 22-45 (190)
414 2ff7_A Alpha-hemolysin translo 92.1 0.076 2.6E-06 49.8 3.0 26 148-173 34-59 (247)
415 1moz_A ARL1, ADP-ribosylation 92.1 0.073 2.5E-06 46.6 2.8 24 147-170 16-39 (183)
416 1ji0_A ABC transporter; ATP bi 92.1 0.076 2.6E-06 49.5 3.0 26 148-173 31-56 (240)
417 2qm8_A GTPase/ATPase; G protei 92.0 0.11 3.8E-06 51.1 4.3 28 147-174 53-80 (337)
418 3rlf_A Maltose/maltodextrin im 92.0 0.093 3.2E-06 52.4 3.8 26 148-173 28-53 (381)
419 1bif_A 6-phosphofructo-2-kinas 92.0 0.094 3.2E-06 54.1 4.0 26 149-174 39-64 (469)
420 2erx_A GTP-binding protein DI- 92.0 0.089 3E-06 45.3 3.2 22 150-171 4-25 (172)
421 3gfo_A Cobalt import ATP-bindi 92.0 0.079 2.7E-06 50.5 3.1 26 148-173 33-58 (275)
422 3fho_A ATP-dependent RNA helic 92.0 0.16 5.5E-06 52.9 5.8 21 148-168 157-177 (508)
423 2gj8_A MNME, tRNA modification 92.0 0.078 2.7E-06 46.3 2.9 23 149-171 4-26 (172)
424 1r2q_A RAS-related protein RAB 91.9 0.095 3.2E-06 45.0 3.4 22 150-171 7-28 (170)
425 4gzl_A RAS-related C3 botulinu 91.9 0.082 2.8E-06 47.6 3.0 34 138-171 19-52 (204)
426 2qi9_C Vitamin B12 import ATP- 91.9 0.082 2.8E-06 49.6 3.1 26 148-173 25-50 (249)
427 3q85_A GTP-binding protein REM 91.9 0.091 3.1E-06 45.2 3.2 21 151-171 4-24 (169)
428 1v43_A Sugar-binding transport 91.9 0.098 3.4E-06 52.1 3.8 26 148-173 36-61 (372)
429 1z47_A CYSA, putative ABC-tran 91.9 0.093 3.2E-06 51.9 3.6 26 148-173 40-65 (355)
430 2ykg_A Probable ATP-dependent 91.8 0.76 2.6E-05 49.6 11.2 25 149-173 28-52 (696)
431 1x6v_B Bifunctional 3'-phospho 91.8 0.1 3.4E-06 55.6 4.0 28 148-175 51-78 (630)
432 2yz2_A Putative ABC transporte 91.8 0.087 3E-06 49.9 3.2 26 148-173 32-57 (266)
433 3bc1_A RAS-related protein RAB 91.8 0.097 3.3E-06 46.1 3.4 22 150-171 12-33 (195)
434 1zj6_A ADP-ribosylation factor 91.8 0.14 4.9E-06 45.0 4.5 25 147-171 14-38 (187)
435 3bfv_A CAPA1, CAPB2, membrane 91.8 0.35 1.2E-05 45.8 7.4 58 131-195 64-122 (271)
436 4g1u_C Hemin import ATP-bindin 91.8 0.087 3E-06 50.0 3.1 26 148-173 36-61 (266)
437 3d31_A Sulfate/molybdate ABC t 91.8 0.082 2.8E-06 52.2 3.0 26 148-173 25-50 (348)
438 2k4b_A Transcriptional regulat 91.7 0.27 9.2E-06 38.8 5.4 70 416-497 28-98 (99)
439 2ihy_A ABC transporter, ATP-bi 91.7 0.089 3E-06 50.3 3.1 26 148-173 46-71 (279)
440 1upt_A ARL1, ADP-ribosylation 91.7 0.11 3.7E-06 44.8 3.5 23 149-171 7-29 (171)
441 1z0f_A RAB14, member RAS oncog 91.7 0.1 3.6E-06 45.2 3.4 23 150-172 16-38 (179)
442 1p5z_B DCK, deoxycytidine kina 91.7 0.034 1.2E-06 52.5 0.2 26 148-173 23-48 (263)
443 4a2p_A RIG-I, retinoic acid in 91.7 0.15 5.3E-06 53.3 5.3 23 150-172 23-45 (556)
444 3fdi_A Uncharacterized protein 91.7 0.081 2.8E-06 47.8 2.7 25 150-174 7-31 (201)
445 2wjg_A FEOB, ferrous iron tran 91.6 0.099 3.4E-06 46.0 3.2 22 150-171 8-29 (188)
446 3q72_A GTP-binding protein RAD 91.6 0.088 3E-06 45.2 2.8 21 151-171 4-24 (166)
447 3l0o_A Transcription terminati 91.6 0.3 1E-05 48.5 6.8 93 147-252 173-275 (427)
448 2fn4_A P23, RAS-related protei 91.6 0.1 3.4E-06 45.4 3.2 23 150-172 10-32 (181)
449 2oil_A CATX-8, RAS-related pro 91.6 0.11 3.6E-06 46.1 3.4 22 150-171 26-47 (193)
450 2nq2_C Hypothetical ABC transp 91.6 0.092 3.1E-06 49.4 3.0 26 148-173 30-55 (253)
451 3cio_A ETK, tyrosine-protein k 91.6 0.3 1E-05 47.1 6.8 57 131-194 86-143 (299)
452 2y8e_A RAB-protein 6, GH09086P 91.6 0.1 3.5E-06 45.3 3.1 22 150-171 15-36 (179)
453 4dsu_A GTPase KRAS, isoform 2B 91.6 0.11 3.8E-06 45.6 3.4 22 150-171 5-26 (189)
454 1g29_1 MALK, maltose transport 91.5 0.11 3.6E-06 51.9 3.6 26 148-173 28-53 (372)
455 2efe_B Small GTP-binding prote 91.5 0.11 3.9E-06 45.2 3.4 22 150-171 13-34 (181)
456 2hxs_A RAB-26, RAS-related pro 91.5 0.11 3.7E-06 45.2 3.2 23 150-172 7-29 (178)
457 3con_A GTPase NRAS; structural 91.5 0.11 3.8E-06 45.8 3.4 23 150-172 22-44 (190)
458 1svi_A GTP-binding protein YSX 91.5 0.11 3.7E-06 46.1 3.3 25 148-172 22-46 (195)
459 1m7b_A RND3/RHOE small GTP-bin 91.4 0.11 3.6E-06 45.8 3.1 22 150-171 8-29 (184)
460 3ihw_A Centg3; RAS, centaurin, 91.4 0.11 3.9E-06 45.8 3.3 21 151-171 22-42 (184)
461 3clv_A RAB5 protein, putative; 91.4 0.12 4E-06 45.9 3.4 24 149-172 7-30 (208)
462 3kkq_A RAS-related protein M-R 91.3 0.12 4.1E-06 45.2 3.4 22 150-171 19-40 (183)
463 2a9k_A RAS-related protein RAL 91.3 0.12 4.1E-06 45.2 3.4 22 150-171 19-40 (187)
464 2g6b_A RAS-related protein RAB 91.3 0.12 4.1E-06 45.0 3.4 22 150-171 11-32 (180)
465 2atv_A RERG, RAS-like estrogen 91.3 0.12 4.2E-06 45.9 3.5 24 148-171 27-50 (196)
466 2bme_A RAB4A, RAS-related prot 91.3 0.11 3.8E-06 45.5 3.1 22 150-171 11-32 (186)
467 3tw8_B RAS-related protein RAB 91.3 0.11 3.8E-06 45.1 3.1 22 150-171 10-31 (181)
468 3bwd_D RAC-like GTP-binding pr 91.2 0.14 4.9E-06 44.5 3.8 24 148-171 7-30 (182)
469 3c5c_A RAS-like protein 12; GD 91.2 0.13 4.4E-06 45.5 3.4 22 150-171 22-43 (187)
470 3hjn_A DTMP kinase, thymidylat 91.1 0.34 1.2E-05 43.5 6.3 47 152-205 3-49 (197)
471 2gf9_A RAS-related protein RAB 91.1 0.13 4.3E-06 45.5 3.4 22 150-171 23-44 (189)
472 1mh1_A RAC1; GTP-binding, GTPa 91.1 0.13 4.4E-06 45.0 3.4 22 150-171 6-27 (186)
473 1zd9_A ADP-ribosylation factor 91.1 0.13 4.4E-06 45.5 3.4 22 150-171 23-44 (188)
474 1f6b_A SAR1; gtpases, N-termin 91.1 0.11 3.8E-06 46.5 3.0 24 148-171 24-47 (198)
475 2ck3_A ATP synthase subunit al 91.1 0.82 2.8E-05 47.0 9.6 101 147-252 160-275 (510)
476 2g9w_A Conserved hypothetical 91.0 1.2 4E-05 37.3 9.2 75 418-502 4-78 (138)
477 1oxx_K GLCV, glucose, ABC tran 91.0 0.085 2.9E-06 52.2 2.3 26 148-173 30-55 (353)
478 3dz8_A RAS-related protein RAB 91.0 0.13 4.4E-06 45.6 3.3 23 150-172 24-46 (191)
479 2cxx_A Probable GTP-binding pr 91.0 0.11 3.7E-06 45.7 2.8 21 151-171 3-23 (190)
480 2pjz_A Hypothetical protein ST 91.0 0.11 3.8E-06 49.1 3.0 25 149-173 30-54 (263)
481 2bov_A RAla, RAS-related prote 91.0 0.13 4.5E-06 45.9 3.4 22 150-171 15-36 (206)
482 2obl_A ESCN; ATPase, hydrolase 90.9 0.17 5.7E-06 50.0 4.3 27 147-173 69-95 (347)
483 3pqc_A Probable GTP-binding pr 90.9 0.13 4.6E-06 45.3 3.3 24 149-172 23-46 (195)
484 1z06_A RAS-related protein RAB 90.9 0.14 4.7E-06 45.2 3.4 22 150-171 21-42 (189)
485 3gd7_A Fusion complex of cysti 90.9 0.13 4.4E-06 51.6 3.5 26 148-173 46-71 (390)
486 1ksh_A ARF-like protein 2; sma 90.9 0.12 4.2E-06 45.3 3.1 25 147-171 16-40 (186)
487 1f2t_A RAD50 ABC-ATPase; DNA d 90.9 0.16 5.4E-06 43.5 3.6 25 149-173 23-47 (149)
488 2fg5_A RAB-22B, RAS-related pr 90.9 0.13 4.4E-06 45.6 3.2 22 150-171 24-45 (192)
489 3tkl_A RAS-related protein RAB 90.9 0.14 4.7E-06 45.3 3.4 22 150-171 17-38 (196)
490 1vg8_A RAS-related protein RAB 90.8 0.14 4.8E-06 45.8 3.4 24 149-172 8-31 (207)
491 2cjw_A GTP-binding protein GEM 90.8 0.14 4.8E-06 45.5 3.4 22 150-171 7-28 (192)
492 2bbs_A Cystic fibrosis transme 90.8 0.12 4E-06 49.7 3.0 26 148-173 63-88 (290)
493 3t1o_A Gliding protein MGLA; G 90.8 0.14 4.9E-06 45.2 3.4 23 150-172 15-37 (198)
494 2a5j_A RAS-related protein RAB 90.8 0.14 4.9E-06 45.3 3.4 21 151-171 23-43 (191)
495 2iwr_A Centaurin gamma 1; ANK 90.8 0.1 3.5E-06 45.4 2.4 22 150-171 8-29 (178)
496 1x3s_A RAS-related protein RAB 90.8 0.14 4.9E-06 45.1 3.4 23 150-172 16-38 (195)
497 3t5g_A GTP-binding protein RHE 90.7 0.14 4.6E-06 44.8 3.1 22 149-170 6-27 (181)
498 2p5s_A RAS and EF-hand domain 90.7 0.14 4.9E-06 45.6 3.4 25 148-172 27-51 (199)
499 3reg_A RHO-like small GTPase; 90.7 0.15 5E-06 45.3 3.4 22 150-171 24-45 (194)
500 1lw7_A Transcriptional regulat 90.7 0.12 4E-06 51.4 3.0 25 149-173 170-194 (365)
No 1
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=100.00 E-value=1.3e-42 Score=356.21 Aligned_cols=373 Identities=25% Similarity=0.318 Sum_probs=312.4
Q ss_pred HHHHHhhcCcCCCCCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEE
Q 010136 110 MSAVREALHVSTAPSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFS 189 (517)
Q Consensus 110 ~~~~~~~l~~~~~p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~ 189 (517)
++.+++.|++++.|+.++||+++++.+..++...+....+.+++|+||||||||++++.+++.+.......+.. +.+++
T Consensus 5 ~f~~~~~l~~~~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~-~~~~~ 83 (387)
T 2v1u_A 5 IFRKRWVLLPDYVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVL-VKPIY 83 (387)
T ss_dssp SBSCHHHHSTTCCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCC-EEEEE
T ss_pred hhhCHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCC-eEEEE
Confidence 34567789999999999999999999999998887777888999999999999999999999987654333332 67999
Q ss_pred EeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhccc--CchHHHHHhccCC
Q 010136 190 INCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITR--DRAVLHDLFMLTT 267 (517)
Q Consensus 190 vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~--~~~~L~~l~~~~~ 267 (517)
+||....+...++..++.+++.... ..+....+.+..++. .....+++.||||||+|.+... .++.|+.++++..
T Consensus 84 i~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~l~~--~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~ 160 (387)
T 2v1u_A 84 VNARHRETPYRVASAIAEAVGVRVP-FTGLSVGEVYERLVK--RLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQ 160 (387)
T ss_dssp EETTTSCSHHHHHHHHHHHHSCCCC-SSCCCHHHHHHHHHH--HHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGG
T ss_pred EECCcCCCHHHHHHHHHHHhCCCCC-CCCCCHHHHHHHHHH--HHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchh
Confidence 9999999999999999999965322 223333343444443 1223556899999999999877 6789999998854
Q ss_pred C-C-CCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHh-hhccCCCChhHHHHHHHHHHHHh
Q 010136 268 F-P-FSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLM-ELSYIVFQPQALELCARKVAAAS 344 (517)
Q Consensus 268 ~-~-~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~-~~~~~~~~~~ai~~ia~~~~~~~ 344 (517)
. . ..++.+|+++|..++.+.+.+++.+| +....+.|+||+.+++.+|+..++. .+....+++++++.+++.+....
T Consensus 161 ~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r-~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 239 (387)
T 2v1u_A 161 ELGDRVWVSLVGITNSLGFVENLEPRVKSS-LGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREH 239 (387)
T ss_dssp CC-----CEEEEECSCSTTSSSSCHHHHTT-TTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSS
T ss_pred hcCCCceEEEEEEECCCchHhhhCHHHHhc-CCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhc
Confidence 2 2 57899999999887777888999998 6667999999999999999999987 44456789999999998766566
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccChhHHHhccCCHH
Q 010136 345 GDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSPVVDTIKSLPQH 424 (517)
Q Consensus 345 Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~~~~~i~~L~~~ 424 (517)
||+|.++++|+.|+.+|..++.. .|+.+||.+|+.....+.+...+.+|+.+
T Consensus 240 G~~r~~~~~l~~a~~~a~~~~~~----------------------------~i~~~~v~~a~~~~~~~~~~~~~~~l~~~ 291 (387)
T 2v1u_A 240 GDARRALDLLRVAGEIAERRREE----------------------------RVRREHVYSARAEIERDRVSEVVRTLPLH 291 (387)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCS----------------------------CBCHHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred cCHHHHHHHHHHHHHHHHHcCCC----------------------------CcCHHHHHHHHHHHhhchHHHHHHcCCHH
Confidence 99999999999999888765443 79999999999999877888899999999
Q ss_pred HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhcCceeec-----cCCceeEEEeecCH
Q 010136 425 QQILLCSAVKFFRGGKKDMTVGELNKSYMNICKTSLIPPVGTLEFFSMCRVLHDQGVLKVG-----RDDKLKRVTLKADE 499 (517)
Q Consensus 425 ~k~iL~al~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~L~~~glI~~~-----~~~~~~~~~l~~~~ 499 (517)
++.+|++++.+.. +...++++++|+.|..+|+..+..|++..++..+++.|+..|+|... ++|+++.++|.+++
T Consensus 292 ~~~~l~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~g~~g~~~~~~l~~~~ 370 (387)
T 2v1u_A 292 AKLVLLSIMMLED-GGRPASTGEIYERYKELTSTLGLEHVTLRRVSGIISELDMLGIVKSRVVSRGRYGKTREVSLDADR 370 (387)
T ss_dssp HHHHHHHHHHHSS-SSCCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEEEEECGGGCEEEEEEECSCH
T ss_pred HHHHHHHHHHHhc-CCCCCcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCeEEEeecCCCCCceeEEEecCCH
Confidence 9999999997765 55578999999999999999999999999999999999999999873 57889999999999
Q ss_pred HHHHHHHhCChhhhhhc
Q 010136 500 SDITFALQGVRFFRNCL 516 (517)
Q Consensus 500 ~~i~~~l~~~~~~~~~~ 516 (517)
++|.++|++|+.|+.+|
T Consensus 371 ~~i~~~l~~~~~~~~~~ 387 (387)
T 2v1u_A 371 LAVENALSEDPFVARLL 387 (387)
T ss_dssp HHHHHHHHHSTTGGGGC
T ss_pred HHHHHHHhccHhhhhcC
Confidence 99999999999999875
No 2
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-41 Score=331.67 Aligned_cols=272 Identities=14% Similarity=0.182 Sum_probs=224.7
Q ss_pred hhcCcCCCCCC-CCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCC
Q 010136 115 EALHVSTAPST-IVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCT 193 (517)
Q Consensus 115 ~~l~~~~~p~~-l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~ 193 (517)
+.|.++|.|.. |+|||+|++.|..+|..++.++.++++||+||||||||++++.+++++.......+.+.+.+++|||+
T Consensus 10 ~~l~~~~~~~~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~ 89 (318)
T 3te6_A 10 ESIRESLQKRELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDAL 89 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETT
T ss_pred hhhhhccCCccccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecc
Confidence 34445566655 99999999999999999999999999999999999999999999999987665555666899999999
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcE
Q 010136 194 SLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRF 273 (517)
Q Consensus 194 ~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v 273 (517)
.+.+++.+|..|+.++.+.... .+ ...+.|..+|... ......++||||||+|.|. .|++||.+++|.....+++
T Consensus 90 ~~~t~~~~~~~I~~~L~g~~~~-~~-~~~~~L~~~f~~~-~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~ 164 (318)
T 3te6_A 90 ELAGMDALYEKIWFAISKENLC-GD-ISLEALNFYITNV-PKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKL 164 (318)
T ss_dssp CCC--HHHHHHHHHHHSCCC---CC-CCHHHHHHHHHHS-CGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCE
T ss_pred ccCCHHHHHHHHHHHhcCCCCC-ch-HHHHHHHHHHHHh-hhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcE
Confidence 9999999999999999765432 22 2367788888731 1134678999999999998 7899999999987788899
Q ss_pred EEEEEECCCCcchh-hcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccC--------------------------
Q 010136 274 ILIGIANAIDLADR-FLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYI-------------------------- 326 (517)
Q Consensus 274 ~lI~ian~~~~~~~-l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~-------------------------- 326 (517)
+||||+|+++++++ +++++.|| +..++|.|+||+.+|+.+||+.|+..+...
T Consensus 165 ~vI~i~n~~d~~~~~L~~~v~SR-~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 243 (318)
T 3te6_A 165 SIICVGGHNVTIREQINIMPSLK-AHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIP 243 (318)
T ss_dssp EEEEECCSSCCCHHHHHTCHHHH-TTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------C
T ss_pred EEEEEecCcccchhhcchhhhcc-CCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccc
Confidence 99999999998886 57899999 777899999999999999999999865322
Q ss_pred --------CCChhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCcccc
Q 010136 327 --------VFQPQALELCARKVAAASGDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVR 398 (517)
Q Consensus 327 --------~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt 398 (517)
.++++++++||++++..+||+|+|+++|+.|+++|+.+...+.... +. ...||
T Consensus 244 ~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~ae~e~~~k~~~~-----~~--------------~~~i~ 304 (318)
T 3te6_A 244 DNVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEAAVEISKKDFVRKGGLQ-----KG--------------KLVVS 304 (318)
T ss_dssp TTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHTTEE-----TT--------------EECCS
T ss_pred ccccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHhccCCC-----CC--------------cEEee
Confidence 4699999999999999999999999999999999999877632211 01 11688
Q ss_pred HHHHHHHHHHhcc
Q 010136 399 VDHMAVALSNTFK 411 (517)
Q Consensus 399 ~~~v~~a~~~~~~ 411 (517)
.+++.++++++..
T Consensus 305 ~~~~~~~~~~~~~ 317 (318)
T 3te6_A 305 QEMVPRYFSEAIN 317 (318)
T ss_dssp EECCTHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 8888888887653
No 3
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=100.00 E-value=1e-39 Score=334.39 Aligned_cols=370 Identities=24% Similarity=0.309 Sum_probs=294.3
Q ss_pred HHHHHhhcCcCCCCCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEE
Q 010136 110 MSAVREALHVSTAPSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFS 189 (517)
Q Consensus 110 ~~~~~~~l~~~~~p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~ 189 (517)
++.+++.|++++.|+.++||+++++.+..++...+.+..+.+++|+||||||||++++.+++.+...... ...+++
T Consensus 6 i~~~~~~l~~~~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~----~~~~~~ 81 (386)
T 2qby_A 6 IFINREYLLPDYIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG----KFKHVY 81 (386)
T ss_dssp CBSCGGGGSSSCCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCS----SCEEEE
T ss_pred cccchhhCCCccCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC----CceEEE
Confidence 3445677889999999999999999999999887777778899999999999999999999887643110 257999
Q ss_pred EeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC-chHHHHHhccCC-
Q 010136 190 INCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD-RAVLHDLFMLTT- 267 (517)
Q Consensus 190 vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~-~~~L~~l~~~~~- 267 (517)
++|....+...++..++..++.... ..+....+.+..++. . ......+.||||||+|.+.... ++.++.++++..
T Consensus 82 i~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~~l~~-~-l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~ 158 (386)
T 2qby_A 82 INTRQIDTPYRVLADLLESLDVKVP-FTGLSIAELYRRLVK-A-VRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSE 158 (386)
T ss_dssp EEHHHHCSHHHHHHHHTTTTSCCCC-SSSCCHHHHHHHHHH-H-HHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHHHhCCCCC-CCCCCHHHHHHHHHH-H-HhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhh
Confidence 9998888888888888887754322 123332333333332 1 1134458999999999998664 778888877642
Q ss_pred CCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHh-hhccCCCChhHHHHHHHHHHHHhCC
Q 010136 268 FPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLM-ELSYIVFQPQALELCARKVAAASGD 346 (517)
Q Consensus 268 ~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~-~~~~~~~~~~ai~~ia~~~~~~~Gd 346 (517)
....++.+|+++|..++...+.+++.+| +..+.+.|+||+.+++.+++..++. .+....+++++++++++.....+|+
T Consensus 159 ~~~~~~~~I~~~~~~~~~~~~~~~~~~r-~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~ 237 (386)
T 2qby_A 159 VNKSKISFIGITNDVKFVDLLDPRVKSS-LSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGD 237 (386)
T ss_dssp CCC--EEEEEEESCGGGGGGCTTHHHHT-TTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCC
T ss_pred cCCCeEEEEEEECCCChHhhhCHHHhcc-CCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 2456899999999887777888899998 6667999999999999999999886 4444578999999999876656699
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccChhHHHhccCCHHHH
Q 010136 347 MRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSPVVDTIKSLPQHQQ 426 (517)
Q Consensus 347 ~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~~~~~i~~L~~~~k 426 (517)
+|.++++|+.|+.+|..++.. .|+.+||..|+..+....+...+.++|.+++
T Consensus 238 ~r~~~~ll~~a~~~a~~~~~~----------------------------~i~~~~v~~a~~~~~~~~~~~~~~~l~~~~~ 289 (386)
T 2qby_A 238 ARRALDLLRVSGEIAERMKDT----------------------------KVKEEYVYMAKEEIERDRVRDIILTLPFHSK 289 (386)
T ss_dssp HHHHHHHHHHHHHHHHHTTCS----------------------------SCCHHHHHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCC----------------------------ccCHHHHHHHHHHHhhchHHHHHHcCCHHHH
Confidence 999999999999888765544 7999999999999887777888999999999
Q ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhcCceeec-----cCCceeEEEeecCHHH
Q 010136 427 ILLCSAVKFFRGGKKDMTVGELNKSYMNICKTSLIPPVGTLEFFSMCRVLHDQGVLKVG-----RDDKLKRVTLKADESD 501 (517)
Q Consensus 427 ~iL~al~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~L~~~glI~~~-----~~~~~~~~~l~~~~~~ 501 (517)
.+|++++.+...+...+++++||+.|..+|+..+..|++..++..+++.|+.+|+|... +.|+|+.++|.+++++
T Consensus 290 ~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~y~~~~l~~~~~~ 369 (386)
T 2qby_A 290 LVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVEAVTQRRVSDIINELDMVGILTAKVVNRGRYGKTKEIGLAVDKNI 369 (386)
T ss_dssp HHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHTSEEEEECCCTTSCCCEEEEESSCSHH
T ss_pred HHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCEEEEeecCCCCCCeEEEEeCCCHHH
Confidence 99999998765555668899999999999999999999999999999999999999753 5789999999999999
Q ss_pred HHHHHhC-Chhhhhh
Q 010136 502 ITFALQG-VRFFRNC 515 (517)
Q Consensus 502 i~~~l~~-~~~~~~~ 515 (517)
|.++|++ |+.|..+
T Consensus 370 v~~~l~~~~~~~~~~ 384 (386)
T 2qby_A 370 IVRSLIESDSRFADL 384 (386)
T ss_dssp HHHHHHHHC------
T ss_pred HHHHHhcCChhhhhh
Confidence 9999999 9988765
No 4
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=100.00 E-value=7.1e-39 Score=328.50 Aligned_cols=353 Identities=21% Similarity=0.287 Sum_probs=290.2
Q ss_pred HHHHHhhcCcCCCCCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHH-hcCCCCceEE
Q 010136 110 MSAVREALHVSTAPSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAK-EAGLQQPEVF 188 (517)
Q Consensus 110 ~~~~~~~l~~~~~p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~-~~~~~~~~~v 188 (517)
++.++..|++.+.|+.++||+++++.+..++..++.+..+.+++|+||||||||++++.+++++..... +.+.+.+.++
T Consensus 6 i~~~~~~l~~~~~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~ 85 (384)
T 2qby_B 6 IKNPKVFIDPLSVFKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQA 85 (384)
T ss_dssp -CCTTTTTCHHHHCSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEE
T ss_pred ccccHhhcCCccCCCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEE
Confidence 445566788889999999999999999999999888877889999999999999999999999876432 1122126799
Q ss_pred EEeCCCCC-CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC-chH-HHHHhcc
Q 010136 189 SINCTSLT-NTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD-RAV-LHDLFML 265 (517)
Q Consensus 189 ~vn~~~~~-s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~-~~~-L~~l~~~ 265 (517)
++||.... ++..++..++.++.+......+......+..++.. . ...++ ||||||+|.+.... ++. ++.|+++
T Consensus 86 ~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~--l-~~~~~-vlilDEi~~l~~~~~~~~~l~~l~~~ 161 (384)
T 2qby_B 86 YVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNG--T-RNIRA-IIYLDEVDTLVKRRGGDIVLYQLLRS 161 (384)
T ss_dssp EEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHH--H-SSSCE-EEEEETTHHHHHSTTSHHHHHHHHTS
T ss_pred EEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHH--h-ccCCC-EEEEECHHHhccCCCCceeHHHHhcC
Confidence 99999888 89999999999985433333333333444444431 1 12333 99999999998764 788 9999988
Q ss_pred CCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHh-hhccCCCChhHHHHHHHHHHHHh
Q 010136 266 TTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLM-ELSYIVFQPQALELCARKVAAAS 344 (517)
Q Consensus 266 ~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~-~~~~~~~~~~ai~~ia~~~~~~~ 344 (517)
. .++.+|+++|..++.+.+++++.+| +.. .+.|+||+.+++.+|+..++. ++....+++++++.+++.+....
T Consensus 162 ~----~~~~iI~~t~~~~~~~~l~~~l~sr-~~~-~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 235 (384)
T 2qby_B 162 D----ANISVIMISNDINVRDYMEPRVLSS-LGP-SVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEH 235 (384)
T ss_dssp S----SCEEEEEECSSTTTTTTSCHHHHHT-CCC-EEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTC
T ss_pred C----cceEEEEEECCCchHhhhCHHHHhc-CCC-eEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhcc
Confidence 6 6889999999877777889999998 544 999999999999999999987 45556889999999999776667
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccChhHHHhccCCHH
Q 010136 345 GDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSPVVDTIKSLPQH 424 (517)
Q Consensus 345 Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~~~~~i~~L~~~ 424 (517)
||+|.|+++|+.|+.+|. +.. .|+.+||.+++.+...+.+...+.+|+.+
T Consensus 236 G~~r~a~~~l~~a~~~a~--~~~----------------------------~i~~~~v~~~~~~~~~~~~~~~~~~l~~~ 285 (384)
T 2qby_B 236 GDARKAVNLLFRAAQLAS--GGG----------------------------IIRKEHVDKAIVDYEQERLIEAVKALPFH 285 (384)
T ss_dssp CCHHHHHHHHHHHHHHTT--SSS----------------------------CCCHHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred CCHHHHHHHHHHHHHHhc--CCC----------------------------ccCHHHHHHHHHHHhcchHHHHHHcCCHH
Confidence 999999999999998876 222 79999999999999887888889999999
Q ss_pred HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhcCceeec-----cCCceeEEEeecCH
Q 010136 425 QQILLCSAVKFFRGGKKDMTVGELNKSYMNICKTSLIPPVGTLEFFSMCRVLHDQGVLKVG-----RDDKLKRVTLKADE 499 (517)
Q Consensus 425 ~k~iL~al~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~L~~~glI~~~-----~~~~~~~~~l~~~~ 499 (517)
++.+|++++. .. .-+++++.|..+|+.++..|++..++.++++.|+..|+|... ++|+++.++|.+++
T Consensus 286 ~~~~l~al~~-~~------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~~~~~g~~g~~~~~~l~~~~ 358 (384)
T 2qby_B 286 YKLALRSLIE-SE------DVMSAHKMYTDLCNKFKQKPLSYRRFSDIISELDMFGIVKIRIINRGRAGGVKKYALVEDK 358 (384)
T ss_dssp HHHHHHHHHT-CC------BHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEEEECCTTTTCCEEEEEESSS
T ss_pred HHHHHHHHHH-hc------ccChHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCEEEEeccCCCCCceEEEEecCCH
Confidence 9999999885 11 117889999999999998999999999999999999999864 46889999999999
Q ss_pred HHHHHHHhCC
Q 010136 500 SDITFALQGV 509 (517)
Q Consensus 500 ~~i~~~l~~~ 509 (517)
++|.++|+++
T Consensus 359 ~~v~~~l~~~ 368 (384)
T 2qby_B 359 EKVLRALNET 368 (384)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 5
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=100.00 E-value=7e-38 Score=321.48 Aligned_cols=356 Identities=18% Similarity=0.239 Sum_probs=287.5
Q ss_pred HHhhcCcCCCCCCCCCcHHHHHHHHHHHHHhhccCCCC--eEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEE
Q 010136 113 VREALHVSTAPSTIVCREDEQKKVLEFCKKNLEEEKAG--SLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSI 190 (517)
Q Consensus 113 ~~~~l~~~~~p~~l~gRe~e~~~l~~~L~~~l~~~~~~--~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~v 190 (517)
++..|++++.|+.++||+++++.+..++...+.+..+. +++|+||||||||++++.+++.+.... .+.++++
T Consensus 6 ~~~~l~~~~~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~------~~~~~~i 79 (389)
T 1fnn_A 6 DDSVFSPSYVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT------TARFVYI 79 (389)
T ss_dssp CGGGGSTTCCCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC------CCEEEEE
T ss_pred CHhhcCCccCCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc------CeeEEEE
Confidence 45678889999999999999999999999988776666 899999999999999999988764310 2579999
Q ss_pred eCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCC-C
Q 010136 191 NCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF-P 269 (517)
Q Consensus 191 n~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~-~ 269 (517)
||....+...++..++..++.... ..+......+..+.. . ......+.||||||+|.+ ....++.|+++... .
T Consensus 80 ~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~l~~-~-l~~~~~~~vlilDE~~~l---~~~~~~~L~~~~~~~~ 153 (389)
T 1fnn_A 80 NGFIYRNFTAIIGEIARSLNIPFP-RRGLSRDEFLALLVE-H-LRERDLYMFLVLDDAFNL---APDILSTFIRLGQEAD 153 (389)
T ss_dssp ETTTCCSHHHHHHHHHHHTTCCCC-SSCCCHHHHHHHHHH-H-HHHTTCCEEEEEETGGGS---CHHHHHHHHHHTTCHH
T ss_pred eCccCCCHHHHHHHHHHHhCccCC-CCCCCHHHHHHHHHH-H-HhhcCCeEEEEEECcccc---chHHHHHHHHHHHhCC
Confidence 999999999999999998864322 122332332222221 1 112456789999999999 45666666666432 2
Q ss_pred C---CcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhh-hccCCCChhHHHHHHHHHHHH--
Q 010136 270 F---SRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLME-LSYIVFQPQALELCARKVAAA-- 343 (517)
Q Consensus 270 ~---~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~-~~~~~~~~~ai~~ia~~~~~~-- 343 (517)
. .++.+|+++|..++.+.+.+++.+| +....+.|+||+.+++.+++..++.. +....+++++++.+++.++..
T Consensus 154 ~~~~~~~~iI~~~~~~~~~~~l~~~~~~r-~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 232 (389)
T 1fnn_A 154 KLGAFRIALVIVGHNDAVLNNLDPSTRGI-MGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTP 232 (389)
T ss_dssp HHSSCCEEEEEEESSTHHHHTSCHHHHHH-HTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSST
T ss_pred CCCcCCEEEEEEECCchHHHHhCHHhhhc-CCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhccc
Confidence 2 5889999999877777788888888 66568999999999999999999863 334578999999998865444
Q ss_pred ----hCCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccChhHHHhc
Q 010136 344 ----SGDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSPVVDTIK 419 (517)
Q Consensus 344 ----~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~~~~~i~ 419 (517)
.||+|.++++|+.|+.+|..++.. .|+.+||..++.......+...+.
T Consensus 233 ~~~~~G~~r~~~~~l~~a~~~a~~~~~~----------------------------~i~~~~v~~~~~~~~~~~~~~~l~ 284 (389)
T 1fnn_A 233 LDTNRGDARLAIDILYRSAYAAQQNGRK----------------------------HIAPEDVRKSSKEVLFGISEEVLI 284 (389)
T ss_dssp TCTTSCCHHHHHHHHHHHHHHHHHTTCS----------------------------SCCHHHHHHHHHHHSCCCCHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHhCCC----------------------------CcCHHHHHHHHHHHhhhhHHHHHH
Confidence 799999999999999988765544 799999999999999888999999
Q ss_pred cCCHHHHHHHHHHHHHHh-cCCCCccHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhcCceeec-------cCCcee
Q 010136 420 SLPQHQQILLCSAVKFFR-GGKKDMTVGELNKSYMNICKTSLIPPVGTLEFFSMCRVLHDQGVLKVG-------RDDKLK 491 (517)
Q Consensus 420 ~L~~~~k~iL~al~~l~~-~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~L~~~glI~~~-------~~~~~~ 491 (517)
.|+.+++.+|++++.+.+ .+...++++++++.|..+|+..++.+++..+++++++.|++.|||... ++|+++
T Consensus 285 ~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~ 364 (389)
T 1fnn_A 285 GLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTT 364 (389)
T ss_dssp HSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSSEEEEC---------CE
T ss_pred cCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCcee
Confidence 999999999999998864 222278999999999999999999999999999999999999999873 347889
Q ss_pred EEEeecCHHHHHHHHhCC
Q 010136 492 RVTLKADESDITFALQGV 509 (517)
Q Consensus 492 ~~~l~~~~~~i~~~l~~~ 509 (517)
.|+|.+++++|.+++.++
T Consensus 365 ~~~l~~~~~~v~~~~~~~ 382 (389)
T 1fnn_A 365 LISIGTEPLDTLEAVITK 382 (389)
T ss_dssp EEECCSSCHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHH
Confidence 999999999999998775
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=100.00 E-value=6.1e-35 Score=301.97 Aligned_cols=364 Identities=19% Similarity=0.242 Sum_probs=280.6
Q ss_pred HHHHhhcCcCCCCCCCCCcHHHHHHHHHHH-HHhhcc--CCCCeEEE--EcCCCCcHHHHHHHHHHHHHHHHHhcCCCCc
Q 010136 111 SAVREALHVSTAPSTIVCREDEQKKVLEFC-KKNLEE--EKAGSLYV--CGCPGTGKSLSMEKVQHYLVDWAKEAGLQQP 185 (517)
Q Consensus 111 ~~~~~~l~~~~~p~~l~gRe~e~~~l~~~L-~~~l~~--~~~~~lli--~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~ 185 (517)
+.++..|++++.|+.++||+++++.|..++ .....+ ..+.+++| +|+||+|||++++.+++.+.......+. .+
T Consensus 9 ~~~~~~~~~~~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~-~~ 87 (412)
T 1w5s_A 9 FKDRRVFDENYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGL-TV 87 (412)
T ss_dssp BSCGGGGSTTCCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTC-CE
T ss_pred hccHhhcCCccCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCC-ce
Confidence 345677889999999999999999999999 887765 56778999 9999999999999999988654322222 25
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhccc---CchHHHHH
Q 010136 186 EVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITR---DRAVLHDL 262 (517)
Q Consensus 186 ~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~---~~~~L~~l 262 (517)
.+++++|....+...++..++..++..... .+....+.+..+.. ... ...++.||||||+|++... .++.++.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~-~l~-~~~~~~llvlDe~~~l~~~~~~~~~~l~~l 164 (412)
T 1w5s_A 88 KQAYVNAFNAPNLYTILSLIVRQTGYPIQV-RGAPALDILKALVD-NLY-VENHYLLVILDEFQSMLSSPRIAAEDLYTL 164 (412)
T ss_dssp EEEEEEGGGCCSHHHHHHHHHHHHTCCCCC-TTCCHHHHHHHHHH-HHH-HHTCEEEEEEESTHHHHSCTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCCCC-CCCCHHHHHHHHHH-HHH-hcCCeEEEEEeCHHHHhhccCcchHHHHHH
Confidence 789999988888999999999999654221 12222222222222 111 2356899999999999764 56778777
Q ss_pred hccCC-CC--C--CcEEEEEEECCCCcchhhc---ccccccCCCceEEEeCCCCHHHHHHHHHHHHh-hhccCCCChhHH
Q 010136 263 FMLTT-FP--F--SRFILIGIANAIDLADRFL---PRLQSMNCKPLVVTFRAYSKDQIIRILQERLM-ELSYIVFQPQAL 333 (517)
Q Consensus 263 ~~~~~-~~--~--~~v~lI~ian~~~~~~~l~---~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~-~~~~~~~~~~ai 333 (517)
+++.. .. + .++.+|++++..++.+.+. +++.++ +.. .+.|+||+.+++.+++..++. ......++++++
T Consensus 165 ~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~-~~~-~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~ 242 (412)
T 1w5s_A 165 LRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQ-IGF-KLHLPAYKSRELYTILEQRAELGLRDTVWEPRHL 242 (412)
T ss_dssp HTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTT-CSE-EEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHH
T ss_pred HHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhh-cCC-eeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHH
Confidence 76632 12 4 7899999898766666666 777787 544 499999999999999998876 333346889999
Q ss_pred HHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhc
Q 010136 334 ELCARKVAAAS---GDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTF 410 (517)
Q Consensus 334 ~~ia~~~~~~~---Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~ 410 (517)
+.+++.+...+ |++|.++.+|+.|+..|..++.. .|+.+++..++....
T Consensus 243 ~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~----------------------------~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 243 ELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRD----------------------------SLSEDLVRKAVSENE 294 (412)
T ss_dssp HHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCS----------------------------SCCHHHHHHHHHHC-
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCC----------------------------CCCHHHHHHHHHHHh
Confidence 99988655445 99999999999998877655433 689999999998876
Q ss_pred -cChhHHHhccCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH-HhcCCCCCChHHHHHHHHHHhhcCceeec---
Q 010136 411 -KSPVVDTIKSLPQHQQILLCSAVKFFRGGKKDMTVGELNKSYMNIC-KTSLIPPVGTLEFFSMCRVLHDQGVLKVG--- 485 (517)
Q Consensus 411 -~~~~~~~i~~L~~~~k~iL~al~~l~~~~~~~~~~~~l~~~y~~~~-~~~~~~~~~~~~~~~~~~~L~~~glI~~~--- 485 (517)
...+...+..||.+++.+|.+++.+...+...++++++++.|..+| +..+.++++..++..+++.|++.|||...
T Consensus 295 ~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~ 374 (412)
T 1w5s_A 295 AASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAKPSG 374 (412)
T ss_dssp -----CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEECC-
T ss_pred ccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEeeccc
Confidence 5556677889999999999999877654556789999999999999 99988899999999999999999999764
Q ss_pred --cCCceeEEEee--cCHHHHHHHHhC
Q 010136 486 --RDDKLKRVTLK--ADESDITFALQG 508 (517)
Q Consensus 486 --~~~~~~~~~l~--~~~~~i~~~l~~ 508 (517)
+.|+++.++|. +++++|.++|++
T Consensus 375 ~~~~g~~~~~~l~~~~~~~~~~~~~~~ 401 (412)
T 1w5s_A 375 RGMRGRTTLFRLAPHLPADRLIEVVDN 401 (412)
T ss_dssp ------CCEEEECTTSCHHHHHHHHHH
T ss_pred CCCCCceeEEEeCCCCCHHHHHHHHHH
Confidence 56789999999 999999999875
No 7
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=9.8e-25 Score=219.97 Aligned_cols=227 Identities=18% Similarity=0.169 Sum_probs=168.4
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHhhc---------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEe
Q 010136 121 TAPSTIVCREDEQKKVLEFCKKNLE---------EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSIN 191 (517)
Q Consensus 121 ~~p~~l~gRe~e~~~l~~~L~~~l~---------~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn 191 (517)
..++++.|.+++.++|.+.+.-.+. -..+.++|||||||||||++|++++.++. ..|+.++
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~----------~~fi~v~ 248 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS----------ATFLRIV 248 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT----------CEEEEEE
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhC----------CCEEEEE
Confidence 3445899999999999998765332 23467999999999999999999999875 5799999
Q ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC-----------chHHH
Q 010136 192 CTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD-----------RAVLH 260 (517)
Q Consensus 192 ~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~-----------~~~L~ 260 (517)
+..+.+.+. |. ....++.+|.. +....|+||||||+|.+...+ +..+.
T Consensus 249 ~s~l~sk~v-----------------Ge-sek~ir~lF~~---Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~ 307 (437)
T 4b4t_I 249 GSELIQKYL-----------------GD-GPRLCRQIFKV---AGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTML 307 (437)
T ss_dssp SGGGCCSSS-----------------SH-HHHHHHHHHHH---HHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHH
T ss_pred HHHhhhccC-----------------ch-HHHHHHHHHHH---HHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHH
Confidence 988755432 22 26678888873 345678999999999997653 12344
Q ss_pred HHhcc--CCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChh-HHHHHH
Q 010136 261 DLFML--TTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQ-ALELCA 337 (517)
Q Consensus 261 ~l~~~--~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~-ai~~ia 337 (517)
.|+.+ .......++||++|| .++.+|+++.+.+.....|+|+.++.++..+||+..+..+. ++++ .++.+|
T Consensus 308 ~LL~~lDg~~~~~~ViVIaATN---rpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~---l~~dvdl~~LA 381 (437)
T 4b4t_I 308 ELLNQLDGFDDRGDVKVIMATN---KIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN---LSEDVNLETLV 381 (437)
T ss_dssp HHHHHHHHCCCSSSEEEEEEES---CSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC---BCSCCCHHHHH
T ss_pred HHHHHhhCcCCCCCEEEEEeCC---ChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC---CCCcCCHHHHH
Confidence 44443 123456899999999 57889999987322356899999999999999998887652 2332 377788
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccChh
Q 010136 338 RKVAAASGDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSPV 414 (517)
Q Consensus 338 ~~~~~~~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~~ 414 (517)
+.+..++| ...-.+|+.|+..|.++++. .|+.+||..|+.++..+..
T Consensus 382 ~~T~GfSG--ADI~~l~~eA~~~Air~~~~----------------------------~It~eDf~~Al~rv~~~~~ 428 (437)
T 4b4t_I 382 TTKDDLSG--ADIQAMCTEAGLLALRERRM----------------------------QVTAEDFKQAKERVMKNKV 428 (437)
T ss_dssp HHCCSCCH--HHHHHHHHHHHHHHHHTTCS----------------------------CBCHHHHHHHHHHHHHHHC
T ss_pred HhCCCCCH--HHHHHHHHHHHHHHHHcCCC----------------------------ccCHHHHHHHHHHHhCCCC
Confidence 76544444 33447899999999887655 7999999999988765443
No 8
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.1e-24 Score=215.97 Aligned_cols=222 Identities=18% Similarity=0.176 Sum_probs=162.0
Q ss_pred CCCCCcHHHHHHHHHHHHHhh---------ccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCC
Q 010136 124 STIVCREDEQKKVLEFCKKNL---------EEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTS 194 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l---------~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~ 194 (517)
+++.|.+++.++|.+.+.--+ .-..+.++|||||||||||++|++++.+++ ..|+.+++..
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~----------~~f~~v~~s~ 217 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTD----------CKFIRVSGAE 217 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHT----------CEEEEEEGGG
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhC----------CCceEEEhHH
Confidence 356788888777777754322 123467999999999999999999999875 5799999988
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC-----------chHHHHHh
Q 010136 195 LTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD-----------RAVLHDLF 263 (517)
Q Consensus 195 ~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~-----------~~~L~~l~ 263 (517)
+.+.+. |. ....++.+|.. +....|+||||||+|.+...+ +..+..|+
T Consensus 218 l~sk~v-----------------Ge-se~~vr~lF~~---Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL 276 (405)
T 4b4t_J 218 LVQKYI-----------------GE-GSRMVRELFVM---AREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELL 276 (405)
T ss_dssp GSCSST-----------------TH-HHHHHHHHHHH---HHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHH
T ss_pred hhcccc-----------------ch-HHHHHHHHHHH---HHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHH
Confidence 755432 33 36778888873 345678999999999997642 12344555
Q ss_pred ccC--CCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHH
Q 010136 264 MLT--TFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVA 341 (517)
Q Consensus 264 ~~~--~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~ 341 (517)
.+. ......++|||+|| .++.+||++.+.+.....|+|+.++.++..+||+..+.... .-++-.++.+|+.+.
T Consensus 277 ~~lDg~~~~~~V~vIaATN---rpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~--l~~dvdl~~lA~~t~ 351 (405)
T 4b4t_J 277 NQLDGFETSKNIKIIMATN---RLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMN--LTRGINLRKVAEKMN 351 (405)
T ss_dssp HHHHTTTCCCCEEEEEEES---CSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSB--CCSSCCHHHHHHHCC
T ss_pred HhhhccCCCCCeEEEeccC---ChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCC--CCccCCHHHHHHHCC
Confidence 441 12456899999999 57788999987322356999999999999999998877642 112223777887654
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhcc
Q 010136 342 AASGDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFK 411 (517)
Q Consensus 342 ~~~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~ 411 (517)
+++| ...-.+|+.|+..|.++++. .|+.+||..|+.++..
T Consensus 352 G~SG--ADi~~l~~eA~~~Air~~~~----------------------------~vt~~Df~~Al~~v~~ 391 (405)
T 4b4t_J 352 GCSG--ADVKGVCTEAGMYALRERRI----------------------------HVTQEDFELAVGKVMN 391 (405)
T ss_dssp SCCH--HHHHHHHHHHHHHHHHTTCS----------------------------BCCHHHHHHHHHHHHH
T ss_pred CCCH--HHHHHHHHHHHHHHHHcCCC----------------------------CcCHHHHHHHHHHHhC
Confidence 4444 23347899999998877655 7999999999987643
No 9
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.3e-23 Score=214.77 Aligned_cols=226 Identities=14% Similarity=0.137 Sum_probs=166.2
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHhhc---------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEe
Q 010136 121 TAPSTIVCREDEQKKVLEFCKKNLE---------EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSIN 191 (517)
Q Consensus 121 ~~p~~l~gRe~e~~~l~~~L~~~l~---------~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn 191 (517)
..++++.|.+++.++|.+.+.-.+. -..+.++|||||||||||++|++++.+++ ..++.++
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~----------~~~~~v~ 247 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG----------ANFIFSP 247 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT----------CEEEEEE
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhC----------CCEEEEe
Confidence 3445788999999999888755332 23467999999999999999999999875 5799999
Q ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC-----------chHHH
Q 010136 192 CTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD-----------RAVLH 260 (517)
Q Consensus 192 ~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~-----------~~~L~ 260 (517)
+..+.+.+. |. ....++.+|.. +....|+||||||+|.+...+ ...+.
T Consensus 248 ~s~l~sk~~-----------------Ge-se~~ir~~F~~---A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~ 306 (437)
T 4b4t_L 248 ASGIVDKYI-----------------GE-SARIIREMFAY---AKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLM 306 (437)
T ss_dssp GGGTCCSSS-----------------SH-HHHHHHHHHHH---HHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHH
T ss_pred hhhhccccc-----------------hH-HHHHHHHHHHH---HHhcCCceeeeecccccccccccCCCCcchHHHHHHH
Confidence 988755432 22 26677788873 345678999999999997542 12344
Q ss_pred HHhccC--CCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHH
Q 010136 261 DLFMLT--TFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCAR 338 (517)
Q Consensus 261 ~l~~~~--~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~ 338 (517)
.|+.+. ......++||++|| .++.++|++.+++.....|+|+.++.++..+||+..+..+.. ..+..++.+|+
T Consensus 307 ~lL~~lDg~~~~~~vivI~ATN---rp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~--~~d~dl~~lA~ 381 (437)
T 4b4t_L 307 ELLTQMDGFDNLGQTKIIMATN---RPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK--TGEFDFEAAVK 381 (437)
T ss_dssp HHHHHHHSSSCTTSSEEEEEES---STTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB--CSCCCHHHHHH
T ss_pred HHHHHhhcccCCCCeEEEEecC---CchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC--CcccCHHHHHH
Confidence 444431 22346789999999 578899999886444679999999999999999988876421 12233677777
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccC
Q 010136 339 KVAAASGDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKS 412 (517)
Q Consensus 339 ~~~~~~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~ 412 (517)
.+.+++| ...-.+|+.|+..|.++++. .|+.+||.+|+.++...
T Consensus 382 ~t~G~sG--ADi~~l~~eA~~~air~~~~----------------------------~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 382 MSDGFNG--ADIRNCATEAGFFAIRDDRD----------------------------HINPDDLMKAVRKVAEV 425 (437)
T ss_dssp TCCSCCH--HHHHHHHHHHHHHHHHTTCS----------------------------SBCHHHHHHHHHHHHHT
T ss_pred hCCCCCH--HHHHHHHHHHHHHHHHcCCC----------------------------CCCHHHHHHHHHHHHhc
Confidence 5444443 33447899999998877655 79999999999887654
No 10
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=8.6e-24 Score=215.99 Aligned_cols=224 Identities=16% Similarity=0.143 Sum_probs=163.5
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhc---------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeC
Q 010136 122 APSTIVCREDEQKKVLEFCKKNLE---------EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINC 192 (517)
Q Consensus 122 ~p~~l~gRe~e~~~l~~~L~~~l~---------~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~ 192 (517)
.++++.|.+++.++|.+.+...+. -..+.++|||||||||||++|++++.+++ ..++.+++
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~----------~~f~~v~~ 248 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN----------ATFLKLAA 248 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT----------CEEEEEEG
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhC----------CCEEEEeh
Confidence 344678888888888877544332 23477999999999999999999999875 57999999
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCc-----------hHHHH
Q 010136 193 TSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDR-----------AVLHD 261 (517)
Q Consensus 193 ~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~-----------~~L~~ 261 (517)
..+.+.+. |. ....++.+|.. +....|+||||||+|.+...+. ..+..
T Consensus 249 s~l~~~~v-----------------Ge-se~~ir~lF~~---A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~ 307 (434)
T 4b4t_M 249 PQLVQMYI-----------------GE-GAKLVRDAFAL---AKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLE 307 (434)
T ss_dssp GGGCSSCS-----------------SH-HHHHHHHHHHH---HHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHH
T ss_pred hhhhhccc-----------------ch-HHHHHHHHHHH---HHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHH
Confidence 88754332 22 26677888873 2356789999999999976531 23444
Q ss_pred HhccC--CCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChh-HHHHHHH
Q 010136 262 LFMLT--TFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQ-ALELCAR 338 (517)
Q Consensus 262 l~~~~--~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~-ai~~ia~ 338 (517)
|+.+. .....+++|||+|| .++.++|++.+++.....|+|+.++.++..+||+..+..+. ++++ .++.+|+
T Consensus 308 lL~~ldg~~~~~~ViVIaaTN---rp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~---~~~dvdl~~lA~ 381 (434)
T 4b4t_M 308 LLNQLDGFSSDDRVKVLAATN---RVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMT---TDDDINWQELAR 381 (434)
T ss_dssp HHHHHTTSCSSCSSEEEEECS---SCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSC---BCSCCCHHHHHH
T ss_pred HHHHhhccCCCCCEEEEEeCC---CchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCC---CCCcCCHHHHHH
Confidence 44442 12346799999999 57788999987422357999999999999999998887652 2222 3677777
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccC
Q 010136 339 KVAAASGDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKS 412 (517)
Q Consensus 339 ~~~~~~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~ 412 (517)
.+.+++| ...-.+|+.|+..|.++++. .|+.+||.+|+.++..+
T Consensus 382 ~t~G~sG--ADi~~l~~eA~~~a~r~~~~----------------------------~i~~~Df~~Al~~v~~~ 425 (434)
T 4b4t_M 382 STDEFNG--AQLKAVTVEAGMIALRNGQS----------------------------SVKHEDFVEGISEVQAR 425 (434)
T ss_dssp HCSSCCH--HHHHHHHHHHHHHHHHHTCS----------------------------SBCHHHHHHHHHSCSSS
T ss_pred hCCCCCH--HHHHHHHHHHHHHHHHcCCC----------------------------CcCHHHHHHHHHHHhCC
Confidence 5544443 33447899999998877655 79999999999987654
No 11
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=3.8e-23 Score=210.41 Aligned_cols=224 Identities=17% Similarity=0.170 Sum_probs=162.4
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHhh---------ccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEe
Q 010136 121 TAPSTIVCREDEQKKVLEFCKKNL---------EEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSIN 191 (517)
Q Consensus 121 ~~p~~l~gRe~e~~~l~~~L~~~l---------~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn 191 (517)
..++++.|.+++.++|.+.+.-.+ .-..+.++|||||||||||++|++++.+++ ..|+.++
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~----------~~fi~vs 275 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD----------ATFIRVI 275 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT----------CEEEEEE
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC----------CCeEEEE
Confidence 344567888888888887754322 124578999999999999999999999875 5799999
Q ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC-----------chHHH
Q 010136 192 CTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD-----------RAVLH 260 (517)
Q Consensus 192 ~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~-----------~~~L~ 260 (517)
+..+.+.+. |. ....++.+|.. +....|+||||||+|.+...+ +..+.
T Consensus 276 ~s~L~sk~v-----------------Ge-sek~ir~lF~~---Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~ 334 (467)
T 4b4t_H 276 GSELVQKYV-----------------GE-GARMVRELFEM---ARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTML 334 (467)
T ss_dssp GGGGCCCSS-----------------SH-HHHHHHHHHHH---HHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHH
T ss_pred hHHhhcccC-----------------CH-HHHHHHHHHHH---HHhcCCceEeecccccccccccCcCCCccHHHHHHHH
Confidence 988755332 22 26678888873 345678999999999998643 12333
Q ss_pred HHhcc--CCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHH
Q 010136 261 DLFML--TTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCAR 338 (517)
Q Consensus 261 ~l~~~--~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~ 338 (517)
.++.. .......++||++|| .++.+++++.+.......|+|+.++.+++.+||+..+..+.. -.+-.++.+|+
T Consensus 335 ~lL~~lDg~~~~~~ViVIaATN---rpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l--~~dvdl~~LA~ 409 (467)
T 4b4t_H 335 ELITQLDGFDPRGNIKVMFATN---RPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV--ERGIRWELISR 409 (467)
T ss_dssp HHHHHHHSSCCTTTEEEEEECS---CTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB--CSSCCHHHHHH
T ss_pred HHHHHhhccCCCCcEEEEeCCC---CcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC--CCCCCHHHHHH
Confidence 34333 123456899999999 577889999873223579999999999999999988876521 11223677777
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhc
Q 010136 339 KVAAASGDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTF 410 (517)
Q Consensus 339 ~~~~~~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~ 410 (517)
.+.+++| ...-.+|+.|+..|.++++. .|+.+||..|++++.
T Consensus 410 ~T~GfSG--ADI~~l~~eAa~~Air~~~~----------------------------~it~~Df~~Al~kV~ 451 (467)
T 4b4t_H 410 LCPNSTG--AELRSVCTEAGMFAIRARRK----------------------------VATEKDFLKAVDKVI 451 (467)
T ss_dssp HCCSCCH--HHHHHHHHHHHHHHHHHTCS----------------------------SBCHHHHHHHHHHHH
T ss_pred HCCCCCH--HHHHHHHHHHHHHHHHcCCC----------------------------ccCHHHHHHHHHHHh
Confidence 6544444 33347899999999887665 799999999998864
No 12
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.89 E-value=5.8e-21 Score=191.93 Aligned_cols=271 Identities=14% Similarity=0.146 Sum_probs=203.9
Q ss_pred CCCCCcHHHHHHHHHHHHHhhc-cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLE-EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIF 202 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~-~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~ 202 (517)
++++|++..++.+..++..... +....+++|+||||||||++++++++.+. ..++.++|........
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~----------~~~~~~~~~~~~~~~~-- 96 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMS----------ANIKTTAAPMIEKSGD-- 96 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTT----------CCEEEEEGGGCCSHHH--
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhC----------CCeEEecchhccchhH--
Confidence 4799999999999999887654 34567899999999999999999987753 3689999977643322
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCC--------------
Q 010136 203 SKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF-------------- 268 (517)
Q Consensus 203 ~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~-------------- 268 (517)
+...+. ....+.+|||||||.+....+..|+.+++....
T Consensus 97 ----------------------~~~~~~-----~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~ 149 (338)
T 3pfi_A 97 ----------------------LAAILT-----NLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIK 149 (338)
T ss_dssp ----------------------HHHHHH-----TCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCC
T ss_pred ----------------------HHHHHH-----hccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCcccccee
Confidence 333343 133457999999999987777777777765321
Q ss_pred -CCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCH
Q 010136 269 -PFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDM 347 (517)
Q Consensus 269 -~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~ 347 (517)
...++.+|+++|. ...+++.+.+| | ...+.|++++.+++..++...+.... ..+++++++.+++ ...|++
T Consensus 150 ~~~~~~~~i~atn~---~~~l~~~L~~R-~-~~~i~l~~~~~~e~~~il~~~~~~~~-~~~~~~~~~~l~~---~~~G~~ 220 (338)
T 3pfi_A 150 IDLPKFTLIGATTR---AGMLSNPLRDR-F-GMQFRLEFYKDSELALILQKAALKLN-KTCEEKAALEIAK---RSRSTP 220 (338)
T ss_dssp CCCCCCEEEEEESC---GGGSCHHHHTT-C-SEEEECCCCCHHHHHHHHHHHHHHTT-CEECHHHHHHHHH---TTTTCH
T ss_pred cCCCCeEEEEeCCC---ccccCHHHHhh-c-CEEeeCCCcCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHH---HHCcCH
Confidence 1124889999995 45578889998 5 35899999999999999998876432 3678999999887 578999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccChhHHHhccCCHHHHH
Q 010136 348 RKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSPVVDTIKSLPQHQQI 427 (517)
Q Consensus 348 R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~~~~~i~~L~~~~k~ 427 (517)
|.+.++++.++..+...+.. .|+.+++..++.....+ ...+...++.
T Consensus 221 r~l~~~l~~~~~~a~~~~~~----------------------------~i~~~~~~~~~~~~~~~-----~~~l~~~e~~ 267 (338)
T 3pfi_A 221 RIALRLLKRVRDFADVNDEE----------------------------IITEKRANEALNSLGVN-----ELGFDAMDLR 267 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCS----------------------------EECHHHHHHHHHHHTCC-----TTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCC----------------------------ccCHHHHHHHHHHhCCc-----ccCCCHHHHH
Confidence 99999999998877654433 69999999998875433 2357777788
Q ss_pred HHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCChHHHHHHHH-HHhhcCceeeccCC
Q 010136 428 LLCSAVKFFRGGKKDMTVGELNKSYMNICKTSLIPPVGTLEFFSMCR-VLHDQGVLKVGRDD 488 (517)
Q Consensus 428 iL~al~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~-~L~~~glI~~~~~~ 488 (517)
++.+++.. +...++..++ ++.++ ++...+.+.++ .|.+.|+|....+|
T Consensus 268 ~l~~l~~~---~~~~~~~~~~-------a~~lg---~~~~tl~~~l~~~l~~~gli~~~~~g 316 (338)
T 3pfi_A 268 YLELLTAA---KQKPIGLASI-------AAALS---EDENTIEDVIEPYLLANGYIERTAKG 316 (338)
T ss_dssp HHHHHHHS---CSCCBCHHHH-------HHHTT---CCHHHHHHTTHHHHHHTTSEEEETTE
T ss_pred HHHHHHHh---cCCCchHHHH-------HHHhC---CCHHHHHHHHhHHHHHcCceecCCCc
Confidence 88888765 3344566555 66664 46778888888 99999999865444
No 13
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.7e-22 Score=206.26 Aligned_cols=223 Identities=14% Similarity=0.141 Sum_probs=162.6
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhc---------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeC
Q 010136 122 APSTIVCREDEQKKVLEFCKKNLE---------EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINC 192 (517)
Q Consensus 122 ~p~~l~gRe~e~~~l~~~L~~~l~---------~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~ 192 (517)
.++++.|.+++.+.|.+.+...+. -..+.+++||||||||||++|++++.+++ ..++.+++
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~----------~~~~~v~~ 239 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK----------AAFIRVNG 239 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT----------CEEEEEEG
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC----------CCeEEEec
Confidence 345678999999888888754332 23467899999999999999999999875 57999999
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC-----------chHHHH
Q 010136 193 TSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD-----------RAVLHD 261 (517)
Q Consensus 193 ~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~-----------~~~L~~ 261 (517)
..+.+.+. |. ....++.+|.. +....|+||||||+|.+...+ +..+..
T Consensus 240 ~~l~~~~~-----------------Ge-~e~~ir~lF~~---A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~ 298 (428)
T 4b4t_K 240 SEFVHKYL-----------------GE-GPRMVRDVFRL---ARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIE 298 (428)
T ss_dssp GGTCCSSC-----------------SH-HHHHHHHHHHH---HHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHH
T ss_pred chhhcccc-----------------ch-hHHHHHHHHHH---HHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHH
Confidence 88754332 22 26678888873 335678999999999998642 124455
Q ss_pred HhccC--CCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeC-CCCHHHHHHHHHHHHhhhccCCCChhHHHHHHH
Q 010136 262 LFMLT--TFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFR-AYSKDQIIRILQERLMELSYIVFQPQALELCAR 338 (517)
Q Consensus 262 l~~~~--~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~-p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~ 338 (517)
|+.+. -....+++||++|| .++.++|++.+.+.....|.|+ +++.++...||+..+.++. .-++..++.+|+
T Consensus 299 lL~~ldg~~~~~~v~vI~aTN---~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~--l~~~~dl~~lA~ 373 (428)
T 4b4t_K 299 LLTQMDGFDQSTNVKVIMATN---RADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMS--LAPEADLDSLII 373 (428)
T ss_dssp HHHHHHHSCSSCSEEEEEEES---CSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSC--BCTTCCHHHHHH
T ss_pred HHHHhhCCCCCCCEEEEEecC---ChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCC--CCcccCHHHHHH
Confidence 55441 12346799999999 5778899998742234589996 6899999999998887642 112333777887
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhc
Q 010136 339 KVAAASGDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTF 410 (517)
Q Consensus 339 ~~~~~~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~ 410 (517)
.+.+++| ...-.+|+.|+..|.++++. .|+.+||.+|+....
