Query 010138
Match_columns 517
No_of_seqs 358 out of 1641
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 21:29:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010138.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010138hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4270 GTPase-activator prote 100.0 3.2E-43 7E-48 380.4 16.6 250 115-364 85-347 (577)
2 cd04383 RhoGAP_srGAP RhoGAP_sr 100.0 1E-39 2.2E-44 312.7 12.5 176 172-351 1-188 (188)
3 cd04390 RhoGAP_ARHGAP22_24_25 100.0 7.3E-39 1.6E-43 308.5 16.1 184 172-356 1-199 (199)
4 cd04372 RhoGAP_chimaerin RhoGA 100.0 1.9E-38 4.1E-43 304.9 16.5 179 174-356 1-194 (194)
5 cd04407 RhoGAP_myosin_IXB RhoG 100.0 4.3E-38 9.3E-43 301.1 15.8 172 174-350 1-185 (186)
6 cd04408 RhoGAP_GMIP RhoGAP_GMI 100.0 3.6E-38 7.7E-43 304.7 14.7 174 174-351 1-200 (200)
7 cd04389 RhoGAP_KIAA1688 RhoGAP 100.0 4.9E-38 1.1E-42 300.9 15.2 178 174-351 1-187 (187)
8 cd04403 RhoGAP_ARHGAP27_15_12_ 100.0 7.7E-38 1.7E-42 299.1 14.5 173 174-350 1-186 (187)
9 cd04384 RhoGAP_CdGAP RhoGAP_Cd 100.0 3.9E-38 8.6E-43 303.4 12.6 174 172-350 1-194 (195)
10 cd04404 RhoGAP-p50rhoGAP RhoGA 100.0 1.1E-37 2.4E-42 299.2 15.7 185 170-356 2-195 (195)
11 cd04375 RhoGAP_DLC1 RhoGAP_DLC 100.0 1.7E-37 3.6E-42 304.3 17.1 182 171-356 2-214 (220)
12 cd04391 RhoGAP_ARHGAP18 RhoGAP 100.0 1.3E-37 2.8E-42 303.9 16.2 184 173-357 1-206 (216)
13 cd04386 RhoGAP_nadrin RhoGAP_n 100.0 1.1E-37 2.4E-42 301.4 15.0 185 171-359 2-202 (203)
14 cd04394 RhoGAP-ARHGAP11A RhoGA 100.0 1.9E-37 4.1E-42 300.1 16.4 182 173-356 1-195 (202)
15 cd04396 RhoGAP_fSAC7_BAG7 RhoG 100.0 1.3E-37 2.7E-42 306.0 14.7 179 173-352 1-221 (225)
16 cd04402 RhoGAP_ARHGAP20 RhoGAP 100.0 1.7E-37 3.7E-42 297.8 15.2 181 173-359 1-191 (192)
17 cd04378 RhoGAP_GMIP_PARG1 RhoG 100.0 1.5E-37 3.2E-42 300.8 14.1 174 174-351 1-203 (203)
18 cd04406 RhoGAP_myosin_IXA RhoG 100.0 2E-37 4.3E-42 296.5 14.3 172 174-350 1-185 (186)
19 cd04393 RhoGAP_FAM13A1a RhoGAP 100.0 3.1E-37 6.6E-42 295.2 15.0 178 172-351 1-189 (189)
20 cd04381 RhoGap_RalBP1 RhoGap_R 100.0 3.4E-37 7.3E-42 293.6 14.0 171 174-358 1-181 (182)
21 cd04409 RhoGAP_PARG1 RhoGAP_PA 100.0 4.3E-37 9.4E-42 299.5 14.9 173 174-350 1-210 (211)
22 cd04379 RhoGAP_SYD1 RhoGAP_SYD 100.0 1.1E-36 2.4E-41 296.2 15.6 176 174-351 1-205 (207)
23 cd04387 RhoGAP_Bcr RhoGAP_Bcr: 100.0 1.1E-36 2.4E-41 293.8 14.9 153 174-330 1-165 (196)
24 cd04397 RhoGAP_fLRG1 RhoGAP_fL 100.0 1.8E-36 4E-41 295.3 15.9 183 174-357 1-208 (213)
25 cd04373 RhoGAP_p190 RhoGAP_p19 100.0 2E-36 4.4E-41 289.1 15.3 171 174-353 1-183 (185)
26 cd04377 RhoGAP_myosin_IX RhoGA 100.0 3E-36 6.6E-41 287.8 16.2 172 174-350 1-185 (186)
27 cd04395 RhoGAP_ARHGAP21 RhoGAP 100.0 2.5E-36 5.5E-41 290.4 15.7 179 173-354 1-194 (196)
28 cd04398 RhoGAP_fRGD1 RhoGAP_fR 100.0 2.7E-36 5.8E-41 288.6 15.4 177 174-356 1-192 (192)
29 cd04388 RhoGAP_p85 RhoGAP_p85: 100.0 4.3E-36 9.2E-41 290.5 15.4 183 180-371 4-199 (200)
30 cd04376 RhoGAP_ARHGAP6 RhoGAP_ 100.0 1.4E-35 3E-40 288.2 17.4 169 188-357 5-201 (206)
31 cd04400 RhoGAP_fBEM3 RhoGAP_fB 100.0 8.5E-36 1.9E-40 285.5 13.3 172 173-357 1-188 (190)
32 cd04382 RhoGAP_MgcRacGAP RhoGA 100.0 5E-35 1.1E-39 281.6 16.5 164 186-351 11-188 (193)
33 cd04385 RhoGAP_ARAP RhoGAP_ARA 100.0 7.4E-35 1.6E-39 278.0 15.3 171 175-352 2-184 (184)
34 cd04392 RhoGAP_ARHGAP19 RhoGAP 100.0 1.5E-34 3.3E-39 281.2 17.6 172 174-357 1-197 (208)
35 KOG2200 Tumour suppressor prot 100.0 9.7E-35 2.1E-39 309.0 13.6 194 125-327 257-462 (674)
36 cd04399 RhoGAP_fRGD2 RhoGAP_fR 100.0 2.8E-34 6.1E-39 280.1 13.5 181 174-358 1-210 (212)
37 cd04374 RhoGAP_Graf RhoGAP_Gra 100.0 6.7E-34 1.4E-38 275.9 15.1 159 192-351 28-203 (203)
38 cd04380 RhoGAP_OCRL1 RhoGAP_OC 100.0 3.5E-33 7.6E-38 273.5 15.1 143 189-332 47-197 (220)
39 smart00324 RhoGAP GTPase-activ 100.0 2.2E-31 4.8E-36 249.0 16.5 160 191-351 2-173 (174)
40 KOG4407 Predicted Rho GTPase-a 100.0 1.6E-30 3.4E-35 291.6 16.6 193 168-363 1152-1361(1973)
41 cd00159 RhoGAP RhoGAP: GTPase- 100.0 5.7E-30 1.2E-34 236.1 15.7 157 193-350 1-168 (169)
42 KOG4269 Rac GTPase-activating 100.0 1.2E-29 2.7E-34 278.6 13.0 166 165-330 891-1070(1112)
43 PF00620 RhoGAP: RhoGAP domain 99.9 2.2E-28 4.7E-33 223.0 7.6 138 193-331 1-149 (151)
44 KOG1450 Predicted Rho GTPase-a 99.9 1.6E-27 3.4E-32 259.7 13.1 183 170-356 453-648 (650)
45 KOG1451 Oligophrenin-1 and rel 99.9 5.4E-27 1.2E-31 249.4 14.8 163 194-357 390-568 (812)
46 KOG4406 CDC42 Rho GTPase-activ 99.9 4.7E-27 1E-31 243.3 12.6 189 166-356 246-445 (467)
47 KOG2710 Rho GTPase-activating 99.9 1.4E-24 3E-29 228.1 12.8 166 190-356 92-291 (412)
48 KOG1453 Chimaerin and related 99.9 2.8E-24 6.1E-29 247.2 11.8 179 173-355 602-796 (918)
49 KOG3564 GTPase-activating prot 99.9 3.5E-23 7.5E-28 216.7 15.9 160 190-351 360-533 (604)
50 KOG1117 Rho- and Arf-GTPase ac 99.9 5.8E-24 1.3E-28 233.3 8.6 162 189-357 724-897 (1186)
51 KOG1452 Predicted Rho GTPase-a 99.7 2E-17 4.4E-22 166.9 14.7 154 170-327 181-350 (442)
52 KOG4724 Predicted Rho GTPase-a 99.7 3.8E-18 8.3E-23 184.7 6.4 213 129-363 53-277 (741)
53 KOG4271 Rho-GTPase activating 99.6 3E-16 6.5E-21 174.7 8.9 151 171-326 915-1076(1100)
54 cd04401 RhoGAP_fMSB1 RhoGAP_fM 99.6 4.5E-15 9.7E-20 143.8 14.5 138 193-331 7-167 (198)
55 cd04405 RhoGAP_BRCC3-like RhoG 99.5 2.1E-13 4.6E-18 134.3 10.7 137 212-356 60-228 (235)
56 KOG4370 Ral-GTPase effector RL 99.2 1.4E-10 3E-15 121.4 10.4 137 188-325 67-253 (514)
57 KOG3565 Cdc42-interacting prot 99.0 4.4E-10 9.5E-15 125.5 8.0 139 188-328 214-365 (640)
58 PF08101 DUF1708: Domain of un 98.3 8.6E-06 1.9E-10 87.5 14.3 164 192-356 8-203 (420)
59 KOG4724 Predicted Rho GTPase-a 97.6 6.9E-05 1.5E-09 83.0 4.7 155 171-330 414-590 (741)
60 KOG1453 Chimaerin and related 95.6 0.026 5.6E-07 66.8 7.2 157 173-331 462-670 (918)
61 KOG1449 Predicted Rho GTPase-a 93.9 0.015 3.2E-07 64.3 -0.4 58 297-354 1-67 (670)
62 KOG4271 Rho-GTPase activating 86.0 0.83 1.8E-05 53.5 4.4 153 170-327 353-536 (1100)
63 KOG1449 Predicted Rho GTPase-a 84.9 0.2 4.2E-06 55.8 -1.2 143 171-331 207-356 (670)
64 smart00285 PBD P21-Rho-binding 66.0 3.3 7.2E-05 29.7 1.2 28 131-158 1-29 (36)
65 cd00132 CRIB PAK (p21 activate 60.4 5.5 0.00012 29.6 1.5 20 129-148 1-20 (42)
66 PF09026 CENP-B_dimeris: Centr 53.0 4.5 9.8E-05 35.5 0.0 8 108-115 80-87 (101)
67 cd01093 CRIB_PAK_like PAK (p21 48.1 8.4 0.00018 29.1 0.8 28 130-157 2-30 (46)
68 PF00786 PBD: P21-Rho-binding 34.6 13 0.00027 29.5 -0.1 28 130-157 1-29 (59)
69 PF10446 DUF2457: Protein of u 34.4 20 0.00043 39.4 1.3 7 443-449 422-428 (458)
70 KOG4370 Ral-GTPase effector RL 30.5 47 0.001 36.5 3.3 34 240-273 118-151 (514)
71 PF10446 DUF2457: Protein of u 30.4 27 0.00058 38.4 1.5 6 326-331 285-290 (458)
No 1
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-43 Score=380.39 Aligned_cols=250 Identities=52% Similarity=0.777 Sum_probs=231.9
Q ss_pred ccccccCCCCCccccCCCCcccccccCceehhhhcc---ccCCCCccCCCCCCCCCCCCCccccccccccccccCCCCCC
Q 010138 115 SLVTCSVEGEDEASMDISWPTEVRHVSHVTFDRFNG---FLGLPTELEPEVPRKAPSASVSVFGVSAKSMQCSYDDRGNS 191 (517)
Q Consensus 115 sl~~~~~~~~dl~~~~igwpt~vr~ls~it~~rf~~---~lGlP~~~~~~~pr~~p~~~~~vFGv~L~~L~~~~~~~g~~ 191 (517)
..+-+.+..++.+.+.|+|++++++..+++|++|.+ ++|+|.+.++.++++.+.+...+|||+++.+++.++.++..
T Consensus 85 ~~~~~~~~e~e~~~~kie~~~d~~~~~~~~f~~~~~~~~f~~~~~e~q~~~~rrals~~~~vfgv~~~s~Q~s~~~~~n~ 164 (577)
T KOG4270|consen 85 AKIDTLKEEEEECGMKIEQPTDQRHADHVTFDRKEGEYLFLGLPVEFQPDYHRRALSASETVFGVSTEAMQLSYDPRGNF 164 (577)
T ss_pred chhhhhhchHHhhcCccccCcchhhhhhhhhhhhcchhhhccchhhhccccccccccchhhhhcchHHhhhcccccCCCc
Confidence 444555677799999999999999999999999999 99999999999999999999999999999999999998888
Q ss_pred ccHHHHHHHH-HHHHcCCCccCCceeccCChhHHHHHHHHHhcCCCCCC--CchhhhHHHHHHHHHhCCCCCCCCCChHH
Q 010138 192 VPTILLMMQR-HLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVVPHG--IDVHCLAGLIKAWLRELPTGVLDSLTPDQ 268 (517)
Q Consensus 192 VP~IL~~~i~-~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~~~~~--~D~h~VAsLLK~fLReLPePLlp~~ly~~ 268 (517)
||.|+..++. +||.+.|++.|||||++|...+++.||++||.|..+.. .|||+||++||.||||||+||+++.+|++
T Consensus 165 vp~i~~l~~~~~l~~e~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~~iDvH~~agllKayLRELPepvl~~nL~~e 244 (577)
T KOG4270|consen 165 VPLILHLLQSGRLLLEGGLKEEGLFRINGEASKVERLREALDCGVVPDQLYIDVHCLAGLLKAYLRELPEPVLTFNLYKE 244 (577)
T ss_pred chhhhHhhhhhhhhhhcCccccceeccCCCchHHHHHHHHHcCCcccccccCCHHHHHHHHHHHHHhCCCcCCCcccCHH
Confidence 9999999999 99999999999999999999999999999999998776 99999999999999999999999999999
Q ss_pred Hhhc---ccHH----HHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhhhHHhhhcccCCCCChhHHHHHHHHH
Q 010138 269 VMHC---NTEE----DCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAPNMTQMADPLTALIHAVQV 341 (517)
Q Consensus 269 ~i~~---~~~e----~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLAiVFaPnLlr~~d~~~~l~~~~~~ 341 (517)
|+.+ +.++ .++.++.+||+.|+.+|+|+|.||++|+++++.|||+++||||||||||+|+.++.++++.++++
T Consensus 245 ~~qv~~~~~e~~~~q~lr~~~~~LPp~n~slL~yli~flA~v~~~~~vNKMs~~NlAiV~gPNl~~~~~p~~~l~~avqv 324 (577)
T KOG4270|consen 245 WTQVQNCENEDEKVQLLRQCLQKLPPTNYSLLRYLIRFLADVVEKEHVNKMSARNLAIVFGPNLLWMKDPLTALMYAVQV 324 (577)
T ss_pred HHHHHhccCHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhhhcccchhhceeEecCCccccCChHHHHHHHHHH
Confidence 8765 3333 35566669999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHhhhc
Q 010138 342 MNFLKTLILKILREREEAAAKAR 364 (517)
Q Consensus 342 ~~~v~~LIen~l~~fee~~~~a~ 364 (517)
+++++.||+.+++.++......-
T Consensus 325 s~~~~~lie~~l~~~~~~~~g~~ 347 (577)
T KOG4270|consen 325 SNFLKGLIEKTLEERDTSFPGEL 347 (577)
T ss_pred HHHHHHHHHHHHHhhhccCCccc
Confidence 99999999999999987766543
No 2
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group
Probab=100.00 E-value=1e-39 Score=312.65 Aligned_cols=176 Identities=20% Similarity=0.431 Sum_probs=160.0
Q ss_pred ccccccccccccccCCCCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCCCC-----CCCchhhhH
Q 010138 172 SVFGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVVP-----HGIDVHCLA 246 (517)
Q Consensus 172 ~vFGv~L~~L~~~~~~~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~~~-----~~~D~h~VA 246 (517)
++||++|+++.. ..+..||.+|.+|++|| +++|+++|||||++|+..+++.+++.|++|..+ ...|+|+||
T Consensus 1 k~FG~~L~~~~~---~~~~~IP~~v~~~i~~l-~~~gl~~EGIFRv~G~~~~i~~l~~~~d~g~~~~~~~~~~~d~~~va 76 (188)
T cd04383 1 KLFNGSLEEYIQ---DSGQAIPLVVESCIRFI-NLYGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHDINSVA 76 (188)
T ss_pred CcCCccHHHHHH---HCCCCCChHHHHHHHHH-HHcCCCCCCeeecCCCHHHHHHHHHHHhcCCCccccccccccHHHHH
Confidence 489999999853 34678999999999998 689999999999999999999999999998642 468999999
Q ss_pred HHHHHHHHhCCCCCCCCCChHHHhhccc-------HHHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhhhHH
Q 010138 247 GLIKAWLRELPTGVLDSLTPDQVMHCNT-------EEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAM 319 (517)
Q Consensus 247 sLLK~fLReLPePLlp~~ly~~~i~~~~-------~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLAi 319 (517)
++||.|||+||+||||.++|+.|+++.+ ...++.++.+||+.|+.+|+||+.||++|+++++.|||+++|||+
T Consensus 77 ~lLK~fLReLPepLip~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAi 156 (188)
T cd04383 77 GVLKLYFRGLENPLFPKERFEDLMSCVKLENPTERVHQIREILSTLPRSVIIVMRYLFAFLNHLSQFSDENMMDPYNLAI 156 (188)
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhhCCCccccee
Confidence 9999999999999999999999988732 346888999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCChhHHHHHHHHHHHHHHHHHHH
Q 010138 320 VFAPNMTQMADPLTALIHAVQVMNFLKTLILK 351 (517)
Q Consensus 320 VFaPnLlr~~d~~~~l~~~~~~~~~v~~LIen 351 (517)
||||+|++.++....+....+++++++.||.+
T Consensus 157 vf~P~L~~~p~~~~~~~~~~~~~~~~~~li~~ 188 (188)
T cd04383 157 CFGPTLMPVPEGQDQVSCQAHVNELIKTIIIH 188 (188)
T ss_pred eeeccccCCCCCccHHHHHHHHHHHHHHHhcC
Confidence 99999999988877888889999999999863
No 3
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=100.00 E-value=7.3e-39 Score=308.52 Aligned_cols=184 Identities=27% Similarity=0.420 Sum_probs=160.4
Q ss_pred ccccccccccccccCCC-CCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCCC---CCCCchhhhHH
Q 010138 172 SVFGVSAKSMQCSYDDR-GNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVV---PHGIDVHCLAG 247 (517)
Q Consensus 172 ~vFGv~L~~L~~~~~~~-g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~~---~~~~D~h~VAs 247 (517)
+|||++|++++...... ...||.+|.+|++|| +++|+++|||||++|+..+++++++.+|+|.. ....|+|+||+
T Consensus 1 ~iFG~~L~~~~~~~~~~~~~~iP~~i~~~i~~l-~~~gl~~eGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~d~h~va~ 79 (199)
T cd04390 1 GVFGQRLEDTVAYERKFGPRLVPILVEQCVDFI-REHGLKEEGLFRLPGQANLVKQLQDAFDAGERPSFDSDTDVHTVAS 79 (199)
T ss_pred CcCCccHHHHHHHhcccCCCCCChHHHHHHHHH-HHcCCCCCCeeeCCCCHHHHHHHHHHHhCCCCCCccccCCHHHHHH
Confidence 48999999975432222 246999999999998 67999999999999999999999999999864 24689999999
Q ss_pred HHHHHHHhCCCCCCCCCChHHHhhccc---------HHHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhhhH
Q 010138 248 LIKAWLRELPTGVLDSLTPDQVMHCNT---------EEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIA 318 (517)
Q Consensus 248 LLK~fLReLPePLlp~~ly~~~i~~~~---------~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLA 318 (517)
+||+|||+||+||+|.+.|+.|+.+.+ ..+++.++.+||+.|+.+|.||+.||++|+++++.|||++.|||
T Consensus 80 lLK~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~l~~~l~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA 159 (199)
T cd04390 80 LLKLYLRELPEPVIPWAQYEDFLSCAQLLSKDEEKGLGELMKQVSILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNLA 159 (199)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHhccCccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHH
Confidence 999999999999999999999987532 24578889999999999999999999999999999999999999
Q ss_pred HhhhcccCCCC--ChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 010138 319 MVFAPNMTQMA--DPLTALIHAVQVMNFLKTLILKILRER 356 (517)
Q Consensus 319 iVFaPnLlr~~--d~~~~l~~~~~~~~~v~~LIen~l~~f 356 (517)
+||||+|+|+. ++...+.....++.+++.||.++-..|
T Consensus 160 ivf~P~llr~~~~~~~~~~~~~~~~~~~~~~lI~~~~~~F 199 (199)
T cd04390 160 TVFGPNILRPKVEDPATIMEGTPQIQQLMTVMISKHEPLF 199 (199)
T ss_pred HHhccccCCCCCCCHHHHHhccHHHHHHHHHHHHhhhhcC
Confidence 99999999986 456667778888999999998875543
No 4
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT
Probab=100.00 E-value=1.9e-38 Score=304.87 Aligned_cols=179 Identities=23% Similarity=0.373 Sum_probs=156.5
Q ss_pred ccccccccccccCCCCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcC-CC--C---CCCchhhhHH
Q 010138 174 FGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKG-VV--P---HGIDVHCLAG 247 (517)
Q Consensus 174 FGv~L~~L~~~~~~~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g-~~--~---~~~D~h~VAs 247 (517)
||++|+.+... .+..||.+|.+|++|| +++|+++|||||++|+..+|+++++.+|++ .. . ...|+|+||+
T Consensus 1 FG~~L~~~~~~---~~~~iP~iv~~ci~~l-~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~ 76 (194)
T cd04372 1 YGCDLTTLVKA---HNTQRPMVVDMCIREI-EARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITG 76 (194)
T ss_pred CCCChHHHHHH---cCCCCChHHHHHHHHH-HHcCCCcCceeecCCcHHHHHHHHHHHcCCCCccCCcccccccHHHHHH
Confidence 99999998643 3568999999999998 689999999999999999999999999974 21 1 2358999999
Q ss_pred HHHHHHHhCCCCCCCCCChHHHhhccc-------HHHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhhhHHh
Q 010138 248 LIKAWLRELPTGVLDSLTPDQVMHCNT-------EEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMV 320 (517)
Q Consensus 248 LLK~fLReLPePLlp~~ly~~~i~~~~-------~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLAiV 320 (517)
+||.|||+||+||||.++|+.|+++.+ .+.++.++.+||+.|+.+|+||+.||++|+++++.|||++.|||+|
T Consensus 77 lLK~flReLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLaiv 156 (194)
T cd04372 77 ALKLYFRDLPIPVITYDTYPKFIDAAKISNPDERLEAVHEALMLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIV 156 (194)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 999999999999999999999988632 3468889999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCh--hHHHHHHHHHHHHHHHHHHHHHHhh
Q 010138 321 FAPNMTQMADP--LTALIHAVQVMNFLKTLILKILRER 356 (517)
Q Consensus 321 FaPnLlr~~d~--~~~l~~~~~~~~~v~~LIen~l~~f 356 (517)
|||+|+++++. ...+.+......+++.||+++-+.|
T Consensus 157 f~P~Ll~~~~~~~~~~~~~~~~~~~iv~~LI~~~~~iF 194 (194)
T cd04372 157 FGPTLMRPPEDSALTTLNDMRYQILIVQLLITNEDVLF 194 (194)
T ss_pred HhcccCCCCCccHHHHHHhHHHHHHHHHHHHHhhHhhC
Confidence 99999998763 3445566677889999999987654
No 5
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=4.3e-38 Score=301.09 Aligned_cols=172 Identities=27% Similarity=0.462 Sum_probs=154.2
Q ss_pred ccccccccccccCCCCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCCC---CCCCchhhhHHHHH
Q 010138 174 FGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVV---PHGIDVHCLAGLIK 250 (517)
Q Consensus 174 FGv~L~~L~~~~~~~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~~---~~~~D~h~VAsLLK 250 (517)
|||+|+.+. . .+..||.+|.+|++|| +++|+++|||||++|+..+++.|++.++.|.. ...+|+|+||++||
T Consensus 1 FGv~L~~~~-~---~~~~vP~il~~~i~~l-~~~gl~~EGIfR~~Gs~~~i~~l~~~~~~~~~~~~~~~~d~h~va~lLK 75 (186)
T cd04407 1 FGVRVGSLT-S---NKTSVPIVLEKLLEHV-EMHGLYTEGIYRKSGSANRMKELHQLLQADPENVKLENYPIHAITGLLK 75 (186)
T ss_pred CCCcHHHHH-h---CCCCCCcHHHHHHHHH-HHcCCCCCceeecCCCHHHHHHHHHHHhcCCcccCcccCCHHHHHHHHH
Confidence 999999974 2 3568999999999998 78999999999999999999999999998742 35789999999999
Q ss_pred HHHHhCCCCCCCCCChHHHhhcc-------cHHHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhhhHHhhhc
Q 010138 251 AWLRELPTGVLDSLTPDQVMHCN-------TEEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAP 323 (517)
Q Consensus 251 ~fLReLPePLlp~~ly~~~i~~~-------~~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLAiVFaP 323 (517)
.|||+||+||||+++|+.|+.+. +..+++.++.+||+.|+.+|++|+.||++|+++++.|||++.|||+||||
T Consensus 76 ~flReLPepLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivfaP 155 (186)
T cd04407 76 QWLRELPEPLMTFAQYNDFLRAVELPEKQEQLQAIYRVLEQLPTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVFAP 155 (186)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccCCCChhHHHHhhhc
Confidence 99999999999999999998762 23568889999999999999999999999999999999999999999999
Q ss_pred ccCCCC---ChhHHHHHHHHHHHHHHHHHH
Q 010138 324 NMTQMA---DPLTALIHAVQVMNFLKTLIL 350 (517)
Q Consensus 324 nLlr~~---d~~~~l~~~~~~~~~v~~LIe 350 (517)
+|+|.+ ++...+.+..++..+++.||.
