Query 010142
Match_columns 517
No_of_seqs 258 out of 1650
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 21:32:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010142.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010142hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 1.9E-83 4.2E-88 657.5 22.3 308 66-385 1-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 2.8E-38 6.1E-43 309.1 23.5 250 63-377 43-305 (305)
3 smart00768 X8 Possibly involve 99.9 9.2E-28 2E-32 202.0 7.5 83 404-486 1-85 (85)
4 PF03198 Glyco_hydro_72: Gluca 99.8 4.5E-21 9.8E-26 194.2 12.0 237 66-378 30-294 (314)
5 PF07983 X8: X8 domain; Inter 99.8 3E-21 6.4E-26 159.8 6.0 70 404-473 1-78 (78)
6 PF07745 Glyco_hydro_53: Glyco 98.8 1.5E-06 3.3E-11 90.6 22.6 247 80-383 26-329 (332)
7 COG3867 Arabinogalactan endo-1 98.3 2.8E-05 6.1E-10 78.9 16.0 206 80-333 65-328 (403)
8 PF00150 Cellulase: Cellulase 98.1 0.00036 7.9E-09 69.4 20.3 130 66-198 11-171 (281)
9 PRK10150 beta-D-glucuronidase; 97.7 0.0065 1.4E-07 68.5 23.4 239 83-383 318-585 (604)
10 smart00633 Glyco_10 Glycosyl h 97.6 0.0057 1.2E-07 61.5 19.5 81 284-382 169-250 (254)
11 PF11790 Glyco_hydro_cc: Glyco 96.9 0.055 1.2E-06 54.0 16.8 192 113-378 39-231 (239)
12 PF00232 Glyco_hydro_1: Glycos 95.4 0.14 3.1E-06 55.8 12.0 272 81-376 61-430 (455)
13 TIGR03356 BGL beta-galactosida 95.3 4.7 0.0001 43.8 23.2 43 81-123 57-118 (427)
14 PF02449 Glyco_hydro_42: Beta- 95.2 0.48 1E-05 50.2 14.8 82 81-164 13-140 (374)
15 PF02836 Glyco_hydro_2_C: Glyc 93.4 1 2.2E-05 46.0 12.3 96 65-162 17-132 (298)
16 PLN02814 beta-glucosidase 90.0 37 0.00079 38.0 23.0 81 81-163 80-187 (504)
17 PLN02998 beta-glucosidase 85.6 65 0.0014 35.9 23.3 82 81-164 85-193 (497)
18 PRK15014 6-phospho-beta-glucos 74.5 1.5E+02 0.0032 33.0 24.5 45 80-124 71-135 (477)
19 COG4782 Uncharacterized protei 73.8 9.6 0.00021 40.6 7.0 59 274-335 124-188 (377)
20 PF03662 Glyco_hydro_79n: Glyc 71.2 13 0.00028 39.1 7.2 86 103-188 113-202 (319)
21 PRK09852 cryptic 6-phospho-bet 69.3 1.9E+02 0.0041 32.1 24.0 46 81-126 74-139 (474)
22 COG3934 Endo-beta-mannanase [C 69.0 19 0.0004 39.9 8.0 186 135-383 123-312 (587)
23 PF00925 GTP_cyclohydro2: GTP 63.9 9.4 0.0002 36.2 4.2 38 83-120 131-168 (169)
24 PRK09593 arb 6-phospho-beta-gl 63.5 2.4E+02 0.0053 31.3 25.5 82 80-163 75-184 (478)
25 smart00481 POLIIIAc DNA polyme 63.3 24 0.00053 27.6 5.9 45 77-121 14-63 (67)
26 PF01229 Glyco_hydro_39: Glyco 60.3 2.7E+02 0.0059 30.7 19.7 250 82-380 44-350 (486)
27 PRK09936 hypothetical protein; 59.1 75 0.0016 33.1 9.9 76 65-140 21-115 (296)
28 PF05990 DUF900: Alpha/beta hy 57.2 42 0.00092 33.3 7.7 41 290-333 42-88 (233)
29 TIGR00505 ribA GTP cyclohydrol 56.8 17 0.00038 35.1 4.8 33 84-116 131-163 (191)
30 PRK00393 ribA GTP cyclohydrola 56.6 18 0.00038 35.3 4.7 33 84-116 134-166 (197)
31 PF14587 Glyco_hydr_30_2: O-Gl 56.0 2.6E+02 0.0056 30.3 13.6 97 103-202 108-227 (384)
32 PRK09525 lacZ beta-D-galactosi 53.5 60 0.0013 39.5 9.5 97 65-163 352-464 (1027)
33 cd02875 GH18_chitobiase Chitob 48.9 1.3E+02 0.0029 31.8 10.3 95 91-191 55-150 (358)
34 PRK12485 bifunctional 3,4-dihy 48.9 21 0.00045 38.3 4.2 34 83-117 330-363 (369)
35 cd00641 GTP_cyclohydro2 GTP cy 46.5 31 0.00068 33.4 4.7 36 84-119 133-168 (193)
36 PRK14019 bifunctional 3,4-dihy 45.2 26 0.00056 37.6 4.2 35 84-119 328-362 (367)
37 COG1433 Uncharacterized conser 43.6 51 0.0011 29.9 5.2 40 81-120 55-94 (121)
38 PRK09314 bifunctional 3,4-dihy 43.4 31 0.00067 36.6 4.4 34 83-116 300-334 (339)
39 PRK09318 bifunctional 3,4-dihy 42.7 35 0.00075 36.9 4.7 39 83-121 319-357 (387)
40 smart00679 CTNS Repeated motif 42.4 17 0.00037 24.3 1.6 14 21-34 1-14 (32)
41 PLN02831 Bifunctional GTP cycl 41.4 36 0.00077 37.5 4.6 38 83-120 372-409 (450)
42 PRK08815 GTP cyclohydrolase; P 41.4 37 0.0008 36.5 4.7 37 84-120 305-341 (375)
43 PRK09311 bifunctional 3,4-dihy 40.8 38 0.00082 36.8 4.7 38 83-120 338-375 (402)
44 TIGR03632 bact_S11 30S ribosom 40.8 59 0.0013 28.7 5.1 37 81-117 50-91 (108)
45 PRK09319 bifunctional 3,4-dihy 40.2 39 0.00085 38.1 4.8 38 83-120 342-379 (555)
46 cd02874 GH18_CFLE_spore_hydrol 40.1 1.2E+02 0.0025 31.2 8.1 83 102-191 48-138 (313)
47 TIGR01579 MiaB-like-C MiaB-lik 39.6 2.8E+02 0.006 29.8 11.2 28 223-251 306-333 (414)
48 cd01543 PBP1_XylR Ligand-bindi 39.4 2.6E+02 0.0057 27.0 10.2 128 80-231 97-238 (265)
49 PRK10340 ebgA cryptic beta-D-g 39.1 2.1E+02 0.0046 34.9 11.1 97 65-163 336-451 (1021)
50 cd02872 GH18_chitolectin_chito 39.1 2.9E+02 0.0062 28.9 11.0 77 111-190 69-151 (362)
51 PF04193 PQ-loop: PQ loop repe 37.9 25 0.00054 27.0 2.1 16 21-36 15-30 (61)
52 PF13377 Peripla_BP_3: Peripla 35.2 3.2E+02 0.0068 24.1 9.5 122 84-231 1-134 (160)
53 KOG0626 Beta-glucosidase, lact 34.6 94 0.002 34.9 6.5 73 293-376 403-486 (524)
54 TIGR03628 arch_S11P archaeal r 34.2 85 0.0018 28.2 5.1 36 81-116 53-101 (114)
55 PF13721 SecD-TM1: SecD export 34.2 1.1E+02 0.0025 26.5 5.8 53 45-97 8-65 (101)
56 PRK13511 6-phospho-beta-galact 33.0 1E+02 0.0022 34.1 6.6 80 80-163 56-162 (469)
57 COG2730 BglC Endoglucanase [Ca 32.6 3.3E+02 0.007 29.4 10.3 105 81-189 76-218 (407)
58 PF14488 DUF4434: Domain of un 32.0 4.4E+02 0.0096 24.8 11.3 100 82-189 24-151 (166)
59 PRK07198 hypothetical protein; 30.8 45 0.00097 36.1 3.2 38 83-120 337-375 (418)
60 PRK09589 celA 6-phospho-beta-g 30.5 1.6E+02 0.0035 32.6 7.6 82 80-163 69-178 (476)
61 PLN02849 beta-glucosidase 30.4 1.1E+02 0.0024 34.2 6.4 81 81-163 82-189 (503)
62 COG0807 RibA GTP cyclohydrolas 30.0 93 0.002 30.5 5.0 39 84-122 133-171 (193)
63 PRK09607 rps11p 30S ribosomal 29.8 1.1E+02 0.0024 28.2 5.1 36 81-116 60-108 (132)
64 PF00411 Ribosomal_S11: Riboso 29.6 86 0.0019 27.6 4.4 37 81-117 50-91 (110)
65 PF14871 GHL6: Hypothetical gl 29.0 1.3E+02 0.0029 27.4 5.6 44 79-122 1-67 (132)
66 PF13547 GTA_TIM: GTA TIM-barr 28.7 95 0.0021 32.2 5.0 94 151-257 18-121 (299)
67 CHL00041 rps11 ribosomal prote 28.6 1.2E+02 0.0026 27.1 5.2 36 81-116 63-103 (116)
68 PRK09989 hypothetical protein; 27.9 5.9E+02 0.013 25.1 11.9 51 66-117 4-58 (258)
69 PRK14330 (dimethylallyl)adenos 27.8 5.2E+02 0.011 28.0 10.9 80 153-250 250-334 (434)
70 COG4519 Uncharacterized protei 27.6 43 0.00092 28.3 1.9 25 295-331 22-46 (95)
71 PRK05309 30S ribosomal protein 27.4 1.3E+02 0.0028 27.4 5.2 36 81-116 67-107 (128)
72 KOG0623 Glutamine amidotransfe 26.7 87 0.0019 33.3 4.4 56 179-239 14-78 (541)
73 PF13756 Stimulus_sens_1: Stim 25.1 79 0.0017 27.9 3.3 26 79-104 2-30 (112)
74 PF01301 Glyco_hydro_35: Glyco 25.0 8E+02 0.017 25.6 13.6 112 81-199 27-180 (319)
75 cd00598 GH18_chitinase-like Th 25.0 2.6E+02 0.0057 26.3 7.2 85 103-191 53-142 (210)
76 COG1671 Uncharacterized protei 24.8 1.7E+02 0.0037 27.5 5.5 89 96-191 3-119 (150)
77 COG0621 MiaB 2-methylthioadeni 24.1 6.6E+02 0.014 27.7 10.8 56 65-120 195-261 (437)
78 PRK13347 coproporphyrinogen II 24.0 3.9E+02 0.0084 29.2 9.1 50 81-130 152-224 (453)
79 PF02579 Nitro_FeMo-Co: Dinitr 22.3 2.5E+02 0.0054 22.9 5.7 40 80-119 42-81 (94)
80 TIGR01233 lacG 6-phospho-beta- 22.2 1.8E+02 0.004 32.1 6.2 47 80-126 55-120 (467)
81 PF14983 DUF4513: Domain of un 22.2 58 0.0013 29.3 1.8 68 2-76 10-78 (132)
82 TIGR00034 aroFGH phospho-2-deh 21.7 1E+03 0.022 25.5 12.5 54 276-334 234-287 (344)
83 PF00331 Glyco_hydro_10: Glyco 21.0 1.8E+02 0.0039 30.3 5.5 90 283-381 219-311 (320)
84 PF04909 Amidohydro_2: Amidohy 20.9 1.7E+02 0.0037 28.3 5.2 54 176-242 84-137 (273)
85 cd06545 GH18_3CO4_chitinase Th 20.9 3E+02 0.0064 27.4 6.9 81 103-191 50-133 (253)
86 PF13547 GTA_TIM: GTA TIM-barr 20.8 2.3E+02 0.0051 29.5 6.1 14 297-310 206-219 (299)
87 PF02811 PHP: PHP domain; Int 20.8 2.4E+02 0.0051 25.4 5.8 45 77-121 15-64 (175)
88 PLN00196 alpha-amylase; Provis 20.5 2.4E+02 0.0052 30.9 6.5 56 67-122 30-115 (428)
89 PTZ00129 40S ribosomal protein 20.4 1.9E+02 0.0041 27.2 4.9 37 81-117 79-128 (149)
90 TIGR02631 xylA_Arthro xylose i 20.1 1.1E+03 0.024 25.3 15.3 159 78-248 32-220 (382)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=1.9e-83 Score=657.54 Aligned_cols=308 Identities=46% Similarity=0.823 Sum_probs=252.8
Q ss_pred eeEEecCCCCCCCChHHHHHHHhhCCCCEEEEccCChHHHHHHHhCCCEEEEecCCchhhhhhhchHHHHHHHHHHhhhh
Q 010142 66 IGVNWGSVSSHKLKPSTVVDLLKDNKIQKVKLFDADPDALVALMRSGIQVMVGIPNEMLATLSSSTAASDLWVRQNVSRY 145 (517)
Q Consensus 66 ~GvnYg~~~~nlps~~~vv~llk~~~i~~VRiY~~d~~vL~A~~~tgi~V~vGV~n~~~~~ia~~~~~A~~Wv~~~v~~y 145 (517)
||||||+.|||||+|++|+++||+++|++||||++|+++|+||+++||+|++||+|++++++++++.+|..||++||.+|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCceEEEEeecCccccCCCCcchhhhHHHHHHHHHHHHHhcCCCCCcEEEcccccccccc-CCCCCcccchhhhHHH
Q 010142 146 LVKGGADIRYIAVGNEPFLTSYAGQFQSYVVPALLNLQQSLAKANLAGYVKLVVPCNADAYES-SLPSQGAFRPELTQIM 224 (517)
Q Consensus 146 ~p~~~~~I~~I~VGNEvl~~~~~~~~~~~ll~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~-~pPs~g~F~~~~~~~~ 224 (517)
+|. ++|++|+||||++... ....|+|||+++|++|++.||+++|||+|++.++++.+ ||||.|.|++++.++|
T Consensus 81 ~~~--~~i~~i~VGnEv~~~~----~~~~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~~ 154 (310)
T PF00332_consen 81 LPA--VNIRYIAVGNEVLTGT----DNAYLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASVM 154 (310)
T ss_dssp TTT--SEEEEEEEEES-TCCS----GGGGHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHHH
T ss_pred Ccc--cceeeeecccccccCc----cceeeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccchhhh
Confidence 997 9999999999999542 12289999999999999999998999999999999998 9999999999999999
Q ss_pred HHHHHHHhhCCCCceeecCcccccCCCCC-CCcccccccCCCccccCCCcccccchhhhHHHHHHHHHHcCCCCCcEEEe
Q 010142 225 TQLVSFLNSNGSPFIVNIYPFLSLYGNSD-FPEDYAFFEGTSHPVTDGPNVYSNAFDGNFDTLVAALSKLGYGQMPIVIG 303 (517)
Q Consensus 225 ~~~ldfL~~~~sp~~vNiYPyf~~~~~~~-i~l~yAlF~~~~~~~~d~~~~Y~nlfda~~Dav~~al~k~g~~~~~vvVs 303 (517)
+++++||..+++|||+|+||||+|..+|. ++||||+|+++...+ |+++.|+||||+|+|++++||+++|+++++|+||
T Consensus 155 ~~~l~fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~~~-D~~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ 233 (310)
T PF00332_consen 155 DPLLKFLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNSGVV-DGGLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVG 233 (310)
T ss_dssp HHHHHHHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS-SE-ETTEEESSHHHHHHHHHHHHHHTTT-TT--EEEE
T ss_pred hHHHHHhhccCCCceeccchhhhccCCcccCCccccccccccccc-ccchhhhHHHHHHHHHHHHHHHHhCCCCceeEEe
Confidence 99999999999999999999999999987 999999999998777 7789999999999999999999999999999999
Q ss_pred ecccCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCCCCCCCCCccEEEeecccccccCCCCCCcccceEeeecCCCceecc
Q 010142 304 EVGWPTDGTISANLTAARTFNQGLINHVLSNKGTPLRPGAPSMDIYLFSLLDEGAKSILPGNFERHWGIFSFDGQAKYPL 383 (517)
Q Consensus 304 ETGWPS~G~~~as~~Na~~y~~~lv~~~~s~~GTP~rpg~~~~~~yiF~lFDE~~K~~~~g~~E~~wGLf~~d~~~ky~l 383 (517)
||||||+|+..|+++||+.|++++++++. .|||+||+. ++++||||+|||+||+ +..+|||||||++||++||++
T Consensus 234 ETGWPs~G~~~a~~~nA~~~~~nl~~~~~--~gt~~~~~~-~~~~y~F~~FdE~~K~--~~~~E~~wGlf~~d~~~ky~~ 308 (310)
T PF00332_consen 234 ETGWPSAGDPGATPENAQAYNQNLIKHVL--KGTPLRPGN-GIDVYIFEAFDENWKP--GPEVERHWGLFYPDGTPKYDL 308 (310)
T ss_dssp EE---SSSSTTCSHHHHHHHHHHHHHHCC--GBBSSSBSS----EEES-SB--TTSS--SSGGGGG--SB-TTSSBSS--
T ss_pred ccccccCCCCCCCcchhHHHHHHHHHHHh--CCCcccCCC-CCeEEEEEEecCcCCC--CCcccceeeeECCCCCeecCC
Confidence 99999999988999999999999999986 799999998 9999999999999996 334999999999999999999
Q ss_pred cC
Q 010142 384 NL 385 (517)
Q Consensus 384 ~~ 385 (517)
+|
T Consensus 309 ~f 310 (310)
T PF00332_consen 309 DF 310 (310)
T ss_dssp --
T ss_pred CC
Confidence 87
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.8e-38 Score=309.11 Aligned_cols=250 Identities=17% Similarity=0.242 Sum_probs=189.5
Q ss_pred CCceeEEecCCCCC--CCChHHHHHHHhhC-CC-CEEEEccCCh----HHHHHHHhCCCEEEEecCCchhhhhhhchHHH
Q 010142 63 ESAIGVNWGSVSSH--KLKPSTVVDLLKDN-KI-QKVKLFDADP----DALVALMRSGIQVMVGIPNEMLATLSSSTAAS 134 (517)
Q Consensus 63 ~~~~GvnYg~~~~n--lps~~~vv~llk~~-~i-~~VRiY~~d~----~vL~A~~~tgi~V~vGV~n~~~~~ia~~~~~A 134 (517)
.+..+|+||++.++ |++.+++..+|..+ .+ ..||+|.+|+ +|++|+...|++|++|||..+..+.+.+ ++
T Consensus 43 ~g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~~~~~-~t- 120 (305)
T COG5309 43 SGFLAFTLGPYNDDGTCKSADQVASDLELLASYTHSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDIHDAVE-KT- 120 (305)
T ss_pred ccccceeccccCCCCCCcCHHHHHhHHHHhccCCceEEEeeccchhhhhhHHHHHhcCceEEEEEeeccchhhhHH-HH-
Confidence 35679999999876 89999997666543 23 3999999885 6889999999999999998643332211 12
Q ss_pred HHHHHHHhhhhcccCCceEEEEeecCccccCCCCcch-hhhHHHHHHHHHHHHHhcCCCCCcEEEccccccccccCCCCC
Q 010142 135 DLWVRQNVSRYLVKGGADIRYIAVGNEPFLTSYAGQF-QSYVVPALLNLQQSLAKANLAGYVKLVVPCNADAYESSLPSQ 213 (517)
Q Consensus 135 ~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~~~~~~-~~~ll~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~~pPs~ 213 (517)
+...+.++..+ +.|++|.||||.|+ |++. +.+|..+|.++|++|+++|++ +||+|++.+.++.+.
T Consensus 121 ---il~ay~~~~~~--d~v~~v~VGnEal~---r~~~tasql~~~I~~vrsav~~agy~--gpV~T~dsw~~~~~n---- 186 (305)
T COG5309 121 ---ILSAYLPYNGW--DDVTTVTVGNEALN---RNDLTASQLIEYIDDVRSAVKEAGYD--GPVTTVDSWNVVINN---- 186 (305)
T ss_pred ---HHHHHhccCCC--CceEEEEechhhhh---cCCCCHHHHHHHHHHHHHHHHhcCCC--CceeecccceeeeCC----
Confidence 34456666554 89999999999995 4454 689999999999999999996 689999998888652
Q ss_pred cccchhhhHHHHHHHHHHhhCCCCceeecCcccccCCCCCCCcccccccCCCccccCCCcccccchhhhHHHHHHHHHHc
Q 010142 214 GAFRPELTQIMTQLVSFLNSNGSPFIVNIYPFLSLYGNSDFPEDYAFFEGTSHPVTDGPNVYSNAFDGNFDTLVAALSKL 293 (517)
Q Consensus 214 g~F~~~~~~~~~~~ldfL~~~~sp~~vNiYPyf~~~~~~~i~l~yAlF~~~~~~~~d~~~~Y~nlfda~~Dav~~al~k~ 293 (517)
+.+++..||+ |+|.||||+...- .++.+ .++--|+.-++++.
