BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010142
(517 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 162 bits (411), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 112/319 (35%), Positives = 166/319 (52%), Gaps = 14/319 (4%)
Query: 66 IGVNWGSVSSHKLKPSTVVDLLKDNKIQKVKLFDADPDALVALMRSGIQVMVGIPNEMXX 125
IGV +G + ++ PS VV L K N I +++L+D + AL AL S IQV++ +P
Sbjct: 1 IGVCYGMLGNNLPPPSEVVSLYKSNNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDVQ 60
Query: 126 XXXXXXXXXDLWVRQNVSRYLVKGGADIRYIAVGNEPFLTSYAGQFQSYVVPALLNLQQS 185
W+R+NV Y RYIAVGNE S Q Y++PA+ N+ +
Sbjct: 61 SLASNPSAAGDWIRRNVVAYWPS--VSFRYIAVGNELIPGSDLAQ---YILPAMRNIYNA 115
Query: 186 LAKANLAGYVKLVVPCNADAYESSL-PSQGAFRPELTQIMTQLVSFLNSNGSPFIVNIYP 244
L+ A L +K+ + +S PS GAF ++ +V FL SNG+P +VN+YP
Sbjct: 116 LSSAGLQNQIKVSTAVDTGVLGTSYPPSAGAFSSAAQAYLSPIVQFLASNGAPLLVNVYP 175
Query: 245 FLSLYGN-SDFPEDYAFFEGTSHPVTDGPNVYSNAFDGNFDTLVAALSKLGYGQMPIVIG 303
+ S GN YA F + V DG Y N FD D + AAL ++G + +V+
Sbjct: 176 YFSYTGNPGQISLPYALFTASGVVVQDGRFSYQNLFDAIVDAVFAALERVGGANVAVVVS 235
Query: 304 EVGWPT-DGTISANLTAARTFNQGLINHVLSNKGTPLRPGAPSMDIYLFSLLDEGAKSIL 362
E GWP+ G A+ + A+T+NQ LI HV GTP RPG ++ Y+F + +E K+
Sbjct: 236 ESGWPSAGGGAEASTSNAQTYNQNLIRHV--GGGTPRRPGK-EIEAYIFEMFNENQKA-- 290
Query: 363 PGNFERHWGIFSFDGQAKY 381
G E+++G+F + Q Y
Sbjct: 291 -GGIEQNFGLFYPNKQPVY 308
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 161 bits (408), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 108/319 (33%), Positives = 159/319 (49%), Gaps = 18/319 (5%)
Query: 66 IGVNWGSVSSHKLKPSTVVDLLKDNKIQKVKLFDADPDALVALMRSGIQVMVGIPNEMXX 125
IGV +G +++ STVV + K N I+ ++L+ + AL A+ +GI V+VG PN++
Sbjct: 1 IGVCYGMSANNLPAASTVVSMFKSNGIKSMRLYAPNQAALQAVGGTGINVVVGAPNDVLS 60
Query: 126 XXXXXXXXXDLWVRQNVSRYLVKGGADIRYIAVGNEPFLTSYAGQFQSYVVPALLNLQQS 185
WV+ N+ Y RY+ VGNE AG +VPA+ N+ +
Sbjct: 61 NLAASPAAAASWVKSNIQAYP---KVSFRYVCVGNE-----VAGGATRNLVPAMKNVHGA 112
Query: 186 LAKANLAGYVKLVVPCNADAYES-SLPSQGAFRPELTQIMTQLVSFLNSNGSPFIVNIYP 244
L A L G++K+ + S PS G+F E M +V FL +P + NIYP
Sbjct: 113 LVAAGL-GHIKVTTSVSQAILGVFSPPSAGSFTGEAAAFMGPVVQFLARTNAPLMANIYP 171
Query: 245 FLS-LYGNSDFPEDYAFFEGTSHPVTDGPNVYSNAFDGNFDTLVAALSKLGYGQMPIVIG 303
+L+ Y S YA F + V DG Y N FD D A+ K G + +V+
Sbjct: 172 YLAWAYNPSAMDMGYALFNASGTVVRDGAYGYQNLFDTTVDAFYTAMGKHGGSSVKLVVS 231
Query: 304 EVGWPTDGTISANLTAARTFNQGLINHVLSNKGTPLRPGAPSMDIYLFSLLDEGAKSILP 363
E GWP+ G +A AR +NQ LINHV +GTP PGA ++ Y+F++ +E K
Sbjct: 232 ESGWPSGGGTAATPANARFYNQHLINHV--GRGTPRHPGA--IETYIFAMFNENQKD--- 284
Query: 364 GNFERHWGIFSFDGQAKYP 382
E++WG+F + Q YP
Sbjct: 285 SGVEQNWGLFYPNMQHVYP 303
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 155 bits (391), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 105/322 (32%), Positives = 163/322 (50%), Gaps = 18/322 (5%)