T Consensus 156 ~Ll~~~~~~d~~~~~~~~~~~~~~v~~li~ 185 (186)
T cd04407 156 CLLRCPDSSDPLTSMKDVAKTTTCVEMLIK 185 (186)
T ss_pred cccCCCCCCCHHHHHHhhhhhHHHHHHHhh
Confidence 999975 356677788888888888885
No 6
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.6e-38 Score=304.72 Aligned_cols=174 Identities=22% Similarity=0.340 Sum_probs=153.5
Q ss_pred ccccccccccccCCCCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCCC---CCCCchhhhHHHHH
Q 010138 174 FGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVV---PHGIDVHCLAGLIK 250 (517)
Q Consensus 174 FGv~L~~L~~~~~~~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~~---~~~~D~h~VAsLLK 250 (517)
|||+|+.+.. ..+..||.+|.+|++|| +++|+++|||||++|+..++++|++.+++|.. ....|+|+||++||
T Consensus 1 FGv~l~~l~~---~~~~~vP~iv~~ci~~i-~~~gl~~eGIfR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK 76 (200)
T cd04408 1 FGVDFSQLPR---DFPEEVPFVVVRCTAEI-ENRALGVQGIYRISGSKARVEKLCQAFENGRDLVDLSGHSPHDITSVLK 76 (200)
T ss_pred CCCCHHHHHH---hCCCCCChHHHHHHHHH-HHcCCCCcceeeCCCcHHHHHHHHHHHhcCCCccCcccCCHHHHHHHHH
Confidence 9999999864 33577999999999998 68999999999999999999999999999863 35789999999999
Q ss_pred HHHHhCCCCCCCCCChHHHhhccc-------------------HHHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCC
Q 010138 251 AWLRELPTGVLDSLTPDQVMHCNT-------------------EEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNK 311 (517)
Q Consensus 251 ~fLReLPePLlp~~ly~~~i~~~~-------------------~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NK 311 (517)
+|||+||+||||+++|+.|+++.+ .+.++.++.+||+.|+.+|+||+.||++|+++++.||
T Consensus 77 ~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~li~~LP~~n~~~L~~L~~~L~~V~~~~~~Nk 156 (200)
T cd04408 77 HFLKELPEPVLPFQLYDDFIALAKELQRDSEKAAESPSIVENIIRSLKELLGRLPVSNYNTLRHLMAHLYRVAERFEDNK 156 (200)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 999999999999999999987521 3468889999999999999999999999999999999
Q ss_pred CChhhhHHhhhcccCCCCCh----hHHHHHHHHHHHHHHHHHHH
Q 010138 312 MNARNIAMVFAPNMTQMADP----LTALIHAVQVMNFLKTLILK 351 (517)
Q Consensus 312 Mt~~NLAiVFaPnLlr~~d~----~~~l~~~~~~~~~v~~LIen 351 (517)
|++.|||+||||+|++++.. +.++.+......+|+.||.|
T Consensus 157 M~~~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~q~~~ve~li~~ 200 (200)
T cd04408 157 MSPNNLGIVFGPTLLRPLVGGDVSMICLLDTGYQAQLVEFLISN 200 (200)
T ss_pred CCHhHhhhhhccccCCCCCCCchHHHHHhccchHHHHHHHHhhC
Confidence 99999999999999998752 44556666777788888764
No 7
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.9e-38 Score=300.91 Aligned_cols=178 Identities=29% Similarity=0.447 Sum_probs=159.7
Q ss_pred ccccccccccccC--CCCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCCCC--CCCchhhhHHHH
Q 010138 174 FGVSAKSMQCSYD--DRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVVP--HGIDVHCLAGLI 249 (517)
Q Consensus 174 FGv~L~~L~~~~~--~~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~~~--~~~D~h~VAsLL 249 (517)
||++|++++.... ..+..||.+|..|+++|++.+|+++|||||++|+..+++++++.+|.|.+. ...|+|+||++|
T Consensus 1 FG~~L~~~~~r~~~~~~~~~iP~il~~~i~~l~~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~d~h~va~lL 80 (187)
T cd04389 1 FGSSLEEIMDRQKEKYPELKLPWILTFLSEKVLALGGFQTEGIFRVPGDIDEVNELKLRVDQWDYPLSGLEDPHVPASLL 80 (187)
T ss_pred CCCCHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCcCCCeeeCCCCHHHHHHHHHHHhcCCCCccccCCHHHHHHHH
Confidence 9999999853322 235689999999999998889999999999999999999999999999764 467999999999
Q ss_pred HHHHHhCCCCCCCCCChHHHhhc-ccHHHHHHHHHhcChhHHHHHHHHHHHhhHhhhcc--ccCCCChhhhHHhhhcccC
Q 010138 250 KAWLRELPTGVLDSLTPDQVMHC-NTEEDCTQLVKLLPPSEAALLDWAINLMADVVQHE--QYNKMNARNIAMVFAPNMT 326 (517)
Q Consensus 250 K~fLReLPePLlp~~ly~~~i~~-~~~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s--~~NKMt~~NLAiVFaPnLl 326 (517)
|+|||+||+||+|.++|++++.+ .+.+.+++++.+||+.|+.+|.||+.||++|++++ +.|||+++|||+||||+|+
T Consensus 81 K~fLReLpePli~~~~~~~~i~~~~~~~~~~~li~~LP~~n~~~L~~l~~~L~~v~~~~~~~~NkM~~~NLAivf~P~l~ 160 (187)
T cd04389 81 KLWLRELEEPLIPDALYQQCISASEDPDKAVEIVQKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAMVFAPNIL 160 (187)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHhhcCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHccccC
Confidence 99999999999999999999986 46778999999999999999999999999999754 7899999999999999999
Q ss_pred CCC--ChhHHHHHHHHHHHHHHHHHHH
Q 010138 327 QMA--DPLTALIHAVQVMNFLKTLILK 351 (517)
Q Consensus 327 r~~--d~~~~l~~~~~~~~~v~~LIen 351 (517)
+.+ ++...+.+..+.+.+++.||+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~lI~~ 187 (187)
T cd04389 161 RCTSDDPRVIFENTRKEMSFLRTLIEH 187 (187)
T ss_pred CCCCCCHHHHHHccHHHHHHHHHHhcC
Confidence 864 5667778889999999999975
No 8
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=7.7e-38 Score=299.07 Aligned_cols=173 Identities=20% Similarity=0.392 Sum_probs=150.9
Q ss_pred ccccccccccccCCCCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCCCC-----CCCchhhhHHH
Q 010138 174 FGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVVP-----HGIDVHCLAGL 248 (517)
Q Consensus 174 FGv~L~~L~~~~~~~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~~~-----~~~D~h~VAsL 248 (517)
||+||+++.. +.+..||.+|.+|++|| +++|+++|||||++|+...+++|+..+|.|... ...|+|+||++
T Consensus 1 FGv~L~~~~~---~~~~~iP~~l~~~i~~l-~~~gl~~eGIFR~sg~~~~v~~l~~~~d~~~~~~~~~~~~~d~h~va~l 76 (187)
T cd04403 1 FGCHLEALCQ---RENSTVPKFVRLCIEAV-EKRGLDVDGIYRVSGNLAVIQKLRFAVDHDEKLDLDDSKWEDIHVITGA 76 (187)
T ss_pred CCCChHHHHH---HcCCCCChHHHHHHHHH-HHhCCCcCceeeecCcHHHHHHHHHHhcCCCCCCccccccccHHHHHHH
Confidence 9999999853 23678999999999998 689999999999999999999999999987542 35699999999
Q ss_pred HHHHHHhCCCCCCCCCChHHHhhccc-------HHHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhhhHHhh
Q 010138 249 IKAWLRELPTGVLDSLTPDQVMHCNT-------EEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVF 321 (517)
Q Consensus 249 LK~fLReLPePLlp~~ly~~~i~~~~-------~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLAiVF 321 (517)
||.|||+||+||||+.+|+.|+++.+ .++++.++.+||+.|+.+|+||+.||++|+++++.|||++.|||+||
T Consensus 77 LK~fLReLPepLi~~~~~~~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLAivf 156 (187)
T cd04403 77 LKLFFRELPEPLFPYSLFNDFVAAIKLSDYEQRVSAVKDLIKSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVF 156 (187)
T ss_pred HHHHHhcCCCCcCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccccCChHHhhhhc
Confidence 99999999999999999999987632 34688899999999999999999999999999999999999999999
Q ss_pred hcccCCCCChhHHH-HHHHHHHHHHHHHHH
Q 010138 322 APNMTQMADPLTAL-IHAVQVMNFLKTLIL 350 (517)
Q Consensus 322 aPnLlr~~d~~~~l-~~~~~~~~~v~~LIe 350 (517)
||+|+|++.....+ .+......+++.||+
T Consensus 157 ~P~ll~~~~~~~~~~~~~~~~~~~ve~l~~ 186 (187)
T cd04403 157 GPTLLRPEQETGNIAVHMVYQNQIVELILL 186 (187)
T ss_pred cccccCCCCcchHHHHHhHHHHHHHHHHhh
Confidence 99999997654333 355566677777775
No 9
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.9e-38 Score=303.41 Aligned_cols=174 Identities=21% Similarity=0.405 Sum_probs=149.9
Q ss_pred ccccccccccccccCCCCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCCCC------CCCchhhh
Q 010138 172 SVFGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVVP------HGIDVHCL 245 (517)
Q Consensus 172 ~vFGv~L~~L~~~~~~~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~~~------~~~D~h~V 245 (517)
++||++|+++.. +.+..||.+|..|++|| +++|+ +|||||++|+..++++|++.+|+|... ...|+|+|
T Consensus 1 ~vFG~~L~~~~~---~~g~~iP~il~~~i~~l-~~~g~-~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~v 75 (195)
T cd04384 1 RVFGCDLTEHLL---NSGQDVPQVLKSCTEFI-EKHGI-VDGIYRLSGIASNIQRLRHEFDSEQIPDLTKDVYIQDIHSV 75 (195)
T ss_pred CcCCccHHHHHH---HcCCCCChHHHHHHHHH-HHcCC-CcCeeeCCCCHHHHHHHHHHHcCCCCCCcccccccccHHHH
Confidence 589999998753 24678999999999998 78898 699999999999999999999998643 24699999
Q ss_pred HHHHHHHHHhCCCCCCCCCChHHHhhccc-------HHHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhhhH
Q 010138 246 AGLIKAWLRELPTGVLDSLTPDQVMHCNT-------EEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIA 318 (517)
Q Consensus 246 AsLLK~fLReLPePLlp~~ly~~~i~~~~-------~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLA 318 (517)
|++||.|||+||+||||+.+|+.|+++.. .+.++.++.+||+.|+.+|+||+.||++|+++++.|||+++|||
T Consensus 76 a~lLK~flReLPePLi~~~~y~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA 155 (195)
T cd04384 76 SSLCKLYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHDVIQQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLA 155 (195)
T ss_pred HHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHhh
Confidence 99999999999999999999999987632 34678899999999999999999999999999999999999999
Q ss_pred HhhhcccCCCCCh-------hHHHHHHHHHHHHHHHHHH
Q 010138 319 MVFAPNMTQMADP-------LTALIHAVQVMNFLKTLIL 350 (517)
Q Consensus 319 iVFaPnLlr~~d~-------~~~l~~~~~~~~~v~~LIe 350 (517)
+||||+|+++++. ..+++.......++++||.
T Consensus 156 ivf~P~L~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~ 194 (195)
T cd04384 156 IVWAPNLLRSKQIESACFSGTAAFMEVRIQSVVVEFILN 194 (195)
T ss_pred HhhhhhcCCCCccccccchHHHHHHHHhhhhhheehhhc
Confidence 9999999998763 2345555555566666664
No 10
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.1e-37 Score=299.21 Aligned_cols=185 Identities=28% Similarity=0.360 Sum_probs=164.6
Q ss_pred CCccccccccccccccCCCCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCCCC--CC-CchhhhH
Q 010138 170 SVSVFGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVVP--HG-IDVHCLA 246 (517)
Q Consensus 170 ~~~vFGv~L~~L~~~~~~~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~~~--~~-~D~h~VA 246 (517)
+..+||++|+.+.+ ....+..||.+|.+|++|| +++|+++|||||++|+..+++++++.+|+|... +. .|+|+||
T Consensus 2 ~~~~FGv~L~~~~~-~~~~~~~iP~il~~~i~~l-~~~g~~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va 79 (195)
T cd04404 2 PTQQFGVSLQFLKE-KNPEQEPIPPVVRETVEYL-QAHALTTEGIFRRSANTQVVKEVQQKYNMGEPVDFDQYEDVHLPA 79 (195)
T ss_pred CCCcCCCcHHHHHH-hCCCCCCCChHHHHHHHHH-HHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCcccccCHHHHH
Confidence 35799999999854 3333478999999999998 569999999999999999999999999998643 33 3999999
Q ss_pred HHHHHHHHhCCCCCCCCCChHHHhhcc------cHHHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhhhHHh
Q 010138 247 GLIKAWLRELPTGVLDSLTPDQVMHCN------TEEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMV 320 (517)
Q Consensus 247 sLLK~fLReLPePLlp~~ly~~~i~~~------~~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLAiV 320 (517)
++||+|||+||+|||+.+.|+.++.+. +.+.++.++.+||+.|+.+|.+|+.||++|+++++.|||++.|||+|
T Consensus 80 ~~LK~~lr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~~~i~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLa~v 159 (195)
T cd04404 80 VILKTFLRELPEPLLTFDLYDDIVGFLNVDKEERVERVKQLLQTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVV 159 (195)
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHhHhhee
Confidence 999999999999999999999998753 33568899999999999999999999999999999999999999999
Q ss_pred hhcccCCCCChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 010138 321 FAPNMTQMADPLTALIHAVQVMNFLKTLILKILRER 356 (517)
Q Consensus 321 FaPnLlr~~d~~~~l~~~~~~~~~v~~LIen~l~~f 356 (517)
|||+|+|+++....+....+...+++.||+|+-++|
T Consensus 160 faP~l~~~~~~~~~l~~~~~~~~~~~~LI~~~~~iF 195 (195)
T cd04404 160 FGPNLLWAKDASMSLSAINPINTFTKFLLDHQDEIF 195 (195)
T ss_pred eeccccCCCCcccCHHHHHHHHHHHHHHHHhHHhhC
Confidence 999999998876677788888899999999998765
No 11
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.7e-37 Score=304.34 Aligned_cols=182 Identities=21% Similarity=0.307 Sum_probs=157.8
Q ss_pred CccccccccccccccCCCCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCC---CCCCCchhhhHH
Q 010138 171 VSVFGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGV---VPHGIDVHCLAG 247 (517)
Q Consensus 171 ~~vFGv~L~~L~~~~~~~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~---~~~~~D~h~VAs 247 (517)
.++||+||..+++ +.+..||.+|..|++|| +.+|+++|||||++|+..+++.|++.++.+. ..+..++|+||+
T Consensus 2 ~~vFGvpL~~~~~---r~g~~IP~~i~~~i~~L-~~~gl~~eGIFR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~va~ 77 (220)
T cd04375 2 KNVFGVPLLVNLQ---RTGQPLPRSIQQAMRWL-RNNALDQVGLFRKSGVKSRIQKLRSMIESSTDNVNYDGQQAYDVAD 77 (220)
T ss_pred CCEecCcHHHHHh---hcCCCCChHHHHHHHHH-HHhCCCccceeecCCcHHHHHHHHHHHhcCCCccCcccccHHHHHH
Confidence 4699999987753 34678999999999998 6899999999999999999999999999853 235689999999
Q ss_pred HHHHHHHhCCCCCCCCCChHHHhhcc-------cHHHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhhhHHh
Q 010138 248 LIKAWLRELPTGVLDSLTPDQVMHCN-------TEEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMV 320 (517)
Q Consensus 248 LLK~fLReLPePLlp~~ly~~~i~~~-------~~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLAiV 320 (517)
+||+|||+||+||||.++|+.|+++. +.++++.++.+||+.|+.+|++|+.||++|+++++.|||+++|||+|
T Consensus 78 lLK~flReLPePLlt~~l~~~fi~~~~~~~~~~~~~~l~~~i~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAiv 157 (220)
T cd04375 78 MLKQYFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCAILLLPDENREVLQTLLYFLSDVAANSQENQMTATNLAVC 157 (220)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHH
Confidence 99999999999999999999998752 23568889999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCh---------------------hHHHHHHHHHHHHHHHHHHHHHHhh
Q 010138 321 FAPNMTQMADP---------------------LTALIHAVQVMNFLKTLILKILRER 356 (517)
Q Consensus 321 FaPnLlr~~d~---------------------~~~l~~~~~~~~~v~~LIen~l~~f 356 (517)
|||+||+.... ...+.+......++..||+|+-+.|
T Consensus 158 faP~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~v~~lI~~~~~lf 214 (220)
T cd04375 158 LAPSLFHLNTSRRENSSPARRMQRKKSLGKPDQKELSENKAAHQCLAYMIEECNTLF 214 (220)
T ss_pred HhhhhcCCCCCCcccccchhhhccccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999987432 2234455566778889999887766
No 12
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins. The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.3e-37 Score=303.89 Aligned_cols=184 Identities=27% Similarity=0.358 Sum_probs=159.6
Q ss_pred cccccccccccccC--CCCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCCC-----CCCCchhhh
Q 010138 173 VFGVSAKSMQCSYD--DRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVV-----PHGIDVHCL 245 (517)
Q Consensus 173 vFGv~L~~L~~~~~--~~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~~-----~~~~D~h~V 245 (517)
|||+||+++..... ..+..||.+|.+|++|| +++|+++|||||++|+..++++|++.++.+.. ....|+|+|
T Consensus 1 vFGv~L~~l~~~~~~~~~~~~iP~~l~~~i~~l-~~~gl~~EGIFR~~G~~~~i~~l~~~ld~~~~~~~~~~~~~~~h~v 79 (216)
T cd04391 1 LFGVPLSTLLERDQKKVPGSKVPLIFQKLINKL-EERGLETEGILRIPGSAQRVKFLCQELEAKFYEGTFLWDQVKQHDA 79 (216)
T ss_pred CCCCCHHHHHHHhcccCCCCCCCcHHHHHHHHH-HHcCCCcCceeecCCcHHHHHHHHHHHhcccccCccccccCCHHHH
Confidence 79999999864322 24678999999999998 68999999999999999999999999997632 356899999
Q ss_pred HHHHHHHHHhCCCCCCCCCChHHHhhccc-------HHHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhhhH
Q 010138 246 AGLIKAWLRELPTGVLDSLTPDQVMHCNT-------EEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIA 318 (517)
Q Consensus 246 AsLLK~fLReLPePLlp~~ly~~~i~~~~-------~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLA 318 (517)
|++||+|||+||+||||.++|+.|+.+.. .++++.++.+||+.|+.+|+||+.||++|+++++.|||++.|||
T Consensus 80 a~lLK~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA 159 (216)
T cd04391 80 ASLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQALNLLVLLLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVA 159 (216)
T ss_pred HHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHccccCCCChHHHH
Confidence 99999999999999999999999988632 34577889999999999999999999999999999999999999
Q ss_pred HhhhcccCCCCC--------hhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 010138 319 MVFAPNMTQMAD--------PLTALIHAVQVMNFLKTLILKILRERE 357 (517)
Q Consensus 319 iVFaPnLlr~~d--------~~~~l~~~~~~~~~v~~LIen~l~~fe 357 (517)
+||||+||++.. ....+..+.....+++.||+++-+.|.
T Consensus 160 ivfaP~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~if~ 206 (216)
T cd04391 160 MIMAPNLFPPRGKHSKDNESLQEEVNMAAGCANIMRLLIRYQDLLWT 206 (216)
T ss_pred HHhccccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 999999998753 123455667778999999999888774
No 13
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.1e-37 Score=301.35 Aligned_cols=185 Identities=23% Similarity=0.325 Sum_probs=161.5
Q ss_pred CccccccccccccccCCCCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCCCC-----CCCchhhh
Q 010138 171 VSVFGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVVP-----HGIDVHCL 245 (517)
Q Consensus 171 ~~vFGv~L~~L~~~~~~~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~~~-----~~~D~h~V 245 (517)
.++||+||+++... .+..||.+|.+|+.|| +++|+++|||||++|+..+++.+++.+|.|.+. ...|+|+|
T Consensus 2 ~~~FG~~L~~~~~~---~~~~iP~~v~~~i~~L-~~~gl~~eGIFR~~g~~~~i~~l~~~~d~g~~~~~~~~~~~d~h~v 77 (203)
T cd04386 2 KPVFGTPLEEHLKR---TGREIALPIEACVMCL-LETGMNEEGLFRVGGGASKLKRLKAALDAGTFSLPLDEFYSDPHAV 77 (203)
T ss_pred CCcCCCCHHHHHHH---cCCCCCHHHHHHHHHH-HHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCcchhhccCCHHHH
Confidence 46999999987532 3567999999999998 578999999999999999999999999998742 35799999
Q ss_pred HHHHHHHHHhCCCCCCCCCChHHHhhcc-------cHHHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhhhH
Q 010138 246 AGLIKAWLRELPTGVLDSLTPDQVMHCN-------TEEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIA 318 (517)
Q Consensus 246 AsLLK~fLReLPePLlp~~ly~~~i~~~-------~~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLA 318 (517)
|++||.|||+||+||+|.++|+.|+.+. +.+.++.++.+||+.|+.+|+||+.||++|+++++.|||+++|||
T Consensus 78 a~~lK~fLreLp~pli~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~l~~~l~~v~~~~~~NkM~~~nLa 157 (203)
T cd04386 78 ASALKSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIWRILNKLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIA 157 (203)
T ss_pred HHHHHHHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChHHHH
Confidence 9999999999999999999999998863 235688899999999999999999999999999999999999999
Q ss_pred HhhhcccCCCCChhH----HHHHHHHHHHHHHHHHHHHHHhhHHH
Q 010138 319 MVFAPNMTQMADPLT----ALIHAVQVMNFLKTLILKILREREEA 359 (517)
Q Consensus 319 iVFaPnLlr~~d~~~----~l~~~~~~~~~v~~LIen~l~~fee~ 359 (517)
+||||+|+++++... ........+.+++.||+++-..|++.
T Consensus 158 i~faP~ll~~~~~~~~~~~~~~~~~~~~~iv~~LI~~~~~iF~~~ 202 (203)
T cd04386 158 IVLAPNLLWAKNEGSLAEMAAGTSVHVVAIVELIISHADWFFPGE 202 (203)
T ss_pred HHhccccCCCCCCChhhhhhhhhhHHHHHHHHHHHHhHHHhCCCC
Confidence 999999999876421 22334567899999999998888653
No 14
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins. The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.9e-37 Score=300.13 Aligned_cols=182 Identities=26% Similarity=0.335 Sum_probs=156.0
Q ss_pred cccccccccccccCCCCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCCCC-CCCchhhhHHHHHH
Q 010138 173 VFGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVVP-HGIDVHCLAGLIKA 251 (517)
Q Consensus 173 vFGv~L~~L~~~~~~~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~~~-~~~D~h~VAsLLK~ 251 (517)
|||+||+.+.......+..||.+|.+|++||. + |+++|||||++|+..++++|++.+|+|... ...++|+||++||.
