Query 010139
Match_columns 517
No_of_seqs 275 out of 1465
Neff 4.3
Searched_HMMs 46136
Date Thu Mar 28 21:30:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010139.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010139hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0048 Transcription factor, 100.0 3.8E-32 8.2E-37 266.3 4.4 105 116-235 7-112 (238)
2 PLN03212 Transcription repress 100.0 1.6E-30 3.5E-35 255.8 5.2 124 89-235 5-128 (249)
3 PLN03091 hypothetical protein; 99.9 6.3E-29 1.4E-33 259.9 4.7 112 108-233 4-115 (459)
4 PF13921 Myb_DNA-bind_6: Myb-l 99.6 2.4E-15 5.2E-20 117.6 4.6 60 121-190 1-60 (60)
5 KOG0049 Transcription factor, 99.6 2E-15 4.4E-20 163.7 4.5 97 111-220 353-449 (939)
6 KOG0049 Transcription factor, 99.4 1.8E-14 3.9E-19 156.4 0.8 103 116-232 303-408 (939)
7 COG5147 REB1 Myb superfamily p 99.4 1.3E-13 2.7E-18 148.8 2.0 108 112-234 14-121 (512)
8 PF00249 Myb_DNA-binding: Myb- 99.3 8.3E-13 1.8E-17 99.8 1.7 46 118-165 1-47 (48)
9 KOG0050 mRNA splicing protein 99.2 1.4E-12 3E-17 139.4 -2.3 101 116-232 5-105 (617)
10 KOG0051 RNA polymerase I termi 99.1 6.7E-11 1.5E-15 129.4 3.9 107 117-233 383-510 (607)
11 smart00717 SANT SANT SWI3, AD 99.0 1.5E-10 3.3E-15 84.1 3.2 46 118-165 1-46 (49)
12 PLN03091 hypothetical protein; 98.9 8.8E-10 1.9E-14 117.0 4.4 72 111-187 60-134 (459)
13 cd00167 SANT 'SWI3, ADA2, N-Co 98.9 1.1E-09 2.3E-14 78.6 3.0 43 120-164 1-43 (45)
14 PLN03212 Transcription repress 98.8 1.9E-09 4.2E-14 107.4 3.1 50 112-164 72-121 (249)
15 PF00249 Myb_DNA-binding: Myb- 98.7 2.1E-09 4.7E-14 81.2 -1.6 46 179-229 1-47 (48)
16 smart00717 SANT SANT SWI3, AD 98.5 2E-08 4.3E-13 72.9 0.8 47 179-231 1-48 (49)
17 PF13921 Myb_DNA-bind_6: Myb-l 98.4 3.6E-08 7.7E-13 77.1 -0.4 47 182-234 1-47 (60)
18 cd00167 SANT 'SWI3, ADA2, N-Co 98.3 1.5E-07 3.3E-12 67.3 0.7 43 181-229 1-44 (45)
19 KOG0048 Transcription factor, 98.3 3.6E-07 7.7E-12 90.4 3.2 51 111-164 55-105 (238)
20 COG5147 REB1 Myb superfamily p 98.1 6.9E-07 1.5E-11 97.4 0.8 107 114-230 287-396 (512)
21 TIGR01557 myb_SHAQKYF myb-like 98.0 5E-06 1.1E-10 66.3 4.1 51 116-167 1-55 (57)
22 KOG0457 Histone acetyltransfer 97.3 0.00013 2.7E-09 78.2 2.8 48 116-165 70-117 (438)
23 KOG0051 RNA polymerase I termi 97.1 0.00038 8.2E-09 77.4 3.8 109 115-232 433-569 (607)
24 PF13837 Myb_DNA-bind_4: Myb/S 97.0 0.00021 4.5E-09 59.4 0.6 58 118-175 1-73 (90)
25 COG5259 RSC8 RSC chromatin rem 96.5 0.0011 2.3E-08 71.9 1.8 46 117-165 278-323 (531)
26 PF08914 Myb_DNA-bind_2: Rap1 96.1 0.0032 7E-08 51.6 2.2 45 118-164 2-55 (65)
27 KOG0050 mRNA splicing protein 96.0 0.0054 1.2E-07 67.3 3.7 51 111-165 52-102 (617)
28 KOG1279 Chromatin remodeling f 95.9 0.005 1.1E-07 67.8 2.8 48 115-165 250-297 (506)
29 PF13325 MCRS_N: N-terminal re 95.7 0.0045 9.7E-08 60.9 1.6 114 120-239 1-135 (199)
30 PF13873 Myb_DNA-bind_5: Myb/S 95.7 0.0098 2.1E-07 48.8 3.2 51 117-167 1-70 (78)
31 TIGR02894 DNA_bind_RsfA transc 95.4 0.0068 1.5E-07 57.8 1.4 47 117-166 3-55 (161)
32 COG5114 Histone acetyltransfer 94.6 0.016 3.4E-07 60.7 1.7 46 118-165 63-108 (432)
33 PRK13923 putative spore coat p 91.8 0.06 1.3E-06 52.0 0.6 46 116-164 3-54 (170)
34 KOG4282 Transcription factor G 91.8 0.077 1.7E-06 55.1 1.4 55 118-172 54-119 (345)
35 KOG0457 Histone acetyltransfer 91.0 0.089 1.9E-06 57.0 0.9 49 177-230 70-118 (438)
36 TIGR01557 myb_SHAQKYF myb-like 90.1 0.13 2.9E-06 41.1 1.1 43 179-227 3-51 (57)
37 PF09111 SLIDE: SLIDE; InterP 90.1 0.13 2.7E-06 46.9 1.0 51 115-165 46-109 (118)
38 PF12776 Myb_DNA-bind_3: Myb/S 87.8 0.42 9.1E-06 40.2 2.6 48 120-167 1-63 (96)
39 PF08914 Myb_DNA-bind_2: Rap1 87.4 0.095 2.1E-06 43.1 -1.5 55 179-234 2-61 (65)
40 PF13325 MCRS_N: N-terminal re 83.7 0.76 1.6E-05 45.6 2.4 54 116-169 71-129 (199)
41 TIGR02894 DNA_bind_RsfA transc 83.4 0.27 5.8E-06 47.2 -0.8 55 177-233 2-58 (161)
42 COG5118 BDP1 Transcription ini 83.0 1 2.2E-05 48.5 3.2 53 110-165 357-409 (507)
43 KOG2656 DNA methyltransferase 77.8 5.1 0.00011 43.5 6.3 49 118-167 130-182 (445)
44 KOG1279 Chromatin remodeling f 76.8 2.4 5.1E-05 47.4 3.6 46 178-229 252-297 (506)
45 PLN03142 Probable chromatin-re 74.1 2.6 5.7E-05 50.7 3.3 49 116-164 924-982 (1033)
46 COG5259 RSC8 RSC chromatin rem 73.8 1.7 3.6E-05 48.0 1.5 44 178-227 278-321 (531)
47 PLN03162 golden-2 like transcr 66.0 13 0.00028 40.4 6.0 72 113-184 232-305 (526)
48 PF13837 Myb_DNA-bind_4: Myb/S 64.4 0.56 1.2E-05 38.8 -3.5 51 180-231 2-65 (90)
49 PF11626 Rap1_C: TRF2-interact 64.1 6.1 0.00013 33.8 2.6 24 114-137 43-74 (87)
50 COG5114 Histone acetyltransfer 62.2 3.4 7.4E-05 43.9 0.9 46 179-229 63-108 (432)
51 KOG4167 Predicted DNA-binding 51.5 11 0.00024 44.0 2.7 44 118-164 619-662 (907)
52 KOG1194 Predicted DNA-binding 48.3 12 0.00027 41.4 2.4 58 114-174 183-240 (534)
53 PRK11179 DNA-binding transcrip 47.8 14 0.0003 34.2 2.4 42 123-167 8-49 (153)
54 PF13873 Myb_DNA-bind_5: Myb/S 46.1 5.6 0.00012 32.5 -0.5 50 179-229 2-68 (78)
55 PRK13923 putative spore coat p 45.1 2.8 6E-05 40.8 -2.8 55 177-233 3-59 (170)
56 PLN03142 Probable chromatin-re 44.6 25 0.00053 42.8 4.3 104 120-231 826-985 (1033)
57 PF12776 Myb_DNA-bind_3: Myb/S 43.9 6.7 0.00015 32.8 -0.3 48 181-228 1-60 (96)
58 PF13404 HTH_AsnC-type: AsnC-t 43.1 15 0.00032 27.6 1.4 39 124-165 3-41 (42)
59 KOG0384 Chromodomain-helicase 42.8 11 0.00023 46.3 0.9 31 117-147 1132-1162(1373)
60 PF04504 DUF573: Protein of un 40.6 31 0.00068 30.3 3.3 79 117-196 3-94 (98)
61 COG5118 BDP1 Transcription ini 39.7 15 0.00034 39.9 1.5 46 180-231 366-411 (507)
62 PF07750 GcrA: GcrA cell cycle 39.2 26 0.00057 33.5 2.9 37 181-224 2-38 (162)
63 PRK11169 leucine-responsive tr 38.4 20 0.00043 33.6 1.9 42 123-167 13-54 (164)
64 KOG2009 Transcription initiati 36.1 36 0.00077 39.0 3.7 52 111-165 402-453 (584)
65 KOG1194 Predicted DNA-binding 34.5 47 0.001 37.2 4.1 46 178-229 186-231 (534)
66 KOG4468 Polycomb-group transcr 32.0 50 0.0011 38.1 3.9 61 118-180 88-158 (782)
67 PF09420 Nop16: Ribosome bioge 29.3 70 0.0015 30.4 3.9 48 116-164 112-161 (164)
68 smart00595 MADF subfamily of S 28.9 16 0.00036 30.2 -0.3 23 141-166 30-52 (89)
69 KOG2656 DNA methyltransferase 26.1 11 0.00025 41.0 -2.2 50 178-233 129-184 (445)
70 PF10545 MADF_DNA_bdg: Alcohol 21.7 25 0.00053 28.2 -0.6 25 141-166 29-53 (85)
71 KOG4329 DNA-binding protein [G 21.4 81 0.0017 34.6 3.0 44 119-164 278-321 (445)
72 PF09111 SLIDE: SLIDE; InterP 21.2 77 0.0017 29.1 2.5 34 177-213 47-82 (118)
73 PRK09413 IS2 repressor TnpA; R 20.2 3.5E+02 0.0076 24.2 6.5 94 117-216 9-119 (121)
No 1
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.97 E-value=3.8e-32 Score=266.31 Aligned_cols=105 Identities=18% Similarity=0.211 Sum_probs=100.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccc-cCCchhhhhHHHhhhhccccccCCCCCCCCCCHHHHHHHHHHH
Q 010139 116 KKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKW-DRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAM 194 (517)
Q Consensus 116 kKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~p-gRT~kQCReRW~nirrr~~~LdP~~IkkgpWT~EED~~Lleav 194 (517)
+.||+||+|||++|+++|++||.++|..|++. .+ +|++|+||.||.| ||+|+ |+++.||+|||++|++++
T Consensus 7 ~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~--~gl~R~GKSCRlRW~N------yLrP~-ikrg~fT~eEe~~Ii~lH 77 (238)
T KOG0048|consen 7 LVKGPWTQEEDLTQIRSIKSFGKHNGTALPKL--AGLRRCGKSCRLRWTN------YLRPD-LKRGNFSDEEEDLIIKLH 77 (238)
T ss_pred ccCCCCChHHHHHHHHHHHHhCCCCcchhhhh--cCCCccchHHHHHhhc------ccCCC-ccCCCCCHHHHHHHHHHH
Confidence 45799999999999999999999999999998 56 9999999999999 99999 999999999999999999
Q ss_pred HhhcCCCCCCchhHhhccCCCCCCCCCccccCCCCCCCCcc
Q 010139 195 SLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAEAS 235 (517)
Q Consensus 195 ~~al~~G~kk~Ws~IA~~LPGRTdn~~IKNrWns~lr~~~s 235 (517)
.. +|++ |+.||++|||||||. |||||+++++++..