T Consensus 187 --------p~l~~~SDfi-------a~N~~aYwd~~~~----------------a~~~~----~f~~~q~e~vqsa~--- 228 (305)
T COG5309 187 --------PELCQASDFI-------AANAHAYWDGQTV----------------ANAAG----TFLLEQLERVQSAC--- 228 (305)
T ss_pred --------hHHhhhhhhh-------hcccchhccccch----------------hhhhh----HHHHHHHHHHHHhc---
Confidence 2345555554 8999999764321 11222 23333455554442
Q ss_pred CCCCCcEEEeecccCCCCCCC----CCHHHHHHHHHHHHHHHhhCCCCCCCCCCCCccEEEeecccccccCCCCCCcccc
Q 010142 294 GYGQMPIVIGEVGWPTDGTIS----ANLTAARTFNQGLINHVLSNKGTPLRPGAPSMDIYLFSLLDEGAKSILPGNFERH 369 (517)
Q Consensus 294 g~~~~~vvVsETGWPS~G~~~----as~~Na~~y~~~lv~~~~s~~GTP~rpg~~~~~~yiF~lFDE~~K~~~~g~~E~~ 369 (517)
| .+++++|+||||||.|... ||++||+.|++++++.+.+. ++++|+|++|||+||....-.+|+|
T Consensus 229 g-~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~~----------G~d~fvfeAFdd~WK~~~~y~VEky 297 (305)
T COG5309 229 G-TKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRSC----------GYDVFVFEAFDDDWKADGSYGVEKY 297 (305)
T ss_pred C-CCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhcc----------CccEEEeeeccccccCccccchhhc
Confidence 3 3499999999999999875 99999999999999987544 8999999999999997433379999
Q ss_pred eEeeecCC
Q 010142 370 WGIFSFDG 377 (517)
Q Consensus 370 wGLf~~d~ 377 (517)
||+++.|+
T Consensus 298 wGv~~s~~ 305 (305)
T COG5309 298 WGVLSSDR 305 (305)
T ss_pred eeeeccCC
Confidence 99998764
No 3
>smart00768 X8 Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.
Probab=99.94 E-value=9.2e-28 Score=202.01 Aligned_cols=83 Identities=46% Similarity=0.886 Sum_probs=80.8
Q ss_pred ceeEeCCCCChHhHHhHhhhcccc-ccccccCCCCCCCC-CCcchhhhHHHhHHHHHhcCCCCCCCCCCceEEEecCCCC
Q 010142 404 RWCVANPSQDLSDVANHIKLACSV-ADCTTLNYGGSCNG-IGAKGNISYAFNSYYQLQMQNEKSCNFDGLGMVTFLDPSV 481 (517)
Q Consensus 404 ~wCV~~~~~~~~~l~~~ldyaCg~-~dC~~I~~~g~c~~-~~~~~~aSya~N~Yyq~~~~~~~~CdF~G~a~~~~~dps~ 481 (517)
+|||+|+++++++||++||||||. +||++|++||+||+ |++++|||||||+|||++++..++|||+|+|+++++|||+
T Consensus 1 ~wCv~~~~~~~~~l~~~~~yaCg~~~dC~~I~~~g~c~~~~~~~~~aS~a~N~YYq~~~~~~~aC~F~G~a~~~~~~ps~ 80 (85)
T smart00768 1 LWCVAKPDADEAALQAALDYACGQGADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFGGTATITTTDPST 80 (85)
T ss_pred CccccCCCCCHHHHHHHHHHHhcCCCCccccCCCCcccCCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCceEEEecCCCC
Confidence 599999999999999999999999 99999999999999 8899999999999999999999999999999999999999
Q ss_pred Cceee
Q 010142 482 GECRF 486 (517)
Q Consensus 482 ~~C~~ 486 (517)
++|+|
T Consensus 81 ~~C~~ 85 (85)
T smart00768 81 GSCKF 85 (85)
T ss_pred CccCC
Confidence 99986
No 4
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=99.85 E-value=4.5e-21 Score=194.24 Aligned_cols=237 Identities=20% Similarity=0.371 Sum_probs=133.7
Q ss_pred eeEEecCCCC-------CCCC-h---HHHHHHHhhCCCCEEEEccCCh-----HHHHHHHhCCCEEEEecCCchhhhhhh
Q 010142 66 IGVNWGSVSS-------HKLK-P---STVVDLLKDNKIQKVKLFDADP-----DALVALMRSGIQVMVGIPNEMLATLSS 129 (517)
Q Consensus 66 ~GvnYg~~~~-------nlps-~---~~vv~llk~~~i~~VRiY~~d~-----~vL~A~~~tgi~V~vGV~n~~~~~ia~ 129 (517)
.||.|-+-++ |..+ + ...+++||++|++.||+|..|| .+|++|++.||+|+++|..+ ..+|.+
T Consensus 30 kGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p-~~sI~r 108 (314)
T PF03198_consen 30 KGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTP-NGSINR 108 (314)
T ss_dssp EEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BT-TBS--T
T ss_pred eeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCC-CccccC
Confidence 6999998776 2222 2 2346799999999999999986 69999999999999999887 445654
Q ss_pred chHHHHHHHHHH-------hhhhcccCCceEEEEeecCccccCCCCcchhhhHHHHHHHHHHHHHhcCCCCCcEEEcccc
Q 010142 130 STAASDLWVRQN-------VSRYLVKGGADIRYIAVGNEPFLTSYAGQFQSYVVPALLNLQQSLAKANLAGYVKLVVPCN 202 (517)
Q Consensus 130 ~~~~A~~Wv~~~-------v~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~ll~am~nv~~aL~~~gl~~~IkVsT~~~ 202 (517)
.. -+..|-... |..+.. .+|+.++.+||||++...+...++.+.+++|++|+.+++.+++ +|+|+.+.+
T Consensus 109 ~~-P~~sw~~~l~~~~~~vid~fa~--Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R-~IPVGYsaa 184 (314)
T PF03198_consen 109 SD-PAPSWNTDLLDRYFAVIDAFAK--YDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYR-SIPVGYSAA 184 (314)
T ss_dssp TS-------HHHHHHHHHHHHHHTT---TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEEE-
T ss_pred CC-CcCCCCHHHHHHHHHHHHHhcc--CCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCC-CCceeEEcc
Confidence 32 234673222 333322 2899999999999976444456799999999999999999995 699998643
Q ss_pred ccccccCCCCCcccchhhhHHHHHHHHHHhhCC-----CCceeecCcccccCCCCCCCcccccccCCCccccCCCccccc
Q 010142 203 ADAYESSLPSQGAFRPELTQIMTQLVSFLNSNG-----SPFIVNIYPFLSLYGNSDFPEDYAFFEGTSHPVTDGPNVYSN 277 (517)
Q Consensus 203 ~~vl~~~pPs~g~F~~~~~~~~~~~ldfL~~~~-----sp~~vNiYPyf~~~~~~~i~l~yAlF~~~~~~~~d~~~~Y~n 277 (517)
. ..+...++.+||.|.. |+|++|.|-|+. +.+ |+.+ .|..
T Consensus 185 D----------------~~~~r~~~a~Yl~Cg~~~~~iDf~g~N~Y~WCg---~St-------f~~S---------Gy~~ 229 (314)
T PF03198_consen 185 D----------------DAEIRQDLANYLNCGDDDERIDFFGLNSYEWCG---DST-------FETS---------GYDR 229 (314)
T ss_dssp ------------------TTTHHHHHHHTTBTT-----S-EEEEE----S---S---------HHHH---------SHHH
T ss_pred C----------------ChhHHHHHHHHhcCCCcccccceeeeccceecC---CCc-------cccc---------cHHH
Confidence 2 1123456889999864 689999998754 322 4322 1433
Q ss_pred chhhhHHHHHHHHHHcCCCCCcEEEeecccCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCCCCCCCCCccEEEeeccccc
Q 010142 278 AFDGNFDTLVAALSKLGYGQMPIVIGEVGWPTDGTISANLTAARTFNQGLINHVLSNKGTPLRPGAPSMDIYLFSLLDEG 357 (517)
Q Consensus 278 lfda~~Dav~~al~k~g~~~~~vvVsETGWPS~G~~~as~~Na~~y~~~lv~~~~s~~GTP~rpg~~~~~~yiF~lFDE~ 357 (517)
+. ... .++ .+||+++|.||.+.. .|+|.+ +..+.+..+|....| + .+||.|.|
T Consensus 230 l~--------~~f--~~y-~vPvffSEyGCn~~~--------pR~f~e--v~aly~~~Mt~v~SG--G---ivYEy~~e- 282 (314)
T PF03198_consen 230 LT--------KEF--SNY-SVPVFFSEYGCNTVT--------PRTFTE--VPALYSPEMTDVWSG--G---IVYEYFQE- 282 (314)
T ss_dssp HH--------HHH--TT--SS-EEEEEE---SSS--------S---TH--HHHHTSHHHHTTEEE--E---EES-SB---
T ss_pred HH--------HHh--hCC-CCCeEEcccCCCCCC--------CccchH--hHHhhCccchhheec--e---EEEEEecc-
Confidence 32 222 233 699999999998654 377766 667776666766666 5 48999988
Q ss_pred ccCCCCCCcccceEeeecCCC
Q 010142 358 AKSILPGNFERHWGIFSFDGQ 378 (517)
Q Consensus 358 ~K~~~~g~~E~~wGLf~~d~~ 378 (517)
+++|||+..++.
T Consensus 283 ---------~n~yGlV~~~~~ 294 (314)
T PF03198_consen 283 ---------ANNYGLVEISGD 294 (314)
T ss_dssp ---------SSS--SEEE-TT
T ss_pred ---------CCceEEEEEcCC
Confidence 678999987654
No 5
>PF07983 X8: X8 domain; InterPro: IPR012946 The X8 domain [] contains 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen [] as well as at the C terminus of family 17 glycosyl hydrolases []. This domain may be involved in carbohydrate binding.; PDB: 2JON_A 2W61_A 2W62_A 2W63_A.
Probab=99.83 E-value=3e-21 Score=159.84 Aligned_cols=70 Identities=34% Similarity=0.763 Sum_probs=59.9
Q ss_pred ceeEeCCCCChHhHHhHhhhcccc--ccccccCCCCCC-----CC-CCcchhhhHHHhHHHHHhcCCCCCCCCCCceE
Q 010142 404 RWCVANPSQDLSDVANHIKLACSV--ADCTTLNYGGSC-----NG-IGAKGNISYAFNSYYQLQMQNEKSCNFDGLGM 473 (517)
Q Consensus 404 ~wCV~~~~~~~~~l~~~ldyaCg~--~dC~~I~~~g~c-----~~-~~~~~~aSya~N~Yyq~~~~~~~~CdF~G~a~ 473 (517)
+|||+++++++++|+++|||||++ +||++|+++|+. |+ |+.++|||||||+|||++++.+.+|||+|+||
T Consensus 1 l~Cv~~~~~~~~~l~~~l~~aC~~~~~dC~~I~~~g~~G~YG~~S~C~~~~~lSya~N~YY~~~~~~~~~C~F~G~at 78 (78)
T PF07983_consen 1 LWCVAKPDADDKELQDLLDYACGQGGVDCSPIQPNGTTGVYGAYSMCSPRQHLSYAFNQYYQKQGRNSSACDFSGNAT 78 (78)
T ss_dssp -EEEE-TTS-HHHHHHHHHHHTTT-SSSCCCC-EETTTTEE-TTTTS-CCHHHHHHHHHHHHHHTSSCCG-SS-STEE
T ss_pred CcceeCCCCCHHHHHHHHHHHHcCCCCChhhhCCCCcccccccccCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCCCC
Confidence 699999999999999999999999 999999999994 34 77899999999999999999999999999996
No 6
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=98.76 E-value=1.5e-06 Score=90.56 Aligned_cols=247 Identities=17% Similarity=0.232 Sum_probs=121.5
Q ss_pred hHHHHHHHhhCCCCEEEEc---c------CC-hH---HHHHHHhCCCEEEEecCCchh---------h------hhhhch
Q 010142 80 PSTVVDLLKDNKIQKVKLF---D------AD-PD---ALVALMRSGIQVMVGIPNEML---------A------TLSSST 131 (517)
Q Consensus 80 ~~~vv~llk~~~i~~VRiY---~------~d-~~---vL~A~~~tgi~V~vGV~n~~~---------~------~ia~~~ 131 (517)
..++.++||+.|++.|||= + .| .. ..+.+++.||+|+|.+--+|- + ++++=.
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH
Confidence 4678999999999877764 1 11 12 345567899999999865421 0 111111
Q ss_pred HHHHHHHHHHhhhhcccCCceEEEEeecCccccC--C--CCcchhhhHHHHHHHHHHHHHhcCCCCCcEEEccccccccc
Q 010142 132 AASDLWVRQNVSRYLVKGGADIRYIAVGNEPFLT--S--YAGQFQSYVVPALLNLQQSLAKANLAGYVKLVVPCNADAYE 207 (517)
Q Consensus 132 ~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~--~--~~~~~~~~ll~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~ 207 (517)
++..++.++-+.. +...+..+..|-||||+-.. + .+..-.+.+...++.-.+++|+..- .+||-.-. .
T Consensus 106 ~~v~~yT~~vl~~-l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p--~~kV~lH~-----~ 177 (332)
T PF07745_consen 106 KAVYDYTKDVLQA-LKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDP--NIKVMLHL-----A 177 (332)
T ss_dssp HHHHHHHHHHHHH-HHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSS--TSEEEEEE-----S
T ss_pred HHHHHHHHHHHHH-HHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCC--CCcEEEEE-----C
Confidence 2333444443333 23346789999999997642 1 1112235555666666666766443 46653211 1
Q ss_pred cCCCCCcccchhhhHHHHHHHHHHhhCC---CCceeecCcccccCCCCCCCcccccccCCCccccCCCcccccchhhhHH
Q 010142 208 SSLPSQGAFRPELTQIMTQLVSFLNSNG---SPFIVNIYPFLSLYGNSDFPEDYAFFEGTSHPVTDGPNVYSNAFDGNFD 284 (517)
Q Consensus 208 ~~pPs~g~F~~~~~~~~~~~ldfL~~~~---sp~~vNiYPyf~~~~~~~i~l~yAlF~~~~~~~~d~~~~Y~nlfda~~D 284 (517)
+ |.. .+.+.-..+-|...+ |.++++.||||... ++...+
T Consensus 178 ~--~~~-------~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~-----------------------------l~~l~~ 219 (332)
T PF07745_consen 178 N--GGD-------NDLYRWFFDNLKAAGVDFDVIGLSYYPFWHGT-----------------------------LEDLKN 219 (332)
T ss_dssp ---TTS-------HHHHHHHHHHHHHTTGG-SEEEEEE-STTST------------------------------HHHHHH
T ss_pred C--CCc-------hHHHHHHHHHHHhcCCCcceEEEecCCCCcch-----------------------------HHHHHH
Confidence 1 110 012233444444433 67899999985420 111122
Q ss_pred HHHHHHHHcCCCCCcEEEeecccCCCCCC-----------------CCCHHHHHHHHHHHHHHHhhCCCCCCCCCCCCcc
Q 010142 285 TLVAALSKLGYGQMPIVIGEVGWPTDGTI-----------------SANLTAARTFNQGLINHVLSNKGTPLRPGAPSMD 347 (517)
Q Consensus 285 av~~al~k~g~~~~~vvVsETGWPS~G~~-----------------~as~~Na~~y~~~lv~~~~s~~GTP~rpg~~~~~ 347 (517)
.+...-++. +|+|+|.|||||..-.. .+|++.|+.|++.+++.+.+..+ +. ++-
T Consensus 220 ~l~~l~~ry---~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~-----~~-g~G 290 (332)
T PF07745_consen 220 NLNDLASRY---GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNVPN-----GG-GLG 290 (332)
T ss_dssp HHHHHHHHH---T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS-------TT-EEE
T ss_pred HHHHHHHHh---CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHhcc-----CC-eEE
Confidence 222222343 58999999999997111 16899999999999999876311 11 455
Q ss_pred EEEeecc-ccc---ccCCCCC-CcccceEeeecCCCceecc
Q 010142 348 IYLFSLL-DEG---AKSILPG-NFERHWGIFSFDGQAKYPL 383 (517)
Q Consensus 348 ~yiF~lF-DE~---~K~~~~g-~~E~~wGLf~~d~~~ky~l 383 (517)
+|+-|.- -.. |+.. .| ..|+. +||+.+|++--.|
T Consensus 291 vfYWeP~w~~~~~~~~~~-~g~~w~n~-~lFD~~g~~l~sl 329 (332)
T PF07745_consen 291 VFYWEPAWIPVENGWDWG-GGSSWDNQ-ALFDFNGNALPSL 329 (332)
T ss_dssp EEEE-TT-GGGTTHHHHT-TTSSSSBG-SSB-TTSBB-GGG
T ss_pred EEeeccccccCCcccccC-CCCCcccc-ccCCCCCCCchHh
Confidence 5655431 111 1111 22 23333 7888777764433
No 7
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.28 E-value=2.8e-05 Score=78.86 Aligned_cols=206 Identities=14% Similarity=0.219 Sum_probs=110.0
Q ss_pred hHHHHHHHhhCCCCEEEE--c----cCCh--------------HHHHHHHhCCCEEEEecCCchhhhhhhchHHHHHHH-
Q 010142 80 PSTVVDLLKDNKIQKVKL--F----DADP--------------DALVALMRSGIQVMVGIPNEMLATLSSSTAASDLWV- 138 (517)
Q Consensus 80 ~~~vv~llk~~~i~~VRi--Y----~~d~--------------~vL~A~~~tgi~V~vGV~n~~~~~ia~~~~~A~~Wv- 138 (517)
.++..+.||..|++.||| | |.|. ++-+-+.+.||||++..--+|-=.-..-+..-.+|.
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPkaW~~ 144 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPKAWEN 144 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCcHHhhh
Confidence 466788999999987776 3 4441 233445678999999986654211111122233452
Q ss_pred ------HHHhhhh-------cccCCceEEEEeecCccccC--CCCcch--hhhHHHHHHHHHHHHHhcCCCCCcEEEccc
Q 010142 139 ------RQNVSRY-------LVKGGADIRYIAVGNEPFLT--SYAGQF--QSYVVPALLNLQQSLAKANLAGYVKLVVPC 201 (517)
Q Consensus 139 ------~~~v~~y-------~p~~~~~I~~I~VGNEvl~~--~~~~~~--~~~ll~am~nv~~aL~~~gl~~~IkVsT~~ 201 (517)
+..|-.| ..+.+..+..+-||||.-.. +..++. ...+-..++.-.+++|.. +..|||-.-
T Consensus 145 l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev--~p~ikv~lH- 221 (403)
T COG3867 145 LNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREV--SPTIKVALH- 221 (403)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhc--CCCceEEEE-
Confidence 2222222 12245678889999998632 111211 122222233333333332 235776432
Q ss_pred cccccccCCCCCcccchhhhHHHHHHHHHHhhCC---CCceeecCcccccCCCCCCCcccccccCCCccccCCCcccccc
Q 010142 202 NADAYESSLPSQGAFRPELTQIMTQLVSFLNSNG---SPFIVNIYPFLSLYGNSDFPEDYAFFEGTSHPVTDGPNVYSNA 278 (517)
Q Consensus 202 ~~~vl~~~pPs~g~F~~~~~~~~~~~ldfL~~~~---sp~~vNiYPyf~~~~~~~i~l~yAlF~~~~~~~~d~~~~Y~nl 278 (517)
+.+ |-..+.||- +.|=|...+ |.|++--||||...- .+ + ++.
T Consensus 222 ----la~-g~~n~~y~~--------~fd~ltk~nvdfDVig~SyYpyWhgtl------------------~n--L--~~n 266 (403)
T COG3867 222 ----LAE-GENNSLYRW--------IFDELTKRNVDFDVIGSSYYPYWHGTL------------------NN--L--TTN 266 (403)
T ss_pred ----ecC-CCCCchhhH--------HHHHHHHcCCCceEEeeeccccccCcH------------------HH--H--HhH
Confidence 222 112234432 223333333 567888999965321 11 0 111
Q ss_pred hhhhHHHHHHHHHHcCCCCCcEEEeeccc--------------CCCCCCC---CCHHHHHHHHHHHHHHHhh
Q 010142 279 FDGNFDTLVAALSKLGYGQMPIVIGEVGW--------------PTDGTIS---ANLTAARTFNQGLINHVLS 333 (517)
Q Consensus 279 fda~~Dav~~al~k~g~~~~~vvVsETGW--------------PS~G~~~---as~~Na~~y~~~lv~~~~s 333 (517)
+ +.+.. + -+|.|+|.||+. |+.+... .+++-|++|.+++|+.+..
T Consensus 267 l----~dia~---r---Y~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~n 328 (403)
T COG3867 267 L----NDIAS---R---YHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKN 328 (403)
T ss_pred H----HHHHH---H---hcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHh
Confidence 2 22211 1 268999999998 6555331 7788999999999998875
No 8
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.11 E-value=0.00036 Score=69.40 Aligned_cols=130 Identities=14% Similarity=0.062 Sum_probs=80.2
Q ss_pred eeEEecCCCCCCCChHHHHHHHhhCCCCEEEEccC-------------Ch-------HHHHHHHhCCCEEEEecCCch--
Q 010142 66 IGVNWGSVSSHKLKPSTVVDLLKDNKIQKVKLFDA-------------DP-------DALVALMRSGIQVMVGIPNEM-- 123 (517)
Q Consensus 66 ~GvnYg~~~~nlps~~~vv~llk~~~i~~VRiY~~-------------d~-------~vL~A~~~tgi~V~vGV~n~~-- 123 (517)
.|+|-. ..+.. ..++.++.+++.|++.|||.-. +. .+|+++++.||+|+|.+....