Query: 66 IGVNWGSVSSHKLKPSTVVDLLKDNKIQKVKLFDADPDALVALMRSGIQVMVGIPNEMXX 125
+GV +G ++ S V+ L K + I +++++D + L AL S I++++G+PN
Sbjct: 2 VGVCYGMQGNNLPPVSEVIALYKKSNITRMRIYDPNQAVLEALRGSNIELILGVPNSDLQ 61
Query: 126 XXXXXXXXXDLWVRQNVSRYLVKGGADIRYIAVGNE--PFL--TSYAGQFQSYVVPALLN 181
WV++NV + RYIAVGNE P T++ QF V+PA+ N
Sbjct: 62 SLTNPSNAKS-WVQKNVRGFW--SSVRFRYIAVGNEISPVNRGTAWLAQF---VLPAMRN 115
Query: 182 LQQSLAKANLAGYVKLVVPCNADAYESSLP-SQGAFRPELTQIMTQLVSFLNSNGSPFIV 240
+ ++ A L +K+ + +S P S GAFR ++ + ++ FL+S SP +
Sbjct: 116 IHDAIRSAGLQDQIKVSTAIDLTLVGNSYPPSAGAFRDDVRSYLNPIIRFLSSIRSPLLA 175
Query: 241 NIYPFLSLYGN-SDFPEDYAFFEGTSHPVTDGPNVYSNAFDGNFDTLVAALSKLGYGQMP 299
NIYP+ + GN D YA F S V DG Y N FD D L +AL + G +
Sbjct: 176 NIYPYFTYAGNPRDISLPYALFTSPSVVVWDGQRGYKNLFDATLDALYSALERASGGSLE 235
Query: 300 IVIGEVGWPTDGTISANLTAARTFNQGLINHVLSNKGTPLRPGAPSMDIYLFSLLDEGAK 359
+V+ E GWP+ G +A RT+ LI HV +GTP RP +++ YLF++ DE K
Sbjct: 236 VVVSESGWPSAGAFAATFDNGRTYLSNLIQHV--KRGTPKRPKR-AIETYLFAMFDENKK 292
Query: 360 SILPGNFERHWGIFSFDGQAKY 381
E+H+G+F + KY
Sbjct: 293 Q---PEVEKHFGLFFPNKWQKY 311
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/318 (29%), Positives = 160/318 (50%), Gaps = 12/318 (3%)
Query: 66 IGVNWGSVSSHKLKPSTVVDLLKDNKIQKVKLFDADPDALVALMRSGIQVMVGIPNEMXX 125
IGV +G ++++ V+ L N I+K++++ + AL S I++++ +PN+
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQ-DL 61
Query: 126 XXXXXXXXXDLWVRQNVSRYLVKGGADIRYIAVGNEPFLTSYAGQFQSYVVPALLNLQQS 185
+ WV+ N+ + +YIAVGNE +G++ +V PA+ N+ +
Sbjct: 62 EALANPSNANGWVQDNIRNHFPD--VKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNA 119
Query: 186 LAKANLAGYVKLVVPCNADAYESSLPSQGA-FRPELTQIMTQLVSFLNSNGSPFIVNIYP 244
L+ A L +K+ + ++ P + + FR E + ++ FL + P + NIYP
Sbjct: 120 LSSAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYP 179
Query: 245 FLSLYGNSD-FPEDYAFFEGTSHPVTDGPNVYSNAFDGNFDTLVAALSKLGYGQMPIVIG 303
+ N++ P YA F T Y N FD D++ A KLG + I++
Sbjct: 180 YFGHIDNTNAVPLSYALFNQQRRNDTG----YQNLFDALVDSMYFATEKLGGQNIEIIVS 235
Query: 304 EVGWPTDGTISANLTAARTFNQGLINHVLSNKGTPLRPGAPSMDIYLFSLLDEGAKSILP 363
E GWP++G +A L ART+ LINHV GTP +PG +++ YLF++ DE K
Sbjct: 236 ESGWPSEGHPAATLKNARTYYTNLINHVKRGAGTPKKPGK-TIETYLFAMFDENEKKGEA 294
Query: 364 GNFERHWGIFSFDGQAKY 381
E+H+G+F+ D + KY
Sbjct: 295 S--EKHFGLFNPDQRPKY 310
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/318 (29%), Positives = 159/318 (50%), Gaps = 12/318 (3%)
Query: 66 IGVNWGSVSSHKLKPSTVVDLLKDNKIQKVKLFDADPDALVALMRSGIQVMVGIPNEMXX 125
IGV +G ++++ V+ L N I+K++++ + AL S I++++ +PN+
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQ-DL 61
Query: 126 XXXXXXXXXDLWVRQNVSRYLVKGGADIRYIAVGNEPFLTSYAGQFQSYVVPALLNLQQS 185
+ WV+ N+ + +YIAVGNE +G++ +V PA+ N+ +