T Consensus 78 ~~---~GNr--Ws~IA~~LPGRTDNe-IKN~Wnt~lkkkl~ 112 (238)
T KOG0048|consen 78 AL---LGNR--WSLIAGRLPGRTDNE-VKNHWNTHLKKKLL 112 (238)
T ss_pred HH---HCcH--HHHHHhhCCCcCHHH-HHHHHHHHHHHHHH
Confidence 99 9999 999999999999999 99999999988855
No 2
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.96 E-value=1.6e-30 Score=255.81 Aligned_cols=124 Identities=23% Similarity=0.290 Sum_probs=110.0
Q ss_pred ccCCCCCCCCccccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhhc
Q 010139 89 VQKVPLPAPTPEVLDANGLIGGSMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKK 168 (517)
Q Consensus 89 ~~kq~l~~~S~d~~d~nG~~s~sl~~rkKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirrr 168 (517)
..+.++++-.+.+|++.+. +|++||+|||++|+.+|++||..+|..||+. +.++|+++|||+||.+
T Consensus 5 ~~~~~~~~~~~pcc~K~gl---------KRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~-~g~gRT~KQCReRW~N---- 70 (249)
T PLN03212 5 GGKKPVSKKTTPCCTKMGM---------KRGPWTVEEDEILVSFIKKEGEGRWRSLPKR-AGLLRCGKSCRLRWMN---- 70 (249)
T ss_pred CCCCCCCCCCCCCcccCCC---------cCCCCCHHHHHHHHHHHHHhCcccHHHHHHh-hhcCCCcchHHHHHHH----
Confidence 3344444444666766666 8999999999999999999999999999987 2369999999999999
Q ss_pred cccccCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCchhHhhccCCCCCCCCCccccCCCCCCCCcc
Q 010139 169 HGNVILGSNSSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAEAS 235 (517)
Q Consensus 169 ~~~LdP~~IkkgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LPGRTdn~~IKNrWns~lr~~~s 235 (517)
+|+|+ |++++||.|||++|++++.. ||++ |+.||++|||||+++ |||||+.++++...
T Consensus 71 --~L~P~-I~kgpWT~EED~lLlel~~~---~GnK--Ws~IAk~LpGRTDnq-IKNRWns~LrK~l~ 128 (249)
T PLN03212 71 --YLRPS-VKRGGITSDEEDLILRLHRL---LGNR--WSLIAGRIPGRTDNE-IKNYWNTHLRKKLL 128 (249)
T ss_pred --hhchh-cccCCCChHHHHHHHHHHHh---cccc--HHHHHhhcCCCCHHH-HHHHHHHHHhHHHH
Confidence 99999 99999999999999999999 9999 999999999999999 99999999988733
No 3
>PLN03091 hypothetical protein; Provisional
Probab=99.95 E-value=6.3e-29 Score=259.85 Aligned_cols=112 Identities=15% Similarity=0.254 Sum_probs=104.4
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhhccccccCCCCCCCCCCHHHH
Q 010139 108 IGGSMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQ 187 (517)
Q Consensus 108 ~s~sl~~rkKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirrr~~~LdP~~IkkgpWT~EED 187 (517)
..+..+.+.+|++||+|||++|+++|++||.++|..||+.+ .++|+++|||+||.+ ||+|+ |++++||.|||
T Consensus 4 ~~Cc~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~-g~gRT~KQCRERW~N------yLdP~-IkKgpWT~EED 75 (459)
T PLN03091 4 HSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQA-GLQRCGKSCRLRWIN------YLRPD-LKRGTFSQQEE 75 (459)
T ss_pred CccCcCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhh-ccCcCcchHhHHHHh------ccCCc-ccCCCCCHHHH
Confidence 34456778899999999999999999999999999999862 469999999999999 99999 99999999999
Q ss_pred HHHHHHHHhhcCCCCCCchhHhhccCCCCCCCCCccccCCCCCCCC
Q 010139 188 LAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAE 233 (517)
Q Consensus 188 ~~Lleav~~al~~G~kk~Ws~IA~~LPGRTdn~~IKNrWns~lr~~ 233 (517)
++|++++.. ||++ |++||.+|||||+++ |||||+..+++.
T Consensus 76 ~lLLeL~k~---~GnK--WskIAk~LPGRTDnq-IKNRWnslLKKk 115 (459)
T PLN03091 76 NLIIELHAV---LGNR--WSQIAAQLPGRTDNE-IKNLWNSCLKKK 115 (459)
T ss_pred HHHHHHHHH---hCcc--hHHHHHhcCCCCHHH-HHHHHHHHHHHH
Confidence 999999999 9999 999999999999999 999999988875
No 4
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.56 E-value=2.4e-15 Score=117.58 Aligned_cols=60 Identities=32% Similarity=0.468 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhhccccccCCCCCCCCCCHHHHHHH
Q 010139 121 WTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAA 190 (517)
Q Consensus 121 WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirrr~~~LdP~~IkkgpWT~EED~~L 190 (517)
||+|||++|+.+|.+|| .+|..||+. ++.|++.||+.||.+ +|+|. +++++||.+||+.|
T Consensus 1 WT~eEd~~L~~~~~~~g-~~W~~Ia~~--l~~Rt~~~~~~r~~~------~l~~~-~~~~~wt~eEd~~L 60 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYG-NDWKKIAEH--LGNRTPKQCRNRWRN------HLRPK-ISRGPWTKEEDQRL 60 (60)
T ss_dssp S-HHHHHHHHHHHHHHT-S-HHHHHHH--STTS-HHHHHHHHHH------TTSTT-STSSSSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC-cCHHHHHHH--HCcCCHHHHHHHHHH------HCccc-ccCCCcCHHHHhcC
Confidence 99999999999999999 799999997 767999999999999 89998 99999999999876
No 5
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.55 E-value=2e-15 Score=163.67 Aligned_cols=97 Identities=22% Similarity=0.270 Sum_probs=92.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhhccccccCCCCCCCCCCHHHHHHH
Q 010139 111 SMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAA 190 (517)
Q Consensus 111 sl~~rkKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirrr~~~LdP~~IkkgpWT~EED~~L 190 (517)
.|.+..++++||.+||.+|+.+|.+||.+.|.+|-+. +|+|+..|||+||.| .|+.. .+++.|+..||+.|
T Consensus 353 ~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~--vPnRSdsQcR~RY~n------vL~~s-~K~~rW~l~edeqL 423 (939)
T KOG0049|consen 353 TLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQA--VPNRSDSQCRERYTN------VLNRS-AKVERWTLVEDEQL 423 (939)
T ss_pred ccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHh--cCCccHHHHHHHHHH------HHHHh-hccCceeecchHHH
Confidence 4789999999999999999999999999999999987 899999999999999 89999 99999999999999
Q ss_pred HHHHHhhcCCCCCCchhHhhccCCCCCCCC
Q 010139 191 RHAMSLALDMPVKNITASCTNTTAGTTSSA 220 (517)
Q Consensus 191 leav~~al~~G~kk~Ws~IA~~LPGRTdn~ 220 (517)
+.+|.. ||.. .|.+||.+||.||..+
T Consensus 424 ~~~V~~---YG~g-~WakcA~~Lp~~t~~q 449 (939)
T KOG0049|consen 424 LYAVKV---YGKG-NWAKCAMLLPKKTSRQ 449 (939)
T ss_pred HHHHHH---Hccc-hHHHHHHHccccchhH
Confidence 999999 9987 7999999999999955
No 6
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.44 E-value=1.8e-14 Score=156.40 Aligned_cols=103 Identities=20% Similarity=0.230 Sum_probs=94.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCC---CcceeecccccccCCchhhhhHHHhhhhccccccCCCCCCCCCCHHHHHHHHH
Q 010139 116 KKRKPWTAEEDLELISAVQKCGEG---NWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARH 192 (517)
Q Consensus 116 kKrg~WT~EEDe~Ll~lV~k~G~g---nW~~IAk~~f~pgRT~kQCReRW~nirrr~~~LdP~~IkkgpWT~EED~~Lle 192 (517)
.+++.||+|||.+|+++|++...+ +|++|-.+ |+||+..|+-.||.. .|+|+ |++|+||.+||.+|+.
T Consensus 303 L~ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Y--mpgr~~~qLI~R~~~------~LdPs-ikhg~wt~~ED~~L~~ 373 (939)
T KOG0049|consen 303 LSEKEWSEEEDTKLIALVKITSINSHIQWDKVVQY--MPGRTRQQLITRFSH------TLDPS-VKHGRWTDQEDVLLVC 373 (939)
T ss_pred HHhhhcchhhhHHHHHHHHHhhccCccchHHHHHh--cCCcchhhhhhhhee------ccCcc-ccCCCCCCHHHHHHHH
Confidence 456899999999999999988655 59999976 999999999999999 99999 9999999999999999
Q ss_pred HHHhhcCCCCCCchhHhhccCCCCCCCCCccccCCCCCCC
Q 010139 193 AMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANA 232 (517)
Q Consensus 193 av~~al~~G~kk~Ws~IA~~LPGRTdn~~IKNrWns~lr~ 232 (517)
+|.+ ||.+ .|.+|-..+|||++.| |+.||...|..
T Consensus 374 AV~~---Yg~k-dw~k~R~~vPnRSdsQ-cR~RY~nvL~~ 408 (939)
T KOG0049|consen 374 AVSR---YGAK-DWAKVRQAVPNRSDSQ-CRERYTNVLNR 408 (939)
T ss_pred HHHH---hCcc-chhhHHHhcCCccHHH-HHHHHHHHHHH
Confidence 9999 9877 7999999999999999 99988776543
No 7
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=99.37 E-value=1.3e-13 Score=148.83 Aligned_cols=108 Identities=19% Similarity=0.210 Sum_probs=100.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhhccccccCCCCCCCCCCHHHHHHHH
Q 010139 112 MPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAAR 191 (517)
Q Consensus 112 l~~rkKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirrr~~~LdP~~IkkgpWT~EED~~Ll 191 (517)
+.-+++.+.|+..||+.|..+|++||..+|..||.. +..|+++||+.||.+ +|+|. +++..|+.|||..|+
T Consensus 14 ~~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~--~~~~~~kq~~~rw~~------~lnp~-lk~~~~~~eed~~li 84 (512)
T COG5147 14 MQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASL--LISSTGKQSSNRWNN------HLNPQ-LKKKNWSEEEDEQLI 84 (512)
T ss_pred ccceecCCCCCCcchhHHHHHHhhcccccHHHHHHH--hcccccccccchhhh------hhchh-cccccccHHHHHHHH
Confidence 355678899999999999999999999999999997 566999999999999 99999 999999999999999
Q ss_pred HHHHhhcCCCCCCchhHhhccCCCCCCCCCccccCCCCCCCCc
Q 010139 192 HAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAEA 234 (517)
Q Consensus 192 eav~~al~~G~kk~Ws~IA~~LPGRTdn~~IKNrWns~lr~~~ 234 (517)
++..+ +|.. |+.|+..++|||..+ |.++|..++....