T Consensus 11 ~G~n~~-w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~w 88 (281)
T PF00150_consen 11 RGFNTH-WYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPGW 88 (281)
T ss_dssp EEEEET-TSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTTC
T ss_pred eeeecc-cCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCccc
Confidence 466655 22222 6788899999999999999722 11 478899999999999998740
Q ss_pred --hhhhhhchHHHHHHHHH---HhhhhcccCCceEEEEeecCccccCCCC----cchhhhHHHHHHHHHHHHHhcCCCCC
Q 010142 124 --LATLSSSTAASDLWVRQ---NVSRYLVKGGADIRYIAVGNEPFLTSYA----GQFQSYVVPALLNLQQSLAKANLAGY 194 (517)
Q Consensus 124 --~~~ia~~~~~A~~Wv~~---~v~~y~p~~~~~I~~I~VGNEvl~~~~~----~~~~~~ll~am~nv~~aL~~~gl~~~ 194 (517)
.............|+++ .+...+.. ...|.++=+.||+...... ......+.+.++.+.+++|+.+-...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~la~~y~~-~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~ 167 (281)
T PF00150_consen 89 ANGGDGYGNNDTAQAWFKSFWRALAKRYKD-NPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHL 167 (281)
T ss_dssp SSSTSTTTTHHHHHHHHHHHHHHHHHHHTT-TTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSE
T ss_pred cccccccccchhhHHHHHhhhhhhccccCC-CCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcce
Confidence 01111112223344333 23333321 2467799999999864211 00125678889999999999987643
Q ss_pred cEEE
Q 010142 195 VKLV 198 (517)
Q Consensus 195 IkVs 198 (517)
|-|+
T Consensus 168 i~~~ 171 (281)
T PF00150_consen 168 IIVG 171 (281)
T ss_dssp EEEE
T ss_pred eecC
Confidence 4333
No 9
>PRK10150 beta-D-glucuronidase; Provisional
Probab=97.71 E-value=0.0065 Score=68.46 Aligned_cols=239 Identities=18% Similarity=0.118 Sum_probs=126.3
Q ss_pred HHHHHhhCCCCEEEEc--cCChHHHHHHHhCCCEEEEecCCchh---------------hhhh------hchHHHHHHHH
Q 010142 83 VVDLLKDNKIQKVKLF--DADPDALVALMRSGIQVMVGIPNEML---------------ATLS------SSTAASDLWVR 139 (517)
Q Consensus 83 vv~llk~~~i~~VRiY--~~d~~vL~A~~~tgi~V~vGV~n~~~---------------~~ia------~~~~~A~~Wv~ 139 (517)
.+++||+.|++.||+- -.++..+.++-..||-|+.-++.-.. .... ........-++
T Consensus 318 d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (604)
T PRK10150 318 DHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIR 397 (604)
T ss_pred HHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccccccccccccccccccccccccccccchhHHHHHHHHHH
Confidence 4678999999999993 23568999999999999976643100 0010 00111122244
Q ss_pred HHhhhhcccCCceEEEEeecCccccCCCCcchhhhHHHHHHHHHHHHHhcCCCCCcEEEccccccccccCCCCCcccchh
Q 010142 140 QNVSRYLVKGGADIRYIAVGNEPFLTSYAGQFQSYVVPALLNLQQSLAKANLAGYVKLVVPCNADAYESSLPSQGAFRPE 219 (517)
Q Consensus 140 ~~v~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~ll~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~~pPs~g~F~~~ 219 (517)
+.|.++.. .-.|..-.+|||.-.. .+ .....++.+.+.+++..=. =+|+.+..+ .. .|.. +.
T Consensus 398 ~mv~r~~N--HPSIi~Ws~gNE~~~~---~~---~~~~~~~~l~~~~k~~Dpt--R~vt~~~~~---~~-~~~~----~~ 459 (604)
T PRK10150 398 ELIARDKN--HPSVVMWSIANEPASR---EQ---GAREYFAPLAELTRKLDPT--RPVTCVNVM---FA-TPDT----DT 459 (604)
T ss_pred HHHHhccC--CceEEEEeeccCCCcc---ch---hHHHHHHHHHHHHHhhCCC--CceEEEecc---cC-Cccc----cc
Confidence 55555432 2568899999997521 11 2233445555555555432 235544211 00 0100 00
Q ss_pred hhHHHHHHHHHHhhCCCCceeecCcccccCCCCCCCcccccccCCCccccCCCcccccchhhhHHHHHHHHHHcCCCCCc
Q 010142 220 LTQIMTQLVSFLNSNGSPFIVNIYPFLSLYGNSDFPEDYAFFEGTSHPVTDGPNVYSNAFDGNFDTLVAALSKLGYGQMP 299 (517)
Q Consensus 220 ~~~~~~~~ldfL~~~~sp~~vNiYPyf~~~~~~~i~l~yAlF~~~~~~~~d~~~~Y~nlfda~~Dav~~al~k~g~~~~~ 299 (517)
+.+++ |..+.|.|+ .|..+.. + .. .....++..+... .++ + ++|
T Consensus 460 ----~~~~~-------Dv~~~N~Y~--~wy~~~~---~----------~~----~~~~~~~~~~~~~---~~~--~-~kP 503 (604)
T PRK10150 460 ----VSDLV-------DVLCLNRYY--GWYVDSG---D----------LE----TAEKVLEKELLAW---QEK--L-HKP 503 (604)
T ss_pred ----ccCcc-------cEEEEcccc--eecCCCC---C----------HH----HHHHHHHHHHHHH---HHh--c-CCC
Confidence 11223 445788765 1211110 0 00 0011122222111 111 2 799
Q ss_pred EEEeecccCCCC------CCCCCHHHHHHHHHHHHHHHhhCCCCCCCCCCCCccEEEeecccccccCCCCCCcccceEee
Q 010142 300 IVIGEVGWPTDG------TISANLTAARTFNQGLINHVLSNKGTPLRPGAPSMDIYLFSLLDEGAKSILPGNFERHWGIF 373 (517)
Q Consensus 300 vvVsETGWPS~G------~~~as~~Na~~y~~~lv~~~~s~~GTP~rpg~~~~~~yiF~lFDE~~K~~~~g~~E~~wGLf 373 (517)
++++|+|+.+.- +..-+.+.|..|++...+.+.+ +|. -+-.|+..+||-.........-..+.||+
T Consensus 504 ~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~------~p~--~~G~~iW~~~D~~~~~g~~~~~g~~~Gl~ 575 (604)
T PRK10150 504 IIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDR------VPA--VVGEQVWNFADFATSQGILRVGGNKKGIF 575 (604)
T ss_pred EEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhc------CCc--eEEEEEEeeeccCCCCCCcccCCCcceeE
Confidence 999999975521 1225678888888877665543 344 34568999999544321000113578999
Q ss_pred ecCCCceecc
Q 010142 374 SFDGQAKYPL 383 (517)
Q Consensus 374 ~~d~~~ky~l 383 (517)
+.||+||-..
T Consensus 576 ~~dr~~k~~~ 585 (604)
T PRK10150 576 TRDRQPKSAA 585 (604)
T ss_pred cCCCCChHHH
Confidence 9999998755
No 10
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.64 E-value=0.0057 Score=61.46 Aligned_cols=81 Identities=17% Similarity=0.144 Sum_probs=55.5
Q ss_pred HHHHHHHHHcCCCCCcEEEeecccCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCCCCCCCCCccEEEeecccc-cccCCC
Q 010142 284 DTLVAALSKLGYGQMPIVIGEVGWPTDGTISANLTAARTFNQGLINHVLSNKGTPLRPGAPSMDIYLFSLLDE-GAKSIL 362 (517)
Q Consensus 284 Dav~~al~k~g~~~~~vvVsETGWPS~G~~~as~~Na~~y~~~lv~~~~s~~GTP~rpg~~~~~~yiF~lFDE-~~K~~~ 362 (517)
+.+.+.|++++--++||+|||.+-|..+ +++.++.+++.+++.+.+. |+ ...+++..+.|. .|.+
T Consensus 169 ~~~~~~l~~~~~~g~pi~iTE~dv~~~~----~~~~qA~~~~~~l~~~~~~------p~--v~gi~~Wg~~d~~~W~~-- 234 (254)
T smart00633 169 AEIRAALDRFASLGLEIQITELDISGYP----NPQAQAADYEEVFKACLAH------PA--VTGVTVWGVTDKYSWLD-- 234 (254)
T ss_pred HHHHHHHHHHHHcCCceEEEEeecCCCC----cHHHHHHHHHHHHHHHHcC------CC--eeEEEEeCCccCCcccC--
Confidence 3444555555444799999999998753 3478899999999988765 22 233556666664 3542
Q ss_pred CCCcccceEeeecCCCceec
Q 010142 363 PGNFERHWGIFSFDGQAKYP 382 (517)
Q Consensus 363 ~g~~E~~wGLf~~d~~~ky~ 382 (517)
+.+-|||+.|+++|-.
T Consensus 235 ----~~~~~L~d~~~~~kpa 250 (254)
T smart00633 235 ----GGAPLLFDANYQPKPA 250 (254)
T ss_pred ----CCCceeECCCCCCChh
Confidence 2467999999988754
No 11
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=96.87 E-value=0.055 Score=54.03 Aligned_cols=192 Identities=17% Similarity=0.149 Sum_probs=100.5
Q ss_pred CEEEEecCCchhhhhhhchHHHHHHHHHHhhhhcccCCceEEEEeecCccccCCCCcch-hhhHHHHHHHHHHHHHhcCC
Q 010142 113 IQVMVGIPNEMLATLSSSTAASDLWVRQNVSRYLVKGGADIRYIAVGNEPFLTSYAGQF-QSYVVPALLNLQQSLAKANL 191 (517)
Q Consensus 113 i~V~vGV~n~~~~~ia~~~~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~~~~~~-~~~ll~am~nv~~aL~~~gl 191 (517)
++-+=.+|.....+ ..|+++ |... + ..++.|..=||+=... ..++ +.+.+...++..+.|+.
T Consensus 39 ~efvPmlwg~~~~~--------~~~~~~-v~~~-~---~~~~~ll~fNEPD~~~-qsn~~p~~aa~~w~~~~~~~~~--- 101 (239)
T PF11790_consen 39 LEFVPMLWGPGSDD--------DDWLAN-VQNA-H---PGSKHLLGFNEPDLPG-QSNMSPEEAAALWKQYMNPLRS--- 101 (239)
T ss_pred eeEeecccCCCCCc--------hHHHHH-HHhh-c---cCccceeeecCCCCCC-CCCCCHHHHHHHHHHHHhHhhc---
Confidence 77777888654322 122222 3332 2 5788999999986432 1222 34555555555555553
Q ss_pred CCCcEEEccccccccccCCCCCcccchhhhHHHHHHHHHHhhCCCCceeecCcccccCCCCCCCcccccccCCCccccCC
Q 010142 192 AGYVKLVVPCNADAYESSLPSQGAFRPELTQIMTQLVSFLNSNGSPFIVNIYPFLSLYGNSDFPEDYAFFEGTSHPVTDG 271 (517)
Q Consensus 192 ~~~IkVsT~~~~~vl~~~pPs~g~F~~~~~~~~~~~ldfL~~~~sp~~vNiYPyf~~~~~~~i~l~yAlF~~~~~~~~d~ 271 (517)
..+|++.|.....-.. +| +-.+.|.+.++-+.....+=.|++|.| ..+
T Consensus 102 -~~~~l~sPa~~~~~~~-~~-------~g~~Wl~~F~~~~~~~~~~D~iavH~Y---~~~-------------------- 149 (239)
T PF11790_consen 102 -PGVKLGSPAVAFTNGG-TP-------GGLDWLSQFLSACARGCRVDFIAVHWY---GGD-------------------- 149 (239)
T ss_pred -CCcEEECCeecccCCC-CC-------CccHHHHHHHHhcccCCCccEEEEecC---CcC--------------------
Confidence 3578876642111000 01 111233333333220112224455554 100
Q ss_pred CcccccchhhhHHHHHHHHHHcCCCCCcEEEeecccCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCCCCCCCCCccEEEe
Q 010142 272 PNVYSNAFDGNFDTLVAALSKLGYGQMPIVIGEVGWPTDGTISANLTAARTFNQGLINHVLSNKGTPLRPGAPSMDIYLF 351 (517)
Q Consensus 272 ~~~Y~nlfda~~Dav~~al~k~g~~~~~vvVsETGWPS~G~~~as~~Na~~y~~~lv~~~~s~~GTP~rpg~~~~~~yiF 351 (517)
++...+.|....++.| +||+|||.|+.. +....+.+.++.|++..+..+.+. +. --.++||
T Consensus 150 -------~~~~~~~i~~~~~~~~---kPIWITEf~~~~-~~~~~~~~~~~~fl~~~~~~ld~~------~~--VeryawF 210 (239)
T PF11790_consen 150 -------ADDFKDYIDDLHNRYG---KPIWITEFGCWN-GGSQGSDEQQASFLRQALPWLDSQ------PY--VERYAWF 210 (239)
T ss_pred -------HHHHHHHHHHHHHHhC---CCEEEEeecccC-CCCCCCHHHHHHHHHHHHHHHhcC------CC--eeEEEec
Confidence 1112233333334444 999999999876 445578899999999999888643 33 2357778
Q ss_pred ecccccccCCCCCCcccceEeeecCCC
Q 010142 352 SLLDEGAKSILPGNFERHWGIFSFDGQ 378 (517)
Q Consensus 352 ~lFDE~~K~~~~g~~E~~wGLf~~d~~ 378 (517)
...+. +. +...+-.|++.+|+
T Consensus 211 ~~~~~-~~-----~~~~~~~L~~~~G~ 231 (239)
T PF11790_consen 211 GFMND-GS-----GVNPNSALLDADGS 231 (239)
T ss_pred ccccc-cC-----CCccccccccCCCC
Confidence 73332 22 23555567777764
No 12
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=95.40 E-value=0.14 Score=55.83 Aligned_cols=272 Identities=17% Similarity=0.239 Sum_probs=125.9
Q ss_pred HHHHHHHhhCCCCEEEEc--------c-----CCh-------HHHHHHHhCCCEEEEecCCchhhhhhh------chHHH
Q 010142 81 STVVDLLKDNKIQKVKLF--------D-----ADP-------DALVALMRSGIQVMVGIPNEMLATLSS------STAAS 134 (517)
Q Consensus 81 ~~vv~llk~~~i~~VRiY--------~-----~d~-------~vL~A~~~tgi~V~vGV~n~~~~~ia~------~~~~A 134 (517)
++.+++||++|++..|.- + .|+ +++..|...||+.+|.+.--+++..-. ++..
T Consensus 61 ~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~~ggw~~~~~- 139 (455)
T PF00232_consen 61 KEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLEDYGGWLNRET- 139 (455)
T ss_dssp HHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHHHTGGGSTHH-
T ss_pred hHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceeecccccCHHH-
Confidence 678889999999988874 1 121 588999999999999997654433111 1111
Q ss_pred HHHHHHHhhhhcccCCceEEEEeecCccccCC---C------Cc--c------hhhhHHHHHHHHHHHHHhcCCCCCcEE
Q 010142 135 DLWVRQNVSRYLVKGGADIRYIAVGNEPFLTS---Y------AG--Q------FQSYVVPALLNLQQSLAKANLAGYVKL 197 (517)
Q Consensus 135 ~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~---~------~~--~------~~~~ll~am~nv~~aL~~~gl~~~IkV 197 (517)
..|..+-..--....++.|+.-+.=||+.... | .+ + ..-.++-|-..+.+++++..- +.+|
T Consensus 140 ~~~F~~Ya~~~~~~~gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~--~~~I 217 (455)
T PF00232_consen 140 VDWFARYAEFVFERFGDRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYP--DGKI 217 (455)
T ss_dssp HHHHHHHHHHHHHHHTTTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTC--TSEE
T ss_pred HHHHHHHHHHHHHHhCCCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhccc--ceEE
Confidence 12222211111111247888888899976421 0 01 0 012345555555666666653 3566
Q ss_pred EccccccccccCCCCCcccchh-----------------------hhHHHHHH--------------HHHHhhCCCCcee
Q 010142 198 VVPCNADAYESSLPSQGAFRPE-----------------------LTQIMTQL--------------VSFLNSNGSPFIV 240 (517)
Q Consensus 198 sT~~~~~vl~~~pPs~g~F~~~-----------------------~~~~~~~~--------------ldfL~~~~sp~~v 240 (517)
+..++..... |-...-.++ +...|+.. ++.|..+.|++++
T Consensus 218 Gi~~~~~~~~---P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGi 294 (455)
T PF00232_consen 218 GIALNFSPFY---PLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGI 294 (455)
T ss_dssp EEEEEEEEEE---ESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEE
T ss_pred eccccccccC---CCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhh
Confidence 6665543322 111110011 00011111 2233456788999
Q ss_pred ecCcccccCCCC--CCCccccc---ccCC---CccccCCCcccccchhhhHHHHHHHHHHc--CCCCCcEEEeecccCCC
Q 010142 241 NIYPFLSLYGNS--DFPEDYAF---FEGT---SHPVTDGPNVYSNAFDGNFDTLVAALSKL--GYGQMPIVIGEVGWPTD 310 (517)
Q Consensus 241 NiYPyf~~~~~~--~i~l~yAl---F~~~---~~~~~d~~~~Y~nlfda~~Dav~~al~k~--g~~~~~vvVsETGWPS~ 310 (517)
|-|.=.--...+ ..+..+.. +... .....+.+..+ + =..++..|..+ -|+++||+|||.|++..
T Consensus 295 NYYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i----~--P~Gl~~~L~~l~~~Y~~~pI~ITENG~~~~ 368 (455)
T PF00232_consen 295 NYYTSRYVRADPNPSSPPSYDSDAPFGQPYNPGGPTTDWGWEI----Y--PEGLRDVLRYLKDRYGNPPIYITENGIGDP 368 (455)
T ss_dssp EESEEEEEEESSSSTSSTTHEEEESEEEECETSSEBCTTSTBB----E--THHHHHHHHHHHHHHTSSEEEEEEE---EE
T ss_pred ccccceeeccCccccccccccCCccccccccccccccccCccc----c--cchHhhhhhhhccccCCCcEEEeccccccc
Confidence 977532211121 11111110 1000 00001111111 1 12333333322 25679999999999876
Q ss_pred CCCC-------CCHHHHHHHHHHHHHHHhhCCCCCCCCCCCCccEEEeeccccc-ccCCCCCCcccceEeeecC
Q 010142 311 GTIS-------ANLTAARTFNQGLINHVLSNKGTPLRPGAPSMDIYLFSLLDEG-AKSILPGNFERHWGIFSFD 376 (517)
Q Consensus 311 G~~~-------as~~Na~~y~~~lv~~~~s~~GTP~rpg~~~~~~yiF~lFDE~-~K~~~~g~~E~~wGLf~~d 376 (517)
.... --+.--+.+++.+.+.+. .|-++ .-+|..++.|-- |. .+..+.|||++.|
T Consensus 369 ~~~~~~~v~D~~Ri~yl~~hl~~v~~Ai~--dGv~V------~GY~~WSl~Dn~Ew~----~Gy~~rfGl~~VD 430 (455)
T PF00232_consen 369 DEVDDGKVDDDYRIDYLQDHLNQVLKAIE--DGVNV------RGYFAWSLLDNFEWA----EGYKKRFGLVYVD 430 (455)
T ss_dssp TTCTTSHBSHHHHHHHHHHHHHHHHHHHH--TT-EE------EEEEEETSB---BGG----GGGGSE--SEEEE
T ss_pred ccccccCcCcHHHHHHHHHHHHHHHhhhc--cCCCe------eeEeeeccccccccc----cCccCccCceEEc
Confidence 6421 112234555555555552 33322 246778888842 43 2478999999988
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=95.33 E-value=4.7 Score=43.84 Aligned_cols=43 Identities=19% Similarity=0.309 Sum_probs=33.7
Q ss_pred HHHHHHHhhCCCCEEEEc--------c----CCh-------HHHHHHHhCCCEEEEecCCch
Q 010142 81 STVVDLLKDNKIQKVKLF--------D----ADP-------DALVALMRSGIQVMVGIPNEM 123 (517)
Q Consensus 81 ~~vv~llk~~~i~~VRiY--------~----~d~-------~vL~A~~~tgi~V~vGV~n~~ 123 (517)
++.+++||++|++.+|+= + .|. .+|..+.+.||+++|.+.--+
T Consensus 57 ~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd 118 (427)
T TIGR03356 57 EEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWD 118 (427)
T ss_pred HHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCC
Confidence 677899999999999863 1 121 588999999999999995433
No 14
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=95.18 E-value=0.48 Score=50.25 Aligned_cols=82 Identities=21% Similarity=0.304 Sum_probs=51.2
Q ss_pred HHHHHHHhhCCCCEEEEccCC-----h-----------HHHHHHHhCCCEEEEecCCchhhhh-----------------
Q 010142 81 STVVDLLKDNKIQKVKLFDAD-----P-----------DALVALMRSGIQVMVGIPNEMLATL----------------- 127 (517)
Q Consensus 81 ~~vv~llk~~~i~~VRiY~~d-----~-----------~vL~A~~~tgi~V~vGV~n~~~~~i----------------- 127 (517)
++.++++|+.|++.|||.... | .+|..++..||+|+|+++....+..
