Query 010141
Match_columns 517
No_of_seqs 192 out of 358
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 20:47:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010141.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010141hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yud_A YTH domain-containing p 100.0 3.2E-56 1.1E-60 417.7 9.1 166 240-420 8-179 (180)
2 2yu6_A YTH domain-containing p 100.0 3.6E-54 1.2E-58 389.9 11.3 138 256-400 4-141 (141)
3 2hd9_A UPF0310 protein PH1033; 96.0 0.019 6.4E-07 51.8 8.1 125 261-397 2-144 (145)
4 2p5d_A UPF0310 protein mjecl36 94.7 0.029 9.8E-07 50.7 4.8 126 260-396 4-147 (147)
5 2eve_A Hypothetical protein ps 46.2 87 0.003 29.0 8.7 131 261-400 2-152 (157)
6 3eop_A Thymocyte nuclear prote 34.5 84 0.0029 29.7 6.8 132 261-398 2-168 (176)
7 2ar1_A Hypothetical protein; s 31.5 1.9E+02 0.0065 27.1 8.6 131 259-397 18-166 (172)
8 2jvf_A De novo protein M7; tet 15.1 29 0.00098 29.1 -0.4 15 375-389 9-23 (96)
9 3goe_A DNA repair protein RAD6 11.0 2.5E+02 0.0087 23.6 4.1 45 263-313 12-56 (82)
10 2gbs_A Hypothetical protein RP 9.6 5.2E+02 0.018 23.5 6.0 64 261-330 2-70 (145)
No 1
>2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=3.2e-56 Score=417.67 Aligned_cols=166 Identities=30% Similarity=0.525 Sum_probs=156.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEEEecCChhhHHHHHhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEecCCCC
Q 010141 240 PLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQ 319 (517)
Q Consensus 240 ~~~~~~~qyN~~df~~~~~~ARFFVIKS~nEdNIhkSIKygVWaSTp~nnkKLd~AFreA~ek~~~~pVyLfFSVN~SG~ 319 (517)
...++++|||+.+++. +++|||||||++++|||+|++||||+||++||++|++||+++ .+||||||||+||+
T Consensus 8 ~~~~~~~~~~~~~~~~--~~arfFIIKS~s~~ni~~Sik~gvWatt~~n~~kL~~Af~~~------~~V~L~FSVn~Sg~ 79 (180)
T 2yud_A 8 VRAVRKDQTSKLKYVL--QDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSA------RSVILIFSVRESGK 79 (180)
T ss_dssp CCCCCCCSSHHHHHHT--TTCEEEEEEESCHHHHHHHHHHTEECCCHHHHHHHHHHHHHS------SCEEEEEEETTTSE
T ss_pred hhhcchhhcccccccc--CceEEEEEEeCCHHHHHHHHHcCEeecccccHHHHHHHHhhC------CeEEEEEEeCCCCc
Confidence 4456889999988774 799999999999999999999999999999999999999998 58999999999999
Q ss_pred eeeeEEeeCCCCCCCCccccc------ccccccccceeEEEeecCCCCcccccccCCCCCCceeecCCCceechHHHHHH
Q 010141 320 FVGVAEMVGPVDFDKTVEYWQ------QDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVNFEIGIQI 393 (517)
Q Consensus 320 FqG~AeM~SpVDf~k~~~~Wq------qdKw~G~F~VkWl~VkDVPf~~lrHI~N~~NENKPVt~SRDGQEIe~e~G~qL 393 (517)
|||||+|+|+++++....+|+ +++|+|.|+|+||+++||||..++||+|+|||||||+++||||||++++|++|
T Consensus 80 F~G~A~M~s~~~~~~~~~~W~~~~~~~~~~~~g~F~V~Wi~~~dvPf~~~~hl~n~~NenkpV~~sRDgqEI~~~~G~~L 159 (180)
T 2yud_A 80 FQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQL 159 (180)
T ss_dssp EEEEEEEEEEEECSSCCCCCCCCSSCCGGGGCSEEEEEEEECSCEEHHHHTTCCBTTTTSBCTTSCCTTEEECHHHHHHH
T ss_pred EEEEEEEccCCCCCCCCccccccCccchhhcCCceEEEEEEeecCCchhhhhccccccCCCeeeeCCCCEEcCHHHHHHH
Confidence 999999999999998888997 46799999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCccccchHhHHHHHHHH
Q 010141 394 LKIFKSHSSKRCILDDFGFYEARERIM 420 (517)
Q Consensus 394 LkIF~~~~s~tSIlDDF~~Ye~rek~~ 420 (517)
|+||+.+ ++|++|+.|+|..