T Consensus 1 vFGv~L~~l~~~~~~~~~~IP~il~~~~~~l~-~-~l~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~vaslLK~ 78 (202)
T cd04394 1 VFGVPLHSLPHSTVPEYGNVPKFLVDACTFLL-D-HLSTEGLFRKSGSVVRQKELKAKLEGGEACLSSALPCDVAGLLKQ 78 (202)
T ss_pred CCCccHHHHHHhhCCCCCCCChHHHHHHHHHH-H-CCCCCCeeeCCCCHHHHHHHHHHHcCCCCCccccCHHHHHHHHHH
Confidence 79999999865433346789999999999984 3 699999999999999999999999998653 46789999999999
Q ss_pred HHHhCCCCCCCCCChHHHhhccc-------HHHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhhhHHhhhcc
Q 010138 252 WLRELPTGVLDSLTPDQVMHCNT-------EEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAPN 324 (517)
Q Consensus 252 fLReLPePLlp~~ly~~~i~~~~-------~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLAiVFaPn 324 (517)
|||+||+||||+++|+.|+.+.+ .+.++.++.+||+.|+.+|+||+.||++|+++++.|||++.|||+||||+
T Consensus 79 flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivfaP~ 158 (202)
T cd04394 79 FFRELPEPLLPYDLHEALLKAQELPTDEERKSATLLLTCLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFAPN 158 (202)
T ss_pred HHhcCCCcCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHhhcce
Confidence 99999999999999999988632 23466788999999999999999999999999999999999999999999
Q ss_pred cCCCCChhH-----HHHHHHHHHHHHHHHHHHHHHhh
Q 010138 325 MTQMADPLT-----ALIHAVQVMNFLKTLILKILRER 356 (517)
Q Consensus 325 Llr~~d~~~-----~l~~~~~~~~~v~~LIen~l~~f 356 (517)
|+++.+... ..........++++||+++-++|
T Consensus 159 L~~~~~~~~~~s~~~~~~~~~~~~vv~~lI~~~~~i~ 195 (202)
T cd04394 159 LFQSEEGGEKMSSSTEKRLRLQAAVVQTLIDNASNIG 195 (202)
T ss_pred eecCCCcccccchhHHHhHHHHHHHHHHHHHHHHHHc
Confidence 999875321 12234456788999999987776
No 15
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins. Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.3e-37 Score=306.03 Aligned_cols=179 Identities=21% Similarity=0.235 Sum_probs=151.4
Q ss_pred cccccccccccccCC------------CCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCC-----
Q 010138 173 VFGVSAKSMQCSYDD------------RGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGV----- 235 (517)
Q Consensus 173 vFGv~L~~L~~~~~~------------~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~----- 235 (517)
||||+|++.+..... ....||.+|.+|++|| +++|+++|||||++|+..+++.|++.||.+.
T Consensus 1 ~fg~~l~~~~~~~~~~~~~~~~~~~~~~~~~IP~iv~~ci~~l-~~~gl~~EGIFRvsG~~~~i~~L~~~~d~~~~~~~~ 79 (225)
T cd04396 1 VFGVSLEESLKYASVAISIVDEDGEQYVYGYIPVVVAKCGVYL-KENATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKS 79 (225)
T ss_pred CCCCcHHHHHHhcchheeeecCCCccccCCCCChHHHHHHHHH-HHCCCCCCCceeCCCCHHHHHHHHHHHccCcccCCc
Confidence 799999986433221 1247999999999998 6899999999999999999999999999863
Q ss_pred -CCCCCchhhhHHHHHHHHHhCCCCCCCCCChHHHhhcc------------------------cHHHHHHHHHhcChhHH
Q 010138 236 -VPHGIDVHCLAGLIKAWLRELPTGVLDSLTPDQVMHCN------------------------TEEDCTQLVKLLPPSEA 290 (517)
Q Consensus 236 -~~~~~D~h~VAsLLK~fLReLPePLlp~~ly~~~i~~~------------------------~~e~l~~Ll~~LP~~Nr 290 (517)
....+|+|+||++||+|||+||+||||.++|++|+.+. +.+.++.++.+||+.|+
T Consensus 80 ~~~~~~~vh~va~lLK~fLReLPePLip~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~ 159 (225)
T cd04396 80 FDWDGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIKEYRDLITRLPNLNR 159 (225)
T ss_pred CCccCCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHhcchhhhhhccccccccccCHHHHHHHHHHHHHHCCHHHH
Confidence 23568999999999999999999999999999997531 12346789999999999
Q ss_pred HHHHHHHHHhhHhhhccccCCCChhhhHHhhhcccCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 010138 291 ALLDWAINLMADVVQHEQYNKMNARNIAMVFAPNMTQMADPLTALIHAVQVMNFLKTLILKI 352 (517)
Q Consensus 291 ~lL~~Li~fL~~V~~~s~~NKMt~~NLAiVFaPnLlr~~d~~~~l~~~~~~~~~v~~LIen~ 352 (517)
.+|+||+.||++|+++++.|||+++|||+||||+|++.++.............++++||+|+
T Consensus 160 ~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~~~~~~~~~~~~~~~~~~ve~lI~~~ 221 (225)
T cd04396 160 QLLLYLLDLLAVFARNSDKNLMTASNLAAIFQPGILSHPDHEMDPKEYKLSRLVVEFLIEHQ 221 (225)
T ss_pred HHHHHHHHHHHHHHHhhccccCChhhhheeeccccCCCCccccCHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999998875444444455567888888875
No 16
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.7e-37 Score=297.82 Aligned_cols=181 Identities=25% Similarity=0.342 Sum_probs=162.5
Q ss_pred cccccccccccccCCCCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCCC--CCCCchhhhHHHHH
Q 010138 173 VFGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVV--PHGIDVHCLAGLIK 250 (517)
Q Consensus 173 vFGv~L~~L~~~~~~~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~~--~~~~D~h~VAsLLK 250 (517)
+||+||+.+. + +..||.+|..|++|| +++|+++|||||++|+..+++++++.+|.|.. .+.+|+|+||++||
T Consensus 1 ~FG~~L~~~~-~----~~~vP~~i~~~i~~l-~~~g~~~eGiFR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~va~~lK 74 (192)
T cd04402 1 LFGQPLSNIC-E----DDNLPKPILDMLSLL-YQKGPSTEGIFRRSANAKACKELKEKLNSGVEVDLKAEPVLLLASVLK 74 (192)
T ss_pred CCCCcHHHHh-C----CCCCCHHHHHHHHHH-HHhCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCCccCCHHHHHHHHH
Confidence 6999999874 3 567999999999998 57899999999999999999999999999864 36789999999999
Q ss_pred HHHHhCCCCCCCCCChHHHhhcc-------cHHHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhhhHHhhhc
Q 010138 251 AWLRELPTGVLDSLTPDQVMHCN-------TEEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAP 323 (517)
Q Consensus 251 ~fLReLPePLlp~~ly~~~i~~~-------~~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLAiVFaP 323 (517)
+|||+||+||||.+.|+.|+.+. +.+.++.++.+||..|+.+|.||+.||++|+++++.|||+++|||+||||
T Consensus 75 ~flreLpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~V~~~~~~NkM~~~nLAi~faP 154 (192)
T cd04402 75 DFLRNIPGSLLSSDLYEEWMSALDQENEEEKIAELQRLLDKLPRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIAP 154 (192)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHhhhhccc
Confidence 99999999999999999998763 23568899999999999999999999999999999999999999999999
Q ss_pred ccCCCCChh-HHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 010138 324 NMTQMADPL-TALIHAVQVMNFLKTLILKILREREEA 359 (517)
Q Consensus 324 nLlr~~d~~-~~l~~~~~~~~~v~~LIen~l~~fee~ 359 (517)
+|+++++.. ..+.....+..+++.||+|+-++|.++
T Consensus 155 ~l~~~~~~~~~~~~~~~~~~~~~~~LI~~~~~IF~~~ 191 (192)
T cd04402 155 SLLWPPASSELQNEDLKKVTSLVQFLIENCQEIFGED 191 (192)
T ss_pred cccCCCCccHHHHHHHHhhhHHHHHHHHhHHHhCCCC
Confidence 999998753 334556778899999999999998764
No 17
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge
Probab=100.00 E-value=1.5e-37 Score=300.84 Aligned_cols=174 Identities=21% Similarity=0.335 Sum_probs=152.7
Q ss_pred ccccccccccccCCCCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCCC---CCCCchhhhHHHHH
Q 010138 174 FGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVV---PHGIDVHCLAGLIK 250 (517)
Q Consensus 174 FGv~L~~L~~~~~~~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~~---~~~~D~h~VAsLLK 250 (517)
||++|..+... .+..||.+|.+|+++| +++|+++|||||++|+..++++|++.++.|.. ...+|+|+||++||
T Consensus 1 FG~~L~~~~~~---~~~~vP~iv~~ci~~i-~~~gl~~eGIfR~sG~~~~i~~l~~~~~~~~~~~~~~~~~~h~va~~LK 76 (203)
T cd04378 1 FGVDFSQVPRD---FPDEVPFIIKKCTSEI-ENRALGVQGIYRVSGSKARVEKLCQAFENGKDLVELSELSPHDISSVLK 76 (203)
T ss_pred CCCChHHHHHH---CCCCCChHHHHHHHHH-HhcCCCCccceeCCCcHHHHHHHHHHHhcCCCccccccCCHHHHHHHHH
Confidence 99999998533 2457999999999998 68999999999999999999999999998753 35689999999999
Q ss_pred HHHHhCCCCCCCCCChHHHhhccc---------------------HHHHHHHHHhcChhHHHHHHHHHHHhhHhhhcccc
Q 010138 251 AWLRELPTGVLDSLTPDQVMHCNT---------------------EEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQY 309 (517)
Q Consensus 251 ~fLReLPePLlp~~ly~~~i~~~~---------------------~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~ 309 (517)
+|||+||+||||+++|+.|+.+.+ .+.++.++.+||+.|+.+|+||+.||++|+++++.
T Consensus 77 ~fLReLpePlip~~~y~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~ 156 (203)
T cd04378 77 LFLRQLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEVNRIIRKLKDLLRQLPASNYNTLQHLIAHLYRVAEQFEE 156 (203)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999987532 24578899999999999999999999999999999
Q ss_pred CCCChhhhHHhhhcccCCCCCh-----hHHHHHHHHHHHHHHHHHHH
Q 010138 310 NKMNARNIAMVFAPNMTQMADP-----LTALIHAVQVMNFLKTLILK 351 (517)
Q Consensus 310 NKMt~~NLAiVFaPnLlr~~d~-----~~~l~~~~~~~~~v~~LIen 351 (517)
|||++.|||+||||+|+|++.. +..+.+......+++.||.|
T Consensus 157 NkM~~~NLaivf~P~Ll~~~~~~~~~~~~~l~~~~~q~~~ve~li~~ 203 (203)
T cd04378 157 NKMSPNNLGIVFGPTLIRPRPGDADVSLSSLVDYGYQARLVEFLITN 203 (203)
T ss_pred hCCCHHHhhhhhccccCCCCCCCcchhHHHHHhhhhhHHHHHHHhhC
Confidence 9999999999999999998764 33455666777788888864
No 18
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=100.00 E-value=2e-37 Score=296.48 Aligned_cols=172 Identities=22% Similarity=0.410 Sum_probs=151.3
Q ss_pred ccccccccccccCCCCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCC---CCCCCchhhhHHHHH
Q 010138 174 FGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGV---VPHGIDVHCLAGLIK 250 (517)
Q Consensus 174 FGv~L~~L~~~~~~~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~---~~~~~D~h~VAsLLK 250 (517)
|||+|+.+. . .+..||.+|.+|++|| +++|+++|||||++|+..++++|++.+|.+. ..+.+|+|+||++||
T Consensus 1 FGv~L~~l~-~---~~~~iP~ii~~~i~~l-~~~gl~~EGIFR~sGs~~~i~~l~~~~d~~~~~~~~~~~d~h~va~lLK 75 (186)
T cd04406 1 FGVELSRLT-S---EDRSVPLVVEKLINYI-EMHGLYTEGIYRKSGSTNKIKELRQGLDTDANSVNLDDYNIHVIASVFK 75 (186)
T ss_pred CCCchHHHH-H---CCCCCCcHHHHHHHHH-HHhCCCCCceeeCCCcHHHHHHHHHHHccCCCCCCcccCCHHHHHHHHH
Confidence 999999874 2 2457999999999998 6899999999999999999999999999864 235789999999999
Q ss_pred HHHHhCCCCCCCCCChHHHhhccc-------HHHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhhhHHhhhc
Q 010138 251 AWLRELPTGVLDSLTPDQVMHCNT-------EEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAP 323 (517)
Q Consensus 251 ~fLReLPePLlp~~ly~~~i~~~~-------~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLAiVFaP 323 (517)
.|||+||+||||.++|+.|+.+.. ...++.++.+||+.|+.+|++|+.||++|+++++.|||++.|||+||||
T Consensus 76 ~fLReLPePLi~~~~y~~~~~~~~~~~~~~~i~~~~~li~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivf~P 155 (186)
T cd04406 76 QWLRDLPNPLMTFELYEEFLRAMGLQERRETVRGVYSVIDQLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFAP 155 (186)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhCCCccCCChHHHHHHhcc
Confidence 999999999999999999987632 2346788999999999999999999999999999999999999999999
Q ss_pred ccCCCCC---hhHHHHHHHHHHHHHHHHHH
Q 010138 324 NMTQMAD---PLTALIHAVQVMNFLKTLIL 350 (517)
Q Consensus 324 nLlr~~d---~~~~l~~~~~~~~~v~~LIe 350 (517)
+|++.++ +...+.+..+...+++.||.
T Consensus 156 ~ll~~p~~~d~~~~~~~~~~~~~~~~~~~~ 185 (186)
T cd04406 156 CILRCPDTTDPLQSVQDISKTTTCVELIVC 185 (186)
T ss_pred cccCCCCCCCHHHHHHHHhhccchhhhhcc
Confidence 9999764 45566777777777777763
No 19
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.
Probab=100.00 E-value=3.1e-37 Score=295.23 Aligned_cols=178 Identities=26% Similarity=0.480 Sum_probs=158.9
Q ss_pred ccccccccccccccCCCCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCCCC---CCCchhhhHHH
Q 010138 172 SVFGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVVP---HGIDVHCLAGL 248 (517)
Q Consensus 172 ~vFGv~L~~L~~~~~~~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~~~---~~~D~h~VAsL 248 (517)
++||++|+++. +....+..||.+|..|++|| +++|+++|||||++|+..+++.+++.++.|... ...|+|+||++
T Consensus 1 ~~FGv~L~~l~-~~~~~~~~vP~il~~~i~~l-~~~gl~~eGIFR~~g~~~~i~~l~~~~d~~~~~~~~~~~d~~~va~~ 78 (189)
T cd04393 1 KVFGVPLQELQ-QAGQPENGVPAVVRHIVEYL-EQHGLEQEGLFRVNGNAETVEWLRQRLDSGEEVDLSKEADVCSAASL 78 (189)
T ss_pred CcccccHHHHH-hccCCCCCCChHHHHHHHHH-HHcCCCCCCeeeCCCCHHHHHHHHHHHcCCCCCCccccCCHHHHHHH
Confidence 48999999985 33444668999999999998 569999999999999999999999999998653 34899999999
Q ss_pred HHHHHHhCCCCCCCCCChHHHhhccc--------HHHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhhhHHh
Q 010138 249 IKAWLRELPTGVLDSLTPDQVMHCNT--------EEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMV 320 (517)
Q Consensus 249 LK~fLReLPePLlp~~ly~~~i~~~~--------~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLAiV 320 (517)
||+|||+||+||||.+.|+.|+++.+ ...++.++.+||+.|+.+|.||+.||++|+++++.|||++.|||+|
T Consensus 79 lK~flr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~l~~li~~Lp~~n~~~L~~l~~~l~~V~~~s~~NkMt~~nLA~v 158 (189)
T cd04393 79 LRLFLQELPEGLIPASLQIRLMQLYQDYNGEDEFGRKLRDLLQQLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAV 158 (189)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHHHccChHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHhhhh
Confidence 99999999999999999999987632 2468899999999999999999999999999999999999999999
Q ss_pred hhcccCCCCChhHHHHHHHHHHHHHHHHHHH
Q 010138 321 FAPNMTQMADPLTALIHAVQVMNFLKTLILK 351 (517)
Q Consensus 321 FaPnLlr~~d~~~~l~~~~~~~~~v~~LIen 351 (517)
|||+||+.+.....+....-...+|+.||+|
T Consensus 159 f~P~l~~~~~~~~~~~~~~~~~~~~~~li~~ 189 (189)
T cd04393 159 FGPDVFHVYTDVEDMKEQEICSRIMAKLLEN 189 (189)
T ss_pred ccCceeCCCCCcccHHHHHHHHHHHHHHhcC
Confidence 9999999988777777777778888888875
No 20
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int
Probab=100.00 E-value=3.4e-37 Score=293.63 Aligned_cols=171 Identities=25% Similarity=0.388 Sum_probs=151.5
Q ss_pred ccccccccccccC-CCCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCCCC--CCCchhhhHHHHH
Q 010138 174 FGVSAKSMQCSYD-DRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVVP--HGIDVHCLAGLIK 250 (517)
Q Consensus 174 FGv~L~~L~~~~~-~~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~~~--~~~D~h~VAsLLK 250 (517)
||+||++++.... ..|..||.+|.+|++|| +++|+++|||||++|+..++++|++.+++|... +.+|+|+||++||
T Consensus 1 FGv~L~~~~~~~~~~~g~~iP~~v~~~i~~l-~~~gl~~EGIfR~~G~~~~i~~l~~~~~~~~~~~~~~~d~h~va~lLK 79 (182)
T cd04381 1 FGASLSLAVERSRCHDGIDLPLVFRECIDYV-EKHGMKCEGIYKVSGIKSKVDELKAAYNRRESPNLEEYEPPTVASLLK 79 (182)
T ss_pred CCCCHHHHHHhhccCCCCcCChHHHHHHHHH-HHhCCCCCceeecCCcHHHHHHHHHHHcCCCCCCccccChHHHHHHHH
Confidence 9999999854321 24678999999999998 689999999999999999999999999998653 5789999999999
Q ss_pred HHHHhCCCCCCCCCChHHHhhcc-------cHHHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhhhHHhhhc
Q 010138 251 AWLRELPTGVLDSLTPDQVMHCN-------TEEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAP 323 (517)
Q Consensus 251 ~fLReLPePLlp~~ly~~~i~~~-------~~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLAiVFaP 323 (517)
.|||+||+||||.++|+.|+++. +.++++.++.+||+.|+.+|+||+.||.+|+++++.|||+++|||+||||
T Consensus 80 ~fLReLP~pLi~~~~~~~~~~~~~~~~~~~r~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP 159 (182)
T cd04381 80 QYLRELPEPLLTKELMPRFEEACGRPTEAEREQELQRLLKELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLSP 159 (182)
T ss_pred HHHHhCCCccCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhCc
Confidence 99999999999999999998753 23568899999999999999999999999999999999999999999999
Q ss_pred ccCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 010138 324 NMTQMADPLTALIHAVQVMNFLKTLILKILREREE 358 (517)
Q Consensus 324 nLlr~~d~~~~l~~~~~~~~~v~~LIen~l~~fee 358 (517)
+|+.+ .+++..||.|+-+.|.+
T Consensus 160 ~l~~~-------------~~~~~~li~~~~~if~~ 181 (182)
T cd04381 160 TVQIS-------------NRLLYALLTHCQELFGN 181 (182)
T ss_pred cccCc-------------HHHHHHHHHHHHHHcCC
Confidence 99743 36788888888887753
No 21
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.3e-37 Score=299.53 Aligned_cols=173 Identities=20% Similarity=0.355 Sum_probs=150.5
Q ss_pred ccccccccccccCCCCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCCC---CCCCchhhhHHHHH
Q 010138 174 FGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVV---PHGIDVHCLAGLIK 250 (517)
Q Consensus 174 FGv~L~~L~~~~~~~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~~---~~~~D~h~VAsLLK 250 (517)
||+||+.+... . +..||.+|.+|+++| +++|+++|||||++|+..++++|++.|+.|.. ...+|+|+||++||
T Consensus 1 FG~~L~~~~~~-~--~~~iP~il~~ci~~i-e~~gl~~EGIfRvsG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~~LK 76 (211)
T cd04409 1 FGADFAQVAKK-S--PDGIPFIIKKCTSEI-ESRALCLKGIYRVNGAKSRVEKLCQAFENGKDLVELSELSPHDISNVLK 76 (211)
T ss_pred CCCChHHHHHh-C--CCCCCcHHHHHHHHH-HHcCCCCCCeeECCCcHHHHHHHHHHHHcCCCccccccCCHHHHHHHHH
Confidence 99999997533 3 457999999999998 78999999999999999999999999999863 35789999999999
Q ss_pred HHHHhCCCCCCCCCChHHHhhccc-----------------------------HHHHHHHHHhcChhHHHHHHHHHHHhh
Q 010138 251 AWLRELPTGVLDSLTPDQVMHCNT-----------------------------EEDCTQLVKLLPPSEAALLDWAINLMA 301 (517)
Q Consensus 251 ~fLReLPePLlp~~ly~~~i~~~~-----------------------------~e~l~~Ll~~LP~~Nr~lL~~Li~fL~ 301 (517)
+|||+||+||||..+|+.|+++.+ ..+++.++.+||+.|+.+|+||+.||+
T Consensus 77 ~fLReLPePLi~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~ 156 (211)
T cd04409 77 LYLRQLPEPLILFRLYNEFIGLAKESQHVNETQEAKKNSDKKWPNMCTELNRILLKSKDLLRQLPAPNYNTLQFLIVHLH 156 (211)
T ss_pred HHHHhCCCcccCHHHHHHHHHHHHhhcccccccccccccccccccchhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 999999999999999999987531 135788999999999999999999999
Q ss_pred HhhhccccCCCChhhhHHhhhcccCCCCCh-----hHHHHHHHHHHHHHHHHHH
Q 010138 302 DVVQHEQYNKMNARNIAMVFAPNMTQMADP-----LTALIHAVQVMNFLKTLIL 350 (517)
Q Consensus 302 ~V~~~s~~NKMt~~NLAiVFaPnLlr~~d~-----~~~l~~~~~~~~~v~~LIe 350 (517)
+|+++++.|||++.|||+||||+|+++... ...+.+......+++.||.
T Consensus 157 ~V~~~s~~NkM~~~NLAivf~P~Llrp~~~~~~~~~~~~~~~~~~~~~ve~li~ 210 (211)
T cd04409 157 RVSEQAEENKMSASNLGIIFGPTLIRPRPTDATVSLSSLVDYPHQARLVELLIT 210 (211)
T ss_pred HHHcccccCCCChHHhhhhccccccCCCCCCcchhHHHHhhhhhHHHHHHHHhh
Confidence 999999999999999999999999998643 2334456667788888874
No 22
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.1e-36 Score=296.18 Aligned_cols=176 Identities=21% Similarity=0.379 Sum_probs=150.6
Q ss_pred ccccccccccccCCCCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCCC---C---CCCchhhhHH
Q 010138 174 FGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVV---P---HGIDVHCLAG 247 (517)
Q Consensus 174 FGv~L~~L~~~~~~~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~~---~---~~~D~h~VAs 247 (517)
||+||+.++.. +..+..||.+|.+|++|| +.+|+++|||||++|+..+++.|++.++++.. . ...|+|+||+
T Consensus 1 FGvpL~~l~~r-e~~~~~IP~iv~~ci~~L-~~~gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~l~~~~~~dvh~vA~ 78 (207)
T cd04379 1 FGVPLSRLVER-EGESRDVPIVLQKCVQEI-ERRGLDVIGLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITG 78 (207)
T ss_pred CCCChHHHHhh-cCCCCCcChHHHHHHHHH-HHcCCCcCCceeeCCcHHHHHHHHHHHcCCCCcCCCChhhcccHHHHHH
Confidence 99999998643 334678999999999998 67999999999999999999999999998642 1 2348999999
Q ss_pred HHHHHHHhCCCCCCCCCChHHHhhccc----------HHHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhhh
Q 010138 248 LIKAWLRELPTGVLDSLTPDQVMHCNT----------EEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNI 317 (517)
Q Consensus 248 LLK~fLReLPePLlp~~ly~~~i~~~~----------~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NL 317 (517)
+||+|||+||+||||+.+|+.|+++.+ .+.++.++.+||+.|+.+|+||+.||++|+++++.|||++.||
T Consensus 79 lLK~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~~~~~~~li~~LP~~n~~~L~~Ll~~L~~V~~~s~~NkMt~~NL 158 (207)
T cd04379 79 VLKDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTLSIIDCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNL 158 (207)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHh
Confidence 999999999999999999999987632 2347788999999999999999999999999999999999999
Q ss_pred HHhhhcccCCCCChhH-------------HHHHHHHHHHHHHHHHHH
Q 010138 318 AMVFAPNMTQMADPLT-------------ALIHAVQVMNFLKTLILK 351 (517)
Q Consensus 318 AiVFaPnLlr~~d~~~-------------~l~~~~~~~~~v~~LIen 351 (517)
|+||||+|+++++... .....++.+.+++.||+-
T Consensus 159 Aivf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (207)
T cd04379 159 AVCFGPVLMFCSQEFSRYGISPTSKMAAVSTVDFKQHIEVLHYLLQI 205 (207)
T ss_pred HHhhccccCCCCcccccccCCCCccccccchhhHHHHHHHHHHHHHh
Confidence 9999999999865321 234456777888888764
No 23
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch
Probab=100.00 E-value=1.1e-36 Score=293.79 Aligned_cols=153 Identities=22% Similarity=0.380 Sum_probs=138.8
Q ss_pred ccccccccccccCCCCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCCC-----CCCCchhhhHHH
Q 010138 174 FGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVV-----PHGIDVHCLAGL 248 (517)
Q Consensus 174 FGv~L~~L~~~~~~~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~~-----~~~~D~h~VAsL 248 (517)
|||+|..+.. +.+..||.+|.+|++|| +++|+++|||||++|+..++++|++.+|++.. .+..|+|+||++
T Consensus 1 FGv~L~~~~~---r~~~~IP~iv~~ci~~l-~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~d~h~va~l 76 (196)
T cd04387 1 FGVKISTVTK---RERSKVPYIVRQCVEEV-ERRGMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGT 76 (196)
T ss_pred CCCCHHHHHH---hcCCCCChHHHHHHHHH-HHhCCCCCceEEeCCcHHHHHHHHHHHhCCCcccccccccCCHHHHHHH
Confidence 9999998753 24567999999999998 68899999999999999999999999998742 256899999999
Q ss_pred HHHHHHhCCCCCCCCCChHHHhhcc-------cHHHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhhhHHhh
Q 010138 249 IKAWLRELPTGVLDSLTPDQVMHCN-------TEEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVF 321 (517)
Q Consensus 249 LK~fLReLPePLlp~~ly~~~i~~~-------~~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLAiVF 321 (517)
||.|||+||+||||+++|+.|+++. +.+.++.++.+||+.|+.+|.||+.||++|+++++.|||++.|||+||
T Consensus 77 LK~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf 156 (196)
T cd04387 77 LKLYFRELPEPLFTDELYPNFAEGIALSDPVAKESCMLNLLLSLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNLATVF 156 (196)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHH
Confidence 9999999999999999999998762 234578899999999999999999999999999999999999999999
Q ss_pred hcccCCCCC
Q 010138 322 APNMTQMAD 330 (517)
Q Consensus 322 aPnLlr~~d 330 (517)
||+|++++.
