BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010141
(517 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YUD|A Chain A, Solution Structure Of The Yth Domain In Yth Domain-
Containing Protein 1 (Putative Splicing Factor Yt521)
Length = 180
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 76/145 (52%), Gaps = 12/145 (8%)
Query: 259 DAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASG 318
DA+FF+IKS + ++V + +W++ P KKL+ A+R A+ V L+FSV SG
Sbjct: 25 DARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARS------VILIFSVRESG 78
Query: 319 QFVGVAEMVGPVDFDKTVEYW-----QQDKWVG-CFPLKWLIIKDVPNSSLRHITLENNE 372
+F G A + + +W K +G F + W+ +++P + H+T NE
Sbjct: 79 KFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNE 138
Query: 373 NKPVTNSRDTQEVNFEIGIQILKIF 397
+KPV RD QE+ E G Q+ +F
Sbjct: 139 HKPVKIGRDGQEIELECGTQLCLLF 163
>pdb|2YU6|A Chain A, Solution Structure Of The Yth Domain In Yth Domain-
Containing Protein 2
Length = 141
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 79/141 (56%), Gaps = 7/141 (4%)
Query: 258 SDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNAS 317
S ++FI+KS + ++ S + +W++TP+ +KL+ A+ E+ V+L+FSV S
Sbjct: 6 SGVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWES------SIVYLVFSVQGS 59
Query: 318 GQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVT 377
G F G + M + +K+ + W G F ++W+ + +P H+ N+NK V
Sbjct: 60 GHFQGFSRMSSEIGREKSQD-WGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQ 118
Query: 378 NSRDTQEVNFEIGIQILKIFK 398
SRD QE+ ++G Q+L++++
Sbjct: 119 ISRDGQELEPQVGEQLLQLWE 139
>pdb|2HOR|A Chain A, Crystal Structure Of Alliinase From Garlic- Apo Form
pdb|2HOX|A Chain A, Alliinase From Allium Sativum (Garlic)
pdb|2HOX|B Chain B, Alliinase From Allium Sativum (Garlic)
pdb|2HOX|C Chain C, Alliinase From Allium Sativum (Garlic)
pdb|2HOX|D Chain D, Alliinase From Allium Sativum (Garlic)
Length = 427
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 352 WLIIKD--VPNSSLRHITLENNENKPVTNSRDTQEVNFEIGIQILKIFKSHSSKRCILDD 409
W +IKD V N+ L ++T +N E P R+TQ + ++ +++ + K+ L+
Sbjct: 262 WALIKDESVYNNLLNYMT-KNTEGTP----RETQLRSLKVLKEVVAMVKTQKGTMRDLNT 316
Query: 410 FGFYEARER 418
FGF + RER
Sbjct: 317 FGFKKLRER 325
>pdb|1LK9|A Chain A, The Three-Dimensional Structure Of Alliinase From Garlic
pdb|1LK9|B Chain B, The Three-Dimensional Structure Of Alliinase From Garlic
Length = 448
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 352 WLIIKD--VPNSSLRHITLENNENKPVTNSRDTQEVNFEIGIQILKIFKSHSSKRCILDD 409
W +IKD V N+ L ++T +N E P R+TQ + ++ +++ + K+ L+
Sbjct: 262 WALIKDESVYNNLLNYMT-KNTEGTP----RETQLRSLKVLKEVVAMVKTQKGTMRDLNT 316
Query: 410 FGFYEARER 418
FGF + RER
Sbjct: 317 FGFKKLRER 325
>pdb|2HYX|A Chain A, Structure Of The C-Terminal Domain Of Dipz From
Mycobacterium Tuberculosis
pdb|2HYX|B Chain B, Structure Of The C-Terminal Domain Of Dipz From
Mycobacterium Tuberculosis
pdb|2HYX|C Chain C, Structure Of The C-Terminal Domain Of Dipz From
Mycobacterium Tuberculosis
pdb|2HYX|D Chain D, Structure Of The C-Terminal Domain Of Dipz From
Mycobacterium Tuberculosis
Length = 352
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 60 SYQDPGYSFDGIHSPITWLDTSIFGGGQSKHNANAGYTSPISHSNNFPSGRNQNHR 115
+Y+D G + G+H+P + G +K AN G + PI+ NN+ + N +R
Sbjct: 110 AYKDSGLAVIGVHTPEYAFEK--VPGNVAKGAANLGISYPIALDNNYATWTNYRNR 163
>pdb|3MZY|A Chain A, The Crystal Structure Of The Rna Polymerase Sigma-H Factor
F Fusobacterium Nucleatum To 2.5a
Length = 164
Score = 28.9 bits (63), Expect = 8.1, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 227 NLKSSESTPEDNLPL---IPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWT 283
N KSSES PE+ L I + +K+S +F + + ++I+ YS ++ + N+
Sbjct: 81 NYKSSESNPEEAYLLKEEIEEFKKFSENNFSKFEKEVLTYLIRGYSYREIATILSKNL-- 138
Query: 284 STPNGNKKLDAAYREAKEKSSD 305
K +D + ++KS +
Sbjct: 139 ------KSIDNTIQRIRKKSEE 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.132 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,358,313
Number of Sequences: 62578
Number of extensions: 833473
Number of successful extensions: 1054
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1048
Number of HSP's gapped (non-prelim): 21
length of query: 517
length of database: 14,973,337
effective HSP length: 103
effective length of query: 414
effective length of database: 8,527,803
effective search space: 3530510442
effective search space used: 3530510442
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)