Query 010141
Match_columns 517
No_of_seqs 192 out of 358
Neff 3.6
Searched_HMMs 46136
Date Thu Mar 28 21:31:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010141.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010141hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1901 Uncharacterized high-g 100.0 6.3E-80 1.4E-84 645.3 27.6 292 130-429 176-468 (487)
2 PF04146 YTH: YT521-B-like dom 100.0 3.2E-50 7E-55 362.8 9.0 136 259-400 1-140 (140)
3 KOG1902 Putative signal transd 100.0 9.3E-43 2E-47 352.1 10.7 149 246-402 60-213 (441)
4 PRK00809 hypothetical protein; 94.1 0.28 6E-06 45.8 8.4 122 261-394 2-142 (144)
5 PF01878 EVE: EVE domain; Int 77.8 7.6 0.00017 35.0 6.6 128 261-396 1-143 (143)
6 PRK02268 hypothetical protein; 25.6 1.5E+02 0.0033 28.1 5.4 90 261-363 3-100 (141)
7 PF10539 Dev_Cell_Death: Devel 18.4 4.9E+02 0.011 24.7 7.1 116 268-397 8-130 (130)
8 KOG0921 Dosage compensation co 15.3 1.4E+03 0.031 28.6 11.3 11 142-152 1206-1216(1282)
9 PF10200 Ndufs5: NADH:ubiquino 13.8 2.1E+02 0.0045 25.8 3.3 37 406-442 59-95 (96)
10 PF08683 CAMSAP_CKK: Microtubu 13.3 4.4E+02 0.0095 24.6 5.4 52 269-323 13-64 (123)
No 1
>KOG1901 consensus Uncharacterized high-glucose-regulated protein [General function prediction only]
Probab=100.00 E-value=6.3e-80 Score=645.33 Aligned_cols=292 Identities=57% Similarity=0.919 Sum_probs=260.1
Q ss_pred CCCCcCCcccCCcCcccCCCcccCCCCCCCCCCCCCCCCCccccCCCcccCCCCCCCCCCCCC-CCcccccccCCCCCCC
Q 010141 130 AFGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPVDSKYKPRGRGYGASGSGK-ENVDGLNELNKGPRAK 208 (517)
Q Consensus 130 ~~~~~~~~y~~~~~y~~~g~~~~~~~~~gs~~~~~~~~~~~w~~~~~k~~~r~~~~~~~~~~~-~~~d~~~e~nrgpra~ 208 (517)
..+|.+.++....+|+.+..+...+..|+...|.....+|+|..+++..+..+... .....+ ...+.++|+|||||+.
T Consensus 176 ~~~~~~~~~~~~~~~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~nrg~~s~ 254 (487)
T KOG1901|consen 176 AQGYYDQFSSQPGLYGSYQPTGGSGPPYGQSLYANQPKGRSPYGVDNSRPTWGINY-PRLPSDEAGSDSLNEQNRGPRSS 254 (487)
T ss_pred ccccccccccCcccccCccccCCCCCccCcccccccccCCCCcccCCCcccccccC-CCccccccccccccccccCcccc
Confidence 67888999998889999988888899999999999999999999986444333322 222333 3378999999999999
Q ss_pred CCCCCCCCCCchhccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEEecCChhhHHHHHhcCeeecCCch
Q 010141 209 GFKNQEGFDPATVAAKGQNLKSSESTPEDNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNG 288 (517)
Q Consensus 209 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qyN~~df~~~~~~ARFFVIKS~nEdNIhkSIKygVWaSTp~n 288 (517)
.++++.........+... +.......++++++||+++|.+.+.+|||||||||+|||||+||||+|||+|+++
T Consensus 255 ~~~~~~~~~~~~~~~~~~-------s~~~~~~~~~~~~~yn~~~f~~~~~nAkfFVIKSySEDdVHkSIKY~vWsST~~G 327 (487)
T KOG1901|consen 255 DSRGQDINSSGPTEAGSA-------SAPESNESVKRRDRYNPPDFLTDYSNAKFFVIKSYSEDDVHKSIKYNVWSSTLNG 327 (487)
T ss_pred cccCccccCCcchhcccc-------ccccccccccChhhcCccccccccccceEEEEeccChhhhhhhcccceeecccCC
Confidence 998887655533332221 1212235788999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCEEEEEEecCCCCeeeeEEeeCCCCCCCCcccccccccccccceeEEEeecCCCCccccccc
