BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010144
(517 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 398 HPGGRAVIDGTGKGLELDEYDLEPARMALHRFGNTSAGGLWYVLGYMEAKKRLKKGDR 455
HPGG A++D L LD+ LE R L +GN S+ + ++L M +K+ KG+R
Sbjct: 890 HPGGPAILDAVEAKLNLDKKKLEATRHVLSEYGNMSSACVLFILDEM--RKKSLKGER 945
>pdb|2H84|A Chain A, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
pdb|2H84|B Chain B, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
Length = 374
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/274 (16%), Positives = 104/274 (37%), Gaps = 36/274 (13%)
Query: 197 PSLTSRIINRYNLRNDIKAFNLSGMGCSASVVAVDLVQQLFRTYKNKLAIVVSTESMGPN 256
P + ++I+ L D++ +L+ MGC A + ++ L + +VV TE +
Sbjct: 131 PDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASPRNRILVVCTEVCSLH 190
Query: 257 WYCGREKSMMLSNILFRSGGCSMLLTNNRALKHKAILKLNCLVRTHFGSNDEAYECCMQV 316
+ M+++ +F G + ++ N ++ + ++ C + F + + A ++
Sbjct: 191 FSNTDGGDQMVASSIFADGSAAYIIGCNPRIEETPLYEVMCSINRSFPNTENAMVWDLEK 250
Query: 317 EDQQGHPGFRXXXXXXXXXXXXFTMNLQVLVPKILPLREQFRYVIQSYYENRIRKSTSST 376
E + + L +P ++ I+++ + + K
Sbjct: 251 E--------------------GWNLGLDASIPIVI------GSGIEAFVDTLLDK----- 279
Query: 377 KPEAVLGAGLNLKAGIEHFCLHPGGRAVIDGTGKGLELDEYDLEPARMALHRFGNTSAGG 436
A L + A F +H GG++++ L +D + H +GN S+
Sbjct: 280 ---AKLQTSTAISAKDCEFLIHTGGKSILMNIENSLGIDPKQTKNTWDVYHAYGNMSSAS 336
Query: 437 LWYVLGYMEAKKRLKKGDRILMISLGAGFKCNNC 470
+ +V+ + K L + ++ G G C
Sbjct: 337 VIFVMDHARKSKSLPT--YSISLAFGPGLAFEGC 368
>pdb|1U0U|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|E Chain E, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|F Chain F, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
Length = 397
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 395 FCLHPGGRAVIDGTGKGLELDEYDLEPARMALHRFGNTSAGGLWYVL 441
+ +HPGGRA++D L LD L P R + +GN S+ + ++L
Sbjct: 307 WVVHPGGRAILDRVEAKLNLDPTKLIPTRHVMSEYGNMSSACVHFIL 353
>pdb|1XES|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XET|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
Length = 413
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 395 FCLHPGGRAVIDGTGKGLELDEYDLEPARMALHRFGNTSAGGLWYVL 441
+ +HPGGRA++D L LD L P R + +GN S+ + ++L
Sbjct: 323 WVVHPGGRAILDRVEAKLNLDPTKLIPTRHVMSEYGNMSSACVHFIL 369
>pdb|1Z1E|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea
pdb|1Z1F|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea (Resveratrol-Bound Form)
Length = 390
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 398 HPGGRAVIDGTGKGLELDEYDLEPARMALHRFGNTSAGGLWYVLGYMEAKKRLKKG 453
HPGGRA++D + + L ++ R L +GN S+ +++++ M KK L+ G
Sbjct: 304 HPGGRAILDQVEEKVNLKPEKMKATRDVLSNYGNMSSACVFFIMDLMR-KKSLEAG 358
>pdb|1TEE|A Chain A, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|B Chain B, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|C Chain C, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|D Chain D, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
Length = 393
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 61/313 (19%), Positives = 117/313 (37%), Gaps = 70/313 (22%)
Query: 181 SEIDVLVVNVSLFSPAPSLTSRIINRYNLRNDIKAFNLSGMGCSASVVAVDLVQQLFRTY 240
+EI +LV+ S AP + I+ L I ++ MGC+A++ A+ R +
Sbjct: 133 AEIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVRAH 192
Query: 241 KNKLAIVVSTESMGPNWYCGREKSMMLSNILFRSGGCSMLLTNNRALKHKAILKLNCLVR 300
A+VV E N + + ++ + LF GC+ L+ ++ K + +VR
Sbjct: 193 PAMKALVVCIELFSVNAVFADDINDVVIHSLF-GDGCAALVIGASQVQEK-LEPGKVVVR 250
Query: 301 THF-------------GSNDEAYECCMQVEDQQGHPGFRXXXXXXXXXXXXFTMNLQVLV 347
+ F G N C E + PG+ +
Sbjct: 251 SSFSQLLDNTEDGIVLGVNHNGITC----ELSENLPGY--------------------IF 286
Query: 348 PKILPLREQFRYVIQSYYENRIRKSTSSTKPEAVLGAGLNLKAGIEHFCLHPGGRAVIDG 407
+ P+ V + ++N ++ S I+ + +HPGG +I+
Sbjct: 287 SGVAPV------VTEMLWDNGLQISD------------------IDLWAIHPGGPKIIEQ 322