T Consensus 13 ~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~~ 92 (374)
T PF02449_consen 13 EEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGRR 92 (374)
T ss_dssp HHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTSB
T ss_pred HHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCCc
Confidence 566888999999999984321 1 4788889999999999975421110
Q ss_pred ---------hh-c---hHHHHHHHHHHhhhhcccCCceEEEEeecCcccc
Q 010142 128 ---------SS-S---TAASDLWVRQNVSRYLVKGGADIRYIAVGNEPFL 164 (517)
Q Consensus 128 ---------a~-~---~~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~ 164 (517)
.- + ...+...++..+..|.. ...|.++.|+||.-.
T Consensus 93 ~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~--~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 93 RGFGSRQHYCPNSPAYREYARRFIRALAERYGD--HPAVIGWQIDNEPGY 140 (374)
T ss_dssp EECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTT--TTTEEEEEECCSTTC
T ss_pred CccCCccccchhHHHHHHHHHHHHHHHHhhccc--cceEEEEEeccccCc
Confidence 00 0 12334445554455533 257999999999764
No 15
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=93.42 E-value=1 Score=46.03 Aligned_cols=96 Identities=20% Similarity=0.212 Sum_probs=55.1
Q ss_pred ceeEEecCCCCC---CCChHHH---HHHHhhCCCCEEEEccC--ChHHHHHHHhCCCEEEEecCCchh---hhh------
Q 010142 65 AIGVNWGSVSSH---KLKPSTV---VDLLKDNKIQKVKLFDA--DPDALVALMRSGIQVMVGIPNEML---ATL------ 127 (517)
Q Consensus 65 ~~GvnYg~~~~n---lps~~~v---v~llk~~~i~~VRiY~~--d~~vL~A~~~tgi~V~vGV~n~~~---~~i------ 127 (517)
..|||+...... .++.+.. ++++|+.|++.||+... ++..+.++-..||-|+..++.... ...
T Consensus 17 l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~ 96 (298)
T PF02836_consen 17 LRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYD 96 (298)
T ss_dssp EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCT
T ss_pred EEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccC
Confidence 359998864322 2344443 56789999999999643 468999999999999988876110 000
Q ss_pred hhch---HHHHHHHHHHhhhhcccCCceEEEEeecCcc
Q 010142 128 SSST---AASDLWVRQNVSRYLVKGGADIRYIAVGNEP 162 (517)
Q Consensus 128 a~~~---~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEv 162 (517)
..++ +.+..-+++.|..+... -.|..=.+|||.
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~NH--PSIi~W~~gNE~ 132 (298)
T PF02836_consen 97 ADDPEFRENAEQELREMVRRDRNH--PSIIMWSLGNES 132 (298)
T ss_dssp TTSGGHHHHHHHHHHHHHHHHTT---TTEEEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHHHHcCcCc--CchheeecCccC
Confidence 0111 22333455566655322 457788899998
No 16
>PLN02814 beta-glucosidase
Probab=89.98 E-value=37 Score=37.95 Aligned_cols=81 Identities=16% Similarity=0.288 Sum_probs=50.7
Q ss_pred HHHHHHHhhCCCCEEEE-------cc-----CCh-------HHHHHHHhCCCEEEEecCCchhhhhhhchHHHHHHHHHH
Q 010142 81 STVVDLLKDNKIQKVKL-------FD-----ADP-------DALVALMRSGIQVMVGIPNEMLATLSSSTAASDLWVRQN 141 (517)
Q Consensus 81 ~~vv~llk~~~i~~VRi-------Y~-----~d~-------~vL~A~~~tgi~V~vGV~n~~~~~ia~~~~~A~~Wv~~~ 141 (517)
+|.+++||++|++.-|. += .|+ +++.++...||+-+|.+.--+++..-.+ .--.|....
T Consensus 80 ~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~--~yGGW~n~~ 157 (504)
T PLN02814 80 KEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLED--EYGGWINRK 157 (504)
T ss_pred HHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHH--hcCCcCChh
Confidence 67899999999888775 21 232 5899999999999999987655432111 111232211
Q ss_pred h----hhhc----ccCCceEEEEeecCccc
Q 010142 142 V----SRYL----VKGGADIRYIAVGNEPF 163 (517)
Q Consensus 142 v----~~y~----p~~~~~I~~I~VGNEvl 163 (517)
+ ..|. ...++.|+.-+.=||+.
T Consensus 158 ~i~~F~~YA~~~f~~fgdrVk~WiT~NEP~ 187 (504)
T PLN02814 158 IIEDFTAFADVCFREFGEDVKLWTTINEAT 187 (504)
T ss_pred HHHHHHHHHHHHHHHhCCcCCEEEeccccc
Confidence 1 1111 11347888888888875
No 17
>PLN02998 beta-glucosidase
Probab=85.62 E-value=65 Score=35.91 Aligned_cols=82 Identities=20% Similarity=0.256 Sum_probs=51.1
Q ss_pred HHHHHHHhhCCCCEEEEc-------c-----CCh-------HHHHHHHhCCCEEEEecCCchhhhhhhchHHHHHHHHHH
Q 010142 81 STVVDLLKDNKIQKVKLF-------D-----ADP-------DALVALMRSGIQVMVGIPNEMLATLSSSTAASDLWVRQN 141 (517)
Q Consensus 81 ~~vv~llk~~~i~~VRiY-------~-----~d~-------~vL~A~~~tgi~V~vGV~n~~~~~ia~~~~~A~~Wv~~~ 141 (517)
+|.++++|++|++.-|.= = .|+ +++.++...||+-+|.+.--+++.--.+ ..-.|+...
T Consensus 85 ~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~--~yGGW~n~~ 162 (497)
T PLN02998 85 KEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALED--EYGGWLSQE 162 (497)
T ss_pred HHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHH--hhCCcCCch
Confidence 678999999998888752 1 232 5899999999999999987555431111 112332221
Q ss_pred h----hhhc----ccCCceEEEEeecCcccc
Q 010142 142 V----SRYL----VKGGADIRYIAVGNEPFL 164 (517)
Q Consensus 142 v----~~y~----p~~~~~I~~I~VGNEvl~ 164 (517)
+ ..|. ...++.|+.-+.=||+..
T Consensus 163 ~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~ 193 (497)
T PLN02998 163 IVRDFTAYADTCFKEFGDRVSHWTTINEVNV 193 (497)
T ss_pred HHHHHHHHHHHHHHHhcCcCCEEEEccCcch
Confidence 1 1111 113477888888888653
No 18
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=74.48 E-value=1.5e+02 Score=32.98 Aligned_cols=45 Identities=11% Similarity=0.239 Sum_probs=34.3
Q ss_pred hHHHHHHHhhCCCCEEEE-------cc------CCh-------HHHHHHHhCCCEEEEecCCchh
Q 010142 80 PSTVVDLLKDNKIQKVKL-------FD------ADP-------DALVALMRSGIQVMVGIPNEML 124 (517)
Q Consensus 80 ~~~vv~llk~~~i~~VRi-------Y~------~d~-------~vL~A~~~tgi~V~vGV~n~~~ 124 (517)
-++.+++||++|++..|+ +- .|+ .++.++...||+.+|.+.=-++
T Consensus 71 y~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dl 135 (477)
T PRK15014 71 YKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEM 135 (477)
T ss_pred cHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCC
Confidence 478899999998877765 31 232 5899999999999999954343
No 19
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.76 E-value=9.6 Score=40.62 Aligned_cols=59 Identities=19% Similarity=0.432 Sum_probs=41.6
Q ss_pred ccccchhhhHHHHHHHHHHcCCCCCcEEEeecccCCCCCCC------CCHHHHHHHHHHHHHHHhhCC
Q 010142 274 VYSNAFDGNFDTLVAALSKLGYGQMPIVIGEVGWPTDGTIS------ANLTAARTFNQGLINHVLSNK 335 (517)
Q Consensus 274 ~Y~nlfda~~Dav~~al~k~g~~~~~vvVsETGWPS~G~~~------as~~Na~~y~~~lv~~~~s~~ 335 (517)
.|.|-|++-+--.....--.|++.++|++| |||.|.-. .|...++..++++++.+...+
T Consensus 124 GfNntf~dav~R~aqI~~d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~~ 188 (377)
T COG4782 124 GFNNTFEDAVYRTAQIVHDSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLATDK 188 (377)
T ss_pred ccCCchhHHHHHHHHHHhhcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHhCC
Confidence 366667644333333344567888999998 99999752 677778888899999887653
No 20
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=71.22 E-value=13 Score=39.11 Aligned_cols=86 Identities=14% Similarity=0.214 Sum_probs=35.2
Q ss_pred HHHHHHHhCCCEEEEecCCchhhhhhhchHHHHHHHHHHhhh---hcccCCceEEEEeecCccccCCCCcch-hhhHHHH
Q 010142 103 DALVALMRSGIQVMVGIPNEMLATLSSSTAASDLWVRQNVSR---YLVKGGADIRYIAVGNEPFLTSYAGQF-QSYVVPA 178 (517)
Q Consensus 103 ~vL~A~~~tgi~V~vGV~n~~~~~ia~~~~~A~~Wv~~~v~~---y~p~~~~~I~~I~VGNEvl~~~~~~~~-~~~ll~a 178 (517)
++.+-+..+|.+|+.|+.--.-.....+....-.|--+|-+. |....+=+|.+-=.|||.-..+..... +.++-.-
T Consensus 113 ~l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qyakD 192 (319)
T PF03662_consen 113 ELNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYAKD 192 (319)
T ss_dssp HHHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT--HHHHHHH
T ss_pred HHHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccCHHHHHHH
Confidence 344555679999999995321111111113345787776544 433223457788899997642211112 3455555
Q ss_pred HHHHHHHHHh
Q 010142 179 LLNLQQSLAK 188 (517)
Q Consensus 179 m~nv~~aL~~ 188 (517)
...+|+.|++
T Consensus 193 ~~~Lr~il~~ 202 (319)
T PF03662_consen 193 FIQLRKILNE 202 (319)
T ss_dssp H---HHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 21
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=69.30 E-value=1.9e+02 Score=32.10 Aligned_cols=46 Identities=11% Similarity=0.192 Sum_probs=35.2
Q ss_pred HHHHHHHhhCCCCEEEE-------cc------CCh-------HHHHHHHhCCCEEEEecCCchhhh
Q 010142 81 STVVDLLKDNKIQKVKL-------FD------ADP-------DALVALMRSGIQVMVGIPNEMLAT 126 (517)
Q Consensus 81 ~~vv~llk~~~i~~VRi-------Y~------~d~-------~vL~A~~~tgi~V~vGV~n~~~~~ 126 (517)
++.+++|+++|++..|+ +- .|+ .++.++.+.||+.+|.+.--+++.
T Consensus 74 ~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~ 139 (474)
T PRK09852 74 KEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPM 139 (474)
T ss_pred HHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCH
Confidence 67889999998877775 21 232 588999999999999998765544
No 22
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=69.02 E-value=19 Score=39.86 Aligned_cols=186 Identities=18% Similarity=0.189 Sum_probs=97.1
Q ss_pred HHHHHHHhhhhcccCCceEEEEeecCccccCCCCcchhhhHHHHHHHHHHHHHhcCCCCCcEEEccccccccccCCCCCc
Q 010142 135 DLWVRQNVSRYLVKGGADIRYIAVGNEPFLTSYAGQFQSYVVPALLNLQQSLAKANLAGYVKLVVPCNADAYESSLPSQG 214 (517)
Q Consensus 135 ~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~ll~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~~pPs~g 214 (517)
...|..-|.+|--. ..|.+-..-||.+... ......++...+.+.++++..+=+.-|.|+-+... |..+.|-.+
T Consensus 123 kkyvedlVk~yk~~--ptI~gw~l~Ne~lv~~--p~s~N~f~~w~~emy~yiK~ldd~hlvsvGD~~sp--~~~~~pyN~ 196 (587)
T COG3934 123 KKYVEDLVKPYKLD--PTIAGWALRNEPLVEA--PISVNNFWDWSGEMYAYIKWLDDGHLVSVGDPASP--WPQYAPYNA 196 (587)
T ss_pred HHHHHHHhhhhccC--hHHHHHHhcCCccccc--cCChhHHHHHHHHHHHHhhccCCCCeeecCCcCCc--ccccCCccc
Confidence 34566666666432 5677778889976532 22356788888888999988775544555544332 444434444
Q ss_pred ccchhhhHHHHHHHHHHhhCCCCceeecCcccccCCCCCCCcccccccCCCccccCCCccccc-chhhhHHHHHHHHHHc
Q 010142 215 AFRPELTQIMTQLVSFLNSNGSPFIVNIYPFLSLYGNSDFPEDYAFFEGTSHPVTDGPNVYSN-AFDGNFDTLVAALSKL 293 (517)
Q Consensus 215 ~F~~~~~~~~~~~ldfL~~~~sp~~vNiYPyf~~~~~~~i~l~yAlF~~~~~~~~d~~~~Y~n-lfda~~Dav~~al~k~ 293 (517)
.|.. || =.-++||++.. ++ |+.+.. .|-. .+|- + ..+
T Consensus 197 r~~v----------Dy-------a~~hLY~hyd~--sl-----~~r~s~----------~yg~~~l~i--~------~~~ 234 (587)
T COG3934 197 RFYV----------DY-------AANHLYRHYDT--SL-----VSRVST----------VYGKPYLDI--P------TIM 234 (587)
T ss_pred ceee----------cc-------ccchhhhhccC--Ch-----hheeee----------eecchhhcc--c------hhc
Confidence 4432 23 24688986442 22 111110 0100 1110 0 112
Q ss_pred CCCCCcEEEeecccCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCCCCCCCCCccEEEeecccccccCCCCC---Ccccce
Q 010142 294 GYGQMPIVIGEVGWPTDGTISANLTAARTFNQGLINHVLSNKGTPLRPGAPSMDIYLFSLLDEGAKSILPG---NFERHW 370 (517)
Q Consensus 294 g~~~~~vvVsETGWPS~G~~~as~~Na~~y~~~lv~~~~s~~GTP~rpg~~~~~~yiF~lFDE~~K~~~~g---~~E~~w 370 (517)
+-+||+.-|.|-|++-...-|+.. +.++. | +....| . +-=..-|+=|-+--. ..+. ..|-.|
T Consensus 235 --g~~pV~leefGfsta~g~e~s~ay-fiw~~-l---al~~gg----d---GaLiwclsdf~~gsd-d~ey~w~p~el~f 299 (587)
T COG3934 235 --GWQPVNLEEFGFSTAFGQENSPAY-FIWIR-L---ALDTGG----D---GALIWCLSDFHLGSD-DSEYTWGPMELEF 299 (587)
T ss_pred --ccceeeccccCCcccccccccchh-hhhhh-h---HHhhcC----C---ceEEEEecCCccCCC-CCCCcccccccee
Confidence 248999999999986544322211 22222 2 222211 1 111233443332111 1122 568899
Q ss_pred EeeecCCCceecc
Q 010142 371 GIFSFDGQAKYPL 383 (517)
Q Consensus 371 GLf~~d~~~ky~l 383 (517)
||.+.|+.+|+..
T Consensus 300 giIradgpek~~a 312 (587)
T COG3934 300 GIIRADGPEKIDA 312 (587)
T ss_pred eeecCCCchhhhH
Confidence 9999999999875
No 23
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=63.87 E-value=9.4 Score=36.21 Aligned_cols=38 Identities=29% Similarity=0.550 Sum_probs=27.6
Q ss_pred HHHHHhhCCCCEEEEccCChHHHHHHHhCCCEEEEecC
Q 010142 83 VVDLLKDNKIQKVKLFDADPDALVALMRSGIQVMVGIP 120 (517)
Q Consensus 83 vv~llk~~~i~~VRiY~~d~~vL~A~~~tgi~V~vGV~ 120 (517)
-++.|+.+|+++||+.+.+|.-+.++.+.||+|.=-||
T Consensus 131 gaqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 131 GAQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp HHHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE-
T ss_pred HHHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEec
Confidence 47899999999999999999999999999999975443
No 24
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=63.53 E-value=2.4e+02 Score=31.25 Aligned_cols=82 Identities=13% Similarity=0.128 Sum_probs=49.9
Q ss_pred hHHHHHHHhhCCCCEEEEc-------c------CCh-------HHHHHHHhCCCEEEEecCCchhhhhhhchHHHHHHHH
Q 010142 80 PSTVVDLLKDNKIQKVKLF-------D------ADP-------DALVALMRSGIQVMVGIPNEMLATLSSSTAASDLWVR 139 (517)
Q Consensus 80 ~~~vv~llk~~~i~~VRiY-------~------~d~-------~vL~A~~~tgi~V~vGV~n~~~~~ia~~~~~A~~Wv~ 139 (517)
-++.+++||++|++.-|.= - .|+ +++.+|...||+-+|.+.--+++..-.+ ..-.|..
T Consensus 75 y~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~--~~GGW~n 152 (478)
T PRK09593 75 YKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLIE--EYGGWRN 152 (478)
T ss_pred hHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHHh--hcCCCCC
Confidence 4678999999998887752 1 232 5889999999999999976555431111 1123322
Q ss_pred HHh----hhhc----ccCCceEEEEeecCccc
Q 010142 140 QNV----SRYL----VKGGADIRYIAVGNEPF 163 (517)
Q Consensus 140 ~~v----~~y~----p~~~~~I~~I~VGNEvl 163 (517)
..+ ..|. ...++.|+.-+-=||+.
T Consensus 153 ~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~ 184 (478)
T PRK09593 153 RKMVGFYERLCRTLFTRYKGLVKYWLTFNEIN 184 (478)
T ss_pred hHHHHHHHHHHHHHHHHhcCcCCEEEeecchh
Confidence 211 1111 11247787777778864
No 25
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=63.29 E-value=24 Score=27.56 Aligned_cols=45 Identities=20% Similarity=0.384 Sum_probs=36.7
Q ss_pred CCChHHHHHHHhhCCCCEEEEccCC-----hHHHHHHHhCCCEEEEecCC
Q 010142 77 KLKPSTVVDLLKDNKIQKVKLFDAD-----PDALVALMRSGIQVMVGIPN 121 (517)
Q Consensus 77 lps~~~vv~llk~~~i~~VRiY~~d-----~~vL~A~~~tgi~V~vGV~n 121 (517)
.-++++.++..+++|++.|=+=|-+ +...+.++..||+|+.|+..
T Consensus 14 ~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~ 63 (67)
T smart00481 14 ALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEA 63 (67)
T ss_pred cCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEE
Confidence 3458899999999999999888777 35567777899999999853
No 26
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=60.27 E-value=2.7e+02 Score=30.73 Aligned_cols=250 Identities=16% Similarity=0.217 Sum_probs=109.9
Q ss_pred HHHHHHhhCCCCEEEEccCC-----------------------hHHHHHHHhCCCEEEEecCCchhhhhhhc--------
Q 010142 82 TVVDLLKDNKIQKVKLFDAD-----------------------PDALVALMRSGIQVMVGIPNEMLATLSSS-------- 130 (517)
Q Consensus 82 ~vv~llk~~~i~~VRiY~~d-----------------------~~vL~A~~~tgi~V~vGV~n~~~~~ia~~-------- 130 (517)
++..+.+..||+.||+...= -.++..+.+.||+-+|-+.-. ...+++.
T Consensus 44 ~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f~-p~~~~~~~~~~~~~~ 122 (486)
T PF01229_consen 44 QLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGFM-PMALASGYQTVFWYK 122 (486)
T ss_dssp HHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-SB--GGGBSS--EETTTT
T ss_pred HHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEec-hhhhcCCCCcccccc
Confidence 33444456789999987321 147889999999887766421 1111111
Q ss_pred -----hHHHHHH---H----HHHhhhhcccCCceEE--EEeecCccccCCCCc-chhhhHHHHHHHHHHHHHhcCCCCCc
Q 010142 131 -----TAASDLW---V----RQNVSRYLVKGGADIR--YIAVGNEPFLTSYAG-QFQSYVVPALLNLQQSLAKANLAGYV 195 (517)
Q Consensus 131 -----~~~A~~W---v----~~~v~~y~p~~~~~I~--~I~VGNEvl~~~~~~-~~~~~ll~am~nv~~aL~~~gl~~~I 195 (517)
+..-..| | +..+.+|.. ..|+ .+=|=||+=...... ....+-....+.+.++|++.. ..+
T Consensus 123 ~~~~pp~~~~~W~~lv~~~~~h~~~RYG~---~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~--p~~ 197 (486)
T PF01229_consen 123 GNISPPKDYEKWRDLVRAFARHYIDRYGI---EEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVD--PEL 197 (486)
T ss_dssp EE-S-BS-HHHHHHHHHHHHHHHHHHHHH---HHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH---TTS
T ss_pred CCcCCcccHHHHHHHHHHHHHHHHhhcCC---ccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhC--CCC
Confidence 1111223 3 333334321 1222 456789964332111 112334556666777777764 468
Q ss_pred EEEccccccccccCCCCCcccchhhhHHHHHHHHHHhhCC---CCceeecCcccccCCCCCCCcccccccCCCccccCCC
Q 010142 196 KLVVPCNADAYESSLPSQGAFRPELTQIMTQLVSFLNSNG---SPFIVNIYPFLSLYGNSDFPEDYAFFEGTSHPVTDGP 272 (517)
Q Consensus 196 kVsT~~~~~vl~~~pPs~g~F~~~~~~~~~~~ldfL~~~~---sp~~vNiYPyf~~~~~~~i~l~yAlF~~~~~~~~d~~ 272 (517)
||+-|-.. + .....+...++|+...+ |++..+.||+-... ....... ..-
T Consensus 198 ~vGGp~~~--~------------~~~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~------------~~~~~~~-~~~ 250 (486)
T PF01229_consen 198 KVGGPAFA--W------------AYDEWCEDFLEFCKGNNCPLDFISFHSYGTDSAE------------DINENMY-ERI 250 (486)
T ss_dssp EEEEEEEE--T------------T-THHHHHHHHHHHHCT---SEEEEEEE-BESES------------E-SS-EE-EEB
T ss_pred cccCcccc--c------------cHHHHHHHHHHHHhcCCCCCCEEEEEeccccccc------------ccchhHH-hhh
Confidence 89876100 0 01134567778887655 44466666641100 0000000 000
Q ss_pred cccccchhhhHHHHHHHHHHcCCCCCcEEEeecccCCCCCCC----CCHHHHHHHHHHHHHHHhhCCCCCCCCCCCCccE
Q 010142 273 NVYSNAFDGNFDTLVAALSKLGYGQMPIVIGEVGWPTDGTIS----ANLTAARTFNQGLINHVLSNKGTPLRPGAPSMDI 348 (517)
Q Consensus 273 ~~Y~nlfda~~Dav~~al~k~g~~~~~vvVsETGWPS~G~~~----as~~Na~~y~~~lv~~~~s~~GTP~rpg~~~~~~ 348 (517)
.....+++ ++.-+...+...+.+++++.++| |.+.-... -|.-+|+-..++++..... .++.
