BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010143
         (517 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O22799|Y2349_ARATH Uncharacterized protein At2g33490 OS=Arabidopsis thaliana
           GN=At2g33490 PE=1 SV=2
          Length = 623

 Score =  328 bits (840), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 238/529 (44%), Positives = 317/529 (59%), Gaps = 78/529 (14%)

Query: 1   MKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSL 60
           M+R CDEKRNV E ++ +QREKG+SK GKGE+ S  QQLQ A+D+YE E  L VFRLKSL
Sbjct: 132 MQRLCDEKRNVYEGMLTRQREKGRSKGGKGETFS-PQQLQEAHDDYENETTLFVFRLKSL 190

Query: 61  KQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGL------- 113
           KQGQ RSLLTQAARHHAAQL FF+K   SLE VD HV++V E QHIDY FSGL       
Sbjct: 191 KQGQTRSLLTQAARHHAAQLCFFKKALSSLEEVDPHVQMVTESQHIDYHFSGLEDDDGDD 250

Query: 114 ----EDNDGEDGEDSYYANEAGELSFDYRDNKQGLDVVSTSRKSMEVDDVDVSFPQASTV 169
                +NDG +  D       GELSF+YR N +  D  S++  S E+ + D++FPQ    
Sbjct: 251 EIENNENDGSEVHDD------GELSFEYRVNDKDQDADSSAGGSSELGNSDITFPQIGGP 304

Query: 170 ENAEVNLDKNPGEYQASH---RERRGSSFSAPIFPE-RKIDPAERIRQVQQSSARQPSTY 225
             A+ N +   G Y+ SH   R+ R  S SAP+FPE R   P+E++ +++ +  R+ +TY
Sbjct: 305 YTAQENEE---GNYRKSHSFRRDVRAVSQSAPLFPENRTTPPSEKLLRMRSTLTRKFNTY 361

Query: 226 VLPTPIDAKVPISSSVAPRTR---PSNPS-GRTYNLSHSSPLEQKKEDRDYGDAHLSEHS 281
            LPTP++     SS+ +P  +    SNP+   T  + +SSPLE +      G A +S  S
Sbjct: 362 ALPTPVETTRSPSSTTSPGHKNVGSSNPTKAITKQIWYSSPLETR------GPAKVSSRS 415

Query: 282 --GLKSQSLLKESDSNNASTRPPPLRDGLALPQLDTLNSSDTKKIKTQASSGPLTSKSSS 339
              LK Q +L+ES+  N S  PPPL DGL   +L TL        K ++ SGPLTSK   
Sbjct: 416 MVALKEQ-VLRESN-KNTSRLPPPLADGLLFSRLGTL--------KRRSFSGPLTSKPLP 465

Query: 340 SKPALSSSGPITYTELPQIVSGLLSHAPVPQTKTS--PRV--SPTASPPLVSSPRISELH 395
           +KP  ++S          + SG     P+P+   S  P+V  SPTASP  VS+P+ISELH
Sbjct: 466 NKPLSTTS---------HLYSG-----PIPRNPVSKLPKVSSSPTASPTFVSTPKISELH 511

Query: 396 ELPRPPNAFATKPAKSSGLVGHSAPLMFRNQEHTSTNKNPSMASYTASPLPIPPLIVSRS 455
           ELPRPP   +T   KSS  +G+SAPL+ R+Q  +       + + +ASPLPIPP I +RS
Sbjct: 512 ELPRPPPRSST---KSSRELGYSAPLVSRSQLLSK-----PLITNSASPLPIPPAI-TRS 562

Query: 456 FSIPSSSQKAMALHVSKFLESPKVVEKSEGVSSPPLTPISLANVKPVSI 504
           FSIP+S+ +A  L +SK      +  K  G  SPPLTP+SL +  P ++
Sbjct: 563 FSIPTSNLRASDLDMSK----TSLGTKKLGTPSPPLTPMSLIHPPPQAL 607


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.308    0.124    0.340 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 187,205,148
Number of Sequences: 539616
Number of extensions: 8179619
Number of successful extensions: 30414
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 866
Number of HSP's that attempted gapping in prelim test: 27674
Number of HSP's gapped (non-prelim): 2366
length of query: 517
length of database: 191,569,459
effective HSP length: 122
effective length of query: 395
effective length of database: 125,736,307
effective search space: 49665841265
effective search space used: 49665841265
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)