BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010138
(517 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OW3|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1RGP|A Chain A, Gtpase-Activation Domain From Rhogap
Length = 242
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 82/186 (44%), Gaps = 13/186 (6%)
Query: 174 FGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNK 233
FGVS + +Q + +P +L +L + L EGIFR +A V+ + N
Sbjct: 45 FGVSLQHLQEK-NPEQEPIPIVLRETVAYLQAHA-LTTEGIFRRSANTQVVREVQQKYNM 102
Query: 234 GVVPHGID----VHCLAGLIKAWLRELPTGVLD-SLTPDQVMHCNTEED-----CTQLVK 283
G+ P D +H A ++K +LRELP +L L P V N +E Q+++
Sbjct: 103 GL-PVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQ 161
Query: 284 LLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAPNMTQMADPLTALIHAVQVMN 343
LP +L + + + H NKM N+A+VF PN+ D L +
Sbjct: 162 TLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDAAITLKAINPINT 221
Query: 344 FLKTLI 349
F K L+
Sbjct: 222 FTKFLL 227
>pdb|1GRN|B Chain B, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX
Length = 203
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 82/186 (44%), Gaps = 13/186 (6%)
Query: 174 FGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNK 233
FGVS + +Q + +P +L +L + L EGIFR +A V+ + N
Sbjct: 6 FGVSLQHLQ-EKNPEQEPIPIVLRETVAYLQAHA-LTTEGIFRRSANTQVVREVQQKYNM 63
Query: 234 GVVPHGID----VHCLAGLIKAWLRELPTGVLD-SLTPDQVMHCNTEED-----CTQLVK 283
G+ P D +H A ++K +LRELP +L L P V N +E Q+++
Sbjct: 64 GL-PVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQ 122
Query: 284 LLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAPNMTQMADPLTALIHAVQVMN 343
LP +L + + + H NKM N+A+VF PN+ D L +
Sbjct: 123 TLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDAAITLKAINPINT 182
Query: 344 FLKTLI 349
F K L+
Sbjct: 183 FTKFLL 188
>pdb|1AM4|A Chain A, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|B Chain B, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|C Chain C, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 199
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 82/186 (44%), Gaps = 13/186 (6%)
Query: 174 FGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNK 233
FGVS + +Q + +P +L +L + L EGIFR +A V+ + N
Sbjct: 10 FGVSLQHLQEK-NPEQEPIPIVLRETVAYLQAHA-LTTEGIFRRSANTQVVREVQQKYNM 67
Query: 234 GVVPHGID----VHCLAGLIKAWLRELPTGVLD-SLTPDQVMHCNTEED-----CTQLVK 283
G+ P D +H A ++K +LRELP +L L P V N +E Q+++
Sbjct: 68 GL-PVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQ 126
Query: 284 LLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAPNMTQMADPLTALIHAVQVMN 343
LP +L + + + H NKM N+A+VF PN+ D L +
Sbjct: 127 TLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDAAITLKAINPINT 186
Query: 344 FLKTLI 349
F K L+
Sbjct: 187 FTKFLL 192
>pdb|1TX4|A Chain A, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 198
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 82/186 (44%), Gaps = 13/186 (6%)
Query: 174 FGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNK 233
FGVS + +Q + +P +L +L + L EGIFR +A V+ + N