Query: 408 TGKGLELDEYDLEPARMALHRFGNTSAGGLWYVLGYM----EAKKRLKKGDRILMISLGA 463
+ + L + + L RFGN + L +VL M E+ K + G + + G
Sbjct: 323 SVRSLGISAELAAQSWDVLARFGNMLSVSLIFVLETMVQQAESAKAISTG---VAFAFGP 379
Query: 464 GFKCNNCVWEVMK 476
G ++++++
Sbjct: 380 GVTVEGMLFDIIR 392
>pdb|3ROW|A Chain A, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3ROW|B Chain B, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3S1Z|A Chain A, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S1Z|B Chain B, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S20|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
pdb|3S20|B Chain B, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
Length = 344
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 417 YDLEPARMA--LHRFGNTSAGGLWYVLGYMEAKKRLKKGDRILMISLGAGFKCN--NCVW 472
+ ++PA++ GN + VL ++ RLKKGDRI ++ +G+G C+ VW
Sbjct: 285 FGIDPAKVMTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSMAEVVW 344
>pdb|3S21|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal)
pdb|3S23|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal) Xe Derivative
Length = 345
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 417 YDLEPARMA--LHRFGNTSAGGLWYVLGYMEAKKRLKKGDRILMISLGAGFKCN--NCVW 472
+ ++PA++ GN + VL ++ RLKKGDRI ++ +G+G C+ VW
Sbjct: 286 FGIDPAKVMTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSMAEVVW 345
>pdb|3FK5|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Iii, Fabh (Xoo4209) From Xanthomonas Oryzae Pv.
Oryzae Kacc10331
Length = 338
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 417 YDLEPARMA--LHRFGNTSAGGLWYVLGYMEAKKRLKKGDRILMISLGAGFKCN--NCVW 472
+ ++PA++ GN + VL ++ RLKKGDRI ++ +G+G C+ VW
Sbjct: 279 FGIDPAKVMTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSMAEVVW 338
>pdb|1TED|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|C Chain C, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|D Chain D, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
Length = 393
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 61/313 (19%), Positives = 117/313 (37%), Gaps = 70/313 (22%)
Query: 181 SEIDVLVVNVSLFSPAPSLTSRIINRYNLRNDIKAFNLSGMGCSASVVAVDLVQQLFRTY 240
+EI +LV+ S AP + I+ L I ++ MGC+A++ A+ R +
Sbjct: 133 AEIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVRAH 192
Query: 241 KNKLAIVVSTESMGPNWYCGREKSMMLSNILFRSGGCSMLLTNNRALKHKAILKLNCLVR 300
A+VV E N + + ++ + LF GC+ L+ ++ K + +VR
Sbjct: 193 PAMKALVVCIELCSVNAVFADDINDVVIHSLF-GDGCAALVIGASQVQEK-LEPGKVVVR 250
Query: 301 THF-------------GSNDEAYECCMQVEDQQGHPGFRXXXXXXXXXXXXFTMNLQVLV 347
+ F G N C E + PG+ +
Sbjct: 251 SSFSQLLDNTEDGIVLGVNHNGITC----ELSENLPGY--------------------IF 286
Query: 348 PKILPLREQFRYVIQSYYENRIRKSTSSTKPEAVLGAGLNLKAGIEHFCLHPGGRAVIDG 407
+ P+ V + ++N ++ S I+ + +HPGG +I+
Sbjct: 287 SGVAPV------VTEMLWDNGLQISD------------------IDLWAIHPGGPKIIEQ 322
Query: 408 TGKGLELDEYDLEPARMALHRFGNTSAGGLWYVLGYM----EAKKRLKKGDRILMISLGA 463
+ + L + + L RFGN + L +VL M E+ K + G + + G
Sbjct: 323 SVRSLGISAELAAQSWDVLARFGNMLSVSLIFVLETMVQQAESAKAISTG---VAFAFGP 379
Query: 464 GFKCNNCVWEVMK 476
G ++++++
Sbjct: 380 GVTVEGMLFDIIR 392
>pdb|1UB7|A Chain A, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|B Chain B, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|C Chain C, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|D Chain D, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus
Length = 322
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 13/118 (11%)
Query: 354 REQFRYVIQSYYENRIRKSTSSTKPEAVLGAGLNLKAGIEHFCLHPGGRAVIDGTGKGLE 413
RE F++ + + ++ EA+ AGL + I F H +ID + L
Sbjct: 212 REVFKFAV---------RVMNTATLEAIEKAGLTPE-DIRLFVPHQANLRIIDAARERLG 261
Query: 414 LDEYDLEPARMALHRFGNTSAGGLWYVLGYMEAKKRLKKGDRILMISLGAGFKCNNCV 471
L E + + R+GNTS + L R+++GD +L++S GAG V
Sbjct: 262 LP---WERVAVNVDRYGNTSTASIPLALKEAVDAGRIREGDHVLLVSFGAGLTWAAAV 316
