BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010139
(517 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P70371|TERF1_MOUSE Telomeric repeat-binding factor 1 OS=Mus musculus GN=Terf1 PE=1
SV=1
Length = 421
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 115 RKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKW-DRTASQLSQRWNILRK 167
R+KR+ W EED L V+K GEGNWA IL +K+ +RT+ L RW +++
Sbjct: 364 RRKRQTWLWEEDRILKCGVKKYGEGNWAKIL-SHYKFNNRTSVMLKDRWRTMKR 416
>sp|O55036|TERF1_CRIGR Telomeric repeat-binding factor 1 (Fragment) OS=Cricetulus griseus
GN=TERF1 PE=2 SV=1
Length = 438
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 116 KKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKW-DRTASQLSQRWNILRK 167
+KR+ W EED L S V+K GEGNW+ IL +K+ +RT+ L RW ++K
Sbjct: 378 RKRQAWLWEEDKNLRSGVRKYGEGNWSKIL-LHYKFNNRTSVMLKDRWRTMKK 429
>sp|P54274|TERF1_HUMAN Telomeric repeat-binding factor 1 OS=Homo sapiens GN=TERF1 PE=1
SV=3
Length = 439
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 116 KKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKW-DRTASQLSQRWNILRK 167
+KR+ W EED L S V+K GEGNW+ IL +K+ +RT+ L RW ++K
Sbjct: 378 RKRQAWLWEEDKNLRSGVRKYGEGNWSKILLH-YKFNNRTSVMLKDRWRTMKK 429
>sp|O13493|MYB1_NEUCR Myb-like DNA-binding protein myb-1 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=rca-1 PE=3 SV=2
Length = 324
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 114 PRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVI 173
P ++R PW+A ED LI V+ G GNW N+ R RT Q +RW H N+
Sbjct: 5 PDQRRGPWSAGEDQRLIKLVKDLGPGNWVNVAR--ILGTRTPKQCRERW------HQNLK 56
Query: 174 LGSNSSGSQLSEAQLAAR 191
G N EA + R
Sbjct: 57 PGLNHGPMTQEEAAIIVR 74
>sp|Q15554|TERF2_HUMAN Telomeric repeat-binding factor 2 OS=Homo sapiens GN=TERF2 PE=1
SV=2
Length = 500
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 117 KRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRK 167
K++ WT EE + + VQK GEGNWA I + +RTA + RW +++
Sbjct: 446 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 496
>sp|F4I7L1|TRB4_ARATH Telomere repeat-binding factor 4 OS=Arabidopsis thaliana
GN=At1g17520 PE=2 SV=2
Length = 296
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 121 WTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNI-LRKKHGNVILGSNSS 179
WTAEE+ L++ V+K G G W NILR A QLS R NI L+ K N+ +
Sbjct: 8 WTAEEEEALLAGVRKHGPGKWKNILRD----PELAEQLSSRSNIDLKDKWRNLSVAPGIQ 63
Query: 180 GSQ 182
GS+
Sbjct: 64 GSK 66
>sp|O35144|TERF2_MOUSE Telomeric repeat-binding factor 2 OS=Mus musculus GN=Terf2 PE=1
SV=3
Length = 541
Score = 41.6 bits (96), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 117 KRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRK 167
+++ WT EE + V+K GEGNWA I + +RTA + RW ++K
Sbjct: 487 RKQKWTIEESEWVKDGVRKYGEGNWAAISKSYPFVNRTAVMIKDRWRTMKK 537
>sp|Q6R0E3|TRP5_ARATH Telomere repeat-binding protein 5 OS=Arabidopsis thaliana GN=TRP5
PE=1 SV=2
Length = 630
Score = 37.0 bits (84), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 8/134 (5%)
Query: 40 PSDSSLPNSSMVEAPLTINIPN-GQSLRASTE-----NSQPSSLMQGMNITVPVAVQKVP 93
P DS V LT +P+ G+ + S +S+PS+ +G I + P
Sbjct: 444 PEDSDFARPCNVPHTLTRCLPSPGKHAKPSNSVESDLDSKPSAPNRGKTIYSRALIPVSP 503
Query: 94 LPAPTPEVLDANGLIGGSMPPRKKRKPWTAEEDLELISAVQKCGEGNWANI-LRG-DFKW 151