T Consensus 251 ~~~~~~~~-~~~~~~~~~~~e~~p~~~~~~tE--~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~~-----------~l~~ 316 (486)
T PF01229_consen 251 EDSRRLFP-ELKETRPIINDEADPNLPLYITE--WNASISPRNPQHDTCFKAAYIAKNLLSNDGA-----------FLDS 316 (486)
T ss_dssp --HHHHHH-HHHHHHHHHHTSSSTT--EEEEE--EES-SSTT-GGGGSHHHHHHHHH-HHHHGGG-----------T-SE
T ss_pred hhHHHHHH-HHHHHHHHHhhccCCCCceeecc--cccccCCCcchhccccchhhHHHHHHHhhhh-----------hhhh
Confidence 00011111 12222234555678899999999 77644332 5555666555556655421 1233
Q ss_pred EE---e-ecccccccCCCCCCcccceEeeecCCCce
Q 010142 349 YL---F-SLLDEGAKSILPGNFERHWGIFSFDGQAK 380 (517)
Q Consensus 349 yi---F-~lFDE~~K~~~~g~~E~~wGLf~~d~~~k 380 (517)
|- | ..|.|+-.+ ...+-.-|||++.+|-+|
T Consensus 317 ~sywt~sD~Fee~~~~--~~pf~ggfGLlt~~gI~K 350 (486)
T PF01229_consen 317 FSYWTFSDRFEENGTP--RKPFHGGFGLLTKLGIPK 350 (486)
T ss_dssp EEES-SBS---TTSS---SSSSSS-S-SEECCCEE-
T ss_pred hhccchhhhhhccCCC--CCceecchhhhhccCCCc
Confidence 22 1 234443222 224566699999998554
No 27
>PRK09936 hypothetical protein; Provisional
Probab=59.13 E-value=75 Score=33.05 Aligned_cols=76 Identities=16% Similarity=0.271 Sum_probs=48.7
Q ss_pred ceeEEecCCCCC-CCChHHH---HHHHhhCCCCEEEEc-----cCC--------hHHHHHHHhCCCEEEEecCCch--hh
Q 010142 65 AIGVNWGSVSSH-KLKPSTV---VDLLKDNKIQKVKLF-----DAD--------PDALVALMRSGIQVMVGIPNEM--LA 125 (517)
Q Consensus 65 ~~GvnYg~~~~n-lps~~~v---v~llk~~~i~~VRiY-----~~d--------~~vL~A~~~tgi~V~vGV~n~~--~~ 125 (517)
--|+=|-+...| --++++- .+.++.+|++.+=+= +.| ...|+++...||+|.||++-|. -.
T Consensus 21 ~~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~Dp~y~q 100 (296)
T PRK09936 21 MKGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYADPEFFM 100 (296)
T ss_pred cccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCChHHHH
Confidence 357779999876 4556654 455667898766542 223 2578999999999999999864 12
Q ss_pred hhhhchHHHHHHHHH
Q 010142 126 TLSSSTAASDLWVRQ 140 (517)
Q Consensus 126 ~ia~~~~~A~~Wv~~ 140 (517)
.+..|..+-++|++.
T Consensus 101 ~~~~d~~~~~~yl~~ 115 (296)
T PRK09936 101 HQKQDGAALESYLNR 115 (296)
T ss_pred HHhcCchhHHHHHHH
Confidence 332333333445443
No 28
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=57.21 E-value=42 Score=33.31 Aligned_cols=41 Identities=17% Similarity=0.430 Sum_probs=27.0
Q ss_pred HHHcCCCCCcEEEeecccCCCCCCC------CCHHHHHHHHHHHHHHHhh
Q 010142 290 LSKLGYGQMPIVIGEVGWPTDGTIS------ANLTAARTFNQGLINHVLS 333 (517)
Q Consensus 290 l~k~g~~~~~vvVsETGWPS~G~~~------as~~Na~~y~~~lv~~~~s 333 (517)
...++++.++|+++ |||.|... .+....+..+..+++.+..
T Consensus 42 ~~~~~~~~~~i~Fs---WPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~ 88 (233)
T PF05990_consen 42 AHDLGFPGVVILFS---WPSDGSLLGYFYDRESARFSGPALARFLRDLAR 88 (233)
T ss_pred HHHhCCCceEEEEE---cCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 44567777777766 99999753 4444555566667766653
No 29
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=56.78 E-value=17 Score=35.11 Aligned_cols=33 Identities=30% Similarity=0.661 Sum_probs=30.6
Q ss_pred HHHHhhCCCCEEEEccCChHHHHHHHhCCCEEE
Q 010142 84 VDLLKDNKIQKVKLFDADPDALVALMRSGIQVM 116 (517)
Q Consensus 84 v~llk~~~i~~VRiY~~d~~vL~A~~~tgi~V~ 116 (517)
++.|+.+|+++||+.+.++.=+.++.+.||+|.
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 789999999999999999888889999999987
No 30
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=56.58 E-value=18 Score=35.30 Aligned_cols=33 Identities=33% Similarity=0.638 Sum_probs=30.7
Q ss_pred HHHHhhCCCCEEEEccCChHHHHHHHhCCCEEE
Q 010142 84 VDLLKDNKIQKVKLFDADPDALVALMRSGIQVM 116 (517)
Q Consensus 84 v~llk~~~i~~VRiY~~d~~vL~A~~~tgi~V~ 116 (517)
++.|+.+|++++|+.+.++.-+.++.+.||+|.
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~ 166 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIV 166 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 789999999999999999878889999999997
No 31
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=55.98 E-value=2.6e+02 Score=30.33 Aligned_cols=97 Identities=19% Similarity=0.137 Sum_probs=50.7
Q ss_pred HHHHHHHhCCCEEEEecCCchhhhh----------------hhc-hHHHHHHHHHHhhhhcccCCceEEEEeecCccccC
Q 010142 103 DALVALMRSGIQVMVGIPNEMLATL----------------SSS-TAASDLWVRQNVSRYLVKGGADIRYIAVGNEPFLT 165 (517)
Q Consensus 103 ~vL~A~~~tgi~V~vGV~n~~~~~i----------------a~~-~~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~ 165 (517)
..|+++++.|+..+++..|+..--+ ..+ ..+-...+.+-++ ++...+.+|++|.-=||+-..
T Consensus 108 wfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~-~~~~~GI~f~~IsP~NEP~~~ 186 (384)
T PF14587_consen 108 WFLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVK-HYKKWGINFDYISPFNEPQWN 186 (384)
T ss_dssp HHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHH-HHHCTT--EEEEE--S-TTS-
T ss_pred HHHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHH-HHHhcCCccceeCCcCCCCCC
Confidence 4789999999999998888631111 110 0112233444333 335557899999999999865
Q ss_pred CCC--cc---h-hhhHHHHHHHHHHHHHhcCCCCCcEEEcccc
Q 010142 166 SYA--GQ---F-QSYVVPALLNLQQSLAKANLAGYVKLVVPCN 202 (517)
Q Consensus 166 ~~~--~~---~-~~~ll~am~nv~~aL~~~gl~~~IkVsT~~~ 202 (517)
+.. ++ + ..+....|+.++.+|++.||..+ |..+++
T Consensus 187 W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~--I~~~Ea 227 (384)
T PF14587_consen 187 WAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTK--ISACEA 227 (384)
T ss_dssp GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-E--EEEEEE
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCce--EEecch
Confidence 311 11 1 35677788899999999999744 444443
No 32
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=53.50 E-value=60 Score=39.51 Aligned_cols=97 Identities=23% Similarity=0.146 Sum_probs=58.0
Q ss_pred ceeEEecCCCC---CCCChHH---HHHHHhhCCCCEEEEcc--CChHHHHHHHhCCCEEEEecCCchh-----hhhhhch
Q 010142 65 AIGVNWGSVSS---HKLKPST---VVDLLKDNKIQKVKLFD--ADPDALVALMRSGIQVMVGIPNEML-----ATLSSST 131 (517)
Q Consensus 65 ~~GvnYg~~~~---nlps~~~---vv~llk~~~i~~VRiY~--~d~~vL~A~~~tgi~V~vGV~n~~~-----~~ia~~~ 131 (517)
..|+|+-.... .-.+++. .++++|+.|++.||+-. .++..++++-..||.|+--++.+.. ..+..++
T Consensus 352 lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp 431 (1027)
T PRK09525 352 IRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDP 431 (1027)
T ss_pred EEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCH
Confidence 35888753211 1234444 46688999999999943 2468899999999999988654210 0111122
Q ss_pred H---HHHHHHHHHhhhhcccCCceEEEEeecCccc
Q 010142 132 A---ASDLWVRQNVSRYLVKGGADIRYIAVGNEPF 163 (517)
Q Consensus 132 ~---~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl 163 (517)
. +..+-+++.|.+... .-.|..-++|||.-
T Consensus 432 ~~~~~~~~~~~~mV~RdrN--HPSIi~WSlgNE~~ 464 (1027)
T PRK09525 432 RWLPAMSERVTRMVQRDRN--HPSIIIWSLGNESG 464 (1027)
T ss_pred HHHHHHHHHHHHHHHhCCC--CCEEEEEeCccCCC
Confidence 1 122224444544422 24688889999964
No 33
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=48.92 E-value=1.3e+02 Score=31.80 Aligned_cols=95 Identities=15% Similarity=0.197 Sum_probs=56.7
Q ss_pred CCCEEEEccC-ChHHHHHHHhCCCEEEEecCCchhhhhhhchHHHHHHHHHHhhhhcccCCceEEEEeecCccccCCCCc
Q 010142 91 KIQKVKLFDA-DPDALVALMRSGIQVMVGIPNEMLATLSSSTAASDLWVRQNVSRYLVKGGADIRYIAVGNEPFLTSYAG 169 (517)
Q Consensus 91 ~i~~VRiY~~-d~~vL~A~~~tgi~V~vGV~n~~~~~ia~~~~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~~~~ 169 (517)
.+++|-+|+. |++++..+...|++|++..-.. .+.+ +++..-..|+++ +..++.+ -...+|-+==|-.... ..
T Consensus 55 ~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~~l-~~~~~R~~fi~s-iv~~~~~--~gfDGIdIDwE~p~~~-~~ 128 (358)
T cd02875 55 KVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LEQI-SNPTYRTQWIQQ-KVELAKS--QFMDGINIDIEQPITK-GS 128 (358)
T ss_pred cceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HHHc-CCHHHHHHHHHH-HHHHHHH--hCCCeEEEcccCCCCC-Cc
Confidence 4788888854 6799999999999999865322 2223 344444556554 3334333 2344554433433110 01
Q ss_pred chhhhHHHHHHHHHHHHHhcCC
Q 010142 170 QFQSYVVPALLNLQQSLAKANL 191 (517)
Q Consensus 170 ~~~~~ll~am~nv~~aL~~~gl 191 (517)
.....+..-|+++|++|++.+.
T Consensus 129 ~d~~~~t~llkelr~~l~~~~~ 150 (358)
T cd02875 129 PEYYALTELVKETTKAFKKENP 150 (358)
T ss_pred chHHHHHHHHHHHHHHHhhcCC
Confidence 1134678889999999998764
No 34
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=48.89 E-value=21 Score=38.33 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=30.4
Q ss_pred HHHHHhhCCCCEEEEccCChHHHHHHHhCCCEEEE
Q 010142 83 VVDLLKDNKIQKVKLFDADPDALVALMRSGIQVMV 117 (517)
Q Consensus 83 vv~llk~~~i~~VRiY~~d~~vL~A~~~tgi~V~v 117 (517)
-+++||.+|+++||+. .+|.=+.++.+.||+|.=
T Consensus 330 gAqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~~ 363 (369)
T PRK12485 330 GAQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVVE 363 (369)
T ss_pred HHHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEEE
Confidence 3789999999999999 788888899999999973
No 35
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=46.47 E-value=31 Score=33.36 Aligned_cols=36 Identities=33% Similarity=0.570 Sum_probs=31.7
Q ss_pred HHHHhhCCCCEEEEccCChHHHHHHHhCCCEEEEec
Q 010142 84 VDLLKDNKIQKVKLFDADPDALVALMRSGIQVMVGI 119 (517)
Q Consensus 84 v~llk~~~i~~VRiY~~d~~vL~A~~~tgi~V~vGV 119 (517)
++.|+.+|++++|+.+.++.-+.++.+.||+|.=-+
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv~~~ 168 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVVERV 168 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEe
Confidence 789999999999999998878889999999997333
No 36
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=45.20 E-value=26 Score=37.59 Aligned_cols=35 Identities=20% Similarity=0.413 Sum_probs=31.2
Q ss_pred HHHHhhCCCCEEEEccCChHHHHHHHhCCCEEEEec
Q 010142 84 VDLLKDNKIQKVKLFDADPDALVALMRSGIQVMVGI 119 (517)
Q Consensus 84 v~llk~~~i~~VRiY~~d~~vL~A~~~tgi~V~vGV 119 (517)
+++|+.+|+++||+.. +|.=+.+|.+.||+|.==+
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~~~ 362 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTGYV 362 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEEEe
Confidence 7899999999999999 8988899999999997433
No 37
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=43.59 E-value=51 Score=29.86 Aligned_cols=40 Identities=30% Similarity=0.387 Sum_probs=37.2
Q ss_pred HHHHHHHhhCCCCEEEEccCChHHHHHHHhCCCEEEEecC
Q 010142 81 STVVDLLKDNKIQKVKLFDADPDALVALMRSGIQVMVGIP 120 (517)
Q Consensus 81 ~~vv~llk~~~i~~VRiY~~d~~vL~A~~~tgi~V~vGV~ 120 (517)
..++++|+++|++.|=+...-+..+.+|++.||+|+.+-.
T Consensus 55 ~~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 55 IRIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 3578999999999999999999999999999999999987
No 38
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=43.35 E-value=31 Score=36.58 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=31.0
Q ss_pred HHHHHhhCCCCEEEEccCC-hHHHHHHHhCCCEEE
Q 010142 83 VVDLLKDNKIQKVKLFDAD-PDALVALMRSGIQVM 116 (517)
Q Consensus 83 vv~llk~~~i~~VRiY~~d-~~vL~A~~~tgi~V~ 116 (517)
.+++|+.+|+++||+...+ |.-+.++.+.||+|.
T Consensus 300 gaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 300 GAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred HHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 4789999999999999999 888889999999986
No 39
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=42.68 E-value=35 Score=36.87 Aligned_cols=39 Identities=33% Similarity=0.520 Sum_probs=34.0
Q ss_pred HHHHHhhCCCCEEEEccCChHHHHHHHhCCCEEEEecCC
Q 010142 83 VVDLLKDNKIQKVKLFDADPDALVALMRSGIQVMVGIPN 121 (517)
Q Consensus 83 vv~llk~~~i~~VRiY~~d~~vL~A~~~tgi~V~vGV~n 121 (517)
.++.|+.+|+++||+...+|.=+.++.+.||+|.=-++.
T Consensus 319 gAqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vpl 357 (387)
T PRK09318 319 AFQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVPL 357 (387)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEecc
Confidence 378999999999999999998889999999999855543
No 40
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=42.40 E-value=17 Score=24.27 Aligned_cols=14 Identities=29% Similarity=0.437 Sum_probs=12.1
Q ss_pred cccchHHHhhcccc
Q 010142 21 LEKMPQANRRNRRI 34 (517)
Q Consensus 21 ~~~~~~~~~~~~~~ 34 (517)
+.++||+.+++|++
T Consensus 1 ~~~~PQi~~~~~~k 14 (32)
T smart00679 1 VSLLPQIIKNYRRK 14 (32)
T ss_pred CcchhHHHHHHHcC
Confidence 46899999999994
No 41
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=41.42 E-value=36 Score=37.52 Aligned_cols=38 Identities=21% Similarity=0.457 Sum_probs=33.2
Q ss_pred HHHHHhhCCCCEEEEccCChHHHHHHHhCCCEEEEecC
Q 010142 83 VVDLLKDNKIQKVKLFDADPDALVALMRSGIQVMVGIP 120 (517)
Q Consensus 83 vv~llk~~~i~~VRiY~~d~~vL~A~~~tgi~V~vGV~ 120 (517)
-+++|+.+|+++||+...+|.=+.++.+.||+|.=-++
T Consensus 372 gAqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 372 GAQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 37899999999999999999888999999999974443
No 42
>PRK08815 GTP cyclohydrolase; Provisional
Probab=41.40 E-value=37 Score=36.51 Aligned_cols=37 Identities=30% Similarity=0.438 Sum_probs=32.8
Q ss_pred HHHHhhCCCCEEEEccCChHHHHHHHhCCCEEEEecC
Q 010142 84 VDLLKDNKIQKVKLFDADPDALVALMRSGIQVMVGIP 120 (517)
Q Consensus 84 v~llk~~~i~~VRiY~~d~~vL~A~~~tgi~V~vGV~ 120 (517)
++.|+.+|+++||+...+|.=+.++.+.||+|.==++
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 7899999999999999999888899999999974444
No 43
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=40.79 E-value=38 Score=36.79 Aligned_cols=38 Identities=21% Similarity=0.456 Sum_probs=33.1
Q ss_pred HHHHHhhCCCCEEEEccCChHHHHHHHhCCCEEEEecC
Q 010142 83 VVDLLKDNKIQKVKLFDADPDALVALMRSGIQVMVGIP 120 (517)
Q Consensus 83 vv~llk~~~i~~VRiY~~d~~vL~A~~~tgi~V~vGV~ 120 (517)
.+++|+.+|+++||+...+|.=+.++.+.||+|.=-++
T Consensus 338 gaqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~~~v~ 375 (402)
T PRK09311 338 GAQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVTERVP 375 (402)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 47899999999999999999888899999999974343
No 44
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=40.76 E-value=59 Score=28.66 Aligned_cols=37 Identities=19% Similarity=0.305 Sum_probs=28.6
Q ss_pred HHHHHHHhhCCCCEEEEcc--CC---hHHHHHHHhCCCEEEE
Q 010142 81 STVVDLLKDNKIQKVKLFD--AD---PDALVALMRSGIQVMV 117 (517)
Q Consensus 81 ~~vv~llk~~~i~~VRiY~--~d---~~vL~A~~~tgi~V~v 117 (517)
+++.+.++++|++.|+++- .. ..+|++|+..|++|.-
T Consensus 50 ~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~ 91 (108)
T TIGR03632 50 EDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTS 91 (108)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEE
Confidence 4556778889999999983 33 3799999999998643
No 45
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=40.18 E-value=39 Score=38.11 Aligned_cols=38 Identities=24% Similarity=0.495 Sum_probs=33.8
Q ss_pred HHHHHhhCCCCEEEEccCChHHHHHHHhCCCEEEEecC
Q 010142 83 VVDLLKDNKIQKVKLFDADPDALVALMRSGIQVMVGIP 120 (517)
Q Consensus 83 vv~llk~~~i~~VRiY~~d~~vL~A~~~tgi~V~vGV~ 120 (517)
.+++|+.+||++||+...+|.=+.++.+.||+|.=-++
T Consensus 342 gAQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 342 GAQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 37899999999999999999999999999999985554
No 46
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=40.07 E-value=1.2e+02 Score=31.20 Aligned_cols=83 Identities=17% Similarity=0.107 Sum_probs=50.5
Q ss_pred hHHHHHHHhCCCEEEEecCCch--------hhhhhhchHHHHHHHHHHhhhhcccCCceEEEEeecCccccCCCCcchhh
Q 010142 102 PDALVALMRSGIQVMVGIPNEM--------LATLSSSTAASDLWVRQNVSRYLVKGGADIRYIAVGNEPFLTSYAGQFQS 173 (517)
Q Consensus 102 ~~vL~A~~~tgi~V~vGV~n~~--------~~~ia~~~~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~ 173 (517)
+.++++++..|++|++.|.+.. ...+.+++..-.. +.+++..++.+ -.+.+|-+-=|.+. .+...