Q 010141 289 NKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITL 368 (517)
Q Consensus 289 nkKLd~AFreA~ek~~~~pVyLfFSVN~SG~FqG~AeM~SpVDf~k~~~~WqqdKw~G~F~VkWl~VkDVPf~~lrHI~N 368 (517)
|||||+||++++.+.++||||||||||+||||||||||++||||+++++||+||||.|.|+|+||+||||||..|+||++
T Consensus 328 NKkLdaAYreak~~~~~cPvfLfFSVNaSGqFCGvAEMvgPVdfn~~~~~WqQDKW~G~FpVKWhiVKDVPNs~lrHI~L 407 (487)
T KOG1901|consen 328 NKKLDAAYREAKKKSGKCPVFLFFSVNASGQFCGVAEMVGPVDFNKDMEYWQQDKWSGSFPVKWHIVKDVPNSQLRHIIL 407 (487)
T ss_pred chhhHHHHHHhhhccCCCCceEEEEEcCCccccceeeeccceecccccchhhhcccceecceeeEEEeeCCccceeEEEe
Confidence 99999999999988899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeecCCCceechHHHHHHHHHhhhCCCCCccccchHhHHHHHHHHHHHHHHhhh
Q 010141 369 ENNENKPVTNSRDTQEVNFEIGIQILKIFKSHSSKRCILDDFGFYEARERIMQQKKAKQHQ 429 (517)
Q Consensus 369 ~~NENKPVt~SRDGQEIe~e~G~qLLkIF~~~~s~tSIlDDF~~Ye~rek~~~~~r~~~~~ 429 (517)
++|||||||++||+|||.+++|++||+||+.|.++|||||||.|||.||+.|+++|+|+..
T Consensus 408 eNNeNKPVTnSRDTQEV~leqGievlkIfk~y~~~TSiLDDf~~Ye~rq~~~~~~k~r~~~ 468 (487)
T KOG1901|consen 408 ENNENKPVTNSRDTQEVPLEQGIEVLKIFKSYAAKTSILDDFGFYEERQKIIQDKKARQPP 468 (487)
T ss_pred ecCCCCCcccccccceecHHHHHHHHHHHHhhcceeeecccccchHHHHHHhhhcccccCc
Confidence 9999999999999999999999999999999999999999999999999999999998864
No 2
>PF04146 YTH: YT521-B-like domain; InterPro: IPR007275 A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells []. It has been speculated that in higher eukaryotic YTH-family members may be involved in similar mechanaisms to suppress gene regulation during gametogenesis or general silencing. The rat protein YT521-B, Q9QY02 from SWISSPROT, is a tyrosine-phosphorylated nuclear protein, that interacts with the nuclear transcriptosomal component scaffold attachment factor B, and the 68kDa Src substrate associated during mitosis, Sam68. In vivo splicing assays demonstrated that YT521-B modulates alternative splice site selection in a concentration-dependent manner []. The domain is predicted to have four alpha helices and six beta strands []. In plant cells environmental stimuli, which light, pathogens, hormones, and abiotic stresses, elicit changes in the cytosolic Ca levels but little is known of the cytosolic-nuclear Ca-signaling pathway; where gene regulation occurs to respond appropriately to the stress. It has been demonstrated that two novel Arabidopsis thaliana (Mouse-ear cress) proteins, (ECT1 and ECT2), specifically associated with Calcineurin B-Like-Interacting Protein Kinase1 (CIPK1), a member of Ser/Thr protein kinases that interact with the calcineurin B-like Ca-binding proteins. These two proteins contain a very similar C-terminal region (180 amino acids in length, 81% similarity), which is required and sufficient for both interaction with CIPK1 and translocation to the nucleus. This domain, the YTH-domain, is conserved across all eukaryotes and suggests that the conserved C-terminal region plays a critical role in relaying the cytosolic Ca-signals to the nucleus, thereby regulating gene expression [].; PDB: 2YUD_A 2YU6_A.