Sbjct: 62 EALANPSNANGWVQDNIRNHFPD--VKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNA 119
Query: 186 LAKANLAGYVKLVVPCNADAYESSLPSQGA-FRPELTQIMTQLVSFLNSNGSPFIVNIYP 244
L+ A L +K+ + ++ P + + FR E + ++ FL + P + NIYP
Sbjct: 120 LSSAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYP 179
Query: 245 FLSLYGNSD-FPEDYAFFEGTSHPVTDGPNVYSNAFDGNFDTLVAALSKLGYGQMPIVIG 303
+ N++ P YA F T Y N FD D++ A KLG + I++
Sbjct: 180 YFGHIDNTNAVPLSYALFNQQRRNDTG----YQNLFDALVDSMYFATEKLGGQNIEIIVS 235
Query: 304 EVGWPTDGTISANLTAARTFNQGLINHVLSNKGTPLRPGAPSMDIYLFSLLDEGAKSILP 363
GWP++G +A L ART+ LINHV GTP +PG +++ YLF++ DE K
Sbjct: 236 ASGWPSEGHPAATLKNARTYYTNLINHVKRGAGTPKKPGK-TIETYLFAMFDENEKKGEA 294
Query: 364 GNFERHWGIFSFDGQAKY 381
E+H+G+F+ D + KY
Sbjct: 295 S--EKHFGLFNPDQRPKY 310
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 105/319 (32%), Positives = 161/319 (50%), Gaps = 20/319 (6%)
Query: 66 IGVNWGSVSSHKLKPSTVVDLLKDNKIQKVKLFDADPDALVALMRSGIQVMVGIPNEMXX 125
IGV +G + ++ S VV L + I ++++ AD AL AL SGI +++ I N+
Sbjct: 1 IGVCYGVIGNNLPSRSDVVQLYRSKGINGMRIYFADGQALSALRNSGIGLILDIGNDQLA 60
Query: 126 XXXXXXXXXDLWVRQNVSRYLVKGGADIRYIAVGNEPFLTSYAGQFQSYVVPALLNLQQS 185
WV+ NV Y +I+YIA GNE G QS ++PA+ NL +
Sbjct: 61 NIAASTSNAASWVQNNVRPYYP--AVNIKYIAAGNE----VQGGATQS-ILPAMRNLNAA 113
Query: 186 LAKANLAGYVKLVVPCNADAYESSLP-SQGAFRPELTQIMTQLVSFLNSNGSPFIVNIYP 244
L+ A L +K+ D +S P S G F+ MT + L S G+P + N+YP
Sbjct: 114 LSAAGLG-AIKVSTSIRFDEVANSFPPSAGVFK---NAYMTDVARLLASTGAPLLANVYP 169
Query: 245 FLSLYGN-SDFPEDYAFFE-GTSHPVTDGPNVYSNAFDGNFDTLVAALSKLGYGQMPIVI 302
+ + N +YA F+ GT+ + Y++ FD D + AAL K G + +V+
Sbjct: 170 YFAYRDNPGSISLNYATFQPGTTVRDQNNGLTYTSLFDAMVDAVYAALEKAGAPAVKVVV 229
Query: 303 GEVGWPTDGTISANLTAARTFNQGLINHVLSNKGTPLRPGAPSMDIYLFSLLDEGAKSIL 362
E GWP+ G +A+ ART+NQGLINHV GTP + A ++ Y+F++ +E K+
Sbjct: 230 SESGWPSAGGFAASAGNARTYNQGLINHV--GGGTPKKREA--LETYIFAMFNENQKT-- 283
Query: 363 PGNFERHWGIFSFDGQAKY 381
ER +G+F+ D Y
Sbjct: 284 GDATERSFGLFNPDKSPAY 302
>pdb|2JON|A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9
Length = 101
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 405 WCVANPSQDLSDVANHIKLACSVA-DCTTLNYGGSC---NGIGAKGNISYAFNSYYQLQM 460
WCV P + +I ACS DC + GG+C N + K + +Y N YYQ
Sbjct: 13 WCVPKPGVSDDQLTGNINYACSQGIDCGPIQPGGACFEPNTV--KAHAAYVMNLYYQHAG 70
Query: 461 QNEKSCNFDGLGMVTFLDPSVGECRFPVG 489
+N +C+F +T +PS G C FP G
Sbjct: 71 RNSWNCDFSQTATLTNTNPSYGACNFPSG 99
>pdb|1HPL|A Chain A, Horse Pancreatic Lipase. The Crystal Structure At 2.3
Angstroms Resolution
pdb|1HPL|B Chain B, Horse Pancreatic Lipase. The Crystal Structure At 2.3
Angstroms Resolution
Length = 449
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 240 VNIYPFLSLYGNSDFPEDYAFFEGTSHPVTDGPNVYSNAFDGNFDTLVAALSKLGY 295
