Query 010139
Match_columns 517
No_of_seqs 275 out of 1465
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 20:44:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010139.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010139hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 1.6E-30 5.3E-35 223.1 4.3 103 116-233 2-104 (105)
2 3zqc_A MYB3; transcription-DNA 100.0 1.1E-29 3.8E-34 226.6 7.5 104 118-236 2-105 (131)
3 1h8a_C AMV V-MYB, MYB transfor 100.0 7.1E-30 2.4E-34 226.5 5.6 107 112-233 21-127 (128)
4 2k9n_A MYB24; R2R3 domain, DNA 100.0 2.5E-30 8.6E-35 223.5 1.4 101 118-233 1-101 (107)
5 3osg_A MYB21; transcription-DN 100.0 8.9E-30 3E-34 226.1 2.5 109 113-237 6-114 (126)
6 1h89_C C-MYB, MYB proto-oncoge 99.9 4.5E-28 1.5E-32 221.9 5.8 107 112-233 52-158 (159)
7 1h89_C C-MYB, MYB proto-oncoge 99.9 1.2E-26 4.1E-31 212.5 1.6 104 116-233 4-107 (159)
8 2dim_A Cell division cycle 5-l 99.8 4.1E-21 1.4E-25 154.7 3.3 67 112-187 3-69 (70)
9 2juh_A Telomere binding protei 99.7 1.1E-18 3.8E-23 155.7 3.5 90 112-208 11-103 (121)
10 2roh_A RTBP1, telomere binding 99.7 7.5E-18 2.6E-22 150.6 4.9 87 112-203 25-114 (122)
11 1h8a_C AMV V-MYB, MYB transfor 99.7 1.2E-17 4E-22 148.1 1.4 76 144-233 1-76 (128)
12 1ity_A TRF1; helix-turn-helix, 99.6 6.8E-17 2.3E-21 129.8 4.5 63 112-183 4-68 (69)
13 3sjm_A Telomeric repeat-bindin 99.6 5.3E-17 1.8E-21 129.7 3.4 56 114-175 7-62 (64)
14 2d9a_A B-MYB, MYB-related prot 99.6 1.2E-16 4.1E-21 124.9 4.7 57 113-178 3-59 (60)
15 1gvd_A MYB proto-oncogene prot 99.6 1.4E-16 4.6E-21 121.3 4.4 51 117-175 2-52 (52)
16 1guu_A C-MYB, MYB proto-oncoge 99.6 1.8E-16 6.2E-21 120.4 3.4 51 117-175 2-52 (52)
17 1ign_A Protein (RAP1); RAP1,ye 99.6 1.6E-16 5.3E-21 155.7 1.2 110 114-233 4-200 (246)
18 2aje_A Telomere repeat-binding 99.6 1.5E-15 5.2E-20 132.6 7.0 84 111-196 6-92 (105)
19 1w0t_A Telomeric repeat bindin 99.6 8.2E-16 2.8E-20 117.6 3.7 49 117-167 1-51 (53)
20 2ckx_A NGTRF1, telomere bindin 99.5 3.4E-15 1.1E-19 125.3 5.4 76 119-196 1-79 (83)
21 1x41_A Transcriptional adaptor 99.5 4.4E-15 1.5E-19 116.5 3.7 54 114-175 4-57 (60)
22 2elk_A SPCC24B10.08C protein; 99.5 7.2E-15 2.5E-19 114.8 3.9 50 114-165 5-55 (58)
23 2din_A Cell division cycle 5-l 99.5 3.6E-15 1.2E-19 118.7 1.1 60 110-180 1-60 (66)
24 2llk_A Cyclin-D-binding MYB-li 99.5 4.2E-15 1.4E-19 122.1 -0.5 59 159-231 10-68 (73)
25 2yum_A ZZZ3 protein, zinc fing 99.4 2.7E-14 9.2E-19 116.1 2.2 59 113-180 3-66 (75)
26 2cu7_A KIAA1915 protein; nucle 99.4 4.2E-14 1.4E-18 114.5 2.8 54 111-167 2-55 (72)
27 2din_A Cell division cycle 5-l 99.3 4.5E-14 1.5E-18 112.3 -1.9 56 170-233 1-56 (66)
28 2llk_A Cyclin-D-binding MYB-li 99.3 5.8E-13 2E-17 109.3 4.2 53 111-167 16-68 (73)
29 2d9a_A B-MYB, MYB-related prot 99.3 2.5E-13 8.5E-18 106.0 1.7 56 173-235 3-59 (60)
30 2cu7_A KIAA1915 protein; nucle 99.3 9.4E-14 3.2E-18 112.5 -1.3 58 171-235 2-59 (72)
31 2yus_A SWI/SNF-related matrix- 99.3 1E-12 3.4E-17 109.1 4.0 47 116-165 16-62 (79)
32 3zqc_A MYB3; transcription-DNA 99.3 1.1E-12 3.8E-17 116.8 4.2 63 112-184 48-110 (131)
33 1guu_A C-MYB, MYB proto-oncoge 99.2 5E-13 1.7E-17 101.4 -0.7 51 177-233 1-52 (52)
34 1gvd_A MYB proto-oncogene prot 99.2 9.2E-13 3.1E-17 100.0 0.7 52 177-233 1-52 (52)
35 2ltp_A Nuclear receptor corepr 98.9 7.7E-13 2.6E-17 111.7 0.0 57 170-233 8-64 (89)
36 2ltp_A Nuclear receptor corepr 98.9 1.1E-12 3.8E-17 110.7 0.0 52 113-167 11-62 (89)
37 1gv2_A C-MYB, MYB proto-oncoge 99.2 8.4E-12 2.9E-16 106.6 4.6 53 112-167 50-102 (105)
38 3osg_A MYB21; transcription-DN 99.2 7.7E-12 2.6E-16 110.8 4.4 56 112-170 56-111 (126)
39 2dim_A Cell division cycle 5-l 99.2 4.5E-12 1.5E-16 101.8 1.8 58 171-235 2-60 (70)
40 2k9n_A MYB24; R2R3 domain, DNA 99.2 1.1E-11 3.7E-16 106.8 3.5 54 112-168 47-100 (107)
41 2cqr_A RSGI RUH-043, DNAJ homo 99.2 8.7E-12 3E-16 102.3 2.6 51 115-167 15-68 (73)
42 1x41_A Transcriptional adaptor 99.1 6.7E-12 2.3E-16 98.4 0.3 53 174-233 4-57 (60)
43 1x58_A Hypothetical protein 49 99.1 3E-11 1E-15 96.5 4.0 53 116-169 6-59 (62)
44 1ity_A TRF1; helix-turn-helix, 99.1 1.1E-11 3.7E-16 99.5 -0.6 58 171-235 3-63 (69)
45 1w0t_A Telomeric repeat bindin 99.0 1.3E-11 4.5E-16 94.2 -0.9 49 178-232 1-52 (53)
46 2yum_A ZZZ3 protein, zinc fing 99.0 7.8E-12 2.7E-16 101.5 -2.3 54 173-233 3-62 (75)
47 3sjm_A Telomeric repeat-bindin 99.0 2.3E-11 7.8E-16 97.1 -1.1 57 171-233 3-62 (64)
48 2elk_A SPCC24B10.08C protein; 99.0 5.1E-11 1.7E-15 93.0 0.1 51 172-229 3-55 (58)
49 2cjj_A Radialis; plant develop 99.0 1.9E-10 6.6E-15 98.3 2.9 48 117-166 7-57 (93)
50 2eqr_A N-COR1, N-COR, nuclear 98.9 1.1E-09 3.9E-14 86.2 4.8 55 110-167 4-58 (61)
51 2cqr_A RSGI RUH-043, DNAJ homo 98.9 1.5E-10 5.3E-15 94.9 -0.9 52 174-232 14-69 (73)
52 1ign_A Protein (RAP1); RAP1,ye 98.8 4.9E-10 1.7E-14 110.1 -0.2 55 177-235 6-64 (246)
53 2yus_A SWI/SNF-related matrix- 98.8 1.6E-09 5.5E-14 89.9 1.6 47 177-229 16-62 (79)
54 1x58_A Hypothetical protein 49 98.7 1.9E-09 6.4E-14 86.2 -0.6 51 177-233 6-59 (62)
55 2juh_A Telomere binding protei 98.6 2.5E-09 8.5E-14 95.5 -0.6 56 171-233 10-70 (121)
56 2aje_A Telomere repeat-binding 98.6 5.3E-09 1.8E-13 91.3 -0.2 56 173-235 8-68 (105)
57 2ckx_A NGTRF1, telomere bindin 98.6 2.9E-09 1E-13 89.3 -1.7 49 180-234 1-54 (83)
58 2cjj_A Radialis; plant develop 98.5 6.1E-09 2.1E-13 89.1 -1.3 49 178-232 7-59 (93)
59 2cqq_A RSGI RUH-037, DNAJ homo 98.4 1E-07 3.4E-12 78.0 3.6 50 116-168 6-58 (72)
60 2roh_A RTBP1, telomere binding 98.4 2.8E-08 9.6E-13 88.9 -1.2 51 177-233 29-84 (122)
61 2iw5_B Protein corest, REST co 98.4 1.7E-07 6E-12 91.5 3.8 50 115-167 130-179 (235)
62 2eqr_A N-COR1, N-COR, nuclear 98.2 1.4E-07 4.9E-12 74.2 0.3 48 178-231 11-58 (61)
63 1fex_A TRF2-interacting telome 98.2 3.2E-07 1.1E-11 72.2 2.3 45 118-164 2-55 (59)
64 1wgx_A KIAA1903 protein; MYB D 98.2 7.1E-07 2.4E-11 73.4 3.3 49 118-168 8-59 (73)
65 3hm5_A DNA methyltransferase 1 98.0 5.1E-07 1.7E-11 77.4 -1.1 63 153-232 15-82 (93)
66 2iw5_B Protein corest, REST co 97.9 1.1E-06 3.9E-11 85.8 -0.9 50 178-233 132-181 (235)
67 2cqq_A RSGI RUH-037, DNAJ homo 97.8 2.8E-06 9.5E-11 69.4 0.1 50 177-233 6-59 (72)
68 2yqk_A Arginine-glutamic acid 97.7 4.2E-05 1.4E-09 60.6 5.1 54 112-167 3-56 (63)
69 2xag_B REST corepressor 1; ami 97.6 5.8E-06 2E-10 88.3 -0.9 48 179-232 380-427 (482)
70 4eef_G F-HB80.4, designed hema 97.6 1.5E-05 5E-10 65.7 1.2 46 117-164 19-67 (74)
71 2xag_B REST corepressor 1; ami 97.5 3.2E-05 1.1E-09 82.7 3.4 49 116-167 378-426 (482)
72 3hm5_A DNA methyltransferase 1 97.5 3.4E-05 1.2E-09 66.1 1.9 52 118-170 30-84 (93)
73 2ebi_A DNA binding protein GT- 97.5 2E-05 6.8E-10 65.2 0.3 60 115-174 1-71 (86)
74 1wgx_A KIAA1903 protein; MYB D 97.3 8.7E-05 3E-09 61.0 2.1 54 178-235 7-62 (73)
75 2lr8_A CAsp8-associated protei 96.3 5.7E-05 1.9E-09 61.5 0.0 46 181-231 16-62 (70)
76 2crg_A Metastasis associated p 97.1 0.00051 1.8E-08 55.5 4.6 56 115-172 5-60 (70)
77 4a69_C Nuclear receptor corepr 97.0 0.00045 1.5E-08 58.9 3.5 49 116-167 41-89 (94)
78 1ug2_A 2610100B20RIK gene prod 96.8 0.0019 6.7E-08 55.2 5.8 49 115-165 30-80 (95)
79 1fex_A TRF2-interacting telome 96.7 0.00022 7.6E-09 56.0 -0.1 51 179-231 2-58 (59)
80 1ug2_A 2610100B20RIK gene prod 96.6 0.00014 4.9E-09 62.1 -2.2 47 181-231 35-82 (95)
81 1ofc_X ISWI protein; nuclear p 96.5 0.00058 2E-08 69.3 1.0 106 119-231 111-274 (304)
82 4eef_G F-HB80.4, designed hema 96.5 0.0003 1E-08 58.0 -1.0 43 179-227 20-66 (74)
83 2lr8_A CAsp8-associated protei 95.5 0.00045 1.5E-08 56.2 0.0 46 117-165 13-60 (70)
84 2yqk_A Arginine-glutamic acid 96.4 0.0011 3.8E-08 52.4 1.7 50 172-228 3-53 (63)
85 1irz_A ARR10-B; helix-turn-hel 95.9 0.0057 2E-07 49.1 3.7 55 113-167 2-58 (64)
86 4iej_A DNA methyltransferase 1 95.2 0.01 3.4E-07 50.9 2.9 49 119-168 31-82 (93)
87 4b4c_A Chromodomain-helicase-D 95.1 0.016 5.6E-07 54.4 4.4 47 114-160 3-51 (211)
88 4a69_C Nuclear receptor corepr 94.5 0.033 1.1E-06 47.3 4.4 42 180-227 44-85 (94)
89 4b4c_A Chromodomain-helicase-D 94.2 0.024 8.2E-07 53.2 3.3 31 117-147 133-163 (211)
90 2crg_A Metastasis associated p 94.0 0.012 4.2E-07 47.4 0.7 43 179-227 8-51 (70)
91 1ofc_X ISWI protein; nuclear p 93.5 0.021 7.3E-07 58.0 1.5 49 117-165 211-272 (304)
92 2xb0_X Chromo domain-containin 93.5 0.027 9.3E-07 56.3 2.2 29 119-147 169-197 (270)
93 4iej_A DNA methyltransferase 1 93.1 0.0095 3.3E-07 51.1 -1.5 47 180-232 31-82 (93)
94 2y9y_A Imitation switch protei 88.7 0.21 7E-06 52.1 3.0 48 117-164 227-287 (374)
95 2y9y_A Imitation switch protei 79.2 4.6 0.00016 42.2 7.9 106 119-231 124-290 (374)
96 2xb0_X Chromo domain-containin 75.8 6.9 0.00024 39.0 7.9 31 117-147 2-34 (270)
97 2ebi_A DNA binding protein GT- 62.6 0.23 8E-06 40.6 -5.0 52 179-231 4-64 (86)
98 1irz_A ARR10-B; helix-turn-hel 36.0 7.3 0.00025 31.1 -0.1 45 178-226 6-53 (64)
99 2rq5_A Protein jumonji; develo 26.6 25 0.00087 30.9 1.7 60 127-196 45-114 (121)
100 3cz6_A DNA-binding protein RAP 26.1 47 0.0016 31.1 3.5 24 114-137 110-141 (168)
101 3i4p_A Transcriptional regulat 22.7 36 0.0012 30.1 2.0 49 124-175 3-57 (162)
102 2jvw_A Uncharacterized protein 21.6 14 0.00048 31.2 -0.9 45 126-190 18-68 (88)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.96 E-value=1.6e-30 Score=223.06 Aligned_cols=103 Identities=26% Similarity=0.317 Sum_probs=97.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhhccccccCCCCCCCCCCHHHHHHHHHHHH
Q 010139 116 KKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAMS 195 (517)
Q Consensus 116 kKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirrr~~~LdP~~IkkgpWT~EED~~Lleav~ 195 (517)
.++++||+|||++|+++|++||.++|..||.. +++|+++||++||.+ +|+|. +++++||.|||++|+++|.