T Consensus 160 ~~lf~~~-------~~~~~~~~~~~~~ 179 (180)
T 2yud_A 160 CLLFPPD-------ESIDLYQVIHKMR 179 (180)
T ss_dssp HHHSCCC-------SSSCSHHHHHHHH
T ss_pred HHhcccC-------cCccHHHHHHhhc
Confidence 9999886 5899999999864
No 2
>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=3.6e-54 Score=389.88 Aligned_cols=138 Identities=30% Similarity=0.552 Sum_probs=132.9
Q ss_pred CCCCceEEEEecCChhhHHHHHhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEecCCCCeeeeEEeeCCCCCCCC
Q 010141 256 SYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKT 335 (517)
Q Consensus 256 ~~~~ARFFVIKS~nEdNIhkSIKygVWaSTp~nnkKLd~AFreA~ek~~~~pVyLfFSVN~SG~FqG~AeM~SpVDf~k~ 335 (517)
...++|||||||+++||||+|++||||+||++||++|++||+++ .+||||||||+||+|||||+|+|++|+ ..
T Consensus 4 ~~~~~rfFIiKS~s~~ni~~S~k~gvW~tt~~~~~~L~~Af~~~------~~V~L~FSvn~Sg~F~G~A~M~s~~~~-~~ 76 (141)
T 2yu6_A 4 GSSGVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWES------SIVYLVFSVQGSGHFQGFSRMSSEIGR-EK 76 (141)
T ss_dssp CCCCCEEEEEEESSSHHHHHHHHTCEEECCTTSHHHHHHHHHHS------SCEEEEEEESSSSEECEEEEECSCSSS-CC
T ss_pred CCCCcEEEEEEeCCHHHHHHHHHcCEeeccCccHHHHHHHHhcC------CcEEEEEEECCCCeEEEEEEEcccCCC-CC
Confidence 35789999999999999999999999999999999999999998 599999999999999999999999999 66
Q ss_pred cccccccccccccceeEEEeecCCCCcccccccCCCCCCceeecCCCceechHHHHHHHHHhhhC
Q 010141 336 VEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVNFEIGIQILKIFKSH 400 (517)
Q Consensus 336 ~~~WqqdKw~G~F~VkWl~VkDVPf~~lrHI~N~~NENKPVt~SRDGQEIe~e~G~qLLkIF~~~ 400 (517)
..+|++++|+|.|+|+||+++||||..++||+|++||||||+++||||||++++|++||+||+++
T Consensus 77 ~~~W~~~~~~g~F~V~Wi~~~~vpf~~~~hl~n~~N~nk~V~~~RDgqEi~~~~G~~l~~if~~~ 141 (141)
T 2yu6_A 77 SQDWGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERL 141 (141)
T ss_dssp CCCCSCSCCCCEEEEEEEECSCEEHHHHTSCEETTSTTEETTCCCTTEEECTTHHHHHHGGGGTC
T ss_pred CccccccccCCcEEEEEEEeecCChHHhhhcccccCCCCeEEeCCCCEEcCHHHHHHHHHHHhhC
Confidence 67899999999999999999999999999999999999999999999999999999999999864
No 3
>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=96.02 E-value=0.019 Score=51.84 Aligned_cols=125 Identities=14% Similarity=0.196 Sum_probs=80.2
Q ss_pred eEEEEecCChhhHHHHHhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEecCC--------CCeeeeEEeeCCCCC
Q 010141 261 KFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNAS--------GQFVGVAEMVGPVDF 332 (517)
Q Consensus 261 RFFVIKS~nEdNIhkSIKygVWaSTp~nnkKLd~AFreA~ek~~~~pVyLfFSVN~S--------G~FqG~AeM~SpVDf 332 (517)
+|.|+|| +.|++....+.|+|-. .+.-+. |-... .....+|||+-+.. ..|.|++++++..-.