T Consensus 85 ~l~~~---~~~~--wstia~~~d~rt~~~-~~ery~~~~~~~~ 121 (512)
T COG5147 85 DLDKE---LGTQ--WSTIADYKDRRTAQQ-CVERYVNTLEDLS 121 (512)
T ss_pred HHHHh---cCch--hhhhccccCccchHH-HHHHHHHHhhhhh
Confidence 99999 9999 999999999999999 9999997776653
No 8
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.29 E-value=8.3e-13 Score=99.84 Aligned_cols=46 Identities=46% Similarity=0.734 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCcceeecccccc-cCCchhhhhHHHhh
Q 010139 118 RKPWTAEEDLELISAVQKCGEGNWANILRGDFKW-DRTASQLSQRWNIL 165 (517)
Q Consensus 118 rg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~p-gRT~kQCReRW~ni 165 (517)
|++||+|||++|+++|.+||.++|..||.. ++ +||..||+.||++|
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~--~~~~Rt~~qc~~~~~~~ 47 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKR--MPGGRTAKQCRSRYQNL 47 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHH--HSSSSTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHH--cCCCCCHHHHHHHHHhh
Confidence 689999999999999999997779999998 77 99999999999983
No 9
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.19 E-value=1.4e-12 Score=139.38 Aligned_cols=101 Identities=23% Similarity=0.227 Sum_probs=92.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhhccccccCCCCCCCCCCHHHHHHHHHHHH
Q 010139 116 KKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAMS 195 (517)
Q Consensus 116 kKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirrr~~~LdP~~IkkgpWT~EED~~Lleav~ 195 (517)
.+.+-|+.-||+.|..+|.+||...|..|+.. +...+.+||+.||.. +|||. |++..|+.|||+.|+++..
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~sl--l~~kt~rqC~~rw~e------~ldp~-i~~tews~eederlLhlak 75 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASL--LNRKTARQCKARWEE------WLDPA-IKKTEWSREEDERLLHLAK 75 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHHHH--HhhcchhHHHHHHHH------HhCHH-HhhhhhhhhHHHHHHHHHH
Confidence 46789999999999999999999999999998 789999999999999 99999 9999999999999999999
Q ss_pred hhcCCCCCCchhHhhccCCCCCCCCCccccCCCCCCC
Q 010139 196 LALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANA 232 (517)
Q Consensus 196 ~al~~G~kk~Ws~IA~~LPGRTdn~~IKNrWns~lr~ 232 (517)
+ ++.. |..|+..| |||.++ |-.||+..+-.
T Consensus 76 l---~p~q--wrtIa~i~-gr~~~q-c~eRy~~ll~~ 105 (617)
T KOG0050|consen 76 L---EPTQ--WRTIADIM-GRTSQQ-CLERYNNLLDV 105 (617)
T ss_pred h---cCCc--cchHHHHh-hhhHHH-HHHHHHHHHHH
Confidence 9 9999 99999855 999999 88887765443
No 10
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=99.07 E-value=6.7e-11 Score=129.40 Aligned_cols=107 Identities=18% Similarity=0.214 Sum_probs=90.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhhccccccCCCCCCCCCCHHHHHHHHHHHHh
Q 010139 117 KRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAMSL 196 (517)
Q Consensus 117 Krg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirrr~~~LdP~~IkkgpWT~EED~~Lleav~~ 196 (517)
++|.||+||++.|..+|.++| +.|..|+.. -+|.+..||+||++|.+++.. .+++.||.||++.|+++|..
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig~~---lgr~P~~crd~wr~~~~~g~~-----~~r~~Ws~eEe~~Llk~V~~ 453 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHG-NDWKEIGKA---LGRMPMDCRDRWRQYVKCGSK-----RNRGAWSIEEEEKLLKTVNE 453 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhc-ccHHHHHHH---HccCcHHHHHHHHHhhccccc-----cccCcchHHHHHHHHHHHHH
Confidence 799999999999999999999 999999986 499999999999995443332 68889999999999999973
Q ss_pred hcC----C------------C-----CCCchhHhhccCCCCCCCCCccccCCCCCCCC
Q 010139 197 ALD----M------------P-----VKNITASCTNTTAGTTSSATMNNPVPSTANAE 233 (517)
Q Consensus 197 al~----~------------G-----~kk~Ws~IA~~LPGRTdn~~IKNrWns~lr~~ 233 (517)
.+. + + ...+|..|+..+..|+-.+ |+-.|+.++...
T Consensus 454 ~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~q-Cr~Kw~kl~~~~ 510 (607)
T KOG0051|consen 454 MIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQ-CRYKWYKLTTSP 510 (607)
T ss_pred HHHHhhcccccccchhhhcCccccccCCcchhhhhHhhcCCCcch-HHHHHHHHHhhH
Confidence 221 1 1 2236999999889999999 999999888766
No 11
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=99.03 E-value=1.5e-10 Score=84.09 Aligned_cols=46 Identities=46% Similarity=0.723 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhh
Q 010139 118 RKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 165 (517)
Q Consensus 118 rg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~ni 165 (517)
++.||++||++|+.++.+||..+|..|+.. +++|++.+|+.||.++
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~--~~~rt~~~~~~~~~~~ 46 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKE--LPGRTAEQCRERWNNL 46 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHH--cCCCCHHHHHHHHHHH
Confidence 468999999999999999999999999998 7899999999999984
No 12
>PLN03091 hypothetical protein; Provisional
Probab=98.90 E-value=8.8e-10 Score=117.00 Aligned_cols=72 Identities=18% Similarity=0.281 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhh---ccccccCCCCCCCCCCHHHH
Q 010139 111 SMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRK---KHGNVILGSNSSGSQLSEAQ 187 (517)
Q Consensus 111 sl~~rkKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirr---r~~~LdP~~IkkgpWT~EED 187 (517)
+|.+..++++||+|||++|++++.+|| .+|..||+. ++|||+.||+.||+.+.| +...++|. .+.++++.|+
T Consensus 60 yLdP~IkKgpWT~EED~lLLeL~k~~G-nKWskIAk~--LPGRTDnqIKNRWnslLKKklr~~~I~p~--t~kpl~e~E~ 134 (459)
T PLN03091 60 YLRPDLKRGTFSQQEENLIIELHAVLG-NRWSQIAAQ--LPGRTDNEIKNLWNSCLKKKLRQRGIDPN--THKPLSEVEN 134 (459)
T ss_pred ccCCcccCCCCCHHHHHHHHHHHHHhC-cchHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHcCCCCC--CCCCcccccc
Confidence 368889999999999999999999999 789999987 899999999999997533 23446664 4556665543
No 13
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.88 E-value=1.1e-09 Score=78.60 Aligned_cols=43 Identities=44% Similarity=0.767 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHh
Q 010139 120 PWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNI 164 (517)
Q Consensus 120 ~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~n 164 (517)
+||+|||+.|+.++.+||.++|..|++. +++|+..||+.||.+
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~--~~~rs~~~~~~~~~~ 43 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKE--LPGRTPKQCRERWRN 43 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhH--cCCCCHHHHHHHHHH
Confidence 5999999999999999999999999997 889999999999987
No 14
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.82 E-value=1.9e-09 Score=107.44 Aligned_cols=50 Identities=24% Similarity=0.395 Sum_probs=47.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHh
Q 010139 112 MPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNI 164 (517)
Q Consensus 112 l~~rkKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~n 164 (517)
|++..++++||+|||++|++++.+|| .+|..||+. ++|||..||+.||..
T Consensus 72 L~P~I~kgpWT~EED~lLlel~~~~G-nKWs~IAk~--LpGRTDnqIKNRWns 121 (249)
T PLN03212 72 LRPSVKRGGITSDEEDLILRLHRLLG-NRWSLIAGR--IPGRTDNEIKNYWNT 121 (249)
T ss_pred hchhcccCCCChHHHHHHHHHHHhcc-ccHHHHHhh--cCCCCHHHHHHHHHH
Confidence 68889999999999999999999999 789999987 899999999999998
No 15
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=98.66 E-value=2.1e-09 Score=81.22 Aligned_cols=46 Identities=11% Similarity=0.011 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCchhHhhccCC-CCCCCCCccccCCCC
Q 010139 179 SGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTA-GTTSSATMNNPVPST 229 (517)
Q Consensus 179 kgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LP-GRTdn~~IKNrWns~ 229 (517)
+++||.|||++|++++.+ ||.+ +|..|+..|| |||..+ |++||+.+
T Consensus 1 r~~Wt~eE~~~l~~~v~~---~g~~-~W~~Ia~~~~~~Rt~~q-c~~~~~~~ 47 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKK---YGKD-NWKKIAKRMPGGRTAKQ-CRSRYQNL 47 (48)
T ss_dssp S-SS-HHHHHHHHHHHHH---STTT-HHHHHHHHHSSSSTHHH-HHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH---hCCc-HHHHHHHHcCCCCCHHH-HHHHHHhh
Confidence 578999999999999999 9877 7999999999 999999 99999764
No 16
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.54 E-value=2e-08 Score=72.86 Aligned_cols=47 Identities=9% Similarity=-0.022 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCC-CCCchhHhhccCCCCCCCCCccccCCCCCC
Q 010139 179 SGSQLSEAQLAARHAMSLALDMP-VKNITASCTNTTAGTTSSATMNNPVPSTAN 231 (517)
Q Consensus 179 kgpWT~EED~~Lleav~~al~~G-~kk~Ws~IA~~LPGRTdn~~IKNrWns~lr 231 (517)
+++||.+||.+|++++.. +| .. |..|+..|++||..+ |++||+..++
T Consensus 1 ~~~Wt~~E~~~l~~~~~~---~g~~~--w~~Ia~~~~~rt~~~-~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKK---YGKNN--WEKIAKELPGRTAEQ-CRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHH---HCcCC--HHHHHHHcCCCCHHH-HHHHHHHHcC
Confidence 368999999999999999 99 77 999999999999999 9999987664
No 17
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=98.43 E-value=3.6e-08 Score=77.11 Aligned_cols=47 Identities=6% Similarity=-0.095 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCchhHhhccCCCCCCCCCccccCCCCCCCCc
Q 010139 182 QLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAEA 234 (517)
Q Consensus 182 WT~EED~~Lleav~~al~~G~kk~Ws~IA~~LPGRTdn~~IKNrWns~lr~~~ 234 (517)
||.|||++|+++|.. ||++ |..||.+|+.||..+ |++||+..|++..