T Consensus 2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~--l~~Rt~~qcr~Rw~~------~l~p~-~~~~~Wt~eEd~~L~~~~~ 72 (105)
T 1gv2_A 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKH--LKGRIGKQCRERWHN------HLNPE-VKKTSWTEEEDRIIYQAHK 72 (105)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTT--STTCCHHHHHHHHHH------TTCCC-CCCCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhh--hcCCCHHHHHHHHHh------ccCCc-ccccCCCHHHHHHHHHHHH
Confidence 47899999999999999999998899999987 899999999999999 99999 9999999999999999999
Q ss_pred hhcCCCCCCchhHhhccCCCCCCCCCccccCCCCCCCC
Q 010139 196 LALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAE 233 (517)
Q Consensus 196 ~al~~G~kk~Ws~IA~~LPGRTdn~~IKNrWns~lr~~ 233 (517)
. ||++ |..|+.+|||||+++ |||||+.+++++
T Consensus 73 ~---~G~~--W~~Ia~~l~gRt~~~-~k~rw~~~~~~~ 104 (105)
T 1gv2_A 73 R---LGNR--WAEIAKLLPGRTDNA-IKNHWNSTMRRK 104 (105)
T ss_dssp H---HSSC--HHHHHTTCTTCCHHH-HHHHHHHHTC--
T ss_pred H---hCCC--HHHHHHHcCCCCHHH-HHHHHHHHHhcc
Confidence 9 9999 999999999999999 999999988875
No 2
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.96 E-value=1.1e-29 Score=226.64 Aligned_cols=104 Identities=20% Similarity=0.205 Sum_probs=100.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhhccccccCCCCCCCCCCHHHHHHHHHHHHhh
Q 010139 118 RKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAMSLA 197 (517)
Q Consensus 118 rg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirrr~~~LdP~~IkkgpWT~EED~~Lleav~~a 197 (517)
||+||+|||++|+.+|.+||.++|..||.. +++|+++|||+||.+ +|+|. +++++||.|||++|+++|..
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~--~~~Rt~~qcr~Rw~~------~l~p~-~~~~~Wt~eEd~~L~~~~~~- 71 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSF--LPNRSPKQCRERWFN------HLDPA-VVKHAWTPEEDETIFRNYLK- 71 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTS--CTTSCHHHHHHHHHH------HTSTT-CCCSCCCHHHHHHHHHHHHH-
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHH--HCCCCHHHHHHHHhh------ccCcc-ccCCCCCHHHHHHHHHHHHH-
Confidence 789999999999999999999999999987 899999999999999 99999 99999999999999999999
Q ss_pred cCCCCCCchhHhhccCCCCCCCCCccccCCCCCCCCccc
Q 010139 198 LDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAEASS 236 (517)
Q Consensus 198 l~~G~kk~Ws~IA~~LPGRTdn~~IKNrWns~lr~~~s~ 236 (517)
||.+ |+.||.+|||||+++ |||||+.++++....
T Consensus 72 --~G~~--W~~Ia~~l~gRt~~~-~k~rw~~~l~~~~~~ 105 (131)
T 3zqc_A 72 --LGSK--WSVIAKLIPGRTDNA-IKNRWNSSISKRIST 105 (131)
T ss_dssp --SCSC--HHHHTTTSTTCCHHH-HHHHHHHTTGGGCCC
T ss_pred --HCcC--HHHHHHHcCCCCHHH-HHHHHHHHHHHHhhc
Confidence 9999 999999999999999 999999999998653
No 3
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.96 E-value=7.1e-30 Score=226.53 Aligned_cols=107 Identities=26% Similarity=0.358 Sum_probs=101.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhhccccccCCCCCCCCCCHHHHHHHH
Q 010139 112 MPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAAR 191 (517)
Q Consensus 112 l~~rkKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirrr~~~LdP~~IkkgpWT~EED~~Ll 191 (517)
+.+..++++||+|||++|+++|++||.++|..||.. +++|+++||++||.+ +|+|. +++++||.|||++|+
T Consensus 21 l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~--l~~Rt~~qcr~Rw~~------~l~p~-~~~~~WT~eEd~~L~ 91 (128)
T 1h8a_C 21 LNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKH--LKGRIGKQCRERWHN------HLNPE-VKKTSWTEEEDRIIY 91 (128)
T ss_dssp -CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHH--SSSCCHHHHHHHHHH------TTCSS-SCCSCCCHHHHHHHH
T ss_pred hCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH--hcCCcHHHHHHHHHH------hcccc-cccccCCHHHHHHHH
Confidence 577789999999999999999999998899999987 899999999999999 99999 999999999999999
Q ss_pred HHHHhhcCCCCCCchhHhhccCCCCCCCCCccccCCCCCCCC
Q 010139 192 HAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAE 233 (517)
Q Consensus 192 eav~~al~~G~kk~Ws~IA~~LPGRTdn~~IKNrWns~lr~~ 233 (517)
++|.. ||++ |+.||.+|||||+++ |||||+.+++++
T Consensus 92 ~~~~~---~G~~--W~~Ia~~l~gRt~~~-~k~r~~~~~~~~ 127 (128)
T 1h8a_C 92 QAHKR---LGNR--WAEIAKLLPGRTDNA-VKNHWNSTMRRK 127 (128)
T ss_dssp HHHHH---HCSC--HHHHGGGSTTCCHHH-HHHHHHTTTTC-
T ss_pred HHHHH---HCcC--HHHHHHHCCCCCHHH-HHHHHHHHHhcc
Confidence 99999 9999 999999999999999 999999999875
No 4
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.95 E-value=2.5e-30 Score=223.55 Aligned_cols=101 Identities=19% Similarity=0.221 Sum_probs=97.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhhccccccCCCCCCCCCCHHHHHHHHHHHHhh
Q 010139 118 RKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAMSLA 197 (517)
Q Consensus 118 rg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirrr~~~LdP~~IkkgpWT~EED~~Lleav~~a 197 (517)
|++||+|||++|+.+|++||.++|..||.. +++||++||++||.+ +|+|+ +++++||.|||++|+++|..
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~--~~~Rt~~qcr~Rw~~------~L~p~-i~~~~WT~eEd~~L~~~~~~- 70 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQL--MITRNPRQCRERWNN------YINPA-LRTDPWSPEEDMLLDQKYAE- 70 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHH--TTTSCHHHHHHHHHH------HSSSC-CTTCCCCHHHHHHHHHHHHH-
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhh--cCCCCHHHHHHHHHH------HHccc-ccccccCHHHHHHHHHHHHH-
Confidence 589999999999999999998899999987 899999999999999 99999 99999999999999999999
Q ss_pred cCCCCCCchhHhhccCCCCCCCCCccccCCCCCCCC
Q 010139 198 LDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAE 233 (517)
Q Consensus 198 l~~G~kk~Ws~IA~~LPGRTdn~~IKNrWns~lr~~ 233 (517)
||++ |..||.+|||||+++ |||||+.++++.
T Consensus 71 --~G~~--W~~Ia~~l~gRt~~~-~k~rw~~l~r~~ 101 (107)
T 2k9n_A 71 --YGPK--WNKISKFLKNRSDNN-IRNRWMMIARHR 101 (107)
T ss_dssp --TCSC--HHHHHHHHSSSCHHH-HHHHHHHHHHHH
T ss_pred --hCcC--HHHHHHHCCCCCHHH-HHHHHHHHHhhH
Confidence 9999 999999999999999 999999887764
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.95 E-value=8.9e-30 Score=226.12 Aligned_cols=109 Identities=21% Similarity=0.181 Sum_probs=101.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhhccccccCCCCCCCCCCHHHHHHHHH
Q 010139 113 PPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARH 192 (517)
Q Consensus 113 ~~rkKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirrr~~~LdP~~IkkgpWT~EED~~Lle 192 (517)
.+..++++||+|||++|+.+|++||. +|..||.. +++|+++|||+||.+ +|+|. +++++||.|||++|++
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~--~~~Rt~~qcr~Rw~~------~l~p~-~~~~~WT~eEd~~L~~ 75 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAAT--FPNRNARQCRDRWKN------YLAPS-ISHTPWTAEEDALLVQ 75 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHT--CTTCCHHHHHHHHHH------HTSTT-SCCSCCCHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHH--cCCCCHHHHHHHHhh------hcccc-cccccCCHHHHHHHHH
Confidence 45678999999999999999999996 99999987 899999999999999 99999 9999999999999999
Q ss_pred HHHhhcCCCCCCchhHhhccCCCCCCCCCccccCCCCCCCCcccc
Q 010139 193 AMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAEASSV 237 (517)
Q Consensus 193 av~~al~~G~kk~Ws~IA~~LPGRTdn~~IKNrWns~lr~~~s~~ 237 (517)
+|.. ||.+ |..|+.+|||||+++ |||||+.++++-..|.
T Consensus 76 ~v~~---~G~~--W~~Ia~~l~gRt~~~-~k~rw~~l~~k~~~p~ 114 (126)
T 3osg_A 76 KIQE---YGRQ--WAIIAKFFPGRTDIH-IKNRWVTISNKLGIPQ 114 (126)
T ss_dssp HHHH---HCSC--HHHHHTTSTTCCHHH-HHHHHHHHHHHTTC--
T ss_pred HHHH---HCcC--HHHHHHHcCCCCHHH-HHHHHHHHHHhcCCCC
Confidence 9999 9999 999999999999999 9999999988875543
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.94 E-value=4.5e-28 Score=221.93 Aligned_cols=107 Identities=26% Similarity=0.336 Sum_probs=102.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhhccccccCCCCCCCCCCHHHHHHHH
Q 010139 112 MPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAAR 191 (517)
Q Consensus 112 l~~rkKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirrr~~~LdP~~IkkgpWT~EED~~Ll 191 (517)
+.+..++++||+|||++|+.+|++||.++|..||.. +++||++||++||.+ +|+|. +++++||.|||++|+
T Consensus 52 l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~--l~~Rt~~qcr~Rw~~------~l~p~-~~~~~WT~eEd~~L~ 122 (159)
T 1h89_C 52 LNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKH--LKGRIGKQCRERWHN------HLNPE-VKKTSWTEEEDRIIY 122 (159)
T ss_dssp TCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHT--STTCCHHHHHHHHHH------TTCTT-SCCSCCCHHHHHHHH
T ss_pred cCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHH--cCCCCHHHHHHHHHH------HhCcc-ccccCCChHHHHHHH
Confidence 567778999999999999999999998899999987 899999999999999 99999 999999999999999
Q ss_pred HHHHhhcCCCCCCchhHhhccCCCCCCCCCccccCCCCCCCC
Q 010139 192 HAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAE 233 (517)
Q Consensus 192 eav~~al~~G~kk~Ws~IA~~LPGRTdn~~IKNrWns~lr~~ 233 (517)
+++.. ||++ |+.||++|||||+++ |||||+.+++++
T Consensus 123 ~~~~~---~g~~--W~~Ia~~l~gRt~~~-~knr~~~~~r~~ 158 (159)
T 1h89_C 123 QAHKR---LGNR--WAEIAKLLPGRTDNA-IKNHWNSTMRRK 158 (159)
T ss_dssp HHHHH---HCSC--HHHHHTTSTTCCHHH-HHHHHHTTTCC-
T ss_pred HHHHH---HCCC--HHHHHHHCCCCCHHH-HHHHHHHHHhcc
Confidence 99999 9999 999999999999999 999999999875
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.92 E-value=1.2e-26 Score=212.46 Aligned_cols=104 Identities=20% Similarity=0.205 Sum_probs=61.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhhccccccCCCCCCCCCCHHHHHHHHHHHH
Q 010139 116 KKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAMS 195 (517)
Q Consensus 116 kKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirrr~~~LdP~~IkkgpWT~EED~~Lleav~ 195 (517)
.++++||+|||++|+++|++||.++|..||.. +++|+++||++||.+ +|+|. +++++||.|||++|+++|.
T Consensus 4 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~--l~~Rt~~qcr~Rw~~------~l~p~-~~~~~Wt~eEd~~L~~~v~ 74 (159)
T 1h89_C 4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANY--LPNRTDVQCQHRWQK------VLNPE-LIKGPWTKEEDQRVIKLVQ 74 (159)
T ss_dssp -----------------------------------------CHHHHHHT------TTCTT-CCCSCCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHH--cCCCCHHHHHHHHHH------ccCCC-cCCCCCChHHHHHHHHHHH
Confidence 36899999999999999999999999999987 899999999999999 99999 9999999999999999999
Q ss_pred hhcCCCCCCchhHhhccCCCCCCCCCccccCCCCCCCC
Q 010139 196 LALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAE 233 (517)
Q Consensus 196 ~al~~G~kk~Ws~IA~~LPGRTdn~~IKNrWns~lr~~ 233 (517)
. ||.+ +|..||.+|||||+.+ |++||+.+|++.
T Consensus 75 ~---~g~~-~W~~Ia~~l~~Rt~~q-cr~Rw~~~l~p~ 107 (159)
T 1h89_C 75 K---YGPK-RWSVIAKHLKGRIGKQ-CRERWHNHLNPE 107 (159)
T ss_dssp H---HCSC-CHHHHHHTSTTCCHHH-HHHHHHHTTCTT
T ss_pred H---hCcc-cHHHHHHHcCCCCHHH-HHHHHHHHhCcc
Confidence 9 9962 3999999999999999 999999998765
No 8
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=4.1e-21 Score=154.69 Aligned_cols=67 Identities=22% Similarity=0.250 Sum_probs=63.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhhccccccCCCCCCCCCCHHHH
Q 010139 112 MPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQ 187 (517)
Q Consensus 112 l~~rkKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirrr~~~LdP~~IkkgpWT~EED 187 (517)
..+..++++||+|||++|+++|++||.++|..||.. +++||++|||+||.+ +|+|. |++++||.|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~--l~~Rt~~qcr~Rw~~------~L~p~-i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASL--LHRKSAKQCKARWYE------WLDPS-IKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHH--STTCCHHHHHHHHHH------TSCSS-SCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHH--hcCCCHHHHHHHHHH------HcCCc-ccCCCCChHhc
Confidence 356778999999999999999999999999999997 899999999999999 99999 99999999987
No 9
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.72 E-value=1.1e-18 Score=155.72 Aligned_cols=90 Identities=20% Similarity=0.363 Sum_probs=80.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCcceeecccc--cccCCchhhhhHHHhhhhccccccCCCCCCC-CCCHHHHH
Q 010139 112 MPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDF--KWDRTASQLSQRWNILRKKHGNVILGSNSSG-SQLSEAQL 188 (517)
Q Consensus 112 l~~rkKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f--~pgRT~kQCReRW~nirrr~~~LdP~~Ikkg-pWT~EED~ 188 (517)
+..++++++||+|||+.|+++|++||.|+|..|++.+| +++||+.||++||+++.++ ..+.|+ ++++ +|+.||+.
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~-~~~~p~-~krg~~~p~e~~~ 88 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT-ASIAPQ-QRRGEPVPQDLLD 88 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH-HHTCST-TCCCSCCCHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh-hccCCc-ccCCCCCCHHHHH
Confidence 46788999999999999999999999999999999732 4899999999999997654 456799 9999 99999999
Q ss_pred HHHHHHHhhcCCCCCCchhH
Q 010139 189 AARHAMSLALDMPVKNITAS 208 (517)
Q Consensus 189 ~Lleav~~al~~G~kk~Ws~ 208 (517)
+|++++.. +|++ |++
T Consensus 89 rv~~~h~~---~gn~--~~~ 103 (121)
T 2juh_A 89 RVLAAHAY---WSQQ--QGK 103 (121)
T ss_dssp HHHHHHHH---HHHH--HCC
T ss_pred HHHHHHHH---Hccc--hhc
Confidence 99999999 9999 876
No 10
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.69 E-value=7.5e-18 Score=150.60 Aligned_cols=87 Identities=23% Similarity=0.396 Sum_probs=76.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCcceeecccc--cccCCchhhhhHHHhhhhccccccCCCCCCCCCCHHH-HH
Q 010139 112 MPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDF--KWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEA-QL 188 (517)
Q Consensus 112 l~~rkKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f--~pgRT~kQCReRW~nirrr~~~LdP~~IkkgpWT~EE-D~ 188 (517)
...++++++||+|||+.|+++|++||.|+|..|++.+| +++||+.||++||+++.|.. .++|+ ++++.|+++| ++
T Consensus 25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~-~~~p~-~kr~~~~p~e~~~ 102 (122)
T 2roh_A 25 FGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA-SIAPQ-QRRGAPVPQELLD 102 (122)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH-HSCTT-TCCCSSCCHHHHH
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc-cCCcc-ccCCCCCCHHHHH
Confidence 35678899999999999999999999999999999732 58999999999999966533 45999 9999999999 78
Q ss_pred HHHHHHHhhcCCCCC
Q 010139 189 AARHAMSLALDMPVK 203 (517)
Q Consensus 189 ~Lleav~~al~~G~k 203 (517)
+|++++.. +|++
T Consensus 103 ~v~~~h~~---~g~~ 114 (122)
T 2roh_A 103 RVLAAQAY---WSVD 114 (122)
T ss_dssp HHHHHHHH---HHSS
T ss_pred HHHHHHHH---HhhH
Confidence 89999999 8776
No 11
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.66 E-value=1.2e-17 Score=148.09 Aligned_cols=76 Identities=14% Similarity=0.068 Sum_probs=51.6
Q ss_pred eecccccccCCchhhhhHHHhhhhccccccCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCchhHhhccCCCCCCCCCcc
Q 010139 144 ILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMN 223 (517)
Q Consensus 144 IAk~~f~pgRT~kQCReRW~nirrr~~~LdP~~IkkgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LPGRTdn~~IK 223 (517)
||+. +++||++||++||.+ +|+|+ +++++||.|||++|+++|.. ||.+ +|..||.+|||||+.+ |+
T Consensus 1 Ia~~--~~~Rt~~qC~~Rw~~------~l~p~-~~k~~Wt~eED~~L~~~v~~---~g~~-~W~~Ia~~l~~Rt~~q-cr 66 (128)
T 1h8a_C 1 MEAV--IKNRTDVQCQHRWQK------VLNPE-LNKGPWTKEEDQRVIEHVQK---YGPK-RWSDIAKHLKGRIGKQ-CR 66 (128)
T ss_dssp -----------------------------CTT-CCCSCCCHHHHHHHHHHHHH---TCSC-CHHHHHHHSSSCCHHH-HH
T ss_pred Cccc--cCCCCHHHHHHHHHH------hhCCC-CCCCCCCHHHHHHHHHHHHH---HCCC-CHHHHHHHhcCCcHHH-HH
Confidence 6765 899999999999999 99999 99999999999999999999 9963 3999999999999999 99
Q ss_pred ccCCCCCCCC
Q 010139 224 NPVPSTANAE 233 (517)
Q Consensus 224 NrWns~lr~~ 233 (517)
+||..+|++.