Probab=100.00 E-value=3.2e-50 Score=362.81 Aligned_cols=136 Identities=50% Similarity=0.912 Sum_probs=114.4
Q ss_pred CceEEEEecCChhhHHHHHhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEecCCCCeeeeEEeeCCCCCCCCccc
Q 010141 259 DAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEY 338 (517)
Q Consensus 259 ~ARFFVIKS~nEdNIhkSIKygVWaSTp~nnkKLd~AFreA~ek~~~~pVyLfFSVN~SG~FqG~AeM~SpVDf~k~~~~ 338 (517)
++|||||||++++||++|++||||+|+++++++|++||+++ ++||||||||+||+|||||+|+|+++++....+
T Consensus 1 ~~rfFiiKS~~~~ni~~s~~~gvW~t~~~~~~~L~~Af~~~------~~V~L~FSvn~S~~F~G~A~M~s~~~~~~~~~~ 74 (140)
T PF04146_consen 1 NARFFIIKSFNEENIHLSIKYGVWATQPKNEKKLNEAFKES------RNVYLFFSVNGSGHFQGYARMTSPIDPDSPKPF 74 (140)
T ss_dssp --EEEEEEESSCHHHHHHHHCTEEE--CCCHHHHHHHHHHS------S-EEEEEEETTTSEEEEEEEEECECCSSS----
T ss_pred CcEEEEEEECCHHHHHHHHhCCEEcccccchHHHHHHHHhC------CCEEEEEeecCcceEEEEEEEccCCCCcccCcc
Confidence 57999999999999999999999999999999999999998 589999999999999999999999999999999
Q ss_pred cc----ccccccccceeEEEeecCCCCcccccccCCCCCCceeecCCCceechHHHHHHHHHhhhC
Q 010141 339 WQ----QDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVNFEIGIQILKIFKSH 400 (517)
Q Consensus 339 Wq----qdKw~G~F~VkWl~VkDVPf~~lrHI~N~~NENKPVt~SRDGQEIe~e~G~qLLkIF~~~ 400 (517)
|. ..+|.|.|+|+||++++|||+.++||+|++||||||+++||||||++++|++||+||+++
T Consensus 75 w~~~~~~~~~~g~F~v~Wl~~~~lpf~~~~hl~n~~n~~~pV~~~rDgqEi~~~~G~~l~~~f~~~ 140 (140)
T PF04146_consen 75 WQQDSSSSKWGGPFRVEWLRVKDLPFSKLRHLRNPLNENKPVKISRDGQEIEPEIGEQLLKIFDNQ 140 (140)
T ss_dssp --SS-SGCGG-SEEEEEEEE-S-EEHHHHTT-EETTTTTEETTS--TTEEE-CCHHHHHHHHCGT-
T ss_pred ccccccccccCCceEEEEEECCcCChHHhcccccccCCCcEEEECCCCEEeCHHHHHHHHHHHhhC
Confidence 95 369999999999999999999999999999999999999999999999999999999863
No 3
>KOG1902 consensus Putative signal transduction protein involved in RNA splicing [Signal transduction mechanisms; RNA processing and modification]
Probab=100.00 E-value=9.3e-43 Score=352.07 Aligned_cols=149 Identities=36% Similarity=0.599 Sum_probs=138.4
Q ss_pred CCCCCCCCCCCCCCceEEEEecCChhhHHHHHhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEecCCCCeeeeEE
Q 010141 246 EKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAE 325 (517)
Q Consensus 246 ~qyN~~df~~~~~~ARFFVIKS~nEdNIhkSIKygVWaSTp~nnkKLd~AFreA~ek~~~~pVyLfFSVN~SG~FqG~Ae 325 (517)
+++++...+. ..+|||||||.|.+||.+|++.|||+|++.|++||+.||+++ ..||||||||.||||||||+
T Consensus 60 ~~~~~ss~~~--~~~rYFIiKS~N~eN~elSvqkGiWaTq~sNE~kLn~AF~~s------~~ViLIFSVn~SghFQG~Ar 131 (441)
T KOG1902|consen 60 DQTSKLKYVL--QDARYFIIKSNNHENVELSVQKGVWSTQPSNEKKLNLAFRSS------RSVILIFSVNESGHFQGFAR 131 (441)
T ss_pred hhcccccccC--CceEEEEEecCCccceeeehhcceeccccccHHHHHHHHhhc------CcEEEEEEecccccchhhhh
Confidence 5555555444 588999999999999999999999999999999999999998 68999999999999999999
Q ss_pred eeCCCCCCCCcccccc-----cccccccceeEEEeecCCCCcccccccCCCCCCceeecCCCceechHHHHHHHHHhhhC
Q 010141 326 MVGPVDFDKTVEYWQQ-----DKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVNFEIGIQILKIFKSH 400 (517)
Q Consensus 326 M~SpVDf~k~~~~Wqq-----dKw~G~F~VkWl~VkDVPf~~lrHI~N~~NENKPVt~SRDGQEIe~e~G~qLLkIF~~~ 400 (517)
|+|+|...++-..|.+ ..|++.|+||||++++|||.++.||+|||||||||++|||||||++++|+|||.|+...