T Consensus 2 ~YWL~ks-s~d~~~~~~~~g~~GV-n~~arn----~lr~m---k~GD~~~fYhs~~~~~~~~~~~~~ivGi~eV~~e~y~ 72 (145)
T 2hd9_A 2 TYWICIT-NRENWEVIKRHNVWGV-PKKHKN----TLSRV---KPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYV 72 (145)
T ss_dssp CEEEEEE-CHHHHHHHHHHCEEEE-CGGGHH----HHTTC---CTTCEEEEEECCEECTTCCEECCEEEEEEEECSCCEE
T ss_pred ceEEEeC-CHHHHHHHHHcCcccc-CHHHHH----HHHhC---CCCCEEEEEEccccccCCCCCCceEEEEEEEcCCcEe
Confidence 6999999 8999999999999977 554332 22221 12457777876655 799999999986532
Q ss_pred CCCccccc-----ccccccccceeEEEeecCCCCcccccccCCCCC-----CceeecCCCceechHHHHHHHHHh
Q 010141 333 DKTVEYWQ-----QDKWVGCFPLKWLIIKDVPNSSLRHITLENNEN-----KPVTNSRDTQEVNFEIGIQILKIF 397 (517)
Q Consensus 333 ~k~~~~Wq-----qdKw~G~F~VkWl~VkDVPf~~lrHI~N~~NEN-----KPVt~SRDGQEIe~e~G~qLLkIF 397 (517)
+.+ .+|- .+..--...|+++.+..||+..+.. .+.+=.| .++ .-+--++|+.+....||+.+
T Consensus 73 D~t-~~~~~~~~~~~~~p~rv~v~~v~~~~i~~~~l~~-~l~fi~~k~~w~~~l-~r~gv~pV~~~d~~~I~~~m 144 (145)
T 2hd9_A 73 DFS-RIFKPHRGGKETYPYRVKIKPIKIGEINFKPLIN-DLKFIKNKKRWSMHF-FGKAMRELPEEDYKLIEKLL 144 (145)
T ss_dssp CCC-CCSCCTTSSCCCCCEEEEEEEEEEEEEESGGGGG-GCTTCCCSTTGGGGT-TTCSEEEECHHHHHHHHHHC
T ss_pred CCC-ccCCCcccccCCeeEEEeCEEEeeccCcHHHHHh-hhhhhccccccccee-cccCceEcCHHHHHHHHHhh
Confidence 221 1222 2211124568888889998877664 3332222 122 02337999999999998754
No 4
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}
Probab=94.72 E-value=0.029 Score=50.71 Aligned_cols=126 Identities=16% Similarity=0.153 Sum_probs=76.2
Q ss_pred ceEEEEecCChhhHHHHHhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEec------CCCCeeeeEEeeCCCCCC
Q 010141 260 AKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVN------ASGQFVGVAEMVGPVDFD 333 (517)
Q Consensus 260 ARFFVIKS~nEdNIhkSIKygVWaSTp~nnkKLd~AFreA~ek~~~~pVyLfFSVN------~SG~FqG~AeM~SpVDf~ 333 (517)
.+|.|+|+. ++++...++.|+|-. .+.-+. |-... .- ....|||... .-..|.|++++++..-.+
T Consensus 4 m~YWL~~se-~~~~~~~~~~g~wGV-n~~arn----~lr~M--k~-GD~~~fY~~~~~hs~~~~~~ivGi~eV~~e~y~D 74 (147)