T Consensus 374 ~t~G~sg--adi~~l~~eA~~~a~r~~~~----------------------------~i~~~d~~~A~~~~~ 415 (428)
T 4b4t_K 374 RNDSLSG--AVIAAIMQEAGLRAVRKNRY----------------------------VILQSDLEEAYATQV 415 (428)
T ss_dssp HTTTCCH--HHHHHHHHHHHHHHHHTTCS----------------------------SBCHHHHHHHHHHHS
T ss_pred HCCCCCH--HHHHHHHHHHHHHHHHCCCC----------------------------CCCHHHHHHHHHHhh
Confidence 6554444 33447899999998887665 799999999997754
No 14
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.87 E-value=2e-20 Score=187.58 Aligned_cols=273 Identities=14% Similarity=0.229 Sum_probs=198.1
Q ss_pred CCCCCcHHHHHHHHHHHHHhhc-cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLE-EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIF 202 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~-~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~ 202 (517)
+.++|++..++.+...+..... +....+++|+||||+||||+++.++..++ ..+.+.++........
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~----------~~~~~~sg~~~~~~~~-- 92 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ----------TNIHVTSGPVLVKQGD-- 92 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT----------CCEEEEETTTCCSHHH--
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC----------CCEEEEechHhcCHHH--
Confidence 4578888888888777766432 23457899999999999999999998874 2455666655433222
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCC--------------
Q 010136 203 SKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF-------------- 268 (517)
Q Consensus 203 ~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~-------------- 268 (517)
+...+.. .....|++|||+|.+....++.|+..++....
T Consensus 93 ----------------------l~~~~~~-----~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~ 145 (334)
T 1in4_A 93 ----------------------MAAILTS-----LERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIR 145 (334)
T ss_dssp ----------------------HHHHHHH-----CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC------------
T ss_pred ----------------------HHHHHHH-----ccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCccccccc
Confidence 2222221 11235899999999976556777765543210
Q ss_pred -CCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCH
Q 010136 269 -PFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDM 347 (517)
Q Consensus 269 -~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~ 347 (517)
.-..+.++++++. +..+.+.+++| |. ..+.|.+|+.+++.+||......+. ..++++++..+|+ ...|++
T Consensus 146 ~~l~~~~li~at~~---~~~Ls~~l~sR-~~-l~~~Ld~~~~~~l~~iL~~~~~~~~-~~~~~~~~~~ia~---~~~G~~ 216 (334)
T 1in4_A 146 IDIQPFTLVGATTR---SGLLSSPLRSR-FG-IILELDFYTVKELKEIIKRAASLMD-VEIEDAAAEMIAK---RSRGTP 216 (334)
T ss_dssp ---CCCEEEEEESC---GGGSCHHHHTT-CS-EEEECCCCCHHHHHHHHHHHHHHTT-CCBCHHHHHHHHH---TSTTCH
T ss_pred ccCCCeEEEEecCC---cccCCHHHHHh-cC-ceeeCCCCCHHHHHHHHHHHHHHcC-CCcCHHHHHHHHH---hcCCCh
Confidence 0124788887774 56788999999 64 4789999999999999998776432 4688999988887 578999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccChhHHHhccCCHHHHH
Q 010136 348 RKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSPVVDTIKSLPQHQQI 427 (517)
Q Consensus 348 R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~~~~~i~~L~~~~k~ 427 (517)
|.|+++|+.+...|..++.. .|+.+++.+|+.....+. .+++.+.+.
T Consensus 217 R~a~~ll~~~~~~a~~~~~~----------------------------~It~~~v~~al~~~~~~~-----~~l~~~~~~ 263 (334)
T 1in4_A 217 RIAIRLTKRVRDMLTVVKAD----------------------------RINTDIVLKTMEVLNIDD-----EGLDEFDRK 263 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCS----------------------------SBCHHHHHHHHHHHTCCT-----TCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCC----------------------------CcCHHHHHHHHHHhCCCc-----CCCCHHHHH
Confidence 99999999999888776544 799999999999875443 488999999
Q ss_pred HHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhcCceeeccCC
Q 010136 428 LLCSAVKFFRGGKKDMTVGELNKSYMNICKTSLIPPVGTLEFFSMCRVLHDQGVLKVGRDD 488 (517)
Q Consensus 428 iL~al~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~L~~~glI~~~~~~ 488 (517)
+|.+++...+++ ++.+. .+|...+..+.+..++.+. .|..+|+|.....|
T Consensus 264 ~l~~~~~~~~~~--~~~~~-------~l~~~~~~~~~t~~~~~~~--~l~~~g~i~~~~~g 313 (334)
T 1in4_A 264 ILKTIIEIYRGG--PVGLN-------ALAASLGVEADTLSEVYEP--YLLQAGFLARTPRG 313 (334)
T ss_dssp HHHHHHHHSTTC--CBCHH-------HHHHHHTSCHHHHHHHTHH--HHHHTTSEEEETTE
T ss_pred HHHHHHHHhCCC--cchHH-------HHHHHhCCCcchHHHHHHH--HHHHcCCeeccccc
Confidence 999888765433 34443 5577777766666666665 89999999876333
No 15
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.85 E-value=1.2e-20 Score=188.39 Aligned_cols=206 Identities=12% Similarity=0.116 Sum_probs=147.1
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhc--------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCC
Q 010136 123 PSTIVCREDEQKKVLEFCKKNLE--------EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTS 194 (517)
Q Consensus 123 p~~l~gRe~e~~~l~~~L~~~l~--------~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~ 194 (517)
.++++|.+...+.|.+.+...+. ...+.+++|+||||||||++++++++++. ..+++++|..
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~----------~~~~~v~~~~ 86 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN----------STFFSVSSSD 86 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT----------CEEEEEEHHH
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC----------CCEEEEchHH
Confidence 35689999999999888743221 12356899999999999999999998864 4789999854
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC-----------chHHHHHh
Q 010136 195 LTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD-----------RAVLHDLF 263 (517)
Q Consensus 195 ~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~-----------~~~L~~l~ 263 (517)
+.+.+ .......+..+|... ....+.||||||||.|.... +..|...+
T Consensus 87 l~~~~------------------~g~~~~~~~~~f~~a---~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l 145 (322)
T 3eie_A 87 LVSKW------------------MGESEKLVKQLFAMA---RENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQM 145 (322)
T ss_dssp HHTTT------------------GGGHHHHHHHHHHHH---HHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHH
T ss_pred Hhhcc------------------cchHHHHHHHHHHHH---HhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHh
Confidence 32111 012245566666532 24467899999999997643 13344444
Q ss_pred ccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHH
Q 010136 264 MLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAA 343 (517)
Q Consensus 264 ~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~ 343 (517)
+........++||+++| .++.+++.+.+| |. ..+.|++++.+++.+|++..+.... ..+++..++.+++.+..+
T Consensus 146 ~~~~~~~~~v~vi~atn---~~~~ld~al~~R-f~-~~i~~~~p~~~~r~~il~~~~~~~~-~~~~~~~l~~la~~t~g~ 219 (322)
T 3eie_A 146 NGVGNDSQGVLVLGATN---IPWQLDSAIRRR-FE-RRIYIPLPDLAARTTMFEINVGDTP-CVLTKEDYRTLGAMTEGY 219 (322)
T ss_dssp GGGGTSCCCEEEEEEES---CGGGSCHHHHHH-CC-EEEECCCCCHHHHHHHHHHHHTTCC-CCCCHHHHHHHHHTTTTC
T ss_pred ccccccCCceEEEEecC---ChhhCCHHHHcc-cC-eEEEeCCCCHHHHHHHHHHHhccCC-CCCCHHHHHHHHHHcCCC
Confidence 43333456899999999 467788999998 64 5899999999999999998887532 356788899888854322
Q ss_pred hCCHHHHHHHHHHHHHHHHHHHHh
Q 010136 344 SGDMRKALSVCRSAIEILEAEMRE 367 (517)
Q Consensus 344 ~Gd~R~al~ll~~A~~~a~~~~~~ 367 (517)
..+..-.+|+.|+..|.++...
T Consensus 220 --sg~di~~l~~~a~~~a~r~~~~ 241 (322)
T 3eie_A 220 --SGSDIAVVVKDALMQPIRKIQS 241 (322)
T ss_dssp --CHHHHHHHHHHHTTHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHHHHHhh
Confidence 3455558999999888887665
No 16
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.85 E-value=3.4e-20 Score=188.51 Aligned_cols=264 Identities=14% Similarity=0.145 Sum_probs=168.5
Q ss_pred cCcCCCCCCCCCcHHHHHHHHHHHHHhhccCC-CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCC
Q 010136 117 LHVSTAPSTIVCREDEQKKVLEFCKKNLEEEK-AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSL 195 (517)
Q Consensus 117 l~~~~~p~~l~gRe~e~~~l~~~L~~~l~~~~-~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~ 195 (517)
+.+.+.++.++|++...+.+...+.....+.. +.+++|+||||||||++++++++.+.. ...++.++|..+
T Consensus 37 ~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~--------~~~~~~~~~~~~ 108 (368)
T 3uk6_A 37 LEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP--------DTPFTAIAGSEI 108 (368)
T ss_dssp SCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS--------SCCEEEEEGGGG
T ss_pred cCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc--------cCCcccccchhh
Confidence 34455577899999998876655544333332 368999999999999999999998752 135788887552
Q ss_pred C----CHHHHHHHHHHHhCCC----------------------------CCCCCCCCHHHHHHHHHHhh----hc--cCC
Q 010136 196 T----NTSEIFSKILLKLQPR----------------------------KKLNGSTSPLQYLQNLYSQK----LH--SSV 237 (517)
Q Consensus 196 ~----s~~~i~~~i~~~l~~~----------------------------~~~~~~~~~~~~l~~~~~~~----~~--~~~ 237 (517)
. ....++...+....+. .....+. ....++..+... .. ...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~g~~~ 187 (368)
T 3uk6_A 109 FSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGE-IKSEVREQINAKVAEWREEGKAE 187 (368)
T ss_dssp SCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC--------CHHHHHHHHHHHHHHHHHTC--
T ss_pred hhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccc-cHHHHHHHHHHHHHHhhhhcccc
Confidence 2 3333444333331110 0000011 122333333221 00 011
Q ss_pred CceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEEC--------CCCcchhhcccccccCCCceEEEeCCCCH
Q 010136 238 MKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIAN--------AIDLADRFLPRLQSMNCKPLVVTFRAYSK 309 (517)
Q Consensus 238 ~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian--------~~~~~~~l~~~l~sr~~~~~~i~f~p~~~ 309 (517)
..+.||||||+|.|....++.|+.+++.. ...++++++.+ +.+.+..+++.+.+| | ..+.|+||+.
T Consensus 188 ~~~~vl~IDEi~~l~~~~~~~L~~~le~~---~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR-~--~~i~~~~~~~ 261 (368)
T 3uk6_A 188 IIPGVLFIDEVHMLDIESFSFLNRALESD---MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDR-L--LIVSTTPYSE 261 (368)
T ss_dssp -CBCEEEEESGGGSBHHHHHHHHHHTTCT---TCCEEEEEESCSEEECBTSSCEEETTCCHHHHTT-E--EEEEECCCCH
T ss_pred ccCceEEEhhccccChHHHHHHHHHhhCc---CCCeeeeecccceeeeeccCCCCcccCCHHHHhh-c--cEEEecCCCH
Confidence 12579999999999876677777777653 33555555332 122356678899998 7 5689999999
Q ss_pred HHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhh
Q 010136 310 DQIIRILQERLMELSYIVFQPQALELCARKVAAAS-GDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAAS 388 (517)
Q Consensus 310 ~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~-Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (517)
+++.+||..++... ...+++++++++++. .. |++|.++++|+.|...|..++..
T Consensus 262 ~e~~~il~~~~~~~-~~~~~~~~l~~l~~~---~~~G~~r~~~~ll~~a~~~A~~~~~~--------------------- 316 (368)
T 3uk6_A 262 KDTKQILRIRCEEE-DVEMSEDAYTVLTRI---GLETSLRYAIQLITAASLVCRKRKGT--------------------- 316 (368)
T ss_dssp HHHHHHHHHHHHHT-TCCBCHHHHHHHHHH---HHHSCHHHHHHHHHHHHHHHHHTTCS---------------------
T ss_pred HHHHHHHHHHHHHc-CCCCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHhCCC---------------------
Confidence 99999999988743 246899999999884 34 99999999999999988776654
Q ss_pred hhhccCccccHHHHHHHHHHhccChhHHHhccCCHHHHHHH
Q 010136 389 AFEFFNSQVRVDHMAVALSNTFKSPVVDTIKSLPQHQQILL 429 (517)
Q Consensus 389 ~~~~~~~~Vt~~~v~~a~~~~~~~~~~~~i~~L~~~~k~iL 429 (517)
.|+.+||.+|+....... ...+.+...++.+|
T Consensus 317 -------~It~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~ 348 (368)
T 3uk6_A 317 -------EVQVDDIKRVYSLFLDES--RSTQYMKEYQDAFL 348 (368)
T ss_dssp -------SBCHHHHHHHHHHSBCHH--HHHHHHC-------
T ss_pred -------CCCHHHHHHHHHHhcCHH--HHHHHHHHhhhhhh
Confidence 799999999998754322 12233444444444
No 17
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.84 E-value=5.1e-20 Score=186.04 Aligned_cols=206 Identities=13% Similarity=0.128 Sum_probs=144.3
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhc--------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCC
Q 010136 122 APSTIVCREDEQKKVLEFCKKNLE--------EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCT 193 (517)
Q Consensus 122 ~p~~l~gRe~e~~~l~~~L~~~l~--------~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~ 193 (517)
..++++|.+...+.|...+...+. ...+.+++|+||||||||++++++++++. ..+++++|.
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~----------~~~~~v~~~ 118 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN----------STFFSVSSS 118 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT----------CEEEEEEHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC----------CCEEEeeHH
Confidence 345689999999988888643221 12356899999999999999999999874 478999886
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC-----------chHHHHH
Q 010136 194 SLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD-----------RAVLHDL 262 (517)
Q Consensus 194 ~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~-----------~~~L~~l 262 (517)
.+.+. + .+.. ...+..+|... ....+.||||||+|.|.... ...|...
T Consensus 119 ~l~~~----------~-------~g~~-~~~~~~~f~~a---~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~ 177 (355)
T 2qp9_X 119 DLVSK----------W-------MGES-EKLVKQLFAMA---RENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQ 177 (355)
T ss_dssp HHHSC----------C----------C-HHHHHHHHHHH---HHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHH
T ss_pred HHhhh----------h-------cchH-HHHHHHHHHHH---HHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHH
Confidence 43111 0 1222 45566666521 23467899999999997542 2233344
Q ss_pred hccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHH
Q 010136 263 FMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAA 342 (517)
Q Consensus 263 ~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~ 342 (517)
++........++||+++|. ++.+++.+.+| |. ..+.|++++.+++.+||..++.... ..+++..++.+++..
T Consensus 178 l~~~~~~~~~v~vI~atn~---~~~ld~al~rR-f~-~~i~i~~P~~~~r~~il~~~l~~~~-~~~~~~~l~~la~~t-- 249 (355)
T 2qp9_X 178 MNGVGNDSQGVLVLGATNI---PWQLDSAIRRR-FE-RRIYIPLPDLAARTTMFEINVGDTP-SVLTKEDYRTLGAMT-- 249 (355)
T ss_dssp HHHCC---CCEEEEEEESC---GGGSCHHHHHT-CC-EEEECCCCCHHHHHHHHHHHHTTSC-BCCCHHHHHHHHHHT--
T ss_pred hhcccccCCCeEEEeecCC---cccCCHHHHcc-cC-EEEEeCCcCHHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHc--
Confidence 4433334568999999994 67788999997 63 5899999999999999998887542 246788899998854
Q ss_pred HhC-CHHHHHHHHHHHHHHHHHHHHh
Q 010136 343 ASG-DMRKALSVCRSAIEILEAEMRE 367 (517)
Q Consensus 343 ~~G-d~R~al~ll~~A~~~a~~~~~~ 367 (517)
.| ..+..-.+|+.|+..|.++...
T Consensus 250 -~G~sg~dl~~l~~~A~~~a~~~~~~ 274 (355)
T 2qp9_X 250 -EGYSGSDIAVVVKDALMQPIRKIQS 274 (355)
T ss_dssp -TTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44 4556668999999988877543
No 18
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.84 E-value=2.7e-20 Score=182.41 Aligned_cols=222 Identities=18% Similarity=0.213 Sum_probs=159.1
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHhhcc---------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEe
Q 010136 121 TAPSTIVCREDEQKKVLEFCKKNLEE---------EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSIN 191 (517)
Q Consensus 121 ~~p~~l~gRe~e~~~l~~~L~~~l~~---------~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn 191 (517)
+.+++++|.+++++.|..++...+.. ..+.+++|+||||||||++++++++.+. ..+++++
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~----------~~~~~v~ 83 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN----------ATFIRVV 83 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT----------CEEEEEE
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC----------CCEEEEe
Confidence 45567999999999999987664332 4577899999999999999999988763 4789999
Q ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC-----------chHHH
Q 010136 192 CTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD-----------RAVLH 260 (517)
Q Consensus 192 ~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~-----------~~~L~ 260 (517)
|..+...+. ......+...|... ....+.||||||+|.+..+. +..|.
T Consensus 84 ~~~~~~~~~------------------~~~~~~~~~~~~~~---~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~ 142 (285)
T 3h4m_A 84 GSELVKKFI------------------GEGASLVKDIFKLA---KEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLM 142 (285)
T ss_dssp GGGGCCCST------------------THHHHHHHHHHHHH---HHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHH
T ss_pred hHHHHHhcc------------------chHHHHHHHHHHHH---HHcCCeEEEEECHHHhcccCccccCCccHHHHHHHH
Confidence 876533211 11134455555421 23456899999999996432 35566
Q ss_pred HHhccC--CCCCCcEEEEEEECCCCcchhhcccccc--cCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHH
Q 010136 261 DLFMLT--TFPFSRFILIGIANAIDLADRFLPRLQS--MNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELC 336 (517)
Q Consensus 261 ~l~~~~--~~~~~~v~lI~ian~~~~~~~l~~~l~s--r~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~i 336 (517)
.+++.. .....++.||+++|. ++.+++.+.+ | | ...+.|++++.+++.+|+..++.... ...+..++.+
T Consensus 143 ~ll~~~~~~~~~~~~~vI~ttn~---~~~l~~~l~~~~R-f-~~~i~~~~p~~~~r~~il~~~~~~~~--~~~~~~~~~l 215 (285)
T 3h4m_A 143 QLLAEMDGFDARGDVKIIGATNR---PDILDPAILRPGR-F-DRIIEVPAPDEKGRLEILKIHTRKMN--LAEDVNLEEI 215 (285)
T ss_dssp HHHHHHHTTCSSSSEEEEEECSC---GGGBCHHHHSTTS-E-EEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHH
T ss_pred HHHHHhhCCCCCCCEEEEEeCCC---chhcCHHHcCCCc-C-CeEEEECCCCHHHHHHHHHHHHhcCC--CCCcCCHHHH
Confidence 666542 123468999999984 5677888887 5 4 35899999999999999998876542 2233346666
Q ss_pred HHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhcc
Q 010136 337 ARKVAAASG-DMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFK 411 (517)
Q Consensus 337 a~~~~~~~G-d~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~ 411 (517)
++. ..| ..+....+|+.|...|..++.. .|+.+|+.+|+..+..
T Consensus 216 ~~~---~~g~~~~~i~~l~~~a~~~a~~~~~~----------------------------~I~~~d~~~al~~~~~ 260 (285)
T 3h4m_A 216 AKM---TEGCVGAELKAICTEAGMNAIRELRD----------------------------YVTMDDFRKAVEKIME 260 (285)
T ss_dssp HHH---CTTCCHHHHHHHHHHHHHHHHHTTCS----------------------------SBCHHHHHHHHHHHHH
T ss_pred HHH---cCCCCHHHHHHHHHHHHHHHHHhccC----------------------------cCCHHHHHHHHHHHHh
Confidence 664 334 4566667899998888776654 7999999999988753
No 19
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.9e-19 Score=179.30 Aligned_cols=207 Identities=15% Similarity=0.128 Sum_probs=147.4
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhc------c--CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCC
Q 010136 123 PSTIVCREDEQKKVLEFCKKNLE------E--EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTS 194 (517)
Q Consensus 123 p~~l~gRe~e~~~l~~~L~~~l~------~--~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~ 194 (517)
.+++.|.++..+.|.+.+...+. + ..+.+++|+||||||||++++++++++.. ..++++++..
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~---------~~~~~i~~~~ 81 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---------STFFSISSSD 81 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS---------CEEEEEECCS
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC---------CcEEEEEhHH
Confidence 45689999998888887753222 1 23578999999999999999999988621 4789999987
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCc--------hHHHHH---h
Q 010136 195 LTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDR--------AVLHDL---F 263 (517)
Q Consensus 195 ~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~--------~~L~~l---~ 263 (517)
+.+.+ .+.. ...+..+|... ....+.||||||+|.+....+ ..+..+ +
T Consensus 82 l~~~~-----------------~g~~-~~~~~~lf~~a---~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l 140 (322)
T 1xwi_A 82 LVSKW-----------------LGES-EKLVKNLFQLA---RENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQM 140 (322)
T ss_dssp SCCSS-----------------CCSC-HHHHHHHHHHH---HHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHH
T ss_pred HHhhh-----------------hhHH-HHHHHHHHHHH---HhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHH
Confidence 64321 1233 56677777632 245678999999999975421 122223 3
Q ss_pred ccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHH
Q 010136 264 MLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAA 343 (517)
Q Consensus 264 ~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~ 343 (517)
+........++||+++|. ++.+++.+.+| |. ..+.|++++.++..+|++..+.... ..+++..++.+++.+.++
T Consensus 141 d~~~~~~~~v~vI~atn~---~~~ld~al~rR-f~-~~i~i~~P~~~~r~~il~~~l~~~~-~~l~~~~l~~la~~t~G~ 214 (322)
T 1xwi_A 141 QGVGVDNDGILVLGATNI---PWVLDSAIRRR-FE-KRIYIPLPEPHARAAMFKLHLGTTQ-NSLTEADFRELGRKTDGY 214 (322)
T ss_dssp HCSSSCCTTEEEEEEESC---TTTSCHHHHHT-CC-EEEECCCCCHHHHHHHHHHHHTTCC-BCCCHHHHHHHHHTCTTC
T ss_pred hcccccCCCEEEEEecCC---cccCCHHHHhh-cC-eEEEeCCcCHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHcCCC
Confidence 322234578999999995 56788999988 63 5899999999999999998887542 246788888888753322
Q ss_pred hCCHHHHHHHHHHHHHHHHHHHHh
Q 010136 344 SGDMRKALSVCRSAIEILEAEMRE 367 (517)
Q Consensus 344 ~Gd~R~al~ll~~A~~~a~~~~~~ 367 (517)
..+..-.+|+.|+..|.++...
T Consensus 215 --sgadl~~l~~~A~~~a~r~~~~ 236 (322)
T 1xwi_A 215 --SGADISIIVRDALMQPVRKVQS 236 (322)
T ss_dssp --CHHHHHHHHHHHHTHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHHHHHHh
Confidence 2445557899999888877653
No 20
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.83 E-value=3.2e-19 Score=177.98 Aligned_cols=274 Identities=16% Similarity=0.175 Sum_probs=196.7
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhcc-CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHH
Q 010136 123 PSTIVCREDEQKKVLEFCKKNLEE-EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEI 201 (517)
Q Consensus 123 p~~l~gRe~e~~~l~~~L~~~l~~-~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i 201 (517)
.+.++|++..++.+..++...... ....+++|+||||||||++++++++.+. ..+++++|........+
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~----------~~~~~~~~~~~~~~~~l 80 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG----------VNLRVTSGPAIEKPGDL 80 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT----------CCEEEECTTTCCSHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC----------CCEEEEeccccCChHHH
Confidence 457999999999999988765432 3457899999999999999999988763 36889999887554332
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCC-------------
Q 010136 202 FSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF------------- 268 (517)
Q Consensus 202 ~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~------------- 268 (517)
...|.. ....+.+|||||+|.+....+..|..+++....
T Consensus 81 ------------------------~~~l~~----~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~ 132 (324)
T 1hqc_A 81 ------------------------AAILAN----SLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTI 132 (324)
T ss_dssp ------------------------HHHHTT----TCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCE
T ss_pred ------------------------HHHHHH----hccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhcccccccccc
Confidence 222321 123456999999999987667777777664210
Q ss_pred --CCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCC
Q 010136 269 --PFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGD 346 (517)
Q Consensus 269 --~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd 346 (517)
....+.+|+++|. ...+.+.+.+| +. ..+.|++++.+++..++...+.... ..+++++++.+++. ..|+
T Consensus 133 ~~~~~~~~~i~~t~~---~~~~~~~l~~R-~~-~~i~l~~~~~~e~~~~l~~~~~~~~-~~~~~~~~~~l~~~---~~G~ 203 (324)
T 1hqc_A 133 RLELPRFTLIGATTR---PGLITAPLLSR-FG-IVEHLEYYTPEELAQGVMRDARLLG-VRITEEAALEIGRR---SRGT 203 (324)
T ss_dssp EEECCCCEEEEEESC---CSSCSCSTTTT-CS-CEEECCCCCHHHHHHHHHHHHHTTT-CCCCHHHHHHHHHH---SCSC
T ss_pred ccCCCCEEEEEeCCC---cccCCHHHHhc-cc-EEEecCCCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHH---ccCC
Confidence 1135789999995 35567888888 53 4899999999999999998876432 36889999988774 5799
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccChhHHHhccCCHHHH
Q 010136 347 MRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSPVVDTIKSLPQHQQ 426 (517)
Q Consensus 347 ~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~~~~~i~~L~~~~k 426 (517)
+|.+.++++.+...+...+.. .|+.+++..++...... ...++..++
T Consensus 204 ~r~l~~~l~~~~~~a~~~~~~----------------------------~i~~~~~~~~~~~~~~~-----~~~l~~~e~ 250 (324)
T 1hqc_A 204 MRVAKRLFRRVRDFAQVAGEE----------------------------VITRERALEALAALGLD-----ELGLEKRDR 250 (324)
T ss_dssp HHHHHHHHHHHTTTSTTTSCS----------------------------CCCHHHHHHHHHHHTCC-----TTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCC----------------------------CCCHHHHHHHHHHhccc-----ccCCCHHHH
Confidence 999999998887655432222 68999999988775432 246888888
Q ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH-HhhcCceeeccCC
Q 010136 427 ILLCSAVKFFRGGKKDMTVGELNKSYMNICKTSLIPPVGTLEFFSMCRV-LHDQGVLKVGRDD 488 (517)
Q Consensus 427 ~iL~al~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~-L~~~glI~~~~~~ 488 (517)
.++.+++.... ...++...+ ++.++ ++...++..+.. |.+.|+|.....|
T Consensus 251 ~~i~~~~~~~~--g~~~~~~~~-------a~~lg---i~~~tl~~~l~~~~i~~~li~~~~~g 301 (324)
T 1hqc_A 251 EILEVLILRFG--GGPVGLATL-------ATALS---EDPGTLEEVHEPYLIRQGLLKRTPRG 301 (324)
T ss_dssp HHHHHHHHHSC--SSCCCHHHH-------HHHTT---SCHHHHHHHTHHHHHHTTSEEEETTE
T ss_pred HHHHHHHHHhc--CCCchHHHH-------HHHhC---CCHHHHHHHHhHHHHHhcchhcCCcc
Confidence 88887765432 223455444 55554 466777776555 8899999755433
No 21
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.83 E-value=1.9e-19 Score=184.40 Aligned_cols=235 Identities=17% Similarity=0.166 Sum_probs=154.3
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhc--------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCC
Q 010136 123 PSTIVCREDEQKKVLEFCKKNLE--------EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTS 194 (517)
Q Consensus 123 p~~l~gRe~e~~~l~~~L~~~l~--------~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~ 194 (517)
.++++|++..++.|..++..... ...+.++||+||||||||++|++++.++. ..+++++|..
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~----------~~~~~v~~~~ 183 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN----------ATFFNISAAS 183 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT----------CEEEEECSCC
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc----------CcEEEeeHHH
Confidence 45799999999999998754332 22467999999999999999999987753 4799999988
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCc--------h---HHHHHh
Q 010136 195 LTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDR--------A---VLHDLF 263 (517)
Q Consensus 195 ~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~--------~---~L~~l~ 263 (517)
+.+.+. +.. ...+..+|... ....+.||||||||.|..... . .|...+
T Consensus 184 l~~~~~-----------------g~~-~~~~~~~~~~a---~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l 242 (389)
T 3vfd_A 184 LTSKYV-----------------GEG-EKLVRALFAVA---RELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEF 242 (389)
T ss_dssp C------------------------C-HHHHHHHHHHH---HHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHH
T ss_pred hhcccc-----------------chH-HHHHHHHHHHH---HhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHh
Confidence 755332 222 34455566522 234568999999999954321 1 222222
Q ss_pred c-cCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHH
Q 010136 264 M-LTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAA 342 (517)
Q Consensus 264 ~-~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~ 342 (517)
+ .......+++||+++|. ++.+++.+.+| |. ..+.|++++.+++.+||...+... ...++++.++.+++.
T Consensus 243 ~~~~~~~~~~v~vI~atn~---~~~l~~~l~~R-~~-~~i~i~~p~~~~r~~il~~~~~~~-~~~l~~~~~~~la~~--- 313 (389)
T 3vfd_A 243 DGVQSAGDDRVLVMGATNR---PQELDEAVLRR-FI-KRVYVSLPNEETRLLLLKNLLCKQ-GSPLTQKELAQLARM--- 313 (389)
T ss_dssp HHHC-----CEEEEEEESC---GGGCCHHHHTT-CC-EEEECCCCCHHHHHHHHHHHHTTS-CCCSCHHHHHHHHHH---
T ss_pred hcccccCCCCEEEEEecCC---chhcCHHHHcC-cc-eEEEcCCcCHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHH---
Confidence 2 22234568999999994 66788999998 63 479999999999999999887643 236788888888774
Q ss_pred HhCCHHHHH-HHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccCh
Q 010136 343 ASGDMRKAL-SVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSP 413 (517)
Q Consensus 343 ~~Gd~R~al-~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~ 413 (517)
..|..+.++ .+|+.|+..+.++........ .... ....|+.+||..++..+..+.
T Consensus 314 ~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~------~~~~----------~~~~i~~~d~~~al~~~~~s~ 369 (389)
T 3vfd_A 314 TDGYSGSDLTALAKDAALGPIRELKPEQVKN------MSAS----------EMRNIRLSDFTESLKKIKRSV 369 (389)
T ss_dssp TTTCCHHHHHHHHHHHTTHHHHTSCCC---C------CSSS----------CCCCCCHHHHHHHHHHCCCSS
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhhhhhhhhc------cchh----------hcCCcCHHHHHHHHHHcCCCC
Confidence 566655444 677888877665432100000 0000 011699999999998876653
No 22
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.82 E-value=1.5e-19 Score=174.70 Aligned_cols=223 Identities=14% Similarity=0.132 Sum_probs=145.8
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhcc--------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCC
Q 010136 122 APSTIVCREDEQKKVLEFCKKNLEE--------EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCT 193 (517)
Q Consensus 122 ~p~~l~gRe~e~~~l~~~L~~~l~~--------~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~ 193 (517)
..++++|.++..+.+.+++...... ..+.+++|+||||||||++++++++++. ..+++++|.
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~----------~~~~~~~~~ 73 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ----------VPFLAMAGA 73 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT----------CCEEEEETT
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC----------CCEEEechH
Confidence 3567899999999888876542211 3466899999999999999999998763 468999998
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhccc------------CchHHHH
Q 010136 194 SLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITR------------DRAVLHD 261 (517)
Q Consensus 194 ~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~------------~~~~L~~ 261 (517)
.+.+.+ .......+..+|.... ...+.||||||+|.+... .+..|..
T Consensus 74 ~~~~~~------------------~~~~~~~~~~~~~~a~---~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ 132 (262)
T 2qz4_A 74 EFVEVI------------------GGLGAARVRSLFKEAR---ARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQ 132 (262)
T ss_dssp TTSSSS------------------TTHHHHHHHHHHHHHH---HTCSEEEEEECC-------------------CHHHHH
T ss_pred HHHhhc------------------cChhHHHHHHHHHHHH---hcCCeEEEEeCcchhhccccccccCccchhHHHHHHH
Confidence 764321 1112344555565321 235789999999999532 2445566
Q ss_pred HhccC--CCCCCcEEEEEEECCCCcchhhcccccc--cCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChh-HHHHH
Q 010136 262 LFMLT--TFPFSRFILIGIANAIDLADRFLPRLQS--MNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQ-ALELC 336 (517)
Q Consensus 262 l~~~~--~~~~~~v~lI~ian~~~~~~~l~~~l~s--r~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~-ai~~i 336 (517)
++... .....++++|+++|. ++.+++.+.+ | | ...+.|++++.++..+|++..+..... ..+.+ .++.+
T Consensus 133 ll~~~~~~~~~~~~~vi~~tn~---~~~ld~~l~~~~R-~-~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~~~~~~~l 206 (262)
T 2qz4_A 133 LLVEMDGMGTTDHVIVLASTNR---ADILDGALMRPGR-L-DRHVFIDLPTLQERREIFEQHLKSLKL-TQSSTFYSQRL 206 (262)
T ss_dssp HHHHHHTCCTTCCEEEEEEESC---GGGGGSGGGSTTS-C-CEEEECCSCCHHHHHHHHHHHHHHTTC-CBTHHHHHHHH
T ss_pred HHHHhhCcCCCCCEEEEecCCC---hhhcCHHHhcCCc-C-CeEEEeCCcCHHHHHHHHHHHHHhCCC-CcchhhHHHHH
Confidence 65542 123458999999994 6677888887 6 5 368999999999999999998875432 22222 24555
Q ss_pred HHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccC
Q 010136 337 ARKVAAASGD-MRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKS 412 (517)
Q Consensus 337 a~~~~~~~Gd-~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~ 412 (517)
++. ..|. .+....+|+.|+..|..++.. .|+.+|+..|+.++..+
T Consensus 207 ~~~---~~g~~~~~l~~l~~~a~~~a~~~~~~----------------------------~i~~~d~~~a~~~~~~~ 252 (262)
T 2qz4_A 207 AEL---TPGFSGADIANICNEAALHAAREGHT----------------------------SVHTLNFEYAVERVLAG 252 (262)
T ss_dssp HHT---CTTCCHHHHHHHHHHHHTC------------------------------------CCBCCHHHHHHHHHHH
T ss_pred HHH---CCCCCHHHHHHHHHHHHHHHHHcCCC----------------------------CCCHHHHHHHHHHhccC
Confidence 553 3442 456667888888877766554 79999999999887543
No 23
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.82 E-value=1.7e-18 Score=172.32 Aligned_cols=273 Identities=17% Similarity=0.240 Sum_probs=183.8
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFS 203 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~ 203 (517)
+.++|++..++.+..++.. +..++++|+||||+|||++++.+++.+..... ...++++++....+...+ .
T Consensus 21 ~~~~g~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~-----~~~~~~~~~~~~~~~~~i-~ 90 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKD----GNMPHMIISGMPGIGKTTSVHCLAHELLGRSY-----ADGVLELNASDDRGIDVV-R 90 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHS----CCCCCEEEECSTTSSHHHHHHHHHHHHHGGGH-----HHHEEEECTTSCCSHHHH-H
T ss_pred HHHHCCHHHHHHHHHHHHc----CCCCeEEEECcCCCCHHHHHHHHHHHhcCCcc-----cCCEEEecCccccChHHH-H
Confidence 5789999998888777653 45556999999999999999999998753110 035889998775443332 1
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCCC
Q 010136 204 KILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAID 283 (517)
Q Consensus 204 ~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~ 283 (517)
.+ +..+......-...++.||||||+|.+....++.|..+++.+ ...+.+|+++|.
T Consensus 91 ~~-------------------~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~---~~~~~~il~~~~-- 146 (323)
T 1sxj_B 91 NQ-------------------IKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELY---SNSTRFAFACNQ-- 146 (323)
T ss_dssp TH-------------------HHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHT---TTTEEEEEEESC--
T ss_pred HH-------------------HHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhcc---CCCceEEEEeCC--
Confidence 11 111111000001234789999999999776666677776653 346777777884
Q ss_pred cchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 010136 284 LADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRSAIEILEA 363 (517)
Q Consensus 284 ~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~~a~~ 363 (517)
...+.+.+.+| + ..+.|.|++.+++.+++..++... ...+++++++.+++ ...||+|.|+++++.+...
T Consensus 147 -~~~l~~~l~sr-~--~~i~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~l~~---~~~G~~r~a~~~l~~~~~~--- 215 (323)
T 1sxj_B 147 -SNKIIEPLQSQ-C--AILRYSKLSDEDVLKRLLQIIKLE-DVKYTNDGLEAIIF---TAEGDMRQAINNLQSTVAG--- 215 (323)
T ss_dssp -GGGSCHHHHTT-S--EEEECCCCCHHHHHHHHHHHHHHH-TCCBCHHHHHHHHH---HHTTCHHHHHHHHHHHHHH---
T ss_pred -hhhchhHHHhh-c--eEEeecCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHH---HcCCCHHHHHHHHHHHHhc---
Confidence 56778899998 6 599999999999999999887642 23678999988877 4689999999999876521
Q ss_pred HHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccChhHHHhccCCHHHHHHHHHHHH-HHhcCCCC
Q 010136 364 EMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSPVVDTIKSLPQHQQILLCSAVK-FFRGGKKD 442 (517)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~~~~~i~~L~~~~k~iL~al~~-l~~~~~~~ 442 (517)
.. .|+.++|.+++.......+.+.+.. ... ..++..+.. +.. ..
T Consensus 216 --~~----------------------------~i~~~~v~~~~~~~~~~~i~~~~~~-~~~-~~~l~~l~~dl~~---~g 260 (323)
T 1sxj_B 216 --HG----------------------------LVNADNVFKIVDSPHPLIVKKMLLA-SNL-EDSIQILRTDLWK---KG 260 (323)
T ss_dssp --HS----------------------------SBCHHHHHHHHTSCCHHHHHHHHSC-SSH-HHHHHHHHHTTTT---TT
T ss_pred --CC----------------------------CcCHHHHHHHHCCCCHHHHHHHHhc-CCH-HHHHHHHHHHHHH---cC
Confidence 12 5888888888765544444455555 222 234443443 332 23
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhh
Q 010136 443 MTVGELNKSYMNICKTSLIPPVGTLEFFSMCRVLHD 478 (517)
Q Consensus 443 ~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~L~~ 478 (517)
.+..++...|..++..+. ..+...+..+++.|.+
T Consensus 261 ~~~~~i~~~l~~~~~~l~--~~~~~~l~~~l~~l~~ 294 (323)
T 1sxj_B 261 YSSIDIVTTSFRVTKNLA--QVKESVRLEMIKEIGL 294 (323)
T ss_dssp CCHHHHHHHHHHHHHTCT--TSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcc--cCCHHHHHHHHHHHHH
Confidence 577788888888887653 2455556666655544
No 24
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.82 E-value=1.5e-18 Score=162.72 Aligned_cols=208 Identities=20% Similarity=0.266 Sum_probs=154.1
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFS 203 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~ 203 (517)
+.++|++++++.+..++.. ...++++|+||||||||++++.+++.+.... . ...++.++|....+...+..
T Consensus 17 ~~~~g~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~ 87 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVER----KNIPHLLFSGPPGTGKTATAIALARDLFGEN----W-RDNFIEMNASDERGIDVVRH 87 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHT----TCCCCEEEECSTTSSHHHHHHHHHHHHHGGG----G-GGGEEEEETTCTTCHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhC----CCCCeEEEECCCCCCHHHHHHHHHHHHhccc----c-ccceEEeccccccChHHHHH
Confidence 4689999999988888764 3455699999999999999999998875321 1 13588999987655444322
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCCC
Q 010136 204 KILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAID 283 (517)
Q Consensus 204 ~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~ 283 (517)
.+ ...... .......+.||||||+|.+....++.|..+++.. ...+.+|+++|.
T Consensus 88 ~~--------------------~~~~~~-~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~---~~~~~~i~~~~~-- 141 (226)
T 2chg_A 88 KI--------------------KEFART-APIGGAPFKIIFLDEADALTADAQAALRRTMEMY---SKSCRFILSCNY-- 141 (226)
T ss_dssp HH--------------------HHHHTS-CCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHT---TTTEEEEEEESC--
T ss_pred HH--------------------HHHhcc-cCCCccCceEEEEeChhhcCHHHHHHHHHHHHhc---CCCCeEEEEeCC--
Confidence 22 111110 0011356789999999999776667777777653 346777888884
Q ss_pred cchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 010136 284 LADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRSAIEILEA 363 (517)
Q Consensus 284 ~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~~a~~ 363 (517)
...+.+.+.+| + ..+.|+|++.+++.+++..++.... ..+++++++.+++ ...|++|.++++++.++..+
T Consensus 142 -~~~~~~~l~~r-~--~~i~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~---~~~g~~r~l~~~l~~~~~~~-- 211 (226)
T 2chg_A 142 -VSRIIEPIQSR-C--AVFRFKPVPKEAMKKRLLEICEKEG-VKITEDGLEALIY---ISGGDFRKAINALQGAAAIG-- 211 (226)
T ss_dssp -GGGSCHHHHTT-S--EEEECCCCCHHHHHHHHHHHHHHHT-CCBCHHHHHHHHH---HHTTCHHHHHHHHHHHHHTC--
T ss_pred -hhhcCHHHHHh-C--ceeecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHH---HcCCCHHHHHHHHHHHHhcC--
Confidence 46678888888 6 5899999999999999998876432 3588999988876 57899999999999887543
Q ss_pred HHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHH
Q 010136 364 EMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALS 407 (517)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~ 407 (517)
. .|+.+||.+++.
T Consensus 212 ---~----------------------------~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 ---E----------------------------VVDADTIYQITA 224 (226)
T ss_dssp ---S----------------------------CBCHHHHHHHHH
T ss_pred ---c----------------------------eecHHHHHHHhc
Confidence 2 799999999875
No 25
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.81 E-value=1.4e-18 Score=167.51 Aligned_cols=220 Identities=15% Similarity=0.177 Sum_probs=156.7
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhc--------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCC
Q 010136 122 APSTIVCREDEQKKVLEFCKKNLE--------EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCT 193 (517)
Q Consensus 122 ~p~~l~gRe~e~~~l~~~L~~~l~--------~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~ 193 (517)
..++++|.+...+.+...+..... ...+.+++|+||||||||+++++++..+. ..+++++|.
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~----------~~~~~i~~~ 79 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK----------VPFFTISGS 79 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT----------CCEEEECSC
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC----------CCEEEEeHH
Confidence 446799999999888877654221 12366899999999999999999988763 358999998
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCc-----------hHHHHH
Q 010136 194 SLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDR-----------AVLHDL 262 (517)
Q Consensus 194 ~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~-----------~~L~~l 262 (517)
.+.+.+ .+.. ...+..+|... ....+.++||||+|.+....+ ..+..+
T Consensus 80 ~~~~~~-----------------~~~~-~~~~~~~~~~a---~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~l 138 (257)
T 1lv7_A 80 DFVEMF-----------------VGVG-ASRVRDMFEQA---KKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQM 138 (257)
T ss_dssp SSTTSC-----------------CCCC-HHHHHHHHHHH---HTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHH
T ss_pred HHHHHh-----------------hhhh-HHHHHHHHHHH---HHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHH
Confidence 764321 1222 45566666532 234578999999999976432 233444
Q ss_pred hccC--CCCCCcEEEEEEECCCCcchhhcccccc--cCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChh-HHHHHH
Q 010136 263 FMLT--TFPFSRFILIGIANAIDLADRFLPRLQS--MNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQ-ALELCA 337 (517)
Q Consensus 263 ~~~~--~~~~~~v~lI~ian~~~~~~~l~~~l~s--r~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~-ai~~ia 337 (517)
+... .....++++|+++|. ++.+++++.+ | | ...+.|++++.++..+|++..+... .+.++ .+..++
T Consensus 139 l~~l~~~~~~~~~~vI~~tn~---~~~l~~~l~r~~r-f-~~~i~i~~P~~~~r~~il~~~~~~~---~l~~~~~~~~la 210 (257)
T 1lv7_A 139 LVEMDGFEGNEGIIVIAATNR---PDVLDPALLRPGR-F-DRQVVVGLPDVRGREQILKVHMRRV---PLAPDIDAAIIA 210 (257)
T ss_dssp HHHHHTCCSSSCEEEEEEESC---TTTSCGGGGSTTS-S-CEEEECCCCCHHHHHHHHHHHHTTS---CBCTTCCHHHHH
T ss_pred HHHhhCcccCCCEEEEEeeCC---chhCCHHHcCCCc-C-CeEEEeCCCCHHHHHHHHHHHHhcC---CCCccccHHHHH
Confidence 3321 123467999999995 4567788877 4 4 3589999999999999999887654 23333 355665
Q ss_pred HHHHHHhC-CHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhcc
Q 010136 338 RKVAAASG-DMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFK 411 (517)
Q Consensus 338 ~~~~~~~G-d~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~ 411 (517)
. ...| +.|...++|+.|...|..++.. .|+.+|+.+|+..+..
T Consensus 211 ~---~~~G~~~~dl~~l~~~a~~~a~~~~~~----------------------------~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 211 R---GTPGFSGADLANLVNEAALFAARGNKR----------------------------VVSMVEFEKAKDKIMM 254 (257)
T ss_dssp H---TCTTCCHHHHHHHHHHHHHHHHHTTCS----------------------------SBCHHHHHHHHHHHTT
T ss_pred H---HcCCCCHHHHHHHHHHHHHHHHHhCCC----------------------------cccHHHHHHHHHHHhc
Confidence 5 4678 8999999999999888776544 7999999999988653
No 26
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.81 E-value=7.8e-19 Score=183.42 Aligned_cols=133 Identities=13% Similarity=0.168 Sum_probs=105.2
Q ss_pred EEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECC----------CCcchhhcccccccCCCceEEEeCCCCHH
Q 010136 241 MLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANA----------IDLADRFLPRLQSMNCKPLVVTFRAYSKD 310 (517)
Q Consensus 241 ~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~----------~~~~~~l~~~l~sr~~~~~~i~f~p~~~~ 310 (517)
.|+||||+|.|....++.|+..++.+ ..++++++ +|. +..+..+.+.++|| | ..+.|+||+.+
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~---~~~~~il~-tn~~~~~i~~~~~~~~~~~l~~~i~sR-~--~~~~~~~~~~~ 369 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESS---IAPIVIFA-SNRGNCVIRGTEDITSPHGIPLDLLDR-V--MIIRTMLYTPQ 369 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTST---TCCEEEEE-ECCSEEECBTTSSCEEETTCCHHHHTT-E--EEEECCCCCHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhcc---CCCEEEEe-cCCccccccccccccccccCChhHHhh-c--ceeeCCCCCHH
Confidence 59999999999876677777777654 33454444 432 33566788999999 7 56899999999
Q ss_pred HHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhh
Q 010136 311 QIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAF 390 (517)
Q Consensus 311 e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (517)
++.+||..++... ...+++++++++++.. ..|++|.|+.+|+.|..+|..++..
T Consensus 370 e~~~iL~~~~~~~-~~~~~~~~~~~i~~~a--~~g~~r~a~~ll~~a~~~A~~~~~~----------------------- 423 (456)
T 2c9o_A 370 EMKQIIKIRAQTE-GINISEEALNHLGEIG--TKTTLRYSVQLLTPANLLAKINGKD----------------------- 423 (456)
T ss_dssp HHHHHHHHHHHHH-TCCBCHHHHHHHHHHH--HHSCHHHHHHTHHHHHHHHHHTTCS-----------------------
T ss_pred HHHHHHHHHHHHh-CCCCCHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHHhhcCCC-----------------------
Confidence 9999999988632 2468999999998842 2699999999999999999877765
Q ss_pred hccCccccHHHHHHHHHHhcc
Q 010136 391 EFFNSQVRVDHMAVALSNTFK 411 (517)
Q Consensus 391 ~~~~~~Vt~~~v~~a~~~~~~ 411 (517)
.|+.+||.+|+.-+..
T Consensus 424 -----~v~~~~v~~~~~~~~d 439 (456)
T 2c9o_A 424 -----SIEKEHVEEISELFYD 439 (456)
T ss_dssp -----SBCHHHHHHHHHHSCC
T ss_pred -----ccCHHHHHHHHHHhcC
Confidence 8999999999877643
No 27
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.80 E-value=2e-19 Score=178.11 Aligned_cols=238 Identities=17% Similarity=0.209 Sum_probs=159.5
Q ss_pred CCCCCcHHHHHHHHHHHHHhhc----------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCC
Q 010136 124 STIVCREDEQKKVLEFCKKNLE----------EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCT 193 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~----------~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~ 193 (517)
+.++|++..++.+...+..... ...+.+++|+||||||||++++++++.+. ..+++++|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~----------~~~~~i~~~ 84 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN----------APFIKVEAT 84 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT----------CCEEEEEGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC----------CCEEEEcch
Confidence 3589999999999988766321 23577999999999999999999998873 368999998
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhh--hccCCCceEEEEEeCcchhcccC------------chHH
Q 010136 194 SLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQK--LHSSVMKMMLIIADELDYLITRD------------RAVL 259 (517)
Q Consensus 194 ~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~vI~iDEiD~L~~~~------------~~~L 259 (517)
.+.... ..+......+..++... .......+.||||||+|.+.... ++.|
T Consensus 85 ~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~L 148 (310)
T 1ofh_A 85 KFTEVG----------------YVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDL 148 (310)
T ss_dssp GGSSCC----------------SGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHH
T ss_pred hcccCC----------------ccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHH
Confidence 764310 00111112233333310 00001235799999999998765 5667
Q ss_pred HHHhccCC-------CCCCcEEEEEEECC-CCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhh--------
Q 010136 260 HDLFMLTT-------FPFSRFILIGIANA-IDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMEL-------- 323 (517)
Q Consensus 260 ~~l~~~~~-------~~~~~v~lI~ian~-~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~-------- 323 (517)
..+++... ....++++|+++|. ...+..+++.+.+| |. ..+.|+||+.+++.+|+..++..+
T Consensus 149 l~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R-~~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~ 226 (310)
T 1ofh_A 149 LPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGR-LP-IRVELTALSAADFERILTEPHASLTEQYKALM 226 (310)
T ss_dssp HHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHT-CC-EEEECCCCCHHHHHHHHHSSTTCHHHHHHHHH
T ss_pred HHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhh-CC-ceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77665421 12347888887653 22456788999999 64 579999999999999998422100
Q ss_pred --c--cCCCChhHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccC
Q 010136 324 --S--YIVFQPQALELCARKVAAA-----SGDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFN 394 (517)
Q Consensus 324 --~--~~~~~~~ai~~ia~~~~~~-----~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (517)
. ...+++++++++++..... .|++|.+.++|+.++..+..+..... +..
T Consensus 227 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~--------~~~-------------- 284 (310)
T 1ofh_A 227 ATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMN--------GQT-------------- 284 (310)
T ss_dssp HHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCT--------TCE--------------
T ss_pred HhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCcccc--------CCE--------------
Confidence 1 1258999999999865433 69999999999998765443322100 000
Q ss_pred ccccHHHHHHHHHHhcc
Q 010136 395 SQVRVDHMAVALSNTFK 411 (517)
Q Consensus 395 ~~Vt~~~v~~a~~~~~~ 411 (517)
..|+.+||.+++.....
T Consensus 285 ~~i~~~~v~~~l~~~~~ 301 (310)
T 1ofh_A 285 VNIDAAYVADALGEVVE 301 (310)
T ss_dssp EEECHHHHHHHTCSSSS
T ss_pred EEEeeHHHHHHHHhhhh
Confidence 05999999999876543
No 28
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.80 E-value=4.1e-18 Score=171.88 Aligned_cols=214 Identities=16% Similarity=0.184 Sum_probs=146.6
Q ss_pred cCcCCCC---CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCC
Q 010136 117 LHVSTAP---STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCT 193 (517)
Q Consensus 117 l~~~~~p---~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~ 193 (517)
|...|.| +.++|+++.++.+..+ +..+..++++|+||||||||++++.+++.+...... ...++++++.
T Consensus 27 ~~~k~~p~~~~~i~g~~~~~~~l~~~----l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~----~~~~~~~~~~ 98 (353)
T 1sxj_D 27 WVEKYRPKNLDEVTAQDHAVTVLKKT----LKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLM----KSRILELNAS 98 (353)
T ss_dssp HHHHTCCSSTTTCCSCCTTHHHHHHH----TTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHH----TTSEEEECSS
T ss_pred HHHhcCCCCHHHhhCCHHHHHHHHHH----HhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCccc----ccceEEEccc
Confidence 3344554 5799999987766666 444555679999999999999999999998642111 1468899998
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcE
Q 010136 194 SLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRF 273 (517)
Q Consensus 194 ~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v 273 (517)
.......+ ......+....... ... . ... ......+.||||||+|.+....++.|..+++... ...
T Consensus 99 ~~~~~~~~-~~~~~~~~~~~~~~-~~~-~-----~~~---~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~---~~~ 164 (353)
T 1sxj_D 99 DERGISIV-REKVKNFARLTVSK-PSK-H-----DLE---NYPCPPYKIIILDEADSMTADAQSALRRTMETYS---GVT 164 (353)
T ss_dssp SCCCHHHH-TTHHHHHHHSCCCC-CCT-T-----HHH---HSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTT---TTE
T ss_pred cccchHHH-HHHHHHHhhhcccc-cch-h-----hcc---cCCCCCceEEEEECCCccCHHHHHHHHHHHHhcC---CCc
Confidence 76544332 11111111000000 000 0 000 0112355799999999998777788888877642 345
Q ss_pred EEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHH
Q 010136 274 ILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSV 353 (517)
Q Consensus 274 ~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~l 353 (517)
.+|.++|. +..+.+.+.+| + ..+.|.|++.+++..++..++... ...+++++++++++ ...||+|.++++
T Consensus 165 ~~il~~~~---~~~l~~~l~sR-~--~~i~~~~~~~~~~~~~l~~~~~~~-~~~i~~~~l~~l~~---~~~G~~r~~~~~ 234 (353)
T 1sxj_D 165 RFCLICNY---VTRIIDPLASQ-C--SKFRFKALDASNAIDRLRFISEQE-NVKCDDGVLERILD---ISAGDLRRGITL 234 (353)
T ss_dssp EEEEEESC---GGGSCHHHHHH-S--EEEECCCCCHHHHHHHHHHHHHTT-TCCCCHHHHHHHHH---HTSSCHHHHHHH
T ss_pred eEEEEeCc---hhhCcchhhcc-C--ceEEeCCCCHHHHHHHHHHHHHHh-CCCCCHHHHHHHHH---HcCCCHHHHHHH
Confidence 56667774 56688999998 6 589999999999999999887532 23689999999987 467999999999
Q ss_pred HHHHHHHHH
Q 010136 354 CRSAIEILE 362 (517)
Q Consensus 354 l~~A~~~a~ 362 (517)
++.++..+.
T Consensus 235 l~~~~~~~~ 243 (353)
T 1sxj_D 235 LQSASKGAQ 243 (353)
T ss_dssp HHHTHHHHH
T ss_pred HHHHHHhcC
Confidence 998886654
No 29
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.80 E-value=8.5e-19 Score=177.33 Aligned_cols=234 Identities=15% Similarity=0.112 Sum_probs=157.2
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhc--------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCC
Q 010136 123 PSTIVCREDEQKKVLEFCKKNLE--------EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTS 194 (517)
Q Consensus 123 p~~l~gRe~e~~~l~~~L~~~l~--------~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~ 194 (517)
.++++|++..++.|.+.+...+. ...+.+++|+||||||||++++++++++. ..+++++|..
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~----------~~~~~i~~~~ 152 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG----------ATFFSISASS 152 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT----------CEEEEEEGGG
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC----------CeEEEEehHH
Confidence 35789999999999988765321 23567899999999999999999988753 4799999976
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCc------------hHHHHH
Q 010136 195 LTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDR------------AVLHDL 262 (517)
Q Consensus 195 ~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~------------~~L~~l 262 (517)
+.+.+. + .....+..+|... ....+.||||||||.|..... ..|..+
T Consensus 153 l~~~~~-----------------g-~~~~~~~~~~~~a---~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l 211 (357)
T 3d8b_A 153 LTSKWV-----------------G-EGEKMVRALFAVA---RCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQL 211 (357)
T ss_dssp GCCSST-----------------T-HHHHHHHHHHHHH---HHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHH
T ss_pred hhcccc-----------------c-hHHHHHHHHHHHH---HhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHH
Confidence 543211 1 1234455555421 234578999999999975421 223333
Q ss_pred hccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHH
Q 010136 263 FMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAA 342 (517)
Q Consensus 263 ~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~ 342 (517)
.........+++||+++|. ++.+++.+.+| |. ..+.|+.++.++..+|+...+.... ..++++.++.+++.+
T Consensus 212 ~~~~~~~~~~v~vI~atn~---~~~l~~~l~~R-f~-~~i~i~~p~~~~r~~il~~~~~~~~-~~l~~~~l~~la~~t-- 283 (357)
T 3d8b_A 212 DGATTSSEDRILVVGATNR---PQEIDEAARRR-LV-KRLYIPLPEASARKQIVINLMSKEQ-CCLSEEEIEQIVQQS-- 283 (357)
T ss_dssp HC----CCCCEEEEEEESC---GGGBCHHHHTT-CC-EEEECCCCCHHHHHHHHHHHHHTSC-BCCCHHHHHHHHHHT--
T ss_pred hcccccCCCCEEEEEecCC---hhhCCHHHHhh-Cc-eEEEeCCcCHHHHHHHHHHHHhhcC-CCccHHHHHHHHHHc--
Confidence 3233334568999999995 56788899988 63 5899999999999999998876432 357888899988854
Q ss_pred HhC-CHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccC
Q 010136 343 ASG-DMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKS 412 (517)
Q Consensus 343 ~~G-d~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~ 412 (517)
.| ..+....+|+.|+..+.++....... .... .....|+.+||..|+..+..+
T Consensus 284 -~G~s~~dl~~l~~~a~~~~ir~l~~~~~~------~~~~----------~~~~~i~~~d~~~al~~~~ps 337 (357)
T 3d8b_A 284 -DAFSGADMTQLCREASLGPIRSLQTADIA------TITP----------DQVRPIAYIDFENAFRTVRPS 337 (357)
T ss_dssp -TTCCHHHHHHHHHHHHTHHHHHCCC--------------------------CCCBCHHHHHHHHHHHGGG
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHhhhhhhc------cccc----------cccCCcCHHHHHHHHHhcCCC
Confidence 44 34455578899887766543210000 0000 001269999999999888764
No 30
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.80 E-value=3.1e-19 Score=176.34 Aligned_cols=247 Identities=18% Similarity=0.208 Sum_probs=153.5
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhc---------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCC
Q 010136 123 PSTIVCREDEQKKVLEFCKKNLE---------EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCT 193 (517)
Q Consensus 123 p~~l~gRe~e~~~l~~~L~~~l~---------~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~ 193 (517)
.++++|.++.++.|.+++...+. -..+.+++|+||||||||+++++++.++. ..+++++|.
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~----------~~~i~v~~~ 83 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ----------ANFISIKGP 83 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT----------CEEEEECHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC----------CCEEEEEhH
Confidence 34689999999999888764321 13467899999999999999999998763 468899875
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC-----------chHHHHH
Q 010136 194 SLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD-----------RAVLHDL 262 (517)
Q Consensus 194 ~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~-----------~~~L~~l 262 (517)
.+ +. .+. +.. ...+..+|... ....+.||||||+|.+.... ...+..+
T Consensus 84 ~l------~~----~~~-------g~~-~~~~~~~f~~a---~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~l 142 (301)
T 3cf0_A 84 EL------LT----MWF-------GES-EANVREIFDKA---RQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQI 142 (301)
T ss_dssp HH------HH----HHH-------TTC-TTHHHHHHHHH---HHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHH
T ss_pred HH------Hh----hhc-------Cch-HHHHHHHHHHH---HhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHH
Confidence 42 11 111 111 23355556532 23457899999999986431 1233333
Q ss_pred hccC--CCCCCcEEEEEEECCCCcchhhcccccc--cCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHH
Q 010136 263 FMLT--TFPFSRFILIGIANAIDLADRFLPRLQS--MNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCAR 338 (517)
Q Consensus 263 ~~~~--~~~~~~v~lI~ian~~~~~~~l~~~l~s--r~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~ 338 (517)
+.+. .....+++||++||. ++.+++.+.+ | | ...|.|++++.+++.+|++..+.... ...+..++.++.
T Consensus 143 L~~l~~~~~~~~v~vi~atn~---~~~ld~al~r~gR-f-~~~i~i~~p~~~~r~~il~~~l~~~~--~~~~~~~~~la~ 215 (301)
T 3cf0_A 143 LTEMDGMSTKKNVFIIGATNR---PDIIDPAILRPGR-L-DQLIYIPLPDEKSRVAILKANLRKSP--VAKDVDLEFLAK 215 (301)
T ss_dssp HHHHHSSCTTSSEEEEEEESC---GGGSCGGGGSTTS-S-CEEEECCCCCHHHHHHHHHHHHTTSC--BCSSCCHHHHHH
T ss_pred HHHhhcccCCCCEEEEEecCC---ccccChHHhcCCc-c-ceEEecCCcCHHHHHHHHHHHHccCC--CCccchHHHHHH
Confidence 3321 123468999999994 6678888887 5 5 36899999999999999998887542 112333566666
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhh-hhccCccccHHHHHHHHHHhccCh
Q 010136 339 KVAAASGDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASA-FEFFNSQVRVDHMAVALSNTFKSP 413 (517)
Q Consensus 339 ~~~~~~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Vt~~~v~~a~~~~~~~~ 413 (517)
....++| +..-++|++|+..|..+............ . ..+. .... .......|+.+||..|+..+..+.
T Consensus 216 ~~~g~sg--~dl~~l~~~a~~~a~~~~~~~~~~~~~~~-~-~~~~--~~~~~~~~~~~~v~~~~~~~al~~~~~s~ 285 (301)
T 3cf0_A 216 MTNGFSG--ADLTEICQRACKLAIRESIESEIRRERER-Q-TNPS--AMEVEEDDPVPEIRRDHFEEAMRFARRSV 285 (301)
T ss_dssp TCSSCCH--HHHHHHHHHHHHHHHHHHHHHHC------------------------CCCBCHHHHHHHHTTCCCSS
T ss_pred HcCCCCH--HHHHHHHHHHHHHHHHHHHHhhhhhhhhc-c-cccc--cccccccccCCccCHHHHHHHHHHcCCCC
Confidence 4333333 35557899998888766543211100000 0 0000 0000 001113699999999999887654
No 31
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.80 E-value=2.1e-18 Score=178.82 Aligned_cols=208 Identities=16% Similarity=0.220 Sum_probs=147.1
Q ss_pred CCCCCcHHHH---HHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHH
Q 010136 124 STIVCREDEQ---KKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSE 200 (517)
Q Consensus 124 ~~l~gRe~e~---~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~ 200 (517)
++++|++..+ ..|...+. .+...+++|+||||||||++++.+++.+. ..++.+++.... ...
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~----~~~~~~vLL~GppGtGKTtlAr~ia~~~~----------~~f~~l~a~~~~-~~~ 90 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIE----AGHLHSMILWGPPGTGKTTLAEVIARYAN----------ADVERISAVTSG-VKE 90 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHH----HTCCCEEEEECSTTSSHHHHHHHHHHHTT----------CEEEEEETTTCC-HHH
T ss_pred HHhCCcHHHHhchHHHHHHHH----cCCCcEEEEECCCCCcHHHHHHHHHHHhC----------CCeEEEEeccCC-HHH
Confidence 5789999877 45555544 35568999999999999999999998763 468899986542 222
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEEC
Q 010136 201 IFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIAN 280 (517)
Q Consensus 201 i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian 280 (517)
+ .+.+...... .....+.||||||||.|....|+.|...++. ..+++|++++
T Consensus 91 i--------------------r~~~~~a~~~---~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-----~~v~lI~att 142 (447)
T 3pvs_A 91 I--------------------REAIERARQN---RNAGRRTILFVDEVHRFNKSQQDAFLPHIED-----GTITFIGATT 142 (447)
T ss_dssp H--------------------HHHHHHHHHH---HHTTCCEEEEEETTTCC------CCHHHHHT-----TSCEEEEEES
T ss_pred H--------------------HHHHHHHHHh---hhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-----CceEEEecCC
Confidence 1 1111111110 0134568999999999988777777777754 4578888774
Q ss_pred CCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhh------ccCCCChhHHHHHHHHHHHHhCCHHHHHHHH
Q 010136 281 AIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMEL------SYIVFQPQALELCARKVAAASGDMRKALSVC 354 (517)
Q Consensus 281 ~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~------~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll 354 (517)
. +....+.+.+.+| + .++.|.+++.+++..++...+... ....+++++++.+++. ..||+|.++++|
T Consensus 143 ~-n~~~~l~~aL~sR-~--~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~---~~Gd~R~lln~L 215 (447)
T 3pvs_A 143 E-NPSFELNSALLSR-A--RVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL---VNGDARRALNTL 215 (447)
T ss_dssp S-CGGGSSCHHHHTT-E--EEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH---HCSCHHHHHHHH
T ss_pred C-CcccccCHHHhCc-e--eEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH---CCCCHHHHHHHH
Confidence 3 3445678999998 6 689999999999999999988642 2246899999999884 789999999999
Q ss_pred HHHHHHHHHH--HHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHh
Q 010136 355 RSAIEILEAE--MRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNT 409 (517)
Q Consensus 355 ~~A~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~ 409 (517)
+.++..+... +.. .||.++|.+++...