V + +SL+GN Y F+GT P N YSN FD D V L K+ +
Sbjct: 352 VTGHVLVSLFGNKGNSRQYEIFQGTLKP----DNTYSNEFDS--DVEVGDLEKVKF 401
>pdb|3V10|A Chain A, Crystal Structure Of The Collagen Binding Domain Of
Erysipelothrix Rhusiopathiae Surface Protein Rspb
pdb|3V10|B Chain B, Crystal Structure Of The Collagen Binding Domain Of
Erysipelothrix Rhusiopathiae Surface Protein Rspb
Length = 321
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 13/119 (10%)
Query: 194 YVKLVVPCNADAYESSLPSQGAFRPELTQIMTQLVSFLNSNGSPFIVNIYPFLSLYGNSD 253
+ L +P N + SL + G+ P L + + NG + F + + +
Sbjct: 50 FFDLTLPSNDEVSLRSLRAMGSKMPVLAK---------DKNGKEITLGELTFNGSHIHFE 100
Query: 254 FPEDYAFFEGTSHPVTDGPNVYSNAFDGNFDTLVAALSKLGYGQMP---IVIGEVGWPT 309
F ED E + + + +VY NA+ G D + + LG G + I I + G PT
Sbjct: 101 FMEDVLQLENVTGTI-NLKSVYDNAYRGEDDKIAELPTNLGLGSLDKQMITISQPGTPT 158
>pdb|2ARZ|A Chain A, Crystal Structure Of Protein Of Unknown Function From
Pseudomonas Aeruginosa
pdb|2ARZ|B Chain B, Crystal Structure Of Protein Of Unknown Function From
Pseudomonas Aeruginosa
Length = 247
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 135 DLWVRQNVSRYLVKGGADIRYIAVGNEPFLTSYAGQFQSYVVPALLNLQQSLAKANLAGY 194
D WV Q V + G I ++A P +AG+ + +V + S A +A Y
Sbjct: 126 DFWVLQPVQWRFIGGFGAIHWLAAERVPLANPFAGEAERGMVEHM----NSDHAAAIAHY 181
Query: 195 VKLV-VPCNADAYESSLPSQG 214
V+L +P +A A + + ++G
Sbjct: 182 VELAGLPAHAAAQLAGIDTEG 202
>pdb|3MK9|A Chain A, Stabilized Ricin Immunogen 1-3344-198
Length = 189
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 250 GNSDF---PEDYAFFEGTSHPVTDGPNVYSNAFDGNFDTL 286
GNS + P++ E +H TD N Y+ AF GN+D L
Sbjct: 78 GNSAYFFHPDNQCDAEAITHLFTDVQNRYTFAFGGNYDRL 117
>pdb|3PX8|X Chain X, Rta In Complex With 7-Carboxy-Pterin
pdb|3PX9|X Chain X, Rta In Complex With N-(Furanylmethyl)-7-Carbamoyl-Pterin
Length = 258
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 239 IVNIYPFLSLYGNSDF---PEDYAFFEGTSHPVTDGPNVYSNAFDGNFDTL 286
+ N Y GNS + P++ E +H TD N Y+ AF GN+D L
Sbjct: 73 VTNAYVVGYRAGNSAYFFHPDNQEDAEAITHLFTDVQNRYTFAFGGNYDRL 123
>pdb|1EG7|A Chain A, The Crystal Structure Of Formyltetrahydrofolate Synthetase
From Moorella Thermoacetica
pdb|1EG7|B Chain B, The Crystal Structure Of Formyltetrahydrofolate Synthetase
From Moorella Thermoacetica
Length = 557
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 19/93 (20%)
Query: 270 DGPNVYSNAFDGNFDTLVAALSKLGYGQMPIVIG-----------EVGWPTDGTIS---A 315
DG N + A D + LGYG +P+V+ ++G P + TI+
Sbjct: 460 DGVNYTAEA-----DKAIQRYESLGYGNLPVVMAKTQYSFSDDMTKLGRPRNFTITVREV 514
Query: 316 NLTAARTFNQGLINHVLSNKGTPLRPGAPSMDI 348
L+A + +++ G P RP A ++DI
Sbjct: 515 RLSAGGRLIVPITGAIMTMPGLPKRPAACNIDI 547
>pdb|3EJ5|X Chain X, Complex Of Ricin A Chain And Pyrimidine-Based Inhibitor
Length = 257