T Consensus 157 ~P~Llr~~~ 165 (196)
T cd04387 157 GPTLLRPSE 165 (196)
T ss_pred ccccCCCCc
Confidence 999999875
No 24
>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins. Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.8e-36 Score=295.29 Aligned_cols=183 Identities=19% Similarity=0.212 Sum_probs=154.1
Q ss_pred ccccccccccccCC--------CCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCCC----CCCCc
Q 010138 174 FGVSAKSMQCSYDD--------RGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVV----PHGID 241 (517)
Q Consensus 174 FGv~L~~L~~~~~~--------~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~~----~~~~D 241 (517)
|||||+.+...... ....||.+|.+|+.|| +++|+++|||||++|+..++++|++.++.|.. ....+
T Consensus 1 FGv~L~~l~~~~~~~~~~~~~~~~~~IP~~l~~~i~~l-~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~d~~~~~ 79 (213)
T cd04397 1 FGVPLEILVEKFGADSTLGVGPGKLRIPALIDDIISAM-RQMDMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPDLSKEN 79 (213)
T ss_pred CCCCHHHHHHHhCcccccccCCCCCCCCHHHHHHHHHH-HHcCCCcCCeeeecchHHHHHHHHHHHhcCCCcccccccCc
Confidence 99999998544221 1236999999999998 67899999999999999999999999998742 34689
Q ss_pred hhhhHHHHHHHHHhCCCCCCCCCChHHHhhccc-------HHHHHHHHHhcChhHHHHHHHHHHHhhHhhhccc-----c
Q 010138 242 VHCLAGLIKAWLRELPTGVLDSLTPDQVMHCNT-------EEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQ-----Y 309 (517)
Q Consensus 242 ~h~VAsLLK~fLReLPePLlp~~ly~~~i~~~~-------~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~-----~ 309 (517)
+|+||++||+|||+||+||||.++|+.|+++.+ ...++.++.+||+.|+.+|+||+.||++|+.++. .
T Consensus 80 ~~~va~lLK~flReLPepLi~~~~y~~~i~~~~~~~~~~~~~~l~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~i~~~~~ 159 (213)
T cd04397 80 PVQLAALLKKFLRELPDPLLTFKLYRLWISSQKIEDEEERKRVLHLVYCLLPKYHRDTMEVLFSFLKWVSSFSHIDEETG 159 (213)
T ss_pred HHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhhcccCC
Confidence 999999999999999999999999999988743 2346678899999999999999999999998764 5
Q ss_pred CCCChhhhHHhhhcccCCCCChh-HHHHHHHHHHHHHHHHHHHHHHhhH
Q 010138 310 NKMNARNIAMVFAPNMTQMADPL-TALIHAVQVMNFLKTLILKILRERE 357 (517)
Q Consensus 310 NKMt~~NLAiVFaPnLlr~~d~~-~~l~~~~~~~~~v~~LIen~l~~fe 357 (517)
|||++.|||+||||||+++.... .........+.+++.||+|+-+.|.
T Consensus 160 NkM~~~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~vv~~LI~n~~~if~ 208 (213)
T cd04397 160 SKMDIHNLATVITPNILYSKTDNPNTGDEYFLAIEAVNYLIENNEEFCE 208 (213)
T ss_pred CcCChHHhHHhhcccccCCCCCCcchHHHHHHHHHHHHHHHHhHHHHhc
Confidence 99999999999999999987643 3334445667889999999877763
No 25
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2e-36 Score=289.08 Aligned_cols=171 Identities=20% Similarity=0.403 Sum_probs=146.4
Q ss_pred ccccccccccccCCCCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCCCC----CCCchhhhHHHH
Q 010138 174 FGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVVP----HGIDVHCLAGLI 249 (517)
Q Consensus 174 FGv~L~~L~~~~~~~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~~~----~~~D~h~VAsLL 249 (517)
||+||++++. .+..||.+|.+|+.|| +++|+++|||||++|+..+++++++.+++|... .++|+|+||++|
T Consensus 1 FG~pL~~~~~----~~~~IP~~l~~~i~~l-~~~gl~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~l 75 (185)
T cd04373 1 FGVPLANVVT----SEKPIPIFLEKCVEFI-EATGLETEGIYRVSGNKTHLDSLQKQFDQDHNLDLVSKDFTVNAVAGAL 75 (185)
T ss_pred CCCchHHHHh----CCCCCCcHHHHHHHHH-HHcCCCCCCeeecCCcHHHHHHHHHHHhcCCCCCcccccCcHHHHHHHH
Confidence 9999999753 3678999999999998 579999999999999999999999999987532 357999999999
Q ss_pred HHHHHhCCCCCCCCCChHHHhhcc-------cHHHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhhhHHhhh
Q 010138 250 KAWLRELPTGVLDSLTPDQVMHCN-------TEEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFA 322 (517)
Q Consensus 250 K~fLReLPePLlp~~ly~~~i~~~-------~~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLAiVFa 322 (517)
|+|||+||+||||+++|+.|+++. +.++++.++++||+.|+.+|.||+.||++|+++++.|||+++|||+|||
T Consensus 76 K~fLreLPePlip~~~~~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~NLAi~f~ 155 (185)
T cd04373 76 KSFFSELPDPLIPYSMHLELVEAAKINDREQRLHALKELLKKFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFW 155 (185)
T ss_pred HHHHhcCCchhccHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHHHHHHc
Confidence 999999999999999999998763 2356888999999999999999999999999999999999999999999
Q ss_pred cccCCCCCh-hHHHHHHHHHHHHHHHHHHHHH
Q 010138 323 PNMTQMADP-LTALIHAVQVMNFLKTLILKIL 353 (517)
Q Consensus 323 PnLlr~~d~-~~~l~~~~~~~~~v~~LIen~l 353 (517)
|+|+++... +.++..+ .+++.+|++++
T Consensus 156 P~L~~~~~~~~~~~~~~----~~~q~~i~~~i 183 (185)
T cd04373 156 PTLMRPDFTSMEALSAT----RIYQTIIETFI 183 (185)
T ss_pred cccCCCCCCCHHHHHcc----HHHHHHHHHHh
Confidence 999997653 4444333 33445555443
No 26
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=3e-36 Score=287.84 Aligned_cols=172 Identities=28% Similarity=0.457 Sum_probs=154.5
Q ss_pred ccccccccccccCCCCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCC---CCCCCchhhhHHHHH
Q 010138 174 FGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGV---VPHGIDVHCLAGLIK 250 (517)
Q Consensus 174 FGv~L~~L~~~~~~~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~---~~~~~D~h~VAsLLK 250 (517)
||++|+.+. . .+..||.+|..|++|| +.+|+++|||||++|+..+++++++.+|+|. ..+.+|+|+||++||
T Consensus 1 FG~~L~~~~-~---~~~~vP~~l~~~~~~l-~~~g~~~eGiFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~~va~~LK 75 (186)
T cd04377 1 FGVSLSSLT-S---EDRSVPLVLEKLLEHI-EMHGLYTEGIYRKSGSANKIKELRQGLDTDPDSVNLEDYPIHVITSVLK 75 (186)
T ss_pred CCCCHHHHH-h---CCCCCChHHHHHHHHH-HHcCCCCCceeeCCCCHHHHHHHHHHHhCCCcccCcccCCHHHHHHHHH
Confidence 999999874 2 3568999999999998 5799999999999999999999999999974 236789999999999
Q ss_pred HHHHhCCCCCCCCCChHHHhhccc-------HHHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhhhHHhhhc
Q 010138 251 AWLRELPTGVLDSLTPDQVMHCNT-------EEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAP 323 (517)
Q Consensus 251 ~fLReLPePLlp~~ly~~~i~~~~-------~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLAiVFaP 323 (517)
+|||+||+||||++.|+.|+.+.. .+.++.++.+||+.|+.+|.||+.||++|+++++.|||++.|||+||||
T Consensus 76 ~flr~LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~P 155 (186)
T cd04377 76 QWLRELPEPLMTFELYENFLRAMELEEKQERVRALYSVLEQLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVFAP 155 (186)
T ss_pred HHHHcCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhh
Confidence 999999999999999999987522 3467889999999999999999999999999999999999999999999
Q ss_pred ccCCCCC---hhHHHHHHHHHHHHHHHHHH
Q 010138 324 NMTQMAD---PLTALIHAVQVMNFLKTLIL 350 (517)
Q Consensus 324 nLlr~~d---~~~~l~~~~~~~~~v~~LIe 350 (517)
+|+|+++ +..++.+..+...++++||+
T Consensus 156 ~ll~~~~~~~~~~~~~d~~~~~~~~e~li~ 185 (186)
T cd04377 156 CILRCPDTADPLQSLQDVSKTTTCVETLIK 185 (186)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 9999875 45678888888899999885
No 27
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.5e-36 Score=290.44 Aligned_cols=179 Identities=25% Similarity=0.404 Sum_probs=154.9
Q ss_pred cccccccccccccCCCCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCCCC------CCCchhhhH
Q 010138 173 VFGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVVP------HGIDVHCLA 246 (517)
Q Consensus 173 vFGv~L~~L~~~~~~~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~~~------~~~D~h~VA 246 (517)
+|||||+... ....+..||.+|..|+.+| +.+|+++|||||++|+..++++|++.+|+|... +..|+|+||
T Consensus 1 ~FGvpl~~~~--~~~~~~~vP~iv~~~~~~l-~~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~d~~~va 77 (196)
T cd04395 1 TFGVPLDDCP--PSSENPYVPLIVEVCCNIV-EARGLETVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVS 77 (196)
T ss_pred CCCccHHHHh--cccCCCCCChHHHHHHHHH-HHcCCCCccceeCCCcHHHHHHHHHHHhcCCCCcCccccccccHHHHH
Confidence 5999999754 2334568999999999987 789999999999999999999999999998642 347999999
Q ss_pred HHHHHHHHhCCCCCCCCCChHHHhhccc-------HHHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhhhHH
Q 010138 247 GLIKAWLRELPTGVLDSLTPDQVMHCNT-------EEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAM 319 (517)
Q Consensus 247 sLLK~fLReLPePLlp~~ly~~~i~~~~-------~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLAi 319 (517)
++||+|||+||+||||.+.|+.|+.+.+ .++++.++.+||+.|+.+|.||+.||++|+++++.|||++.|||+
T Consensus 78 ~llK~flr~Lp~pli~~~~~~~~i~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~~~~NkM~~~nLAi 157 (196)
T cd04395 78 SLLKSFFRKLPEPLFTNELYPDFIEANRIEDPVERLKELRRLIHSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAI 157 (196)
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccccccchHH
Confidence 9999999999999999999999987632 246888999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCh--hHHHHHHHHHHHHHHHHHHHHHH
Q 010138 320 VFAPNMTQMADP--LTALIHAVQVMNFLKTLILKILR 354 (517)
Q Consensus 320 VFaPnLlr~~d~--~~~l~~~~~~~~~v~~LIen~l~ 354 (517)
||||+|+|+++. .....+......+++.||+++-.
T Consensus 158 ~faP~l~r~~~~~~~~~~~~~~~~~~ii~~LI~~~d~ 194 (196)
T cd04395 158 VFGPTLVRTSDDNMETMVTHMPDQCKIVETLIQHYDW 194 (196)
T ss_pred hhccccCCCCCCCHHHHHHhHHHHHHHHHHHHHhCcc
Confidence 999999998764 22334556667889999988643
No 28
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.7e-36 Score=288.62 Aligned_cols=177 Identities=24% Similarity=0.416 Sum_probs=155.8
Q ss_pred ccccccccccccCCCCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCCC------C--CCCchhhh
Q 010138 174 FGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVV------P--HGIDVHCL 245 (517)
Q Consensus 174 FGv~L~~L~~~~~~~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~~------~--~~~D~h~V 245 (517)
||++|+++... .+..||.+|.+|+++| +++|+++|||||++|+..+++.+++.+|++.. + ...|+|+|
T Consensus 1 FG~~L~~~~~~---~~~~iP~~v~~~i~~l-~~~gl~~eGiFR~~g~~~~i~~l~~~~d~~~~~~~~~~~~~~~~d~~~v 76 (192)
T cd04398 1 FGVPLEDLILR---EGDNVPNIVYQCIQAI-ENFGLNLEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSV 76 (192)
T ss_pred CCCChHHHHHH---cCCCCCHHHHHHHHHH-HHhCCCCCCeeecCCcHHHHHHHHHHHccCCccccccccccccccHHHH
Confidence 99999998632 3567999999999998 57999999999999999999999999998752 1 24699999
Q ss_pred HHHHHHHHHhCCCCCCCCCChHHHhhccc-------HHHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhhhH
Q 010138 246 AGLIKAWLRELPTGVLDSLTPDQVMHCNT-------EEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIA 318 (517)
Q Consensus 246 AsLLK~fLReLPePLlp~~ly~~~i~~~~-------~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLA 318 (517)
|++||+|||+||+||+|.++|+.|+++.+ .+.++.++.+||+.|+.+|.||+.||++|+++++.|||++.|||
T Consensus 77 a~~LK~fLreLp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLa 156 (192)
T cd04398 77 ASLLKLFFRELPEPLLTKALSREFIEAAKIEDESRRRDALHGLINDLPDANYATLRALMFHLARIKEHESVNRMSVNNLA 156 (192)
T ss_pred HHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhhhCCCHhHHH
Confidence 99999999999999999999999997632 35678899999999999999999999999999999999999999
Q ss_pred HhhhcccCCCCChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 010138 319 MVFAPNMTQMADPLTALIHAVQVMNFLKTLILKILRER 356 (517)
Q Consensus 319 iVFaPnLlr~~d~~~~l~~~~~~~~~v~~LIen~l~~f 356 (517)
+||||+|++.++. .+.+....+.+++.||+|+-+.|
T Consensus 157 ivf~P~l~~~~~~--~~~~~~~~~~~~~~LI~~~~~iF 192 (192)
T cd04398 157 IIWGPTLMNAAPD--NAADMSFQSRVIETLLDNAYQIF 192 (192)
T ss_pred HHHhhhhCCCCcc--chhhHHHHHHHHHHHHHHHHHhC
Confidence 9999999998875 23345566899999999987765
No 29
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p
Probab=100.00 E-value=4.3e-36 Score=290.45 Aligned_cols=183 Identities=19% Similarity=0.304 Sum_probs=150.0
Q ss_pred ccccccCCCCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCC---CCCCCchhhhHHHHHHHHHhC
Q 010138 180 SMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGV---VPHGIDVHCLAGLIKAWLREL 256 (517)
Q Consensus 180 ~L~~~~~~~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~---~~~~~D~h~VAsLLK~fLReL 256 (517)
+|..++.. ...+|.+|.+|+++| +++||++|||||++|+.. +.+|++.++.+. ..+.+|+|+||++||.|||+|
T Consensus 4 ~~~~~~~~-~~~~P~iv~~ci~~I-E~~GL~~eGIYRvsgs~~-~~~lk~~~d~~~~~~d~~~~dv~~va~~LK~ylReL 80 (200)
T cd04388 4 DLTEQFSP-PDVAPPLLIKLVEAI-EKKGLESSTLYRTQSSSS-LTELRQILDCDAASVDLEQFDVAALADALKRYLLDL 80 (200)
T ss_pred cHHHHhCC-CCCCCHHHHHHHHHH-HHhCCCCCceeeCCCccH-HHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHHhC
Confidence 44444443 357999999999998 789999999999999765 778999999852 346789999999999999999
Q ss_pred CCCCCCCCChHHHhhccc--------HHHHHHHHH--hcChhHHHHHHHHHHHhhHhhhccccCCCChhhhHHhhhcccC
Q 010138 257 PTGVLDSLTPDQVMHCNT--------EEDCTQLVK--LLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAPNMT 326 (517)
Q Consensus 257 PePLlp~~ly~~~i~~~~--------~e~l~~Ll~--~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLAiVFaPnLl 326 (517)
|+||||+.+|+.|+++.+ .+.++.++. .||+.|+.+|+|||.||++|++++..|+|+++|||+||||+||
T Consensus 81 PePLip~~~y~~fi~~~~~~~~~~~~~~~l~~li~~~~LP~~n~~tL~~Li~HL~rV~~~s~~NkM~~~NLAiVFgPtL~ 160 (200)
T cd04388 81 PNPVIPAPVYSEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAEIFSPLLF 160 (200)
T ss_pred CCccCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHhHHHhhhhhc
Confidence 999999999999998632 234667776 7999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhccCCCCCC
Q 010138 327 QMADPLTALIHAVQVMNFLKTLILKILREREEAAAKARLLSPCSD 371 (517)
Q Consensus 327 r~~d~~~~l~~~~~~~~~v~~LIen~l~~fee~~~~a~~~p~~s~ 371 (517)
|++.. ..........+++.||.+.+.+... ++++|++++
T Consensus 161 r~~~~--~~~~~~~~~~vvE~Li~~~~~e~~~----~~~~~~~~~ 199 (200)
T cd04388 161 RFQPA--SSDSPEFHIRIIEVLITSEWNERQA----APALPPKPP 199 (200)
T ss_pred CCCcc--cccchhhHHHHHHHHHHHHHhhcCC----CCCCCCCCC
Confidence 98764 2234456678888888865554422 466766654
No 30
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.4e-35 Score=288.16 Aligned_cols=169 Identities=24% Similarity=0.410 Sum_probs=151.0
Q ss_pred CCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCCC---CCCCchhhhHHHHHHHHHhCCCCCCCCC
Q 010138 188 RGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVV---PHGIDVHCLAGLIKAWLRELPTGVLDSL 264 (517)
Q Consensus 188 ~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~~---~~~~D~h~VAsLLK~fLReLPePLlp~~ 264 (517)
.+..||.+|.+|++|| +++|+++|||||++|+..++++|++.+|.|.. ....|+|+||++||.|||+||+||||++
T Consensus 5 ~~~~iP~iv~~ci~~l-~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLReLPePLi~~~ 83 (206)
T cd04376 5 IARQVPRLVESCCQHL-EKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLDENHSVHDVAALLKEFFRDMPDPLLPRE 83 (206)
T ss_pred CCCCCCHHHHHHHHHH-HHcCCCCCceeeCCCCHHHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHhCCCccCCHH
Confidence 3568999999999998 68999999999999999999999999999864 3568999999999999999999999999
Q ss_pred ChHHHhhccc------HHHHHHHHHhcChhHHHHHHHHHHHhhHhhhccc-----------cCCCChhhhHHhhhcccCC
Q 010138 265 TPDQVMHCNT------EEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQ-----------YNKMNARNIAMVFAPNMTQ 327 (517)
Q Consensus 265 ly~~~i~~~~------~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~-----------~NKMt~~NLAiVFaPnLlr 327 (517)
+|+.|+.+.+ .+.++.++.+||+.|+.+|.||+.||++|+++++ .|||++.|||+||||+|+|
T Consensus 84 ~y~~~i~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~~~~~~~~~~~~NkM~~~NLAivf~P~Ll~ 163 (206)
T cd04376 84 LYTAFIGTALLEPDEQLEALQLLIYLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNLATIFGPNLLH 163 (206)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCHHHHHHHhhccccC
Confidence 9999998743 3567889999999999999999999999999986 7999999999999999999
Q ss_pred CCCh--------hHHHHHHHHHHHHHHHHHHHHHHhhH
Q 010138 328 MADP--------LTALIHAVQVMNFLKTLILKILRERE 357 (517)
Q Consensus 328 ~~d~--------~~~l~~~~~~~~~v~~LIen~l~~fe 357 (517)
+++. ...+.+....+.+++.||+++-..|.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~ 201 (206)
T cd04376 164 KQKSGEREFVQASLRIEESTAIINVVQTMIDNYEELFM 201 (206)
T ss_pred CCCCcccccchhhhhHHHHHHHHHHHHHHHHhHHHHcC
Confidence 8753 23455667788999999999988874
No 31
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=8.5e-36 Score=285.48 Aligned_cols=172 Identities=25% Similarity=0.379 Sum_probs=147.6
Q ss_pred cccccccccccccCC--CCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCCCC------CCCchhh
Q 010138 173 VFGVSAKSMQCSYDD--RGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVVP------HGIDVHC 244 (517)
Q Consensus 173 vFGv~L~~L~~~~~~--~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~~~------~~~D~h~ 244 (517)
||||||++++..... .+..||.+|.+|++||.+.+++++|||||++|+...+++|+++++.+... ...|+|+
T Consensus 1 vFGv~L~~~~~~~~~~~~~~~iP~iv~~~i~~l~~~g~~~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~d~h~ 80 (190)
T cd04400 1 IFGSPLEEAVELSSHKYNGRDLPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKERFNTEYDVDLFSSSLYPDVHT 80 (190)
T ss_pred CCCCcHHHHHHHhccccCCCCCChHHHHHHHHHHHcCCcCCCCeeeCCCcHHHHHHHHHHHcCCCCCCccccccccCHHH
Confidence 799999987532211 35689999999999995545689999999999999999999999987431 3579999
Q ss_pred hHHHHHHHHHhCCCCCCCCCChHHHhhccc--------HHHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhh
Q 010138 245 LAGLIKAWLRELPTGVLDSLTPDQVMHCNT--------EEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARN 316 (517)
Q Consensus 245 VAsLLK~fLReLPePLlp~~ly~~~i~~~~--------~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~N 316 (517)
||++||.|||+||+||||.++|+.|..+.. ...++.++.+||+.|+.+|++|+.||++|+.+++.||||++|
T Consensus 81 va~lLK~flreLP~PLi~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~N 160 (190)
T cd04400 81 VAGLLKLYLRELPTLILGGELHNDFKRLVEENHDRSQRALELKDLVSQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLRN 160 (190)
T ss_pred HHHHHHHHHHhCCcccCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChHH
Confidence 999999999999999999999999976522 346788999999999999999999999999999999999999
Q ss_pred hHHhhhcccCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 010138 317 IAMVFAPNMTQMADPLTALIHAVQVMNFLKTLILKILRERE 357 (517)
Q Consensus 317 LAiVFaPnLlr~~d~~~~l~~~~~~~~~v~~LIen~l~~fe 357 (517)
||+||||+|+++.+ ++..+|++|-..|+
T Consensus 161 La~vf~P~L~~~~~-------------~~~~~~~~~~~~f~ 188 (190)
T cd04400 161 VCIVFSPTLNIPAG-------------IFVLFLTDFDCIFG 188 (190)
T ss_pred hhhhcCCCCCCCHH-------------HHHHHHHHHHHHcC
Confidence 99999999987633 66777888877764
No 32
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=100.00 E-value=5e-35 Score=281.62 Aligned_cols=164 Identities=21% Similarity=0.379 Sum_probs=146.1
Q ss_pred CCCCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCCC---CCCCchhhhHHHHHHHHHhCCCCCCC
Q 010138 186 DDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVV---PHGIDVHCLAGLIKAWLRELPTGVLD 262 (517)
Q Consensus 186 ~~~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~~---~~~~D~h~VAsLLK~fLReLPePLlp 262 (517)
...+..||.+|.+|++|| +++|+++|||||++|+..++++++++|+.|.. ....|+|+||++||+|||+||+||||
T Consensus 11 ~~~~~~IP~~l~~ci~~i-e~~gl~~EGIFRv~G~~~~i~~l~~~~~~~~~~~~~~~~d~h~vaslLK~fLReLPePLi~ 89 (193)
T cd04382 11 PSTSPMIPALIVHCVNEI-EARGLTEEGLYRVSGSEREVKALKEKFLRGKTVPNLSKVDIHVICGCLKDFLRSLKEPLIT 89 (193)
T ss_pred CCCCCCccHHHHHHHHHH-HHcCCCCCCeeecCCcHHHHHHHHHHHHcCCCCcccccCCHHHHHHHHHHHHHhCCCcCCC
Confidence 344678999999999998 78999999999999999999999999998753 34679999999999999999999999
Q ss_pred CCChHHHhhccc-------HHHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhhhHHhhhcccCCCCC----h
Q 010138 263 SLTPDQVMHCNT-------EEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAPNMTQMAD----P 331 (517)
Q Consensus 263 ~~ly~~~i~~~~-------~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLAiVFaPnLlr~~d----~ 331 (517)
.++|+.|+++.+ .+.++.++..||+.|+.+|+||+.||++|++ ++.|||++.|||+||||+|++.+. .