T Consensus 216 e~a~~~a~~~~~~~~----------------------------~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 216 EMMADMAEVDDSGKR----------------------------VLKPELLTEIAGER 244 (447)
T ss_dssp HHHHHHSCBCTTSCE----------------------------ECCHHHHHHHHTCC
T ss_pred HHHHHhcccccCCCC----------------------------ccCHHHHHHHHhhh
Confidence 9998765321 111 68999999888765
No 32
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.79 E-value=1.7e-18 Score=170.63 Aligned_cols=235 Identities=16% Similarity=0.134 Sum_probs=156.9
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhc--------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCC
Q 010136 123 PSTIVCREDEQKKVLEFCKKNLE--------EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTS 194 (517)
Q Consensus 123 p~~l~gRe~e~~~l~~~L~~~l~--------~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~ 194 (517)
.++++|.+..++.+...+..... ...+.+++|+||||||||++++++++++. ..+++++|..
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~----------~~~~~i~~~~ 89 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS----------ATFLNISAAS 89 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT----------CEEEEEESTT
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC----------CCeEEeeHHH
Confidence 35789999999999888754321 23467999999999999999999988763 4789999977
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCc--------hH---HHHHh
Q 010136 195 LTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDR--------AV---LHDLF 263 (517)
Q Consensus 195 ~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~--------~~---L~~l~ 263 (517)
+...+ .......+..+|... ....+.||||||+|.+....+ .. |...+
T Consensus 90 l~~~~------------------~~~~~~~~~~~~~~~---~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l 148 (297)
T 3b9p_A 90 LTSKY------------------VGDGEKLVRALFAVA---RHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEF 148 (297)
T ss_dssp TSSSS------------------CSCHHHHHHHHHHHH---HHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHH
T ss_pred Hhhcc------------------cchHHHHHHHHHHHH---HHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHH
Confidence 64321 112244555555421 234578999999999976432 12 22222
Q ss_pred cc-CC-CCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHH
Q 010136 264 ML-TT-FPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVA 341 (517)
Q Consensus 264 ~~-~~-~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~ 341 (517)
+. .. ....++++|+++|. ++.+++.+.+| |. ..+.|++++.++...|+...+.... ..+++++++.+++.
T Consensus 149 ~~~~~~~~~~~v~vi~~tn~---~~~l~~~l~~R-~~-~~i~~~~p~~~~r~~il~~~~~~~~-~~~~~~~~~~la~~-- 220 (297)
T 3b9p_A 149 DGLPGNPDGDRIVVLAATNR---PQELDEAALRR-FT-KRVYVSLPDEQTRELLLNRLLQKQG-SPLDTEALRRLAKI-- 220 (297)
T ss_dssp HHCC------CEEEEEEESC---GGGBCHHHHHH-CC-EEEECCCCCHHHHHHHHHHHHGGGS-CCSCHHHHHHHHHH--
T ss_pred hcccccCCCCcEEEEeecCC---hhhCCHHHHhh-CC-eEEEeCCcCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHH--
Confidence 22 21 12357999999994 56788888888 64 5899999999999999998876542 35788888888874
Q ss_pred HHhCCHHHHH-HHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccCh
Q 010136 342 AASGDMRKAL-SVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSP 413 (517)
Q Consensus 342 ~~~Gd~R~al-~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~ 413 (517)
..|..+.++ .+|+.|+..+.++........ ... .....|+.+||..|+..+..+.
T Consensus 221 -~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~------~~~----------~~~~~i~~~d~~~a~~~~~~s~ 276 (297)
T 3b9p_A 221 -TDGYSGSDLTALAKDAALEPIRELNVEQVKC------LDI----------SAMRAITEQDFHSSLKRIRRSV 276 (297)
T ss_dssp -TTTCCHHHHHHHHHHHTTHHHHTCC--------------C----------CCCCCCCHHHHHHHTTSCCCSS
T ss_pred -cCCCCHHHHHHHHHHHHHHHHHHHhhhhccc------ccc----------cccCCcCHHHHHHHHHHcCCCC
Confidence 466655555 788888877766532110000 000 0011699999999998876553
No 33
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.79 E-value=1.3e-18 Score=180.83 Aligned_cols=208 Identities=15% Similarity=0.148 Sum_probs=142.8
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhc--------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCC
Q 010136 122 APSTIVCREDEQKKVLEFCKKNLE--------EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCT 193 (517)
Q Consensus 122 ~p~~l~gRe~e~~~l~~~L~~~l~--------~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~ 193 (517)
.+++++|.+...+.|...+...+. ...+.+++|+||||||||++++++++++. ...+++++|.
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~---------~~~~~~v~~~ 202 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN---------NSTFFSISSS 202 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC---------SSEEEEECCC
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC---------CCCEEEEeHH
Confidence 345789999999888887643211 12457899999999999999999998762 1478999998
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC--------chHHHHHhcc
Q 010136 194 SLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD--------RAVLHDLFML 265 (517)
Q Consensus 194 ~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~--------~~~L~~l~~~ 265 (517)
.+.+.+. +.. ...+..+|... ....+.||||||||.+.... ..++..++.+
T Consensus 203 ~l~~~~~-----------------g~~-~~~~~~~f~~a---~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~ 261 (444)
T 2zan_A 203 DLVSKWL-----------------GES-EKLVKNLFQLA---RENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQ 261 (444)
T ss_dssp --------------------------C-CCTHHHHHHHH---HHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTT
T ss_pred HHHhhhc-----------------chH-HHHHHHHHHHH---HHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHH
Confidence 7643221 111 12244455421 23467899999999996542 1344445544
Q ss_pred C---CCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHH
Q 010136 266 T---TFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAA 342 (517)
Q Consensus 266 ~---~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~ 342 (517)
. ......++||+++|. ++.+++.+.+| |. ..+.|++++.+++..|+...+.... ..+++..++.+++.+.+
T Consensus 262 l~~~~~~~~~v~vI~atn~---~~~ld~al~rR-f~-~~i~i~~P~~~~r~~il~~~l~~~~-~~l~~~~l~~la~~t~G 335 (444)
T 2zan_A 262 MQGVGVDNDGILVLGATNI---PWVLDSAIRRR-FE-KRIYIPLPEAHARAAMFRLHLGSTQ-NSLTEADFQELGRKTDG 335 (444)
T ss_dssp TTCSSCCCSSCEEEEEESC---GGGSCHHHHTT-CC-EEEECCCCCHHHHHHHHHHHHTTSC-EECCHHHHHHHHHHTTT
T ss_pred HhCcccCCCCEEEEecCCC---ccccCHHHHhh-cc-eEEEeCCcCHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHcCC
Confidence 2 224578999999994 67788999998 63 5899999999999999998886542 24678889999885433
Q ss_pred HhCCHHHHHHHHHHHHHHHHHHHHh
Q 010136 343 ASGDMRKALSVCRSAIEILEAEMRE 367 (517)
Q Consensus 343 ~~Gd~R~al~ll~~A~~~a~~~~~~ 367 (517)
+ ..+..-.+|+.|+..|.++...
T Consensus 336 ~--sgadl~~l~~~a~~~a~r~~~~ 358 (444)
T 2zan_A 336 Y--SGADISIIVRDALMQPVRKVQS 358 (444)
T ss_dssp C--CHHHHHHHHHHHHTHHHHHHHH
T ss_pred C--CHHHHHHHHHHHHHHHHHHHHh
Confidence 2 3455557899999888877654
No 34
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.79 E-value=5.3e-18 Score=169.27 Aligned_cols=187 Identities=19% Similarity=0.203 Sum_probs=135.9
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFS 203 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~ 203 (517)
++++|+++.++.+..++.. +..+..++++||||||||++++++++.+. ..++++|+.... ...+ .
T Consensus 26 ~~ivg~~~~~~~l~~~l~~---~~~~~~~L~~G~~G~GKT~la~~la~~l~----------~~~~~i~~~~~~-~~~i-~ 90 (324)
T 3u61_B 26 DECILPAFDKETFKSITSK---GKIPHIILHSPSPGTGKTTVAKALCHDVN----------ADMMFVNGSDCK-IDFV-R 90 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHT---TCCCSEEEECSSTTSSHHHHHHHHHHHTT----------EEEEEEETTTCC-HHHH-H
T ss_pred HHHhCcHHHHHHHHHHHHc---CCCCeEEEeeCcCCCCHHHHHHHHHHHhC----------CCEEEEcccccC-HHHH-H
Confidence 5799999998888887763 23345667788899999999999988873 479999987753 2221 1
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhc-ccCchHHHHHhccCCCCCCcEEEEEEECCC
Q 010136 204 KILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLI-TRDRAVLHDLFMLTTFPFSRFILIGIANAI 282 (517)
Q Consensus 204 ~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~-~~~~~~L~~l~~~~~~~~~~v~lI~ian~~ 282 (517)
..+..... .....+.+.||||||+|.+. ...++.|..+++.. ...+.+|+++|.
T Consensus 91 -------------------~~~~~~~~--~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~---~~~~~iI~~~n~- 145 (324)
T 3u61_B 91 -------------------GPLTNFAS--AASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAY---SSNCSIIITANN- 145 (324)
T ss_dssp -------------------THHHHHHH--BCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHH---GGGCEEEEEESS-
T ss_pred -------------------HHHHHHHh--hcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhC---CCCcEEEEEeCC-
Confidence 11222221 11123467899999999998 66677888877653 246778888995
Q ss_pred CcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhh------hccCCCCh-hHHHHHHHHHHHHhCCHHHHHHHHH
Q 010136 283 DLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLME------LSYIVFQP-QALELCARKVAAASGDMRKALSVCR 355 (517)
Q Consensus 283 ~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~------~~~~~~~~-~ai~~ia~~~~~~~Gd~R~al~ll~ 355 (517)
...+.+++.+| | ..+.|++++.+++.+|+...+.. .....+++ ++++.+++ ...||+|.|++.++
T Consensus 146 --~~~l~~~l~sR-~--~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~---~~~gd~R~a~~~L~ 217 (324)
T 3u61_B 146 --IDGIIKPLQSR-C--RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVK---KNFPDFRKTIGELD 217 (324)
T ss_dssp --GGGSCTTHHHH-S--EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHH---HTCSCTTHHHHHHH
T ss_pred --ccccCHHHHhh-C--cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH---hCCCCHHHHHHHHH
Confidence 55788999999 7 68999999999977665554321 12346777 99999887 47899999999998
Q ss_pred HHH
Q 010136 356 SAI 358 (517)
Q Consensus 356 ~A~ 358 (517)
.+.
T Consensus 218 ~~~ 220 (324)
T 3u61_B 218 SYS 220 (324)
T ss_dssp HHG
T ss_pred HHh
Confidence 876
No 35
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.79 E-value=1.3e-20 Score=205.67 Aligned_cols=247 Identities=18% Similarity=0.209 Sum_probs=130.5
Q ss_pred CCCCCcHHHHHHHHHHHHHhhc---------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCC
Q 010136 124 STIVCREDEQKKVLEFCKKNLE---------EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTS 194 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~---------~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~ 194 (517)
+.+.|.++..+.|.+.+.-.+. ...+.++|||||||||||+++++++.+++ ..++.+++..
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~----------~~f~~v~~~~ 546 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ----------ANFISIKGPE 546 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT----------CEEEECCHHH
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhC----------CceEEeccch
Confidence 3455555555555444332111 12466899999999999999999998865 4688877655
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC-----------chHHHHHh
Q 010136 195 LTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD-----------RAVLHDLF 263 (517)
Q Consensus 195 ~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~-----------~~~L~~l~ 263 (517)
+.+.+ .|.+ .+.++.+|.. ++...|+||||||||.+...+ ..++.+|+
T Consensus 547 l~s~~-----------------vGes-e~~vr~lF~~---Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL 605 (806)
T 3cf2_A 547 LLTMW-----------------FGES-EANVREIFDK---ARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQIL 605 (806)
T ss_dssp HHTTT-----------------CSSC-HHHHHHHHHH---HHTTCSEEEECSCGGGCC--------------CHHHHHHH
T ss_pred hhccc-----------------cchH-HHHHHHHHHH---HHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHH
Confidence 42222 2444 7889999983 346678999999999997542 12344444
Q ss_pred ccC--CCCCCcEEEEEEECCCCcchhhcccccc--cCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHH
Q 010136 264 MLT--TFPFSRFILIGIANAIDLADRFLPRLQS--MNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARK 339 (517)
Q Consensus 264 ~~~--~~~~~~v~lI~ian~~~~~~~l~~~l~s--r~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~ 339 (517)
.+. ......|+|||+|| .++.+++++.+ | | ...|+|+.++.+++.+||+..+.+.+ .-.+-.++.+|+.
T Consensus 606 ~~mdg~~~~~~V~vi~aTN---~p~~lD~AllRpgR-f-d~~i~v~lPd~~~R~~il~~~l~~~~--~~~~~dl~~la~~ 678 (806)
T 3cf2_A 606 TEMDGMSTKKNVFIIGATN---RPDIIDPAILRPGR-L-DQLIYIPLPDEKSRVAILKANLRKSP--VAKDVDLEFLAKM 678 (806)
T ss_dssp HHHHSSCSSSSEEEECC-C---CSSSSCHHHHSTTT-S-CCEEEC-----CHHHHTTTTTSSCC----CCC---------
T ss_pred HHHhCCCCCCCEEEEEeCC---CchhCCHhHcCCCc-c-eEEEEECCcCHHHHHHHHHHHhcCCC--CCCCCCHHHHHHh
Confidence 431 12346799999999 57778999987 5 5 46999999999999999997776542 1223347888888
Q ss_pred HHHHhC-CHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccChh
Q 010136 340 VAAASG-DMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSPV 414 (517)
Q Consensus 340 ~~~~~G-d~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~~ 414 (517)
+..++| |+. .+|+.|+..|.++.............. .+.. .........+.|+++||.+|+.++..+..
T Consensus 679 t~g~SGadi~---~l~~~A~~~a~r~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~i~~~df~~al~~~~pSvs 748 (806)
T 3cf2_A 679 TNGFSGADLT---EICQRACKLAIRESIESEIRRERERQT--NPSA-MEVEEDDPVPEIRRDHFEEAMRFARRSVS 748 (806)
T ss_dssp -------CHH---HHHHHHHHHHHHHHHC--------------------------CCC----CCTTTC--------
T ss_pred CCCCCHHHHH---HHHHHHHHHHHHHHHHhhhhhhhhhcc--Cccc-cccccccccCccCHHHHHHHHHhCCCCCC
Confidence 877776 666 689999998887765422110000000 0000 00000111236999999999988887653
No 36
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.78 E-value=1.1e-19 Score=198.45 Aligned_cols=208 Identities=17% Similarity=0.202 Sum_probs=146.9
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhc---------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeC
Q 010136 122 APSTIVCREDEQKKVLEFCKKNLE---------EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINC 192 (517)
Q Consensus 122 ~p~~l~gRe~e~~~l~~~L~~~l~---------~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~ 192 (517)
..+++.|.++++++|.+.+.-.+. -..+.++|||||||||||+++++++++++ ..+++|+|
T Consensus 202 ~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg----------~~~~~v~~ 271 (806)
T 3cf2_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG----------AFFFLING 271 (806)
T ss_dssp CGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTT----------CEEEEEEH
T ss_pred ChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC----------CeEEEEEh
Confidence 345789999999999888754332 12467999999999999999999998764 57999998
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCc--------hHHHHHhc
Q 010136 193 TSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDR--------AVLHDLFM 264 (517)
Q Consensus 193 ~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~--------~~L~~l~~ 264 (517)
..+.+.+ .......++.+|.. +....|+||||||+|.|..... ..+.+|+.
T Consensus 272 ~~l~sk~------------------~gese~~lr~lF~~---A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~ 330 (806)
T 3cf2_A 272 PEIMSKL------------------AGESESNLRKAFEE---AEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLT 330 (806)
T ss_dssp HHHHSSC------------------TTHHHHHHHHHHHH---HTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHT
T ss_pred HHhhccc------------------chHHHHHHHHHHHH---HHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHH
Confidence 6542211 12236778888873 3567899999999999986421 34445544
Q ss_pred cC--CCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHH
Q 010136 265 LT--TFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAA 342 (517)
Q Consensus 265 ~~--~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~ 342 (517)
+. .....+|+||++||. ++.+++.+++.......|.|+.++.++..+||+..+.+.. .-++..++.+|+.+..
T Consensus 331 ~mdg~~~~~~V~VIaaTN~---~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~--~~~dvdl~~lA~~T~G 405 (806)
T 3cf2_A 331 LMDGLKQRAHVIVMAATNR---PNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK--LADDVDLEQVANETHG 405 (806)
T ss_dssp HHHHCCGGGCEEEEEECSS---TTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSE--ECTTCCHHHHHHHCCS
T ss_pred HHhcccccCCEEEEEecCC---hhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCC--CCcccCHHHHHHhcCC
Confidence 41 123467999999995 6778899988322356999999999999999997776542 1223346777775443
Q ss_pred HhCCHHHHHHHHHHHHHHHHHHHHh
Q 010136 343 ASGDMRKALSVCRSAIEILEAEMRE 367 (517)
Q Consensus 343 ~~Gd~R~al~ll~~A~~~a~~~~~~ 367 (517)
++| ...-.+|++|...|..+...
T Consensus 406 fsg--aDL~~Lv~eA~~~A~~r~~~ 428 (806)
T 3cf2_A 406 HVG--ADLAALCSEAALQAIRKKMD 428 (806)
T ss_dssp CCH--HHHHHHHHHHHHHHHHHHHH
T ss_pred CCH--HHHHHHHHHHHHHHHHhccc
Confidence 333 33446889988887766544
No 37
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.78 E-value=4.3e-19 Score=185.69 Aligned_cols=242 Identities=18% Similarity=0.169 Sum_probs=159.9
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhc---------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeC
Q 010136 122 APSTIVCREDEQKKVLEFCKKNLE---------EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINC 192 (517)
Q Consensus 122 ~p~~l~gRe~e~~~l~~~L~~~l~---------~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~ 192 (517)
..+.++|.+.+++.|.+++...+. ...+.++||+||||||||++++++++++. ..++++||
T Consensus 202 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~----------~~fv~vn~ 271 (489)
T 3hu3_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG----------AFFFLING 271 (489)
T ss_dssp CGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS----------SEEEEEEH
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC----------CCEEEEEc
Confidence 446799999999999998765422 24567899999999999999999987752 47999998
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCc-----------hHHHH
Q 010136 193 TSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDR-----------AVLHD 261 (517)
Q Consensus 193 ~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~-----------~~L~~ 261 (517)
..+.+. + .......+...|... ....+.+|||||||.|....+ ..|..
T Consensus 272 ~~l~~~----------~--------~g~~~~~~~~~f~~A---~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~ 330 (489)
T 3hu3_A 272 PEIMSK----------L--------AGESESNLRKAFEEA---EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLT 330 (489)
T ss_dssp HHHHTS----------C--------TTHHHHHHHHHHHHH---HHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHH
T ss_pred hHhhhh----------h--------cchhHHHHHHHHHHH---HhcCCcEEEecchhhhccccccccchHHHHHHHHHHH
Confidence 553211 1 011244566666632 244578999999999987532 22444
Q ss_pred HhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHH
Q 010136 262 LFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVA 341 (517)
Q Consensus 262 l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~ 341 (517)
+++.. .....++||+++|. ++.+++.+.++......+.|++++.++..+||+.++..+. ...+..++.+++.
T Consensus 331 ~ld~~-~~~~~v~vIaaTn~---~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~--l~~~~~l~~la~~-- 402 (489)
T 3hu3_A 331 LMDGL-KQRAHVIVMAATNR---PNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK--LADDVDLEQVANE-- 402 (489)
T ss_dssp HHHHS-CTTSCEEEEEEESC---GGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSC--BCTTCCHHHHHHT--
T ss_pred Hhhcc-ccCCceEEEEecCC---ccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCC--CcchhhHHHHHHH--
Confidence 44432 24568999999995 5668889988422245899999999999999998887542 2233345666663
Q ss_pred HHhC-CHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccChh
Q 010136 342 AASG-DMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSPV 414 (517)
Q Consensus 342 ~~~G-d~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~~ 414 (517)
..| ..+..-.+|+.|+..|.++.....+... ...+. .......|+++||.+|+..+..+..
T Consensus 403 -t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~-----~~~~~------~~~~~~~vt~edf~~Al~~~~ps~~ 464 (489)
T 3hu3_A 403 -THGHVGADLAALCSEAALQAIRKKMDLIDLED-----ETIDA------EVMNSLAVTMDDFRWALSQSNPSAL 464 (489)
T ss_dssp -CTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTC-----SSCCH------HHHHHCCBCHHHHHHHHTSHHHHHH
T ss_pred -ccCCcHHHHHHHHHHHHHHHHHhccccccccc-----cccch------hhcccCcCCHHHHHHHHHhCCchhh
Confidence 344 3455557889999888776543111000 00000 0000116999999999988776543
No 38
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.78 E-value=5.3e-18 Score=176.00 Aligned_cols=222 Identities=15% Similarity=0.170 Sum_probs=154.8
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhc--------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCC
Q 010136 122 APSTIVCREDEQKKVLEFCKKNLE--------EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCT 193 (517)
Q Consensus 122 ~p~~l~gRe~e~~~l~~~L~~~l~--------~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~ 193 (517)
..++++|.++.++++.+.+..... ...+.+++|+||||||||+++++++.++. ..+++++|.
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~----------~~f~~is~~ 83 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN----------VPFFHISGS 83 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT----------CCEEEEEGG
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC----------CCeeeCCHH
Confidence 445789999998888887654321 12356899999999999999999998763 468999998
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCc-----------hHHHHH
Q 010136 194 SLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDR-----------AVLHDL 262 (517)
Q Consensus 194 ~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~-----------~~L~~l 262 (517)
.+...+. + .....++.+|... ....|+||||||+|.+....+ ..+..|
T Consensus 84 ~~~~~~~-----------------g-~~~~~~r~lf~~A---~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~L 142 (476)
T 2ce7_A 84 DFVELFV-----------------G-VGAARVRDLFAQA---KAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQL 142 (476)
T ss_dssp GTTTCCT-----------------T-HHHHHHHHHHHHH---HHTCSEEEEEETGGGTCCC---------CHHHHHHHHH
T ss_pred HHHHHHh-----------------c-ccHHHHHHHHHHH---HhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHH
Confidence 7643211 1 1244566666632 234689999999999976432 244555
Q ss_pred hccCC--CCCCcEEEEEEECCCCcchhhccccccc-CCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHH
Q 010136 263 FMLTT--FPFSRFILIGIANAIDLADRFLPRLQSM-NCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARK 339 (517)
Q Consensus 263 ~~~~~--~~~~~v~lI~ian~~~~~~~l~~~l~sr-~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~ 339 (517)
+.+.. .....++||+++|. ++.+++.+.+. +| ...|.|++++.+++.+|++..+.... ..++..++.+++
T Consensus 143 L~~ld~~~~~~~viVIaaTn~---~~~Ld~allR~gRF-d~~i~i~~Pd~~~R~~Il~~~~~~~~--l~~~v~l~~la~- 215 (476)
T 2ce7_A 143 LVEMDGFDSKEGIIVMAATNR---PDILDPALLRPGRF-DKKIVVDPPDMLGRKKILEIHTRNKP--LAEDVNLEIIAK- 215 (476)
T ss_dssp HHHHHHSCGGGTEEEEEEESC---GGGSCGGGGSTTSS-CEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHH-
T ss_pred HHHHhccCCCCCEEEEEecCC---hhhhchhhcccCcc-eeEeecCCCCHHHHHHHHHHHHHhCC--CcchhhHHHHHH-
Confidence 54321 12457999999995 56677887762 15 45899999999999999998877542 122223666665
Q ss_pred HHHHhCCH-HHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhcc
Q 010136 340 VAAASGDM-RKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFK 411 (517)
Q Consensus 340 ~~~~~Gd~-R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~ 411 (517)
...|.. +...++|..|+..|..++.. .|+.+|+..|+..+..
T Consensus 216 --~t~G~sgadL~~lv~~Aal~A~~~~~~----------------------------~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 216 --RTPGFVGADLENLVNEAALLAAREGRD----------------------------KITMKDFEEAIDRVIA 258 (476)
T ss_dssp --TCTTCCHHHHHHHHHHHHHHHHHTTCS----------------------------SBCHHHHHHHHHHHC-
T ss_pred --hcCCCcHHHHHHHHHHHHHHHHHcCCC----------------------------eecHHHHHHHHHHHhc
Confidence 456654 67778999998887765443 7999999999988764
No 39
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.78 E-value=1.7e-18 Score=171.52 Aligned_cols=210 Identities=15% Similarity=0.124 Sum_probs=147.5
Q ss_pred CCCCcHHHHHHHHHHHHHhhc-----------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCC
Q 010136 125 TIVCREDEQKKVLEFCKKNLE-----------EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCT 193 (517)
Q Consensus 125 ~l~gRe~e~~~l~~~L~~~l~-----------~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~ 193 (517)
.++|.++..+.|..++..... ...+.+++|+||||||||++++++++.+.... ......++++++.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~---~~~~~~~~~~~~~ 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLG---YVRKGHLVSVTRD 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTT---SSSSCCEEEECGG
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcC---CcCCCcEEEEcHH
Confidence 479999999999888765321 33456899999999999999999999987521 1122368899986
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhccc------CchHHHHHhccCC
Q 010136 194 SLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITR------DRAVLHDLFMLTT 267 (517)
Q Consensus 194 ~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~------~~~~L~~l~~~~~ 267 (517)
.+.+... + .....+...|... .+.||||||+|.|... ....+..|+.+..
T Consensus 109 ~l~~~~~-----------------g-~~~~~~~~~~~~~------~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~ 164 (309)
T 3syl_A 109 DLVGQYI-----------------G-HTAPKTKEVLKRA------MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVME 164 (309)
T ss_dssp GTCCSST-----------------T-CHHHHHHHHHHHH------TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHH
T ss_pred Hhhhhcc-----------------c-ccHHHHHHHHHhc------CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHh
Confidence 6532111 1 1244456666521 2359999999999633 2333344443322
Q ss_pred CCCCcEEEEEEECCCC--cchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHH----
Q 010136 268 FPFSRFILIGIANAID--LADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVA---- 341 (517)
Q Consensus 268 ~~~~~v~lI~ian~~~--~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~---- 341 (517)
....++.+|+++|..+ ....++|.+.+| |. ..+.|++|+.+++..|+...+.... ..+++++++.+++.+.
T Consensus 165 ~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R-~~-~~i~~~~~~~~~~~~il~~~l~~~~-~~~~~~~~~~l~~~~~~~~~ 241 (309)
T 3syl_A 165 NNRDDLVVILAGYADRMENFFQSNPGFRSR-IA-HHIEFPDYSDEELFEIAGHMLDDQN-YQMTPEAETALRAYIGLRRN 241 (309)
T ss_dssp HCTTTCEEEEEECHHHHHHHHHHSTTHHHH-EE-EEEEECCCCHHHHHHHHHHHHHHTT-CEECHHHHHHHHHHHHHHTT
T ss_pred cCCCCEEEEEeCChHHHHHHHhhCHHHHHh-CC-eEEEcCCcCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHhcc
Confidence 2345778888887532 222346899998 53 6999999999999999999887532 4789999999988765
Q ss_pred -HHhCCHHHHHHHHHHHHHHHHHH
Q 010136 342 -AASGDMRKALSVCRSAIEILEAE 364 (517)
Q Consensus 342 -~~~Gd~R~al~ll~~A~~~a~~~ 364 (517)
...|++|.+.++++.|+..+...
T Consensus 242 ~~~~gn~r~l~~~l~~a~~~~~~r 265 (309)
T 3syl_A 242 QPHFANARSIRNALDRARLRQANR 265 (309)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHH
Confidence 45689999999999998655443
No 40
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.78 E-value=1.2e-17 Score=165.99 Aligned_cols=199 Identities=19% Similarity=0.254 Sum_probs=139.9
Q ss_pred cCcCCCC---CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCC
Q 010136 117 LHVSTAP---STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCT 193 (517)
Q Consensus 117 l~~~~~p---~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~ 193 (517)
|...|.| ++++|++..++.+..++ ..+..++++|+||||||||++++.+++.+..... ...++++||.
T Consensus 7 ~~~k~~p~~~~~~~g~~~~~~~l~~~l----~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~-----~~~~~~~~~~ 77 (319)
T 2chq_A 7 WVEKYRPRTLDEVVGQDEVIQRLKGYV----ERKNIPHLLFSGPPGTGKTATAIALARDLFGENW-----RDNFIEMNAS 77 (319)
T ss_dssp TTTTTSCSSGGGSCSCHHHHHHHHTTT----TTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCH-----HHHCEEEETT
T ss_pred HHHhcCCCCHHHHhCCHHHHHHHHHHH----hCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcc-----cCCeEEEeCc
Confidence 4445555 47899999887766664 3455567999999999999999999998742100 0257889987
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcE
Q 010136 194 SLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRF 273 (517)
Q Consensus 194 ~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v 273 (517)
.......+ ...+...... .......+.||||||+|.+....++.|..+++. +...+
T Consensus 78 ~~~~~~~~--------------------~~~~~~~~~~-~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~---~~~~~ 133 (319)
T 2chq_A 78 DERGIDVV--------------------RHKIKEFART-APIGGAPFKIIFLDEADALTADAQAALRRTMEM---YSKSC 133 (319)
T ss_dssp STTCTTTS--------------------SHHHHHHHHS-CCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSS---SSSSE
T ss_pred cccChHHH--------------------HHHHHHHHhc-CCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHh---cCCCC
Confidence 64321110 1222222210 111124578999999999976545555444443 44678
Q ss_pred EEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHH
Q 010136 274 ILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSV 353 (517)
Q Consensus 274 ~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~l 353 (517)
.+|+++|. ...+.+.+.+| + ..+.|.|++.+++.+++..++.... ..+++++++.+++ ...||+|.+++.
T Consensus 134 ~~i~~~~~---~~~l~~~l~sr-~--~~i~~~~~~~~~~~~~l~~~~~~~~-~~i~~~~l~~l~~---~~~G~~r~~~~~ 203 (319)
T 2chq_A 134 RFILSCNY---VSRIIEPIQSR-C--AVFRFKPVPKEAMKKRLLEICEKEG-VKITEDGLEALIY---ISGGDFRKAINA 203 (319)
T ss_dssp EEEEEESC---GGGSCHHHHTT-C--EEEECCCCCHHHHHHHHHHHHHTTC-CCBCHHHHHHHHH---TTTTCHHHHHHH
T ss_pred eEEEEeCC---hhhcchHHHhh-C--eEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHH---HcCCCHHHHHHH
Confidence 88888885 55778899998 6 5999999999999999998876432 3689999999886 568999999999
Q ss_pred HHHHH
Q 010136 354 CRSAI 358 (517)
Q Consensus 354 l~~A~ 358 (517)
++.+.
T Consensus 204 l~~~~ 208 (319)
T 2chq_A 204 LQGAA 208 (319)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98765
No 41
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.77 E-value=1.6e-17 Score=165.82 Aligned_cols=231 Identities=14% Similarity=0.236 Sum_probs=151.0
Q ss_pred hcCcCCCCCCCC-CcHHHHHHHHHHHHHhhccC--CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeC
Q 010136 116 ALHVSTAPSTIV-CREDEQKKVLEFCKKNLEEE--KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINC 192 (517)
Q Consensus 116 ~l~~~~~p~~l~-gRe~e~~~l~~~L~~~l~~~--~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~ 192 (517)
.|.+.+.+++++ |..... ....+...+... .+.+++|+||||||||++++.+++.+... + ..+++++|
T Consensus 3 ~l~~~~~f~~fv~g~~~~~--a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~----~---~~~~~i~~ 73 (324)
T 1l8q_A 3 FLNPKYTLENFIVGEGNRL--AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR----G---YRVIYSSA 73 (324)
T ss_dssp CCCTTCCSSSCCCCTTTHH--HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT----T---CCEEEEEH
T ss_pred CCCCCCCcccCCCCCcHHH--HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC----C---CEEEEEEH
Confidence 356677777776 543322 122233333332 45789999999999999999999987642 1 46899998
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcc--cCchHHHHHhccCCCCC
Q 010136 193 TSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLIT--RDRAVLHDLFMLTTFPF 270 (517)
Q Consensus 193 ~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~--~~~~~L~~l~~~~~~~~ 270 (517)
..+ ...+...+.. .. ...+...+. .+.||||||+|.+.. ..++.|..+++.....
T Consensus 74 ~~~------~~~~~~~~~~-------~~-~~~~~~~~~--------~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~- 130 (324)
T 1l8q_A 74 DDF------AQAMVEHLKK-------GT-INEFRNMYK--------SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLL- 130 (324)
T ss_dssp HHH------HHHHHHHHHH-------TC-HHHHHHHHH--------TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHT-
T ss_pred HHH------HHHHHHHHHc-------Cc-HHHHHHHhc--------CCCEEEEcCcccccCChHHHHHHHHHHHHHHHC-
Confidence 543 2233333310 00 222222222 257999999999976 3456666666542212
Q ss_pred CcEEEEEEECCCCcchhhcccccccCCC-ceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHH
Q 010136 271 SRFILIGIANAIDLADRFLPRLQSMNCK-PLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRK 349 (517)
Q Consensus 271 ~~v~lI~ian~~~~~~~l~~~l~sr~~~-~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~ 349 (517)
...+++++++.......+++++.+| +. ...+.|+| +.+++.+|+..++.... ..+++++++++++. . ||+|.
T Consensus 131 ~~~iii~~~~~~~~l~~l~~~L~sR-~~~~~~i~l~~-~~~e~~~il~~~~~~~~-~~l~~~~l~~l~~~---~-g~~r~ 203 (324)
T 1l8q_A 131 EKQIILASDRHPQKLDGVSDRLVSR-FEGGILVEIEL-DNKTRFKIIKEKLKEFN-LELRKEVIDYLLEN---T-KNVRE 203 (324)
T ss_dssp TCEEEEEESSCGGGCTTSCHHHHHH-HHTSEEEECCC-CHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHH---C-SSHHH
T ss_pred CCeEEEEecCChHHHHHhhhHhhhc-ccCceEEEeCC-CHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHh---C-CCHHH
Confidence 2345555444433333578899998 52 25799999 99999999998886432 47899999999884 4 99999
Q ss_pred HHHHHHHHHHHH---HH-HHHhhhhccccccccccchhhhhhhhhhccCccc-cHHHHHHHHHHhccCh
Q 010136 350 ALSVCRSAIEIL---EA-EMRESVSKMNSASAEQGLFDQQAASAFEFFNSQV-RVDHMAVALSNTFKSP 413 (517)
Q Consensus 350 al~ll~~A~~~a---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V-t~~~v~~a~~~~~~~~ 413 (517)
+.+++..++... .. .... .| +.+++.+++.+.+...
T Consensus 204 l~~~l~~~~~~~~~~l~~~~~~----------------------------~i~t~~~i~~~~~~~~~~~ 244 (324)
T 1l8q_A 204 IEGKIKLIKLKGFEGLERKERK----------------------------ERDKLMQIVEFVANYYAVK 244 (324)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHcCHHHhcccccc----------------------------CCCCHHHHHHHHHHHhCCC
Confidence 999998877651 00 1111 68 9999999999887654
No 42
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.76 E-value=1.1e-17 Score=168.10 Aligned_cols=192 Identities=21% Similarity=0.281 Sum_probs=136.6
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFS 203 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~ 203 (517)
+.++|++..++.|..++. .+..++++|+||||||||++++.+++.+..... ...+.++|+........+.
T Consensus 25 ~~~~g~~~~~~~L~~~i~----~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~-----~~~~~~~~~~~~~~~~~ir- 94 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVD----EGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY-----SNMVLELNASDDRGIDVVR- 94 (340)
T ss_dssp GGCCSCHHHHHHHHHHHH----TTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH-----HHHEEEECTTSCCSHHHHH-
T ss_pred HHhcCcHHHHHHHHHHHh----cCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc-----cceEEEEcCcccccHHHHH-
Confidence 357888887766665544 455566999999999999999999998753110 0357888887654433221
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCCC
Q 010136 204 KILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAID 283 (517)
Q Consensus 204 ~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~ 283 (517)
+.+..+... ...-.....|++|||+|.+....++.|..+++.+ .....+|+++|
T Consensus 95 -------------------~~i~~~~~~-~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~---~~~~~~il~~n--- 148 (340)
T 1sxj_C 95 -------------------NQIKDFAST-RQIFSKGFKLIILDEADAMTNAAQNALRRVIERY---TKNTRFCVLAN--- 148 (340)
T ss_dssp -------------------THHHHHHHB-CCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHT---TTTEEEEEEES---
T ss_pred -------------------HHHHHHHhh-cccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcC---CCCeEEEEEec---
Confidence 111111110 0001123689999999999877778888887764 24566777788
Q ss_pred cchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 010136 284 LADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRSAI 358 (517)
Q Consensus 284 ~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~ 358 (517)
....+.+.+.|| | ..+.|.+++.+++.+++...+... ...+++++++.+++ .+.||+|+++++++.+.
T Consensus 149 ~~~~i~~~i~sR-~--~~~~~~~l~~~~~~~~l~~~~~~~-~~~i~~~~~~~i~~---~s~G~~r~~~~~l~~~~ 216 (340)
T 1sxj_C 149 YAHKLTPALLSQ-C--TRFRFQPLPQEAIERRIANVLVHE-KLKLSPNAEKALIE---LSNGDMRRVLNVLQSCK 216 (340)
T ss_dssp CGGGSCHHHHTT-S--EEEECCCCCHHHHHHHHHHHHHTT-TCCBCHHHHHHHHH---HHTTCHHHHHHHTTTTT
T ss_pred CccccchhHHhh-c--eeEeccCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHH---HcCCCHHHHHHHHHHHH
Confidence 466788999999 7 689999999999999999887432 13688999998887 47899999999997664
No 43
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.76 E-value=1.4e-17 Score=165.90 Aligned_cols=192 Identities=20% Similarity=0.262 Sum_probs=139.1
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFS 203 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~ 203 (517)
++++|++..++.+..++.. +..++++|+||||||||++++.+++.+..... ...+++++|........+
T Consensus 25 ~~~~g~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~-----~~~~~~~~~~~~~~~~~~-- 93 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKT----GSMPHLLFAGPPGVGKTTAALALARELFGENW-----RHNFLELNASDERGINVI-- 93 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHH----TCCCEEEEESCTTSSHHHHHHHHHHHHHGGGH-----HHHEEEEETTCHHHHHTT--
T ss_pred HHhhCCHHHHHHHHHHHHc----CCCCeEEEECcCCCCHHHHHHHHHHHhcCCcc-----cCceEEeeccccCchHHH--
Confidence 5799999999888877654 45567999999999999999999998753210 024788888653211111
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCCC
Q 010136 204 KILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAID 283 (517)
Q Consensus 204 ~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~ 283 (517)
...+...... .......+.||||||+|.+....++.|..+++.. ...+.+|+++|.
T Consensus 94 ------------------~~~~~~~~~~-~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~---~~~~~~i~~~~~-- 149 (327)
T 1iqp_A 94 ------------------REKVKEFART-KPIGGASFKIIFLDEADALTQDAQQALRRTMEMF---SSNVRFILSCNY-- 149 (327)
T ss_dssp ------------------HHHHHHHHHS-CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHT---TTTEEEEEEESC--
T ss_pred ------------------HHHHHHHHhh-CCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhc---CCCCeEEEEeCC--
Confidence 1112222210 0001245689999999999877777888877763 346677777884
Q ss_pred cchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 010136 284 LADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRSAI 358 (517)
Q Consensus 284 ~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~ 358 (517)
+..+.+.+.+| + ..+.|+|++.+++..++..++... ...+++++++.+++ ...||+|.++++++.+.
T Consensus 150 -~~~l~~~l~sr-~--~~~~~~~l~~~~~~~~l~~~~~~~-~~~~~~~~~~~l~~---~~~g~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 150 -SSKIIEPIQSR-C--AIFRFRPLRDEDIAKRLRYIAENE-GLELTEEGLQAILY---IAEGDMRRAINILQAAA 216 (327)
T ss_dssp -GGGSCHHHHHT-E--EEEECCCCCHHHHHHHHHHHHHTT-TCEECHHHHHHHHH---HHTTCHHHHHHHHHHHH
T ss_pred -ccccCHHHHhh-C--cEEEecCCCHHHHHHHHHHHHHhc-CCCCCHHHHHHHHH---HCCCCHHHHHHHHHHHH
Confidence 55678888888 6 589999999999999999887642 23588999999887 46899999999998765
No 44
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.76 E-value=8.5e-18 Score=178.24 Aligned_cols=205 Identities=18% Similarity=0.253 Sum_probs=138.8
Q ss_pred cCCCC---CCCCCcHHHHHHHHHHHHHhhcc-------------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCC
Q 010136 119 VSTAP---STIVCREDEQKKVLEFCKKNLEE-------------EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGL 182 (517)
Q Consensus 119 ~~~~p---~~l~gRe~e~~~l~~~L~~~l~~-------------~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~ 182 (517)
+.|.| ++++|++.+++.+..++..+... +...+++|+||||||||+++++++++++
T Consensus 31 ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~-------- 102 (516)
T 1sxj_A 31 VKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG-------- 102 (516)
T ss_dssp HHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--------
T ss_pred cccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--------
Confidence 34455 57999999999999999875422 1356899999999999999999998873
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhh--hccCCCceEEEEEeCcchhcccCc---h
Q 010136 183 QQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQK--LHSSVMKMMLIIADELDYLITRDR---A 257 (517)
Q Consensus 183 ~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~vI~iDEiD~L~~~~~---~ 257 (517)
+.++++||....+...+...+...+. ... +..+|... .......+.||||||+|.+....+ .
T Consensus 103 --~~~i~in~s~~~~~~~~~~~i~~~~~-~~~----------~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~ 169 (516)
T 1sxj_A 103 --YDILEQNASDVRSKTLLNAGVKNALD-NMS----------VVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVG 169 (516)
T ss_dssp --CEEEEECTTSCCCHHHHHHTGGGGTT-BCC----------STTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHH
T ss_pred --CCEEEEeCCCcchHHHHHHHHHHHhc-ccc----------HHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHH
Confidence 57999999998776543222211111 000 00111100 011245678999999999987766 3
Q ss_pred HHHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHH
Q 010136 258 VLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCA 337 (517)
Q Consensus 258 ~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia 337 (517)
.|..+++. ....+ |+++|+.... ..+.+.++ + ..+.|++++.+++.++|...+... ...+++++++.++
T Consensus 170 ~L~~~l~~---~~~~i--Ili~~~~~~~--~l~~l~~r-~--~~i~f~~~~~~~~~~~L~~i~~~~-~~~i~~~~l~~la 238 (516)
T 1sxj_A 170 QLAQFCRK---TSTPL--ILICNERNLP--KMRPFDRV-C--LDIQFRRPDANSIKSRLMTIAIRE-KFKLDPNVIDRLI 238 (516)
T ss_dssp HHHHHHHH---CSSCE--EEEESCTTSS--TTGGGTTT-S--EEEECCCCCHHHHHHHHHHHHHHH-TCCCCTTHHHHHH
T ss_pred HHHHHHHh---cCCCE--EEEEcCCCCc--cchhhHhc-e--EEEEeCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHH
Confidence 44444443 23344 4445654321 23455555 5 689999999999999998776532 2358899999988
Q ss_pred HHHHHHhCCHHHHHHHHHHHH
Q 010136 338 RKVAAASGDMRKALSVCRSAI 358 (517)
Q Consensus 338 ~~~~~~~Gd~R~al~ll~~A~ 358 (517)
+ ...||+|.++++++.+.
T Consensus 239 ~---~s~GdiR~~i~~L~~~~ 256 (516)
T 1sxj_A 239 Q---TTRGDIRQVINLLSTIS 256 (516)
T ss_dssp H---HTTTCHHHHHHHHTHHH
T ss_pred H---HcCCcHHHHHHHHHHHH
Confidence 7 46899999999997654
No 45
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.75 E-value=4.3e-17 Score=154.64 Aligned_cols=207 Identities=20% Similarity=0.195 Sum_probs=134.0
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFS 203 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~ 203 (517)
+.++||+.+++.+..++.. +..+..++|+||||+|||++++.+++.+.... .+....|....+. .
T Consensus 23 ~~~~g~~~~~~~l~~~l~~---~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~--------~~~~~~~~~~~~~----~ 87 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSL---GRIHHAYLFSGTRGVGKTSIARLLAKGLNCET--------GITATPCGVCDNC----R 87 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHH---TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTT--------CSCSSCCSCSHHH----H
T ss_pred HHHhCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCC--------CCCCCCCcccHHH----H
Confidence 4689999999999888765 22345799999999999999999998875311 0111111111000 0
Q ss_pred HHHHHhCCCC-C-CCCCCCHHHHHHHHHHhhh-ccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEEC
Q 010136 204 KILLKLQPRK-K-LNGSTSPLQYLQNLYSQKL-HSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIAN 280 (517)
Q Consensus 204 ~i~~~l~~~~-~-~~~~~~~~~~l~~~~~~~~-~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian 280 (517)
.+........ . ..........+..++.... .....++.+|||||+|.+....++.|..+++.. ...+.+|+++|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~---~~~~~~i~~t~ 164 (250)
T 1njg_A 88 EIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP---PEHVKFLLATT 164 (250)
T ss_dssp HHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSC---CTTEEEEEEES
T ss_pred HHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcC---CCceEEEEEeC
Confidence 0000000000 0 0000111333444444211 112345789999999998665556666666542 35678888888
Q ss_pred CCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 010136 281 AIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRSAI 358 (517)
Q Consensus 281 ~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~ 358 (517)
. ...+.+.+.+| + ..+.|+|++.+++.+++..++... ...+++++++.+++ ...|++|.+.++|+.|+
T Consensus 165 ~---~~~~~~~l~~r-~--~~i~l~~l~~~e~~~~l~~~~~~~-~~~~~~~~~~~l~~---~~~G~~~~~~~~~~~~~ 232 (250)
T 1njg_A 165 D---PQKLPVTILSR-C--LQFHLKALDVEQIRHQLEHILNEE-HIAHEPRALQLLAR---AAEGSLRDALSLTDQAI 232 (250)
T ss_dssp C---GGGSCHHHHTT-S--EEEECCCCCHHHHHHHHHHHHHHT-TCCBCHHHHHHHHH---HHTTCHHHHHHHHHHHH
T ss_pred C---hHhCCHHHHHH-h--hhccCCCCCHHHHHHHHHHHHHhc-CCCCCHHHHHHHHH---HcCCCHHHHHHHHHHHH
Confidence 5 45567778887 5 699999999999999999888642 23678888888877 46899999999999885
No 46
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.75 E-value=3.4e-18 Score=162.59 Aligned_cols=198 Identities=17% Similarity=0.156 Sum_probs=136.8
Q ss_pred HHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCC
Q 010136 137 LEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLN 216 (517)
Q Consensus 137 ~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~ 216 (517)
...+..+.......+++|+||||||||++++.+++.+... + ..++++++..+....
T Consensus 40 ~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~----~---~~~~~~~~~~~~~~~----------------- 95 (242)
T 3bos_A 40 IGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL----E---RRSFYIPLGIHASIS----------------- 95 (242)
T ss_dssp HHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT----T---CCEEEEEGGGGGGSC-----------------
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc----C---CeEEEEEHHHHHHHH-----------------
Confidence 3344444444567899999999999999999999987642 2 468888886542110
Q ss_pred CCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC--chHHHHHhccCCCCCCcEEEEEEECCC-Ccchhhccccc
Q 010136 217 GSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD--RAVLHDLFMLTTFPFSRFILIGIANAI-DLADRFLPRLQ 293 (517)
Q Consensus 217 ~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~--~~~L~~l~~~~~~~~~~v~lI~ian~~-~~~~~l~~~l~ 293 (517)
...+. ....+.+|||||+|.+.... ++.|+.+++..... ..+.+|.++|.. +....+++++.
T Consensus 96 ---------~~~~~-----~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~-~~~~ii~~~~~~~~~~~~~~~~l~ 160 (242)
T 3bos_A 96 ---------TALLE-----GLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQ-KRGSLIVSASASPMEAGFVLPDLV 160 (242)
T ss_dssp ---------GGGGT-----TGGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHH-CSCEEEEEESSCTTTTTCCCHHHH
T ss_pred ---------HHHHH-----hccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHc-CCCeEEEEcCCCHHHHHHhhhhhh
Confidence 00111 12345799999999997665 66677776543211 223244445532 12223457788
Q ss_pred ccCC-CceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 010136 294 SMNC-KPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRSAIEILEAEMRESVSKM 372 (517)
Q Consensus 294 sr~~-~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~~a~~~~~~~~~~~ 372 (517)
+| + ....+.|++++.+++.+++..++.... ..+++++++++++ ...||+|.+.++++.+...|..++.
T Consensus 161 ~r-~~~~~~i~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~---~~~g~~r~l~~~l~~~~~~a~~~~~------ 229 (242)
T 3bos_A 161 SR-MHWGLTYQLQPMMDDEKLAALQRRAAMRG-LQLPEDVGRFLLN---RMARDLRTLFDVLDRLDKASMVHQR------ 229 (242)
T ss_dssp HH-HHHSEEEECCCCCGGGHHHHHHHHHHHTT-CCCCHHHHHHHHH---HTTTCHHHHHHHHHHHHHHHHHHTC------
T ss_pred hH-hhcCceEEeCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHH---HccCCHHHHHHHHHHHHHHHHHhCC------
Confidence 77 4 236899999999999999998886432 3688999999887 4689999999999999887754332
Q ss_pred ccccccccchhhhhhhhhhccCccccHHHHHHHHH
Q 010136 373 NSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALS 407 (517)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~ 407 (517)
.|+.++|.+++.
T Consensus 230 -----------------------~It~~~v~~~l~ 241 (242)
T 3bos_A 230 -----------------------KLTIPFVKEMLR 241 (242)
T ss_dssp -----------------------CCCHHHHHHHHT
T ss_pred -----------------------CCcHHHHHHHhh
Confidence 699999998874
No 47
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.73 E-value=1.2e-17 Score=162.35 Aligned_cols=199 Identities=14% Similarity=0.151 Sum_probs=133.1
Q ss_pred CCCCCCCCcHHHHHHHHHH---HHHhhc---cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCC
Q 010136 121 TAPSTIVCREDEQKKVLEF---CKKNLE---EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTS 194 (517)
Q Consensus 121 ~~p~~l~gRe~e~~~l~~~---L~~~l~---~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~ 194 (517)
++++.++|++..++.+... +...+. ...+.+++|+||||||||++++++++.+. ..+++++|..
T Consensus 30 ~~~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~----------~~~~~i~~~~ 99 (272)
T 1d2n_A 30 YIMNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN----------FPFIKICSPD 99 (272)
T ss_dssp TCTTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT----------CSEEEEECGG
T ss_pred HHhcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC----------CCEEEEeCHH
Confidence 3456788998888888774 343443 34567899999999999999999998753 4688898864
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhccc------Cc----hHHHHHhc
Q 010136 195 LTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITR------DR----AVLHDLFM 264 (517)
Q Consensus 195 ~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~------~~----~~L~~l~~ 264 (517)
... +. ........+...|... ....+.+|||||+|.|... .+ +.|..+++
T Consensus 100 ~~~-------------g~----~~~~~~~~~~~~~~~~---~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~ 159 (272)
T 1d2n_A 100 KMI-------------GF----SETAKCQAMKKIFDDA---YKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLK 159 (272)
T ss_dssp GCT-------------TC----CHHHHHHHHHHHHHHH---HTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTT
T ss_pred Hhc-------------CC----chHHHHHHHHHHHHHH---HhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhc
Confidence 110 00 0000123455555521 1345789999999998432 22 33444444
Q ss_pred cCCCCCCcEEEEEEECCCCcchhhcc-cccccCCCceEEEeCCCCH-HHHHHHHHHHHhhhccCCCChhHHHHHHHHHHH
Q 010136 265 LTTFPFSRFILIGIANAIDLADRFLP-RLQSMNCKPLVVTFRAYSK-DQIIRILQERLMELSYIVFQPQALELCARKVAA 342 (517)
Q Consensus 265 ~~~~~~~~v~lI~ian~~~~~~~l~~-~l~sr~~~~~~i~f~p~~~-~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~ 342 (517)
.......++++|+++|. ++.+++ .+.+| | ...|.|++++. +++..++... ..+++++++.+++.+.+
T Consensus 160 ~~~~~~~~~~ii~ttn~---~~~l~~~~l~~r-f-~~~i~~p~l~~r~~i~~i~~~~------~~~~~~~~~~l~~~~~g 228 (272)
T 1d2n_A 160 KAPPQGRKLLIIGTTSR---KDVLQEMEMLNA-F-STTIHVPNIATGEQLLEALELL------GNFKDKERTTIAQQVKG 228 (272)
T ss_dssp CCCSTTCEEEEEEEESC---HHHHHHTTCTTT-S-SEEEECCCEEEHHHHHHHHHHH------TCSCHHHHHHHHHHHTT
T ss_pred CccCCCCCEEEEEecCC---hhhcchhhhhcc-c-ceEEcCCCccHHHHHHHHHHhc------CCCCHHHHHHHHHHhcC
Confidence 33335568889999995 444555 56676 5 36899999987 7777777642 35788999999885433
Q ss_pred H--hCCHHHHHHHHHHHHHH
Q 010136 343 A--SGDMRKALSVCRSAIEI 360 (517)
Q Consensus 343 ~--~Gd~R~al~ll~~A~~~ 360 (517)
+ .|++|.++++++.|...
T Consensus 229 ~~~~g~ir~l~~~l~~a~~~ 248 (272)
T 1d2n_A 229 KKVWIGIKKLLMLIEMSLQM 248 (272)
T ss_dssp SEEEECHHHHHHHHHHHTTS
T ss_pred CCccccHHHHHHHHHHHhhh
Confidence 2 44899999999888643
No 48
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.73 E-value=1.7e-17 Score=172.18 Aligned_cols=233 Identities=15% Similarity=0.189 Sum_probs=154.4
Q ss_pred hhcCcCCCCCCCC-CcHHHHHHHHHHHHHhhccCC-CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeC
Q 010136 115 EALHVSTAPSTIV-CREDEQKKVLEFCKKNLEEEK-AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINC 192 (517)
Q Consensus 115 ~~l~~~~~p~~l~-gRe~e~~~l~~~L~~~l~~~~-~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~ 192 (517)
..|.+.+.+++++ |..... ....+........ .++++|+||||||||++++++++.+.... +...+++++|
T Consensus 96 ~~l~~~~tfd~fv~g~~n~~--a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~-----~~~~v~~v~~ 168 (440)
T 2z4s_A 96 TPLNPDYTFENFVVGPGNSF--AYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNE-----PDLRVMYITS 168 (440)
T ss_dssp CCCCTTCSGGGCCCCTTTHH--HHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHC-----CSSCEEEEEH
T ss_pred cCCCCCCChhhcCCCCchHH--HHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhC-----CCCeEEEeeH
Confidence 4577777888777 655443 2233333333322 67899999999999999999999876431 1246899988
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcc--cCchHHHHHhccCCCCC
Q 010136 193 TSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLIT--RDRAVLHDLFMLTTFPF 270 (517)
Q Consensus 193 ~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~--~~~~~L~~l~~~~~~~~ 270 (517)
..+ ...+...+... . ...+...+ ...+.||||||+|.+.. ..++.|+.+++.....
T Consensus 169 ~~~------~~~~~~~~~~~-------~-~~~~~~~~-------~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~- 226 (440)
T 2z4s_A 169 EKF------LNDLVDSMKEG-------K-LNEFREKY-------RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDS- 226 (440)
T ss_dssp HHH------HHHHHHHHHTT-------C-HHHHHHHH-------TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTT-
T ss_pred HHH------HHHHHHHHHcc-------c-HHHHHHHh-------cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHC-
Confidence 653 23333333211 1 22222222 11457999999999986 3466677766543222
Q ss_pred CcEEEEEEECCCCcchhhcccccccCC-CceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHH
Q 010136 271 SRFILIGIANAIDLADRFLPRLQSMNC-KPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRK 349 (517)
Q Consensus 271 ~~v~lI~ian~~~~~~~l~~~l~sr~~-~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~ 349 (517)
...+||++.+.......+++++.+| | ....+.|.+++.+++.+||..++... ...+++++++++++ ...||+|.
T Consensus 227 ~~~iIitt~~~~~~l~~l~~~L~sR-~~~g~~i~l~~p~~e~r~~iL~~~~~~~-~~~i~~e~l~~la~---~~~gn~R~ 301 (440)
T 2z4s_A 227 GKQIVICSDREPQKLSEFQDRLVSR-FQMGLVAKLEPPDEETRKSIARKMLEIE-HGELPEEVLNFVAE---NVDDNLRR 301 (440)
T ss_dssp TCEEEEEESSCGGGCSSCCHHHHHH-HHSSBCCBCCCCCHHHHHHHHHHHHHHH-TCCCCTTHHHHHHH---HCCSCHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHHHhh-ccCCeEEEeCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHH---hcCCCHHH
Confidence 3445554333333233477889888 4 23478999999999999999888643 23688999999987 46899999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhc
Q 010136 350 ALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTF 410 (517)
Q Consensus 350 al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~ 410 (517)
+..+|..+...|...+. .|+.+++.+++....
T Consensus 302 l~~~L~~~~~~a~~~~~-----------------------------~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 302 LRGAIIKLLVYKETTGK-----------------------------EVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHHHHHHHHHHHHSSS-----------------------------CCCHHHHHHHTSTTT
T ss_pred HHHHHHHHHHHHHHhCC-----------------------------CCCHHHHHHHHHHHh
Confidence 99999999887764332 478888888776654
No 49
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.73 E-value=2.2e-16 Score=158.01 Aligned_cols=227 Identities=12% Similarity=0.159 Sum_probs=159.7
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFS 203 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~ 203 (517)
+.++|+++.++.+...+.. +.+++|+||||||||++++++++.+. ..++.++|.....+..++.
T Consensus 27 ~~i~g~~~~~~~l~~~l~~------~~~vll~G~pGtGKT~la~~la~~~~----------~~~~~i~~~~~~~~~~l~g 90 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICT------GGHILLEGVPGLAKTLSVNTLAKTMD----------LDFHRIQFTPDLLPSDLIG 90 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHH------TCCEEEESCCCHHHHHHHHHHHHHTT----------CCEEEEECCTTCCHHHHHE
T ss_pred cceeCcHHHHHHHHHHHHc------CCeEEEECCCCCcHHHHHHHHHHHhC----------CCeEEEecCCCCChhhcCC
Confidence 4689999988777776554 46899999999999999999988763 3578889876655554321
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCC--------CCCCcEEE
Q 010136 204 KILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTT--------FPFSRFIL 275 (517)
Q Consensus 204 ~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~--------~~~~~v~l 275 (517)
... + .. ..+. +. .....-...||||||+|.+....+..|..+++... ....++++
T Consensus 91 ~~~--~-~~---~~~~---------~~--~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~v 153 (331)
T 2r44_A 91 TMI--Y-NQ---HKGN---------FE--VKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLV 153 (331)
T ss_dssp EEE--E-ET---TTTE---------EE--EEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEE
T ss_pred cee--e-cC---CCCc---------eE--eccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEE
Confidence 110 0 00 0000 00 00000012599999999998777777777766421 12346788
Q ss_pred EEEECCCCcchh--hcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhh---------------------ccCCCChhH
Q 010136 276 IGIANAIDLADR--FLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMEL---------------------SYIVFQPQA 332 (517)
Q Consensus 276 I~ian~~~~~~~--l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~---------------------~~~~~~~~a 332 (517)
|+++|..+.... +++++.+| |. ..+.|.+++.++..+||+.++... ....+++++
T Consensus 154 iat~np~~~~~~~~l~~~l~~R-f~-~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~ 231 (331)
T 2r44_A 154 LATQNPVEQEGTYPLPEAQVDR-FM-MKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESL 231 (331)
T ss_dssp EEEECTTCCSCCCCCCHHHHTT-SS-EEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHH
T ss_pred EEecCCCcccCcccCCHHHHhh-ee-EEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHH
Confidence 888886553333 78899998 63 379999999999999999876531 134578889
Q ss_pred HHHHHHHHHHH--hC---------------CHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCc
Q 010136 333 LELCARKVAAA--SG---------------DMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNS 395 (517)
Q Consensus 333 i~~ia~~~~~~--~G---------------d~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (517)
++++++.+... .| ++|.++.+++.|..+|..+++.
T Consensus 232 ~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~---------------------------- 283 (331)
T 2r44_A 232 EKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRD---------------------------- 283 (331)
T ss_dssp HHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCS----------------------------
T ss_pred HHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCC----------------------------
Confidence 99988765432 22 5999999999999888877665
Q ss_pred cccHHHHHHHHHHhccCh
Q 010136 396 QVRVDHMAVALSNTFKSP 413 (517)
Q Consensus 396 ~Vt~~~v~~a~~~~~~~~ 413 (517)
.|+.+||.+|+..+....
T Consensus 284 ~v~~~dv~~~~~~vl~~r 301 (331)
T 2r44_A 284 YVLPEDIKEVAYDILNHR 301 (331)
T ss_dssp BCCHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHhHhh
Confidence 799999999999887655
No 50
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.72 E-value=1.2e-16 Score=162.28 Aligned_cols=205 Identities=20% Similarity=0.208 Sum_probs=134.1
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFS 203 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~ 203 (517)
++++|++.+++.+...+.. +..+..++|+||||||||++++.+++.+..... .....|....+ +.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~---~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~--------~~~~~~~~~~~----~~ 80 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSL---GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG--------ITATPCGVCDN----CR 80 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHH---TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTC--------SCSSCCSSSHH----HH
T ss_pred hhccCcHHHHHHHHHHHHh---CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCC--------CCCCCCcccHH----HH
Confidence 4699999999988888764 223456899999999999999999988753110 01111211110 00
Q ss_pred HHHHHhCCC-----CCCCCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEE
Q 010136 204 KILLKLQPR-----KKLNGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIG 277 (517)
Q Consensus 204 ~i~~~l~~~-----~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ 277 (517)
.+....... .....+. +.++.++... ......++.||||||+|.+....++.|..+++. +...+.+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~---~~~~~~~Il 154 (373)
T 1jr3_A 81 EIEQGRFVDLIEIDAASRTKV---EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE---PPEHVKFLL 154 (373)
T ss_dssp HHHTSCCSSCEEEETTCSCCS---SCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHS---CCSSEEEEE
T ss_pred HHhccCCCceEEecccccCCH---HHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhc---CCCceEEEE
Confidence 111000000 0000011 1122333211 111234568999999999976666777777655 345788888
Q ss_pred EECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 010136 278 IANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRSA 357 (517)
Q Consensus 278 ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A 357 (517)
+++. ...+.+.+.+| + ..+.|.|++.+++.+++..++.... ..+++++++.+++ ...||+|.++++++.+
T Consensus 155 ~~~~---~~~l~~~l~sr-~--~~i~~~~l~~~~~~~~l~~~~~~~~-~~~~~~a~~~l~~---~~~G~~r~~~~~l~~~ 224 (373)
T 1jr3_A 155 ATTD---PQKLPVTILSR-C--LQFHLKALDVEQIRHQLEHILNEEH-IAHEPRALQLLAR---AAEGSLRDALSLTDQA 224 (373)
T ss_dssp EESC---GGGSCHHHHTT-S--EEEECCCCCHHHHHHHHHHHHHHHT-CCBCHHHHHHHHH---HSSSCHHHHHHHHHHH
T ss_pred EeCC---hHhCcHHHHhh-e--eEeeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHH---HCCCCHHHHHHHHHHH
Confidence 8884 45677888888 6 7999999999999999998886432 3678999998877 4689999999999887
Q ss_pred HH
Q 010136 358 IE 359 (517)
Q Consensus 358 ~~ 359 (517)
+.
T Consensus 225 ~~ 226 (373)
T 1jr3_A 225 IA 226 (373)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 51
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.72 E-value=4.9e-20 Score=178.92 Aligned_cols=226 Identities=16% Similarity=0.166 Sum_probs=144.3
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHhh--------ccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeC
Q 010136 121 TAPSTIVCREDEQKKVLEFCKKNL--------EEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINC 192 (517)
Q Consensus 121 ~~p~~l~gRe~e~~~l~~~L~~~l--------~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~ 192 (517)
+.+++++|.+..++.+...+.... ....+.+++|+||||||||++++++++++. ..+++++|
T Consensus 8 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~----------~~~~~v~~ 77 (268)
T 2r62_A 8 VRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH----------VPFFSMGG 77 (268)
T ss_dssp CCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT----------CCCCCCCS
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC----------CCEEEech
Confidence 445678999998888888765321 113356799999999999999999998763 35778888
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCc------------hHHH
Q 010136 193 TSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDR------------AVLH 260 (517)
Q Consensus 193 ~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~------------~~L~ 260 (517)
..+.+... +.. . ..+..+|... ....+.||||||+|.|..... ..+.