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~-fi~~iv~~l~~--~~~DGidiDwE~~~----~~d~~ 120 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQR-LINNILALAKK--YGYDGVNIDFENVP----PEDRE 120 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHH-HHHHHHHHHHH--hCCCcEEEecccCC----HHHHH
Confidence 5788888888999999887532 2334444433233 33345444433 23445555556552 12235
Q ss_pred hHHHHHHHHHHHHHhcCC
Q 010142 174 YVVPALLNLQQSLAKANL 191 (517)
Q Consensus 174 ~ll~am~nv~~aL~~~gl 191 (517)
..+.-|+.+|++|++.|+
T Consensus 121 ~~~~fl~~lr~~l~~~~~ 138 (313)
T cd02874 121 AYTQFLRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHHHHHHhhhcCc
Confidence 678889999999987765
No 47
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=39.55 E-value=2.8e+02 Score=29.79 Aligned_cols=28 Identities=11% Similarity=0.209 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhCCCCceeecCcccccCCC
Q 010142 223 IMTQLVSFLNSNGSPFIVNIYPFLSLYGN 251 (517)
Q Consensus 223 ~~~~~ldfL~~~~sp~~vNiYPyf~~~~~ 251 (517)
.+...++|+...+ +-.+++|||--+-+.
T Consensus 306 d~~~tl~~i~~~~-~~~~~~~~~sp~pGT 333 (414)
T TIGR01579 306 DFQETLRMVKEIE-FSHLHIFPYSARPGT 333 (414)
T ss_pred HHHHHHHHHHhCC-CCEEEeeecCCCCCC
Confidence 4566788887654 456788887544433
No 48
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=39.40 E-value=2.6e+02 Score=27.00 Aligned_cols=128 Identities=9% Similarity=0.056 Sum_probs=60.2
Q ss_pred hHHHHHHHhhCCCCEEEEccCCh---------HHHHHHHhCCCEEEE--ecCCchhhhhhhchHHHHHHHHHHhhhhccc
Q 010142 80 PSTVVDLLKDNKIQKVKLFDADP---------DALVALMRSGIQVMV--GIPNEMLATLSSSTAASDLWVRQNVSRYLVK 148 (517)
Q Consensus 80 ~~~vv~llk~~~i~~VRiY~~d~---------~vL~A~~~tgi~V~v--GV~n~~~~~ia~~~~~A~~Wv~~~v~~y~p~ 148 (517)
-.++++.|.++|.++|=+..... ...++++..|+++.+ ..+.....+.......+.+|++++
T Consensus 97 g~~~~~~l~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------- 169 (265)
T cd01543 97 GRMAAEHFLERGFRHFAFYGLPGARWSDEREEAFRQLVAEAGYECSFFYRGLSTDAQSWEEEQEELAQWLQSL------- 169 (265)
T ss_pred HHHHHHHHHHCCCcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCccccccCccccccccHHHHHHHHHHHHhcC-------
Confidence 45567777778887776654331 134566778887621 111111111112223444444321
Q ss_pred CCceEEEEeecCccccCCCCcchhhhHHHHHHHHHHHHHhcCC--CCCcEEEcccccccccc-CCCCCcccchhhhHHHH
Q 010142 149 GGADIRYIAVGNEPFLTSYAGQFQSYVVPALLNLQQSLAKANL--AGYVKLVVPCNADAYES-SLPSQGAFRPELTQIMT 225 (517)
Q Consensus 149 ~~~~I~~I~VGNEvl~~~~~~~~~~~ll~am~nv~~aL~~~gl--~~~IkVsT~~~~~vl~~-~pPs~g~F~~~~~~~~~ 225 (517)
..+++|++.|+.+. .. +.++|++.|+ .++|.|.+-+....+.. ..|...+...+....-.
T Consensus 170 --~~~~ai~~~~d~~a-----------~g----~~~~l~~~g~~vp~di~vigfd~~~~~~~~~~~~ltti~~~~~~~g~ 232 (265)
T cd01543 170 --PKPVGIFACTDARA-----------RQ----LLEACRRAGIAVPEEVAVLGVDNDELICELSRPPLSSVEQNAERIGY 232 (265)
T ss_pred --CCCcEEEecChHHH-----------HH----HHHHHHHhCCCCCCceEEEeeCCchhhhccCCCCCceeecCHHHHHH
Confidence 23567888777662 11 2244555665 34566654443322223 22444455544433333
Q ss_pred HHHHHH
Q 010142 226 QLVSFL 231 (517)
Q Consensus 226 ~~ldfL 231 (517)
..++.|
T Consensus 233 ~a~~~l 238 (265)
T cd01543 233 EAAKLL 238 (265)
T ss_pred HHHHHH
Confidence 344433
No 49
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=39.14 E-value=2.1e+02 Score=34.87 Aligned_cols=97 Identities=18% Similarity=0.149 Sum_probs=56.9
Q ss_pred ceeEEecCCCC---CCCChHH---HHHHHhhCCCCEEEEccC--ChHHHHHHHhCCCEEEEecCCch--h------hhhh
Q 010142 65 AIGVNWGSVSS---HKLKPST---VVDLLKDNKIQKVKLFDA--DPDALVALMRSGIQVMVGIPNEM--L------ATLS 128 (517)
Q Consensus 65 ~~GvnYg~~~~---nlps~~~---vv~llk~~~i~~VRiY~~--d~~vL~A~~~tgi~V~vGV~n~~--~------~~ia 128 (517)
..|+|+-.... ...+++. .++++|+.|++.||+-.. ++..+.++-..||.|+--++.+. . ..+.
T Consensus 336 lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~ 415 (1021)
T PRK10340 336 LHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRIT 415 (1021)
T ss_pred EEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCccccccccccc
Confidence 35888643211 1234443 467889999999998632 35789999999999998653210 0 0111
Q ss_pred hch---HHHHHHHHHHhhhhcccCCceEEEEeecCccc
Q 010142 129 SST---AASDLWVRQNVSRYLVKGGADIRYIAVGNEPF 163 (517)
Q Consensus 129 ~~~---~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl 163 (517)
.++ .+..+-+++.|.+... .-.|..-++|||.-
T Consensus 416 ~~p~~~~~~~~~~~~mV~RdrN--HPSIi~WslGNE~~ 451 (1021)
T PRK10340 416 DDPQWEKVYVDRIVRHIHAQKN--HPSIIIWSLGNESG 451 (1021)
T ss_pred CCHHHHHHHHHHHHHHHHhCCC--CCEEEEEECccCcc
Confidence 121 1112234555555422 24688888999975
No 50
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=39.07 E-value=2.9e+02 Score=28.91 Aligned_cols=77 Identities=10% Similarity=0.132 Sum_probs=40.5
Q ss_pred CCCEEEEecCC--c---hhhhhhhchHHHHHHHHHHhhhhcccCCceEEEEeecCccccC-CCCcchhhhHHHHHHHHHH
Q 010142 111 SGIQVMVGIPN--E---MLATLSSSTAASDLWVRQNVSRYLVKGGADIRYIAVGNEPFLT-SYAGQFQSYVVPALLNLQQ 184 (517)
Q Consensus 111 tgi~V~vGV~n--~---~~~~ia~~~~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~-~~~~~~~~~ll~am~nv~~ 184 (517)
.+++|++.|.. . ....+.+++..-..++++ +..++.. -.+.+|-+==|-... +...+....++..|+.+|+
T Consensus 69 p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~~-iv~~l~~--~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~ 145 (362)
T cd02872 69 PNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIKS-AIAFLRK--YGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELRE 145 (362)
T ss_pred CCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHHH-HHHHHHH--cCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHH
Confidence 58999988743 1 234455555444444443 3344332 233444433232211 0011123567889999999
Q ss_pred HHHhcC
Q 010142 185 SLAKAN 190 (517)
Q Consensus 185 aL~~~g 190 (517)
+|++.+
T Consensus 146 ~l~~~~ 151 (362)
T cd02872 146 AFEPEA 151 (362)
T ss_pred HHHhhC
Confidence 999873
No 51
>PF04193 PQ-loop: PQ loop repeat
Probab=37.88 E-value=25 Score=27.02 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=12.9
Q ss_pred cccchHHHhhcccccc
Q 010142 21 LEKMPQANRRNRRISS 36 (517)
Q Consensus 21 ~~~~~~~~~~~~~~~~ 36 (517)
+.++||+.+++||.+.
T Consensus 15 ~~~lPQi~~~~k~ks~ 30 (61)
T PF04193_consen 15 ISFLPQIIKNYKRKST 30 (61)
T ss_pred HHHHhHHHHHHHcccc
Confidence 4679999999999443
No 52
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=35.17 E-value=3.2e+02 Score=24.11 Aligned_cols=122 Identities=17% Similarity=0.166 Sum_probs=61.4
Q ss_pred HHHHhhCCCCEEEEccCCh----------HHHHHHHhCCCEEEEecCCchhhhhhhchHHHHHHHHHHhhhhcccCCceE
Q 010142 84 VDLLKDNKIQKVKLFDADP----------DALVALMRSGIQVMVGIPNEMLATLSSSTAASDLWVRQNVSRYLVKGGADI 153 (517)
Q Consensus 84 v~llk~~~i~~VRiY~~d~----------~vL~A~~~tgi~V~vGV~n~~~~~ia~~~~~A~~Wv~~~v~~y~p~~~~~I 153 (517)
++.|.++|.++|-+..... ...++++..|++...-........... ......|+++. .|
T Consensus 1 ~~~L~~~G~r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~----~p------ 69 (160)
T PF13377_consen 1 VDYLIERGHRRIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSDDDSEDA-REAQLLWLRRL----RP------ 69 (160)
T ss_dssp HHHHHHTT-SSEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESSSHHHH-HHHHHHHHHTC----SS------
T ss_pred ChHHHHCCCCeEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCCcchhH-HHHHHHHHhcC----CC------
Confidence 4567788888888877432 256788889997644333322111111 11222355332 23
Q ss_pred EEEeecCccccCCCCcchhhhHHHHHHHHHHHHHhcCC--CCCcEEEccccccccccCCCCCcccchhhhHHHHHHHHHH
Q 010142 154 RYIAVGNEPFLTSYAGQFQSYVVPALLNLQQSLAKANL--AGYVKLVVPCNADAYESSLPSQGAFRPELTQIMTQLVSFL 231 (517)
Q Consensus 154 ~~I~VGNEvl~~~~~~~~~~~ll~am~nv~~aL~~~gl--~~~IkVsT~~~~~vl~~~pPs~g~F~~~~~~~~~~~ldfL 231 (517)
++|+++|+.+. .. +..+|.+.|+ .++|.|-+-..........|...+++.+...+-..+++.|
T Consensus 70 daii~~~~~~a--------~~-------~~~~l~~~g~~vP~di~vv~~~~~~~~~~~~p~it~i~~~~~~~g~~a~~~l 134 (160)
T PF13377_consen 70 DAIICSNDRLA--------LG-------VLRALRELGIRVPQDISVVSFDDSPLLEFFSPPITTIDQDPREMGREAVELL 134 (160)
T ss_dssp SEEEESSHHHH--------HH-------HHHHHHHTTSCTTTTSEEEEESSSGHHHCSSSTSEEEEE-HHHHHHHHHHHH
T ss_pred cEEEEcCHHHH--------HH-------HHHHHHHcCCcccccccEEEecCcHHHHHHcCCCceecCCHHHHHHHHHHHH
Confidence 28888888762 12 2345566776 3557666544333332222445556555543333444443
No 53
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=34.60 E-value=94 Score=34.87 Aligned_cols=73 Identities=21% Similarity=0.370 Sum_probs=48.0
Q ss_pred cCCCCCcEEEeecccCCCCCCC----------CCHHHHHHHHHHHHHHHhhCCCCCCCCCCCCccEEEeecccc-cccCC
Q 010142 293 LGYGQMPIVIGEVGWPTDGTIS----------ANLTAARTFNQGLINHVLSNKGTPLRPGAPSMDIYLFSLLDE-GAKSI 361 (517)
Q Consensus 293 ~g~~~~~vvVsETGWPS~G~~~----------as~~Na~~y~~~lv~~~~s~~GTP~rpg~~~~~~yiF~lFDE-~~K~~ 361 (517)
--|+|.+|.|+|-|-+...+.. .=.+..+.|++.+.+.+.. .|.- -.-+|+.+|.|- .|..
T Consensus 403 ~~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~-dgvn------v~GYf~WSLmDnfEw~~- 474 (524)
T KOG0626|consen 403 DKYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKE-DGVN------VKGYFVWSLLDNFEWLD- 474 (524)
T ss_pred hhcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHh-cCCc------eeeEEEeEcccchhhhc-
Confidence 3478999999999999865442 2244566677777666542 2221 125788998884 2542
Q ss_pred CCCCcccceEeeecC
Q 010142 362 LPGNFERHWGIFSFD 376 (517)
Q Consensus 362 ~~g~~E~~wGLf~~d 376 (517)
+..-.|||++.|
T Consensus 475 ---Gy~~RFGlyyVD 486 (524)
T KOG0626|consen 475 ---GYKVRFGLYYVD 486 (524)
T ss_pred ---CcccccccEEEe
Confidence 356789999864
No 54
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=34.21 E-value=85 Score=28.16 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=28.4
Q ss_pred HHHHHHHhhCCCCEEEEcc----------CC---hHHHHHHHhCCCEEE
Q 010142 81 STVVDLLKDNKIQKVKLFD----------AD---PDALVALMRSGIQVM 116 (517)
Q Consensus 81 ~~vv~llk~~~i~~VRiY~----------~d---~~vL~A~~~tgi~V~ 116 (517)
+++.+.++++|++.|+++- .. ..+|++|+.+||+|.
T Consensus 53 ~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~ 101 (114)
T TIGR03628 53 GRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 101 (114)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEE
Confidence 5567778889999988883 33 368999999999974
No 55
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=34.15 E-value=1.1e+02 Score=26.52 Aligned_cols=53 Identities=19% Similarity=0.167 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhhhcc-----cCCCceeEEecCCCCCCCChHHHHHHHhhCCCCEEEE
Q 010142 45 SIIVITTTLLLSFSLP-----MTESAIGVNWGSVSSHKLKPSTVVDLLKDNKIQKVKL 97 (517)
Q Consensus 45 ~~~~~~~~~l~~~~~~-----~~~~~~GvnYg~~~~nlps~~~vv~llk~~~i~~VRi 97 (517)
++.++..++++.+..+ .....+-|.-...+..+++.++|.+.|++.||..-++
T Consensus 8 Kyllil~vl~~~~lyALPnlyge~pAvqIs~~~~~~~~~~~~~v~~~L~~~~I~~k~i 65 (101)
T PF13721_consen 8 KYLLILVVLLLGALYALPNLYGEDPAVQISASSAGVQLPDAFQVEQALKAAGIAVKSI 65 (101)
T ss_pred HHHHHHHHHHHHHHHHhhhccCCCCcEEEecCCCCccCChHHHHHHHHHHCCCCcceE
Confidence 3444444444443322 3566778888777778888889999999999866555
No 56
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=33.00 E-value=1e+02 Score=34.06 Aligned_cols=80 Identities=11% Similarity=0.164 Sum_probs=51.8
Q ss_pred hHHHHHHHhhCCCCEEEEc---------c---CCh-------HHHHHHHhCCCEEEEecCCchhhhhhhchHHHHHHHHH
Q 010142 80 PSTVVDLLKDNKIQKVKLF---------D---ADP-------DALVALMRSGIQVMVGIPNEMLATLSSSTAASDLWVRQ 140 (517)
Q Consensus 80 ~~~vv~llk~~~i~~VRiY---------~---~d~-------~vL~A~~~tgi~V~vGV~n~~~~~ia~~~~~A~~Wv~~ 140 (517)
-+|.+++||++|++.-|.= + .|+ +++.+|...||+-+|.+.--+++..-. ..-.|+..
T Consensus 56 y~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~---~~GGW~n~ 132 (469)
T PRK13511 56 YPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALH---SNGDWLNR 132 (469)
T ss_pred hHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHH---HcCCCCCH
Confidence 4788999999998888752 1 132 589999999999999998765543211 11345333
Q ss_pred Hh----hhhc----ccCCceEEEEeecCccc
Q 010142 141 NV----SRYL----VKGGADIRYIAVGNEPF 163 (517)
Q Consensus 141 ~v----~~y~----p~~~~~I~~I~VGNEvl 163 (517)
.+ ..|. ...++ |+.-+-=||+.
T Consensus 133 ~~v~~F~~YA~~~~~~fgd-Vk~W~T~NEP~ 162 (469)
T PRK13511 133 ENIDHFVRYAEFCFEEFPE-VKYWTTFNEIG 162 (469)
T ss_pred HHHHHHHHHHHHHHHHhCC-CCEEEEccchh
Confidence 22 1221 12357 88888888875
No 57
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=32.60 E-value=3.3e+02 Score=29.42 Aligned_cols=105 Identities=14% Similarity=0.142 Sum_probs=60.0
Q ss_pred HHHHHHHhhCCCCEEEEccC----------Ch------------HHHHHHHhCCCEEEEecCCch-------h----hhh
Q 010142 81 STVVDLLKDNKIQKVKLFDA----------DP------------DALVALMRSGIQVMVGIPNEM-------L----ATL 127 (517)
Q Consensus 81 ~~vv~llk~~~i~~VRiY~~----------d~------------~vL~A~~~tgi~V~vGV~n~~-------~----~~i 127 (517)
++....+|+.||+.|||.-. +| ++++.+.+-||+|++.+-... . ..+
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 56778899999999999733 32 356777889999999854421 1 011
Q ss_pred hhc----hHHHHHHHHHHhhhhcccCCceEEEEeecCccccCCCCcchhhhH-HHHHHHHHHHHHhc
Q 010142 128 SSS----TAASDLWVRQNVSRYLVKGGADIRYIAVGNEPFLTSYAGQFQSYV-VPALLNLQQSLAKA 189 (517)
Q Consensus 128 a~~----~~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~l-l~am~nv~~aL~~~ 189 (517)
... ......| ..|...+.. ...|.+|-+=||+..-..+ +.+..- -+|..-|++.+.+.
T Consensus 156 ~~~~~~~~~~~~~w--~~ia~~f~~-~~~VIg~~~~NEP~~~~~~-~~w~~~~~~A~~~v~~~i~~~ 218 (407)
T COG2730 156 KEENENVEATIDIW--KFIANRFKN-YDTVIGFELINEPNGIVTS-ETWNGGDDEAYDVVRNAILSN 218 (407)
T ss_pred cccchhHHHHHHHH--HHHHHhccC-CCceeeeeeecCCcccCCc-cccccchHHHHHHHHhhhhhc
Confidence 110 1112222 122222222 3678888899999831111 223333 47887777665544
No 58
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=32.02 E-value=4.4e+02 Score=24.84 Aligned_cols=100 Identities=15% Similarity=0.008 Sum_probs=53.7
Q ss_pred HHHHHHhhCCCCEEEE----------ccCC--------------hHHHHHHHhCCCEEEEecCCchhhhhhhchHHH---
Q 010142 82 TVVDLLKDNKIQKVKL----------FDAD--------------PDALVALMRSGIQVMVGIPNEMLATLSSSTAAS--- 134 (517)
Q Consensus 82 ~vv~llk~~~i~~VRi----------Y~~d--------------~~vL~A~~~tgi~V~vGV~n~~~~~ia~~~~~A--- 134 (517)
+.++.||+.||+.|=+ |..+ ..+|+++...||+|++|+..+..---..+....
T Consensus 24 ~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~~~w~~~~~~~~~~~ 103 (166)
T PF14488_consen 24 EEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDPDYWDQGDLDWEAER 103 (166)
T ss_pred HHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCchhhhccCHHHHHHH
Confidence 4566788888877722 2111 157899999999999999965210001111110
Q ss_pred HHHHHHHhh-hhcccCCceEEEEeecCccccCCCCcchhhhHHHHHHHHHHHHHhc
Q 010142 135 DLWVRQNVS-RYLVKGGADIRYIAVGNEPFLTSYAGQFQSYVVPALLNLQQSLAKA 189 (517)
Q Consensus 135 ~~Wv~~~v~-~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~ll~am~nv~~aL~~~ 189 (517)
..-|.+.+. .|... ..+.+--+-.|+=... ....++.+.+.+.|+..
