BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010141
(517 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4R5D9|YTHD2_MACFA YTH domain family protein 2 OS=Macaca fascicularis GN=YTHDF2 PE=2
SV=1
Length = 579
Score = 211 bits (537), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 105/196 (53%), Positives = 129/196 (65%), Gaps = 6/196 (3%)
Query: 225 GQNLKSSESTPEDNLPLIPDKEK---YSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNM 281
GQ+ S STP + P++ Y+ +DF + + FIIKSYSEDD+H+S+KYN+
Sbjct: 372 GQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNI 431
Query: 282 WTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQ 341
W ST +GNK+LDAAYR K PV+LLFSVN SG F GVAEM VD++ W Q
Sbjct: 432 WCSTEHGNKRLDAAYRSMNGKG---PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQ 488
Query: 342 DKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVNFEIGIQILKIFKSHS 401
DKW G F ++W+ +KDVPNS LRHI LENNENKPVTNSRDTQEV E Q+LKI S+
Sbjct: 489 DKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYK 548
Query: 402 SKRCILDDFGFYEARE 417
I DDF YE R+
Sbjct: 549 HTTSIFDDFSHYEKRQ 564
>sp|Q0VCZ3|YTHD2_BOVIN YTH domain family protein 2 OS=Bos taurus GN=YTHDF2 PE=2 SV=1
Length = 580
Score = 211 bits (537), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 105/196 (53%), Positives = 128/196 (65%), Gaps = 6/196 (3%)
Query: 225 GQNLKSSESTPEDNLPLIPDKEK---YSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNM 281
GQ S STP + P++ Y+ +DF + + FIIKSYSEDD+H+S+KYN+
Sbjct: 373 GQTQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNI 432
Query: 282 WTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQ 341
W ST +GNK+LDAAYR K PV+LLFSVN SG F GVAEM VD++ W Q
Sbjct: 433 WCSTEHGNKRLDAAYRSMNGKG---PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQ 489
Query: 342 DKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVNFEIGIQILKIFKSHS 401
DKW G F ++W+ +KDVPNS LRHI LENNENKPVTNSRDTQEV E Q+LKI S+
Sbjct: 490 DKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYK 549
Query: 402 SKRCILDDFGFYEARE 417
I DDF YE R+
Sbjct: 550 HTTSIFDDFSHYEKRQ 565
>sp|Q9Y5A9|YTHD2_HUMAN YTH domain family protein 2 OS=Homo sapiens GN=YTHDF2 PE=1 SV=2
Length = 579
Score = 211 bits (537), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 105/196 (53%), Positives = 129/196 (65%), Gaps = 6/196 (3%)
Query: 225 GQNLKSSESTPEDNLPLIPDKEK---YSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNM 281
GQ+ S STP + P++ Y+ +DF + + FIIKSYSEDD+H+S+KYN+
Sbjct: 372 GQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNI 431
Query: 282 WTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQ 341
W ST +GNK+LDAAYR K PV+LLFSVN SG F GVAEM VD++ W Q
Sbjct: 432 WCSTEHGNKRLDAAYRSMNGKG---PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQ 488
Query: 342 DKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVNFEIGIQILKIFKSHS 401
DKW G F ++W+ +KDVPNS LRHI LENNENKPVTNSRDTQEV E Q+LKI S+
Sbjct: 489 DKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYK 548
Query: 402 SKRCILDDFGFYEARE 417
I DDF YE R+
Sbjct: 549 HTTSIFDDFSHYEKRQ 564
>sp|P59326|YTHD1_MOUSE YTH domain family protein 1 OS=Mus musculus GN=Ythdf1 PE=2 SV=1
Length = 559
Score = 202 bits (514), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 95/170 (55%), Positives = 119/170 (70%), Gaps = 3/170 (1%)
Query: 248 YSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCP 307
Y+ ++F + + FIIKSYSEDD+H+S+KY++W ST +GNK+LD A+R SS P
Sbjct: 377 YNPKEFDWNLKSGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDGAFRSM---SSKGP 433
Query: 308 VFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHIT 367
V+LLFSVN SG F GVAEM PVD+ + W QDKW G F +KW+ +KDVPN+ LRHI