T Consensus 78 ~~~~~~~~----------~~~----~----~~~~~~~~~a---~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~ 136 (268)
T 2r62_A 78 SSFIEMFV----------GLG----A----SRVRDLFETA---KKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLN 136 (268)
T ss_dssp CTTTTSCS----------SSC----S----SSSSTTHHHH---HHSCSCEEEESCGGGTTC----------CCCSCSSTT
T ss_pred HHHHHhhc----------chH----H----HHHHHHHHHH---HhcCCeEEEEeChhhhcccccccccCCCchhHHHHHH
Confidence 76543210 100 0 0112223211 123467999999999975421 2233
Q ss_pred HHhcc---CCCCCCcEEEEEEECCCCcchhhccccccc-CCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHH
Q 010136 261 DLFML---TTFPFSRFILIGIANAIDLADRFLPRLQSM-NCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELC 336 (517)
Q Consensus 261 ~l~~~---~~~~~~~v~lI~ian~~~~~~~l~~~l~sr-~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~i 336 (517)
.++.. .......++||+++|. ++.+++.+.++ +|. ..+.|++++.+++.+||+..+..+. ..++..++.+
T Consensus 137 ~ll~~l~~~~~~~~~v~vi~ttn~---~~~ld~~l~r~~Rf~-~~i~i~~p~~~~r~~il~~~~~~~~--~~~~~~~~~l 210 (268)
T 2r62_A 137 QLLAEMDGFGSENAPVIVLAATNR---PEILDPALMRPGRFD-RQVLVDKPDFNGRVEILKVHIKGVK--LANDVNLQEV 210 (268)
T ss_dssp TTTTTTTCSSCSCSCCEEEECBSC---CTTSCGGGGSSSSSC-CCCBCCCCCTTTHHHHHHHHTSSSC--CCSSCCTTTT
T ss_pred HHHHHhhCcccCCCCEEEEEecCC---chhcCHhHcCCCCCC-eEEEecCcCHHHHHHHHHHHHhcCC--CCCccCHHHH
Confidence 34333 2223456899999995 45577787773 143 5899999999999999998876542 2223335556
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccCh
Q 010136 337 ARKVAAASGDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSP 413 (517)
Q Consensus 337 a~~~~~~~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~ 413 (517)
++..... ..|...++|+.|...|..++.. .|+.+|+..|+..+..+.
T Consensus 211 a~~~~g~--~g~dl~~l~~~a~~~a~~~~~~----------------------------~i~~~~~~~a~~~~~~~~ 257 (268)
T 2r62_A 211 AKLTAGL--AGADLANIINEAALLAGRNNQK----------------------------EVRQQHLKEAVERGIAGL 257 (268)
T ss_dssp TSSSCSS--CHHHHHHHHHHHHHTTSSSCCC----------------------------SCCHHHHHTSCTTCCCCC
T ss_pred HHHcCCC--CHHHHHHHHHHHHHHHHHhccC----------------------------CcCHHHHHHHHHHHhhcc
Confidence 5532222 2366667888888776543332 699999999988776554
No 52
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.71 E-value=5.9e-17 Score=169.16 Aligned_cols=223 Identities=13% Similarity=0.130 Sum_probs=151.8
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHhhc--------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeC
Q 010136 121 TAPSTIVCREDEQKKVLEFCKKNLE--------EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINC 192 (517)
Q Consensus 121 ~~p~~l~gRe~e~~~l~~~L~~~l~--------~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~ 192 (517)
+.+++++|.++...++.+.+..... ...+.+++|+||||||||+++++++..+. ..+++++|
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~----------~~~i~i~g 97 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR----------VPFITASG 97 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT----------CCEEEEEG
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC----------CCEEEEeh
Confidence 3456789999988888877654321 11255799999999999999999988753 36899999
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCc-----------hHHHH
Q 010136 193 TSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDR-----------AVLHD 261 (517)
Q Consensus 193 ~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~-----------~~L~~ 261 (517)
..+...+. + .....+..+|.. .....+.|+||||||.+....+ ..+..
T Consensus 98 ~~~~~~~~-----------------g-~~~~~v~~lfq~---a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~ 156 (499)
T 2dhr_A 98 SDFVEMFV-----------------G-VGAARVRDLFET---AKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQ 156 (499)
T ss_dssp GGGTSSCT-----------------T-HHHHHHHHHTTT---SSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHH
T ss_pred hHHHHhhh-----------------h-hHHHHHHHHHHH---HHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHH
Confidence 76533110 1 113445666652 1234578999999999865321 33445
Q ss_pred HhccC--CCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhH-HHHHHH
Q 010136 262 LFMLT--TFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQA-LELCAR 338 (517)
Q Consensus 262 l~~~~--~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~a-i~~ia~ 338 (517)
++... ......+++|+++|. ++.+++++.++......|.|++++.+++.+||+..+..+ .+++++ +..+|.
T Consensus 157 LL~~Ldg~~~~~~viviAatn~---p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~---~l~~dv~l~~lA~ 230 (499)
T 2dhr_A 157 LLVEMDGFEKDTAIVVMAATNR---PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK---PLAEDVDLALLAK 230 (499)
T ss_dssp HHHHGGGCCSSCCCEEEECCSC---GGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS---CCCCSSTTHHHHT
T ss_pred HHHHhcccccCccEEEEEecCC---hhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcC---CCChHHHHHHHHH
Confidence 54331 123356788888885 555888988853234699999999999999998766543 344333 667766
Q ss_pred HHHHHhCCH-HHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhcc
Q 010136 339 KVAAASGDM-RKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFK 411 (517)
Q Consensus 339 ~~~~~~Gd~-R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~ 411 (517)
...|.. |..-++|.+|+..|.+++.. .|+++|+.+|+..+..
T Consensus 231 ---~t~G~~gadL~~lv~~Aa~~A~~~~~~----------------------------~It~~dl~~al~~v~~ 273 (499)
T 2dhr_A 231 ---RTPGFVGADLENLLNEAALLAAREGRR----------------------------KITMKDLEEAADRVMM 273 (499)
T ss_dssp ---TSCSCCHHHHHHHHHHHHHHHTTTCCS----------------------------SCCSHHHHHHHHHHTT
T ss_pred ---hcCCCCHHHHHHHHHHHHHHHHHhCCC----------------------------ccCHHHHHHHHHHHhc
Confidence 456765 77778999998777654433 6888888888887654
No 53
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.69 E-value=1.2e-16 Score=158.36 Aligned_cols=223 Identities=16% Similarity=0.181 Sum_probs=152.2
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcc----CC-CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEE----EK-AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNT 198 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~----~~-~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~ 198 (517)
..++|++..++.+...+.....+ .. ..+++|+||||||||++++.+++.+.... ..+++++|..+...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~-------~~~~~~~~~~~~~~ 89 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE-------EAMIRIDMTEYMEK 89 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCG-------GGEEEEEGGGCCST
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCC-------cceEEeeccccccc
Confidence 35789999999999998876432 11 34799999999999999999999875311 35899999877654
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCC--------C
Q 010136 199 SEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFP--------F 270 (517)
Q Consensus 199 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~--------~ 270 (517)
... ..+ ++ ......+......+...+. .....||||||+|.+....+..|..+++..... -
T Consensus 90 ~~~-~~l---~g-~~~~~~~~~~~~~~~~~~~------~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~ 158 (311)
T 4fcw_A 90 HAV-SRL---IG-APPGYVGYEEGGQLTEAVR------RRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDF 158 (311)
T ss_dssp THH-HHH---HC-CCTTSTTTTTCCHHHHHHH------HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEEC
T ss_pred ccH-HHh---cC-CCCccccccccchHHHHHH------hCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEEC
Confidence 321 122 21 1111111111123444443 223469999999999877778888877653211 1
Q ss_pred CcEEEEEEECCC---------------Cc--------chhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhh----
Q 010136 271 SRFILIGIANAI---------------DL--------ADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMEL---- 323 (517)
Q Consensus 271 ~~v~lI~ian~~---------------~~--------~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~---- 323 (517)
.++++|+++|.. ++ ...+.+.+.+| | ...+.|.|++.+++..|+...+..+
T Consensus 159 ~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R-~-~~~~~~~p~~~~~~~~i~~~~l~~~~~~~ 236 (311)
T 4fcw_A 159 RNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNR-L-DEIVVFRPLTKEQIRQIVEIQMSYLRARL 236 (311)
T ss_dssp TTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTT-C-SEEEECCCCCHHHHHHHHHHHTHHHHHHH
T ss_pred CCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhc-C-CeEEEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 367799999962 11 34567888888 5 3589999999999999999877532
Q ss_pred ----ccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Q 010136 324 ----SYIVFQPQALELCARKVAAASGDMRKALSVCRSAIEILEAEMR 366 (517)
Q Consensus 324 ----~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~~a~~~~~ 366 (517)
....+++++++.+++......|++|...++++.++..+..+..
T Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i 283 (311)
T 4fcw_A 237 AEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKI 283 (311)
T ss_dssp HTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHH
T ss_pred HhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHH
Confidence 1246899999999874322268999999999888876655443
No 54
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.68 E-value=5e-16 Score=149.38 Aligned_cols=219 Identities=13% Similarity=0.131 Sum_probs=142.1
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHhhc--------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEe
Q 010136 120 STAPSTIVCREDEQKKVLEFCKKNLE--------EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSIN 191 (517)
Q Consensus 120 ~~~p~~l~gRe~e~~~l~~~L~~~l~--------~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn 191 (517)
.+.+++++|.++...++.......-. -..+.+++|+||||||||++++.++..+. ..+++++
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~----------~~~i~~~ 81 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR----------VPFITAS 81 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT----------CCEEEEE
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC----------CCEEEee
Confidence 34456788988887777666543211 12245699999999999999999987753 2578887
Q ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCc-----------hHHH
Q 010136 192 CTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDR-----------AVLH 260 (517)
Q Consensus 192 ~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~-----------~~L~ 260 (517)
+..+ .... .......+..+|... ....+.++|+||+|.+..... ..+.
T Consensus 82 ~~~~----------~~~~--------~~~~~~~i~~~~~~~---~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~ 140 (254)
T 1ixz_A 82 GSDF----------VEMF--------VGVGAARVRDLFETA---KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN 140 (254)
T ss_dssp HHHH----------HHSC--------TTHHHHHHHHHHHHH---TTSSSEEEEEETHHHHHC---------CHHHHHHHH
T ss_pred HHHH----------HHHH--------hhHHHHHHHHHHHHH---HhcCCeEEEehhhhhhhcccCccccccchHHHHHHH
Confidence 6431 1100 011133455556521 234568999999998864321 2233
Q ss_pred HHhcc-C-CCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChh-HHHHHH
Q 010136 261 DLFML-T-TFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQ-ALELCA 337 (517)
Q Consensus 261 ~l~~~-~-~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~-ai~~ia 337 (517)
.++.. . ......+++++++|. ++.+++.+.++......+.|++++.++..+||+..+.++ .+.++ .+..++
T Consensus 141 ~ll~~l~g~~~~~~~i~~a~t~~---p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~---~~~~~~~~~~la 214 (254)
T 1ixz_A 141 QLLVEMDGFEKDTAIVVMAATNR---PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK---PLAEDVDLALLA 214 (254)
T ss_dssp HHHHHHHTCCTTCCEEEEEEESC---GGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTS---CBCTTCCHHHHH
T ss_pred HHHHHHhCCCCCCCEEEEEccCC---chhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCC---CCCcccCHHHHH
Confidence 33322 1 122346788888885 566889998853234699999999999999999776654 33333 367776
Q ss_pred HHHHHHhCCH-HHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHH
Q 010136 338 RKVAAASGDM-RKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVAL 406 (517)
Q Consensus 338 ~~~~~~~Gd~-R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~ 406 (517)
+ ...|.. |...++|+.|...|..++.. .|+++|+.+|+
T Consensus 215 ~---~~~G~~~~dl~~~~~~a~~~a~~~~~~----------------------------~I~~~dl~~a~ 253 (254)
T 1ixz_A 215 K---RTPGFVGADLENLLNEAALLAAREGRR----------------------------KITMKDLEEAA 253 (254)
T ss_dssp H---TCTTCCHHHHHHHHHHHHHHHHHTTCS----------------------------SBCHHHHHHHT
T ss_pred H---HcCCCCHHHHHHHHHHHHHHHHHhcCC----------------------------CcCHHHHHHHh
Confidence 6 345643 67778999998887765433 69999998875
No 55
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.67 E-value=4.8e-15 Score=148.36 Aligned_cols=189 Identities=13% Similarity=0.185 Sum_probs=127.4
Q ss_pred CCcHHHHHHHHHHHHHhhccCC-CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCC--------------CCceEEEEe
Q 010136 127 VCREDEQKKVLEFCKKNLEEEK-AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGL--------------QQPEVFSIN 191 (517)
Q Consensus 127 ~gRe~e~~~l~~~L~~~l~~~~-~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~--------------~~~~~v~vn 191 (517)
+-+++.++.+... +..++ +..++|+||||+|||++++.+++.+.......+. ..+.+.+++
T Consensus 5 pw~~~~~~~l~~~----i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~ 80 (334)
T 1a5t_A 5 PWLRPDFEKLVAS----YQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLA 80 (334)
T ss_dssp GGGHHHHHHHHHH----HHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEEC
T ss_pred CchHHHHHHHHHH----HHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEe
Confidence 3445544444444 44444 4459999999999999999999988632110000 002234444
Q ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhh-ccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCC
Q 010136 192 CTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKL-HSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPF 270 (517)
Q Consensus 192 ~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~ 270 (517)
.... ......+.++.++.... ....++..|+||||+|.|....++.|...++. +.
T Consensus 81 ~~~~---------------------~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEe---p~ 136 (334)
T 1a5t_A 81 PEKG---------------------KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEE---PP 136 (334)
T ss_dssp CCTT---------------------CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTS---CC
T ss_pred cccc---------------------CCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcC---CC
Confidence 3200 00111333444443211 11234578999999999987767777777765 34
Q ss_pred CcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHH
Q 010136 271 SRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKA 350 (517)
Q Consensus 271 ~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~a 350 (517)
.++++|+++|. ++.+.+.++|| | ..+.|++++.+++.++|..+. .+++++++.+++ .+.||+|.|
T Consensus 137 ~~~~~Il~t~~---~~~l~~ti~SR-c--~~~~~~~~~~~~~~~~L~~~~------~~~~~~~~~l~~---~s~G~~r~a 201 (334)
T 1a5t_A 137 AETWFFLATRE---PERLLATLRSR-C--RLHYLAPPPEQYAVTWLSREV------TMSQDALLAALR---LSAGSPGAA 201 (334)
T ss_dssp TTEEEEEEESC---GGGSCHHHHTT-S--EEEECCCCCHHHHHHHHHHHC------CCCHHHHHHHHH---HTTTCHHHH
T ss_pred CCeEEEEEeCC---hHhCcHHHhhc-c--eeeeCCCCCHHHHHHHHHHhc------CCCHHHHHHHHH---HcCCCHHHH
Confidence 57888888885 57789999999 7 689999999999999998764 568888888876 578999999
Q ss_pred HHHHHHHH
Q 010136 351 LSVCRSAI 358 (517)
Q Consensus 351 l~ll~~A~ 358 (517)
+++++.+.
T Consensus 202 ~~~l~~~~ 209 (334)
T 1a5t_A 202 LALFQGDN 209 (334)
T ss_dssp HHTTSSHH
T ss_pred HHHhccch
Confidence 99987654
No 56
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.66 E-value=7.2e-16 Score=150.34 Aligned_cols=218 Identities=13% Similarity=0.134 Sum_probs=142.0
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHhhc--------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeC
Q 010136 121 TAPSTIVCREDEQKKVLEFCKKNLE--------EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINC 192 (517)
Q Consensus 121 ~~p~~l~gRe~e~~~l~~~L~~~l~--------~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~ 192 (517)
+.+++++|.++..+++.......-. -..+.+++|+||||||||++++.++..+. ..++++++
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~----------~~~i~~~~ 106 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR----------VPFITASG 106 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT----------CCEEEEEH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC----------CCEEEecH
Confidence 4456788998888777766543211 11245699999999999999999987753 35788887
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC-----------chHHHH
Q 010136 193 TSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD-----------RAVLHD 261 (517)
Q Consensus 193 ~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~-----------~~~L~~ 261 (517)
..+ .... .......+..+|... ....+.++|+||+|.+.... ...+..
T Consensus 107 ~~~----------~~~~--------~~~~~~~i~~~~~~~---~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ 165 (278)
T 1iy2_A 107 SDF----------VEMF--------VGVGAARVRDLFETA---KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQ 165 (278)
T ss_dssp HHH----------HHST--------TTHHHHHHHHHHHHH---HTSCSEEEEEETHHHHHCC--------CHHHHHHHHH
T ss_pred HHH----------HHHH--------hhHHHHHHHHHHHHH---HhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHH
Confidence 432 1100 001133455555521 12356899999999886431 123334
Q ss_pred Hhcc-C-CCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChh-HHHHHHH
Q 010136 262 LFML-T-TFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQ-ALELCAR 338 (517)
Q Consensus 262 l~~~-~-~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~-ai~~ia~ 338 (517)
++.. . ......+++++++|. ++.+++.+.++......+.|++++.+++.+||+..+... .++++ .+..++.
T Consensus 166 ll~~lsgg~~~~~~i~~a~t~~---p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~---~~~~~~~~~~la~ 239 (278)
T 1iy2_A 166 LLVEMDGFEKDTAIVVMAATNR---PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK---PLAEDVDLALLAK 239 (278)
T ss_dssp HHHHHTTCCTTCCEEEEEEESC---TTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS---CBCTTCCHHHHHH
T ss_pred HHHHHhCCCCCCCEEEEEecCC---chhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccC---CCCcccCHHHHHH
Confidence 4332 1 112345788888885 455788888742234599999999999999999877653 33333 3666666
Q ss_pred HHHHHhCCH-HHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHH
Q 010136 339 KVAAASGDM-RKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVAL 406 (517)
Q Consensus 339 ~~~~~~Gd~-R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~ 406 (517)
...|.. |....+|+.|+..|..++.. .|+++|+.+|+
T Consensus 240 ---~~~G~~~~dl~~l~~~a~~~a~~~~~~----------------------------~I~~~dl~~a~ 277 (278)
T 1iy2_A 240 ---RTPGFVGADLENLLNEAALLAAREGRR----------------------------KITMKDLEEAA 277 (278)
T ss_dssp ---TCTTCCHHHHHHHHHHHHHHHHHTTCC----------------------------SBCHHHHHHHT
T ss_pred ---HcCCCCHHHHHHHHHHHHHHHHHhCCC----------------------------CcCHHHHHHHh
Confidence 456655 56667899998887765443 69999998875
No 57
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.66 E-value=1.7e-15 Score=147.04 Aligned_cols=212 Identities=16% Similarity=0.113 Sum_probs=130.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQN 227 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~ 227 (517)
.+.+++|+||||||||+++++++..+. ..++++++..+.+.+. + .....+..
T Consensus 43 ~~~GvlL~Gp~GtGKTtLakala~~~~----------~~~i~i~g~~l~~~~~-----------------~-~~~~~i~~ 94 (274)
T 2x8a_A 43 TPAGVLLAGPPGCGKTLLAKAVANESG----------LNFISVKGPELLNMYV-----------------G-ESERAVRQ 94 (274)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTT----------CEEEEEETTTTCSSTT-----------------H-HHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHcC----------CCEEEEEcHHHHhhhh-----------------h-HHHHHHHH
Confidence 355699999999999999999988653 3689999887644221 0 01334555
Q ss_pred HHHhhhccCCCceEEEEEeCcchhcccC--------chHHHHHhcc-C-CCCCCcEEEEEEECCCCcchhhcccccc--c
Q 010136 228 LYSQKLHSSVMKMMLIIADELDYLITRD--------RAVLHDLFML-T-TFPFSRFILIGIANAIDLADRFLPRLQS--M 295 (517)
Q Consensus 228 ~~~~~~~~~~~~~~vI~iDEiD~L~~~~--------~~~L~~l~~~-~-~~~~~~v~lI~ian~~~~~~~l~~~l~s--r 295 (517)
+|... ....+.++|+||+|.+.... ...+..++.. . ......+++++++|. ++.+++.+.+ |
T Consensus 95 vf~~a---~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~---p~~LD~al~r~gR 168 (274)
T 2x8a_A 95 VFQRA---KNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNR---PDIIDPAILRPGR 168 (274)
T ss_dssp HHHHH---HHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESC---GGGSCHHHHSTTS
T ss_pred HHHHH---HhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCC---hhhCCHhhcCccc
Confidence 55521 12357899999999986431 1223333322 1 123356888899995 6667888887 4
Q ss_pred CCCceEEEeCCCCHHHHHHHHHHHHhhhccCCC-ChhHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 010136 296 NCKPLVVTFRAYSKDQIIRILQERLMELSYIVF-QPQALELCARKVAAASG-DMRKALSVCRSAIEILEAEMRESVSKMN 373 (517)
Q Consensus 296 ~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~-~~~ai~~ia~~~~~~~G-d~R~al~ll~~A~~~a~~~~~~~~~~~~ 373 (517)
| ...|.|+.++.++..+||+..+.......+ .+..++.+|.... ..| .....-.+|++|+..|.++.........
T Consensus 169 -f-d~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~sgadl~~l~~~a~~~a~~~~~~~~~~~~ 245 (274)
T 2x8a_A 169 -L-DKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLR-CDCYTGADLSALVREASICALRQEMARQKSGN 245 (274)
T ss_dssp -S-CEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSG-GGSCCHHHHHHHHHHHHHHHHHHHC-------
T ss_pred -C-CeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhc-cCCcCHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 5 469999999999999999977643211122 2333566665321 112 2334446889998877665322110000
Q ss_pred cccccccchhhhhhhhhhccCccccHHHHHHHHHHhccCh
Q 010136 374 SASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSP 413 (517)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~ 413 (517)
.. ....|+++||.+|+..+..+.
T Consensus 246 ---~~--------------~~~~i~~~df~~al~~~~ps~ 268 (274)
T 2x8a_A 246 ---EK--------------GELKVSHKHFEEAFKKVRSSI 268 (274)
T ss_dssp ---------------------CCBCHHHHHHHHTTCCCCC
T ss_pred ---cc--------------cCCeecHHHHHHHHHHhcCCC
Confidence 00 011699999999999987764
No 58
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.65 E-value=2.6e-15 Score=151.51 Aligned_cols=213 Identities=16% Similarity=0.204 Sum_probs=134.6
Q ss_pred cCcCCCC---CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCC----------
Q 010136 117 LHVSTAP---STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQ---------- 183 (517)
Q Consensus 117 l~~~~~p---~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~---------- 183 (517)
|...|.| ++++|++..++.+..++. ..+..++++|+||+|+|||++++.+++.+.... .|..
T Consensus 4 w~~kyrP~~~~~~vg~~~~~~~l~~~~~---~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~--~g~i~~~~~~~~~~ 78 (354)
T 1sxj_E 4 WVDKYRPKSLNALSHNEELTNFLKSLSD---QPRDLPHLLLYGPNGTGKKTRCMALLESIFGPG--VYRLKIDVRQFVTA 78 (354)
T ss_dssp CTTTTCCCSGGGCCSCHHHHHHHHTTTT---CTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTT--CCC-----------
T ss_pred chhccCCCCHHHhcCCHHHHHHHHHHHh---hCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCC--CCeEEecceeeccc
Confidence 4556666 468999987665555431 445556699999999999999999998763210 0000
Q ss_pred -----------CceEEEEeCCCCCCH-HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccC-CCceEEEEEeCcch
Q 010136 184 -----------QPEVFSINCTSLTNT-SEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSS-VMKMMLIIADELDY 250 (517)
Q Consensus 184 -----------~~~~v~vn~~~~~s~-~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~vI~iDEiD~ 250 (517)
...++++++...... ......+...+....... ..+ .+ .. ..++.||||||++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------~~~--~l-----s~l~~~~~vlilDE~~~ 145 (354)
T 1sxj_E 79 SNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVD------FQD--SK-----DGLAHRYKCVIINEANS 145 (354)
T ss_dssp -------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC-------------------------CCEEEEEECTTS
T ss_pred ccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhcccc------ccc--cc-----cccCCCCeEEEEeCccc
Confidence 001333443221100 001122222221100000 000 00 01 23567999999999
Q ss_pred hcccCchHHHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCC-
Q 010136 251 LITRDRAVLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQ- 329 (517)
Q Consensus 251 L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~- 329 (517)
|....++.|..+++... ....+|.+++. +..+.+.+.|| | ..+.|+|++.+++.++|...+... ...++
T Consensus 146 L~~~~~~~L~~~le~~~---~~~~~Il~t~~---~~~l~~~l~sR-~--~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~ 215 (354)
T 1sxj_E 146 LTKDAQAALRRTMEKYS---KNIRLIMVCDS---MSPIIAPIKSQ-C--LLIRCPAPSDSEISTILSDVVTNE-RIQLET 215 (354)
T ss_dssp SCHHHHHHHHHHHHHST---TTEEEEEEESC---SCSSCHHHHTT-S--EEEECCCCCHHHHHHHHHHHHHHH-TCEECC
T ss_pred cCHHHHHHHHHHHHhhc---CCCEEEEEeCC---HHHHHHHHHhh-c--eEEecCCcCHHHHHHHHHHHHHHc-CCCCCc
Confidence 87666777888777642 35677777885 44577889998 7 799999999999999999887642 23578
Q ss_pred hhHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 010136 330 PQALELCARKVAAASGDMRKALSVCRSAIEI 360 (517)
Q Consensus 330 ~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~~ 360 (517)
+++++.+++ ...||+|.|+++++.+...
T Consensus 216 ~~~l~~i~~---~~~G~~r~a~~~l~~~~~~ 243 (354)
T 1sxj_E 216 KDILKRIAQ---ASNGNLRVSLLMLESMALN 243 (354)
T ss_dssp SHHHHHHHH---HHTTCHHHHHHHHTHHHHT
T ss_pred HHHHHHHHH---HcCCCHHHHHHHHHHHHHh
Confidence 899999887 4689999999999987643
No 59
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.64 E-value=1.2e-15 Score=155.32 Aligned_cols=212 Identities=16% Similarity=0.162 Sum_probs=135.1
Q ss_pred CCCCcHHHHHHHHHHHHHhhc--------------------------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHH
Q 010136 125 TIVCREDEQKKVLEFCKKNLE--------------------------EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAK 178 (517)
Q Consensus 125 ~l~gRe~e~~~l~~~L~~~l~--------------------------~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~ 178 (517)
.++|++...+.|...+..... .....+++|+||||||||++++++++.+.
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~---- 97 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD---- 97 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT----
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhC----
Confidence 478999999888877732111 12356899999999999999999998763
Q ss_pred hcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhh-ccCCCceEEEEEeCcchhccc---
Q 010136 179 EAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKL-HSSVMKMMLIIADELDYLITR--- 254 (517)
Q Consensus 179 ~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~vI~iDEiD~L~~~--- 254 (517)
..++.++|..+....- .+......+...+.... ......+.||||||+|.+...
T Consensus 98 ------~~~~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~ 155 (376)
T 1um8_A 98 ------IPIAISDATSLTEAGY----------------VGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSEN 155 (376)
T ss_dssp ------CCEEEEEGGGCC------------------------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC------
T ss_pred ------CCEEEecchhhhhcCc----------------CCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCC
Confidence 3689999987642110 01111223344433100 000123569999999999876
Q ss_pred -----------CchHHHHHhccCC------------------CCCCcEEEEEEECCCCc---------------------
Q 010136 255 -----------DRAVLHDLFMLTT------------------FPFSRFILIGIANAIDL--------------------- 284 (517)
Q Consensus 255 -----------~~~~L~~l~~~~~------------------~~~~~v~lI~ian~~~~--------------------- 284 (517)
.++.|..+++... ...+++++|+++|..++
T Consensus 156 ~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~ 235 (376)
T 1um8_A 156 RSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMS 235 (376)
T ss_dssp --------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCC
T ss_pred CceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhh
Confidence 4567777776321 11256788887773111
Q ss_pred -----------------chhhcccccccCCCceEEEeCCCCHHHHHHHHHH----HHh----hh----ccCCCChhHHHH
Q 010136 285 -----------------ADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQE----RLM----EL----SYIVFQPQALEL 335 (517)
Q Consensus 285 -----------------~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~----rl~----~~----~~~~~~~~ai~~ 335 (517)
...+.|.+.+| +. ..+.|+|++.+++..|+.. .+. .+ ....++++++++
T Consensus 236 ~~~~~~~~~~~~~~~l~~~~~~p~l~~R-~~-~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 313 (376)
T 1um8_A 236 KKEQEAILHLVQTHDLVTYGLIPELIGR-LP-VLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKE 313 (376)
T ss_dssp TTTTTTSGGGCCHHHHHHTTCCHHHHTT-CC-EEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHH
T ss_pred ccchhHHHhhcCHHHHhhcCCChHHhcC-CC-ceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHH
Confidence 11245677777 54 5899999999999999962 111 11 123589999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 010136 336 CARKVAAASGDMRKALSVCRSAIEILEAE 364 (517)
Q Consensus 336 ia~~~~~~~Gd~R~al~ll~~A~~~a~~~ 364 (517)
+++......|++|.+.+++..++..+..+
T Consensus 314 l~~~~~~~~~~~R~L~~~le~~~~~~~~~ 342 (376)
T 1um8_A 314 IAQLALERKTGARGLRAIIEDFCLDIMFD 342 (376)
T ss_dssp HHHHHHHTTCTGGGHHHHHHHHHHHHHHT
T ss_pred HHHHhcccccCcHHHHHHHHHHHHHHHhh
Confidence 99865444599999999999888765543
No 60
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.62 E-value=1.5e-13 Score=137.85 Aligned_cols=287 Identities=14% Similarity=0.127 Sum_probs=165.6
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCC----
Q 010136 121 TAPSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLT---- 196 (517)
Q Consensus 121 ~~p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~---- 196 (517)
..|+.++||+++++.|..++.. ++.++|+|++|+|||++++.+++.+ .+++++|....
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~------~~~v~i~G~~G~GKT~Ll~~~~~~~------------~~~~~~~~~~~~~~~ 70 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLEN------YPLTLLLGIRRVGKSSLLRAFLNER------------PGILIDCRELYAERG 70 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHH------CSEEEEECCTTSSHHHHHHHHHHHS------------SEEEEEHHHHHHTTT
T ss_pred CChHhcCChHHHHHHHHHHHhc------CCeEEEECCCcCCHHHHHHHHHHHc------------CcEEEEeeccccccc
Confidence 3566899999999999988765 2789999999999999999987653 26888886542
Q ss_pred --CHHHHHHHHHHHhCCC---------------CCCC-CCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcc----c
Q 010136 197 --NTSEIFSKILLKLQPR---------------KKLN-GSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLIT----R 254 (517)
Q Consensus 197 --s~~~i~~~i~~~l~~~---------------~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~----~ 254 (517)
+...++..+...+... .... .... ...+...+.... ...++.+|||||+|++.. .
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~--~~~~~~vlvlDe~~~~~~~~~~~ 147 (350)
T 2qen_A 71 HITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLS-LREVFRELNDLG--EELGEFIVAFDEAQYLRFYGSRG 147 (350)
T ss_dssp CBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCC-HHHHHHHHHHHH--HHHSCEEEEEETGGGGGGBTTTT
T ss_pred CCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccch-HHHHHHHHHHHH--hccCCEEEEEeCHHHHhccCccc
Confidence 5666777777665420 0000 0112 222333332111 111278999999999975 2
Q ss_pred Cch---HHHHHhccCCCCCCcEEEEEEECCCCcchhh------cccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhcc
Q 010136 255 DRA---VLHDLFMLTTFPFSRFILIGIANAIDLADRF------LPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSY 325 (517)
Q Consensus 255 ~~~---~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l------~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~ 325 (517)
... .|..+.+.. .++.+|.++....+...+ ...+..+ . ...+.+.|++.++..+++...+....
T Consensus 148 ~~~~~~~L~~~~~~~----~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~-~-~~~i~l~pl~~~e~~~~l~~~~~~~~- 220 (350)
T 2qen_A 148 GKELLALFAYAYDSL----PNLKIILTGSEVGLLHDFLKITDYESPLYGR-I-AGEVLVKPFDKDTSVEFLKRGFREVN- 220 (350)
T ss_dssp THHHHHHHHHHHHHC----TTEEEEEEESSHHHHHHHHCTTCTTSTTTTC-C-CEEEECCCCCHHHHHHHHHHHHHTTT-
T ss_pred hhhHHHHHHHHHHhc----CCeEEEEECCcHHHHHHHHhhcCCCCccccC-c-cceeeCCCCCHHHHHHHHHHHHHHcC-
Confidence 222 333333322 255566555532211221 1122223 2 35899999999999999987765321
Q ss_pred CCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHH
Q 010136 326 IVFQPQALELCARKVAAASGDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVA 405 (517)
Q Consensus 326 ~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a 405 (517)
..++++.+..+.+ .+.|.+.....++...+. ..... .+..+.+..+
T Consensus 221 ~~~~~~~~~~i~~---~tgG~P~~l~~~~~~~~~---~~~~~----------------------------~~~~~~~~~~ 266 (350)
T 2qen_A 221 LDVPENEIEEAVE---LLDGIPGWLVVFGVEYLR---NGDFG----------------------------RAMKRTLEVA 266 (350)
T ss_dssp CCCCHHHHHHHHH---HHTTCHHHHHHHHHHHHH---HCCHH----------------------------HHHHHHHHHH
T ss_pred CCCCHHHHHHHHH---HhCCCHHHHHHHHHHHhc---cccHh----------------------------HHHHHHHHHH
Confidence 2466776666654 467777654444443221 00000 0111111111
Q ss_pred HHHhccChhHHHhccC---CHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhcCce
Q 010136 406 LSNTFKSPVVDTIKSL---PQHQQILLCSAVKFFRGGKKDMTVGELNKSYMNICKTSLIPPVGTLEFFSMCRVLHDQGVL 482 (517)
Q Consensus 406 ~~~~~~~~~~~~i~~L---~~~~k~iL~al~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~L~~~glI 482 (517)
...+ ...+..+ +..++.+|.+++. + .++..++.+.+.. ..+ .++..++..+++.|++.|||
T Consensus 267 ~~~~-----~~~l~~l~~~~~~~~~~l~~la~----g--~~~~~~l~~~~~~---~~~--~~~~~~~~~~l~~L~~~gli 330 (350)
T 2qen_A 267 KGLI-----MGELEELRRRSPRYVDILRAIAL----G--YNRWSLIRDYLAV---KGT--KIPEPRLYALLENLKKMNWI 330 (350)
T ss_dssp HHHH-----HHHHHHHHHHCHHHHHHHHHHHT----T--CCSHHHHHHHHHH---TTC--CCCHHHHHHHHHHHHHTTSE
T ss_pred HHHH-----HHHHHHHHhCChhHHHHHHHHHh----C--CCCHHHHHHHHHH---HhC--CCCHHHHHHHHHHHHhCCCE
Confidence 1111 1112222 7888888887763 2 2567766553322 221 45778899999999999999
Q ss_pred eec
Q 010136 483 KVG 485 (517)
Q Consensus 483 ~~~ 485 (517)
...
T Consensus 331 ~~~ 333 (350)
T 2qen_A 331 VEE 333 (350)
T ss_dssp EEE
T ss_pred Eec
Confidence 753
No 61
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.61 E-value=4.7e-15 Score=149.30 Aligned_cols=143 Identities=21% Similarity=0.217 Sum_probs=106.2
Q ss_pred eEEEEEeCcchhcccCchHHHHHhccC-----CCC-----CCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCC-C
Q 010136 240 MMLIIADELDYLITRDRAVLHDLFMLT-----TFP-----FSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAY-S 308 (517)
Q Consensus 240 ~~vI~iDEiD~L~~~~~~~L~~l~~~~-----~~~-----~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~-~ 308 (517)
..||||||+|.+....++.|..+++.. ... ..++++|+++|..+ ..+++.+.+| |. ..+.|+++ +
T Consensus 145 ~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~--~~l~~~L~~R-~~-~~~~l~~~~~ 220 (350)
T 1g8p_A 145 RGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEE--GDLRPQLLDR-FG-LSVEVLSPRD 220 (350)
T ss_dssp TEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCS--CCCCHHHHTT-CS-EEEECCCCCS
T ss_pred CCEEEEeChhhCCHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCC--CCCCHHHHhh-cc-eEEEcCCCCc
Confidence 469999999999877777777766531 111 13789999999532 3578899998 63 36899888 5
Q ss_pred HHHHHHHHHHHHh----------------------------hhccCCCChhHHHHHHHHHHHHhC-CHHHHHHHHHHHHH
Q 010136 309 KDQIIRILQERLM----------------------------ELSYIVFQPQALELCARKVAAASG-DMRKALSVCRSAIE 359 (517)
Q Consensus 309 ~~e~~~IL~~rl~----------------------------~~~~~~~~~~ai~~ia~~~~~~~G-d~R~al~ll~~A~~ 359 (517)
.++..+|+..++. ......+++++++++++......+ ++|.++++++.|..
T Consensus 221 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~ 300 (350)
T 1g8p_A 221 VETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARA 300 (350)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Confidence 6666678765321 112247899999999987655555 79999999999998
Q ss_pred HHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccChh
Q 010136 360 ILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSPV 414 (517)
Q Consensus 360 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~~ 414 (517)
+|..+++. .|+.+||.+|+..+.....
T Consensus 301 ~A~~~~~~----------------------------~v~~~~v~~a~~~~l~~r~ 327 (350)
T 1g8p_A 301 LAALEGAT----------------------------AVGRDHLKRVATMALSHRL 327 (350)
T ss_dssp HHHHTTCS----------------------------BCCHHHHHHHHHHHHGGGC
T ss_pred HHHHcCCC----------------------------cCCHHHHHHHHHHHHhhcc
Confidence 88776655 7999999999988776553
No 62
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.61 E-value=1.1e-14 Score=163.40 Aligned_cols=211 Identities=17% Similarity=0.193 Sum_probs=137.5
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHH
Q 010136 123 PSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIF 202 (517)
Q Consensus 123 p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~ 202 (517)
.+.++||++++..+...+.. ...++++|+||||||||++++.+++.+.............++++++..+......
T Consensus 169 ld~viGr~~~i~~l~~~l~~----~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~- 243 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLR----RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKY- 243 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHC----SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC----------
T ss_pred CcccCCcHHHHHHHHHHHhc----CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCcc-
Confidence 35689999999998887643 4567899999999999999999999885421111112357899998665321110
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC--------chHHHHHhccCCCCCCcEE
Q 010136 203 SKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD--------RAVLHDLFMLTTFPFSRFI 274 (517)
Q Consensus 203 ~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~--------~~~L~~l~~~~~~~~~~v~ 274 (517)
.......+..+|.... ....+.||||||+|.+.... .+.|..++. ...+.
T Consensus 244 ---------------~g~~~~~l~~~~~~~~--~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~-----~~~i~ 301 (854)
T 1qvr_A 244 ---------------RGEFEERLKAVIQEVV--QSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA-----RGELR 301 (854)
T ss_dssp -----------------CHHHHHHHHHHHHH--TTCSSEEEEECCC-------------------HHHHH-----TTCCC
T ss_pred ---------------chHHHHHHHHHHHHHH--hcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh-----CCCeE
Confidence 1122455666665321 23457899999999997432 233444442 24677
Q ss_pred EEEEECCCCcc-hhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhh---ccCCCChhHHHHHHHHHHHHhCC---H
Q 010136 275 LIGIANAIDLA-DRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMEL---SYIVFQPQALELCARKVAAASGD---M 347 (517)
Q Consensus 275 lI~ian~~~~~-~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~---~~~~~~~~ai~~ia~~~~~~~Gd---~ 347 (517)
+|+++|..++. ..+++++.+| | ..+.|++++.+++.+||+..+... ....++++++..+++...++..+ +
T Consensus 302 ~I~at~~~~~~~~~~d~aL~rR-f--~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp 378 (854)
T 1qvr_A 302 LIGATTLDEYREIEKDPALERR-F--QPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLP 378 (854)
T ss_dssp EEEEECHHHHHHHTTCTTTCSC-C--CCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTH
T ss_pred EEEecCchHHhhhccCHHHHhC-C--ceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccCh
Confidence 88888843221 1257899998 7 469999999999999998766532 24578999999999988777776 8
Q ss_pred HHHHHHHHHHHHHHHH
Q 010136 348 RKALSVCRSAIEILEA 363 (517)
Q Consensus 348 R~al~ll~~A~~~a~~ 363 (517)
++|+++++.|...+..
T Consensus 379 ~kai~lldea~a~~~~ 394 (854)
T 1qvr_A 379 DKAIDLIDEAAARLRM 394 (854)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999888765543
No 63
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.60 E-value=7.1e-15 Score=156.29 Aligned_cols=208 Identities=16% Similarity=0.201 Sum_probs=128.4
Q ss_pred CCCCcHHHHHHHHHHHHHh-h-ccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHH
Q 010136 125 TIVCREDEQKKVLEFCKKN-L-EEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIF 202 (517)
Q Consensus 125 ~l~gRe~e~~~l~~~L~~~-l-~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~ 202 (517)
+++|.++..+.+..++.-. + ....+.+++|+||||||||++++.++..+. ..+..++|........++
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~----------~~~~~i~~~~~~~~~~~~ 151 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLG----------RKFVRISLGGVRDESEIR 151 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHT----------CEEEEECCCC--------
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcC----------CCeEEEEecccchhhhhh
Confidence 4789888888887664321 1 223466899999999999999999998874 468899998765433322
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCc----hHHHHHhccCCC----------
Q 010136 203 SKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDR----AVLHDLFMLTTF---------- 268 (517)
Q Consensus 203 ~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~----~~L~~l~~~~~~---------- 268 (517)
......+ +.. ...+...|.. .....+ ||||||+|.+....+ ..|..+++..+.
T Consensus 152 g~~~~~i--------g~~-~~~~~~~~~~---a~~~~~-vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~ 218 (543)
T 3m6a_A 152 GHRRTYV--------GAM-PGRIIQGMKK---AGKLNP-VFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEE 218 (543)
T ss_dssp ---------------------CHHHHHHT---TCSSSE-EEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCC
T ss_pred hHHHHHh--------ccC-chHHHHHHHH---hhccCC-EEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCe
Confidence 2111111 111 2234445542 122333 999999999987633 445555542111
Q ss_pred --CCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHh-------hhc--cCCCChhHHHHHH
Q 010136 269 --PFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLM-------ELS--YIVFQPQALELCA 337 (517)
Q Consensus 269 --~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~-------~~~--~~~~~~~ai~~ia 337 (517)
...++++|+++|. .+.+++.+.+| | ..|.|++|+.++...|+...+. ++. ...++++++..++
T Consensus 219 ~~~~~~v~iI~ttN~---~~~l~~aL~~R-~--~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~ 292 (543)
T 3m6a_A 219 TFDLSKVLFIATANN---LATIPGPLRDR-M--EIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDII 292 (543)
T ss_dssp CCBCSSCEEEEECSS---TTTSCHHHHHH-E--EEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHH
T ss_pred eecccceEEEeccCc---cccCCHHHHhh-c--ceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHH
Confidence 1157899999995 56788999998 7 6899999999999999987652 111 2357899999887
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHH
Q 010136 338 RKVAAASGDMRKALSVCRSAIEILE 362 (517)
Q Consensus 338 ~~~~~~~Gd~R~al~ll~~A~~~a~ 362 (517)
+.+. ..|++|..-+.+..++..+.
T Consensus 293 ~~~~-~~~~vR~L~~~i~~~~~~aa 316 (543)
T 3m6a_A 293 RYYT-REAGVRSLERQLAAICRKAA 316 (543)
T ss_dssp HHHC-CCSSSHHHHHHHHHHHHHHH
T ss_pred HhCC-hhhchhHHHHHHHHHHHHHH
Confidence 7432 23677776666655554443
No 64
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.60 E-value=6.3e-15 Score=154.11 Aligned_cols=200 Identities=15% Similarity=0.153 Sum_probs=132.6
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFS 203 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~ 203 (517)
+.++||+++++.+...+.. ...++++|+||||||||++++.++..+.............+++++|. +.+.
T Consensus 180 d~iiGr~~~i~~l~~~l~r----~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~~~--- 249 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSR----RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYR--- 249 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHC----SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred CCccCcHHHHHHHHHHHhc----cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---cccc---
Confidence 4699999999998888654 45679999999999999999999998753110001113467888876 1100
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCCC
Q 010136 204 KILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAID 283 (517)
Q Consensus 204 ~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~ 283 (517)
|.. ...+..+|... ....+.||||| ...+....|... .....+.+|+++|..+
T Consensus 250 --------------g~~-e~~~~~~~~~~---~~~~~~iLfiD-------~~~~a~~~L~~~--L~~g~v~vI~at~~~e 302 (468)
T 3pxg_A 250 --------------GEF-EDRLKKVMDEI---RQAGNIILFID-------AAIDASNILKPS--LARGELQCIGATTLDE 302 (468)
T ss_dssp ------------------CTTHHHHHHHH---HTCCCCEEEEC-------C--------CCC--TTSSSCEEEEECCTTT
T ss_pred --------------chH-HHHHHHHHHHH---HhcCCeEEEEe-------CchhHHHHHHHh--hcCCCEEEEecCCHHH
Confidence 100 12234444421 12456899999 122222222222 2345789999888655
Q ss_pred cch--hhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhh---ccCCCChhHHHHHHHHHHHHhCC---HHHHHHHHH
Q 010136 284 LAD--RFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMEL---SYIVFQPQALELCARKVAAASGD---MRKALSVCR 355 (517)
Q Consensus 284 ~~~--~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~---~~~~~~~~ai~~ia~~~~~~~Gd---~R~al~ll~ 355 (517)
+.. .+++.+.+| | ..|.|++++.+++..||+..+..+ ....+++++++.+++....+.++ +++|+++++
T Consensus 303 ~~~~~~~~~al~~R-f--~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~ 379 (468)
T 3pxg_A 303 YRKYIEKDAALERR-F--QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLID 379 (468)
T ss_dssp THHHHTTCSHHHHS-E--EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHH
T ss_pred HHHHhhcCHHHHHh-C--ccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHH
Confidence 322 467899998 7 579999999999999999766532 34578999999999988777766 789999999
Q ss_pred HHHHHHHH
Q 010136 356 SAIEILEA 363 (517)
Q Consensus 356 ~A~~~a~~ 363 (517)
.|...+..
T Consensus 380 ~a~~~~~~ 387 (468)
T 3pxg_A 380 EAGSKVRL 387 (468)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 98865544
No 65
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.60 E-value=1.2e-15 Score=139.33 Aligned_cols=164 Identities=15% Similarity=0.231 Sum_probs=105.7
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHH
Q 010136 123 PSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIF 202 (517)
Q Consensus 123 p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~ 202 (517)
.+.++||+++++.+...+.. ..+.+++|+||||||||++++.+++.+.............+++++|.........
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 95 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQR----RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKY- 95 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTS----SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCS-
T ss_pred ccccccchHHHHHHHHHHhc----CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCc-
Confidence 45789999999888887544 4567899999999999999999999876421110011246788887432100000
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC--------chHHHHHhccCCCCCCcEE
Q 010136 203 SKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD--------RAVLHDLFMLTTFPFSRFI 274 (517)
Q Consensus 203 ~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~--------~~~L~~l~~~~~~~~~~v~ 274 (517)
.......+..++.... ....+.||||||+|.+.... ++.|..+++. .++.
T Consensus 96 ---------------~~~~~~~~~~~~~~~~--~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~-----~~~~ 153 (195)
T 1jbk_A 96 ---------------RGEFEERLKGVLNDLA--KQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR-----GELH 153 (195)
T ss_dssp ---------------HHHHHHHHHHHHHHHH--HSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT-----TSCC
T ss_pred ---------------cccHHHHHHHHHHHHh--hcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc-----CCeE
Confidence 0001223344443211 24456899999999996332 4555555532 4667
Q ss_pred EEEEECCCCcch--hhcccccccCCCceEEEeCCCCHHHHHHHH
Q 010136 275 LIGIANAIDLAD--RFLPRLQSMNCKPLVVTFRAYSKDQIIRIL 316 (517)
Q Consensus 275 lI~ian~~~~~~--~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL 316 (517)
+|+++|..++.. .+++++.+| | ..+.|.+++.+++.+||
T Consensus 154 ~i~~~~~~~~~~~~~~~~~l~~r-~--~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 154 CVGATTLDEYRQYIEKDAALERR-F--QKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEEEECHHHHHHHTTTCHHHHTT-E--EEEECCCCCHHHHHTTC
T ss_pred EEEeCCHHHHHHHHhcCHHHHHH-h--ceeecCCCCHHHHHHHh
Confidence 888888533221 457889888 7 47999999999998775
No 66
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.59 E-value=1.7e-14 Score=160.21 Aligned_cols=238 Identities=13% Similarity=0.140 Sum_probs=154.6
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHH
Q 010136 123 PSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIF 202 (517)
Q Consensus 123 p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~ 202 (517)
.+.++||+++++.+...|.. ....+++|+||||||||++++.++..+.............++.+++..+..
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~----~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~----- 255 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCR----RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA----- 255 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTS----SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---C-----
T ss_pred CCCccCCHHHHHHHHHHHhc----cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhc-----
Confidence 35689999999988877653 467899999999999999999999987542100001123566666554321
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC-----chHHHHHhccCCCCCCcEEEEE
Q 010136 203 SKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD-----RAVLHDLFMLTTFPFSRFILIG 277 (517)
Q Consensus 203 ~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~-----~~~L~~l~~~~~~~~~~v~lI~ 277 (517)
+. .. .....+.+..+|... ....+.||||||+|.+.... ...+.+++... .....+.+|+
T Consensus 256 --------~~--~~-~g~~e~~l~~~~~~~---~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~-l~~~~~~~I~ 320 (758)
T 1r6b_X 256 --------GT--KY-RGDFEKRFKALLKQL---EQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPL-LSSGKIRVIG 320 (758)
T ss_dssp --------CC--CC-SSCHHHHHHHHHHHH---SSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSC-SSSCCCEEEE
T ss_pred --------cc--cc-cchHHHHHHHHHHHH---HhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHH-HhCCCeEEEE
Confidence 00 01 123355667666532 23356899999999996432 22223333221 2345788999
Q ss_pred EECCCCcch--hhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhh---ccCCCChhHHHHHHHHHHHHhCC---HHH
Q 010136 278 IANAIDLAD--RFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMEL---SYIVFQPQALELCARKVAAASGD---MRK 349 (517)
Q Consensus 278 ian~~~~~~--~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~---~~~~~~~~ai~~ia~~~~~~~Gd---~R~ 349 (517)
++|..++.. .+++++.+| | ..+.|++++.+++.+||...+..+ ....+++++++.++.....+-++ +.+
T Consensus 321 at~~~~~~~~~~~d~aL~~R-f--~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~ 397 (758)
T 1r6b_X 321 STTYQEFSNIFEKDRALARR-F--QKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDK 397 (758)
T ss_dssp EECHHHHHCCCCCTTSSGGG-E--EEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHH
T ss_pred EeCchHHhhhhhcCHHHHhC-c--eEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchH
Confidence 888533211 246888888 7 589999999999999999776532 34568899999998877665554 568
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhcc
Q 010136 350 ALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFK 411 (517)
Q Consensus 350 al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~ 411 (517)
++++++.|...+...... . ....|+.++|.+++.....
T Consensus 398 ~i~lld~a~~~~~~~~~~---~---------------------~~~~v~~~di~~~~~~~~~ 435 (758)
T 1r6b_X 398 AIDVIDEAGARARLMPVS---K---------------------RKKTVNVADIESVVARIAR 435 (758)
T ss_dssp HHHHHHHHHHHHHHSSSC---C---------------------CCCSCCHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhccccc---c---------------------cCCccCHHHHHHHHHHhcC
Confidence 999999887554331000 0 0016888999988887654
No 67
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.59 E-value=1.6e-15 Score=146.76 Aligned_cols=215 Identities=16% Similarity=0.141 Sum_probs=136.1
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHH
Q 010136 122 APSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEI 201 (517)
Q Consensus 122 ~p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i 201 (517)
.++.++|++..+..+...+..... ...+++|+|+||||||++++++++.+... ...++++||..+.. ..+
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~~--~~~~vll~G~~GtGKt~la~~i~~~~~~~-------~~~~~~v~~~~~~~-~~~ 73 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLAP--LDKPVLIIGERGTGKELIASRLHYLSSRW-------QGPFISLNCAALNE-NLL 73 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHTT--SCSCEEEECCTTSCHHHHHHHHHHTSTTT-------TSCEEEEEGGGSCH-HHH
T ss_pred ccccceeCCHHHHHHHHHHHHHhC--CCCCEEEECCCCCcHHHHHHHHHHhcCcc-------CCCeEEEecCCCCh-hHH
Confidence 456789999999999988887654 45789999999999999999998765321 13689999998742 222
Q ss_pred HHHHHHHhCCCCCC-CCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCC--------CCCCc
Q 010136 202 FSKILLKLQPRKKL-NGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTT--------FPFSR 272 (517)
Q Consensus 202 ~~~i~~~l~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~--------~~~~~ 272 (517)
...++ +.... ..+.. ......+. .....+|||||+|.+....|..|..+++... .....
T Consensus 74 ~~~l~----g~~~~~~~g~~--~~~~~~l~------~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~ 141 (265)
T 2bjv_A 74 DSELF----GHEAGAFTGAQ--KRHPGRFE------RADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVN 141 (265)
T ss_dssp HHHHH----CCC-----------CCCCHHH------HTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECC
T ss_pred HHHhc----CCccccccccc--ccccchhh------hcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCC
Confidence 22221 11110 00000 00011222 0123589999999998777777777776421 11246
Q ss_pred EEEEEEECCC--Cc--chhhcccccccCCCceEEEeCCCCH--HHHHHHHHHHHhh----hcc---CCCChhHHHHHHHH
Q 010136 273 FILIGIANAI--DL--ADRFLPRLQSMNCKPLVVTFRAYSK--DQIIRILQERLME----LSY---IVFQPQALELCARK 339 (517)
Q Consensus 273 v~lI~ian~~--~~--~~~l~~~l~sr~~~~~~i~f~p~~~--~e~~~IL~~rl~~----~~~---~~~~~~ai~~ia~~ 339 (517)
+.+|+++|.. ++ ...+.+.+.+| +....|.++|+.. +++..++...+.. ... ..+++++++.+...
T Consensus 142 ~~iI~atn~~~~~~~~~~~~~~~L~~R-l~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~ 220 (265)
T 2bjv_A 142 VRLVCATNADLPAMVNEGTFRADLLDA-LAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNY 220 (265)
T ss_dssp CEEEEEESSCHHHHHHHTSSCHHHHHH-HCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHS
T ss_pred eEEEEecCcCHHHHHHcCCccHHHHHh-hcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhC
Confidence 7888888852 11 11355777788 6556899999976 7787777665542 111 26899999988652
Q ss_pred HHHHhCCHHHHHHHHHHHHHHH
Q 010136 340 VAAASGDMRKALSVCRSAIEIL 361 (517)
Q Consensus 340 ~~~~~Gd~R~al~ll~~A~~~a 361 (517)
...|++|...++++.++..+
T Consensus 221 --~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 221 --RWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp --CCTTHHHHHHHHHHHHHHHH
T ss_pred --CCCCCHHHHHHHHHHHHHhC
Confidence 35799999999999887554
No 68
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.58 E-value=4.9e-13 Score=134.42 Aligned_cols=288 Identities=13% Similarity=0.081 Sum_probs=163.4
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCC-----
Q 010136 121 TAPSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSL----- 195 (517)
Q Consensus 121 ~~p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~----- 195 (517)
..|+.++||+++++.|.. +.. +.++|+|++|+|||++++.+++.+. ..+++++|...
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~-------~~v~i~G~~G~GKT~L~~~~~~~~~----------~~~~~~~~~~~~~~~~ 71 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA-------PITLVLGLRRTGKSSIIKIGINELN----------LPYIYLDLRKFEERNY 71 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS-------SEEEEEESTTSSHHHHHHHHHHHHT----------CCEEEEEGGGGTTCSC
T ss_pred CCHHHhcChHHHHHHHHH-hcC-------CcEEEECCCCCCHHHHHHHHHHhcC----------CCEEEEEchhhccccC
Confidence 456789999999988877 543 6999999999999999999987753 14688888753
Q ss_pred CCHHHHHHHHHHHhCC-------------CC-----CC---C--C---CCCHHHHHHHHHHhhhccCCCceEEEEEeCcc
Q 010136 196 TNTSEIFSKILLKLQP-------------RK-----KL---N--G---STSPLQYLQNLYSQKLHSSVMKMMLIIADELD 249 (517)
Q Consensus 196 ~s~~~i~~~i~~~l~~-------------~~-----~~---~--~---~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD 249 (517)
.+...++..+...+.. .. .. . . .......+...+.. . .. ++.+|||||+|
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~-~~-~~~vlvlDe~~ 147 (357)
T 2fna_A 72 ISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQ--A-SK-DNVIIVLDEAQ 147 (357)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHH--T-CS-SCEEEEEETGG
T ss_pred CCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHh--c-CC-CCeEEEEECHH
Confidence 4556666666554411 00 00 0 0 01113333333331 1 11 38999999999
Q ss_pred hhccc-C---chHHHHHhccCCCCCCcEEEEEEECCCCcchhh------cccccccCCCceEEEeCCCCHHHHHHHHHHH
Q 010136 250 YLITR-D---RAVLHDLFMLTTFPFSRFILIGIANAIDLADRF------LPRLQSMNCKPLVVTFRAYSKDQIIRILQER 319 (517)
Q Consensus 250 ~L~~~-~---~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l------~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~r 319 (517)
++... . ...|..+.+.. .++.+|.+++.......+ ...+..+ ....+.+.|++.++..+++...
T Consensus 148 ~~~~~~~~~~~~~l~~~~~~~----~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r--~~~~i~l~~l~~~e~~~~l~~~ 221 (357)
T 2fna_A 148 ELVKLRGVNLLPALAYAYDNL----KRIKFIMSGSEMGLLYDYLRVEDPESPLFGR--AFSTVELKPFSREEAIEFLRRG 221 (357)
T ss_dssp GGGGCTTCCCHHHHHHHHHHC----TTEEEEEEESSHHHHHHHTTTTCTTSTTTTC--CCEEEEECCCCHHHHHHHHHHH
T ss_pred HhhccCchhHHHHHHHHHHcC----CCeEEEEEcCchHHHHHHHhccCCCCccccC--ccceeecCCCCHHHHHHHHHHH
Confidence 99752 1 23455554432 256666666642211211 1112222 1368999999999999999987
Q ss_pred HhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccH
Q 010136 320 LMELSYIVFQPQALELCARKVAAASGDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRV 399 (517)
Q Consensus 320 l~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~ 399 (517)
+.... ...++ . ..+ +....|.+.....++..++. ..... ....
T Consensus 222 ~~~~~-~~~~~-~-~~i---~~~t~G~P~~l~~~~~~~~~---~~~~~----------------------------~~~~ 264 (357)
T 2fna_A 222 FQEAD-IDFKD-Y-EVV---YEKIGGIPGWLTYFGFIYLD---NKNLD----------------------------FAIN 264 (357)
T ss_dssp HHHHT-CCCCC-H-HHH---HHHHCSCHHHHHHHHHHHHH---HCCHH----------------------------HHHH
T ss_pred HHHcC-CCCCc-H-HHH---HHHhCCCHHHHHHHHHHHcc---ccchH----------------------------HHHH
Confidence 75321 12222 2 333 33567777655445444321 00000 0101
Q ss_pred HHHHHHHHHhccChhHHHh---ccCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH
Q 010136 400 DHMAVALSNTFKSPVVDTI---KSLPQHQQILLCSAVKFFRGGKKDMTVGELNKSYMNICKTSLIPPVGTLEFFSMCRVL 476 (517)
Q Consensus 400 ~~v~~a~~~~~~~~~~~~i---~~L~~~~k~iL~al~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~L 476 (517)
+.+..+.. .....+...+ ..++..++.+|.+++. + . +..++.+.|...+. .+++..++..+++.|
T Consensus 265 ~~~~~~~~-~~~~~l~~~~~~~~~l~~~~~~~l~~la~----g--~-~~~~l~~~~~~~~g----~~~~~~~~~~~L~~L 332 (357)
T 2fna_A 265 QTLEYAKK-LILKEFENFLHGREIARKRYLNIMRTLSK----C--G-KWSDVKRALELEEG----IEISDSEIYNYLTQL 332 (357)
T ss_dssp HHHHHHHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHTT----C--B-CHHHHHHHHHHHHC----SCCCHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHhhccccccHHHHHHHHHHHc----C--C-CHHHHHHHHHHhcC----CCCCHHHHHHHHHHH
Confidence 11111110 0001111111 1688899999987763 2 2 67777654443332 136778899999999
Q ss_pred hhcCceeec
Q 010136 477 HDQGVLKVG 485 (517)
Q Consensus 477 ~~~glI~~~ 485 (517)
++.|||...
T Consensus 333 ~~~gli~~~ 341 (357)
T 2fna_A 333 TKHSWIIKE 341 (357)
T ss_dssp HHTTSEEES
T ss_pred HhCCCEEec
Confidence 999999753
No 69
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.57 E-value=2.3e-15 Score=148.48 Aligned_cols=213 Identities=16% Similarity=0.191 Sum_probs=141.5
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFS 203 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~ 203 (517)
+.++|++..+..+...+..... ...+++|+|+||||||++++++...... . ...++++||..+.. .+
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~--~~~~vLi~Ge~GtGKt~lAr~i~~~~~~----~---~~~~v~v~~~~~~~--~l-- 68 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP--SDATVLIHGDSGTGKELVARALHACSAR----S---DRPLVTLNCAALNE--SL-- 68 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS--TTSCEEEESCTTSCHHHHHHHHHHHSSC----S---SSCCCEEECSSCCH--HH--
T ss_pred CCcEECCHHHHHHHHHHHHHhC--CCCcEEEECCCCchHHHHHHHHHHhCcc----c---CCCeEEEeCCCCCh--HH--
Confidence 3589999999999999888653 5678999999999999999999875421 1 13589999998743 22
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCC--------CCCcEEE
Q 010136 204 KILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF--------PFSRFIL 275 (517)
Q Consensus 204 ~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~--------~~~~v~l 275 (517)
+...+.+......... .......|.. . ...+|||||||.+....|..|..+++.... ....+.+
T Consensus 69 -~~~~lfg~~~g~~tg~-~~~~~g~~~~----a--~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~ri 140 (304)
T 1ojl_A 69 -LESELFGHEKGAFTGA-DKRREGRFVE----A--DGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRL 140 (304)
T ss_dssp -HHHHHTCCCSSCCC----CCCCCHHHH----H--TTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEE
T ss_pred -HHHHhcCccccccCch-hhhhcCHHHh----c--CCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEE
Confidence 2233433322111110 0001112221 0 124799999999987777777777654321 1346889
Q ss_pred EEEECCCCcch-----hhcccccccCCCceEEEeCCCC--HHHHHHHHHHHHhhh------ccCCCChhHHHHHHHHHHH
Q 010136 276 IGIANAIDLAD-----RFLPRLQSMNCKPLVVTFRAYS--KDQIIRILQERLMEL------SYIVFQPQALELCARKVAA 342 (517)
Q Consensus 276 I~ian~~~~~~-----~l~~~l~sr~~~~~~i~f~p~~--~~e~~~IL~~rl~~~------~~~~~~~~ai~~ia~~~~~ 342 (517)
|+++|.. +.+ .+.+.+.+| +....|.++|+. .+++..++...+..+ ....+++++++.+... .