T Consensus 67 ~Rw~~~l~p~ 76 (128)
T 1h8a_C 67 ERWHNHLNPE 76 (128)
T ss_dssp HHHHHTTCSS
T ss_pred HHHHHhcccc
Confidence 9999998875
No 12
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.65 E-value=6.8e-17 Score=129.82 Aligned_cols=63 Identities=38% Similarity=0.533 Sum_probs=57.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccc--cCCchhhhhHHHhhhhccccccCCCCCCCCCC
Q 010139 112 MPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKW--DRTASQLSQRWNILRKKHGNVILGSNSSGSQL 183 (517)
Q Consensus 112 l~~rkKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~p--gRT~kQCReRW~nirrr~~~LdP~~IkkgpWT 183 (517)
..+++++++||+|||++|+.+|++||.++|..||.. ++ +||+.|||+||++ +|+|. |.++.+.
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~--~~~~~Rt~~qcr~Rw~~------~l~p~-i~k~~~~ 68 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLH--YKFNNRTSVMLKDRWRT------MKKLK-LISSDSE 68 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHH--SCCSSCCHHHHHHHHHH------HHHTS-CCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHH--cCcCCCCHHHHHHHHHH------HcCCC-CCCCCCC
Confidence 357789999999999999999999999999999997 78 9999999999999 99999 8887653
No 13
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.64 E-value=5.3e-17 Score=129.75 Aligned_cols=56 Identities=39% Similarity=0.578 Sum_probs=48.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhhccccccCC
Q 010139 114 PRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILG 175 (517)
Q Consensus 114 ~rkKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirrr~~~LdP~ 175 (517)
...+|++||+|||++|+++|++||.++|..||+.+++.+||+.|||+||++ +++|+
T Consensus 7 ~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~n------l~k~g 62 (64)
T 3sjm_A 7 NITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRT------MKRLG 62 (64)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHH------HHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHH------HhccC
Confidence 335789999999999999999999999999998744569999999999999 56665
No 14
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=1.2e-16 Score=124.86 Aligned_cols=57 Identities=26% Similarity=0.359 Sum_probs=53.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhhccccccCCCCC
Q 010139 113 PPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNS 178 (517)
Q Consensus 113 ~~rkKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirrr~~~LdP~~Ik 178 (517)
.+..++++||+|||++|+++|++||.++|..||.. +++||++|||+||.+ +|+|+ |+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~--~~~Rt~~qcr~Rw~~------~l~p~-i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASH--FPNRTDQQCQYRWLR------VLSGP-SS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHH--CSSSCHHHHHHHHHH------TSCSS-SC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHH--ccCCCHHHHHHHHHH------HcCCc-cC
Confidence 45678999999999999999999998899999987 899999999999999 99998 65
No 15
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.63 E-value=1.4e-16 Score=121.25 Aligned_cols=51 Identities=35% Similarity=0.580 Sum_probs=48.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhhccccccCC
Q 010139 117 KRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILG 175 (517)
Q Consensus 117 Krg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirrr~~~LdP~ 175 (517)
++++||+|||++|+++|++||.++|..||.. +++||++|||+||.+ +|+|+
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~--~~~Rt~~qcr~Rw~~------~L~P~ 52 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKH--LKGRIGKQCRERWHN------HLNPE 52 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHTT--STTCCHHHHHHHHHH------TTSCC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHHHH--cCCCCHHHHHHHHHH------HcCcC
Confidence 6899999999999999999998899999987 899999999999999 99985
No 16
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.61 E-value=1.8e-16 Score=120.38 Aligned_cols=51 Identities=29% Similarity=0.440 Sum_probs=47.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhhccccccCC
Q 010139 117 KRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILG 175 (517)
Q Consensus 117 Krg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirrr~~~LdP~ 175 (517)
++++||+|||++|+++|++||.++|..||+. +++||++||++||.+ +|+|+
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~--~~~Rt~~qcr~Rw~~------~L~P~ 52 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIANY--LPNRTDVQCQHRWQK------VLNPE 52 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHHT--STTCCHHHHHHHHHH------HHSCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHH--cCCCCHHHHHHHHHH------HcCcC
Confidence 6899999999999999999998899999987 899999999999999 89885
No 17
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.59 E-value=1.6e-16 Score=155.74 Aligned_cols=110 Identities=15% Similarity=0.152 Sum_probs=88.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCC-----cceeecccccccCCchhhhhHHHhhhhccccccCCCCC----------
Q 010139 114 PRKKRKPWTAEEDLELISAVQKCGEGN-----WANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNS---------- 178 (517)
Q Consensus 114 ~rkKrg~WT~EEDe~Ll~lV~k~G~gn-----W~~IAk~~f~pgRT~kQCReRW~nirrr~~~LdP~~Ik---------- 178 (517)
+..++++||+|||++|+++|+++|..+ |..||+. ++|||+.|||+||+. +|.+. |+
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~--LpGRT~nsIRnRw~~------~L~~~-ln~vy~~ded~~ 74 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHY--VPNHTGNSIRHRFRV------YLSKR-LEYVYEVDKFGK 74 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTT--STTSCHHHHHHHHHH------TTGGG-CCCEECBCTTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHH--cCCCCHHHHHHHHHH------HHhhh-cccccccCcchh
Confidence 345788999999999999999998653 9999987 999999999999999 66666 54
Q ss_pred -------------------CCCCCHHHHHHHHHHHHhhc------------------------------CCCC-------
Q 010139 179 -------------------SGSQLSEAQLAARHAMSLAL------------------------------DMPV------- 202 (517)
Q Consensus 179 -------------------kgpWT~EED~~Lleav~~al------------------------------~~G~------- 202 (517)
+..||.+||-.|...+...+ -++.
T Consensus 75 Li~d~~Gn~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (246)
T 1ign_A 75 LVRDDDGNLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSE 154 (246)
T ss_dssp BCBCTTSCBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------
T ss_pred hhhccCCCceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCC
Confidence 78899999999988876511 0111
Q ss_pred ----------------CCchhHhhccCCCCCCCCCccccCCCCCCCC
Q 010139 203 ----------------KNITASCTNTTAGTTSSATMNNPVPSTANAE 233 (517)
Q Consensus 203 ----------------kk~Ws~IA~~LPGRTdn~~IKNrWns~lr~~ 233 (517)
+-.|..|+.++|+||++. +||||...++..
T Consensus 155 ~~f~~~~~~~~~gp~~~~~fk~ia~~~P~HT~~S-WRdRyrKfl~~~ 200 (246)
T 1ign_A 155 PNFAAYRTQSRRGPIAREFFKHFAEEHAAHTENA-WRDRFRKFLLAY 200 (246)
T ss_dssp ------CCCCCCCCCCTTHHHHHHHHTTTSCHHH-HHHHHHHTHHHH
T ss_pred cchhhhccccccCcchHHHHHHHHHHCCCCChhh-HHHHHHHHHhhc
Confidence 014999999999999999 999999888765
No 18
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.58 E-value=1.5e-15 Score=132.57 Aligned_cols=84 Identities=24% Similarity=0.405 Sum_probs=71.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCcceeeccc--ccccCCchhhhhHHHhhhhccccccCCCCCCCCCCHHHHH
Q 010139 111 SMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGD--FKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQL 188 (517)
Q Consensus 111 sl~~rkKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~--f~pgRT~kQCReRW~nirrr~~~LdP~~IkkgpWT~EED~ 188 (517)
...+++++++||+|||+.|+++|++||.|+|..|++.+ ++++||+.||++||+++.++. .++|. ++++.-++.|-.
T Consensus 6 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~-~~~p~-~~rg~~~P~~~l 83 (105)
T 2aje_A 6 EDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA-KISPQ-QRRGEPVPQELL 83 (105)
T ss_dssp ---CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT-TCCTT-TTTCCSCCCHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc-cCCcc-cccCCCCCHHHH
Confidence 35678899999999999999999999999999999974 248999999999999977654 56999 999988887765
Q ss_pred H-HHHHHHh
Q 010139 189 A-ARHAMSL 196 (517)
Q Consensus 189 ~-Lleav~~ 196 (517)
. +++++..
T Consensus 84 ~rv~~~~~~ 92 (105)
T 2aje_A 84 NRVLNAHGY 92 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 5 8888888
No 19
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.57 E-value=8.2e-16 Score=117.64 Aligned_cols=49 Identities=47% Similarity=0.802 Sum_probs=45.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCcceeecccccc--cCCchhhhhHHHhhhh
Q 010139 117 KRKPWTAEEDLELISAVQKCGEGNWANILRGDFKW--DRTASQLSQRWNILRK 167 (517)
Q Consensus 117 Krg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~p--gRT~kQCReRW~nirr 167 (517)
++++||+|||++|+++|++||.++|..||.. ++ +||+.||++||.+|.|
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~--~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLH--YKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHH--SCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHH--cCCCCCCHHHHHHHHHHHHc
Confidence 5799999999999999999999999999997 78 9999999999999655
No 20
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.54 E-value=3.4e-15 Score=125.31 Aligned_cols=76 Identities=21% Similarity=0.367 Sum_probs=65.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCcceeecccc--cccCCchhhhhHHHhhhhccccccCCCCCCC-CCCHHHHHHHHHHHH
Q 010139 119 KPWTAEEDLELISAVQKCGEGNWANILRGDF--KWDRTASQLSQRWNILRKKHGNVILGSNSSG-SQLSEAQLAARHAMS 195 (517)
Q Consensus 119 g~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f--~pgRT~kQCReRW~nirrr~~~LdP~~Ikkg-pWT~EED~~Lleav~ 195 (517)
++||+|||+.|+++|++||.|+|..|++.+| +++||+.||++||+++.|+. .++|. ++++ +...+.+..++.++.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~-~~~p~-~~~~~~~p~~~~~rv~~~~a 78 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA-SIAPQ-QRRGEPVPQDLLDRVLAAHA 78 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH-HSCGG-GCCSSCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc-cCCcc-cccCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999999999998633 78999999999999976643 46887 6666 677777788999988
Q ss_pred h
Q 010139 196 L 196 (517)
Q Consensus 196 ~ 196 (517)
.
T Consensus 79 ~ 79 (83)
T 2ckx_A 79 Y 79 (83)
T ss_dssp H
T ss_pred H
Confidence 8
No 21
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=4.4e-15 Score=116.53 Aligned_cols=54 Identities=24% Similarity=0.474 Sum_probs=49.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhhccccccCC
Q 010139 114 PRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILG 175 (517)
Q Consensus 114 ~rkKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirrr~~~LdP~ 175 (517)
+..++++||+|||++|+++|++||.++|..||+. +++||++|||+||.+ +|.+.
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~--~~~Rt~~qcr~r~~~------~l~~~ 57 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQ--MCTKTKEECEKHYMK------YFSGP 57 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHH--HTTSCHHHHHHHHHH------HTTCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHH--hCCCCHHHHHHHHHH------HccCC
Confidence 4568999999999999999999999999999997 899999999999999 66654
No 22
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.50 E-value=7.2e-15 Score=114.78 Aligned_cols=50 Identities=30% Similarity=0.430 Sum_probs=45.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccc-cCCchhhhhHHHhh
Q 010139 114 PRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKW-DRTASQLSQRWNIL 165 (517)
Q Consensus 114 ~rkKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~p-gRT~kQCReRW~ni 165 (517)
....+++||+|||++|+++|++||.++|..||+. ++ +||++|||+||.++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~--~~~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADY--VGNARTKEECRDHYLKT 55 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHH--HCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHH--HCCCCCHHHHHHHHHHH
Confidence 3456889999999999999999999999999987 88 99999999999983
No 23
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=3.6e-15 Score=118.69 Aligned_cols=60 Identities=22% Similarity=0.336 Sum_probs=52.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhhccccccCCCCCCC
Q 010139 110 GSMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSG 180 (517)
Q Consensus 110 ~sl~~rkKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirrr~~~LdP~~Ikkg 180 (517)
++|.+..++++||+|||++|+.+|++||. +|..||+ +++||++|||+||.+ +|+|. ++++
T Consensus 1 g~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~---~~gRt~~qcr~Rw~~------~l~~~-~~~~ 60 (66)
T 2din_A 1 GSSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP---IIGRTAAQCLEHYEF------LLDKA-AQRD 60 (66)
T ss_dssp CCCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH---HHSSCHHHHHHHHHH------HHHHH-HHSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc---ccCcCHHHHHHHHHH------HhChH-hcCC
Confidence 46789999999999999999999999995 9999998 358999999999999 77776 5544
No 24
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.46 E-value=4.2e-15 Score=122.07 Aligned_cols=59 Identities=10% Similarity=-0.065 Sum_probs=47.7
Q ss_pred hhHHHhhhhccccccCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCchhHhhccCCCCCCCCCccccCCCCCC
Q 010139 159 SQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTAN 231 (517)
Q Consensus 159 ReRW~nirrr~~~LdP~~IkkgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LPGRTdn~~IKNrWns~lr 231 (517)
.-||.+ +|||+ +++++||+|||++|+++|.+ ||++ |+.||++| |||+++ |||||+.+.+
T Consensus 10 ~~~~~~------~ldP~-i~k~~wT~EED~~L~~l~~~---~G~k--W~~IA~~l-gRt~~q-~knRw~~L~~ 68 (73)
T 2llk_A 10 GRENLY------FQGDR-NHVGKYTPEEIEKLKELRIK---HGND--WATIGAAL-GRSASS-VKDRCRLMKD 68 (73)
T ss_dssp ---------------CC-CCCCSSCHHHHHHHHHHHHH---HSSC--HHHHHHHH-TSCHHH-HHHHHHHCSC
T ss_pred Ccceee------ecCCC-CCCCCCCHHHHHHHHHHHHH---HCCC--HHHHHHHh-CCCHHH-HHHHHHHHHH
Confidence 357888 99999 99999999999999999999 9999 99999999 999999 9999986544
No 25
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=2.7e-14 Score=116.09 Aligned_cols=59 Identities=24% Similarity=0.291 Sum_probs=51.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCC-----CCcceeecccccccCCchhhhhHHHhhhhccccccCCCCCCC
Q 010139 113 PPRKKRKPWTAEEDLELISAVQKCGE-----GNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSG 180 (517)
Q Consensus 113 ~~rkKrg~WT~EEDe~Ll~lV~k~G~-----gnW~~IAk~~f~pgRT~kQCReRW~nirrr~~~LdP~~Ikkg 180 (517)
++...+++||+|||++|+++|++||. ++|..||.. +++||..|||+||++ ||.+. ++.+
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~--~~~Rt~~qcr~r~~~------~l~~~-~k~g 66 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADE--LGNRTAKQVASQVQK------YFIKL-TKAG 66 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHH--HSSSCHHHHHHHHHH------HHGGG-STTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHH--hCCCCHHHHHHHHHH------HHHHH-HhcC
Confidence 46678999999999999999999997 789999987 899999999999999 66665 5544
No 26
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.42 E-value=4.2e-14 Score=114.50 Aligned_cols=54 Identities=24% Similarity=0.225 Sum_probs=49.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhh
Q 010139 111 SMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRK 167 (517)
Q Consensus 111 sl~~rkKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirr 167 (517)
+..+..++++||+|||++|+++|++||. +|..||+. +++||+.||+.||++|++
T Consensus 2 s~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~--~~~Rt~~q~k~r~~~~l~ 55 (72)
T 2cu7_A 2 SSGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKL--IGSRTVLQVKSYARQYFK 55 (72)
T ss_dssp CCCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHH--HSSSCHHHHHHHHHHHHH
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHH--cCCCCHHHHHHHHHHHHH
Confidence 4567889999999999999999999995 99999986 899999999999999644
No 27
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=4.5e-14 Score=112.33 Aligned_cols=56 Identities=14% Similarity=0.071 Sum_probs=53.3
Q ss_pred ccccCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCchhHhhccCCCCCCCCCccccCCCCCCCC
Q 010139 170 GNVILGSNSSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAE 233 (517)
Q Consensus 170 ~~LdP~~IkkgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LPGRTdn~~IKNrWns~lr~~ 233 (517)
++|+|. +++++||.|||++|++++.. +|.+ |..||. |+|||+++ ||+||+.+|++.