T Consensus 1 WT~eEd~~L~~~~~~---~g~~--W~~Ia~~l~~Rt~~~-~~~r~~~~l~~~~ 47 (60)
T PF13921_consen 1 WTKEEDELLLELVKK---YGND--WKKIAEHLGNRTPKQ-CRNRWRNHLRPKI 47 (60)
T ss_dssp S-HHHHHHHHHHHHH---HTS---HHHHHHHSTTS-HHH-HHHHHHHTTSTTS
T ss_pred CCHHHHHHHHHHHHH---HCcC--HHHHHHHHCcCCHHH-HHHHHHHHCcccc
Confidence 999999999999999 9988 999999996699999 9999999887653
No 18
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.31 E-value=1.5e-07 Score=67.35 Aligned_cols=43 Identities=9% Similarity=-0.048 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHhhcCCC-CCCchhHhhccCCCCCCCCCccccCCCC
Q 010139 181 SQLSEAQLAARHAMSLALDMP-VKNITASCTNTTAGTTSSATMNNPVPST 229 (517)
Q Consensus 181 pWT~EED~~Lleav~~al~~G-~kk~Ws~IA~~LPGRTdn~~IKNrWns~ 229 (517)
+||.+||..|++++.. +| .. |..|+..+++||..+ |++||+..
T Consensus 1 ~Wt~eE~~~l~~~~~~---~g~~~--w~~Ia~~~~~rs~~~-~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKK---YGKNN--WEKIAKELPGRTPKQ-CRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHH---HCcCC--HHHHHhHcCCCCHHH-HHHHHHHh
Confidence 5999999999999999 99 77 999999999999999 99999754
No 19
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=98.30 E-value=3.6e-07 Score=90.43 Aligned_cols=51 Identities=25% Similarity=0.409 Sum_probs=48.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHh
Q 010139 111 SMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNI 164 (517)
Q Consensus 111 sl~~rkKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~n 164 (517)
+|++..+|+.||+|||++|+.+...+| .+|..||++ +||||+..++..|.-
T Consensus 55 yLrP~ikrg~fT~eEe~~Ii~lH~~~G-NrWs~IA~~--LPGRTDNeIKN~Wnt 105 (238)
T KOG0048|consen 55 YLRPDLKRGNFSDEEEDLIIKLHALLG-NRWSLIAGR--LPGRTDNEVKNHWNT 105 (238)
T ss_pred ccCCCccCCCCCHHHHHHHHHHHHHHC-cHHHHHHhh--CCCcCHHHHHHHHHH
Confidence 478999999999999999999999999 779999998 999999999999974
No 20
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=98.12 E-value=6.9e-07 Score=97.36 Aligned_cols=107 Identities=16% Similarity=0.156 Sum_probs=82.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhhccccccCCCCCCCCCCHHHHHHHHHH
Q 010139 114 PRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHA 193 (517)
Q Consensus 114 ~rkKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirrr~~~LdP~~IkkgpWT~EED~~Llea 193 (517)
.=..++.||.|||..|...+.++| +.|..|.+. .+|-+..||+||++|.+++ .++++++|+.||+.+|...
T Consensus 287 ~f~~~~~wt~e~~~eL~~~~~~~~-~~w~~ig~~---~~rmp~~crd~wr~~~~~g-----~t~~~~~ws~eee~~l~~v 357 (512)
T COG5147 287 IFEQRGKWTKEEEQELAKLVVEHG-GSWTEIGKL---LGRMPNDCRDRWRDYVKCG-----DTLKRNRWSIEEEELLDKV 357 (512)
T ss_pred HHhhhccCcccccccccccccccc-chhhHhhhh---hccCcHHHHHHHhhhcccc-----CccCCCCCchhhhhhHHHH
Confidence 335689999999999999999999 999999985 4899999999999965554 1488889999999988877
Q ss_pred HHhhcC---CCCCCchhHhhccCCCCCCCCCccccCCCCC
Q 010139 194 MSLALD---MPVKNITASCTNTTAGTTSSATMNNPVPSTA 230 (517)
Q Consensus 194 v~~al~---~G~kk~Ws~IA~~LPGRTdn~~IKNrWns~l 230 (517)
+..... .-....|..|+.+++.|.-.. +.-+++.+.
T Consensus 358 v~e~~~~~~~~~~~~~~li~~~~~~~~~~~-~~~~~~~~~ 396 (512)
T COG5147 358 VNEMRLEAQQSSRILWLLIAQNIRNRLQHH-CRDKYGVLI 396 (512)
T ss_pred HHHHHHHHhhhhhhhHHHHHHhhhccccCC-CCCcccccc
Confidence 774221 112225999999999888666 544444433
No 21
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=98.04 E-value=5e-06 Score=66.30 Aligned_cols=51 Identities=31% Similarity=0.410 Sum_probs=44.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCc---ceeecccccccC-CchhhhhHHHhhhh
Q 010139 116 KKRKPWTAEEDLELISAVQKCGEGNW---ANILRGDFKWDR-TASQLSQRWNILRK 167 (517)
Q Consensus 116 kKrg~WT~EEDe~Ll~lV~k~G~gnW---~~IAk~~f~pgR-T~kQCReRW~nirr 167 (517)
++|..||+||...++.+++.+|.|+| ..|++.+ ...| |..||+.+.+.|+-
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~-~~~~lT~~qV~SH~QKy~~ 55 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELM-VVDGLTRDQVASHLQKYRL 55 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHc-CCCCCCHHHHHHHHHHHHc
Confidence 36789999999999999999998899 9999863 3355 99999999998643
No 22
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.32 E-value=0.00013 Score=78.16 Aligned_cols=48 Identities=25% Similarity=0.440 Sum_probs=44.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhh
Q 010139 116 KKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 165 (517)
Q Consensus 116 kKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~ni 165 (517)
.-...||.+|+-+|+++++.||.|||..||.+ +..|+..+|+++|.++
T Consensus 70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~h--IGtKtkeeck~hy~k~ 117 (438)
T KOG0457|consen 70 ILDPSWTADEEILLLEAAETYGFGNWQDIADH--IGTKTKEECKEHYLKH 117 (438)
T ss_pred CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHH--HcccchHHHHHHHHHH
Confidence 45678999999999999999999999999998 8899999999999984
No 23
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=97.09 E-value=0.00038 Score=77.42 Aligned_cols=109 Identities=15% Similarity=0.167 Sum_probs=74.7
Q ss_pred CCCCCCCCHHHHHHHHHHHH-------Hc------------------CCCCcceeecccccccCCchhhhhHHHhhhhcc
Q 010139 115 RKKRKPWTAEEDLELISAVQ-------KC------------------GEGNWANILRGDFKWDRTASQLSQRWNILRKKH 169 (517)
Q Consensus 115 rkKrg~WT~EEDe~Ll~lV~-------k~------------------G~gnW~~IAk~~f~pgRT~kQCReRW~nirrr~ 169 (517)
+++++.||.||.++|+++|+ ++ -.-+|..|++. +..|+..|||..|..+..
T Consensus 433 ~~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~--~~TR~~~qCr~Kw~kl~~-- 508 (607)
T KOG0051|consen 433 KRNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEM--LGTRSRIQCRYKWYKLTT-- 508 (607)
T ss_pred ccccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHh--hcCCCcchHHHHHHHHHh--
Confidence 36899999999999999995 22 12469999996 899999999999998633
Q ss_pred ccccCCCCCCCCCCH-HHHHHHHHHHHh-hcCCCCCCchhHhhccCCCCC-CCCCccccCCCCCCC
Q 010139 170 GNVILGSNSSGSQLS-EAQLAARHAMSL-ALDMPVKNITASCTNTTAGTT-SSATMNNPVPSTANA 232 (517)
Q Consensus 170 ~~LdP~~IkkgpWT~-EED~~Lleav~~-al~~G~kk~Ws~IA~~LPGRT-dn~~IKNrWns~lr~ 232 (517)
.|. .+...|.. .+.--|++-+.. -+--.+...|..|+...||+. ..+ ++-+|..+...
T Consensus 509 ---~~s-~n~~~~~~~~~~v~l~ErL~dl~~~e~~~IDW~~l~~~~~g~~~~~e-~r~q~~~lk~~ 569 (607)
T KOG0051|consen 509 ---SPS-FNKRQESKGSDMVWLLERLSDLDLTEESPIDWKSLAEYAPGESTGEE-LRLQFERLKKK 569 (607)
T ss_pred ---hHH-hhcccccccchhHHHHHHHHhcccccCCccCHHHHHHhCCCCCcHHH-HHHHHHhHhhc
Confidence 333 45555553 122223333333 111233446999999999998 666 77777655444
No 24
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=97.01 E-value=0.00021 Score=59.42 Aligned_cols=58 Identities=29% Similarity=0.495 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHHHHH------cCC-C------Ccceeeccc--ccccCCchhhhhHHHhhhhccccccCC
Q 010139 118 RKPWTAEEDLELISAVQK------CGE-G------NWANILRGD--FKWDRTASQLSQRWNILRKKHGNVILG 175 (517)
Q Consensus 118 rg~WT~EEDe~Ll~lV~k------~G~-g------nW~~IAk~~--f~pgRT~kQCReRW~nirrr~~~LdP~ 175 (517)
|..||.+|...|+.++.. ++. + -|..||..+ ....|++.||+.||.+|+++...+.-.
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k~~ 73 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIKDR 73 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSSSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 468999999999999987 211 1 299999871 234899999999999997766655544
No 25
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=96.54 E-value=0.0011 Score=71.89 Aligned_cols=46 Identities=24% Similarity=0.450 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhh
Q 010139 117 KRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 165 (517)
Q Consensus 117 Krg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~ni 165 (517)
....||.+|-.+|+++|+.|| .+|.+||++ +.+|+.-||-.||.+|
T Consensus 278 ~dk~WS~qE~~LLLEGIe~yg-DdW~kVA~H--VgtKt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYG-DDWDKVARH--VGTKTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHhh-hhHHHHHHH--hCCCCHHHHHHHHHcC
Confidence 566999999999999999999 899999999 8999999999999873
No 26
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=96.15 E-value=0.0032 Score=51.62 Aligned_cols=45 Identities=29% Similarity=0.503 Sum_probs=31.5
Q ss_pred CCCCCHHHHHHHHHHHHHc---C---CCC--cceeecccccc-cCCchhhhhHHHh
Q 010139 118 RKPWTAEEDLELISAVQKC---G---EGN--WANILRGDFKW-DRTASQLSQRWNI 164 (517)
Q Consensus 118 rg~WT~EEDe~Ll~lV~k~---G---~gn--W~~IAk~~f~p-gRT~kQCReRW~n 164 (517)
|.++|.|||+.|++.|..+ | .|| |..+++. .+ .+|-..-|+||.+
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~--~~t~HtwQSwR~Ry~K 55 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEK--HPTRHTWQSWRDRYLK 55 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS---SSS--SHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHH--cCCCCCHHHHHHHHHH
Confidence 6789999999999999654 3 234 9999987 45 9999999999988
No 27
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=96.00 E-value=0.0054 Score=67.26 Aligned_cols=51 Identities=29% Similarity=0.445 Sum_probs=46.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhh
Q 010139 111 SMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 165 (517)
Q Consensus 111 sl~~rkKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~ni 165 (517)
++.+..++.-|+.|||++|+.+...+. ..|..|+.. -+|++.||-+||.++
T Consensus 52 ~ldp~i~~tews~eederlLhlakl~p-~qwrtIa~i---~gr~~~qc~eRy~~l 102 (617)
T KOG0050|consen 52 WLDPAIKKTEWSREEDERLLHLAKLEP-TQWRTIADI---MGRTSQQCLERYNNL 102 (617)
T ss_pred HhCHHHhhhhhhhhHHHHHHHHHHhcC-CccchHHHH---hhhhHHHHHHHHHHH
Confidence 467888999999999999999998887 889999975 499999999999987
No 28
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=95.87 E-value=0.005 Score=67.83 Aligned_cols=48 Identities=23% Similarity=0.444 Sum_probs=44.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhh
Q 010139 115 RKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 165 (517)
Q Consensus 115 rkKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~ni 165 (517)
-.-+..||.+|+-+|+++|++|| -+|.+|+.+ ...|+..||-.++.++
T Consensus 250 ~~~~~~WT~qE~lLLLE~ie~y~-ddW~kVa~h--Vg~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 250 ESARPNWTEQETLLLLEAIEMYG-DDWNKVADH--VGTKSQEQCILKFLRL 297 (506)
T ss_pred ccCCCCccHHHHHHHHHHHHHhc-ccHHHHHhc--cCCCCHHHHHHHHHhc
Confidence 34688999999999999999999 899999999 8899999999999983
No 29
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=95.74 E-value=0.0045 Score=60.89 Aligned_cols=114 Identities=17% Similarity=0.170 Sum_probs=79.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCCcceeecc-cccccCCchhhhhHHHhh----------hhccccccCCCC----CCCCCCH
Q 010139 120 PWTAEEDLELISAVQKCGEGNWANILRG-DFKWDRTASQLSQRWNIL----------RKKHGNVILGSN----SSGSQLS 184 (517)
Q Consensus 120 ~WT~EEDe~Ll~lV~k~G~gnW~~IAk~-~f~pgRT~kQCReRW~ni----------rrr~~~LdP~~I----kkgpWT~ 184 (517)
+|++++|-+|+.+|+.-. +-..|++. .|--.-|-.-+.+||+-+ +.+...|.|..+ .+-+||.