T Consensus 141 I~atn~~-l~~~v~~g~fr~~L~~R-l~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~--~ 216 (304)
T 1ojl_A 141 IAATHRD-LAEEVSAGRFRQDLYYR-LNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHY--D 216 (304)
T ss_dssp EEEESSC-HHHHHHHTSSCHHHHHH-HSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHC--C
T ss_pred EEecCcc-HHHHHHhCCcHHHHHhh-cCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcC--C
Confidence 9988853 111 245667777 556689999998 678888877665422 2246899999998763 2
Q ss_pred HhCCHHHHHHHHHHHHHHH
Q 010136 343 ASGDMRKALSVCRSAIEIL 361 (517)
Q Consensus 343 ~~Gd~R~al~ll~~A~~~a 361 (517)
..|++|...+++++|+.++
T Consensus 217 wpGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 217 WPGNIRELENAIERAVVLL 235 (304)
T ss_dssp CSSHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHhC
Confidence 4799999999999988654
No 70
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.56 E-value=7.9e-15 Score=162.89 Aligned_cols=216 Identities=15% Similarity=0.142 Sum_probs=147.3
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccC-----CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEE-----KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNT 198 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~-----~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~ 198 (517)
..++|++..++.+...+.....+. ..++++|+||||||||++++++++.+. ..+++++|..+...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~----------~~~~~i~~s~~~~~ 527 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG----------IELLRFDMSEYMER 527 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT----------CEEEEEEGGGCSSS
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc----------CCEEEEechhhcch
Confidence 357999999999998887654322 234799999999999999999998873 36899999887543
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCC--------CC
Q 010136 199 SEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF--------PF 270 (517)
Q Consensus 199 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~--------~~ 270 (517)
..+ ..+.+......+......+...+. ...+.||||||||.+....++.|..+++.... .-
T Consensus 528 ~~~-----~~l~g~~~g~~g~~~~~~l~~~~~------~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~ 596 (758)
T 1r6b_X 528 HTV-----SRLIGAPPGYVGFDQGGLLTDAVI------KHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADF 596 (758)
T ss_dssp SCC-----SSSCCCCSCSHHHHHTTHHHHHHH------HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEEC
T ss_pred hhH-----hhhcCCCCCCcCccccchHHHHHH------hCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEec
Confidence 210 111111111111000112334443 23468999999999987777888888874211 11
Q ss_pred CcEEEEEEECCCC----------------------cchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhc----
Q 010136 271 SRFILIGIANAID----------------------LADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELS---- 324 (517)
Q Consensus 271 ~~v~lI~ian~~~----------------------~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~---- 324 (517)
.+++||+++|... +...+.|.+.+| +. ..|.|+|++.+++..|+...+..+.
T Consensus 597 ~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R-~~-~~i~~~~l~~~~~~~i~~~~l~~~~~~~~ 674 (758)
T 1r6b_X 597 RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNR-LD-NIIWFDHLSTDVIHQVVDKFIVELQVQLD 674 (758)
T ss_dssp TTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTT-CS-EEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhh-CC-cceeeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999521 112567888898 64 4799999999999999998876321
Q ss_pred ----cCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 010136 325 ----YIVFQPQALELCARKVAAASGDMRKALSVCRSAIEILE 362 (517)
Q Consensus 325 ----~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~~a~ 362 (517)
...+++++++++++......+++|...++++.++..+.
T Consensus 675 ~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l 716 (758)
T 1r6b_X 675 QKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPL 716 (758)
T ss_dssp HTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHH
T ss_pred HCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHH
Confidence 13689999999988543335568888888888876433
No 71
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.55 E-value=1.2e-14 Score=142.74 Aligned_cols=161 Identities=15% Similarity=0.118 Sum_probs=96.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQN 227 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~ 227 (517)
.+.+++|+||||||||+++++++++++ ..+++++|..+.+.+. ......+..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~----------~~~i~v~~~~l~~~~~------------------g~~~~~i~~ 86 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMG----------INPIMMSAGELESGNA------------------GEPAKLIRQ 86 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHT----------CCCEEEEHHHHHCC---------------------HHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC----------CCEEEEeHHHhhhccC------------------chhHHHHHH
Confidence 356899999999999999999999884 4689999865422211 112444555
Q ss_pred HHHhhh-ccCCCceEEEEEeCcchhcccCc-------------hHHHHHhccC----------CCCCCcEEEEEEECCCC
Q 010136 228 LYSQKL-HSSVMKMMLIIADELDYLITRDR-------------AVLHDLFMLT----------TFPFSRFILIGIANAID 283 (517)
Q Consensus 228 ~~~~~~-~~~~~~~~vI~iDEiD~L~~~~~-------------~~L~~l~~~~----------~~~~~~v~lI~ian~~~ 283 (517)
.|.... ......+.||||||||.+..+.. ..|.++++-. .....++.||++||.
T Consensus 87 ~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~-- 164 (293)
T 3t15_A 87 RYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGND-- 164 (293)
T ss_dssp HHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSS--
T ss_pred HHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCC--
Confidence 665310 11255789999999999876322 4455555421 123467999999995
Q ss_pred cchhhccccccc-CCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhC-CHH
Q 010136 284 LADRFLPRLQSM-NCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASG-DMR 348 (517)
Q Consensus 284 ~~~~l~~~l~sr-~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~G-d~R 348 (517)
++.+++.+.++ +| ..+.+.| +.++..+|++..+.. ..++.+. +++.+...+| ++.
T Consensus 165 -~~~ld~al~R~~R~--d~~i~~P-~~~~r~~Il~~~~~~---~~~~~~~---l~~~~~~~~~~~l~ 221 (293)
T 3t15_A 165 -FSTLYAPLIRDGRM--EKFYWAP-TREDRIGVCTGIFRT---DNVPAED---VVKIVDNFPGQSID 221 (293)
T ss_dssp -CCC--CHHHHHHHE--EEEEECC-CHHHHHHHHHHHHGG---GCCCHHH---HHHHHHHSCSCCHH
T ss_pred -cccCCHHHhCCCCC--ceeEeCc-CHHHHHHHHHHhccC---CCCCHHH---HHHHhCCCCcccHH
Confidence 55677777753 14 3433444 999999999976653 2445444 3444445555 443
No 72
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.55 E-value=1.2e-14 Score=147.16 Aligned_cols=211 Identities=19% Similarity=0.240 Sum_probs=137.3
Q ss_pred CCCCcHHHHHHHHHHHHHhhcc-----------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCC
Q 010136 125 TIVCREDEQKKVLEFCKKNLEE-----------EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCT 193 (517)
Q Consensus 125 ~l~gRe~e~~~l~~~L~~~l~~-----------~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~ 193 (517)
.++|.+..++.+...+...... ..+.+++|+||||||||++++++++.+. ..++.++|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~----------~~~~~~~~~ 85 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD----------VPFTMADAT 85 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT----------CCEEEEEHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC----------CCEEEechH
Confidence 3799999999988887533211 1456899999999999999999998863 468999997
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhh-ccCCCceEEEEEeCcchhccc--------------CchH
Q 010136 194 SLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKL-HSSVMKMMLIIADELDYLITR--------------DRAV 258 (517)
Q Consensus 194 ~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~vI~iDEiD~L~~~--------------~~~~ 258 (517)
.+....-+ |......+...+.... .-....+.||||||+|.+... -+..
T Consensus 86 ~l~~~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~ 149 (363)
T 3hws_A 86 TLTEAGYV----------------GEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQA 149 (363)
T ss_dssp HHTTCHHH----------------HHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHH
T ss_pred Hhcccccc----------------cccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHH
Confidence 65322110 0001223344443110 001124579999999999865 3566
Q ss_pred HHHHhccC------------------CCCCCcEEEEEEECCCCcc-----------------------------------
Q 010136 259 LHDLFMLT------------------TFPFSRFILIGIANAIDLA----------------------------------- 285 (517)
Q Consensus 259 L~~l~~~~------------------~~~~~~v~lI~ian~~~~~----------------------------------- 285 (517)
|..+++-. .....++.+|+++|..++.
T Consensus 150 Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v 229 (363)
T 3hws_A 150 LLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQV 229 (363)
T ss_dssp HHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTC
T ss_pred HHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhC
Confidence 77777611 1133566777777642111
Q ss_pred --hh-----hcccccccCCCceEEEeCCCCHHHHHHHHHH----HHhh----h----ccCCCChhHHHHHHHHHHHHhCC
Q 010136 286 --DR-----FLPRLQSMNCKPLVVTFRAYSKDQIIRILQE----RLME----L----SYIVFQPQALELCARKVAAASGD 346 (517)
Q Consensus 286 --~~-----l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~----rl~~----~----~~~~~~~~ai~~ia~~~~~~~Gd 346 (517)
+. +.|.+.+| + ...+.|.|++.+++.+|+.. .+.. + ....+++++++.+++......++
T Consensus 230 ~~~~l~~~~~~~~l~~R-~-~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~g 307 (363)
T 3hws_A 230 EPEDLIKFGLIPEFIGR-L-PVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTG 307 (363)
T ss_dssp CHHHHHHHTCCHHHHTT-C-CEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCT
T ss_pred CHHHHHHcCCCHHHhcc-c-CeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccC
Confidence 01 56777888 5 35778999999999999875 2211 1 11357999999999865556677
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010136 347 MRKALSVCRSAIEILEA 363 (517)
Q Consensus 347 ~R~al~ll~~A~~~a~~ 363 (517)
+|..-+++.+++.-+..
T Consensus 308 aR~L~~~ie~~~~~~l~ 324 (363)
T 3hws_A 308 ARGLRSIVEAALLDTMY 324 (363)
T ss_dssp TTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH
Confidence 88888888887765544
No 73
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.51 E-value=2.9e-14 Score=158.13 Aligned_cols=208 Identities=15% Similarity=0.138 Sum_probs=145.5
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCC-----CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEK-----AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNT 198 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~-----~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~ 198 (517)
..++|++..++.+...+.....+.. .++++|+||||||||++++++++.+... + ..++++||..+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~----~---~~~i~i~~s~~~~~ 563 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD----E---ESMIRIDMSEYMEK 563 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC----T---TCEEEEEGGGGCSS
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC----C---cceEEEechhcccc
Confidence 4689999999999999887654321 2279999999999999999999987421 1 36999999886543
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCC--------CC
Q 010136 199 SEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF--------PF 270 (517)
Q Consensus 199 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~--------~~ 270 (517)
... + ...+...+. ...+.||||||||.+....++.|..+++.... ..
T Consensus 564 ~~~------------------~-~~~l~~~~~------~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~ 618 (758)
T 3pxi_A 564 HST------------------S-GGQLTEKVR------RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDF 618 (758)
T ss_dssp CCC------------------C----CHHHHH------HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBC
T ss_pred ccc------------------c-cchhhHHHH------hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEecc
Confidence 221 0 111222332 22346999999999987777888888876321 23
Q ss_pred CcEEEEEEECCCC---------cchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhh--------ccCCCChhHH
Q 010136 271 SRFILIGIANAID---------LADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMEL--------SYIVFQPQAL 333 (517)
Q Consensus 271 ~~v~lI~ian~~~---------~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~--------~~~~~~~~ai 333 (517)
.++.+|+++|... ....+.|.+.+| +. ..|.|+|++.+++..|+...+..+ ....++++++
T Consensus 619 ~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~R-l~-~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~ 696 (758)
T 3pxi_A 619 RNTILIMTSNVGASEKDKVMGELKRAFRPEFINR-ID-EIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAK 696 (758)
T ss_dssp TTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTT-SS-EEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHH
T ss_pred CCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhh-CC-eEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHH
Confidence 5778999999421 122367888888 63 599999999999999999877532 1236899999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Q 010136 334 ELCARKVAAASGDMRKALSVCRSAIEILEAEM 365 (517)
Q Consensus 334 ~~ia~~~~~~~Gd~R~al~ll~~A~~~a~~~~ 365 (517)
+++++......|++|..-+++++++..+..+.
T Consensus 697 ~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~~ 728 (758)
T 3pxi_A 697 AKVAEEGVDLEYGARPLRRAIQKHVEDRLSEE 728 (758)
T ss_dssp HHHHGGGCCTTTTTTTHHHHHHHHTHHHHHHH
T ss_pred HHHHHhCCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 99987544456788887788877776554443
No 74
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.50 E-value=4.2e-14 Score=158.63 Aligned_cols=223 Identities=17% Similarity=0.171 Sum_probs=148.6
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccC-----CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEE-----KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNT 198 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~-----~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~ 198 (517)
..++|++..++.+...+.....+. ..++++|+||||||||+++++++..+.... ..++++||..+...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~-------~~~i~i~~~~~~~~ 630 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE-------EAMIRIDMTEYMEK 630 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSG-------GGEEEECTTTCCSS
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC-------CcEEEEechhccch
Confidence 468999999999999988765431 124899999999999999999999875311 36899999987654
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCC--------CC
Q 010136 199 SEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF--------PF 270 (517)
Q Consensus 199 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~--------~~ 270 (517)
... ..+.+......|......+...+. .....||||||||.+....++.|..+++.... ..
T Consensus 631 ~~~-----s~l~g~~~~~~G~~~~g~l~~~~~------~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~ 699 (854)
T 1qvr_A 631 HAV-----SRLIGAPPGYVGYEEGGQLTEAVR------RRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDF 699 (854)
T ss_dssp GGG-----GGC--------------CHHHHHH------HCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEEC
T ss_pred hHH-----HHHcCCCCCCcCccccchHHHHHH------hCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEecc
Confidence 221 111111111112111122333343 22357999999999977777888888875321 11
Q ss_pred CcEEEEEEECCC-----C----------c--------chhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhc---
Q 010136 271 SRFILIGIANAI-----D----------L--------ADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELS--- 324 (517)
Q Consensus 271 ~~v~lI~ian~~-----~----------~--------~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~--- 324 (517)
.+++||+++|.- + + ...+.|.+.+| +. ..+.|.|++.+++..|+...+..+.
T Consensus 700 ~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~R-l~-~~i~~~pl~~edi~~i~~~~l~~~~~~~ 777 (854)
T 1qvr_A 700 RNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNR-LD-EIVVFRPLTKEQIRQIVEIQLSYLRARL 777 (854)
T ss_dssp TTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHT-CS-BCCBCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHh-cC-eEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 367899988851 0 1 12345667777 53 4789999999999999998775321
Q ss_pred -----cCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Q 010136 325 -----YIVFQPQALELCARKVAAASGDMRKALSVCRSAIEILEAEMR 366 (517)
Q Consensus 325 -----~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~~a~~~~~ 366 (517)
...+++++++++++......|++|...+++++++..+..+..
T Consensus 778 ~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i 824 (854)
T 1qvr_A 778 AEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKI 824 (854)
T ss_dssp HTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHH
T ss_pred HhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 135899999999885322369999999999998876655543
No 75
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.49 E-value=5.8e-13 Score=136.29 Aligned_cols=145 Identities=20% Similarity=0.259 Sum_probs=93.9
Q ss_pred eEEEEEeCcchhcccC------------chHHHHHhccCC-------CCCCcEEEEEEE-----CCCCcchhhccccccc
Q 010136 240 MMLIIADELDYLITRD------------RAVLHDLFMLTT-------FPFSRFILIGIA-----NAIDLADRFLPRLQSM 295 (517)
Q Consensus 240 ~~vI~iDEiD~L~~~~------------~~~L~~l~~~~~-------~~~~~v~lI~ia-----n~~~~~~~l~~~l~sr 295 (517)
..++++||||.+.... |+.|..+++-.+ ...+++.+|+++ |. ..+.|.+.+|
T Consensus 251 ~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~----~dlipel~~R 326 (444)
T 1g41_A 251 NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARP----SDLIPELQGR 326 (444)
T ss_dssp HCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCG----GGSCHHHHTT
T ss_pred CCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCCh----hhcchHHhcc
Confidence 4589999999997541 346777776421 234678889876 43 3356889998
Q ss_pred CCCceEEEeCCCCHHHHHHHHHH---HH-----h--hhc--cCCCChhHHHHHHHHHHH-----HhCCHHHHHHHHHHHH
Q 010136 296 NCKPLVVTFRAYSKDQIIRILQE---RL-----M--ELS--YIVFQPQALELCARKVAA-----ASGDMRKALSVCRSAI 358 (517)
Q Consensus 296 ~~~~~~i~f~p~~~~e~~~IL~~---rl-----~--~~~--~~~~~~~ai~~ia~~~~~-----~~Gd~R~al~ll~~A~ 358 (517)
| +.++.|++|+.+++..|+.. .+ . +.. .-.|++++++.+++.... ..+++|..-.++..++
T Consensus 327 -~-~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~ 404 (444)
T 1g41_A 327 -L-PIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLM 404 (444)
T ss_dssp -C-CEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHH
T ss_pred -c-ceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHH
Confidence 6 45799999999999999941 11 1 111 236899999999987543 3467887666666655
Q ss_pred HHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccC
Q 010136 359 EILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKS 412 (517)
Q Consensus 359 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~ 412 (517)
.-+..+--... ...+ .|+.+.|...+......
T Consensus 405 ~~~~~~~~~~~--------~~~~--------------~i~~~~v~~~l~~~~~~ 436 (444)
T 1g41_A 405 DKISFSASDMN--------GQTV--------------NIDAAYVADALGEVVEN 436 (444)
T ss_dssp HHHHHHGGGCT--------TCEE--------------EECHHHHHHHHTTTTTC
T ss_pred HHHHhhccccC--------CCeE--------------EEeHHHHHHhcCccccC
Confidence 44333221100 0111 68888888877655443
No 76
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.49 E-value=5e-13 Score=131.41 Aligned_cols=170 Identities=11% Similarity=0.120 Sum_probs=116.8
Q ss_pred HHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCC-CCCHHHHHHHHHHHhCCCCCC
Q 010136 137 LEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTS-LTNTSEIFSKILLKLQPRKKL 215 (517)
Q Consensus 137 ~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~-~~s~~~i~~~i~~~l~~~~~~ 215 (517)
...|...+..+..++++|+||||+|||++++.+++.+.. .......++++++.. ..+...
T Consensus 6 ~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~----~~~~~~d~~~l~~~~~~~~id~--------------- 66 (305)
T 2gno_A 6 LETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEK----FPPKASDVLEIDPEGENIGIDD--------------- 66 (305)
T ss_dssp HHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHT----SCCCTTTEEEECCSSSCBCHHH---------------
T ss_pred HHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCch----hhccCCCEEEEcCCcCCCCHHH---------------
Confidence 334444455455678999999999999999999986431 111124678888653 222222
Q ss_pred CCCCCHHHHHHHHHHhh-hccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCCCcchhhcccccc
Q 010136 216 NGSTSPLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQS 294 (517)
Q Consensus 216 ~~~~~~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~s 294 (517)
+++++... ......+..|+||||+|.|....++.|...++.+ ...+++|++++. +..+.+.++|
T Consensus 67 ---------ir~li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep---~~~t~fIl~t~~---~~kl~~tI~S 131 (305)
T 2gno_A 67 ---------IRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEP---PEYAVIVLNTRR---WHYLLPTIKS 131 (305)
T ss_dssp ---------HHHHHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSC---CTTEEEEEEESC---GGGSCHHHHT
T ss_pred ---------HHHHHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCC---CCCeEEEEEECC---hHhChHHHHc
Confidence 22222211 1111244679999999999877778887777653 457777887874 6788999999
Q ss_pred cCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 010136 295 MNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRSAI 358 (517)
Q Consensus 295 r~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~ 358 (517)
| .+.|.|++.+++.++|..++ + +++++++ ...||+|.|+++++...
T Consensus 132 R-----~~~f~~l~~~~i~~~L~~~~-~-----i~~~~~~-------~~~g~~~~al~~l~~~~ 177 (305)
T 2gno_A 132 R-----VFRVVVNVPKEFRDLVKEKI-G-----DLWEELP-------LLERDFKTALEAYKLGA 177 (305)
T ss_dssp T-----SEEEECCCCHHHHHHHHHHH-T-----THHHHCG-------GGGTCHHHHHHHHHHHH
T ss_pred e-----eEeCCCCCHHHHHHHHHHHh-C-----CCHHHHH-------HHCCCHHHHHHHHHHHH
Confidence 7 68999999999999999876 1 4555542 25899999999986544
No 77
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.47 E-value=7.4e-17 Score=179.02 Aligned_cols=204 Identities=18% Similarity=0.225 Sum_probs=132.7
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhc---------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCC
Q 010136 123 PSTIVCREDEQKKVLEFCKKNLE---------EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCT 193 (517)
Q Consensus 123 p~~l~gRe~e~~~l~~~L~~~l~---------~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~ 193 (517)
.+.+.|.++..+.|.+++...+. -..+.+++|+||||||||+++++++..+. ..++++++.
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~----------~~~i~v~~~ 545 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ----------ANFISIKGP 545 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT----------CCCCCCCCS
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC----------CCEEEEech
Confidence 45788888877777766543211 12456899999999999999999998874 357888887
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC-----------chHHHHH
Q 010136 194 SLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD-----------RAVLHDL 262 (517)
Q Consensus 194 ~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~-----------~~~L~~l 262 (517)
.+.+.+. +.. ...+..+|... ....++||||||||.+.... ..++..|
T Consensus 546 ~l~~~~~-----------------g~~-~~~i~~~f~~a---~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~L 604 (806)
T 1ypw_A 546 ELLTMWF-----------------GES-EANVREIFDKA---RQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQI 604 (806)
T ss_dssp SSTTCCT-----------------TTS-SHHHHHHHHHH---HHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHH
T ss_pred Hhhhhhc-----------------Ccc-HHHHHHHHHHH---HhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHH
Confidence 7644321 222 34566666531 23346799999999997542 2345566
Q ss_pred hccCC--CCCCcEEEEEEECCCCcchhhcccccc--cCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHH
Q 010136 263 FMLTT--FPFSRFILIGIANAIDLADRFLPRLQS--MNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCAR 338 (517)
Q Consensus 263 ~~~~~--~~~~~v~lI~ian~~~~~~~l~~~l~s--r~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~ 338 (517)
+.... ....+++||++|| .++.+++++.+ | |. ..|+|++|+.++..+|++.++.... ...+..++.+++
T Consensus 605 L~~ld~~~~~~~v~vI~tTN---~~~~ld~allrpgR-f~-~~i~~~~p~~~~r~~Il~~~l~~~~--~~~~~~l~~la~ 677 (806)
T 1ypw_A 605 LTEMDGMSTKKNVFIIGATN---RPDIIDPAILRPGR-LD-QLIYIPLPDEKSRVAILKANLRKSP--VAKDVDLEFLAK 677 (806)
T ss_dssp HTTCC------CCBCCCCCB---SCGGGSCTTSSGGG-TT-SCCCCCCCCCSHHHHHTTTTTSCC------CCCCSCSCG
T ss_pred HHHHhcccccCCeEEEEecC---CcccCCHHHhCccc-cC-ceeecCCCCHHHHHHHHHHHhccCC--CCcccCHHHHHH
Confidence 65532 2345789999999 46778899988 6 53 5899999999999999998876431 112222344444
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHH
Q 010136 339 KVAAASGDMRKALSVCRSAIEILEAEMR 366 (517)
Q Consensus 339 ~~~~~~Gd~R~al~ll~~A~~~a~~~~~ 366 (517)
.....+| +..-.+|+.|+..|.++..
T Consensus 678 ~t~g~sg--adi~~l~~~a~~~a~~~~~ 703 (806)
T 1ypw_A 678 MTNGFSG--ADLTEICQRACKLAIRESI 703 (806)
T ss_dssp GGSSSCC--HHHHHHHHHHHHHHHSCC-
T ss_pred hccccCH--HHHHHHHHHHHHHHHHHHH
Confidence 3333444 2333688888888776543
No 78
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.47 E-value=2.6e-13 Score=150.54 Aligned_cols=199 Identities=15% Similarity=0.139 Sum_probs=130.0
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFS 203 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~ 203 (517)
+.++||+++++.+...|.. ...++++|+||||||||++|+.+++.+.............++.+++ ...+.
T Consensus 180 d~iiG~~~~i~~l~~~l~~----~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---g~~~~--- 249 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSR----RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---GTKYR--- 249 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHC----SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred CCccCchHHHHHHHHHHhC----CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---ccccc---
Confidence 5799999999998888654 4567899999999999999999999875311000111245677776 11110
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCCC
Q 010136 204 KILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAID 283 (517)
Q Consensus 204 ~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~ 283 (517)
|. ....+..+|... ....+.||||| ...+....|... .....+.+||++|..+
T Consensus 250 --------------G~-~e~~l~~~~~~~---~~~~~~iLfiD-------~~~~~~~~L~~~--l~~~~v~~I~at~~~~ 302 (758)
T 3pxi_A 250 --------------GE-FEDRLKKVMDEI---RQAGNIILFID-------AAIDASNILKPS--LARGELQCIGATTLDE 302 (758)
T ss_dssp ------------------CTTHHHHHHHH---HTCCCCEEEEC-------C--------CCC--TTSSSCEEEEECCTTT
T ss_pred --------------ch-HHHHHHHHHHHH---HhcCCEEEEEc-------CchhHHHHHHHH--HhcCCEEEEeCCChHH
Confidence 11 122344455421 13467899999 112222222222 2356789999998655
Q ss_pred cch--hhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhh---ccCCCChhHHHHHHHHHHHHhC---CHHHHHHHHH
Q 010136 284 LAD--RFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMEL---SYIVFQPQALELCARKVAAASG---DMRKALSVCR 355 (517)
Q Consensus 284 ~~~--~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~---~~~~~~~~ai~~ia~~~~~~~G---d~R~al~ll~ 355 (517)
+.. .+++++.+| | +.|.|++++.+++.+||+..+..+ ....+++++++.+++....+.+ -+++|+++++
T Consensus 303 ~~~~~~~d~al~rR-f--~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~ 379 (758)
T 3pxi_A 303 YRKYIEKDAALERR-F--QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLID 379 (758)
T ss_dssp THHHHTTCSHHHHS-E--EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHH
T ss_pred HHHHhhccHHHHhh-C--cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHH
Confidence 322 468999998 7 689999999999999999665532 3456899999999987766543 3688999998
Q ss_pred HHHHHHH
Q 010136 356 SAIEILE 362 (517)
Q Consensus 356 ~A~~~a~ 362 (517)
.|+..+.
T Consensus 380 ~a~~~~~ 386 (758)
T 3pxi_A 380 EAGSKVR 386 (758)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876544
No 79
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.46 E-value=2.2e-13 Score=142.28 Aligned_cols=213 Identities=15% Similarity=0.093 Sum_probs=133.3
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFS 203 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~ 203 (517)
..++|+++.++.+...+.. +.+++|+||||||||+++++++..+.. ...+.+++|.- .++..++.
T Consensus 22 ~~ivGq~~~i~~l~~al~~------~~~VLL~GpPGtGKT~LAraLa~~l~~--------~~~f~~~~~~~-~t~~dL~G 86 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS------GESVFLLGPPGIAKSLIARRLKFAFQN--------ARAFEYLMTRF-STPEEVFG 86 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH------TCEEEEECCSSSSHHHHHHHGGGGBSS--------CCEEEEECCTT-CCHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHhc------CCeeEeecCchHHHHHHHHHHHHHHhh--------hhHHHHHHHhc-CCHHHhcC
Confidence 3579999988777666543 469999999999999999999876531 12466777753 35544321
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCC--------CCCCcEEE
Q 010136 204 KILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTT--------FPFSRFIL 275 (517)
Q Consensus 204 ~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~--------~~~~~v~l 275 (517)
. +... . ... ...|..........+.|||||||+.+....+..|..+++... .....+ +
T Consensus 87 ~----~~~~-------~-~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~-i 152 (500)
T 3nbx_X 87 P----LSIQ-------A-LKD-EGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRL-L 152 (500)
T ss_dssp C----BC-------------------CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCE-E
T ss_pred c----ccHH-------H-Hhh-chhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhh-h
Confidence 1 1000 0 000 011210000000135699999999988777788888775311 112334 5
Q ss_pred EEEECCCCcchhhcccccccCCCceEEEeCCCCH-HHHHHHHHHHHh----------------------hhccCCCChhH
Q 010136 276 IGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSK-DQIIRILQERLM----------------------ELSYIVFQPQA 332 (517)
Q Consensus 276 I~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~-~e~~~IL~~rl~----------------------~~~~~~~~~~a 332 (517)
|++||.+.-...+.+++.+| | ...+.+++++. ++...|+..+.. ......+++++
T Consensus 153 I~ATN~lpe~~~~~~aLldR-F-~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v 230 (500)
T 3nbx_X 153 VAASNELPEADSSLEALYDR-M-LIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHV 230 (500)
T ss_dssp EEEESSCCCTTCTTHHHHTT-C-CEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHH
T ss_pred hhccccCCCccccHHHHHHH-H-HHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHH
Confidence 66688532222344678888 6 45788888876 677788875432 11234678888
Q ss_pred HHHHHHHHHH-------HhCCHHHHHHHHHHHHHHHHHHHHh
Q 010136 333 LELCARKVAA-------ASGDMRKALSVCRSAIEILEAEMRE 367 (517)
Q Consensus 333 i~~ia~~~~~-------~~Gd~R~al~ll~~A~~~a~~~~~~ 367 (517)
++++++.+.. ...+.|.++.+++.|...|..+++.
T Consensus 231 ~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~ 272 (500)
T 3nbx_X 231 FELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRS 272 (500)
T ss_dssp HHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCc
Confidence 9999887632 1347899999999998888888876
No 80
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.44 E-value=1e-13 Score=125.83 Aligned_cols=156 Identities=13% Similarity=0.192 Sum_probs=95.3
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHH
Q 010136 123 PSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIF 202 (517)
Q Consensus 123 p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~ 202 (517)
.+.++||+.+++.+...+.. ....+++|+||||||||++++.+++.+.............++++++..+.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~----~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 90 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSR----RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLI------ 90 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTS----SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHH------
T ss_pred cchhhcchHHHHHHHHHHhC----CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhh------
Confidence 45689999999888877643 45778999999999999999999988753110000112467777763321
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcc-----c----CchHHHHHhccCCCCCCcE
Q 010136 203 SKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLIT-----R----DRAVLHDLFMLTTFPFSRF 273 (517)
Q Consensus 203 ~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~-----~----~~~~L~~l~~~~~~~~~~v 273 (517)
.... . .......+..++.... ....+.||||||+|.+.. . -.+.|..+++ ...+
T Consensus 91 ----~~~~-----~-~~~~~~~~~~~~~~~~--~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~-----~~~~ 153 (187)
T 2p65_A 91 ----AGAK-----Y-RGDFEERLKSILKEVQ--DAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLA-----RGEL 153 (187)
T ss_dssp ----HHCC-----S-HHHHHHHHHHHHHHHH--HTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHH-----TTCS
T ss_pred ----cCCC-----c-hhHHHHHHHHHHHHHH--hcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHh-----cCCe
Confidence 0000 0 0001223444443211 234568999999999972 2 1234444442 2467
Q ss_pred EEEEEECCCCcc--hhhcccccccCCCceEEEeCCCC
Q 010136 274 ILIGIANAIDLA--DRFLPRLQSMNCKPLVVTFRAYS 308 (517)
Q Consensus 274 ~lI~ian~~~~~--~~l~~~l~sr~~~~~~i~f~p~~ 308 (517)
.+|+++|..++. ..+++++.+| | ..+.+++++
T Consensus 154 ~ii~~~~~~~~~~~~~~~~~l~~R-~--~~i~i~~p~ 187 (187)
T 2p65_A 154 RCIGATTVSEYRQFIEKDKALERR-F--QQILVEQPS 187 (187)
T ss_dssp CEEEEECHHHHHHHTTTCHHHHHH-E--EEEECCSCC
T ss_pred eEEEecCHHHHHHHHhccHHHHHh-c--CcccCCCCC
Confidence 788888853321 2467899998 7 468887764
No 81
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.35 E-value=1.3e-12 Score=145.06 Aligned_cols=201 Identities=17% Similarity=0.184 Sum_probs=130.8
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhc---------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeC
Q 010136 122 APSTIVCREDEQKKVLEFCKKNLE---------EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINC 192 (517)
Q Consensus 122 ~p~~l~gRe~e~~~l~~~L~~~l~---------~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~ 192 (517)
..++++|.+++++.|.+++...+. -..+.+++|+||||||||+++++++..+. ..+++++|
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~----------~~~i~v~~ 271 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG----------AFFFLING 271 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT----------CEEEEEEH
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC----------CcEEEEEc
Confidence 446899999999999999876332 13466899999999999999999987653 46899998
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCc-----------hHHHH
Q 010136 193 TSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDR-----------AVLHD 261 (517)
Q Consensus 193 ~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~-----------~~L~~ 261 (517)
..+.+.+ .......+..+|... ....+.++||||+|.+..... ..|..
T Consensus 272 ~~l~~~~------------------~g~~~~~l~~vf~~a---~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ 330 (806)
T 1ypw_A 272 PEIMSKL------------------AGESESNLRKAFEEA---EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLT 330 (806)
T ss_dssp HHHSSSS------------------TTHHHHHHHHHHHHH---HHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHH
T ss_pred hHhhhhh------------------hhhHHHHHHHHHHHH---HhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHH
Confidence 5432210 111244555566532 123568999999999976421 22333
Q ss_pred HhccCCCCCCcEEEEEEECCCCcchhhcccccc--cCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHH
Q 010136 262 LFMLTTFPFSRFILIGIANAIDLADRFLPRLQS--MNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARK 339 (517)
Q Consensus 262 l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~s--r~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~ 339 (517)
+++.. .....+++|+++|. ++.+++.+.+ | | ...+.+..++.++..+|+...+..+. ..++..+..++..
T Consensus 331 ll~g~-~~~~~v~vI~atn~---~~~ld~al~r~gR-f-~~~i~i~~p~~~~r~~il~~~~~~~~--l~~~~~l~~la~~ 402 (806)
T 1ypw_A 331 LMDGL-KQRAHVIVMAATNR---PNSIDPALRRFGR-F-DREVDIGIPDATGRLEILQIHTKNMK--LADDVDLEQVANE 402 (806)
T ss_dssp HHHSS-CTTSCCEEEEECSC---TTTSCTTTTSTTS-S-CEEECCCCCCHHHHHHHHHHTTTTSC--CCTTCCTHHHHHS
T ss_pred Hhhhh-cccccEEEecccCC---chhcCHHHhcccc-c-ccccccCCCCHHHHHHHHHHHHhcCC--CcccchhHHHHHh
Confidence 33322 23467899999995 4567777776 4 4 36899999999999999997766441 2233334555542
Q ss_pred HHHHhCC-HHHHHHHHHHHHHHHHHH
Q 010136 340 VAAASGD-MRKALSVCRSAIEILEAE 364 (517)
Q Consensus 340 ~~~~~Gd-~R~al~ll~~A~~~a~~~ 364 (517)
..|. .+....+++.|+..+.+.
T Consensus 403 ---t~g~~g~dl~~l~~ea~~~a~r~ 425 (806)
T 1ypw_A 403 ---THGHVGADLAALCSEAALQAIRK 425 (806)
T ss_dssp ---CSSCCHHHHHHHHHHHHHHHHHH
T ss_pred ---hcCcchHHHHHHHHHHHHHHHhh
Confidence 3343 233345666666555443
No 82
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.31 E-value=3.6e-13 Score=117.71 Aligned_cols=138 Identities=15% Similarity=0.186 Sum_probs=91.0
Q ss_pred CCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHH
Q 010136 125 TIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSK 204 (517)
Q Consensus 125 ~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~ 204 (517)
.++|++..++.+...+..... ...+++|+||||||||++|+++...... .+ ..++ ++|....+..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~--~~~~vll~G~~GtGKt~lA~~i~~~~~~----~~---~~~v-~~~~~~~~~~----- 66 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE--TDIAVWLYGAPGTGRMTGARYLHQFGRN----AQ---GEFV-YRELTPDNAP----- 66 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT--CCSCEEEESSTTSSHHHHHHHHHHSSTT----TT---SCCE-EEECCTTTSS-----
T ss_pred CceeCCHHHHHHHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHHHhCCc----cC---CCEE-EECCCCCcch-----
Confidence 578999999999999887653 5678999999999999999998765422 11 2467 9998764430
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCCCc
Q 010136 205 ILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAIDL 284 (517)
Q Consensus 205 i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~~ 284 (517)
.+...+... ...+|||||+|.+....|..|..++.. ....+.+|+++|.. +
T Consensus 67 -------------------~~~~~~~~a------~~g~l~ldei~~l~~~~q~~Ll~~l~~---~~~~~~~I~~t~~~-~ 117 (145)
T 3n70_A 67 -------------------QLNDFIALA------QGGTLVLSHPEHLTREQQYHLVQLQSQ---EHRPFRLIGIGDTS-L 117 (145)
T ss_dssp -------------------CHHHHHHHH------TTSCEEEECGGGSCHHHHHHHHHHHHS---SSCSSCEEEEESSC-H
T ss_pred -------------------hhhcHHHHc------CCcEEEEcChHHCCHHHHHHHHHHHhh---cCCCEEEEEECCcC-H
Confidence 012233311 124799999999987777777777633 23456688888852 1
Q ss_pred ch-----hhcccccccCCCceEEEeCCC
Q 010136 285 AD-----RFLPRLQSMNCKPLVVTFRAY 307 (517)
Q Consensus 285 ~~-----~l~~~l~sr~~~~~~i~f~p~ 307 (517)
.+ .+.+.+..| +....|.++|+
T Consensus 118 ~~~~~~~~~~~~L~~r-l~~~~i~lPpL 144 (145)
T 3n70_A 118 VELAASNHIIAELYYC-FAMTQIACLPL 144 (145)
T ss_dssp HHHHHHSCCCHHHHHH-HHHHEEECCCC
T ss_pred HHHHHcCCCCHHHHHH-hcCCEEeCCCC
Confidence 11 233444454 44457888876
No 83
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.30 E-value=1.2e-13 Score=148.14 Aligned_cols=140 Identities=15% Similarity=0.090 Sum_probs=98.0
Q ss_pred EEEEEeCcchhcccCchHHHHHhccCCC----------CCCcEEEEEEECCCCcch----------hhcccccccCCCce
Q 010136 241 MLIIADELDYLITRDRAVLHDLFMLTTF----------PFSRFILIGIANAIDLAD----------RFLPRLQSMNCKPL 300 (517)
Q Consensus 241 ~vI~iDEiD~L~~~~~~~L~~l~~~~~~----------~~~~v~lI~ian~~~~~~----------~l~~~l~sr~~~~~ 300 (517)
.|+||||||.+....+..|..+++.... ...++.+|+++|...-.. .+.+.+.+| |..
T Consensus 393 gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~R-FDl- 470 (595)
T 3f9v_A 393 GIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSR-FDL- 470 (595)
T ss_dssp SEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGG-CSC-
T ss_pred CcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhh-CeE-
Confidence 5999999999988778888888764221 135788999999753111 577889998 644
Q ss_pred EEEeCCCCHHHHHHHHHHHHhhhc------------------------cCCCChhHHHHHHHHHHH------------Hh
Q 010136 301 VVTFRAYSKDQIIRILQERLMELS------------------------YIVFQPQALELCARKVAA------------AS 344 (517)
Q Consensus 301 ~i~f~p~~~~e~~~IL~~rl~~~~------------------------~~~~~~~ai~~ia~~~~~------------~~ 344 (517)
.+.+.++...+...|+.+.+.... ...+++++.+.+.+.+.. ..
T Consensus 471 ~~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~ 550 (595)
T 3f9v_A 471 IFILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPIL 550 (595)
T ss_dssp CEEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBC
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 445555555445555554443110 125677777777775532 45
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhc
Q 010136 345 GDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTF 410 (517)
Q Consensus 345 Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~ 410 (517)
+++|.+..+++.|...|..+++. .|+.+|+.+|+.-+.
T Consensus 551 ~s~R~l~~lirla~a~A~l~~~~----------------------------~V~~~dv~~Ai~l~~ 588 (595)
T 3f9v_A 551 ITPRQLEALIRISEAYAKMALKA----------------------------EVTREDAERAINIMR 588 (595)
T ss_dssp SSTTTTTHHHHHHHHHHHTTSSC----------------------------CSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhCcC----------------------------CCCHHHHHHHHHHHH
Confidence 78999999999999888877766 899999999997654
No 84
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.26 E-value=4.9e-11 Score=128.63 Aligned_cols=138 Identities=19% Similarity=0.203 Sum_probs=98.2
Q ss_pred EEEEEeCcchhcccCchHHHHHhccCC------------------CCCCcEEEEEEECCCCcchhhcccccccCCCc--e
Q 010136 241 MLIIADELDYLITRDRAVLHDLFMLTT------------------FPFSRFILIGIANAIDLADRFLPRLQSMNCKP--L 300 (517)
Q Consensus 241 ~vI~iDEiD~L~~~~~~~L~~l~~~~~------------------~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~--~ 300 (517)
.+|||||++.|....|+.|..+++... ....++.||+++|.. ....+++.+.+| |.. .
T Consensus 203 gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~-~~~~l~~~l~~R-~~v~~i 280 (604)
T 3k1j_A 203 GVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLD-TVDKMHPALRSR-IRGYGY 280 (604)
T ss_dssp SEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHH-HHHHSCHHHHHH-HHHHSE
T ss_pred CEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHH-HHhhcCHHHHHH-hhccce
Confidence 499999999997767777877776311 112467899988852 234678888888 531 3
Q ss_pred EEEeCCC---CHHHHHHHHHHHHhhh----ccCCCChhHHHHHHHHHHHHhC-------CHHHHHHHHHHHHHHHHHHHH
Q 010136 301 VVTFRAY---SKDQIIRILQERLMEL----SYIVFQPQALELCARKVAAASG-------DMRKALSVCRSAIEILEAEMR 366 (517)
Q Consensus 301 ~i~f~p~---~~~e~~~IL~~rl~~~----~~~~~~~~ai~~ia~~~~~~~G-------d~R~al~ll~~A~~~a~~~~~ 366 (517)
.+.|+++ +.+.+..++....... ....+++++++.+.+......| .+|.+.++++.|..+|..++.
T Consensus 281 ~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~ 360 (604)
T 3k1j_A 281 EVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGK 360 (604)
T ss_dssp EEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTC
T ss_pred EeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCc
Confidence 5666543 5556666665433222 2247899999999987766677 499999999999988877665
Q ss_pred hhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHH
Q 010136 367 ESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSN 408 (517)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~ 408 (517)
. .|+.+||.+|+..
T Consensus 361 ~----------------------------~I~~edv~~A~~~ 374 (604)
T 3k1j_A 361 K----------------------------YVEREDVIEAVKM 374 (604)
T ss_dssp S----------------------------SBCHHHHHHHHHH
T ss_pred c----------------------------cccHHHHHHHHHh
Confidence 5 7999999999854
No 85
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.25 E-value=2.9e-12 Score=111.69 Aligned_cols=136 Identities=7% Similarity=-0.002 Sum_probs=92.4
Q ss_pred CCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHH
Q 010136 125 TIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSK 204 (517)
Q Consensus 125 ~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~ 204 (517)
.++|++..++++.+.+..... ...+++|+|+||||||++|++++.... .+++++|..+.. .
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~--~~~~vll~G~~GtGKt~lA~~i~~~~~-----------~~~~~~~~~~~~--~---- 65 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK--RTSPVFLTGEAGSPFETVARYFHKNGT-----------PWVSPARVEYLI--D---- 65 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT--CSSCEEEEEETTCCHHHHHGGGCCTTS-----------CEECCSSTTHHH--H----
T ss_pred CceeCCHHHHHHHHHHHHHhC--CCCcEEEECCCCccHHHHHHHHHHhCC-----------CeEEechhhCCh--H----
Confidence 478999999999999887654 456899999999999999999865431 488899976421 1
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECCC-C
Q 010136 205 ILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANAI-D 283 (517)
Q Consensus 205 i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~-~ 283 (517)
.....+.. . ...+|||||+|.+....|..|..+++... ...+.+|+++|.. +
T Consensus 66 -------------------~~~~~~~~----a--~~~~l~lDei~~l~~~~q~~Ll~~l~~~~--~~~~~iI~~tn~~~~ 118 (143)
T 3co5_A 66 -------------------MPMELLQK----A--EGGVLYVGDIAQYSRNIQTGITFIIGKAE--RCRVRVIASCSYAAG 118 (143)
T ss_dssp -------------------CHHHHHHH----T--TTSEEEEEECTTCCHHHHHHHHHHHHHHT--TTTCEEEEEEEECTT
T ss_pred -------------------hhhhHHHh----C--CCCeEEEeChHHCCHHHHHHHHHHHHhCC--CCCEEEEEecCCCHH
Confidence 02233331 1 12489999999998777777777766532 3457788878742 1
Q ss_pred -cchhhcccccccCCCceEEEeCCC
Q 010136 284 -LADRFLPRLQSMNCKPLVVTFRAY 307 (517)
Q Consensus 284 -~~~~l~~~l~sr~~~~~~i~f~p~ 307 (517)
+...+.+.+..| +....|.+||+
T Consensus 119 ~~~~~~~~~L~~r-l~~~~i~lPpL 142 (143)
T 3co5_A 119 SDGISCEEKLAGL-FSESVVRIPPL 142 (143)
T ss_dssp TC--CHHHHHHHH-SSSEEEEECCC
T ss_pred HHHhCccHHHHHH-hcCcEEeCCCC
Confidence 111155667777 56678888886
No 86
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=99.15 E-value=7.4e-10 Score=111.00 Aligned_cols=172 Identities=16% Similarity=0.107 Sum_probs=118.6
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHH
Q 010136 147 EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQ 226 (517)
Q Consensus 147 ~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~ 226 (517)
.-.+..+|+||+|+||+++++.+++.+.+. +...+.++.+++ ..+...+..
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~--~~~~~~l~~----------------------- 66 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQ----GFEEHHTFSIDP--NTDWNAIFS----------------------- 66 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHH----TCCEEEEEECCT--TCCHHHHHH-----------------------
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhC----CCCeeEEEEecC--CCCHHHHHH-----------------------
Confidence 456788899999999999999999887642 221122334442 122222211
Q ss_pred HHHHhhhccCCCceEEEEEeCcch-hcccCchHHHHHhccCCCCCCcEEEEEEECCCCc---chhhcccccccCCCceEE
Q 010136 227 NLYSQKLHSSVMKMMLIIADELDY-LITRDRAVLHDLFMLTTFPFSRFILIGIANAIDL---ADRFLPRLQSMNCKPLVV 302 (517)
Q Consensus 227 ~~~~~~~~~~~~~~~vI~iDEiD~-L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~~~---~~~l~~~l~sr~~~~~~i 302 (517)
. ... ..-.+...|++|||+|. +....++.|...++.+ ...+++|.+++..+- ...+.+.+.+| + ..+
T Consensus 67 ~-~~~--~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p---~~~~~~il~~~~~~~~~~~~k~~~~i~sr-~--~~~ 137 (343)
T 1jr3_D 67 L-CQA--MSLFASRQTLLLLLPENGPNAAINEQLLTLTGLL---HDDLLLIVRGNKLSKAQENAAWFTALANR-S--VQV 137 (343)
T ss_dssp H-HHH--HHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTC---BTTEEEEEEESCCCTTTTTSHHHHHHTTT-C--EEE
T ss_pred H-hcC--cCCccCCeEEEEECCCCCCChHHHHHHHHHHhcC---CCCeEEEEEcCCCChhhHhhHHHHHHHhC-c--eEE
Confidence 1 110 00123457999999999 8766667777777643 345666666765442 34567888888 6 799
Q ss_pred EeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 010136 303 TFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRSAIEI 360 (517)
Q Consensus 303 ~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~~~ 360 (517)
.|.+++..++...+..++... ...+++++++++++ ...||+|.+++.+.....+
T Consensus 138 ~~~~l~~~~l~~~l~~~~~~~-g~~i~~~a~~~l~~---~~~gdl~~~~~elekl~l~ 191 (343)
T 1jr3_D 138 TCQTPEQAQLPRWVAARAKQL-NLELDDAANQVLCY---CYEGNLLALAQALERLSLL 191 (343)
T ss_dssp EECCCCTTHHHHHHHHHHHHT-TCEECHHHHHHHHH---SSTTCHHHHHHHHHHHHHH
T ss_pred EeeCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHH---HhchHHHHHHHHHHHHHHh
Confidence 999999999999999888743 23689999999987 5789999999999887654
No 87
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.96 E-value=1.8e-09 Score=109.96 Aligned_cols=212 Identities=16% Similarity=0.140 Sum_probs=134.5
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFS 203 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~ 203 (517)
..++|....++++.+.+..... ...+++|+|++|||||++++.+...... ..-.|+.+||..+.. ..+-
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a~--~~~~vli~Ge~GtGK~~lAr~ih~~s~r-------~~~~fv~v~~~~~~~-~~~~- 205 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKISC--AECPVLITGESGVGKEVVARLIHKLSDR-------SKEPFVALNVASIPR-DIFE- 205 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTT--CCSCEEEECSTTSSHHHHHHHHHHHSTT-------TTSCEEEEETTTSCH-HHHH-
T ss_pred hhhhhccHHhhHHHHHHHHhcC--CCCCeEEecCCCcCHHHHHHHHHHhcCC-------CCCCeEEEecCCCCH-HHHH-
Confidence 4678888888888888887543 4567899999999999999987654321 113699999998642 2222
Q ss_pred HHHHHhCCCCCCC-CCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCC--------CCCCcEE
Q 010136 204 KILLKLQPRKKLN-GSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTT--------FPFSRFI 274 (517)
Q Consensus 204 ~i~~~l~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~--------~~~~~v~ 274 (517)
.+|.+...+. .|... .-..+|.. .. ..+||||||+.|....|..|..+++... .....+-
T Consensus 206 ---~elfg~~~g~~tga~~--~~~g~~~~----a~--~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~r 274 (387)
T 1ny5_A 206 ---AELFGYEKGAFTGAVS--SKEGFFEL----AD--GGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVR 274 (387)
T ss_dssp ---HHHHCBCTTSSTTCCS--CBCCHHHH----TT--TSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCE
T ss_pred ---HHhcCCCCCCCCCccc--ccCCceee----CC--CcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEE
Confidence 2232222211 11100 00112321 11 2489999999998877877777765421 1124677
Q ss_pred EEEEECCCCcch-----hhcccccccCCCceEEEeCCCCH--HHHHHHHHHHHhhh------ccCCCChhHHHHHHHHHH
Q 010136 275 LIGIANAIDLAD-----RFLPRLQSMNCKPLVVTFRAYSK--DQIIRILQERLMEL------SYIVFQPQALELCARKVA 341 (517)
Q Consensus 275 lI~ian~~~~~~-----~l~~~l~sr~~~~~~i~f~p~~~--~e~~~IL~~rl~~~------~~~~~~~~ai~~ia~~~~ 341 (517)
+|++||. ++.+ .+.+.+..| +....|.+||+.. +++..++.+.+..+ ....+++++++.+..+
T Consensus 275 ii~at~~-~l~~~~~~g~fr~dl~~r-l~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~-- 350 (387)
T 1ny5_A 275 ILAATNR-NIKELVKEGKFREDLYYR-LGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSY-- 350 (387)
T ss_dssp EEEEESS-CHHHHHHTTSSCHHHHHH-HTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHS--
T ss_pred EEEeCCC-CHHHHHHcCCccHHHHHh-hcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC--
Confidence 8888884 2211 123333444 4456899999864 78777777655422 1235899999988763
Q ss_pred HHhCCHHHHHHHHHHHHHHH
Q 010136 342 AASGDMRKALSVCRSAIEIL 361 (517)
Q Consensus 342 ~~~Gd~R~al~ll~~A~~~a 361 (517)
...|++|..-+++++|+.++
T Consensus 351 ~wpGNvreL~~~i~~~~~~~ 370 (387)
T 1ny5_A 351 PWYGNVRELKNVIERAVLFS 370 (387)
T ss_dssp CCTTHHHHHHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHHHHHhC
Confidence 46899999999999988654
No 88
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.95 E-value=1.7e-07 Score=100.83 Aligned_cols=306 Identities=12% Similarity=0.060 Sum_probs=152.1
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHH
Q 010136 122 APSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEI 201 (517)
Q Consensus 122 ~p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i 201 (517)
.|..++||+.+++.|...+... .+..+.+.|+|++|+|||++|..++......... ++ ..++++++... +...+
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~--f~-~~v~wv~~~~~-~~~~~ 195 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKL--KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGC--FP-GGVHWVSVGKQ-DKSGL 195 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTS--TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHH--CT-TCEEEEEEESC-CHHHH
T ss_pred CCCeecccHHHHHHHHHHHhcc--cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhh--CC-CceEEEECCCC-chHHH
Confidence 4457999999999999987642 2345689999999999999999998653210111 11 13566666544 33333
Q ss_pred HHH---HHHHhCCCCCC-CCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEE
Q 010136 202 FSK---ILLKLQPRKKL-NGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIG 277 (517)
Q Consensus 202 ~~~---i~~~l~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ 277 (517)
+.. +...++..... .........+...+... .....++++||||+++.. ..+ ++. ...+.||.
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~LLVLDdv~~~-----~~l----~~l---~~~~~ilv 262 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRIL-MLRKHPRSLLILDDVWDS-----WVL----KAF---DSQCQILL 262 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHH-HHHTCTTCEEEEEEECCH-----HHH----HTT---CSSCEEEE
T ss_pred HHHHHHHHHHhccccccccCCCCCHHHHHHHHHHH-HccCCCCeEEEEeCCCCH-----HHH----HHh---cCCCeEEE
Confidence 333 34455421111 11111123333222211 112335799999999753 222 221 12344555
Q ss_pred EECCCCcchhhcccccccCCCceEEEe---CCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHH
Q 010136 278 IANAIDLADRFLPRLQSMNCKPLVVTF---RAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVC 354 (517)
Q Consensus 278 ian~~~~~~~l~~~l~sr~~~~~~i~f---~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll 354 (517)
+|..... ...+. ...+.+ .+++.++..+++..++..- ...+ ++....+++ ..|....|+.++
T Consensus 263 TsR~~~~----~~~~~-----~~~~~v~~l~~L~~~ea~~L~~~~~~~~-~~~~-~~~~~~i~~----~~~G~PLal~~~ 327 (591)
T 1z6t_A 263 TTRDKSV----TDSVM-----GPKYVVPVESSLGKEKGLEILSLFVNMK-KADL-PEQAHSIIK----ECKGSPLVVSLI 327 (591)
T ss_dssp EESCGGG----GTTCC-----SCEEEEECCSSCCHHHHHHHHHHHHTSC-GGGS-CTHHHHHHH----HHTTCHHHHHHH
T ss_pred ECCCcHH----HHhcC-----CCceEeecCCCCCHHHHHHHHHHHhCCC-cccc-cHHHHHHHH----HhCCCcHHHHHH
Confidence 5663221 11111 122333 5899999999999876431 1112 333444443 445555666554
Q ss_pred HHHHHHHHHHH---HhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccChhHHHhccCCHHHHHHHHH
Q 010136 355 RSAIEILEAEM---RESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSPVVDTIKSLPQHQQILLCS 431 (517)
Q Consensus 355 ~~A~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~~~~~i~~L~~~~k~iL~a 431 (517)
-..+.-..... ........ ...... ...-....+..++ ...+..||...+.+|..
T Consensus 328 a~~l~~~~~~w~~~l~~l~~~~----~~~~~~----------~~~~~~~~l~~~l--------~~s~~~L~~~~~~~l~~ 385 (591)
T 1z6t_A 328 GALLRDFPNRWEYYLKQLQNKQ----FKRIRK----------SSSYDYEALDEAM--------SISVEMLREDIKDYYTD 385 (591)
T ss_dssp HHHHHHSTTCHHHHHHHHHSCC----CCCSSC----------CCSSCCHHHHHHH--------HHHHHTSCTTTHHHHHH
T ss_pred HHHHhcCchhHHHHHHHHHHhH----HHHhhh----------ccccchHHHHHHH--------HHHHHhCCHHHHHHHHH
Confidence 33221000000 00000000 000000 0001112333333 23456788888888775
Q ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhcCceeeccCCceeEEEe
Q 010136 432 AVKFFRGGKKDMTVGELNKSYMNICKTSLIPPVGTLEFFSMCRVLHDQGVLKVGRDDKLKRVTL 495 (517)
Q Consensus 432 l~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~L~~~glI~~~~~~~~~~~~l 495 (517)
+..+.. ...++...+... . .....++..+++.|.+.+||.....|....|.+
T Consensus 386 la~f~~--~~~i~~~~l~~l----~------~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~ 437 (591)
T 1z6t_A 386 LSILQK--DVKVPTKVLCIL----W------DMETEEVEDILQEFVNKSLLFCDRNGKSFRYYL 437 (591)
T ss_dssp GGGCCT--TCCEEHHHHHHH----H------TCCHHHHHHHHHHHHHTTSSEEEEETTEEEEEC
T ss_pred ccccCC--CCccCHHHHHHH----h------ccCHHHHHHHHHHHHhCcCeEEecCCCccEEEE
Confidence 544321 234555444221 1 123456789999999999998654444334444
No 89
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.89 E-value=2.2e-09 Score=108.45 Aligned_cols=211 Identities=14% Similarity=0.174 Sum_probs=134.3
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHH
Q 010136 124 STIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFS 203 (517)
Q Consensus 124 ~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~ 203 (517)
..++|....+.++...+..... ....++|+|++||||+++++.+...... . -.++.+||..+... .+..
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~--~~~~vli~GesGtGKe~lAr~ih~~s~r-------~-~~fv~vnc~~~~~~-~~~~ 197 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK--SKAPVLITGESGTGKEIVARLIHRYSGR-------K-GAFVDLNCASIPQE-LAES 197 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT--SCSCEEEECCTTSSHHHHHHHHHHHHCC-------C-SCEEEEESSSSCTT-THHH
T ss_pred ccccccchHHHHHHhhhhhhhc--cchhheEEeCCCchHHHHHHHHHHhccc-------c-CCcEEEEcccCChH-HHHH
Confidence 3578888888888887776543 4567999999999999999987654321 1 13999999987432 2222
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCC--------CCCcEEE
Q 010136 204 KILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTF--------PFSRFIL 275 (517)
Q Consensus 204 ~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~--------~~~~v~l 275 (517)
.++..-.+... +.. .. -...|.. ..+ .+||||||+.|....|..|..+++.... ....+-+
T Consensus 198 ~lfg~~~g~~t---ga~-~~-~~g~~~~----a~~--gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ri 266 (368)
T 3dzd_A 198 ELFGHEKGAFT---GAL-TR-KKGKLEL----ADQ--GTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRV 266 (368)
T ss_dssp HHHEECSCSSS---SCC-CC-EECHHHH----TTT--SEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEE
T ss_pred HhcCccccccC---Ccc-cc-cCChHhh----cCC--CeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEE
Confidence 22221111111 110 00 0012221 122 3799999999988878877777754211 1235678
Q ss_pred EEEECCCCcch-----hhcccccccCCCceEEEeCCCCH--HHHHHHHHHHHhhh------ccCCCChhHHHHHHHHHHH
Q 010136 276 IGIANAIDLAD-----RFLPRLQSMNCKPLVVTFRAYSK--DQIIRILQERLMEL------SYIVFQPQALELCARKVAA 342 (517)
Q Consensus 276 I~ian~~~~~~-----~l~~~l~sr~~~~~~i~f~p~~~--~e~~~IL~~rl~~~------~~~~~~~~ai~~ia~~~~~ 342 (517)
|++||. ++.. .+.+.+..| +....|.+||+.. +++..++.+.+..+ ....+++++++.+..+ .
T Consensus 267 i~at~~-~l~~~v~~g~fr~dL~~r-l~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~--~ 342 (368)
T 3dzd_A 267 ISATNK-NLEEEIKKGNFREDLYYR-LSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQ--E 342 (368)
T ss_dssp EEEESS-CHHHHHHTTSSCHHHHHH-HTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTC--C
T ss_pred EEecCC-CHHHHHHcCCccHHHHHH-hCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC--C
Confidence 888874 3322 223345555 5556899999977 78877777665422 2245899999998763 3
Q ss_pred HhCCHHHHHHHHHHHHHH
Q 010136 343 ASGDMRKALSVCRSAIEI 360 (517)
Q Consensus 343 ~~Gd~R~al~ll~~A~~~ 360 (517)
..|++|...+++++|+.+
T Consensus 343 wpGNvreL~n~i~~~~~~ 360 (368)
T 3dzd_A 343 WKGNVRELKNLIERAVIL 360 (368)
T ss_dssp CTTHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHh
Confidence 579999999999988754
No 90
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.87 E-value=7.5e-09 Score=125.89 Aligned_cols=164 Identities=17% Similarity=0.165 Sum_probs=108.6
Q ss_pred HHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCC
Q 010136 133 QKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPR 212 (517)
Q Consensus 133 ~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~ 212 (517)
..+...++...+. .+.+++++||||||||++++.++..+ ....++.+|+...++...+...+...+...
T Consensus 1253 T~R~~~ll~~~l~--~~~~vLL~GPpGtGKT~la~~~l~~~---------~~~~~~~infsa~ts~~~~~~~i~~~~~~~ 1321 (2695)
T 4akg_A 1253 TIKHEKIFYDLLN--SKRGIILCGPPGSGKTMIMNNALRNS---------SLYDVVGINFSKDTTTEHILSALHRHTNYV 1321 (2695)
T ss_dssp HHHHHHHHHHHHH--HTCEEEEECSTTSSHHHHHHHHHHSC---------SSCEEEEEECCTTCCHHHHHHHHHHHBCCE
T ss_pred hHHHHHHHHHHHH--CCCeEEEECCCCCCHHHHHHHHHhcC---------CCCceEEEEeecCCCHHHHHHHHHHHhhhc
Confidence 3344555555555 34799999999999999998775442 225788999999888777655554444211
Q ss_pred CCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC------chHHHHHhccCC----CCC-----CcEEEEE
Q 010136 213 KKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD------RAVLHDLFMLTT----FPF-----SRFILIG 277 (517)
Q Consensus 213 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~------~~~L~~l~~~~~----~~~-----~~v~lI~ 277 (517)
... .|. .+. ....++.+||||||+|...... .+.|.++++... ... .++.+||
T Consensus 1322 ~~~-~g~--------~~~---P~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIa 1389 (2695)
T 4akg_A 1322 TTS-KGL--------TLL---PKSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVG 1389 (2695)
T ss_dssp EET-TTE--------EEE---EBSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEE
T ss_pred ccc-CCc--------ccc---CCCCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEE
Confidence 100 000 000 0113456899999998754432 367788776421 111 3589999
Q ss_pred EECCCC--cchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhh
Q 010136 278 IANAID--LADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLME 322 (517)
Q Consensus 278 ian~~~--~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~ 322 (517)
++|... -...+++|+.+| | ..+.++.++.+++..|+...+.+
T Consensus 1390 A~Npp~~gGR~~l~~rllRr-f--~vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1390 ACNPPTDPGRIPMSERFTRH-A--AILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp EECCTTSTTCCCCCHHHHTT-E--EEEECCCCTTTHHHHHHHHHHHH
T ss_pred ecCCCccCCCccCChhhhhe-e--eEEEeCCCCHHHHHHHHHHHHHH
Confidence 999642 113578999998 7 78999999999999999988864
No 91
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.83 E-value=5.1e-07 Score=105.29 Aligned_cols=308 Identities=11% Similarity=0.056 Sum_probs=164.4
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCH--HH
Q 010136 123 PSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNT--SE 200 (517)
Q Consensus 123 p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~--~~ 200 (517)
+..++||++++++|.+.|... ......+.|+|++|+|||++|+.++....... ..+. -.+++++....... ..
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~--~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~~ 197 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKL--NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLE--GCFS-GGVHWVSIGKQDKSGLLM 197 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTT--TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHT--TTST-TCEEEEECCSCCHHHHHH
T ss_pred CceeccHHHHHHHHHHHHhhc--cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHH--hhCC-CeEEEEEECCcCchHHHH
Confidence 357999999999999998642 23456788999999999999999886643211 1111 13567777664332 33
Q ss_pred HHHHHHHHhCCCCCCCC-CCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEE
Q 010136 201 IFSKILLKLQPRKKLNG-STSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIA 279 (517)
Q Consensus 201 i~~~i~~~l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ia 279 (517)
.+..+...+........ .....+.+...+... ...+.++.+||||+++.. ..+.. . .+ ...||.+|
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~LlvlDd~~~~-----~~~~~---~--~~--~~~ilvTt 264 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVL-MLRKHPRSLLILDDVWDP-----WVLKA---F--DN--QCQILLTT 264 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHH-TSSSSCSCEEEEESCCCH-----HHHTT---T--CS--SCEEEEEE
T ss_pred HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHH-HhccCCCEEEEEecCCCH-----HHHHh---h--cC--CCEEEEEc
Confidence 46667777765432211 112244444444422 223345789999999864 12211 1 12 23455556
Q ss_pred CCCCcchhhcccccccCCCceEEEeCC-CCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 010136 280 NAIDLADRFLPRLQSMNCKPLVVTFRA-YSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVCRSAI 358 (517)
Q Consensus 280 n~~~~~~~l~~~l~sr~~~~~~i~f~p-~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll~~A~ 358 (517)
....... .... ....+.+.+ ++.++-.+++..+.... ...+. +....| ....|.+..||.++-..+
T Consensus 265 R~~~~~~----~~~~---~~~~~~~~~~l~~~~a~~l~~~~~~~~-~~~~~-~~~~~i----~~~~~glPLal~~~~~~l 331 (1249)
T 3sfz_A 265 RDKSVTD----SVMG---PKHVVPVESGLGREKGLEILSLFVNMK-KEDLP-AEAHSI----IKECKGSPLVVSLIGALL 331 (1249)
T ss_dssp SSTTTTT----TCCS---CBCCEECCSSCCHHHHHHHHHHHHTSC-STTCC-THHHHH----HHHTTTCHHHHHHHHHHH
T ss_pred CCHHHHH----hhcC---CceEEEecCCCCHHHHHHHHHHhhCCC-hhhCc-HHHHHH----HHHhCCCHHHHHHHHHHh
Confidence 6432211 1111 224677775 99999999998776421 11222 233333 345677777776653322
Q ss_pred HHHHH---HHHhhhhccccccccccchhhhhhhhhhccCccccHHHHHHHHHHhccChhHHHhccCCHHHHHHHHHHHHH
Q 010136 359 EILEA---EMRESVSKMNSASAEQGLFDQQAASAFEFFNSQVRVDHMAVALSNTFKSPVVDTIKSLPQHQQILLCSAVKF 435 (517)
Q Consensus 359 ~~a~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~~~~~~~i~~L~~~~k~iL~al~~l 435 (517)
.--.. +......... ...+.. ...-..+.+..++.. .+..||.++|.++.-+..+
T Consensus 332 ~~~~~~~~~~l~~l~~~~----~~~~~~----------~~~~~~~~~~~~l~~--------s~~~L~~~~~~~~~~l~~f 389 (1249)
T 3sfz_A 332 RDFPNRWAYYLRQLQNKQ----FKRIRK----------SSSYDYEALDEAMSI--------SVEMLREDIKDYYTDLSIL 389 (1249)
T ss_dssp HHSSSCHHHHHHHHHSCC----CCCSSC----------TTCTTHHHHHHHHHH--------HHHTSCTTTHHHHHHGGGS
T ss_pred hcChhHHHHHHHHHhhhh----hhhccc----------ccccchHHHHHHHHH--------HHHhCCHHHHHHHHHhCcc
Confidence 10000 0000000000 000000 001122334444433 4567888888777644433
Q ss_pred HhcCCCCccHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhcCceeeccCCceeEEEe
Q 010136 436 FRGGKKDMTVGELNKSYMNICKTSLIPPVGTLEFFSMCRVLHDQGVLKVGRDDKLKRVTL 495 (517)
Q Consensus 436 ~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~L~~~glI~~~~~~~~~~~~l 495 (517)
. +...+....+.... .....+..++++.|.+.+||.....|+...|++
T Consensus 390 ~--~~~~i~~~~~~~~~----------~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~ 437 (1249)
T 3sfz_A 390 Q--KDVKVPTKVLCVLW----------DLETEEVEDILQEFVNKSLLFCNRNGKSFCYYL 437 (1249)
T ss_dssp C--TTCCEEHHHHHHHH----------TCCHHHHHHHHHHHHHTTSCEEEESSSSEEEEC
T ss_pred C--CCCeeCHHHHHHHh----------CCCHHHHHHHHHHHHhccceEEecCCCceEEEe
Confidence 2 22345555553321 223567889999999999998765565445555
No 92
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.77 E-value=2.6e-09 Score=93.42 Aligned_cols=103 Identities=19% Similarity=0.219 Sum_probs=68.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQN 227 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~ 227 (517)
.+..++|+||+|+|||++++.++..+.. .| ..++++++..+... .