T Consensus 132 MsS~IG~~~~q~~W~~~~G~~a~~G~~FkVkWiRl~eLpFqkt~hL~NP~NdnkpVKISRD~QELep~VGEqL~~Ll~~~ 211 (441)
T KOG1902|consen 132 MSSEIGHGGSQIHWVLPAGMSAMLGGVFKVKWIRLRELPFQKTAHLTNPWNENKPVKISRDGQELEPEVGEQLCLLLPPD 211 (441)
T ss_pred hcchhccCCCCccccccCCcccccCceeeEeEEeeccccchhhhhcCCcccccCceeecccccccChhHHHHHHHhcCCC
Confidence 9999998888877875 67999999999999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 010141 401 SS 402 (517)
Q Consensus 401 ~s 402 (517)
+.
T Consensus 212 p~ 213 (441)
T KOG1902|consen 212 PS 213 (441)
T ss_pred cc
Confidence 65
No 4
>PRK00809 hypothetical protein; Provisional
Probab=94.06 E-value=0.28 Score=45.77 Aligned_cols=122 Identities=15% Similarity=0.158 Sum_probs=73.6
Q ss_pred eEEEEecCChhhHHHHHhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEec------CCCCeeeeEEeeCCCCCCC
Q 010141 261 KFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVN------ASGQFVGVAEMVGPVDFDK 334 (517)
Q Consensus 261 RFFVIKS~nEdNIhkSIKygVWaSTp~nnkKLd~AFreA~ek~~~~pVyLfFSVN------~SG~FqG~AeM~SpVDf~k 334 (517)
+|+|+=+ |+||+......|||-.....- +|-... .....+||++-+ .-..|.|+|++++..-.+.
T Consensus 2 ~yWi~~~-~~~~~~~~~~~gv~g~~~~~r-----n~lr~M---k~GD~v~fYhs~~~~~~~~~~~ivgi~eV~~~~y~D~ 72 (144)
T PRK00809 2 TYWLCIT-NEDNWEVIKDKNVWGVPERYK-----NTIEKV---KPGDKLIIYVSQEYGAERLPGKIVGIYEVVSEWYEDS 72 (144)
T ss_pred ceEEEec-CHHHHHHHHhCCEeecchhhh-----hHHhhC---CCCCEEEEEECCccCCCCCCceEEEEEEEecCcccCC
Confidence 6777766 899999999999999964322 222221 124677788877 4789999999998752222
Q ss_pred Cccccc------ccccccccceeEEEeec--CCCCcc----cccccCCCCCCce-eecCCCceechHHHHHHH
Q 010141 335 TVEYWQ------QDKWVGCFPLKWLIIKD--VPNSSL----RHITLENNENKPV-TNSRDTQEVNFEIGIQIL 394 (517)
Q Consensus 335 ~~~~Wq------qdKw~G~F~VkWl~VkD--VPf~~l----rHI~N~~NENKPV-t~SRDGQEIe~e~G~qLL 394 (517)
..+|. .+.+--..+|+++...+ ||...| .-|++.-.=...+ ..++ .||..+.-..|+
T Consensus 73 -t~~~p~~~~~~~~~~p~rvdV~~~~~~~~~v~l~~L~~~L~fik~~~~w~~~l~R~~~--~~I~~~d~~~I~ 142 (144)
T PRK00809 73 -TPIFPAEPVRPKEIYPYRVKLKPVKIFEEPIDFKPLIPKLKFIENKKQWSGHLRNRAM--RPIPEEDYKLIE 142 (144)
T ss_pred -ccCCCccccCCCCCceEEEEEEEeeecCCcccHHHHHhhhhhhhcccccchhhhcCCC--ccCCHHHHHHHh
Confidence 12332 12222467899988877 776555 1112211101222 4555 777766655444
No 5
>PF01878 EVE: EVE domain; InterPro: IPR002740 The EVE domain is part of the wider PUA domain superfamily. The function of this domain is not known but, given the structural similarities to PUA, is likely to involve RNA binding []. ; PDB: 2G2X_B 2AR1_A 3EOP_A 2EVE_A 2HD9_A 2ZBN_A 1WMM_A 2P5D_A 2GBS_A 1ZCE_A.