T Consensus 90 ~~~y~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~-s~~NkM~~~NLAivf~P~L~~~~~~~~~~ 168 (193)
T cd04382 90 FALWKEFMEAAEILDEDNSRAALYQAISELPQPNRDTLAFLILHLQRVAQ-SPECKMDINNLARVFGPTIVGYSVPNPDP 168 (193)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhc-cccCCCChHHhhhhhhchhcCCCCCCccH
Confidence 999999988632 2468889999999999999999999999999 999999999999999999998754 3
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 010138 332 LTALIHAVQVMNFLKTLILK 351 (517)
Q Consensus 332 ~~~l~~~~~~~~~v~~LIen 351 (517)
...+.+....+++|+.||+.
T Consensus 169 ~~~~~~~~~~~~vve~Li~~ 188 (193)
T cd04382 169 MTILQDTVRQPRVVERLLEI 188 (193)
T ss_pred HHHHHHhHHHHHHHHHHHhC
Confidence 66777777888999998865
No 33
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=7.4e-35 Score=278.01 Aligned_cols=171 Identities=26% Similarity=0.396 Sum_probs=149.7
Q ss_pred cccccccccccCCCCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCCC-----CCCCchhhhHHHH
Q 010138 175 GVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVV-----PHGIDVHCLAGLI 249 (517)
Q Consensus 175 Gv~L~~L~~~~~~~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~~-----~~~~D~h~VAsLL 249 (517)
|..|+..+ ..+..||.+|.+|+.|| +++|+++|||||++|+..++++|++.++.+.. +...|+|+||++|
T Consensus 2 ~~~l~~~~----~~~~~iP~~v~~~i~~l-~~~g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~ll 76 (184)
T cd04385 2 GPALEDQQ----LTDNDIPVIVDKCIDFI-TQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVL 76 (184)
T ss_pred CccHHHhh----hCCCCCChHHHHHHHHH-HHhCCCCCceeeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHH
Confidence 56666542 23578999999999998 67999999999999999999999999987532 3578999999999
Q ss_pred HHHHHhCCCCCCCCCChHHHhhccc-------HHHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhhhHHhhh
Q 010138 250 KAWLRELPTGVLDSLTPDQVMHCNT-------EEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFA 322 (517)
Q Consensus 250 K~fLReLPePLlp~~ly~~~i~~~~-------~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLAiVFa 322 (517)
|.|||+||+||||.++|+.|+.+.+ ...++.++.+||+.|+.+|.+|+.||++|+++++.|||+++|||+|||
T Consensus 77 K~yLreLP~pLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~l~~V~~~~~~NkM~~~nLaiv~~ 156 (184)
T cd04385 77 KRFLRDLPDPLLTSELHAEWIEAAELENKDERIARYKELIRRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLALVFG 156 (184)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhhhhhc
Confidence 9999999999999999999987632 246888999999999999999999999999999999999999999999
Q ss_pred cccCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 010138 323 PNMTQMADPLTALIHAVQVMNFLKTLILKI 352 (517)
Q Consensus 323 PnLlr~~d~~~~l~~~~~~~~~v~~LIen~ 352 (517)
|+|+++++. ........+++++.||.+|
T Consensus 157 P~ll~~~~~--~~~~~~~~~~v~~~Li~~~ 184 (184)
T cd04385 157 PTLFQTDEH--SVGQTSHEVKVIEDLIDNY 184 (184)
T ss_pred cccCCCCcc--chhHHHHHHHHHHHHHhcC
Confidence 999998875 4445667788999999874
No 34
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins. The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.5e-34 Score=281.23 Aligned_cols=172 Identities=24% Similarity=0.374 Sum_probs=146.2
Q ss_pred ccccccccccccCCCCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCCCC----CCCchhhhHHHH
Q 010138 174 FGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVVP----HGIDVHCLAGLI 249 (517)
Q Consensus 174 FGv~L~~L~~~~~~~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~~~----~~~D~h~VAsLL 249 (517)
||-+|.+- .++ .|.+|++|| ++ |+++|||||++|+..+++.|++.+++|... ..+|+|+||++|
T Consensus 1 ~~~~~~~~---------~~~-~v~~~i~~l-~~-gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~~~~~~~~h~va~lL 68 (208)
T cd04392 1 FGAPLTEE---------GIA-QIYQLIEYL-EK-NLRVEGLFRKPGNSARQQELRDLLNSGTDLDLESGGFHAHDCATVL 68 (208)
T ss_pred CCCCcccc---------ccH-HHHHHHHHH-Hh-CCCCcceeeCCCcHHHHHHHHHHHHcCCCCCcccccCCHHHHHHHH
Confidence 77777642 134 778899998 44 999999999999999999999999998643 357999999999
Q ss_pred HHHHHhCCCCCCCCCChHHHhhccc-------------------HHHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccC
Q 010138 250 KAWLRELPTGVLDSLTPDQVMHCNT-------------------EEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYN 310 (517)
Q Consensus 250 K~fLReLPePLlp~~ly~~~i~~~~-------------------~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~N 310 (517)
|.|||+||+||||.++|+.|+.+.+ .+.++.++.+||+.|+.+|+||+.||++|+++++.|
T Consensus 69 K~flReLPePLi~~~~y~~~~~i~~l~~~~~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~N 148 (208)
T cd04392 69 KGFLGELPEPLLTHAHYPAHLQIADLCQFDEKGNKTSAPDKERLLEALQLLLLLLPEENRNLLKLILDLLYQTAKHEDKN 148 (208)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHHhhcccccccccCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccC
Confidence 9999999999999999999865421 235677899999999999999999999999999999
Q ss_pred CCChhhhHHhhhcccCCCCCh--hHHHHHHHHHHHHHHHHHHHHHHhhH
Q 010138 311 KMNARNIAMVFAPNMTQMADP--LTALIHAVQVMNFLKTLILKILRERE 357 (517)
Q Consensus 311 KMt~~NLAiVFaPnLlr~~d~--~~~l~~~~~~~~~v~~LIen~l~~fe 357 (517)
||++.|||+||||+|+++.+. ............+++.||+|+-+.|.
T Consensus 149 kM~~~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~iF~ 197 (208)
T cd04392 149 KMSADNLALLFTPHLICPRNLTPEDLHENAQKLNSIVTFMIKHSQKLFK 197 (208)
T ss_pred CCCHHHHHHHhCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999997652 22334456678999999999988874
No 35
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=100.00 E-value=9.7e-35 Score=309.04 Aligned_cols=194 Identities=22% Similarity=0.384 Sum_probs=171.8
Q ss_pred CccccCCCCcccccccCceehhhhccccCCCCccCCCCCCCCCCCCCccccccccccccccCCCCCCccHHHHHHHHHHH
Q 010138 125 DEASMDISWPTEVRHVSHVTFDRFNGFLGLPTELEPEVPRKAPSASVSVFGVSAKSMQCSYDDRGNSVPTILLMMQRHLY 204 (517)
Q Consensus 125 dl~~~~igwpt~vr~ls~it~~rf~~~lGlP~~~~~~~pr~~p~~~~~vFGv~L~~L~~~~~~~g~~VP~IL~~~i~~Li 204 (517)
++...+|+ +++|++.+++++|++.+|+..+.++. .++..+.+.||||||..++ ++.|..||.+|.++++||
T Consensus 257 d~~~~qm~---~~~~~SLieLTA~~d~~~~~lK~kr~--kk~d~kd~~vFGVPL~vll---~rtG~~lP~~iQq~m~~l- 327 (674)
T KOG2200|consen 257 DQSAQQMK---KLHHLSLIELTALMDILGIQLKRKRA--KKVDGKDGGVFGVPLTVLL---QRTGQPLPLSIQQAMRYL- 327 (674)
T ss_pred CcCHHHHh---hhhhhHHHHHHHHHHHhCchhhhhcc--cCCccCCCceeecCceeee---ccCCCcCcHHHHHHHHHH-
Confidence 55555554 99999999999999999996544333 3344457899999999987 477999999999999998
Q ss_pred HcCCCccCCceeccCChhHHHHHHHHHhcCC-----CCCCCchhhhHHHHHHHHHhCCCCCCCCCChHHHhhc-------
Q 010138 205 SEGGLKAEGIFRINAENSQEEYVRDQLNKGV-----VPHGIDVHCLAGLIKAWLRELPTGVLDSLTPDQVMHC------- 272 (517)
Q Consensus 205 e~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~-----~~~~~D~h~VAsLLK~fLReLPePLlp~~ly~~~i~~------- 272 (517)
+++||+++||||++|.+++|+.|++.++... .++....|+||++||+|||+||+||+|.++.+.|+++
T Consensus 328 r~~~Le~vGifRksGvksRIk~Lrq~lE~~~~~~~~~~d~~~~~DvAdlLKqffRdLPePL~t~k~~~aF~~i~~~~pkk 407 (674)
T KOG2200|consen 328 RERGLETVGIFRKSGVKSRIKNLRQMLEAKFYNGEFNWDSQSAHDVADLLKQFFRDLPEPLFTVKYSEAFAQIYQLVPKK 407 (674)
T ss_pred HHhCccccceeecccHHHHHHHHHHHHhhcccCcccccchhhhhHHHHHHHHHHHhCCcccchhhHHHHHHHHHhcCcHH
Confidence 8999999999999999999999999987632 2578899999999999999999999999999999887
Q ss_pred ccHHHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhhhHHhhhcccCC
Q 010138 273 NTEEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAPNMTQ 327 (517)
Q Consensus 273 ~~~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLAiVFaPnLlr 327 (517)
++.++++.+|..||.+||++|+.|+.||.+|+.+++.|+||+.|||+||||+||.
T Consensus 408 qrlqAl~~aillLPDeNReaLktLL~FL~~V~an~e~N~MT~~NlsvcmAPsLF~ 462 (674)
T KOG2200|consen 408 QRLQALQLAILLLPDENREALKTLLEFLNDVIANEEENQMTLMNLSVCMAPSLFH 462 (674)
T ss_pred HHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHhHhhcccchhhhhhhhcchHHh
Confidence 3457888999999999999999999999999999999999999999999999985
No 36
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.8e-34 Score=280.14 Aligned_cols=181 Identities=18% Similarity=0.188 Sum_probs=153.0
Q ss_pred ccccccccccccCCCCCCccHHHHHHHHHHHHcCC--CccC----CceeccCChhHHHHHHHHHhcCCCC-------CCC
Q 010138 174 FGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGG--LKAE----GIFRINAENSQEEYVRDQLNKGVVP-------HGI 240 (517)
Q Consensus 174 FGv~L~~L~~~~~~~g~~VP~IL~~~i~~Lie~~G--L~~E----GIFRisGs~~~I~~Lr~~Ld~g~~~-------~~~ 240 (517)
|||+|+.+.. ..+..||.+|.+|++|| +++| +..+ ||||++|+..++++||++|++|... ..+
T Consensus 1 FGv~L~~~~~---~~~~~VP~vV~~ci~~i-e~~~~~l~~~~~~~Gi~r~sg~~~~i~~Lr~~~d~~~~~~~~~~~~~~~ 76 (212)
T cd04399 1 FGVDLETRCR---LDKKVVPLIVSAILSYL-DQLYPDLINDEVRRNVWTDPVSLKETHQLRNLLNKPKKPDKEVIILKKF 76 (212)
T ss_pred CCCcHHHHHh---hcCCCCCHHHHHHHHHH-HHhCccccCCcceeeEEEecCcHHHHHHHHHHHcCCCCcchhhhccccC
Confidence 9999998753 23567999999999998 5543 4333 9999999999999999999998542 468
Q ss_pred chhhhHHHHHHHHHhCCCCCCCCCChHHHhhcc-------------cHHHHHHHHHhcChhHHHHHHHHHHHhhHhhhcc
Q 010138 241 DVHCLAGLIKAWLRELPTGVLDSLTPDQVMHCN-------------TEEDCTQLVKLLPPSEAALLDWAINLMADVVQHE 307 (517)
Q Consensus 241 D~h~VAsLLK~fLReLPePLlp~~ly~~~i~~~-------------~~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s 307 (517)
|+|+||++||.|||+||+||||+++|+.|+++. +.++++.++.+||..|+.+|++|+.||++|++++
T Consensus 77 dv~~va~~LK~ylReLPepL~~~~~y~~~~~~~~~~~~~~~~~~~~r~~~l~~~l~~LP~~n~~~L~~li~hL~rv~~~~ 156 (212)
T cd04399 77 EPSTVASVLKLYLLELPDSLIPHDIYDLIRSLYSAYPPSQEDSDTARIQGLQSTLSQLPKSHIATLDAIITHFYRLIEIT 156 (212)
T ss_pred CHHHHHHHHHHHHHHCCCccCCHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987541 2346888999999999999999999999999987
Q ss_pred ccC---CCChhhhHHhhhcccCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 010138 308 QYN---KMNARNIAMVFAPNMTQMADPLTALIHAVQVMNFLKTLILKILREREE 358 (517)
Q Consensus 308 ~~N---KMt~~NLAiVFaPnLlr~~d~~~~l~~~~~~~~~v~~LIen~l~~fee 358 (517)
..| ||++.|||+||||+|+|+.......++......++..||+|+-+.|++
T Consensus 157 ~~~~~~kM~~~nLa~vfgp~llr~~~~~~~~~~~~~~~~~~e~Li~~~~~iF~~ 210 (212)
T cd04399 157 KMGESEEEYADKLATSLSREILRPIIESLLTIGDKHGYKFFRDLLTHKDQIFSE 210 (212)
T ss_pred hcccccccCHHHHHHHhhhhhcCCCcccccccccHHHHHHHHHHHHhHHHhccc
Confidence 666 699999999999999998754444455667789999999999888854
No 37
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=6.7e-34 Score=275.91 Aligned_cols=159 Identities=18% Similarity=0.328 Sum_probs=137.5
Q ss_pred ccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHH-HhcCC-----C--C-CCCchhhhHHHHHHHHHhCCCCCCC
Q 010138 192 VPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQ-LNKGV-----V--P-HGIDVHCLAGLIKAWLRELPTGVLD 262 (517)
Q Consensus 192 VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~-Ld~g~-----~--~-~~~D~h~VAsLLK~fLReLPePLlp 262 (517)
.+.+|.+|++|| +++|+++|||||++|+..+|+++++. ++.+. . . ..+|+|+||++||+|||+||+||||
T Consensus 28 ~~~iv~~ci~~l-e~~gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~~~~d~h~va~lLK~fLReLPePLi~ 106 (203)
T cd04374 28 GFKFVRKCIEAV-ETRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIKTITSALKTYLRNLPEPLMT 106 (203)
T ss_pred cHHHHHHHHHHH-HHcCCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCccccccccccccHHHHHHHHHHHHHcCCCCcCC
Confidence 345889999998 68999999999999999999999875 56541 1 1 2589999999999999999999999
Q ss_pred CCChHHHhhccc-------HHHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhhhHHhhhcccCCCCCh-hHH
Q 010138 263 SLTPDQVMHCNT-------EEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAPNMTQMADP-LTA 334 (517)
Q Consensus 263 ~~ly~~~i~~~~-------~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLAiVFaPnLlr~~d~-~~~ 334 (517)
+++|+.|+.+.+ ..+++.++.+||+.|+.+|++|+.||++|+++++.|||++.|||+||||+|+|+.+. ...
T Consensus 107 ~~~y~~~i~~~~~~~~~~ri~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~~~~~~ 186 (203)
T cd04374 107 YELHNDFINAAKSENLESRVNAIHSLVHKLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGVVFGPTLLRPQEETVAA 186 (203)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHhccccCCCCCccHHH
Confidence 999999988632 346788999999999999999999999999999999999999999999999998764 445
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010138 335 LIHAVQVMNFLKTLILK 351 (517)
Q Consensus 335 l~~~~~~~~~v~~LIen 351 (517)
+.+......+++.||+|
T Consensus 187 ~~~~~~~~~vve~LIeN 203 (203)
T cd04374 187 IMDIKFQNIVVEILIEN 203 (203)
T ss_pred HHHhHHHHHHhhhHhcC
Confidence 66666677888888875
No 38
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas
Probab=100.00 E-value=3.5e-33 Score=273.50 Aligned_cols=143 Identities=19% Similarity=0.312 Sum_probs=134.3
Q ss_pred CCCccHHHHHHHHHHHHcCCCccCCceeccCChhH----HHHHHHHHhcCCCC-CCCchhhhHHHHHHHHHhCCCCCCCC
Q 010138 189 GNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQ----EEYVRDQLNKGVVP-HGIDVHCLAGLIKAWLRELPTGVLDS 263 (517)
Q Consensus 189 g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~----I~~Lr~~Ld~g~~~-~~~D~h~VAsLLK~fLReLPePLlp~ 263 (517)
...||.+|.+|++|| +++|+.+|||||++|+... ++++++.+|+|... ...|+|+||++||.|||+||+||||+
T Consensus 47 ~~~iP~~l~~~i~~L-~~~gl~~eGiFR~~G~~~~~~~~i~~l~~~ld~~~~~~~~~~~~~va~~LK~fLr~LpePlip~ 125 (220)
T cd04380 47 PLSIPKEIWRLVDYL-YTRGLAQEGLFEEPGLPSEPGELLAEIRDALDTGSPFNSPGSAESVAEALLLFLESLPDPIIPY 125 (220)
T ss_pred ccccCHHHHHHHHHH-HHcCCcccCcccCCCcccchHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhCCCCccCH
Confidence 447999999999999 5799999999999999999 99999999998644 78899999999999999999999999
Q ss_pred CChHHHhhc--ccHHHHHHHHH-hcChhHHHHHHHHHHHhhHhhhccccCCCChhhhHHhhhcccCCCCChh
Q 010138 264 LTPDQVMHC--NTEEDCTQLVK-LLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAPNMTQMADPL 332 (517)
Q Consensus 264 ~ly~~~i~~--~~~e~l~~Ll~-~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLAiVFaPnLlr~~d~~ 332 (517)
.+|+.++++ ...+.++.++. +||+.|+.+|.||+.||++|+++++.|||+++|||+||||+|+|.+.+.
T Consensus 126 ~~y~~~~~~~~~~~~~~~~ll~~~LP~~n~~~l~~L~~fL~~v~~~~~~nkM~~~nLA~vF~P~Llr~~~~~ 197 (220)
T cd04380 126 SLYERLLEAVANNEEDKRQVIRISLPPVHRNVFVYLCSFLRELLSESADRGLDENTLATIFGRVLLRDPPRA 197 (220)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHhHHHhcchhccCCccc
Confidence 999999998 67788999999 9999999999999999999999999999999999999999999988753
No 39
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=99.97 E-value=2.2e-31 Score=249.01 Aligned_cols=160 Identities=30% Similarity=0.483 Sum_probs=146.1
Q ss_pred CccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCCC----CCCCchhhhHHHHHHHHHhCCCCCCCCCCh
Q 010138 191 SVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVV----PHGIDVHCLAGLIKAWLRELPTGVLDSLTP 266 (517)
Q Consensus 191 ~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~~----~~~~D~h~VAsLLK~fLReLPePLlp~~ly 266 (517)
.||.+|..|+.||+ ++|+++|||||++|+..+++++++.++.+.. ...+|+|++|++||+|||+||+|||+.+.|
T Consensus 2 ~vP~~l~~~~~~l~-~~g~~~egiFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~Lr~Lp~pli~~~~~ 80 (174)
T smart00324 2 PIPIIVEKCIEYLE-KRGLDTEGIYRVSGSKSRVKELREAFDSGPDPDLDLSEYDVHDVAGLLKLFLRELPEPLIPYELY 80 (174)
T ss_pred CCChHHHHHHHHHH-HcCCCccceeecCCcHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCCCccCCHHHH
Confidence 49999999999995 5999999999999999999999999999864 457999999999999999999999999999
Q ss_pred HHHhhccc-------HHHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhhhHHhhhcccCCCCChhH-HHHHH
Q 010138 267 DQVMHCNT-------EEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAPNMTQMADPLT-ALIHA 338 (517)
Q Consensus 267 ~~~i~~~~-------~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLAiVFaPnLlr~~d~~~-~l~~~ 338 (517)
+.++++.+ ...++.++.+||+.|+.+|.+|+.||++|+.+++.|+|+++|||+||||+|++.++... .+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~Lp~~~~~~L~~l~~~l~~i~~~~~~n~M~~~nLa~~f~P~l~~~~~~~~~~~~~~ 160 (174)
T smart00324 81 EEFIEAAKVEDETERLRALRELISLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGEVASLKDI 160 (174)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCcccHHHHHHH
Confidence 99987643 35688999999999999999999999999999999999999999999999999988654 46677
Q ss_pred HHHHHHHHHHHHH
Q 010138 339 VQVMNFLKTLILK 351 (517)
Q Consensus 339 ~~~~~~v~~LIen 351 (517)
.....++++||++
T Consensus 161 ~~~~~~i~~li~~ 173 (174)
T smart00324 161 RHQNTVVETLIEN 173 (174)
T ss_pred HHHHHHHHHHHhc
Confidence 8888999999875
No 40
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=99.97 E-value=1.6e-30 Score=291.60 Aligned_cols=193 Identities=24% Similarity=0.377 Sum_probs=168.1
Q ss_pred CCCCccccccccccccccCCCCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCCC--------CCC
Q 010138 168 SASVSVFGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVV--------PHG 239 (517)
Q Consensus 168 ~~~~~vFGv~L~~L~~~~~~~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~~--------~~~ 239 (517)
.++.++|||+|.+ |.......-||.||..|+. |+|.+||++.|||||+|++..|..|++.+|.+.| +..
T Consensus 1152 ~~~~~~~GVrl~d--CP~~~~n~yVP~iV~~C~~-vVEt~Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~DdrW 1228 (1973)
T KOG4407|consen 1152 GAPQPVLGVRLAD--CPTGSCNDYVPMIVQACVC-VVETYGLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESLDDRW 1228 (1973)
T ss_pred cCcCccccccccc--CCcccccccchHHHHHHHH-HHhhcCccceeEEecCCcHHHHHHHHHHHhccccchhhhccccch
Confidence 3467799999997 4445556789999999985 5699999999999999999999999999998743 246
Q ss_pred CchhhhHHHHHHHHHhCCCCCCCCCChHHHhhcccH-------HHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCC
Q 010138 240 IDVHCLAGLIKAWLRELPTGVLDSLTPDQVMHCNTE-------EDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKM 312 (517)
Q Consensus 240 ~D~h~VAsLLK~fLReLPePLlp~~ly~~~i~~~~~-------e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKM 312 (517)
.|+++|.+|||.|||.||+||||..+|..||++++. ..++.||.+||.++|.+|++|+.||.+|+.|+++|||
T Consensus 1229 rDvNVVSSLLK~F~RkLPepL~t~~~Y~~FIeAnrk~~~l~Rl~~Lr~l~~~LPrhhYeTlkfLi~HL~~Vt~nsdvNkM 1308 (1973)
T KOG4407|consen 1229 RDVNVVSSLLKMFLRKLPEPLLTDKLYPFFIEANRKSTHLNRLHKLRNLLRKLPRHHYETLKFLIVHLSEVTKNSDVNKM 1308 (1973)
T ss_pred hhhHHHHHHHHHHHHhCCcccccccchhhhhhhcccccHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHhcccccccc
Confidence 799999999999999999999999999999998654 3578899999999999999999999999999999999
Q ss_pred ChhhhHHhhhcccCCCCCh-hH-HHHHHHHHHHHHHHHHHHHHHhhHHHHhhh
Q 010138 313 NARNIAMVFAPNMTQMADP-LT-ALIHAVQVMNFLKTLILKILREREEAAAKA 363 (517)
Q Consensus 313 t~~NLAiVFaPnLlr~~d~-~~-~l~~~~~~~~~v~~LIen~l~~fee~~~~a 363 (517)
-++||||+|||+|+|.++. +. ...++....++|++||.++.-.|++.-...