T 2p5d_A 4 MAYWLCITN-EDNWKVIKEKKIWGV-AERYKN----TINKV--KV-GDKLIIYEIQRSGKDYKPPYIRGVYEVVSEVYKD 74 (147)
T ss_dssp CCEEEEEEC-HHHHHHHHHHCEEEE-CGGGHH----HHTTC--CT-TCEEEEEECCBCSTTCBCCEEEEEEEECSCCEEC
T ss_pred ccceeeecC-HHHHHHHHHcCeeec-CHHHHH----HHHhC--CC-CCEEEEEEecccCCCCCCCEEEEEEEEecccccC
Confidence 479999987 777999999999966 443322 22221 12 3455666332 345899999999854222
Q ss_pred -----CCcccccccccccccceeEEEe--ecCCCCccc----ccccCCC-CCCceeecCCCceechHHHHHHHHH
Q 010141 334 -----KTVEYWQQDKWVGCFPLKWLII--KDVPNSSLR----HITLENN-ENKPVTNSRDTQEVNFEIGIQILKI 396 (517)
Q Consensus 334 -----k~~~~WqqdKw~G~F~VkWl~V--kDVPf~~lr----HI~N~~N-ENKPVt~SRDGQEIe~e~G~qLLkI 396 (517)
....|...+..--..+|+++.. ..||+..|+ +|.+.-. .+.-|..+ -++|..+.-..||+|
T Consensus 75 ~t~~dp~~~y~~~~~~w~~VdV~~v~~~~~~v~L~~Lk~~L~fi~~~~~~~~~L~r~g--v~pV~~~~~~~I~~~ 147 (147)
T 2p5d_A 75 SSKIFKPTPRNPNEKFPYRVKLKEIKVFEPPINFKELIPKLKFITNKKRWSGHLMGKA--MREIPEEDYKLIVGN 147 (147)
T ss_dssp CCCCSCCBTTBTTCCCCEEEEEEEEEEEEEEEEHHHHGGGCTTCCCSSSCCC--CCCS--EEEECHHHHHHHHTC
T ss_pred CcccCcCccCcCCCCCceEEEEEEEeecCCccCHHHHHhhhhhcccchhhHHHHhcCC--ceECCHHHHHHHHhC
Confidence 2222111221223788999987 888877766 2222211 22224555 899999988888753
No 5
>2eve_A Hypothetical protein pspto5229; alpha-beta protein, structural genomics, PSI, protein struct initiative; HET: MPO; 1.60A {Pseudomonas syringae PV} SCOP: b.122.1.8 PDB: 2g2x_A
Probab=46.21 E-value=87 Score=29.03 Aligned_cols=131 Identities=16% Similarity=0.308 Sum_probs=74.3
Q ss_pred eEEEEec----CChhhHHHHHhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEec-CCCCeeeeEEeeCCC-----
Q 010141 261 KFFIIKS----YSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVN-ASGQFVGVAEMVGPV----- 330 (517)
Q Consensus 261 RFFVIKS----~nEdNIhkSIKygVWaSTp~nnkKLd~AFreA~ek~~~~pVyLfFSVN-~SG~FqG~AeM~SpV----- 330 (517)
+|.++|| |+.||+.. -....|.-.++-.. .-|-.+.+ -++.| ||+.-| ......|+|++++..