Probab=77.82 E-value=7.6 Score=35.04 Aligned_cols=128 Identities=16% Similarity=0.223 Sum_probs=62.0
Q ss_pred eEEEEecC----ChhhHHHHHhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEec-CCCCeeeeEEeeCCCCCCCC
Q 010141 261 KFFIIKSY----SEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVN-ASGQFVGVAEMVGPVDFDKT 335 (517)
Q Consensus 261 RFFVIKS~----nEdNIhkSIKygVWaSTp~nnkKLd~AFreA~ek~~~~pVyLfFSVN-~SG~FqG~AeM~SpVDf~k~ 335 (517)
+|+|+|+. +-+++ .-....+|.-..+...+- .++..+ . ..-+||+.-. ..+.|.|+++.++..-.+..
T Consensus 1 ~YWl~~~~P~~~~~~~~-~~~~~~~~~gv~~~~~~~--~l~~mk---~-GD~vifY~s~~~~~~ivai~~V~~~~~~d~~ 73 (143)
T PF01878_consen 1 RYWLLKANPENFSIDDL-EHWGVTVWDGVRNYQARK--NLKRMK---P-GDKVIFYHSGCKERGIVAIGEVVSEPYPDPT 73 (143)
T ss_dssp -EEEEEEBTTTSHHHHH-HHHSEEECHTEEEHHHHH--HHHC-----T-T-EEEEEETSSSS-EEEEEEEEEEEEEE-GG
T ss_pred CEEEEEeCCcccCHHHh-cccceEEEcCEeehhhhh--hhhcCC---C-CCEEEEEEcCCCCCEEEEEEEEeccccCCCc
Confidence 58999998 66666 444555565443322222 445442 2 3455666656 67999999999987422211
Q ss_pred -----cccccccc--cccccceeEEEeec--CCCCcccccccCCCCCCceeec-CCCceechHHHHHHHHH
Q 010141 336 -----VEYWQQDK--WVGCFPLKWLIIKD--VPNSSLRHITLENNENKPVTNS-RDTQEVNFEIGIQILKI 396 (517)
Q Consensus 336 -----~~~WqqdK--w~G~F~VkWl~VkD--VPf~~lrHI~N~~NENKPVt~S-RDGQEIe~e~G~qLLkI 396 (517)
..++.... .....+|+++..-+ |+...|+.. ..+.+-.-+... .--.+|..+.-..|++|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~pi~l~~Lk~~-~~l~~l~~i~~~r~s~~~it~~~~~~I~~~ 143 (143)
T PF01878_consen 74 AFDPDSPYYDPKSNPKPYRVDVEYVKIFEKPIPLKELKAE-PELENLSFIRNKRLSVFPITEEDFEAIMEM 143 (143)
T ss_dssp GTSTTSTTBTTTSCSSSEEEEEEEEEEEEEEEEHHHHHC--GGGTTSHHHHTTT-SEEEE-HHHHHHHHHH
T ss_pred cccccccCcCCccCCCeeEEEEEEEEecCCCcCHHHHhcC-CccccChhhhcCCcCeEEECHHHHHHHHhC
Confidence 11122111 23366788886544 444555432 011111111111 23456666666666553
No 6
>PRK02268 hypothetical protein; Provisional
Probab=25.57 E-value=1.5e+02 Score=28.15 Aligned_cols=90 Identities=13% Similarity=0.228 Sum_probs=55.6
Q ss_pred eEEEEecCChhhHHHHHhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEec-------CCCCeeeeEEeeCCCCCC
Q 010141 261 KFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVN-------ASGQFVGVAEMVGPVDFD 333 (517)
Q Consensus 261 RFFVIKS~nEdNIhkSIKygVWaSTp~nnkKLd~AFreA~ek~~~~pVyLfFSVN-------~SG~FqG~AeM~SpVDf~ 333 (517)
+|.|+ .-|+||+.+.++.|+|-. .|+.+ +..+.. + ...-+|++|=. .-..|.+++++++.--+.