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 250 GNSDF---PEDYAFFEGTSHPVTDGPNVYSNAFDGNFDTL 286
GNS + P++ E +H TD N Y+ AF GN+D L
Sbjct: 83 GNSAYFFHPDNQEDAEAITHLFTDVQNRYTFAFGGNYDRL 122
>pdb|4IMV|A Chain A, Ricin A-chain Variant 1-33/44-198 With Engineered
Disulfide Bond, R48c/t77c/d75n
Length = 189
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 250 GNSDF---PEDYAFFEGTSHPVTDGPNVYSNAFDGNFDTL 286
GNS + P++ E +H TD N Y+ AF GN+D L
Sbjct: 78 GNSAYFFHPDNQEDAEAITHLFTDVQNRYTFAFGGNYDRL 117
>pdb|1FPM|A Chain A, Monovalent Cation Binding Sites In
N10-formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FPM|B Chain B, Monovalent Cation Binding Sites In
N10-formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FP7|A Chain A, Monovalent Cation Binding Sites In
N10-Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FP7|B Chain B, Monovalent Cation Binding Sites In
N10-Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|3PZX|A Chain A, Native Crystal Structure Of N10-Formyltetrahydrofolate
Synthetase
pdb|3PZX|B Chain B, Native Crystal Structure Of N10-Formyltetrahydrofolate
Synthetase
pdb|3QB6|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Folate
pdb|3QB6|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Folate
pdb|3RBO|A Chain A, Crystal Structure Of N10-Formyltetrahydrofolate Synthetase
With Adp And Formylphosphate
pdb|3RBO|B Chain B, Crystal Structure Of N10-Formyltetrahydrofolate Synthetase
With Adp And Formylphosphate
pdb|3SIN|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Zd9331 And Formylphosphate
pdb|3SIN|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Zd9331 And Formylphosphate
pdb|3QUS|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Atpgs
pdb|3QUS|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Atpgs
Length = 557
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 19/93 (20%)
Query: 270 DGPNVYSNAFDGNFDTLVAALSKLGYGQMPIVIG-----------EVGWPTDGTIS---A 315
DG N + A D + LGYG +P+V+ ++G P + TI+
Sbjct: 460 DGVNYTAEA-----DKAIQRYESLGYGNLPVVMAKTQYSFSDDMTKLGRPRNFTITVREV 514
Query: 316 NLTAARTFNQGLINHVLSNKGTPLRPGAPSMDI 348
L+A + +++ G P RP A ++DI
Sbjct: 515 RLSAGGRLIVPITGAIMTMPGLPKRPAACNIDI 547
>pdb|3LC9|A Chain A, Ricin A-Chain Variant 1-3344-198 With Engineered Disulfide
Bond
Length = 189
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 250 GNSDF---PEDYAFFEGTSHPVTDGPNVYSNAFDGNFDTL 286
GNS + P++ E +H TD N Y+ AF GN+D L
Sbjct: 78 GNSAYFFHPDNQEDAEAITHLFTDVQNRYTFAFGGNYDRL 117
>pdb|1IFS|A Chain A, Ricin A-Chain (Recombinant) Complex With Adenosine
(Adenosine Becomes Adenine In The Complex)
pdb|1IFT|A Chain A, Ricin A-Chain (Recombinant)
pdb|1IFU|A Chain A, Ricin A-Chain (Recombinant) Complex With Formycin
Length = 263