Sbjct: 9 FGVSLQHLQEK-NPEQEPIPIVLRETVAYLQAHA-LTTEGIFRRSANTQVVREVQQKYNM 66
Query: 234 GVVPHGID----VHCLAGLIKAWLRELPTGVLD-SLTPDQVMHCNTEED-----CTQLVK 283
G+ P D +H A ++K +LRELP +L L P V N +E Q+++
Sbjct: 67 GL-PVDFDQYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQ 125
Query: 284 LLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAPNMTQMADPLTALIHAVQVMN 343
LP +L + + + H NKM N+A+VF PN+ D L +
Sbjct: 126 TLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDAAITLKAINPINT 185
Query: 344 FLKTLI 349
F K L+
Sbjct: 186 FTKFLL 191
>pdb|2NGR|B Chain B, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap
Length = 234
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 81/186 (43%), Gaps = 13/186 (6%)
Query: 174 FGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNK 233
FGVS + +Q + +P +L +L + L EGIF +A V+ + N
Sbjct: 37 FGVSLQHLQEK-NPEQEPIPIVLRETVAYLQAHA-LTTEGIFARSANTQVVREVQQKYNM 94
Query: 234 GVVPHGID----VHCLAGLIKAWLRELPTGVLD-SLTPDQVMHCNTEED-----CTQLVK 283
G+ P D +H A ++K +LRELP +L L P V N +E Q+++
Sbjct: 95 GL-PVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQ 153
Query: 284 LLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAPNMTQMADPLTALIHAVQVMN 343
LP +L + + + H NKM N+A+VF PN+ D L +
Sbjct: 154 TLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDAAITLKAINPINT 213
Query: 344 FLKTLI 349
F K L+
Sbjct: 214 FTKFLL 219
>pdb|3MSX|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 201
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 83/163 (50%), Gaps = 17/163 (10%)
Query: 173 VFGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLN 232
+FG+S ++ C D+ +P +L M L +G L +GIFR +A ++++LN
Sbjct: 12 LFGISLPNI-CENDN----LPKPVLDMLFFLNQKGPL-TKGIFRQSANVKSCRELKEKLN 65
Query: 233 KGVVPHGID---VHCLAGLIKAWLRELPTGVLDSLTPDQ---VMHCNTEED----CTQLV 282
GV H +D + +A ++K +LR +P + S D VM +E+ +L+
Sbjct: 66 SGVEVH-LDCESIFVIASVLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQRLL 124
Query: 283 KLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAPNM 325
LP + LL + ++ ++ QH N+M A N+A+ AP++
Sbjct: 125 DQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCVAPSI 167
>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin
Length = 466
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 78/158 (49%), Gaps = 21/158 (13%)
Query: 208 GLKAEGIFRINA-----ENSQEEYVRD----QLNKGVVPHGIDVHCLAGLIKAWLRELPT 258
GLK+EG++R++ E+ + + RD ++ V P D++ + G +K + R+LP
Sbjct: 303 GLKSEGLYRVSGFTEHIEDVKMAFDRDGEKADISANVYP---DINIITGALKLYFRDLPI 359
Query: 259 GVLDSLTPDQVMHC----NTEED---CTQLVKLLPPSEAALLDWAINLMADVVQHEQYNK 311
V+ T + + N +E +++ LLPP+ L + + + V +E+ N
Sbjct: 360 PVITYDTYSKFIDAAKISNADERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNF 419
Query: 312 MNARNIAMVFAPNMTQMADPLTALIHAVQVMNFLKTLI 349
MNA N+ +VF P T M P + + + M + K ++
Sbjct: 420 MNAENLGIVFGP--TLMRPPEDSTLTTLHDMRYQKLIV 455
>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1)
Length = 463
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 73/153 (47%), Gaps = 24/153 (15%)