T Consensus 2 ~YWL~KsEP~~~Siddl~~-~~~~~WdGVRNyqA---rN~mr~Mk--~GD~~-ffYHS~c~~pgIvGi~eVv~e~ypD~t 74 (157)
T 2eve_A 2 AYWLMKSEPDEFSISDLQR-LGKARWDGVRNYQA---RNFLRTMA--EGDEF-FFYHSSCPEPGIAGIGKIVKTAYPDPT 74 (157)
T ss_dssp CEEEEEECTTTSCHHHHHH-HSEEEECCCCCHHH---HHHHHHCC--TTCEE-EEEECSSSSCEEEEEEEEEEEEEECGG
T ss_pred ceeeEecCCCeeeHHHHhc-CCcEecCCcccHHH---HHHHHhcC--CCCEE-EEEecCCCCCEEEEEEEEeEccCCCcc
Confidence 4788886 67788887 55578975554322 11222221 23445 455555 889999999999743
Q ss_pred CCCCCcccccc------cccccccceeEEEe--ecCCCCcccccccCCCCCCceee-cC-CCceechHHHHHHHHHhhhC
Q 010141 331 DFDKTVEYWQQ------DKWVGCFPLKWLII--KDVPNSSLRHITLENNENKPVTN-SR-DTQEVNFEIGIQILKIFKSH 400 (517)
Q Consensus 331 Df~k~~~~Wqq------dKw~G~F~VkWl~V--kDVPf~~lrHI~N~~NENKPVt~-SR-DGQEIe~e~G~qLLkIF~~~ 400 (517)
.|+....||.. -+|. .+.|+-+.. +-|+...++... ++.+..-|.. +| --|-|..++-..||+|=.++
T Consensus 75 ~fdp~s~YyDpks~~~~prw~-~VdV~~v~~~~~pv~L~elK~~~-~L~~m~Lv~~g~RLSV~PVt~~ew~~I~~l~~~~ 152 (157)
T 2eve_A 75 ALDPDSHYHDAKATTEKNPWS-ALDIGFVDIFKNVLGLGYLKQQS-QLEQLPLVQKGSRLSVMPVTAEQWAAILALRLEH 152 (157)
T ss_dssp GGCTTSTTCCTTCCSSCCCCE-EEEEEEEEEEEEEEEHHHHHTCG-GGTTCGGGSTTCCCSEEEECHHHHHHHHHHHC--
T ss_pred cccccCcCcCcccCCCCCCEE-EEEEEEeeecCCccCHHHHhcCc-ccccCceeeccCCcCceecCHHHHHHHHHHhhhh
Confidence 35555666642 2443 455555433 445544444332 2333344444 23 35778888888888875443
No 6
>3eop_A Thymocyte nuclear protein 1; unknown function, nucleus, phosphoprotein; 2.30A {Homo sapiens} SCOP: b.122.1.0
Probab=34.51 E-value=84 Score=29.70 Aligned_cols=132 Identities=17% Similarity=0.250 Sum_probs=78.7
Q ss_pred eEEEEec-------------CChhhHHHH-HhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEecCCCCeeeeEEe
Q 010141 261 KFFIIKS-------------YSEDDVHKS-VKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEM 326 (517)
Q Consensus 261 RFFVIKS-------------~nEdNIhkS-IKygVWaSTp~nnkKLd~AFreA~ek~~~~pVyLfFSVN~SG~FqG~AeM 326 (517)
+|.++|| |+.||+... .+...|.=..+-..+- -.++. .-++.||++-|-...-...|+|++
T Consensus 2 ~yWLmKSEP~~r~e~g~dv~fSidDl~~~~~~~~~WdGVRNyqARN--~mR~M---k~GD~~fFYHSnck~pgIvGi~eV 76 (176)
T 3eop_A 2 SHWLMKSEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGVRNYQARN--FLRAM---KLGEEAFFYHSNCKEPGIAGLMKI 76 (176)
T ss_dssp CEEEEEEBSSCCBSSSSBCBCCSHHHHTSGGGEEECCCCCCHHHHH--HHHHC---CTTCEEEEEECCSSSCEEEEEEEE
T ss_pred ceeeeeeCCCcccccCccceEeHHHHHhccCCCCcccCcccHHHHH--HHHhc---CCCCEEEEEecCCCCCeEEEEEEE
Confidence 5788886 667787765 3456798665532221 11222 223555555555478899999999
Q ss_pred eCCC-----CCCCCcccccc------cccccccceeEEEe--ecCCCCcccccc-------cCCCCCCceeecC-CCcee
Q 010141 327 VGPV-----DFDKTVEYWQQ------DKWVGCFPLKWLII--KDVPNSSLRHIT-------LENNENKPVTNSR-DTQEV 385 (517)