Sbjct: 434 VYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDKWKGKFDVKWIFVKDVPNNQLRHIR 493
Query: 368 LENNENKPVTNSRDTQEVNFEIGIQILKIFKSHSSKRCILDDFGFYEARE 417
LENN+NKPVTNSRDTQEV E Q+LKI S+ I DDF YE R+
Sbjct: 494 LENNDNKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQ 543
>sp|Q9BYJ9|YTHD1_HUMAN YTH domain family protein 1 OS=Homo sapiens GN=YTHDF1 PE=1 SV=1
Length = 559
Score = 201 bits (511), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 94/170 (55%), Positives = 120/170 (70%), Gaps = 3/170 (1%)
Query: 248 YSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCP 307
Y+ ++F + + FIIKSYSEDD+H+S+KY++W ST +GNK+LD+A+R SS P
Sbjct: 377 YNPKEFEWNLKSGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDSAFRCM---SSKGP 433
Query: 308 VFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHIT 367
V+LLFSVN SG F GVAEM PVD+ + W QDKW G F ++W+ +KDVPN+ LRHI
Sbjct: 434 VYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDKWKGKFDVQWIFVKDVPNNQLRHIR 493
Query: 368 LENNENKPVTNSRDTQEVNFEIGIQILKIFKSHSSKRCILDDFGFYEARE 417
LENN+NKPVTNSRDTQEV E Q+LKI S+ I DDF YE R+
Sbjct: 494 LENNDNKPVTNSRDTQEVPLEKAKQVLKIISSYKHTTSIFDDFAHYEKRQ 543
>sp|Q8BYK6|YTHD3_MOUSE YTH domain family protein 3 OS=Mus musculus GN=Ythdf3 PE=1 SV=2
Length = 585
Score = 196 bits (497), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 93/167 (55%), Positives = 116/167 (69%), Gaps = 3/167 (1%)
Query: 248 YSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCP 307
Y+ +DF + + + FIIKSYSEDD+H+S+KY++W ST +GNK+LDAAYR K P
Sbjct: 404 YNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG---P 460
Query: 308 VFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHIT 367
++LLFSVN SG F GVAEM VD++ W QDKW G F +KW+ +KDVPN+ LRHI
Sbjct: 461 LYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIR 520
Query: 368 LENNENKPVTNSRDTQEVNFEIGIQILKIFKSHSSKRCILDDFGFYE 414
LENN+NKPVTNSRDTQEV E Q+LKI + I DDF YE
Sbjct: 521 LENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYE 567
>sp|Q5RFL8|YTHD3_PONAB YTH domain family protein 3 OS=Pongo abelii GN=YTHDF3 PE=2 SV=1
Length = 585
Score = 196 bits (497), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 93/167 (55%), Positives = 116/167 (69%), Gaps = 3/167 (1%)
Query: 248 YSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCP 307
Y+ +DF + + + FIIKSYSEDD+H+S+KY++W ST +GNK+LDAAYR K P
Sbjct: 404 YNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG---P 460
Query: 308 VFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHIT 367
++LLFSVN SG F GVAEM VD++ W QDKW G F +KW+ +KDVPN+ LRHI
Sbjct: 461 LYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIR 520
Query: 368 LENNENKPVTNSRDTQEVNFEIGIQILKIFKSHSSKRCILDDFGFYE 414
LENN+NKPVTNSRDTQEV E Q+LKI + I DDF YE
Sbjct: 521 LENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYE 567
>sp|Q7Z739|YTHD3_HUMAN YTH domain family protein 3 OS=Homo sapiens GN=YTHDF3 PE=1 SV=1
Length = 585
Score = 196 bits (497), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 93/167 (55%), Positives = 116/167 (69%), Gaps = 3/167 (1%)
Query: 248 YSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCP 307
Y+ +DF + + + FIIKSYSEDD+H+S+KY++W ST +GNK+LDAAYR K P
Sbjct: 404 YNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG---P 460
Query: 308 VFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHIT 367
++LLFSVN SG F GVAEM VD++ W QDKW G F +KW+ +KDVPN+ LRHI
Sbjct: 461 LYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIR 520
Query: 368 LENNENKPVTNSRDTQEVNFEIGIQILKIFKSHSSKRCILDDFGFYE 414
LENN+NKPVTNSRDTQEV E Q+LKI + I DDF YE
Sbjct: 521 LENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYE 567