>pdb|2D3M|A Chain A, Pentaketide Chromone Synthase Complexed With Coenzyme A
pdb|2D3M|B Chain B, Pentaketide Chromone Synthase Complexed With Coenzyme A
Length = 406
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 398 HPGGRAVIDGTGKGLELDEYDLEPARMALHRFGNTSAGGLWYVLGYMEAKKRLK 451
HPGGRA++D L+L AR L +GN + + Y+L M K K
Sbjct: 319 HPGGRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMRRKSAAK 372
>pdb|3A5S|A Chain A, Benzalacetone Synthase (I207lL208F)
pdb|3A5S|B Chain B, Benzalacetone Synthase (I207lL208F)
Length = 387
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 398 HPGGRAVIDGTGKGLELDEYDLEPARMALHRFGNTSAGGLWYVLGYMEAKKRLKKG 453
HPGG A++D + L++ L+ R L +GN S+ +++++ M KK L+ G
Sbjct: 299 HPGGPAILDQVTAKVGLEKEKLKVTRQVLKDYGNMSSATVFFIMDEMR-KKSLENG 353
>pdb|2D51|A Chain A, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D51|B Chain B, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D52|A Chain A, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
pdb|2D52|B Chain B, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
Length = 406
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 398 HPGGRAVIDGTGKGLELDEYDLEPARMALHRFGNTSAGGLWYVLGYMEAKKRLK 451
HPGGRA++D L+L AR L +GN + + Y+L M K K
Sbjct: 319 HPGGRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMRRKSAAK 372
>pdb|3A5Q|A Chain A, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5Q|B Chain B, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5R|A Chain A, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
pdb|3A5R|B Chain B, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
Length = 387
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 398 HPGGRAVIDGTGKGLELDEYDLEPARMALHRFGNTSAGGLWYVLGYMEAKKRLKKG 453
HPGG A++D + L++ L+ R L +GN S+ +++++ M KK L+ G
Sbjct: 299 HPGGPAILDQVTAKVGLEKEKLKVTRQVLKDYGNMSSATVFFIMDEMR-KKSLENG 353
>pdb|1QLV|A Chain A, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1QLV|B Chain B, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1EE0|A Chain A, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
pdb|1EE0|B Chain B, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
Length = 402
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 397 LHPGGRAVIDGTGKGLELDEYDLEPARMALHRFGNTSAGGLWYVLGYMEAKKRLKKGDRI 456
+HPGGRA++D + L L E L +R L +GN + + +++ + K+ + +G
Sbjct: 307 VHPGGRAILDQVERKLNLKEDKLRASRHVLSEYGNLISACVLFIIDEVR-KRSMAEGKS- 364
Query: 457 LMISLGAGFKCN 468
+ G G C
Sbjct: 365 ---TTGEGLDCG 373
>pdb|1U0M|A Chain A, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
pdb|1U0M|B Chain B, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
Length = 382
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 156 EAFSEMDEIIFDTLDKLFARTDISPSEIDVLVVNVSLFSPAPSLTSRIINRYNLRNDIKA 215
EA S + +I LD ++ ++IDV++ PSLT+ +IN + +
Sbjct: 83 EAKSRVPAVIQRALDD----AELLATDIDVIIYVSCTGFMMPSLTAWLINEMGFDSTTRQ 138
Query: 216 FNLSGMGCSASVVAVDLVQQLFRTYKNKLAIVVSTE 251
++ +GC+A A++ Y A++V+ E
Sbjct: 139 IPIAQLGCAAGGAAINRAHDFCTAYPEANALIVACE 174
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 36/76 (47%)
Query: 392 IEHFCLHPGGRAVIDGTGKGLELDEYDLEPARMALHRFGNTSAGGLWYVLGYMEAKKRLK 451
++ + +H GG ++D LE+D + +R L +GN ++ + L + + ++
Sbjct: 272 LDFYIVHAGGPRILDDLSTFLEVDPHAFRFSRATLTEYGNIASAVVLDALRRLFDEGGVE 331
Query: 452 KGDRILMISLGAGFKC 467
+G R L+ G G
Sbjct: 332 EGARGLLAGFGPGITA 347
>pdb|2P0U|A Chain A, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
pdb|2P0U|B Chain B, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
Length = 413
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 395 FCLHPGGRAVIDGTGKGLELDEYDLEPARMALHRFGNTSAGGLWYVL 441
+ +HPGG A++D LEL++ + +R L +GN S+ + +VL
Sbjct: 318 WAVHPGGPAILDQVEAKLELEKGKFQASRDILSDYGNMSSASVLFVL 364