Query: 193 PTILLMMQRHLYSEGGLKAEGIFRINA-----ENSQEEYVRDQLNKGV-VPHGIDVHCLA 246
P ++ M R + S G L +EG++R++ E+ + + RD + V D++ +
Sbjct: 286 PMVVDMCIREIESRG-LNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIIT 344
Query: 247 GLIKAWLRELPTGVLDS------------LTPDQVMHCNTEEDCTQLVKLLPPSEAALLD 294
G +K + R+LP ++ + PD+ + E + +KLLPP+ L
Sbjct: 345 GALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQL-----ETLHEALKLLPPAHCETLR 399
Query: 295 WAINLMADVVQHEQYNKMNARNIAMVFAPNMTQ 327
+ + + V HE+ N MNA N+ +VF P + +
Sbjct: 400 YLMAHLKRVTLHEKENLMNAENLGIVFGPTLMR 432
>pdb|3EAP|A Chain A, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|B Chain B, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|C Chain C, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|D Chain D, Crystal Structure Of The Rhogap Domain Of Arhgap11a
Length = 271
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 82/169 (48%), Gaps = 17/169 (10%)
Query: 173 VFGVSAKSMQCSYDDRGNSVPTILL----MMQRHLYSEGGLKAEG-IFRINAENSQEEYV 227
+FGV ++ S +P+ L+ ++ H+++EG + G + R+ A ++ ++
Sbjct: 64 IFGVPFNALPHSAVPEYGHIPSFLVDACTSLEDHIHTEGLFRKSGSVIRLKALKNKVDHG 123
Query: 228 RDQLNKGVVPHGIDVHCLAGLIKAWLRELPTGVL-----DSLTPDQVMHCNTEEDCTQLV 282
L+ P I AGL+K + RELP +L ++L Q + + T L+
Sbjct: 124 EGCLSSAP-PCDI-----AGLLKQFFRELPEPILPADLHEALLKAQQLGTEEKNKATLLL 177
Query: 283 K-LLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAPNMTQMAD 330
LL +L + N + +V NKM++ N+A++FAPN+ Q ++
Sbjct: 178 SCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSE 226
>pdb|2OSA|A Chain A, The Rho-Gap Domain Of Human N-Chimaerin
Length = 202
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 73/153 (47%), Gaps = 24/153 (15%)
Query: 193 PTILLMMQRHLYSEGGLKAEGIFRINA-----ENSQEEYVRDQLNKGV-VPHGIDVHCLA 246
P ++ M R + S G L +EG++R++ E+ + + RD + V D++ +
Sbjct: 25 PMVVDMCIREIESRG-LNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIIT 83
Query: 247 GLIKAWLRELPTGVLDS------------LTPDQVMHCNTEEDCTQLVKLLPPSEAALLD 294
G +K + R+LP ++ + PD+ + E + +KLLPP+ L
Sbjct: 84 GALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQL-----ETLHEALKLLPPAHCETLR 138
Query: 295 WAINLMADVVQHEQYNKMNARNIAMVFAPNMTQ 327
+ + + V HE+ N MNA N+ +VF P + +
Sbjct: 139 YLMAHLKRVTLHEKENLMNAENLGIVFGPTLMR 171
>pdb|3IUG|A Chain A, Crystal Structure Of The Rhogap Domain Of Rics
pdb|3IUG|B Chain B, Crystal Structure Of The Rhogap Domain Of Rics
Length = 229
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 13/130 (10%)
Query: 211 AEGIFRINAENSQEEYVRDQLNKGVVP------HGIDVHCLAGLIKAWLRELP----TGV 260
+GI+R++ S + +R + + VP + D+H + L K + RELP T
Sbjct: 54 VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQ 113
Query: 261 LDSLTPDQVMHCNTEEDCTQL---VKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNI 317
L D V EE ++ ++ LPP L++ + ++ + + M+A+N+
Sbjct: 114 LYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNL 173
Query: 318 AMVFAPNMTQ 327
A+V+APN+ +
Sbjct: 174 AIVWAPNLLR 183
>pdb|2EE5|A Chain A, Solution Structure Of The N-Teruminus Extended Rhogap
Domain From Human Rho Gtpase Activating Protein 5
Variant