L A V+ + R+ R+P++ E L+ AV++ G G W ++ LR D
Sbjct: 504 LHAQALTVVPPRKTKRSEVAQRRIRRPFSVAEVEALVQAVERLGTGRWRDVKLRAFDNAK 563
Query: 152 DRTASQLSQRWNIL 165
RT L +W L
Sbjct: 564 HRTYVDLKDKWKTL 577
>sp|P10244|MYBB_HUMAN Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=1 SV=1
Length = 700
Score = 35.8 bits (81), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Query: 120 PWTAEEDLELISAVQKCGEGNWANI---LRGDFKWDRTASQLSQRWN 163
PWT EED ++I V+K G W I L+G R Q +RW+
Sbjct: 85 PWTKEEDQKVIELVKKYGTKQWTLIAKHLKG-----RLGKQCRERWH 126
>sp|Q9LK95|MYB21_ARATH Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1
SV=1
Length = 226
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 117 KRKPWTAEEDLELISAVQKCGEGNWANILR-GDFKWDRTASQLSQRW-NILR--KKHGNV 172
++ PWT EEDL LI+ + G+G W ++ + K RT RW N LR + GN+
Sbjct: 21 RKGPWTMEEDLILINYIANHGDGVWNSLAKSAGLK--RTGKSCRLRWLNYLRPDVRRGNI 78
>sp|Q8VWK4|TRB1_ARATH Telomere repeat-binding factor 1 OS=Arabidopsis thaliana GN=TRB1
PE=1 SV=1
Length = 300
Score = 33.9 bits (76), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 118 RKPWTAEEDLELISAVQKCGEGNWANILRG-DFKWDRTASQLSQRWNI-LRKKHGNVILG 175
++ WT EE+ L S V K G G W IL+ +F + L R N+ L+ K N+ +
Sbjct: 5 KQKWTQEEESALKSGVIKHGPGKWRTILKDPEF-----SGVLYLRSNVDLKDKWRNMSVM 59
Query: 176 SNSSGSQLSEAQLAARHAMSL 196
+N GS+ +++LA + SL
Sbjct: 60 ANGWGSR-EKSRLAVKRTFSL 79
>sp|Q54NA6|MYBL_DICDI Myb-like protein L OS=Dictyostelium discoideum GN=mybL PE=3 SV=1
Length = 855
Score = 33.5 bits (75), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Query: 111 SMPPRKKRKPWTAEEDLELISAVQKCGEGNW---ANILRGDFKWDRTASQLSQRW-NIL 165
++ P K+ W+ EED LI+AV G+GNW N ++G RT Q +R+ N+L
Sbjct: 645 TLDPSIKKGRWSPEEDQCLINAVNAYGKGNWILIKNHVKG-----RTDVQCRERYCNVL 698
Score = 33.5 bits (75), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 14/97 (14%)
Query: 112 MPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRW-------NI 164
+ P+ + WT +ED L K G G W+++ + +RT +Q +RW N+
Sbjct: 698 LDPQLTKIRWTPQEDKRLFDITNKVGIGKWSDVAK--LMENRTDNQCWRRWKQLNKSSNV 755
Query: 165 LRKKHGNV-----ILGSNSSGSQLSEAQLAARHAMSL 196
L+ V I SN SG + ++L + +
Sbjct: 756 LKDYQEKVSKKKEICVSNFSGRKHERSELTVDDVIEI 792
>sp|P34127|MYBA_DICDI Myb-like protein A OS=Dictyostelium discoideum GN=mybA PE=4 SV=2
Length = 1230
Score = 33.5 bits (75), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 121 WTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGS 176
WT+EED LI AV + NW I + DRT Q R+ + H N++ G+
Sbjct: 152 WTSEEDQILIKAVNLHNQKNWKKI--AEHFPDRTDVQCHHRYQ--KVLHPNLVKGA 203
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.304 0.120 0.328
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 185,161,621
Number of Sequences: 539616
Number of extensions: 8015343
Number of successful extensions: 40821
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 683
Number of HSP's that attempted gapping in prelim test: 33243
Number of HSP's gapped (non-prelim): 6272
length of query: 517
length of database: 191,569,459
effective HSP length: 122
effective length of query: 395
effective length of database: 125,736,307
effective search space: 49665841265
effective search space used: 49665841265
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 64 (29.3 bits)