T Consensus 1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~ 78 (199)
T PF13325_consen 1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK 78 (199)
T ss_pred CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence 699999999999997654 55566655 344456788999999966 445667887632 5568999
Q ss_pred HHHHHHHHHHHhhcCCCCC-CchhHh-----hccCCCCCCCCCccccCCCCCCCCcccccc
Q 010139 185 EAQLAARHAMSLALDMPVK-NITASC-----TNTTAGTTSSATMNNPVPSTANAEASSVAN 239 (517)
Q Consensus 185 EED~~Lleav~~al~~G~k-k~Ws~I-----A~~LPGRTdn~~IKNrWns~lr~~~s~~q~ 239 (517)
+||++|...... .... ..+.+| +-|.++||... ..+||..+.+-...+-|.
T Consensus 79 ~EE~lL~~v~s~---~~p~le~Fq~LL~~n~~vFh~sRTak~-L~~HW~lmkqy~LL~DQ~ 135 (199)
T PF13325_consen 79 EEEQLLGTVASS---SQPSLETFQELLDKNRSVFHPSRTAKS-LQDHWRLMKQYHLLPDQS 135 (199)
T ss_pred HHHHHHHhhhhc---cCCcHHHHHHHHHhChhhhccccCHHH-HHHHHHHHHHhchhhccc
Confidence 999999775433 2111 124333 33568999999 999999766666554443
No 30
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=95.70 E-value=0.0098 Score=48.79 Aligned_cols=51 Identities=24% Similarity=0.403 Sum_probs=40.7
Q ss_pred CCCCCCHHHHHHHHHHHHHc-----CC-----------CCcceeecc---cccccCCchhhhhHHHhhhh
Q 010139 117 KRKPWTAEEDLELISAVQKC-----GE-----------GNWANILRG---DFKWDRTASQLSQRWNILRK 167 (517)
Q Consensus 117 Krg~WT~EEDe~Ll~lV~k~-----G~-----------gnW~~IAk~---~f~pgRT~kQCReRW~nirr 167 (517)
++..||.+|.+.|+++|.+| |. .-|..|+.. .+...|+..||+.+|.+|+.
T Consensus 1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~ 70 (78)
T PF13873_consen 1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKS 70 (78)
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999987 21 129999887 22348999999999999744
No 31
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=95.38 E-value=0.0068 Score=57.82 Aligned_cols=47 Identities=36% Similarity=0.599 Sum_probs=38.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCC-----cceeecccccccCCchhhhhHHHhhh
Q 010139 117 KRKPWTAEEDLELISAVQKCG-EGN-----WANILRGDFKWDRTASQLSQRWNILR 166 (517)
Q Consensus 117 Krg~WT~EEDe~Ll~lV~k~G-~gn-----W~~IAk~~f~pgRT~kQCReRW~nir 166 (517)
+...||.|||.+|-..|-+|= +|. ..++++. .+||+--|..||.-+.
T Consensus 3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~---L~RTsAACGFRWNs~V 55 (161)
T TIGR02894 3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRA---LNRTAAACGFRWNAYV 55 (161)
T ss_pred cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHH---HcccHHHhcchHHHHH
Confidence 567899999999999998872 222 7777776 3899999999999753
No 32
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=94.63 E-value=0.016 Score=60.70 Aligned_cols=46 Identities=26% Similarity=0.519 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhh
Q 010139 118 RKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 165 (517)
Q Consensus 118 rg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~ni 165 (517)
---|+..|+-+|+++.+..|.|||..||.+ ++.|+...|+++|.++
T Consensus 63 ~e~WgadEEllli~~~~TlGlGNW~dIady--iGsr~kee~k~HylK~ 108 (432)
T COG5114 63 EEGWGADEELLLIECLDTLGLGNWEDIADY--IGSRAKEEIKSHYLKM 108 (432)
T ss_pred CCCcCchHHHHHHHHHHhcCCCcHHHHHHH--HhhhhhHHHHHHHHHH
Confidence 346999999999999999999999999998 8899999999999974
No 33
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=91.83 E-value=0.06 Score=51.98 Aligned_cols=46 Identities=26% Similarity=0.409 Sum_probs=35.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCC------cceeecccccccCCchhhhhHHHh
Q 010139 116 KKRKPWTAEEDLELISAVQKCGEGN------WANILRGDFKWDRTASQLSQRWNI 164 (517)
Q Consensus 116 kKrg~WT~EEDe~Ll~lV~k~G~gn------W~~IAk~~f~pgRT~kQCReRW~n 164 (517)
.+...||.|||.+|-..|-+|+... ...++.. .+||..+|..||..
T Consensus 3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~---L~rt~aac~fRwNs 54 (170)
T PRK13923 3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDA---LKRTAAACGFRWNS 54 (170)
T ss_pred chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHH---HhhhHHHHHhHHHH
Confidence 3678999999999999888886433 3333333 48999999999976
No 34
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=91.79 E-value=0.077 Score=55.14 Aligned_cols=55 Identities=25% Similarity=0.487 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHHHc----CCCC-----cceeecc--cccccCCchhhhhHHHhhhhccccc
Q 010139 118 RKPWTAEEDLELISAVQKC----GEGN-----WANILRG--DFKWDRTASQLSQRWNILRKKHGNV 172 (517)
Q Consensus 118 rg~WT~EEDe~Ll~lV~k~----G~gn-----W~~IAk~--~f~pgRT~kQCReRW~nirrr~~~L 172 (517)
...|+.+|-..|+.+..+. ..++ |..||+. .....|++.||+.||.++++++...
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~ 119 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKE 119 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5899999999999988743 3333 9999984 2255899999999999986654443
No 35
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=90.96 E-value=0.089 Score=56.97 Aligned_cols=49 Identities=6% Similarity=-0.099 Sum_probs=43.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCchhHhhccCCCCCCCCCccccCCCCC
Q 010139 177 NSSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTA 230 (517)
Q Consensus 177 IkkgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LPGRTdn~~IKNrWns~l 230 (517)
|-...||.+|+.+|++++.. ||-. ||..||.++..||..+ ||.||..+.
T Consensus 70 i~~~~WtadEEilLLea~~t---~G~G-NW~dIA~hIGtKtkee-ck~hy~k~f 118 (438)
T KOG0457|consen 70 ILDPSWTADEEILLLEAAET---YGFG-NWQDIADHIGTKTKEE-CKEHYLKHF 118 (438)
T ss_pred CCCCCCChHHHHHHHHHHHH---hCCC-cHHHHHHHHcccchHH-HHHHHHHHH
Confidence 55667999999999999999 9988 8999999999899888 999987644
No 36
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=90.15 E-value=0.13 Score=41.15 Aligned_cols=43 Identities=5% Similarity=-0.122 Sum_probs=34.9
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCC-CCch---hHhhccCC-CC-CCCCCccccCC
Q 010139 179 SGSQLSEAQLAARHAMSLALDMPV-KNIT---ASCTNTTA-GT-TSSATMNNPVP 227 (517)
Q Consensus 179 kgpWT~EED~~Lleav~~al~~G~-kk~W---s~IA~~LP-GR-Tdn~~IKNrWn 227 (517)
+-.||+||.+..++++.. +|. . | ..|+..|. .| |..+ |+.|..
T Consensus 3 r~~WT~eeh~~Fl~ai~~---~G~g~--~a~pk~I~~~~~~~~lT~~q-V~SH~Q 51 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQK---LGGPD--WATPKRILELMVVDGLTRDQ-VASHLQ 51 (57)
T ss_pred CCCCCHHHHHHHHHHHHH---hCCCc--ccchHHHHHHcCCCCCCHHH-HHHHHH
Confidence 357999999999999999 998 6 9 99999884 33 7777 776654
No 37
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=90.07 E-value=0.13 Score=46.93 Aligned_cols=51 Identities=37% Similarity=0.538 Sum_probs=38.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCC---CCcceeecc----------cccccCCchhhhhHHHhh
Q 010139 115 RKKRKPWTAEEDLELISAVQKCGE---GNWANILRG----------DFKWDRTASQLSQRWNIL 165 (517)
Q Consensus 115 rkKrg~WT~EEDe~Ll~lV~k~G~---gnW~~IAk~----------~f~pgRT~kQCReRW~ni 165 (517)
..+++.||+|||.-|+-.+.+||. +.|..|-.. .|+..||+..+..|-..+
T Consensus 46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tL 109 (118)
T PF09111_consen 46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTL 109 (118)
T ss_dssp TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHH
Confidence 446889999999999999999999 889988543 235578888777776653
No 38
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=87.85 E-value=0.42 Score=40.16 Aligned_cols=48 Identities=31% Similarity=0.597 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHHHc---CC----CC-----cceeecc---cccccCCchhhhhHHHhhhh
Q 010139 120 PWTAEEDLELISAVQKC---GE----GN-----WANILRG---DFKWDRTASQLSQRWNILRK 167 (517)
Q Consensus 120 ~WT~EEDe~Ll~lV~k~---G~----gn-----W~~IAk~---~f~pgRT~kQCReRW~nirr 167 (517)
.||+++|+.|++++... |. +. |..|+.. .|....+..||+.||..+++
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~ 63 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK 63 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence 59999999999998543 21 22 7788776 22345678999999998655
No 39
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=87.43 E-value=0.095 Score=43.09 Aligned_cols=55 Identities=7% Similarity=-0.072 Sum_probs=32.6
Q ss_pred CCCCCHHHHHHHHHHHHhhcC----CCCCCchhHhhccCC-CCCCCCCccccCCCCCCCCc
Q 010139 179 SGSQLSEAQLAARHAMSLALD----MPVKNITASCTNTTA-GTTSSATMNNPVPSTANAEA 234 (517)
Q Consensus 179 kgpWT~EED~~Lleav~~al~----~G~kk~Ws~IA~~LP-GRTdn~~IKNrWns~lr~~~ 234 (517)
+.+||.|||.+|++.|...-. .+.++.|..++...| .+|=.. .++||...|++..