Length = 219
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 11/133 (8%)
Query: 206 EGGLKAEGIFRINAENSQEEYVRDQL----NKGVVPHGIDVHCLAGLIKAWLRELPTGVL 261
+ GL EG++R++ + ++ ++ Q N +V + V+ +AG +KA+ +LP ++
Sbjct: 50 DTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGALKAFFADLPDPLI 109
Query: 262 D-SLTPDQVMHCNTEEDCTQL------VKLLPPSEAALLDWAINLMADVVQHEQYNKMNA 314
SL P+ + + +L VK P + + I + V Q + N M A
Sbjct: 110 PYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTA 169
Query: 315 RNIAMVFAPNMTQ 327
N+++ F P + +
Sbjct: 170 DNLSICFWPTLMR 182
>pdb|2EE4|A Chain A, Solution Structure Of The Rhogap Domain From Human Rho
Gtpase Activating Protein 5 Variant
Length = 209
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 11/133 (8%)
Query: 206 EGGLKAEGIFRINAENSQEEYVRDQL----NKGVVPHGIDVHCLAGLIKAWLRELPTGVL 261
+ GL EG++R++ + ++ ++ Q N +V + V+ +AG +KA+ +LP ++
Sbjct: 40 DTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGALKAFFADLPDPLI 99
Query: 262 D-SLTPDQVMHCNTEEDCTQL------VKLLPPSEAALLDWAINLMADVVQHEQYNKMNA 314
SL P+ + + +L VK P + + I + V Q + N M A
Sbjct: 100 PYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTA 159
Query: 315 RNIAMVFAPNMTQ 327
N+++ F P + +
Sbjct: 160 DNLSICFWPTLMR 172
>pdb|3FK2|A Chain A, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|B Chain B, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|C Chain C, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|D Chain D, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
Length = 246
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 39/154 (25%)
Query: 208 GLKAEGIFRINAENSQEEYVRDQLNKGVVPHGID-------VHCLAGLIKAWLRELPTGV 260
GL EGI+R++ S+ E ++ Q ++ H +D V+ +AG +K++ ELP
Sbjct: 83 GLSTEGIYRVSGNKSEMESLQRQFDQD---HNLDLAEKDFTVNTVAGAMKSFFSELP--- 136
Query: 261 LDSLTP----------------DQVMHCNTEEDCTQLVKLLPPSEAALLDWAINLMADVV 304
D L P +Q +H +++K P + + I+ + V
Sbjct: 137 -DPLVPYNMQIDLVEAHKINDREQKLHA-----LKEVLKKFPKENHEVFKYVISHLNKVS 190
Query: 305 QHEQYNKMNARNIAMVFAPNMTQ----MADPLTA 334
+ + N M + N+++ F P + + D LTA
Sbjct: 191 HNNKVNLMTSENLSICFWPTLMRPDFSTMDALTA 224
>pdb|3KUQ|A Chain A, Crystal Structure Of The Dlc1 Rhogap Domain
Length = 228
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 16/165 (9%)
Query: 172 SVFGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQL 231
SVFGV + + G +P + R+L + L G+FR + S+ + +R Q+
Sbjct: 19 SVFGVP---LTVNVQRTGQPLPQSIQQAMRYLRNHC-LDQVGLFRKSGVKSRIQALR-QM 73
Query: 232 NKGVVP----HGIDVHCLAGLIKAWLRELPTGVLD---SLTPDQVMHCNTEEDCTQLVK- 283
N+G + G + +A ++K + R+LP ++ S T Q+ ++ Q +K
Sbjct: 74 NEGAIDCVNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQAIKA 133
Query: 284 ---LLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAPNM 325
LLP +L + ++DV + N+M N+A+ AP++
Sbjct: 134 AIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCLAPSL 178
>pdb|3BYI|A Chain A, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|B Chain B, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|C Chain C, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|D Chain D, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