T Consensus 104 ~~~v~~el~~~yg~h--~sf~GWYip~E~~~~~------~~~~~~~~~l~~~lk~~ 151 (166)
T PF14488_consen 104 NKQVADELWQRYGHH--PSFYGWYIPYEIDDYN------WNAPERFALLGKYLKQI 151 (166)
T ss_pred HHHHHHHHHHHHcCC--CCCceEEEecccCCcc------cchHHHHHHHHHHHHHh
Confidence 011333332 34321 4567777777865321 12355556666666544
No 59
>PRK07198 hypothetical protein; Validated
Probab=30.77 E-value=45 Score=36.11 Aligned_cols=38 Identities=26% Similarity=0.340 Sum_probs=33.5
Q ss_pred HHHHHhhCCCCEE-EEccCChHHHHHHHhCCCEEEEecC
Q 010142 83 VVDLLKDNKIQKV-KLFDADPDALVALMRSGIQVMVGIP 120 (517)
Q Consensus 83 vv~llk~~~i~~V-RiY~~d~~vL~A~~~tgi~V~vGV~ 120 (517)
-++.|+.+||++| |+.+.++.-+.++.+.||+|.==|+
T Consensus 337 GAQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVp 375 (418)
T PRK07198 337 MPDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVP 375 (418)
T ss_pred HHHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEec
Confidence 3679999999999 9999999888999999999975554
No 60
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=30.48 E-value=1.6e+02 Score=32.61 Aligned_cols=82 Identities=13% Similarity=0.210 Sum_probs=50.5
Q ss_pred hHHHHHHHhhCCCCEEEE-------cc------CCh-------HHHHHHHhCCCEEEEecCCchhhhhhhchHHHHHHHH
Q 010142 80 PSTVVDLLKDNKIQKVKL-------FD------ADP-------DALVALMRSGIQVMVGIPNEMLATLSSSTAASDLWVR 139 (517)
Q Consensus 80 ~~~vv~llk~~~i~~VRi-------Y~------~d~-------~vL~A~~~tgi~V~vGV~n~~~~~ia~~~~~A~~Wv~ 139 (517)
-++.+++||++|++.-|. += .|+ +++..|...||+-+|.+.--+++-.-. ...-.|..
T Consensus 69 y~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~--~~yGGW~n 146 (476)
T PRK09589 69 YKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLV--TEYGGWRN 146 (476)
T ss_pred hHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHH--HhcCCcCC
Confidence 367899999998887775 31 232 588999999999999998765543111 11123433
Q ss_pred HHh----hhhc----ccCCceEEEEeecCccc
Q 010142 140 QNV----SRYL----VKGGADIRYIAVGNEPF 163 (517)
Q Consensus 140 ~~v----~~y~----p~~~~~I~~I~VGNEvl 163 (517)
..+ ..|. ...++.|+.-+-=||+.
T Consensus 147 ~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEp~ 178 (476)
T PRK09589 147 RKLIDFFVRFAEVVFTRYKDKVKYWMTFNEIN 178 (476)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCEEEEecchh
Confidence 222 2221 11247787777778864
No 61
>PLN02849 beta-glucosidase
Probab=30.40 E-value=1.1e+02 Score=34.20 Aligned_cols=81 Identities=15% Similarity=0.289 Sum_probs=49.7
Q ss_pred HHHHHHHhhCCCCEEEE-------cc-----CCh-------HHHHHHHhCCCEEEEecCCchhhhhhhchHHHHHHHHHH
Q 010142 81 STVVDLLKDNKIQKVKL-------FD-----ADP-------DALVALMRSGIQVMVGIPNEMLATLSSSTAASDLWVRQN 141 (517)
Q Consensus 81 ~~vv~llk~~~i~~VRi-------Y~-----~d~-------~vL~A~~~tgi~V~vGV~n~~~~~ia~~~~~A~~Wv~~~ 141 (517)
+|.+++||++|++.-|. +- .|+ +++.++...||+-+|.+.--+++-.-.+ ..-.|....
T Consensus 82 ~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~--~yGGW~nr~ 159 (503)
T PLN02849 82 KEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYLED--DYGGWINRR 159 (503)
T ss_pred HHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHHHH--hcCCcCCch
Confidence 57799999999888775 31 132 5899999999999999986555432111 112232211
Q ss_pred ----hhhhc----ccCCceEEEEeecCccc
Q 010142 142 ----VSRYL----VKGGADIRYIAVGNEPF 163 (517)
Q Consensus 142 ----v~~y~----p~~~~~I~~I~VGNEvl 163 (517)
...|. ...++.|+.-+-=||+.
T Consensus 160 ~v~~F~~YA~~~f~~fgDrVk~WiT~NEP~ 189 (503)
T PLN02849 160 IIKDFTAYADVCFREFGNHVKFWTTINEAN 189 (503)
T ss_pred HHHHHHHHHHHHHHHhcCcCCEEEEecchh
Confidence 11111 11247788877778865
No 62
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=30.02 E-value=93 Score=30.46 Aligned_cols=39 Identities=31% Similarity=0.511 Sum_probs=35.4
Q ss_pred HHHHhhCCCCEEEEccCChHHHHHHHhCCCEEEEecCCc
Q 010142 84 VDLLKDNKIQKVKLFDADPDALVALMRSGIQVMVGIPNE 122 (517)
Q Consensus 84 v~llk~~~i~~VRiY~~d~~vL~A~~~tgi~V~vGV~n~ 122 (517)
+++|+.+||++||+-..+|.=..++.+.||+|.=-++..
T Consensus 133 AqIL~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~~ 171 (193)
T COG0807 133 AQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPLI 171 (193)
T ss_pred HHHHHHcCCcEEEEecCChHHHHHHHhCCceEEEEeecC
Confidence 678999999999999999988889999999999888875
No 63
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=29.76 E-value=1.1e+02 Score=28.21 Aligned_cols=36 Identities=25% Similarity=0.396 Sum_probs=28.4
Q ss_pred HHHHHHHhhCCCCEEEEc--c--------CCh---HHHHHHHhCCCEEE
Q 010142 81 STVVDLLKDNKIQKVKLF--D--------ADP---DALVALMRSGIQVM 116 (517)
Q Consensus 81 ~~vv~llk~~~i~~VRiY--~--------~d~---~vL~A~~~tgi~V~ 116 (517)
+++++.++++|++.|+++ . ..+ .+|++|+..||+|.
T Consensus 60 e~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~ 108 (132)
T PRK09607 60 EKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 108 (132)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEE
Confidence 456777888999999888 3 332 69999999999974
No 64
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=29.64 E-value=86 Score=27.63 Aligned_cols=37 Identities=24% Similarity=0.353 Sum_probs=27.6
Q ss_pred HHHHHHHhhCCCCEEEEc--cCC---hHHHHHHHhCCCEEEE
Q 010142 81 STVVDLLKDNKIQKVKLF--DAD---PDALVALMRSGIQVMV 117 (517)
Q Consensus 81 ~~vv~llk~~~i~~VRiY--~~d---~~vL~A~~~tgi~V~v 117 (517)
+.+.+.++++|++.|+++ +.. ..+|++|+.+|++|.-
T Consensus 50 ~~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~ 91 (110)
T PF00411_consen 50 EKIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVS 91 (110)
T ss_dssp HHHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEE
Confidence 345567778899999888 333 3689999999998643
No 65
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=28.97 E-value=1.3e+02 Score=27.37 Aligned_cols=44 Identities=23% Similarity=0.347 Sum_probs=34.6
Q ss_pred ChHHHHHHHhhCCCCEEEEccCC-----------------------hHHHHHHHhCCCEEEEecCCc
Q 010142 79 KPSTVVDLLKDNKIQKVKLFDAD-----------------------PDALVALMRSGIQVMVGIPNE 122 (517)
Q Consensus 79 s~~~vv~llk~~~i~~VRiY~~d-----------------------~~vL~A~~~tgi~V~vGV~n~ 122 (517)
.|++.++.||+.+++.|-+|.-+ .++++|+...||+|++=+.-.
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeee
Confidence 36888999999999999887531 257899999999998877543
No 66
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=28.74 E-value=95 Score=32.23 Aligned_cols=94 Identities=19% Similarity=0.185 Sum_probs=55.8
Q ss_pred ceEEEEeecCcccc-CCCC---cch--hhhHHHHHHHHHHHHHhcCCCCCcEEEccccccccccCCCCCc----ccchhh
Q 010142 151 ADIRYIAVGNEPFL-TSYA---GQF--QSYVVPALLNLQQSLAKANLAGYVKLVVPCNADAYESSLPSQG----AFRPEL 220 (517)
Q Consensus 151 ~~I~~I~VGNEvl~-~~~~---~~~--~~~ll~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~~pPs~g----~F~~~~ 220 (517)
..|..++||+|-.. +..+ +.+ +..|...+.+||+.| +..+|||.+..++.+..+-|..| .|+=|
T Consensus 18 ggVdaF~IGSEl~gLT~iR~~~~~fPaV~~l~~LAa~VR~il-----G~~~kitYAADWsEY~~~~p~dg~gd~~f~LD- 91 (299)
T PF13547_consen 18 GGVDAFCIGSELRGLTRIRDGAGSFPAVEALRALAADVRAIL-----GPGTKITYAADWSEYFGYQPADGSGDVYFHLD- 91 (299)
T ss_pred CCCcEEEEchhhhhheeecCCCCCCcHHHHHHHHHHHHHHHh-----CCCceEEEeccCHHhcCcCCCCCCCcccccCc-
Confidence 56899999999652 1112 122 356777777777766 34689999999999887555555 34322
Q ss_pred hHHHHHHHHHHhhCCCCceeecCcccccCCCCCCCcc
Q 010142 221 TQIMTQLVSFLNSNGSPFIVNIYPFLSLYGNSDFPED 257 (517)
Q Consensus 221 ~~~~~~~ldfL~~~~sp~~vNiYPyf~~~~~~~i~l~ 257 (517)
++- -...-|+++|+.|.=++-..++...+|
T Consensus 92 -----pLW--a~~~IDfIGID~Y~PLSDwrd~~~h~d 121 (299)
T PF13547_consen 92 -----PLW--ADPNIDFIGIDNYFPLSDWRDGDDHLD 121 (299)
T ss_pred -----ccc--cCCcCCEEEeecccccCCCCCCccccc
Confidence 221 112345668888765554444433333
No 67
>CHL00041 rps11 ribosomal protein S11
Probab=28.64 E-value=1.2e+02 Score=27.07 Aligned_cols=36 Identities=19% Similarity=0.369 Sum_probs=27.6
Q ss_pred HHHHHHHhhCCCCEEEEcc--CC---hHHHHHHHhCCCEEE
Q 010142 81 STVVDLLKDNKIQKVKLFD--AD---PDALVALMRSGIQVM 116 (517)
Q Consensus 81 ~~vv~llk~~~i~~VRiY~--~d---~~vL~A~~~tgi~V~ 116 (517)
+++.+.++++|++.|+++= .. ..++++|+..|++|.
T Consensus 63 ~~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~ 103 (116)
T CHL00041 63 ENAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLS 103 (116)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 4456677888999999883 32 368999999999874
No 68
>PRK09989 hypothetical protein; Provisional
Probab=27.95 E-value=5.9e+02 Score=25.05 Aligned_cols=51 Identities=8% Similarity=0.081 Sum_probs=39.2
Q ss_pred eeEEecCCCCCCCChHHHHHHHhhCCCCEEEEc---cCCh-HHHHHHHhCCCEEEE
Q 010142 66 IGVNWGSVSSHKLKPSTVVDLLKDNKIQKVKLF---DADP-DALVALMRSGIQVMV 117 (517)
Q Consensus 66 ~GvnYg~~~~nlps~~~vv~llk~~~i~~VRiY---~~d~-~vL~A~~~tgi~V~v 117 (517)
..+|...+-.++ +-.+.++.+++.||+.|-+. +.+. ++.+.++++||+|..
T Consensus 4 ~~~~~~~~~~~~-~l~~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 4 FAANLSMMFTEV-PFIERFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred eeeehhhhhcCC-CHHHHHHHHHHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEE
Confidence 467777766565 46788999999999999984 3343 577788899999886
No 69
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=27.80 E-value=5.2e+02 Score=28.01 Aligned_cols=80 Identities=5% Similarity=-0.067 Sum_probs=39.8
Q ss_pred EEEEeecCccccC----C-CCcchhhhHHHHHHHHHHHHHhcCCCCCcEEEccccccccccCCCCCcccchhhhHHHHHH
Q 010142 153 IRYIAVGNEPFLT----S-YAGQFQSYVVPALLNLQQSLAKANLAGYVKLVVPCNADAYESSLPSQGAFRPELTQIMTQL 227 (517)
Q Consensus 153 I~~I~VGNEvl~~----~-~~~~~~~~ll~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~~pPs~g~F~~~~~~~~~~~ 227 (517)
..++.+|=|-... . .++........+++.+|+.+ ..+.|++. .+-.+| |. -.+.+...
T Consensus 250 ~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~------~~i~i~~d----~IvGfP---gE----T~edf~~t 312 (434)
T PRK14330 250 AKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKV------PDASISSD----IIVGFP---TE----TEEDFMET 312 (434)
T ss_pred cCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhC------CCCEEEEE----EEEECC---CC----CHHHHHHH
Confidence 4567776555432 1 11112345556666666541 12556543 222232 11 12345677
Q ss_pred HHHHhhCCCCceeecCcccccCC
Q 010142 228 VSFLNSNGSPFIVNIYPFLSLYG 250 (517)
Q Consensus 228 ldfL~~~~sp~~vNiYPyf~~~~ 250 (517)
++|+...+ +-.+++++|-.+-+
T Consensus 313 l~fi~~~~-~~~~~~~~~sp~pG 334 (434)
T PRK14330 313 VDLVEKAQ-FERLNLAIYSPREG 334 (434)
T ss_pred HHHHHhcC-CCEEeeeeccCCCC
Confidence 88887654 34567777644433
No 70
>COG4519 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.59 E-value=43 Score=28.28 Aligned_cols=25 Identities=28% Similarity=0.686 Sum_probs=19.2
Q ss_pred CCCCcEEEeecccCCCCCCCCCHHHHHHHHHHHHHHH
Q 010142 295 YGQMPIVIGEVGWPTDGTISANLTAARTFNQGLINHV 331 (517)
Q Consensus 295 ~~~~~vvVsETGWPS~G~~~as~~Na~~y~~~lv~~~ 331 (517)
-.++|=++.-|||| |+-.|+.++.+
T Consensus 22 ~~nVP~lm~~TGwP------------RRT~QDvikAl 46 (95)
T COG4519 22 TANVPELMAATGWP------------RRTAQDVIKAL 46 (95)
T ss_pred cCChHHHHHHcCCc------------hhHHHHHHHhC
Confidence 45788899999999 55567777765
No 71
>PRK05309 30S ribosomal protein S11; Validated
Probab=27.37 E-value=1.3e+02 Score=27.40 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=27.9
Q ss_pred HHHHHHHhhCCCCEEEEcc--CC---hHHHHHHHhCCCEEE
Q 010142 81 STVVDLLKDNKIQKVKLFD--AD---PDALVALMRSGIQVM 116 (517)
Q Consensus 81 ~~vv~llk~~~i~~VRiY~--~d---~~vL~A~~~tgi~V~ 116 (517)
+.+.+.++++|++.|+++- .. ..+|++|...|++|.
T Consensus 67 ~~~~~~~~~~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~ 107 (128)
T PRK05309 67 EDAAKKAKEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVT 107 (128)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 4456677889999999993 33 368999999999864
No 72
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=26.72 E-value=87 Score=33.34 Aligned_cols=56 Identities=20% Similarity=0.554 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCCCCCcE-EEcccccccccc---CCCCCcccchhh---h--HHHHHHHHHHhhCCCCce
Q 010142 179 LLNLQQSLAKANLAGYVK-LVVPCNADAYES---SLPSQGAFRPEL---T--QIMTQLVSFLNSNGSPFI 239 (517)
Q Consensus 179 m~nv~~aL~~~gl~~~Ik-VsT~~~~~vl~~---~pPs~g~F~~~~---~--~~~~~~ldfL~~~~sp~~ 239 (517)
+|.|+++|+..|+. || |-||+. ++.. --|.-|.|.... . ....|+-+|+. .+.|||
T Consensus 14 ~~si~nal~hlg~~--i~~v~~P~D--I~~a~rLIfPGVGnfg~~~D~L~~~Gf~eplr~Yie-sgkPfm 78 (541)
T KOG0623|consen 14 VRSIRNALRHLGFS--IKDVQTPGD--ILNADRLIFPGVGNFGPAMDVLNRTGFAEPLRKYIE-SGKPFM 78 (541)
T ss_pred HHHHHHHHHhcCce--eeeccCchh--hccCceEeecCcccchHHHHHHhhhhhHHHHHHHHh-cCCCeE
Confidence 67889999999995 55 777754 3332 236778775332 1 24567777764 455554
No 73
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=25.07 E-value=79 Score=27.92 Aligned_cols=26 Identities=23% Similarity=0.416 Sum_probs=20.3
Q ss_pred ChHHHHHHHhhCC---CCEEEEccCChHH
Q 010142 79 KPSTVVDLLKDNK---IQKVKLFDADPDA 104 (517)
Q Consensus 79 s~~~vv~llk~~~---i~~VRiY~~d~~v 104 (517)
.|+++.++|+.+. =.++||||.|..+
T Consensus 2 ~pe~a~plLrrL~~Pt~~RARlyd~dG~L 30 (112)
T PF13756_consen 2 NPERARPLLRRLISPTRTRARLYDPDGNL 30 (112)
T ss_pred CHHHHHHHHHHhCCCCCceEEEECCCCCE
Confidence 4788888888763 4899999999643
No 74
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=25.01 E-value=8e+02 Score=25.57 Aligned_cols=112 Identities=15% Similarity=0.137 Sum_probs=66.9
Q ss_pred HHHHHHHhhCCCCEEEEccC-----------C-------hHHHHHHHhCCCEEEEecCCc--------hhhh--------
Q 010142 81 STVVDLLKDNKIQKVKLFDA-----------D-------PDALVALMRSGIQVMVGIPNE--------MLAT-------- 126 (517)
Q Consensus 81 ~~vv~llk~~~i~~VRiY~~-----------d-------~~vL~A~~~tgi~V~vGV~n~--------~~~~-------- 126 (517)
.++++.+|..|++.|-+|-. | ...|+.+++.|+.|+|=...- .++.
T Consensus 27 ~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~~~~~ 106 (319)
T PF01301_consen 27 RDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLRKPDI 106 (319)
T ss_dssp HHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGGSTTS
T ss_pred HHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhccccc
Confidence 46788889999999999932 1 146888899999998743211 0110
Q ss_pred -h-hhc---hHHHHHHHHH---HhhhhcccCCceEEEEeecCccccCCCCcchhhhHHHHHHHHHHHHHhcCCCCCcEEE
Q 010142 127 -L-SSS---TAASDLWVRQ---NVSRYLVKGGADIRYIAVGNEPFLTSYAGQFQSYVVPALLNLQQSLAKANLAGYVKLV 198 (517)
Q Consensus 127 -i-a~~---~~~A~~Wv~~---~v~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~ll~am~nv~~aL~~~gl~~~IkVs 198 (517)
+ ..+ .++...|.+. .+.++.-..+..|..+=|=||.-.. ..-..+|+.++++.++.+....+..+
T Consensus 107 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg~~-------~~~~~Y~~~l~~~~~~~g~~~~~~~t 179 (319)
T PF01301_consen 107 RLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYGSY-------GTDRAYMEALKDAYRDWGIDPVLLYT 179 (319)
T ss_dssp -SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGGCT-------SS-HHHHHHHHHHHHHTT-SSSBEEE
T ss_pred cccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhCCC-------cccHhHHHHHHHHHHHhhCccceeec
Confidence 0 011 1455667554 3445443334679999999997621 12367888999999999876434343
Q ss_pred c
Q 010142 199 V 199 (517)
Q Consensus 199 T 199 (517)
+
T Consensus 180 ~ 180 (319)
T PF01301_consen 180 T 180 (319)
T ss_dssp E
T ss_pred c
Confidence 3
No 75
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=25.01 E-value=2.6e+02 Score=26.27 Aligned_cols=85 Identities=19% Similarity=0.224 Sum_probs=46.4
Q ss_pred HHHHHHHhC--CCEEEEecCCchhhh---hhhchHHHHHHHHHHhhhhcccCCceEEEEeecCccccCCCCcchhhhHHH
Q 010142 103 DALVALMRS--GIQVMVGIPNEMLAT---LSSSTAASDLWVRQNVSRYLVKGGADIRYIAVGNEPFLTSYAGQFQSYVVP 177 (517)
Q Consensus 103 ~vL~A~~~t--gi~V~vGV~n~~~~~---ia~~~~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~ll~ 177 (517)
..++.++.. |++|++.|....... +.++++..++.++ ++..+... -++.+|-+==|-.... .......++.
T Consensus 53 ~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~-~~~~~v~~--~~~DGidiD~E~~~~~-~~~~~~~~~~ 128 (210)
T cd00598 53 GALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFAN-SLVSFLKT--YGFDGVDIDWEYPGAA-DNSDRENFIT 128 (210)
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHH-HHHHHHHH--cCCCceEEeeeCCCCc-CccHHHHHHH
Confidence 345666654 999999998643222 2344444444333 34444433 2344554433433211 1012357888
Q ss_pred HHHHHHHHHHhcCC
Q 010142 178 ALLNLQQSLAKANL 191 (517)
Q Consensus 178 am~nv~~aL~~~gl 191 (517)
.|+.+|++|.+.++
T Consensus 129 ll~~lr~~l~~~~~ 142 (210)
T cd00598 129 LLRELRSALGAANY 142 (210)
T ss_pred HHHHHHHHhcccCc
Confidence 99999999977654
No 76
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.75 E-value=1.7e+02 Score=27.53 Aligned_cols=89 Identities=16% Similarity=0.150 Sum_probs=47.8
Q ss_pred EEc-cCC-----hHHHHHHHhCCCEEEEecCCchhh----------hhhhchHHHHHHHHHHhhhhcccCCceEEE--Ee
Q 010142 96 KLF-DAD-----PDALVALMRSGIQVMVGIPNEMLA----------TLSSSTAASDLWVRQNVSRYLVKGGADIRY--IA 157 (517)
Q Consensus 96 RiY-~~d-----~~vL~A~~~tgi~V~vGV~n~~~~----------~ia~~~~~A~~Wv~~~v~~y~p~~~~~I~~--I~ 157 (517)
+|| |+| ..+.+++..+|++|++=- |..+. -+.+...+|+.|+.++..++ +.|.+ |-
T Consensus 3 ~I~VDADACPVk~~i~r~A~r~~~~v~~Va-n~~~~~~~~~~i~~v~V~~g~DaaD~~Iv~~a~~g-----DlVVT~Di~ 76 (150)
T COG1671 3 TIWVDADACPVKDEIYRVAERMGLKVTFVA-NFPHRVPPSPEIRTVVVDAGFDAADDWIVNLAEKG-----DLVVTADIP 76 (150)
T ss_pred eEEEeCCCCchHHHHHHHHHHhCCeEEEEe-CCCccCCCCCceeEEEecCCcchHHHHHHHhCCCC-----CEEEECchH
Confidence 455 566 256677777888776522 22111 13344578899988766554 43332 22
Q ss_pred ecCccccCC-----CCcc-----hhhhHHHHHHHHHHHHHhcCC
Q 010142 158 VGNEPFLTS-----YAGQ-----FQSYVVPALLNLQQSLAKANL 191 (517)
Q Consensus 158 VGNEvl~~~-----~~~~-----~~~~ll~am~nv~~aL~~~gl 191 (517)
.-.+.|..+ .++. ... ..-+||++..-|++.|.