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~----~g---~~~~~~~~~~~~~~----------------------------~ 79 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE----AG---KNAAYIDAASMPLT----------------------------D 79 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT----TT---CCEEEEETTTSCCC----------------------------G
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh----cC---CcEEEEcHHHhhHH----------------------------H
Confidence 5678999999999999999999988753 12 35788988765332 0
Q ss_pred HHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEECC-CCcchhhccccccc
Q 010136 228 LYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIANA-IDLADRFLPRLQSM 295 (517)
Q Consensus 228 ~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian~-~~~~~~l~~~l~sr 295 (517)
++ ..+.+|+|||++.+....++.|+.+++.....+..+++| ++|. ....... +++.||
T Consensus 80 ~~--------~~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iii-ts~~~p~~l~~~-~~L~SR 138 (149)
T 2kjq_A 80 AA--------FEAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLL-GSEYTPQQLVIR-EDLRTR 138 (149)
T ss_dssp GG--------GGCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEE-EESSCTTTSSCC-HHHHHH
T ss_pred HH--------hCCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEE-ECCCCHHHcccc-HHHHHH
Confidence 01 135689999999986655777888876532222222333 4663 2222223 788888
No 93
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.76 E-value=1.9e-07 Score=99.50 Aligned_cols=196 Identities=14% Similarity=0.114 Sum_probs=117.6
Q ss_pred CCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHH----HHHHHHHhcCCCCceEEEEeCCCCC--CHHH
Q 010136 127 VCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQH----YLVDWAKEAGLQQPEVFSINCTSLT--NTSE 200 (517)
Q Consensus 127 ~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~----~l~~~~~~~~~~~~~~v~vn~~~~~--s~~~ 200 (517)
+||++++++|.++|... .......+.|+|++|+|||++|+.+++ .+.. .+. ..++++..... +...
T Consensus 131 ~GR~~~~~~l~~~L~~~-~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~-----~F~--~~~wv~vs~~~~~~~~~ 202 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM-CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGI-----NYD--SIVWLKDSGTAPKSTFD 202 (549)
T ss_dssp CCCHHHHHHHHHHHHHH-TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTT-----TBS--EEEEEECCCCSTTHHHH
T ss_pred CCchHHHHHHHHHHhcc-cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhc-----cCC--cEEEEEECCCCCCCHHH
Confidence 59999999999998653 123456788999999999999999986 2211 111 46777766653 5788
Q ss_pred HHHHHHHHhCCCCC---CCC-CCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEE
Q 010136 201 IFSKILLKLQPRKK---LNG-STSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILI 276 (517)
Q Consensus 201 i~~~i~~~l~~~~~---~~~-~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI 276 (517)
++..|+.+++.... ... .......+...+.... ..++.++||||+++.... + .|...++++ ||
T Consensus 203 ~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L--~~~kr~LlVLDdv~~~~~-----~----~~~~~~gs~--il 269 (549)
T 2a5y_B 203 LFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNAL--IDRPNTLFVFDDVVQEET-----I----RWAQELRLR--CL 269 (549)
T ss_dssp HHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHH--TTSTTEEEEEEEECCHHH-----H----HHHHHTTCE--EE
T ss_pred HHHHHHHHHhcCcccccccccccccHHHHHHHHHHHH--cCCCcEEEEEECCCCchh-----h----cccccCCCE--EE
Confidence 99999999976522 111 1111223333333211 122368999999987521 1 122113333 44
Q ss_pred EEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhCCHHHHHHHH
Q 010136 277 GIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASGDMRKALSVC 354 (517)
Q Consensus 277 ~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~Gd~R~al~ll 354 (517)
.+|.... +..... .....+.+.+++.++..+++..+...- . .+.....+++.+....|....|+.++
T Consensus 270 vTTR~~~----v~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~---~-~~~~~~~~~~~I~~~c~GlPLAl~~~ 336 (549)
T 2a5y_B 270 VTTRDVE----ISNAAS---QTCEFIEVTSLEIDECYDFLEAYGMPM---P-VGEKEEDVLNKTIELSSGNPATLMMF 336 (549)
T ss_dssp EEESBGG----GGGGCC---SCEEEEECCCCCHHHHHHHHHHTSCCC---C---CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred EEcCCHH----HHHHcC---CCCeEEECCCCCHHHHHHHHHHHhcCC---C-CchhHHHHHHHHHHHhCCChHHHHHH
Confidence 4455321 111111 122468999999999999999764221 1 12344555555666777777888766
No 94
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.75 E-value=1.7e-08 Score=92.89 Aligned_cols=118 Identities=18% Similarity=0.225 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCC
Q 010136 133 QKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPR 212 (517)
Q Consensus 133 ~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~ 212 (517)
++.+..++........+.+++|+||||||||+++++++..+... + ..+++++|. .++..+...+..
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~----~---~~~~~~~~~------~~~~~~~~~~~~- 103 (202)
T 2w58_A 38 IRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR----N---VSSLIVYVP------ELFRELKHSLQD- 103 (202)
T ss_dssp HHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT----T---CCEEEEEHH------HHHHHHHHC----
T ss_pred HHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc----C---CeEEEEEhH------HHHHHHHHHhcc-
Confidence 33444444432221123789999999999999999999887531 2 357788774 233333332211
Q ss_pred CCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhccc--Cch-HHHHHhccCCCCCCcEEEEEEECC
Q 010136 213 KKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITR--DRA-VLHDLFMLTTFPFSRFILIGIANA 281 (517)
Q Consensus 213 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~--~~~-~L~~l~~~~~~~~~~v~lI~ian~ 281 (517)
+.. .. +...+. ...+|||||++..... .+. .|+.+++..... ...+|.++|.
T Consensus 104 -----~~~-~~-~~~~~~--------~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~--~~~~i~tsn~ 158 (202)
T 2w58_A 104 -----QTM-NE-KLDYIK--------KVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFE--NLPTFFTSNF 158 (202)
T ss_dssp -----CCC-HH-HHHHHH--------HSSEEEEEEECCC---CCGGGTTHHHHHHHHHHT--TCCEEEEESS
T ss_pred -----chH-HH-HHHHhc--------CCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhC--CCCEEEEcCC
Confidence 111 22 222222 1248999999775433 244 455565442111 2235666774
No 95
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.71 E-value=6.1e-09 Score=105.90 Aligned_cols=223 Identities=14% Similarity=0.006 Sum_probs=132.1
Q ss_pred CCCcHHHHHHHHHHHHHhhccCC-----CCeEEEEcCCCCcHHHHHHHH-HHHHHHHHHhcCCCCceEEEEeCCCCCCHH
Q 010136 126 IVCREDEQKKVLEFCKKNLEEEK-----AGSLYVCGCPGTGKSLSMEKV-QHYLVDWAKEAGLQQPEVFSINCTSLTNTS 199 (517)
Q Consensus 126 l~gRe~e~~~l~~~L~~~l~~~~-----~~~lli~G~pGtGKT~l~~~v-~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~ 199 (517)
++|.+.....|.-. +-++. .-++||.|+||| ||.+++++ .+.+. ..+|+.+.. .+..
T Consensus 215 I~G~e~vK~aLll~----L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~p-----------R~~ft~g~~-ss~~ 277 (506)
T 3f8t_A 215 LPGAEEVGKMLALQ----LFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAP-----------RGVYVDLRR-TELT 277 (506)
T ss_dssp STTCHHHHHHHHHH----HTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCS-----------SEEEEEGGG-CCHH
T ss_pred cCCCHHHHHHHHHH----HcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhCC-----------CeEEecCCC-CCcc
Confidence 89998754333333 33221 228999999999 99999999 55431 344554432 2222
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCC------CCCCcE
Q 010136 200 EIFSKILLKLQPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTT------FPFSRF 273 (517)
Q Consensus 200 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~------~~~~~v 273 (517)
.+... +... .| ...+ --.++ . +. .-++|||||+.+..+.|..|.+.++..+ .-..++
T Consensus 278 gLt~s----~r~~----tG-~~~~-~G~l~----L-Ad--gGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lparf 340 (506)
T 3f8t_A 278 DLTAV----LKED----RG-WALR-AGAAV----L-AD--GGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARC 340 (506)
T ss_dssp HHSEE----EEES----SS-EEEE-ECHHH----H-TT--TSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEECCC
T ss_pred CceEE----EEcC----CC-cccC-CCeeE----E-cC--CCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCCCe
Confidence 22111 1000 01 0000 00011 1 11 2489999999998888888888876521 123578
Q ss_pred EEEEEECCCCcch--------hhcccccccCCCceEEEeC-------------CCCHHHHHHHHHHHHhhhccCCCChhH
Q 010136 274 ILIGIANAIDLAD--------RFLPRLQSMNCKPLVVTFR-------------AYSKDQIIRILQERLMELSYIVFQPQA 332 (517)
Q Consensus 274 ~lI~ian~~~~~~--------~l~~~l~sr~~~~~~i~f~-------------p~~~~e~~~IL~~rl~~~~~~~~~~~a 332 (517)
.||+++|.....+ .+.+.+.+| |....+... .++.+++.+++...-.......+++++
T Consensus 341 ~VIAA~NP~~~yd~~~s~~~~~Lp~alLDR-FDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea 419 (506)
T 3f8t_A 341 AVLAAINPGEQWPSDPPIARIDLDQDFLSH-FDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEA 419 (506)
T ss_dssp EEEEEECCCC--CCSCGGGGCCSCHHHHTT-CSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHH
T ss_pred EEEEEeCcccccCCCCCccccCCChHHhhh-eeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHH
Confidence 9999999865111 455677788 633222222 234455555444222111135788998
Q ss_pred HHHHHHHHHHH---------------hCCHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhccCccc
Q 010136 333 LELCARKVAAA---------------SGDMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQAASAFEFFNSQV 397 (517)
Q Consensus 333 i~~ia~~~~~~---------------~Gd~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 397 (517)
.+++.+.+... .-.+|..+.+++.|-..|..+++. .|
T Consensus 420 ~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~----------------------------~V 471 (506)
T 3f8t_A 420 RKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSD----------------------------DV 471 (506)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCS----------------------------EE
T ss_pred HHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcC----------------------------CC
Confidence 88887765431 125788888999999889988887 89
Q ss_pred cHHHHHHHHHHhcc
Q 010136 398 RVDHMAVALSNTFK 411 (517)
Q Consensus 398 t~~~v~~a~~~~~~ 411 (517)
+.+||..|+.-+..
T Consensus 472 ~~eDV~~Ai~L~~~ 485 (506)
T 3f8t_A 472 EPEDVDIAAELVDW 485 (506)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999876543
No 96
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.70 E-value=1.3e-08 Score=91.83 Aligned_cols=122 Identities=12% Similarity=0.138 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHh
Q 010136 130 EDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKL 209 (517)
Q Consensus 130 e~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l 209 (517)
...++.+..++... ....+.+++|+||||||||++++.++..+... .|. .++++++ ..++..+...+
T Consensus 20 ~~~~~~~~~~~~~~-~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~---~g~---~~~~~~~------~~~~~~~~~~~ 86 (180)
T 3ec2_A 20 NRALLTIRVFVHNF-NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEK---KGI---RGYFFDT------KDLIFRLKHLM 86 (180)
T ss_dssp HHHHHHHHHHHHSC-CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHH---SCC---CCCEEEH------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cccCCCEEEEECCCCCCHHHHHHHHHHHHHHH---cCC---eEEEEEH------HHHHHHHHHHh
Confidence 33344444444332 22346789999999999999999999887522 232 3455554 33333333333
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchh--cccCchHHHHHhccCCCCCCcEEEEEEECCC
Q 010136 210 QPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYL--ITRDRAVLHDLFMLTTFPFSRFILIGIANAI 282 (517)
Q Consensus 210 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L--~~~~~~~L~~l~~~~~~~~~~v~lI~ian~~ 282 (517)
.... . .. +...+. .+.+|||||++.. ....+..|+.+++..... ...+|.+||..
T Consensus 87 ~~~~-----~--~~-~~~~~~--------~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~--~~~ii~tsn~~ 143 (180)
T 3ec2_A 87 DEGK-----D--TK-FLKTVL--------NSPVLVLDDLGSERLSDWQRELISYIITYRYNN--LKSTIITTNYS 143 (180)
T ss_dssp HHTC-----C--SH-HHHHHH--------TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHT--TCEEEEECCCC
T ss_pred cCch-----H--HH-HHHHhc--------CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHc--CCCEEEEcCCC
Confidence 1110 0 11 222222 3569999999853 233446677777553211 23455667753
No 97
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.38 E-value=1.1e-05 Score=98.78 Aligned_cols=143 Identities=13% Similarity=0.020 Sum_probs=90.1
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCC
Q 010136 134 KKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRK 213 (517)
Q Consensus 134 ~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~ 213 (517)
++....+..++. ...++++.||+|||||.+++.+++.++. .++.+||....+...+
T Consensus 632 dr~~~tl~~Al~--~~~~~~l~GpaGtGKTe~vk~LA~~lg~----------~~v~~nc~e~ld~~~l------------ 687 (2695)
T 4akg_A 632 LIGFATLTDSLH--QKYGGCFFGPAGTGKTETVKAFGQNLGR----------VVVVFNCDDSFDYQVL------------ 687 (2695)
T ss_dssp HHHHHHHHHHHH--TTCEEEEECCTTSCHHHHHHHHHHTTTC----------CCEEEETTSSCCHHHH------------
T ss_pred HHHHHHHHHHHH--hCCCCcccCCCCCCcHHHHHHHHHHhCC----------cEEEEECCCCCChhHh------------
Confidence 444455555554 2356788999999999999999998863 6889999998776553
Q ss_pred CCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHh----cc----------C---CCCCCcEEEE
Q 010136 214 KLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLF----ML----------T---TFPFSRFILI 276 (517)
Q Consensus 214 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~----~~----------~---~~~~~~v~lI 276 (517)
...+..+.. ....+++||++.+......++...+ +. . -.....+.++
T Consensus 688 --------g~~~~g~~~--------~Gaw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vf 751 (2695)
T 4akg_A 688 --------SRLLVGITQ--------IGAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVF 751 (2695)
T ss_dssp --------HHHHHHHHH--------HTCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEE
T ss_pred --------hHHHHHHHh--------cCCEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEE
Confidence 111122221 1368999999998765444432211 10 0 0112356667
Q ss_pred EEECCCC-cchhhcccccccCCCceEEEeCCCCHHHHHHHHHHH
Q 010136 277 GIANAID-LADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQER 319 (517)
Q Consensus 277 ~ian~~~-~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~r 319 (517)
.+.|.-. -...+...++++ | +.+.+..++.+.+.+|+...
T Consensus 752 iT~NPgy~g~~eLP~~Lk~~-F--r~v~m~~Pd~~~i~ei~l~s 792 (2695)
T 4akg_A 752 ITLNPGYNGRSELPENLKKS-F--REFSMKSPQSGTIAEMILQI 792 (2695)
T ss_dssp EEECCCSSSSCCCCHHHHTT-E--EEEECCCCCHHHHHHHHHHH
T ss_pred EEeCCCccCcccccHHHHhh-e--EEEEeeCCCHHHHHHHHHHh
Confidence 7677421 011244567776 7 68999999999999987643
No 98
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.36 E-value=1.1e-06 Score=107.85 Aligned_cols=163 Identities=15% Similarity=0.244 Sum_probs=105.9
Q ss_pred HHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCC
Q 010136 135 KVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKK 214 (517)
Q Consensus 135 ~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~ 214 (517)
+...++...+. ...+++|+||||||||+++..++..+. ...++.+|++..++...+...+-..+.....
T Consensus 1292 R~~~ll~~ll~--~~~pvLL~GptGtGKT~li~~~L~~l~---------~~~~~~infS~~Tta~~l~~~~e~~~e~~~~ 1360 (3245)
T 3vkg_A 1292 RHVDVLHAWLS--EHRPLILCGPPGSGKTMTLTSTLRAFP---------DFEVVSLNFSSATTPELLLKTFDHHCEYKRT 1360 (3245)
T ss_dssp HHHHHHHHHHH--TTCCCEEESSTTSSHHHHHHHHGGGCT---------TEEEEEECCCTTCCHHHHHHHHHHHEEEEEC
T ss_pred HHHHHHHHHHH--CCCcEEEECCCCCCHHHHHHHHHHhCC---------CCceEEEEeeCCCCHHHHHHHHhhcceEEec
Confidence 34445555554 457899999999999999877665432 2468899999999888776655443311000
Q ss_pred CCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhccc---Cc---hHHHHHhccC---CC------CCCcEEEEEEE
Q 010136 215 LNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITR---DR---AVLHDLFMLT---TF------PFSRFILIGIA 279 (517)
Q Consensus 215 ~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~---~~---~~L~~l~~~~---~~------~~~~v~lI~ia 279 (517)
...|. ++. ....++..|+||||++.-... .| +.|.++++.. .. .-..+.+|++.
T Consensus 1361 ~~~G~--------~~~---p~~~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaam 1429 (3245)
T 3vkg_A 1361 PSGET--------VLR---PTQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGAC 1429 (3245)
T ss_dssp TTSCE--------EEE---ESSTTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEE
T ss_pred cCCCc--------ccC---CCcCCceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEc
Confidence 00000 000 111356789999999865433 12 5677777641 10 11467899998
Q ss_pred CCCC--cchhhcccccccCCCceEEEeCCCCHHHHHHHHHHHHhh
Q 010136 280 NAID--LADRFLPRLQSMNCKPLVVTFRAYSKDQIIRILQERLME 322 (517)
Q Consensus 280 n~~~--~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~IL~~rl~~ 322 (517)
|... -...+.+|+.++ | ..+.++.++.+++..|....+..
T Consensus 1430 nPp~~gGr~~l~~Rf~r~-F--~vi~i~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1430 NPPTDAGRVQLTHRFLRH-A--PILLVDFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp CCTTSTTCCCCCHHHHTT-C--CEEECCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHhh-c--eEEEeCCCCHHHHHHHHHHHHHH
Confidence 8652 223477899888 7 68999999999999998766653
No 99
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.36 E-value=2.4e-07 Score=91.03 Aligned_cols=54 Identities=22% Similarity=0.357 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHH-HHHHhcCCCCceEEEEeCC
Q 010136 132 EQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLV-DWAKEAGLQQPEVFSINCT 193 (517)
Q Consensus 132 e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~-~~~~~~~~~~~~~v~vn~~ 193 (517)
.++.+..++...-. ....+++|+||||||||+++.+++..+. . .+ ..++++++.
T Consensus 136 ~~~~~~~~i~~~~~-~~~~~lll~G~~GtGKT~La~aia~~~~~~----~g---~~v~~~~~~ 190 (308)
T 2qgz_A 136 AFSAILDFVEQYPS-AEQKGLYLYGDMGIGKSYLLAAMAHELSEK----KG---VSTTLLHFP 190 (308)
T ss_dssp HHHHHHHHHHHCSC-SSCCEEEEECSTTSSHHHHHHHHHHHHHHH----SC---CCEEEEEHH
T ss_pred HHHHHHHHHHhccc-cCCceEEEECCCCCCHHHHHHHHHHHHHHh----cC---CcEEEEEHH
Confidence 33344444444211 1357999999999999999999999876 3 22 357777764
No 100
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.34 E-value=3.8e-07 Score=82.74 Aligned_cols=37 Identities=30% Similarity=0.351 Sum_probs=27.1
Q ss_pred HHHHHhhccC-CCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 138 EFCKKNLEEE-KAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 138 ~~L~~~l~~~-~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
..|...+.+. ...+++|+||||||||+++.++++.+.
T Consensus 46 ~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 46 GALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3344444432 235799999999999999999988763
No 101
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.27 E-value=3.2e-06 Score=80.24 Aligned_cols=134 Identities=13% Similarity=0.058 Sum_probs=79.5
Q ss_pred HHHHHHHHhhccC-C-CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCC
Q 010136 135 KVLEFCKKNLEEE-K-AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPR 212 (517)
Q Consensus 135 ~l~~~L~~~l~~~-~-~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~ 212 (517)
.+..++..++.+. . .++++|+||||||||+++.++++.+. -+-.+|....
T Consensus 88 ~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~-----------l~G~vn~~~~----------------- 139 (267)
T 1u0j_A 88 YAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVP-----------FYGCVNWTNE----------------- 139 (267)
T ss_dssp HHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSS-----------CEEECCTTCS-----------------
T ss_pred HHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhc-----------ccceeecccc-----------------
Confidence 3556677777764 2 45799999999999999999987632 1222332110
Q ss_pred CCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccC----C-C-----CCCcEEEEEEECCC
Q 010136 213 KKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLT----T-F-----PFSRFILIGIANAI 282 (517)
Q Consensus 213 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~----~-~-----~~~~v~lI~ian~~ 282 (517)
.. .|. ......|++.||... ....++.+..+++-. . . .-...-+|.++|..
T Consensus 140 -----~f--------~l~-----~~~~k~i~l~Ee~~~-~~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~ 200 (267)
T 1u0j_A 140 -----NF--------PFN-----DCVDKMVIWWEEGKM-TAKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTN 200 (267)
T ss_dssp -----SC--------TTG-----GGSSCSEEEECSCCE-ETTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSC
T ss_pred -----cc--------ccc-----cccccEEEEeccccc-hhHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCC
Confidence 00 011 111224566666654 445567788888621 0 0 00122345557852
Q ss_pred Ccc--------hhhcccccccCCCceEEEeC--------CCCHHHHHHHHHH
Q 010136 283 DLA--------DRFLPRLQSMNCKPLVVTFR--------AYSKDQIIRILQE 318 (517)
Q Consensus 283 ~~~--------~~l~~~l~sr~~~~~~i~f~--------p~~~~e~~~IL~~ 318 (517)
-.. +...+.|+|| + ..+.|. +++.++....+.-
T Consensus 201 i~~~~~g~~~s~~~~~~L~sR-~--~~f~F~~~~p~~~~~lt~~~~~~f~~w 249 (267)
T 1u0j_A 201 MCAVIDGNSTTFEHQQPLQDR-M--FKFELTRRLDHDFGKVTKQEVKDFFRW 249 (267)
T ss_dssp TTCEEETTEEECTTHHHHHTT-E--EEEECCSCCCTTSCCCCHHHHHHHHHH
T ss_pred cccccccCccchhhhHHHhhh-E--EEEECCCcCCcccCCCCHHHHHHHHHH
Confidence 111 2345678888 6 688998 8999999999883
No 102
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=98.17 E-value=3.4e-05 Score=85.85 Aligned_cols=169 Identities=12% Similarity=0.090 Sum_probs=98.9
Q ss_pred CCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHH--HHHHHHhcCCCCceEEEEeCCCCCCHHHHH
Q 010136 125 TIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHY--LVDWAKEAGLQQPEVFSINCTSLTNTSEIF 202 (517)
Q Consensus 125 ~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~--l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~ 202 (517)
..+||+.++++|.+.|... ...+.+.|+|++|+|||++|+.+++. +..... ..+++++.....+...++
T Consensus 129 ~~VGRe~eLeeL~elL~~~---d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd------~gV~WVsVs~~~d~~~IL 199 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLEL---RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD------FKIFWLNLKNCNSPETVL 199 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHC---CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHS------SCEEEEECCCSSSHHHHH
T ss_pred CCCCcHHHHHHHHHHHhcc---CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCC------CcEEEEEeCCCCCHHHHH
Confidence 3599999999999998752 23678999999999999999999863 332221 237888887777777777
Q ss_pred HHHHHHhCCC---CCCCCC--CCH---HHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEE
Q 010136 203 SKILLKLQPR---KKLNGS--TSP---LQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFI 274 (517)
Q Consensus 203 ~~i~~~l~~~---~~~~~~--~~~---~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~ 274 (517)
..|...+... ...... ... .+.+...+.........++++||||+++.. +.+..+- ++++
T Consensus 200 ~~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~-----eqLe~f~-----pGSR-- 267 (1221)
T 1vt4_I 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA-----KAWNAFN-----LSCK-- 267 (1221)
T ss_dssp HHHHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH-----HHHHHHH-----SSCC--
T ss_pred HHHHHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH-----HHHHhhC-----CCeE--
Confidence 7777654211 110000 111 122222222111112456799999999872 3333331 3344
Q ss_pred EEEEECCCCcchhhcccccccCCCceEEEeC----CCCHHHHHHHHHHHH
Q 010136 275 LIGIANAIDLADRFLPRLQSMNCKPLVVTFR----AYSKDQIIRILQERL 320 (517)
Q Consensus 275 lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~----p~~~~e~~~IL~~rl 320 (517)
||.+|...... ..+... ....+.++ +++.+|..+++..++
T Consensus 268 ILVTTRd~~Va----~~l~g~--~vy~LeL~d~dL~LS~eEA~eLF~~~~ 311 (1221)
T 1vt4_I 268 ILLTTRFKQVT----DFLSAA--TTTHISLDHHSMTLTPDEVKSLLLKYL 311 (1221)
T ss_dssp EEEECSCSHHH----HHHHHH--SSCEEEECSSSSCCCHHHHHHHHHHHH
T ss_pred EEEeccChHHH----HhcCCC--eEEEecCccccCCcCHHHHHHHHHHHc
Confidence 33335532211 111111 11245555 799999999998874
No 103
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.06 E-value=2.3e-06 Score=78.23 Aligned_cols=140 Identities=13% Similarity=0.136 Sum_probs=66.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHHHH-hcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCC--CCCCCCC-HHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHYLVDWAK-EAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRK--KLNGSTS-PLQYL 225 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~l~~~~~-~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~--~~~~~~~-~~~~l 225 (517)
-..+++|+||+|||+.+...+........ ..|.. .+.+.|+..+..... + .+.... ....... ....+
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r--~v~~~~~~gL~~~~~-~-----~~~~k~~~~~~~~~~~~~~~~ 77 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIR--RKVFTNIKGLKIPHT-Y-----IETDAKKLPKSTDEQLSAHDM 77 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCC--CCEEECCTTBCSCCE-E-----EECCTTTCSSCCSSCEEGGGH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCce--EEEEecCCCcccccc-c-----cchhhhhccccCcccccHHHH
Confidence 36789999999999998775443210000 12211 234555554321110 0 000000 0000000 01223
Q ss_pred HHHHHhhhccCCCceEEEEEeCcchhcccC---chHHHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEE
Q 010136 226 QNLYSQKLHSSVMKMMLIIADELDYLITRD---RAVLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVV 302 (517)
Q Consensus 226 ~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~---~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i 302 (517)
.+.+. ...++..||||||++.+.... .+.+.-+..+.......+.+|.+++. +..++..++.| + ...+
T Consensus 78 ~~~~~----~~~~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~---~~~l~~~lr~r-i-~~~~ 148 (199)
T 2r2a_A 78 YEWIK----KPENIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG---PKLLDQNLRTL-V-RKHY 148 (199)
T ss_dssp HHHTT----SGGGTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC---GGGBCHHHHTT-E-EEEE
T ss_pred HHHhh----ccccCceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC---HHHHhHHHHHH-h-heEE
Confidence 33321 013346899999999995322 22222222222233445566777885 55666677776 4 2356
Q ss_pred EeCC
Q 010136 303 TFRA 306 (517)
Q Consensus 303 ~f~p 306 (517)
+|.+
T Consensus 149 ~l~~ 152 (199)
T 2r2a_A 149 HIAS 152 (199)
T ss_dssp EEEE
T ss_pred EEcC
Confidence 6655
No 104
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.04 E-value=1.8e-05 Score=82.13 Aligned_cols=60 Identities=20% Similarity=0.227 Sum_probs=39.0
Q ss_pred hhcCcCCCCCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 115 EALHVSTAPSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 115 ~~l~~~~~p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
..|.+.|.|-.+-+..++++.....+...+..+. ++++|.|+||||||+++..++..+..
T Consensus 12 ~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~ 71 (459)
T 3upu_A 12 SGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIS 71 (459)
T ss_dssp ---------CCSSCCCHHHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCccccCCCccccCCHHHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 3455667777777666666666666555555433 49999999999999999999988865
No 105
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.82 E-value=0.0019 Score=79.99 Aligned_cols=126 Identities=13% Similarity=0.098 Sum_probs=79.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNLYS 230 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~~~ 230 (517)
+..+.||+|||||.+++.+++.++. .++.+||....+...+ .++|.
T Consensus 606 gg~~~GPaGtGKTet~k~La~~lgr----------~~~vfnC~~~~d~~~~------------------------g~i~~ 651 (3245)
T 3vkg_A 606 GGNPFGPAGTGKTETVKALGSQLGR----------FVLVFCCDEGFDLQAM------------------------SRIFV 651 (3245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTC----------CEEEEECSSCCCHHHH------------------------HHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhCC----------eEEEEeCCCCCCHHHH------------------------HHHHh
Confidence 4468899999999999999998873 5788899887654432 22222
Q ss_pred hhhccCCCceEEEEEeCcchhcccCchHHHHHhc--------c---CCCC-------CCcEEEEEEECCCCcc--hhhcc
Q 010136 231 QKLHSSVMKMMLIIADELDYLITRDRAVLHDLFM--------L---TTFP-------FSRFILIGIANAIDLA--DRFLP 290 (517)
Q Consensus 231 ~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~--------~---~~~~-------~~~v~lI~ian~~~~~--~~l~~ 290 (517)
... . .....++|||+.+......++.+.+. . .... +..+.++.+.|. .+. ..+..
T Consensus 652 G~~---~-~GaW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNp-gY~gr~eLP~ 726 (3245)
T 3vkg_A 652 GLC---Q-CGAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNP-GYAGRSNLPD 726 (3245)
T ss_dssp HHH---H-HTCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCC-CGGGCCCSCH
T ss_pred hHh---h-cCcEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCC-CccCcccChH
Confidence 100 1 12467899999986543333322111 0 0111 234566665664 222 23556
Q ss_pred cccccCCCceEEEeCCCCHHHHHHHHHH
Q 010136 291 RLQSMNCKPLVVTFRAYSKDQIIRILQE 318 (517)
Q Consensus 291 ~l~sr~~~~~~i~f~p~~~~e~~~IL~~ 318 (517)
.++++ | +.+.+..++.+.+.+|+..
T Consensus 727 nLk~l-F--r~v~m~~Pd~~~i~ei~L~ 751 (3245)
T 3vkg_A 727 NLKKL-F--RSMAMIKPDREMIAQVMLY 751 (3245)
T ss_dssp HHHTT-E--EEEECCSCCHHHHHHHHHH
T ss_pred HHHhh-c--EEEEEeCCCHHHHHHHHHH
Confidence 77777 7 6799999999999998763
No 106
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.79 E-value=1.1e-05 Score=74.84 Aligned_cols=93 Identities=13% Similarity=-0.012 Sum_probs=50.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQN 227 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~ 227 (517)
.+..++++|++|+||||++..++..+... + ..+++++...... ....++..++.......-.. ...+..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~----g---~kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~-~~~i~~ 79 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYA----D---VKYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVES-APEILN 79 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHT----T---CCEEEEEECCCGG---GCSSCCCCCCCSSCCEEESS-THHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhc----C---CEEEEEEeccCch---HHHHHHHhcCCCccccccCC-HHHHHH
Confidence 45678899999999999999988776542 2 2466665443211 11123333321111000011 233444
Q ss_pred HHHhhhccCCCceEEEEEeCcchhcc
Q 010136 228 LYSQKLHSSVMKMMLIIADELDYLIT 253 (517)
Q Consensus 228 ~~~~~~~~~~~~~~vI~iDEiD~L~~ 253 (517)
.+.+.. ....+.+|+|||++.|..
T Consensus 80 ~i~~~~--~~~~~dvViIDEaQ~l~~ 103 (223)
T 2b8t_A 80 YIMSNS--FNDETKVIGIDEVQFFDD 103 (223)
T ss_dssp HHHSTT--SCTTCCEEEECSGGGSCT
T ss_pred HHHHHh--hCCCCCEEEEecCccCcH
Confidence 443211 234567999999998754
No 107
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.77 E-value=2.8e-05 Score=75.68 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~ 172 (517)
+..++|+||||||||+++..++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 446799999999999999999876
No 108
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.58 E-value=0.00027 Score=63.25 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.+.|.||+|+||||+++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998874
No 109
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.58 E-value=0.00032 Score=74.62 Aligned_cols=104 Identities=22% Similarity=0.240 Sum_probs=58.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQNL 228 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~ 228 (517)
.+.++|.|+||||||+++..++..+... + ..++.+ +... .....+.+.++.. ...+..+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~----g---~~Vl~~-ApT~----~Aa~~L~e~~~~~---------a~Tih~l 262 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESL----G---LEVGLC-APTG----KAARRLGEVTGRT---------ASTVHRL 262 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHT----T---CCEEEE-ESSH----HHHHHHHHHHTSC---------EEEHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc----C---CeEEEe-cCcH----HHHHHhHhhhccc---------HHHHHHH
Confidence 5789999999999999999998877642 2 234433 3321 2222333333211 0112222
Q ss_pred HHhh------hccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEE
Q 010136 229 YSQK------LHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIG 277 (517)
Q Consensus 229 ~~~~------~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ 277 (517)
+... .........+|||||+..+. ...+..|+.... .+.+++++|
T Consensus 263 l~~~~~~~~~~~~~~~~~dvlIIDEasml~---~~~~~~Ll~~~~-~~~~lilvG 313 (574)
T 3e1s_A 263 LGYGPQGFRHNHLEPAPYDLLIVDEVSMMG---DALMLSLLAAVP-PGARVLLVG 313 (574)
T ss_dssp TTEETTEESCSSSSCCSCSEEEECCGGGCC---HHHHHHHHTTSC-TTCEEEEEE
T ss_pred HcCCcchhhhhhcccccCCEEEEcCccCCC---HHHHHHHHHhCc-CCCEEEEEe
Confidence 2100 00112244699999999884 356666766543 456777776
No 110
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.48 E-value=0.00014 Score=65.52 Aligned_cols=26 Identities=12% Similarity=0.041 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
+...+++|++|+|||+++..++..+.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34678999999999999987776654
No 111
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.42 E-value=0.00091 Score=61.42 Aligned_cols=45 Identities=13% Similarity=0.092 Sum_probs=32.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIF 202 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~ 202 (517)
.+..++|+|+||+|||++++.++. . .+ -.++|++.....+...+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~--~-----~~---~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL--L-----SG---KKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--H-----HC---SEEEEEESSCCCCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--H-----cC---CcEEEEECCCCCCHHHHH
Confidence 355789999999999999999987 1 11 368889887644554443
No 112
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.40 E-value=0.00043 Score=64.13 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=30.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCC
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTS 194 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~ 194 (517)
.+..++|+|++|+|||++++.++..+... + -.+++++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~----~---~~v~~~~~~~ 61 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRD----G---DPCIYVTTEE 61 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHH----T---CCEEEEESSS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHC----C---CeEEEEEccc
Confidence 35578899999999999999998776532 1 2467777644
No 113
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.38 E-value=0.00023 Score=84.61 Aligned_cols=91 Identities=14% Similarity=0.039 Sum_probs=55.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCC---CCCCCHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKL---NGSTSPLQY 224 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~---~~~~~~~~~ 224 (517)
++.+++|+||||||||+++.+++.+... .| ..++++++.....+.. +..++..... .......+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~----~G---~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~ 1493 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQR----EG---KTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQA 1493 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT----TT---CCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH----cC---CcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHH
Confidence 4678999999999999999999876543 23 2588898887655544 3344311100 001111233
Q ss_pred HHHHHHhhhccCCCceEEEEEeCcchhcc
Q 010136 225 LQNLYSQKLHSSVMKMMLIIADELDYLIT 253 (517)
Q Consensus 225 l~~~~~~~~~~~~~~~~vI~iDEiD~L~~ 253 (517)
++.+.. ..+...+.+|||||++.+..
T Consensus 1494 l~~~~~---lvr~~~~~lVVIDsi~al~p 1519 (2050)
T 3cmu_A 1494 LEICDA---LARSGAVDVIVVDSVAALTP 1519 (2050)
T ss_dssp HHHHHH---HHHHTCCSEEEESCGGGCCC
T ss_pred HHHHHH---HHhcCCCCEEEEcChhHhcc
Confidence 332222 11245678999999987664
No 114
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.37 E-value=0.00082 Score=72.09 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=24.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
.+.++|.|+||||||+++..++..+..
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~ 190 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALIQ 190 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999888764
No 115
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.27 E-value=0.00019 Score=84.33 Aligned_cols=91 Identities=15% Similarity=0.066 Sum_probs=59.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCC---CHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGST---SPLQYL 225 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~---~~~~~l 225 (517)
+..++||||||||||+++++++.+-... |. ..++|++..... .++. ..++-....+.+. ..++.+
T Consensus 1082 g~~~l~~G~~g~GKT~la~~~~~~~~~~----g~---~~~fi~~~~~~~--~~~~---~~~G~d~~~~~~~~~~~~e~~l 1149 (1706)
T 3cmw_A 1082 GRIVEIYGPESSGKTTLTLQVIAAAQRE----GK---TCAFIDAEHALD--PIYA---RKLGVDIDNLLCSQPDTGEQAL 1149 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT----TC---CEEEECTTSCCC--HHHH---HHTTCCGGGCEEECCSSHHHHH
T ss_pred CCEEEEEcCCCCChHHHHHHHHHHhhhc----CC---ceeEEEcccchH--HHHH---HHhCCCHHHHhhccccchHHHH
Confidence 3359999999999999999998765432 22 478888866543 3332 4444322222111 136667
Q ss_pred HHHHHhhhccCCCceEEEEEeCcchhccc
Q 010136 226 QNLYSQKLHSSVMKMMLIIADELDYLITR 254 (517)
Q Consensus 226 ~~~~~~~~~~~~~~~~vI~iDEiD~L~~~ 254 (517)
+.++. .++...+++||+||+|.|...
T Consensus 1150 ~~~~~---~ar~~~~~~i~~d~~~al~~~ 1175 (1706)
T 3cmw_A 1150 EICDA---LARSGAVDVIVVDSVAALTPK 1175 (1706)
T ss_dssp HHHHH---HHHHTCCSEEEESCGGGCCCH
T ss_pred HHHHH---HHHhcCCeEEEeCchHhcCcc
Confidence 66664 234567899999999988765
No 116
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.23 E-value=0.0015 Score=60.27 Aligned_cols=145 Identities=13% Similarity=0.115 Sum_probs=73.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCC---CCCCC-HHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKL---NGSTS-PLQYL 225 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~---~~~~~-~~~~l 225 (517)
-++++.|+||+|||+++-.++..+... |. .++.+......+.... .+...+...... ..+.. ....+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~----G~---~V~v~d~D~q~~~~~~--al~~gl~~~~~~~~~~~~~~~~e~~l 77 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQ----GV---RVMAGVVETHGRAETE--ALLNGLPQQPLLRTEYRGMTLEEMDL 77 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT----TC---CEEEEECCCTTCHHHH--HHHTTSCBCCCEEEEETTEEEEECCH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC----CC---CEEEEEeCCCCChhHH--HHhcCccccCcceeecCCcccccccH
Confidence 469999999999999999998887642 32 4666666554443321 122222111000 00000 01123
Q ss_pred HHHHHhhhccCCCceEEEEEeCcchhccc--CchHHHHHhccCCCCCCcEEEEEEECCCCc---------------chhh
Q 010136 226 QNLYSQKLHSSVMKMMLIIADELDYLITR--DRAVLHDLFMLTTFPFSRFILIGIANAIDL---------------ADRF 288 (517)
Q Consensus 226 ~~~~~~~~~~~~~~~~vI~iDEiD~L~~~--~~~~L~~l~~~~~~~~~~v~lI~ian~~~~---------------~~~l 288 (517)
...+. .++-+++|||+-+.... ....+++.+... -.+.+-++.++|-..+ .+++
T Consensus 78 ~~~L~-------~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~--l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~v 148 (228)
T 2r8r_A 78 DALLK-------AAPSLVLVDELAHTNAPGSRHTKRWQDIQEL--LAAGIDVYTTVNVQHLESLNDQVRGITGVQVRETL 148 (228)
T ss_dssp HHHHH-------HCCSEEEESCTTCBCCTTCSSSBHHHHHHHH--HHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCB
T ss_pred HHHHh-------cCCCEEEEeCCCCCCcccchhHHHHHHHHHH--HcCCCCEEEEccccccccHHHHHHHHcCCCcCCcC
Confidence 33332 13569999998875222 112222222221 1234557777773211 1112
Q ss_pred cccccccCCCceEEEeCCCCHHHHHHH
Q 010136 289 LPRLQSMNCKPLVVTFRAYSKDQIIRI 315 (517)
Q Consensus 289 ~~~l~sr~~~~~~i~f~p~~~~e~~~I 315 (517)
..++... . ..|.+-..+++++.+-
T Consensus 149 pd~~~~~-a--~~v~lvD~~p~~l~~r 172 (228)
T 2r8r_A 149 PDWVLQE-A--FDLVLIDLPPRELLER 172 (228)
T ss_dssp CHHHHHT-C--SEEEEBCCCHHHHHHH
T ss_pred ccHHHhh-C--CeEEEecCCHHHHHHH
Confidence 2222222 2 4788888899885543
No 117
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.14 E-value=0.00088 Score=66.55 Aligned_cols=90 Identities=14% Similarity=0.097 Sum_probs=53.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCC---CCCCCCHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKK---LNGSTSPLQYL 225 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~---~~~~~~~~~~l 225 (517)
+..++|+||||+|||+++..++..+... + -.++|++........ .+..++.... ........+.+
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~----g---g~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l 128 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM----G---GVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQAL 128 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT----T---CCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc----C---CeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHH
Confidence 4578899999999999999999876531 1 257899887665543 3444432211 01112222222
Q ss_pred HHHHHhhhccCCCceEEEEEeCcchhcc
Q 010136 226 QNLYSQKLHSSVMKMMLIIADELDYLIT 253 (517)
Q Consensus 226 ~~~~~~~~~~~~~~~~vI~iDEiD~L~~ 253 (517)
..+.... ....+.+++||.+..+..
T Consensus 129 -~~~~~l~--~~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 129 -EIVDELV--RSGVVDLIVVDSVAALVP 153 (356)
T ss_dssp -HHHHHHH--HTSCCSEEEEECTTTCCC
T ss_pred -HHHHHHh--hhcCCCeEEehHhhhhcC
Confidence 2222111 134567999999988864
No 118
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.12 E-value=0.0032 Score=64.18 Aligned_cols=131 Identities=15% Similarity=0.120 Sum_probs=73.1
Q ss_pred HHHhhcCcCCCCCCCCCcHHHHHHHHHHHHHhhccC---------CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCC
Q 010136 112 AVREALHVSTAPSTIVCREDEQKKVLEFCKKNLEEE---------KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGL 182 (517)
Q Consensus 112 ~~~~~l~~~~~p~~l~gRe~e~~~l~~~L~~~l~~~---------~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~ 182 (517)
..++.+....++..+-.++..++.+.+.|...+... .+..+++.|++|+||||++..++..+... |
T Consensus 51 ~v~~~~~~~~~~~~~~~~~~v~~~v~~eL~~~L~~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~----G- 125 (433)
T 3kl4_A 51 KIKERLNKEKPPSVLERKEWFISIVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKR----G- 125 (433)
T ss_dssp HHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHHHCSSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHHHHHT----T-
T ss_pred HHHHHHhcccccccCChHHHHHHHHHHHHHHhcCccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHc----C-
Confidence 333333334445555556666666666666655431 24578899999999999999999887642 2
Q ss_pred CCceEEEEeCCCCCCH-HHHHHHHHHHhCCCCCC-CCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhc
Q 010136 183 QQPEVFSINCTSLTNT-SEIFSKILLKLQPRKKL-NGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLI 252 (517)
Q Consensus 183 ~~~~~v~vn~~~~~s~-~~i~~~i~~~l~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~ 252 (517)
.++..+.|...... ..-+......++..... ..+..+.......+.. .....+-+|+||....+.
T Consensus 126 --~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~---a~~~~~DvvIIDTaGr~~ 192 (433)
T 3kl4_A 126 --YKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDI---FVKNKMDIIIVDTAGRHG 192 (433)
T ss_dssp --CCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHH---TTTTTCSEEEEEECCCSS
T ss_pred --CeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHH---HHhcCCCEEEEECCCCcc
Confidence 24666666554321 22222233333322111 1223344444444442 122355788999997764
No 119
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.12 E-value=0.0018 Score=64.61 Aligned_cols=91 Identities=9% Similarity=0.046 Sum_probs=54.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCC---CCCCCCHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKK---LNGSTSPLQY 224 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~---~~~~~~~~~~ 224 (517)
.+..++|+|+||+|||+++..++..+... + ..++|++........ + +..++.... ...... .+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~----g---~~vlyi~~E~s~~~~--~---a~~~g~d~~~l~i~~~~~-~e~ 139 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKA----G---GTCAFIDAEHALDPV--Y---ARALGVNTDELLVSQPDN-GEQ 139 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT----T---CCEEEEESSCCCCHH--H---HHHTTCCGGGCEEECCSS-HHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHC----C---CeEEEEECCCChhHH--H---HHHcCCCHHHceeecCCc-HHH
Confidence 35578999999999999999998776431 2 258899887644433 1 334432211 000112 233
Q ss_pred HHHHHHhhhccCCCceEEEEEeCcchhcc
Q 010136 225 LQNLYSQKLHSSVMKMMLIIADELDYLIT 253 (517)
Q Consensus 225 l~~~~~~~~~~~~~~~~vI~iDEiD~L~~ 253 (517)
+...+... .....+.+||||.+..+..
T Consensus 140 ~l~~l~~l--~~~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 140 ALEIMELL--VRSGAIDVVVVDSVAALTP 166 (366)
T ss_dssp HHHHHHHH--HTTTCCSEEEEECTTTCCC
T ss_pred HHHHHHHH--HhcCCCCEEEEeChHHhcc
Confidence 33333311 1234567999999999874
No 120
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.12 E-value=0.002 Score=60.08 Aligned_cols=102 Identities=11% Similarity=0.034 Sum_probs=53.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCC-----C--CCCCCC
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRK-----K--LNGSTS 220 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~-----~--~~~~~~ 220 (517)
.+..+.|+||||+|||++++.++...... ...+...-.++|+++........+. .++..++... . ......
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~-~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLP-IDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSC-GGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCc-hhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCC
Confidence 35678999999999999999998742110 0000011368999987744444432 3334442210 0 000111
Q ss_pred HHH---HHHHHHHhhhccCCCceEEEEEeCcchhccc
Q 010136 221 PLQ---YLQNLYSQKLHSSVMKMMLIIADELDYLITR 254 (517)
Q Consensus 221 ~~~---~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~ 254 (517)
..+ .+..+.. .. ....+.+|+|||+..+...
T Consensus 101 ~~~~~~~~~~~~~-~~--~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 101 TDHQTQLLYQASA-MM--VESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHHHHHHHHHH-HH--HHSCEEEEEEETSSGGGC-
T ss_pred HHHHHHHHHHHHH-HH--hcCCceEEEEeCchHHHHH
Confidence 111 1111111 11 1346789999999987643
No 121
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.01 E-value=0.0048 Score=62.87 Aligned_cols=122 Identities=19% Similarity=0.178 Sum_probs=69.5
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHhhcc--------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeC
Q 010136 121 TAPSTIVCREDEQKKVLEFCKKNLEE--------EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINC 192 (517)
Q Consensus 121 ~~p~~l~gRe~e~~~l~~~L~~~l~~--------~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~ 192 (517)
.++..+-..+..++.+.+.|...+.. ..+..++++|++|+||||++..++..+.. .| .++..+.|
T Consensus 64 ~v~~~~~~~~~v~~~l~~eL~~~L~~~~~~~~~~~~p~vIlivG~~G~GKTTt~~kLA~~l~~----~G---~kVllv~~ 136 (443)
T 3dm5_A 64 KPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGIQGSGKTTTVAKLARYFQK----RG---YKVGVVCS 136 (443)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHTTSSCCCCCCCSSSEEEEEECCTTSSHHHHHHHHHHHHHT----TT---CCEEEEEC
T ss_pred cccccCCcHHHHHHHHHHHHHHHhcCcccccccCCCCeEEEEECcCCCCHHHHHHHHHHHHHH----CC---CeEEEEeC
Confidence 34444444555556666666665432 22557899999999999999999988764 23 35777787
Q ss_pred CCCCCHH-HHHHHHHHHhCCCCCC-CCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhc
Q 010136 193 TSLTNTS-EIFSKILLKLQPRKKL-NGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLI 252 (517)
Q Consensus 193 ~~~~s~~-~i~~~i~~~l~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~ 252 (517)
....... .-+.......+..... ..+..+...+...+... .....-+||||.+-.+.
T Consensus 137 D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a---~~~~~DvVIIDTaGrl~ 195 (443)
T 3dm5_A 137 DTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF---KSKGVDIIIVDTAGRHK 195 (443)
T ss_dssp CCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH---HHTTCSEEEEECCCCSS
T ss_pred CCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH---HhCCCCEEEEECCCccc
Confidence 6654422 2222233333321111 12334455555555421 12235689999987654
No 122
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.96 E-value=0.0018 Score=58.27 Aligned_cols=124 Identities=11% Similarity=0.078 Sum_probs=61.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCC---CCCHHHHHHHHHHHh--CCCCCCCCCCC--
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTS---LTNTSEIFSKILLKL--QPRKKLNGSTS-- 220 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~---~~s~~~i~~~i~~~l--~~~~~~~~~~~-- 220 (517)
..+.+++++.+|.||||+|-.++-..-. .|. ++..+.... ......++..+.-.+ .+..-.+....
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g----~G~---rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~ 99 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVG----HGK---NVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNRE 99 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHH----TTC---CEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHH----CCC---eEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcH
Confidence 4578999999999999999988765443 343 466664433 223344443331000 00000011110
Q ss_pred -HHHHHHHHHHhh-hccCCCceEEEEEeCcchhcccC---chHHHHHhccCCCCCCcEEEEEEECC
Q 010136 221 -PLQYLQNLYSQK-LHSSVMKMMLIIADELDYLITRD---RAVLHDLFMLTTFPFSRFILIGIANA 281 (517)
Q Consensus 221 -~~~~l~~~~~~~-~~~~~~~~~vI~iDEiD~L~~~~---~~~L~~l~~~~~~~~~~v~lI~ian~ 281 (517)
........+... ..-.....-+|||||+-....-. .+.+.+++.. .....-||.++|.
T Consensus 100 ~~~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~---Rp~~~~vIlTGr~ 162 (196)
T 1g5t_A 100 ADTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA---RPGHQTVIITGRG 162 (196)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT---SCTTCEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh---CcCCCEEEEECCC
Confidence 011122222210 01123566799999997654332 2334444432 2234556666665
No 123
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.94 E-value=0.0026 Score=59.36 Aligned_cols=48 Identities=15% Similarity=0.259 Sum_probs=33.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSK 204 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~ 204 (517)
.+..++|+|+||+|||+++..++..+... + -.++|++... +...+...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~----~---~~v~~~~~e~--~~~~~~~~ 69 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM----G---EPGIYVALEE--HPVQVRQN 69 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHT----T---CCEEEEESSS--CHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc----C---CeEEEEEccC--CHHHHHHH
Confidence 35578999999999999999887765431 2 2578888654 24444333
No 124
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.94 E-value=0.0015 Score=64.84 Aligned_cols=90 Identities=11% Similarity=0.057 Sum_probs=53.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCC---CCCCCHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKL---NGSTSPLQY 224 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~---~~~~~~~~~ 224 (517)
.+..++|+|+||+|||+++..++..+... + -.++|++........ .+..++..... ..... .+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~----g---~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~-~e~ 126 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA----G---GIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDT-GEQ 126 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT----T---CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSS-HHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC----C---CeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCC-HHH
Confidence 35578999999999999999998776532 2 257888887644432 13344321110 00112 222
Q ss_pred HHHHHHhhhccCCCceEEEEEeCcchhc
Q 010136 225 LQNLYSQKLHSSVMKMMLIIADELDYLI 252 (517)
Q Consensus 225 l~~~~~~~~~~~~~~~~vI~iDEiD~L~ 252 (517)
+..+... ......+.+||||++..+.
T Consensus 127 ~l~~~~~--l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 127 ALEIADM--LVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp HHHHHHH--HHTTTCCSEEEEECGGGCC
T ss_pred HHHHHHH--HHhcCCCCEEEEcChHhhc
Confidence 2222221 1124457899999999987
No 125
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.85 E-value=0.0017 Score=60.83 Aligned_cols=41 Identities=17% Similarity=0.126 Sum_probs=28.2
Q ss_pred CCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 126 IVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 126 l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
+--+..|.+.+..++ . ...++|+||+|+|||.++..++..+
T Consensus 92 ~~l~~~Q~~ai~~~~----~---~~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 92 ISLRDYQEKALERWL----V---DKRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CCCCHHHHHHHHHHT----T---TSEEEEEESSSTTHHHHHHHHHHHS
T ss_pred CCcCHHHHHHHHHHH----h---CCCEEEEeCCCCCHHHHHHHHHHHc
Confidence 344555555554432 2 2459999999999999998877654
No 126
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.83 E-value=0.0046 Score=59.93 Aligned_cols=93 Identities=14% Similarity=0.032 Sum_probs=56.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCC---CCCCCHHHHH-
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKL---NGSTSPLQYL- 225 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~---~~~~~~~~~l- 225 (517)
+.++|+||||+|||+++..++..+.... .+ -.++||++.....+. -+..++..... ..... .+.+
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g--~g---~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~-~E~~~ 97 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQY--PD---AVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQS-LEQLR 97 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHC--TT---CEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSB-HHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcC--CC---ceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCC-HHHHH
Confidence 3688999999999999999887765320 01 268999987765553 25556432210 00112 2222
Q ss_pred HHHHHhhhccCCCceEEEEEeCcchhcc
Q 010136 226 QNLYSQKLHSSVMKMMLIIADELDYLIT 253 (517)
Q Consensus 226 ~~~~~~~~~~~~~~~~vI~iDEiD~L~~ 253 (517)
..+......-....+.+||||-|..|..
T Consensus 98 l~i~~~l~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 98 IDMVNQLDAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HHHHHHHHTCCTTCCEEEEEECSTTCBC
T ss_pred HHHHHHHHHhhccCceEEEEeccccccc
Confidence 2222211001356789999999999974
No 127
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.83 E-value=0.0087 Score=62.76 Aligned_cols=74 Identities=15% Similarity=0.181 Sum_probs=48.8
Q ss_pred ceEEEEEeCcchhcccC-c---hHHHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHH
Q 010136 239 KMMLIIADELDYLITRD-R---AVLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIR 314 (517)
Q Consensus 239 ~~~vI~iDEiD~L~~~~-~---~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~ 314 (517)
.+++|||||++.|.... . +.|..+.... ....|.+|.++.... .+.+...+++. + ..+|.|.--+..+...
T Consensus 343 P~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~G--Ra~GIhLIlaTQRPs-~d~I~~~Iran-~-~~RI~lrv~s~~Dsr~ 417 (574)
T 2iut_A 343 PTIVVVVDEFADMMMIVGKKVEELIARIAQKA--RAAGIHLILATQRPS-VDVITGLIKAN-I-PTRIAFQVSSKIDSRT 417 (574)
T ss_dssp CEEEEEESCCTTHHHHTCHHHHHHHHHHHHHC--TTTTEEEEEEESCCC-TTTSCHHHHHT-C-CEEEEECCSCHHHHHH
T ss_pred CcEEEEEeCHHHHhhhhhHHHHHHHHHHHHHH--hhCCeEEEEEecCcc-cccccHHHHhh-h-ccEEEEEcCCHHHHHH
Confidence 35899999999886432 2 3344454443 345677787787543 12355556665 5 4589999999999888
Q ss_pred HHH
Q 010136 315 ILQ 317 (517)
Q Consensus 315 IL~ 317 (517)
||-
T Consensus 418 ILd 420 (574)
T 2iut_A 418 ILD 420 (574)
T ss_dssp HHS
T ss_pred hcC
Confidence 874
No 128
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.80 E-value=0.0016 Score=64.24 Aligned_cols=47 Identities=21% Similarity=0.395 Sum_probs=37.5
Q ss_pred cHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 129 REDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 129 Re~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
-+.-.+.+...+...+..+...+++|+|+||+|||++++.++..+..
T Consensus 4 ~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 4 THKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp HHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 34555667777776676666678999999999999999999998874
No 129
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=96.80 E-value=0.00078 Score=51.20 Aligned_cols=74 Identities=19% Similarity=0.256 Sum_probs=56.2
Q ss_pred CCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchh
Q 010136 305 RAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASG-DMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFD 383 (517)
Q Consensus 305 ~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~G-d~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~ 383 (517)
++++.++..+||+..+..+.. -++..++.+|+.+.+++| |+. .+|+.|+..|.+++..
T Consensus 1 plPd~~~R~~Il~~~l~~~~~--~~~~dl~~la~~t~G~SGADi~---~l~~eA~~~a~~~~~~---------------- 59 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNL--TRGINLRKIAELMPGASGAEVK---GVCTEAGMYALRERRV---------------- 59 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEE--CTTCCHHHHHHTCTTCCHHHHH---HHHHHHHHHHHHTTCS----------------
T ss_pred CcCCHHHHHHHHHHHhcCCCC--CCccCHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHhCCC----------------
Confidence 468999999999988876532 123347888886655555 444 6999999988887654
Q ss_pred hhhhhhhhccCccccHHHHHHHHHHhcc
Q 010136 384 QQAASAFEFFNSQVRVDHMAVALSNTFK 411 (517)
Q Consensus 384 ~~~~~~~~~~~~~Vt~~~v~~a~~~~~~ 411 (517)
.|+.+||..|+.++..
T Consensus 60 ------------~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 60 ------------HVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp ------------EECHHHHHHHHHHHHC
T ss_pred ------------CCCHHHHHHHHHHHHh
Confidence 7999999999998764
No 130
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.74 E-value=0.0052 Score=62.05 Aligned_cols=100 Identities=14% Similarity=0.059 Sum_probs=53.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCC-------CCCCCCH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKK-------LNGSTSP 221 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~-------~~~~~~~ 221 (517)
+..+.|+||||+|||++++.++-..... ...|...-.++|++.........+ ..++..++-... .......
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p-~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIP-LDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSC-GGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccC-cccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCCh
Confidence 5578899999999999999775332210 011111135899998775444443 334555432100 0000111
Q ss_pred H---HHHHHHHHhhhccCCCceEEEEEeCcchhcc
Q 010136 222 L---QYLQNLYSQKLHSSVMKMMLIIADELDYLIT 253 (517)
Q Consensus 222 ~---~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~ 253 (517)
. +.+..... .. ....+.+|+||++..+..
T Consensus 256 ~~~~~~l~~~~~-~l--~~~~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 256 DHQLRLLDAAAQ-MM--SESRFSLIVVDSVMALYR 287 (400)
T ss_dssp HHHHHHHHHHHH-HH--HHSCEEEEEEETGGGGCC
T ss_pred HHHHHHHHHHHH-HH--HhcCCceEEecchhhhCc
Confidence 1 11111111 01 124688999999988764
No 131
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.68 E-value=0.00057 Score=61.49 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=26.3
Q ss_pred CCCeEEEEcCCCCcHH-HHHHHHHHHHHHHHHhcCCCCceEEEEeCC
Q 010136 148 KAGSLYVCGCPGTGKS-LSMEKVQHYLVDWAKEAGLQQPEVFSINCT 193 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT-~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~ 193 (517)
.+.-.+++|+.|+||| .|++.+.+.... + ..++++...
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~-----~---~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIA-----Q---YKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT-----T---CCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHc-----C---CeEEEEccc
Confidence 4557889999999999 677776554332 2 357777644
No 132
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.68 E-value=0.0026 Score=59.29 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=19.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~ 171 (517)
+..+++.|++|+|||+++...+-
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHHh
Confidence 46899999999999988776643
No 133
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.66 E-value=0.0058 Score=56.32 Aligned_cols=49 Identities=16% Similarity=0.064 Sum_probs=32.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNT 198 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~ 198 (517)
+..+.|.||+|+||||+++.++..+..... .+...-..++++.......
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~-~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPE-EGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGG-GTCCSCEEEEEESSSCCCH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccc-cCCCCCEEEEEECCCCCCH
Confidence 457889999999999999999875431111 1111125788888764343
No 134
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.62 E-value=0.0061 Score=60.60 Aligned_cols=92 Identities=12% Similarity=0.003 Sum_probs=54.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCC--CCCCHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLN--GSTSPLQYL 225 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~--~~~~~~~~l 225 (517)
.+..++|+|+||+|||+++..++..+... + ..++|++.....++.. +..++...... ......+.+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~----g---~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~ 129 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE----G---KTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQA 129 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT----T---CCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC----C---CeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHH
Confidence 35679999999999999999998776531 2 2588999866544331 33443211000 001112333
Q ss_pred HHHHHhhhccCCCceEEEEEeCcchhcc
Q 010136 226 QNLYSQKLHSSVMKMMLIIADELDYLIT 253 (517)
Q Consensus 226 ~~~~~~~~~~~~~~~~vI~iDEiD~L~~ 253 (517)
...+.... ....+.+||||.+..+..
T Consensus 130 ~~~~~~l~--~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 130 LEICDALA--RSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHHHHHHH--HHTCCSEEEEECGGGCCC
T ss_pred HHHHHHHH--hccCCCEEEEcCHHHhcc
Confidence 33332111 134567999999998874
No 135
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=96.61 E-value=0.00083 Score=52.10 Aligned_cols=76 Identities=18% Similarity=0.253 Sum_probs=57.1
Q ss_pred EeCCCCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 010136 303 TFRAYSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASG-DMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGL 381 (517)
Q Consensus 303 ~f~p~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~G-d~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~ 381 (517)
+-.|++.+++.+||+..+...... ++-.++.+|+.+.+++| |+. .+|+.|+..|.++...
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~--~dvdl~~LA~~T~G~SGADL~---~l~~eAa~~alr~~~~-------------- 67 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLT--RGINLRKIAELMPGASGAEVK---GVCTEAGMYALRERRV-------------- 67 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEEC--TTCCCHHHHHTCSSCCHHHHH---HHHHHHHHHHHHTTCS--------------
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCC--cccCHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHHcCC--------------
Confidence 457899999999999888765321 23336778876656665 444 6999999988876543
Q ss_pred hhhhhhhhhhccCccccHHHHHHHHHHhcc
Q 010136 382 FDQQAASAFEFFNSQVRVDHMAVALSNTFK 411 (517)
Q Consensus 382 ~~~~~~~~~~~~~~~Vt~~~v~~a~~~~~~ 411 (517)
.|+.+||..|+.++..