>pdb|3GWA|A Chain A, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWA|B Chain B, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|A Chain A, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|B Chain B, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
Length = 365
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 392 IEHFCLHPGGRAVIDGTGKGLELDEYDLEPARMALHRFGNTSAGGLWYVLGYMEAKKRLK 451
I+ F LH R ++D K +++ E+ + + GNT + L L M A L
Sbjct: 286 IDCFVLHQANRFMLDALRKKMKIPEHKFP---VLMEHCGNTVSSTLPLALETMRANGTLA 342
Query: 452 KGDRILMISLGAGFKCNNCV 471
+G R++++ G G+ C+
Sbjct: 343 RGMRLMLLGFGVGYSWAGCL 362
>pdb|3S3L|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae
pdb|3S3L|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae
pdb|3T5Y|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae -
Malonic Acid Covalently Linked To The Catalytic Cystein
C116
pdb|3T6S|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae In
Complex With Coa
Length = 357
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 430 GNTSAGGLWYVLGYMEAKKRLKKGDRILMISLGAGFKCNNCVWEVMK 476
G+ AG + L ++ ++ GDR+L+ GAG+ C V E+++
Sbjct: 294 GHVGAGDQYAGLAHLVENALVQPGDRVLLFGGGAGYTCTAAVVEILR 340
>pdb|3T5Y|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae -
Malonic Acid Covalently Linked To The Catalytic Cystein
C116
pdb|3T6S|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae In
Complex With Coa
pdb|3T8E|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae Soaked
With Cervik
pdb|3T8E|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae Soaked
With Cervik
Length = 357
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 430 GNTSAGGLWYVLGYMEAKKRLKKGDRILMISLGAGFKCNNCVWEVMK 476
G+ AG + L ++ ++ GDR+L+ GAG+ C V E+++
Sbjct: 294 GHVGAGDQYAGLAHLVENALVQPGDRVLLFGGGAGYTCTAAVVEILR 340
>pdb|3AWJ|A Chain A, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWJ|B Chain B, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWK|A Chain A, Crystal Structure Of The Polyketide Synthase 1 From
Huperzia Serrata
Length = 402
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 395 FCLHPGGRAVIDGTGKGLELDEYDLEPARMALHRFGNTSAGGLWYVLGYMEAKKRLKKGD 454
+ +HPGG A++D L L ++ +R L +GN S+ + +VL + K +
Sbjct: 313 WAVHPGGPAILDQIEAKLGLSTDKMQASRDVLASYGNMSSASVLFVLDQIR-----KNSE 367
Query: 455 RILMISLGAGFK 466
+ + + G GF+
Sbjct: 368 ELHLPTTGEGFE 379
>pdb|4DFE|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|B Chain B, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|C Chain C, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|D Chain D, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
Length = 333
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 155 AEAFSEMD----EIIFDTLDKLFARTDISPSEIDVLVVNVSLFSPA---PSLTSRIINRY 207
A F+E D ++ F + DI P ID+++V S +P PS + N+
Sbjct: 55 ARYFAEPDVTTSDLAFIASQRAIEAADIDPQSIDLIIVATS--TPDFVFPSTACLLQNKL 112
Query: 208 NLRNDIKAFNLSGMGCSASVVAVDLVQQLFRTYKNKLAIVVSTES 252
+RN AF++ + S AV R+ +++ A+V+ E+
Sbjct: 113 GIRNHGAAFDVQAV-XSGFAYAVATADSFIRSGQHRTALVIGAET 156
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 430 GNTSAGGLWYVLGYMEAKKRLKKGDRILMISLGAGFKCNNCV 471
GNTSA + L R+K+G +L+ +G GF V
Sbjct: 289 GNTSAASIPLALDVAVRDGRIKRGQNVLIEGVGGGFTWGASV 330
>pdb|2EBD|A Chain A, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
pdb|2EBD|B Chain B, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
Length = 309
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 62/296 (20%), Positives = 117/296 (39%), Gaps = 66/296 (22%)
Query: 176 TDISPSEIDVLVVNVSLFSPA---PSLTSRIINRYNLRNDIKAFNLSGMGCSASVVAVDL 232
++SP E+D++++ + +P PS T+ ++ + AF++S CS + A+D+
Sbjct: 65 ANLSPEELDLIIL--ATLTPQKRFPS-TACLVQAQLKAKGVYAFDISA-ACSGFIYALDI 120
Query: 233 VQQLFRTYKNKLAIVVSTE--SMGPNWYCGREKSMMLSNILFRSGGCSMLLTNNRALKHK 290
++ K K +V+ E S +W ++S + +LF G ++++T R+
Sbjct: 121 ADSFIKSGKAKNVLVIGAEKLSEAVDW---EDRS---TCVLFGDGAGAVVVT--RSEDKS 172