Q Consensus 327 ~SpV-----Df~k~~~~Wqq------dKw~G~F~VkWl~V--kDVPf~~lrHI~-------N~~NENKPVt~SR-DGQEI 385 (517)
+... .|+....||.. .+|. .+.|+-+.. +-|+...++..- -++-+..-|+.+| --|-|
T Consensus 77 v~e~ypD~T~fDp~s~YyDpkS~~~~prW~-~VdV~~v~~~~~~vtL~eLK~~~~~~~~~~~~L~~m~Lvr~~RLSV~PV 155 (176)
T 3eop_A 77 VKEAYPDHTQFEKNNPHYDPSSKEDNPKWS-MVDVQFVRMMKRFIPLAELKSYHQAHKATGGPLKNMVLFTRQRLSIQPL 155 (176)
T ss_dssp EEEEEECGGGTCTTSTTCCTTCCTTSCSCE-EEEEEEEEEEEEEEEHHHHHHHHHHHHHHTCTTSSCHHHHCTTCSEEEE
T ss_pred eeccccCCcccCCCCCCCCccCcCCCCCEE-EEEEEEeeecCCcccHHHHhcCcccccccccccccCceeccCccCceec
Confidence 9743 35556666642 2564 566666654 346666666553 1344444455555 45677
Q ss_pred chHHHHHHHHHhh
Q 010141 386 NFEIGIQILKIFK 398 (517)
Q Consensus 386 e~e~G~qLLkIF~ 398 (517)
..+.-..||+|-+
T Consensus 156 t~~ew~~I~~l~~ 168 (176)
T 3eop_A 156 TQEEFDFVLSLEE 168 (176)
T ss_dssp CHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHh
Confidence 7777777777644
No 7
>2ar1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP, unknown F; 1.60A {Leishmania major} SCOP: b.122.1.8
Probab=31.54 E-value=1.9e+02 Score=27.14 Aligned_cols=131 Identities=25% Similarity=0.334 Sum_probs=69.5
Q ss_pred CceEEEEec----CChhhHHHHHhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEecCCCCeeeeEEeeCCC----
Q 010141 259 DAKFFIIKS----YSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPV---- 330 (517)
Q Consensus 259 ~ARFFVIKS----~nEdNIhkSIKygVWaSTp~nnkKLd~AFreA~ek~~~~pVyLfFSVN~SG~FqG~AeM~SpV---- 330 (517)
...|.++|| |+.||+.. -....|.-..+-..+ -|-.+. .-++.||++-|-.....+.|+|++++..
T Consensus 18 ~M~YWL~KSEP~~~Siddl~~-~~~~~WdGVRNyqAR---N~mr~M--k~GD~vfFYHS~c~~pgIvGi~eVv~e~ypD~ 91 (172)
T 2ar1_A 18 DIHYWLLKSEPHKFSIDDLAK-QKTSPWDGVRNYAAR---NNMRAM--SVGDKVLFYHSNTKEPGVAGLAEVVRLAYDDF 91 (172)
T ss_dssp SCCEEEEEECTTTSCHHHHHH-HSEEECCCCCCHHHH---HHHHHC--CTTCEEEEEECSSSSCEEEEEEEEEEEEEECG
T ss_pred ccceEEEEcCCCccCHHHHHh-cCceeccCcCcHHHH---HHHHhc--CCCCEEEEEecCCCCCEEEEEEEEeeeccCCc
Confidence 347999997 67788877 444679866543221 122222 2234555555544889999999999743
Q ss_pred -CCCCCcccccc------cccccccceeEEEe--ecCCCCcccccccCCCCCCceeecC-CCceechHHHHHHHHHh
Q 010141 331 -DFDKTVEYWQQ------DKWVGCFPLKWLII--KDVPNSSLRHITLENNENKPVTNSR-DTQEVNFEIGIQILKIF 397 (517)
Q Consensus 331 -Df~k~~~~Wqq------dKw~G~F~VkWl~V--kDVPf~~lrHI~N~~NENKPVt~SR-DGQEIe~e~G~qLLkIF 397 (517)
.|+....||.. -+|. .+.|+-+.. .-|+...|+... ++.+..-|..+| --|-|..++-..||+|-
T Consensus 92 t~fdp~s~YyDpks~~~~prw~-~VdV~~v~~~~~pvtL~eLK~~~-~L~~m~Lvr~~RLSV~PVt~~ew~~I~~l~ 166 (172)
T 2ar1_A 92 TALDKTSEYFDPKATKEKNPWK-MVDVKFVARWDTVLTLHELKSRR-ELQKMALFTQRRLSVQPVSASEYAYILRMN 166 (172)