T Consensus 68 --------------~I~~~df~~Al~~v~p 83 (86)
T 2krk_A 68 --------------HVTQEDFEMAVAKVMQ 83 (86)
T ss_dssp --------------EECHHHHHHHHHHHHC
T ss_pred --------------CCCHHHHHHHHHHHcc
Confidence 7999999999988754
No 136
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.60 E-value=0.0066 Score=59.60 Aligned_cols=99 Identities=16% Similarity=0.053 Sum_probs=55.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCC-------CCCCCC
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKK-------LNGSTS 220 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~-------~~~~~~ 220 (517)
.+..++|+|+||+|||+++..++..+.... ..+...-.++|++.....++..+.. ++..++.... ......
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~-~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPP-EKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCG-GGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhccc-ccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCC
Confidence 355789999999999999999986542110 0111113689999877545555433 3444432110 000111
Q ss_pred HHH------HHHHHHHhhhccCCCceEEEEEeCcchhcc
Q 010136 221 PLQ------YLQNLYSQKLHSSVMKMMLIIADELDYLIT 253 (517)
Q Consensus 221 ~~~------~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~ 253 (517)
..+ .+..++. ....+.+||||.+..+..
T Consensus 184 ~~~~~~~l~~l~~~~~-----~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 184 TDHQIAIVDDLQELVS-----KDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp HHHHHHHHHHHHHHHH-----HCTTEEEEEETTTTHHHH
T ss_pred HHHHHHHHHHHHHHHH-----hccCCCEEEEeCcHHHhh
Confidence 111 1222222 125678999999998853
No 137
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.56 E-value=0.011 Score=60.97 Aligned_cols=49 Identities=10% Similarity=0.184 Sum_probs=34.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKI 205 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i 205 (517)
+..++|.|+||+|||+++..++..+... .| ..+++++... +..++...+
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g---~~Vl~~s~E~--s~~~l~~r~ 251 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATK---TN---ENVAIFSLEM--SAQQLVMRM 251 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHH---SS---CCEEEEESSS--CHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh---CC---CcEEEEECCC--CHHHHHHHH
Confidence 4578899999999999999998876532 22 2477777543 345555444
No 138
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.54 E-value=0.0012 Score=58.49 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=22.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
+..++|+|+||+||||+++.+++.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35789999999999999999988763
No 139
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.54 E-value=0.0025 Score=75.81 Aligned_cols=92 Identities=12% Similarity=0.008 Sum_probs=56.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCC--CCCCCHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKL--NGSTSPLQYL 225 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~--~~~~~~~~~l 225 (517)
.+..++|.|+||+|||+++..++..+... + -.++|+++........ +..++..... .......+.+
T Consensus 731 ~G~lilIaG~PG~GKTtLalqlA~~~a~~----g---~~VlyiS~Ees~~ql~-----A~rlG~~~~~l~i~~~~~i~~i 798 (2050)
T 3cmu_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQRE----G---KTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQA 798 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT----T---CCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc----C---CcEEEEECCCcHHHHH-----HHHcCCCccceEEecCCCHHHH
Confidence 45678999999999999999999877531 1 2589999988665542 3444321100 0011113333
Q ss_pred HHHHHhhhccCCCceEEEEEeCcchhcc
Q 010136 226 QNLYSQKLHSSVMKMMLIIADELDYLIT 253 (517)
Q Consensus 226 ~~~~~~~~~~~~~~~~vI~iDEiD~L~~ 253 (517)
...+.... ....+.+||||.++.+..
T Consensus 799 ~~~~r~l~--~~~~~~LVIIDsLq~i~~ 824 (2050)
T 3cmu_A 799 LEICDALA--RSGAVDVIVVDSVAALTP 824 (2050)
T ss_dssp HHHHHHHH--HHTCCSEEEESCGGGCCC
T ss_pred HHHHHHHh--hccCCCEEEEcchhhhcc
Confidence 33333111 124578999999998865
No 140
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.48 E-value=0.0017 Score=57.91 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
...++|+|+||+||||+++.+++.++
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988763
No 141
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.47 E-value=0.0014 Score=63.22 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
+..++|+||||+||||+++.++..+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999998765
No 142
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.45 E-value=0.002 Score=58.48 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=23.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.+..++|.|+||+||||+++.+++.++
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999998763
No 143
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.45 E-value=0.0099 Score=54.24 Aligned_cols=27 Identities=19% Similarity=0.079 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
+...+++|+.|+|||+.+..++.....
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~ 54 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQF 54 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 345668999999999998888776643
No 144
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.44 E-value=0.002 Score=58.48 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=23.5
Q ss_pred cCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 146 EEKAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 146 ~~~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
...+..+.|.|++|+||||+++.++..+
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3456789999999999999999998776
No 145
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.41 E-value=0.0058 Score=60.54 Aligned_cols=99 Identities=12% Similarity=0.068 Sum_probs=54.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCC----------CCCCC
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRK----------KLNGS 218 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~----------~~~~~ 218 (517)
+..+.|+|+||+|||+++..++...... ...+...-.++|++.....++..+.. ++..++... .....
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~-~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLP-GAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSC-BTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcc-cccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCH
Confidence 4468899999999999999988653210 00000113689999877545555433 334443211 00111
Q ss_pred CCHHHH---HHHHHHhhhccCCCceEEEEEeCcchhcc
Q 010136 219 TSPLQY---LQNLYSQKLHSSVMKMMLIIADELDYLIT 253 (517)
Q Consensus 219 ~~~~~~---l~~~~~~~~~~~~~~~~vI~iDEiD~L~~ 253 (517)
....+. +..++. .....+.+||||.+..+..
T Consensus 200 e~~~~ll~~l~~~i~----~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 200 EHQMELLDYVAAKFH----EEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp THHHHHHHHHHHHHH----HSCSSEEEEEEETSGGGHH
T ss_pred HHHHHHHHHHHHHHH----hcCCCccEEEEechHHHHH
Confidence 111111 222222 0115678999999998863
No 146
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.40 E-value=0.021 Score=55.71 Aligned_cols=52 Identities=13% Similarity=0.171 Sum_probs=36.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLK 208 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~ 208 (517)
.+..++|.|+||+|||+++..++..+.. .+ ..++|++.. .+..++...+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~----~g---~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSD----ND---DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHT----TT---CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH----cC---CeEEEEECC--CCHHHHHHHHHHH
Confidence 3557899999999999999999866542 12 367888865 3456665555443
No 147
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.40 E-value=0.0083 Score=60.97 Aligned_cols=121 Identities=13% Similarity=0.139 Sum_probs=60.8
Q ss_pred HHHHHHHHhhcc-----CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHh
Q 010136 135 KVLEFCKKNLEE-----EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKL 209 (517)
Q Consensus 135 ~l~~~L~~~l~~-----~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l 209 (517)
.+...|...+.. ......+|.|+||||||+++..++.. . ..+.+... ......+.+.+
T Consensus 142 ~~l~~l~~~~~~~~~~~~~~~v~~I~G~aGsGKTt~I~~~~~~----------~--~~lVlTpT-----~~aa~~l~~kl 204 (446)
T 3vkw_A 142 AKLRTLRRLLKDGEPHVSSAKVVLVDGVPGCGKTKEILSRVNF----------E--EDLILVPG-----RQAAEMIRRRA 204 (446)
T ss_dssp HHHHHHHTTCBTTBCCCCCSEEEEEEECTTSCHHHHHHHHCCT----------T--TCEEEESC-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccEEEEEcCCCCCHHHHHHHHhcc----------C--CeEEEeCC-----HHHHHHHHHHh
Confidence 455555555322 23446789999999999999887531 0 12333322 23334555555
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEE
Q 010136 210 QPRKKLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIG 277 (517)
Q Consensus 210 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ 277 (517)
...............++.++-..........-+|||||+-.+. ...++.++.... ..+++++|
T Consensus 205 ~~~~~~~~~~~~V~T~dsfL~~~~~~~~~~~d~liiDE~sm~~---~~~l~~l~~~~~--~~~vilvG 267 (446)
T 3vkw_A 205 NASGIIVATKDNVRTVDSFLMNYGKGARCQFKRLFIDEGLMLH---TGCVNFLVEMSL--CDIAYVYG 267 (446)
T ss_dssp TTTSCCCCCTTTEEEHHHHHHTTTSSCCCCCSEEEEETGGGSC---HHHHHHHHHHTT--CSEEEEEE
T ss_pred hhcCccccccceEEEeHHhhcCCCCCCCCcCCEEEEeCcccCC---HHHHHHHHHhCC--CCEEEEec
Confidence 4221100011112334444431100000114689999998763 344555544432 26777777
No 148
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.33 E-value=0.0022 Score=56.31 Aligned_cols=24 Identities=21% Similarity=0.026 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.++|.|+||+||||+++.+++.++
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 688999999999999999987763
No 149
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.32 E-value=0.0025 Score=56.68 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..++|+|+||+||||+++.+++.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999998776
No 150
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.32 E-value=0.0026 Score=56.85 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
+..++|.|+||+||||+++.+++.++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999998775
No 151
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.32 E-value=0.051 Score=56.39 Aligned_cols=130 Identities=16% Similarity=0.135 Sum_probs=65.7
Q ss_pred HHhhcCcCCCCCCCCCcHHHHHHHHHHHHHhhcc---------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCC
Q 010136 113 VREALHVSTAPSTIVCREDEQKKVLEFCKKNLEE---------EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQ 183 (517)
Q Consensus 113 ~~~~l~~~~~p~~l~gRe~e~~~l~~~L~~~l~~---------~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~ 183 (517)
.++......++..+-..+...+.+.+.|...+.. ..+..+.|+|+||+||||++..++..+... |
T Consensus 56 v~~~~~~~~~~~~~~~~~~~~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~----G-- 129 (504)
T 2j37_W 56 VKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRK----G-- 129 (504)
T ss_dssp HHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHT----T--
T ss_pred HHHHhhcCcccccCChHHHHHHHHHHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhC----C--
Confidence 3433333334433444444445555555554432 224478899999999999999999877642 2
Q ss_pred CceEEEEeCCCCCCHH-HHHHHHHHHhCCCC-CCCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhc
Q 010136 184 QPEVFSINCTSLTNTS-EIFSKILLKLQPRK-KLNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLI 252 (517)
Q Consensus 184 ~~~~v~vn~~~~~s~~-~i~~~i~~~l~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~ 252 (517)
.++..|++-...... ..+.......+... ....+..+.+.+...+... .....-++|||-.-.+.
T Consensus 130 -~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~---~~~~~DvvIIDTpG~~~ 196 (504)
T 2j37_W 130 -WKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF---KNENFEIIIVDTSGRHK 196 (504)
T ss_dssp -CCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH---HHTTCCEEEEEECCCCT
T ss_pred -CeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH---HHCCCcEEEEeCCCCcc
Confidence 246667765443322 22222223322211 1111233334333333311 01234588899876653
No 152
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.31 E-value=0.0094 Score=59.17 Aligned_cols=51 Identities=20% Similarity=0.155 Sum_probs=32.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTS 199 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~ 199 (517)
.+..+.|+||||+|||++++.++..+.......+.. -.++|++......+.
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~-G~vi~i~~e~~~~~~ 180 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLN-GSVIWIDTENTFRPE 180 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCS-CEEEEEESSSCCCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCC-CeEEEEeCCCCCCHH
Confidence 345788999999999999999987642110111111 256899886653333
No 153
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.28 E-value=0.04 Score=56.19 Aligned_cols=40 Identities=18% Similarity=0.337 Sum_probs=31.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCC
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSL 195 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~ 195 (517)
+..+.|+|++|+||||++..++..+.... .++..+++...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G-------~kVllv~~D~~ 138 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRG-------LKPALIAADTY 138 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHH-------CCEEEECCSCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC-------CeEEEEecccc
Confidence 45899999999999999999998886432 25777777654
No 154
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.27 E-value=0.0045 Score=56.20 Aligned_cols=47 Identities=13% Similarity=0.031 Sum_probs=34.4
Q ss_pred CcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 128 CREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 128 gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
.|++.++.|.+.+... ....+..+.|.|++|+||||+++.++..+..
T Consensus 2 ~~~~~~~~l~~~~~~~-~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAI-KTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp CHHHHHHHHHHHHHTS-CCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHh-ccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3566677777766543 2234457889999999999999999887753
No 155
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.27 E-value=0.015 Score=59.77 Aligned_cols=51 Identities=10% Similarity=0.083 Sum_probs=35.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILL 207 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~ 207 (517)
+..++|.|+||+|||+++..++..... ..+ ..+++++... +..++...+..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~---~~g---~~vl~~slE~--~~~~l~~R~~~ 250 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAAL---KEG---VGVGIYSLEM--PAAQLTLRMMC 250 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH---TTC---CCEEEEESSS--CHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH---hCC---CeEEEEECCC--CHHHHHHHHHH
Confidence 457889999999999999999876643 112 2478887753 45566555543
No 156
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.21 E-value=0.013 Score=59.95 Aligned_cols=96 Identities=13% Similarity=0.181 Sum_probs=53.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCH-HHHHHHHHHH--hCCCC--CCCCCCCHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNT-SEIFSKILLK--LQPRK--KLNGSTSPL 222 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~-~~i~~~i~~~--l~~~~--~~~~~~~~~ 222 (517)
++..+.|+|++|+|||++++.++....... + ...+++.+...++. .+++..+... +.... .......+.
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~---~---~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg 223 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHNIAQEH---G---GISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPG 223 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHHHHHHT---C---CCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHH
T ss_pred cCCEEEEECCCCCCccHHHHHHHhhhhhcc---C---cEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHH
Confidence 456799999999999999999988765432 1 12355555554332 3344434321 00000 000011111
Q ss_pred H---------HHHHHHHhhhccCCCceEEEEEeCcchhcc
Q 010136 223 Q---------YLQNLYSQKLHSSVMKMMLIIADELDYLIT 253 (517)
Q Consensus 223 ~---------~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~ 253 (517)
. .+.++|.+ ..++.++||+|++.++..
T Consensus 224 ~r~~~~~~~ltiAEyFrd----~~G~~VLl~~D~itR~a~ 259 (473)
T 1sky_E 224 ARMRVALTGLTMAEYFRD----EQGQDGLLFIDNIFRFTQ 259 (473)
T ss_dssp HHHHHHHHHHHHHHHHHH----HSCCEEEEEEECTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----hcCCcEEEEeccHHHHHH
Confidence 1 23445541 146789999999998874
No 157
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.20 E-value=0.0015 Score=59.04 Aligned_cols=26 Identities=15% Similarity=-0.030 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
+...+++|+.|+|||+.+..++..+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~ 33 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAK 33 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 45678999999999999988887765
No 158
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.19 E-value=0.0023 Score=56.36 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
+..++|.|++|+||||+++.++..+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998765
No 159
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.18 E-value=0.0025 Score=56.34 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=22.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
..++|.|+||+||||+++.+++.++
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999988764
No 160
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.17 E-value=0.0029 Score=56.55 Aligned_cols=24 Identities=42% Similarity=0.516 Sum_probs=22.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.++|.|+||+||||+++.+++.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999998876
No 161
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.17 E-value=0.0041 Score=56.65 Aligned_cols=42 Identities=14% Similarity=0.164 Sum_probs=29.0
Q ss_pred CCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 127 VCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 127 ~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
.-+.-|.+.+...+. ..++++.+|+|+|||.++-..+..+..
T Consensus 33 ~l~~~Q~~~i~~~~~-------~~~~li~~~tGsGKT~~~~~~~~~~~~ 74 (216)
T 3b6e_A 33 QLRPYQMEVAQPALE-------GKNIIICLPTGSGKTRVAVYIAKDHLD 74 (216)
T ss_dssp CCCHHHHHHHHHHHT-------TCCEEEECSCHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhc-------CCCEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 445555544444432 367999999999999999887766543
No 162
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.15 E-value=0.0039 Score=56.50 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=25.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 147 EKAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 147 ~~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
..+..++|.|++|+||||+++.++..+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999999886
No 163
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.15 E-value=0.003 Score=56.63 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
+..++|.|+||+||||+++.+++.+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999998776
No 164
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.12 E-value=0.0032 Score=55.25 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
...+++|.|+||+||||+++.+++.++
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999988764
No 165
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.10 E-value=0.0031 Score=56.21 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
..++|.|+||+||||+++.+++.++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999988764
No 166
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.09 E-value=0.018 Score=56.34 Aligned_cols=103 Identities=14% Similarity=0.131 Sum_probs=54.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHH---------HhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCC-----
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWA---------KEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKK----- 214 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~---------~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~----- 214 (517)
+..++|+|+||+|||+++..++....-.. ...+...-.++|++.....++..+.. ++..++....
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLDN 176 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhcC
Confidence 45688999999999999999886531000 00111113689999877545665543 3344432110
Q ss_pred --CCCCCCHHHHHHHHHHh--hhccCCCceEEEEEeCcchhcc
Q 010136 215 --LNGSTSPLQYLQNLYSQ--KLHSSVMKMMLIIADELDYLIT 253 (517)
Q Consensus 215 --~~~~~~~~~~l~~~~~~--~~~~~~~~~~vI~iDEiD~L~~ 253 (517)
...... .+.+..++.. ........+.+||||.+..+..
T Consensus 177 l~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 218 (322)
T 2i1q_A 177 TFVARAYN-SDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFR 218 (322)
T ss_dssp EEEEECSS-HHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHH
T ss_pred EEEEeCCC-HHHHHHHHHHHHHHHhhccCccEEEEECcHHHHH
Confidence 000111 1211111111 0111225678999999998853
No 167
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.09 E-value=0.003 Score=55.81 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~ 171 (517)
..++|.|+||+||||+++.+++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3688999999999999999876
No 168
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.05 E-value=0.0042 Score=55.46 Aligned_cols=29 Identities=28% Similarity=0.517 Sum_probs=25.0
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 147 EKAGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 147 ~~~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
..+..++|.|+||+||||+++.++..+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 34567899999999999999999988764
No 169
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.02 E-value=0.0049 Score=58.20 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=22.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
+..++|.|+||+||||+++.++..+.
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45789999999999999999987753
No 170
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.02 E-value=0.0045 Score=55.33 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~ 172 (517)
.+..++|+|+||+||||+++.+++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999876
No 171
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.00 E-value=0.013 Score=57.02 Aligned_cols=93 Identities=19% Similarity=0.202 Sum_probs=49.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHH-HHHHHHHHHhCCCCCC-CCCCCHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTS-EIFSKILLKLQPRKKL-NGSTSPLQYLQ 226 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~-~i~~~i~~~l~~~~~~-~~~~~~~~~l~ 226 (517)
+..+.|.|++|+||||++..++..+... + ..+..+++....... .-+......++-.... ..+..+...+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~----g---~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~ 176 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDE----G---KSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAF 176 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT----T---CCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhc----C---CEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHH
Confidence 4468899999999999999999887542 2 245666665443211 1112223333321111 11233333322
Q ss_pred HHHHhhhccCCCceEEEEEeCcchh
Q 010136 227 NLYSQKLHSSVMKMMLIIADELDYL 251 (517)
Q Consensus 227 ~~~~~~~~~~~~~~~vI~iDEiD~L 251 (517)
..+.... ...+-+|+||+.-.+
T Consensus 177 ~al~~a~---~~~~dvvIiDtpg~~ 198 (306)
T 1vma_A 177 DAVAHAL---ARNKDVVIIDTAGRL 198 (306)
T ss_dssp HHHHHHH---HTTCSEEEEEECCCC
T ss_pred HHHHHHH---hcCCCEEEEECCCch
Confidence 2232111 234568999998753
No 172
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.99 E-value=0.005 Score=55.75 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
+..++|.|+||+||||+++.+++.++
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999988763
No 173
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.98 E-value=0.0047 Score=56.84 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.+..++|.|+||+||||+++.+++.++
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456799999999999999999988763
No 174
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.98 E-value=0.0046 Score=55.52 Aligned_cols=27 Identities=33% Similarity=0.573 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.+..++|.|+||+||||+++.+++.++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999988763
No 175
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=95.96 E-value=0.0031 Score=49.10 Aligned_cols=73 Identities=18% Similarity=0.181 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhh
Q 010136 308 SKDQIIRILQERLMELSYIVFQPQALELCARKVAAASG-DMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQA 386 (517)
Q Consensus 308 ~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~G-d~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (517)
+.++..+||+..+.+.+. -++-.++.+|+.+.+++| |+. .+|+.|+..|.++...
T Consensus 2 d~~~R~~Il~~~~~~~~~--~~dvdl~~lA~~t~G~SGADl~---~l~~eAa~~a~r~~~~------------------- 57 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSV--ERGIRWELISRLCPNSTGAELR---SVCTEAGMFAIRARRK------------------- 57 (88)
T ss_dssp CSSHHHHHHHHHHTTSCB--CSCCCHHHHHHTCSSCCHHHHH---HHHHHHHHHHHHHSCS-------------------
T ss_pred CHHHHHHHHHHHHCCCCC--CCccCHHHHHHHcCCCcHHHHH---HHHHHHHHHHHHhccc-------------------
Confidence 557788999988776532 123347888886655665 444 7999999988887654
Q ss_pred hhhhhccCccccHHHHHHHHHHhccCh
Q 010136 387 ASAFEFFNSQVRVDHMAVALSNTFKSP 413 (517)
Q Consensus 387 ~~~~~~~~~~Vt~~~v~~a~~~~~~~~ 413 (517)
.|+.+||..|+.++....
T Consensus 58 ---------~i~~~df~~Al~~v~~~~ 75 (88)
T 3vlf_B 58 ---------VATEKDFLKAVDKVISGY 75 (88)
T ss_dssp ---------SBCHHHHHHHHHHHTC--
T ss_pred ---------cCCHHHHHHHHHHHhcCc
Confidence 799999999999987554
No 176
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.96 E-value=0.0044 Score=56.16 Aligned_cols=25 Identities=36% Similarity=0.489 Sum_probs=22.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
+..++|.|++|+||||+++.+++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998876
No 177
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.95 E-value=0.0049 Score=56.25 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=24.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 147 EKAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 147 ~~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
..+..+.|.||+|+||||+++.++..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3455788999999999999999988876
No 178
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.93 E-value=0.0048 Score=56.78 Aligned_cols=26 Identities=38% Similarity=0.641 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..++|.||||+||+|.++.+++.+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46678999999999999999998775
No 179
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.93 E-value=0.0035 Score=55.88 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
+..++|.|+||+||||+++.+++.++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34689999999999999999987753
No 180
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.93 E-value=0.0033 Score=55.14 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=19.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~ 172 (517)
..++|.|+||+||||+++.+ +.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 36889999999999999998 44
No 181
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.91 E-value=0.0038 Score=55.87 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=21.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~ 172 (517)
.+..++|.|+||+||||+++.++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3557899999999999999998764
No 182
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.89 E-value=0.0047 Score=56.44 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.++|.||||+||+|.++.+++.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998875
No 183
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.87 E-value=0.056 Score=56.11 Aligned_cols=74 Identities=16% Similarity=0.191 Sum_probs=45.8
Q ss_pred eEEEEEeCcchhcccC----chHHHHHhccCCCCCCcEEEEEEECCCCcchhhcccccccCCCceEEEeCCCCHHHHHHH
Q 010136 240 MMLIIADELDYLITRD----RAVLHDLFMLTTFPFSRFILIGIANAIDLADRFLPRLQSMNCKPLVVTFRAYSKDQIIRI 315 (517)
Q Consensus 240 ~~vI~iDEiD~L~~~~----~~~L~~l~~~~~~~~~~v~lI~ian~~~~~~~l~~~l~sr~~~~~~i~f~p~~~~e~~~I 315 (517)
.++|+|||+..+.... .+.|..|.... ....+.+|.++...+ .+.+...+++. + ..+|.|.--+..+...|
T Consensus 298 ~ivlvIDE~~~ll~~~~~~~~~~l~~Lar~g--Ra~GI~LIlaTQrp~-~dvl~~~i~~n-~-~~RI~lrv~s~~dsr~i 372 (512)
T 2ius_A 298 YIVVLVDEFADLMMTVGKKVEELIARLAQKA--RAAGIHLVLATQRPS-VDVITGLIKAN-I-PTRIAFTVSSKIDSRTI 372 (512)
T ss_dssp EEEEEEETHHHHHHHHHHHHHHHHHHHHHHC--GGGTEEEEEEESCCC-TTTSCHHHHHH-C-CEEEEECCSSHHHHHHH
T ss_pred cEEEEEeCHHHHHhhhhHHHHHHHHHHHHHh--hhCCcEEEEEecCCc-cccccHHHHhh-c-CCeEEEEcCCHHHHHHh
Confidence 3699999998776421 23343443332 223667777777643 12244455554 4 45899999999999888
Q ss_pred HHH
Q 010136 316 LQE 318 (517)
Q Consensus 316 L~~ 318 (517)
+..
T Consensus 373 lg~ 375 (512)
T 2ius_A 373 LDQ 375 (512)
T ss_dssp HSS
T ss_pred cCC
Confidence 753
No 184
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.87 E-value=0.046 Score=53.58 Aligned_cols=28 Identities=25% Similarity=0.510 Sum_probs=24.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
.+..+.|.||+|+||||+++.++..+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4557889999999999999999987754
No 185
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.87 E-value=0.0042 Score=56.50 Aligned_cols=26 Identities=35% Similarity=0.560 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..++|+||||+||||+++.++..+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45679999999999999999998765
No 186
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.86 E-value=0.0054 Score=54.09 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
+..++|.|++|+||||+++.++..+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4578999999999999999998765
No 187
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.86 E-value=0.0045 Score=55.73 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=23.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
+..++|.|+||+||||+++.+++.++
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999988764
No 188
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.86 E-value=0.0049 Score=54.14 Aligned_cols=25 Identities=16% Similarity=0.329 Sum_probs=22.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
..++|.|+||+||||+++.+++.++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988764
No 189
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.85 E-value=0.0049 Score=55.14 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
+..++|.|+||+||||+++.+++.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999998765
No 190
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.84 E-value=0.012 Score=55.26 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..++|.|+||+||||+++.+++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998775
No 191
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.84 E-value=0.0077 Score=65.09 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
.+..+|.||||||||+++-.++..+..
T Consensus 205 ~~~~lI~GPPGTGKT~ti~~~I~~l~~ 231 (646)
T 4b3f_X 205 KELAIIHGPPGTGKTTTVVEIILQAVK 231 (646)
T ss_dssp SSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 357899999999999998877766653
No 192
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.83 E-value=0.0053 Score=55.82 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=23.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
+..++|.|+||+||||+++.+++.+.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 35689999999999999999988775
No 193
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.83 E-value=0.0057 Score=55.69 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=24.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
+..++|.|+||+||||+++.+++.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 567999999999999999999988764
No 194
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.83 E-value=0.035 Score=55.16 Aligned_cols=97 Identities=8% Similarity=0.066 Sum_probs=55.9
Q ss_pred hccCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCC-CCCCCHH
Q 010136 144 LEEEKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKL-NGSTSPL 222 (517)
Q Consensus 144 l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~-~~~~~~~ 222 (517)
+.-+.+..+.|+|++|+|||++++.+++.+.... +.+.++++-+..- ..+ ...+...+...... .....+.
T Consensus 169 ~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~-----~~v~~I~~lIGER--~~E-v~~~~~~~~~~vV~atadep~~ 240 (422)
T 3ice_A 169 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNH-----PDCVLMVLLIDER--PEE-VTEMQRLVKGEVVASTFDEPAS 240 (422)
T ss_dssp SCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHC-----TTSEEEEEEESSC--HHH-HHHHHTTCSSEEEEECTTSCHH
T ss_pred eeecCCcEEEEecCCCCChhHHHHHHHHHHhhcC-----CCeeEEEEEecCC--hHH-HHHHHHHhCeEEEEeCCCCCHH
Confidence 3345678999999999999999999988876422 2245666654432 222 22233333211000 1122222
Q ss_pred HHH---------HHHHHhhhccCCCceEEEEEeCcchhcc
Q 010136 223 QYL---------QNLYSQKLHSSVMKMMLIIADELDYLIT 253 (517)
Q Consensus 223 ~~l---------~~~~~~~~~~~~~~~~vI~iDEiD~L~~ 253 (517)
..+ .++|. ..++.++|++|++..++.
T Consensus 241 ~r~~~a~~alt~AEyfr-----d~G~dVLil~DslTR~A~ 275 (422)
T 3ice_A 241 RHVQVAEMVIEKAKRLV-----EHKKDVIILLDSITRLAR 275 (422)
T ss_dssp HHHHHHHHHHHHHHHHH-----HTSCEEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----hcCCCEEEEEeCchHHHH
Confidence 222 23333 357789999999988763
No 195
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.83 E-value=0.0053 Score=56.54 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.+..++|.|+||+||||+++.+++.++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356799999999999999999988763
No 196
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.79 E-value=0.0064 Score=55.41 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
.+..++|.|+||+||||+++.+++.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3567999999999999999999988764
No 197
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.77 E-value=0.075 Score=51.29 Aligned_cols=94 Identities=16% Similarity=0.114 Sum_probs=52.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHH-HHHHHHHHHhCCCCCC-CCCCCHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTS-EIFSKILLKLQPRKKL-NGSTSPLQYLQ 226 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~-~i~~~i~~~l~~~~~~-~~~~~~~~~l~ 226 (517)
+..+.+.|++|+||||++..++..+... + .++..+++....... ..+.......+-..-. ..+..+.+.+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~----g---~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~ 170 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK----G---FKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAK 170 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT----T---CCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC----C---CeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHH
Confidence 3468899999999999999999887542 2 256777776554322 2233334443322111 11234444444
Q ss_pred HHHHhhhccCCCceEEEEEeCcchhc
Q 010136 227 NLYSQKLHSSVMKMMLIIADELDYLI 252 (517)
Q Consensus 227 ~~~~~~~~~~~~~~~vI~iDEiD~L~ 252 (517)
..+... .....-+|+||=.-.+.
T Consensus 171 ~~l~~~---~~~~~D~ViIDTpg~~~ 193 (297)
T 1j8m_F 171 RGVEKF---LSEKMEIIIVDTAGRHG 193 (297)
T ss_dssp HHHHHH---HHTTCSEEEEECCCSCC
T ss_pred HHHHHH---HhCCCCEEEEeCCCCcc
Confidence 444421 01234588999876654
No 198
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.76 E-value=0.0057 Score=56.00 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.++|.|+||+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998775
No 199
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.75 E-value=0.0031 Score=55.97 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=18.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
+..++|.|+||+||||+++.+++.++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999987654
No 200
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.75 E-value=0.0061 Score=54.64 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
..|+|+||+|+||||+++.+++..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999987764
No 201
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.73 E-value=0.059 Score=50.11 Aligned_cols=19 Identities=26% Similarity=0.233 Sum_probs=16.3
Q ss_pred CeEEEEcCCCCcHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEK 168 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~ 168 (517)
.++++.+|+|+|||.+.-.
T Consensus 67 ~~~l~~apTGsGKT~~~~l 85 (242)
T 3fe2_A 67 LDMVGVAQTGSGKTLSYLL 85 (242)
T ss_dssp CCEEEEECTTSCHHHHHHH
T ss_pred CCEEEECCCcCHHHHHHHH
Confidence 6899999999999988543
No 202
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.71 E-value=0.0074 Score=56.13 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=23.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.+..++|.|+||+||||+++.+++.++
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999988764
No 203
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.71 E-value=0.0058 Score=57.75 Aligned_cols=24 Identities=13% Similarity=0.037 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.++|.||||+||||+++.+++.++
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 578999999999999999988763
No 204
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.68 E-value=0.0073 Score=53.72 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
+..+.|+||+|+||||+++.++..+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4578899999999999999987754
No 205
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.68 E-value=0.0071 Score=57.35 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=23.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
+..++|.|+||+||||+++.+++.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~ 30 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSK 30 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 457899999999999999999988753
No 206
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.65 E-value=0.0063 Score=53.13 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.++|.|+||+||||+++.+++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999988764
No 207
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.64 E-value=0.0053 Score=56.25 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.++|.|+||+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997764
No 208
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.63 E-value=0.015 Score=52.16 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=21.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
.+.|.|++|+||||+++.+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999887743
No 209
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.62 E-value=0.017 Score=51.53 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=22.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
.+.|.|+||+||||+++.+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999988753
No 210
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.61 E-value=0.0078 Score=54.94 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..+.|+||+|+||||+++.++..+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45678899999999999999997764
No 211
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.61 E-value=0.0064 Score=54.28 Aligned_cols=25 Identities=24% Similarity=0.523 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
+..++|.|+||+||||+++.+++.+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3478999999999999999998765
No 212
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.61 E-value=0.0073 Score=54.50 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.++|.|++|+||||+++.+++.++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 578999999999999999988764
No 213
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.59 E-value=0.0058 Score=56.53 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=22.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..++|.|+||+||||+++.+++.+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34679999999999999999998765
No 214
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.57 E-value=0.034 Score=61.19 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=19.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~ 171 (517)
...+++.||+|+|||+++..++.
T Consensus 109 ~~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 109 NQIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999997777643
No 215
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.52 E-value=0.0073 Score=55.46 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
+..++|.|+||+||||+++.+++.++
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999988763
No 216
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.52 E-value=0.0086 Score=56.15 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.+..+.|.|++|+||||+++.+++.++
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999987653
No 217
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.51 E-value=0.039 Score=51.03 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=16.7
Q ss_pred CCeEEEEcCCCCcHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEK 168 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~ 168 (517)
+.++++.+|+|+|||.+.-.
T Consensus 62 ~~~~li~a~TGsGKT~~~~~ 81 (236)
T 2pl3_A 62 GKDVLGAAKTGSGKTLAFLV 81 (236)
T ss_dssp TCCEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEeCCCCcHHHHHHH
Confidence 36799999999999997544
No 218
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.51 E-value=0.081 Score=53.91 Aligned_cols=94 Identities=12% Similarity=0.205 Sum_probs=52.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHH-HHHHHHHHHhCCCCCC-CCCCCHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTS-EIFSKILLKLQPRKKL-NGSTSPLQYLQ 226 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~-~i~~~i~~~l~~~~~~-~~~~~~~~~l~ 226 (517)
+..++|+|++|+||||++-.++..+... .| .++..++|-...... ..+.......+-..-. ..+..+...+.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~---~G---~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~ 173 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREK---HK---KKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVN 173 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHT---SC---CCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHh---cC---CeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHH
Confidence 4578899999999999999999887642 13 357778887654322 2222223333221111 11233444445
Q ss_pred HHHHhhhccCCCceEEEEEeCcchh
Q 010136 227 NLYSQKLHSSVMKMMLIIADELDYL 251 (517)
Q Consensus 227 ~~~~~~~~~~~~~~~vI~iDEiD~L 251 (517)
..+... .....-++|||=.-.+
T Consensus 174 ~~l~~~---~~~~~D~VIIDTpG~l 195 (433)
T 2xxa_A 174 AALKEA---KLKFYDVLLVDTAGRL 195 (433)
T ss_dssp HHHHHH---HHTTCSEEEEECCCCC
T ss_pred HHHHHH---HhCCCCEEEEECCCcc
Confidence 555421 1123458889976554
No 219
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.50 E-value=0.0069 Score=54.80 Aligned_cols=26 Identities=31% Similarity=0.556 Sum_probs=22.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..++|.|+||+||||+++.+++.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34578999999999999999998764
No 220
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.48 E-value=0.031 Score=52.37 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~ 171 (517)
.-.|+|.|.||+|||++++.+..
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCcHHHHHHHHhC
Confidence 34799999999999999999864
No 221
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.43 E-value=0.021 Score=55.05 Aligned_cols=44 Identities=16% Similarity=0.241 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhc--cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHH
Q 010136 133 QKKVLEFCKKNLE--EEKAGSLYVCGCPGTGKSLSMEKVQHYLVDW 176 (517)
Q Consensus 133 ~~~l~~~L~~~l~--~~~~~~lli~G~pGtGKT~l~~~v~~~l~~~ 176 (517)
++.|...+..... ...+..+.|.|++|+||||+++.++..+...
T Consensus 13 ~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 13 IEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp HHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 3344444444322 2334568899999999999999999988753
No 222
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.40 E-value=0.011 Score=53.48 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..+.|.||+|+||||+++.++..+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34578899999999999999987653
No 223
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=95.40 E-value=0.061 Score=48.38 Aligned_cols=18 Identities=28% Similarity=0.220 Sum_probs=15.7
Q ss_pred CeEEEEcCCCCcHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSME 167 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~ 167 (517)
.++++.+|+|+|||.+.-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 689999999999997654
No 224
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.39 E-value=0.02 Score=57.26 Aligned_cols=27 Identities=15% Similarity=0.057 Sum_probs=23.2
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 147 EKAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 147 ~~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
..+..++|+||||+||||+++.++..+
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345689999999999999999998753
No 225
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.38 E-value=0.0096 Score=54.91 Aligned_cols=25 Identities=16% Similarity=0.078 Sum_probs=19.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
+...+++|+.|+|||+.+-..+...
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~ 43 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRF 43 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHH
Confidence 4467789999999998776665554
No 226
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.37 E-value=0.012 Score=53.27 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..+.|+||+|+||||+++.+++.+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 46688999999999999999988654
No 227
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.36 E-value=0.018 Score=52.04 Aligned_cols=20 Identities=30% Similarity=0.350 Sum_probs=16.5
Q ss_pred CCeEEEEcCCCCcHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEK 168 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~ 168 (517)
+.++++.+|+|+|||.++-.
T Consensus 38 ~~~~li~~~TGsGKT~~~~~ 57 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAFAL 57 (207)
T ss_dssp TCCEEEECCTTSCHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHH
Confidence 36799999999999987433
No 228
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.35 E-value=0.011 Score=53.56 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..+.|.|++|+||||+++.++..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 35678999999999999999987654
No 229
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.35 E-value=0.009 Score=54.66 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.++|.|+||+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998875
No 230
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.35 E-value=0.04 Score=54.13 Aligned_cols=51 Identities=14% Similarity=0.145 Sum_probs=36.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILL 207 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~ 207 (517)
.+..++|.|+||+|||+++..++..+.. .+ ..++|++... +..++...+..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~----~g---~~Vl~fSlEm--s~~ql~~Rlls 95 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN----DD---RGVAVFSLEM--SAEQLALRALS 95 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH----TT---CEEEEEESSS--CHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH----cC---CeEEEEeCCC--CHHHHHHHHHH
Confidence 3557889999999999999999877654 22 3577887643 45666555543
No 231
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.34 E-value=0.013 Score=53.56 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=24.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.+..++|.|++|+||||+++.+++.+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456789999999999999999998886
No 232
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=95.33 E-value=0.029 Score=51.60 Aligned_cols=20 Identities=40% Similarity=0.394 Sum_probs=16.5
Q ss_pred CCeEEEEcCCCCcHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEK 168 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~ 168 (517)
+.++++.+|+|+|||.+.-.
T Consensus 57 ~~~~l~~apTGsGKT~~~~l 76 (228)
T 3iuy_A 57 GIDLIVVAQTGTGKTLSYLM 76 (228)
T ss_dssp TCCEEEECCTTSCHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHH
Confidence 46899999999999987543
No 233
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=95.32 E-value=0.0034 Score=48.18 Aligned_cols=75 Identities=19% Similarity=0.180 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhh
Q 010136 307 YSKDQIIRILQERLMELSYIVFQPQALELCARKVAAASG-DMRKALSVCRSAIEILEAEMRESVSKMNSASAEQGLFDQQ 385 (517)
Q Consensus 307 ~~~~e~~~IL~~rl~~~~~~~~~~~ai~~ia~~~~~~~G-d~R~al~ll~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 385 (517)
++.+++.+||+..+.+++. -++-.++.+|+.+.+++| |+. .+|+.|+..|.++...
T Consensus 1 ~d~~~R~~Il~~~l~~~~~--~~~vdl~~la~~t~G~SGADi~---~l~~eA~~~a~~~~~~------------------ 57 (83)
T 3aji_B 1 MDRRQKRLIFSTITSKMNL--SEEVDLEDYVARPDKISGADIN---SICQESGMLAVRENRY------------------ 57 (83)
T ss_dssp CCHHHHHHHHHHHHTTSCB--CTTCCTHHHHTSSCCCCHHHHH---HHHHHHHHGGGTSCCS------------------
T ss_pred CCHHHHHHHHHHHhCCCCC--CcccCHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHhccC------------------
Confidence 4678999999988876532 123346777776555555 444 6899998877765433
Q ss_pred hhhhhhccCccccHHHHHHHHHHhccChh
Q 010136 386 AASAFEFFNSQVRVDHMAVALSNTFKSPV 414 (517)
Q Consensus 386 ~~~~~~~~~~~Vt~~~v~~a~~~~~~~~~ 414 (517)
.|+.+||..|+.++.++..
T Consensus 58 ----------~i~~~df~~Al~~~~ps~~ 76 (83)
T 3aji_B 58 ----------IVLAKDFEKAYKTVIKKDE 76 (83)
T ss_dssp ----------SBCHHHHHHHHHHHCC---
T ss_pred ----------CcCHHHHHHHHHHHccCch
Confidence 7999999999999887643
No 234
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.32 E-value=0.011 Score=52.37 Aligned_cols=27 Identities=26% Similarity=0.580 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.+..+.|.|++|+||||+++.++..+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345788999999999999999988774
No 235
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.31 E-value=0.084 Score=54.03 Aligned_cols=39 Identities=15% Similarity=0.061 Sum_probs=30.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCC
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTS 194 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~ 194 (517)
+..++|.|+||+|||+++..++..+... | ..+++++...
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~----g---~~vl~fSlEm 235 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN----D---DVVNLHSLEM 235 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT----T---CEEEEECSSS
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc----C---CEEEEEECCC
Confidence 4578899999999999999998776532 2 3578887654
No 236
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=95.31 E-value=0.082 Score=51.07 Aligned_cols=20 Identities=30% Similarity=0.410 Sum_probs=16.9
Q ss_pred CCCCeEEEEcCCCCcHHHHH
Q 010136 147 EKAGSLYVCGCPGTGKSLSM 166 (517)
Q Consensus 147 ~~~~~lli~G~pGtGKT~l~ 166 (517)
+.+.++++++|+|+|||...
T Consensus 129 ~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 129 EPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp SSCCCEEEECCTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCccHHH
Confidence 34578999999999999874
No 237
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.31 E-value=0.008 Score=54.29 Aligned_cols=25 Identities=12% Similarity=0.188 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
+..++|.|++|+||||+++.+++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999998765
No 238
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=95.28 E-value=0.094 Score=48.69 Aligned_cols=18 Identities=28% Similarity=0.504 Sum_probs=15.6
Q ss_pred CeEEEEcCCCCcHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSME 167 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~ 167 (517)
.++++.+|+|+|||.+.-
T Consensus 67 ~~~l~~a~TGsGKT~~~~ 84 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAFS 84 (245)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCCcHHHHHH
Confidence 579999999999998743
No 239
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.25 E-value=0.011 Score=54.52 Aligned_cols=23 Identities=22% Similarity=0.353 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.++|.|+||+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 240
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.23 E-value=0.012 Score=54.13 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=22.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
..+.|.|++|+||||+++.+++.++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999987653
No 241
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.22 E-value=0.0092 Score=53.33 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
..+.|.||+|+||||+++.++..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999987653
No 242
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.22 E-value=0.012 Score=53.31 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
+..+.|.||+|+||||+++.++..+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4578999999999999999998765
No 243
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.17 E-value=0.011 Score=52.84 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~ 171 (517)
.+.|.||+|+||||+++.++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999975
No 244
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=95.13 E-value=0.028 Score=51.53 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=14.9
Q ss_pred CeEEEEcCCCCcHHHH
Q 010136 150 GSLYVCGCPGTGKSLS 165 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l 165 (517)
.++++.+|+|+|||.+
T Consensus 52 ~~~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 52 HDVLAQAQSGTGKTGT 67 (224)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CCEEEECCCCCcHHHH
Confidence 6799999999999987
No 245
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.07 E-value=0.013 Score=57.05 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
..++|+||+|+|||++++.+++.+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998875
No 246
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.06 E-value=0.044 Score=57.14 Aligned_cols=50 Identities=12% Similarity=-0.002 Sum_probs=34.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKIL 206 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~ 206 (517)
+..++|.|+||+|||+++..++..+... .+ ..++|++... +..++...+.
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~---~g---~~vl~~s~E~--s~~~l~~r~~ 291 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTA---MG---KKVGLAMLEE--SVEETAEDLI 291 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTT---SC---CCEEEEESSS--CHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHh---cC---CcEEEEeccC--CHHHHHHHHH
Confidence 4468899999999999999998765421 12 2578887644 4556555543
No 247
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=95.05 E-value=0.38 Score=44.72 Aligned_cols=19 Identities=21% Similarity=0.490 Sum_probs=16.1
Q ss_pred CeEEEEcCCCCcHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEK 168 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~ 168 (517)
.++++.+|+|+|||.+.-.
T Consensus 61 ~~~l~~a~TGsGKT~~~~~ 79 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFLI 79 (253)
T ss_dssp CCEEEECCTTSSHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 6799999999999987543
No 248
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.01 E-value=0.014 Score=55.04 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=23.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
+..++|.|++|+||||+++.++..++
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998764
No 249
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=94.99 E-value=0.039 Score=50.94 Aligned_cols=18 Identities=33% Similarity=0.344 Sum_probs=15.7
Q ss_pred CCeEEEEcCCCCcHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSM 166 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~ 166 (517)
+.++++.+|+|+|||.+.
T Consensus 61 ~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 61 GLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp TCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCcHHHHH
Confidence 367999999999999874
No 250
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=94.96 E-value=0.031 Score=52.91 Aligned_cols=19 Identities=26% Similarity=0.406 Sum_probs=16.1
Q ss_pred CeEEEEcCCCCcHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEK 168 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~ 168 (517)
.++++.+|.|+|||.++-.
T Consensus 92 ~~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CCCEECCCTTSCHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHH
Confidence 5799999999999987543
No 251
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=94.94 E-value=0.12 Score=48.29 Aligned_cols=20 Identities=15% Similarity=0.177 Sum_probs=16.7
Q ss_pred CCeEEEEcCCCCcHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEK 168 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~ 168 (517)
+.++++.+|+|+|||.+.-.
T Consensus 80 ~~~~lv~a~TGsGKT~~~~~ 99 (249)
T 3ber_A 80 GRDIIGLAETGSGKTGAFAL 99 (249)
T ss_dssp TCCEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEcCCCCCchhHhHH
Confidence 36799999999999987543
No 252
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.92 E-value=0.015 Score=53.95 Aligned_cols=26 Identities=31% Similarity=0.206 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
+..+.|.||+|+||||+++.+++.++
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999988763
No 253
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.91 E-value=0.04 Score=65.00 Aligned_cols=91 Identities=14% Similarity=0.038 Sum_probs=58.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCC---CCCCCHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKL---NGSTSPLQYL 225 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~---~~~~~~~~~l 225 (517)
+..+.||||+|+|||+++..++.+.... | -..++++.....++.- +..++..... ......++.|
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~----g---~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l 1498 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQRE----G---KTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQAL 1498 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT----T---CCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc----C---CeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHH
Confidence 4579999999999999999988765432 2 1478999877655442 5666543221 1112224444
Q ss_pred HHHHHhhhccCCCceEEEEEeCcchhccc
Q 010136 226 QNLYSQKLHSSVMKMMLIIADELDYLITR 254 (517)
Q Consensus 226 ~~~~~~~~~~~~~~~~vI~iDEiD~L~~~ 254 (517)
+-... .-+...+.+|+||.+..|..+
T Consensus 1499 ~~~~~---~~~s~~~~~vvvDsv~al~~~ 1524 (1706)
T 3cmw_A 1499 EICDA---LARSGAVDVIVVDSVAALTPK 1524 (1706)
T ss_dssp HHHHH---HHHHTCCSEEEESCSTTCCCT
T ss_pred HHHHH---HHHcCCCCEEEEccHHhCCcc
Confidence 43222 112556789999999999875
No 254
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=94.90 E-value=0.038 Score=51.27 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=15.6
Q ss_pred CeEEEEcCCCCcHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSME 167 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~ 167 (517)
.++++.+|+|+|||.+.-
T Consensus 68 ~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 68 YDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp CCEEECCCSSHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHH
Confidence 679999999999998743
No 255
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=94.89 E-value=0.1 Score=39.51 Aligned_cols=74 Identities=19% Similarity=0.192 Sum_probs=58.4
Q ss_pred hccCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhcCceeeccCCceeEEEeec
Q 010136 418 IKSLPQHQQILLCSAVKFFRGGKKDMTVGELNKSYMNICKTSLIPPVGTLEFFSMCRVLHDQGVLKVGRDDKLKRVTLKA 497 (517)
Q Consensus 418 i~~L~~~~k~iL~al~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~L~~~glI~~~~~~~~~~~~l~~ 497 (517)
+.+|+..+..||..+.. ...++..+|.+.... . +.++.+.+..+++.|++.|+|...+.|+...|.+.+
T Consensus 4 ~~~lt~~e~~vL~~L~~-----~~~~t~~ei~~~l~~---~---~~~s~~Tv~~~l~rL~~kGlv~r~~~gr~~~y~~~~ 72 (82)
T 1p6r_A 4 IPQISDAELEVMKVIWK-----HSSINTNEVIKELSK---T---STWSPKTIQTMLLRLIKKGALNHHKEGRVFVYTPNI 72 (82)
T ss_dssp CCCCCHHHHHHHHHHHT-----SSSEEHHHHHHHHHH---H---SCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESC
T ss_pred cCCCCHHHHHHHHHHHc-----CCCCCHHHHHHHHhh---c---CCccHHHHHHHHHHHHHCCCeEEEecCCEEEEEeec
Confidence 35789999999987763 246899999775432 1 357889999999999999999987778888888888
Q ss_pred CHHHH
Q 010136 498 DESDI 502 (517)
Q Consensus 498 ~~~~i 502 (517)
+.++.
T Consensus 73 ~~~~~ 77 (82)
T 1p6r_A 73 DESDY 77 (82)
T ss_dssp SSSTT
T ss_pred CHHHH
Confidence 87754
No 256
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.84 E-value=0.052 Score=52.38 Aligned_cols=94 Identities=15% Similarity=0.148 Sum_probs=51.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHH--HHHHHHHhCCCCCCC-CCCCHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEI--FSKILLKLQPRKKLN-GSTSPLQYL 225 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i--~~~i~~~l~~~~~~~-~~~~~~~~l 225 (517)
+..+.|+|++|+||||++..++..+... + ..+..+++... ..... +..+....+-..... ....+.+.+
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~----~---~~v~l~~~d~~-~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~ 169 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK----G---RRPLLVAADTQ-RPAAREQLRLLGEKVGVPVLEVMDGESPESIR 169 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHT----T---CCEEEEECCSS-CHHHHHHHHHHHHHHTCCEEECCTTCCHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc----C---CeEEEecCCcc-cHhHHHHHHHhcccCCeEEEEcCCCCCHHHHH
Confidence 4467888999999999999999877542 2 24556665443 23221 223334433221111 123344443
Q ss_pred HHHHHhhhccCCCceEEEEEeCcchhcc
Q 010136 226 QNLYSQKLHSSVMKMMLIIADELDYLIT 253 (517)
Q Consensus 226 ~~~~~~~~~~~~~~~~vI~iDEiD~L~~ 253 (517)
+..+.... ...+-+|+||+.-.+..
T Consensus 170 ~~~l~~~~---~~~~D~viiDtpp~~~~ 194 (295)
T 1ls1_A 170 RRVEEKAR---LEARDLILVDTAGRLQI 194 (295)
T ss_dssp HHHHHHHH---HHTCCEEEEECCCCSSC
T ss_pred HHHHHHHH---hCCCCEEEEeCCCCccc
Confidence 44443210 12356899999866543
No 257
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.81 E-value=0.026 Score=51.55 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=23.9
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 147 EKAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 147 ~~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.....+.|.|.+|+|||+++..++..+.
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3567899999999999999999987653
No 258
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.79 E-value=0.017 Score=58.79 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
+..++|+|+||+||||+++.+++.+
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhc
Confidence 4568899999999999999987654
No 259
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.78 E-value=0.0099 Score=54.19 Aligned_cols=112 Identities=13% Similarity=0.072 Sum_probs=50.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRKKLNGSTSPLQYLQN 227 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~ 227 (517)
.+...+++|+.|+|||+.+-..+..+.. .+. .++.++.... +.+. ...+...++....... .....+
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~----~g~---kvli~kp~~D-~R~~-~~~I~Sr~G~~~~a~~----v~~~~d 93 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIY----AKQ---KVVVFKPAID-DRYH-KEKVVSHNGNAIEAIN----ISKASE 93 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHH----TTC---CEEEEEEC-------------CBTTBCCEEEE----ESSGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHH----cCC---ceEEEEeccC-Ccch-hhhHHHhcCCceeeEE----eCCHHH
Confidence 4567789999999999955444444432 222 3444443221 1111 1123333322111000 001112
Q ss_pred HHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhccCCCCCCcEEEEEEEC
Q 010136 228 LYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRFILIGIAN 280 (517)
Q Consensus 228 ~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~~~~~~~~~v~lI~ian 280 (517)
++.. . .....+|+|||++.|...--+.+..+.+ .+..|++-|.-+
T Consensus 94 i~~~--i--~~~~dvV~IDEaQFf~~~~v~~l~~la~----~gi~Vi~~GLd~ 138 (219)
T 3e2i_A 94 IMTH--D--LTNVDVIGIDEVQFFDDEIVSIVEKLSA----DGHRVIVAGLDM 138 (219)
T ss_dssp GGGS--C--CTTCSEEEECCGGGSCTHHHHHHHHHHH----TTCEEEEEEESB
T ss_pred HHHH--H--hcCCCEEEEechhcCCHHHHHHHHHHHH----CCCEEEEeeccc
Confidence 2220 1 2345699999999986432234444432 345566655433
No 260
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.76 E-value=0.033 Score=51.00 Aligned_cols=28 Identities=29% Similarity=0.381 Sum_probs=23.8
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 147 EKAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 147 ~~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.....+.|.|.+|+|||+++..++..+.
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4567889999999999999999987653
No 261
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=94.76 E-value=0.13 Score=51.41 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=17.2
Q ss_pred CCCeEEEEcCCCCcHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSME 167 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~ 167 (517)
.+.++++.+|+|+|||.++-
T Consensus 63 ~~~~~lv~apTGsGKT~~~~ 82 (412)
T 3fht_A 63 PPQNLIAQSQSGTGKTAAFV 82 (412)
T ss_dssp SCCCEEEECCTTSCHHHHHH
T ss_pred CCCeEEEECCCCchHHHHHH
Confidence 45789999999999998853
No 262
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.76 E-value=0.025 Score=49.72 Aligned_cols=27 Identities=30% Similarity=0.238 Sum_probs=23.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
...+.|.|++|+||||++..++..+..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 457889999999999999999988764
No 263
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.73 E-value=0.021 Score=52.62 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..+.|.||+|+||||+++.++..+
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45678899999999999999987764
No 264
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.67 E-value=0.023 Score=50.98 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=22.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
..+.|.|++|+||||+++.++..+.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3578999999999999999998875
No 265
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.66 E-value=0.16 Score=51.56 Aligned_cols=92 Identities=15% Similarity=0.167 Sum_probs=50.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHH--HHHHHHHhCCCCCC-CCCCCHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEI--FSKILLKLQPRKKL-NGSTSPLQYL 225 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i--~~~i~~~l~~~~~~-~~~~~~~~~l 225 (517)
+..+.|.|++|+||||++..++..+... + ..+..+.+... .+... +.......+-..-. ..+..+.+.+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~----g---~~Vllvd~D~~-r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~ 169 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK----G---RRPLLVAADTQ-RPAAREQLRLLGEKVGVPVLEVMDGESPESIR 169 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT----T---CCEEEEECCSS-CHHHHHHHHHHHHHHTCCEEECCTTCCHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc----C---CeEEEeecccc-CchhHHHHHHhcccCCccEEecCCCCCHHHHH
Confidence 4468889999999999999999887532 2 24666666443 33222 23334444322111 1123334444
Q ss_pred HHHHHhhhccCCCceEEEEEeCcchh
Q 010136 226 QNLYSQKLHSSVMKMMLIIADELDYL 251 (517)
Q Consensus 226 ~~~~~~~~~~~~~~~~vI~iDEiD~L 251 (517)
...+... .....-++|||=.-.+
T Consensus 170 ~~~l~~~---~~~~~DvVIIDTaG~l 192 (425)
T 2ffh_A 170 RRVEEKA---RLEARDLILVDTAGRL 192 (425)
T ss_dssp HHHHHHH---HHTTCSEEEEECCCCS
T ss_pred HHHHHHH---HHCCCCEEEEcCCCcc
Confidence 4444421 0123457888966554
No 266
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.64 E-value=0.03 Score=60.10 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.+..+|.||||||||+++..++..+.
T Consensus 195 ~~~~li~GppGTGKT~~~~~~i~~l~ 220 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTSATIVYHLA 220 (624)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999988877664
No 267
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.62 E-value=0.022 Score=53.96 Aligned_cols=29 Identities=31% Similarity=0.564 Sum_probs=24.8
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 147 EKAGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 147 ~~~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
..+..+.|.||+|+||||+++.++..+..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 35668999999999999999999887653
No 268
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.62 E-value=0.02 Score=51.69 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.+.|.|++|+||||+++.+++.++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 688999999999999999988764
No 269
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.62 E-value=0.018 Score=54.25 Aligned_cols=27 Identities=26% Similarity=0.230 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.+..+.|.||+|+||||+++.+++.|+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456799999999999999999988764
No 270
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=94.61 E-value=0.1 Score=49.73 Aligned_cols=42 Identities=17% Similarity=0.074 Sum_probs=29.0
Q ss_pred CCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 126 IVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 126 l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
+.-+..|.+.+..++.. ...+|.+|+|+|||.++-.++....
T Consensus 112 ~~l~~~Q~~ai~~~l~~-------~~~ll~~~tGsGKT~~~~~~~~~~~ 153 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVN-------RRRILNLPTSAGRSLIQALLARYYL 153 (282)
T ss_dssp CCCCHHHHHHHHHHHHH-------SEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHhc-------CCeEEEcCCCCCcHHHHHHHHHHHH
Confidence 34566666556555543 4568899999999999977765543
No 271
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.60 E-value=0.018 Score=52.08 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~ 171 (517)
.+.|.|++|+||||+++.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 588999999999999999987
No 272
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=94.60 E-value=0.1 Score=47.60 Aligned_cols=19 Identities=26% Similarity=0.177 Sum_probs=16.1
Q ss_pred CeEEEEcCCCCcHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEK 168 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~ 168 (517)
.++++.+|+|+|||.+.-.
T Consensus 42 ~~~lv~a~TGsGKT~~~~~ 60 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYLL 60 (219)
T ss_dssp CCEEEECCSSHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 6799999999999987443
No 273
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.59 E-value=0.01 Score=54.00 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.+.|.|++|+||||+++.+++.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999988875
No 274
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.58 E-value=0.02 Score=49.83 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..+.|.||.|+||||+++.++..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45578899999999999999998876
No 275
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.55 E-value=0.016 Score=51.02 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=18.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEK 168 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~ 168 (517)
.+..+.|.||+|+||||+++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 455788999999999999995
No 276
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.55 E-value=0.021 Score=53.27 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~ 172 (517)
.+..+.|.||+|+||||+++.++..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999843
No 277
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.54 E-value=0.021 Score=52.41 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..+.|.||+|+||||+++.++..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45678899999999999999998754
No 278
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=94.54 E-value=0.26 Score=44.77 Aligned_cols=22 Identities=14% Similarity=0.084 Sum_probs=17.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~ 171 (517)
.++++.+|+|+|||.++-..+-
T Consensus 52 ~~~li~~~TGsGKT~~~~~~~~ 73 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVFVLATL 73 (220)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEECCCCCchhhhhhHHHH
Confidence 5799999999999987655443
No 279
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.54 E-value=0.021 Score=51.93 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.+..+.|.|++|+||||+++.++..+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345788999999999999999988764
No 280
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.54 E-value=0.02 Score=52.02 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..+.|.||+|+||||+++.++..+
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45678899999999999999998765
No 281
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.50 E-value=0.032 Score=54.45 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
+..+.|.||+|+||||+++.+...+.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 33688999999999999999877664
No 282
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.50 E-value=0.069 Score=52.52 Aligned_cols=24 Identities=17% Similarity=0.090 Sum_probs=19.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~ 172 (517)
..++++.+|+|+|||.++-..+-.
T Consensus 44 ~~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 44 EYNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp CSEEEEECCSSSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHHHHHH
Confidence 368999999999999987655433
No 283
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.49 E-value=0.021 Score=51.39 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~ 172 (517)
.+..+.|.|++|+||||+++.+++.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4557899999999999999998764
No 284
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.48 E-value=0.025 Score=52.44 Aligned_cols=27 Identities=30% Similarity=0.413 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.+..+.|.|+||+||||+++.+++.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 345788999999999999999988775
No 285
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=94.48 E-value=0.088 Score=54.20 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=28.7
Q ss_pred CCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 126 IVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 126 l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
+.-+..|.+.+..++. .+.++|.||+|+|||.++-.++..+
T Consensus 92 ~~l~~~Q~~ai~~i~~-------~~~~ll~~~TGsGKT~~~l~~i~~~ 132 (472)
T 2fwr_A 92 ISLRDYQEKALERWLV-------DKRGCIVLPTGSGKTHVAMAAINEL 132 (472)
T ss_dssp CCBCHHHHHHHHHHTT-------TTEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHh-------cCCEEEEeCCCCCHHHHHHHHHHHc
Confidence 4446666655554432 2469999999999999987776654
No 286
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.47 E-value=0.045 Score=50.83 Aligned_cols=49 Identities=12% Similarity=0.129 Sum_probs=31.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSK 204 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~ 204 (517)
.+..++|+|+||+|||+++..++...... .+ ..++|++... ++..+...
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~---~~---~~v~~~s~E~--~~~~~~~~ 77 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEE---YG---EPGVFVTLEE--RARDLRRE 77 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHH---HC---CCEEEEESSS--CHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh---cC---CCceeecccC--CHHHHHHH
Confidence 35578999999999999999887543221 12 2467777654 34554443
No 287
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.45 E-value=0.018 Score=54.24 Aligned_cols=27 Identities=26% Similarity=0.223 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.+..|.|.|++|+||||+++.+++.++
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345788999999999999999988764
No 288
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=94.41 E-value=0.09 Score=57.35 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=18.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQ 170 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~ 170 (517)
..+++++||+|+|||+.+-..+
T Consensus 46 ~~~~lv~apTGsGKT~~~~l~i 67 (715)
T 2va8_A 46 GNRLLLTSPTGSGKTLIAEMGI 67 (715)
T ss_dssp TCCEEEECCTTSCHHHHHHHHH
T ss_pred CCcEEEEcCCCCcHHHHHHHHH
Confidence 5789999999999999985443
No 289
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.38 E-value=0.021 Score=51.65 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~ 171 (517)
.+.|.|++|+||||+++.++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999865
No 290
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.33 E-value=0.022 Score=55.01 Aligned_cols=25 Identities=16% Similarity=0.370 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
+..++|+||+|+|||+++..+++.+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4568899999999999999998875
No 291
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.32 E-value=0.05 Score=57.05 Aligned_cols=120 Identities=14% Similarity=0.086 Sum_probs=64.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCC-------------CC
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPR-------------KK 214 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~-------------~~ 214 (517)
.+..++|.|++|+|||++++.++..+.. .|. .++++.... +...+...+ ..++.. ..
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~----~G~---~vi~~~~ee--~~~~l~~~~-~~~g~~~~~~~~~g~~~~~~~ 349 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACA----NKE---RAILFAYEE--SRAQLLRNA-YSWGMDFEEMERQNLLKIVCA 349 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHT----TTC---CEEEEESSS--CHHHHHHHH-HTTSCCHHHHHHTTSEEECCC
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHh----CCC---CEEEEEEeC--CHHHHHHHH-HHcCCCHHHHHhCCCEEEEEe
Confidence 4567889999999999999999876543 122 356666543 234443332 111110 00
Q ss_pred CCCCCCHHHHHHHHHHhhhccCCCceEEEEEeCcchhccc-----CchHHHHHhccCCCCCCcEEEEEEECCC
Q 010136 215 LNGSTSPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITR-----DRAVLHDLFMLTTFPFSRFILIGIANAI 282 (517)
Q Consensus 215 ~~~~~~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~-----~~~~L~~l~~~~~~~~~~v~lI~ian~~ 282 (517)
.+...+..+..+..+.. . ...++.+||||=+..|... ....++.++...... .+.+|.++...
T Consensus 350 ~p~~LS~g~~q~~~~a~-~--l~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~~~--g~tvilvsh~~ 417 (525)
T 1tf7_A 350 YPESAGLEDHLQIIKSE-I--NDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQE--EITGLFTNTSD 417 (525)
T ss_dssp CGGGSCHHHHHHHHHHH-H--HTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHT--TCEEEEEEECS
T ss_pred ccccCCHHHHHHHHHHH-H--HhhCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHHHhC--CCEEEEEECcc
Confidence 01112333333333331 1 1345789999966666554 345566666543222 34455555544
No 292
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.32 E-value=0.027 Score=55.95 Aligned_cols=28 Identities=32% Similarity=0.554 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
..+.++|.||+|+||||+++.++..+..