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQS-wR~Ry~K~L~~~~ 61 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQS-WRDRYLKHLRGRP 61 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHH-HHHHHHHHT----
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhccc
Confidence 458999999999999965221 223348999999988 676655 9999988777653
No 40
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=83.68 E-value=0.76 Score=45.55 Aligned_cols=54 Identities=20% Similarity=0.404 Sum_probs=42.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCC--CCcceeecc---cccccCCchhhhhHHHhhhhcc
Q 010139 116 KKRKPWTAEEDLELISAVQKCGE--GNWANILRG---DFKWDRTASQLSQRWNILRKKH 169 (517)
Q Consensus 116 kKrg~WT~EEDe~Ll~lV~k~G~--gnW~~IAk~---~f~pgRT~kQCReRW~nirrr~ 169 (517)
..+-+||.+|+++|......... ..+.+|-.. .|-+.||+++...+|+.|++.+
T Consensus 71 q~kalfS~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~ 129 (199)
T PF13325_consen 71 QSKALFSKEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYH 129 (199)
T ss_pred cccCCCCHHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhc
Confidence 46889999999999998765532 347777555 5678999999999999876543
No 41
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=83.36 E-value=0.27 Score=47.22 Aligned_cols=55 Identities=7% Similarity=-0.027 Sum_probs=41.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCC--chhHhhccCCCCCCCCCccccCCCCCCCC
Q 010139 177 NSSGSQLSEAQLAARHAMSLALDMPVKN--ITASCTNTTAGTTSSATMNNPVPSTANAE 233 (517)
Q Consensus 177 IkkgpWT~EED~~Lleav~~al~~G~kk--~Ws~IA~~LPGRTdn~~IKNrWns~lr~~ 233 (517)
.+.+.||.|||.+|-+.|-..+.-|..- ..-.++..| +||.-+ |.=|||+.+|++
T Consensus 2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAA-CGFRWNs~VRkq 58 (161)
T TIGR02894 2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAA-CGFRWNAYVRKQ 58 (161)
T ss_pred ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHH-hcchHHHHHHHH
Confidence 4567899999999988888855445431 244455544 899999 999999999987
No 42
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=82.97 E-value=1 Score=48.52 Aligned_cols=53 Identities=15% Similarity=0.182 Sum_probs=47.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhh
Q 010139 110 GSMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 165 (517)
Q Consensus 110 ~sl~~rkKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~ni 165 (517)
++..++++.-+||.+|-+++.++...+| .++..|+.. +|.|..+|++..|.+=
T Consensus 357 ~t~g~~~~~~~Ws~~e~ekFYKALs~wG-tdF~LIs~l--fP~R~RkqIKaKfi~E 409 (507)
T COG5118 357 STFGKKKGALRWSKKEIEKFYKALSIWG-TDFSLISSL--FPNRERKQIKAKFIKE 409 (507)
T ss_pred ccccCCCCCCcccHHHHHHHHHHHHHhc-chHHHHHHh--cCchhHHHHHHHHHHH
Confidence 4456777888999999999999999999 899999987 8999999999999863
No 43
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=77.80 E-value=5.1 Score=43.55 Aligned_cols=49 Identities=20% Similarity=0.312 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCcceeeccc----ccccCCchhhhhHHHhhhh
Q 010139 118 RKPWTAEEDLELISAVQKCGEGNWANILRGD----FKWDRTASQLSQRWNILRK 167 (517)
Q Consensus 118 rg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~----f~pgRT~kQCReRW~nirr 167 (517)
-..||.||-+.|.+++++|. -+|--|+..+ |...||--.+++||..+++
T Consensus 130 dn~WskeETD~LF~lck~fD-LRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r 182 (445)
T KOG2656|consen 130 DNSWSKEETDYLFDLCKRFD-LRFFVIADRYDNQQYKKSRTVEDLKERYYSVCR 182 (445)
T ss_pred cccccHHHHHHHHHHHHhcC-eeEEEEeeccchhhccccccHHHHHHHHHHHHH
Confidence 36799999999999999999 8999999874 5667999999999986644
No 44
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=76.83 E-value=2.4 Score=47.39 Aligned_cols=46 Identities=4% Similarity=-0.065 Sum_probs=39.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCchhHhhccCCCCCCCCCccccCCCC
Q 010139 178 SSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPST 229 (517)
Q Consensus 178 kkgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LPGRTdn~~IKNrWns~ 229 (517)
-++.||.+|..+|++++.+ ||.. |.+|+.+..+||-.+ |--+|-.+
T Consensus 252 ~~~~WT~qE~lLLLE~ie~---y~dd--W~kVa~hVg~ks~eq-CI~kFL~L 297 (506)
T KOG1279|consen 252 ARPNWTEQETLLLLEAIEM---YGDD--WNKVADHVGTKSQEQ-CILKFLRL 297 (506)
T ss_pred CCCCccHHHHHHHHHHHHH---hccc--HHHHHhccCCCCHHH-HHHHHHhc
Confidence 4568999999999999999 9999 999999999999877 65555443
No 45
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=74.09 E-value=2.6 Score=50.68 Aligned_cols=49 Identities=31% Similarity=0.458 Sum_probs=39.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCcceeecc----------cccccCCchhhhhHHHh
Q 010139 116 KKRKPWTAEEDLELISAVQKCGEGNWANILRG----------DFKWDRTASQLSQRWNI 164 (517)
Q Consensus 116 kKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~----------~f~pgRT~kQCReRW~n 164 (517)
.+++.||.|||..|+-.+.+||.++|..|-.. .|+..||+..+..|-..
T Consensus 924 ~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~ 982 (1033)
T PLN03142 924 NKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDT 982 (1033)
T ss_pred CCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHH
Confidence 35667999999999999999999999998332 33567888777777765
No 46
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=73.85 E-value=1.7 Score=48.04 Aligned_cols=44 Identities=5% Similarity=-0.105 Sum_probs=38.7
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCchhHhhccCCCCCCCCCccccCC
Q 010139 178 SSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVP 227 (517)
Q Consensus 178 kkgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LPGRTdn~~IKNrWn 227 (517)
....||.+|..+|++.+.+ ||.. |.+||.++..+|-.+ |-=||-
T Consensus 278 ~dk~WS~qE~~LLLEGIe~---ygDd--W~kVA~HVgtKt~Eq-CIl~FL 321 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEM---YGDD--WDKVARHVGTKTKEQ-CILHFL 321 (531)
T ss_pred ccccccHHHHHHHHHHHHH---hhhh--HHHHHHHhCCCCHHH-HHHHHH
Confidence 4458999999999999999 9999 999999999999877 665654
No 47
>PLN03162 golden-2 like transcription factor; Provisional
Probab=66.05 E-value=13 Score=40.39 Aligned_cols=72 Identities=17% Similarity=0.137 Sum_probs=51.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCC--cceeecccccccCCchhhhhHHHhhhhccccccCCCCCCCCCCH
Q 010139 113 PPRKKRKPWTAEEDLELISAVQKCGEGN--WANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLS 184 (517)
Q Consensus 113 ~~rkKrg~WT~EEDe~Ll~lV~k~G~gn--W~~IAk~~f~pgRT~kQCReRW~nirrr~~~LdP~~IkkgpWT~ 184 (517)
.+||.|-.||+|=.++++++|++.|..+ =+.|-+.+-+++=|..++..+.++||-....|-+..-..+.|+.
T Consensus 232 g~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~~rEaEa~swt~ 305 (526)
T PLN03162 232 GKKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLAAREAEAASWTH 305 (526)
T ss_pred CCCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccccchhhhhccchh
Confidence 4677889999999999999999999432 34555554467888889998888887655555554233455553
No 48
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=64.39 E-value=0.56 Score=38.83 Aligned_cols=51 Identities=6% Similarity=-0.109 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHHHHhh--cC-CC----CC--CchhHhhccC----CCCCCCCCccccCCCCCC
Q 010139 180 GSQLSEAQLAARHAMSLA--LD-MP----VK--NITASCTNTT----AGTTSSATMNNPVPSTAN 231 (517)
Q Consensus 180 gpWT~EED~~Lleav~~a--l~-~G----~k--k~Ws~IA~~L----PGRTdn~~IKNrWns~lr 231 (517)
..||.+|...||+++..- -. ++ .+ ..|..|+..| ..||..+ |+++|..+.+
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~q-c~~Kw~~L~~ 65 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQ-CRNKWKNLKK 65 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHH-HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHH
Confidence 479999999999998882 11 21 11 1599999998 4689999 9999987544
No 49
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=64.05 E-value=6.1 Score=33.76 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=13.3
Q ss_pred CCCCCCCCCHHHHHHH--------HHHHHHcC
Q 010139 114 PRKKRKPWTAEEDLEL--------ISAVQKCG 137 (517)
Q Consensus 114 ~rkKrg~WT~EEDe~L--------l~lV~k~G 137 (517)
|.-..|-||+|+|+.| .+++++||
T Consensus 43 P~n~~GiWT~eDD~~L~~~~~~~~~~L~~khG 74 (87)
T PF11626_consen 43 PDNMPGIWTPEDDEMLRSGDKDDIERLIKKHG 74 (87)
T ss_dssp -TT-TT---HHHHHHHTS--HHHHHHHHHHH-
T ss_pred CCCCCCCcCHHHHHHHHcCCHHHHHHHHHHhC
Confidence 3346889999999999 44555666
No 50
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=62.19 E-value=3.4 Score=43.91 Aligned_cols=46 Identities=2% Similarity=-0.023 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCchhHhhccCCCCCCCCCccccCCCC
Q 010139 179 SGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPST 229 (517)
Q Consensus 179 kgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LPGRTdn~~IKNrWns~ 229 (517)
-..|+.+|+.+|++.... +|-. ||..||.++..|+... ||.||..+
T Consensus 63 ~e~WgadEEllli~~~~T---lGlG-NW~dIadyiGsr~kee-~k~HylK~ 108 (432)
T COG5114 63 EEGWGADEELLLIECLDT---LGLG-NWEDIADYIGSRAKEE-IKSHYLKM 108 (432)
T ss_pred CCCcCchHHHHHHHHHHh---cCCC-cHHHHHHHHhhhhhHH-HHHHHHHH
Confidence 345999999999999999 8766 7999999999999999 99887653
No 51
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=51.49 E-value=11 Score=43.97 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHh
Q 010139 118 RKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNI 164 (517)
Q Consensus 118 rg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~n 164 (517)
-..||+.|-.++.+++-.|. +++..|++. +++.|-+||-+-|..