Length = 214
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 56/130 (43%), Gaps = 12/130 (9%)
Query: 208 GLKAEGIFRINAENSQEEYVRDQLNKGVV-----PHGIDVHCLAGLIKAWLRELPTGVLD 262
GL +GI+R++ + + +R +N+ D+H + G +K + RELP +
Sbjct: 50 GLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFP 109
Query: 263 SLTPDQVMHCNTEED-------CTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNAR 315
+Q + ++D LV+ LPP + + +V N M+ +
Sbjct: 110 YSFFEQFVEAIKKQDNNTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQ 169
Query: 316 NIAMVFAPNM 325
++ +VF P +
Sbjct: 170 SLGIVFGPTL 179
>pdb|1PBW|A Chain A, Structure Of Bcr-Homology (Bh) Domain
pdb|1PBW|B Chain B, Structure Of Bcr-Homology (Bh) Domain
Length = 216
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 14/133 (10%)
Query: 206 EGGLKAEGIFRINAENSQEEYVRDQLN---KGVVPHGIDVHCLAGLIKAWLRELPTGVLD 262
+ GL+ ++R + ++ E +R L+ V IDVH LA K +L +LP V+
Sbjct: 38 KKGLECSTLYRTQSSSNLAE-LRQLLDCDTPSVDLEMIDVHVLADAFKRYLLDLPNPVIP 96
Query: 263 SLTPDQVMHCNTE----EDCTQLVKLL------PPSEAALLDWAINLMADVVQHEQYNKM 312
+ +++ E E+ QL+K L P L + + + Q N +
Sbjct: 97 AAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLL 156
Query: 313 NARNIAMVFAPNM 325
NAR ++ +F+P +
Sbjct: 157 NARVLSEIFSPML 169
>pdb|2OVJ|A Chain A, The Crystal Structure Of The Human Rac Gtpase Activating
Protein 1 (Racgap1) Mgcracgap
Length = 201
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 62/145 (42%), Gaps = 16/145 (11%)
Query: 206 EGGLKAEGIFRINA-ENSQEEYVRDQLNKGVVP---HGIDVHCLAGLIKAWLRELPTGVL 261
+ GL G++RI+ + + +E L VP D+H + L+K +LR L +L
Sbjct: 30 QRGLTETGLYRISGCDRTVKELKEKFLRVKTVPLLSKVDDIHAICSLLKDFLRNLKEPLL 89
Query: 262 DSLTPDQVMHCN--TEED-----CTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNA 314
M T+ED Q V LP + L + + + V Q + KM+
Sbjct: 90 TFRLNRAFMEAAEITDEDNSIAAMYQAVGELPQANRDTLAFLMIHLQRVAQ-SPHTKMDV 148
Query: 315 RNIAMVFAPNMTQMA----DPLTAL 335
N+A VF P + A DP+T L
Sbjct: 149 ANLAKVFGPTIVAHAVPNPDPVTML 173
>pdb|2QV2|A Chain A, A Role Of The Lowe Syndrome Protein Ocrl In Early Steps Of
The Endocytic Pathway
Length = 342
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/139 (20%), Positives = 61/139 (43%), Gaps = 5/139 (3%)
Query: 187 DRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVVPHGI--DVHC 244
+R VP + ++ HL+ + E +F+ + + + D L+ + P I H
Sbjct: 170 ERPLQVPKEIWLLVDHLF-KYACHQEDLFQTPGMQEELQQIIDCLDTSI-PETIPGSNHS 227
Query: 245 LAGLIKAWLRELPTGVLDSLTPDQVMHCNTE-EDCTQLVKLLPPSEAALLDWAINLMADV 303
+A + +L LP V+ + + + C Q++ LP + + + + ++
Sbjct: 228 VAEALLIFLEALPEPVICYELYQRCLDSAYDPRICRQVISQLPRCHRNVFRYLMAFLREL 287
Query: 304 VQHEQYNKMNARNIAMVFA 322
++ +YN +NA IA +F
Sbjct: 288 LKFSEYNSVNANMIATLFT 306
>pdb|3QIS|A Chain A, Recognition Of The F&h Motif By The Lowe Syndrome Protein
Ocrl
Length = 366
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 28/139 (20%), Positives = 61/139 (43%), Gaps = 5/139 (3%)
Query: 187 DRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVVPHGI--DVHC 244
+R VP + ++ HL+ + E +F+ + + + D L+ + P I H