Query: 291 AILKLNCLVRTHFGSNDEAYECCMQVEDQQGHPGFRXXXXXXXXXXXXFTMNLQVLVPKI 350
IL GS +E D G+ +
Sbjct: 173 DILATRMYAE---GSLEELLHA-----DNCGYIRMKG----------------------- 201
Query: 351 LPLREQFRYVIQSYYEN-RIRKSTSSTKPEAVLGAGLNLKAGIEHFCLHPGGRAVIDGTG 409
RE F+ ++S E R + KPE V H +I+
Sbjct: 202 ---RELFKVAVRSMEEVCREVLEKAGVKPEEV-----------SLVIPHQANVRIINALA 247
Query: 410 KGLELDEYDLEPARMALHRFGNTSAGGLWYVLGYMEAKKRLKKGDRILMISLGAGF 465
+ L + + E + + ++GNTSA + L + ++K+GD ILM ++G G
Sbjct: 248 EKLNIPK---EKVFVNIQKYGNTSAASIPIALHEAIKEGKVKRGDLILMTAMGGGL 300
>pdb|1I86|A Chain A, Chalcone Synthase, G256a Mutant
Length = 389
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 398 HPGGRAVIDGTGKGLELDEYDLEPARMALHRFGNTSAGGLWYVLGYMEAK 447
HPGG A++D + L L + R L +GN S+ + ++L M K
Sbjct: 303 HPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKK 352
>pdb|1I88|A Chain A, Chalcone Synthase (G256v)
pdb|1I88|B Chain B, Chalcone Synthase (G256v)
Length = 389
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 398 HPGGRAVIDGTGKGLELDEYDLEPARMALHRFGNTSAGGLWYVLGYMEAK 447
HPGG A++D + L L + R L +GN S+ + ++L M K
Sbjct: 303 HPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKK 352
>pdb|1I8B|A Chain A, Chalcone Synthase (g256f)
pdb|1I8B|B Chain B, Chalcone Synthase (g256f)
Length = 389
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 398 HPGGRAVIDGTGKGLELDEYDLEPARMALHRFGNTSAGGLWYVLGYMEAK 447
HPGG A++D + L L + R L +GN S+ + ++L M K
Sbjct: 303 HPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKK 352
>pdb|1I89|A Chain A, Chalcone Synthase (G256l)
pdb|1I89|B Chain B, Chalcone Synthase (G256l)
Length = 389
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 398 HPGGRAVIDGTGKGLELDEYDLEPARMALHRFGNTSAGGLWYVLGYMEAK 447
HPGG A++D + L L + R L +GN S+ + ++L M K
Sbjct: 303 HPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKK 352
>pdb|1CGZ|A Chain A, Chalcone Synthase From Alfalfa Complexed With Resveratrol
pdb|1CGK|A Chain A, Chalcone Synthase From Alfalfa Complexed With Naringenin
Length = 389
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 398 HPGGRAVIDGTGKGLELDEYDLEPARMALHRFGNTSAGGLWYVLGYMEAK 447
HPGG A++D + L L + R L +GN S+ + ++L M K
Sbjct: 303 HPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKK 352
>pdb|1CHW|A Chain A, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
pdb|1CHW|B Chain B, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
Length = 389
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 398 HPGGRAVIDGTGKGLELDEYDLEPARMALHRFGNTSAGGLWYVLGYMEAK 447
HPGG A++D + L L + R L +GN S+ + ++L M K
Sbjct: 303 HPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKK 352
>pdb|1BI5|A Chain A, Chalcone Synthase From Alfalfa
Length = 389
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 398 HPGGRAVIDGTGKGLELDEYDLEPARMALHRFGNTSAGGLWYVLGYMEAK 447
HPGG A++D + L L + R L +GN S+ + ++L M K
Sbjct: 303 HPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKK 352
>pdb|1CML|A Chain A, Chalcone Synthase From Alfalfa Complexed With Malonyl-Coa
pdb|1D6F|A Chain A, Chalcone Synthase C164a Mutant
Length = 389
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 398 HPGGRAVIDGTGKGLELDEYDLEPARMALHRFGNTSAGGLWYVLGYMEAK 447
HPGG A++D + L L + R L +GN S+ + ++L M K
Sbjct: 303 HPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKK 352
>pdb|1JWX|A Chain A, Chalcone Synthase--F215s Mutant
Length = 389
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 398 HPGGRAVIDGTGKGLELDEYDLEPARMALHRFGNTSAGGLWYVLGYMEAK 447
HPGG A++D + L L + R L +GN S+ + ++L M K
Sbjct: 303 HPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKK 352
>pdb|1BQ6|A Chain A, Chalcone Synthase From Alfalfa With Coenzyme A
Length = 388
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 398 HPGGRAVIDGTGKGLELDEYDLEPARMALHRFGNTSAGGLWYVLGYMEAK 447