T Consensus 77 LA~~ll~kg~~v~~prGr~y~~~nI~-~~L~~R~~~~~lR~~G~ 119 (150)
T COG1671 77 LASLLLDKGAAVLNPRGRLYTEENIG-ERLAMRDFMAKLRRQGK 119 (150)
T ss_pred HHHHHHhcCCEEECCCCcccCHhHHH-HHHHHHHHHHHHHHhcc
Confidence 222222111 1222 122 34479999999998885
No 77
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.14 E-value=6.6e+02 Score=27.71 Aligned_cols=56 Identities=13% Similarity=0.223 Sum_probs=32.7
Q ss_pred ceeEEecCCCCCCCC----hHHHHHHHhh-CCCCEEEEccCCh-----HHHHHHHhC-CCEEEEecC
Q 010142 65 AIGVNWGSVSSHKLK----PSTVVDLLKD-NKIQKVKLFDADP-----DALVALMRS-GIQVMVGIP 120 (517)
Q Consensus 65 ~~GvnYg~~~~nlps----~~~vv~llk~-~~i~~VRiY~~d~-----~vL~A~~~t-gi~V~vGV~ 120 (517)
.+|.|=+.||-+++. -.+.++.|.+ .|+.+||+=..+| +++++++++ .+-=.+-+|
T Consensus 195 L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~I~G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlP 261 (437)
T COG0621 195 LTGQDVNAYGKDLGGGKPNLADLLRELSKIPGIERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLP 261 (437)
T ss_pred EEEEehhhccccCCCCccCHHHHHHHHhcCCCceEEEEecCCchhcCHHHHHHHhcCCcccccccCc
Confidence 357777777777653 2333333322 4678888876665 577777764 444444454
No 78
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=23.97 E-value=3.9e+02 Score=29.24 Aligned_cols=50 Identities=18% Similarity=0.406 Sum_probs=31.8
Q ss_pred HHHHHHHhhCCCCEEEEc--cCCh----------------HHHHHHHhCCC-----EEEEecCCchhhhhhhc
Q 010142 81 STVVDLLKDNKIQKVKLF--DADP----------------DALVALMRSGI-----QVMVGIPNEMLATLSSS 130 (517)
Q Consensus 81 ~~vv~llk~~~i~~VRiY--~~d~----------------~vL~A~~~tgi-----~V~vGV~n~~~~~ia~~ 130 (517)
++.+++|++.|+++|-+= +.++ +.++.++..|+ .+|.|+|.+..+++...
T Consensus 152 ~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt~e~~~~t 224 (453)
T PRK13347 152 AEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLPHQTVESFRET 224 (453)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCCHHHHHHH
Confidence 577888999898877552 2221 23445555565 47889998766655443
No 79
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=22.27 E-value=2.5e+02 Score=22.86 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=35.4
Q ss_pred hHHHHHHHhhCCCCEEEEccCChHHHHHHHhCCCEEEEec
Q 010142 80 PSTVVDLLKDNKIQKVKLFDADPDALVALMRSGIQVMVGI 119 (517)
Q Consensus 80 ~~~vv~llk~~~i~~VRiY~~d~~vL~A~~~tgi~V~vGV 119 (517)
....+++|...+++.|=.-..-+...+.|...||+|+.+.
T Consensus 42 ~~~~~~~l~~~~v~~li~~~iG~~~~~~L~~~gI~v~~~~ 81 (94)
T PF02579_consen 42 GDKIAKFLAEEGVDVLICGGIGEGAFRALKEAGIKVYQGA 81 (94)
T ss_dssp STHHHHHHHHTTESEEEESCSCHHHHHHHHHTTSEEEEST
T ss_pred chhHHHHHHHcCCCEEEEeCCCHHHHHHHHHCCCEEEEcC
Confidence 4667888888999999888888999999999999999993
No 80
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=22.18 E-value=1.8e+02 Score=32.08 Aligned_cols=47 Identities=6% Similarity=0.172 Sum_probs=35.2
Q ss_pred hHHHHHHHhhCCCCEEEE-------cc-----CCh-------HHHHHHHhCCCEEEEecCCchhhh
Q 010142 80 PSTVVDLLKDNKIQKVKL-------FD-----ADP-------DALVALMRSGIQVMVGIPNEMLAT 126 (517)
Q Consensus 80 ~~~vv~llk~~~i~~VRi-------Y~-----~d~-------~vL~A~~~tgi~V~vGV~n~~~~~ 126 (517)
-++.+++||++|++.-|+ +- .|+ +++.+|...||+-+|.+.--+++-
T Consensus 55 y~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 120 (467)
T TIGR01233 55 YPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPE 120 (467)
T ss_pred HHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcH
Confidence 467889999998877765 21 122 588999999999999998765543
No 81
>PF14983 DUF4513: Domain of unknown function (DUF4513)
Probab=22.18 E-value=58 Score=29.25 Aligned_cols=68 Identities=16% Similarity=0.208 Sum_probs=47.4
Q ss_pred ccccccCCCCCCccc-cccccccchHHHhhcccccccccccchhHHHHHHHHHHHhhhcccCCCceeEEecCCCCC
Q 010142 2 NKVASNCSAESPFLF-FDFELEKMPQANRRNRRISSTSTSASATSIIVITTTLLLSFSLPMTESAIGVNWGSVSSH 76 (517)
Q Consensus 2 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~GvnYg~~~~n 76 (517)
-|++.|||+|+++-- .-++.--+|+|-..+.-|+++-.-.=- --|.+.-.+|=-+- ..||=.|+..+.
T Consensus 10 pkl~~~~s~e~~~k~~~k~~~iHlPrFS~~~~~IPrrYVmpWK-~dMkfR~~nlK~ae------~~GIy~GPleeS 78 (132)
T PF14983_consen 10 PKLTNNCSDENSYKPANKYEEIHLPRFSLKQGMIPRRYVMPWK-EDMKFRNVNLKNAE------LCGIYTGPLEES 78 (132)
T ss_pred cccccccccccccCCcccccccccchhhhhcCCCcccccCchh-hhhhhhHHhhhhhh------hcccccCCchhh
Confidence 478999999998754 346677899999999998887654322 23666655554333 357888887654
No 82
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=21.67 E-value=1e+03 Score=25.51 Aligned_cols=54 Identities=11% Similarity=0.154 Sum_probs=39.3
Q ss_pred ccchhhhHHHHHHHHHHcCCCCCcEEEeecccCCCCCCCCCHHHHHHHHHHHHHHHhhC
Q 010142 276 SNAFDGNFDTLVAALSKLGYGQMPIVIGEVGWPTDGTISANLTAARTFNQGLINHVLSN 334 (517)
Q Consensus 276 ~nlfda~~Dav~~al~k~g~~~~~vvVsETGWPS~G~~~as~~Na~~y~~~lv~~~~s~ 334 (517)
.|..-.-+.++...+++.|.+ -+|+|. ||.|+..-...+|..-.+++++.+..+
T Consensus 234 pNy~~~di~~~~~~l~~~~lp-~~vmVD----~SH~ns~k~~~~q~~va~~v~~qi~~G 287 (344)
T TIGR00034 234 PNYSAADVAAAKKQLEKAGLP-PHLMID----FSHGNSNKDHRRQPDVAEDVCEQIANG 287 (344)
T ss_pred CCCCHHHHHHHHHHHHHcCCC-CeEEEe----CCCcccccchhhhHHHHHHHHHHHHcC
Confidence 454445677787888887754 459998 999988877777777777777777643
No 83
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=20.97 E-value=1.8e+02 Score=30.34 Aligned_cols=90 Identities=19% Similarity=0.190 Sum_probs=50.9
Q ss_pred HHHHHHHHHHcCCCCCcEEEeecccCCCCCCC--CCHHHHHHHHHHHHHHHhhCCCCCCCCCCCCccEEEeeccccc-cc
Q 010142 283 FDTLVAALSKLGYGQMPIVIGEVGWPTDGTIS--ANLTAARTFNQGLINHVLSNKGTPLRPGAPSMDIYLFSLLDEG-AK 359 (517)
Q Consensus 283 ~Dav~~al~k~g~~~~~vvVsETGWPS~G~~~--as~~Na~~y~~~lv~~~~s~~GTP~rpg~~~~~~yiF~lFDE~-~K 359 (517)
.+.+..+|+++.--+++|.|||.-=....... ...+.++.+++.+++.+.+.. |. . -..+.+..+.|.. |.
T Consensus 219 ~~~i~~~l~~~~~~Gl~i~ITElDv~~~~~~~~~~~~~~qA~~~~~~~~~~~~~~--~~--~--v~git~Wg~~D~~sW~ 292 (320)
T PF00331_consen 219 PEQIWNALDRFASLGLPIHITELDVRDDDNPPDAEEEEAQAEYYRDFLTACFSHP--PA--A--VEGITWWGFTDGYSWR 292 (320)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEEEEEESSSTTSCHHHHHHHHHHHHHHHHHHHHTT--HC--T--EEEEEESSSBTTGSTT
T ss_pred HHHHHHHHHHHHHcCCceEEEeeeecCCCCCcchHHHHHHHHHHHHHHHHHHhCC--cc--C--CCEEEEECCCCCCccc
Confidence 34455555555445699999998655443321 345678889999999888762 00 1 1234455566643 65
Q ss_pred CCCCCCcccceEeeecCCCcee
Q 010142 360 SILPGNFERHWGIFSFDGQAKY 381 (517)
Q Consensus 360 ~~~~g~~E~~wGLf~~d~~~ky 381 (517)
...+ ..+=+||+.|.+||-
T Consensus 293 ~~~~---~~~~~lfd~~~~~Kp 311 (320)
T PF00331_consen 293 PDTP---PDRPLLFDEDYQPKP 311 (320)
T ss_dssp GGHS---EG--SSB-TTSBB-H
T ss_pred CCCC---CCCCeeECCCcCCCH
Confidence 4100 123357888888774
No 84
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=20.94 E-value=1.7e+02 Score=28.31 Aligned_cols=54 Identities=19% Similarity=0.252 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhcCCCCCcEEEccccccccccCCCCCcccchhhhHHHHHHHHHHhhCCCCceeec
Q 010142 176 VPALLNLQQSLAKANLAGYVKLVVPCNADAYESSLPSQGAFRPELTQIMTQLVSFLNSNGSPFIVNI 242 (517)
Q Consensus 176 l~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~~pPs~g~F~~~~~~~~~~~ldfL~~~~sp~~vNi 242 (517)
-.+++.+.+.+...|+.+ |++...... ..|. -.....++.+.+.+.+-|+.+++
T Consensus 84 ~~~~~~l~~~~~~~g~~G-v~l~~~~~~-----~~~~-------~~~~~~~~~~~~~~~~~pv~~H~ 137 (273)
T PF04909_consen 84 EDAVEELERALQELGFRG-VKLHPDLGG-----FDPD-------DPRLDDPIFEAAEELGLPVLIHT 137 (273)
T ss_dssp HHHHHHHHHHHHTTTESE-EEEESSETT-----CCTT-------SGHCHHHHHHHHHHHT-EEEEEE
T ss_pred hhHHHHHHHhccccceee-eEecCCCCc-----cccc-------cHHHHHHHHHHHHhhccceeeec
Confidence 357888888888899865 877653211 0111 01112478888888887777663
No 85
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=20.86 E-value=3e+02 Score=27.36 Aligned_cols=81 Identities=14% Similarity=0.121 Sum_probs=45.1
Q ss_pred HHHHHHHhCCCEEEEecCCchh---hhhhhchHHHHHHHHHHhhhhcccCCceEEEEeecCccccCCCCcchhhhHHHHH
Q 010142 103 DALVALMRSGIQVMVGIPNEML---ATLSSSTAASDLWVRQNVSRYLVKGGADIRYIAVGNEPFLTSYAGQFQSYVVPAL 179 (517)
Q Consensus 103 ~vL~A~~~tgi~V~vGV~n~~~---~~ia~~~~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~ll~am 179 (517)
..+++++..|++|++.|..... ..+.+++.....++++ +..+..+ -.+.+|-+==|-... . ......-+
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~-lv~~~~~--~~~DGIdiDwE~~~~----~-~~~~~~fv 121 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVDK-IINYVVS--YNLDGIDVDLEGPDV----T-FGDYLVFI 121 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHH-HHHHHHH--hCCCceeEEeeccCc----c-HhHHHHHH
Confidence 3566777789999988866432 2233444444454443 3333332 223444443344311 1 23456778
Q ss_pred HHHHHHHHhcCC
Q 010142 180 LNLQQSLAKANL 191 (517)
Q Consensus 180 ~nv~~aL~~~gl 191 (517)
+.+|++|++.|+
T Consensus 122 ~~Lr~~l~~~~~ 133 (253)
T cd06545 122 RALYAALKKEGK 133 (253)
T ss_pred HHHHHHHhhcCc
Confidence 999999987664
No 86
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=20.83 E-value=2.3e+02 Score=29.47 Aligned_cols=14 Identities=36% Similarity=0.503 Sum_probs=11.6
Q ss_pred CCcEEEeecccCCC
Q 010142 297 QMPIVIGEVGWPTD 310 (517)
Q Consensus 297 ~~~vvVsETGWPS~ 310 (517)
.|||++||.|+|+-
T Consensus 206 sKpIwftE~Gcpav 219 (299)
T PF13547_consen 206 SKPIWFTEYGCPAV 219 (299)
T ss_pred CcceEEEecCCchh
Confidence 58899999999873
No 87
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=20.82 E-value=2.4e+02 Score=25.42 Aligned_cols=45 Identities=24% Similarity=0.435 Sum_probs=36.9
Q ss_pred CCChHHHHHHHhhCCCCEEEEccCC-----hHHHHHHHhCCCEEEEecCC
Q 010142 77 KLKPSTVVDLLKDNKIQKVKLFDAD-----PDALVALMRSGIQVMVGIPN 121 (517)
Q Consensus 77 lps~~~vv~llk~~~i~~VRiY~~d-----~~vL~A~~~tgi~V~vGV~n 121 (517)
..+++++++..++.|++.|=+=|-+ +...+.+...||+|++|+-.
T Consensus 15 ~~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E~ 64 (175)
T PF02811_consen 15 KDSPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVEI 64 (175)
T ss_dssp SSSHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEEE
T ss_pred cCCHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHhcCCceEEeEee
Confidence 4488999999999999988887665 24566777899999999965
No 88
>PLN00196 alpha-amylase; Provisional
Probab=20.46 E-value=2.4e+02 Score=30.89 Aligned_cols=56 Identities=29% Similarity=0.385 Sum_probs=36.5
Q ss_pred eEEecCCCCC---CCChHHHHHHHhhCCCCEE-----------------EEccCC-h---------HHHHHHHhCCCEEE
Q 010142 67 GVNWGSVSSH---KLKPSTVVDLLKDNKIQKV-----------------KLFDAD-P---------DALVALMRSGIQVM 116 (517)
Q Consensus 67 GvnYg~~~~n---lps~~~vv~llk~~~i~~V-----------------RiY~~d-~---------~vL~A~~~tgi~V~ 116 (517)
|++|-....+ +.--.+-++.||++||+.| +.|+.| + ++++++.+.||+|+
T Consensus 30 ~F~W~~~~~~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVi 109 (428)
T PLN00196 30 GFNWESWKQNGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVI 109 (428)
T ss_pred eeccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEE
Confidence 7887542221 1112334568899998887 456665 2 46788889999999
Q ss_pred EecCCc
Q 010142 117 VGIPNE 122 (517)
Q Consensus 117 vGV~n~ 122 (517)
+.+-..
T Consensus 110 lDvV~N 115 (428)
T PLN00196 110 ADIVIN 115 (428)
T ss_pred EEECcc
Confidence 987543
No 89
>PTZ00129 40S ribosomal protein S14; Provisional
Probab=20.44 E-value=1.9e+02 Score=27.19 Aligned_cols=37 Identities=24% Similarity=0.247 Sum_probs=28.9
Q ss_pred HHHHHHHhhCCCCEEEEcc--------CC-----hHHHHHHHhCCCEEEE
Q 010142 81 STVVDLLKDNKIQKVKLFD--------AD-----PDALVALMRSGIQVMV 117 (517)
Q Consensus 81 ~~vv~llk~~~i~~VRiY~--------~d-----~~vL~A~~~tgi~V~v 117 (517)
+++++.++++||+.|+|+- -. ..+|++|+..||+|..
T Consensus 79 ~~~a~k~~~~Gi~~v~V~vr~~gg~~~kg~GpGr~~airaL~~~glkI~~ 128 (149)
T PTZ00129 79 QDVAARCKELGINALHIKLRATGGVRTKTPGPGAQAALRALARAGLKIGR 128 (149)
T ss_pred HHHHHHHHHcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHCCCEEEE
Confidence 4566778889999998886 22 2689999999999853
No 90
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=20.06 E-value=1.1e+03 Score=25.31 Aligned_cols=159 Identities=18% Similarity=0.112 Sum_probs=78.8
Q ss_pred CChHHHHHHHhhCCCCEEEEccCC-------h--------HHHHHHHhCCCEEEEecCCc---h---hhhhhh-ch---H
Q 010142 78 LKPSTVVDLLKDNKIQKVKLFDAD-------P--------DALVALMRSGIQVMVGIPNE---M---LATLSS-ST---A 132 (517)
Q Consensus 78 ps~~~vv~llk~~~i~~VRiY~~d-------~--------~vL~A~~~tgi~V~vGV~n~---~---~~~ia~-~~---~ 132 (517)
.++.+.++.++..|++.|-+++.+ . .+-++++.+||+|..-..|- . ..++++ ++ +
T Consensus 32 ~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g~las~d~~vR~ 111 (382)
T TIGR02631 32 LDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLKVPMVTTNLFSHPVFKDGGFTSNDRSVRR 111 (382)
T ss_pred cCHHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCeEEEeeccccCCccccCCCCCCCCHHHHH
Confidence 356788999999999999988533 1 34567888999976433320 0 011222 22 2
Q ss_pred HHHHHHHHHhhhhcccCCceEEEEeecCccccCCCC---cchhhhHHHHHHHHHHHHHhcCCCCCcEEEccccccccccC
Q 010142 133 ASDLWVRQNVSRYLVKGGADIRYIAVGNEPFLTSYA---GQFQSYVVPALLNLQQSLAKANLAGYVKLVVPCNADAYESS 209 (517)
Q Consensus 133 ~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~~~---~~~~~~ll~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~~ 209 (517)
.+..-+++.|.-- ..-+.....+..|-+--..... ......++.+|+.+-...++.|++ |++..-. +.+.
T Consensus 112 ~ai~~~kraId~A-~eLGa~~v~v~~G~~g~~~~~~~d~~~a~~~~~e~L~~lae~A~~~G~G--V~laLEp----~p~~ 184 (382)
T TIGR02631 112 YALRKVLRNMDLG-AELGAETYVVWGGREGAEYDGAKDVRAALDRMREALNLLAAYAEDQGYG--LRFALEP----KPNE 184 (382)
T ss_pred HHHHHHHHHHHHH-HHhCCCEEEEccCCCCCcCccccCHHHHHHHHHHHHHHHHHHHHhhCCC--cEEEEcc----CCCC
Confidence 3333344444211 1112333355556432210001 122355666666665555666553 5554311 1000
Q ss_pred CCCCcccchhhhHHHHHHHHHHhhCCCC--ceeecCccccc
Q 010142 210 LPSQGAFRPELTQIMTQLVSFLNSNGSP--FIVNIYPFLSL 248 (517)
Q Consensus 210 pPs~g~F~~~~~~~~~~~ldfL~~~~sp--~~vNiYPyf~~ 248 (517)
|-...| ...+.+.++++...++| +++|+=.|...
T Consensus 185 -~~~~~l----l~T~~~al~li~~v~~pn~vgl~lDvgH~~ 220 (382)
T TIGR02631 185 -PRGDIL----LPTVGHALAFIETLERPELFGLNPETGHEQ 220 (382)
T ss_pred -CCccee----cCCHHHHHHHHHHcCCccceeEEEechhHh
Confidence 101112 23345677777776654 46776666543
Done!