T Consensus 1 g~L~P~-~~k~~WT~eED~~L~~~~~~---~g~~--W~~Ia~-~~gRt~~q-cr~Rw~~~l~~~ 56 (66)
T 2din_A 1 GSSGSS-GKKTEWSREEEEKLLHLAKL---MPTQ--WRTIAP-IIGRTAAQ-CLEHYEFLLDKA 56 (66)
T ss_dssp CCCSSS-SSCCCCCHHHHHHHHHHHHH---CTTC--HHHHHH-HHSSCHHH-HHHHHHHHHHHH
T ss_pred CCCCCC-CCCCCCCHHHHHHHHHHHHH---cCCC--HHHHhc-ccCcCHHH-HHHHHHHHhChH
Confidence 489999 99999999999999999999 9998 999999 99999999 999999988775
No 28
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.33 E-value=5.8e-13 Score=109.33 Aligned_cols=53 Identities=26% Similarity=0.343 Sum_probs=46.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhh
Q 010139 111 SMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRK 167 (517)
Q Consensus 111 sl~~rkKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirr 167 (517)
.+.++.++++||+|||++|+++|++|| .+|..||+. + +||+.||++||..|.+
T Consensus 16 ~ldP~i~k~~wT~EED~~L~~l~~~~G-~kW~~IA~~--l-gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 16 FQGDRNHVGKYTPEEIEKLKELRIKHG-NDWATIGAA--L-GRSASSVKDRCRLMKD 68 (73)
T ss_dssp ---CCCCCCSSCHHHHHHHHHHHHHHS-SCHHHHHHH--H-TSCHHHHHHHHHHCSC
T ss_pred ecCCCCCCCCCCHHHHHHHHHHHHHHC-CCHHHHHHH--h-CCCHHHHHHHHHHHHH
Confidence 468899999999999999999999999 569999997 7 9999999999998543
No 29
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.32 E-value=2.5e-13 Score=105.99 Aligned_cols=56 Identities=7% Similarity=-0.118 Sum_probs=52.3
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHhhcCCC-CCCchhHhhccCCCCCCCCCccccCCCCCCCCcc
Q 010139 173 ILGSNSSGSQLSEAQLAARHAMSLALDMP-VKNITASCTNTTAGTTSSATMNNPVPSTANAEAS 235 (517)
Q Consensus 173 dP~~IkkgpWT~EED~~Lleav~~al~~G-~kk~Ws~IA~~LPGRTdn~~IKNrWns~lr~~~s 235 (517)
+|. +++++||.|||++|+++|.+ || ++ |..||.+|+|||+.+ |++||+.+|++..+
T Consensus 3 ~p~-~~k~~Wt~eED~~L~~~v~~---~G~~~--W~~Ia~~~~~Rt~~q-cr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGS-SGKVKWTHEEDEQLRALVRQ---FGQQD--WKFLASHFPNRTDQQ-CQYRWLRVLSGPSS 59 (60)
T ss_dssp SCC-CCCSCCCHHHHHHHHHHHHH---TCTTC--HHHHHHHCSSSCHHH-HHHHHHHTSCSSSC
T ss_pred CCC-CCCCCCCHHHHHHHHHHHHH---hCCCC--HHHHHHHccCCCHHH-HHHHHHHHcCCccC
Confidence 577 99999999999999999999 99 57 999999999999999 99999999998743
No 30
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.31 E-value=9.4e-14 Score=112.47 Aligned_cols=58 Identities=5% Similarity=-0.098 Sum_probs=54.3
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCchhHhhccCCCCCCCCCccccCCCCCCCCcc
Q 010139 171 NVILGSNSSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAEAS 235 (517)
Q Consensus 171 ~LdP~~IkkgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LPGRTdn~~IKNrWns~lr~~~s 235 (517)
.++|. +++++||.|||++|+++|.+ ||.+ |..||.+|||||+++ |||||+.++++...
T Consensus 2 s~~p~-~~~~~WT~eEd~~l~~~~~~---~G~~--W~~Ia~~~~~Rt~~q-~k~r~~~~l~~~~~ 59 (72)
T 2cu7_A 2 SSGSS-GYSVKWTIEEKELFEQGLAK---FGRR--WTKISKLIGSRTVLQ-VKSYARQYFKNKVK 59 (72)
T ss_dssp CCCCS-SCCCCCCHHHHHHHHHHHHH---TCSC--HHHHHHHHSSSCHHH-HHHHHHHHHHHHSC
T ss_pred CCCCC-cCCCCCCHHHHHHHHHHHHH---HCcC--HHHHHHHcCCCCHHH-HHHHHHHHHHHHHh
Confidence 57899 99999999999999999999 9999 999999999999999 99999998887633
No 31
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.30 E-value=1e-12 Score=109.15 Aligned_cols=47 Identities=21% Similarity=0.376 Sum_probs=44.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhh
Q 010139 116 KKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 165 (517)
Q Consensus 116 kKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~ni 165 (517)
..+++||+|||++|+++|++|| ++|..||++ +++||..||++||.++
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~--v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEMYK-DDWNKVSEH--VGSRTQDECILHFLRL 62 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHH--HSSCCHHHHHHHHTTS
T ss_pred ccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHH--cCCCCHHHHHHHHHHh
Confidence 4578999999999999999999 999999997 8999999999999984
No 32
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.29 E-value=1.1e-12 Score=116.80 Aligned_cols=63 Identities=27% Similarity=0.457 Sum_probs=57.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhhccccccCCCCCCCCCCH
Q 010139 112 MPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLS 184 (517)
Q Consensus 112 l~~rkKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirrr~~~LdP~~IkkgpWT~ 184 (517)
+.+..++++||+|||++|+.+|.+|| .+|..||+. ++|||+.||+.||++ +|++. +..++|+.
T Consensus 48 l~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~--l~gRt~~~~k~rw~~------~l~~~-~~~~~~~~ 110 (131)
T 3zqc_A 48 LDPAVVKHAWTPEEDETIFRNYLKLG-SKWSVIAKL--IPGRTDNAIKNRWNS------SISKR-ISTNSNHK 110 (131)
T ss_dssp TSTTCCCSCCCHHHHHHHHHHHHHSC-SCHHHHTTT--STTCCHHHHHHHHHH------TTGGG-CCCCTTSC
T ss_pred cCccccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHH--cCCCCHHHHHHHHHH------HHHHH-hhcCCCcc
Confidence 46677899999999999999999999 889999987 899999999999999 88888 88888875
No 33
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.24 E-value=5e-13 Score=101.36 Aligned_cols=51 Identities=10% Similarity=-0.046 Sum_probs=46.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCC-CCchhHhhccCCCCCCCCCccccCCCCCCCC
Q 010139 177 NSSGSQLSEAQLAARHAMSLALDMPV-KNITASCTNTTAGTTSSATMNNPVPSTANAE 233 (517)
Q Consensus 177 IkkgpWT~EED~~Lleav~~al~~G~-kk~Ws~IA~~LPGRTdn~~IKNrWns~lr~~ 233 (517)
|++++||.|||++|+++|.. ||. + |..||.+|||||+.+ |++||+.+|+|.
T Consensus 1 i~~~~Wt~eED~~L~~~v~~---~G~~~--W~~Ia~~~~~Rt~~q-cr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQ---NGTDD--WKVIANYLPNRTDVQ-CQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHH---HCSSC--HHHHHHTSTTCCHHH-HHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHH---hCCCC--HHHHHHHcCCCCHHH-HHHHHHHHcCcC
Confidence 57899999999999999999 998 7 999999999999999 999999998874
No 34
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.24 E-value=9.2e-13 Score=100.05 Aligned_cols=52 Identities=12% Similarity=-0.015 Sum_probs=48.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCchhHhhccCCCCCCCCCccccCCCCCCCC
Q 010139 177 NSSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAE 233 (517)
Q Consensus 177 IkkgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LPGRTdn~~IKNrWns~lr~~ 233 (517)
|++++||.|||++|+++|.. ||.+ +|..||.+|+|||+.+ |++||+.+|+|.
T Consensus 1 l~k~~Wt~eED~~L~~~v~~---~G~~-~W~~Ia~~~~~Rt~~q-cr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQK---YGPK-RWSVIAKHLKGRIGKQ-CRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHH---HCTT-CHHHHHTTSTTCCHHH-HHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHH---HCcC-hHHHHHHHcCCCCHHH-HHHHHHHHcCcC
Confidence 57899999999999999999 9972 3999999999999999 999999999874
No 35
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.88 E-value=7.7e-13 Score=111.67 Aligned_cols=57 Identities=9% Similarity=-0.127 Sum_probs=54.1
Q ss_pred ccccCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCchhHhhccCCCCCCCCCccccCCCCCCCC
Q 010139 170 GNVILGSNSSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAE 233 (517)
Q Consensus 170 ~~LdP~~IkkgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LPGRTdn~~IKNrWns~lr~~ 233 (517)
..++|. +++++||.|||++|+++|.+ ||++ |..||.+|||||+++ |||||+.++++.
T Consensus 8 ~~~~p~-~~~~~WT~eEd~~l~~~~~~---~G~~--W~~IA~~l~gRt~~q-~k~r~~~~lrk~ 64 (89)
T 2ltp_A 8 SSGREN-LYFQGWTEEEMGTAKKGLLE---HGRN--WSAIARMVGSKTVSQ-CKNFYFNYKKRQ 64 (89)
Confidence 367888 99999999999999999999 9999 999999999999999 999999999886
No 36
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.85 E-value=1.1e-12 Score=110.69 Aligned_cols=52 Identities=25% Similarity=0.259 Sum_probs=47.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhh
Q 010139 113 PPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRK 167 (517)
Q Consensus 113 ~~rkKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirr 167 (517)
.+...+++||+|||++|+.+|.+||. +|..||.. +++||+.||+.||.++++
T Consensus 11 ~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~--l~gRt~~q~k~r~~~~lr 62 (89)
T 2ltp_A 11 RENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARM--VGSKTVSQCKNFYFNYKK 62 (89)
Confidence 55668999999999999999999995 89999987 899999999999999544
No 37
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.20 E-value=8.4e-12 Score=106.65 Aligned_cols=53 Identities=30% Similarity=0.569 Sum_probs=48.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhh
Q 010139 112 MPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRK 167 (517)
Q Consensus 112 l~~rkKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirr 167 (517)
+.+..++++||+|||++|+.+|.+|| .+|..||+. ++|||+.||+.||..+.|
T Consensus 50 l~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~--l~gRt~~~~k~rw~~~~~ 102 (105)
T 1gv2_A 50 LNPEVKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKL--LPGRTDNAIKNHWNSTMR 102 (105)
T ss_dssp TCCCCCCCCCCHHHHHHHHHHHHHHS-SCHHHHHTT--CTTCCHHHHHHHHHHHTC
T ss_pred cCCcccccCCCHHHHHHHHHHHHHhC-CCHHHHHHH--cCCCCHHHHHHHHHHHHh
Confidence 46777899999999999999999999 789999987 899999999999998543
No 38
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.20 E-value=7.7e-12 Score=110.81 Aligned_cols=56 Identities=36% Similarity=0.636 Sum_probs=50.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhhccc
Q 010139 112 MPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHG 170 (517)
Q Consensus 112 l~~rkKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirrr~~ 170 (517)
+.+..++++||+|||++|+.+|++|| .+|..||+. +++||..||+.||..|.++.+
T Consensus 56 l~p~~~~~~WT~eEd~~L~~~v~~~G-~~W~~Ia~~--l~gRt~~~~k~rw~~l~~k~~ 111 (126)
T 3osg_A 56 LAPSISHTPWTAEEDALLVQKIQEYG-RQWAIIAKF--FPGRTDIHIKNRWVTISNKLG 111 (126)
T ss_dssp TSTTSCCSCCCHHHHHHHHHHHHHHC-SCHHHHHTT--STTCCHHHHHHHHHHHHHHTT
T ss_pred cccccccccCCHHHHHHHHHHHHHHC-cCHHHHHHH--cCCCCHHHHHHHHHHHHHhcC
Confidence 46677899999999999999999999 889999987 899999999999999866543
No 39
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=4.5e-12 Score=101.83 Aligned_cols=58 Identities=3% Similarity=-0.120 Sum_probs=53.1
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHhhcCCC-CCCchhHhhccCCCCCCCCCccccCCCCCCCCcc
Q 010139 171 NVILGSNSSGSQLSEAQLAARHAMSLALDMP-VKNITASCTNTTAGTTSSATMNNPVPSTANAEAS 235 (517)
Q Consensus 171 ~LdP~~IkkgpWT~EED~~Lleav~~al~~G-~kk~Ws~IA~~LPGRTdn~~IKNrWns~lr~~~s 235 (517)
...|. +++++||.|||++|+++|.. || .+ |..||.+|+|||+.+ |++||+.+|++...