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccC
Confidence 4558999999999999999999988764
No 293
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=94.31 E-value=0.3 Score=48.90 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=16.6
Q ss_pred CeEEEEcCCCCcHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKV 169 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v 169 (517)
.++++.+|+|+|||.+.-..
T Consensus 75 ~~~lv~a~TGsGKT~~~~~~ 94 (410)
T 2j0s_A 75 RDVIAQSQSGTGKTATFSIS 94 (410)
T ss_dssp CCEEEECCTTSSHHHHHHHH
T ss_pred CCEEEECCCCCCchHHHHHH
Confidence 57999999999999776543
No 294
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=94.30 E-value=0.06 Score=54.95 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=19.6
Q ss_pred CCeEEEEcCCCCcHHHHH-HHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSM-EKVQHYL 173 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~-~~v~~~l 173 (517)
+.++++.||+|+|||..+ ..++..+
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~ 27 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREA 27 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 468999999999999986 5555443
No 295
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.30 E-value=0.036 Score=56.25 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=24.3
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 147 EKAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 147 ~~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
..++.++|.||+|+||||+++.++..+.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 3556789999999999999999988764
No 296
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=94.27 E-value=0.14 Score=55.80 Aligned_cols=122 Identities=18% Similarity=0.247 Sum_probs=60.8
Q ss_pred CCeEEEEcCCCCcHHHHHH-HHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHH--HHhCCCCCCCCC-----C-
Q 010136 149 AGSLYVCGCPGTGKSLSME-KVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKIL--LKLQPRKKLNGS-----T- 219 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~-~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~--~~l~~~~~~~~~-----~- 219 (517)
..+++++||+|+|||+++- .+++.+... + ..++++.... .-..+.+..+. ..++.......| .
T Consensus 39 ~~~~lv~apTGsGKT~~~~l~il~~~~~~----~---~~~l~i~P~r-aLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~ 110 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAEIAMVHRILTQ----G---GKAVYIVPLK-ALAEEKFQEFQDWEKIGLRVAMATGDYDSKDE 110 (720)
T ss_dssp TCEEEEECCGGGCHHHHHHHHHHHHHHHH----C---SEEEEECSSG-GGHHHHHHHTGGGGGGTCCEEEECSCSSCCCG
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhC----C---CEEEEEcCcH-HHHHHHHHHHHHHHhcCCEEEEecCCCCcccc
Confidence 5789999999999999884 444444321 1 3567766433 22344444442 111110000000 0
Q ss_pred ---------CHHHHHHHHHHhhhccCCCceEEEEEeCcchhccc-CchHHHHHhccCCCCCCcEEEEEEECCC
Q 010136 220 ---------SPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITR-DRAVLHDLFMLTTFPFSRFILIGIANAI 282 (517)
Q Consensus 220 ---------~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~-~~~~L~~l~~~~~~~~~~v~lI~ian~~ 282 (517)
.+.+.+..++... ...-....+|||||+|.+... ....+..++.... . .+-+|+.|-++
T Consensus 111 ~~~~~~Iiv~Tpe~l~~~~~~~-~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~-~--~~~ii~lSATl 179 (720)
T 2zj8_A 111 WLGKYDIIIATAEKFDSLLRHG-SSWIKDVKILVADEIHLIGSRDRGATLEVILAHML-G--KAQIIGLSATI 179 (720)
T ss_dssp GGGGCSEEEECHHHHHHHHHHT-CTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHB-T--TBEEEEEECCC
T ss_pred ccCCCCEEEECHHHHHHHHHcC-hhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhh-c--CCeEEEEcCCc
Confidence 0134444444421 111235679999999999763 3333444433221 1 34455555554
No 297
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.22 E-value=0.064 Score=52.15 Aligned_cols=28 Identities=25% Similarity=0.209 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
.+..+.|.||+|+||||+++.++..+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 4557889999999999999999887753
No 298
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.21 E-value=0.036 Score=48.94 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=23.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
...+.|.|++|+||||+++.++..+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 457889999999999999999887653
No 299
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.19 E-value=0.037 Score=57.48 Aligned_cols=58 Identities=9% Similarity=-0.030 Sum_probs=38.0
Q ss_pred hhcCcCCCCCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 115 EALHVSTAPSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 115 ~~l~~~~~p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
+.|.....|..-..|.+..+.+.+.... ....+..|+|.|.+|+||||+++.+++.|.
T Consensus 363 ~~Lr~G~~~P~~f~rpeV~~vLr~~~~~--~~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 363 RRLRVGGEIPEWFSYPEVVKILRESNPP--RPKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp HHHHHTCCCCTTTSCHHHHHHHHHHSCC--GGGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred HHHhCCCCCCccccChhhHHHHHHhccc--ccccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 3344444444455555544444443211 123456899999999999999999999986
No 300
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.18 E-value=0.022 Score=51.66 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
+..+.|.|++|+||||+++.++..+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4468899999999999999987653
No 301
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.17 E-value=0.08 Score=48.89 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDW 176 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~ 176 (517)
.+..|.|.|++|+||||+++.+++.+...
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 35578899999999999999999988754
No 302
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.16 E-value=0.033 Score=53.88 Aligned_cols=27 Identities=37% Similarity=0.561 Sum_probs=23.8
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 147 EKAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 147 ~~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
..+..+.|+||+|+||||+++.++..+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 356688999999999999999998876
No 303
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.10 E-value=0.026 Score=54.47 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~ 172 (517)
..++|.|+||+||||+++.+++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36889999999999999998774
No 304
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.10 E-value=0.046 Score=57.47 Aligned_cols=59 Identities=12% Similarity=0.144 Sum_probs=35.9
Q ss_pred HhhcCcCCCCCCCCCcHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 114 REALHVSTAPSTIVCREDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 114 ~~~l~~~~~p~~l~gRe~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
++.|.....+..-..+.+....+...... .-..+..++|.|++|+||||+++.++..+.
T Consensus 336 r~~Lr~G~~~p~~f~~peV~~vLR~~~~~--~~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 336 QRRMRAGLKIPEWYSFPEVLAELHRQTPP--RERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp HHHHTTTCCCCTTTSCHHHHHHHHHHSCC--GGGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCccccccchhhhhhhhccc--ccccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 34455554443334444433323222111 123456899999999999999999998875
No 305
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.09 E-value=0.038 Score=53.59 Aligned_cols=28 Identities=29% Similarity=0.552 Sum_probs=24.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
.+..+.|.||+|+||||+++.++..+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4567889999999999999999887753
No 306
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.05 E-value=0.063 Score=47.61 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=21.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~ 172 (517)
....++|.|++|+|||+++..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999998653
No 307
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.03 E-value=0.084 Score=51.06 Aligned_cols=27 Identities=30% Similarity=0.549 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
+..+.|.||.|+||||+++.++..+..
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 446889999999999999999988753
No 308
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.00 E-value=0.022 Score=52.75 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=16.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHH-HHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQ-HYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~-~~l 173 (517)
.+..+.|.||+|+||||+++.++ ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 35578899999999999999997 654
No 309
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.00 E-value=0.048 Score=60.10 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=22.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.+..+|.||||||||+++..++..+.
T Consensus 371 ~~~~lI~GppGTGKT~ti~~~i~~l~ 396 (800)
T 2wjy_A 371 RPLSLIQGPPGTGKTVTSATIVYHLA 396 (800)
T ss_dssp SSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 36789999999999999998887765
No 310
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.97 E-value=0.036 Score=52.89 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.+..++|+|++|+|||++++.++..+.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 456789999999999999999987654
No 311
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=93.93 E-value=0.28 Score=55.55 Aligned_cols=98 Identities=13% Similarity=0.224 Sum_probs=53.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhC------CCCCCCCCC---
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQ------PRKKLNGST--- 219 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~------~~~~~~~~~--- 219 (517)
+.++++.+|.|+|||.++...+..... .+ ..++++.-.. .-..+.+..+...++ +........
T Consensus 101 g~~vLV~apTGSGKTlva~lai~~~l~----~g---~rvL~l~Ptk-aLa~Q~~~~l~~~~~~vglltGd~~~~~~~~Iv 172 (1010)
T 2xgj_A 101 GESVLVSAHTSAGKTVVAEYAIAQSLK----NK---QRVIYTSPIK-ALSNQKYRELLAEFGDVGLMTGDITINPDAGCL 172 (1010)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHH----TT---CEEEEEESSH-HHHHHHHHHHHHHHSCEEEECSSCEECTTCSEE
T ss_pred CCCEEEECCCCCChHHHHHHHHHHHhc----cC---CeEEEECChH-HHHHHHHHHHHHHhCCEEEEeCCCccCCCCCEE
Confidence 368999999999999987554433221 12 3567766432 113345555555443 111111010
Q ss_pred -CHHHHHHHHHHhhhccCCCceEEEEEeCcchhcccC
Q 010136 220 -SPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITRD 255 (517)
Q Consensus 220 -~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~~ 255 (517)
.+.+.|...+... ........+|||||+|.+....
T Consensus 173 V~Tpe~L~~~L~~~-~~~l~~l~lVViDEaH~l~d~~ 208 (1010)
T 2xgj_A 173 VMTTEILRSMLYRG-SEVMREVAWVIFDEVHYMRDKE 208 (1010)
T ss_dssp EEEHHHHHHHHHHT-CTTGGGEEEEEEETGGGGGCTT
T ss_pred EEcHHHHHHHHHcC-cchhhcCCEEEEechhhhcccc
Confidence 1234455444321 1123456799999999997653
No 312
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.92 E-value=0.042 Score=51.01 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.+..+.|.|++|+||||+++.++..++
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 455799999999999999999987663
No 313
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=93.91 E-value=0.16 Score=50.44 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=18.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQ 170 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~ 170 (517)
.+.++++.+|+|+|||.++-..+
T Consensus 43 ~~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 43 PPRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp SCCCEEEECCTTSCHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHH
Confidence 45789999999999998765443
No 314
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.90 E-value=0.039 Score=53.10 Aligned_cols=40 Identities=18% Similarity=0.027 Sum_probs=29.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCC
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCT 193 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~ 193 (517)
.+..+.|.|+||+|||++++.++..+... .|. .+++++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~---~v~~~~~e 73 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGK---KVGLAMLE 73 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCC---CEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCC---eEEEEeCc
Confidence 45678899999999999999998776531 121 35666654
No 315
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.90 E-value=0.071 Score=51.73 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.+..+.|.|++|+||||+++.++..+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 445788999999999999999987664
No 316
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.89 E-value=0.037 Score=49.74 Aligned_cols=24 Identities=33% Similarity=0.282 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
..+.|+|++|+||||+++.+++.+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 358899999999999999998764
No 317
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=93.85 E-value=0.12 Score=53.36 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=16.8
Q ss_pred CCCeEEEEcCCCCcHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSM 166 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~ 166 (517)
.+.++++.||+|+|||...
T Consensus 130 ~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 130 PPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp SCCEEEEECCSSSSHHHHH
T ss_pred CCCcEEEEcCCCCchhHHH
Confidence 4679999999999999874
No 318
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=93.84 E-value=0.39 Score=50.49 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=17.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEK 168 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~ 168 (517)
...++++.+|+|+|||.+.-.
T Consensus 110 ~~~~~lv~apTGsGKTl~~~l 130 (563)
T 3i5x_A 110 EDHDVIARAKTGTGKTFAFLI 130 (563)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCCeEEEECCCCCCccHHHHH
Confidence 457899999999999986443
No 319
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.84 E-value=0.077 Score=48.49 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=23.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
+..+.|.|++|+||||+++.+++.+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 456889999999999999999888764
No 320
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.79 E-value=0.037 Score=55.31 Aligned_cols=28 Identities=32% Similarity=0.579 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
.+..++|+||+|+||||+++.++..+..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 4567999999999999999999987754
No 321
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=93.77 E-value=0.16 Score=49.11 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=18.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQ 170 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~ 170 (517)
+.++++.+|+|+|||.++-..+
T Consensus 31 ~~~~lv~~~TGsGKT~~~~~~~ 52 (337)
T 2z0m_A 31 GKNVVVRAKTGSGKTAAYAIPI 52 (337)
T ss_dssp TCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEcCCCCcHHHHHHHHH
Confidence 3689999999999998765554
No 322
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.76 E-value=0.023 Score=55.65 Aligned_cols=26 Identities=27% Similarity=0.255 Sum_probs=22.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
+..++|.||+|+|||+++..+++.++
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 45799999999999999999988753
No 323
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=93.66 E-value=0.33 Score=48.59 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=16.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKV 169 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v 169 (517)
+.++++.+|+|+|||.++-..
T Consensus 77 ~~~~lv~a~TGsGKT~~~~~~ 97 (414)
T 3eiq_A 77 GYDVIAQAQSGTGKTATFAIS 97 (414)
T ss_dssp TCCEEECCCSCSSSHHHHHHH
T ss_pred CCCEEEECCCCCcccHHHHHH
Confidence 356999999999999885443
No 324
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.64 E-value=0.11 Score=51.48 Aligned_cols=27 Identities=30% Similarity=0.549 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
+..+.|.||.|+||||+++.++..+..
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 346889999999999999999988753
No 325
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.63 E-value=0.044 Score=51.21 Aligned_cols=27 Identities=30% Similarity=0.292 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.+..+-|.||.|+||||+++.++..++
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345688999999999999999988764
No 326
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=93.60 E-value=0.055 Score=55.71 Aligned_cols=51 Identities=14% Similarity=0.141 Sum_probs=32.6
Q ss_pred CCCeEEEEcCCCCcHHHH-HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhC
Q 010136 148 KAGSLYVCGCPGTGKSLS-MEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQ 210 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l-~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~ 210 (517)
...++++.||+|+|||+. +-.++..+.. .+ ..++++... ..+..++...+.
T Consensus 20 ~~~~vlv~a~TGsGKT~~~~l~il~~~~~----~~---~~~lvl~Pt-----r~La~Q~~~~l~ 71 (459)
T 2z83_A 20 KRQMTVLDLHPGSGKTRKILPQIIKDAIQ----QR---LRTAVLAPT-----RVVAAEMAEALR 71 (459)
T ss_dssp TTCEEEECCCTTSCTTTTHHHHHHHHHHH----TT---CCEEEEECS-----HHHHHHHHHHTT
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHHh----CC---CcEEEECch-----HHHHHHHHHHhc
Confidence 357899999999999997 5566555432 12 346666532 335555666664
No 327
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.59 E-value=0.031 Score=50.31 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
+..++|.||+|+|||+++..+++..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4568999999999999999987653
No 328
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.58 E-value=0.054 Score=49.90 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=25.5
Q ss_pred ccCCCCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 145 EEEKAGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 145 ~~~~~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
.+..+..+.|.|++|+||||+++.+++.+..
T Consensus 17 ~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 17 QGPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp --CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3445667889999999999999999998875
No 329
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.53 E-value=0.044 Score=50.05 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~ 171 (517)
+..+.|.|++|+||||+++.++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999999865
No 330
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.51 E-value=0.033 Score=53.88 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
+..++|.||+|+|||+++..+++.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3468899999999999999998765
No 331
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=93.51 E-value=0.29 Score=49.72 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
++++.+|+|+|||.++-.++..+.
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~ 48 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRL 48 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 899999999999999888876653
No 332
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=93.46 E-value=0.18 Score=50.27 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=17.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQ 170 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~ 170 (517)
.++++.+|+|+|||.++-..+
T Consensus 59 ~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 59 RDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHH
Confidence 569999999999998765443
No 333
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=93.42 E-value=0.053 Score=59.07 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=18.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQ 170 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~ 170 (517)
..++++.||+|+|||+++-..+
T Consensus 40 ~~~~lv~apTGsGKT~~~~l~i 61 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEMAM 61 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHHHHH
Confidence 5789999999999999985443
No 334
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.42 E-value=0.06 Score=59.39 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=22.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
.+..+|.||||||||+++..++..+..
T Consensus 375 ~~~~lI~GppGTGKT~~i~~~i~~l~~ 401 (802)
T 2xzl_A 375 RPLSLIQGPPGTGKTVTSATIVYHLSK 401 (802)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHh
Confidence 457899999999999999888776653
No 335
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.40 E-value=0.055 Score=52.23 Aligned_cols=102 Identities=14% Similarity=0.136 Sum_probs=54.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCC-HHHHHHHHHHHhCCCCCCCCCCCHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTN-TSEIFSKILLKLQPRKKLNGSTSPLQYLQ 226 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s-~~~i~~~i~~~l~~~~~~~~~~~~~~~l~ 226 (517)
.+..+.|.|++|+||||++..++..+.. ..| ..+..+.+..... ..+.+......++..... ... ...+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~---~~G---~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~--~~~-~~~l~ 174 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML---EKH---KKIAFITTDTYRIAAVEQLKTYAELLQAPLEV--CYT-KEEFQ 174 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH---TTC---CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCB--CSS-HHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH---hcC---CEEEEEecCcccchHHHHHHHHHHhcCCCeEe--cCC-HHHHH
Confidence 4568999999999999999999987753 123 2466676655432 222222222222211111 112 23344
Q ss_pred HHHHhhhccCCCceEEEEEeCcchhcccCchHHHHHhc
Q 010136 227 NLYSQKLHSSVMKMMLIIADELDYLITRDRAVLHDLFM 264 (517)
Q Consensus 227 ~~~~~~~~~~~~~~~vI~iDEiD~L~~~~~~~L~~l~~ 264 (517)
..+.. ...+-+||||-.-.+. .....+..+..
T Consensus 175 ~al~~-----~~~~dlvIiDT~G~~~-~~~~~~~el~~ 206 (296)
T 2px0_A 175 QAKEL-----FSEYDHVFVDTAGRNF-KDPQYIDELKE 206 (296)
T ss_dssp HHHHH-----GGGSSEEEEECCCCCT-TSHHHHHHHHH
T ss_pred HHHHH-----hcCCCEEEEeCCCCCh-hhHHHHHHHHH
Confidence 44431 1345799999654442 23344444433
No 336
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.40 E-value=0.066 Score=56.64 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=25.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 147 EKAGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 147 ~~~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
..+..++|.|.+|+||||+++.+++.+..
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 34557899999999999999999998874
No 337
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.35 E-value=0.054 Score=54.31 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=22.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
..++|.||+|+|||+++..+++.+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4678999999999999999998764
No 338
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.31 E-value=0.041 Score=50.22 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
+..+.|.|++|+|||++++.+++.+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3468999999999999999988765
No 339
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.29 E-value=0.057 Score=56.29 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=26.3
Q ss_pred HHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 138 EFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 138 ~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
..+.-.+. .+.+++|.||+|+||||+++.++..+.
T Consensus 251 ~~l~~~v~--~g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 251 AYLWLAIE--HKFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp HHHHHHHH--TTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HHHHHHHh--CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34444443 355799999999999999999987653
No 340
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.23 E-value=0.042 Score=53.92 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=22.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
..++|.||+|+|||++++.+++.++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3688999999999999999988753
No 341
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.21 E-value=0.084 Score=53.35 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHH
Q 010136 134 KKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 134 ~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~ 172 (517)
..+.++|..... ..+.+.|.|++|+||||+++.++..
T Consensus 56 ~~i~~~L~~~~~--~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 56 SAISDALKEIDS--SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp HHHHHHHHHHHH--CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred hhhhhhhhhccc--CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 345555555443 4568889999999999999998764
No 342
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.18 E-value=0.06 Score=48.88 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=22.2
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHH
Q 010136 147 EKAGSLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 147 ~~~~~lli~G~pGtGKT~l~~~v~~~ 172 (517)
.....++|.|++|+|||+++..+...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34568999999999999999998654
No 343
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=93.12 E-value=0.38 Score=50.89 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=17.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEK 168 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~ 168 (517)
.+..+++.+|+|+|||.+.-.
T Consensus 59 ~~~dvlv~apTGsGKTl~~~l 79 (579)
T 3sqw_A 59 EDHDVIARAKTGTGKTFAFLI 79 (579)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHH
Confidence 456899999999999986443
No 344
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.12 E-value=0.048 Score=50.70 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..+.|.||.|+||||+++.++..+
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45678899999999999999986543
No 345
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=93.10 E-value=0.6 Score=47.39 Aligned_cols=19 Identities=26% Similarity=0.557 Sum_probs=16.2
Q ss_pred CCeEEEEcCCCCcHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSME 167 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~ 167 (517)
+.++++.+|+|+|||...-
T Consensus 93 g~d~i~~a~TGsGKT~a~~ 111 (434)
T 2db3_A 93 GRDLMACAQTGSGKTAAFL 111 (434)
T ss_dssp TCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCchHHHH
Confidence 4689999999999998643
No 346
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.07 E-value=0.049 Score=52.14 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQ 170 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~ 170 (517)
+..+.|.|++|+||||+++.++
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999987
No 347
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.99 E-value=0.11 Score=53.44 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
+..+.|.|+.|+||||+++.++..+..
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 447889999999999999999887753
No 348
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.98 E-value=0.072 Score=52.99 Aligned_cols=35 Identities=20% Similarity=0.391 Sum_probs=27.0
Q ss_pred HHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 138 EFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 138 ~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
..+.-.+. .+..+.|.||.|+||||+++.++..+.
T Consensus 166 ~~l~~~i~--~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 166 SFLRRAVQ--LERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HHHHHHHH--TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred HHHHHHHh--cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 44444443 466899999999999999999977653
No 349
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=92.98 E-value=0.1 Score=59.60 Aligned_cols=98 Identities=13% Similarity=0.220 Sum_probs=52.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCC------CCCCCCCC--
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQP------RKKLNGST-- 219 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~------~~~~~~~~-- 219 (517)
.+.+++++||.|+|||.++-..+..... .+ ..++++.-.. .-..+.+..+...++. ........
T Consensus 198 ~g~dvLV~ApTGSGKTlva~l~i~~~l~----~g---~rvlvl~Ptr-aLa~Q~~~~l~~~~~~VglltGd~~~~~~~~I 269 (1108)
T 3l9o_A 198 RGESVLVSAHTSAGKTVVAEYAIAQSLK----NK---QRVIYTSPIK-ALSNQKYRELLAEFGDVGLMTGDITINPDAGC 269 (1108)
T ss_dssp TTCCEEEECCSSSHHHHHHHHHHHHHHH----TT---CEEEEEESSH-HHHHHHHHHHHHHTSSEEEECSSCBCCCSCSE
T ss_pred cCCCEEEECCCCCChHHHHHHHHHHHHh----cC---CeEEEEcCcH-HHHHHHHHHHHHHhCCccEEeCccccCCCCCE
Confidence 3578999999999999987665544321 11 2466665432 1234455555554431 11111111
Q ss_pred --CHHHHHHHHHHhhhccCCCceEEEEEeCcchhccc
Q 010136 220 --SPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITR 254 (517)
Q Consensus 220 --~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~ 254 (517)
.+.+.|...+.... .......+|||||+|++...
T Consensus 270 lV~Tpe~L~~~L~~~~-~~l~~l~lVVIDEaH~l~d~ 305 (1108)
T 3l9o_A 270 LVMTTEILRSMLYRGS-EVMREVAWVIFDEVHYMRDK 305 (1108)
T ss_dssp EEEEHHHHHHHHHHCS-SHHHHEEEEEEETGGGTTSH
T ss_pred EEeChHHHHHHHHcCc-cccccCCEEEEhhhhhcccc
Confidence 12344444443110 00224579999999999654
No 350
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.95 E-value=0.061 Score=45.89 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~ 172 (517)
..++|.|++|+|||++++.+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999998754
No 351
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.95 E-value=0.074 Score=51.90 Aligned_cols=40 Identities=25% Similarity=0.482 Sum_probs=30.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCC
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSL 195 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~ 195 (517)
+..+.|+|++|+||||++..++..+... + -++..+.+...
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~----g---~kVllid~D~~ 144 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAEL----G---YKVLIAAADTF 144 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHT----T---CCEEEEECCCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC----C---CeEEEEeCCCc
Confidence 4468899999999999999999887642 2 24666666543
No 352
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.91 E-value=0.17 Score=46.15 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=23.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
+..|.|.|++|+||||.++.+.+.+..
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 457889999999999999999988864
No 353
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.91 E-value=0.042 Score=48.36 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=22.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
..+.|.|++|+||||+++.++..+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 46789999999999999999888764
No 354
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.88 E-value=0.058 Score=47.58 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
++..+|+|+.|+|||++++++.-.+
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999986554
No 355
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.88 E-value=0.055 Score=50.39 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..+.|.||.|+||||+++.++..+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678899999999999999987654
No 356
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.87 E-value=0.057 Score=48.39 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~ 172 (517)
.+.|.|++|+|||++++.++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999999998754
No 357
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=92.86 E-value=0.23 Score=56.18 Aligned_cols=97 Identities=12% Similarity=0.194 Sum_probs=51.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCC--------CCCCCC-
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRK--------KLNGST- 219 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~--------~~~~~~- 219 (517)
+.++++.||+|+|||.++...+..+.. .+ ..++++.-.. .-..+.+..+...+.+.. ......
T Consensus 54 g~~vlv~apTGsGKTlv~~~~i~~~~~----~g---~~vlvl~Ptr-aLa~Q~~~~l~~~~~~~~v~~l~G~~~~~~~~~ 125 (997)
T 4a4z_A 54 GDSVFVAAHTSAGKTVVAEYAIAMAHR----NM---TKTIYTSPIK-ALSNQKFRDFKETFDDVNIGLITGDVQINPDAN 125 (997)
T ss_dssp TCEEEEECCTTSCSHHHHHHHHHHHHH----TT---CEEEEEESCG-GGHHHHHHHHHTTC--CCEEEECSSCEECTTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHHh----cC---CeEEEEeCCH-HHHHHHHHHHHHHcCCCeEEEEeCCCccCCCCC
Confidence 368999999999999876655444322 11 2456555432 234555555554432110 000000
Q ss_pred ---CHHHHHHHHHHhhhccCCCceEEEEEeCcchhccc
Q 010136 220 ---SPLQYLQNLYSQKLHSSVMKMMLIIADELDYLITR 254 (517)
Q Consensus 220 ---~~~~~l~~~~~~~~~~~~~~~~vI~iDEiD~L~~~ 254 (517)
.+.+.|...+.... .......+|||||+|.+...
T Consensus 126 IlV~Tpe~L~~~l~~~~-~~l~~l~lvViDEaH~l~d~ 162 (997)
T 4a4z_A 126 CLIMTTEILRSMLYRGA-DLIRDVEFVIFDEVHYVNDQ 162 (997)
T ss_dssp EEEEEHHHHHHHHHHTC-SGGGGEEEEEECCTTCCCTT
T ss_pred EEEECHHHHHHHHHhCc-hhhcCCCEEEEECccccccc
Confidence 12334444443111 11245679999999988654
No 358
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.85 E-value=0.05 Score=50.17 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..+.|.||.|+||||+++.++..+
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45578899999999999999986543
No 359
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.83 E-value=0.14 Score=50.73 Aligned_cols=28 Identities=32% Similarity=0.523 Sum_probs=24.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 147 EKAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 147 ~~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
+....+.|+|+||+||||++..++..+.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456799999999999999999988764
No 360
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.83 E-value=0.067 Score=55.93 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
+..++++|.||+||||+++.+++.++
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45789999999999999999998875
No 361
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.82 E-value=0.081 Score=49.17 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=24.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
+..+.|.|++|+||||+++.+++.+..
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 567889999999999999999988864
No 362
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.81 E-value=0.055 Score=48.22 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~ 172 (517)
.+.|.|++|+|||++++.++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999999998654
No 363
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=92.80 E-value=0.41 Score=47.90 Aligned_cols=25 Identities=20% Similarity=0.436 Sum_probs=18.2
Q ss_pred CCeEEEEcCCCCcHHHHHH-HHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSME-KVQHYL 173 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~-~v~~~l 173 (517)
+.++++.+|+|+|||.+.- .++..+
T Consensus 52 ~~~~lv~a~TGsGKT~~~~~~~l~~~ 77 (417)
T 2i4i_A 52 KRDLMACAQTGSGKTAAFLLPILSQI 77 (417)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4689999999999998543 334433
No 364
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.79 E-value=0.044 Score=52.76 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=27.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCC
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLT 196 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~ 196 (517)
...+.|.|++|+||||+++.+++.++.. + ..+..+++-.+.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~----~---~~~~vI~~D~~~ 45 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRRE----G---VKAVSIEGDAFH 45 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHH----T---CCEEEEEGGGGB
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhc----C---CCeeEeecchhh
Confidence 4568899999999999999999877642 2 235556655543
No 365
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.79 E-value=0.05 Score=50.62 Aligned_cols=26 Identities=19% Similarity=0.147 Sum_probs=22.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
+..+.|.|++|+||||+++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34688999999999999999988763
No 366
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=92.77 E-value=0.35 Score=53.01 Aligned_cols=29 Identities=21% Similarity=0.188 Sum_probs=21.9
Q ss_pred hccCCCCeEEEEcCCCCcHHHHHHHHHHH
Q 010136 144 LEEEKAGSLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 144 l~~~~~~~lli~G~pGtGKT~l~~~v~~~ 172 (517)
+..+.+.++++.|+.|+|||.++-..+-.
T Consensus 384 l~~~~~~~~Ll~a~TGSGKTlvall~il~ 412 (780)
T 1gm5_A 384 MISEKPMNRLLQGDVGSGKTVVAQLAILD 412 (780)
T ss_dssp HHSSSCCCCEEECCSSSSHHHHHHHHHHH
T ss_pred ccccCCCcEEEEcCCCCCHHHHHHHHHHH
Confidence 33445678999999999999987655443
No 367
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.74 E-value=0.062 Score=51.09 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
++.|.||+|+||||+++.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999987764
No 368
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=92.69 E-value=0.2 Score=52.29 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
+.++++.+|+|+|||.++-..+...
T Consensus 19 ~~~~l~~~~tGsGKT~~~~~~~~~~ 43 (555)
T 3tbk_A 19 GKNTIICAPTGCGKTFVSLLICEHH 43 (555)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHH
Confidence 3679999999999999876665443
No 369
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.69 E-value=0.068 Score=45.90 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~ 171 (517)
-.++|.|++|+|||++++.+..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4689999999999999999865
No 370
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.68 E-value=0.061 Score=50.92 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..+.|.||.|+||||+++.++..+
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678899999999999999986543
No 371
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.65 E-value=0.071 Score=45.61 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~ 171 (517)
-.++|.|++|+|||++++.+..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999998864
No 372
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=92.63 E-value=0.09 Score=53.96 Aligned_cols=50 Identities=12% Similarity=0.076 Sum_probs=30.4
Q ss_pred CCeEEEEcCCCCcHHHH-HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhC
Q 010136 149 AGSLYVCGCPGTGKSLS-MEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQ 210 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l-~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~ 210 (517)
...+++.||+|+|||+. +-.++..+.. .+ ..++++.-. ..+..++...+.
T Consensus 19 ~~~~lv~a~TGsGKT~~~~~~~l~~~~~----~~---~~~lvl~Pt-----r~La~Q~~~~l~ 69 (451)
T 2jlq_A 19 KRLTIMDLHPGAGKTKRILPSIVREALL----RR---LRTLILAPT-----RVVAAEMEEALR 69 (451)
T ss_dssp TCEEEECCCTTSSCCTTHHHHHHHHHHH----TT---CCEEEEESS-----HHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHhhHHHHHHHHHHHh----cC---CcEEEECCC-----HHHHHHHHHHhc
Confidence 45679999999999994 5555444332 12 246666532 335556666664
No 373
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.62 E-value=0.057 Score=49.18 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~ 172 (517)
.+..+.|.||.|+||||+++.++..
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3567889999999999999999876
No 374
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.49 E-value=0.12 Score=54.47 Aligned_cols=28 Identities=25% Similarity=0.339 Sum_probs=24.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
.+..++|+|++|+||||+++.+++.+..
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 4567899999999999999999988764
No 375
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.47 E-value=0.092 Score=48.08 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=23.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.+..+.|.|++|+||||.++.+++.+.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 356789999999999999999988875
No 376
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.46 E-value=0.076 Score=46.13 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~ 171 (517)
-.++|.|++|+|||++++.+..
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999999864
No 377
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.45 E-value=0.17 Score=50.02 Aligned_cols=26 Identities=35% Similarity=0.391 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
...+.|.|+||+||||+++.++..+.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 55788999999999999999987664
No 378
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.45 E-value=0.08 Score=50.23 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~ 172 (517)
.+..+.|.||.|+||||+++.++..
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999998774
No 379
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.44 E-value=0.064 Score=49.08 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..+.|.||.|+||||+++.++..+
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678899999999999999987654
No 380
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.43 E-value=0.071 Score=45.48 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~ 172 (517)
.+++.|++|+|||++++.+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998643
No 381
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.43 E-value=0.076 Score=45.60 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~ 171 (517)
.++|.|++|+|||++++.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999864
No 382
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.43 E-value=0.069 Score=46.21 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~ 171 (517)
..+.|.|++|+|||++++.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3588999999999999999864
No 383
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.41 E-value=0.091 Score=45.66 Aligned_cols=24 Identities=17% Similarity=0.409 Sum_probs=21.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~ 171 (517)
....++|.|++|+|||++++.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999864
No 384
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=92.40 E-value=0.66 Score=45.88 Aligned_cols=22 Identities=14% Similarity=0.120 Sum_probs=17.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQ 170 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~ 170 (517)
+.++++.+|+|+|||.++-..+
T Consensus 45 ~~~~lv~a~TGsGKT~~~~~~~ 66 (391)
T 1xti_A 45 GMDVLCQAKSGMGKTAVFVLAT 66 (391)
T ss_dssp TCCEEEECSSCSSHHHHHHHHH
T ss_pred CCcEEEECCCCCcHHHHHHHHH
Confidence 3679999999999998765443
No 385
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.40 E-value=0.07 Score=46.78 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=21.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~ 171 (517)
.+..++|.|++|+|||+++..+++
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999999865
No 386
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.40 E-value=0.074 Score=46.07 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~ 172 (517)
-.++|.|++|+|||++++.+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46899999999999999998643
No 387
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.39 E-value=0.081 Score=49.34 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
..+.|.||.|+||||+++.++..+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 678899999999999999987654
No 388
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.38 E-value=0.07 Score=50.51 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..+.|.||.|+||||+++.++..+
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 45678899999999999999987543
No 389
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.38 E-value=0.079 Score=45.36 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~ 171 (517)
-.++|.|++|+|||++++.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999864
No 390
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.35 E-value=0.074 Score=52.63 Aligned_cols=26 Identities=19% Similarity=0.422 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..+.|.||.|+||||+++.++..+
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 45678899999999999999987654
No 391
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.35 E-value=0.06 Score=47.57 Aligned_cols=21 Identities=24% Similarity=0.561 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~ 171 (517)
.+.|.|++|+|||++++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999999876
No 392
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.34 E-value=0.081 Score=45.50 Aligned_cols=23 Identities=26% Similarity=0.211 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~ 172 (517)
-.++|.|++|+|||++++.+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36899999999999999998643
No 393
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=92.33 E-value=0.36 Score=47.90 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=15.5
Q ss_pred CeEEEEcCCCCcHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSME 167 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~ 167 (517)
.++++.+|+|+|||.++-
T Consensus 59 ~~~lv~~~TGsGKT~~~~ 76 (394)
T 1fuu_A 59 HDVLAQAQSGTGKTGTFS 76 (394)
T ss_dssp CCEEECCCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 579999999999998743
No 394
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=92.32 E-value=0.5 Score=54.29 Aligned_cols=41 Identities=20% Similarity=0.248 Sum_probs=28.3
Q ss_pred cHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHH
Q 010136 129 REDEQKKVLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQ 170 (517)
Q Consensus 129 Re~e~~~l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~ 170 (517)
+..|.+.+...+.. +..+.+..++++|+.|+|||.++-..+
T Consensus 605 t~~Q~~ai~~il~~-~~~g~p~d~ll~~~TGsGKT~val~aa 645 (1151)
T 2eyq_A 605 TPDQAQAINAVLSD-MCQPLAMDRLVCGDVGFGKTEVAMRAA 645 (1151)
T ss_dssp CHHHHHHHHHHHHH-HHSSSCCEEEEECCCCTTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-HhcCCcCcEEEECCCCCCHHHHHHHHH
Confidence 56666555555554 333455689999999999998865443
No 395
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.29 E-value=0.081 Score=49.64 Aligned_cols=25 Identities=24% Similarity=0.137 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~ 172 (517)
.+..+.|.||.|+||||+++.++..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999999764
No 396
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.26 E-value=0.077 Score=48.97 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
.+-|.|+||+||||.++.+++.++
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ceeeECCCCCCHHHHHHHHHHHhC
Confidence 467999999999999999987763
No 397
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.23 E-value=0.085 Score=45.40 Aligned_cols=22 Identities=14% Similarity=0.024 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~ 171 (517)
-.++|.|++|+|||++++.+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 3689999999999999999864
No 398
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.23 E-value=0.09 Score=45.01 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~ 171 (517)
.++|.|++|+|||++++.+..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999999864
No 399
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.23 E-value=0.073 Score=49.25 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..+.|.||.|+||||+++.++..+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678899999999999999987654
No 400
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=92.23 E-value=0.11 Score=55.51 Aligned_cols=51 Identities=14% Similarity=0.125 Sum_probs=32.7
Q ss_pred CCCeEEEEcCCCCcHHHH-HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhC
Q 010136 148 KAGSLYVCGCPGTGKSLS-MEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQ 210 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l-~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~ 210 (517)
.+..+++.+|+|+|||+. +-.++..+.. .+ ..++++.-. ..+..++.+.+.
T Consensus 185 ~g~dvlv~a~TGSGKT~~~~lpil~~l~~----~~---~~vLvl~Pt-----reLa~Qi~~~l~ 236 (618)
T 2whx_A 185 KKRLTIMDLHPGAGKTKRILPSIVREALK----RR---LRTLILAPT-----RVVAAEMEEALR 236 (618)
T ss_dssp TTCEEEECCCTTSSTTTTHHHHHHHHHHH----TT---CCEEEEESS-----HHHHHHHHHHTT
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHHHHh----CC---CeEEEEcCh-----HHHHHHHHHHhc
Confidence 467899999999999997 4556555533 11 346666532 335555666663
No 401
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.21 E-value=0.074 Score=52.19 Aligned_cols=37 Identities=19% Similarity=0.488 Sum_probs=27.9
Q ss_pred HHHHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 136 VLEFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 136 l~~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
+...+.-.+. .+..+.|.||+|+||||+++.++..+.
T Consensus 160 ~l~~l~~~i~--~g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 160 AISAIKDGIA--IGKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HHHHHHHHHH--HTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred HHhhhhhhcc--CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4444544443 356899999999999999999987653
No 402
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.21 E-value=0.085 Score=45.95 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~ 172 (517)
...++|.|++|+|||++++.+...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999998653
No 403
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.20 E-value=0.071 Score=50.27 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..+.|.||.|+||||+++.++..+
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678899999999999999986543
No 404
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.19 E-value=0.075 Score=50.21 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=22.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..+.|.||.|+||||+++.++..+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 46688899999999999999997654
No 405
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.18 E-value=0.086 Score=45.17 Aligned_cols=21 Identities=33% Similarity=0.384 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~ 171 (517)
.++|.|++|+|||++++.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999864
No 406
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.16 E-value=0.08 Score=47.70 Aligned_cols=23 Identities=22% Similarity=0.301 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~ 171 (517)
...++|.|++|+|||+++..+..
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45799999999999999999864
No 407
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.15 E-value=0.078 Score=49.97 Aligned_cols=26 Identities=15% Similarity=0.335 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..+.|.||.|+||||+++.++..+
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678899999999999999987543
No 408
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.13 E-value=0.07 Score=49.86 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..+.|.||.|+||||+++.++..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45578899999999999999987654
No 409
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.13 E-value=0.081 Score=45.50 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~ 171 (517)
-.++|.|++|+|||++++.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 3689999999999999999864
No 410
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.11 E-value=0.077 Score=50.46 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..+.|.||.|+||||+++.++..+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 46678899999999999999987554
No 411
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.10 E-value=0.089 Score=52.14 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..+.|.||.|+||||+++.++..+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 45678899999999999999987654
No 412
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.10 E-value=0.09 Score=52.15 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..+.|.||.|+||||+++.++..+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 45678899999999999999987654
No 413
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.08 E-value=0.084 Score=46.92 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=20.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~ 171 (517)
....++|.|++|+|||++++.+..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999999864
No 414
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.08 E-value=0.076 Score=49.77 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..+.|.||.|+||||+++.++..+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678899999999999999986543
No 415
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.06 E-value=0.073 Score=46.61 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=20.9
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHH
Q 010136 147 EKAGSLYVCGCPGTGKSLSMEKVQ 170 (517)
Q Consensus 147 ~~~~~lli~G~pGtGKT~l~~~v~ 170 (517)
.....++|.|++|+|||++++.+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 456689999999999999998875
No 416
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.06 E-value=0.076 Score=49.49 Aligned_cols=26 Identities=15% Similarity=0.409 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..+.|.||.|+||||+++.++..+
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678899999999999999987543
No 417
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.04 E-value=0.11 Score=51.06 Aligned_cols=28 Identities=29% Similarity=0.506 Sum_probs=24.0
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 147 EKAGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 147 ~~~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
..+..+.|.|+||+||||+++.++..+.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 4566788999999999999999987764
No 418
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.03 E-value=0.093 Score=52.36 Aligned_cols=26 Identities=19% Similarity=0.232 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..+.|.||.|+||||+++.++..+
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 45678899999999999999997654
No 419
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=92.03 E-value=0.094 Score=54.13 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=23.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
+..++|.|.||+||||+++.+++.+.
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45799999999999999999998876
No 420
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.00 E-value=0.089 Score=45.28 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~ 171 (517)
-.++|.|++|+|||++++.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999999864
No 421
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.00 E-value=0.079 Score=50.48 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..+.|.||.|+||||+++.++..+
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45678899999999999999987543
No 422
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=91.98 E-value=0.16 Score=52.89 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=17.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEK 168 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~ 168 (517)
...++++.+|.|+|||.++-.
T Consensus 157 ~~~~~ll~apTGsGKT~~~~~ 177 (508)
T 3fho_A 157 PPRNMIGQSQSGTGKTAAFAL 177 (508)
T ss_dssp SCCCEEEECCSSTTSHHHHHH
T ss_pred CCCCEEEECCCCccHHHHHHH
Confidence 357899999999999987543
No 423
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.96 E-value=0.078 Score=46.30 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~ 171 (517)
+..+.|.|++|+|||++++.+..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 44689999999999999999864
No 424
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.95 E-value=0.095 Score=44.99 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~ 171 (517)
-.++|.|++|+|||++++.+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999999864
No 425
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.94 E-value=0.082 Score=47.61 Aligned_cols=34 Identities=15% Similarity=0.044 Sum_probs=20.4
Q ss_pred HHHHHhhccCCCCeEEEEcCCCCcHHHHHHHHHH
Q 010136 138 EFCKKNLEEEKAGSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 138 ~~L~~~l~~~~~~~lli~G~pGtGKT~l~~~v~~ 171 (517)
+.+.........-.++|.|.+|+|||++++.+..
T Consensus 19 ~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 19 SHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp -----------CEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHh
Confidence 3333333334456899999999999999988764
No 426
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.93 E-value=0.082 Score=49.59 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..+.|.||.|+||||+++.++..+
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45678899999999999999987543
No 427
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.89 E-value=0.091 Score=45.22 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=18.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~ 171 (517)
.++|.|++|+|||++++.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 588999999999999999863
No 428
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.89 E-value=0.098 Score=52.10 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..+.|.||.|+||||+++.++..+
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 45678899999999999999987643
No 429
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.88 E-value=0.093 Score=51.88 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..+.|.||.|+||||+++.++..+
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45678899999999999999987554
No 430
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=91.84 E-value=0.76 Score=49.63 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
+.++++.+|.|+|||..+-..+...
T Consensus 28 g~~~iv~~~TGsGKTl~~~~~i~~~ 52 (696)
T 2ykg_A 28 GKNTIICAPTGCGKTFVSLLICEHH 52 (696)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCchHHHHHHHHHHHH
Confidence 4689999999999999877766543
No 431
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=91.84 E-value=0.1 Score=55.57 Aligned_cols=28 Identities=25% Similarity=0.521 Sum_probs=24.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYLVD 175 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l~~ 175 (517)
.+..|+|.|.||+||||+++.+++.|..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~ 78 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVC 78 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 4557999999999999999999988753
No 432
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.83 E-value=0.087 Score=49.94 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..+.|.||.|+||||+++.++..+
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45678899999999999999987543
No 433
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.82 E-value=0.097 Score=46.09 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~ 171 (517)
-.++|.|++|+|||++++.+..
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999864
No 434
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.80 E-value=0.14 Score=45.02 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=21.8
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHH
Q 010136 147 EKAGSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 147 ~~~~~lli~G~pGtGKT~l~~~v~~ 171 (517)
.....++|.|++|+|||++++.+..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999999863
No 435
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=91.77 E-value=0.35 Score=45.79 Aligned_cols=58 Identities=12% Similarity=0.117 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhhccCCCCeEEEEcC-CCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCC
Q 010136 131 DEQKKVLEFCKKNLEEEKAGSLYVCGC-PGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSL 195 (517)
Q Consensus 131 ~e~~~l~~~L~~~l~~~~~~~lli~G~-pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~ 195 (517)
+.+..|...|.....+.....+.|+|+ +|+|||+++-.++..+... | .+++.|++-..
T Consensus 64 Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~----G---~rVLLID~D~~ 122 (271)
T 3bfv_A 64 EKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQA----G---YKTLIVDGDMR 122 (271)
T ss_dssp HHHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHT----T---CCEEEEECCSS
T ss_pred HHHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhC----C---CeEEEEeCCCC
Confidence 445556665555444445667888875 8999999999999888752 2 36888888643
No 436
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.77 E-value=0.087 Score=49.95 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..+.|.||.|+||||+++.++..+
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45678899999999999999987543
No 437
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.76 E-value=0.082 Score=52.16 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..+.|.||.|+||||+++.++..+
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 45678899999999999999987543
No 438
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=91.73 E-value=0.27 Score=38.81 Aligned_cols=70 Identities=7% Similarity=-0.026 Sum_probs=51.2
Q ss_pred HHhccCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCC-CCCChHHHHHHHHHHhhcCceeeccCCceeEEE
Q 010136 416 DTIKSLPQHQQILLCSAVKFFRGGKKDMTVGELNKSYMNICKTSLI-PPVGTLEFFSMCRVLHDQGVLKVGRDDKLKRVT 494 (517)
Q Consensus 416 ~~i~~L~~~~k~iL~al~~l~~~~~~~~~~~~l~~~y~~~~~~~~~-~~~~~~~~~~~~~~L~~~glI~~~~~~~~~~~~ 494 (517)
+...+|+..|..||..|.. . ..++..+|.+ .+.. ++++...+..+++.|++.|+|...+.|+...|.
T Consensus 28 ~~~~~LT~~e~~VL~~L~~--~---~~~t~~eL~~-------~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~~gR~~~Y~ 95 (99)
T 2k4b_A 28 EVEFNVSNAELIVMRVIWS--L---GEARVDEIYA-------QIPQELEWSLATVKTLLGRLVKKEMLSTEKEGRKFVYR 95 (99)
T ss_dssp ---CCCCCSCSHHHHHHHH--H---SCEEHHHHHH-------TCCGGGCCCHHHHHHHHHHHHHTTSCEEEEETTEEEEE
T ss_pred hcCCCCCHHHHHHHHHHHh--C---CCCCHHHHHH-------HHhcccCCCHhhHHHHHHHHHHCCCEEEEeCCCEEEEE
Confidence 3455799999999987764 1 3578888744 4433 357889999999999999999987778777665
Q ss_pred eec
Q 010136 495 LKA 497 (517)
Q Consensus 495 l~~ 497 (517)
..+
T Consensus 96 p~i 98 (99)
T 2k4b_A 96 PLM 98 (99)
T ss_dssp CCC
T ss_pred Eee
Confidence 443
No 439
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.69 E-value=0.089 Score=50.26 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..+.|.||.|+||||+++.++..+
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45678899999999999999987544
No 440
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.69 E-value=0.11 Score=44.77 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~ 171 (517)
...++|.|++|+|||++++.+..
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999854
No 441
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.68 E-value=0.1 Score=45.21 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~ 172 (517)
-.++|.|.+|+|||++++.+...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999998643
No 442
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.67 E-value=0.034 Score=52.53 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..|+|.|++|+||||+++.+++.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45678999999999999999988765
No 443
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=91.67 E-value=0.15 Score=53.29 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=19.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~ 172 (517)
.++++.+|+|+|||.++-..+..
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~ 45 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEH 45 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHHH
Confidence 57999999999999987666544
No 444
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=91.67 E-value=0.081 Score=47.83 Aligned_cols=25 Identities=16% Similarity=0.073 Sum_probs=22.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHYLV 174 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~l~ 174 (517)
..|.|.|++|+|||++++.+++.|+
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999998874
No 445
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.64 E-value=0.099 Score=46.00 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~ 171 (517)
..+.|.|++|+|||++++.++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999864
No 446
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.63 E-value=0.088 Score=45.15 Aligned_cols=21 Identities=29% Similarity=0.437 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~ 171 (517)
.++|.|++|+|||++++.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 589999999999999998854
No 447
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=91.62 E-value=0.3 Score=48.53 Aligned_cols=93 Identities=12% Similarity=0.076 Sum_probs=52.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHHHhCCCC-CCCCCCCHHHH-
Q 010136 147 EKAGSLYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKILLKLQPRK-KLNGSTSPLQY- 224 (517)
Q Consensus 147 ~~~~~lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i~~~l~~~~-~~~~~~~~~~~- 224 (517)
+++..++|.|++|+|||+++..+++.+.... +.+.++++-+..- ..+ ...+...+.+.. .......+...
T Consensus 173 grGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~-----~dv~~V~~lIGER--~~E-V~d~~~~~~G~VV~atadep~~~r~ 244 (427)
T 3l0o_A 173 GKGQRGMIVAPPKAGKTTILKEIANGIAENH-----PDTIRIILLIDER--PEE-VTDIRESTNAIVIAAPFDMPPDKQV 244 (427)
T ss_dssp BTTCEEEEEECTTCCHHHHHHHHHHHHHHHC-----TTSEEEEEECSCC--HHH-HSSSSSSCCSEEEECCTTSCHHHHH
T ss_pred cCCceEEEecCCCCChhHHHHHHHHHHhhcC-----CCeEEEEEEeccC--cch-HHHHHHHhCCeEEEECCCCCHHHHH
Confidence 4678999999999999999999988876421 2245566655432 111 111122221100 00111222222
Q ss_pred --------HHHHHHhhhccCCCceEEEEEeCcchhc
Q 010136 225 --------LQNLYSQKLHSSVMKMMLIIADELDYLI 252 (517)
Q Consensus 225 --------l~~~~~~~~~~~~~~~~vI~iDEiD~L~ 252 (517)
+.++|. ..++.++|++|.+-.++
T Consensus 245 ~~a~~altiAEyfr-----d~G~dVLil~DslTR~A 275 (427)
T 3l0o_A 245 KVAELTLEMAKRLV-----EFNYDVVILLDSLTRLA 275 (427)
T ss_dssp HHHHHHHHHHHHHH-----HTTCEEEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHH-----HcCCCEEEecccchHHH
Confidence 233443 35678999999988775
No 448
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.62 E-value=0.1 Score=45.41 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~ 172 (517)
..++|.|.+|+|||++++.+...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999998654
No 449
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.60 E-value=0.11 Score=46.11 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~ 171 (517)
-.++|.|++|+|||++++.+..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 4699999999999999998865
No 450
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.59 E-value=0.092 Score=49.38 Aligned_cols=26 Identities=31% Similarity=0.300 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..+.|.||.|+||||+++.++..+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678899999999999999987654
No 451
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=91.58 E-value=0.3 Score=47.07 Aligned_cols=57 Identities=14% Similarity=0.247 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhhccCCCCeEEEEcC-CCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCC
Q 010136 131 DEQKKVLEFCKKNLEEEKAGSLYVCGC-PGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTS 194 (517)
Q Consensus 131 ~e~~~l~~~L~~~l~~~~~~~lli~G~-pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~ 194 (517)
+.+..|...|...........+.|+|+ +|+|||+++-.++..+... | .+++.|++-.
T Consensus 86 Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~----G---~rVLLID~D~ 143 (299)
T 3cio_A 86 EAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQS----D---QKVLFIDADL 143 (299)
T ss_dssp HHHHHHHHHHHHHTSSCSCCEEEEEESSSSSCHHHHHHHHHHHHHHT----T---CCEEEEECCT
T ss_pred HHHHHHHHHHHHhccCCCCeEEEEECCCCCCChHHHHHHHHHHHHhC----C---CcEEEEECCC
Confidence 344455555554444455677888875 8999999999999888752 2 3588888765
No 452
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.56 E-value=0.1 Score=45.30 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~ 171 (517)
-.++|.|++|+|||++++.++.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999999863
No 453
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.55 E-value=0.11 Score=45.57 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~ 171 (517)
-.++|.|++|+|||++++.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999864
No 454
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.52 E-value=0.11 Score=51.88 Aligned_cols=26 Identities=15% Similarity=0.281 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..+.|.||.|+||||+++.++..+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 45678899999999999999987654
No 455
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.51 E-value=0.11 Score=45.17 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~ 171 (517)
-.++|.|++|+|||++++.+..
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 3689999999999999999864
No 456
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.48 E-value=0.11 Score=45.17 Aligned_cols=23 Identities=17% Similarity=0.076 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~ 172 (517)
-.++|.|++|+|||++++.+...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999998754
No 457
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.48 E-value=0.11 Score=45.80 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~ 172 (517)
-.++|.|.+|+|||++++.++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999998743
No 458
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.47 E-value=0.11 Score=46.07 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~ 172 (517)
....++|.|++|+|||++++.+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999998754
No 459
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.42 E-value=0.11 Score=45.81 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~ 171 (517)
-.++|.|++|+|||++++.+..
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999865
No 460
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.38 E-value=0.11 Score=45.83 Aligned_cols=21 Identities=19% Similarity=0.252 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~ 171 (517)
.++|.|++|+|||++++.++.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999988764
No 461
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.38 E-value=0.12 Score=45.92 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~ 172 (517)
.-.++|.|++|+|||++++.++..
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999998653
No 462
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.33 E-value=0.12 Score=45.25 Aligned_cols=22 Identities=32% Similarity=0.250 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~ 171 (517)
-.++|.|++|+|||++++.+..
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999874
No 463
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=91.32 E-value=0.12 Score=45.21 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~ 171 (517)
..++|.|++|+|||++++.+..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhh
Confidence 4699999999999999999864
No 464
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.30 E-value=0.12 Score=44.96 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~ 171 (517)
-.++|.|++|+|||++++.+..
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4689999999999999999854
No 465
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.30 E-value=0.12 Score=45.92 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~ 171 (517)
..-.++|.|++|+|||++++.+..
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 455799999999999999999865
No 466
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.28 E-value=0.11 Score=45.52 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~ 171 (517)
-.++|.|++|+|||++++.+..
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999999864
No 467
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.26 E-value=0.11 Score=45.14 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~ 171 (517)
..++|.|++|+|||++++.+..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999864
No 468
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.19 E-value=0.14 Score=44.53 Aligned_cols=24 Identities=13% Similarity=0.034 Sum_probs=20.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~ 171 (517)
..-.++|.|++|+|||++++.+..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999998864
No 469
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.16 E-value=0.13 Score=45.53 Aligned_cols=22 Identities=32% Similarity=0.294 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~ 171 (517)
-.++|.|.+|+|||++++.+..
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHh
Confidence 4699999999999999998864
No 470
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.14 E-value=0.34 Score=43.47 Aligned_cols=47 Identities=30% Similarity=0.371 Sum_probs=31.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHH
Q 010136 152 LYVCGCPGTGKSLSMEKVQHYLVDWAKEAGLQQPEVFSINCTSLTNTSEIFSKI 205 (517)
Q Consensus 152 lli~G~pGtGKT~l~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~s~~~i~~~i 205 (517)
|.|-|.-|+||||.++.+++.|... | ..++...-+..+........+
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~----g---~~v~~treP~~t~~~~~ir~~ 49 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKR----G---KKVILKREPGGTETGEKIRKI 49 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT----T---CCEEEEESSCSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC----C---CcEEEEECCCCCcHHHHHHHH
Confidence 5688999999999999999888652 3 346666555543334443333
No 471
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.13 E-value=0.13 Score=45.47 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~ 171 (517)
-.++|.|++|+|||++++.+..
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999999864
No 472
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.10 E-value=0.13 Score=44.98 Aligned_cols=22 Identities=18% Similarity=0.081 Sum_probs=19.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~ 171 (517)
-.++|.|++|+|||++++.+..
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999998764
No 473
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.09 E-value=0.13 Score=45.47 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~ 171 (517)
-.++|.|++|+|||++++.+..
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999999864
No 474
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=91.09 E-value=0.11 Score=46.46 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=20.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~ 171 (517)
....++|.|++|+|||++++.+..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 455799999999999999999864
No 475
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=91.07 E-value=0.82 Score=47.00 Aligned_cols=101 Identities=11% Similarity=0.053 Sum_probs=55.0
Q ss_pred CCCCeEEEEcCCCCcHHHH-HHHHHHHHHHHHHhcCCCCceEEEEeCCCCC-CHHHHHHHHHHHhCCCC----CCCCCCC
Q 010136 147 EKAGSLYVCGCPGTGKSLS-MEKVQHYLVDWAKEAGLQQPEVFSINCTSLT-NTSEIFSKILLKLQPRK----KLNGSTS 220 (517)
Q Consensus 147 ~~~~~lli~G~pGtGKT~l-~~~v~~~l~~~~~~~~~~~~~~v~vn~~~~~-s~~~i~~~i~~~l~~~~----~~~~~~~ 220 (517)
+++..++|.|++|||||++ +..+++....+....+...+..||+-+..-. ...+++..+...=.-.. .......
T Consensus 160 grGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p 239 (510)
T 2ck3_A 160 GRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDA 239 (510)
T ss_dssp BTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSC
T ss_pred ccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCC
Confidence 4678899999999999999 6677777653310001122456777666532 22344444433100000 0011222
Q ss_pred HHHH---------HHHHHHhhhccCCCceEEEEEeCcchhc
Q 010136 221 PLQY---------LQNLYSQKLHSSVMKMMLIIADELDYLI 252 (517)
Q Consensus 221 ~~~~---------l~~~~~~~~~~~~~~~~vI~iDEiD~L~ 252 (517)
+... +-++|. ..++.++|++|.+-+++
T Consensus 240 ~~~r~~a~~~a~tiAEyfr-----d~G~dVLli~Dsltr~A 275 (510)
T 2ck3_A 240 APLQYLAPYSGCSMGEYFR-----DNGKHALIIYDDLSKQA 275 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----TTTCEEEEEEETHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----HcCCcEEEEEcCHHHHH
Confidence 2222 334454 35778999999887665
No 476
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=91.05 E-value=1.2 Score=37.27 Aligned_cols=75 Identities=11% Similarity=0.150 Sum_probs=54.4
Q ss_pred hccCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhcCceeeccCCceeEEEeec
Q 010136 418 IKSLPQHQQILLCSAVKFFRGGKKDMTVGELNKSYMNICKTSLIPPVGTLEFFSMCRVLHDQGVLKVGRDDKLKRVTLKA 497 (517)
Q Consensus 418 i~~L~~~~k~iL~al~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~L~~~glI~~~~~~~~~~~~l~~ 497 (517)
+.+|+..|..||..+... ...++..+|.+... .. .+++.+.+..+++.|++.|+|...+.++.+.|.+.+
T Consensus 4 ~~~lt~~e~~vL~~L~~~----~~~~t~~el~~~l~---~~---~~~~~~Tvt~~l~rLe~kGlv~r~~~~r~~~~~~~l 73 (138)
T 2g9w_A 4 LTRLGDLERAVMDHLWSR----TEPQTVRQVHEALS---AR---RDLAYTTVMAVLQRLAKKNLVLQIRDDRAHRYAPVH 73 (138)
T ss_dssp GGGCCHHHHHHHHHHHTC----SSCEEHHHHHHHHT---TT---CCCCHHHHHHHHHHHHHTTSEEEEC---CCEEEESS
T ss_pred cccCCHHHHHHHHHHHhc----CCCCCHHHHHHHHh---cc---CCCCHHHHHHHHHHHHHCCCEEEEecCCeEEEEeCC
Confidence 468999999999877631 24689988865321 11 357889999999999999999987777877888777
Q ss_pred CHHHH
Q 010136 498 DESDI 502 (517)
Q Consensus 498 ~~~~i 502 (517)
+.++.
T Consensus 74 t~~~~ 78 (138)
T 2g9w_A 74 GRDEL 78 (138)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 77654
No 477
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.03 E-value=0.085 Score=52.20 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..+.|.||.|+||||+++.++..+
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45678899999999999999987643
No 478
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.02 E-value=0.13 Score=45.55 Aligned_cols=23 Identities=17% Similarity=0.159 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~ 172 (517)
-.++|.|++|+|||++++.+...
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 36999999999999999998653
No 479
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=90.98 E-value=0.11 Score=45.72 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~ 171 (517)
.++|.|++|+|||++++.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 588999999999999999864
No 480
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.98 E-value=0.11 Score=49.08 Aligned_cols=25 Identities=20% Similarity=0.398 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
+..+.|.||.|+||||+++.++..+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678899999999999999997654
No 481
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=90.97 E-value=0.13 Score=45.87 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~ 171 (517)
..++|.|++|+|||++++.+..
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999999864
No 482
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=90.95 E-value=0.17 Score=49.99 Aligned_cols=27 Identities=15% Similarity=0.112 Sum_probs=23.9
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 147 EKAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 147 ~~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
..+..+.|.|++|+||||+++.++..+
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467789999999999999999998774
No 483
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=90.94 E-value=0.13 Score=45.27 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~ 172 (517)
...++|.|++|+|||++++.+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999998643
No 484
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=90.94 E-value=0.14 Score=45.22 Aligned_cols=22 Identities=18% Similarity=0.116 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~ 171 (517)
-.++|.|.+|+|||++++.+..
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999864
No 485
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.91 E-value=0.13 Score=51.58 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..+.|.||.|+||||+++.++..+
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 46688899999999999999997643
No 486
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.90 E-value=0.12 Score=45.30 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHH
Q 010136 147 EKAGSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 147 ~~~~~lli~G~pGtGKT~l~~~v~~ 171 (517)
.....++|.|++|+|||++++.+..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 3456899999999999999999864
No 487
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.90 E-value=0.16 Score=43.45 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
++..+|+||.|+|||+++.++.-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999986544
No 488
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=90.90 E-value=0.13 Score=45.63 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~ 171 (517)
-.++|.|++|+|||++++.+..
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 4799999999999999999864
No 489
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=90.87 E-value=0.14 Score=45.33 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~ 171 (517)
-.++|.|++|+|||++++.+..
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 3699999999999999999864
No 490
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=90.83 E-value=0.14 Score=45.78 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~ 172 (517)
.-.++|.|++|+|||++++.+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 347899999999999999998643
No 491
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=90.83 E-value=0.14 Score=45.55 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~ 171 (517)
-.++|.|.||+|||++++.+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999874
No 492
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.81 E-value=0.12 Score=49.70 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
.+..+.|.||.|+||||+++.++..+
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45678899999999999999987554
No 493
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.79 E-value=0.14 Score=45.17 Aligned_cols=23 Identities=13% Similarity=0.067 Sum_probs=19.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~ 172 (517)
-.++|.|++|+|||++++.+...
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999766543
No 494
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=90.79 E-value=0.14 Score=45.25 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 010136 151 SLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 151 ~lli~G~pGtGKT~l~~~v~~ 171 (517)
.++|.|++|+|||++++.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 689999999999999999864
No 495
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=90.77 E-value=0.1 Score=45.42 Aligned_cols=22 Identities=27% Similarity=0.200 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~ 171 (517)
-.++|.|.+|+|||++++.+..
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999865
No 496
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=90.75 E-value=0.14 Score=45.12 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~~ 172 (517)
-.++|.|++|+|||++++.+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999998643
No 497
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=90.74 E-value=0.14 Score=44.78 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=19.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQ 170 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~ 170 (517)
...++|.|++|+|||++++.+.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHH
Confidence 3478999999999999999986
No 498
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.74 E-value=0.14 Score=45.61 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHH
Q 010136 148 KAGSLYVCGCPGTGKSLSMEKVQHY 172 (517)
Q Consensus 148 ~~~~lli~G~pGtGKT~l~~~v~~~ 172 (517)
....++|.|++|+|||++++.+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3457999999999999999998643
No 499
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=90.72 E-value=0.15 Score=45.29 Aligned_cols=22 Identities=18% Similarity=0.173 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 010136 150 GSLYVCGCPGTGKSLSMEKVQH 171 (517)
Q Consensus 150 ~~lli~G~pGtGKT~l~~~v~~ 171 (517)
-.++|.|.+|+|||++++.+..
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~ 45 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSK 45 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 4799999999999999999865
No 500
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.71 E-value=0.12 Score=51.43 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH
Q 010136 149 AGSLYVCGCPGTGKSLSMEKVQHYL 173 (517)
Q Consensus 149 ~~~lli~G~pGtGKT~l~~~v~~~l 173 (517)
...+.|.|++|+||||+++.++..+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999998764
Done!