T Consensus 619 Sd~WTp~E~~lF~kA~y~~~-KDF~~v~km--~~~KtVaqCVeyYYt 662 (907)
T KOG4167|consen 619 SDKWTPLERKLFNKALYTYS-KDFIFVQKM--VKSKTVAQCVEYYYT 662 (907)
T ss_pred cccccHHHHHHHHHHHHHhc-ccHHHHHHH--hccccHHHHHHHHHH
Confidence 35899999999999999998 999999997 899999999987764
No 52
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=48.30 E-value=12 Score=41.44 Aligned_cols=58 Identities=21% Similarity=0.197 Sum_probs=49.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhhccccccC
Q 010139 114 PRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVIL 174 (517)
Q Consensus 114 ~rkKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirrr~~~LdP 174 (517)
+.-....||.||=-+|-.+.+.|| +++.+|-+. +|.|+-..+++-|...+|.+.+++-
T Consensus 183 r~~~~d~WT~Ed~vlFe~aF~~~G-K~F~kIrq~--LP~rsLaSlvqyYy~~KK~~~~~s~ 240 (534)
T KOG1194|consen 183 RTEFPDEWTAEDIVLFEQAFQFFG-KDFHKIRQA--LPHRSLASLVQYYYSWKKTREYDSQ 240 (534)
T ss_pred cCCCcccchHHHHHHHHHHHHHhc-ccHHHHHHH--ccCccHHHHHHHHHHHHHHhhHHHH
Confidence 334567899999999999999999 999999998 9999999999999987776666554
No 53
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=47.81 E-value=14 Score=34.21 Aligned_cols=42 Identities=10% Similarity=0.243 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhh
Q 010139 123 AEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRK 167 (517)
Q Consensus 123 ~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirr 167 (517)
.+-|.+|+.+.++.|.-.|.+||+. -|-+...|+.||.+|..
T Consensus 8 D~~D~~Il~~Lq~d~R~s~~eiA~~---lglS~~tV~~Ri~rL~~ 49 (153)
T PRK11179 8 DNLDRGILEALMENARTPYAELAKQ---FGVSPGTIHVRVEKMKQ 49 (153)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHH---HCcCHHHHHHHHHHHHH
Confidence 4679999999999999999999997 38999999999999733
No 54
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=46.08 E-value=5.6 Score=32.48 Aligned_cols=50 Identities=4% Similarity=-0.106 Sum_probs=34.4
Q ss_pred CCCCCHHHHHHHHHHHHhhcCC--CCC----------CchhHhhccC-----CCCCCCCCccccCCCC
Q 010139 179 SGSQLSEAQLAARHAMSLALDM--PVK----------NITASCTNTT-----AGTTSSATMNNPVPST 229 (517)
Q Consensus 179 kgpWT~EED~~Lleav~~al~~--G~k----------k~Ws~IA~~L-----PGRTdn~~IKNrWns~ 229 (517)
+..||.+|.+.|++++....++ +.. ..|..|+..| +.||..+ +|.+|..+
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~-lkkkW~nl 68 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQ-LKKKWKNL 68 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHH-HHHHHHHH
Confidence 4579999999999998883221 311 1699999887 2466566 77777643
No 55
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=45.07 E-value=2.8 Score=40.78 Aligned_cols=55 Identities=7% Similarity=-0.075 Sum_probs=36.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCC--chhHhhccCCCCCCCCCccccCCCCCCCC
Q 010139 177 NSSGSQLSEAQLAARHAMSLALDMPVKN--ITASCTNTTAGTTSSATMNNPVPSTANAE 233 (517)
Q Consensus 177 IkkgpWT~EED~~Lleav~~al~~G~kk--~Ws~IA~~LPGRTdn~~IKNrWns~lr~~ 233 (517)
.+.+.||.|||.+|-+.|-..+.-|... ....++.. -+||.-+ |.-|||+.++++
T Consensus 3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~-L~rt~aa-c~fRwNs~vrk~ 59 (170)
T PRK13923 3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDA-LKRTAAA-CGFRWNSVVRKQ 59 (170)
T ss_pred chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHH-HhhhHHH-HHhHHHHHHHHH
Confidence 4567899999999866666622222221 12222233 4789989 999999999976
No 56
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=44.58 E-value=25 Score=42.77 Aligned_cols=104 Identities=13% Similarity=0.111 Sum_probs=68.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhh-------HHHhh---------------------------
Q 010139 120 PWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQ-------RWNIL--------------------------- 165 (517)
Q Consensus 120 ~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCRe-------RW~ni--------------------------- 165 (517)
.|+.-+=..++.+..+||..+...||.. +.+.|...++. ||..|
T Consensus 826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~~--~~~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~ 903 (1033)
T PLN03142 826 TWSRRDFNAFIRACEKYGRNDIKSIASE--MEGKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAI 903 (1033)
T ss_pred cccHHHHHHHHHHHHHhCHhHHHHHHHH--hcCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777777788888888888888888876 66777666652 22111
Q ss_pred -hhcccc--------cc-CCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCchhHhhcc------------CCCCCCCCCcc
Q 010139 166 -RKKHGN--------VI-LGSNSSGSQLSEAQLAARHAMSLALDMPVKNITASCTNT------------TAGTTSSATMN 223 (517)
Q Consensus 166 -rrr~~~--------Ld-P~~IkkgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~------------LPGRTdn~~IK 223 (517)
.|...+ +. +. -++..||.|||+.|+-.+.+ ||.. +|-.|... |..||... |+
T Consensus 904 ~~k~~~~~~p~~~l~~~~~~-~~~~~~~~~~d~~~~~~~~~---~g~~-~~~~~~~~i~~~~~f~fd~~~~srt~~~-~~ 977 (1033)
T PLN03142 904 GKKLDRYKNPWLELKIQYGQ-NKGKLYNEECDRFMLCMVHK---LGYG-NWDELKAAFRTSPLFRFDWFVKSRTPQE-LA 977 (1033)
T ss_pred HHHHHHccCcHHHceeecCC-CCCCcCCHHHHHHHHHHHHH---hccc-hHHHHHHHHHhCCceeeehhhccCCHHH-HH
Confidence 000011 11 22 34567999999999998888 8865 49888443 24677766 66
Q ss_pred ccCCCCCC
Q 010139 224 NPVPSTAN 231 (517)
Q Consensus 224 NrWns~lr 231 (517)
.|.+++++
T Consensus 978 ~r~~~l~~ 985 (1033)
T PLN03142 978 RRCDTLIR 985 (1033)
T ss_pred HHHHHHHH
Confidence 66665443
No 57
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=43.86 E-value=6.7 Score=32.85 Aligned_cols=48 Identities=8% Similarity=-0.083 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCC--------chhHhhccCCCCCCCC----CccccCCC
Q 010139 181 SQLSEAQLAARHAMSLALDMPVKN--------ITASCTNTTAGTTSSA----TMNNPVPS 228 (517)
Q Consensus 181 pWT~EED~~Lleav~~al~~G~kk--------~Ws~IA~~LPGRTdn~----~IKNrWns 228 (517)
.||+++++.|++++...+.-|++. .|..|+..|-.++... +|||||..
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~ 60 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKT 60 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHH
Confidence 499999999999887755444441 5888988884444322 37888654
No 58
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=43.06 E-value=15 Score=27.63 Aligned_cols=39 Identities=21% Similarity=0.305 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhh
Q 010139 124 EEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 165 (517)
Q Consensus 124 EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~ni 165 (517)
+=|..|+...++.|...|..||+. -|=+...|+.|++.|
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~---lglS~~~v~~Ri~rL 41 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEE---LGLSESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHH---HTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHH---HCcCHHHHHHHHHHh
Confidence 458899999999998899999987 378999999999873
No 59
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=42.77 E-value=11 Score=46.32 Aligned_cols=31 Identities=29% Similarity=0.503 Sum_probs=27.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCcceeecc
Q 010139 117 KRKPWTAEEDLELISAVQKCGEGNWANILRG 147 (517)
Q Consensus 117 Krg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~ 147 (517)
.-.-|..+||..|+-+|-+||.|+|..|--.
T Consensus 1132 ~~~~W~~e~Ds~LLiGI~khGygswe~Ir~D 1162 (1373)
T KOG0384|consen 1132 WDCDWGSEDDSMLLIGIFKHGYGSWEAIRLD 1162 (1373)
T ss_pred cccCCCchhhhhHhhhhhhcccccHHHhccC
Confidence 3457999999999999999999999988644
No 60
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=40.55 E-value=31 Score=30.34 Aligned_cols=79 Identities=15% Similarity=0.246 Sum_probs=49.9
Q ss_pred CCCCCCHHHHHHHHHHHHHc----CCC---Ccceeecc---cccccCCchhhhhHHHhhhhccccccCCCCCCC---CCC
Q 010139 117 KRKPWTAEEDLELISAVQKC----GEG---NWANILRG---DFKWDRTASQLSQRWNILRKKHGNVILGSNSSG---SQL 183 (517)
Q Consensus 117 Krg~WT~EEDe~Ll~lV~k~----G~g---nW~~IAk~---~f~pgRT~kQCReRW~nirrr~~~LdP~~Ikkg---pWT 183 (517)
-.+.||+|++-.|++++-.| |.. +|..+-.. .+-..=+..|..+.-+.|++|....-.. +++| .++
T Consensus 3 ~qR~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky~~~~~k-~~~g~~~~~~ 81 (98)
T PF04504_consen 3 FQRLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKYRNAVKK-SKNGKDPSFS 81 (98)
T ss_pred CcCCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHhhh-cccCcCCCCC
Confidence 35679999999988887655 633 33332211 0011236678877777777766665554 4455 577
Q ss_pred HHHHHHHHHHHHh
Q 010139 184 SEAQLAARHAMSL 196 (517)
Q Consensus 184 ~EED~~Lleav~~ 196 (517)
..-|+.+.++-.+
T Consensus 82 ~~hd~~~f~Lsk~ 94 (98)
T PF04504_consen 82 KPHDRRLFELSKK 94 (98)
T ss_pred CHhHHHHHHHHHH
Confidence 7888888777665
No 61
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=39.71 E-value=15 Score=39.93 Aligned_cols=46 Identities=4% Similarity=-0.093 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCchhHhhccCCCCCCCCCccccCCCCCC
Q 010139 180 GSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTAN 231 (517)
Q Consensus 180 gpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LPGRTdn~~IKNrWns~lr 231 (517)
.+|+.+|-++..+++.+ +|.. ++.|+..||.|.-.+ ||-.|-.--+
T Consensus 366 ~~Ws~~e~ekFYKALs~---wGtd--F~LIs~lfP~R~Rkq-IKaKfi~Eek 411 (507)
T COG5118 366 LRWSKKEIEKFYKALSI---WGTD--FSLISSLFPNRERKQ-IKAKFIKEEK 411 (507)
T ss_pred CcccHHHHHHHHHHHHH---hcch--HHHHHHhcCchhHHH-HHHHHHHHhh
Confidence 48999999999999999 9999 999999999999999 9887755333
No 62
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=39.23 E-value=26 Score=33.51 Aligned_cols=37 Identities=16% Similarity=0.122 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCchhHhhccCCCCCCCCCccc
Q 010139 181 SQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNN 224 (517)
Q Consensus 181 pWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LPGRTdn~~IKN 224 (517)
.||+|+.+.|.++...++. -++|+..|.|.|-|+ |--
T Consensus 2 ~Wtde~~~~L~~lw~~G~S------asqIA~~lg~vsRnA-ViG 38 (162)
T PF07750_consen 2 SWTDERVERLRKLWAEGLS------ASQIARQLGGVSRNA-VIG 38 (162)
T ss_pred CCCHHHHHHHHHHHHcCCC------HHHHHHHhCCcchhh-hhh
Confidence 4999999999999988444 799999999899888 543
No 63
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=38.36 E-value=20 Score=33.62 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhh
Q 010139 123 AEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRK 167 (517)
Q Consensus 123 ~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirr 167 (517)
.+-|.+|+.+.++.|.-.|.+||+. -|-+...|+.||++|.+
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~---lglS~~tv~~Ri~rL~~ 54 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKR---VGLSPTPCLERVRRLER 54 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHH---HCcCHHHHHHHHHHHHH
Confidence 5679999999999999999999997 38899999999999844
No 64
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=36.10 E-value=36 Score=38.96 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=46.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhh
Q 010139 111 SMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 165 (517)
Q Consensus 111 sl~~rkKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~ni 165 (517)
++.++....+|+.+|-++.......+| -+...|+.. ++.|..+|.+..|.+=
T Consensus 402 t~sk~~~~~~w~~se~e~fyka~~~~g-s~~slis~l--~p~R~rk~iK~K~~~e 453 (584)
T KOG2009|consen 402 TYSKKLETDKWDASETELFYKALSERG-SDFSLISNL--FPLRDRKQIKAKFKKE 453 (584)
T ss_pred hccCccccCcccchhhHHhhhHHhhhc-ccccccccc--cccccHHHHHHHHhhh
Confidence 356777899999999999999999999 889999987 8999999999999863
No 65
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=34.46 E-value=47 Score=37.15 Aligned_cols=46 Identities=7% Similarity=-0.069 Sum_probs=37.7
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCchhHhhccCCCCCCCCCccccCCCC
Q 010139 178 SSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPST 229 (517)
Q Consensus 178 kkgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LPGRTdn~~IKNrWns~ 229 (517)
-.+.||.||--++-+++.. ||.. +.+|-+.||.|+=.. |.-+|+..