T Consensus 2 ss~~~-~k~~~Wt~eED~~L~~~v~~---~G~~~--W~~Ia~~l~~Rt~~q-cr~Rw~~~L~p~i~ 60 (70)
T 2dim_A 2 SSGSS-GKGGVWRNTEDEILKAAVMK---YGKNQ--WSRIASLLHRKSAKQ-CKARWYEWLDPSIK 60 (70)
T ss_dssp CSCSC-STTCCCCHHHHHHHHHHHHH---TCSSC--HHHHHHHSTTCCHHH-HHHHHHHTSCSSSC
T ss_pred CCCCC-CCCCCCCHHHHHHHHHHHHH---HCcCC--HHHHHHHhcCCCHHH-HHHHHHHHcCCccc
Confidence 34577 99999999999999999999 99 67 999999999999999 99999999998744
No 40
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.16 E-value=1.1e-11 Score=106.84 Aligned_cols=54 Identities=24% Similarity=0.596 Sum_probs=48.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhhc
Q 010139 112 MPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKK 168 (517)
Q Consensus 112 l~~rkKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirrr 168 (517)
+.+..++++||+|||++|+.+|.+|| .+|..||+. +++||+.||+.||..+.++
T Consensus 47 L~p~i~~~~WT~eEd~~L~~~~~~~G-~~W~~Ia~~--l~gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 47 INPALRTDPWSPEEDMLLDQKYAEYG-PKWNKISKF--LKNRSDNNIRNRWMMIARH 100 (107)
T ss_dssp SSSCCTTCCCCHHHHHHHHHHHHHTC-SCHHHHHHH--HSSSCHHHHHHHHHHHHHH
T ss_pred HcccccccccCHHHHHHHHHHHHHhC-cCHHHHHHH--CCCCCHHHHHHHHHHHHhh
Confidence 46677899999999999999999999 689999987 8999999999999986553
No 41
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.16 E-value=8.7e-12 Score=102.31 Aligned_cols=51 Identities=24% Similarity=0.412 Sum_probs=45.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCC---CCcceeecccccccCCchhhhhHHHhhhh
Q 010139 115 RKKRKPWTAEEDLELISAVQKCGE---GNWANILRGDFKWDRTASQLSQRWNILRK 167 (517)
Q Consensus 115 rkKrg~WT~EEDe~Ll~lV~k~G~---gnW~~IAk~~f~pgRT~kQCReRW~nirr 167 (517)
+..+++||+|||++|+.++.+||. .+|..||+. ++|||.+||+.||.+|.+
T Consensus 15 ~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~--vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 15 RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARC--VPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGG--CSSSCHHHHHHHHHHHHS
T ss_pred ccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHH--cCCCCHHHHHHHHHHHHH
Confidence 446789999999999999999994 579999987 899999999999998543
No 42
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.12 E-value=6.7e-12 Score=98.36 Aligned_cols=53 Identities=9% Similarity=-0.056 Sum_probs=49.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhcCCC-CCCchhHhhccCCCCCCCCCccccCCCCCCCC
Q 010139 174 LGSNSSGSQLSEAQLAARHAMSLALDMP-VKNITASCTNTTAGTTSSATMNNPVPSTANAE 233 (517)
Q Consensus 174 P~~IkkgpWT~EED~~Lleav~~al~~G-~kk~Ws~IA~~LPGRTdn~~IKNrWns~lr~~ 233 (517)
|. |.+++||.|||++|+++|.+ || .+ |..||.+|||||+.+ |++||+.++.+.
T Consensus 4 ~~-~~~~~WT~eED~~L~~~v~~---~G~~~--W~~Ia~~~~~Rt~~q-cr~r~~~~l~~~ 57 (60)
T 1x41_A 4 GS-SGDPSWTAQEEMALLEAVMD---CGFGN--WQDVANQMCTKTKEE-CEKHYMKYFSGP 57 (60)
T ss_dssp CC-CCCSSSCHHHHHHHHHHHHH---TCTTC--HHHHHHHHTTSCHHH-HHHHHHHHTTCS
T ss_pred CC-CCCCCCCHHHHHHHHHHHHH---HCcCc--HHHHHHHhCCCCHHH-HHHHHHHHccCC
Confidence 55 89999999999999999999 99 67 999999999999999 999999887654
No 43
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.12 E-value=3e-11 Score=96.55 Aligned_cols=53 Identities=30% Similarity=0.459 Sum_probs=47.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCcceeecc-cccccCCchhhhhHHHhhhhcc
Q 010139 116 KKRKPWTAEEDLELISAVQKCGEGNWANILRG-DFKWDRTASQLSQRWNILRKKH 169 (517)
Q Consensus 116 kKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~-~f~pgRT~kQCReRW~nirrr~ 169 (517)
+.+++||+|||+.|+++|++||. +|..|+.. -|+++||..++++||++|.|+.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence 37899999999999999999996 99999965 4578999999999999987643
No 44
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.07 E-value=1.1e-11 Score=99.48 Aligned_cols=58 Identities=9% Similarity=-0.071 Sum_probs=52.8
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHhhcCCC-CCCchhHhhccCC--CCCCCCCccccCCCCCCCCcc
Q 010139 171 NVILGSNSSGSQLSEAQLAARHAMSLALDMP-VKNITASCTNTTA--GTTSSATMNNPVPSTANAEAS 235 (517)
Q Consensus 171 ~LdP~~IkkgpWT~EED~~Lleav~~al~~G-~kk~Ws~IA~~LP--GRTdn~~IKNrWns~lr~~~s 235 (517)
...|. .++++||.|||++|+++|.. || .+ |..|+.+|+ |||+++ |++||+.+|++...
T Consensus 3 ~~~~~-~~r~~WT~eED~~L~~~v~~---~G~~~--W~~Ia~~~~~~~Rt~~q-cr~Rw~~~l~p~i~ 63 (69)
T 1ity_A 3 EKHRA-RKRQAWLWEEDKNLRSGVRK---YGEGN--WSKILLHYKFNNRTSVM-LKDRWRTMKKLKLI 63 (69)
T ss_dssp CTTCS-SSCCCCCHHHHHHHHHHHHH---HCSSC--HHHHHHHSCCSSCCHHH-HHHHHHHHHHTSCC
T ss_pred CCCCC-CCCCCCCHHHHHHHHHHHHH---HCCCc--HHHHHHHcCcCCCCHHH-HHHHHHHHcCCCCC
Confidence 45666 88999999999999999999 99 57 999999999 999999 99999999998754
No 45
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.05 E-value=1.3e-11 Score=94.25 Aligned_cols=49 Identities=10% Similarity=-0.043 Sum_probs=45.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCC-CCCchhHhhccCC--CCCCCCCccccCCCCCCC
Q 010139 178 SSGSQLSEAQLAARHAMSLALDMP-VKNITASCTNTTA--GTTSSATMNNPVPSTANA 232 (517)
Q Consensus 178 kkgpWT~EED~~Lleav~~al~~G-~kk~Ws~IA~~LP--GRTdn~~IKNrWns~lr~ 232 (517)
++++||+|||++|+++|.. || .+ |..|+.+|+ |||+.+ |++||..+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~---~G~~~--W~~Ia~~~~~~~Rt~~q-cr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRK---YGEGN--WSKILLHYKFNNRTSVM-LKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHH---HCTTC--HHHHHHHSCCSSCCHHH-HHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHH---HCcCC--HHHHHHHcCCCCCCHHH-HHHHHHHHHcc
Confidence 4789999999999999999 99 57 999999999 999999 99999987764
No 46
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=7.8e-12 Score=101.54 Aligned_cols=54 Identities=9% Similarity=-0.032 Sum_probs=49.6
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHhhcCCC------CCCchhHhhccCCCCCCCCCccccCCCCCCCC
Q 010139 173 ILGSNSSGSQLSEAQLAARHAMSLALDMP------VKNITASCTNTTAGTTSSATMNNPVPSTANAE 233 (517)
Q Consensus 173 dP~~IkkgpWT~EED~~Lleav~~al~~G------~kk~Ws~IA~~LPGRTdn~~IKNrWns~lr~~ 233 (517)
+|. +++++||.|||++|+++|.. || .+ |..||.+|+|||+.+ |++||+.+|++.
T Consensus 3 ~p~-~~~~~WT~eEd~~L~~~v~~---~g~~~~~~~~--W~~IA~~~~~Rt~~q-cr~r~~~~l~~~ 62 (75)
T 2yum_A 3 SGS-SGNQLWTVEEQKKLEQLLIK---YPPEEVESRR--WQKIADELGNRTAKQ-VASQVQKYFIKL 62 (75)
T ss_dssp CCC-CCSSCCCHHHHHHHHHHHHH---SCCCSCHHHH--HHHHHHHHSSSCHHH-HHHHHHHHHGGG
T ss_pred CCC-CCCCCCCHHHHHHHHHHHHH---hCCCCCCccc--HHHHHHHhCCCCHHH-HHHHHHHHHHHH
Confidence 577 99999999999999999999 99 56 999999999999999 999998877664
No 47
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.00 E-value=2.3e-11 Score=97.13 Aligned_cols=57 Identities=5% Similarity=-0.038 Sum_probs=46.0
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHhhcCCCC-CCchhHhhccCC--CCCCCCCccccCCCCCCCC
Q 010139 171 NVILGSNSSGSQLSEAQLAARHAMSLALDMPV-KNITASCTNTTA--GTTSSATMNNPVPSTANAE 233 (517)
Q Consensus 171 ~LdP~~IkkgpWT~EED~~Lleav~~al~~G~-kk~Ws~IA~~LP--GRTdn~~IKNrWns~lr~~ 233 (517)
++.....++++||+|||++|+++|.. ||. + |..|+.+++ |||+.+ |++||.+++++.
T Consensus 3 ~~~~~~~kk~~WT~eED~~L~~~V~~---~G~~~--W~~Ia~~~~~~~Rt~~q-cr~Rw~nl~k~g 62 (64)
T 3sjm_A 3 HMTTNITKKQKWTVEESEWVKAGVQK---YGEGN--WAAISKNYPFVNRTAVM-IKDRWRTMKRLG 62 (64)
T ss_dssp -------CCCCCCHHHHHHHHHHHHH---HCTTC--HHHHHHHSCCSSCCHHH-HHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHc---cCCCc--hHHHHhhcCCCCCCHHH-HHHHHHHHhccC
Confidence 44455468899999999999999999 995 6 999999876 999999 999999888764
No 48
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=98.98 E-value=5.1e-11 Score=92.96 Aligned_cols=51 Identities=10% Similarity=-0.059 Sum_probs=46.0
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHhhcCCC-CCCchhHhhccCC-CCCCCCCccccCCCC
Q 010139 172 VILGSNSSGSQLSEAQLAARHAMSLALDMP-VKNITASCTNTTA-GTTSSATMNNPVPST 229 (517)
Q Consensus 172 LdP~~IkkgpWT~EED~~Lleav~~al~~G-~kk~Ws~IA~~LP-GRTdn~~IKNrWns~ 229 (517)
+++. |.+++||.|||++|+++|.+ || .+ |..||.+|+ |||+.+ |++||..+
T Consensus 3 ~~~p-~~~~~WT~eED~~L~~~v~~---~G~~~--W~~IA~~~~~~Rt~~q-cr~r~~~~ 55 (58)
T 2elk_A 3 SGSS-GFDENWGADEELLLIDACET---LGLGN--WADIADYVGNARTKEE-CRDHYLKT 55 (58)
T ss_dssp SCCC-SCCCCCCHHHHHHHHHHHHH---TTTTC--HHHHHHHHCSSCCHHH-HHHHHHHH
T ss_pred CCCC-CCCCCCCHHHHHHHHHHHHH---HCcCC--HHHHHHHHCCCCCHHH-HHHHHHHH
Confidence 4555 77899999999999999999 99 67 999999999 999999 99999753
No 49
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.96 E-value=1.9e-10 Score=98.34 Aligned_cols=48 Identities=27% Similarity=0.563 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCC---CCcceeecccccccCCchhhhhHHHhhh
Q 010139 117 KRKPWTAEEDLELISAVQKCGE---GNWANILRGDFKWDRTASQLSQRWNILR 166 (517)
Q Consensus 117 Krg~WT~EEDe~Ll~lV~k~G~---gnW~~IAk~~f~pgRT~kQCReRW~nir 166 (517)
-+++||+|||++|+.++.+||. .+|..||.. ++|||.+||+.||.++.
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~--vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARA--VEGRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHH--STTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHH--cCCCCHHHHHHHHHHHH
Confidence 3679999999999999999983 569999998 89999999999999873
No 50
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=1.1e-09 Score=86.21 Aligned_cols=55 Identities=16% Similarity=0.142 Sum_probs=48.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhh
Q 010139 110 GSMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRK 167 (517)
Q Consensus 110 ~sl~~rkKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirr 167 (517)
++.+.++...+||+|||+++++++.+|| .+|..||.. +++||..||+++|...+|
T Consensus 4 ~~~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~--l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 4 GSSGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASY--LERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp SCCCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHH--CTTSCHHHHHHHHHHHTC
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHH--cCCCCHHHHHHHHHHhcC
Confidence 3456778899999999999999999999 799999976 899999999999987444
No 51
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.87 E-value=1.5e-10 Score=94.88 Aligned_cols=52 Identities=6% Similarity=-0.073 Sum_probs=47.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhcCCC----CCCchhHhhccCCCCCCCCCccccCCCCCCC
Q 010139 174 LGSNSSGSQLSEAQLAARHAMSLALDMP----VKNITASCTNTTAGTTSSATMNNPVPSTANA 232 (517)
Q Consensus 174 P~~IkkgpWT~EED~~Lleav~~al~~G----~kk~Ws~IA~~LPGRTdn~~IKNrWns~lr~ 232 (517)
+. +.+++||.|||++|++++.. || .+ |.+||.+|||||.++ |++||+.++..
T Consensus 14 ~~-~~~~~WT~eEd~~L~~al~~---~g~~~~~r--W~~IA~~vpGRT~~q-cr~Ry~~L~~d 69 (73)
T 2cqr_A 14 AR-SAEEPWTQNQQKLLELALQQ---YPRGSSDC--WDKIARCVPSKSKED-CIARYKLLVSG 69 (73)
T ss_dssp TT-CSSCCCCHHHHHHHHHHHHH---SCSSSHHH--HHHHGGGCSSSCHHH-HHHHHHHHHSS
T ss_pred cc-cCCCCCCHHHHHHHHHHHHH---cCCCCCch--HHHHHHHcCCCCHHH-HHHHHHHHHHc
Confidence 45 78899999999999999999 98 66 999999999999999 99999876653
No 52
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.80 E-value=4.9e-10 Score=110.05 Aligned_cols=55 Identities=7% Similarity=0.063 Sum_probs=49.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCC----chhHhhccCCCCCCCCCccccCCCCCCCCcc
Q 010139 177 NSSGSQLSEAQLAARHAMSLALDMPVKN----ITASCTNTTAGTTSSATMNNPVPSTANAEAS 235 (517)
Q Consensus 177 IkkgpWT~EED~~Lleav~~al~~G~kk----~Ws~IA~~LPGRTdn~~IKNrWns~lr~~~s 235 (517)
+++++||+|||++|+++|.+ +|++. .|..||++|||||+++ |||||+.+|++..-
T Consensus 6 ~~k~~FT~EED~~Ile~v~k---~Gn~r~ghk~W~~IAk~LpGRT~ns-IRnRw~~~L~~~ln 64 (246)
T 1ign_A 6 HNKASFTDEEDEFILDVVRK---NPTRRTTHTLYDEISHYVPNHTGNS-IRHRFRVYLSKRLE 64 (246)
T ss_dssp --CCCCCHHHHHHHHHHHHT---SGGGTTCSHHHHHHTTTSTTSCHHH-HHHHHHHTTGGGCC
T ss_pred CCCCCCCHHHHHHHHHHHHH---hCcCccccccHHHHHHHcCCCCHHH-HHHHHHHHHhhhcc
Confidence 78899999999999999999 98852 4999999999999999 99999999999854
No 53
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.76 E-value=1.6e-09 Score=89.85 Aligned_cols=47 Identities=6% Similarity=-0.032 Sum_probs=44.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCchhHhhccCCCCCCCCCccccCCCC
Q 010139 177 NSSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPST 229 (517)
Q Consensus 177 IkkgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LPGRTdn~~IKNrWns~ 229 (517)
..+++||.|||++|+++|.+ ||.+ |..||.+|+|||..+ |++||..+
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~---~G~~--W~~IA~~v~~RT~~q-cr~r~~~~ 62 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEM---YKDD--WNKVSEHVGSRTQDE-CILHFLRL 62 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHH---SSSC--HHHHHHHHSSCCHHH-HHHHHTTS
T ss_pred ccCCCcCHHHHHHHHHHHHH---hCCC--HHHHHHHcCCCCHHH-HHHHHHHh
Confidence 67789999999999999999 9977 999999999999999 99999987
No 54
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.67 E-value=1.9e-09 Score=86.19 Aligned_cols=51 Identities=10% Similarity=-0.029 Sum_probs=46.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCchhHhh---ccCCCCCCCCCccccCCCCCCCC
Q 010139 177 NSSGSQLSEAQLAARHAMSLALDMPVKNITASCT---NTTAGTTSSATMNNPVPSTANAE 233 (517)
Q Consensus 177 IkkgpWT~EED~~Lleav~~al~~G~kk~Ws~IA---~~LPGRTdn~~IKNrWns~lr~~ 233 (517)
-++.+||.|||+.|++.|.+ ||.+ |..|+ .+++|||+.+ ||++|..+++..