Sbjct: 194 ERPLQVPKEIWLLVDHLF-KYACHQEDLFQTPGMQEELQQIIDCLDTSI-PETIPGSNHS 251
Query: 245 LAGLIKAWLRELPTGVLDSLTPDQVMHCNTE-EDCTQLVKLLPPSEAALLDWAINLMADV 303
+A + +L LP V+ + + + C Q++ LP + + + + ++
Sbjct: 252 VAEALLIFLEALPEPVICYELYQRCLDSAYDPRICRQVISQLPRCHRNVFRYLMAFLREL 311
Query: 304 VQHEQYNKMNARNIAMVFA 322
++ +YN +NA IA +F
Sbjct: 312 LKFSEYNSVNANMIATLFT 330
>pdb|1KHT|A Chain A, Adenylate Kinase From Methanococcus Voltae
pdb|1KHT|B Chain B, Adenylate Kinase From Methanococcus Voltae
pdb|1KHT|C Chain C, Adenylate Kinase From Methanococcus Voltae
Length = 192
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 237 PHGIDVHCLAGLIKAWLRELPTGVLDSLTPDQVMHCNTEEDCTQLVKLLPPSEAALLDWA 296
P +D H K +L LP+ VL+ L PD ++ T D + ++ + LD A
Sbjct: 86 PVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTGDEILMRRMSDETRVRDLDTA 145
Query: 297 INLMADVVQHEQYNK 311
+ + QH+ N+
Sbjct: 146 ----STIEQHQFMNR 156
>pdb|3UW2|A Chain A, X-Ray Crystal Structure Of
PhosphoglucomutasePHOSPHOMANNOMUTASE Family Protein
(Bth_i1489)from Burkholderia Thailandensis
Length = 485
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 61/146 (41%), Gaps = 13/146 (8%)
Query: 378 DSHLSNIKTDPEAEVPLELTDQDSCTPEGPEISKFSRAV--TLGRLESDAEEKFWNFHEK 435
D ++ I D + PL+L GP ++ +A+ L L +D + F N H
Sbjct: 179 DQYVERIVGDIKLTRPLKLVVDAGNGVAGPLATRLFKALGCELVELFTDIDGNFPNHHPD 238
Query: 436 SVGEEDIESVSDSSKPALCERETGASENG----FGVGYNNGDWLSLRRGV-----RRLCR 486
E+++ V +K + E G + +G GV +G + R + L R
Sbjct: 239 PAHPENLQDVI--AKLKATDAEIGFAFDGDGDRLGVVTKDGQIIYPDRQLMLFAEEVLSR 296
Query: 487 HPLFQLGKPAKKTRNLGIVNTEEGGE 512
+P Q+ K TRNL E+GGE
Sbjct: 297 NPGAQIIYDVKCTRNLARWVREKGGE 322
>pdb|3H86|B Chain B, Crystal Structure Of Adenylate Kinase From Methanococcus
Maripaludis
pdb|3H86|A Chain A, Crystal Structure Of Adenylate Kinase From Methanococcus
Maripaludis
pdb|3H86|C Chain C, Crystal Structure Of Adenylate Kinase From Methanococcus
Maripaludis
pdb|3H86|G Chain G, Crystal Structure Of Adenylate Kinase From Methanococcus
Maripaludis
Length = 192
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 237 PHGIDVHCLAGLIKAWLRELPTGVLDSLTPDQVMHCNTEEDCTQLVKL 284
P +D H K +L LP VL L PD V+ T+ D + +L
Sbjct: 86 PVAVDTHSTVKTPKGYLPGLPAWVLTELNPDIVIVVETDGDEILMRRL 133
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 9/57 (15%)
Query: 395 ELTDQDSCTPEGPEISKFSRAVTLGRLESDA---------EEKFWNFHEKSVGEEDI 442
+LTD + + PEI K+ + V + +SD ++KFW + S+ + DI
Sbjct: 202 QLTDMNPTYEKTPEIFKYLQKVIPEQRQSDKSKLVVFDADKDKFWEYEGNSINKNDI 258
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,684,590
Number of Sequences: 62578
Number of extensions: 530248
Number of successful extensions: 1063
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1031
Number of HSP's gapped (non-prelim): 24
length of query: 517
length of database: 14,973,337
effective HSP length: 103
effective length of query: 414
effective length of database: 8,527,803
effective search space: 3530510442
effective search space used: 3530510442
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)