>sp|Q06390|YD374_YEAST YTH domain-containing protein YDR374C OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YDR374C PE=4 SV=1
Length = 306
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 98/157 (62%), Gaps = 9/157 (5%)
Query: 259 DAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASG 318
+++FF+IKS S V +S +W+ST GNK+L AY K+ +S VFL FS+N SG
Sbjct: 154 NSRFFVIKSSSLKHVKRSFYNGIWSSTHFGNKRLSEAY---KKLNSGAKVFLFFSINTSG 210
Query: 319 QFVGVAEMVGPVDFDKTVEYWQQDKWVG-CFPLKWLIIKDVPNSSLRHITLENNENKPVT 377
+F GVAEMV + D W+ ++ G F ++W+I++D+ N SL+ + +NE KP+T
Sbjct: 211 RFCGVAEMVSDLKMDLDTSIWEDEQKYGKAFKVRWVIVRDINNRSLKRFLIPSNEMKPIT 270
Query: 378 NSRDTQEVNFEIGIQILKIFKSHSSKRCILDDFGFYE 414
+SRDTQE+ + IGI I+ +FK+ S D F F +
Sbjct: 271 HSRDTQEIPYSIGISIINLFKTQDS-----DIFSFLD 302
>sp|Q96MU7|YTDC1_HUMAN YTH domain-containing protein 1 OS=Homo sapiens GN=YTHDC1 PE=1 SV=3
Length = 727
Score = 82.8 bits (203), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 76/145 (52%), Gaps = 12/145 (8%)
Query: 259 DAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASG 318
DA+FF+IKS + ++V + +W++ P KKL+ A+R A+ V L+FSV SG
Sbjct: 354 DARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARS------VILIFSVRESG 407
Query: 319 QFVGVAEMVGPVDFDKTVEYW-----QQDKWVG-CFPLKWLIIKDVPNSSLRHITLENNE 372
+F G A + + +W K +G F + W+ +++P + H+T NE
Sbjct: 408 KFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNE 467
Query: 373 NKPVTNSRDTQEVNFEIGIQILKIF 397
+KPV RD QE+ E G Q+ +F
Sbjct: 468 HKPVKIGRDGQEIELECGTQLCLLF 492
>sp|Q9QY02|YTDC1_RAT YTH domain-containing protein 1 OS=Rattus norvegicus GN=Ythdc1 PE=1
SV=1
Length = 738
Score = 82.8 bits (203), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 76/145 (52%), Gaps = 12/145 (8%)
Query: 259 DAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASG 318
DA+FF+IKS + ++V + +W++ P KKL+ A+R A+ V L+FSV SG
Sbjct: 357 DARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARS------VILIFSVRESG 410
Query: 319 QFVGVAEMVGPVDFDKTVEYW-----QQDKWVG-CFPLKWLIIKDVPNSSLRHITLENNE 372
+F G A + + +W K +G F + W+ +++P + H+T NE
Sbjct: 411 KFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNE 470
Query: 373 NKPVTNSRDTQEVNFEIGIQILKIF 397
+KPV RD QE+ E G Q+ +F
Sbjct: 471 HKPVKIGRDGQEIELECGTQLCLLF 495
>sp|Q5R746|YTDC2_PONAB YTH domain-containing protein 2 OS=Pongo abelii GN=YTHDC2 PE=2 SV=1
Length = 671
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 78/139 (56%), Gaps = 7/139 (5%)
Query: 260 AKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQ 319
++FI+KS + ++ S + +W++TP+ +KL+ A+ E+ V+L+FSV SG
Sbjct: 529 VRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSM------VYLVFSVQGSGH 582
Query: 320 FVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNS 379
F G + M + +K+ + W G F ++W+ + +P H+ N+NK V S
Sbjct: 583 FQGFSRMSSEIGREKS-QDWGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQIS 641
Query: 380 RDTQEVNFEIGIQILKIFK 398
RD QE+ ++G Q+L++++
Sbjct: 642 RDGQELEPQVGEQLLQLWE 660
>sp|B2RR83|YTDC2_MOUSE Probable ATP-dependent RNA helicase YTHDC2 OS=Mus musculus GN=Ythdc2
PE=2 SV=1
Length = 1445
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 78/138 (56%), Gaps = 7/138 (5%)
Query: 261 KFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQF 320
++FI+KS + ++ S + +W++TP+ +KL+ A+ E+ V+L+FSV SG F
Sbjct: 1304 RYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSM------VYLVFSVQGSGHF 1357
Query: 321 VGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSR 380
G + M + +K+ + W G F ++W+ + +P H+ N+NK V SR
Sbjct: 1358 QGFSRMSSEIGREKS-QDWGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISR 1416
Query: 381 DTQEVNFEIGIQILKIFK 398
D QE+ ++G Q+L++++
Sbjct: 1417 DGQELEPQVGEQLLQLWE 1434