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k---~G~~--W~~I~~~y~f~~~RT~Vd-LKdk~r~L~k~~ 59 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKT---MGNH--WNSILWSFPFQKGRRAVD-LAHKYHRLISGP 59 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHH---HCSC--HHHHHHHSCCCTTCCHHH-HHHHHHHHHTCS
T ss_pred CCCCCCCHHHHHHHHHHHHH---HhHh--HHHHHHhCCCccCcccch-HHHHHHHHHhcc
Confidence 36689999999999999999 9998 99999 6889999999 999999888765
No 55
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.64 E-value=2.5e-09 Score=95.55 Aligned_cols=56 Identities=5% Similarity=-0.069 Sum_probs=50.9
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHhhcCCCC-CCchhHhhcc----CCCCCCCCCccccCCCCCCCC
Q 010139 171 NVILGSNSSGSQLSEAQLAARHAMSLALDMPV-KNITASCTNT----TAGTTSSATMNNPVPSTANAE 233 (517)
Q Consensus 171 ~LdP~~IkkgpWT~EED~~Lleav~~al~~G~-kk~Ws~IA~~----LPGRTdn~~IKNrWns~lr~~ 233 (517)
.+.+. .++++||.|||++|+++|.+ ||. + |+.|+.. |+|||+++ ||+||+++++..
T Consensus 10 ~~~~r-r~r~~WT~EEd~~L~~gV~k---~G~G~--W~~Ia~~~~~~f~~RT~v~-lKdRWrnllk~~ 70 (121)
T 2juh_A 10 ELSQR-RIRRPFSVAEVEALVEAVEH---LGTGR--WRDVKMRAFDNADHRTYVD-LKDKWKTLVHTA 70 (121)
T ss_dssp CCCCC-CSSCCCCHHHHHHHHHHHHH---HGGGC--HHHHHHHHCSCCSSCCSHH-HHHHHHHHHHHH
T ss_pred cccCC-CCCCCCCHHHHHHHHHHHHH---HCCCC--HHHHHHHhccccCCCCHHH-HHHHHHHHHhhh
Confidence 46667 89999999999999999999 998 7 9999998 49999999 999999999853
No 56
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.59 E-value=5.3e-09 Score=91.35 Aligned_cols=56 Identities=5% Similarity=-0.105 Sum_probs=49.6
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHhhcCCCC-CCchhHhhccC----CCCCCCCCccccCCCCCCCCcc
Q 010139 173 ILGSNSSGSQLSEAQLAARHAMSLALDMPV-KNITASCTNTT----AGTTSSATMNNPVPSTANAEAS 235 (517)
Q Consensus 173 dP~~IkkgpWT~EED~~Lleav~~al~~G~-kk~Ws~IA~~L----PGRTdn~~IKNrWns~lr~~~s 235 (517)
.+. .++++||.|||++|+++|.+ ||. + |+.|+..+ +|||+++ ||+||.++++....
T Consensus 8 ~~r-r~r~~WT~EEd~~L~~gV~k---~G~g~--W~~I~~~~~~~f~~RT~v~-lKdrWrnllk~~~~ 68 (105)
T 2aje_A 8 PQR-RIRRPFSVAEVEALVQAVEK---LGTGR--WRDVKLCAFEDADHRTYVD-LKDKWKTLVHTAKI 68 (105)
T ss_dssp -CC-CCCCSCCHHHHHHHHHHHHH---HCSSS--HHHHHSSSSSSTTCCCHHH-HHHHHHHHHHTTTC
T ss_pred cCC-CCCCCCCHHHHHHHHHHHHH---hCCCC--hHHHHHHhccccCCCCHHH-HHHHHHHHHhhccC
Confidence 344 78899999999999999999 998 7 99999976 8999999 99999999987633
No 57
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.59 E-value=2.9e-09 Score=89.26 Aligned_cols=49 Identities=6% Similarity=-0.048 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCC-CCchhHhhcc----CCCCCCCCCccccCCCCCCCCc
Q 010139 180 GSQLSEAQLAARHAMSLALDMPV-KNITASCTNT----TAGTTSSATMNNPVPSTANAEA 234 (517)
Q Consensus 180 gpWT~EED~~Lleav~~al~~G~-kk~Ws~IA~~----LPGRTdn~~IKNrWns~lr~~~ 234 (517)
.+||.|||++|+++|.+ ||. + |+.|+.. |+|||+++ ||+||+++++...
T Consensus 1 r~WT~eEd~~L~~gv~k---~G~g~--W~~I~~~~~~~~~~RT~~~-lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEH---LGTGR--WRDVKMRAFDNADHRTYVD-LKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHH---HCSSC--HHHHHHHHCTTCTTSCHHH-HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH---HCCCC--cHHHHHhhccccCCCCHHH-HHHHHHHHHHhcc
Confidence 47999999999999999 998 6 9999995 89999999 9999999987653
No 58
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.53 E-value=6.1e-09 Score=89.09 Aligned_cols=49 Identities=12% Similarity=0.105 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCC----CCCchhHhhccCCCCCCCCCccccCCCCCCC
Q 010139 178 SSGSQLSEAQLAARHAMSLALDMP----VKNITASCTNTTAGTTSSATMNNPVPSTANA 232 (517)
Q Consensus 178 kkgpWT~EED~~Lleav~~al~~G----~kk~Ws~IA~~LPGRTdn~~IKNrWns~lr~ 232 (517)
.+++||.|||++|++++.. || ++ |..||.+|||||+++ |++||+.++..
T Consensus 7 ~~~~WT~eEd~~L~~al~~---~~~~~~~r--W~~IA~~vpGRT~~q-~k~ry~~l~~d 59 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAV---YDKDTPDR--WANVARAVEGRTPEE-VKKHYEILVED 59 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHH---SCTTCTTH--HHHHHHHSTTCCHHH-HHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH---cCCCCCch--HHHHHHHcCCCCHHH-HHHHHHHHHHH
Confidence 3579999999999999999 85 56 999999999999999 99999987644
No 59
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.44 E-value=1e-07 Score=77.95 Aligned_cols=50 Identities=20% Similarity=0.402 Sum_probs=43.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCC---CCcceeecccccccCCchhhhhHHHhhhhc
Q 010139 116 KKRKPWTAEEDLELISAVQKCGE---GNWANILRGDFKWDRTASQLSQRWNILRKK 168 (517)
Q Consensus 116 kKrg~WT~EEDe~Ll~lV~k~G~---gnW~~IAk~~f~pgRT~kQCReRW~nirrr 168 (517)
.+.+.||.|||++|..++.+|+. .+|..||.. + |||..||+.||..|...
T Consensus 6 ~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~--l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHE--L-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHH--H-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHH--h-CCCHHHHHHHHHHHHHh
Confidence 35779999999999999999984 459999986 5 89999999999987554
No 60
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.37 E-value=2.8e-08 Score=88.91 Aligned_cols=51 Identities=4% Similarity=-0.092 Sum_probs=46.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCC-CCchhHhhccC----CCCCCCCCccccCCCCCCCC
Q 010139 177 NSSGSQLSEAQLAARHAMSLALDMPV-KNITASCTNTT----AGTTSSATMNNPVPSTANAE 233 (517)
Q Consensus 177 IkkgpWT~EED~~Lleav~~al~~G~-kk~Ws~IA~~L----PGRTdn~~IKNrWns~lr~~ 233 (517)
.++++||.|||++|+++|.+ ||. + |+.|+..+ +|||+++ ||+||.++++..
T Consensus 29 r~r~~WT~EEd~~L~~gV~k---~G~g~--W~~I~~~~~~~~~~RT~vd-lKdRWrnllk~~ 84 (122)
T 2roh_A 29 RIRRPFTVAEVELLVEAVEH---LGTGR--WRDVKFRAFENVHHRTYVD-LKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---HSSSC--HHHHHHHHHSSSCCCCHHH-HHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH---HCCCC--hHHHHHHhccccCCCCHHH-HHHHHHHHHhhc
Confidence 67889999999999999999 998 6 99999974 9999999 999999998754
No 61
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.36 E-value=1.7e-07 Score=91.47 Aligned_cols=50 Identities=24% Similarity=0.375 Sum_probs=45.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhh
Q 010139 115 RKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRK 167 (517)
Q Consensus 115 rkKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirr 167 (517)
.+...+||+||++++++++.+|| .+|..||+. +++||..||+.+|.+++|
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~--VgTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYG-RDFQAISDV--IGNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHH--HSSCCHHHHHHHHHHTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHH--cCCCCHHHHHHHHHHHHH
Confidence 35678999999999999999999 899999997 899999999999999655
No 62
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=1.4e-07 Score=74.18 Aligned_cols=48 Identities=4% Similarity=-0.174 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCchhHhhccCCCCCCCCCccccCCCCCC
Q 010139 178 SSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTAN 231 (517)
Q Consensus 178 kkgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LPGRTdn~~IKNrWns~lr 231 (517)
..++||+||++++++++.. ||.+ |..||.+|||||..+ |.++|+...+
T Consensus 11 ~~~~WT~eE~~~F~~~~~~---~gk~--w~~Ia~~l~~rt~~~-~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQ---HPKN--FGLIASYLERKSVPD-CVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHH---STTC--HHHHHHHCTTSCHHH-HHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHH---hCCC--HHHHHHHcCCCCHHH-HHHHHHHhcC
Confidence 4479999999999999999 9988 999999999999999 9999987554
No 63
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.25 E-value=3.2e-07 Score=72.24 Aligned_cols=45 Identities=18% Similarity=0.381 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHHHc--------CCCCcceeec-ccccccCCchhhhhHHHh
Q 010139 118 RKPWTAEEDLELISAVQKC--------GEGNWANILR-GDFKWDRTASQLSQRWNI 164 (517)
Q Consensus 118 rg~WT~EEDe~Ll~lV~k~--------G~gnW~~IAk-~~f~pgRT~kQCReRW~n 164 (517)
|.+||+|||+.|++.|.+| |..-|..+++ . +++||-.+||+||.+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~--~~~HtwqSwRdRy~k 55 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSS--LTQHSWQSLKDRYLK 55 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSC--SSSCCSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhH--CCCCCHHHHHHHHHH
Confidence 6799999999999999999 4444999999 5 899999999999998
No 64
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.19 E-value=7.1e-07 Score=73.39 Aligned_cols=49 Identities=16% Similarity=0.304 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCC---CCcceeecccccccCCchhhhhHHHhhhhc
Q 010139 118 RKPWTAEEDLELISAVQKCGE---GNWANILRGDFKWDRTASQLSQRWNILRKK 168 (517)
Q Consensus 118 rg~WT~EEDe~Ll~lV~k~G~---gnW~~IAk~~f~pgRT~kQCReRW~nirrr 168 (517)
...||.|||++|..++..|+. ++|..||.. +++||..+|+.||..+.+.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~--V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAA--VGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHH--TTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHH--cCCCCHHHHHHHHHHHHhc
Confidence 457999999999999999985 469999987 8999999999999986443
No 65
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.00 E-value=5.1e-07 Score=77.38 Aligned_cols=63 Identities=2% Similarity=-0.083 Sum_probs=55.8
Q ss_pred CCchhhhhHHHhhhhccccccCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCchhHhhccC-----CCCCCCCCccccCC
Q 010139 153 RTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTT-----AGTTSSATMNNPVP 227 (517)
Q Consensus 153 RT~kQCReRW~nirrr~~~LdP~~IkkgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~L-----PGRTdn~~IKNrWn 227 (517)
..+.=+.+||.+ +|.+. +||.||+..|++++.. |+.+ |..|+.++ ++||..+ ||+||+
T Consensus 15 ~i~~yt~eeY~~------~L~~~-----~WTkEETd~Lf~L~~~---fdlR--W~vI~DRy~~~~~~~Rt~Ed-LK~RyY 77 (93)
T 3hm5_A 15 QVPVYSEQEYQL------YLHDD-----AWTKAETDHLFDLSRR---FDLR--FVVIHDRYDHQQFKKRSVED-LKERYY 77 (93)
T ss_dssp CCCCCCHHHHHH------HTCBT-----TBCHHHHHHHHHHHHH---TTTC--HHHHHHHSCTTTSCCCCHHH-HHHHHH
T ss_pred CCCccCHHHHHH------HcCCC-----CCCHHHHHHHHHHHHH---hCCC--eeeehhhhccCCCCCCCHHH-HHHHHH
Confidence 345678999999 77775 9999999999999999 9999 99999999 5899999 999999
Q ss_pred CCCCC
Q 010139 228 STANA 232 (517)
Q Consensus 228 s~lr~ 232 (517)
...++
T Consensus 78 ~v~~~ 82 (93)
T 3hm5_A 78 HICAK 82 (93)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 86654
No 66
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.90 E-value=1.1e-06 Score=85.82 Aligned_cols=50 Identities=12% Similarity=0.034 Sum_probs=46.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCchhHhhccCCCCCCCCCccccCCCCCCCC
Q 010139 178 SSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAE 233 (517)
Q Consensus 178 kkgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LPGRTdn~~IKNrWns~lr~~ 233 (517)
...+||.||++++++++.. ||+. |..||+++++||.++ |||+|+...++-
T Consensus 132 ~s~~WTeEE~~lFleAl~k---YGKD--W~~IAk~VgTKT~~Q-cKnfY~~~kKRl 181 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRK---YGRD--FQAISDVIGNKSVVQ-VKNFFVNYRRRF 181 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHH---HSSC--HHHHHHHHSSCCHHH-HHHHHHHTTTTT
T ss_pred cCCCCCHHHHHHHHHHHHH---HCcC--HHHHHHHcCCCCHHH-HHHHHHHHHHHh
Confidence 3568999999999999999 9999 999999999999999 999999888774
No 67
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.81 E-value=2.8e-06 Score=69.40 Aligned_cols=50 Identities=8% Similarity=0.083 Sum_probs=43.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCC----CCCchhHhhccCCCCCCCCCccccCCCCCCCC
Q 010139 177 NSSGSQLSEAQLAARHAMSLALDMP----VKNITASCTNTTAGTTSSATMNNPVPSTANAE 233 (517)
Q Consensus 177 IkkgpWT~EED~~Lleav~~al~~G----~kk~Ws~IA~~LPGRTdn~~IKNrWns~lr~~ 233 (517)
...+.||.|||++|.+++.+ || .+ |..||.+| |||..+ |++||..+....
T Consensus 6 ~~~~~WT~eE~k~fe~al~~---~p~~t~~R--W~~IA~~l-gRt~~e-V~~~y~~L~~d~ 59 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMVK---FPGGTPGR--WEKIAHEL-GRSVTD-VTTKAKQLKDSV 59 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---SCTTCTTH--HHHHHHHH-TSCHHH-HHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHH---CCCCCCcH--HHHHHHHh-CCCHHH-HHHHHHHHHHhc
Confidence 56789999999999999999 85 55 99999998 999999 999998765553
No 68
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.69 E-value=4.2e-05 Score=60.61 Aligned_cols=54 Identities=17% Similarity=0.286 Sum_probs=47.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhh
Q 010139 112 MPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRK 167 (517)
Q Consensus 112 l~~rkKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirr 167 (517)
-.++.....||+||-++..+++.+|| .+|..|++. |+++|+..||.+-|...+|
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~-~v~~Kt~~~~v~fYY~wKk 56 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKE-LLPNKETGELITFYYYWKK 56 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHH-SCTTSCHHHHHHHHHHHHC
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHH-HcCCCcHHHHHHHHhcccC
Confidence 36777889999999999999999999 799999983 3899999999998876444
No 69
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.62 E-value=5.8e-06 Score=88.34 Aligned_cols=48 Identities=13% Similarity=0.061 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCchhHhhccCCCCCCCCCccccCCCCCCC
Q 010139 179 SGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANA 232 (517)
Q Consensus 179 kgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LPGRTdn~~IKNrWns~lr~ 232 (517)
...||.||-+++++++.+ ||.. |..|+.++..||..+ ||++|+..-++
T Consensus 380 ~~~WT~eE~~~f~~al~~---yGkd--w~~IA~~VgTKT~~Q-vk~fy~~~kkr 427 (482)
T 2xag_B 380 NARWTTEEQLLAVQAIRK---YGRD--FQAISDVIGNKSVVQ-VKNFFVNYRRR 427 (482)
T ss_dssp CSCCCHHHHHHHHHHHHH---HTTC--HHHHHHHHSSCCHHH-HHHHHHHTTTT
T ss_pred CCCCCHHHHHHHHHHHHH---HCcC--HHHHHHHhCCCCHHH-HHHHHHHHHHH
Confidence 458999999999999999 9998 999999999999999 99998764444
No 70
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.59 E-value=1.5e-05 Score=65.75 Aligned_cols=46 Identities=15% Similarity=0.439 Sum_probs=39.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCC---CcceeecccccccCCchhhhhHHHh
Q 010139 117 KRKPWTAEEDLELISAVQKCGEG---NWANILRGDFKWDRTASQLSQRWNI 164 (517)
Q Consensus 117 Krg~WT~EEDe~Ll~lV~k~G~g---nW~~IAk~~f~pgRT~kQCReRW~n 164 (517)
....||.||+++|..++.+|+.+ +|.+||.. ++|||..+|+.+|..