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 250 GNSDF---PEDYAFFEGTSHPVTDGPNVYSNAFDGNFDTL 286
GNS + P++ E +H TD N Y+ AF GN+D L
Sbjct: 87 GNSAYFFHPDNQEDAEAITHLFTDVQNRYTFAFGGNYDRL 126
>pdb|3SRP|A Chain A, Structure Of Rivax: A Human Ricin Vaccine
Length = 268
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 250 GNSDF---PEDYAFFEGTSHPVTDGPNVYSNAFDGNFDTL 286
GNS + P++ E +H TD N Y+ AF GN+D L
Sbjct: 88 GNSAYFFHPDNQEDAEAITHLFTDVQNRYTFAFGGNYDRL 127
>pdb|3BJG|A Chain A, Structure Of Rivax: A Human Ricin Vaccine
Length = 268
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 250 GNSDF---PEDYAFFEGTSHPVTDGPNVYSNAFDGNFDTL 286
GNS + P++ E +H TD N Y+ AF GN+D L
Sbjct: 88 GNSAYFFHPDNQEDAEAITHLFTDVQNRYTFAFGGNYDRL 127
>pdb|1BR6|A Chain A, Ricin A Chain (Recombinant) Complex With Pteroic Acid
pdb|1RTC|A Chain A, The Structure Of Recombinant Ricin A Chain At 2.3
Angstroms
pdb|2P8N|A Chain A, Ricin A-Chain (Recombinant) Complex With Adenine
pdb|2PJO|A Chain A, Ricin A-Chain (Recombinant) Complex With N-Methylurea
pdb|2R2X|A Chain A, Ricin A-Chain (Recombinant) Complex With Urea
pdb|2R3D|A Chain A, Ricin A-Chain (Recombinant) Complex With Acetamide
pdb|3HIO|A Chain A, Crystal Structure Of Ricin A-Chain In Complex With The
Cyclic Tetranucleotide Inhibitor, A Transition State
Analogue
pdb|4HV3|A Chain A, Structure Of Ricin A Chain Bound With
N-(N-(Pterin-7-Yl)carbonyl-L- Serinyl)-L-Tryptophan
Length = 268
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 250 GNSDF---PEDYAFFEGTSHPVTDGPNVYSNAFDGNFDTL 286
GNS + P++ E +H TD N Y+ AF GN+D L
Sbjct: 88 GNSAYFFHPDNQEDAEAITHLFTDVQNRYTFAFGGNYDRL 127
>pdb|2AAI|A Chain A, Crystallographic Refinement Of Ricin To 2.5 Angstroms
pdb|1BR5|A Chain A, Ricin A Chain (Recombinant) Complex With Neopterin
pdb|1IL3|A Chain A, Structure Of Ricin A Chain Bound With Inhibitor 7-
Deazaguanine
pdb|1IL4|A Chain A, Structure Of Ricin A Chain Bound With Inhibitor 9-
Deazaguanine
pdb|1IL5|A Chain A, Structure Of Ricin A Chain Bound With Inhibitor
2,5-diamino- 4,6-dihydroxypyrimidine (ddp)
pdb|1IL5|B Chain B, Structure Of Ricin A Chain Bound With Inhibitor
2,5-diamino- 4,6-dihydroxypyrimidine (ddp)
pdb|1IL9|A Chain A, Structure Of Ricin A Chain Bound With Inhibitor
8-Methyl-9- Oxoguanine
pdb|3RTI|A Chain A, Crystal Structure Of Ricin Bound With Formycin
Monophosphate
pdb|3RTJ|A Chain A, Crystal Structure Of Ricin Bound With Dinucleotide Apg
pdb|4ESI|A Chain A, Structure Of Ricin A Chain Bound With
N-((1h-1,2,3-Triazol-4-Yl)
Methyl-2-Amino-4-Oxo-3,4-Dihydropteridine-7-Carboxamide
pdb|4HUO|X Chain X, Stucture Of Ricin A Chain Bound With N-(N-(Pterin-7-Yl)
Carbonylglycyl)-L-Phenylalanine
pdb|4HUP|X Chain X, Structure Of Ricin A Chain Bound With N-(N-(Pterin-7-Yl)