T Consensus 1309 EprNLAi~FGPsiVRts~Dnm~tmVthM~dQckIVEtLI~~~dwfF~esg~te 1361 (1973)
T KOG4407|consen 1309 EPRNLAIMFGPSIVRTSDDNMATMVTHMSDQCKIVETLIHYNDWFFDESGTTE 1361 (1973)
T ss_pred cccceeEEeccceeccCCccHHHHhhcchhhhhHHHHHHhhhhheeccCCCcc
Confidence 9999999999999998864 33 334667788999999999888887765443
No 41
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=99.97 E-value=5.7e-30 Score=236.11 Aligned_cols=157 Identities=31% Similarity=0.482 Sum_probs=142.0
Q ss_pred cHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCCC---CCCCchhhhHHHHHHHHHhCCCCCCCCCChHHH
Q 010138 193 PTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVV---PHGIDVHCLAGLIKAWLRELPTGVLDSLTPDQV 269 (517)
Q Consensus 193 P~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~~---~~~~D~h~VAsLLK~fLReLPePLlp~~ly~~~ 269 (517)
|.+|..|++||. ++|+.++||||++|+..+++.+++.++.+.. ...+|+|++|++||.|||+||+|||+.+.|+.+
T Consensus 1 P~~l~~~~~~l~-~~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~va~~lK~~l~~Lp~pli~~~~~~~~ 79 (169)
T cd00159 1 PLIIEKCIEYLE-KNGLNTEGIFRVSGSASKIEELKKKFDRGEDIDDLEDYDVHDVASLLKLYLRELPEPLIPFELYDEF 79 (169)
T ss_pred ChHHHHHHHHHH-HcCCCcCCeeeCCCcHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHcCCCccCCHHHHHHH
Confidence 789999999984 5999999999999999999999999999875 368999999999999999999999999999999
Q ss_pred hhcc-------cHHHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhhhHHhhhcccCCCCChh-HHHHHHHHH
Q 010138 270 MHCN-------TEEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAPNMTQMADPL-TALIHAVQV 341 (517)
Q Consensus 270 i~~~-------~~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLAiVFaPnLlr~~d~~-~~l~~~~~~ 341 (517)
+.+. +.+.++.++.+||+.|+.+|.+|+.||++|+.+++.|+|+++|||+||||+|++...+. .........
T Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~M~~~nLa~~f~p~l~~~~~~~~~~~~~~~~~ 159 (169)
T cd00159 80 IELAKIEDEEERIEALKELLKSLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPDSDDELLEDIKKL 159 (169)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHccccCCCCCccHHHHHHhHHH
Confidence 8873 45678899999999999999999999999999999999999999999999999988754 445566667
Q ss_pred HHHHHHHHH
Q 010138 342 MNFLKTLIL 350 (517)
Q Consensus 342 ~~~v~~LIe 350 (517)
..+++.||.
T Consensus 160 ~~~~~~li~ 168 (169)
T cd00159 160 NEIVEFLIE 168 (169)
T ss_pred HHHHHHHHh
Confidence 788888775
No 42
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=99.96 E-value=1.2e-29 Score=278.55 Aligned_cols=166 Identities=25% Similarity=0.442 Sum_probs=143.1
Q ss_pred CCCCCCCccccccccccccc-cCCCCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCCC------C
Q 010138 165 KAPSASVSVFGVSAKSMQCS-YDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVV------P 237 (517)
Q Consensus 165 ~~p~~~~~vFGv~L~~L~~~-~~~~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~~------~ 237 (517)
+.+-.+..|||.+|..-+.. ..+....+|.||.+|++||+..+|+++|||||++|+...|+.|+++||.+.. .
T Consensus 891 ~~~~~qTgIFG~~~~~kisv~t~~n~s~lP~VVyrCvEyle~~RgieEeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~d 970 (1112)
T KOG4269|consen 891 KPSVKQTGIFGLPLNVKISVVTKRNVSGLPYVVYRCVEYLESCRGIEEEGIYRLSGSATDIKALKEQFDENVNKDILSMD 970 (1112)
T ss_pred CCcceeceeccccceeeEeeeeeecccCCchHHHHHHHHHHhccccchhceEEecccHHHHHHHHHHhccccCchhhhcc
Confidence 34555789999776542211 1123457999999999999779999999999999999999999999999832 3
Q ss_pred CCCchhhhHHHHHHHHHhCCCCCCCCCChHHHhhc-------ccHHHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccC
Q 010138 238 HGIDVHCLAGLIKAWLRELPTGVLDSLTPDQVMHC-------NTEEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYN 310 (517)
Q Consensus 238 ~~~D~h~VAsLLK~fLReLPePLlp~~ly~~~i~~-------~~~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~N 310 (517)
+..|||+||++||+|||+||+|||+.++|..|... +.+-.+..||..||++|..+|.+|+.||.+|++++.+|
T Consensus 971 ~E~dVn~IaGlLKLYlR~LP~~Ll~de~~~~F~~~i~~~npva~~~~~~~li~slP~aNl~l~~~LlehL~RI~e~ekvN 1050 (1112)
T KOG4269|consen 971 SEMDVNAIAGLLKLYLRELPEPLLTDEMYPLFEEGIALSNPVAKEGCMCDLISSLPPANLALFLFLLEHLKRIAEKEKVN 1050 (1112)
T ss_pred ccccHHHHHHHHHHHHHhCCccccchhhhHHHHhhccCCCHHHHHhhHHHHHHhCCChhHHHHHHHHHHHHHHHhhcccc
Confidence 67999999999999999999999999999988765 22345888999999999999999999999999999999
Q ss_pred CCChhhhHHhhhcccCCCCC
Q 010138 311 KMNARNIAMVFAPNMTQMAD 330 (517)
Q Consensus 311 KMt~~NLAiVFaPnLlr~~d 330 (517)
||+++||||||+|+|.++.+
T Consensus 1051 KMnlrNlciVFsPTLniPse 1070 (1112)
T KOG4269|consen 1051 KMNLRNLCIVFSPTLNIPSE 1070 (1112)
T ss_pred cccccceeeeecccccCcHH
Confidence 99999999999999998876
No 43
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation. Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....
Probab=99.95 E-value=2.2e-28 Score=222.98 Aligned_cols=138 Identities=35% Similarity=0.565 Sum_probs=124.7
Q ss_pred cHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCCC----CCCCchhhhHHHHHHHHHhCCCCCCCCCChHH
Q 010138 193 PTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVV----PHGIDVHCLAGLIKAWLRELPTGVLDSLTPDQ 268 (517)
Q Consensus 193 P~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~~----~~~~D~h~VAsLLK~fLReLPePLlp~~ly~~ 268 (517)
|.+|..|++|| +++|+.++||||++|+..+++++++.++.|.. .+.+|+|+||++||.||++||+||++.++|+.
T Consensus 1 P~~l~~~~~~l-~~~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~L~~lp~pli~~~~~~~ 79 (151)
T PF00620_consen 1 PRILNDCVDYL-EKKGLETEGIFRIPGSSSEVQELRNKIDSGEPPNENLENYDVHDVASLLKRFLRELPEPLIPSELYDK 79 (151)
T ss_dssp EHHHHHHHHHH-HHHTTTSTTTTTSS--HHHHHHHHHHHHTTTTCSTTGTTSTHHHHHHHHHHHHHHSSSTSTTHHHHHH
T ss_pred ChHHHHHHHHH-HHhCCCCCCceeccCCHHHHHHHHHHHHhhhcccccccccChhhccccceeeeeccccchhhhhHHHH
Confidence 88999999998 56999999999999999999999999999864 47899999999999999999999999999999
Q ss_pred Hhhc-------ccHHHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhhhHHhhhcccCCCCCh
Q 010138 269 VMHC-------NTEEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAPNMTQMADP 331 (517)
Q Consensus 269 ~i~~-------~~~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLAiVFaPnLlr~~d~ 331 (517)
|+.+ .+.+.++.++..||..|+.+|.+|+.||++|+.+++.|+|++.|||+||||+|++.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~~l~~l~~~l~~v~~~~~~n~m~~~~La~~f~P~l~~~~~~ 149 (151)
T PF00620_consen 80 FIAASKSADEEEQIEAIRSLLQSLPPSNRSLLKYLIELLSKVSDNSEINKMTAENLAIIFAPSLFRPPSS 149 (151)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTGSTS
T ss_pred HhhhhccchhhHHHHHHHHhhhccccccceeehhcccchhhhhcccccccCCHHHHHHHHHhHcCCCCcC
Confidence 9964 23356889999999999999999999999999999999999999999999999998764
No 44
>KOG1450 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.95 E-value=1.6e-27 Score=259.70 Aligned_cols=183 Identities=22% Similarity=0.423 Sum_probs=157.9
Q ss_pred CCccccccccccccccCCCCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCCC-----CCCCchhh
Q 010138 170 SVSVFGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVV-----PHGIDVHC 244 (517)
Q Consensus 170 ~~~vFGv~L~~L~~~~~~~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~~-----~~~~D~h~ 244 (517)
...+||++|+.+ |+ +.+..||.+|.+|+..+ +..|++.+||||++|+...|++||.++|.... ....|+|+
T Consensus 453 ~~~vFGs~Leal-c~--rE~~~vP~~V~~c~~~I-E~~GLd~~GiYRVsgnl~~Vnklr~~~d~d~~l~l~~~~~~diha 528 (650)
T KOG1450|consen 453 FDKVFGSPLEAL-CQ--RENGLVPKIVRLCIEHI-EKFGLDSDGIYRVSGNLASVNKLREQSDQDNSLDLADDRWDDIHA 528 (650)
T ss_pred cCcccCccHHHH-hh--ccCCCcchHHHHHHHHH-hhhcccCCceeeecchHHHHHHHHHhcCccccccccccchhHHHH
Confidence 468999999987 44 34678999999999887 89999999999999999999999999995432 23579999
Q ss_pred hHHHHHHHHHhCCCCCCCCCChHHHhhcc-------cHHHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhhh
Q 010138 245 LAGLIKAWLRELPTGVLDSLTPDQVMHCN-------TEEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNI 317 (517)
Q Consensus 245 VAsLLK~fLReLPePLlp~~ly~~~i~~~-------~~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NL 317 (517)
|+++||.||||||+||++..+...|..+. +.+..++++..||..|+.||+||+.||++|.+|+++|||+.+||
T Consensus 529 i~galK~ffreLpdpL~p~~l~~~f~~a~~~~~~~~r~~~~~~li~~lP~~n~~Tlr~lv~HL~rv~shs~kNrMs~~NL 608 (650)
T KOG1450|consen 529 ITGALKTFFRELPDPLFPKALSKDFTVALQGELSHTRVDKVEELIGLLPDANYQTLRYLVRHLRRVLSHSDKNRMSRHNL 608 (650)
T ss_pred HHHHHHHHHHhcCCcccChhHhHHHHHHhcccchhhHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhccccccccccce
Confidence 99999999999999999999999998773 34568889999999999999999999999999999999999999
Q ss_pred HHhhhcccCCCCCh-hHHHHHHHHHHHHHHHHHHHHHHhh
Q 010138 318 AMVFAPNMTQMADP-LTALIHAVQVMNFLKTLILKILRER 356 (517)
Q Consensus 318 AiVFaPnLlr~~d~-~~~l~~~~~~~~~v~~LIen~l~~f 356 (517)
||||||+|+.+.+. .....+...+..+|+.||++.-+.|
T Consensus 609 aIVfgpTl~~~~~~~~~~a~~~~~~~~ivq~lle~~~~~f 648 (650)
T KOG1450|consen 609 AIVFGPTLIKPEQETSSEAIHSTYQSQIVQLLLENVSSAF 648 (650)
T ss_pred EEEeccccccccccccchhhHHhHHHHHHHHHHHhhHhhc
Confidence 99999999996654 2223456677788888888776655
No 45
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=99.94 E-value=5.4e-27 Score=249.38 Aligned_cols=163 Identities=17% Similarity=0.282 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhc--------CCCCCCCchhhhHHHHHHHHHhCCCCCCCCCC
Q 010138 194 TILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNK--------GVVPHGIDVHCLAGLIKAWLRELPTGVLDSLT 265 (517)
Q Consensus 194 ~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~--------g~~~~~~D~h~VAsLLK~fLReLPePLlp~~l 265 (517)
.+|.+||..| +..|++++|+||..|.+.+|++|...+-. +...+.||+.+|.+.||.|||.||+||+++++
T Consensus 390 ~fvrkCI~i~-Et~GI~eqGlYR~vGvns~VQKlln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRnLpEPLMTY~L 468 (812)
T KOG1451|consen 390 EFVRKCIDIL-ETSGIHEQGLYRNVGVNSKVQKLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRNLPEPLMTYEL 468 (812)
T ss_pred HHHHHHHHHH-HhcCcccccchhhccchHHHHHHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHhCCchhhHHHH
Confidence 3789999765 89999999999999999999999876532 11236799999999999999999999999999
Q ss_pred hHHHhhcc-------cHHHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhhhHHhhhcccCCCCC-hhHHHHH
Q 010138 266 PDQVMHCN-------TEEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAPNMTQMAD-PLTALIH 337 (517)
Q Consensus 266 y~~~i~~~-------~~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLAiVFaPnLlr~~d-~~~~l~~ 337 (517)
+..|+.+. ++++++.||.+||+.||.+|..||+||.+|+.|+..|.||+.||++||||+|+|+.. ...++|+
T Consensus 469 Hk~FI~AAKsdnq~yRv~aIHsLVHkLPEKNReMLelLirHLvnVa~hSkeNLMTVSNLGViFGPTLlRpQEETVAAiMd 548 (812)
T KOG1451|consen 469 HKVFINAAKSDNQTYRVDAIHSLVHKLPEKNREMLELLIRHLVNVADHSKENLMTVSNLGVIFGPTLLRPQEETVAAIMD 548 (812)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHhccHhhHHHHHHHHHHHHHHHhhhhcccccccccceeecccccCchHHHHHHHHc
Confidence 99999884 457899999999999999999999999999999999999999999999999999986 4666777
Q ss_pred HHHHHHHHHHHHHHHHHhhH
Q 010138 338 AVQVMNFLKTLILKILRERE 357 (517)
Q Consensus 338 ~~~~~~~v~~LIen~l~~fe 357 (517)
+.-.+-+++.||+||-++|.
T Consensus 549 IKFQNIVVEILIEnyeKIF~ 568 (812)
T KOG1451|consen 549 IKFQNIVVEILIENYEKIFK 568 (812)
T ss_pred chhhhhhHHHHHhhhHHHhc
Confidence 77777778889999988884
No 46
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.94 E-value=4.7e-27 Score=243.28 Aligned_cols=189 Identities=28% Similarity=0.378 Sum_probs=167.8
Q ss_pred CCCCCCccccccccccccccCCCCCCccHHHHHHHHHHHHcCC-CccCCceeccCChhHHHHHHHHHhcCCCC---CCCc
Q 010138 166 APSASVSVFGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGG-LKAEGIFRINAENSQEEYVRDQLNKGVVP---HGID 241 (517)
Q Consensus 166 ~p~~~~~vFGv~L~~L~~~~~~~g~~VP~IL~~~i~~Lie~~G-L~~EGIFRisGs~~~I~~Lr~~Ld~g~~~---~~~D 241 (517)
++......|||+|+-+.. ....+..||.+|..|+.|| +..| +++|||||.+++.+.+.++++.+|+|..+ ..-|
T Consensus 246 r~pl~t~qFgvpLqf~~~-~~~e~~~iPpiv~~tV~~L-~~~~kl~tEG~FRrS~s~~~i~~~q~~~n~G~pVdle~~~~ 323 (467)
T KOG4406|consen 246 RPPLPTQQFGVPLQFIPE-KNPEGESIPPIVRSTVEYL-QAHGKLTTEGLFRRSASRSPIREVQELYNTGEPVDLEVYKD 323 (467)
T ss_pred CCCCchhhcCccHHHhcc-cCcccCCCCcHHHHHhhhh-hccceecccceeccccCccchHHHHHHhcCCCcccHHHhcc
Confidence 444567899999998753 3445789999999999998 6788 99999999999999999999999999754 2445
Q ss_pred hhhhHHHHHHHHHhCCCCCCCCCChHHHhhcccH------HHHHHHHHh-cChhHHHHHHHHHHHhhHhhhccccCCCCh
Q 010138 242 VHCLAGLIKAWLRELPTGVLDSLTPDQVMHCNTE------EDCTQLVKL-LPPSEAALLDWAINLMADVVQHEQYNKMNA 314 (517)
Q Consensus 242 ~h~VAsLLK~fLReLPePLlp~~ly~~~i~~~~~------e~l~~Ll~~-LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~ 314 (517)
+|..|.+||.|||+||+||++.++|+.+...... ..+++|++. ||+.|+.++++++.||.+|++|+..|+||+
T Consensus 324 ~h~~avllKtF~R~LpePL~t~~~y~~lt~~~~~~~~~~s~s~~qli~~~lp~~ny~L~r~i~sfL~~Is~~~~~N~M~~ 403 (467)
T KOG4406|consen 324 LHAPAVLLKTFLRSLPEPLLTFRLYESLTGFSNVDKSLRSSSTDQLIRPTLPEENYSLLRYISSFLVQISDNSKENKMTA 403 (467)
T ss_pred chhhHHHHHHHHhcCCcccchhhhhhhhhccccchHHhhhhHHHHHhhccCChhHHHHHHHHHHHHHHHHHhHHHhhhcc
Confidence 9999999999999999999999999998765333 357888886 999999999999999999999999999999
Q ss_pred hhhHHhhhcccCCCCChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 010138 315 RNIAMVFAPNMTQMADPLTALIHAVQVMNFLKTLILKILRER 356 (517)
Q Consensus 315 ~NLAiVFaPnLlr~~d~~~~l~~~~~~~~~v~~LIen~l~~f 356 (517)
.|||+||||+|++..+....+.....+..|.+.+|+++-+.|
T Consensus 404 sNLa~vfGpnl~w~~~~s~tl~q~npin~F~~~li~~~~~~f 445 (467)
T KOG4406|consen 404 SNLAVVFGPNLLWAQDESLTLKQINPINKFTKFLIEHYKKLF 445 (467)
T ss_pred ccceeeecccccccccccccHHHhccHHHHHHHHHHhhhhcc
Confidence 999999999999999888888888999999999999987777
No 47
>KOG2710 consensus Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.91 E-value=1.4e-24 Score=228.08 Aligned_cols=166 Identities=22% Similarity=0.358 Sum_probs=142.4
Q ss_pred CCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCC-------CCCCCchhhhHHHHHHHHHhCCCCCCC
Q 010138 190 NSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGV-------VPHGIDVHCLAGLIKAWLRELPTGVLD 262 (517)
Q Consensus 190 ~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~-------~~~~~D~h~VAsLLK~fLReLPePLlp 262 (517)
..||.+|..|++|| +++|+.+.||||++|+..++++|++.|+++. .++.+++|+||++||+|||+||+||||
T Consensus 92 ~~IP~vv~~c~~~l-k~~~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~~~~~~~e~~nvHDvAaLLK~flr~lp~pLLP 170 (412)
T KOG2710|consen 92 GQIPRVVAKCGQYL-KKNGLSVVGIFRVAGSIKRVRQLREEFDSPPDYGIDVNDWEDFNVHDVAALLKEFLRDLPDPLLP 170 (412)
T ss_pred eeCcHHHHHHHHHH-HHcCceeeeeeecCCchHHHHHHHHHhccCccccccccccccccHHHHHHHHHHHHHhCCcccCC
Confidence 47999999999998 7999999999999999999999999999973 357899999999999999999999999
Q ss_pred CCChHHHhhcccH-------HHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccC-----------CCChhhhHHhhhcc
Q 010138 263 SLTPDQVMHCNTE-------EDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYN-----------KMNARNIAMVFAPN 324 (517)
Q Consensus 263 ~~ly~~~i~~~~~-------e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~N-----------KMt~~NLAiVFaPn 324 (517)
.++|+.|+...++ ..++.++..||..|+++|.+|+.||+.|+.+++.| ||++.|||+||+|+
T Consensus 171 ~~LY~~f~~p~kl~~e~e~~~~l~l~~~llp~~nr~~l~~ll~fL~~~a~~s~d~~~kdg~~~~gnkm~~~nlatIf~P~ 250 (412)
T KOG2710|consen 171 LELYESFINPAKLEPETEQLGVLQLLIYLLPKCNRDTLEVLLGFLSVVASHAEDNIGKDGQEVNGNKMTSENLATIFGPN 250 (412)
T ss_pred HHHHHHHhhhhcCCcHHHHHHHHHHHHHhcCccchhHHHHHHhhhhhhhcccccccccccccccCcccchhhhhhhhcch
Confidence 9999999986432 34778889999999999999999999999999998 99999999999999
Q ss_pred cCCC----CCh-----hHHHHHHHHHHHHHHHHHHHHHHhh
Q 010138 325 MTQM----ADP-----LTALIHAVQVMNFLKTLILKILRER 356 (517)
Q Consensus 325 Llr~----~d~-----~~~l~~~~~~~~~v~~LIen~l~~f 356 (517)
|+.. .+. .........+.+|+..+|+|+-..|
T Consensus 251 iL~k~~~~~~~~s~~~~~~~s~~~~i~~~~~~~~~N~e~~f 291 (412)
T KOG2710|consen 251 ILYKLKGSHKELSVTGVANESESEAIVNFAQMMIENLEALF 291 (412)
T ss_pred hhhcccCCCcccccccccchhhHHHHHHHHHHhhhhHHHhh
Confidence 9983 111 1112344566788888888764443
No 48
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=99.90 E-value=2.8e-24 Score=247.23 Aligned_cols=179 Identities=24% Similarity=0.362 Sum_probs=152.5
Q ss_pred cccccccccccccCCCCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCC---CCCCCchhhhHHHH
Q 010138 173 VFGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGV---VPHGIDVHCLAGLI 249 (517)
Q Consensus 173 vFGv~L~~L~~~~~~~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~---~~~~~D~h~VAsLL 249 (517)
+||+.|..+. .+ ....||.++.+|+.|| +.+|+.+|||||++|...+++.|...++.+. .....|+|++++++
T Consensus 602 ~fG~~l~~~~-~~--e~~~vP~i~~~c~~~i-e~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~dih~vtsVl 677 (918)
T KOG1453|consen 602 LFGVSLSELA-RY--EPSTVPFILKKCLREI-EAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTPDIHAVTSVL 677 (918)
T ss_pred cccHHHHHhh-cc--CCCCCCHHHHHHHHHH-HHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCCChHHHHHHH
Confidence 9999998864 32 3567999999999998 8999999999999999999999999999974 45789999999999
Q ss_pred HHHHHhCCCCCCCCCChHHHhhcccH-------------HHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhh
Q 010138 250 KAWLRELPTGVLDSLTPDQVMHCNTE-------------EDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARN 316 (517)
Q Consensus 250 K~fLReLPePLlp~~ly~~~i~~~~~-------------e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~N 316 (517)
|+|||+||+|||++.+|+.|+.+.+. ..+..++..||+.|+++|++|+.||.+|+.+++.|+|++.|
T Consensus 678 K~yLr~Lp~pIi~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LP~~~~~vl~~li~Hl~RV~~~~~~NrM~~~n 757 (918)
T KOG1453|consen 678 KLYLRKLPEPIIIFNLYDEFLSAAKLPEKDEPSRSTEPLRKLKEVLEQLPRAHYEVLRRLIAHLKRVARYEDVNRMTPKN 757 (918)
T ss_pred HHHHHhccccccccchHHHHHhhhccccccccccccccchhHHHHHHhcCHhHHHHHHHHHHHHHHHHHhhHhhcCCCCC
Confidence 99999999999999999999987433 35778899999999999999999999999999999999999
Q ss_pred hHHhhhcccCCCCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 010138 317 IAMVFAPNMTQMADPLTALIHAVQVMNFLKTLILKILRE 355 (517)
Q Consensus 317 LAiVFaPnLlr~~d~~~~l~~~~~~~~~v~~LIen~l~~ 355 (517)
||+||||+|+|++++...+.......-.+.++|.++...
T Consensus 758 laivF~Ptllr~~d~~~~~~~~~~~~y~~~~~l~~~~~~ 796 (918)
T KOG1453|consen 758 LAIVFAPTLLRPPDGTRDLTDMKDKNYPLAAQLPEYKIT 796 (918)
T ss_pred ccccccCcccCCCCCcchhhhhccchhhHHHhcchHHHH
Confidence 999999999999997665554433333344444444333
No 49
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=99.90 E-value=3.5e-23 Score=216.73 Aligned_cols=160 Identities=20% Similarity=0.316 Sum_probs=141.1
Q ss_pred CCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCCC---CCCCchhhhHHHHHHHHHhCCCCCCCCCCh
Q 010138 190 NSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVV---PHGIDVHCLAGLIKAWLRELPTGVLDSLTP 266 (517)
Q Consensus 190 ~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~~---~~~~D~h~VAsLLK~fLReLPePLlp~~ly 266 (517)
.-||.+|..|+..| |.+||.+|||||++|....++.|++++-+|.- ....|+|++|++||.|||.|.+||||....