T Consensus 19 ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~--VpGKT~eEVk~hY~~ 67 (74)
T 4eef_G 19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQY--VKGRTPEEVKKHYEL 67 (74)
T ss_dssp ---CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGG--SCSSCHHHHHGGGC-
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHH--cCCCCHHHHHHHHHH
Confidence 35689999999999999999865 69999997 899999999999964
No 71
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.55 E-value=3.2e-05 Score=82.73 Aligned_cols=49 Identities=24% Similarity=0.372 Sum_probs=45.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhh
Q 010139 116 KKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRK 167 (517)
Q Consensus 116 kKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirr 167 (517)
+...+||.||-.++++++.+|| .+|..||+. +++||..||+..|.++++
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~--VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDV--IGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHH--HSSCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999 799999997 899999999999998655
No 72
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.47 E-value=3.4e-05 Score=66.14 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=44.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCcceeeccc-c--cccCCchhhhhHHHhhhhccc
Q 010139 118 RKPWTAEEDLELISAVQKCGEGNWANILRGD-F--KWDRTASQLSQRWNILRKKHG 170 (517)
Q Consensus 118 rg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~-f--~pgRT~kQCReRW~nirrr~~ 170 (517)
...||.||++.|++++++|| .+|..|+..+ + .++||.-++++||..++++..
T Consensus 30 ~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~ 84 (93)
T 3hm5_A 30 DDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLA 84 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 38999999999999999999 9999999872 0 158999999999998766443
No 73
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.45 E-value=2e-05 Score=65.25 Aligned_cols=60 Identities=20% Similarity=0.366 Sum_probs=45.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCC------C---Ccceeeccc--ccccCCchhhhhHHHhhhhccccccC
Q 010139 115 RKKRKPWTAEEDLELISAVQKCGE------G---NWANILRGD--FKWDRTASQLSQRWNILRKKHGNVIL 174 (517)
Q Consensus 115 rkKrg~WT~EEDe~Ll~lV~k~G~------g---nW~~IAk~~--f~pgRT~kQCReRW~nirrr~~~LdP 174 (517)
|++...||.+|-..|+.+...+.. . .|..||..+ ..-.|++.||+.+|.+|.+....+.-
T Consensus 1 kkR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~ 71 (86)
T 2ebi_A 1 KKRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKH 71 (86)
T ss_dssp CCCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999975321 1 399999871 12379999999999999776555444
No 74
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.28 E-value=8.7e-05 Score=61.02 Aligned_cols=54 Identities=6% Similarity=0.046 Sum_probs=45.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCC--CchhHhhccCCCCCCCCCccccCCCCCCCCcc
Q 010139 178 SSGSQLSEAQLAARHAMSLALDMPVK--NITASCTNTTAGTTSSATMNNPVPSTANAEAS 235 (517)
Q Consensus 178 kkgpWT~EED~~Lleav~~al~~G~k--k~Ws~IA~~LPGRTdn~~IKNrWns~lr~~~s 235 (517)
....||.+|+++|.+++.. |+.. +.|..||..+||||-.+ |+.||..+++...+
T Consensus 7 ~~~~WT~eE~k~fe~ALa~---~~~~tp~rWe~IA~~V~gKT~eE-~~~hY~~l~~~~~s 62 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFAS---LPKHKPGFWSEVAAAVGSRSPEE-CQRKYMENPRGKGS 62 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHH---SCSSSSSHHHHHHHHTTTSCHHH-HHHHHHHSSSSSCC
T ss_pred CCCCCCHHHHHHHHHHHHH---CCCCCccHHHHHHHHcCCCCHHH-HHHHHHHHHhcccc
Confidence 3468999999999999998 7532 24999999999999999 99999988777644
No 75
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.26 E-value=5.7e-05 Score=61.48 Aligned_cols=46 Identities=2% Similarity=-0.144 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHhhcCCCC-CCchhHhhccCCCCCCCCCccccCCCCCC
Q 010139 181 SQLSEAQLAARHAMSLALDMPV-KNITASCTNTTAGTTSSATMNNPVPSTAN 231 (517)
Q Consensus 181 pWT~EED~~Lleav~~al~~G~-kk~Ws~IA~~LPGRTdn~~IKNrWns~lr 231 (517)
-||.|||+.|+..+++ .|. .+-|+.||..| +|+.++ |+|||..+++
T Consensus 16 lWTReeDR~IL~~cq~---~G~s~~tfa~iA~~L-nks~~Q-V~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQK---RGPSSKTFAYLAAKL-DKNPNQ-VSERFQQLMK 62 (70)
Confidence 6999999999999998 776 12399999999 999999 9999987664
No 76
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.07 E-value=0.00051 Score=55.50 Aligned_cols=56 Identities=16% Similarity=0.293 Sum_probs=47.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhhccccc
Q 010139 115 RKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNV 172 (517)
Q Consensus 115 rkKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirrr~~~L 172 (517)
+.....||+||-++...++.+|| .+|..|++. |+++|+..||.+-|...+|...+.
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~-~v~~Kt~~~~v~fYY~wKkt~~y~ 60 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKYG-KDFNDIRQD-FLPWKSLTSIIEYYYMWKTTDRYV 60 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTC-SCHHHHHHT-TCSSSCHHHHHHHHHHHHTCCSSC
T ss_pred ccCCCCCCHHHHHHHHHHHHHhC-ccHHHHHHH-HcCCCCHHHHHHHHHhhcCCchHH
Confidence 35678999999999999999999 799999983 389999999999998766644443
No 77
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.96 E-value=0.00045 Score=58.86 Aligned_cols=49 Identities=12% Similarity=0.131 Sum_probs=43.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhh
Q 010139 116 KKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRK 167 (517)
Q Consensus 116 kKrg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirr 167 (517)
.....||+||.+++.++...|| ++|..|+.. +++||..||-+-|...+|
T Consensus 41 ~~~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~--l~~Kt~~~cV~~YY~~Kk 89 (94)
T 4a69_C 41 QVMNMWSEQEKETFREKFMQHP-KNFGLIASF--LERKTVAECVLYYYLTKK 89 (94)
T ss_dssp HHTCCCCHHHHHHHHHHHHHST-TCHHHHHHT--CTTCCHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHcC-CCHHHHHHH--cCCCCHHHHHHHHhcccc
Confidence 4578999999999999999999 899999876 899999999999876444
No 78
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.75 E-value=0.0019 Score=55.22 Aligned_cols=49 Identities=24% Similarity=0.366 Sum_probs=43.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCC--CCcceeecccccccCCchhhhhHHHhh
Q 010139 115 RKKRKPWTAEEDLELISAVQKCGE--GNWANILRGDFKWDRTASQLSQRWNIL 165 (517)
Q Consensus 115 rkKrg~WT~EEDe~Ll~lV~k~G~--gnW~~IAk~~f~pgRT~kQCReRW~ni 165 (517)
..+-..||.|||+.++...++.|. ..|..||+. +.+|+..|.++||+.|
T Consensus 30 Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~--L~Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 30 GEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQ--LGNKTPVEVSHRFREL 80 (95)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHH--HSSCCHHHHHHHHHHH
T ss_pred CCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHH--HccCCHHHHHHHHHHH
Confidence 346678999999999999999985 369999998 7899999999999974
No 79
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=96.74 E-value=0.00022 Score=55.99 Aligned_cols=51 Identities=2% Similarity=-0.108 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHHhhcCC-----CCCCchhHhhc-cCCCCCCCCCccccCCCCCC
Q 010139 179 SGSQLSEAQLAARHAMSLALDM-----PVKNITASCTN-TTAGTTSSATMNNPVPSTAN 231 (517)
Q Consensus 179 kgpWT~EED~~Lleav~~al~~-----G~kk~Ws~IA~-~LPGRTdn~~IKNrWns~lr 231 (517)
+.+||.|||++|++.|...... |++ .|..++. .+|++|=.+ +++||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~-iwk~la~~~~~~HtwqS-wRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNA-LWKAMEKSSLTQHSWQS-LKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSH-HHHHHHHSCSSSCCSHH-HHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHH-HHHHHHHhHCCCCCHHH-HHHHHHHHcc
Confidence 4689999999999999993211 333 8999999 899999888 9999977665
No 80
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.60 E-value=0.00014 Score=62.11 Aligned_cols=47 Identities=6% Similarity=-0.068 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHHHhhcCCCC-CCchhHhhccCCCCCCCCCccccCCCCCC
Q 010139 181 SQLSEAQLAARHAMSLALDMPV-KNITASCTNTTAGTTSSATMNNPVPSTAN 231 (517)
Q Consensus 181 pWT~EED~~Lleav~~al~~G~-kk~Ws~IA~~LPGRTdn~~IKNrWns~lr 231 (517)
-||.|||+.|+...++ .|. .+-|+.||..|.+|+.++ |+|||+.+++
T Consensus 35 lWTRe~DR~IL~~cQ~---~G~s~~tFa~iA~~L~Nks~nq-V~~RFq~Lm~ 82 (95)
T 1ug2_A 35 LWTREADRVILTMCQE---QGAQPHTFSVISQQLGNKTPVE-VSHRFRELMQ 82 (95)
T ss_dssp SSCHHHHHHHHHHHHH---TTSCTTTHHHHHHHHSSCCHHH-HHHHHHHHHH
T ss_pred EeccccCHHHHHHHHh---cCCChhHHHHHHHHHccCCHHH-HHHHHHHHHH
Confidence 6999999999999999 766 233999999999999999 9999987654
No 81
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.50 E-value=0.00058 Score=69.34 Aligned_cols=106 Identities=11% Similarity=0.093 Sum_probs=76.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhh-----------------------hhc-------
Q 010139 119 KPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL-----------------------RKK------- 168 (517)
Q Consensus 119 g~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~ni-----------------------rrr------- 168 (517)
+.||..+...++.++.+||..+|..||.. +.+.|...++.-+.-+ +.+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~e--v~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~ 188 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKD--VEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKA 188 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTS--STTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHH--hcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999998 7788887775322111 000
Q ss_pred -----ccccc---------CCCCCCCCCCHHHHHHHHHHHHhhcCCCCC--CchhHhh------------ccCCCCCCCC
Q 010139 169 -----HGNVI---------LGSNSSGSQLSEAQLAARHAMSLALDMPVK--NITASCT------------NTTAGTTSSA 220 (517)
Q Consensus 169 -----~~~Ld---------P~~IkkgpWT~EED~~Lleav~~al~~G~k--k~Ws~IA------------~~LPGRTdn~ 220 (517)
..+-+ +. -+...||.+||+.|+-++.. ||.. .+|-.|. -++-.||...
T Consensus 189 l~~Ki~~~~~P~~~L~i~y~~-~k~k~yteeEDRfLL~~l~k---~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~e 264 (304)
T 1ofc_X 189 LDQKMSRYRAPFHQLRLQYGN-NKGKNYTEIEDRFLVCMLHK---LGFDKENVYEELRAAIRASPQFRFDWFIKSRTALE 264 (304)
T ss_dssp HHHHHHTCSSHHHHCCCCCTT-CCCSSCCHHHHHHHHHHHHH---HCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHH
T ss_pred HHHHHHHhcCcHHHhccccCC-CCCCccCHHHHHHHHHHHHH---hcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHH
Confidence 00111 22 35568999999999888888 7762 2699996 2567788888
Q ss_pred CccccCCCCCC
Q 010139 221 TMNNPVPSTAN 231 (517)
Q Consensus 221 ~IKNrWns~lr 231 (517)
|..|.+++++
T Consensus 265 -l~rRc~tLi~ 274 (304)
T 1ofc_X 265 -LQRRCNTLIT 274 (304)
T ss_dssp -HHHHHHHHHH
T ss_pred -HHHHHHHHHH
Confidence 8888776654
No 82
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=96.47 E-value=0.0003 Score=57.97 Aligned_cols=43 Identities=12% Similarity=0.057 Sum_probs=36.2
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCC----CCCchhHhhccCCCCCCCCCccccCC
Q 010139 179 SGSQLSEAQLAARHAMSLALDMP----VKNITASCTNTTAGTTSSATMNNPVP 227 (517)
Q Consensus 179 kgpWT~EED~~Lleav~~al~~G----~kk~Ws~IA~~LPGRTdn~~IKNrWn 227 (517)
...||.+|++++..++.. |+ .+ |.+||..+||||-.+ |+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~---yp~~tpdR--WekIA~~VpGKT~eE-Vk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSF---TNKDTPDR--WKKVAQYVKGRTPEE-VKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSS---SCSSCCSS--STTTGGGSCSSCHHH-HHGGGC
T ss_pred CCCCCHHHHHHHHHHHHH---CCCCCCcH--HHHHHHHcCCCCHHH-HHHHHH
Confidence 358999999999888887 64 36 999999999999998 888874
No 83
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.48 E-value=0.00045 Score=56.23 Aligned_cols=46 Identities=26% Similarity=0.400 Sum_probs=40.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCC--CCcceeecccccccCCchhhhhHHHhh
Q 010139 117 KRKPWTAEEDLELISAVQKCGE--GNWANILRGDFKWDRTASQLSQRWNIL 165 (517)
Q Consensus 117 Krg~WT~EEDe~Ll~lV~k~G~--gnW~~IAk~~f~pgRT~kQCReRW~ni 165 (517)
.-..||.|||+.|+..+++.|. ..|..||.. + +|++.|..+||+.+
T Consensus 13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~--L-nks~~QV~~RF~~L 60 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQKRGPSSKTFAYLAAK--L-DKNPNQVSERFQQL 60 (70)
Confidence 4568999999999999999995 359999987 5 99999999999974
No 84
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.35 E-value=0.0011 Score=52.36 Aligned_cols=50 Identities=0% Similarity=-0.225 Sum_probs=43.4
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCchhHhhc-cCCCCCCCCCccccCCC
Q 010139 172 VILGSNSSGSQLSEAQLAARHAMSLALDMPVKNITASCTN-TTAGTTSSATMNNPVPS 228 (517)
Q Consensus 172 LdP~~IkkgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~-~LPGRTdn~~IKNrWns 228 (517)
-.|. +....||+||-++..+++.+ ||.. |..|++ +|++||-.+ |..+|+.
T Consensus 3 ~~p~-~~~~~WT~eE~~~Fe~~l~~---yGKd--f~~I~~~~v~~Kt~~~-~v~fYY~ 53 (63)
T 2yqk_A 3 SGSS-GIEKCWTEDEVKRFVKGLRQ---YGKN--FFRIRKELLPNKETGE-LITFYYY 53 (63)
T ss_dssp CCCC-CCCCSCCHHHHHHHHHHHHH---TCSC--HHHHHHHSCTTSCHHH-HHHHHHH
T ss_pred CCCC-cCCCCcCHHHHHHHHHHHHH---hCcc--HHHHHHHHcCCCcHHH-HHHHHhc
Confidence 3466 78889999999999999999 9999 999999 699999888 7776653
No 85
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=95.90 E-value=0.0057 Score=49.12 Aligned_cols=55 Identities=22% Similarity=0.188 Sum_probs=46.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCC--cceeecccccccCCchhhhhHHHhhhh
Q 010139 113 PPRKKRKPWTAEEDLELISAVQKCGEGN--WANILRGDFKWDRTASQLSQRWNILRK 167 (517)
Q Consensus 113 ~~rkKrg~WT~EEDe~Ll~lV~k~G~gn--W~~IAk~~f~pgRT~kQCReRW~nirr 167 (517)
..++.+..||+|..+.++++|++.|..+ |+.|.+.+.+++.|..|++.+.++||.