HPGG A++D + L L + R L +GN S+ + ++L M K
Sbjct: 302 HPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKK 351
>pdb|3OV3|A Chain A, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|B Chain B, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|C Chain C, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|D Chain D, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Query: 395 FCLHPGGRAVIDGTGKGLELDEYDLEPARMALHRFGNTSAGGLWYVLGYMEAKK----RL 450
+ HPG A+ID L+L L AR +GN + +++V+ + + R
Sbjct: 300 WVAHPGNWAIIDAIEAKLQLSPDKLSTARHVFTEYGNMQSATVYFVMDELRKRSAVEGRS 359
Query: 451 KKGDRI---LMISLGAGFKCNNCVWEVM 475
GD + +++ G G V M
Sbjct: 360 TTGDGLQWGVLLGFGPGLSIETVVLRSM 387
>pdb|3OV2|A Chain A, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|B Chain B, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|C Chain C, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|D Chain D, Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Query: 395 FCLHPGGRAVIDGTGKGLELDEYDLEPARMALHRFGNTSAGGLWYVLGYMEAKK----RL 450
+ HPG A+ID L+L L AR +GN + +++V+ + + R
Sbjct: 300 WVAHPGNWAIIDAIEAKLQLSPDKLSTARHVFTEYGNMQSATVYFVMDELRKRSAVEGRS 359
Query: 451 KKGDRI---LMISLGAGFKCNNCVWEVM 475
GD + +++ G G V M
Sbjct: 360 TTGDGLQWGVLLGFGPGLSIETVVLRSM 387
>pdb|1U0V|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0V|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0W|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
Length = 393
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 398 HPGGRAVIDGTGKGLELDEYDLEPARMALHRFGNTSAGGLWYVLGYMEAK 447
HPGG A++D + L L + R L +GN S+ + ++L M K
Sbjct: 307 HPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKK 356
>pdb|3ALE|A Chain A, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|B Chain B, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|C Chain C, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|D Chain D, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
Length = 416
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 8/134 (5%)
Query: 181 SEIDVLVVNVSLFSPAPSLTSRIINRYNLRNDIKAFNLSGMGCSASVVAVDLVQQLFRTY 240
++I LVV + + P + R++ LR ++ L GC A A+ L + L
Sbjct: 146 ADITHLVVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLAENS 205
Query: 241 KNKLAIVVSTES-----MGPNWYCGREKSMMLSNILFRSGGCSMLLTNNRALKHKAILKL 295
+ +VV+ E GP+ C R +L LF G ++++ + + + ++
Sbjct: 206 RGARVLVVAAELTLMYFTGPDEGCFR---TLLVQGLFGDGAAAVIVGADADDVERPLFEI 262
Query: 296 NCLVRTHFGSNDEA 309
+T +D A
Sbjct: 263 VSAAQTIIPESDHA 276
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 26/55 (47%)
Query: 395 FCLHPGGRAVIDGTGKGLELDEYDLEPARMALHRFGNTSAGGLWYVLGYMEAKKR 449
+ +HPG ++D L L+ L +R L +GN S + + L + +++
Sbjct: 327 WAVHPGSSTIMDQVDAALGLEPGKLAASRRVLSDYGNMSGATVIFALDELRRQRK 381
>pdb|3OIT|A Chain A, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
pdb|3OIT|B Chain B, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
Length = 387
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 8/134 (5%)
Query: 181 SEIDVLVVNVSLFSPAPSLTSRIINRYNLRNDIKAFNLSGMGCSASVVAVDLVQQLFRTY 240
++I LVV + + P + R++ LR ++ L GC A A+ L + L
Sbjct: 116 ADITHLVVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLAENS 175
Query: 241 KNKLAIVVSTES-----MGPNWYCGREKSMMLSNILFRSGGCSMLLTNNRALKHKAILKL 295
+ +VV+ E GP+ C R +L LF G ++++ + + + ++
Sbjct: 176 RGARVLVVAAELTLMYFTGPDEGCFR---TLLVQGLFGDGAAAVIVGADADDVERPLFEI 232
Query: 296 NCLVRTHFGSNDEA 309
+T +D A
Sbjct: 233 VSAAQTIIPESDHA 246
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 26/55 (47%)
Query: 395 FCLHPGGRAVIDGTGKGLELDEYDLEPARMALHRFGNTSAGGLWYVLGYMEAKKR 449
+ +HPG ++D L L+ L +R L +GN S + + L + +++
Sbjct: 297 WAVHPGSSTIMDQVDAALGLEPGKLAASRRVLSDYGNMSGATVIFALDELRRQRK 351
>pdb|2DUO|A Chain A, Crystal Structure Of Vip36 ExoplasmicLUMENAL DOMAIN, CA2+-
Bound Form
pdb|2DUO|B Chain B, Crystal Structure Of Vip36 ExoplasmicLUMENAL DOMAIN, CA2+-