>sp|Q9H6S0|YTDC2_HUMAN Probable ATP-dependent RNA helicase YTHDC2 OS=Homo sapiens GN=YTHDC2
PE=1 SV=2
Length = 1430
Score = 66.6 bits (161), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 77/139 (55%), Gaps = 7/139 (5%)
Query: 260 AKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQ 319
++FI+KS + ++ S + +W++TP+ +KL+ A+ E+ V+L+FSV SG
Sbjct: 1288 VRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESS------IVYLVFSVQGSGH 1341
Query: 320 FVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNS 379
F G + M + +K+ + W G F ++W+ + +P H+ N+NK V S
Sbjct: 1342 FQGFSRMSSEIGREKS-QDWGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQIS 1400
Query: 380 RDTQEVNFEIGIQILKIFK 398
RD QE+ +G Q+L++++
Sbjct: 1401 RDGQELEPLVGEQLLQLWE 1419
>sp|A9LNK9|CPSF_ARATH Cleavage and polyadenylation specificity factor CPSF30
OS=Arabidopsis thaliana GN=CPSF30 PE=1 SV=1
Length = 631
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 78/164 (47%), Gaps = 15/164 (9%)
Query: 241 LIP---DKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYR 297
LIP D+ + P+ + ++F++KS + ++ SV+ +W + + KL+ A+
Sbjct: 217 LIPNPADQTNRTSHPLPQGVN--RYFVVKSNNRENFELSVQQGVWATQRSNEAKLNEAFD 274
Query: 298 EAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQD----KWVGCFPLKWL 353
+ V L+FSVN + F G A+M + W+ + ++ F +KWL
Sbjct: 275 SVEN------VILIFSVNRTRHFQGCAKMTSRIGGYIGGGNWKHEHGTAQYGRNFSVKWL 328
Query: 354 IIKDVPNSSLRHITLENNENKPVTNSRDTQEVNFEIGIQILKIF 397
+ ++ R++ NEN PV SRD QE+ +G Q+ +
Sbjct: 329 KLCELSFHKTRNLRNPYNENLPVKISRDCQELEPSVGEQLASLL 372
>sp|Q0DA50|C3H45_ORYSJ Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa
subsp. japonica GN=Os06g0677700 PE=2 SV=1
Length = 665
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 67/142 (47%), Gaps = 10/142 (7%)
Query: 260 AKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQ 319
+++FI+KS + +++ SV+ +W + + KL+ A+ + V L+FS+N +
Sbjct: 260 SRYFIVKSCNRENLEISVQQGIWATQRSNEAKLNEAFESIEN------VILIFSINRTRN 313
Query: 320 FVGVAEMVGPVDFDKTVEYWQQDKWVGC----FPLKWLIIKDVPNSSLRHITLENNENKP 375
F G A+M + W+ F ++WL + ++ H+ N+N P
Sbjct: 314 FQGCAKMTSRIGGYIGGGNWKSAHGTAHYGRNFSIQWLKLCELSFQKTHHLRNPYNDNLP 373
Query: 376 VTNSRDTQEVNFEIGIQILKIF 397
V SRD QE+ IG Q+ +
Sbjct: 374 VKISRDCQELEPFIGEQLASLL 395
>sp|O74958|MMI1_SCHPO YTH domain-containing protein mmi1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mmi1 PE=1 SV=3
Length = 488
Score = 40.0 bits (92), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/147 (18%), Positives = 67/147 (45%), Gaps = 13/147 (8%)
Query: 260 AKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQ 319
+++FI+ +E + + K ++W + +K++ AY++A V+ +F +
Sbjct: 350 SRYFIMLCDNETAIAHAKKTSIWAVKKDSSKRISDAYKKAS-------VYFIFVAQQTYN 402
Query: 320 FVGVAEMVGPVDFDKT-VEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTN 378
+G A++V D + T + +W G +KW+ ++ ++ + I + +
Sbjct: 403 ALGYAQVVS--DLNSTELPFWSDSSHAGGVRIKWIKTCNLFSAEISEIVSHMDHG---SE 457
Query: 379 SRDTQEVNFEIGIQILKIFKSHSSKRC 405
+RD E+ ++ G ++ + KR
Sbjct: 458 ARDGMEMMYDEGSRLCTLINYAIMKRI 484
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.131 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 222,086,642
Number of Sequences: 539616
Number of extensions: 10864428
Number of successful extensions: 23964
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 80
Number of HSP's that attempted gapping in prelim test: 23809
Number of HSP's gapped (non-prelim): 193
length of query: 517
length of database: 191,569,459
effective HSP length: 122
effective length of query: 395
effective length of database: 125,736,307
effective search space: 49665841265
effective search space used: 49665841265
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)