T Consensus 3 ~yWI~-v~s~~hv~~g~~~gf~qv-~hgK~---apl~Rm--k--pGD~ivyYsp~~~~~~~~~~qaftAig~V~~~~~Yq 73 (141)
T PRK02268 3 RYWIG-VVSAEHVRRGVEGGFMQV-CHGKA---APLRRM--K--PGDWIIYYSPKTTFGGKDKLQAFTAIGKVKDDEPYQ 73 (141)
T ss_pred ceEEE-EccHHHHHHHHhCCEEEe-CCCcc---chhhcC--C--CCCEEEEEeceEecCCCcccceEEEEEEEcCCceEe
Confidence 45543 457999999999999977 44432 122222 1 24567777722 347899999999863222
Q ss_pred CCcccccccccc-cccceeEEEeecCCCCcc
Q 010141 334 KTVEYWQQDKWV-GCFPLKWLIIKDVPNSSL 363 (517)
Q Consensus 334 k~~~~WqqdKw~-G~F~VkWl~VkDVPf~~l 363 (517)
..+. ..|. =.++|+|+.+.++|+.-|
T Consensus 74 ~~m~----~~f~P~Rr~v~~~~~~e~pi~pL 100 (141)
T PRK02268 74 VEMA----PGFIPWRRDVDYYPCAETPIRPL 100 (141)
T ss_pred cccC----CCceeEEEEeeEeecCccchHHh
Confidence 1110 1111 145799999999998654
No 7
>PF10539 Dev_Cell_Death: Development and cell death domain; InterPro: IPR013989 The DCD (Development and Cell Death) domain is found in plant proteins involved in development and cell death. The DCD domain is an ~130 amino acid long stretch that contains several mostly invariable motifs. These include a FGLP and a LFL motif at the N terminus and a PAQV and a PLxE motif towards the C terminus of the domain. The DCD domain is present in proteins with different architectures. Some of these proteins contain additional recognizable motifs, like the KELCH repeats or the ParB domain []. Biological studies indicate a role of these proteins in phytohormone response, embryo development and programmed cell death by pathogens or ozone. The predicted secondary structure of the DCD domain is mostly composed of beta strands and confined by an alpha-helix at the N- and at the C terminus []. Proteins known to contain a DCD domain are listed below: Carrot B2 protein. Pea Gda-1 protein. Soybean N-rich protein (NRP).
Probab=18.42 E-value=4.9e+02 Score=24.66 Aligned_cols=116 Identities=13% Similarity=0.249 Sum_probs=77.0
Q ss_pred CChhhHHHHHhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEecCCCCeeeeEEeeCCCCCCCCcccccccc----
Q 010141 268 YSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDK---- 343 (517)
Q Consensus 268 ~nEdNIhkSIKygVWaSTp~nnkKLd~AFreA~ek~~~~pVyLfFSVN~SG~FqG~AeM~SpVDf~k~~~~WqqdK---- 343 (517)
+|.+-+....++.+.-...... + |-+. ...+-++|||= -...+..|+=|-+|.-..+....-|..+.
T Consensus 8 Cn~~T~~ECf~~~lFGLP~~~~---~--~V~~--I~pG~~LFLfn--~~~r~L~GifeA~S~G~~ni~p~Af~~~~~~~~ 78 (130)
T PF10539_consen 8 CNNKTKPECFRRQLFGLPAGHK---D--FVKK--IKPGMPLFLFN--YSDRKLYGIFEATSDGGMNIEPYAFSGSGSGES 78 (130)
T ss_pred ECCCCHHHHHhcccccCChhhh---h--HHhe--eCCCCEEEEEE--cCCCEEEEEEEecCCCccCcChhhhCCCCCCCc
Confidence 4455567777888877765421 1 2121 22345676653 36899999999999877777777787632
Q ss_pred -c--ccccceeEEEeecCCCCcccccccCCCCCCceeecCCCceechHHHHHHHHHh
Q 010141 344 -W--VGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVNFEIGIQILKIF 397 (517)
Q Consensus 344 -w--~G~F~VkWl~VkDVPf~~lrHI~N~~NENKPVt~SRDGQEIe~e~G~qLLkIF 397 (517)
+ .=.|.|.| ....||-+.++|++-++-..+. +=-.||...+-..||.||
T Consensus 79 ~fPAQVrf~i~~-~C~PL~E~~fk~aI~~Ny~~~~----kF~~eLs~~Qv~~L~~LF 130 (130)
T PF10539_consen 79 PFPAQVRFRIRW-DCPPLPESQFKPAIKDNYYDKN----KFRFELSHQQVRKLLSLF 130 (130)
T ss_pred ccceEEEEEEee-eeecCCHHHHHHHHHHhCCCCC----cccCcCCHHHHHHHHHhC
Confidence 2 22566767 5668888999998854322221 335899999999999987
No 8