Bound Form
pdb|2DUP|A Chain A, Crystal Structure Of Vip36 ExoplasmicLUMENAL DOMAIN,
METAL-Free Form
pdb|2DUP|B Chain B, Crystal Structure Of Vip36 ExoplasmicLUMENAL DOMAIN,
METAL-Free Form
pdb|2DUQ|A Chain A, Crystal Structure Of Vip36 ExoplasmicLUMENAL DOMAIN,
Ca2+MAN-Bound Form
pdb|2DUQ|B Chain B, Crystal Structure Of Vip36 ExoplasmicLUMENAL DOMAIN,
Ca2+MAN-Bound Form
pdb|2DUR|A Chain A, Crystal Structure Of Vip36 ExoplasmicLUMENAL DOMAIN,
CA2+MAN2-Bound Form
pdb|2DUR|B Chain B, Crystal Structure Of Vip36 ExoplasmicLUMENAL DOMAIN,
CA2+MAN2-Bound Form
pdb|2E6V|A Chain A, Crystal Structure Of Vip36 ExoplasmicLUMENAL DOMAIN,
Ca2+MAN3GLCNAC-Bound Form
pdb|2E6V|B Chain B, Crystal Structure Of Vip36 ExoplasmicLUMENAL DOMAIN,
Ca2+MAN3GLCNAC-Bound Form
pdb|2E6V|C Chain C, Crystal Structure Of Vip36 ExoplasmicLUMENAL DOMAIN,
Ca2+MAN3GLCNAC-Bound Form
pdb|2E6V|D Chain D, Crystal Structure Of Vip36 ExoplasmicLUMENAL DOMAIN,
Ca2+MAN3GLCNAC-Bound Form
pdb|2E6V|E Chain E, Crystal Structure Of Vip36 ExoplasmicLUMENAL DOMAIN,
Ca2+MAN3GLCNAC-Bound Form
Length = 253
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 431 NTSAGGLWYVLGYMEAKKRLKKGDRILMISLGAGFKCNNCVWEVMKDLEDPNVWKDCID 489
+ S G W L A R + D L + G VM DLED N WK+CID
Sbjct: 141 DHSKDGRWTELAGCTADFRNRDHDTFLAVRYSRGRLT------VMTDLEDKNEWKNCID 193
>pdb|1D6H|A Chain A, Chalone Synthase (N336a Mutant Complexed With Coa)
Length = 387
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 398 HPGGRAVIDGTGKGLELDEYDLEPARMALHRFGNTSAGGLWYVLGYMEAK 447
HPGG A++D + L L + R L +G S+ + ++L M K
Sbjct: 301 HPGGPAILDQVEQKLALKPEKMNATREVLSEYGAMSSACVLFILDEMRKK 350
>pdb|1D6I|A Chain A, Chalcone Synthase (H303q Mutant)
pdb|1D6I|B Chain B, Chalcone Synthase (H303q Mutant)
Length = 388
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 398 HPGGRAVIDGTGKGLELDEYDLEPARMALHRFGNTSAGGLWYVLGYMEAK 447
PGG A++D + L L + R L +GN S+ + ++L M K
Sbjct: 302 QPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKK 351
>pdb|4H7N|A Chain A, The Structure Of Putative Aldehyde Dehydrogenase Puta From
Anabaena Variabilis.
pdb|4H7N|B Chain B, The Structure Of Putative Aldehyde Dehydrogenase Puta From
Anabaena Variabilis.
pdb|4H7N|C Chain C, The Structure Of Putative Aldehyde Dehydrogenase Puta From
Anabaena Variabilis.
pdb|4H7N|D Chain D, The Structure Of Putative Aldehyde Dehydrogenase Puta From
Anabaena Variabilis
Length = 474
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 14/123 (11%)
Query: 136 EETYGPRNVVEGREESPSLAEAFSEMDEIIFDTLDKLFARTDISPSEIDVLVVNVSLFSP 195
EET+GP V P + EA ++ I+ +FA SE + L V L +
Sbjct: 363 EETFGPIXPVX---PFPDVEEAVYLANDTIYGLSAAVFAG-----SEDEALKVARQLNAG 414
Query: 196 APSLTSRIINRYNLRNDIKAFNLSGMGCSASVVAVDLVQQLFRTYKNKLAIVVSTESMGP 255
A S+ + + AFN SG+G S V A L + + K A ++ T S
Sbjct: 415 AISINDAALTAXXHEGEKNAFNFSGLGGS-RVGAAGL-----KRFLRKQAFLIKTNSTSD 468
Query: 256 NWY 258
W+
Sbjct: 469 PWW 471
>pdb|1HN9|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HN9|B Chain B, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HND|A Chain A, Crystal Structure Of Beta-ketoacyl-acp Synthase Iii-coa
Complex
pdb|1HNJ|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Malonyl-Coa
pdb|1HNK|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii, Apo
Tetragonal Form
pdb|2EFT|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2EFT|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2GYO|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
pdb|2GYO|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
Length = 317
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 398 HPGGRAVIDGTGKGLELDEYDLEPARMALHRFGNTSAGGLWYVLGYMEAKKRLKKGDRIL 457
H +I T K L + ++ + L R GNTSA + L R+K G +L
Sbjct: 244 HQANLRIISATAKKLGMS---MDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVL 300