T Consensus 186 ~~d~WT~Ed~vlFe~aF~~---~GK~--F~kIrq~LP~rsLaS-lvqyYy~~ 231 (534)
T KOG1194|consen 186 FPDEWTAEDIVLFEQAFQF---FGKD--FHKIRQALPHRSLAS-LVQYYYSW 231 (534)
T ss_pred CcccchHHHHHHHHHHHHH---hccc--HHHHHHHccCccHHH-HHHHHHHH
Confidence 3458999998888899999 9999 999999999999655 55555543
No 66
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=32.00 E-value=50 Score=38.11 Aligned_cols=61 Identities=15% Similarity=0.377 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCcceeecccc--------cccCCchhhhhHHHhhhhcccccc--CCCCCCC
Q 010139 118 RKPWTAEEDLELISAVQKCGEGNWANILRGDF--------KWDRTASQLSQRWNILRKKHGNVI--LGSNSSG 180 (517)
Q Consensus 118 rg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f--------~pgRT~kQCReRW~nirrr~~~Ld--P~~Ikkg 180 (517)
|..||-.|..-+.++++++| +++..|-.... ....|-.|.|..|+++.++...+. |+ |.+.
T Consensus 88 ktaWt~~E~~~Ffdal~~~G-KdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~k~~F~~~-l~~d 158 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVG-KDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMNKLLFGPD-LSLD 158 (782)
T ss_pred ccccchhhHHHHHHHHHHhc-ccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHhhhcccc-cCcc
Confidence 77899999999999999999 89988821100 234677899999987644443333 44 5444
No 67
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=29.26 E-value=70 Score=30.37 Aligned_cols=48 Identities=19% Similarity=0.186 Sum_probs=38.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCcceeecc--cccccCCchhhhhHHHh
Q 010139 116 KKRKPWTAEEDLELISAVQKCGEGNWANILRG--DFKWDRTASQLSQRWNI 164 (517)
Q Consensus 116 kKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~--~f~pgRT~kQCReRW~n 164 (517)
.+...=|..|-.-|..+|++|| .++..+++. +-.-..|..||+.+...
T Consensus 112 ~~~~~ls~~e~~~i~~Li~KhG-dDy~aMarD~KLN~~Q~T~~qlrrki~~ 161 (164)
T PF09420_consen 112 KKPRRLSEREIEYIEYLIEKHG-DDYKAMARDRKLNYMQHTPGQLRRKIRK 161 (164)
T ss_pred cCCCCCCHHHHHHHHHHHHHHC-ccHHHHhccCCCCcccCCHHHHHHHHHH
Confidence 5778889999999999999999 888888876 11236788888888776
No 68
>smart00595 MADF subfamily of SANT domain.
Probab=28.91 E-value=16 Score=30.21 Aligned_cols=23 Identities=26% Similarity=0.617 Sum_probs=19.4
Q ss_pred cceeecccccccCCchhhhhHHHhhh
Q 010139 141 WANILRGDFKWDRTASQLSQRWNILR 166 (517)
Q Consensus 141 W~~IAk~~f~pgRT~kQCReRW~nir 166 (517)
|..|+.. + +-+..+|+.||.+|+
T Consensus 30 W~~Ia~~--l-~~~~~~~~~kw~~LR 52 (89)
T smart00595 30 WEEIAEE--L-GLSVEECKKRWKNLR 52 (89)
T ss_pred HHHHHHH--H-CcCHHHHHHHHHHHH
Confidence 9999987 4 449999999999873
No 69
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=26.05 E-value=11 Score=40.99 Aligned_cols=50 Identities=8% Similarity=-0.084 Sum_probs=42.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCchhHhhcc-----CCC-CCCCCCccccCCCCCCCC
Q 010139 178 SSGSQLSEAQLAARHAMSLALDMPVKNITASCTNT-----TAG-TTSSATMNNPVPSTANAE 233 (517)
Q Consensus 178 kkgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~-----LPG-RTdn~~IKNrWns~lr~~ 233 (517)
+...||.+|-+-|+++.+. |--+ |..|+.. ++. ||=.. +|.|||.+.++-
T Consensus 129 ~dn~WskeETD~LF~lck~---fDLR--f~VIaDRyd~qq~~~sRTvEd-LKeRyY~v~r~l 184 (445)
T KOG2656|consen 129 NDNSWSKEETDYLFDLCKR---FDLR--FFVIADRYDNQQYKKSRTVED-LKERYYSVCRKL 184 (445)
T ss_pred ccccccHHHHHHHHHHHHh---cCee--EEEEeeccchhhccccccHHH-HHHHHHHHHHHH
Confidence 3358999999999999999 9999 9999988 555 88888 999999876653
No 70
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=21.69 E-value=25 Score=28.21 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=18.9
Q ss_pred cceeecccccccCCchhhhhHHHhhh
Q 010139 141 WANILRGDFKWDRTASQLSQRWNILR 166 (517)
Q Consensus 141 W~~IAk~~f~pgRT~kQCReRW~nir 166 (517)
|..|+..+ ...-+..+|+.||.+|+
T Consensus 29 w~~Ia~~l-~~~~~~~~~~~~w~~Lr 53 (85)
T PF10545_consen 29 WQEIAREL-GKEFSVDDCKKRWKNLR 53 (85)
T ss_pred HHHHHHHH-ccchhHHHHHHHHHHHH
Confidence 88998872 22367889999999863
No 71
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=21.44 E-value=81 Score=34.56 Aligned_cols=44 Identities=16% Similarity=0.311 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHh
Q 010139 119 KPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNI 164 (517)
Q Consensus 119 g~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~n 164 (517)
--|+++|=..+-.+++.|| +++..|-+.. +..|+-.-|-.-|..
T Consensus 278 ~~wsEeEcr~FEegl~~yG-KDF~lIr~nk-vrtRsvgElVeyYYl 321 (445)
T KOG4329|consen 278 SGWSEEECRNFEEGLELYG-KDFHLIRANK-VRTRSVGELVEYYYL 321 (445)
T ss_pred ccCCHHHHHHHHHHHHHhc-ccHHHHHhcc-cccchHHHHHHHHHH
Confidence 4699999999999999999 9999998753 788999999988876
No 72
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=21.21 E-value=77 Score=29.06 Aligned_cols=34 Identities=6% Similarity=-0.162 Sum_probs=24.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCC--CCchhHhhccC
Q 010139 177 NSSGSQLSEAQLAARHAMSLALDMPV--KNITASCTNTT 213 (517)
Q Consensus 177 IkkgpWT~EED~~Lleav~~al~~G~--kk~Ws~IA~~L 213 (517)
-++..||.+||+.|+-.+.. +|- .++|-.|...+
T Consensus 47 ~~~k~yseeEDRfLl~~~~~---~G~~~~~~~e~Ik~~I 82 (118)
T PF09111_consen 47 NKKKVYSEEEDRFLLCMLYK---YGYDAEGNWEKIKQEI 82 (118)
T ss_dssp SS-SSS-HHHHHHHHHHHHH---HTTTSTTHHHHHHHHH
T ss_pred CCCCCcCcHHHHHHHHHHHH---hCCCCCchHHHHHHHH
Confidence 56678999999999988888 776 22588876543
No 73
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=20.24 E-value=3.5e+02 Score=24.18 Aligned_cols=94 Identities=13% Similarity=0.100 Sum_probs=51.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhhcccc--ccCCCCCCCCCC---H--HHHHH
Q 010139 117 KRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGN--VILGSNSSGSQL---S--EAQLA 189 (517)
Q Consensus 117 Krg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirrr~~~--LdP~~IkkgpWT---~--EED~~ 189 (517)
+++.||.|+=...+..+...| ..-..||+.+ --..+--.+|.+-.+.++. +.++ -...+=+ . +|-..
T Consensus 9 ~rr~ys~EfK~~aV~~~~~~g-~sv~evA~e~----gIs~~tl~~W~r~y~~~~~~~~~~~-~~~~~~~~~~~~~~ei~~ 82 (121)
T PRK09413 9 KRRRRTTQEKIAIVQQSFEPG-MTVSLVARQH----GVAASQLFLWRKQYQEGSLTAVAAG-EQVVPASELAAAMKQIKE 82 (121)
T ss_pred CCCCCCHHHHHHHHHHHHcCC-CCHHHHHHHH----CcCHHHHHHHHHHHhhccccccccc-ccCCchhHHHHHHHHHHH
Confidence 567899999877777776666 5667888762 2255666789864332211 1111 0000111 1 11111
Q ss_pred H----------HHHHHhhcCCCCCCchhHhhccCCCC
Q 010139 190 A----------RHAMSLALDMPVKNITASCTNTTAGT 216 (517)
Q Consensus 190 L----------leav~~al~~G~kk~Ws~IA~~LPGR 216 (517)
| .+.++.++.|...++|...+.++||-
T Consensus 83 L~~el~~L~~E~diLKKa~~~~~~~~~~~~~~~~~~~ 119 (121)
T PRK09413 83 LQRLLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGD 119 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCCC
Confidence 2 12334444466666899999999884
Done!