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=15.35 E-value=1.4e+03 Score=28.60 Aligned_cols=11 Identities=27% Similarity=0.289 Sum_probs=5.0
Q ss_pred cCcccCCCccc
Q 010141 142 PMYGHYGNTFR 152 (517)
Q Consensus 142 ~~y~~~g~~~~ 152 (517)
+-||+.++.++
T Consensus 1206 GGYGgsa~~~~ 1216 (1282)
T KOG0921|consen 1206 GGYGGSAPSAR 1216 (1282)
T ss_pred CCCCCCCCCCC
Confidence 34544444443
No 9
>PF10200 Ndufs5: NADH:ubiquinone oxidoreductase, NDUFS5-15kDa; InterPro: IPR019342 Proteins in this entry form part of the NADH:ubiquinone oxidoreductase complex I. Complex I is the first multisubunit inner membrane protein complex of the mitochondrial electron transport chain and it transfers two electrons from NADH to ubiquinone. The mammalian complex I is composed of 45 different subunits. The proteins in this entry represent a component of the iron-sulphur (IP) fragment of the enzyme, that is not involved in catalysis. These proteins carry four highly conserved cysteine residues, but these do not appear to be in a configuration which would favour metal binding, so the exact function of the protein is uncertain [].
Probab=13.76 E-value=2.1e+02 Score=25.81 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=27.0
Q ss_pred cccchHhHHHHHHHHHHHHHHhhhhhhhhcCCCCCCc
Q 010141 406 ILDDFGFYEARERIMQQKKAKQHQLQRQVSDGKPSDV 442 (517)
Q Consensus 406 IlDDF~~Ye~rek~~~~~r~~~~~~~k~~~~~~~~~~ 442 (517)
+++||.-==-+.|+++.-++-+++..|++.+|+-+.+
T Consensus 59 e~EDy~EClh~~Ke~~R~~aI~kqR~K~~keGk~tpp 95 (96)
T PF10200_consen 59 ELEDYYECLHHTKEMKRMRAIRKQRDKQIKEGKYTPP 95 (96)
T ss_pred HHhHHHHHHhhHHHHHHHHHHHHHHHHHHHccCCCCC
Confidence 4666655556677887777777888899999986653
No 10
>PF08683 CAMSAP_CKK: Microtubule-binding calmodulin-regulated spectrin-associated; InterPro: IPR014797 This is the C-terminal domain of a family of eumetazoan proteins collectively defined as calmodulin-regulated spectrin-associated, or CAMSAP, proteins. CAMSAP proteins carry an N-terminal region that includes the CH domain, a central region including a predicted coiled-coil and this C-terminal, or CKK, domain - defined as being present in CAMSAP, KIAA1078 and KIAA1543, The C-terminal domain is the part of the CAMSAP proteins that binds to microtubules. The domain appears to act by producing inhibition of neurite extension, probably by blocking microtubule function. CKK represents a domain that has evolved with the metazoa []. The structure of a murine hypothetical protein from RIKEN cDNA has shown the domain to adopt a mainly beta barrel structure with an associated alpha-helical hairpin. ; PDB: 1UGJ_A.
Probab=13.27 E-value=4.4e+02 Score=24.56 Aligned_cols=52 Identities=25% Similarity=0.374 Sum_probs=0.0
Q ss_pred ChhhHHHHHhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEecCCCCeeee
Q 010141 269 SEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGV 323 (517)
Q Consensus 269 nEdNIhkSIKygVWaSTp~nnkKLd~AFreA~ek~~~~pVyLfFSVN~SG~FqG~ 323 (517)
|..-|+.||++-+-+ -+.|++..+.|.++. +++...+++++|. ...-+|.|+
T Consensus 13 Nr~iI~nAL~~~~La-G~vN~~~r~~~l~~~-~~s~~~hflILfr-d~~~~fRgl 64 (123)
T PF08683_consen 13 NRRIIHNALSHCCLA-GPVNEKQRNKALEEM-SKSEANHFLILFR-DAGCQFRGL 64 (123)
T ss_dssp -HHHHHHHHHHTTT--SSTTHHHHHHHHHHH-HHS--S-EEEEES-SSS-SEEEE
T ss_pred hHHHHHHHHHHhcCC-CccCHHHHHHHHHHH-hhCCCCeEEEEEe-cCCCceEEE
Done!