Query: 458 MISLGAGF 465
+ + G GF
Sbjct: 301 LEAFGGGF 308
>pdb|3IL9|A Chain A, Structure Of E. Coli Fabh
pdb|3IL9|B Chain B, Structure Of E. Coli Fabh
Length = 340
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 398 HPGGRAVIDGTGKGLELDEYDLEPARMALHRFGNTSAGGLWYVLGYMEAKKRLKKGDRIL 457
H +I T K L + ++ + L R GNTSA + L R+K G +L
Sbjct: 267 HQANLRIISATAKKLGMS---MDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVL 323
Query: 458 MISLGAGF 465
+ + G GF
Sbjct: 324 LEAFGGGF 331
>pdb|1MZS|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii With
Bound Dichlorobenzyloxy-Indole-Carboxylic Acid Inhibitor
Length = 317
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 398 HPGGRAVIDGTGKGLELDEYDLEPARMALHRFGNTSAGGLWYVLGYMEAKKRLKKGDRIL 457
H +I T K L + ++ + L R GNTSA + L R+K G +L
Sbjct: 244 HQANLRIISATAKKLGMS---MDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVL 300
Query: 458 MISLGAGF 465
+ + G GF
Sbjct: 301 LEAFGGGF 308
>pdb|1EBL|A Chain A, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
pdb|1EBL|B Chain B, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
Length = 317
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 381 VLGAGLNLKAGIEHFCLHPGGRAVIDGTGKGLELDEYDLEPARMALHRFGNTSAGGLWYV 440
L A N ++ ++ H +I T K L ++ + L R GNTSA +
Sbjct: 227 TLAANNNDRSQLDWLVPHQANLRIISATAKKLGXSXDNV---VVTLDRHGNTSAASVPCA 283
Query: 441 LGYMEAKKRLKKGDRILMISLGAGF 465
L R+K G +L+ + G GF
Sbjct: 284 LDEAVRDGRIKPGQLVLLEAFGGGF 308
>pdb|3V7I|A Chain A, Germicidin Synthase (Gcs) From Streptomyces Coelicolor, A
Type Iii Polyketide Synthase
Length = 413
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/118 (18%), Positives = 52/118 (44%), Gaps = 3/118 (2%)
Query: 181 SEIDVLVVNVSLFSPAPSLTSRIINRYNLRNDIKAFNLSGMGCSASVVAVDLVQQLFRTY 240
+++D L+ + S P L + NR LR D + C A ++ L L
Sbjct: 157 ADVDCLITSNSTTPALPGLDVALANRLPLRGDTMLLPATQWACVAGTRSLALAADLVAAD 216
Query: 241 KNKLAIVVSTESMGPNWYCGREK-SMMLSNILFRSGGCSMLLTNNRALKHKAILKLNC 297
+++ +VV +E++ + + ++ +LF + ++T + +++L+L+
Sbjct: 217 PDRVVLVVISEALSTTYQPADDTLESLIVRLLFADTAVAAVVTGRP--RPESVLRLDA 272
>pdb|3TEF|A Chain A, Crystal Structure Of The Periplasmic
Catecholate-Siderophore Binding Protein Vctp From Vibrio
Cholerae
Length = 292
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 366 ENRIRKSTSSTKPEAVLGAGLNLKAGIEHFCLHPGGRAVIDGTGKGLELDEYDLEPARMA 425
E+R+ K+T KP+ V+ G+ I+ F + P + DGT L + D P+ +
Sbjct: 7 EHRLGKTTLEQKPQRVVVIGVGALDAIDSFGIEPVAVSKFDGTPDYLAKYKSDKYPSAGS 66
Query: 426 L 426
L
Sbjct: 67 L 67
>pdb|1HNH|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Degraded Form Of Acetyl-Coa
Length = 317
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 424 MALHRFGNTSAGGLWYVLGYMEAKKRLKKGDRILMISLGAGF 465
+ L R GNTSA + L R+K G +L+ + G GF
Sbjct: 267 VTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGF 308
>pdb|1FEP|A Chain A, Ferric Enterobactin Receptor
Length = 724
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 30/100 (30%)
Query: 75 KWVLQKRGQCCYMLAYECYKPCDETRRLDTESCARVVWRNKKLGLE-----------EYR 123
++L +GQ CY A CY ++ + +T NK++GLE +R
Sbjct: 477 NYILYSKGQGCYASAGGCYLQGNDDLKAETSI-------NKEIGLEFKRDGWLAGVTWFR 529
Query: 124 FLLKNMVSSG---IGEETYG---------PRNVVEGREES 151
+N + +G +G+ G P+ VVEG E S
Sbjct: 530 NDYRNKIEAGYVAVGQNAVGTDLYQWDNVPKAVVEGLEGS 569
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,707,130
Number of Sequences: 62578
Number of extensions: 590271
Number of successful extensions: 1344
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1284
Number of HSP's gapped (non-prelim): 62
length of query: 517
length of database: 14,973,337
effective HSP length: 103
effective length of query: 414
effective length of database: 8,527,803
effective search space: 3530510442
effective search space used: 3530510442
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)