T Consensus 360 PMIPalVVHCVneI-EaRGLteeGLYRvsg~~rtvk~lkekfLR~Kt~p~~g~~Dihvic~~lKdFLR~LkePLip~~~~ 438 (604)
T KOG3564|consen 360 PMIPALVVHCVNEI-EARGLTEEGLYRVSGCDRTVKRLKEKFLRGKTTPHLGNDDIHVICCCLKDFLRNLKEPLIPFRLR 438 (604)
T ss_pred ccchHHHHHHHHHH-HHccccccceeeccccHHHHHHHHHHHhccCCCCccCCcchhHHHHHHHHHHHhcccccccchHH
Confidence 45999999999998 89999999999999999999999999998864 357899999999999999999999999999
Q ss_pred HHHhhccc-------HHHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhhhHHhhhcccCC----CCChhHHH
Q 010138 267 DQVMHCNT-------EEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAPNMTQ----MADPLTAL 335 (517)
Q Consensus 267 ~~~i~~~~-------~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLAiVFaPnLlr----~~d~~~~l 335 (517)
.+|+.+.. +.++.+.|..||..||.||.|||-|+++|++ ++.|||+..|||.||||+++- .++....+
T Consensus 439 rdf~eAa~~tD~dn~~~aly~aV~ELpQAnRDTLAfLmiH~qrIAQ-sp~~kM~v~nlA~ifgPtivgh~vp~pd~~~~l 517 (604)
T KOG3564|consen 439 RDFMEAAEITDEDNSILALYQAVGELPQANRDTLAFLMIHWQRIAQ-SPRVKMNVANLARIFGPTIVGHAVPNPDQVTML 517 (604)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHh-CCcccccHHHHHHHhcchhhccCCCCccHhHHH
Confidence 99998743 2457778889999999999999999999988 779999999999999999985 23456666
Q ss_pred HHHHHHHHHHHHHHHH
Q 010138 336 IHAVQVMNFLKTLILK 351 (517)
Q Consensus 336 ~~~~~~~~~v~~LIen 351 (517)
.+.....++|+.|++-
T Consensus 518 ~dv~~q~rvmkaLlel 533 (604)
T KOG3564|consen 518 QDVKTQPRVMKALLEL 533 (604)
T ss_pred HhhhhhHHHHHHHHhC
Confidence 7777777888888753
No 50
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=99.89 E-value=5.8e-24 Score=233.26 Aligned_cols=162 Identities=24% Similarity=0.315 Sum_probs=143.0
Q ss_pred CCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCCC-----CCCCchhhhHHHHHHHHHhCCCCCCCC
Q 010138 189 GNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVV-----PHGIDVHCLAGLIKAWLRELPTGVLDS 263 (517)
Q Consensus 189 g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~~-----~~~~D~h~VAsLLK~fLReLPePLlp~ 263 (517)
+..||.||..||.|+ .++||..|||||.+|...+++.|.+.|-++.. .....+.+|+++||+|||+|++||+|.
T Consensus 724 ~~dIPvIVd~CI~FV-TqyGl~cegIYrknG~~~~~~~lLeslr~Dars~~lregeh~vedVtdvLk~FlrdlddpLft~ 802 (1186)
T KOG1117|consen 724 KNDIPVIVDSCIAFV-TQYGLGCEGIYRKNGDPLHISRLLESLRKDARSVKLREGEHQVEDVTDVLKRFLRDLDDPLFTK 802 (1186)
T ss_pred CCCCcEehHHHHHHH-HHhCccceeeeccCCchHHHHHHHHHHhhccceeeccCCcchHHHHHHHHHHHHHhCCccccch
Confidence 567999999999987 79999999999999999999999999977642 246789999999999999999999999
Q ss_pred CChHHHhhcccH-------HHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhhhHHhhhcccCCCCChhHHHH
Q 010138 264 LTPDQVMHCNTE-------EDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAPNMTQMADPLTALI 336 (517)
Q Consensus 264 ~ly~~~i~~~~~-------e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLAiVFaPnLlr~~d~~~~l~ 336 (517)
++|..|+++... ....++|..||..||.||+.||.||++|..+++.|+|+++|||.||||+||+..--
T Consensus 803 ~~~~~w~eaae~~d~~Er~~rY~~lI~~lp~VnRaTLkalIgHLy~Vqk~s~~N~mnvhNLAlVFa~sLFqTdgq----- 877 (1186)
T KOG1117|consen 803 ELYPYWIEAAETQDDKERIKRYGALIRSLPGVNRATLKALIGHLYRVQKCSEINQMNVHNLALVFAPSLFQTDGQ----- 877 (1186)
T ss_pred hhhhhHHHhhhccchHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhheecCCC-----
Confidence 999999988432 34778999999999999999999999999999999999999999999999976541
Q ss_pred HHHHHHHHHHHHHHHHHHhhH
Q 010138 337 HAVQVMNFLKTLILKILRERE 357 (517)
Q Consensus 337 ~~~~~~~~v~~LIen~l~~fe 357 (517)
..+.+++++.||.+|+..|+
T Consensus 878 -dehevnVledLingYvvVF~ 897 (1186)
T KOG1117|consen 878 -DEHEVNVLEDLINGYVVVFE 897 (1186)
T ss_pred -chhhhhHHHHHhcCceEEEE
Confidence 23567889999988866654
No 51
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.74 E-value=2e-17 Score=166.90 Aligned_cols=154 Identities=16% Similarity=0.258 Sum_probs=133.6
Q ss_pred CCccccccccccccccCCCCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCCC------CCCCchh
Q 010138 170 SVSVFGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVV------PHGIDVH 243 (517)
Q Consensus 170 ~~~vFGv~L~~L~~~~~~~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~~------~~~~D~h 243 (517)
-..+||.+|+.++. +....-|+++..|++.+ |++|++.-|+|+++|+..+-+-||+.|+.... ..-.|.+
T Consensus 181 lrgvfG~~L~~lV~---RE~~~~PIvlrR~~~Ei-EkRGvD~~Gly~lCGS~~KKkmLR~~fe~n~r~~el~~E~iPD~n 256 (442)
T KOG1452|consen 181 LRGVFGISLSRLVQ---REPESPPIVLRRLYAEI-EKRGVDYSGLYSLCGSVEKKKMLRRDFEPNGRDFELGAESIPDYN 256 (442)
T ss_pred cccccchhhHhHhh---cCCCCCchHHHHHHHHH-HhcccccccceeeechhhHHHHHHHHhccCCcccccccccCCCcc
Confidence 45699999999873 33456889999999997 89999999999999999999999999987432 1247889
Q ss_pred hhHHHHHHHHHhCCCCCCCCCChHHHhhccc----------HHHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCC
Q 010138 244 CLAGLIKAWLRELPTGVLDSLTPDQVMHCNT----------EEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMN 313 (517)
Q Consensus 244 ~VAsLLK~fLReLPePLlp~~ly~~~i~~~~----------~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt 313 (517)
+|++++|.|||||||||++...++...++.. ..-+-.+|..|+..++++|.+++.||..|.-+++.|+|+
T Consensus 257 vItg~~kD~lrElpEPl~t~~~f~m~~dA~sV~LP~dp~~N~kl~l~iidcL~r~~~~~l~~~LDHLS~Vl~sS~~N~lt 336 (442)
T KOG1452|consen 257 VITGDSKDELRELPEPLVTGQDFEMDFDAASVALPFDPHLNLKLFLAIIDCLERELSKQLNVCLDHLSTVLCSSPHNGLT 336 (442)
T ss_pred eeecccHhHHHhCCCccccchhhhhhhhhhhhcCCCCccccHHHHHHHHHHHHHHhhhhHhHHHhhhhHheecCCcCCcC
Confidence 9999999999999999999988777666522 244677889999999999999999999999999999999
Q ss_pred hhhhHHhhhcccCC
Q 010138 314 ARNIAMVFAPNMTQ 327 (517)
Q Consensus 314 ~~NLAiVFaPnLlr 327 (517)
+..||.||||-||.
T Consensus 337 ~~~Ls~i~~P~L~~ 350 (442)
T KOG1452|consen 337 PTRLSLIFAPLLFF 350 (442)
T ss_pred HHHHHHHhhhhHHH
Confidence 99999999999874
No 52
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.72 E-value=3.8e-18 Score=184.74 Aligned_cols=213 Identities=19% Similarity=0.168 Sum_probs=169.7
Q ss_pred cCCCCcccccccCceehhhhccccCCCCccCCCCCCCCCCCCCccccccccccccccCCCCCCccHHHHHHHHHHHHcCC
Q 010138 129 MDISWPTEVRHVSHVTFDRFNGFLGLPTELEPEVPRKAPSASVSVFGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGG 208 (517)
Q Consensus 129 ~~igwpt~vr~ls~it~~rf~~~lGlP~~~~~~~pr~~p~~~~~vFGv~L~~L~~~~~~~g~~VP~IL~~~i~~Lie~~G 208 (517)
..+.|+-+++...+++- + +.. ....++..+||.||..+ |... .+|.-+..+.-.+ -..|
T Consensus 53 ~~~~w~f~~~~~~~l~~--~------~~a-------~~~~~~~~Lfg~pl~ni-c~~~----~lp~p~~d~l~~l-c~kg 111 (741)
T KOG4724|consen 53 QKGAWSFKLKEKLRLEK--V------WIA-------SSNTADSFLFGWPLTNI-CVHF----RLPEPDEDFLLLL-CCKG 111 (741)
T ss_pred hhccchhhhccccchhh--c------cCC-------cCCCCCccccCccchhh-cccC----CCCChHHHHHHHH-hhcC
Confidence 45678888887655542 1 111 11223678999999987 4332 1777777776444 6799
Q ss_pred CccCCceeccCChhHHHHHHHHHhcCCCC--CCCchhhhHHHHHHHHHhCCCCCCCCCChHHHhhcc-------cHHHHH
Q 010138 209 LKAEGIFRINAENSQEEYVRDQLNKGVVP--HGIDVHCLAGLIKAWLRELPTGVLDSLTPDQVMHCN-------TEEDCT 279 (517)
Q Consensus 209 L~~EGIFRisGs~~~I~~Lr~~Ld~g~~~--~~~D~h~VAsLLK~fLReLPePLlp~~ly~~~i~~~-------~~e~l~ 279 (517)
..++||||..++...++.|++.|++|... +...+|++|+++|.|||.+|.-+|...+|+.|+... .+++++
T Consensus 112 p~t~giFr~~anek~~relKe~lnsgv~v~l~~~~i~v~a~v~kdflr~ip~~~lSsdl~~hw~~~~~~~~~e~~i~~i~ 191 (741)
T KOG4724|consen 112 PCTRGIFRTIANEKNVRELKETLNSGVDVGLKSGEIVVDAAVDKDFLRTIPQLTLSSDLNSHWQLQGPENVYEAIISEIE 191 (741)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcccccccccccceEEeehhhhchhhhchhhhhccccHHHHhhccccccHHHHHHHHH
Confidence 99999999999999999999999999764 578999999999999999999999999999998762 345688
Q ss_pred HHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhhhHHhhhcccCCCCChhHH-H--HHHHHHHHHHHHHHHHHHHhh
Q 010138 280 QLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAPNMTQMADPLTA-L--IHAVQVMNFLKTLILKILRER 356 (517)
Q Consensus 280 ~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLAiVFaPnLlr~~d~~~~-l--~~~~~~~~~v~~LIen~l~~f 356 (517)
++..+||..|..+|++|...| .|.+++.+|.|+..|||+|++|++++....... + .-..++--++.+||+|++++|
T Consensus 192 r~~d~Lpr~n~~lL~~l~~vl-~i~~~S~~n~m~~~nla~cv~p~~l~~~~~~s~e~~k~ln~kv~~l~~flI~nclrif 270 (741)
T KOG4724|consen 192 RQGDRLPRSNKQLLDTLPIVL-CILILSTINSMSGPNLAQCVNPIKLKVLTRTSSEFGKGLNGKVPPLPIFLIVNCLRIF 270 (741)
T ss_pred HHHhhCCchHHHHHHHhHHHH-HHHHhhhhccccCccHHHHhcchhcccccccChhhhccccCCCCCceeeehhhhHHhh
Confidence 899999999999999999999 899999999999999999999999987542111 1 112344566889999999999
Q ss_pred HHHHhhh
Q 010138 357 EEAAAKA 363 (517)
Q Consensus 357 ee~~~~a 363 (517)
++.+..-
T Consensus 271 Ge~i~~~ 277 (741)
T KOG4724|consen 271 GEDIEGI 277 (741)
T ss_pred cccccce
Confidence 9987643
No 53
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=99.64 E-value=3e-16 Score=174.73 Aligned_cols=151 Identities=17% Similarity=0.299 Sum_probs=132.8
Q ss_pred CccccccccccccccCCCCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcC-CC---CCCCchhhhH
Q 010138 171 VSVFGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKG-VV---PHGIDVHCLA 246 (517)
Q Consensus 171 ~~vFGv~L~~L~~~~~~~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g-~~---~~~~D~h~VA 246 (517)
...||++|...+. ....||..+.+|++|+ +..|+.+|||||++|+....+.++.+|... .+ .-+..+|++|
T Consensus 915 s~~~~~~l~~~~t----~~k~ip~~~ekc~sfi-edtg~~te~lyrv~gnkT~~eelrkqf~n~~~~dl~s~d~~v~~va 989 (1100)
T KOG4271|consen 915 SNYFLTPLQDAVT----SEKPIPIFLEKCKSFI-EDTGLSTEGLYRVSGNKTDLEELRKQFLNDHNFDLSSMDTTVNVVA 989 (1100)
T ss_pred hhccCCccccccc----CCcccchHHHHHHHHH-HhccchhhhheecCCCCccHHHHHHHHHhhcccccccccccccccc
Confidence 4689999988653 2467999999999997 899999999999999999999999999762 22 2356799999
Q ss_pred HHHHHHHHhCCCCCCCCCChHHHhhcccH-------HHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhhhHH
Q 010138 247 GLIKAWLRELPTGVLDSLTPDQVMHCNTE-------EDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAM 319 (517)
Q Consensus 247 sLLK~fLReLPePLlp~~ly~~~i~~~~~-------e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLAi 319 (517)
+.+|.||..||+||+++.++..+.++..+ ..++..+..||+.|+.+|+|++.||.+|+....+|.|+..||.|
T Consensus 990 gAlksffa~Lpeplipys~h~~~~e~~kI~D~~rklhglr~~~a~l~~~n~dvfry~ithL~kvs~~~k~~l~t~~~~~i 1069 (1100)
T KOG4271|consen 990 GALKSFFACLPEPLIPYSYHPRLKEAMKISDRGRKLHGLREASAKLHPSNQDVFRYVITHLNKVSCSPKTNLMTNNNLSI 1069 (1100)
T ss_pred CcchhhhhhCCCcccCccCCcchhhhhhcccchhhccchhhHhhhcCchHHHHHHHHHHHHhhhcccccccccccccccc
Confidence 99999999999999999988887776433 45788999999999999999999999999999999999999999
Q ss_pred hhhcccC
Q 010138 320 VFAPNMT 326 (517)
Q Consensus 320 VFaPnLl 326 (517)
||++.|+
T Consensus 1070 ~~~~~~~ 1076 (1100)
T KOG4271|consen 1070 CFPTLLM 1076 (1100)
T ss_pred cccchHH
Confidence 9999885
No 54
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins. Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.63 E-value=4.5e-15 Score=143.83 Aligned_cols=138 Identities=15% Similarity=0.164 Sum_probs=120.3
Q ss_pred cHHHHHHHHHHHHcCCCccCCc---eeccCChhHHHHH-HHHHhcCC---C--------CCCCchhhhHHHHHHHHHhCC
Q 010138 193 PTILLMMQRHLYSEGGLKAEGI---FRINAENSQEEYV-RDQLNKGV---V--------PHGIDVHCLAGLIKAWLRELP 257 (517)
Q Consensus 193 P~IL~~~i~~Lie~~GL~~EGI---FRisGs~~~I~~L-r~~Ld~g~---~--------~~~~D~h~VAsLLK~fLReLP 257 (517)
=.+|..|.+.| +.+|+++++| ||..++...++.+ +..++.+. . ....|+|+|+++||.|||.||
T Consensus 7 ~~l~~~~t~eL-k~rg~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~e~~~~d~~~l~~~LK~~~~rLP 85 (198)
T cd04401 7 KGLIHNITEEL-KSRGLDTPLLFLPFRPELSPDKVRSLINSFFPSQNGQLQGTAELLDELRYADPHTLILVLKWIWSRLP 85 (198)
T ss_pred HHHHHHHHHHH-HhcccCcchhhcccCCCCCHHHHHHHHHHHCCCcCCcccchHHHHHHHhccChHHHHHHHHHHHHHCC
Confidence 34788888888 7899999999 9999999998877 55666542 1 235899999999999999999
Q ss_pred CCCCCC-CChHHHhhccc-----HHHHHHHHHhc--ChhHHHHHHHHHHHhhHhhhccccCCCChhhhHHhhhcccCCCC
Q 010138 258 TGVLDS-LTPDQVMHCNT-----EEDCTQLVKLL--PPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAPNMTQMA 329 (517)
Q Consensus 258 ePLlp~-~ly~~~i~~~~-----~e~l~~Ll~~L--P~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLAiVFaPnLlr~~ 329 (517)
.++|+. +.|..|....+ .++...++..+ |+.|+.++..++.+|..|+.|+..|+|+..||+.+|||.+|..+
T Consensus 86 ~~~v~~~~~Y~~F~~~E~~~~~p~~aF~~~l~~~~~~~a~~~il~~ffdlL~~Iaa~s~~N~ms~~kLs~~fg~waF~~~ 165 (198)
T cd04401 86 GSKVIWWEVYEEFKARERRSNYPADAFLDLLPQCLSSPAHASILYDFFDLLSSIAAHSSVNGMSGRKLSKMAGPWAFGKP 165 (198)
T ss_pred CCccCCHHHHHHHHHHHHhcCCcHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHhcCccCCcHhHHHHHhhHHHcCCC
Confidence 999999 99999988643 35788889887 88999999999999999999999999999999999999999876
Q ss_pred Ch
Q 010138 330 DP 331 (517)
Q Consensus 330 d~ 331 (517)
+.
T Consensus 166 ~~ 167 (198)
T cd04401 166 TG 167 (198)
T ss_pred Cc
Confidence 64
No 55
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.47 E-value=2.1e-13 Score=134.25 Aligned_cols=137 Identities=15% Similarity=0.036 Sum_probs=110.4
Q ss_pred CCceeccCChhHHHHHHHHHhcCCCC---C-CCchh-----------hhHHHHHHHHHhCCCCCCCCCChHHHhhcc---
Q 010138 212 EGIFRINAENSQEEYVRDQLNKGVVP---H-GIDVH-----------CLAGLIKAWLRELPTGVLDSLTPDQVMHCN--- 273 (517)
Q Consensus 212 EGIFRisGs~~~I~~Lr~~Ld~g~~~---~-~~D~h-----------~VAsLLK~fLReLPePLlp~~ly~~~i~~~--- 273 (517)
.|+||.++...-+...++.++..... + ....+ +||.++|+||++||+||+|..+|+.+..+.
T Consensus 60 v~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~y~~~~~~~~~e~dv~~ti~qyf~~LpEPLLT~~l~~~~~~I~~ll 139 (235)
T cd04405 60 VKLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPLYSQHDMLSGFKRLLFKTIAKYYGQLKEPLLTFHLFDIFVGILELL 139 (235)
T ss_pred hcccccccCcHHHHHHHHHHHhCCcccccccccccccccccccchHHHHHHHHHHHHhcCCCccCcchHHHHHHHHHHHh
Confidence 79999998888888888888764221 1 11112 799999999999999999999999776552
Q ss_pred -------cHHHHHHHHHhcChhHHHHHHHHHHHhhHhhhcc-------ccCCCChhhhHHhhhcccCCCCChhHHHHHHH
Q 010138 274 -------TEEDCTQLVKLLPPSEAALLDWAINLMADVVQHE-------QYNKMNARNIAMVFAPNMTQMADPLTALIHAV 339 (517)
Q Consensus 274 -------~~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s-------~~NKMt~~NLAiVFaPnLlr~~d~~~~l~~~~ 339 (517)
..++++.++..||++||..|+.|+.||++|+++. ..|+| |++..|+|+++++++-. ..
T Consensus 140 ~~~~~e~aleAlQl~~lLLP~enRe~Lq~LL~fl~~va~~~~~~L~~~~~nR~---~v~~~Fs~~ii~~~~l~-----~~ 211 (235)
T cd04405 140 GNGKEEVALEALQLCLLLLPPASRRELRRLLRFMARAAKNDMPRLHKEIENRM---LVKQTFSRAILCSKDLD-----EG 211 (235)
T ss_pred cCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCccccccccchHH---HHHHHhhhHhcCccccC-----HH
Confidence 2356788889999999999999999999999994 25666 99999999999998532 34
Q ss_pred HHHHHHHHHHHHHHHhh
Q 010138 340 QVMNFLKTLILKILRER 356 (517)
Q Consensus 340 ~~~~~v~~LIen~l~~f 356 (517)
+..+++.+||+|+-++|
T Consensus 212 ~~~~LV~Fmmd~~~~if 228 (235)
T cd04405 212 LADLLVLFLMDHHQDIF 228 (235)
T ss_pred HHHHHHHHHHHcchhhh
Confidence 45688889999887776
No 56
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=99.15 E-value=1.4e-10 Score=121.44 Aligned_cols=137 Identities=23% Similarity=0.380 Sum_probs=114.9
Q ss_pred CCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCC--------------------------------
Q 010138 188 RGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGV-------------------------------- 235 (517)
Q Consensus 188 ~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~-------------------------------- 235 (517)
.+...|-.....+.+. +.+|+-++|++|..+.+++.++++.+-+.|.
T Consensus 67 d~~~~~~~f~~~~~~~-e~~~~fte~~s~~~~eksr~~e~k~k~kk~~k~~~aD~~~~~~~~k~~~~~i~Epvvpi~~p~ 145 (514)
T KOG4370|consen 67 DGIPLPSFFRYAIDFV-EENGLFTEGISRLSPEKSRLDELKRKAKKGEKMIFADAHDAAGLIKRFLRQIPEPVVPIEFPS 145 (514)
T ss_pred CCCcCcccchhhhhhh-hccccccccccccCcccchhHHHHHhhhhhhhhhHHHHHHHHhHHHHhhhccCCccccccchH
Confidence 3567787888887775 7899999999999998877766665433221
Q ss_pred -----------CCCCCchhhhHHHHHHHHHhCCCCCCCCCChHHHhhc-------ccHHHHHHHHHhcChhHHHHHHHHH
Q 010138 236 -----------VPHGIDVHCLAGLIKAWLRELPTGVLDSLTPDQVMHC-------NTEEDCTQLVKLLPPSEAALLDWAI 297 (517)
Q Consensus 236 -----------~~~~~D~h~VAsLLK~fLReLPePLlp~~ly~~~i~~-------~~~e~l~~Ll~~LP~~Nr~lL~~Li 297 (517)
..+.+.+.+||++||.|||+||++|++.++...|..+ ....+++.++..||..||.++.||+
T Consensus 146 V~r~Ci~e~~~~~~~l~p~tvcSllk~~lr~lpenlLT~el~~rFeev~~h~~~t~~q~efq~llk~Lp~cNyll~swl~ 225 (514)
T KOG4370|consen 146 VARSCIREGLATTTQLTPKTVCSLLKSRLRRLPENLLTVELKTRFEEVFLHAQHTMGQNEFQFLLKILPKCNYLLYSWLN 225 (514)
T ss_pred HHHHHhhccccchhhcCchhHHHHHHHHHhhcchhhHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccchHHHHHHH
Confidence 0135788999999999999999999999887777654 3456789999999999999999999
Q ss_pred HHhhHhhhccccCCCChhhhHHhhhccc
Q 010138 298 NLMADVVQHEQYNKMNARNIAMVFAPNM 325 (517)
Q Consensus 298 ~fL~~V~~~s~~NKMt~~NLAiVFaPnL 325 (517)
-|+-+|.+..-.|||+..||+|+..|++
T Consensus 226 lH~d~vi~~e~~~Kln~q~i~i~lspt~ 253 (514)
T KOG4370|consen 226 LHKDKVIEEEYCLKLNKQQIFINLSPTE 253 (514)
T ss_pred HHHHHHHHHHHHhhcchhheeeecchHH
Confidence 9999999999999999999999999986
No 57
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]
Probab=99.02 E-value=4.4e-10 Score=125.50 Aligned_cols=139 Identities=23% Similarity=0.343 Sum_probs=122.0
Q ss_pred CCCCccHHHHHHHHHHHHcCCCccCCcee-ccCChhHHHHHHHHHhcCCCC----CCCchhhhHHHHHHHHHhCCCC-CC
Q 010138 188 RGNSVPTILLMMQRHLYSEGGLKAEGIFR-INAENSQEEYVRDQLNKGVVP----HGIDVHCLAGLIKAWLRELPTG-VL 261 (517)
Q Consensus 188 ~g~~VP~IL~~~i~~Lie~~GL~~EGIFR-isGs~~~I~~Lr~~Ld~g~~~----~~~D~h~VAsLLK~fLReLPeP-Ll 261 (517)
.+..||.++..|+.++ +.+|+..+|||| +++....+..++.++..|... .+.+... |.+||.|+|.|.+| .|
T Consensus 214 ~~q~iP~i~d~~~~l~-~~~~l~~~~i~~k~s~~e~~v~~~~~k~~~g~~~~~~~~~~~~dS-a~vlk~~~~~le~P~~f 291 (640)
T KOG3565|consen 214 YFQFIPLIVDSLQRLE-ERRGLRLEGILRKVSGSESSVNDIISKCERGMRLAVGLNDPDLDS-AGVLKLYFRGLEEPADF 291 (640)
T ss_pred CcccccHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhccCcchhH-HHHHHHHHccCCCcccC
Confidence 3668999999999876 899999999999 899999999999999888321 3455555 99999999999999 99
Q ss_pred CCCChHHHhhcccH-------HHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhhhHHhhhcccCCC
Q 010138 262 DSLTPDQVMHCNTE-------EDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAPNMTQM 328 (517)
Q Consensus 262 p~~ly~~~i~~~~~-------e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLAiVFaPnLlr~ 328 (517)
+++.+.+++.+... ..+..++..||..+..++.+|..|+.+.++.++.|.|++.|+++||||.++-.