Carbonylglycyl)-L-Phenylalanyl)-L-Phenylalanine
pdb|4HV7|X Chain X, Sructure Of Ricin A Chain Bound With N-(N-(Pterin-7-Yl)
Carbonylglycyl)glycine
Length = 267
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 250 GNSDF---PEDYAFFEGTSHPVTDGPNVYSNAFDGNFDTL 286
GNS + P++ E +H TD N Y+ AF GN+D L
Sbjct: 87 GNSAYFFHPDNQEDAEAITHLFTDVQNRYTFAFGGNYDRL 126
>pdb|1J1M|A Chain A, Ricin A-Chain (Recombinant) At 100k
Length = 268
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 250 GNSDF---PEDYAFFEGTSHPVTDGPNVYSNAFDGNFDTL 286
GNS + P++ E +H TD N Y+ AF GN+D L
Sbjct: 88 GNSAYFFHPDNQEDAEAITHLFTDVQNRYTFAFGGNYDRL 127
>pdb|1UQ4|A Chain A, Ricin A-chain (recombinant) R213d Mutant
Length = 263
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 250 GNSDF---PEDYAFFEGTSHPVTDGPNVYSNAFDGNFDTL 286
GNS + P++ E +H TD N Y+ AF GN+D L
Sbjct: 83 GNSAYFFHPDNQEDAEAITHLFTDVQNRYTFAFGGNYDRL 122
>pdb|1OBS|A Chain A, Structure Of Ricin A Chain Mutant
pdb|1OBT|A Chain A, Structure Of Ricin A Chain Mutant, Complex With Amp
Length = 267
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 250 GNSDF---PEDYAFFEGTSHPVTDGPNVYSNAFDGNFDTL 286
GNS + P++ E +H TD N Y+ AF GN+D L
Sbjct: 87 GNSAYFFHPDNQEDAEAITHLFTDVQNRYTFAFGGNYDRL 126
>pdb|2VC3|A Chain A, Ricin A-Chain (Recombinant) E177d Mutant With A Bound
Acetate
pdb|2VC4|A Chain A, Ricin A-Chain (Recombinant) E177d Mutant
Length = 267
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 250 GNSDF---PEDYAFFEGTSHPVTDGPNVYSNAFDGNFDTL 286
GNS + P++ E +H TD N Y+ AF GN+D L
Sbjct: 87 GNSAYFFHPDNQEDAEAITHLFTDVQNRYTFAFGGNYDRL 126
>pdb|3EH2|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24c
pdb|3EH2|B Chain B, Crystal Structure Of The Human Copii-Coat Protein Sec24c
pdb|3EH2|C Chain C, Crystal Structure Of The Human Copii-Coat Protein Sec24c
Length = 766
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 9/84 (10%)
Query: 159 GNEPFLTSYAGQFQSYVVPALLNLQQSLAKANLAGYVKLVVPCNAD-AYESSLPSQGAFR 217
G EPF+T GQ V L Q A +PC +D A ++ +P +
Sbjct: 13 GTEPFVTGVRGQVPPLVTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIK 72
Query: 218 PELTQIMTQLVSFLNSNGSPFIVN 241
P L SP++V+
Sbjct: 73 P--------LARLPPEEASPYVVD 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,537,873
Number of Sequences: 62578
Number of extensions: 606467
Number of successful extensions: 1079
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1055
Number of HSP's gapped (non-prelim): 33
length of query: 517
length of database: 14,973,337
effective HSP length: 103
effective length of query: 414
effective length of database: 8,527,803
effective search space: 3530510442
effective search space used: 3530510442
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)