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~ 58 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRV 58 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 3567899999999999999999999332 788988755679999999999998754
No 86
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.17 E-value=0.01 Score=50.94 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=42.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCcceeeccc-c--cccCCchhhhhHHHhhhhc
Q 010139 119 KPWTAEEDLELISAVQKCGEGNWANILRGD-F--KWDRTASQLSQRWNILRKK 168 (517)
Q Consensus 119 g~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~-f--~pgRT~kQCReRW~nirrr 168 (517)
..||.||...|.+++++|+ .+|.-|+..+ + ...|+--++++||..++++
T Consensus 31 ~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~ 82 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICAK 82 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHHHH
Confidence 5799999999999999999 9999999872 1 1479999999999987664
No 87
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=95.07 E-value=0.016 Score=54.35 Aligned_cols=47 Identities=23% Similarity=0.311 Sum_probs=33.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcC--CCCcceeecccccccCCchhhhh
Q 010139 114 PRKKRKPWTAEEDLELISAVQKCG--EGNWANILRGDFKWDRTASQLSQ 160 (517)
Q Consensus 114 ~rkKrg~WT~EEDe~Ll~lV~k~G--~gnW~~IAk~~f~pgRT~kQCRe 160 (517)
++.....||..|=..|+.++.+|| .++|..|+...-+.+++...++.
T Consensus 3 p~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~ 51 (211)
T 4b4c_A 3 PRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRR 51 (211)
T ss_dssp -----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHH
T ss_pred CcccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHH
Confidence 455678899999999999999999 67899998652245666666554
No 88
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=94.50 E-value=0.033 Score=47.28 Aligned_cols=42 Identities=7% Similarity=-0.130 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCchhHhhccCCCCCCCCCccccCC
Q 010139 180 GSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVP 227 (517)
Q Consensus 180 gpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LPGRTdn~~IKNrWn 227 (517)
..||+||.++..+++.. ||.. |..|+.+||+||-.+ |-.+|+
T Consensus 44 ~~WT~eE~~~F~~~~~~---~gK~--F~~Ia~~l~~Kt~~~-cV~~YY 85 (94)
T 4a69_C 44 NMWSEQEKETFREKFMQ---HPKN--FGLIASFLERKTVAE-CVLYYY 85 (94)
T ss_dssp CCCCHHHHHHHHHHHHH---STTC--HHHHHHTCTTCCHHH-HHHHHH
T ss_pred CCCCHHHHHHHHHHHHH---cCCC--HHHHHHHcCCCCHHH-HHHHHh
Confidence 58999999999999999 9999 999999999999777 655544
No 89
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.25 E-value=0.024 Score=53.24 Aligned_cols=31 Identities=26% Similarity=0.511 Sum_probs=27.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCcceeecc
Q 010139 117 KRKPWTAEEDLELISAVQKCGEGNWANILRG 147 (517)
Q Consensus 117 Krg~WT~EEDe~Ll~lV~k~G~gnW~~IAk~ 147 (517)
....||.+||..|+.+|.+||.|+|..|-..
T Consensus 133 ~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D 163 (211)
T 4b4c_A 133 FDIDWGKEDDSNLLIGIYEYGYGSWEMIKMD 163 (211)
T ss_dssp SSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence 3457999999999999999999999998654
No 90
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=94.03 E-value=0.012 Score=47.40 Aligned_cols=43 Identities=2% Similarity=-0.183 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCchhHhhc-cCCCCCCCCCccccCC
Q 010139 179 SGSQLSEAQLAARHAMSLALDMPVKNITASCTN-TTAGTTSSATMNNPVP 227 (517)
Q Consensus 179 kgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~-~LPGRTdn~~IKNrWn 227 (517)
...||+||-++..+++.+ ||.. |..|+. +||+||-.+ |..+|+
T Consensus 8 ~~~WT~eE~~~Fe~~l~~---yGKd--f~~I~~~~v~~Kt~~~-~v~fYY 51 (70)
T 2crg_A 8 MEEWSASEACLFEEALEK---YGKD--FNDIRQDFLPWKSLTS-IIEYYY 51 (70)
T ss_dssp SCCCCHHHHHHHHHHHHH---TCSC--HHHHHHTTCSSSCHHH-HHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH---hCcc--HHHHHHHHcCCCCHHH-HHHHHH
Confidence 358999999999999999 9999 999999 699999888 877766
No 91
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=93.52 E-value=0.021 Score=57.98 Aligned_cols=49 Identities=33% Similarity=0.346 Sum_probs=41.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCC---CCcceeecc----------cccccCCchhhhhHHHhh
Q 010139 117 KRKPWTAEEDLELISAVQKCGE---GNWANILRG----------DFKWDRTASQLSQRWNIL 165 (517)
Q Consensus 117 Krg~WT~EEDe~Ll~lV~k~G~---gnW~~IAk~----------~f~pgRT~kQCReRW~ni 165 (517)
+++.||+|||..|+-++.+||. |+|..|-.. .|+..||+.++..|-..|
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tL 272 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTL 272 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHH
Confidence 5668999999999999999999 999999632 356789999998888874
No 92
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=93.50 E-value=0.027 Score=56.30 Aligned_cols=29 Identities=41% Similarity=0.728 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCcceeecc
Q 010139 119 KPWTAEEDLELISAVQKCGEGNWANILRG 147 (517)
Q Consensus 119 g~WT~EEDe~Ll~lV~k~G~gnW~~IAk~ 147 (517)
..|+.+||..|+.+|.+||.|+|..|...
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~D 197 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDD 197 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence 46999999999999999999999999654
No 93
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=93.08 E-value=0.0095 Score=51.07 Aligned_cols=47 Identities=0% Similarity=-0.127 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCchhHhhccCC-----CCCCCCCccccCCCCCCC
Q 010139 180 GSQLSEAQLAARHAMSLALDMPVKNITASCTNTTA-----GTTSSATMNNPVPSTANA 232 (517)
Q Consensus 180 gpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LP-----GRTdn~~IKNrWns~lr~ 232 (517)
..||.||-..|+++++. |.-+ |..|+..+. .||-.+ +|.||+...++
T Consensus 31 ~~WT~eETd~LfdLc~~---fdlR--w~vI~DRy~~~~~~~RtvEd-LK~RYY~V~~~ 82 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRR---FDLR--FVVIHDRYDHQQFKKRSVED-LKERYYHICAK 82 (93)
T ss_dssp TTBCHHHHHHHHHHHHH---TTTC--HHHHHHHCCTTTSCCCCHHH-HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH---cCCC--eEEEeeccccCCCCCCCHHH-HHHHHHHHHHH
Confidence 57999999999999999 9999 999999984 688888 99999886654
No 94
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=88.71 E-value=0.21 Score=52.14 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=35.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCC---CCcceeecc----------cccccCCchhhhhHHHh
Q 010139 117 KRKPWTAEEDLELISAVQKCGE---GNWANILRG----------DFKWDRTASQLSQRWNI 164 (517)
Q Consensus 117 Krg~WT~EEDe~Ll~lV~k~G~---gnW~~IAk~----------~f~pgRT~kQCReRW~n 164 (517)
+++.||+|||..|+-.+.+||. ++|..|-.. .|+..||+..+..|-..
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~t 287 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNT 287 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHH
Confidence 4568999999999999999999 999999543 12345555555554443
No 95
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=79.17 E-value=4.6 Score=42.15 Aligned_cols=106 Identities=13% Similarity=0.082 Sum_probs=71.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCcceeecccccc-cCCchhhhhHHHhh--------------------------------
Q 010139 119 KPWTAEEDLELISAVQKCGEGNWANILRGDFKW-DRTASQLSQRWNIL-------------------------------- 165 (517)
Q Consensus 119 g~WT~EEDe~Ll~lV~k~G~gnW~~IAk~~f~p-gRT~kQCReRW~ni-------------------------------- 165 (517)
+.||.-+=..++.++.+||..+-..||.. +. +.|...++ ||...
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~e--v~~~Kt~eEV~-~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~ 200 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARE--LAPGKTLEEVR-AYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQ 200 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSS--CCCSSSHHHHH-HHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHH--HccCCCHHHHH-HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999998889999987 54 67766665 22111
Q ss_pred ----hhccccccC----------CCCCCCCCCHHHHHHHHHHHHhhcCCCCC--CchhHhhcc------------CCCCC
Q 010139 166 ----RKKHGNVIL----------GSNSSGSQLSEAQLAARHAMSLALDMPVK--NITASCTNT------------TAGTT 217 (517)
Q Consensus 166 ----rrr~~~LdP----------~~IkkgpWT~EED~~Lleav~~al~~G~k--k~Ws~IA~~------------LPGRT 217 (517)
.+...+-+| ..-+...||.+||+.|+-++.. ||.. ++|-.|-.. |..||
T Consensus 201 ~~L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k---~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT 277 (374)
T 2y9y_A 201 EALRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFK---YGLDRDDVYELVRDEIRDCPLFELDFYFRSRT 277 (374)
T ss_dssp HHHHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHH---HTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCC
T ss_pred HHHHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHH---hccCCCChHHHHHHHHHhCcchhhhHHHhcCC
Confidence 111111122 1014568999999998888888 6652 369888443 46688
Q ss_pred CCCCccccCCCCCC
Q 010139 218 SSATMNNPVPSTAN 231 (517)
Q Consensus 218 dn~~IKNrWns~lr 231 (517)
... |..|.+.+|+
T Consensus 278 ~~E-L~rRc~tLi~ 290 (374)
T 2y9y_A 278 PVE-LARRGNTLLQ 290 (374)
T ss_dssp HHH-HHHHHHHHHH
T ss_pred HHH-HHHHHHHHHH
Confidence 877 7777776554
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=75.84 E-value=6.9 Score=39.01 Aligned_cols=31 Identities=16% Similarity=0.123 Sum_probs=26.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcC--CCCcceeecc
Q 010139 117 KRKPWTAEEDLELISAVQKCG--EGNWANILRG 147 (517)
Q Consensus 117 Krg~WT~EEDe~Ll~lV~k~G--~gnW~~IAk~ 147 (517)
.++.||.-|=..|++.+.+|| ..+|..|+..
T Consensus 2 p~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~d 34 (270)
T 2xb0_X 2 PLGSIGESEVRALYKAILKFGNLKEILDELIAD 34 (270)
T ss_dssp TTCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 367899999999999999999 4679998655
No 97
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=62.65 E-value=0.23 Score=40.64 Aligned_cols=52 Identities=2% Similarity=-0.100 Sum_probs=39.0
Q ss_pred CCCCCHHHHHHHHHHHHhhcC-----CCCCCchhHhhccCC----CCCCCCCccccCCCCCC
Q 010139 179 SGSQLSEAQLAARHAMSLALD-----MPVKNITASCTNTTA----GTTSSATMNNPVPSTAN 231 (517)
Q Consensus 179 kgpWT~EED~~Lleav~~al~-----~G~kk~Ws~IA~~LP----GRTdn~~IKNrWns~lr 231 (517)
...||.+|-.+||+++..... ..++..|..||..|. .||..+ |+++|.++.+
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~q-C~~K~~nL~k 64 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDM-CTDKWRNLLK 64 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHH
Confidence 457999999999999876111 112236999999973 799999 9999987554
No 98
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=36.03 E-value=7.3 Score=31.12 Aligned_cols=45 Identities=9% Similarity=-0.017 Sum_probs=34.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCC-chhHhhccC--CCCCCCCCccccC
Q 010139 178 SSGSQLSEAQLAARHAMSLALDMPVKN-ITASCTNTT--AGTTSSATMNNPV 226 (517)
Q Consensus 178 kkgpWT~EED~~Lleav~~al~~G~kk-~Ws~IA~~L--PGRTdn~~IKNrW 226 (517)
.+-.||+|..+..+++|.. +|..+ -|..|-..| +|.|-.+ |+.|.
T Consensus 6 ~r~~WT~elH~~Fv~Av~~---LG~~~AtPk~Il~~M~v~gLT~~~-VkSHL 53 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDH---LGVERAVPKKILDLMNVDKLTREN-VASHL 53 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHH---HCTTTCCHHHHHHHHCCTTCCHHH-HHHHH
T ss_pred CCCcCCHHHHHHHHHHHHH---hCCCCCCcHHHHHHcCCCCCCHHH-HHHHH
Confidence 3457999999999999999 77442 377888876 6777666 66553
No 99
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=26.59 E-value=25 Score=30.90 Aligned_cols=60 Identities=8% Similarity=0.072 Sum_probs=41.8
Q ss_pred HHHHHHHHHcCC-------CCcceeecccccccC---CchhhhhHHHhhhhccccccCCCCCCCCCCHHHHHHHHHHHHh
Q 010139 127 LELISAVQKCGE-------GNWANILRGDFKWDR---TASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAMSL 196 (517)
Q Consensus 127 e~Ll~lV~k~G~-------gnW~~IAk~~f~pgR---T~kQCReRW~nirrr~~~LdP~~IkkgpWT~EED~~Lleav~~ 196 (517)
-.|...|.+.|. +.|..|+..+-++.- .....|..|.+ +|.|= ...+++|-..|.+-|..
T Consensus 45 ~~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k------~L~~Y----E~~~~~e~~~l~~~v~~ 114 (121)
T 2rq5_A 45 ACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQ------YLLSY----DSLSPEEHRRLEKEVLM 114 (121)
T ss_dssp HHHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHT------THHHH----HHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHH------HhHHH----HCcCHHHHhhHHHHHHH
Confidence 357777777772 469999998322321 23577888888 88885 45888888888776654
No 100
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=26.14 E-value=47 Score=31.10 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=18.8
Q ss_pred CCCCCCCCCHHHHHHHH--------HHHHHcC
Q 010139 114 PRKKRKPWTAEEDLELI--------SAVQKCG 137 (517)
Q Consensus 114 ~rkKrg~WT~EEDe~Ll--------~lV~k~G 137 (517)
|.-.+|-||+|+|+.|+ ++++|||
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG 141 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG 141 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC
Confidence 44578999999999875 5667777
No 101
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=22.70 E-value=36 Score=30.12 Aligned_cols=49 Identities=8% Similarity=0.010 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhh------ccccccCC
Q 010139 124 EEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRK------KHGNVILG 175 (517)
Q Consensus 124 EEDe~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirr------r~~~LdP~ 175 (517)
+-|.+|+.+.++.|.-.|..||+. -|-+...|+.|+..+.. ....+||.
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~---lg~s~~tv~~rl~~L~~~g~i~~~~a~~~~~ 57 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKK---VGLSTTPCWRRIQKMEEDGVIRRRVALLDPV 57 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHH---HTCCHHHHHHHHHHHHHTTSSCCCCCCCCTT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHH---HCcCHHHHHHHHHHHHHCCCeeeceeeeCHH
Confidence 568899999999998899999997 37899999999998733 44556665
No 102
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=21.56 E-value=14 Score=31.24 Aligned_cols=45 Identities=11% Similarity=-0.079 Sum_probs=30.1
Q ss_pred HHHHHHHHHHcCCCCcceeecccccccCCchhhhhHHHhhhhccccccCCC------CCCCCCCHHHHHHH
Q 010139 126 DLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGS------NSSGSQLSEAQLAA 190 (517)
Q Consensus 126 De~Ll~lV~k~G~gnW~~IAk~~f~pgRT~kQCReRW~nirrr~~~LdP~~------IkkgpWT~EED~~L 190 (517)
+.+|.++|..|| |..++.. +. -++...||.. ++|.+|-.+.-+.|
T Consensus 18 E~ilt~Lv~~YG---W~~L~~~--i~---------------I~CF~~~PSikSSLKFLRKTpWAR~KVE~l 68 (88)
T 2jvw_A 18 QKLLTELVEHYG---WEELSYM--VN---------------INCFKKDPSIKSSLKFLRKTDWARERVENI 68 (88)
T ss_dssp HHHHHHHHHHTC---HHHHHHH--TT---------------SSSTTSSCCHHHHHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---HHHHHhh--cc---------------cccCCCCCchHHHHHHHhcCHhHHHHHHHH
Confidence 489999999999 9988876 22 1222455651 35678887666554
Done!