T Consensus 292 ~~e~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~l~~f~~~l~~~~~~~~~~~~n~~~~~g~~~~~~ 365 (640)
T KOG3565|consen 292 PFEDFGQPHDCAARDNLLSRALHVRKLLKSLPNQVGIELRKLFAFLSKLSQLSDENMMDPYNLAICFGPTLEPV 365 (640)
T ss_pred ccccccchhhhhhhcCchhhhhhhhhhhhccccHHHHHHHHHHHhhhhhhhhccccccCccccccccccccccC
Confidence 99999999887432 34677889999999999999999999999999999999999999999999643
No 58
>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation [].
Probab=98.32 E-value=8.6e-06 Score=87.50 Aligned_cols=164 Identities=18% Similarity=0.222 Sum_probs=119.7
Q ss_pred ccHHHHHHHHHHHHcCCCccCCce---eccCChhHHHHHHH-HHhcCCC------------CCCCchhhhHHHHHHHHHh
Q 010138 192 VPTILLMMQRHLYSEGGLKAEGIF---RINAENSQEEYVRD-QLNKGVV------------PHGIDVHCLAGLIKAWLRE 255 (517)
Q Consensus 192 VP~IL~~~i~~Lie~~GL~~EGIF---RisGs~~~I~~Lr~-~Ld~g~~------------~~~~D~h~VAsLLK~fLRe 255 (517)
|=.+|+.|.+.| +.+|+++++|| |-.-+...++.+.. .+..+.. ....++|+++++||..+..
T Consensus 8 v~~li~~~t~el-K~rgldtp~lllpfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~~el~~~~~~~L~~~LKw~w~R 86 (420)
T PF08101_consen 8 VKDLIHACTEEL-KSRGLDTPFLLLPFRPDSDPSALRRFIRSFFPQGNGSPVLDGEALIQELRFTSPHTLISVLKWIWSR 86 (420)
T ss_pred HHHHHHHHHHHH-HhccCCCchhccCCCCCCCHHHHHHHHHHhCCCccCcccccHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 345778888777 78999999998 55555556655444 3333321 1368999999999999999
Q ss_pred CCCCCCCCCChHHHhhcccH-----HHHHHHH-HhcC-hhHHHHHHHHHHHhhHhhhccccCCCChhhhHHhhhcccCCC
Q 010138 256 LPTGVLDSLTPDQVMHCNTE-----EDCTQLV-KLLP-PSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAPNMTQM 328 (517)
Q Consensus 256 LPePLlp~~ly~~~i~~~~~-----e~l~~Ll-~~LP-~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLAiVFaPnLlr~ 328 (517)
||..+|+.+.|..|....+. ++...++ ..|| +.+..++.-++.+|..|+.|+..|+|+..-|+-.+|+=+|..
T Consensus 87 Lp~gvVgW~~Y~~Fk~~E~~~~yp~~AF~~~lp~~l~s~a~~~Iv~dFfdLL~sIaa~s~~NglsgrKlsrm~g~WaF~~ 166 (420)
T PF08101_consen 87 LPGGVVGWDSYEEFKRREREAGYPRDAFLTFLPQCLPSPAHASIVYDFFDLLSSIAAHSKKNGLSGRKLSRMAGIWAFGH 166 (420)
T ss_pred cCCCccccHHHHHHHHHHhhcCCChHHHHHhccccCCChhHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHCCC
Confidence 99999999999999876544 4566666 4664 566789999999999999999999999999999999998865
Q ss_pred CChh-----HHHHH----HHHHHHHHHHHHHHHHHhh
Q 010138 329 ADPL-----TALIH----AVQVMNFLKTLILKILRER 356 (517)
Q Consensus 329 ~d~~-----~~l~~----~~~~~~~v~~LIen~l~~f 356 (517)
.+.. ..+.. =...-+.+.-|+.-+++.+
T Consensus 167 ~~~~~~~~~~~f~~gy~~W~~aadA~~HLflAyLRs~ 203 (420)
T PF08101_consen 167 PDFGKDSGFNSFEEGYKAWIRAADALEHLFLAYLRSL 203 (420)
T ss_pred CCcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5432 22222 1223344455555566553
No 59
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=97.56 E-value=6.9e-05 Score=83.05 Aligned_cols=155 Identities=16% Similarity=0.199 Sum_probs=109.6
Q ss_pred CccccccccccccccCCCCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHH-----HHHHHhcCC--CCCCCchh
Q 010138 171 VSVFGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEY-----VRDQLNKGV--VPHGIDVH 243 (517)
Q Consensus 171 ~~vFGv~L~~L~~~~~~~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~-----Lr~~Ld~g~--~~~~~D~h 243 (517)
...||+||+.. |. +....+=|.++ +--|++..+..++++||..-...-+.+ ..+....|. .++...+|
T Consensus 414 kv~fdaPlS~~-c~-d~gk~prPlq~---~~tll~kknp~tpn~fprt~~~Alv~ks~s~~s~dd~s~gr~vdv~sspv~ 488 (741)
T KOG4724|consen 414 KVPFDAPLSVF-CA-DQGKTPRPLQI---QSTLLKKKNPATPNVFPRTNDEALVLKAFSSSSLDDSSDGRPVDVPSSPVH 488 (741)
T ss_pred hCcCCCchhhc-cc-ccCCCCCChhh---hhHHHHhcCCCCCccCCCccchhhhhhcccccchhhhccCCcccCCCCCch
Confidence 45799999875 43 22222334333 223457889999999998433332221 112222243 24567999
Q ss_pred hhHHHHHHHHHhCCCCCCCCCChHHHhhcc---cH----HHHHH--------HHHhcChhHHHHHHHHHHHhhHhhhccc
Q 010138 244 CLAGLIKAWLRELPTGVLDSLTPDQVMHCN---TE----EDCTQ--------LVKLLPPSEAALLDWAINLMADVVQHEQ 308 (517)
Q Consensus 244 ~VAsLLK~fLReLPePLlp~~ly~~~i~~~---~~----e~l~~--------Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~ 308 (517)
.+|+++|.|+|++|..++..+.+.+++++. .+ ++++. .....|..+..+....+.-...+..+++
T Consensus 489 taasv~KdfnRKtpRgi~sr~ihke~~ea~~lq~EedrtEaLk~~~gks~~fv~~~~Prg~s~~~shsvf~~~i~S~nse 568 (741)
T KOG4724|consen 489 TAASVHKDFNRKTPRGIPSREIHKESMEATFLQHEEDRTEALKAGSGKSQDFVRDHVPRGGSNVRKHSVFAGRIVSENSE 568 (741)
T ss_pred HHHHHHHHhhhhcCCCccchHHHHHhhhhhhccchHHHHHHHHhhcCCcccccccCCCCCcccccccccccceecccccc
Confidence 999999999999999999999999998873 22 34444 4556788888788877777778889999
Q ss_pred cCCCChhhhHHhhhcccCCCCC
Q 010138 309 YNKMNARNIAMVFAPNMTQMAD 330 (517)
Q Consensus 309 ~NKMt~~NLAiVFaPnLlr~~d 330 (517)
.+.|+..|++.|..|+++...+
T Consensus 569 ~~s~dsSn~~~csrpn~~tvd~ 590 (741)
T KOG4724|consen 569 ETSNDSSNPGFCSRPNALTVDD 590 (741)
T ss_pred cccccccccCCCCCccccchhh
Confidence 9999999999999999976544
No 60
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=95.56 E-value=0.026 Score=66.79 Aligned_cols=157 Identities=19% Similarity=0.253 Sum_probs=119.3
Q ss_pred cccccccccccccCCCCCCccHHHHH-HHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCC-C-------CC-CCch
Q 010138 173 VFGVSAKSMQCSYDDRGNSVPTILLM-MQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGV-V-------PH-GIDV 242 (517)
Q Consensus 173 vFGv~L~~L~~~~~~~g~~VP~IL~~-~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~-~-------~~-~~D~ 242 (517)
++|+++..+... .......|.++.. +... ....|....++||..+....++..+..++... . .. ..++
T Consensus 462 ~~~~~~~~~~~~-~~~~~~~~~~vs~~~~~e-~~~~g~~s~~l~r~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~ 539 (918)
T KOG1453|consen 462 ILGTDLTTLSVN-KDLNSNRPLSVSRSLERE-SRSPGALSRGLFRVSGFSSTIESKKNAFDRKGQSKKDASPNVHKSKEV 539 (918)
T ss_pred ccccCccccccc-hhhhcccCcccccchhcc-cCCCCcccccccccCCccccccchhhccCccccchhccCCCccccccc
Confidence 899998876221 2234457777777 4444 36789999999999999999999999888633 1 11 3455
Q ss_pred hhhHHHHHHHHHhC--CCCCCCCCChHHHhhcc-----------------------cH-------HHHHHHHH----hcC
Q 010138 243 HCLAGLIKAWLREL--PTGVLDSLTPDQVMHCN-----------------------TE-------EDCTQLVK----LLP 286 (517)
Q Consensus 243 h~VAsLLK~fLReL--PePLlp~~ly~~~i~~~-----------------------~~-------e~l~~Ll~----~LP 286 (517)
..+++.++.|+|.+ |.+......|..++... .. ..+..+.. .+|
T Consensus 540 ~~~sg~~~~~~r~~~~P~~c~~c~~~~~~~~~~c~~c~~~chkkc~~~~~~~~~~~~l~~~~~fG~~l~~~~~~e~~~vP 619 (918)
T KOG1453|consen 540 NLHSGALKHYLRSLRKPAPCRTCETYSWFMELECELCRLVCHKKCLEALKSLCGHERLPGRPLFGVSLSELARYEPSTVP 619 (918)
T ss_pred hhccCcchhhhhcccCCcccccccccchhhhcccceeeeeccccchhhccccCccccccccccccHHHHHhhccCCCCCC
Confidence 56677999999999 99988888888877321 01 34555666 899
Q ss_pred hhHHHHHHHHHHHhhHhhhccccC-CCCh-hhhHHhhhc----ccCCCCCh
Q 010138 287 PSEAALLDWAINLMADVVQHEQYN-KMNA-RNIAMVFAP----NMTQMADP 331 (517)
Q Consensus 287 ~~Nr~lL~~Li~fL~~V~~~s~~N-KMt~-~NLAiVFaP----nLlr~~d~ 331 (517)
.....+|.++..|+.+|.....+| .|+. +||..+|++ +++...+.
T Consensus 620 ~i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~di 670 (918)
T KOG1453|consen 620 FILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTPDI 670 (918)
T ss_pred HHHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCCCh
Confidence 999999999999999999988888 7888 999999999 55655553
No 61
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]
Probab=93.86 E-value=0.015 Score=64.34 Aligned_cols=58 Identities=26% Similarity=0.324 Sum_probs=45.7
Q ss_pred HHHhhHhhhccccCCCChhhhHHhhhcccCCCCChhH---------HHHHHHHHHHHHHHHHHHHHH
Q 010138 297 INLMADVVQHEQYNKMNARNIAMVFAPNMTQMADPLT---------ALIHAVQVMNFLKTLILKILR 354 (517)
Q Consensus 297 i~fL~~V~~~s~~NKMt~~NLAiVFaPnLlr~~d~~~---------~l~~~~~~~~~v~~LIen~l~ 354 (517)
+.||..|+.+..+..|.+.|||+||||||+|.+.... +.-.+++++.++...|.+++.
T Consensus 1 ~rHls~va~~~s~tnmhA~Nla~vwapnllrskeies~lcs~~~GdaAf~avq~qsvV~EfilnhvD 67 (670)
T KOG1449|consen 1 HRHLSSVALGPSRTNMHAINLAEVWAPNLLRSKEIESSLCSHLWGDAAFSAVQAQSVVSEFILNHVD 67 (670)
T ss_pred CcchhhhhccchhhHHHHhhHHHhhhhhhHHHHHHHHhhhccccccHHHHHHHhhhhhhhhcccccc
Confidence 3689999999999999999999999999999765222 223467778888888877643
No 62
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=86.00 E-value=0.83 Score=53.52 Aligned_cols=153 Identities=18% Similarity=0.071 Sum_probs=100.9
Q ss_pred CCccccccccccccccCCCCCCccHHHHHHHHHHHHcCCCccCC---ceeccC-ChhHHHHHHHHHh-cCCC----CCCC
Q 010138 170 SVSVFGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEG---IFRINA-ENSQEEYVRDQLN-KGVV----PHGI 240 (517)
Q Consensus 170 ~~~vFGv~L~~L~~~~~~~g~~VP~IL~~~i~~Lie~~GL~~EG---IFRisG-s~~~I~~Lr~~Ld-~g~~----~~~~ 240 (517)
...++|.+..-.+..+ ..-|.+..+-+.+| +..|+..|| |-|.++ ....|+.=...|+ .|.. .+.+
T Consensus 353 lss~~~rps~g~le~~----d~sp~~~~knL~~l-~~~Gl~~E~~n~I~~qsa~D~~~id~kiyE~s~dgkt~~~v~~~~ 427 (1100)
T KOG4271|consen 353 LSSVLGRPSLGALENS----DGSPNIDEKNLVIL-GKDGLAGEGANEIRRQSADDVYVIDGKIYELSIDGKTRLPVNSFQ 427 (1100)
T ss_pred hhhhhcCcchhhhhhh----cCCcccchhhhhhh-hhcccchhhhHHHHHhcccchhhhhhhhhhcccccccccchhhhc
Confidence 3556777543222222 23577887777665 899999999 989888 4445543333343 4431 2445
Q ss_pred chh--hhHHHHH--HHHHhCCCCCCCCCChHHHhhc---------ccHHH-HHHHHHh--cChhHHH----HHHHHHHHh
Q 010138 241 DVH--CLAGLIK--AWLRELPTGVLDSLTPDQVMHC---------NTEED-CTQLVKL--LPPSEAA----LLDWAINLM 300 (517)
Q Consensus 241 D~h--~VAsLLK--~fLReLPePLlp~~ly~~~i~~---------~~~e~-l~~Ll~~--LP~~Nr~----lL~~Li~fL 300 (517)
+|| .|...++ .-||.++..+.+...+..+..+ .++.. ...++.. -|.+|+. ++..|+..+
T Consensus 428 ~ph~s~v~e~Ie~~~~lr~~~~~~~~~~~C~~ld~a~gY~~~~Ne~riss~~~aices~~~p~pnnk~~~d~~LRivm~m 507 (1100)
T KOG4271|consen 428 QPHLSYVGESIEKSHSLRQQGQQIAPKLQCVFLDEASGYGRDINEKRISSVLKAICESRNSPEPNNKDLADLDLRIVMCM 507 (1100)
T ss_pred CcchhHHHhhhhhhhhhhhcccccCCccccccccccccccccccHHHHHHHHHHHHhhcCCCccccchhHHHHHHHHHHH
Confidence 888 4677777 7778888888877666555444 12222 2334444 6877766 666677777
Q ss_pred hHhhhccccCCCChh-hhHHhhhc-ccCC
Q 010138 301 ADVVQHEQYNKMNAR-NIAMVFAP-NMTQ 327 (517)
Q Consensus 301 ~~V~~~s~~NKMt~~-NLAiVFaP-nLlr 327 (517)
.-+..++..|.|++. ..+.|.+| .|++
T Consensus 508 ~~g~~~s~~ni~n~~~~s~aCkS~~llL~ 536 (1100)
T KOG4271|consen 508 MCGDPFSADNILNPVLASAACKSPHLLLR 536 (1100)
T ss_pred hcCCchhhhhhcChhhHHHHhcChHHHHh
Confidence 888889999999999 99999999 4655
No 63
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]
Probab=84.88 E-value=0.2 Score=55.84 Aligned_cols=143 Identities=11% Similarity=0.128 Sum_probs=88.3
Q ss_pred CccccccccccccccCCCCCCccH-HHHHHHHHHHHc---C-C-CccCCceeccCChhHHHHHHHHHhcCCCCCCCchhh
Q 010138 171 VSVFGVSAKSMQCSYDDRGNSVPT-ILLMMQRHLYSE---G-G-LKAEGIFRINAENSQEEYVRDQLNKGVVPHGIDVHC 244 (517)
Q Consensus 171 ~~vFGv~L~~L~~~~~~~g~~VP~-IL~~~i~~Lie~---~-G-L~~EGIFRisGs~~~I~~Lr~~Ld~g~~~~~~D~h~ 244 (517)
+..||.-|..+. -..|..||. ++.+||..+ +. + + +...|.|++..+..... +...+.-.-|+..
T Consensus 207 ~~~~gl~ltr~~---~~~G~~lpas~~g~~C~s~-~~~~q~~ei~~~~g~l~a~~D~gae~------d~~af~~p~di~v 276 (670)
T KOG1449|consen 207 NLNCGLVLTRME---VGLGRGLPASEWGRGCVSH-HAVTQHREILDGNGVLSAVEDEGAEV------DGEAFRWPSDIVV 276 (670)
T ss_pred Cccccceeccee---eccccccchhhhccchhcc-ccchhccCCcccCcceeccccccccc------cccccCCccceee
Confidence 345555554432 234678998 777777644 33 1 1 22345555543221110 0011223578899
Q ss_pred hHHHHHHHHHhCCCCCCCCCChHHHhh-cccHHHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhhhHHhhhc
Q 010138 245 LAGLIKAWLRELPTGVLDSLTPDQVMH-CNTEEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAP 323 (517)
Q Consensus 245 VAsLLK~fLReLPePLlp~~ly~~~i~-~~~~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLAiVFaP 323 (517)
+..+++.|++.+|.|+.. ..|+.==. ....+...-.+..+++.|+.+-.+|..||...+.-. .+++|++.|
T Consensus 277 ~S~d~dp~s~Q~~pp~~~-~~~~k~Ds~s~sv~~~~~~~~~~se~~~r~a~~lse~ft~~~~~~-------~s~~I~~~~ 348 (670)
T KOG1449|consen 277 ESWDMDPYSRQLPPPYPK-EAFEKEDSLSESVESLRFSLETMSEAHYRTAKFLSEHFTRLCKSK-------KSLAIVWSP 348 (670)
T ss_pred eccccChhhhhcCCCCcc-cccccccCcccceeeeccccccCCcccchHhhhhchhhhhhcccc-------ccceeecCC
Confidence 999999999999999544 22211000 011122334456789999999999999998887633 799999999
Q ss_pred ccCCCCCh
Q 010138 324 NMTQMADP 331 (517)
Q Consensus 324 nLlr~~d~ 331 (517)
+++|++..
T Consensus 349 ~~~r~ppt 356 (670)
T KOG1449|consen 349 NLFRPPPT 356 (670)
T ss_pred CCCCCCCC
Confidence 99998764
No 64
>smart00285 PBD P21-Rho-binding domain. Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB).
Probab=65.98 E-value=3.3 Score=29.73 Aligned_cols=28 Identities=54% Similarity=0.883 Sum_probs=22.9
Q ss_pred CCCcccccccCceehhh-hccccCCCCcc
Q 010138 131 ISWPTEVRHVSHVTFDR-FNGFLGLPTEL 158 (517)
Q Consensus 131 igwpt~vr~ls~it~~r-f~~~lGlP~~~ 158 (517)
|+.|+..+|+.|+.|+. ..++.|+|.+-
T Consensus 1 IS~P~nf~H~~HVg~d~~~~~f~glp~ew 29 (36)
T smart00285 1 ISTPTDFKHIAHVGFDGQTGEFTGLPTEW 29 (36)
T ss_pred CCCCCCCcEEEEeeECCCCCccCCCCHHH
Confidence 68899999999999998 55678887543
No 65
>cd00132 CRIB PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway. CRIB-containing effector proteins are functionally diverse and include serine/threonine kinases, tyrosine kinases, actin-binding proteins, and adapter molecules.
Probab=60.35 E-value=5.5 Score=29.55 Aligned_cols=20 Identities=50% Similarity=0.871 Sum_probs=18.1
Q ss_pred cCCCCcccccccCceehhhh
Q 010138 129 MDISWPTEVRHVSHVTFDRF 148 (517)
Q Consensus 129 ~~igwpt~vr~ls~it~~rf 148 (517)
++|++|+..+|++|+.++..
T Consensus 1 ~~IS~Ptnf~H~~HvG~d~~ 20 (42)
T cd00132 1 MEISTPTDFKHISHVGWDGV 20 (42)
T ss_pred CcccCCCCcCcccccCCCCC
Confidence 57999999999999999876
No 66
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=52.96 E-value=4.5 Score=35.55 Aligned_cols=8 Identities=50% Similarity=0.592 Sum_probs=2.8
Q ss_pred HHHHHhhc
Q 010138 108 LVAALRKS 115 (517)
Q Consensus 108 ~~~a~~ks 115 (517)
+|..+||+
T Consensus 80 ~vhv~rk~ 87 (101)
T PF09026_consen 80 LVHVTRKN 87 (101)
T ss_dssp HHHHHHH-
T ss_pred eEEeeeec
Confidence 33334443
No 67
>cd01093 CRIB_PAK_like PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway. This subgroup of CRIB/PBD-domains is found N-terminal of Serine/Threonine kinase domains in PAK and PAK-like proteins.
Probab=48.07 E-value=8.4 Score=29.11 Aligned_cols=28 Identities=50% Similarity=0.784 Sum_probs=22.5
Q ss_pred CCCCcccccccCceehhhh-ccccCCCCc
Q 010138 130 DISWPTEVRHVSHVTFDRF-NGFLGLPTE 157 (517)
Q Consensus 130 ~igwpt~vr~ls~it~~rf-~~~lGlP~~ 157 (517)
.|+.|+.++|+.|+.|+.- .++.|+|.+
T Consensus 2 ~IS~P~n~~H~~Hv~~d~~~g~f~glP~e 30 (46)
T cd01093 2 EISSPTNFKHRVHVGFDPQTGEFTGLPEE 30 (46)
T ss_pred ccCCCCCceeeeEeeECCCCCcccCCCHH
Confidence 4889999999999999883 347777654
No 68
>PF00786 PBD: P21-Rho-binding domain; InterPro: IPR000095 The molecular bases of the versatile functions of Rho-like GTPases are still unknown. Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB). The Cdc42/Rac interactive binding (CRIB) region has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway []. In fission yeast pak1+ encodes a protein kinase that interacts with Cdc42p and is involved in the control of cell polarity and mating [].; GO: 0005515 protein binding; PDB: 2OV2_O 1EES_B 2ODB_B 1E0A_B 2QME_I 1F3M_B 3PCS_H 1T84_A 2K42_A 1EJ5_A ....
Probab=34.65 E-value=13 Score=29.48 Aligned_cols=28 Identities=54% Similarity=0.794 Sum_probs=18.4
Q ss_pred CCCCcccccccCceehhhhccc-cCCCCc
Q 010138 130 DISWPTEVRHVSHVTFDRFNGF-LGLPTE 157 (517)
Q Consensus 130 ~igwpt~vr~ls~it~~rf~~~-lGlP~~ 157 (517)
+||-|+.++|+.|+.++.-.+. .|+|.+
T Consensus 1 ~Is~P~nf~H~~HVg~d~~~g~~~glp~e 29 (59)
T PF00786_consen 1 DISNPTNFKHVAHVGWDPNTGGFTGLPPE 29 (59)
T ss_dssp TB---EEEEEEEEEEEETTTTEEES--HH
T ss_pred CCCCCCCCcceeeeccCCCccccccCCHH
Confidence 4788999999999999887663 477644
No 69
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=34.43 E-value=20 Score=39.42 Aligned_cols=7 Identities=0% Similarity=0.093 Sum_probs=2.9
Q ss_pred ccCCCCC
Q 010138 443 ESVSDSS 449 (517)
Q Consensus 443 ~~~~~~~ 449 (517)
.++++-.
T Consensus 422 rp~PG~G 428 (458)
T PF10446_consen 422 RPAPGKG 428 (458)
T ss_pred CCCCCch
Confidence 4444433
No 70
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=30.53 E-value=47 Score=36.50 Aligned_cols=34 Identities=38% Similarity=0.580 Sum_probs=30.0
Q ss_pred CchhhhHHHHHHHHHhCCCCCCCCCChHHHhhcc
Q 010138 240 IDVHCLAGLIKAWLRELPTGVLDSLTPDQVMHCN 273 (517)
Q Consensus 240 ~D~h~VAsLLK~fLReLPePLlp~~ly~~~i~~~ 273 (517)
.|+|..++++|+|++.+|+|+++.++...+.+|.
T Consensus 118 aD~~~~~~~~k~~~~~i~Epvvpi~~p~V~r~Ci 151 (514)
T KOG4370|consen 118 ADAHDAAGLIKRFLRQIPEPVVPIEFPSVARSCI 151 (514)
T ss_pred HHHHHHHhHHHHhhhccCCccccccchHHHHHHh
Confidence 5999999999999999999999988777766665
No 71
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=30.44 E-value=27 Score=38.43 Aligned_cols=6 Identities=17% Similarity=0.335 Sum_probs=2.4
Q ss_pred CCCCCh
Q 010138 326 TQMADP 331 (517)
Q Consensus 326 lr~~d~ 331 (517)
++++.+
T Consensus 285 ~~SPPP 290 (458)
T PF10446_consen 285 LRSPPP 290 (458)
T ss_pred ccCCCc
Confidence 344443
Done!