T ss_dssp GGGCTTSTTCCTTCCSSCCCCE-EEEEEEEEEEEEEEEHHHHTTCG-GGTTCHHHHCSSCSEEEECHHHHHHHHHHH
T ss_pred ccccccCcccCcccCCCCCCeE-EEEEEEeeecCCcccHHHHhcCc-ccccCeeeeccCCCceecCHHHHHHHHHhh
Confidence 35555566652 1343 445554432 344444444321 122222223333 23455556666666554
No 8
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=15.08 E-value=29 Score=29.08 Aligned_cols=15 Identities=33% Similarity=0.601 Sum_probs=12.4
Q ss_pred ceeecCCCceechHH
Q 010141 375 PVTNSRDTQEVNFEI 389 (517)
Q Consensus 375 PVt~SRDGQEIe~e~ 389 (517)
.|++.||||||+.++
T Consensus 9 tikiqrdgqeieidi 23 (96)
T 2jvf_A 9 TIKIQRDGQEIEIDI 23 (96)
T ss_dssp EEEEEETTEEEEEEE
T ss_pred EEEEeeCCeEEEEEE
Confidence 578899999998754
No 9
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=10.98 E-value=2.5e+02 Score=23.60 Aligned_cols=45 Identities=20% Similarity=0.196 Sum_probs=32.1
Q ss_pred EEEecCChhhHHHHHhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEE
Q 010141 263 FIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFS 313 (517)
Q Consensus 263 FVIKS~nEdNIhkSIKygVWaSTp~nnkKLd~AFreA~ek~~~~pVyLfFS 313 (517)
.+++|.--+|+..+|+ ......+|-+||++++..+....|.|.|-
T Consensus 12 ~~~~~~~~~dl~f~I~------~~t~v~kLi~ayc~~~~I~~~~~IrllFD 56 (82)
T 3goe_A 12 LLLRSSKSEDLRLSIP------VDFTVKDLIKRYCTEVKISFHERIRLEFE 56 (82)
T ss_dssp EEEEESSSCCEEEEEE------TTSBHHHHHHHHHHHHTCCCCTTCEEEET
T ss_pred HhhhccCCCCeEEEec------CCCCHHHHHHHHHHHcCCCcCceEEEEEc
Confidence 4566666666654433 34456899999999988777778999884
No 10
>2gbs_A Hypothetical protein RPA0253; alpha-beta, RPR3, NESG, structural genomics, COG294 protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: b.122.1.8
Probab=9.59 E-value=5.2e+02 Score=23.50 Aligned_cols=64 Identities=20% Similarity=0.317 Sum_probs=38.6
Q ss_pred eEEEEec----CChhhHHHHHh-cCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEecCCCCeeeeEEeeCCC
Q 010141 261 KFFIIKS----YSEDDVHKSVK-YNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPV 330 (517)
Q Consensus 261 RFFVIKS----~nEdNIhkSIK-ygVWaSTp~nnkKLd~AFreA~ek~~~~pVyLfFSVN~SG~FqG~AeM~SpV 330 (517)
+|.++|| |+.||+...-. .-.|.--.+-..+ .-.++. .-++ -.||+.-|....+.|+|++++..
T Consensus 2 ~YWL~KsEP~~~Siddl~~~~~~~~~WdGVRNyqAr--n~mr~M---k~GD-~~ffYHS~~~~gIvGi~eVv~e~ 70 (145)
T 2gbs_A 2 AYWLVKSEPSVWSWDQQVAKGAAGEAWTGVRNHSAK--LHMVAM---RRGD-RAFYYHSNEGKEIVGIAEIIREA 70 (145)
T ss_dssp CEEEEEECTTTSCHHHHHTTTTTCEECCCCCCHHHH--HHHHHC---CTTC-EEEEEETTTTCEEEEEEEEEEEE
T ss_pred ceEEEEcCCCcCCHHHHHhcCcccceeCCcccHHHH--HHHHhc---CCCC-EEEEEEeCCCCceEEEEEEEEec
Confidence 5888887 56677776332 2459855443211 112222 1234 44555556889999999999865
Done!